Index Sample Index Original Filename Sample Name Sample ID Sample Comment Sample Type Acquisition Date & Time Rack Number Plate Number Vial Number Dilution Factor Injection Volume Operator Name Acq. Method Name IS Component Name Component Index Component Comment IS Comment Mass Info IS Mass Info IS Name Component Group Name Conc. Units Failed Query IS Failed Query Peak Comment IS Peak Comment Actual Concentration IS Actual Concentration Concentration Ratio Expected RT IS Expected RT Integration Type IS Integration Type Area IS Area Corrected Area IS Corrected Area Area Ratio Height IS Height Corrected Height IS Corrected Height Height Ratio Area / Height IS Area / Height Corrected Area/Height IS Corrected Area/Height Region Height IS Region Height Quality IS Quality Retention Time IS Retention Time Start Time IS Start Time End Time IS End Time Total Width IS Total Width Width at 50% IS Width at 50% Signal / Noise IS Signal / Noise Baseline Delta / Height IS Baseline Delta / Height Modified Relative RT Used Calculated Concentration Accuracy SF Peak Width Confidence SF Model Source SF Candidate Model Quality SF Asymmetry SF Saturated SF Integration Quality SF Group Confidence SF Num Peaks Score_IMPAQT MSSimScore_IMPAQT HeightScore_IMPAQT RTminScore_IMPAQT RankScore_IMPAQT MSSim_IMPAQT MSSimSita_IMPAQT RTminDiff_IMPAQT RankSum_IMPAQT CosSimilarity_IMPAQT CosSimilaritySita_IMPAQT Height_IMPAQT InterfereTrans_IMPAQT InterfereTransAll_IMPAQT LScore_IMPAQT LRTminScore_IMPAQT LSNScore_IMPAQT LSNAllScore_IMPAQT HLSimScore_IMPAQT HLSim_IMPAQT HLSimSita_IMPAQT BaseLine_IMPAQT BaseLineUnitNum_IMPAQT BaseLineMaxCount_IMPAQT Symbol Description 1 1 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9576.[MT7]-K[MT7]FIYLLSESEDGVLDLNWAAEVLDVQK[MT7].4b4_1.heavy 882.482 / 840.522 3707.0 48.368226051330566 33 7 10 6 10 0.6009269175130302 86.45226583190691 0.036899566650390625 3 0.7426758510708208 2.378678966956871 3707.0 18.71100450584643 0.0 - - - - - - - 224.1904761904762 7 21 E2F2 E2F transcription factor 2 3 1 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9576.[MT7]-K[MT7]FIYLLSESEDGVLDLNWAAEVLDVQK[MT7].4b5_1.heavy 882.482 / 953.606 4324.0 48.368226051330566 33 7 10 6 10 0.6009269175130302 86.45226583190691 0.036899566650390625 3 0.7426758510708208 2.378678966956871 4324.0 26.027961165048545 0.0 - - - - - - - 211.31578947368422 8 19 E2F2 E2F transcription factor 2 5 1 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9576.[MT7]-K[MT7]FIYLLSESEDGVLDLNWAAEVLDVQK[MT7].4y3_1.heavy 882.482 / 518.342 13591.0 48.368226051330566 33 7 10 6 10 0.6009269175130302 86.45226583190691 0.036899566650390625 3 0.7426758510708208 2.378678966956871 13591.0 65.82246847594614 0.0 - - - - - - - 240.05555555555554 27 18 E2F2 E2F transcription factor 2 7 1 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9576.[MT7]-K[MT7]FIYLLSESEDGVLDLNWAAEVLDVQK[MT7].4b3_1.heavy 882.482 / 677.459 4942.0 48.368226051330566 33 7 10 6 10 0.6009269175130302 86.45226583190691 0.036899566650390625 3 0.7426758510708208 2.378678966956871 4942.0 8.226088154022555 0.0 - - - - - - - 199.10526315789474 9 19 E2F2 E2F transcription factor 2 9 2 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9574.[MT7]-RSDAEEVDFAGWLC[CAM]STIGLNQPSTPTHAAGV.4b8_1.heavy 858.417 / 1046.49 N/A N/A - - - - - - - - - 0.0 - - - - - - - MAP2K1 mitogen-activated protein kinase kinase 1 11 2 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9574.[MT7]-RSDAEEVDFAGWLC[CAM]STIGLNQPSTPTHAAGV.4b8_2.heavy 858.417 / 523.747 N/A N/A - - - - - - - - - 0.0 - - - - - - - MAP2K1 mitogen-activated protein kinase kinase 1 13 2 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9574.[MT7]-RSDAEEVDFAGWLC[CAM]STIGLNQPSTPTHAAGV.4y6_1.heavy 858.417 / 555.289 N/A N/A - - - - - - - - - 0.0 - - - - - - - MAP2K1 mitogen-activated protein kinase kinase 1 15 2 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9574.[MT7]-RSDAEEVDFAGWLC[CAM]STIGLNQPSTPTHAAGV.4b6_1.heavy 858.417 / 832.392 N/A N/A - - - - - - - - - 0.0 - - - - - - - MAP2K1 mitogen-activated protein kinase kinase 1 17 3 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9575.[MT7]-IIRGPEDQTVLLVTVPDFSATQTAC[CAM]LVNLR.4b7_1.heavy 868.475 / 925.522 4234.0 41.44409942626953 40 10 10 10 10 0.7680075065734295 74.76557939952245 0.0 3 0.825740907781989 2.912368015114735 4234.0 8.954761096289111 0.0 - - - - - - - 326.0 8 7 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 19 3 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9575.[MT7]-IIRGPEDQTVLLVTVPDFSATQTAC[CAM]LVNLR.4b11_2.heavy 868.475 / 683.894 56509.0 41.44409942626953 40 10 10 10 10 0.7680075065734295 74.76557939952245 0.0 3 0.825740907781989 2.912368015114735 56509.0 40.171231190536425 0.0 - - - - - - - 1326.2857142857142 113 7 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 21 3 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9575.[MT7]-IIRGPEDQTVLLVTVPDFSATQTAC[CAM]LVNLR.4b10_2.heavy 868.475 / 627.352 40224.0 41.44409942626953 40 10 10 10 10 0.7680075065734295 74.76557939952245 0.0 3 0.825740907781989 2.912368015114735 40224.0 62.32821414716152 0.0 - - - - - - - 407.5 80 4 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 23 3 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9575.[MT7]-IIRGPEDQTVLLVTVPDFSATQTAC[CAM]LVNLR.4b9_2.heavy 868.475 / 577.818 21496.0 41.44409942626953 40 10 10 10 10 0.7680075065734295 74.76557939952245 0.0 3 0.825740907781989 2.912368015114735 21496.0 29.365218726016884 0.0 - - - - - - - 380.3333333333333 42 9 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 25 4 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9570.[MT7]-NILAILSVQQQTIHVFQVTPEGTFIDVR.4y9_1.heavy 828.462 / 1033.53 11076.0 45.8272008895874 38 12 10 6 10 0.8675167462582046 67.94229733579402 0.038799285888671875 3 0.88400705791618 3.588032976670776 11076.0 95.56725663716814 0.0 - - - - - - - 197.75 22 12 DET1 de-etiolated homolog 1 (Arabidopsis) 27 4 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9570.[MT7]-NILAILSVQQQTIHVFQVTPEGTFIDVR.4b4_1.heavy 828.462 / 556.357 8138.0 45.8272008895874 38 12 10 6 10 0.8675167462582046 67.94229733579402 0.038799285888671875 3 0.88400705791618 3.588032976670776 8138.0 16.975600505689 0.0 - - - - - - - 248.6 16 10 DET1 de-etiolated homolog 1 (Arabidopsis) 29 4 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9570.[MT7]-NILAILSVQQQTIHVFQVTPEGTFIDVR.4b5_1.heavy 828.462 / 669.442 7346.0 45.8272008895874 38 12 10 6 10 0.8675167462582046 67.94229733579402 0.038799285888671875 3 0.88400705791618 3.588032976670776 7346.0 19.01508849557522 0.0 - - - - - - - 726.4285714285714 14 7 DET1 de-etiolated homolog 1 (Arabidopsis) 31 4 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9570.[MT7]-NILAILSVQQQTIHVFQVTPEGTFIDVR.4y7_1.heavy 828.462 / 807.436 3730.0 45.8272008895874 38 12 10 6 10 0.8675167462582046 67.94229733579402 0.038799285888671875 3 0.88400705791618 3.588032976670776 3730.0 16.661036108778504 1.0 - - - - - - - 207.16666666666666 9 6 DET1 de-etiolated homolog 1 (Arabidopsis) 33 5 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9475.[MT7]-LFELILMEEIRFPR.3b4_1.heavy 650.705 / 647.388 3950.0 47.707573890686035 39 13 10 6 10 1.1368325872968221 56.05845602965299 0.038700103759765625 3 0.9043327823189453 3.957820626379374 3950.0 5.975318471337579 1.0 - - - - - - - 258.25 7 8 AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 35 5 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9475.[MT7]-LFELILMEEIRFPR.3b3_1.heavy 650.705 / 534.304 3142.0 47.707573890686035 39 13 10 6 10 1.1368325872968221 56.05845602965299 0.038700103759765625 3 0.9043327823189453 3.957820626379374 3142.0 1.0206032482598608 3.0 - - - - - - - 279.3333333333333 6 9 AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 37 5 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9475.[MT7]-LFELILMEEIRFPR.3y12_2.heavy 650.705 / 773.427 2873.0 47.707573890686035 39 13 10 6 10 1.1368325872968221 56.05845602965299 0.038700103759765625 3 0.9043327823189453 3.957820626379374 2873.0 0.6789669142471303 2.0 - - - - - - - 262.0 5 12 AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 39 5 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9475.[MT7]-LFELILMEEIRFPR.3y13_2.heavy 650.705 / 846.961 9606.0 47.707573890686035 39 13 10 6 10 1.1368325872968221 56.05845602965299 0.038700103759765625 3 0.9043327823189453 3.957820626379374 9606.0 2.0349191249459135 0.0 - - - - - - - 209.5 19 6 AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 41 6 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7200.[MT7]-YHGVSLLNPPETLNL.2b8_1.heavy 905.995 / 1028.56 19424.0 38.946449279785156 40 14 10 6 10 1.7303817077436616 45.704131269784256 0.0373992919921875 3 0.9352706212994287 4.824371123484197 19424.0 37.66835496421807 0.0 - - - - - - - 335.0 38 3 CCNA2 cyclin A2 43 6 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7200.[MT7]-YHGVSLLNPPETLNL.2b3_1.heavy 905.995 / 502.253 1507.0 38.946449279785156 40 14 10 6 10 1.7303817077436616 45.704131269784256 0.0373992919921875 3 0.9352706212994287 4.824371123484197 1507.0 0.0 2.0 - - - - - - - 652.9 3 10 CCNA2 cyclin A2 45 6 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7200.[MT7]-YHGVSLLNPPETLNL.2b4_1.heavy 905.995 / 601.321 3516.0 38.946449279785156 40 14 10 6 10 1.7303817077436616 45.704131269784256 0.0373992919921875 3 0.9352706212994287 4.824371123484197 3516.0 3.7806451612903227 1.0 - - - - - - - 686.5 7 10 CCNA2 cyclin A2 47 6 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7200.[MT7]-YHGVSLLNPPETLNL.2b7_1.heavy 905.995 / 914.522 5526.0 38.946449279785156 40 14 10 6 10 1.7303817077436616 45.704131269784256 0.0373992919921875 3 0.9352706212994287 4.824371123484197 5526.0 5.660895034641209 1.0 - - - - - - - 741.5714285714286 11 7 CCNA2 cyclin A2 49 7 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9571.[MT7]-DIVSIQELIEVEEEEEILLNSYTTPSK[MT7].4b8_1.heavy 852.95 / 1042.59 7311.0 47.697898864746094 47 17 10 10 10 2.128599255292397 37.19957924292004 0.0 3 0.9745000636802096 7.711974827883751 7311.0 24.21231176470588 0.0 - - - - - - - 221.0 14 15 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 51 7 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9571.[MT7]-DIVSIQELIEVEEEEEILLNSYTTPSK[MT7].4b7_1.heavy 852.95 / 929.506 9947.0 47.697898864746094 47 17 10 10 10 2.128599255292397 37.19957924292004 0.0 3 0.9745000636802096 7.711974827883751 9947.0 35.11263137254902 0.0 - - - - - - - 680.0 19 10 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 53 7 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9571.[MT7]-DIVSIQELIEVEEEEEILLNSYTTPSK[MT7].4b4_1.heavy 852.95 / 559.321 6631.0 47.697898864746094 47 17 10 10 10 2.128599255292397 37.19957924292004 0.0 3 0.9745000636802096 7.711974827883751 6631.0 41.146330147058826 0.0 - - - - - - - 209.66666666666666 13 15 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 55 7 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9571.[MT7]-DIVSIQELIEVEEEEEILLNSYTTPSK[MT7].4b6_1.heavy 852.95 / 800.463 5186.0 47.697898864746094 47 17 10 10 10 2.128599255292397 37.19957924292004 0.0 3 0.9745000636802096 7.711974827883751 5186.0 32.94635294117647 0.0 - - - - - - - 669.375 10 8 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 57 8 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9476.[MT7]-VSYLLQEIYGIENK[MT7].3y6_1.heavy 653.034 / 867.469 64414.0 42.926700592041016 43 13 10 10 10 1.3327756199647407 49.71357830344815 0.0 3 0.9106143250669368 4.096746338598294 64414.0 455.0676978750507 0.0 - - - - - - - 328.6666666666667 128 6 MGRN1 mahogunin, ring finger 1 59 8 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9476.[MT7]-VSYLLQEIYGIENK[MT7].3b4_1.heavy 653.034 / 607.357 84724.0 42.926700592041016 43 13 10 10 10 1.3327756199647407 49.71357830344815 0.0 3 0.9106143250669368 4.096746338598294 84724.0 131.8522387168637 0.0 - - - - - - - 273.0 169 5 MGRN1 mahogunin, ring finger 1 61 8 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9476.[MT7]-VSYLLQEIYGIENK[MT7].3b5_1.heavy 653.034 / 720.441 52744.0 42.926700592041016 43 13 10 10 10 1.3327756199647407 49.71357830344815 0.0 3 0.9106143250669368 4.096746338598294 52744.0 129.77880627634073 0.0 - - - - - - - 177.16666666666666 105 6 MGRN1 mahogunin, ring finger 1 63 8 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9476.[MT7]-VSYLLQEIYGIENK[MT7].3y5_1.heavy 653.034 / 704.406 85785.0 42.926700592041016 43 13 10 10 10 1.3327756199647407 49.71357830344815 0.0 3 0.9106143250669368 4.096746338598294 85785.0 220.61383938766016 0.0 - - - - - - - 322.375 171 8 MGRN1 mahogunin, ring finger 1 65 9 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9473.[MT7]-LISGDNAEIDLEDLK[MT7].3y3_1.heavy 645.017 / 519.326 34063.0 35.943575859069824 40 14 10 6 10 1.1884625578896406 48.195780391718074 0.030696868896484375 3 0.9396136987104213 4.996697940103434 34063.0 26.286559485530542 0.0 - - - - - - - 1732.857142857143 68 7 UBE3B ubiquitin protein ligase E3B 67 9 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9473.[MT7]-LISGDNAEIDLEDLK[MT7].3b6_1.heavy 645.017 / 744.401 28619.0 35.943575859069824 40 14 10 6 10 1.1884625578896406 48.195780391718074 0.030696868896484375 3 0.9396136987104213 4.996697940103434 28619.0 31.871982983887396 0.0 - - - - - - - 1244.3333333333333 57 9 UBE3B ubiquitin protein ligase E3B 69 9 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9473.[MT7]-LISGDNAEIDLEDLK[MT7].3b5_1.heavy 645.017 / 630.358 24420.0 35.943575859069824 40 14 10 6 10 1.1884625578896406 48.195780391718074 0.030696868896484375 3 0.9396136987104213 4.996697940103434 24420.0 18.581933477864773 0.0 - - - - - - - 2222.0 48 7 UBE3B ubiquitin protein ligase E3B 71 9 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9473.[MT7]-LISGDNAEIDLEDLK[MT7].3b7_1.heavy 645.017 / 815.438 23020.0 35.943575859069824 40 14 10 6 10 1.1884625578896406 48.195780391718074 0.030696868896484375 3 0.9396136987104213 4.996697940103434 23020.0 25.90675241157556 0.0 - - - - - - - 760.3333333333334 46 9 UBE3B ubiquitin protein ligase E3B 73 10 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9478.[MT7]-NVTVLFLSEIVWEK[MT7].3y3_1.heavy 655.715 / 606.337 37757.0 47.81330108642578 44 14 10 10 10 2.494561533108349 32.17922905068962 0.0 3 0.9304427386044067 4.652014284710479 37757.0 142.18121423167733 0.0 - - - - - - - 290.4 75 5 ORC5 origin recognition complex, subunit 5 75 10 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9478.[MT7]-NVTVLFLSEIVWEK[MT7].3b4_1.heavy 655.715 / 558.337 15547.0 47.81330108642578 44 14 10 10 10 2.494561533108349 32.17922905068962 0.0 3 0.9304427386044067 4.652014284710479 15547.0 62.094663605279905 0.0 - - - - - - - 219.71428571428572 31 7 ORC5 origin recognition complex, subunit 5 77 10 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9478.[MT7]-NVTVLFLSEIVWEK[MT7].3b5_1.heavy 655.715 / 671.421 32632.0 47.81330108642578 44 14 10 10 10 2.494561533108349 32.17922905068962 0.0 3 0.9304427386044067 4.652014284710479 32632.0 78.54501456996263 0.0 - - - - - - - 324.4 65 5 ORC5 origin recognition complex, subunit 5 79 10 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9478.[MT7]-NVTVLFLSEIVWEK[MT7].3y4_1.heavy 655.715 / 705.405 21783.0 47.81330108642578 44 14 10 10 10 2.494561533108349 32.17922905068962 0.0 3 0.9304427386044067 4.652014284710479 21783.0 68.35567584539918 0.0 - - - - - - - 245.5 43 8 ORC5 origin recognition complex, subunit 5 81 11 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9569.[MT7]-NLSSDDANVLVWHALLLPDQPPYHLK[MT7].4b8_1.heavy 811.691 / 961.434 8529.0 40.80324935913086 39 13 10 6 10 1.3891241740390445 47.9918699224889 0.0373992919921875 3 0.9234619152969185 4.432143971151458 8529.0 30.635475907606523 0.0 - - - - - - - 241.22222222222223 17 9 UBE2L6 ubiquitin-conjugating enzyme E2L 6 83 11 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9569.[MT7]-NLSSDDANVLVWHALLLPDQPPYHLK[MT7].4b7_1.heavy 811.691 / 847.391 3010.0 40.80324935913086 39 13 10 6 10 1.3891241740390445 47.9918699224889 0.0373992919921875 3 0.9234619152969185 4.432143971151458 3010.0 3.819282511210763 1.0 - - - - - - - 241.22222222222223 6 9 UBE2L6 ubiquitin-conjugating enzyme E2L 6 85 11 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9569.[MT7]-NLSSDDANVLVWHALLLPDQPPYHLK[MT7].4y3_1.heavy 811.691 / 541.358 8696.0 40.80324935913086 39 13 10 6 10 1.3891241740390445 47.9918699224889 0.0373992919921875 3 0.9234619152969185 4.432143971151458 8696.0 22.82558233433977 0.0 - - - - - - - 645.1428571428571 17 7 UBE2L6 ubiquitin-conjugating enzyme E2L 6 87 11 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9569.[MT7]-NLSSDDANVLVWHALLLPDQPPYHLK[MT7].4b9_1.heavy 811.691 / 1060.5 4850.0 40.80324935913086 39 13 10 6 10 1.3891241740390445 47.9918699224889 0.0373992919921875 3 0.9234619152969185 4.432143971151458 4850.0 40.07784431137724 0.0 - - - - - - - 273.27272727272725 9 11 UBE2L6 ubiquitin-conjugating enzyme E2L 6 89 12 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9565.[MT7]-ARPSIIQDTVTLC[CAM]SYPFIFDAQAK[MT7].3y6_1.heavy 1010.54 / 823.443 8890.0 40.21870040893555 39 13 10 6 10 6.994206928966578 14.297546671924877 0.037200927734375 3 0.9186410845529741 4.297049791855127 8890.0 18.07611940298507 1.0 - - - - - - - 257.9230769230769 17 13 HERC3 hect domain and RLD 3 91 12 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9565.[MT7]-ARPSIIQDTVTLC[CAM]SYPFIFDAQAK[MT7].3y4_1.heavy 1010.54 / 561.348 11406.0 40.21870040893555 39 13 10 6 10 6.994206928966578 14.297546671924877 0.037200927734375 3 0.9186410845529741 4.297049791855127 11406.0 22.443270896232143 0.0 - - - - - - - 234.8 22 10 HERC3 hect domain and RLD 3 93 12 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9565.[MT7]-ARPSIIQDTVTLC[CAM]SYPFIFDAQAK[MT7].3b8_1.heavy 1010.54 / 1025.59 3690.0 40.21870040893555 39 13 10 6 10 6.994206928966578 14.297546671924877 0.037200927734375 3 0.9186410845529741 4.297049791855127 3690.0 30.01173773987207 0.0 - - - - - - - 263.42857142857144 7 7 HERC3 hect domain and RLD 3 95 12 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9565.[MT7]-ARPSIIQDTVTLC[CAM]SYPFIFDAQAK[MT7].3y9_1.heavy 1010.54 / 1180.65 17948.0 40.21870040893555 39 13 10 6 10 6.994206928966578 14.297546671924877 0.037200927734375 3 0.9186410845529741 4.297049791855127 17948.0 56.98948520501433 0.0 - - - - - - - 608.0 35 8 HERC3 hect domain and RLD 3 97 13 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9566.[MT7]-SGPFTHPDFEPSTESLQFLLDTC[CAM]K[MT7].4y5_1.heavy 761.126 / 780.404 13156.0 39.6233491897583 42 18 10 6 8 6.448311754414681 15.50793507022011 0.037403106689453125 4 0.9872592589409347 10.922016831874645 13156.0 15.477647058823528 1.0 - - - - - - - 250.0 29 6 UBA3 ubiquitin-like modifier activating enzyme 3 99 13 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9566.[MT7]-SGPFTHPDFEPSTESLQFLLDTC[CAM]K[MT7].4y4_1.heavy 761.126 / 667.32 15321.0 39.6233491897583 42 18 10 6 8 6.448311754414681 15.50793507022011 0.037403106689453125 4 0.9872592589409347 10.922016831874645 15321.0 5.174071294559099 1.0 - - - - - - - 749.5 30 10 UBA3 ubiquitin-like modifier activating enzyme 3 101 13 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9566.[MT7]-SGPFTHPDFEPSTESLQFLLDTC[CAM]K[MT7].4y3_1.heavy 761.126 / 552.293 13323.0 39.6233491897583 42 18 10 6 8 6.448311754414681 15.50793507022011 0.037403106689453125 4 0.9872592589409347 10.922016831874645 13323.0 17.45141015531876 0.0 - - - - - - - 766.2 26 10 UBA3 ubiquitin-like modifier activating enzyme 3 103 13 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9566.[MT7]-SGPFTHPDFEPSTESLQFLLDTC[CAM]K[MT7].4b10_2.heavy 761.126 / 630.294 8160.0 39.6233491897583 42 18 10 6 8 6.448311754414681 15.50793507022011 0.037403106689453125 4 0.9872592589409347 10.922016831874645 8160.0 5.942342342342342 1.0 - - - - - - - 291.5 17 4 UBA3 ubiquitin-like modifier activating enzyme 3 105 14 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9567.[MT7]-AC[CAM]HILEC[CAM]PEGLAQDVISTIGQAFELR.4b4_1.heavy 768.641 / 626.32 N/A N/A - - - - - - - - - 0.0 - - - - - - - SHC1 SHC (Src homology 2 domain containing) transforming protein 1 107 14 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9567.[MT7]-AC[CAM]HILEC[CAM]PEGLAQDVISTIGQAFELR.4y7_1.heavy 768.641 / 820.431 N/A N/A - - - - - - - - - 0.0 - - - - - - - SHC1 SHC (Src homology 2 domain containing) transforming protein 1 109 14 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9567.[MT7]-AC[CAM]HILEC[CAM]PEGLAQDVISTIGQAFELR.4b6_1.heavy 768.641 / 868.447 N/A N/A - - - - - - - - - 0.0 - - - - - - - SHC1 SHC (Src homology 2 domain containing) transforming protein 1 111 14 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9567.[MT7]-AC[CAM]HILEC[CAM]PEGLAQDVISTIGQAFELR.4b3_1.heavy 768.641 / 513.236 N/A N/A - - - - - - - - - 0.0 - - - - - - - SHC1 SHC (Src homology 2 domain containing) transforming protein 1 113 15 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9568.[MT7]-TEIAVAVDSAFPLLHALADHDVVPEDK[MT7].4b8_1.heavy 790.925 / 943.522 1097.0 46.60335063934326 38 12 10 6 10 1.520866582955691 52.37763608222406 0.039798736572265625 3 0.899451464362267 3.858926609602465 1097.0 3.622802320226048 1.0 - - - - - - - 240.0 2 16 AIRE autoimmune regulator 115 15 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9568.[MT7]-TEIAVAVDSAFPLLHALADHDVVPEDK[MT7].4y4_1.heavy 790.925 / 632.337 13168.0 46.60335063934326 38 12 10 6 10 1.520866582955691 52.37763608222406 0.039798736572265625 3 0.899451464362267 3.858926609602465 13168.0 78.13879613051867 0.0 - - - - - - - 219.33333333333334 26 9 AIRE autoimmune regulator 117 15 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9568.[MT7]-TEIAVAVDSAFPLLHALADHDVVPEDK[MT7].4b4_1.heavy 790.925 / 559.321 5816.0 46.60335063934326 38 12 10 6 10 1.520866582955691 52.37763608222406 0.039798736572265625 3 0.899451464362267 3.858926609602465 5816.0 24.431422266750314 1.0 - - - - - - - 231.66666666666666 11 9 AIRE autoimmune regulator 119 15 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9568.[MT7]-TEIAVAVDSAFPLLHALADHDVVPEDK[MT7].4b5_1.heavy 790.925 / 658.389 5157.0 46.60335063934326 38 12 10 6 10 1.520866582955691 52.37763608222406 0.039798736572265625 3 0.899451464362267 3.858926609602465 5157.0 14.10729483282675 1.0 - - - - - - - 312.0769230769231 10 13 AIRE autoimmune regulator 121 16 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9561.[MT7]-NIRFPLMTPQDLINYVQTVDFMR.4b8_1.heavy 739.639 / 1117.63 N/A N/A - - - - - - - - - 0.0 - - - - - - - KLHL9 kelch-like 9 (Drosophila) 123 16 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9561.[MT7]-NIRFPLMTPQDLINYVQTVDFMR.4b7_1.heavy 739.639 / 1016.58 N/A N/A - - - - - - - - - 0.0 - - - - - - - KLHL9 kelch-like 9 (Drosophila) 125 16 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9561.[MT7]-NIRFPLMTPQDLINYVQTVDFMR.4b11_2.heavy 739.639 / 729.388 N/A N/A - - - - - - - - - 0.0 - - - - - - - KLHL9 kelch-like 9 (Drosophila) 127 16 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9561.[MT7]-NIRFPLMTPQDLINYVQTVDFMR.4y7_1.heavy 739.639 / 896.43 N/A N/A - - - - - - - - - 0.0 - - - - - - - KLHL9 kelch-like 9 (Drosophila) 129 17 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9461.[MT7]-MC[CAM]GTLPYVAPELLK[MT7].3y3_1.heavy 627.347 / 517.383 14394.0 37.43280029296875 46 16 10 10 10 2.949060502528938 26.54889239120351 0.0 3 0.9653952567162661 6.615065433531948 14394.0 16.952485360409646 0.0 - - - - - - - 330.0 28 9 CHEK1 CHK1 checkpoint homolog (S. pombe) 131 17 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9461.[MT7]-MC[CAM]GTLPYVAPELLK[MT7].3b4_1.heavy 627.347 / 594.25 8449.0 37.43280029296875 46 16 10 10 10 2.949060502528938 26.54889239120351 0.0 3 0.9653952567162661 6.615065433531948 8449.0 41.40785274903438 0.0 - - - - - - - 270.93333333333334 16 15 CHEK1 CHK1 checkpoint homolog (S. pombe) 133 17 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9461.[MT7]-MC[CAM]GTLPYVAPELLK[MT7].3b5_1.heavy 627.347 / 707.334 27067.0 37.43280029296875 46 16 10 10 10 2.949060502528938 26.54889239120351 0.0 3 0.9653952567162661 6.615065433531948 27067.0 38.17597720919256 0.0 - - - - - - - 326.8181818181818 54 11 CHEK1 CHK1 checkpoint homolog (S. pombe) 135 17 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9461.[MT7]-MC[CAM]GTLPYVAPELLK[MT7].3y5_1.heavy 627.347 / 743.478 31761.0 37.43280029296875 46 16 10 10 10 2.949060502528938 26.54889239120351 0.0 3 0.9653952567162661 6.615065433531948 31761.0 47.43855431309905 0.0 - - - - - - - 328.4 63 10 CHEK1 CHK1 checkpoint homolog (S. pombe) 137 18 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9564.[MT7]-ARPPFGAMEATLPSPAVVAQELWNK[MT7].4b11_2.heavy 742.904 / 637.328 8359.0 43.489423751831055 34 13 10 3 8 1.9832316753975225 34.42122709329935 0.0792999267578125 4 0.922953478752801 4.417303110383561 8359.0 2.5203015075376887 1.0 - - - - - - - 274.0 16 6 UBOX5 U-box domain containing 5 139 18 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9564.[MT7]-ARPPFGAMEATLPSPAVVAQELWNK[MT7].4b9_1.heavy 742.904 / 1101.56 1194.0 43.489423751831055 34 13 10 3 8 1.9832316753975225 34.42122709329935 0.0792999267578125 4 0.922953478752801 4.417303110383561 1194.0 0.8 2.0 - - - - - - - 273.6666666666667 2 6 UBOX5 U-box domain containing 5 141 18 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9564.[MT7]-ARPPFGAMEATLPSPAVVAQELWNK[MT7].4y3_1.heavy 742.904 / 591.337 7165.0 43.489423751831055 34 13 10 3 8 1.9832316753975225 34.42122709329935 0.0792999267578125 4 0.922953478752801 4.417303110383561 7165.0 7.996651785714286 1.0 - - - - - - - 299.0 16 4 UBOX5 U-box domain containing 5 143 18 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9564.[MT7]-ARPPFGAMEATLPSPAVVAQELWNK[MT7].4b9_2.heavy 742.904 / 551.285 4926.0 43.489423751831055 34 13 10 3 8 1.9832316753975225 34.42122709329935 0.0792999267578125 4 0.922953478752801 4.417303110383561 4926.0 8.531692869492156 2.0 - - - - - - - 282.0 9 9 UBOX5 U-box domain containing 5 145 19 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9465.[MT7]-IVSGGEEGLVSVWDYR.3y7_1.heavy 637.331 / 924.457 8186.0 38.29750061035156 48 18 10 10 10 3.4955374780257107 22.714209492057737 0.0 3 0.983326642731941 9.544332479802877 8186.0 33.136152583343026 0.0 - - - - - - - 301.25 16 16 FBXW8 F-box and WD repeat domain containing 8 147 19 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9465.[MT7]-IVSGGEEGLVSVWDYR.3b6_1.heavy 637.331 / 687.379 13001.0 38.29750061035156 48 18 10 10 10 3.4955374780257107 22.714209492057737 0.0 3 0.983326642731941 9.544332479802877 13001.0 18.22570093457944 0.0 - - - - - - - 310.0 26 14 FBXW8 F-box and WD repeat domain containing 8 149 19 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9465.[MT7]-IVSGGEEGLVSVWDYR.3y6_1.heavy 637.331 / 825.389 21668.0 38.29750061035156 48 18 10 10 10 3.4955374780257107 22.714209492057737 0.0 3 0.983326642731941 9.544332479802877 21668.0 83.3079721954302 0.0 - - - - - - - 335.90909090909093 43 11 FBXW8 F-box and WD repeat domain containing 8 151 19 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9465.[MT7]-IVSGGEEGLVSVWDYR.3b8_1.heavy 637.331 / 873.443 18298.0 38.29750061035156 48 18 10 10 10 3.4955374780257107 22.714209492057737 0.0 3 0.983326642731941 9.544332479802877 18298.0 22.420120625950883 0.0 - - - - - - - 321.3333333333333 36 12 FBXW8 F-box and WD repeat domain containing 8 153 20 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9560.[MT7]-EALSDLQSPLNPC[CAM]VILSELYVEK[MT7].4y4_1.heavy 727.142 / 682.389 4288.0 47.173874855041504 36 13 10 3 10 1.6674193268075492 53.36307336265927 0.07490158081054688 3 0.9011256051970332 3.892022791553645 4288.0 16.31775233330126 0.0 - - - - - - - 273.6666666666667 8 15 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 155 20 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9560.[MT7]-EALSDLQSPLNPC[CAM]VILSELYVEK[MT7].4b5_1.heavy 727.142 / 660.332 5109.0 47.173874855041504 36 13 10 3 10 1.6674193268075492 53.36307336265927 0.07490158081054688 3 0.9011256051970332 3.892022791553645 5109.0 8.686234003656306 0.0 - - - - - - - 215.45454545454547 10 11 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 157 20 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9560.[MT7]-EALSDLQSPLNPC[CAM]VILSELYVEK[MT7].4y3_1.heavy 727.142 / 519.326 2828.0 47.173874855041504 36 13 10 3 10 1.6674193268075492 53.36307336265927 0.07490158081054688 3 0.9011256051970332 3.892022791553645 2828.0 4.459995724770207 1.0 - - - - - - - 237.13333333333333 5 15 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 159 20 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9560.[MT7]-EALSDLQSPLNPC[CAM]VILSELYVEK[MT7].4b6_1.heavy 727.142 / 773.416 2007.0 47.173874855041504 36 13 10 3 10 1.6674193268075492 53.36307336265927 0.07490158081054688 3 0.9011256051970332 3.892022791553645 2007.0 3.031615874660188 1.0 - - - - - - - 232.0909090909091 4 11 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 161 21 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9466.[MT7]-AHTLLSPPSANNATFAR.3y7_1.heavy 638.01 / 793.395 9027.0 27.563100814819336 47 17 10 10 10 3.2623495494877366 30.652754550996008 0.0 3 0.9783431518601214 8.371009330479447 9027.0 11.016810177819181 0.0 - - - - - - - 338.5 18 2 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 163 21 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9466.[MT7]-AHTLLSPPSANNATFAR.3b4_1.heavy 638.01 / 567.337 17152.0 27.563100814819336 47 17 10 10 10 3.2623495494877366 30.652754550996008 0.0 3 0.9783431518601214 8.371009330479447 17152.0 8.613104937273764 0.0 - - - - - - - 2095.5714285714284 34 7 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 165 21 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9466.[MT7]-AHTLLSPPSANNATFAR.3b5_1.heavy 638.01 / 680.421 9253.0 27.563100814819336 47 17 10 10 10 3.2623495494877366 30.652754550996008 0.0 3 0.9783431518601214 8.371009330479447 9253.0 1.455679652245859 1.0 - - - - - - - 903.0 22 3 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 167 21 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9466.[MT7]-AHTLLSPPSANNATFAR.3y9_1.heavy 638.01 / 951.464 10607.0 27.563100814819336 47 17 10 10 10 3.2623495494877366 30.652754550996008 0.0 3 0.9783431518601214 8.371009330479447 10607.0 11.02222054170988 0.0 - - - - - - - 301.0 21 3 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 169 22 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9467.[MT7]-IC[CAM]ITHVTGGGIPC[CAM]IK[MT7].3y3_1.heavy 638.69 / 564.33 15116.0 30.857900619506836 43 13 10 10 10 3.4487428573649517 28.99607310137528 0.0 3 0.9226722066491003 4.409155672226214 15116.0 25.898853834337704 0.0 - - - - - - - 1180.4285714285713 30 7 UBOX5 U-box domain containing 5 171 22 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9467.[MT7]-IC[CAM]ITHVTGGGIPC[CAM]IK[MT7].3b4_1.heavy 638.69 / 632.356 23178.0 30.857900619506836 43 13 10 10 10 3.4487428573649517 28.99607310137528 0.0 3 0.9226722066491003 4.409155672226214 23178.0 23.515282350398472 0.0 - - - - - - - 302.5 46 6 UBOX5 U-box domain containing 5 173 22 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9467.[MT7]-IC[CAM]ITHVTGGGIPC[CAM]IK[MT7].3b3_1.heavy 638.69 / 531.308 9674.0 30.857900619506836 43 13 10 10 10 3.4487428573649517 28.99607310137528 0.0 3 0.9226722066491003 4.409155672226214 9674.0 14.662555141990623 0.0 - - - - - - - 302.5 19 4 UBOX5 U-box domain containing 5 175 22 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9467.[MT7]-IC[CAM]ITHVTGGGIPC[CAM]IK[MT7].3y4_1.heavy 638.69 / 661.382 102586.0 30.857900619506836 43 13 10 10 10 3.4487428573649517 28.99607310137528 0.0 3 0.9226722066491003 4.409155672226214 102586.0 91.12831233529693 0.0 - - - - - - - 662.4285714285714 205 7 UBOX5 U-box domain containing 5 177 23 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7209.[MT7]-EAGSALLALQQTALQEDQENINPEK[MT7].4b8_1.heavy 750.395 / 857.485 39761.0 36.838600158691406 41 15 10 6 10 2.112763884300363 37.571899883662724 0.03399658203125 3 0.9525891939498907 5.645374196075916 39761.0 117.43241783081784 0.0 - - - - - - - 712.625 79 8 CCNA2 cyclin A2 179 23 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7209.[MT7]-EAGSALLALQQTALQEDQENINPEK[MT7].4b7_1.heavy 750.395 / 786.448 27432.0 36.838600158691406 41 15 10 6 10 2.112763884300363 37.571899883662724 0.03399658203125 3 0.9525891939498907 5.645374196075916 27432.0 47.033549582947174 0.0 - - - - - - - 667.5555555555555 54 9 CCNA2 cyclin A2 181 23 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7209.[MT7]-EAGSALLALQQTALQEDQENINPEK[MT7].4y3_1.heavy 750.395 / 517.31 78597.0 36.838600158691406 41 15 10 6 10 2.112763884300363 37.571899883662724 0.03399658203125 3 0.9525891939498907 5.645374196075916 78597.0 78.19803372294349 0.0 - - - - - - - 1250.111111111111 157 9 CCNA2 cyclin A2 183 23 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7209.[MT7]-EAGSALLALQQTALQEDQENINPEK[MT7].4b6_1.heavy 750.395 / 673.364 57792.0 36.838600158691406 41 15 10 6 10 2.112763884300363 37.571899883662724 0.03399658203125 3 0.9525891939498907 5.645374196075916 57792.0 112.02177888435239 0.0 - - - - - - - 739.8 115 10 CCNA2 cyclin A2 185 24 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7207.[MT7]-IEREDALAFNSAISLPGPR.3y7_1.heavy 734.066 / 739.446 20573.0 34.1255989074707 39 13 10 6 10 2.033797221537213 40.6811655883556 0.0373992919921875 3 0.928203747964234 4.578025371487813 20573.0 18.20652912605175 0.0 - - - - - - - 321.3333333333333 41 3 CCNA2 cyclin A2 187 24 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7207.[MT7]-IEREDALAFNSAISLPGPR.3y6_1.heavy 734.066 / 626.362 34556.0 34.1255989074707 39 13 10 6 10 2.033797221537213 40.6811655883556 0.0373992919921875 3 0.928203747964234 4.578025371487813 34556.0 14.306681859855926 0.0 - - - - - - - 321.0 69 2 CCNA2 cyclin A2 189 24 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7207.[MT7]-IEREDALAFNSAISLPGPR.3b5_1.heavy 734.066 / 787.407 7393.0 34.1255989074707 39 13 10 6 10 2.033797221537213 40.6811655883556 0.0373992919921875 3 0.928203747964234 4.578025371487813 7393.0 4.024183514774494 1.0 - - - - - - - 819.8 14 10 CCNA2 cyclin A2 191 24 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7207.[MT7]-IEREDALAFNSAISLPGPR.3b8_1.heavy 734.066 / 1042.56 13822.0 34.1255989074707 39 13 10 6 10 2.033797221537213 40.6811655883556 0.0373992919921875 3 0.928203747964234 4.578025371487813 13822.0 13.244583369574784 0.0 - - - - - - - 281.125 27 8 CCNA2 cyclin A2 193 25 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7205.[MT7]-DLPVNDEHVTVPPWK[MT7].3b6_1.heavy 678.701 / 798.411 4923.0 30.713150024414062 41 18 10 5 8 5.863202552227096 17.05552539064435 0.041900634765625 4 0.9811953681088507 8.985598944912748 4923.0 1.2285092491838958 2.0 - - - - - - - 275.8 9 5 CCNA2 cyclin A2 195 25 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7205.[MT7]-DLPVNDEHVTVPPWK[MT7].3y3_1.heavy 678.701 / 574.347 9059.0 30.713150024414062 41 18 10 5 8 5.863202552227096 17.05552539064435 0.041900634765625 4 0.9811953681088507 8.985598944912748 9059.0 1.0256967829975128 2.0 - - - - - - - 731.7142857142857 18 7 CCNA2 cyclin A2 197 25 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7205.[MT7]-DLPVNDEHVTVPPWK[MT7].3y4_1.heavy 678.701 / 671.4 29146.0 30.713150024414062 41 18 10 5 8 5.863202552227096 17.05552539064435 0.041900634765625 4 0.9811953681088507 8.985598944912748 29146.0 1.6673056417433243 1.0 - - - - - - - 197.0 62 2 CCNA2 cyclin A2 199 25 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A7205.[MT7]-DLPVNDEHVTVPPWK[MT7].3b7_1.heavy 678.701 / 927.454 7286.0 30.713150024414062 41 18 10 5 8 5.863202552227096 17.05552539064435 0.041900634765625 4 0.9811953681088507 8.985598944912748 7286.0 1.3036118615678967 1.0 - - - - - - - 295.5 14 4 CCNA2 cyclin A2 201 26 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 TPX_ECO57.AQTFTLVAK.2y7.peptide 489.78 / 779.47 971558.0 27.428600311279297 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 971558.0 1155.0263142548258 0.0 - - - - - - - 2921.0 1943 1 203 26 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 TPX_ECO57.AQTFTLVAK.2y6.peptide 489.78 / 678.42 367430.0 27.428600311279297 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 367430.0 180.64967741935482 0.0 - - - - - - - 1124.0 734 1 205 26 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 TPX_ECO57.AQTFTLVAK.2y5.peptide 489.78 / 531.35 364733.0 27.428600311279297 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 364733.0 382.8147700296735 0.0 - - - - - - - 449.0 729 1 207 27 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9559.[MT7]-ELGLVDGQELAVADVTTPQTVLFK[MT7].4b4_1.heavy 708.647 / 557.341 6095.0 40.924800872802734 41 15 10 6 10 2.278561317476811 34.88371650332994 0.0373992919921875 3 0.9590249600052217 6.075869999921442 6095.0 15.05175493905002 0.0 - - - - - - - 299.45454545454544 12 11 UBA3 ubiquitin-like modifier activating enzyme 3 209 27 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9559.[MT7]-ELGLVDGQELAVADVTTPQTVLFK[MT7].4b5_1.heavy 708.647 / 656.41 4118.0 40.924800872802734 41 15 10 6 10 2.278561317476811 34.88371650332994 0.0373992919921875 3 0.9590249600052217 6.075869999921442 4118.0 3.3929748482220297 0.0 - - - - - - - 682.5714285714286 8 7 UBA3 ubiquitin-like modifier activating enzyme 3 211 27 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9559.[MT7]-ELGLVDGQELAVADVTTPQTVLFK[MT7].4b9_1.heavy 708.647 / 1085.56 4612.0 40.924800872802734 41 15 10 6 10 2.278561317476811 34.88371650332994 0.0373992919921875 3 0.9590249600052217 6.075869999921442 4612.0 13.549544380435803 0.0 - - - - - - - 214.2 9 10 UBA3 ubiquitin-like modifier activating enzyme 3 213 27 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9559.[MT7]-ELGLVDGQELAVADVTTPQTVLFK[MT7].4y3_1.heavy 708.647 / 551.367 6260.0 40.924800872802734 41 15 10 6 10 2.278561317476811 34.88371650332994 0.0373992919921875 3 0.9590249600052217 6.075869999921442 6260.0 5.89251012145749 0.0 - - - - - - - 352.85714285714283 12 14 UBA3 ubiquitin-like modifier activating enzyme 3 215 28 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9558.[MT7]-ELGLVDGQELAVADVTTPQTVLFK[MT7].3b9_1.heavy 944.526 / 1085.56 22918.0 40.90610122680664 50 20 10 10 10 5.331210961722422 15.014461266474143 0.0 3 0.9939859762781535 15.906033991002957 22918.0 34.45902491909349 0.0 - - - - - - - 330.0 45 7 UBA3 ubiquitin-like modifier activating enzyme 3 217 28 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9558.[MT7]-ELGLVDGQELAVADVTTPQTVLFK[MT7].3b6_1.heavy 944.526 / 771.437 17477.0 40.90610122680664 50 20 10 10 10 5.331210961722422 15.014461266474143 0.0 3 0.9939859762781535 15.906033991002957 17477.0 17.623326183246327 0.0 - - - - - - - 297.0 34 5 UBA3 ubiquitin-like modifier activating enzyme 3 219 28 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9558.[MT7]-ELGLVDGQELAVADVTTPQTVLFK[MT7].3b4_1.heavy 944.526 / 557.341 22259.0 40.90610122680664 50 20 10 10 10 5.331210961722422 15.014461266474143 0.0 3 0.9939859762781535 15.906033991002957 22259.0 41.51200263451335 0.0 - - - - - - - 412.5 44 8 UBA3 ubiquitin-like modifier activating enzyme 3 221 28 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9558.[MT7]-ELGLVDGQELAVADVTTPQTVLFK[MT7].3b5_1.heavy 944.526 / 656.41 23083.0 40.90610122680664 50 20 10 10 10 5.331210961722422 15.014461266474143 0.0 3 0.9939859762781535 15.906033991002957 23083.0 8.16478019201617 0.0 - - - - - - - 198.0 46 5 UBA3 ubiquitin-like modifier activating enzyme 3 223 29 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9453.[MT7]-ELMNTEQALDQLIQSC[CAM]SLSFK[MT7].3y7_1.heavy 915.134 / 972.494 6480.0 45.036800384521484 50 20 10 10 10 8.095815709143546 12.352059828518378 0.0 3 0.9908483829894488 12.890853895449888 6480.0 32.7828424452223 0.0 - - - - - - - 265.8666666666667 12 15 E2F2 E2F transcription factor 2 225 29 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9453.[MT7]-ELMNTEQALDQLIQSC[CAM]SLSFK[MT7].3b6_1.heavy 915.134 / 862.41 5109.0 45.036800384521484 50 20 10 10 10 8.095815709143546 12.352059828518378 0.0 3 0.9908483829894488 12.890853895449888 5109.0 19.53441176470588 0.0 - - - - - - - 293.64285714285717 10 14 E2F2 E2F transcription factor 2 227 29 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9453.[MT7]-ELMNTEQALDQLIQSC[CAM]SLSFK[MT7].3y3_1.heavy 915.134 / 525.315 7228.0 45.036800384521484 50 20 10 10 10 8.095815709143546 12.352059828518378 0.0 3 0.9908483829894488 12.890853895449888 7228.0 12.569793612954491 0.0 - - - - - - - 256.1666666666667 14 18 E2F2 E2F transcription factor 2 229 29 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9453.[MT7]-ELMNTEQALDQLIQSC[CAM]SLSFK[MT7].3b7_1.heavy 915.134 / 990.468 4112.0 45.036800384521484 50 20 10 10 10 8.095815709143546 12.352059828518378 0.0 3 0.9908483829894488 12.890853895449888 4112.0 40.708360213903745 0.0 - - - - - - - 249.4 8 10 E2F2 E2F transcription factor 2 231 30 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9592.[MT7]-QPAFTIHVDEAEK[MT7].3y7_1.heavy 591.652 / 971.491 6798.0 27.473400115966797 44 18 10 10 6 4.698696722640841 21.282497233359702 0.0 5 0.9888057685029283 11.653577294427915 6798.0 2.2 1.0 - - - - - - - 340.0 13 6 CCNA2 cyclin A2 233 30 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9592.[MT7]-QPAFTIHVDEAEK[MT7].3y6_1.heavy 591.652 / 834.432 19487.0 27.473400115966797 44 18 10 10 6 4.698696722640841 21.282497233359702 0.0 5 0.9888057685029283 11.653577294427915 19487.0 44.36628691397124 0.0 - - - - - - - 340.0 38 6 CCNA2 cyclin A2 235 30 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9592.[MT7]-QPAFTIHVDEAEK[MT7].3y4_1.heavy 591.652 / 620.337 7251.0 27.473400115966797 44 18 10 10 6 4.698696722640841 21.282497233359702 0.0 5 0.9888057685029283 11.653577294427915 7251.0 16.061421635780796 2.0 - - - - - - - 453.0 23 4 CCNA2 cyclin A2 237 30 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9592.[MT7]-QPAFTIHVDEAEK[MT7].3y5_1.heavy 591.652 / 735.364 23112.0 27.473400115966797 44 18 10 10 6 4.698696722640841 21.282497233359702 0.0 5 0.9888057685029283 11.653577294427915 23112.0 22.651104201474087 0.0 - - - - - - - 776.8571428571429 46 7 CCNA2 cyclin A2 239 31 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9452.[MT7]-FILIAAYLASYNPAR.3y7_1.heavy 609.681 / 778.384 9525.0 48.368226051330566 40 14 10 6 10 3.6489743737945295 21.887352058900312 0.036899566650390625 3 0.930898484749592 4.667511722058872 9525.0 46.07312037586428 0.0 - - - - - - - 230.33333333333334 19 12 ORC5 origin recognition complex, subunit 5 241 31 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9452.[MT7]-FILIAAYLASYNPAR.3y6_1.heavy 609.681 / 707.347 6606.0 48.368226051330566 40 14 10 6 10 3.6489743737945295 21.887352058900312 0.036899566650390625 3 0.930898484749592 4.667511722058872 6606.0 85.14876623376622 0.0 - - - - - - - 203.47058823529412 13 17 ORC5 origin recognition complex, subunit 5 243 31 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9452.[MT7]-FILIAAYLASYNPAR.3b5_1.heavy 609.681 / 702.467 6529.0 48.368226051330566 40 14 10 6 10 3.6489743737945295 21.887352058900312 0.036899566650390625 3 0.930898484749592 4.667511722058872 6529.0 77.81305078661177 0.0 - - - - - - - 265.3636363636364 13 11 ORC5 origin recognition complex, subunit 5 245 31 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9452.[MT7]-FILIAAYLASYNPAR.3b3_1.heavy 609.681 / 518.346 4609.0 48.368226051330566 40 14 10 6 10 3.6489743737945295 21.887352058900312 0.036899566650390625 3 0.930898484749592 4.667511722058872 4609.0 68.98535714285714 0.0 - - - - - - - 220.26666666666668 9 15 ORC5 origin recognition complex, subunit 5 247 32 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9315.[MT7]-GLQEEPVEGFR.2y8_1.heavy 702.866 / 962.458 27267.0 27.82939910888672 50 20 10 10 10 6.465625106892311 15.46640863748823 0.0 3 0.9936830472605657 15.519569586220229 27267.0 105.53 0.0 - - - - - - - 322.55555555555554 54 9 CDC34 cell division cycle 34 homolog (S. cerevisiae) 249 32 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9315.[MT7]-GLQEEPVEGFR.2b4_1.heavy 702.866 / 572.316 35313.0 27.82939910888672 50 20 10 10 10 6.465625106892311 15.46640863748823 0.0 3 0.9936830472605657 15.519569586220229 35313.0 36.12583120204604 0.0 - - - - - - - 351.0 70 7 CDC34 cell division cycle 34 homolog (S. cerevisiae) 251 32 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9315.[MT7]-GLQEEPVEGFR.2b5_1.heavy 702.866 / 701.359 40900.0 27.82939910888672 50 20 10 10 10 6.465625106892311 15.46640863748823 0.0 3 0.9936830472605657 15.519569586220229 40900.0 29.00217256039572 0.0 - - - - - - - 335.0 81 4 CDC34 cell division cycle 34 homolog (S. cerevisiae) 253 32 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9315.[MT7]-GLQEEPVEGFR.2y7_1.heavy 702.866 / 833.415 30619.0 27.82939910888672 50 20 10 10 10 6.465625106892311 15.46640863748823 0.0 3 0.9936830472605657 15.519569586220229 30619.0 53.46122649955237 0.0 - - - - - - - 347.44444444444446 61 9 CDC34 cell division cycle 34 homolog (S. cerevisiae) 255 33 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9587.[MT7]-TRAALAVLK[MT7].3y3_1.heavy 410.943 / 503.367 N/A N/A - - - - - - - - - 0.0 - - - - - - - CCNA2 cyclin A2 257 33 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9587.[MT7]-TRAALAVLK[MT7].3b6_1.heavy 410.943 / 728.453 N/A N/A - - - - - - - - - 0.0 - - - - - - - CCNA2 cyclin A2 259 33 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9587.[MT7]-TRAALAVLK[MT7].3b4_1.heavy 410.943 / 544.332 N/A N/A - - - - - - - - - 0.0 - - - - - - - CCNA2 cyclin A2 261 33 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9587.[MT7]-TRAALAVLK[MT7].3b5_1.heavy 410.943 / 657.416 N/A N/A - - - - - - - - - 0.0 - - - - - - - CCNA2 cyclin A2 263 34 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9443.[MT7]-LGNLFLNEDLEVK[MT7].3b6_1.heavy 598.008 / 802.494 13937.0 39.160701751708984 45 15 10 10 10 2.033825796788488 43.31157607649552 0.0 3 0.9558610326246817 5.852491028456046 13937.0 57.72100903614458 0.0 - - - - - - - 321.625 27 16 PLK1 polo-like kinase 1 265 34 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9443.[MT7]-LGNLFLNEDLEVK[MT7].3y3_1.heavy 598.008 / 519.326 28537.0 39.160701751708984 45 15 10 10 10 2.033825796788488 43.31157607649552 0.0 3 0.9558610326246817 5.852491028456046 28537.0 35.974303500511084 0.0 - - - - - - - 806.0 57 7 PLK1 polo-like kinase 1 267 34 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9443.[MT7]-LGNLFLNEDLEVK[MT7].3b4_1.heavy 598.008 / 542.342 30196.0 39.160701751708984 45 15 10 10 10 2.033825796788488 43.31157607649552 0.0 3 0.9558610326246817 5.852491028456046 30196.0 42.997307053934726 0.0 - - - - - - - 377.27272727272725 60 11 PLK1 polo-like kinase 1 269 34 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9443.[MT7]-LGNLFLNEDLEVK[MT7].3b5_1.heavy 598.008 / 689.41 32353.0 39.160701751708984 45 15 10 10 10 2.033825796788488 43.31157607649552 0.0 3 0.9558610326246817 5.852491028456046 32353.0 106.80387951807229 0.0 - - - - - - - 348.6 64 10 PLK1 polo-like kinase 1 271 35 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9300.[MT7]-FVQSEAQQER.2y8_1.heavy 683.348 / 975.449 8786.0 20.666900634765625 50 20 10 10 10 51.92035218370722 1.9260269970083201 0.0 3 0.9978420696609995 26.56229100118068 8786.0 43.85169340463458 0.0 - - - - - - - 249.33333333333334 17 9 CDC7 cell division cycle 7 homolog (S. cerevisiae) 273 35 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9300.[MT7]-FVQSEAQQER.2y5_1.heavy 683.348 / 631.316 7290.0 20.666900634765625 50 20 10 10 10 51.92035218370722 1.9260269970083201 0.0 3 0.9978420696609995 26.56229100118068 7290.0 8.522312345153683 4.0 - - - - - - - 1261.875 21 8 CDC7 cell division cycle 7 homolog (S. cerevisiae) 275 35 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9300.[MT7]-FVQSEAQQER.2y9_1.heavy 683.348 / 1074.52 13833.0 20.666900634765625 50 20 10 10 10 51.92035218370722 1.9260269970083201 0.0 3 0.9978420696609995 26.56229100118068 13833.0 96.83099999999999 0.0 - - - - - - - 293.85714285714283 27 7 CDC7 cell division cycle 7 homolog (S. cerevisiae) 277 35 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9300.[MT7]-FVQSEAQQER.2y7_1.heavy 683.348 / 847.39 11216.0 20.666900634765625 50 20 10 10 10 51.92035218370722 1.9260269970083201 0.0 3 0.9978420696609995 26.56229100118068 11216.0 40.4855614973262 0.0 - - - - - - - 293.85714285714283 22 7 CDC7 cell division cycle 7 homolog (S. cerevisiae) 279 36 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9432.[MT7]-DIK[MT7]PENLLLDER.3y7_1.heavy 581.668 / 872.484 11261.0 30.89900016784668 39 9 10 10 10 1.4921346684601848 63.01259000048061 0.0 3 0.8018332877686963 2.7252060387474595 11261.0 20.84811414313826 0.0 - - - - - - - 361.8 22 5 CHEK1 CHK1 checkpoint homolog (S. pombe) 281 36 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9432.[MT7]-DIK[MT7]PENLLLDER.3y4_1.heavy 581.668 / 532.273 27349.0 30.89900016784668 39 9 10 10 10 1.4921346684601848 63.01259000048061 0.0 3 0.8018332877686963 2.7252060387474595 27349.0 27.487251110604383 0.0 - - - - - - - 1161.888888888889 54 9 CHEK1 CHK1 checkpoint homolog (S. pombe) 283 36 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9432.[MT7]-DIK[MT7]PENLLLDER.3b10_2.heavy 581.668 / 720.421 79835.0 30.89900016784668 39 9 10 10 10 1.4921346684601848 63.01259000048061 0.0 3 0.8018332877686963 2.7252060387474595 79835.0 93.93405445690789 0.0 - - - - - - - 301.5 159 4 CHEK1 CHK1 checkpoint homolog (S. pombe) 285 36 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9432.[MT7]-DIK[MT7]PENLLLDER.3y8_2.heavy 581.668 / 501.267 21316.0 30.89900016784668 39 9 10 10 10 1.4921346684601848 63.01259000048061 0.0 3 0.8018332877686963 2.7252060387474595 21316.0 22.96051692493275 0.0 - - - - - - - 1186.5 42 10 CHEK1 CHK1 checkpoint homolog (S. pombe) 287 37 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9431.[MT7]-VILAGNLLSHSTQSR.3y7_1.heavy 580.668 / 802.38 83746.0 31.14620018005371 47 17 10 10 10 7.319471214931643 13.662189120438244 0.0 3 0.9764384210244073 8.024236949919544 83746.0 50.31668159118784 0.0 - - - - - - - 395.0 167 2 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 289 37 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9431.[MT7]-VILAGNLLSHSTQSR.3b6_1.heavy 580.668 / 712.447 72290.0 31.14620018005371 47 17 10 10 10 7.319471214931643 13.662189120438244 0.0 3 0.9764384210244073 8.024236949919544 72290.0 59.33257701012187 0.0 - - - - - - - 296.5 144 2 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 291 37 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9431.[MT7]-VILAGNLLSHSTQSR.3b5_1.heavy 580.668 / 598.404 29430.0 31.14620018005371 47 17 10 10 10 7.319471214931643 13.662189120438244 0.0 3 0.9764384210244073 8.024236949919544 29430.0 25.673929374186677 0.0 - - - - - - - 770.5 58 10 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 293 37 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9431.[MT7]-VILAGNLLSHSTQSR.3y5_1.heavy 580.668 / 578.289 64192.0 31.14620018005371 47 17 10 10 10 7.319471214931643 13.662189120438244 0.0 3 0.9764384210244073 8.024236949919544 64192.0 43.7419784432289 0.0 - - - - - - - 395.0 128 1 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 295 38 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9228.[MT7]-DFISLLPK[MT7].2b3_1.heavy 610.878 / 520.289 26214.0 37.98124980926514 41 18 10 3 10 2.858880569629341 27.91032528878951 0.07300186157226562 3 0.9803203395704608 8.782916525576335 26214.0 0.0 1.0 - - - - - - - 288.0 52 5 FBXW7 F-box and WD repeat domain containing 7 297 38 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9228.[MT7]-DFISLLPK[MT7].2y5_1.heavy 610.878 / 701.468 28612.0 37.98124980926514 41 18 10 3 10 2.858880569629341 27.91032528878951 0.07300186157226562 3 0.9803203395704608 8.782916525576335 28612.0 48.7739909898616 0.0 - - - - - - - 384.0 57 5 FBXW7 F-box and WD repeat domain containing 7 299 38 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9228.[MT7]-DFISLLPK[MT7].2b4_1.heavy 610.878 / 607.321 16943.0 37.98124980926514 41 18 10 3 10 2.858880569629341 27.91032528878951 0.07300186157226562 3 0.9803203395704608 8.782916525576335 16943.0 14.989785522788203 0.0 - - - - - - - 288.0 33 5 FBXW7 F-box and WD repeat domain containing 7 301 38 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9228.[MT7]-DFISLLPK[MT7].2y3_1.heavy 610.878 / 501.352 16304.0 37.98124980926514 41 18 10 3 10 2.858880569629341 27.91032528878951 0.07300186157226562 3 0.9803203395704608 8.782916525576335 16304.0 0.5914066295973617 1.0 - - - - - - - 753.2857142857143 33 7 FBXW7 F-box and WD repeat domain containing 7 303 39 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 OPPA_ECOLI.LAIAASSLWK.2y7.peptide 530.31 / 762.41 2335460.0 34.25450134277344 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 2335460.0 82.3846657771102 0.0 - - - - - - - 184.0 4670 7 305 39 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 OPPA_ECOLI.LAIAASSLWK.2y8.peptide 530.31 / 875.5 1117610.0 34.25450134277344 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1117610.0 951.8615045060745 0.0 - - - - - - - 257.6 2235 5 307 39 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 OPPA_ECOLI.LAIAASSLWK.2y6.peptide 530.31 / 691.38 1663010.0 34.25450134277344 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1663010.0 97.78472248793409 0.0 - - - - - - - 289.8 3326 5 309 40 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9434.[MT7]-QLLGEHLTAILQK[MT7].3y6_1.heavy 584.692 / 817.526 60760.0 34.18109893798828 47 17 10 10 10 3.1374658610006385 31.872856767310545 0.0 3 0.9720080977783324 7.359153529827286 60760.0 404.90333579536036 0.0 - - - - - - - 300.9230769230769 121 13 CUL4B;CUL4A cullin 4B;cullin 4A 311 40 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9434.[MT7]-QLLGEHLTAILQK[MT7].3y3_1.heavy 584.692 / 532.357 73792.0 34.18109893798828 47 17 10 10 10 3.1374658610006385 31.872856767310545 0.0 3 0.9720080977783324 7.359153529827286 73792.0 83.84020071848092 0.0 - - - - - - - 407.5 147 4 CUL4B;CUL4A cullin 4B;cullin 4A 313 40 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9434.[MT7]-QLLGEHLTAILQK[MT7].3b5_1.heavy 584.692 / 685.4 76398.0 34.18109893798828 47 17 10 10 10 3.1374658610006385 31.872856767310545 0.0 3 0.9720080977783324 7.359153529827286 76398.0 91.08034658003649 0.0 - - - - - - - 264.875 152 8 CUL4B;CUL4A cullin 4B;cullin 4A 315 40 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9434.[MT7]-QLLGEHLTAILQK[MT7].3y4_1.heavy 584.692 / 645.442 40561.0 34.18109893798828 47 17 10 10 10 3.1374658610006385 31.872856767310545 0.0 3 0.9720080977783324 7.359153529827286 40561.0 59.096972176348096 0.0 - - - - - - - 344.1111111111111 81 9 CUL4B;CUL4A cullin 4B;cullin 4A 317 41 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9535.[MT7]-VFVDIEFTGDPHQFEQK[MT7].3b6_1.heavy 775.398 / 847.468 14608.0 35.282325744628906 44 18 10 6 10 6.413574089798143 15.591930271619788 0.032501220703125 3 0.9864726962927822 10.599026092594812 14608.0 56.36237185452098 0.0 - - - - - - - 299.0 29 17 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 319 41 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9535.[MT7]-VFVDIEFTGDPHQFEQK[MT7].3b4_1.heavy 775.398 / 605.341 37472.0 35.282325744628906 44 18 10 6 10 6.413574089798143 15.591930271619788 0.032501220703125 3 0.9864726962927822 10.599026092594812 37472.0 34.31894676588437 0.0 - - - - - - - 816.7142857142857 74 7 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 321 41 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9535.[MT7]-VFVDIEFTGDPHQFEQK[MT7].3y4_1.heavy 775.398 / 695.385 21118.0 35.282325744628906 44 18 10 6 10 6.413574089798143 15.591930271619788 0.032501220703125 3 0.9864726962927822 10.599026092594812 21118.0 9.477007874015747 1.0 - - - - - - - 344.0833333333333 42 12 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 323 41 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9535.[MT7]-VFVDIEFTGDPHQFEQK[MT7].3y5_1.heavy 775.398 / 823.443 15878.0 35.282325744628906 44 18 10 6 10 6.413574089798143 15.591930271619788 0.032501220703125 3 0.9864726962927822 10.599026092594812 15878.0 54.600344877668775 0.0 - - - - - - - 271.0 31 17 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 325 42 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9534.[MT7]-LVDVGEFSEEAQFRDPC[CAM]R.3y15_2.heavy 766.703 / 913.91 28285.0 33.37080001831055 44 14 10 10 10 3.4903740567558654 28.650224409742833 0.0 3 0.9446176668077972 5.219774300312867 28285.0 91.9530797206722 0.0 - - - - - - - 278.5 56 8 POLE polymerase (DNA directed), epsilon 327 42 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9534.[MT7]-LVDVGEFSEEAQFRDPC[CAM]R.3b6_1.heavy 766.703 / 757.421 10971.0 33.37080001831055 44 14 10 10 10 3.4903740567558654 28.650224409742833 0.0 3 0.9446176668077972 5.219774300312867 10971.0 7.245051312335958 0.0 - - - - - - - 171.0 21 1 POLE polymerase (DNA directed), epsilon 329 42 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9534.[MT7]-LVDVGEFSEEAQFRDPC[CAM]R.3b4_1.heavy 766.703 / 571.357 19714.0 33.37080001831055 44 14 10 10 10 3.4903740567558654 28.650224409742833 0.0 3 0.9446176668077972 5.219774300312867 19714.0 30.503907602407686 0.0 - - - - - - - 702.9 39 10 POLE polymerase (DNA directed), epsilon 331 42 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9534.[MT7]-LVDVGEFSEEAQFRDPC[CAM]R.3y4_1.heavy 766.703 / 547.229 3600.0 33.37080001831055 44 14 10 10 10 3.4903740567558654 28.650224409742833 0.0 3 0.9446176668077972 5.219774300312867 3600.0 12.589504373177842 0.0 - - - - - - - 628.5555555555555 7 9 POLE polymerase (DNA directed), epsilon 333 43 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9533.[MT7]-K[MT7]NPQAVLDVLEFYNSK[MT7].4y4_1.heavy 575.077 / 655.353 20966.0 37.83639907836914 39 13 10 6 10 1.8699303174340096 53.47792859855005 0.03620147705078125 3 0.9244249151410477 4.460660683918323 20966.0 84.0428144989339 0.0 - - - - - - - 312.7 41 10 PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 335 43 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9533.[MT7]-K[MT7]NPQAVLDVLEFYNSK[MT7].4b8_2.heavy 575.077 / 577.842 89964.0 37.83639907836914 39 13 10 6 10 1.8699303174340096 53.47792859855005 0.03620147705078125 3 0.9244249151410477 4.460660683918323 89964.0 116.9713273671217 0.0 - - - - - - - 391.0 179 8 PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 337 43 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9533.[MT7]-K[MT7]NPQAVLDVLEFYNSK[MT7].4b2_1.heavy 575.077 / 531.349 3286.0 37.83639907836914 39 13 10 6 10 1.8699303174340096 53.47792859855005 0.03620147705078125 3 0.9244249151410477 4.460660683918323 3286.0 4.116553239001922 3.0 - - - - - - - 684.625 12 8 PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 339 43 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9533.[MT7]-K[MT7]NPQAVLDVLEFYNSK[MT7].4b5_1.heavy 575.077 / 827.498 4537.0 37.83639907836914 39 13 10 6 10 1.8699303174340096 53.47792859855005 0.03620147705078125 3 0.9244249151410477 4.460660683918323 4537.0 7.394038796238039 0.0 - - - - - - - 312.6 9 10 PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 341 44 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9532.[MT7]-K[MT7]NPQAVLDVLEFYNSK[MT7].3b5_1.heavy 766.434 / 827.498 6100.0 37.81829833984375 42 12 10 10 10 1.7233171041966118 49.570427533992174 0.0 3 0.882479849170778 3.564168928227595 6100.0 11.08758713331397 0.0 - - - - - - - 252.3846153846154 12 13 PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 343 44 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9532.[MT7]-K[MT7]NPQAVLDVLEFYNSK[MT7].3y4_1.heavy 766.434 / 655.353 13763.0 37.81829833984375 42 12 10 10 10 1.7233171041966118 49.570427533992174 0.0 3 0.882479849170778 3.564168928227595 13763.0 29.02503800312195 0.0 - - - - - - - 782.0 27 7 PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 345 44 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9532.[MT7]-K[MT7]NPQAVLDVLEFYNSK[MT7].3y5_1.heavy 766.434 / 802.422 17830.0 37.81829833984375 42 12 10 10 10 1.7233171041966118 49.570427533992174 0.0 3 0.882479849170778 3.564168928227595 17830.0 79.75079872204473 0.0 - - - - - - - 298.54545454545456 35 11 PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 347 44 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9532.[MT7]-K[MT7]NPQAVLDVLEFYNSK[MT7].3b8_2.heavy 766.434 / 577.842 59276.0 37.81829833984375 42 12 10 10 10 1.7233171041966118 49.570427533992174 0.0 3 0.882479849170778 3.564168928227595 59276.0 103.97039324734745 0.0 - - - - - - - 695.3333333333334 118 9 PAK1 p21 protein (Cdc42/Rac)-activated kinase 1 349 45 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9531.[MT7]-ILGLC[CAM]LLQNELC[CAM]PITLNR.3y7_1.heavy 762.093 / 873.461 33348.0 45.884650230407715 43 17 10 6 10 5.670427789471221 17.635353753323294 0.037799835205078125 3 0.9778171701701999 8.270805111660287 33348.0 54.229954322723344 0.0 - - - - - - - 303.09090909090907 66 11 UBR5;LOC730429 ubiquitin protein ligase E3 component n-recognin 5;e3 ubiquitin-protein ligase UBR5-like 351 45 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9531.[MT7]-ILGLC[CAM]LLQNELC[CAM]PITLNR.3b6_1.heavy 762.093 / 814.498 31347.0 45.884650230407715 43 17 10 6 10 5.670427789471221 17.635353753323294 0.037799835205078125 3 0.9778171701701999 8.270805111660287 31347.0 160.6409308769201 0.0 - - - - - - - 283.8888888888889 62 9 UBR5;LOC730429 ubiquitin protein ligase E3 component n-recognin 5;e3 ubiquitin-protein ligase UBR5-like 353 45 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9531.[MT7]-ILGLC[CAM]LLQNELC[CAM]PITLNR.3y6_1.heavy 762.093 / 713.43 72810.0 45.884650230407715 43 17 10 6 10 5.670427789471221 17.635353753323294 0.037799835205078125 3 0.9778171701701999 8.270805111660287 72810.0 93.17551416442228 0.0 - - - - - - - 682.8571428571429 145 7 UBR5;LOC730429 ubiquitin protein ligase E3 component n-recognin 5;e3 ubiquitin-protein ligase UBR5-like 355 45 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9531.[MT7]-ILGLC[CAM]LLQNELC[CAM]PITLNR.3b5_1.heavy 762.093 / 701.414 29902.0 45.884650230407715 43 17 10 6 10 5.670427789471221 17.635353753323294 0.037799835205078125 3 0.9778171701701999 8.270805111660287 29902.0 38.424813187287576 0.0 - - - - - - - 301.7142857142857 59 7 UBR5;LOC730429 ubiquitin protein ligase E3 component n-recognin 5;e3 ubiquitin-protein ligase UBR5-like 357 46 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9530.[MT7]-ISADGYEVENLISEDLTK[MT7].2y9_1.heavy 1142.59 / 1176.66 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBOX5 U-box domain containing 5 359 46 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9530.[MT7]-ISADGYEVENLISEDLTK[MT7].2b4_1.heavy 1142.59 / 531.289 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBOX5 U-box domain containing 5 361 46 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9530.[MT7]-ISADGYEVENLISEDLTK[MT7].2y6_1.heavy 1142.59 / 836.448 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBOX5 U-box domain containing 5 363 46 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9530.[MT7]-ISADGYEVENLISEDLTK[MT7].2b7_1.heavy 1142.59 / 880.417 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBOX5 U-box domain containing 5 365 47 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9529.[MT7]-FLPLLMTNHPAPNLFGTPR.4y5_1.heavy 570.817 / 577.309 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 367 47 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9529.[MT7]-FLPLLMTNHPAPNLFGTPR.4b4_1.heavy 570.817 / 615.399 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 369 47 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9529.[MT7]-FLPLLMTNHPAPNLFGTPR.4b5_1.heavy 570.817 / 728.483 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 371 47 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9529.[MT7]-FLPLLMTNHPAPNLFGTPR.4b3_1.heavy 570.817 / 502.315 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 373 48 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A8996.[MT7]-AEDSAR.2b3_1.heavy 396.702 / 460.216 10212.0 12.135100364685059 36 20 0 10 6 7.310123927696276 13.679658647252804 0.0 6 0.9903444507079404 12.549424523006687 10212.0 29.186920720030642 1.0 - - - - - - - 172.45098039215685 26 51 FBXW8 F-box and WD repeat domain containing 8 375 48 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A8996.[MT7]-AEDSAR.2y5_1.heavy 396.702 / 577.258 7379.0 12.135100364685059 36 20 0 10 6 7.310123927696276 13.679658647252804 0.0 6 0.9903444507079404 12.549424523006687 7379.0 9.237422180299152 2.0 - - - - - - - 188.52 124 50 FBXW8 F-box and WD repeat domain containing 8 377 48 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A8996.[MT7]-AEDSAR.2b4_1.heavy 396.702 / 547.248 4696.0 12.135100364685059 36 20 0 10 6 7.310123927696276 13.679658647252804 0.0 6 0.9903444507079404 12.549424523006687 4696.0 3.74139185828352 0.0 - - - - - - - 181.9607843137255 9 51 FBXW8 F-box and WD repeat domain containing 8 379 48 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A8996.[MT7]-AEDSAR.2b5_1.heavy 396.702 / 618.285 2795.0 12.135100364685059 36 20 0 10 6 7.310123927696276 13.679658647252804 0.0 6 0.9903444507079404 12.549424523006687 2795.0 5.005970149253732 4.0 - - - - - - - 211.2037037037037 5 54 FBXW8 F-box and WD repeat domain containing 8 381 49 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9333.[MT7]-SQEITTNSEQR.2y8_1.heavy 718.859 / 948.474 6961.0 16.398500442504883 45 15 10 10 10 2.6450392886869896 30.282497062656407 0.0 3 0.9599105833985533 6.143075235846535 6961.0 66.30697484317967 0.0 - - - - - - - 201.66666666666666 13 3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 383 49 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9333.[MT7]-SQEITTNSEQR.2b4_1.heavy 718.859 / 602.327 9231.0 16.398500442504883 45 15 10 10 10 2.6450392886869896 30.282497062656407 0.0 3 0.9599105833985533 6.143075235846535 9231.0 49.07001024992367 0.0 - - - - - - - 257.2 18 10 CDC6 cell division cycle 6 homolog (S. cerevisiae) 385 49 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9333.[MT7]-SQEITTNSEQR.2y9_1.heavy 718.859 / 1077.52 3935.0 16.398500442504883 45 15 10 10 10 2.6450392886869896 30.282497062656407 0.0 3 0.9599105833985533 6.143075235846535 3935.0 44.30132450331125 0.0 - - - - - - - 151.0 7 2 CDC6 cell division cycle 6 homolog (S. cerevisiae) 387 49 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9333.[MT7]-SQEITTNSEQR.2y7_1.heavy 718.859 / 835.39 9685.0 16.398500442504883 45 15 10 10 10 2.6450392886869896 30.282497062656407 0.0 3 0.9599105833985533 6.143075235846535 9685.0 63.575792079207915 0.0 - - - - - - - 272.4 19 5 CDC6 cell division cycle 6 homolog (S. cerevisiae) 389 50 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9230.[MT7]-GTEQYQSK[MT7].2y4_1.heavy 614.824 / 669.369 12274.0 15.381099700927734 43 13 10 10 10 1.0240289182279407 57.664767161917155 0.0 3 0.9043513486705387 3.9582110816425446 12274.0 34.09444444444445 0.0 - - - - - - - 216.0 24 11 PRIM2 primase, DNA, polypeptide 2 (58kDa) 391 50 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9230.[MT7]-GTEQYQSK[MT7].2b4_1.heavy 614.824 / 560.28 9106.0 15.381099700927734 43 13 10 10 10 1.0240289182279407 57.664767161917155 0.0 3 0.9043513486705387 3.9582110816425446 9106.0 20.104155844155848 0.0 - - - - - - - 678.8571428571429 18 7 PRIM2 primase, DNA, polypeptide 2 (58kDa) 393 50 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9230.[MT7]-GTEQYQSK[MT7].2b6_1.heavy 614.824 / 851.402 5411.0 15.381099700927734 43 13 10 10 10 1.0240289182279407 57.664767161917155 0.0 3 0.9043513486705387 3.9582110816425446 5411.0 36.72921212121212 0.0 - - - - - - - 242.0 10 6 PRIM2 primase, DNA, polypeptide 2 (58kDa) 395 50 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9230.[MT7]-GTEQYQSK[MT7].2b5_1.heavy 614.824 / 723.343 6203.0 15.381099700927734 43 13 10 10 10 1.0240289182279407 57.664767161917155 0.0 3 0.9043513486705387 3.9582110816425446 6203.0 22.243080808080805 0.0 - - - - - - - 231.0 12 8 PRIM2 primase, DNA, polypeptide 2 (58kDa) 397 51 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9525.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].2y5_1.heavy 1116.61 / 716.442 2907.0 41.64720153808594 48 18 10 10 10 2.84592384888267 24.524212521742665 0.0 3 0.9808172386173307 8.89631405089942 2907.0 12.594719008264462 0.0 - - - - - - - 340.6666666666667 5 9 FBXW7 F-box and WD repeat domain containing 7 399 51 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9525.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].2y9_1.heavy 1116.61 / 1207.57 1292.0 41.64720153808594 48 18 10 10 10 2.84592384888267 24.524212521742665 0.0 3 0.9808172386173307 8.89631405089942 1292.0 6.41655972486012 0.0 - - - - - - - 253.42857142857142 2 7 FBXW7 F-box and WD repeat domain containing 7 401 51 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9525.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].2b6_1.heavy 1116.61 / 799.468 2422.0 41.64720153808594 48 18 10 10 10 2.84592384888267 24.524212521742665 0.0 3 0.9808172386173307 8.89631405089942 2422.0 11.847321308386055 1.0 - - - - - - - 322.625 5 8 FBXW7 F-box and WD repeat domain containing 7 403 51 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9525.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].2b5_1.heavy 1116.61 / 670.426 3714.0 41.64720153808594 48 18 10 10 10 2.84592384888267 24.524212521742665 0.0 3 0.9808172386173307 8.89631405089942 3714.0 18.244456016682445 0.0 - - - - - - - 253.42857142857142 7 7 FBXW7 F-box and WD repeat domain containing 7 405 52 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A8992.[MT7]-QLEEENK[MT7].3y3_1.heavy 393.215 / 534.3 N/A N/A - - - - - - - - - 0.0 - - - - - - - MYH3;POLE2 myosin, heavy chain 3, skeletal muscle, embryonic;polymerase (DNA directed), epsilon 2 (p59 subunit) 407 52 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A8992.[MT7]-QLEEENK[MT7].3b4_1.heavy 393.215 / 644.337 N/A N/A - - - - - - - - - 0.0 - - - - - - - MYH3;POLE2 myosin, heavy chain 3, skeletal muscle, embryonic;polymerase (DNA directed), epsilon 2 (p59 subunit) 409 52 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A8992.[MT7]-QLEEENK[MT7].3b3_1.heavy 393.215 / 515.295 N/A N/A - - - - - - - - - 0.0 - - - - - - - MYH3;POLE2 myosin, heavy chain 3, skeletal muscle, embryonic;polymerase (DNA directed), epsilon 2 (p59 subunit) 411 52 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A8992.[MT7]-QLEEENK[MT7].3y2_1.heavy 393.215 / 405.258 N/A N/A - - - - - - - - - 0.0 - - - - - - - MYH3;POLE2 myosin, heavy chain 3, skeletal muscle, embryonic;polymerase (DNA directed), epsilon 2 (p59 subunit) 413 53 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9526.[MT7]-LEVPDRTEDNLQIYLK[MT7].3b9_2.heavy 745.414 / 600.305 37602.0 33.28950119018555 47 17 10 10 10 3.6817610588499323 27.160915225508116 0.0 3 0.9739197855210662 7.625325206041123 37602.0 123.73426861784937 0.0 - - - - - - - 1221.111111111111 75 9 E2F2 E2F transcription factor 2 415 53 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9526.[MT7]-LEVPDRTEDNLQIYLK[MT7].3y3_1.heavy 745.414 / 567.362 52196.0 33.28950119018555 47 17 10 10 10 3.6817610588499323 27.160915225508116 0.0 3 0.9739197855210662 7.625325206041123 52196.0 70.43926213592232 0.0 - - - - - - - 1116.0 104 8 E2F2 E2F transcription factor 2 417 53 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9526.[MT7]-LEVPDRTEDNLQIYLK[MT7].3y4_1.heavy 745.414 / 680.446 27643.0 33.28950119018555 47 17 10 10 10 3.6817610588499323 27.160915225508116 0.0 3 0.9739197855210662 7.625325206041123 27643.0 30.275025854531627 0.0 - - - - - - - 286.0 55 6 E2F2 E2F transcription factor 2 419 53 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9526.[MT7]-LEVPDRTEDNLQIYLK[MT7].3b12_2.heavy 745.414 / 777.898 33996.0 33.28950119018555 47 17 10 10 10 3.6817610588499323 27.160915225508116 0.0 3 0.9739197855210662 7.625325206041123 33996.0 23.577388168444305 1.0 - - - - - - - 662.2857142857143 69 7 E2F2 E2F transcription factor 2 421 54 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9233.[MT7]-GTASPGSQLK[MT7].2y8_1.heavy 617.356 / 931.533 4731.0 18.717100143432617 41 16 10 5 10 5.0802166165835 19.68420001492989 0.04380035400390625 3 0.9659169768597515 6.665796154731818 4731.0 28.791514285714285 0.0 - - - - - - - 238.63636363636363 9 11 AIRE autoimmune regulator 423 54 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9233.[MT7]-GTASPGSQLK[MT7].2y5_1.heavy 617.356 / 676.411 3330.0 18.717100143432617 41 16 10 5 10 5.0802166165835 19.68420001492989 0.04380035400390625 3 0.9659169768597515 6.665796154731818 3330.0 15.222857142857144 0.0 - - - - - - - 218.75 6 8 AIRE autoimmune regulator 425 54 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9233.[MT7]-GTASPGSQLK[MT7].2y6_1.heavy 617.356 / 773.464 39604.0 18.717100143432617 41 16 10 5 10 5.0802166165835 19.68420001492989 0.04380035400390625 3 0.9659169768597515 6.665796154731818 39604.0 237.3027774200122 1.0 - - - - - - - 233.33333333333334 79 6 AIRE autoimmune regulator 427 54 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9233.[MT7]-GTASPGSQLK[MT7].2y7_1.heavy 617.356 / 860.496 11215.0 18.717100143432617 41 16 10 5 10 5.0802166165835 19.68420001492989 0.04380035400390625 3 0.9659169768597515 6.665796154731818 11215.0 71.76228693702873 0.0 - - - - - - - 240.625 22 8 AIRE autoimmune regulator 429 55 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9429.[MT7]-FELGRPLPLHFLR.3b9_2.heavy 580.346 / 584.354 4257.0 35.725826263427734 32 14 2 6 10 2.6905145226778595 37.16761205231123 0.0308990478515625 3 0.933369525377162 4.754276861249277 4257.0 6.210085632730732 1.0 - - - - - - - 225.42857142857142 8 14 CCNB2 cyclin B2 431 55 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9429.[MT7]-FELGRPLPLHFLR.3y6_1.heavy 580.346 / 782.467 8514.0 35.725826263427734 32 14 2 6 10 2.6905145226778595 37.16761205231123 0.0308990478515625 3 0.933369525377162 4.754276861249277 8514.0 54.57407422278882 0.0 - - - - - - - 254.84615384615384 17 13 CCNB2 cyclin B2 433 55 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9429.[MT7]-FELGRPLPLHFLR.3y4_1.heavy 580.346 / 572.33 2996.0 35.725826263427734 32 14 2 6 10 2.6905145226778595 37.16761205231123 0.0308990478515625 3 0.933369525377162 4.754276861249277 2996.0 3.421827411167513 4.0 - - - - - - - 788.2 41 10 CCNB2 cyclin B2 435 55 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9429.[MT7]-FELGRPLPLHFLR.3y8_1.heavy 580.346 / 992.604 7410.0 35.725826263427734 32 14 2 6 10 2.6905145226778595 37.16761205231123 0.0308990478515625 3 0.933369525377162 4.754276861249277 7410.0 36.0540924192087 0.0 - - - - - - - 262.77777777777777 14 9 CCNB2 cyclin B2 437 56 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9231.[MT7]-LISEEDLLR.2y8_1.heavy 616.354 / 974.515 11635.0 33.91780090332031 43 13 10 10 10 1.0973599528227829 53.80361689931141 0.0 3 0.9011393651593012 3.8922982704684475 11635.0 49.661585365853654 0.0 - - - - - - - 262.4 23 10 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 439 56 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9231.[MT7]-LISEEDLLR.2y5_1.heavy 616.354 / 645.357 3441.0 33.91780090332031 43 13 10 10 10 1.0973599528227829 53.80361689931141 0.0 3 0.9011393651593012 3.8922982704684475 3441.0 7.346087760216361 3.0 - - - - - - - 366.5882352941176 6 17 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 441 56 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9231.[MT7]-LISEEDLLR.2b6_1.heavy 616.354 / 831.422 6063.0 33.91780090332031 43 13 10 10 10 1.0973599528227829 53.80361689931141 0.0 3 0.9011393651593012 3.8922982704684475 6063.0 16.272904940587868 0.0 - - - - - - - 372.72727272727275 12 11 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 443 56 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9231.[MT7]-LISEEDLLR.2y7_1.heavy 616.354 / 861.431 17043.0 33.91780090332031 43 13 10 10 10 1.0973599528227829 53.80361689931141 0.0 3 0.9011393651593012 3.8922982704684475 17043.0 28.97685323560689 0.0 - - - - - - - 328.0 34 8 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 445 57 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9218.[MT7]-ASVDGWFK[MT7].2y4_1.heavy 599.329 / 681.384 49964.0 32.208499908447266 47 17 10 10 10 2.7819300209240416 31.019264809220594 0.0 3 0.9746729964646165 7.738371287869896 49964.0 45.53294189602447 0.0 - - - - - - - 363.0 99 2 PRKCB protein kinase C, beta 447 57 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9218.[MT7]-ASVDGWFK[MT7].2y5_1.heavy 599.329 / 796.411 23074.0 32.208499908447266 47 17 10 10 10 2.7819300209240416 31.019264809220594 0.0 3 0.9746729964646165 7.738371287869896 23074.0 44.33511149249776 0.0 - - - - - - - 635.9 46 10 PRKCB protein kinase C, beta 449 57 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9218.[MT7]-ASVDGWFK[MT7].2b4_1.heavy 599.329 / 517.274 52508.0 32.208499908447266 47 17 10 10 10 2.7819300209240416 31.019264809220594 0.0 3 0.9746729964646165 7.738371287869896 52508.0 46.274422174551056 0.0 - - - - - - - 1245.857142857143 105 7 PRKCB protein kinase C, beta 451 57 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9218.[MT7]-ASVDGWFK[MT7].2y7_1.heavy 599.329 / 982.511 20712.0 32.208499908447266 47 17 10 10 10 2.7819300209240416 31.019264809220594 0.0 3 0.9746729964646165 7.738371287869896 20712.0 81.27015812747962 0.0 - - - - - - - 302.6666666666667 41 12 PRKCB protein kinase C, beta 453 58 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9521.[MT7]-AAVATFLQSVQVPEFTPK[MT7].3y6_1.heavy 741.087 / 862.479 87455.0 41.44409942626953 42 12 10 10 10 1.0248087401115797 57.60210505631701 0.0 3 0.8917379412292783 3.716429692210628 87455.0 228.83035903376174 0.0 - - - - - - - 1370.0 174 7 UBA1 ubiquitin-like modifier activating enzyme 1 455 58 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9521.[MT7]-AAVATFLQSVQVPEFTPK[MT7].3b6_1.heavy 741.087 / 705.405 36412.0 41.44409942626953 42 12 10 10 10 1.0248087401115797 57.60210505631701 0.0 3 0.8917379412292783 3.716429692210628 36412.0 63.92998192129573 0.0 - - - - - - - 696.5714285714286 72 7 UBA1 ubiquitin-like modifier activating enzyme 1 457 58 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9521.[MT7]-AAVATFLQSVQVPEFTPK[MT7].3b5_1.heavy 741.087 / 558.337 32999.0 41.44409942626953 42 12 10 10 10 1.0248087401115797 57.60210505631701 0.0 3 0.8917379412292783 3.716429692210628 32999.0 62.49319007308481 0.0 - - - - - - - 284.75 65 8 UBA1 ubiquitin-like modifier activating enzyme 1 459 58 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9521.[MT7]-AAVATFLQSVQVPEFTPK[MT7].3b7_1.heavy 741.087 / 818.489 32349.0 41.44409942626953 42 12 10 10 10 1.0248087401115797 57.60210505631701 0.0 3 0.8917379412292783 3.716429692210628 32349.0 239.28794978763568 0.0 - - - - - - - 203.5 64 4 UBA1 ubiquitin-like modifier activating enzyme 1 461 59 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9524.[MT7]-TFLIPVLFNNYITAALK[MT7].4y5_1.heavy 557.334 / 647.421 1743.0 52.26387405395508 39 13 10 6 10 1.213758400809638 54.925812766524736 0.0364990234375 3 0.9259357242329724 4.506510069954282 1743.0 94.2333091436865 0.0 - - - - - - - 69.36363636363636 3 11 HERC3 hect domain and RLD 3 463 59 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9524.[MT7]-TFLIPVLFNNYITAALK[MT7].4y4_1.heavy 557.334 / 546.373 185.0 52.26387405395508 39 13 10 6 10 1.213758400809638 54.925812766524736 0.0364990234375 3 0.9259357242329724 4.506510069954282 185.0 2.107594936708861 2.0 - - - - - - - 0.0 0 0 HERC3 hect domain and RLD 3 465 59 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9524.[MT7]-TFLIPVLFNNYITAALK[MT7].4b3_1.heavy 557.334 / 506.31 1479.0 52.26387405395508 39 13 10 6 10 1.213758400809638 54.925812766524736 0.0364990234375 3 0.9259357242329724 4.506510069954282 1479.0 45.12945784571292 0.0 - - - - - - - 89.8 2 5 HERC3 hect domain and RLD 3 467 59 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9524.[MT7]-TFLIPVLFNNYITAALK[MT7].4b4_1.heavy 557.334 / 619.394 1611.0 52.26387405395508 39 13 10 6 10 1.213758400809638 54.925812766524736 0.0364990234375 3 0.9259357242329724 4.506510069954282 1611.0 29.865830188679244 1.0 - - - - - - - 74.66666666666667 3 12 HERC3 hect domain and RLD 3 469 60 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9319.[MT7]-LPSGVFSLEFQDFVNK[MT7].3b6_1.heavy 705.717 / 745.437 2971.0 43.330101013183594 46 16 10 10 10 2.680319718727861 29.567321981125957 0.0 3 0.9694188354381172 7.039184244662115 2971.0 2.4326990040323198 1.0 - - - - - - - 217.3846153846154 5 13 MAP2K1 mitogen-activated protein kinase kinase 1 471 60 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9319.[MT7]-LPSGVFSLEFQDFVNK[MT7].3b5_1.heavy 705.717 / 598.368 7724.0 43.330101013183594 46 16 10 10 10 2.680319718727861 29.567321981125957 0.0 3 0.9694188354381172 7.039184244662115 7724.0 0.6074055604039397 1.0 - - - - - - - 297.1666666666667 16 6 MAP2K1 mitogen-activated protein kinase kinase 1 473 60 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9319.[MT7]-LPSGVFSLEFQDFVNK[MT7].3y4_1.heavy 705.717 / 651.395 4159.0 43.330101013183594 46 16 10 10 10 2.680319718727861 29.567321981125957 0.0 3 0.9694188354381172 7.039184244662115 4159.0 0.27997307303938057 2.0 - - - - - - - 214.88888888888889 8 9 MAP2K1 mitogen-activated protein kinase kinase 1 475 60 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9319.[MT7]-LPSGVFSLEFQDFVNK[MT7].3y5_1.heavy 705.717 / 766.422 6239.0 43.330101013183594 46 16 10 10 10 2.680319718727861 29.567321981125957 0.0 3 0.9694188354381172 7.039184244662115 6239.0 20.866437686258152 0.0 - - - - - - - 233.71428571428572 12 7 MAP2K1 mitogen-activated protein kinase kinase 1 477 61 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9520.[MT7]-AAVATFLQSVQVPEFTPK[MT7].4b5_1.heavy 556.067 / 558.337 2603.0 41.43394947052002 39 17 10 2 10 3.0205467982482217 26.670650540671684 0.080902099609375 3 0.9733402292412312 7.541618585682563 2603.0 3.0004098360655735 1.0 - - - - - - - 305.0625 5 16 UBA1 ubiquitin-like modifier activating enzyme 1 479 61 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9520.[MT7]-AAVATFLQSVQVPEFTPK[MT7].4b7_1.heavy 556.067 / 818.489 1139.0 41.43394947052002 39 17 10 2 10 3.0205467982482217 26.670650540671684 0.080902099609375 3 0.9733402292412312 7.541618585682563 1139.0 1.409646697388633 1.0 - - - - - - - 260.2 2 5 UBA1 ubiquitin-like modifier activating enzyme 1 481 61 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9520.[MT7]-AAVATFLQSVQVPEFTPK[MT7].4y6_1.heavy 556.067 / 862.479 2603.0 41.43394947052002 39 17 10 2 10 3.0205467982482217 26.670650540671684 0.080902099609375 3 0.9733402292412312 7.541618585682563 2603.0 12.32896343001261 0.0 - - - - - - - 289.3333333333333 5 9 UBA1 ubiquitin-like modifier activating enzyme 1 483 61 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9520.[MT7]-AAVATFLQSVQVPEFTPK[MT7].4b6_1.heavy 556.067 / 705.405 3254.0 41.43394947052002 39 17 10 2 10 3.0205467982482217 26.670650540671684 0.080902099609375 3 0.9733402292412312 7.541618585682563 3254.0 24.101461329578598 0.0 - - - - - - - 255.71428571428572 6 7 UBA1 ubiquitin-like modifier activating enzyme 1 485 62 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9518.[MT7]-RPTVSSDLENIDTGVNSK[MT7].4b8_1.heavy 555.798 / 1000.55 2942.0 26.61400032043457 33 3 10 10 10 0.5911336941769793 87.98248301648931 0.0 3 0.570575481774941 1.8112780693441106 2942.0 13.850487018695421 0.0 - - - - - - - 339.5 5 4 CCNB2 cyclin B2 487 62 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9518.[MT7]-RPTVSSDLENIDTGVNSK[MT7].4b7_1.heavy 555.798 / 887.47 7243.0 26.61400032043457 33 3 10 10 10 0.5911336941769793 87.98248301648931 0.0 3 0.570575481774941 1.8112780693441106 7243.0 33.6463862134581 0.0 - - - - - - - 258.42857142857144 14 7 CCNB2 cyclin B2 489 62 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9518.[MT7]-RPTVSSDLENIDTGVNSK[MT7].4b9_1.heavy 555.798 / 1129.6 453.0 26.61400032043457 33 3 10 10 10 0.5911336941769793 87.98248301648931 0.0 3 0.570575481774941 1.8112780693441106 453.0 1.804424778761062 3.0 - - - - - - - 0.0 0 0 CCNB2 cyclin B2 491 62 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9518.[MT7]-RPTVSSDLENIDTGVNSK[MT7].4b10_2.heavy 555.798 / 622.324 30328.0 26.61400032043457 33 3 10 10 10 0.5911336941769793 87.98248301648931 0.0 3 0.570575481774941 1.8112780693441106 30328.0 35.697864881321 0.0 - - - - - - - 339.5 60 2 CCNB2 cyclin B2 493 63 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9519.[MT7]-LSATVPNTIVVNWSSEFGR.3b4_1.heavy 741.063 / 517.31 13465.0 40.72019958496094 46 18 10 10 8 5.850192945943622 17.09345331410608 0.0 4 0.9835559771480877 9.610841224670951 13465.0 30.919893332001344 1.0 - - - - - - - 263.0 28 12 PIAS3 protein inhibitor of activated STAT, 3 495 63 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9519.[MT7]-LSATVPNTIVVNWSSEFGR.3b5_1.heavy 741.063 / 616.379 32581.0 40.72019958496094 46 18 10 10 8 5.850192945943622 17.09345331410608 0.0 4 0.9835559771480877 9.610841224670951 32581.0 78.36524500264066 0.0 - - - - - - - 831.0 65 8 PIAS3 protein inhibitor of activated STAT, 3 497 63 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9519.[MT7]-LSATVPNTIVVNWSSEFGR.3y10_1.heavy 741.063 / 1180.57 10805.0 40.72019958496094 46 18 10 10 8 5.850192945943622 17.09345331410608 0.0 4 0.9835559771480877 9.610841224670951 10805.0 33.57304802143396 0.0 - - - - - - - 281.15384615384613 21 13 PIAS3 protein inhibitor of activated STAT, 3 499 63 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9519.[MT7]-LSATVPNTIVVNWSSEFGR.3y9_1.heavy 741.063 / 1081.51 10805.0 40.72019958496094 46 18 10 10 8 5.850192945943622 17.09345331410608 0.0 4 0.9835559771480877 9.610841224670951 10805.0 34.1139637759273 0.0 - - - - - - - 374.0 21 4 PIAS3 protein inhibitor of activated STAT, 3 501 64 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9326.[MT7]-VWDLQAALDPR.2b3_1.heavy 714.392 / 545.284 24240.0 37.97197437286377 46 20 10 6 10 16.337060019785408 6.121052372880584 0.036701202392578125 3 0.9928982069865004 14.635953021801784 24240.0 36.663949843260184 0.0 - - - - - - - 318.6666666666667 48 6 FBXW11 F-box and WD repeat domain containing 11 503 64 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9326.[MT7]-VWDLQAALDPR.2b4_1.heavy 714.392 / 658.368 13077.0 37.97197437286377 46 20 10 6 10 16.337060019785408 6.121052372880584 0.036701202392578125 3 0.9928982069865004 14.635953021801784 13077.0 18.986560475899203 0.0 - - - - - - - 829.3 26 10 FBXW11 F-box and WD repeat domain containing 11 505 64 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9326.[MT7]-VWDLQAALDPR.2b6_1.heavy 714.392 / 857.464 9728.0 37.97197437286377 46 20 10 6 10 16.337060019785408 6.121052372880584 0.036701202392578125 3 0.9928982069865004 14.635953021801784 9728.0 10.292163009404389 0.0 - - - - - - - 295.85714285714283 19 7 FBXW11 F-box and WD repeat domain containing 11 507 64 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9326.[MT7]-VWDLQAALDPR.2b5_1.heavy 714.392 / 786.427 10685.0 37.97197437286377 46 20 10 6 10 16.337060019785408 6.121052372880584 0.036701202392578125 3 0.9928982069865004 14.635953021801784 10685.0 9.742059666386252 0.0 - - - - - - - 265.55555555555554 21 9 FBXW11 F-box and WD repeat domain containing 11 509 65 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9514.[MT7]-SVLNSITEEVLDHMGTFR.3y8_1.heavy 731.376 / 976.467 2799.0 46.84280014038086 47 17 10 10 10 7.092036310626534 14.100322618224958 0.0 3 0.9779736538974149 8.300241745437633 2799.0 43.86894230769231 0.0 - - - - - - - 161.33333333333334 5 9 ORC2 origin recognition complex, subunit 2 511 65 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9514.[MT7]-SVLNSITEEVLDHMGTFR.3y6_1.heavy 731.376 / 748.356 2281.0 46.84280014038086 47 17 10 10 10 7.092036310626534 14.100322618224958 0.0 3 0.9779736538974149 8.300241745437633 2281.0 28.11093041620215 0.0 - - - - - - - 197.0 4 10 ORC2 origin recognition complex, subunit 2 513 65 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9514.[MT7]-SVLNSITEEVLDHMGTFR.3b4_1.heavy 731.376 / 558.337 2799.0 46.84280014038086 47 17 10 10 10 7.092036310626534 14.100322618224958 0.0 3 0.9779736538974149 8.300241745437633 2799.0 14.399999999999999 0.0 - - - - - - - 201.66666666666666 5 18 ORC2 origin recognition complex, subunit 2 515 65 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9514.[MT7]-SVLNSITEEVLDHMGTFR.3b5_1.heavy 731.376 / 645.369 2592.0 46.84280014038086 47 17 10 10 10 7.092036310626534 14.100322618224958 0.0 3 0.9779736538974149 8.300241745437633 2592.0 7.417620578778135 0.0 - - - - - - - 207.5 5 16 ORC2 origin recognition complex, subunit 2 517 66 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9515.[MT7]-MDLADLLTQNPELFRK[MT7].3b6_1.heavy 731.404 / 803.409 11648.0 40.90610122680664 50 20 10 10 10 8.70983965228497 11.481267622850629 0.0 3 0.997325549718101 23.858781851786304 11648.0 55.05579134244465 0.0 - - - - - - - 286.5 23 18 UBE2L6 ubiquitin-conjugating enzyme E2L 6 519 66 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9515.[MT7]-MDLADLLTQNPELFRK[MT7].3y6_1.heavy 731.404 / 933.564 12480.0 40.90610122680664 50 20 10 10 10 8.70983965228497 11.481267622850629 0.0 3 0.997325549718101 23.858781851786304 12480.0 135.32530120481928 0.0 - - - - - - - 203.11111111111111 24 9 UBE2L6 ubiquitin-conjugating enzyme E2L 6 521 66 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9515.[MT7]-MDLADLLTQNPELFRK[MT7].3b5_1.heavy 731.404 / 690.325 29285.0 40.90610122680664 50 20 10 10 10 8.70983965228497 11.481267622850629 0.0 3 0.997325549718101 23.858781851786304 29285.0 90.48612604593913 0.0 - - - - - - - 302.3636363636364 58 11 UBE2L6 ubiquitin-conjugating enzyme E2L 6 523 66 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9515.[MT7]-MDLADLLTQNPELFRK[MT7].3b7_1.heavy 731.404 / 916.493 6989.0 40.90610122680664 50 20 10 10 10 8.70983965228497 11.481267622850629 0.0 3 0.997325549718101 23.858781851786304 6989.0 24.451006006006004 0.0 - - - - - - - 225.64285714285714 13 14 UBE2L6 ubiquitin-conjugating enzyme E2L 6 525 67 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9516.[MT7]-TTGNVYAYEAVEQLNIK[MT7].3b6_1.heavy 734.395 / 780.401 23686.0 35.075273513793945 40 14 10 6 10 1.7495530944298923 39.347536926680704 0.03170013427734375 3 0.9322777413254779 4.715358219440546 23686.0 54.533131176999106 0.0 - - - - - - - 357.75 47 12 PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 527 67 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9516.[MT7]-TTGNVYAYEAVEQLNIK[MT7].3b5_1.heavy 734.395 / 617.338 33064.0 35.075273513793945 40 14 10 6 10 1.7495530944298923 39.347536926680704 0.03170013427734375 3 0.9322777413254779 4.715358219440546 33064.0 47.31161996057744 0.0 - - - - - - - 724.3333333333334 66 9 PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 529 67 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9516.[MT7]-TTGNVYAYEAVEQLNIK[MT7].3y4_1.heavy 734.395 / 631.426 23527.0 35.075273513793945 40 14 10 6 10 1.7495530944298923 39.347536926680704 0.03170013427734375 3 0.9322777413254779 4.715358219440546 23527.0 32.18316037735849 0.0 - - - - - - - 772.2857142857143 47 7 PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 531 67 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9516.[MT7]-TTGNVYAYEAVEQLNIK[MT7].3b7_1.heavy 734.395 / 851.438 40854.0 35.075273513793945 40 14 10 6 10 1.7495530944298923 39.347536926680704 0.03170013427734375 3 0.9322777413254779 4.715358219440546 40854.0 124.14648427672955 0.0 - - - - - - - 715.5 81 8 PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 533 68 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9517.[MT7]-RAQLILQYIPHVIPHK[MT7].4b4_1.heavy 554.342 / 613.39 11429.0 33.97504997253418 37 11 10 6 10 1.997146612752828 46.31804876935805 0.038097381591796875 3 0.8735282797355842 3.433037163126122 11429.0 24.312134424906926 0.0 - - - - - - - 331.22222222222223 22 9 UBE3B ubiquitin protein ligase E3B 535 68 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9517.[MT7]-RAQLILQYIPHVIPHK[MT7].4b5_1.heavy 554.342 / 726.474 8944.0 33.97504997253418 37 11 10 6 10 1.997146612752828 46.31804876935805 0.038097381591796875 3 0.8735282797355842 3.433037163126122 8944.0 51.2050755287009 0.0 - - - - - - - 319.5 17 14 UBE3B ubiquitin protein ligase E3B 537 68 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9517.[MT7]-RAQLILQYIPHVIPHK[MT7].4y3_1.heavy 554.342 / 525.326 48532.0 33.97504997253418 37 11 10 6 10 1.997146612752828 46.31804876935805 0.038097381591796875 3 0.8735282797355842 3.433037163126122 48532.0 49.22651721925757 0.0 - - - - - - - 828.2857142857143 97 7 UBE3B ubiquitin protein ligase E3B 539 68 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9517.[MT7]-RAQLILQYIPHVIPHK[MT7].4b3_1.heavy 554.342 / 500.306 3810.0 33.97504997253418 37 11 10 6 10 1.997146612752828 46.31804876935805 0.038097381591796875 3 0.8735282797355842 3.433037163126122 3810.0 7.551885588895692 2.0 - - - - - - - 865.1111111111111 19 9 UBE3B ubiquitin protein ligase E3B 541 69 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9220.[MT7]-ALSIFNELR.2y8_1.heavy 603.852 / 991.557 12142.0 38.822200775146484 45 15 10 10 10 1.5630790456432146 43.46022769780565 0.0 3 0.9517476388659819 5.595528559670224 12142.0 86.99298780487804 0.0 - - - - - - - 273.3333333333333 24 6 CDC23 cell division cycle 23 homolog (S. cerevisiae) 543 69 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9220.[MT7]-ALSIFNELR.2y5_1.heavy 603.852 / 678.357 14603.0 38.822200775146484 45 15 10 10 10 1.5630790456432146 43.46022769780565 0.0 3 0.9517476388659819 5.595528559670224 14603.0 47.19262195121951 0.0 - - - - - - - 292.85714285714283 29 14 CDC23 cell division cycle 23 homolog (S. cerevisiae) 545 69 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9220.[MT7]-ALSIFNELR.2y6_1.heavy 603.852 / 791.441 6891.0 38.822200775146484 45 15 10 10 10 1.5630790456432146 43.46022769780565 0.0 3 0.9517476388659819 5.595528559670224 6891.0 17.619670731707316 1.0 - - - - - - - 300.6666666666667 17 12 CDC23 cell division cycle 23 homolog (S. cerevisiae) 547 69 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9220.[MT7]-ALSIFNELR.2y7_1.heavy 603.852 / 878.473 12470.0 38.822200775146484 45 15 10 10 10 1.5630790456432146 43.46022769780565 0.0 3 0.9517476388659819 5.595528559670224 12470.0 81.73932926829269 0.0 - - - - - - - 269.42857142857144 24 14 CDC23 cell division cycle 23 homolog (S. cerevisiae) 549 70 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9415.[MT7]-VVPIASLTPYQSK[MT7].3b6_1.heavy 564.338 / 711.452 22960.0 32.653751373291016 43 17 10 6 10 4.180067552015848 23.923058361048433 0.03929901123046875 3 0.975983098577094 7.9475053445734725 22960.0 58.43678160919539 0.0 - - - - - - - 253.0909090909091 45 11 RPA1 replication protein A1, 70kDa 551 70 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9415.[MT7]-VVPIASLTPYQSK[MT7].3b4_1.heavy 564.338 / 553.383 23134.0 32.653751373291016 43 17 10 6 10 4.180067552015848 23.923058361048433 0.03929901123046875 3 0.975983098577094 7.9475053445734725 23134.0 51.40888888888889 0.0 - - - - - - - 661.2 46 10 RPA1 replication protein A1, 70kDa 553 70 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9415.[MT7]-VVPIASLTPYQSK[MT7].3y4_1.heavy 564.338 / 669.369 28004.0 32.653751373291016 43 17 10 6 10 4.180067552015848 23.923058361048433 0.03929901123046875 3 0.975983098577094 7.9475053445734725 28004.0 73.22885057471264 0.0 - - - - - - - 609.0 56 8 RPA1 replication protein A1, 70kDa 555 70 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9415.[MT7]-VVPIASLTPYQSK[MT7].3y5_1.heavy 564.338 / 766.422 82622.0 32.653751373291016 43 17 10 6 10 4.180067552015848 23.923058361048433 0.03929901123046875 3 0.975983098577094 7.9475053445734725 82622.0 186.3268551724138 0.0 - - - - - - - 696.0 165 9 RPA1 replication protein A1, 70kDa 557 71 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 EFTU1_ECO24.FESEVYILSK.2y8.peptide 607.82 / 938.52 3662260.0 31.54599952697754 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 3662260.0 110.3051647055481 0.0 - - - - - - - 28561.0 7324 1 559 71 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 EFTU1_ECO24.FESEVYILSK.2y6.peptide 607.82 / 722.44 1024050.0 31.54599952697754 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1024050.0 105.08986045261133 0.0 - - - - - - - 8378.0 2048 2 561 71 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 EFTU1_ECO24.FESEVYILSK.2y5.peptide 607.82 / 623.38 1417180.0 31.54599952697754 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1417180.0 85.9631410217226 0.0 - - - - - - - 10472.0 2834 1 563 72 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9224.[MT7]-ELIGDYSK[MT7].2y5_1.heavy 606.839 / 713.359 64386.0 25.991500854492188 50 20 10 10 10 10.855096980852807 9.212262237397692 0.0 3 0.9963447683949824 20.40668889846636 64386.0 66.9958744252418 1.0 - - - - - - - 836.4285714285714 145 7 CDC25B cell division cycle 25 homolog B (S. pombe) 565 72 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9224.[MT7]-ELIGDYSK[MT7].2y3_1.heavy 606.839 / 541.31 51329.0 25.991500854492188 50 20 10 10 10 10.855096980852807 9.212262237397692 0.0 3 0.9963447683949824 20.40668889846636 51329.0 78.63166495860914 0.0 - - - - - - - 788.0 102 12 CDC25B cell division cycle 25 homolog B (S. pombe) 567 72 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9224.[MT7]-ELIGDYSK[MT7].2y6_1.heavy 606.839 / 826.443 28366.0 25.991500854492188 50 20 10 10 10 10.855096980852807 9.212262237397692 0.0 3 0.9963447683949824 20.40668889846636 28366.0 84.43965973609569 0.0 - - - - - - - 363.46153846153845 56 13 CDC25B cell division cycle 25 homolog B (S. pombe) 569 72 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9224.[MT7]-ELIGDYSK[MT7].2y7_1.heavy 606.839 / 939.527 36245.0 25.991500854492188 50 20 10 10 10 10.855096980852807 9.212262237397692 0.0 3 0.9963447683949824 20.40668889846636 36245.0 107.3925925925926 0.0 - - - - - - - 350.0 72 9 CDC25B cell division cycle 25 homolog B (S. pombe) 571 73 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9414.[MT7]-LTDFNFLMVLGK[MT7].3b6_1.heavy 562.656 / 882.448 25434.0 46.766998291015625 47 17 10 10 10 3.6738581297500508 27.219341756891264 0.0 3 0.9721149294652754 7.3733033596116275 25434.0 257.48352808988767 0.0 - - - - - - - 240.2 50 10 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 573 73 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9414.[MT7]-LTDFNFLMVLGK[MT7].3b4_1.heavy 562.656 / 621.336 8211.0 46.766998291015625 47 17 10 10 10 3.6738581297500508 27.219341756891264 0.0 3 0.9721149294652754 7.3733033596116275 8211.0 87.84598673323822 0.0 - - - - - - - 200.0 16 9 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 575 73 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9414.[MT7]-LTDFNFLMVLGK[MT7].3b5_1.heavy 562.656 / 735.379 37951.0 46.766998291015625 47 17 10 10 10 3.6738581297500508 27.219341756891264 0.0 3 0.9721149294652754 7.3733033596116275 37951.0 223.2348583240843 0.0 - - - - - - - 180.0 75 10 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 577 73 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9414.[MT7]-LTDFNFLMVLGK[MT7].3y4_1.heavy 562.656 / 560.389 20528.0 46.766998291015625 47 17 10 10 10 3.6738581297500508 27.219341756891264 0.0 3 0.9721149294652754 7.3733033596116275 20528.0 51.157276074553884 0.0 - - - - - - - 729.5714285714286 41 7 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 579 74 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9412.[MT7]-RTAIEAFNETIK[MT7].3b6_1.heavy 560.989 / 786.459 116718.0 29.02079963684082 42 12 10 10 10 1.118794952793702 60.797071089909096 0.0 3 0.8809363535076288 3.540515103657584 116718.0 168.130553449583 0.0 - - - - - - - 366.6666666666667 233 6 PIK3R1;PIK3R2;PIK3R3 phosphoinositide-3-kinase, regulatory subunit 1 (alpha);phosphoinositide-3-kinase, regulatory subunit 2 (beta);phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 581 74 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9412.[MT7]-RTAIEAFNETIK[MT7].3y3_1.heavy 560.989 / 505.347 134962.0 29.02079963684082 42 12 10 10 10 1.118794952793702 60.797071089909096 0.0 3 0.8809363535076288 3.540515103657584 134962.0 135.93195952985826 0.0 - - - - - - - 330.0 269 2 PIK3R1;PIK3R2;PIK3R3 phosphoinositide-3-kinase, regulatory subunit 1 (alpha);phosphoinositide-3-kinase, regulatory subunit 2 (beta);phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 583 74 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9412.[MT7]-RTAIEAFNETIK[MT7].3b4_1.heavy 560.989 / 586.379 28575.0 29.02079963684082 42 12 10 10 10 1.118794952793702 60.797071089909096 0.0 3 0.8809363535076288 3.540515103657584 28575.0 44.28512825430245 0.0 - - - - - - - 264.0 57 5 PIK3R1;PIK3R2;PIK3R3 phosphoinositide-3-kinase, regulatory subunit 1 (alpha);phosphoinositide-3-kinase, regulatory subunit 2 (beta);phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 585 74 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9412.[MT7]-RTAIEAFNETIK[MT7].3b5_1.heavy 560.989 / 715.422 82208.0 29.02079963684082 42 12 10 10 10 1.118794952793702 60.797071089909096 0.0 3 0.8809363535076288 3.540515103657584 82208.0 88.097082708888 0.0 - - - - - - - 366.6666666666667 164 6 PIK3R1;PIK3R2;PIK3R3 phosphoinositide-3-kinase, regulatory subunit 1 (alpha);phosphoinositide-3-kinase, regulatory subunit 2 (beta);phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 587 75 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9411.[MT7]-LVLNTAVPDRLPAR.3b4_1.heavy 560.341 / 584.389 24837.0 30.04330062866211 45 15 10 10 10 1.2301977007722904 52.98548037390022 0.0 3 0.9529272949823329 5.665774402951707 24837.0 24.364916146800475 0.0 - - - - - - - 278.3333333333333 49 6 CDC6 cell division cycle 6 homolog (S. cerevisiae) 589 75 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9411.[MT7]-LVLNTAVPDRLPAR.3b5_1.heavy 560.341 / 685.437 23793.0 30.04330062866211 45 15 10 10 10 1.2301977007722904 52.98548037390022 0.0 3 0.9529272949823329 5.665774402951707 23793.0 25.211964856230033 0.0 - - - - - - - 375.4 47 5 CDC6 cell division cycle 6 homolog (S. cerevisiae) 591 75 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9411.[MT7]-LVLNTAVPDRLPAR.3y12_2.heavy 560.341 / 661.881 76598.0 30.04330062866211 45 15 10 10 10 1.2301977007722904 52.98548037390022 0.0 3 0.9529272949823329 5.665774402951707 76598.0 71.55965555807408 0.0 - - - - - - - 292.2 153 5 CDC6 cell division cycle 6 homolog (S. cerevisiae) 593 75 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9411.[MT7]-LVLNTAVPDRLPAR.3y13_2.heavy 560.341 / 711.415 99348.0 30.04330062866211 45 15 10 10 10 1.2301977007722904 52.98548037390022 0.0 3 0.9529272949823329 5.665774402951707 99348.0 40.023136439481455 0.0 - - - - - - - 313.0 198 2 CDC6 cell division cycle 6 homolog (S. cerevisiae) 595 76 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9209.[MT7]-YAGLTFPK[MT7].2y4_1.heavy 592.849 / 636.384 23995.0 30.98200035095215 47 17 10 10 10 3.1173391768462606 32.07863961122372 0.0 3 0.9724559683062968 7.419022546302638 23995.0 13.631408591927158 0.0 - - - - - - - 254.85714285714286 47 7 MAPK10 mitogen-activated protein kinase 10 597 76 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9209.[MT7]-YAGLTFPK[MT7].2b4_1.heavy 592.849 / 549.315 28159.0 30.98200035095215 47 17 10 10 10 3.1173391768462606 32.07863961122372 0.0 3 0.9724559683062968 7.419022546302638 28159.0 23.74159712911113 1.0 - - - - - - - 397.0 56 4 MAPK10 mitogen-activated protein kinase 10 599 76 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9209.[MT7]-YAGLTFPK[MT7].2y3_1.heavy 592.849 / 535.336 21615.0 30.98200035095215 47 17 10 10 10 3.1173391768462606 32.07863961122372 0.0 3 0.9724559683062968 7.419022546302638 21615.0 20.244531163903716 0.0 - - - - - - - 833.1 43 10 MAPK10 mitogen-activated protein kinase 10 601 76 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9209.[MT7]-YAGLTFPK[MT7].2y7_1.heavy 592.849 / 877.526 24788.0 30.98200035095215 47 17 10 10 10 3.1173391768462606 32.07863961122372 0.0 3 0.9724559683062968 7.419022546302638 24788.0 46.477500000000006 1.0 - - - - - - - 768.625 49 8 MAPK10 mitogen-activated protein kinase 10 603 77 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9208.[MT7]-LFPNADSK[MT7].2y4_1.heavy 590.334 / 564.311 11117.0 26.571399688720703 48 18 10 10 10 2.6102925376097654 38.30988234428682 0.0 3 0.9830258463725521 9.459149069583857 11117.0 9.026561225597465 1.0 - - - - - - - 832.3333333333334 22 3 MAPK1 mitogen-activated protein kinase 1 605 77 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9208.[MT7]-LFPNADSK[MT7].2y5_1.heavy 590.334 / 678.354 13840.0 26.571399688720703 48 18 10 10 10 2.6102925376097654 38.30988234428682 0.0 3 0.9830258463725521 9.459149069583857 13840.0 30.331889766838373 0.0 - - - - - - - 709.375 27 8 MAPK1 mitogen-activated protein kinase 1 607 77 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9208.[MT7]-LFPNADSK[MT7].2y6_1.heavy 590.334 / 775.407 151557.0 26.571399688720703 48 18 10 10 10 2.6102925376097654 38.30988234428682 0.0 3 0.9830258463725521 9.459149069583857 151557.0 350.32011465654176 0.0 - - - - - - - 317.8 303 5 MAPK1 mitogen-activated protein kinase 1 609 77 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9208.[MT7]-LFPNADSK[MT7].2y7_1.heavy 590.334 / 922.475 62166.0 26.571399688720703 48 18 10 10 10 2.6102925376097654 38.30988234428682 0.0 3 0.9830258463725521 9.459149069583857 62166.0 146.9787237773834 0.0 - - - - - - - 454.0 124 1 MAPK1 mitogen-activated protein kinase 1 611 78 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9206.[MT7]-EQTVIAVK[MT7].2b3_1.heavy 588.366 / 503.258 27810.0 23.722200393676758 43 13 10 10 10 2.007632065503776 41.937730965990816 0.0 3 0.9187774881831374 4.3007068660353145 27810.0 45.59845898674773 0.0 - - - - - - - 796.0 55 8 E2F2 E2F transcription factor 2 613 78 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9206.[MT7]-EQTVIAVK[MT7].2y4_1.heavy 588.366 / 574.404 84917.0 23.722200393676758 43 13 10 10 10 2.007632065503776 41.937730965990816 0.0 3 0.9187774881831374 4.3007068660353145 84917.0 101.00470959555918 0.0 - - - - - - - 1212.857142857143 169 7 E2F2 E2F transcription factor 2 615 78 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9206.[MT7]-EQTVIAVK[MT7].2y5_1.heavy 588.366 / 673.473 28447.0 23.722200393676758 43 13 10 10 10 2.007632065503776 41.937730965990816 0.0 3 0.9187774881831374 4.3007068660353145 28447.0 30.516143380429096 0.0 - - - - - - - 306.6666666666667 56 9 E2F2 E2F transcription factor 2 617 78 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9206.[MT7]-EQTVIAVK[MT7].2b6_1.heavy 588.366 / 786.448 33118.0 23.722200393676758 43 13 10 10 10 2.007632065503776 41.937730965990816 0.0 3 0.9187774881831374 4.3007068660353145 33118.0 33.53686381278449 0.0 - - - - - - - 333.7142857142857 66 7 E2F2 E2F transcription factor 2 619 79 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9553.[MT7]-IEGLLC[CAM]DVTLVPGDGDEIFPVHR.3b4_1.heavy 899.134 / 557.341 22670.0 42.108699798583984 43 13 10 10 10 1.3777141221666063 51.26396723866313 0.0 3 0.927734277267245 4.562947305995053 22670.0 29.597100586825356 0.0 - - - - - - - 272.14285714285717 45 7 KLHL9 kelch-like 9 (Drosophila) 621 79 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9553.[MT7]-IEGLLC[CAM]DVTLVPGDGDEIFPVHR.3b5_1.heavy 899.134 / 670.426 34560.0 42.108699798583984 43 13 10 10 10 1.3777141221666063 51.26396723866313 0.0 3 0.927734277267245 4.562947305995053 34560.0 13.235421883166945 1.0 - - - - - - - 1223.0 77 7 KLHL9 kelch-like 9 (Drosophila) 623 79 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9553.[MT7]-IEGLLC[CAM]DVTLVPGDGDEIFPVHR.3b7_1.heavy 899.134 / 945.483 24889.0 42.108699798583984 43 13 10 10 10 1.3777141221666063 51.26396723866313 0.0 3 0.927734277267245 4.562947305995053 24889.0 24.153832341443096 0.0 - - - - - - - 238.125 49 8 KLHL9 kelch-like 9 (Drosophila) 625 79 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9553.[MT7]-IEGLLC[CAM]DVTLVPGDGDEIFPVHR.3y9_1.heavy 899.134 / 1069.54 8878.0 42.108699798583984 43 13 10 10 10 1.3777141221666063 51.26396723866313 0.0 3 0.927734277267245 4.562947305995053 8878.0 18.932264984227132 0.0 - - - - - - - 317.2857142857143 17 7 KLHL9 kelch-like 9 (Drosophila) 627 80 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9552.[MT7]-IEGLLC[CAM]DVTLVPGDGDEIFPVHR.4y4_1.heavy 674.602 / 508.299 9661.0 42.108699798583984 43 13 10 10 10 1.0755658141753293 57.00445401892521 0.0 3 0.9099264289670975 4.080830900956767 9661.0 30.461102523659306 0.0 - - - - - - - 316.75 19 8 KLHL9 kelch-like 9 (Drosophila) 629 80 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9552.[MT7]-IEGLLC[CAM]DVTLVPGDGDEIFPVHR.4b7_1.heavy 674.602 / 945.483 6810.0 42.108699798583984 43 13 10 10 10 1.0755658141753293 57.00445401892521 0.0 3 0.9099264289670975 4.080830900956767 6810.0 20.062533621119044 0.0 - - - - - - - 328.9230769230769 13 13 KLHL9 kelch-like 9 (Drosophila) 631 80 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9552.[MT7]-IEGLLC[CAM]DVTLVPGDGDEIFPVHR.4b4_1.heavy 674.602 / 557.341 11562.0 42.108699798583984 43 13 10 10 10 1.0755658141753293 57.00445401892521 0.0 3 0.9099264289670975 4.080830900956767 11562.0 9.56051963775253 1.0 - - - - - - - 300.8 26 10 KLHL9 kelch-like 9 (Drosophila) 633 80 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9552.[MT7]-IEGLLC[CAM]DVTLVPGDGDEIFPVHR.4b5_1.heavy 674.602 / 670.426 14571.0 42.108699798583984 43 13 10 10 10 1.0755658141753293 57.00445401892521 0.0 3 0.9099264289670975 4.080830900956767 14571.0 38.805856036707766 0.0 - - - - - - - 720.1818181818181 29 11 KLHL9 kelch-like 9 (Drosophila) 635 81 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9550.[MT7]-RIIPAVASTNAVIAAVC[CAM]ATEVFK[MT7].3b11_2.heavy 897.182 / 619.87 31797.0 42.602901458740234 37 7 10 10 10 1.1687747339734305 85.55968664725881 0.0 3 0.7395124351146787 2.3635018070590097 31797.0 25.095975621273762 1.0 - - - - - - - 365.6666666666667 63 3 UBA3 ubiquitin-like modifier activating enzyme 3 637 81 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9550.[MT7]-RIIPAVASTNAVIAAVC[CAM]ATEVFK[MT7].3b5_1.heavy 897.182 / 695.469 1723.0 42.602901458740234 37 7 10 10 10 1.1687747339734305 85.55968664725881 0.0 3 0.7395124351146787 2.3635018070590097 1723.0 2.398762940191088 3.0 - - - - - - - 246.28571428571428 5 7 UBA3 ubiquitin-like modifier activating enzyme 3 639 81 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9550.[MT7]-RIIPAVASTNAVIAAVC[CAM]ATEVFK[MT7].3b8_1.heavy 897.182 / 952.606 1723.0 42.602901458740234 37 7 10 10 10 1.1687747339734305 85.55968664725881 0.0 3 0.7395124351146787 2.3635018070590097 1723.0 3.6170780141843974 2.0 - - - - - - - 264.4375 3 16 UBA3 ubiquitin-like modifier activating enzyme 3 641 81 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9550.[MT7]-RIIPAVASTNAVIAAVC[CAM]ATEVFK[MT7].3b7_1.heavy 897.182 / 865.574 4386.0 42.602901458740234 37 7 10 10 10 1.1687747339734305 85.55968664725881 0.0 3 0.7395124351146787 2.3635018070590097 4386.0 2.912625284225439 1.0 - - - - - - - 330.6666666666667 8 9 UBA3 ubiquitin-like modifier activating enzyme 3 643 82 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9557.[MT7]-YLTEALQSISELELEDK[MT7]LEK[MT7].4y11_2.heavy 696.638 / 810.95 70011.0 43.52909851074219 43 13 10 10 10 0.8505152189052915 76.15648941933334 0.0 3 0.9041920786603797 3.9548652605211023 70011.0 542.58525 0.0 - - - - - - - 250.0 140 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 645 82 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9557.[MT7]-YLTEALQSISELELEDK[MT7]LEK[MT7].4b4_1.heavy 696.638 / 651.347 32382.0 43.52909851074219 43 13 10 10 10 0.8505152189052915 76.15648941933334 0.0 3 0.9041920786603797 3.9548652605211023 32382.0 63.9753808173478 0.0 - - - - - - - 806.25 64 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 647 82 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9557.[MT7]-YLTEALQSISELELEDK[MT7]LEK[MT7].4b5_1.heavy 696.638 / 722.384 89051.0 43.52909851074219 43 13 10 10 10 0.8505152189052915 76.15648941933334 0.0 3 0.9041920786603797 3.9548652605211023 89051.0 204.53637970513137 0.0 - - - - - - - 300.0 178 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 649 82 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9557.[MT7]-YLTEALQSISELELEDK[MT7]LEK[MT7].4b6_1.heavy 696.638 / 835.468 22038.0 43.52909851074219 43 13 10 10 10 0.8505152189052915 76.15648941933334 0.0 3 0.9041920786603797 3.9548652605211023 22038.0 159.4082 0.0 - - - - - - - 206.25 44 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 651 83 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9556.[MT7]-TC[CAM]QVLEALNVLVNRPNIREPLR.4b7_1.heavy 687.891 / 946.478 14907.0 40.1260986328125 50 20 10 10 10 5.754081581280466 17.378968057270196 0.0 3 0.9932075581480014 14.96591491329666 14907.0 90.90552127089106 0.0 - - - - - - - 183.8 29 10 UBE2L6 ubiquitin-conjugating enzyme E2L 6 653 83 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9556.[MT7]-TC[CAM]QVLEALNVLVNRPNIREPLR.4b4_1.heavy 687.891 / 633.315 33499.0 40.1260986328125 50 20 10 10 10 5.754081581280466 17.378968057270196 0.0 3 0.9932075581480014 14.96591491329666 33499.0 68.74794776119403 0.0 - - - - - - - 645.7142857142857 66 7 UBE2L6 ubiquitin-conjugating enzyme E2L 6 655 83 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9556.[MT7]-TC[CAM]QVLEALNVLVNRPNIREPLR.4b6_1.heavy 687.891 / 875.441 15577.0 40.1260986328125 50 20 10 10 10 5.754081581280466 17.378968057270196 0.0 3 0.9932075581480014 14.96591491329666 15577.0 49.89800330456125 0.0 - - - - - - - 251.0 31 10 UBE2L6 ubiquitin-conjugating enzyme E2L 6 657 83 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9556.[MT7]-TC[CAM]QVLEALNVLVNRPNIREPLR.4b3_1.heavy 687.891 / 534.246 22109.0 40.1260986328125 50 20 10 10 10 5.754081581280466 17.378968057270196 0.0 3 0.9932075581480014 14.96591491329666 22109.0 141.03097850748404 0.0 - - - - - - - 228.0909090909091 44 11 UBE2L6 ubiquitin-conjugating enzyme E2L 6 659 84 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9555.[MT7]-FEEAHFTFALTPQQVQQILTSR.3b4_1.heavy 912.481 / 621.3 6092.0 42.48109817504883 46 16 10 10 10 2.642626746499804 37.84113671461601 0.0 3 0.9635343738890563 6.443055683488581 6092.0 5.217582119798811 0.0 - - - - - - - 312.2857142857143 12 7 PIAS3 protein inhibitor of activated STAT, 3 661 84 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9555.[MT7]-FEEAHFTFALTPQQVQQILTSR.3b5_1.heavy 912.481 / 758.359 4843.0 42.48109817504883 46 16 10 10 10 2.642626746499804 37.84113671461601 0.0 3 0.9635343738890563 6.443055683488581 4843.0 15.411594833587685 0.0 - - - - - - - 296.7 9 10 PIAS3 protein inhibitor of activated STAT, 3 663 84 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9555.[MT7]-FEEAHFTFALTPQQVQQILTSR.3b3_1.heavy 912.481 / 550.263 4218.0 42.48109817504883 46 16 10 10 10 2.642626746499804 37.84113671461601 0.0 3 0.9635343738890563 6.443055683488581 4218.0 29.584975015835035 0.0 - - - - - - - 252.23076923076923 8 13 PIAS3 protein inhibitor of activated STAT, 3 665 84 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9555.[MT7]-FEEAHFTFALTPQQVQQILTSR.3y8_1.heavy 912.481 / 944.552 4686.0 42.48109817504883 46 16 10 10 10 2.642626746499804 37.84113671461601 0.0 3 0.9635343738890563 6.443055683488581 4686.0 6.6000000000000005 0.0 - - - - - - - 265.5 9 10 PIAS3 protein inhibitor of activated STAT, 3 667 85 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9554.[MT7]-VETELQGVC[CAM]DTVLGLLDSHLIK[MT7].4b5_1.heavy 682.626 / 716.395 1526.0 50.063876152038574 39 17 10 6 6 3.800197740994004 26.314420147474575 0.030902862548828125 5 0.975158362334834 7.813922268512898 1526.0 6.513414634146341 0.0 - - - - - - - 152.31578947368422 3 19 SFN stratifin 669 85 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9554.[MT7]-VETELQGVC[CAM]DTVLGLLDSHLIK[MT7].4b7_1.heavy 682.626 / 901.475 709.0 50.063876152038574 39 17 10 6 6 3.800197740994004 26.314420147474575 0.030902862548828125 5 0.975158362334834 7.813922268512898 709.0 13.652415964523282 0.0 - - - - - - - 0.0 1 0 SFN stratifin 671 85 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9554.[MT7]-VETELQGVC[CAM]DTVLGLLDSHLIK[MT7].4y3_1.heavy 682.626 / 517.383 763.0 50.063876152038574 39 17 10 6 6 3.800197740994004 26.314420147474575 0.030902862548828125 5 0.975158362334834 7.813922268512898 763.0 4.8999999999999995 4.0 - - - - - - - 186.27586206896552 3 29 SFN stratifin 673 85 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9554.[MT7]-VETELQGVC[CAM]DTVLGLLDSHLIK[MT7].4b4_1.heavy 682.626 / 603.311 2398.0 50.063876152038574 39 17 10 6 6 3.800197740994004 26.314420147474575 0.030902862548828125 5 0.975158362334834 7.813922268512898 2398.0 14.959999999999997 0.0 - - - - - - - 122.23809523809524 4 21 SFN stratifin 675 86 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9549.[MT7]-YFDQWSESDQVEFVEHLISR.4y5_1.heavy 665.32 / 625.378 N/A N/A - - - - - - - - - 0.0 - - - - - - - FBXW11 F-box and WD repeat domain containing 11 677 86 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9549.[MT7]-YFDQWSESDQVEFVEHLISR.4y9_1.heavy 665.32 / 1129.6 N/A N/A - - - - - - - - - 0.0 - - - - - - - FBXW11 F-box and WD repeat domain containing 11 679 86 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9549.[MT7]-YFDQWSESDQVEFVEHLISR.4y6_1.heavy 665.32 / 754.421 N/A N/A - - - - - - - - - 0.0 - - - - - - - FBXW11 F-box and WD repeat domain containing 11 681 86 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9549.[MT7]-YFDQWSESDQVEFVEHLISR.4b3_1.heavy 665.32 / 570.268 N/A N/A - - - - - - - - - 0.0 - - - - - - - FBXW11 F-box and WD repeat domain containing 11 683 87 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9352.[MT7]-RVSAIVEQSWR.2y9_1.heavy 737.916 / 1075.55 3846.0 27.428600311279297 45 15 10 10 10 1.9194462470260034 41.601891644195646 0.0 3 0.9549234532915888 5.790846120318583 3846.0 7.695761589403973 1.0 - - - - - - - 290.85714285714283 7 7 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 685 87 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9352.[MT7]-RVSAIVEQSWR.2b6_1.heavy 737.916 / 770.5 4299.0 27.428600311279297 45 15 10 10 10 1.9194462470260034 41.601891644195646 0.0 3 0.9549234532915888 5.790846120318583 4299.0 21.015104591604 0.0 - - - - - - - 290.85714285714283 8 7 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 687 87 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9352.[MT7]-RVSAIVEQSWR.2b7_1.heavy 737.916 / 899.543 6788.0 27.428600311279297 45 15 10 10 10 1.9194462470260034 41.601891644195646 0.0 3 0.9549234532915888 5.790846120318583 6788.0 17.536690147030406 0.0 - - - - - - - 301.6666666666667 13 6 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 689 87 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9352.[MT7]-RVSAIVEQSWR.2y10_1.heavy 737.916 / 1174.62 4299.0 27.428600311279297 45 15 10 10 10 1.9194462470260034 41.601891644195646 0.0 3 0.9549234532915888 5.790846120318583 4299.0 2.107916636915958 1.0 - - - - - - - 271.4 9 5 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 691 88 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9547.[MT7]-VESLAMFLGELSLIDADPYLK[MT7].3b6_1.heavy 871.476 / 775.414 5958.0 52.601898193359375 43 13 10 10 10 1.0187396246491258 57.01353344393437 0.0 3 0.9031992237085266 3.9341935913313235 5958.0 64.28816375920138 0.0 - - - - - - - 117.15 11 20 CCNA2 cyclin A2 693 88 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9547.[MT7]-VESLAMFLGELSLIDADPYLK[MT7].3b5_1.heavy 871.476 / 644.374 4551.0 52.601898193359375 43 13 10 10 10 1.0187396246491258 57.01353344393437 0.0 3 0.9031992237085266 3.9341935913313235 4551.0 34.90525121856606 0.0 - - - - - - - 139.27777777777777 9 18 CCNA2 cyclin A2 695 88 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9547.[MT7]-VESLAMFLGELSLIDADPYLK[MT7].3y4_1.heavy 871.476 / 664.415 9641.0 52.601898193359375 43 13 10 10 10 1.0187396246491258 57.01353344393437 0.0 3 0.9031992237085266 3.9341935913313235 9641.0 45.82104363636364 0.0 - - - - - - - 179.4 19 20 CCNA2 cyclin A2 697 88 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9547.[MT7]-VESLAMFLGELSLIDADPYLK[MT7].3b7_1.heavy 871.476 / 922.482 3425.0 52.601898193359375 43 13 10 10 10 1.0187396246491258 57.01353344393437 0.0 3 0.9031992237085266 3.9341935913313235 3425.0 63.46833839918947 0.0 - - - - - - - 108.88235294117646 6 17 CCNA2 cyclin A2 699 89 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9548.[MT7]-VLAFDLTVPTTNQFLLQYLRR.4y12_2.heavy 663.88 / 776.933 2368.0 45.20014953613281 36 10 10 6 10 1.1436342461854674 52.5090792516582 0.036102294921875 3 0.8245384176276278 2.90206026833563 2368.0 11.089113673947125 0.0 - - - - - - - 213.71428571428572 4 7 CCNA1 cyclin A1 701 89 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9548.[MT7]-VLAFDLTVPTTNQFLLQYLRR.4b4_1.heavy 663.88 / 575.367 3489.0 45.20014953613281 36 10 10 6 10 1.1436342461854674 52.5090792516582 0.036102294921875 3 0.8245384176276278 2.90206026833563 3489.0 38.848123373493976 0.0 - - - - - - - 231.5 6 14 CCNA1 cyclin A1 703 89 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9548.[MT7]-VLAFDLTVPTTNQFLLQYLRR.4y13_2.heavy 663.88 / 825.46 25047.0 45.20014953613281 36 10 10 6 10 1.1436342461854674 52.5090792516582 0.036102294921875 3 0.8245384176276278 2.90206026833563 25047.0 161.53090715804393 0.0 - - - - - - - 215.45454545454547 50 11 CCNA1 cyclin A1 705 89 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9548.[MT7]-VLAFDLTVPTTNQFLLQYLRR.4b5_1.heavy 663.88 / 690.394 8848.0 45.20014953613281 36 10 10 6 10 1.1436342461854674 52.5090792516582 0.036102294921875 3 0.8245384176276278 2.90206026833563 8848.0 23.575730337078646 0.0 - - - - - - - 220.53846153846155 17 13 CCNA1 cyclin A1 707 90 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9215.[MT7]-YSSSQPEPR.2y8_1.heavy 597.797 / 887.422 12352.0 16.54599952697754 44 14 10 10 10 1.5418129550309894 51.0166163589097 0.0 3 0.9366553371410018 4.87739285049968 12352.0 33.510207272481175 0.0 - - - - - - - 361.75 24 8 CHEK1 CHK1 checkpoint homolog (S. pombe) 709 90 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9215.[MT7]-YSSSQPEPR.2y6_1.heavy 597.797 / 713.358 1982.0 16.54599952697754 44 14 10 10 10 1.5418129550309894 51.0166163589097 0.0 3 0.9366553371410018 4.87739285049968 1982.0 6.541683060109289 0.0 - - - - - - - 270.8888888888889 3 9 CHEK1 CHK1 checkpoint homolog (S. pombe) 711 90 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9215.[MT7]-YSSSQPEPR.2b7_1.heavy 597.797 / 923.423 7930.0 16.54599952697754 44 14 10 10 10 1.5418129550309894 51.0166163589097 0.0 3 0.9366553371410018 4.87739285049968 7930.0 18.946129334582942 0.0 - - - - - - - 279.3333333333333 15 6 CHEK1 CHK1 checkpoint homolog (S. pombe) 713 90 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9215.[MT7]-YSSSQPEPR.2b5_1.heavy 597.797 / 697.327 3812.0 16.54599952697754 44 14 10 10 10 1.5418129550309894 51.0166163589097 0.0 3 0.9366553371410018 4.87739285049968 3812.0 11.363362416536397 1.0 - - - - - - - 266.5 11 8 CHEK1 CHK1 checkpoint homolog (S. pombe) 715 91 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9213.[MT7]-SIVSVGDPK[MT7].2b4_1.heavy 595.355 / 531.326 21106.0 24.226600646972656 47 17 10 10 10 3.1200678879803925 32.050584663633586 0.0 3 0.9792775176121346 8.558322403161107 21106.0 14.992112925874485 0.0 - - - - - - - 707.25 42 8 PAK1;PAK3 p21 protein (Cdc42/Rac)-activated kinase 1;p21 protein (Cdc42/Rac)-activated kinase 3 717 91 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9213.[MT7]-SIVSVGDPK[MT7].2b6_1.heavy 595.355 / 687.416 7398.0 24.226600646972656 47 17 10 10 10 3.1200678879803925 32.050584663633586 0.0 3 0.9792775176121346 8.558322403161107 7398.0 22.95931034482759 3.0 - - - - - - - 373.0 33 7 PAK1;PAK3 p21 protein (Cdc42/Rac)-activated kinase 1;p21 protein (Cdc42/Rac)-activated kinase 3 719 91 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9213.[MT7]-SIVSVGDPK[MT7].2b7_1.heavy 595.355 / 802.443 154484.0 24.226600646972656 47 17 10 10 10 3.1200678879803925 32.050584663633586 0.0 3 0.9792775176121346 8.558322403161107 154484.0 170.3914261953961 0.0 - - - - - - - 380.75 308 4 PAK1;PAK3 p21 protein (Cdc42/Rac)-activated kinase 1;p21 protein (Cdc42/Rac)-activated kinase 3 721 91 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9213.[MT7]-SIVSVGDPK[MT7].2y2_1.heavy 595.355 / 388.268 373807.0 24.226600646972656 47 17 10 10 10 3.1200678879803925 32.050584663633586 0.0 3 0.9792775176121346 8.558322403161107 373807.0 265.178459946828 0.0 - - - - - - - 435.0 747 2 PAK1;PAK3 p21 protein (Cdc42/Rac)-activated kinase 1;p21 protein (Cdc42/Rac)-activated kinase 3 723 92 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 SUCC_ECO24.LVQQFTK.2y4.peptide 432.25 / 523.29 154338.0 21.079599380493164 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 154338.0 277.0158145658263 0.0 - - - - - - - 735.0 308 9 725 92 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 SUCC_ECO24.LVQQFTK.2y6.peptide 432.25 / 750.41 292997.0 21.079599380493164 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 292997.0 433.0438394798621 0.0 - - - - - - - 1676.375 585 8 727 92 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 SUCC_ECO24.LVQQFTK.2y5.peptide 432.25 / 651.35 757861.0 21.079599380493164 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 757861.0 435.3217728460253 0.0 - - - - - - - 378.0 1515 2 729 93 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9211.[MT7]-QQLQEELR.2b3_1.heavy 594.329 / 514.311 9596.0 23.08099937438965 43 13 10 10 10 2.6729892411847054 33.25175097736181 0.0 3 0.924162176464438 4.452826754180399 9596.0 11.398537430795955 0.0 - - - - - - - 362.6666666666667 19 9 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 731 93 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9211.[MT7]-QQLQEELR.2b4_1.heavy 594.329 / 642.369 4288.0 23.08099937438965 43 13 10 10 10 2.6729892411847054 33.25175097736181 0.0 3 0.924162176464438 4.452826754180399 4288.0 8.138528047544408 0.0 - - - - - - - 294.6666666666667 8 9 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 733 93 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9211.[MT7]-QQLQEELR.2y6_1.heavy 594.329 / 787.431 9801.0 23.08099937438965 43 13 10 10 10 2.6729892411847054 33.25175097736181 0.0 3 0.924162176464438 4.452826754180399 9801.0 25.666075324317468 0.0 - - - - - - - 638.5 19 8 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 735 93 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9211.[MT7]-QQLQEELR.2y7_1.heavy 594.329 / 915.489 26135.0 23.08099937438965 43 13 10 10 10 2.6729892411847054 33.25175097736181 0.0 3 0.924162176464438 4.452826754180399 26135.0 121.70710784313727 0.0 - - - - - - - 266.7692307692308 52 13 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 737 94 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9350.[MT7]-SQAQATISFPK[MT7].2y8_1.heavy 733.416 / 1035.6 8585.0 27.29400062561035 44 14 10 10 10 1.9043445621139239 42.44919147790076 0.0 3 0.9339926851507396 4.776920416899439 8585.0 20.57614306784661 0.0 - - - - - - - 271.2 17 5 CDC6 cell division cycle 6 homolog (S. cerevisiae) 739 94 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9350.[MT7]-SQAQATISFPK[MT7].2y9_1.heavy 733.416 / 1106.63 4519.0 27.29400062561035 44 14 10 10 10 1.9043445621139239 42.44919147790076 0.0 3 0.9339926851507396 4.776920416899439 4519.0 15.319943215339233 0.0 - - - - - - - 452.0 9 3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 741 94 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9350.[MT7]-SQAQATISFPK[MT7].2b4_1.heavy 733.416 / 559.296 16041.0 27.29400062561035 44 14 10 10 10 1.9043445621139239 42.44919147790076 0.0 3 0.9339926851507396 4.776920416899439 16041.0 10.374804975277282 0.0 - - - - - - - 361.6 32 5 CDC6 cell division cycle 6 homolog (S. cerevisiae) 743 94 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9350.[MT7]-SQAQATISFPK[MT7].2b5_1.heavy 733.416 / 630.333 23044.0 27.29400062561035 44 14 10 10 10 1.9043445621139239 42.44919147790076 0.0 3 0.9339926851507396 4.776920416899439 23044.0 27.190560471976404 0.0 - - - - - - - 376.6666666666667 46 12 CDC6 cell division cycle 6 homolog (S. cerevisiae) 745 95 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9212.[MT7]-K[MT7]LFLQLIAEFK[MT7].3y3_1.heavy 594.713 / 567.326 16031.0 44.53690052032471 39 13 10 6 10 3.072094840253315 27.825594285574155 0.038402557373046875 3 0.9292861236518979 4.61335618474874 16031.0 53.52364773932885 0.0 - - - - - - - 253.16666666666666 32 12 POLE polymerase (DNA directed), epsilon 747 95 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9212.[MT7]-K[MT7]LFLQLIAEFK[MT7].3b3_1.heavy 594.713 / 677.459 4837.0 44.53690052032471 39 13 10 6 10 3.072094840253315 27.825594285574155 0.038402557373046875 3 0.9292861236518979 4.61335618474874 4837.0 37.84565217391304 1.0 - - - - - - - 304.1 9 10 POLE polymerase (DNA directed), epsilon 749 95 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9212.[MT7]-K[MT7]LFLQLIAEFK[MT7].3y4_1.heavy 594.713 / 638.363 49060.0 44.53690052032471 39 13 10 6 10 3.072094840253315 27.825594285574155 0.038402557373046875 3 0.9292861236518979 4.61335618474874 49060.0 382.30746306910856 0.0 - - - - - - - 184.16666666666666 98 6 POLE polymerase (DNA directed), epsilon 751 95 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9212.[MT7]-K[MT7]LFLQLIAEFK[MT7].3y5_1.heavy 594.713 / 751.447 20591.0 44.53690052032471 39 13 10 6 10 3.072094840253315 27.825594285574155 0.038402557373046875 3 0.9292861236518979 4.61335618474874 20591.0 101.57194503869627 0.0 - - - - - - - 193.3 41 10 POLE polymerase (DNA directed), epsilon 753 96 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9405.[MT7]-TLTPASSPVSSPSK[MT7].3y3_1.heavy 549.645 / 475.3 45576.0 22.574399948120117 43 17 10 6 10 3.8263087393628985 26.13484870451164 0.03659820556640625 3 0.9743012638264898 7.681959360074038 45576.0 42.49009732139942 0.0 - - - - - - - 268.0 91 3 FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) 755 96 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9405.[MT7]-TLTPASSPVSSPSK[MT7].3b5_1.heavy 549.645 / 628.379 11645.0 22.574399948120117 43 17 10 6 10 3.8263087393628985 26.13484870451164 0.03659820556640625 3 0.9743012638264898 7.681959360074038 11645.0 5.193458927104299 0.0 - - - - - - - 335.0 23 6 FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) 757 96 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9405.[MT7]-TLTPASSPVSSPSK[MT7].3y4_1.heavy 549.645 / 562.332 18271.0 22.574399948120117 43 17 10 6 10 3.8263087393628985 26.13484870451164 0.03659820556640625 3 0.9743012638264898 7.681959360074038 18271.0 15.698503247284833 0.0 - - - - - - - 373.2857142857143 36 7 FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) 759 96 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9405.[MT7]-TLTPASSPVSSPSK[MT7].3y5_1.heavy 549.645 / 649.364 36541.0 22.574399948120117 43 17 10 6 10 3.8263087393628985 26.13484870451164 0.03659820556640625 3 0.9743012638264898 7.681959360074038 36541.0 87.38336792986034 0.0 - - - - - - - 234.5 73 6 FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) 761 97 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9540.[MT7]-VLSLTMSPDGATVASAAADETLR.3y8_1.heavy 807.42 / 846.432 1850.0 36.60094928741455 38 18 6 6 8 3.7436743833932695 26.711724834722382 0.031803131103515625 4 0.9817786820922404 9.128739445578294 1850.0 3.2184764991896273 0.0 - - - - - - - 281.05882352941177 3 17 CDC20 cell division cycle 20 homolog (S. cerevisiae) 763 97 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9540.[MT7]-VLSLTMSPDGATVASAAADETLR.3b7_1.heavy 807.42 / 876.498 4009.0 36.60094928741455 38 18 6 6 8 3.7436743833932695 26.711724834722382 0.031803131103515625 4 0.9817786820922404 9.128739445578294 4009.0 12.990927675542846 1.0 - - - - - - - 324.63157894736844 12 19 CDC20 cell division cycle 20 homolog (S. cerevisiae) 765 97 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9540.[MT7]-VLSLTMSPDGATVASAAADETLR.3y10_1.heavy 807.42 / 1004.5 3546.0 36.60094928741455 38 18 6 6 8 3.7436743833932695 26.711724834722382 0.031803131103515625 4 0.9817786820922404 9.128739445578294 3546.0 9.65250551631545 0.0 - - - - - - - 277.4 7 10 CDC20 cell division cycle 20 homolog (S. cerevisiae) 767 97 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9540.[MT7]-VLSLTMSPDGATVASAAADETLR.3y9_1.heavy 807.42 / 933.464 3546.0 36.60094928741455 38 18 6 6 8 3.7436743833932695 26.711724834722382 0.031803131103515625 4 0.9817786820922404 9.128739445578294 3546.0 13.249632829373649 0.0 - - - - - - - 290.1764705882353 7 17 CDC20 cell division cycle 20 homolog (S. cerevisiae) 769 98 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9339.[MT7]-LREIEENQK[MT7].3b6_1.heavy 482.943 / 914.506 5010.0 20.5575008392334 39 11 10 10 8 0.9892008833428004 61.86597276578488 0.0 4 0.875499585426255 3.4607053603222075 5010.0 30.538165286384434 0.0 - - - - - - - 216.83333333333334 10 6 SMC1A structural maintenance of chromosomes 1A 771 98 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9339.[MT7]-LREIEENQK[MT7].3y3_1.heavy 482.943 / 533.316 22824.0 20.5575008392334 39 11 10 10 8 0.9892008833428004 61.86597276578488 0.0 4 0.875499585426255 3.4607053603222075 22824.0 57.21380053908355 0.0 - - - - - - - 765.375 45 8 SMC1A structural maintenance of chromosomes 1A 773 98 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9339.[MT7]-LREIEENQK[MT7].3b5_1.heavy 482.943 / 785.464 12618.0 20.5575008392334 39 11 10 10 8 0.9892008833428004 61.86597276578488 0.0 4 0.875499585426255 3.4607053603222075 12618.0 17.997936155833173 0.0 - - - - - - - 291.7142857142857 25 7 SMC1A structural maintenance of chromosomes 1A 775 98 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9339.[MT7]-LREIEENQK[MT7].3b3_1.heavy 482.943 / 543.337 7051.0 20.5575008392334 39 11 10 10 8 0.9892008833428004 61.86597276578488 0.0 4 0.875499585426255 3.4607053603222075 7051.0 11.032429447869719 2.0 - - - - - - - 689.4285714285714 31 7 SMC1A structural maintenance of chromosomes 1A 777 99 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9542.[MT7]-RVFC[CAM]NFQYAPQLAEALIK[MT7].4b7_1.heavy 614.84 / 1096.55 3774.0 38.98382377624512 34 8 10 6 10 0.5895840150071818 91.4035752133301 0.03730010986328125 3 0.7615979823426342 2.4755708024706826 3774.0 18.63987804878049 0.0 - - - - - - - 309.77777777777777 7 9 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 779 99 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9542.[MT7]-RVFC[CAM]NFQYAPQLAEALIK[MT7].4b7_2.heavy 614.84 / 548.778 16243.0 38.98382377624512 34 8 10 6 10 0.5895840150071818 91.4035752133301 0.03730010986328125 3 0.7615979823426342 2.4755708024706826 16243.0 78.24371951219513 0.0 - - - - - - - 257.7142857142857 32 14 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 781 99 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9542.[MT7]-RVFC[CAM]NFQYAPQLAEALIK[MT7].4b5_1.heavy 614.84 / 821.421 3281.0 38.98382377624512 34 8 10 6 10 0.5895840150071818 91.4035752133301 0.03730010986328125 3 0.7615979823426342 2.4755708024706826 3281.0 22.106737804878048 0.0 - - - - - - - 257.7142857142857 6 7 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 783 99 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9542.[MT7]-RVFC[CAM]NFQYAPQLAEALIK[MT7].4b9_2.heavy 614.84 / 665.828 27565.0 38.98382377624512 34 8 10 6 10 0.5895840150071818 91.4035752133301 0.03730010986328125 3 0.7615979823426342 2.4755708024706826 27565.0 118.07568597560976 0.0 - - - - - - - 246.0 55 10 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 785 100 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9541.[MT7]-FC[CAM]YEDDLLTVSAVFPEVQR.3b6_1.heavy 811.402 / 974.368 N/A N/A - - - - - - - - - 0.0 - - - - - - - DET1 de-etiolated homolog 1 (Arabidopsis) 787 100 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9541.[MT7]-FC[CAM]YEDDLLTVSAVFPEVQR.3y5_1.heavy 811.402 / 628.341 N/A N/A - - - - - - - - - 0.0 - - - - - - - DET1 de-etiolated homolog 1 (Arabidopsis) 789 100 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9541.[MT7]-FC[CAM]YEDDLLTVSAVFPEVQR.3b7_1.heavy 811.402 / 1087.45 N/A N/A - - - - - - - - - 0.0 - - - - - - - DET1 de-etiolated homolog 1 (Arabidopsis) 791 100 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9541.[MT7]-FC[CAM]YEDDLLTVSAVFPEVQR.3y9_1.heavy 811.402 / 1032.55 N/A N/A - - - - - - - - - 0.0 - - - - - - - DET1 de-etiolated homolog 1 (Arabidopsis) 793 101 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9544.[MT7]-VLAFDLTVPTTNQFLLQYLR.3y7_1.heavy 832.804 / 952.562 15916.0 48.39590072631836 50 20 10 10 10 8.617819115504437 11.603863884783635 0.0 3 0.9965439492700704 20.986845117410777 15916.0 70.82776962524655 0.0 - - - - - - - 205.0 31 15 CCNA1 cyclin A1 795 101 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9544.[MT7]-VLAFDLTVPTTNQFLLQYLR.3y6_1.heavy 832.804 / 805.493 14940.0 48.39590072631836 50 20 10 10 10 8.617819115504437 11.603863884783635 0.0 3 0.9965439492700704 20.986845117410777 14940.0 41.54199733688416 0.0 - - - - - - - 260.5263157894737 29 19 CCNA1 cyclin A1 797 101 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9544.[MT7]-VLAFDLTVPTTNQFLLQYLR.3b4_1.heavy 832.804 / 575.367 15691.0 48.39590072631836 50 20 10 10 10 8.617819115504437 11.603863884783635 0.0 3 0.9965439492700704 20.986845117410777 15691.0 57.882355555555556 0.0 - - - - - - - 312.5 31 18 CCNA1 cyclin A1 799 101 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9544.[MT7]-VLAFDLTVPTTNQFLLQYLR.3b5_1.heavy 832.804 / 690.394 52102.0 48.39590072631836 50 20 10 10 10 8.617819115504437 11.603863884783635 0.0 3 0.9965439492700704 20.986845117410777 52102.0 111.80225141904498 0.0 - - - - - - - 709.3333333333334 104 9 CCNA1 cyclin A1 801 102 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9543.[MT7]-ALYENMLVELPFAGFFLSK[MT7].3b6_1.heavy 826.451 / 866.42 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE3C ubiquitin protein ligase E3C 803 102 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9543.[MT7]-ALYENMLVELPFAGFFLSK[MT7].3b4_1.heavy 826.451 / 621.336 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE3C ubiquitin protein ligase E3C 805 102 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9543.[MT7]-ALYENMLVELPFAGFFLSK[MT7].3b5_1.heavy 826.451 / 735.379 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE3C ubiquitin protein ligase E3C 807 102 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9543.[MT7]-ALYENMLVELPFAGFFLSK[MT7].3b7_1.heavy 826.451 / 979.504 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE3C ubiquitin protein ligase E3C 809 103 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9546.[MT7]-LC[CAM]DFGVSGQLIDSMANSFVGTR.3y11_1.heavy 840.078 / 1184.54 9032.0 45.30845069885254 43 17 10 6 10 5.169911995846279 19.34268902069206 0.036098480224609375 3 0.9715489378095068 7.299246590301702 9032.0 80.86325864453666 0.0 - - - - - - - 240.72727272727272 18 11 MAP2K1;MAP2K2 mitogen-activated protein kinase kinase 1;mitogen-activated protein kinase kinase 2 811 103 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9546.[MT7]-LC[CAM]DFGVSGQLIDSMANSFVGTR.3b5_1.heavy 840.078 / 737.341 11681.0 45.30845069885254 43 17 10 6 10 5.169911995846279 19.34268902069206 0.036098480224609375 3 0.9715489378095068 7.299246590301702 11681.0 23.841857008053154 0.0 - - - - - - - 262.72727272727275 23 11 MAP2K1;MAP2K2 mitogen-activated protein kinase kinase 1;mitogen-activated protein kinase kinase 2 813 103 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9546.[MT7]-LC[CAM]DFGVSGQLIDSMANSFVGTR.3b3_1.heavy 840.078 / 533.251 5539.0 45.30845069885254 43 17 10 6 10 5.169911995846279 19.34268902069206 0.036098480224609375 3 0.9715489378095068 7.299246590301702 5539.0 8.056926910299003 2.0 - - - - - - - 314.9230769230769 11 13 MAP2K1;MAP2K2 mitogen-activated protein kinase kinase 1;mitogen-activated protein kinase kinase 2 815 103 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9546.[MT7]-LC[CAM]DFGVSGQLIDSMANSFVGTR.3y10_1.heavy 840.078 / 1069.51 5780.0 45.30845069885254 43 17 10 6 10 5.169911995846279 19.34268902069206 0.036098480224609375 3 0.9715489378095068 7.299246590301702 5780.0 12.780944588480002 0.0 - - - - - - - 233.64705882352942 11 17 MAP2K1;MAP2K2 mitogen-activated protein kinase kinase 1;mitogen-activated protein kinase kinase 2 817 104 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9545.[MT7]-YSTPVDIWSIGTIFAELATK[MT7].3y7_1.heavy 834.124 / 923.532 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDK1 cyclin-dependent kinase 1 819 104 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9545.[MT7]-YSTPVDIWSIGTIFAELATK[MT7].3y6_1.heavy 834.124 / 776.463 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDK1 cyclin-dependent kinase 1 821 104 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9545.[MT7]-YSTPVDIWSIGTIFAELATK[MT7].3b6_1.heavy 834.124 / 807.401 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDK1 cyclin-dependent kinase 1 823 104 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9545.[MT7]-YSTPVDIWSIGTIFAELATK[MT7].3b7_1.heavy 834.124 / 920.485 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDK1 cyclin-dependent kinase 1 825 105 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9536.[MT7]-FVNDLGVDEAGIDQDGVFK[MT7].3b6_1.heavy 776.065 / 790.422 35094.0 35.811798095703125 44 14 10 10 10 1.1983712711509324 51.32445689556517 0.0 3 0.936255298434551 4.861898426152946 35094.0 33.27677822177822 0.0 - - - - - - - 780.0 70 7 UBE3B ubiquitin protein ligase E3B 827 105 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9536.[MT7]-FVNDLGVDEAGIDQDGVFK[MT7].3b4_1.heavy 776.065 / 620.316 35874.0 35.811798095703125 44 14 10 10 10 1.1983712711509324 51.32445689556517 0.0 3 0.936255298434551 4.861898426152946 35874.0 54.84234265734266 0.0 - - - - - - - 312.0 71 7 UBE3B ubiquitin protein ligase E3B 829 105 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9536.[MT7]-FVNDLGVDEAGIDQDGVFK[MT7].3b5_1.heavy 776.065 / 733.4 20433.0 35.811798095703125 44 14 10 10 10 1.1983712711509324 51.32445689556517 0.0 3 0.936255298434551 4.861898426152946 20433.0 26.38326923076923 0.0 - - - - - - - 1230.6666666666667 40 9 UBE3B ubiquitin protein ligase E3B 831 105 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9536.[MT7]-FVNDLGVDEAGIDQDGVFK[MT7].3y4_1.heavy 776.065 / 594.373 36966.0 35.811798095703125 44 14 10 10 10 1.1983712711509324 51.32445689556517 0.0 3 0.936255298434551 4.861898426152946 36966.0 35.37967414529914 0.0 - - - - - - - 312.0 73 6 UBE3B ubiquitin protein ligase E3B 833 106 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9537.[MT7]-MQTVTAAVEELLVAAQRQDR.4b7_1.heavy 594.072 / 847.446 N/A N/A - - - - - - - - - 0.0 - - - - - - - GADD45B growth arrest and DNA-damage-inducible, beta 835 106 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9537.[MT7]-MQTVTAAVEELLVAAQRQDR.4y10_2.heavy 594.072 / 585.341 N/A N/A - - - - - - - - - 0.0 - - - - - - - GADD45B growth arrest and DNA-damage-inducible, beta 837 106 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9537.[MT7]-MQTVTAAVEELLVAAQRQDR.4b5_1.heavy 594.072 / 705.372 N/A N/A - - - - - - - - - 0.0 - - - - - - - GADD45B growth arrest and DNA-damage-inducible, beta 839 106 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9537.[MT7]-MQTVTAAVEELLVAAQRQDR.4b3_1.heavy 594.072 / 505.256 N/A N/A - - - - - - - - - 0.0 - - - - - - - GADD45B growth arrest and DNA-damage-inducible, beta 841 107 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9342.[MT7]-LC[CAM]NEEQELLR.2b3_1.heavy 724.37 / 532.267 5507.0 29.679100036621094 46 16 10 10 10 3.9783635670341604 25.135963145406855 0.0 3 0.9698224236755294 7.086339173593728 5507.0 28.933226563660675 0.0 - - - - - - - 296.8 11 10 CDC16 cell division cycle 16 homolog (S. cerevisiae) 843 107 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9342.[MT7]-LC[CAM]NEEQELLR.2y8_1.heavy 724.37 / 1030.52 8896.0 29.679100036621094 46 16 10 10 10 3.9783635670341604 25.135963145406855 0.0 3 0.9698224236755294 7.086339173593728 8896.0 25.604412465750375 0.0 - - - - - - - 306.22222222222223 17 9 CDC16 cell division cycle 16 homolog (S. cerevisiae) 845 107 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9342.[MT7]-LC[CAM]NEEQELLR.2y9_1.heavy 724.37 / 1190.55 22664.0 29.679100036621094 46 16 10 10 10 3.9783635670341604 25.135963145406855 0.0 3 0.9698224236755294 7.086339173593728 22664.0 119.78821334125686 0.0 - - - - - - - 212.0 45 8 CDC16 cell division cycle 16 homolog (S. cerevisiae) 847 107 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9342.[MT7]-LC[CAM]NEEQELLR.2b5_1.heavy 724.37 / 790.352 5931.0 29.679100036621094 46 16 10 10 10 3.9783635670341604 25.135963145406855 0.0 3 0.9698224236755294 7.086339173593728 5931.0 19.97031406923191 0.0 - - - - - - - 329.77777777777777 11 9 CDC16 cell division cycle 16 homolog (S. cerevisiae) 849 108 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9538.[MT7]-AVAWC[CAM]PWQSNVLATGGGTSDR.3b5_1.heavy 793.054 / 732.362 15509.0 36.12735080718994 43 17 10 6 10 2.8406064333572534 35.20375044768595 0.030597686767578125 3 0.9716935241949243 7.317953823628523 15509.0 17.852977369144494 0.0 - - - - - - - 792.5555555555555 31 9 CDC20 cell division cycle 20 homolog (S. cerevisiae) 851 108 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9538.[MT7]-AVAWC[CAM]PWQSNVLATGGGTSDR.3y8_1.heavy 793.054 / 750.338 13803.0 36.12735080718994 43 17 10 6 10 2.8406064333572534 35.20375044768595 0.030597686767578125 3 0.9716935241949243 7.317953823628523 13803.0 20.535483227532495 0.0 - - - - - - - 271.25 27 12 CDC20 cell division cycle 20 homolog (S. cerevisiae) 853 108 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9538.[MT7]-AVAWC[CAM]PWQSNVLATGGGTSDR.3y10_1.heavy 793.054 / 934.459 11166.0 36.12735080718994 43 17 10 6 10 2.8406064333572534 35.20375044768595 0.030597686767578125 3 0.9716935241949243 7.317953823628523 11166.0 24.287778722617617 0.0 - - - - - - - 730.8571428571429 22 7 CDC20 cell division cycle 20 homolog (S. cerevisiae) 855 108 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9538.[MT7]-AVAWC[CAM]PWQSNVLATGGGTSDR.3y9_1.heavy 793.054 / 821.375 11476.0 36.12735080718994 43 17 10 6 10 2.8406064333572534 35.20375044768595 0.030597686767578125 3 0.9716935241949243 7.317953823628523 11476.0 15.129812597835297 0.0 - - - - - - - 797.4285714285714 22 7 CDC20 cell division cycle 20 homolog (S. cerevisiae) 857 109 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9343.[MT7]-C[CAM]LQWTTVIER.2b3_1.heavy 725.386 / 546.283 39360.0 34.069698333740234 50 20 10 10 10 6.384404323023187 15.663168392920221 0.0 3 0.9917216761005351 13.5547372705755 39360.0 55.89335047404789 0.0 - - - - - - - 306.125 78 8 AKT3;AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 859 109 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9343.[MT7]-C[CAM]LQWTTVIER.2y8_1.heavy 725.386 / 1032.55 30051.0 34.069698333740234 50 20 10 10 10 6.384404323023187 15.663168392920221 0.0 3 0.9917216761005351 13.5547372705755 30051.0 98.80381853533902 0.0 - - - - - - - 294.1 60 10 AKT3;AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 861 109 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9343.[MT7]-C[CAM]LQWTTVIER.2y6_1.heavy 725.386 / 718.409 34297.0 34.069698333740234 50 20 10 10 10 6.384404323023187 15.663168392920221 0.0 3 0.9917216761005351 13.5547372705755 34297.0 29.691893632244216 0.0 - - - - - - - 877.875 68 8 AKT3;AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 863 109 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9343.[MT7]-C[CAM]LQWTTVIER.2y7_1.heavy 725.386 / 904.489 50792.0 34.069698333740234 50 20 10 10 10 6.384404323023187 15.663168392920221 0.0 3 0.9917216761005351 13.5547372705755 50792.0 54.40612088752869 0.0 - - - - - - - 871.0833333333334 101 12 AKT3;AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 865 110 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9539.[MT7]-TLELPHVFVNC[CAM]VEC[CAM]FTLR.3y7_1.heavy 793.409 / 924.461 2415.0 41.983299255371094 47 17 10 10 10 3.5761998437852642 27.962643131865363 0.0 3 0.9770731319592638 8.134984751307048 2415.0 5.328571428571429 0.0 - - - - - - - 272.46153846153845 4 13 ORC5 origin recognition complex, subunit 5 867 110 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9539.[MT7]-TLELPHVFVNC[CAM]VEC[CAM]FTLR.3b4_1.heavy 793.409 / 601.368 8050.0 41.983299255371094 47 17 10 10 10 3.5761998437852642 27.962643131865363 0.0 3 0.9770731319592638 8.134984751307048 8050.0 16.495 0.0 - - - - - - - 322.0 16 12 ORC5 origin recognition complex, subunit 5 869 110 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9539.[MT7]-TLELPHVFVNC[CAM]VEC[CAM]FTLR.3b5_1.heavy 793.409 / 698.42 2898.0 41.983299255371094 47 17 10 10 10 3.5761998437852642 27.962643131865363 0.0 3 0.9770731319592638 8.134984751307048 2898.0 2.228571428571429 1.0 - - - - - - - 348.8333333333333 6 12 ORC5 origin recognition complex, subunit 5 871 110 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9539.[MT7]-TLELPHVFVNC[CAM]VEC[CAM]FTLR.3b3_1.heavy 793.409 / 488.284 4508.0 41.983299255371094 47 17 10 10 10 3.5761998437852642 27.962643131865363 0.0 3 0.9770731319592638 8.134984751307048 4508.0 5.4639999999999995 1.0 - - - - - - - 736.0 9 7 ORC5 origin recognition complex, subunit 5 873 111 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9344.[MT7]-DC[CAM]LFRPLNK[MT7].3b4_1.heavy 484.274 / 680.319 N/A 28.412599563598633 45 15 10 10 10 2.0381318957458676 38.86110003631652 0.0 3 0.9598350593090162 6.137257752913406 17958.0 37.54386834433577 1.0 - - - - - - - 316.7142857142857 46 7 CUL1 cullin 1 875 111 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9344.[MT7]-DC[CAM]LFRPLNK[MT7].3b3_1.heavy 484.274 / 533.251 15075.0 28.412599563598633 45 15 10 10 10 2.0381318957458676 38.86110003631652 0.0 3 0.9598350593090162 6.137257752913406 15075.0 47.6410835214447 0.0 - - - - - - - 387.75 30 8 CUL1 cullin 1 877 111 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9344.[MT7]-DC[CAM]LFRPLNK[MT7].3y4_1.heavy 484.274 / 615.395 20840.0 28.412599563598633 45 15 10 10 10 2.0381318957458676 38.86110003631652 0.0 3 0.9598350593090162 6.137257752913406 20840.0 104.06589446589446 0.0 - - - - - - - 258.8333333333333 41 6 CUL1 cullin 1 879 111 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9344.[MT7]-DC[CAM]LFRPLNK[MT7].3y8_2.heavy 484.274 / 596.343 17736.0 28.412599563598633 45 15 10 10 10 2.0381318957458676 38.86110003631652 0.0 3 0.9598350593090162 6.137257752913406 17736.0 38.142919030428054 0.0 - - - - - - - 316.7142857142857 35 7 CUL1 cullin 1 881 112 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9202.[MT7]-SAPGSTPVRR.3b4_1.heavy 391.227 / 457.253 5890.0 14.581999778747559 48 18 10 10 10 4.931597504557013 20.277405020907647 0.0 3 0.9841953292842391 9.803834902576135 5890.0 13.237392030541635 0.0 - - - - - - - 251.72727272727272 11 11 POLE polymerase (DNA directed), epsilon 883 112 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9202.[MT7]-SAPGSTPVRR.3b5_1.heavy 391.227 / 544.285 7738.0 14.581999778747559 48 18 10 10 10 4.931597504557013 20.277405020907647 0.0 3 0.9841953292842391 9.803834902576135 7738.0 48.90683982683983 0.0 - - - - - - - 223.06666666666666 15 15 POLE polymerase (DNA directed), epsilon 885 112 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9202.[MT7]-SAPGSTPVRR.3y4_1.heavy 391.227 / 527.341 10163.0 14.581999778747559 48 18 10 10 10 4.931597504557013 20.277405020907647 0.0 3 0.9841953292842391 9.803834902576135 10163.0 27.80123815999451 0.0 - - - - - - - 248.53846153846155 20 13 POLE polymerase (DNA directed), epsilon 887 112 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9202.[MT7]-SAPGSTPVRR.3y8_2.heavy 391.227 / 435.251 12589.0 14.581999778747559 48 18 10 10 10 4.931597504557013 20.277405020907647 0.0 3 0.9841953292842391 9.803834902576135 12589.0 20.38048179817982 0.0 - - - - - - - 750.375 25 8 POLE polymerase (DNA directed), epsilon 889 113 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9205.[MT7]-ASDDLTALAQIMTIR.3y7_1.heavy 588.321 / 832.471 5783.0 43.96929931640625 40 10 10 10 10 0.7805985127573537 66.66582585960865 0.0 3 0.848569782585803 3.130522451281918 5783.0 44.842174940898346 0.0 - - - - - - - 250.66666666666666 11 9 CDC7 cell division cycle 7 homolog (S. cerevisiae) 891 113 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9205.[MT7]-ASDDLTALAQIMTIR.3y6_1.heavy 588.321 / 761.434 5501.0 43.96929931640625 40 10 10 10 10 0.7805985127573537 66.66582585960865 0.0 3 0.848569782585803 3.130522451281918 5501.0 35.89304964539007 0.0 - - - - - - - 172.33333333333334 11 9 CDC7 cell division cycle 7 homolog (S. cerevisiae) 893 113 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9205.[MT7]-ASDDLTALAQIMTIR.3b4_1.heavy 588.321 / 533.232 4795.0 43.96929931640625 40 10 10 10 10 0.7805985127573537 66.66582585960865 0.0 3 0.848569782585803 3.130522451281918 4795.0 20.517612293144207 0.0 - - - - - - - 221.57142857142858 9 14 CDC7 cell division cycle 7 homolog (S. cerevisiae) 895 113 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9205.[MT7]-ASDDLTALAQIMTIR.3b7_1.heavy 588.321 / 818.401 4231.0 43.96929931640625 40 10 10 10 10 0.7805985127573537 66.66582585960865 0.0 3 0.848569782585803 3.130522451281918 4231.0 13.32671599405409 1.0 - - - - - - - 258.5 9 12 CDC7 cell division cycle 7 homolog (S. cerevisiae) 897 114 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A569.[MT7]-LLEDFLQEGEEPDEDDAYQVLSTLK[MT7].4y4_1.heavy 796.897 / 592.379 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAG2 stromal antigen 2 899 114 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A569.[MT7]-LLEDFLQEGEEPDEDDAYQVLSTLK[MT7].4b4_1.heavy 796.897 / 615.347 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAG2 stromal antigen 2 901 114 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A569.[MT7]-LLEDFLQEGEEPDEDDAYQVLSTLK[MT7].4b5_1.heavy 796.897 / 762.415 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAG2 stromal antigen 2 903 114 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A569.[MT7]-LLEDFLQEGEEPDEDDAYQVLSTLK[MT7].4b6_1.heavy 796.897 / 875.5 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAG2 stromal antigen 2 905 115 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A568.[MT7]-FSLTPAEGDTEEDDGFVDILESDLK[MT7].4y4_1.heavy 758.369 / 606.358 2906.0 44.527299880981445 43 17 10 6 10 2.729821414787169 29.26618539100751 0.038402557373046875 3 0.9770930622396249 8.13853655282323 2906.0 7.683718187550154 0.0 - - - - - - - 203.07692307692307 5 13 CDC25B cell division cycle 25 homolog B (S. pombe) 907 115 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A568.[MT7]-FSLTPAEGDTEEDDGFVDILESDLK[MT7].4y5_1.heavy 758.369 / 735.401 2114.0 44.527299880981445 43 17 10 6 10 2.729821414787169 29.26618539100751 0.038402557373046875 3 0.9770930622396249 8.13853655282323 2114.0 5.681017627103104 0.0 - - - - - - - 252.0 4 11 CDC25B cell division cycle 25 homolog B (S. pombe) 909 115 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A568.[MT7]-FSLTPAEGDTEEDDGFVDILESDLK[MT7].4y6_1.heavy 758.369 / 848.485 1982.0 44.527299880981445 43 17 10 6 10 2.729821414787169 29.26618539100751 0.038402557373046875 3 0.9770930622396249 8.13853655282323 1982.0 5.101971301517445 0.0 - - - - - - - 192.0 3 11 CDC25B cell division cycle 25 homolog B (S. pombe) 911 115 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A568.[MT7]-FSLTPAEGDTEEDDGFVDILESDLK[MT7].4b4_1.heavy 758.369 / 593.341 2510.0 44.527299880981445 43 17 10 6 10 2.729821414787169 29.26618539100751 0.038402557373046875 3 0.9770930622396249 8.13853655282323 2510.0 4.421022727272727 0.0 - - - - - - - 274.15384615384613 5 13 CDC25B cell division cycle 25 homolog B (S. pombe) 913 116 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A567.[MT7]-ARPSIIQDTVTLC[CAM]SYPFIFDAQAK[MT7].4b8_1.heavy 758.156 / 1025.59 7380.0 40.20940017700195 37 11 10 6 10 1.1242818510802455 54.37937270559479 0.037200927734375 3 0.8787793167364115 3.508213312792725 7380.0 20.980914512922464 0.0 - - - - - - - 279.3333333333333 14 6 HERC3 hect domain and RLD 3 915 116 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A567.[MT7]-ARPSIIQDTVTLC[CAM]SYPFIFDAQAK[MT7].4b8_2.heavy 758.156 / 513.297 12243.0 40.20940017700195 37 11 10 6 10 1.1242818510802455 54.37937270559479 0.037200927734375 3 0.8787793167364115 3.508213312792725 12243.0 22.201173821293885 0.0 - - - - - - - 655.7272727272727 24 11 HERC3 hect domain and RLD 3 917 116 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A567.[MT7]-ARPSIIQDTVTLC[CAM]SYPFIFDAQAK[MT7].4y6_1.heavy 758.156 / 823.443 29686.0 40.20940017700195 37 11 10 6 10 1.1242818510802455 54.37937270559479 0.037200927734375 3 0.8787793167364115 3.508213312792725 29686.0 45.700192014258256 0.0 - - - - - - - 654.2 59 10 HERC3 hect domain and RLD 3 919 116 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A567.[MT7]-ARPSIIQDTVTLC[CAM]SYPFIFDAQAK[MT7].4b9_2.heavy 758.156 / 563.82 18113.0 40.20940017700195 37 11 10 6 10 1.1242818510802455 54.37937270559479 0.037200927734375 3 0.8787793167364115 3.508213312792725 18113.0 46.71686018020047 0.0 - - - - - - - 297.8888888888889 36 9 HERC3 hect domain and RLD 3 921 117 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9278.[MT7]-SSSGPK[MT7]PLVR.3y6_1.heavy 439.269 / 853.574 2431.0 18.427900314331055 48 18 10 10 10 2.81037629490578 35.58242367090297 0.0 3 0.9804884809070599 8.820803411210616 2431.0 16.75690922628897 0.0 - - - - - - - 174.0 4 1 AIRE autoimmune regulator 923 117 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9278.[MT7]-SSSGPK[MT7]PLVR.3y4_1.heavy 439.269 / 484.324 18926.0 18.427900314331055 48 18 10 10 10 2.81037629490578 35.58242367090297 0.0 3 0.9804884809070599 8.820803411210616 18926.0 44.13841059932096 0.0 - - - - - - - 303.75 37 4 AIRE autoimmune regulator 925 117 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9278.[MT7]-SSSGPK[MT7]PLVR.3y8_1.heavy 439.269 / 997.628 N/A 18.427900314331055 48 18 10 10 10 2.81037629490578 35.58242367090297 0.0 3 0.9804884809070599 8.820803411210616 0.0 0.0 1.0 - - - - - - - 0.0 0 0 AIRE autoimmune regulator 927 117 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9278.[MT7]-SSSGPK[MT7]PLVR.3y9_2.heavy 439.269 / 542.833 6425.0 18.427900314331055 48 18 10 10 10 2.81037629490578 35.58242367090297 0.0 3 0.9804884809070599 8.820803411210616 6425.0 14.516779091122494 0.0 - - - - - - - 231.66666666666666 12 3 AIRE autoimmune regulator 929 118 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9372.[MT7]-RAATLAQELEK[MT7].3y3_1.heavy 506.634 / 533.341 127338.0 26.114500045776367 43 13 10 10 10 1.248517046680464 48.04122701470082 0.0 3 0.9144926799687411 4.190023132914305 127338.0 647.4429866666667 0.0 - - - - - - - 412.5 254 6 SMC1A structural maintenance of chromosomes 1A 931 118 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9372.[MT7]-RAATLAQELEK[MT7].3b6_1.heavy 506.634 / 728.453 71543.0 26.114500045776367 43 13 10 10 10 1.248517046680464 48.04122701470082 0.0 3 0.9144926799687411 4.190023132914305 71543.0 219.39853333333332 0.0 - - - - - - - 405.0 143 5 SMC1A structural maintenance of chromosomes 1A 933 118 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9372.[MT7]-RAATLAQELEK[MT7].3b4_1.heavy 506.634 / 544.332 35322.0 26.114500045776367 43 13 10 10 10 1.248517046680464 48.04122701470082 0.0 3 0.9144926799687411 4.190023132914305 35322.0 75.3536 0.0 - - - - - - - 400.0 70 9 SMC1A structural maintenance of chromosomes 1A 935 118 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9372.[MT7]-RAATLAQELEK[MT7].3b5_1.heavy 506.634 / 657.416 54445.0 26.114500045776367 43 13 10 10 10 1.248517046680464 48.04122701470082 0.0 3 0.9144926799687411 4.190023132914305 54445.0 101.63066666666666 0.0 - - - - - - - 393.75 108 4 SMC1A structural maintenance of chromosomes 1A 937 119 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A566.[MT7]-DFITALPEQGLDHIAENILSYLDAR.4b5_1.heavy 740.389 / 692.374 5556.0 52.88840103149414 45 15 10 10 10 4.279355743721958 23.368003500691735 0.0 3 0.9533343580438977 5.69062835877124 5556.0 369.3976490486258 0.0 - - - - - - - 53.09090909090909 11 11 FBXW11 F-box and WD repeat domain containing 11 939 119 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A566.[MT7]-DFITALPEQGLDHIAENILSYLDAR.4y7_1.heavy 740.389 / 837.446 2486.0 52.88840103149414 45 15 10 10 10 4.279355743721958 23.368003500691735 0.0 3 0.9533343580438977 5.69062835877124 2486.0 74.00186046511628 0.0 - - - - - - - 48.30769230769231 4 13 FBXW11 F-box and WD repeat domain containing 11 941 119 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A566.[MT7]-DFITALPEQGLDHIAENILSYLDAR.4y6_1.heavy 740.389 / 724.362 6399.0 52.88840103149414 45 15 10 10 10 4.279355743721958 23.368003500691735 0.0 3 0.9533343580438977 5.69062835877124 6399.0 93.88846153846154 0.0 - - - - - - - 63.357142857142854 12 14 FBXW11 F-box and WD repeat domain containing 11 943 119 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A566.[MT7]-DFITALPEQGLDHIAENILSYLDAR.4b3_1.heavy 740.389 / 520.289 1059.0 52.88840103149414 45 15 10 10 10 4.279355743721958 23.368003500691735 0.0 3 0.9533343580438977 5.69062835877124 1059.0 24.43846153846154 0.0 - - - - - - - 44.625 2 16 FBXW11 F-box and WD repeat domain containing 11 945 120 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A565.[MT7]-FVTSC[CAM]SRPPLLGFAYLK[MT7]PPFSIR.4y5_1.heavy 736.165 / 619.356 3344.0 40.58199977874756 44 20 10 6 8 8.260284723651633 12.106120230174449 0.036800384521484375 4 0.9960499389156976 19.629869066124737 3344.0 0.8887707641196013 1.0 - - - - - - - 278.3333333333333 6 9 UBE3B ubiquitin protein ligase E3B 947 120 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A565.[MT7]-FVTSC[CAM]SRPPLLGFAYLK[MT7]PPFSIR.4b14_2.heavy 736.165 / 839.449 2007.0 40.58199977874756 44 20 10 6 8 8.260284723651633 12.106120230174449 0.036800384521484375 4 0.9960499389156976 19.629869066124737 2007.0 0.20003322259136214 2.0 - - - - - - - 522.875 6 8 UBE3B ubiquitin protein ligase E3B 949 120 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A565.[MT7]-FVTSC[CAM]SRPPLLGFAYLK[MT7]PPFSIR.4y7_1.heavy 736.165 / 988.606 2174.0 40.58199977874756 44 20 10 6 8 8.260284723651633 12.106120230174449 0.036800384521484375 4 0.9960499389156976 19.629869066124737 2174.0 0.7582461385151967 2.0 - - - - - - - 716.7142857142857 5 7 UBE3B ubiquitin protein ligase E3B 951 120 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A565.[MT7]-FVTSC[CAM]SRPPLLGFAYLK[MT7]PPFSIR.4y6_1.heavy 736.165 / 716.409 17558.0 40.58199977874756 44 20 10 6 8 8.260284723651633 12.106120230174449 0.036800384521484375 4 0.9960499389156976 19.629869066124737 17558.0 6.169694688709111 1.0 - - - - - - - 250.5 35 2 UBE3B ubiquitin protein ligase E3B 953 121 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A562.[MT7]-GEPETFLPLDYLEVK[MT7]PTDEK[MT7].4y5_1.heavy 688.872 / 733.385 26402.0 39.12379837036133 41 13 10 10 8 1.2188425144883246 50.17638547788536 0.0 4 0.909237676123203 4.065076292379411 26402.0 58.838742857142854 0.0 - - - - - - - 316.25 52 12 SMC1A structural maintenance of chromosomes 1A 955 121 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A562.[MT7]-GEPETFLPLDYLEVK[MT7]PTDEK[MT7].4b4_1.heavy 688.872 / 557.269 9736.0 39.12379837036133 41 13 10 10 8 1.2188425144883246 50.17638547788536 0.0 4 0.909237676123203 4.065076292379411 9736.0 31.420727272727273 1.0 - - - - - - - 742.5 19 8 SMC1A structural maintenance of chromosomes 1A 957 121 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A562.[MT7]-GEPETFLPLDYLEVK[MT7]PTDEK[MT7].4b5_1.heavy 688.872 / 658.316 19637.0 39.12379837036133 41 13 10 10 8 1.2188425144883246 50.17638547788536 0.0 4 0.909237676123203 4.065076292379411 19637.0 35.52511818181818 1.0 - - - - - - - 788.3333333333334 39 9 SMC1A structural maintenance of chromosomes 1A 959 121 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A562.[MT7]-GEPETFLPLDYLEVK[MT7]PTDEK[MT7].4b6_1.heavy 688.872 / 805.385 27062.0 39.12379837036133 41 13 10 10 8 1.2188425144883246 50.17638547788536 0.0 4 0.909237676123203 4.065076292379411 27062.0 192.7142424242424 0.0 - - - - - - - 275.0 54 12 SMC1A structural maintenance of chromosomes 1A 961 122 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 CH10_ECO24.SAGGIVLTGSAAAK.2y7.peptide 601.84 / 605.33 580404.0 24.18790054321289 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 580404.0 423.8089273391237 0.0 - - - - - - - 6535.0 1160 1 963 122 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 CH10_ECO24.SAGGIVLTGSAAAK.2y8.peptide 601.84 / 718.41 714167.0 24.18790054321289 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 714167.0 502.26215859336816 0.0 - - - - - - - 8060.0 1428 1 965 122 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 CH10_ECO24.SAGGIVLTGSAAAK.2y9.peptide 601.84 / 817.48 875344.0 24.18790054321289 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 875344.0 584.9344113593119 0.0 - - - - - - - 8713.0 1750 1 967 123 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9659.[MT7]-LRGLLLRGEAIK[MT7].3y10_2.heavy 543.026 / 607.391 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 969 123 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9659.[MT7]-LRGLLLRGEAIK[MT7].3b6_1.heavy 543.026 / 810.568 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 971 123 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9659.[MT7]-LRGLLLRGEAIK[MT7].3b5_1.heavy 543.026 / 697.484 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 973 123 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9659.[MT7]-LRGLLLRGEAIK[MT7].3y5_1.heavy 543.026 / 661.4 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 975 124 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9374.[MT7]-DSLVDIIGIC[CAM]K[MT7].2y4_1.heavy 760.933 / 621.351 13276.0 37.709999084472656 50 20 10 10 10 16.9457151632174 5.901196794400355 0.0 3 0.9989097773055927 37.37363125192991 13276.0 30.809282700421942 0.0 - - - - - - - 376.7692307692308 26 13 RPA1 replication protein A1, 70kDa 977 124 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9374.[MT7]-DSLVDIIGIC[CAM]K[MT7].2y5_1.heavy 760.933 / 734.435 9799.0 37.709999084472656 50 20 10 10 10 16.9457151632174 5.901196794400355 0.0 3 0.9989097773055927 37.37363125192991 9799.0 18.605696202531643 0.0 - - - - - - - 276.5 19 12 RPA1 replication protein A1, 70kDa 979 124 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9374.[MT7]-DSLVDIIGIC[CAM]K[MT7].2b6_1.heavy 760.933 / 787.432 6796.0 37.709999084472656 50 20 10 10 10 16.9457151632174 5.901196794400355 0.0 3 0.9989097773055927 37.37363125192991 6796.0 11.470042194092827 0.0 - - - - - - - 279.53846153846155 13 13 RPA1 replication protein A1, 70kDa 981 124 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9374.[MT7]-DSLVDIIGIC[CAM]K[MT7].2b5_1.heavy 760.933 / 674.348 16911.0 37.709999084472656 50 20 10 10 10 16.9457151632174 5.901196794400355 0.0 3 0.9989097773055927 37.37363125192991 16911.0 15.981329087927525 0.0 - - - - - - - 744.8571428571429 33 7 RPA1 replication protein A1, 70kDa 983 125 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9660.[MT7]-VYPVPDLLVIADK[MT7].3b6_1.heavy 577.35 / 815.442 4785.0 41.343299865722656 38 14 10 6 8 1.5301280456549191 45.969969119624906 0.03980255126953125 4 0.9468919622849953 5.331399238123992 4785.0 27.207272727272727 1.0 - - - - - - - 256.6666666666667 9 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 985 125 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9660.[MT7]-VYPVPDLLVIADK[MT7].3b4_1.heavy 577.35 / 603.362 5940.0 41.343299865722656 38 14 10 6 8 1.5301280456549191 45.969969119624906 0.03980255126953125 4 0.9468919622849953 5.331399238123992 5940.0 4.140000000000001 1.0 - - - - - - - 256.6666666666667 12 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 987 125 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9660.[MT7]-VYPVPDLLVIADK[MT7].3y4_1.heavy 577.35 / 590.363 7755.0 41.343299865722656 38 14 10 6 8 1.5301280456549191 45.969969119624906 0.03980255126953125 4 0.9468919622849953 5.331399238123992 7755.0 9.97048275862069 0.0 - - - - - - - 288.75 15 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 989 125 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9660.[MT7]-VYPVPDLLVIADK[MT7].3b7_1.heavy 577.35 / 928.526 2805.0 41.343299865722656 38 14 10 6 8 1.5301280456549191 45.969969119624906 0.03980255126953125 4 0.9468919622849953 5.331399238123992 2805.0 0.18888888888888883 2.0 - - - - - - - 288.75 5 4 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 991 126 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9663.[MT7]-QRVPFSVFTTNPC[CAM]R.3y7_1.heavy 618.325 / 895.409 12113.0 31.49649953842163 44 18 10 6 10 10.311726612276704 9.69769697743385 0.03959846496582031 3 0.9845602872212544 9.919331191931786 12113.0 7.933662927439681 0.0 - - - - - - - 277.77777777777777 24 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 993 126 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9663.[MT7]-QRVPFSVFTTNPC[CAM]R.3b6_1.heavy 618.325 / 859.491 3845.0 31.49649953842163 44 18 10 6 10 10.311726612276704 9.69769697743385 0.03959846496582031 3 0.9845602872212544 9.919331191931786 3845.0 2.2420241160511782 1.0 - - - - - - - 721.0 12 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 995 126 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9663.[MT7]-QRVPFSVFTTNPC[CAM]R.3y6_1.heavy 618.325 / 748.341 15766.0 31.49649953842163 44 18 10 6 10 10.311726612276704 9.69769697743385 0.03959846496582031 3 0.9845602872212544 9.919331191931786 15766.0 13.252183708838821 1.0 - - - - - - - 683.6666666666666 31 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 997 126 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9663.[MT7]-QRVPFSVFTTNPC[CAM]R.3y5_1.heavy 618.325 / 647.293 11151.0 31.49649953842163 44 18 10 6 10 10.311726612276704 9.69769697743385 0.03959846496582031 3 0.9845602872212544 9.919331191931786 11151.0 8.036010401188708 1.0 - - - - - - - 346.4 22 5 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 999 127 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9664.[MT7]-FFLEDPTGTVQLDLSK[MT7].3b4_1.heavy 700.049 / 681.373 41383.0 39.51009941101074 42 16 10 6 10 3.7635656369306454 26.57054762609493 0.03839874267578125 3 0.9644533277580687 6.526313787047598 41383.0 85.21613808065857 0.0 - - - - - - - 317.5 82 12 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1001 127 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9664.[MT7]-FFLEDPTGTVQLDLSK[MT7].3b5_1.heavy 700.049 / 796.4 114052.0 39.51009941101074 42 16 10 6 10 3.7635656369306454 26.57054762609493 0.03839874267578125 3 0.9644533277580687 6.526313787047598 114052.0 72.95501536152985 0.0 - - - - - - - 455.5 228 4 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1003 127 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9664.[MT7]-FFLEDPTGTVQLDLSK[MT7].3y4_1.heavy 700.049 / 606.358 77801.0 39.51009941101074 42 16 10 6 10 3.7635656369306454 26.57054762609493 0.03839874267578125 3 0.9644533277580687 6.526313787047598 77801.0 145.27014009310525 0.0 - - - - - - - 744.75 155 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1005 127 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9664.[MT7]-FFLEDPTGTVQLDLSK[MT7].3y5_1.heavy 700.049 / 719.442 56778.0 39.51009941101074 42 16 10 6 10 3.7635656369306454 26.57054762609493 0.03839874267578125 3 0.9644533277580687 6.526313787047598 56778.0 153.27377938033723 0.0 - - - - - - - 349.55555555555554 113 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1007 128 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9666.[MT7]-TLADIIC[CAM]EYPDIHQSSR.3y6_1.heavy 721.36 / 727.385 6583.0 34.99499988555908 37 14 10 3 10 2.679775839464263 37.3165540666983 0.0644989013671875 3 0.9429323840824435 5.141385924277558 6583.0 9.470559823800919 0.0 - - - - - - - 738.4 13 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1009 128 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9666.[MT7]-TLADIIC[CAM]EYPDIHQSSR.3b4_1.heavy 721.36 / 545.305 17500.0 34.99499988555908 37 14 10 3 10 2.679775839464263 37.3165540666983 0.0644989013671875 3 0.9429323840824435 5.141385924277558 17500.0 3.6332179930795845 1.0 - - - - - - - 802.6 35 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1011 128 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9666.[MT7]-TLADIIC[CAM]EYPDIHQSSR.3b5_1.heavy 721.36 / 658.389 15895.0 34.99499988555908 37 14 10 3 10 2.679775839464263 37.3165540666983 0.0644989013671875 3 0.9429323840824435 5.141385924277558 15895.0 12.758715620134925 1.0 - - - - - - - 361.25 31 4 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1013 128 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9666.[MT7]-TLADIIC[CAM]EYPDIHQSSR.3y8_1.heavy 721.36 / 939.464 15734.0 34.99499988555908 37 14 10 3 10 2.679775839464263 37.3165540666983 0.0644989013671875 3 0.9429323840824435 5.141385924277558 15734.0 41.01468383747861 0.0 - - - - - - - 332.64285714285717 31 14 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1015 129 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9667.[MT7]-AYYGNINFFGGPSNTSVK[MT7].3b6_1.heavy 742.047 / 826.422 11741.0 35.5096492767334 46 20 10 6 10 10.25917701015318 9.747370564035808 0.03260040283203125 3 0.9975293373395431 24.823681311867578 11741.0 10.804550503993669 0.0 - - - - - - - 364.8 23 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1017 129 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9667.[MT7]-AYYGNINFFGGPSNTSVK[MT7].3b5_1.heavy 742.047 / 713.338 40141.0 35.5096492767334 46 20 10 6 10 10.25917701015318 9.747370564035808 0.03260040283203125 3 0.9975293373395431 24.823681311867578 40141.0 66.9173078953366 0.0 - - - - - - - 282.1111111111111 80 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1019 129 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9667.[MT7]-AYYGNINFFGGPSNTSVK[MT7].3b7_1.heavy 742.047 / 940.464 16659.0 35.5096492767334 46 20 10 6 10 10.25917701015318 9.747370564035808 0.03260040283203125 3 0.9975293373395431 24.823681311867578 16659.0 57.801043694207664 0.0 - - - - - - - 793.25 33 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1021 129 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9667.[MT7]-AYYGNINFFGGPSNTSVK[MT7].3y9_1.heavy 742.047 / 990.534 16183.0 35.5096492767334 46 20 10 6 10 10.25917701015318 9.747370564035808 0.03260040283203125 3 0.9975293373395431 24.823681311867578 16183.0 37.05771008403361 0.0 - - - - - - - 351.35714285714283 32 14 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1023 130 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9360.[MT7]-FLQVQPVSRK[MT7].3y7_1.heavy 497.308 / 957.596 4290.0 26.2810001373291 46 16 10 10 10 3.2561841226082984 30.710794056663197 0.0 3 0.965429748877582 6.618383940474117 4290.0 37.20530973451327 0.0 - - - - - - - 271.2 8 5 CCNB2 cyclin B2 1025 130 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9360.[MT7]-FLQVQPVSRK[MT7].3b3_1.heavy 497.308 / 533.32 18515.0 26.2810001373291 46 16 10 10 10 3.2561841226082984 30.710794056663197 0.0 3 0.965429748877582 6.618383940474117 18515.0 47.32221993551485 0.0 - - - - - - - 395.5 37 4 CCNB2 cyclin B2 1027 130 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9360.[MT7]-FLQVQPVSRK[MT7].3y9_2.heavy 497.308 / 599.873 13773.0 26.2810001373291 46 16 10 10 10 3.2561841226082984 30.710794056663197 0.0 3 0.965429748877582 6.618383940474117 13773.0 12.201149043735569 0.0 - - - - - - - 339.0 27 8 CCNB2 cyclin B2 1029 130 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9360.[MT7]-FLQVQPVSRK[MT7].3y5_1.heavy 497.308 / 730.469 18740.0 26.2810001373291 46 16 10 10 10 3.2561841226082984 30.710794056663197 0.0 3 0.965429748877582 6.618383940474117 18740.0 9.763966274698898 1.0 - - - - - - - 254.25 38 8 CCNB2 cyclin B2 1031 131 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 TPX_ECO57.DLSDVTLGQFAGK.2y7.peptide 675.85 / 720.4 999240.0 33.41059875488281 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 999240.0 107.80840305340277 0.0 - - - - - - - 279.0 1998 3 1033 131 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 TPX_ECO57.DLSDVTLGQFAGK.2y8.peptide 675.85 / 821.45 2189010.0 33.41059875488281 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 2189010.0 93.90205002690539 0.0 - - - - - - - 167.0 4378 1 1035 131 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 TPX_ECO57.DLSDVTLGQFAGK.2y6.peptide 675.85 / 607.32 1953390.0 33.41059875488281 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1953390.0 83.1096539913606 0.0 - - - - - - - 251.0 3906 2 1037 132 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9368.[MT7]-SYSPTLFAQTVR.2y8_1.heavy 757.41 / 935.531 4714.0 32.1609992980957 46 20 10 6 10 6.936688756790314 14.416100174901194 0.037200927734375 3 0.995176319488381 17.762266127243343 4714.0 15.59779411764706 1.0 - - - - - - - 634.5 75 8 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 1039 132 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9368.[MT7]-SYSPTLFAQTVR.2y9_1.heavy 757.41 / 1032.58 45323.0 32.1609992980957 46 20 10 6 10 6.936688756790314 14.416100174901194 0.037200927734375 3 0.995176319488381 17.762266127243343 45323.0 292.41634791994437 0.0 - - - - - - - 181.0 90 5 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 1041 132 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9368.[MT7]-SYSPTLFAQTVR.2y6_1.heavy 757.41 / 721.399 15410.0 32.1609992980957 46 20 10 6 10 6.936688756790314 14.416100174901194 0.037200927734375 3 0.995176319488381 17.762266127243343 15410.0 31.636423841059603 0.0 - - - - - - - 745.1111111111111 30 9 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 1043 132 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9368.[MT7]-SYSPTLFAQTVR.2y10_1.heavy 757.41 / 1119.62 17585.0 32.1609992980957 46 20 10 6 10 6.936688756790314 14.416100174901194 0.037200927734375 3 0.995176319488381 17.762266127243343 17585.0 115.96737820190859 0.0 - - - - - - - 249.25 35 8 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 1045 133 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9669.[MT7]-FLPLLMTNHPAPNLFGTPR.3b4_1.heavy 760.753 / 615.399 11570.0 41.983299255371094 50 20 10 10 10 16.438544323333065 6.083263702252444 0.0 3 0.9995804402664233 60.24906114569682 11570.0 57.02188139059304 0.0 - - - - - - - 267.7857142857143 23 14 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1047 133 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9669.[MT7]-FLPLLMTNHPAPNLFGTPR.3b5_1.heavy 760.753 / 728.483 8637.0 41.983299255371094 50 20 10 10 10 16.438544323333065 6.083263702252444 0.0 3 0.9995804402664233 60.24906114569682 8637.0 2.993301913272972 1.0 - - - - - - - 253.55555555555554 18 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1049 133 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9669.[MT7]-FLPLLMTNHPAPNLFGTPR.3y8_1.heavy 760.753 / 901.489 14015.0 41.983299255371094 50 20 10 10 10 16.438544323333065 6.083263702252444 0.0 3 0.9995804402664233 60.24906114569682 14015.0 48.14969325153374 0.0 - - - - - - - 222.27272727272728 28 11 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1051 133 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9669.[MT7]-FLPLLMTNHPAPNLFGTPR.3y10_1.heavy 760.753 / 1069.58 36014.0 41.983299255371094 50 20 10 10 10 16.438544323333065 6.083263702252444 0.0 3 0.9995804402664233 60.24906114569682 36014.0 163.44390490797548 0.0 - - - - - - - 326.0 72 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1053 134 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9668.[MT7]-YLTEALQSISELELEDK[MT7].3b6_1.heavy 757.073 / 835.468 25111.0 45.51250076293945 48 18 10 10 10 3.054786046771497 25.336232326329895 0.0 3 0.9850502365467362 10.080978076068675 25111.0 89.17105574382738 0.0 - - - - - - - 211.58333333333334 50 12 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1055 134 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9668.[MT7]-YLTEALQSISELELEDK[MT7].3b4_1.heavy 757.073 / 651.347 23462.0 45.51250076293945 48 18 10 10 10 3.054786046771497 25.336232326329895 0.0 3 0.9850502365467362 10.080978076068675 23462.0 111.32642100771886 0.0 - - - - - - - 203.1 46 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1057 134 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9668.[MT7]-YLTEALQSISELELEDK[MT7].3b5_1.heavy 757.073 / 722.384 59859.0 45.51250076293945 48 18 10 10 10 3.054786046771497 25.336232326329895 0.0 3 0.9850502365467362 10.080978076068675 59859.0 138.05028966138832 0.0 - - - - - - - 682.8461538461538 119 13 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1059 134 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9668.[MT7]-YLTEALQSISELELEDK[MT7].3y4_1.heavy 757.073 / 648.369 23462.0 45.51250076293945 48 18 10 10 10 3.054786046771497 25.336232326329895 0.0 3 0.9850502365467362 10.080978076068675 23462.0 198.93189152275806 0.0 - - - - - - - 610.9090909090909 46 11 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1061 135 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9263.[MT7]-NDGTFIGYK[MT7].2y4_1.heavy 651.85 / 624.384 17018.0 26.656999588012695 47 17 10 10 10 6.603794420018183 15.142809366819245 0.0 3 0.9783760320837518 8.377394300612545 17018.0 14.852232920848145 0.0 - - - - - - - 340.5 34 4 AKT1 v-akt murine thymoma viral oncogene homolog 1 1063 135 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9263.[MT7]-NDGTFIGYK[MT7].2y8_1.heavy 651.85 / 1044.55 9530.0 26.656999588012695 47 17 10 10 10 6.603794420018183 15.142809366819245 0.0 3 0.9783760320837518 8.377394300612545 9530.0 46.60044052863436 0.0 - - - - - - - 312.125 19 8 AKT1 v-akt murine thymoma viral oncogene homolog 1 1065 135 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9263.[MT7]-NDGTFIGYK[MT7].2y3_1.heavy 651.85 / 511.3 48105.0 26.656999588012695 47 17 10 10 10 6.603794420018183 15.142809366819245 0.0 3 0.9783760320837518 8.377394300612545 48105.0 43.137131683537376 0.0 - - - - - - - 408.6 96 5 AKT1 v-akt murine thymoma viral oncogene homolog 1 1067 135 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9263.[MT7]-NDGTFIGYK[MT7].2y7_1.heavy 651.85 / 929.521 19061.0 26.656999588012695 47 17 10 10 10 6.603794420018183 15.142809366819245 0.0 3 0.9783760320837518 8.377394300612545 19061.0 18.590488045994174 0.0 - - - - - - - 302.6666666666667 38 3 AKT1 v-akt murine thymoma viral oncogene homolog 1 1069 136 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9673.[MT7]-THRHELFTPPVIGSHPDESGSK[MT7].4y5_1.heavy 679.857 / 651.343 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1071 136 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9673.[MT7]-THRHELFTPPVIGSHPDESGSK[MT7].4y4_1.heavy 679.857 / 522.3 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1073 136 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9673.[MT7]-THRHELFTPPVIGSHPDESGSK[MT7].4y7_1.heavy 679.857 / 863.423 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1075 136 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9673.[MT7]-THRHELFTPPVIGSHPDESGSK[MT7].4y6_1.heavy 679.857 / 766.37 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1077 137 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9671.[MT7]-NC[CAM]VRFPSSNLAIPNHFVK[MT7].4b11_2.heavy 597.827 / 695.854 9261.0 30.76183319091797 34 13 10 5 6 1.4925544660784777 53.378861120967244 0.041599273681640625 5 0.9077076078213682 4.030707153968366 9261.0 7.129657572403858 1.0 - - - - - - - 745.75 18 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1079 137 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9671.[MT7]-NC[CAM]VRFPSSNLAIPNHFVK[MT7].4b9_1.heavy 597.827 / 1206.58 N/A 30.76183319091797 34 13 10 5 6 1.4925544660784777 53.378861120967244 0.041599273681640625 5 0.9077076078213682 4.030707153968366 412.0 0.3999999999999999 5.0 - - - - - - - 0.0 1 0 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1081 137 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9671.[MT7]-NC[CAM]VRFPSSNLAIPNHFVK[MT7].4b10_2.heavy 597.827 / 660.336 4733.0 30.76183319091797 34 13 10 5 6 1.4925544660784777 53.378861120967244 0.041599273681640625 5 0.9077076078213682 4.030707153968366 4733.0 2.6386245514570796 2.0 - - - - - - - 1286.5 9 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1083 137 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9671.[MT7]-NC[CAM]VRFPSSNLAIPNHFVK[MT7].4b9_2.heavy 597.827 / 603.794 5556.0 30.76183319091797 34 13 10 5 6 1.4925544660784777 53.378861120967244 0.041599273681640625 5 0.9077076078213682 4.030707153968366 5556.0 1.8357767556323794 1.0 - - - - - - - 264.85714285714283 12 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1085 138 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9672.[MT7]-IQYC[CAM]TQEITVFREDLVNK[MT7].3y15_2.heavy 848.784 / 998.518 3519.0 35.35544967651367 43 17 10 6 10 2.122273081049242 32.85159694370448 0.032501220703125 3 0.9742404064722613 7.6728403492223825 3519.0 4.398749999999999 1.0 - - - - - - - 288.0 7 15 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1087 138 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9672.[MT7]-IQYC[CAM]TQEITVFREDLVNK[MT7].3y17_2.heavy 848.784 / 1144.08 5119.0 35.35544967651367 43 17 10 6 10 2.122273081049242 32.85159694370448 0.032501220703125 3 0.9742404064722613 7.6728403492223825 5119.0 55.3491875 0.0 - - - - - - - 253.33333333333334 10 12 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1089 138 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9672.[MT7]-IQYC[CAM]TQEITVFREDLVNK[MT7].3y4_1.heavy 848.784 / 617.41 3679.0 35.35544967651367 43 17 10 6 10 2.122273081049242 32.85159694370448 0.032501220703125 3 0.9742404064722613 7.6728403492223825 3679.0 5.825083333333334 0.0 - - - - - - - 277.89473684210526 7 19 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1091 138 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9672.[MT7]-IQYC[CAM]TQEITVFREDLVNK[MT7].3y16_2.heavy 848.784 / 1080.05 4799.0 35.35544967651367 43 17 10 6 10 2.122273081049242 32.85159694370448 0.032501220703125 3 0.9742404064722613 7.6728403492223825 4799.0 8.498125 1.0 - - - - - - - 200.0 9 16 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1093 139 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9677.[MT7]-VFVVHIPR.3b4_1.heavy 370.902 / 589.383 4911.0 30.567399978637695 44 14 10 10 10 1.2817918381546667 48.72300810523367 0.0 3 0.9477586518613104 5.3758374824920985 4911.0 21.578059514580474 0.0 - - - - - - - 307.0 9 2 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1095 139 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9677.[MT7]-VFVVHIPR.3y4_1.heavy 370.902 / 522.315 4297.0 30.567399978637695 44 14 10 10 10 1.2817918381546667 48.72300810523367 0.0 3 0.9477586518613104 5.3758374824920985 4297.0 37.31053658536585 0.0 - - - - - - - 205.0 8 2 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1097 139 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9677.[MT7]-VFVVHIPR.3b3_1.heavy 370.902 / 490.315 4502.0 30.567399978637695 44 14 10 10 10 1.2817918381546667 48.72300810523367 0.0 3 0.9477586518613104 5.3758374824920985 4502.0 39.52975609756098 0.0 - - - - - - - 273.0 9 3 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1099 139 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9677.[MT7]-VFVVHIPR.3b2_1.heavy 370.902 / 391.246 4502.0 30.567399978637695 44 14 10 10 10 1.2817918381546667 48.72300810523367 0.0 3 0.9477586518613104 5.3758374824920985 4502.0 27.018703594508473 0.0 - - - - - - - 273.0 9 3 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1101 140 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9678.[MT7]-AC[CAM]GPPR.2y4_1.heavy 401.212 / 426.246 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1103 140 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9678.[MT7]-AC[CAM]GPPR.2b3_1.heavy 401.212 / 433.199 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1105 140 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9678.[MT7]-AC[CAM]GPPR.2y5_1.heavy 401.212 / 586.277 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1107 140 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9678.[MT7]-AC[CAM]GPPR.2b4_1.heavy 401.212 / 530.251 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1109 141 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9675.[MT7]-FVFVPGPEDPGFGSILPRPPLAESITNEFR.4b4_1.heavy 858.205 / 637.383 35943.0 44.72817611694336 44 18 10 6 10 4.2149434080195 23.72511094923279 0.0381011962890625 3 0.9807231790459258 8.874513058812786 35943.0 21.707179061228903 0.0 - - - - - - - 140.0 71 2 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1111 141 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9675.[MT7]-FVFVPGPEDPGFGSILPRPPLAESITNEFR.4y21_2.heavy 858.205 / 1149.62 18880.0 44.72817611694336 44 18 10 6 10 4.2149434080195 23.72511094923279 0.0381011962890625 3 0.9807231790459258 8.874513058812786 18880.0 22.947348093818125 0.0 - - - - - - - 681.5 37 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1113 141 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9675.[MT7]-FVFVPGPEDPGFGSILPRPPLAESITNEFR.4y18_2.heavy 858.205 / 999.044 25593.0 44.72817611694336 44 18 10 6 10 4.2149434080195 23.72511094923279 0.0381011962890625 3 0.9807231790459258 8.874513058812786 25593.0 30.280843332574353 0.0 - - - - - - - 839.0 51 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1115 141 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9675.[MT7]-FVFVPGPEDPGFGSILPRPPLAESITNEFR.4b3_1.heavy 858.205 / 538.315 41537.0 44.72817611694336 44 18 10 6 10 4.2149434080195 23.72511094923279 0.0381011962890625 3 0.9807231790459258 8.874513058812786 41537.0 25.40578166712279 0.0 - - - - - - - 373.3333333333333 83 3 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1117 142 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9670.[MT7]-HELFTPPVIGSHPDESGSK[MT7].4y4_1.heavy 581.305 / 522.3 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1119 142 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9670.[MT7]-HELFTPPVIGSHPDESGSK[MT7].4y5_1.heavy 581.305 / 651.343 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1121 142 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9670.[MT7]-HELFTPPVIGSHPDESGSK[MT7].4y7_1.heavy 581.305 / 863.423 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1123 142 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9670.[MT7]-HELFTPPVIGSHPDESGSK[MT7].4b3_1.heavy 581.305 / 524.295 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1125 143 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A543.[MT7]-VVGGFDVLTAMENVESDPK[MT7].3y18_2.heavy 765.731 / 1026.51 N/A N/A - - - - - - - - - 0.0 - - - - - - - PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 1127 143 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A543.[MT7]-VVGGFDVLTAMENVESDPK[MT7].3y1_1.heavy 765.731 / 291.215 N/A N/A - - - - - - - - - 0.0 - - - - - - - PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 1129 143 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A543.[MT7]-VVGGFDVLTAMENVESDPK[MT7].3b5_1.heavy 765.731 / 604.357 N/A N/A - - - - - - - - - 0.0 - - - - - - - PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 1131 143 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A543.[MT7]-VVGGFDVLTAMENVESDPK[MT7].3y2_1.heavy 765.731 / 388.268 N/A N/A - - - - - - - - - 0.0 - - - - - - - PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2 1133 144 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9257.[MT7]-VSWNTPQC[CAM]R.2y4_1.heavy 646.32 / 560.261 35915.0 24.496400833129883 47 17 10 10 10 3.8152481791464443 26.210614697776286 0.0 3 0.9741417162280062 7.658120757577369 35915.0 44.201282272777526 0.0 - - - - - - - 362.6666666666667 71 6 UBOX5 U-box domain containing 5 1135 144 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9257.[MT7]-VSWNTPQC[CAM]R.2y8_1.heavy 646.32 / 1048.46 66171.0 24.496400833129883 47 17 10 10 10 3.8152481791464443 26.210614697776286 0.0 3 0.9741417162280062 7.658120757577369 66171.0 88.52685243644368 0.0 - - - - - - - 311.0 132 7 UBOX5 U-box domain containing 5 1137 144 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9257.[MT7]-VSWNTPQC[CAM]R.2y6_1.heavy 646.32 / 775.352 33303.0 24.496400833129883 47 17 10 10 10 3.8152481791464443 26.210614697776286 0.0 3 0.9741417162280062 7.658120757577369 33303.0 213.27194843403984 0.0 - - - - - - - 277.1818181818182 66 11 UBOX5 U-box domain containing 5 1139 144 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9257.[MT7]-VSWNTPQC[CAM]R.2y7_1.heavy 646.32 / 961.431 20679.0 24.496400833129883 47 17 10 10 10 3.8152481791464443 26.210614697776286 0.0 3 0.9741417162280062 7.658120757577369 20679.0 53.83506891271057 0.0 - - - - - - - 290.3333333333333 41 9 UBOX5 U-box domain containing 5 1141 145 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9391.[MT7]-GVLTSGHQPSSVLR.3y6_1.heavy 527.966 / 658.388 104353.0 23.916200637817383 41 11 10 10 10 1.213659663497381 52.78929875942818 0.0 3 0.8579039788852015 3.234367101005698 104353.0 158.47591325069163 0.0 - - - - - - - 265.0 208 4 PIAS3 protein inhibitor of activated STAT, 3 1143 145 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9391.[MT7]-GVLTSGHQPSSVLR.3b6_1.heavy 527.966 / 659.385 37542.0 23.916200637817383 41 11 10 10 10 1.213659663497381 52.78929875942818 0.0 3 0.8579039788852015 3.234367101005698 37542.0 48.59040730349431 0.0 - - - - - - - 424.0 75 4 PIAS3 protein inhibitor of activated STAT, 3 1145 145 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9391.[MT7]-GVLTSGHQPSSVLR.3y12_2.heavy 527.966 / 641.349 21422.0 23.916200637817383 41 11 10 10 10 1.213659663497381 52.78929875942818 0.0 3 0.8579039788852015 3.234367101005698 21422.0 117.46733490566037 0.0 - - - - - - - 787.4285714285714 42 7 PIAS3 protein inhibitor of activated STAT, 3 1147 145 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9391.[MT7]-GVLTSGHQPSSVLR.3y5_1.heavy 527.966 / 561.336 12090.0 23.916200637817383 41 11 10 10 10 1.213659663497381 52.78929875942818 0.0 3 0.8579039788852015 3.234367101005698 12090.0 55.8860555808808 0.0 - - - - - - - 318.0 24 6 PIAS3 protein inhibitor of activated STAT, 3 1149 146 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A541.[MT7]-ISADGYEVENLISEDLTK[MT7].3y6_1.heavy 762.065 / 836.448 50748.0 40.26572513580322 39 13 10 6 10 1.2222777470779116 57.63974635733753 0.037899017333984375 3 0.9028099191266166 3.926174187190956 50748.0 47.826473347547974 0.0 - - - - - - - 272.0 101 8 UBOX5 U-box domain containing 5 1151 146 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A541.[MT7]-ISADGYEVENLISEDLTK[MT7].3b4_1.heavy 762.065 / 531.289 13901.0 40.26572513580322 39 13 10 6 10 1.2222777470779116 57.63974635733753 0.037899017333984375 3 0.9028099191266166 3.926174187190956 13901.0 17.3036328358209 0.0 - - - - - - - 1196.2857142857142 27 7 UBOX5 U-box domain containing 5 1153 146 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A541.[MT7]-ISADGYEVENLISEDLTK[MT7].3b5_1.heavy 762.065 / 588.311 13901.0 40.26572513580322 39 13 10 6 10 1.2222777470779116 57.63974635733753 0.037899017333984375 3 0.9028099191266166 3.926174187190956 13901.0 11.125686977299878 1.0 - - - - - - - 703.2 27 10 UBOX5 U-box domain containing 5 1155 146 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A541.[MT7]-ISADGYEVENLISEDLTK[MT7].3b7_1.heavy 762.065 / 880.417 42876.0 40.26572513580322 39 13 10 6 10 1.2222777470779116 57.63974635733753 0.037899017333984375 3 0.9028099191266166 3.926174187190956 42876.0 42.66268656716417 0.0 - - - - - - - 669.7142857142857 85 7 UBOX5 U-box domain containing 5 1157 147 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9390.[MT7]-LSSSLQGSAVTLK[MT7].2y4_1.heavy 789.969 / 604.415 3731.0 28.65269947052002 39 18 8 5 8 5.873623932935522 17.025264324340554 0.04360008239746094 4 0.9836498714290027 9.638473797159039 3731.0 0.28580729166666663 3.0 - - - - - - - 339.0 11 11 CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 1159 147 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9390.[MT7]-LSSSLQGSAVTLK[MT7].2b4_1.heavy 789.969 / 519.289 4609.0 28.65269947052002 39 18 8 5 8 5.873623932935522 17.025264324340554 0.04360008239746094 4 0.9836498714290027 9.638473797159039 4609.0 24.19611455774382 0.0 - - - - - - - 250.42857142857142 9 7 CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 1161 147 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9390.[MT7]-LSSSLQGSAVTLK[MT7].2y3_1.heavy 789.969 / 505.347 3731.0 28.65269947052002 39 18 8 5 8 5.873623932935522 17.025264324340554 0.04360008239746094 4 0.9836498714290027 9.638473797159039 3731.0 12.355122376775071 0.0 - - - - - - - 395.0 7 5 CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 1163 147 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9390.[MT7]-LSSSLQGSAVTLK[MT7].2b9_1.heavy 789.969 / 975.523 1317.0 28.65269947052002 39 18 8 5 8 5.873623932935522 17.025264324340554 0.04360008239746094 4 0.9836498714290027 9.638473797159039 1317.0 5.783630136986301 4.0 - - - - - - - 219.0 2 6 CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 1165 148 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A547.[MT7]-DLESIDPEFYNSIVWIK[MT7].3y3_1.heavy 786.082 / 590.378 9213.0 43.65762519836426 40 14 10 6 10 1.7109534232447778 47.35554745409303 0.03929901123046875 3 0.9470591361437092 5.339886077664317 9213.0 49.263958333333335 0.0 - - - - - - - 254.76923076923077 18 13 WWP2 WW domain containing E3 ubiquitin protein ligase 2 1167 148 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A547.[MT7]-DLESIDPEFYNSIVWIK[MT7].3b6_1.heavy 786.082 / 817.406 14683.0 43.65762519836426 40 14 10 6 10 1.7109534232447778 47.35554745409303 0.03929901123046875 3 0.9470591361437092 5.339886077664317 14683.0 64.74795138888888 0.0 - - - - - - - 288.0 29 9 WWP2 WW domain containing E3 ubiquitin protein ligase 2 1169 148 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A547.[MT7]-DLESIDPEFYNSIVWIK[MT7].3b4_1.heavy 786.082 / 589.295 4894.0 43.65762519836426 40 14 10 6 10 1.7109534232447778 47.35554745409303 0.03929901123046875 3 0.9470591361437092 5.339886077664317 4894.0 37.15814814814814 0.0 - - - - - - - 234.0 9 8 WWP2 WW domain containing E3 ubiquitin protein ligase 2 1171 148 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A547.[MT7]-DLESIDPEFYNSIVWIK[MT7].3y4_1.heavy 786.082 / 689.447 11804.0 43.65762519836426 40 14 10 6 10 1.7109534232447778 47.35554745409303 0.03929901123046875 3 0.9470591361437092 5.339886077664317 11804.0 20.84436507936508 0.0 - - - - - - - 288.0 23 9 WWP2 WW domain containing E3 ubiquitin protein ligase 2 1173 149 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A546.[MT7]-VGLTSEILNSFEHEFLSK[MT7].4y5_1.heavy 585.319 / 767.442 4199.0 46.84280014038086 48 18 10 10 10 3.312379416951677 30.189778226562034 0.0 3 0.9837795784495985 9.67703944194722 4199.0 38.34122764227642 0.0 - - - - - - - 166.25 8 8 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1175 149 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A546.[MT7]-VGLTSEILNSFEHEFLSK[MT7].4y4_1.heavy 585.319 / 638.399 6656.0 46.84280014038086 48 18 10 10 10 3.312379416951677 30.189778226562034 0.0 3 0.9837795784495985 9.67703944194722 6656.0 36.689170731707314 0.0 - - - - - - - 223.45454545454547 13 11 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1177 149 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A546.[MT7]-VGLTSEILNSFEHEFLSK[MT7].4b7_1.heavy 585.319 / 844.49 5940.0 46.84280014038086 48 18 10 10 10 3.312379416951677 30.189778226562034 0.0 3 0.9837795784495985 9.67703944194722 5940.0 59.953945480631276 0.0 - - - - - - - 214.9 11 10 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1179 149 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A546.[MT7]-VGLTSEILNSFEHEFLSK[MT7].4b6_1.heavy 585.319 / 731.406 13006.0 46.84280014038086 48 18 10 10 10 3.312379416951677 30.189778226562034 0.0 3 0.9837795784495985 9.67703944194722 13006.0 47.60027477134146 0.0 - - - - - - - 219.35714285714286 26 14 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1181 150 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9395.[MT7]-LIHLEIK[MT7]PAIR.3y7_1.heavy 531.015 / 970.617 5451.0 30.030033747355144 39 13 10 6 10 0.9416645633606779 67.91694139372458 0.03980064392089844 3 0.9024542850314846 3.9188901267259912 5451.0 30.98515285032932 0.0 - - - - - - - 293.6 10 5 MAP2K1;MAP2K2 mitogen-activated protein kinase kinase 1;mitogen-activated protein kinase kinase 2 1183 150 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9395.[MT7]-LIHLEIK[MT7]PAIR.3y6_1.heavy 531.015 / 841.574 3354.0 30.030033747355144 39 13 10 6 10 0.9416645633606779 67.91694139372458 0.03980064392089844 3 0.9024542850314846 3.9188901267259912 3354.0 10.68 1.0 - - - - - - - 279.6666666666667 6 9 MAP2K1;MAP2K2 mitogen-activated protein kinase kinase 1;mitogen-activated protein kinase kinase 2 1185 150 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9395.[MT7]-LIHLEIK[MT7]PAIR.3b3_1.heavy 531.015 / 508.336 N/A 30.030033747355144 39 13 10 6 10 0.9416645633606779 67.91694139372458 0.03980064392089844 3 0.9024542850314846 3.9188901267259912 8805.0 6.6304114490161 0.0 - - - - - - - 419.0 17 2 MAP2K1;MAP2K2 mitogen-activated protein kinase kinase 1;mitogen-activated protein kinase kinase 2 1187 150 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9395.[MT7]-LIHLEIK[MT7]PAIR.3y8_1.heavy 531.015 / 1083.7 839.0 30.030033747355144 39 13 10 6 10 0.9416645633606779 67.91694139372458 0.03980064392089844 3 0.9024542850314846 3.9188901267259912 839.0 5.997624730082964 0.0 - - - - - - - 0.0 1 0 MAP2K1;MAP2K2 mitogen-activated protein kinase kinase 1;mitogen-activated protein kinase kinase 2 1189 151 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A544.[MT7]-SLLRDNVDLLGSLADLYFR.4y5_1.heavy 581.824 / 713.362 N/A N/A - - - - - - - - - 0.0 - - - - - - - ANAPC7 anaphase promoting complex subunit 7 1191 151 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A544.[MT7]-SLLRDNVDLLGSLADLYFR.4b8_1.heavy 581.824 / 1057.58 N/A N/A - - - - - - - - - 0.0 - - - - - - - ANAPC7 anaphase promoting complex subunit 7 1193 151 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A544.[MT7]-SLLRDNVDLLGSLADLYFR.4y4_1.heavy 581.824 / 598.335 N/A N/A - - - - - - - - - 0.0 - - - - - - - ANAPC7 anaphase promoting complex subunit 7 1195 151 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A544.[MT7]-SLLRDNVDLLGSLADLYFR.4b8_2.heavy 581.824 / 529.292 N/A N/A - - - - - - - - - 0.0 - - - - - - - ANAPC7 anaphase promoting complex subunit 7 1197 152 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9639.[MT7]-SGFSFK[MT7].2y4_1.heavy 480.773 / 672.384 2717.0 27.1564998626709 36 20 0 10 6 6.208413479297152 16.107174616101904 0.0 5 0.9942558267789583 16.27573079621609 2717.0 2.254223642798077 5.0 - - - - - - - 263.8333333333333 13 6 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1199 152 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9639.[MT7]-SGFSFK[MT7].2y5_1.heavy 480.773 / 729.405 8831.0 27.1564998626709 36 20 0 10 6 6.208413479297152 16.107174616101904 0.0 5 0.9942558267789583 16.27573079621609 8831.0 23.245132743362834 2.0 - - - - - - - 323.2857142857143 91 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1201 152 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9639.[MT7]-SGFSFK[MT7].2b4_1.heavy 480.773 / 523.263 3170.0 27.1564998626709 36 20 0 10 6 6.208413479297152 16.107174616101904 0.0 5 0.9942558267789583 16.27573079621609 3170.0 7.129230468328723 2.0 - - - - - - - 339.5 7 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1203 152 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9639.[MT7]-SGFSFK[MT7].2y3_1.heavy 480.773 / 525.315 8831.0 27.1564998626709 36 20 0 10 6 6.208413479297152 16.107174616101904 0.0 5 0.9942558267789583 16.27573079621609 8831.0 48.14015501377249 0.0 - - - - - - - 271.4 17 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1205 153 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A548.[MT7]-FLASDVVFATMSLMESPEK[MT7].3y3_1.heavy 797.412 / 517.31 7411.0 50.62812423706055 41 15 10 6 10 1.7058043375780267 40.85111629748264 0.031097412109375 3 0.9547881544625391 5.7821086294341555 7411.0 44.30322151797815 0.0 - - - - - - - 174.58333333333334 14 24 CDC45 cell division cycle 45 homolog (S. cerevisiae) 1207 153 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A548.[MT7]-FLASDVVFATMSLMESPEK[MT7].3b6_1.heavy 797.412 / 777.426 5506.0 50.62812423706055 41 15 10 6 10 1.7058043375780267 40.85111629748264 0.031097412109375 3 0.9547881544625391 5.7821086294341555 5506.0 34.68346456692913 0.0 - - - - - - - 128.8 11 25 CDC45 cell division cycle 45 homolog (S. cerevisiae) 1209 153 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A548.[MT7]-FLASDVVFATMSLMESPEK[MT7].3b5_1.heavy 797.412 / 678.358 6183.0 50.62812423706055 41 15 10 6 10 1.7058043375780267 40.85111629748264 0.031097412109375 3 0.9547881544625391 5.7821086294341555 6183.0 46.42619154841074 0.0 - - - - - - - 137.625 12 24 CDC45 cell division cycle 45 homolog (S. cerevisiae) 1211 153 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A548.[MT7]-FLASDVVFATMSLMESPEK[MT7].3b7_1.heavy 797.412 / 876.495 7454.0 50.62812423706055 41 15 10 6 10 1.7058043375780267 40.85111629748264 0.031097412109375 3 0.9547881544625391 5.7821086294341555 7454.0 72.2121121515216 0.0 - - - - - - - 116.84 14 25 CDC45 cell division cycle 45 homolog (S. cerevisiae) 1213 154 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9642.[MT7]-EDLVNK[MT7].2y4_1.heavy 503.295 / 617.41 6287.0 18.339399337768555 37 12 9 10 6 0.9358598112580738 63.32217705497431 0.0 6 0.8885640666050035 3.6621128298623202 6287.0 3.4014427412082955 1.0 - - - - - - - 323.75 15 4 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1215 154 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9642.[MT7]-EDLVNK[MT7].2b3_1.heavy 503.295 / 502.263 2773.0 18.339399337768555 37 12 9 10 6 0.9358598112580738 63.32217705497431 0.0 6 0.8885640666050035 3.6621128298623202 2773.0 5.995675675675676 4.0 - - - - - - - 296.0 10 5 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1217 154 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9642.[MT7]-EDLVNK[MT7].2y5_1.heavy 503.295 / 732.437 6841.0 18.339399337768555 37 12 9 10 6 0.9358598112580738 63.32217705497431 0.0 6 0.8885640666050035 3.6621128298623202 6841.0 7.395675675675676 0.0 - - - - - - - 290.7142857142857 13 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1219 154 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9642.[MT7]-EDLVNK[MT7].2b4_1.heavy 503.295 / 601.331 924.0 18.339399337768555 37 12 9 10 6 0.9358598112580738 63.32217705497431 0.0 6 0.8885640666050035 3.6621128298623202 924.0 1.186216216216216 36.0 - - - - - - - 259.0 5 5 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1221 155 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9645.[MT7]-YTILHQR.3y3_1.heavy 358.877 / 440.236 138452.0 22.739200592041016 50 20 10 10 10 11.013493787082412 9.07977086410933 0.0 3 0.9934140652691893 15.199000081645691 138452.0 291.8467648810404 0.0 - - - - - - - 620.875 276 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1223 155 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9645.[MT7]-YTILHQR.3y4_1.heavy 358.877 / 553.32 33173.0 22.739200592041016 50 20 10 10 10 11.013493787082412 9.07977086410933 0.0 3 0.9934140652691893 15.199000081645691 33173.0 132.81425439115515 0.0 - - - - - - - 312.14285714285717 66 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1225 155 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9645.[MT7]-YTILHQR.3b3_1.heavy 358.877 / 522.304 64955.0 22.739200592041016 50 20 10 10 10 11.013493787082412 9.07977086410933 0.0 3 0.9934140652691893 15.199000081645691 64955.0 161.3661949685535 0.0 - - - - - - - 720.25 129 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1227 155 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9645.[MT7]-YTILHQR.3b2_1.heavy 358.877 / 409.22 73497.0 22.739200592041016 50 20 10 10 10 11.013493787082412 9.07977086410933 0.0 3 0.9934140652691893 15.199000081645691 73497.0 108.82277991318709 0.0 - - - - - - - 794.7272727272727 146 11 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1229 156 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9640.[MT7]-TVEDSK[MT7].2y4_1.heavy 483.771 / 622.316 7169.0 15.127099990844727 47 17 10 10 10 2.7697548992985173 28.431486779088935 0.0 3 0.9797564749013757 8.659322762986683 7169.0 66.16163297691466 0.0 - - - - - - - 218.35714285714286 14 14 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1231 156 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9640.[MT7]-TVEDSK[MT7].2y5_1.heavy 483.771 / 721.385 11550.0 15.127099990844727 47 17 10 10 10 2.7697548992985173 28.431486779088935 0.0 3 0.9797564749013757 8.659322762986683 11550.0 25.59893059684257 0.0 - - - - - - - 651.8181818181819 23 11 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1233 156 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9640.[MT7]-TVEDSK[MT7].2b4_1.heavy 483.771 / 589.295 18055.0 15.127099990844727 47 17 10 10 10 2.7697548992985173 28.431486779088935 0.0 3 0.9797564749013757 8.659322762986683 18055.0 80.0300438259265 0.0 - - - - - - - 252.4 36 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1235 156 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9640.[MT7]-TVEDSK[MT7].2y2_1.heavy 483.771 / 378.247 38897.0 15.127099990844727 47 17 10 10 10 2.7697548992985173 28.431486779088935 0.0 3 0.9797564749013757 8.659322762986683 38897.0 63.711166001507536 0.0 - - - - - - - 225.9 77 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1237 157 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9641.[MT7]-LRGLLLR.2y5_1.heavy 492.844 / 571.393 4160.0 30.02340030670166 43 17 10 6 10 2.9252515392418608 24.719616877676344 0.03980064392089844 3 0.9793907560280238 8.58188383964686 4160.0 15.200000000000001 0.0 - - - - - - - 346.6666666666667 8 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1239 157 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9641.[MT7]-LRGLLLR.2b4_1.heavy 492.844 / 584.4 2288.0 30.02340030670166 43 17 10 6 10 2.9252515392418608 24.719616877676344 0.03980064392089844 3 0.9793907560280238 8.58188383964686 2288.0 5.903333333333333 0.0 - - - - - - - 277.3333333333333 4 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1241 157 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9641.[MT7]-LRGLLLR.2b6_1.heavy 492.844 / 810.568 5201.0 30.02340030670166 43 17 10 6 10 2.9252515392418608 24.719616877676344 0.03980064392089844 3 0.9793907560280238 8.58188383964686 5201.0 20.170544871794874 0.0 - - - - - - - 312.0 10 4 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1243 157 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9641.[MT7]-LRGLLLR.2b5_1.heavy 492.844 / 697.484 4992.0 30.02340030670166 43 17 10 6 10 2.9252515392418608 24.719616877676344 0.03980064392089844 3 0.9793907560280238 8.58188383964686 4992.0 23.664 0.0 - - - - - - - 286.0 9 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1245 158 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9380.[MT7]-LFELILMEEIR.2b3_1.heavy 775.443 / 534.304 5255.0 48.52224922180176 43 17 10 6 10 3.2398981277844427 24.661591392527257 0.035701751708984375 3 0.97624191345621 7.990851061368175 5255.0 31.145476975073933 0.0 - - - - - - - 190.0 10 15 AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 1247 158 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9380.[MT7]-LFELILMEEIR.2y8_1.heavy 775.443 / 1016.58 3078.0 48.52224922180176 43 17 10 6 10 3.2398981277844427 24.661591392527257 0.035701751708984375 3 0.97624191345621 7.990851061368175 3078.0 37.7568 0.0 - - - - - - - 181.25 6 12 AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 1249 158 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9380.[MT7]-LFELILMEEIR.2b4_1.heavy 775.443 / 647.388 6006.0 48.52224922180176 43 17 10 6 10 3.2398981277844427 24.661591392527257 0.035701751708984375 3 0.97624191345621 7.990851061368175 6006.0 40.035734753661785 0.0 - - - - - - - 610.375 12 8 AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 1251 158 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9380.[MT7]-LFELILMEEIR.2y6_1.heavy 775.443 / 790.413 4204.0 48.52224922180176 43 17 10 6 10 3.2398981277844427 24.661591392527257 0.035701751708984375 3 0.97624191345621 7.990851061368175 4204.0 17.516083263946715 0.0 - - - - - - - 185.0 8 15 AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 1253 159 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A552.[MT7]-LRGWFDAEGQALDGVSISDLK[MT7].4b8_1.heavy 642.094 / 1119.57 1140.0 38.86119842529297 40 10 10 10 10 0.9178468616151881 71.82380209378722 0.0 3 0.8390854649118665 3.0343186850684143 1140.0 5.595092024539877 0.0 - - - - - - - 217.33333333333334 2 12 RPA1 replication protein A1, 70kDa 1255 159 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A552.[MT7]-LRGWFDAEGQALDGVSISDLK[MT7].4y4_1.heavy 642.094 / 606.358 11403.0 38.86119842529297 40 10 10 10 10 0.9178468616151881 71.82380209378722 0.0 3 0.8390854649118665 3.0343186850684143 11403.0 13.615622202890213 0.0 - - - - - - - 863.2 22 10 RPA1 replication protein A1, 70kDa 1257 159 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A552.[MT7]-LRGWFDAEGQALDGVSISDLK[MT7].4b10_2.heavy 642.094 / 652.829 9448.0 38.86119842529297 40 10 10 10 10 0.9178468616151881 71.82380209378722 0.0 3 0.8390854649118665 3.0343186850684143 9448.0 19.326147885050048 0.0 - - - - - - - 288.38461538461536 18 13 RPA1 replication protein A1, 70kDa 1259 159 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A552.[MT7]-LRGWFDAEGQALDGVSISDLK[MT7].4b6_1.heavy 642.094 / 919.491 3258.0 38.86119842529297 40 10 10 10 10 0.9178468616151881 71.82380209378722 0.0 3 0.8390854649118665 3.0343186850684143 3258.0 17.988957055214723 0.0 - - - - - - - 279.42857142857144 6 14 RPA1 replication protein A1, 70kDa 1261 160 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A551.[MT7]-VTNLLQLPQYFDLEIYTTGR.3b6_1.heavy 843.455 / 813.495 8676.0 47.688448905944824 43 17 10 6 10 2.0758533138194895 37.96893067449003 0.037799835205078125 3 0.9749435120236134 7.780208780508549 8676.0 24.30155447938508 0.0 - - - - - - - 236.8 17 10 STAG2 stromal antigen 2 1263 160 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A551.[MT7]-VTNLLQLPQYFDLEIYTTGR.3b4_1.heavy 843.455 / 572.352 12094.0 47.688448905944824 43 17 10 6 10 2.0758533138194895 37.96893067449003 0.037799835205078125 3 0.9749435120236134 7.780208780508549 12094.0 63.74257178124166 0.0 - - - - - - - 663.4285714285714 24 7 STAG2 stromal antigen 2 1265 160 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A551.[MT7]-VTNLLQLPQYFDLEIYTTGR.3b5_1.heavy 843.455 / 685.437 4908.0 47.688448905944824 43 17 10 6 10 2.0758533138194895 37.96893067449003 0.037799835205078125 3 0.9749435120236134 7.780208780508549 4908.0 17.728517110266157 1.0 - - - - - - - 213.07142857142858 9 14 STAG2 stromal antigen 2 1267 160 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A551.[MT7]-VTNLLQLPQYFDLEIYTTGR.3y9_1.heavy 843.455 / 1067.54 3243.0 47.688448905944824 43 17 10 6 10 2.0758533138194895 37.96893067449003 0.037799835205078125 3 0.9749435120236134 7.780208780508549 3243.0 27.162987506789786 0.0 - - - - - - - 168.0 6 12 STAG2 stromal antigen 2 1269 161 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A554.[MT7]-EYSLFPGQVVIMEGINTTGRK[MT7].4b4_1.heavy 657.608 / 637.331 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1271 161 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A554.[MT7]-EYSLFPGQVVIMEGINTTGRK[MT7].4b5_1.heavy 657.608 / 784.4 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1273 161 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A554.[MT7]-EYSLFPGQVVIMEGINTTGRK[MT7].4y6_1.heavy 657.608 / 820.476 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1275 161 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A554.[MT7]-EYSLFPGQVVIMEGINTTGRK[MT7].4b3_1.heavy 657.608 / 524.247 N/A N/A - - - - - - - - - 0.0 - - - - - - - POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1277 162 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A553.[MT7]-K[MT7]LQQTQEYFIIQYQESLR.3y7_1.heavy 868.474 / 923.458 33939.0 35.331074714660645 43 17 10 6 10 4.938452681784418 20.249257498983845 0.032497406005859375 3 0.9781669145618924 8.337031932221933 33939.0 103.3856092436975 0.0 - - - - - - - 387.8888888888889 67 9 STAT5A;STAT5B signal transducer and activator of transcription 5A;signal transducer and activator of transcription 5B 1279 162 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A553.[MT7]-K[MT7]LQQTQEYFIIQYQESLR.3y6_1.heavy 868.474 / 795.399 32829.0 35.331074714660645 43 17 10 6 10 4.938452681784418 20.249257498983845 0.032497406005859375 3 0.9781669145618924 8.337031932221933 32829.0 33.99960027254145 0.0 - - - - - - - 775.3333333333334 65 9 STAT5A;STAT5B signal transducer and activator of transcription 5A;signal transducer and activator of transcription 5B 1281 162 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A553.[MT7]-K[MT7]LQQTQEYFIIQYQESLR.3y8_1.heavy 868.474 / 1036.54 35842.0 35.331074714660645 43 17 10 6 10 4.938452681784418 20.249257498983845 0.032497406005859375 3 0.9781669145618924 8.337031932221933 35842.0 211.3159643263155 0.0 - - - - - - - 297.625 71 8 STAT5A;STAT5B signal transducer and activator of transcription 5A;signal transducer and activator of transcription 5B 1283 162 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A553.[MT7]-K[MT7]LQQTQEYFIIQYQESLR.3b7_2.heavy 868.474 / 572.832 68513.0 35.331074714660645 43 17 10 6 10 4.938452681784418 20.249257498983845 0.032497406005859375 3 0.9781669145618924 8.337031932221933 68513.0 224.0439863099217 0.0 - - - - - - - 370.0 137 3 STAT5A;STAT5B signal transducer and activator of transcription 5A;signal transducer and activator of transcription 5B 1285 163 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9246.[MT7]-AMPLQPSILR.2y8_1.heavy 635.377 / 923.567 83620.0 32.1702995300293 48 18 10 10 10 3.462627027223454 22.781414748986922 0.0 3 0.9887220008639316 11.610136621517363 83620.0 135.63779264214045 0.0 - - - - - - - 323.0 167 5 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 1287 163 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9246.[MT7]-AMPLQPSILR.2y5_1.heavy 635.377 / 585.372 30685.0 32.1702995300293 48 18 10 10 10 3.462627027223454 22.781414748986922 0.0 3 0.9887220008639316 11.610136621517363 30685.0 30.23914610674555 0.0 - - - - - - - 717.8571428571429 61 7 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 1289 163 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9246.[MT7]-AMPLQPSILR.2y9_1.heavy 635.377 / 1054.61 23148.0 32.1702995300293 48 18 10 10 10 3.462627027223454 22.781414748986922 0.0 3 0.9887220008639316 11.610136621517363 23148.0 39.15514406614268 0.0 - - - - - - - 179.0 46 6 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 1291 163 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9246.[MT7]-AMPLQPSILR.2y6_1.heavy 635.377 / 713.43 11843.0 32.1702995300293 48 18 10 10 10 3.462627027223454 22.781414748986922 0.0 3 0.9887220008639316 11.610136621517363 11843.0 6.599442755825734 0.0 - - - - - - - 666.2857142857143 23 7 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 1293 164 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A556.[MT7]-YFDQWSESDQVEFVEHLISR.3b4_1.heavy 886.758 / 698.327 23144.0 44.135226249694824 41 15 10 6 10 1.6876290128818188 40.22479084187391 0.038097381591796875 3 0.9538618473530506 5.7233218221984865 23144.0 43.921771692049745 0.0 - - - - - - - 687.4 46 10 FBXW11 F-box and WD repeat domain containing 11 1295 164 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A556.[MT7]-YFDQWSESDQVEFVEHLISR.3b3_1.heavy 886.758 / 570.268 19918.0 44.135226249694824 41 15 10 6 10 1.6876290128818188 40.22479084187391 0.038097381591796875 3 0.9538618473530506 5.7233218221984865 19918.0 82.0490922005349 0.0 - - - - - - - 280.7142857142857 39 14 FBXW11 F-box and WD repeat domain containing 11 1297 164 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A556.[MT7]-YFDQWSESDQVEFVEHLISR.3y5_1.heavy 886.758 / 625.378 19778.0 44.135226249694824 41 15 10 6 10 1.6876290128818188 40.22479084187391 0.038097381591796875 3 0.9538618473530506 5.7233218221984865 19778.0 40.575751846781245 0.0 - - - - - - - 701.3333333333334 39 9 FBXW11 F-box and WD repeat domain containing 11 1299 164 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A556.[MT7]-YFDQWSESDQVEFVEHLISR.3y9_1.heavy 886.758 / 1129.6 23425.0 44.135226249694824 41 15 10 6 10 1.6876290128818188 40.22479084187391 0.038097381591796875 3 0.9538618473530506 5.7233218221984865 23425.0 35.49242424242425 0.0 - - - - - - - 238.5 46 10 FBXW11 F-box and WD repeat domain containing 11 1301 165 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9383.[MT7]-SSFC[CAM]EFIGVLVR.2y8_1.heavy 779.414 / 932.556 2777.0 43.67727470397949 46 20 10 6 10 17.52936074523527 5.70471459018729 0.03929901123046875 3 0.9985029748868545 31.892872216664006 2777.0 3.989338345002393 0.0 - - - - - - - 318.90909090909093 5 11 STAG2 stromal antigen 2 1303 165 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9383.[MT7]-SSFC[CAM]EFIGVLVR.2y9_1.heavy 779.414 / 1092.59 4093.0 43.67727470397949 46 20 10 6 10 17.52936074523527 5.70471459018729 0.03929901123046875 3 0.9985029748868545 31.892872216664006 4093.0 18.600307517084282 0.0 - - - - - - - 276.1111111111111 8 9 STAG2 stromal antigen 2 1305 165 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9383.[MT7]-SSFC[CAM]EFIGVLVR.2b6_1.heavy 779.414 / 902.383 2631.0 43.67727470397949 46 20 10 6 10 17.52936074523527 5.70471459018729 0.03929901123046875 3 0.9985029748868545 31.892872216664006 2631.0 11.420491445383506 0.0 - - - - - - - 260.92857142857144 5 14 STAG2 stromal antigen 2 1307 165 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9383.[MT7]-SSFC[CAM]EFIGVLVR.2y7_1.heavy 779.414 / 803.514 3654.0 43.67727470397949 46 20 10 6 10 17.52936074523527 5.70471459018729 0.03929901123046875 3 0.9985029748868545 31.892872216664006 3654.0 15.731343963553531 1.0 - - - - - - - 219.16666666666666 7 12 STAG2 stromal antigen 2 1309 166 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A558.[MT7]-RIIPAVASTNAVIAAVC[CAM]ATEVFK[MT7].4b7_1.heavy 673.138 / 865.574 5190.0 42.56269836425781 35 7 10 10 8 0.8199384563011018 80.13709643730496 0.0 4 0.709409980583018 2.231491838556496 5190.0 8.134067751008928 1.0 - - - - - - - 254.07692307692307 10 13 UBA3 ubiquitin-like modifier activating enzyme 3 1311 166 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A558.[MT7]-RIIPAVASTNAVIAAVC[CAM]ATEVFK[MT7].4b11_2.heavy 673.138 / 619.87 41831.0 42.56269836425781 35 7 10 10 8 0.8199384563011018 80.13709643730496 0.0 4 0.709409980583018 2.231491838556496 41831.0 15.038362983750746 0.0 - - - - - - - 472.0 83 2 UBA3 ubiquitin-like modifier activating enzyme 3 1313 166 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A558.[MT7]-RIIPAVASTNAVIAAVC[CAM]ATEVFK[MT7].4b5_1.heavy 673.138 / 695.469 6448.0 42.56269836425781 35 7 10 10 8 0.8199384563011018 80.13709643730496 0.0 4 0.709409980583018 2.231491838556496 6448.0 4.213816836001868 1.0 - - - - - - - 262.1666666666667 16 6 UBA3 ubiquitin-like modifier activating enzyme 3 1315 166 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A558.[MT7]-RIIPAVASTNAVIAAVC[CAM]ATEVFK[MT7].4b6_1.heavy 673.138 / 794.537 5504.0 42.56269836425781 35 7 10 10 8 0.8199384563011018 80.13709643730496 0.0 4 0.709409980583018 2.231491838556496 5504.0 2.061006901223344 1.0 - - - - - - - 332.1111111111111 11 9 UBA3 ubiquitin-like modifier activating enzyme 3 1317 167 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9648.[MT7]-NQVQALK[MT7].2y4_1.heavy 544.837 / 603.395 18471.0 20.191600799560547 50 20 10 10 10 4.236113923172245 18.883454239548332 0.0 3 0.9914425259579989 13.33151120991343 18471.0 46.26161202185792 0.0 - - - - - - - 708.875 36 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1319 167 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9648.[MT7]-NQVQALK[MT7].2y5_1.heavy 544.837 / 702.463 19020.0 20.191600799560547 50 20 10 10 10 4.236113923172245 18.883454239548332 0.0 3 0.9914425259579989 13.33151120991343 19020.0 43.60432016835862 0.0 - - - - - - - 731.5714285714286 38 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1321 167 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9648.[MT7]-NQVQALK[MT7].2b4_1.heavy 544.837 / 614.338 15362.0 20.191600799560547 50 20 10 10 10 4.236113923172245 18.883454239548332 0.0 3 0.9914425259579989 13.33151120991343 15362.0 20.72815436569598 0.0 - - - - - - - 731.6666666666666 30 9 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1323 167 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9648.[MT7]-NQVQALK[MT7].2b5_1.heavy 544.837 / 685.375 14265.0 20.191600799560547 50 20 10 10 10 4.236113923172245 18.883454239548332 0.0 3 0.9914425259579989 13.33151120991343 14265.0 25.191274018736323 0.0 - - - - - - - 292.8 28 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1325 168 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9647.[MT7]-IINAVEK[MT7].2y4_1.heavy 537.842 / 590.363 32610.0 25.095699310302734 48 18 10 10 10 5.202116911553064 19.22294360165495 0.0 3 0.982418632143788 9.29389341410813 32610.0 34.10964833183048 0.0 - - - - - - - 222.0 65 4 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1327 168 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9647.[MT7]-IINAVEK[MT7].2y5_1.heavy 537.842 / 704.406 92728.0 25.095699310302734 48 18 10 10 10 5.202116911553064 19.22294360165495 0.0 3 0.982418632143788 9.29389341410813 92728.0 71.074706700931 0.0 - - - - - - - 277.5 185 4 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1329 168 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9647.[MT7]-IINAVEK[MT7].2y3_1.heavy 537.842 / 519.326 45920.0 25.095699310302734 48 18 10 10 10 5.202116911553064 19.22294360165495 0.0 3 0.982418632143788 9.29389341410813 45920.0 16.424524124469045 0.0 - - - - - - - 277.5 91 4 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1331 168 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9647.[MT7]-IINAVEK[MT7].2y6_1.heavy 537.842 / 817.49 82745.0 25.095699310302734 48 18 10 10 10 5.202116911553064 19.22294360165495 0.0 3 0.982418632143788 9.29389341410813 82745.0 136.17285466322954 0.0 - - - - - - - 388.5 165 4 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1333 169 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9655.[MT7]-GLLLRGEAIK[MT7].3y3_1.heavy 453.297 / 475.336 20703.0 27.82939910888672 50 20 10 10 10 14.51303661469734 6.890356763706507 0.0 3 0.998095697657188 28.2764884983476 20703.0 28.91847619047619 0.0 - - - - - - - 309.375 41 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1335 169 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9655.[MT7]-GLLLRGEAIK[MT7].3b4_1.heavy 453.297 / 541.383 9001.0 27.82939910888672 50 20 10 10 10 14.51303661469734 6.890356763706507 0.0 3 0.998095697657188 28.2764884983476 9001.0 18.002 0.0 - - - - - - - 739.2857142857143 18 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1337 169 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9655.[MT7]-GLLLRGEAIK[MT7].3y9_2.heavy 453.297 / 578.88 7651.0 27.82939910888672 50 20 10 10 10 14.51303661469734 6.890356763706507 0.0 3 0.998095697657188 28.2764884983476 7651.0 8.878961591390182 1.0 - - - - - - - 300.0 16 6 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1339 169 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9655.[MT7]-GLLLRGEAIK[MT7].3y5_1.heavy 453.297 / 661.4 17328.0 27.82939910888672 50 20 10 10 10 14.51303661469734 6.890356763706507 0.0 3 0.998095697657188 28.2764884983476 17328.0 45.82293333333333 0.0 - - - - - - - 347.72727272727275 34 11 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1341 170 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9653.[MT7]-QPLSSNMIER.2y8_1.heavy 659.849 / 949.477 2216.0 25.265950202941895 45 20 10 5 10 5.326271143297276 18.77486093171256 0.040599822998046875 3 0.9985916543260085 32.881888686918394 2216.0 8.75395033860045 0.0 - - - - - - - 304.875 4 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1343 170 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9653.[MT7]-QPLSSNMIER.2y9_1.heavy 659.849 / 1046.53 25479.0 25.265950202941895 45 20 10 5 10 5.326271143297276 18.77486093171256 0.040599822998046875 3 0.9985916543260085 32.881888686918394 25479.0 78.21995485327314 0.0 - - - - - - - 332.5 50 6 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1345 170 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9653.[MT7]-QPLSSNMIER.2y6_1.heavy 659.849 / 749.361 2437.0 25.265950202941895 45 20 10 5 10 5.326271143297276 18.77486093171256 0.040599822998046875 3 0.9985916543260085 32.881888686918394 2437.0 7.304585326498847 1.0 - - - - - - - 266.2 4 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1347 170 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9653.[MT7]-QPLSSNMIER.2y7_1.heavy 659.849 / 836.393 3766.0 25.265950202941895 45 20 10 5 10 5.326271143297276 18.77486093171256 0.040599822998046875 3 0.9985916543260085 32.881888686918394 3766.0 1.3845944416337241 1.0 - - - - - - - 354.6 8 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1349 171 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9654.[MT7]-FVYNSERK[MT7].3y6_1.heavy 444.25 / 940.497 N/A 21.151599884033203 40 10 10 10 10 1.5174705277258516 61.26364010776479 0.0 3 0.8441042818281955 3.0841441225899566 0.0 0.0 4.0 - - - - - - - 0.0 0 0 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1351 171 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9654.[MT7]-FVYNSERK[MT7].3b4_1.heavy 444.25 / 668.352 4706.0 21.151599884033203 40 10 10 10 10 1.5174705277258516 61.26364010776479 0.0 3 0.8441042818281955 3.0841441225899566 4706.0 4.759905998630266 0.0 - - - - - - - 235.0 9 12 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1353 171 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9654.[MT7]-FVYNSERK[MT7].3y7_2.heavy 444.25 / 520.286 28237.0 21.151599884033203 40 10 10 10 10 1.5174705277258516 61.26364010776479 0.0 3 0.8441042818281955 3.0841441225899566 28237.0 19.157850749337477 0.0 - - - - - - - 268.57142857142856 56 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1355 171 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9654.[MT7]-FVYNSERK[MT7].3y5_1.heavy 444.25 / 777.433 5083.0 21.151599884033203 40 10 10 10 10 1.5174705277258516 61.26364010776479 0.0 3 0.8441042818281955 3.0841441225899566 5083.0 12.164960018083693 0.0 - - - - - - - 225.6 10 5 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1357 172 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9651.[MT7]-SRALSAFK[MT7].3y3_1.heavy 389.908 / 509.32 3867.0 23.1200008392334 50 20 10 10 10 6.377452912660242 15.680241213774288 0.0 3 0.9922157299730139 13.978845289835819 3867.0 8.355109341187593 0.0 - - - - - - - 640.0 7 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1359 172 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9651.[MT7]-SRALSAFK[MT7].3b5_1.heavy 389.908 / 659.396 1832.0 23.1200008392334 50 20 10 10 10 6.377452912660242 15.680241213774288 0.0 3 0.9922157299730139 13.978845289835819 1832.0 0.0 0.0 - - - - - - - 262.0 3 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1361 172 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9651.[MT7]-SRALSAFK[MT7].3y4_1.heavy 389.908 / 596.352 3053.0 23.1200008392334 50 20 10 10 10 6.377452912660242 15.680241213774288 0.0 3 0.9922157299730139 13.978845289835819 3053.0 7.847316277741809 0.0 - - - - - - - 305.5 6 2 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1363 172 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9651.[MT7]-SRALSAFK[MT7].3y2_1.heavy 389.908 / 438.283 10787.0 23.1200008392334 50 20 10 10 10 6.377452912660242 15.680241213774288 0.0 3 0.9922157299730139 13.978845289835819 10787.0 46.86874417350437 0.0 - - - - - - - 305.5 21 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1365 173 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9650.[MT7]-VFYPSNK[MT7].2b3_1.heavy 571.826 / 554.31 21130.0 24.419200897216797 48 18 10 10 10 3.2298385733631307 30.961299683740265 0.0 3 0.9831020371067798 9.480510697110649 21130.0 18.202011549711727 0.0 - - - - - - - 725.6666666666666 42 3 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1367 173 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9650.[MT7]-VFYPSNK[MT7].2y4_1.heavy 571.826 / 589.343 69489.0 24.419200897216797 48 18 10 10 10 3.2298385733631307 30.961299683740265 0.0 3 0.9831020371067798 9.480510697110649 69489.0 41.07574245796632 0.0 - - - - - - - 436.0 138 3 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1369 173 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9650.[MT7]-VFYPSNK[MT7].2y5_1.heavy 571.826 / 752.406 18080.0 24.419200897216797 48 18 10 10 10 3.2298385733631307 30.961299683740265 0.0 3 0.9831020371067798 9.480510697110649 18080.0 49.90709728139937 0.0 - - - - - - - 327.0 36 6 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1371 173 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9650.[MT7]-VFYPSNK[MT7].2y6_1.heavy 571.826 / 899.474 21565.0 24.419200897216797 48 18 10 10 10 3.2298385733631307 30.961299683740265 0.0 3 0.9831020371067798 9.480510697110649 21565.0 52.74782703867868 0.0 - - - - - - - 290.6666666666667 43 12 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 1373 174 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A528.[MT7]-LEDVAQLQALLQIWPK[MT7].3b6_1.heavy 718.424 / 800.427 19576.0 46.97214889526367 39 15 10 6 8 3.2671875835163844 30.607364114787906 0.0364990234375 4 0.9522114080580344 5.622835396730936 19576.0 90.48400908307885 0.0 - - - - - - - 289.5625 39 16 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 1375 174 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A528.[MT7]-LEDVAQLQALLQIWPK[MT7].3b4_1.heavy 718.424 / 601.331 6809.0 46.97214889526367 39 15 10 6 8 3.2671875835163844 30.607364114787906 0.0364990234375 4 0.9522114080580344 5.622835396730936 6809.0 12.955813953488374 1.0 - - - - - - - 220.8 15 15 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 1377 174 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A528.[MT7]-LEDVAQLQALLQIWPK[MT7].3b5_1.heavy 718.424 / 672.369 10781.0 46.97214889526367 39 15 10 6 8 3.2671875835163844 30.607364114787906 0.0364990234375 4 0.9522114080580344 5.622835396730936 10781.0 31.493641430181334 0.0 - - - - - - - 327.8666666666667 21 15 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 1379 174 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A528.[MT7]-LEDVAQLQALLQIWPK[MT7].3b3_1.heavy 718.424 / 502.263 6431.0 46.97214889526367 39 15 10 6 8 3.2671875835163844 30.607364114787906 0.0364990234375 4 0.9522114080580344 5.622835396730936 6431.0 24.5653529468182 0.0 - - - - - - - 214.6 12 15 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 1381 175 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A529.[MT7]-IYDITNVLEGIQLIRK[MT7].3y7_1.heavy 726.103 / 971.648 31392.0 43.64780044555664 47 17 10 10 10 4.402029319723709 22.716795536081634 0.0 3 0.9737072254611892 7.59430392089379 31392.0 98.666074392208 0.0 - - - - - - - 220.9 62 10 E2F2 E2F transcription factor 2 1383 175 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A529.[MT7]-IYDITNVLEGIQLIRK[MT7].3b3_1.heavy 726.103 / 536.284 84301.0 43.64780044555664 47 17 10 10 10 4.402029319723709 22.716795536081634 0.0 3 0.9737072254611892 7.59430392089379 84301.0 149.8728037218428 0.0 - - - - - - - 700.25 168 8 E2F2 E2F transcription factor 2 1385 175 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A529.[MT7]-IYDITNVLEGIQLIRK[MT7].3y8_1.heavy 726.103 / 1100.69 24612.0 43.64780044555664 47 17 10 10 10 4.402029319723709 22.716795536081634 0.0 3 0.9737072254611892 7.59430392089379 24612.0 113.40243753190902 0.0 - - - - - - - 258.0 49 8 E2F2 E2F transcription factor 2 1387 175 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A529.[MT7]-IYDITNVLEGIQLIRK[MT7].3y9_1.heavy 726.103 / 1213.77 24318.0 43.64780044555664 47 17 10 10 10 4.402029319723709 22.716795536081634 0.0 3 0.9737072254611892 7.59430392089379 24318.0 198.1605334367125 0.0 - - - - - - - 239.25 48 8 E2F2 E2F transcription factor 2 1389 176 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A527.[MT7]-RITSVQPPTGLQEWLK[MT7].3y10_2.heavy 714.416 / 656.873 58306.0 34.822898864746094 42 12 10 10 10 1.290716235694384 51.835332188913945 0.0 3 0.8932590463366402 3.743310430947908 58306.0 30.962655458478146 0.0 - - - - - - - 399.0 116 4 FBXW7 F-box and WD repeat domain containing 7 1391 176 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A527.[MT7]-RITSVQPPTGLQEWLK[MT7].3b6_1.heavy 714.416 / 829.501 57827.0 34.822898864746094 42 12 10 10 10 1.290716235694384 51.835332188913945 0.0 3 0.8932590463366402 3.743310430947908 57827.0 52.36173074343025 0.0 - - - - - - - 479.0 115 2 FBXW7 F-box and WD repeat domain containing 7 1393 176 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A527.[MT7]-RITSVQPPTGLQEWLK[MT7].3b5_1.heavy 714.416 / 701.443 18690.0 34.822898864746094 42 12 10 10 10 1.290716235694384 51.835332188913945 0.0 3 0.8932590463366402 3.743310430947908 18690.0 24.095826248843167 0.0 - - - - - - - 778.625 37 8 FBXW7 F-box and WD repeat domain containing 7 1395 176 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A527.[MT7]-RITSVQPPTGLQEWLK[MT7].3y4_1.heavy 714.416 / 719.421 15974.0 34.822898864746094 42 12 10 10 10 1.290716235694384 51.835332188913945 0.0 3 0.8932590463366402 3.743310430947908 15974.0 20.006576363772986 0.0 - - - - - - - 766.7 31 10 FBXW7 F-box and WD repeat domain containing 7 1397 177 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A523.[MT7]-ELDGFGLYLYGVVLRK[MT7].4b4_1.heavy 533.31 / 559.284 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC23 cell division cycle 23 homolog (S. cerevisiae) 1399 177 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A523.[MT7]-ELDGFGLYLYGVVLRK[MT7].4b5_1.heavy 533.31 / 706.353 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC23 cell division cycle 23 homolog (S. cerevisiae) 1401 177 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A523.[MT7]-ELDGFGLYLYGVVLRK[MT7].4b3_1.heavy 533.31 / 502.263 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC23 cell division cycle 23 homolog (S. cerevisiae) 1403 177 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A523.[MT7]-ELDGFGLYLYGVVLRK[MT7].4b6_1.heavy 533.31 / 763.374 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC23 cell division cycle 23 homolog (S. cerevisiae) 1405 178 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A520.[MT7]-LVTGTVLAVFGSVRDDGK[MT7].4y9_2.heavy 531.308 / 562.794 17797.0 40.74779987335205 41 15 10 6 10 2.5162546979498956 33.397661223080185 0.036800384521484375 3 0.957773822507586 5.984547229615522 17797.0 71.64982854598084 0.0 - - - - - - - 261.2857142857143 35 14 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 1407 178 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A520.[MT7]-LVTGTVLAVFGSVRDDGK[MT7].4y11_2.heavy 531.308 / 647.847 9813.0 40.74779987335205 41 15 10 6 10 2.5162546979498956 33.397661223080185 0.036800384521484375 3 0.957773822507586 5.984547229615522 9813.0 73.46185660477582 0.0 - - - - - - - 356.42857142857144 19 7 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 1409 178 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A520.[MT7]-LVTGTVLAVFGSVRDDGK[MT7].4b5_1.heavy 531.308 / 616.379 6819.0 40.74779987335205 41 15 10 6 10 2.5162546979498956 33.397661223080185 0.036800384521484375 3 0.957773822507586 5.984547229615522 6819.0 25.60762446657184 0.0 - - - - - - - 297.0 13 14 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 1411 178 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A520.[MT7]-LVTGTVLAVFGSVRDDGK[MT7].4b6_1.heavy 531.308 / 715.447 6986.0 40.74779987335205 41 15 10 6 10 2.5162546979498956 33.397661223080185 0.036800384521484375 3 0.957773822507586 5.984547229615522 6986.0 51.22265060240964 0.0 - - - - - - - 241.8181818181818 13 11 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 1413 179 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A537.[MT7]-DDDAVPPGMESLISAPLVK[MT7].3y6_1.heavy 748.068 / 758.489 15063.0 38.53824996948242 36 10 10 6 10 0.6760264578418677 81.5633891407559 0.03730010986328125 3 0.846532082255296 3.1091104317509037 15063.0 14.316132197860004 0.0 - - - - - - - 491.0 30 2 CDC25B cell division cycle 25 homolog B (S. pombe) 1415 179 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A537.[MT7]-DDDAVPPGMESLISAPLVK[MT7].3b4_1.heavy 748.068 / 561.227 19975.0 38.53824996948242 36 10 10 6 10 0.6760264578418677 81.5633891407559 0.03730010986328125 3 0.846532082255296 3.1091104317509037 19975.0 13.22421127100538 0.0 - - - - - - - 286.25 39 4 CDC25B cell division cycle 25 homolog B (S. pombe) 1417 179 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A537.[MT7]-DDDAVPPGMESLISAPLVK[MT7].3b5_1.heavy 748.068 / 660.296 40605.0 38.53824996948242 36 10 10 6 10 0.6760264578418677 81.5633891407559 0.03730010986328125 3 0.846532082255296 3.1091104317509037 40605.0 17.079320126580615 0.0 - - - - - - - 409.0 81 2 CDC25B cell division cycle 25 homolog B (S. pombe) 1419 179 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A537.[MT7]-DDDAVPPGMESLISAPLVK[MT7].3y4_1.heavy 748.068 / 600.42 31109.0 38.53824996948242 36 10 10 6 10 0.6760264578418677 81.5633891407559 0.03730010986328125 3 0.846532082255296 3.1091104317509037 31109.0 15.417138859396147 0.0 - - - - - - - 409.0 62 2 CDC25B cell division cycle 25 homolog B (S. pombe) 1421 180 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A538.[MT7]-DSSVSLQDAEWYWGDISR.3y7_1.heavy 753.354 / 896.426 3677.0 39.51009941101074 27 13 0 6 8 1.156513103480587 50.05364106047779 0.03839874267578125 4 0.9115565119591865 4.118844139641459 3677.0 10.014771075993576 0.0 - - - - - - - 259.77777777777777 7 9 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 1423 180 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A538.[MT7]-DSSVSLQDAEWYWGDISR.3b10_1.heavy 753.354 / 1176.55 1337.0 39.51009941101074 27 13 0 6 8 1.156513103480587 50.05364106047779 0.03839874267578125 4 0.9115565119591865 4.118844139641459 1337.0 9.527125748502995 0.0 - - - - - - - 264.4166666666667 2 12 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 1425 180 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A538.[MT7]-DSSVSLQDAEWYWGDISR.3b5_1.heavy 753.354 / 620.301 3009.0 39.51009941101074 27 13 0 6 8 1.156513103480587 50.05364106047779 0.03839874267578125 4 0.9115565119591865 4.118844139641459 3009.0 4.204191616766467 0.0 - - - - - - - 278.3333333333333 6 15 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 1427 180 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A538.[MT7]-DSSVSLQDAEWYWGDISR.3y5_1.heavy 753.354 / 547.284 4011.0 39.51009941101074 27 13 0 6 8 1.156513103480587 50.05364106047779 0.03839874267578125 4 0.9115565119591865 4.118844139641459 4011.0 9.006287425149699 1.0 - - - - - - - 668.5714285714286 69 7 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 1429 181 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A534.[MT7]-TFLIPVLFNNYITAALK[MT7].3b6_1.heavy 742.776 / 815.515 14723.0 52.27299880981445 45 15 10 10 10 1.9047173955978347 44.96795369366015 0.0 3 0.9528617849466483 5.661804593802057 14723.0 279.23814377289375 0.0 - - - - - - - 148.38888888888889 29 18 HERC3 hect domain and RLD 3 1431 181 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A534.[MT7]-TFLIPVLFNNYITAALK[MT7].3b4_1.heavy 742.776 / 619.394 63734.0 52.27299880981445 45 15 10 10 10 1.9047173955978347 44.96795369366015 0.0 3 0.9528617849466483 5.661804593802057 63734.0 1230.1597928428857 0.0 - - - - - - - 158.8 127 10 HERC3 hect domain and RLD 3 1433 181 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A534.[MT7]-TFLIPVLFNNYITAALK[MT7].3b3_1.heavy 742.776 / 506.31 42666.0 52.27299880981445 45 15 10 10 10 1.9047173955978347 44.96795369366015 0.0 3 0.9528617849466483 5.661804593802057 42666.0 810.7745873586844 0.0 - - - - - - - 181.64705882352942 85 17 HERC3 hect domain and RLD 3 1435 181 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A534.[MT7]-TFLIPVLFNNYITAALK[MT7].3y5_1.heavy 742.776 / 647.421 40801.0 52.27299880981445 45 15 10 10 10 1.9047173955978347 44.96795369366015 0.0 3 0.9528617849466483 5.661804593802057 40801.0 1453.9103022658878 0.0 - - - - - - - 184.15384615384616 81 13 HERC3 hect domain and RLD 3 1437 182 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A535.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].3b6_1.heavy 744.739 / 799.468 92734.0 41.64720153808594 46 16 10 10 10 3.3623774376196436 23.424467138723195 0.0 3 0.9622347649093651 6.330528106449649 92734.0 323.88224558050644 0.0 - - - - - - - 289.8 185 5 FBXW7 F-box and WD repeat domain containing 7 1439 182 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A535.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].3b5_1.heavy 744.739 / 670.426 48299.0 41.64720153808594 46 16 10 10 10 3.3623774376196436 23.424467138723195 0.0 3 0.9622347649093651 6.330528106449649 48299.0 89.14101153504879 0.0 - - - - - - - 322.0 96 7 FBXW7 F-box and WD repeat domain containing 7 1441 182 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A535.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].3b7_1.heavy 744.739 / 912.552 50714.0 41.64720153808594 46 16 10 10 10 3.3623774376196436 23.424467138723195 0.0 3 0.9622347649093651 6.330528106449649 50714.0 175.34654244306415 0.0 - - - - - - - 276.0 101 7 FBXW7 F-box and WD repeat domain containing 7 1443 182 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A535.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].3y5_1.heavy 744.739 / 716.442 94183.0 41.64720153808594 46 16 10 10 10 3.3623774376196436 23.424467138723195 0.0 3 0.9622347649093651 6.330528106449649 94183.0 221.73814847678202 0.0 - - - - - - - 805.0 188 7 FBXW7 F-box and WD repeat domain containing 7 1445 183 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A536.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].4y5_1.heavy 558.806 / 716.442 N/A N/A - - - - - - - - - 0.0 - - - - - - - FBXW7 F-box and WD repeat domain containing 7 1447 183 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A536.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].4b4_1.heavy 558.806 / 555.399 N/A N/A - - - - - - - - - 0.0 - - - - - - - FBXW7 F-box and WD repeat domain containing 7 1449 183 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A536.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].4b5_1.heavy 558.806 / 670.426 N/A N/A - - - - - - - - - 0.0 - - - - - - - FBXW7 F-box and WD repeat domain containing 7 1451 183 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A536.[MT7]-LLALDELIDSC[CAM]EPTQVK[MT7].4b6_1.heavy 558.806 / 799.468 N/A N/A - - - - - - - - - 0.0 - - - - - - - FBXW7 F-box and WD repeat domain containing 7 1453 184 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A531.[MT7]-MDLADLLTQNPELFRK[MT7].4y4_1.heavy 548.805 / 707.469 1495.0 40.887399673461914 46 20 10 6 10 8.115248112389123 12.322482149046714 0.037403106689453125 3 0.9935916998158675 15.408442749591162 1495.0 10.221837349397589 0.0 - - - - - - - 235.16666666666666 2 12 UBE2L6 ubiquitin-conjugating enzyme E2L 6 1455 184 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A531.[MT7]-MDLADLLTQNPELFRK[MT7].4b5_1.heavy 548.805 / 690.325 23255.0 40.887399673461914 46 20 10 6 10 8.115248112389123 12.322482149046714 0.037403106689453125 3 0.9935916998158675 15.408442749591162 23255.0 169.50933734939758 0.0 - - - - - - - 249.0 46 10 UBE2L6 ubiquitin-conjugating enzyme E2L 6 1457 184 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A531.[MT7]-MDLADLLTQNPELFRK[MT7].4y6_1.heavy 548.805 / 933.564 4817.0 40.887399673461914 46 20 10 6 10 8.115248112389123 12.322482149046714 0.037403106689453125 3 0.9935916998158675 15.408442749591162 4817.0 16.395210843373494 0.0 - - - - - - - 276.6666666666667 9 6 UBE2L6 ubiquitin-conjugating enzyme E2L 6 1459 184 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A531.[MT7]-MDLADLLTQNPELFRK[MT7].4b3_1.heavy 548.805 / 504.261 5315.0 40.887399673461914 46 20 10 6 10 8.115248112389123 12.322482149046714 0.037403106689453125 3 0.9935916998158675 15.408442749591162 5315.0 11.73995983935743 0.0 - - - - - - - 332.0 10 10 UBE2L6 ubiquitin-conjugating enzyme E2L 6 1461 185 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A532.[MT7]-GSSSQGPSQTSTPTDVTAIHL.3b9_1.heavy 739.037 / 960.45 3090.0 31.166800498962402 45 20 10 5 10 5.504495355210676 18.166969639703265 0.04120063781738281 3 0.9939328630556271 15.836188013912423 3090.0 19.13238341968912 2.0 - - - - - - - 217.125 8 8 CCND3 cyclin D3 1463 185 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A532.[MT7]-GSSSQGPSQTSTPTDVTAIHL.3b6_1.heavy 739.037 / 648.307 15062.0 31.166800498962402 45 20 10 5 10 5.504495355210676 18.166969639703265 0.04120063781738281 3 0.9939328630556271 15.836188013912423 15062.0 15.375830821331547 0.0 - - - - - - - 747.875 30 8 CCND3 cyclin D3 1465 185 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A532.[MT7]-GSSSQGPSQTSTPTDVTAIHL.3b5_1.heavy 739.037 / 591.286 11007.0 31.166800498962402 45 20 10 5 10 5.504495355210676 18.166969639703265 0.04120063781738281 3 0.9939328630556271 15.836188013912423 11007.0 18.146516065242054 0.0 - - - - - - - 810.6 22 10 CCND3 cyclin D3 1467 185 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A532.[MT7]-GSSSQGPSQTSTPTDVTAIHL.3y9_1.heavy 739.037 / 966.526 6758.0 31.166800498962402 45 20 10 5 10 5.504495355210676 18.166969639703265 0.04120063781738281 3 0.9939328630556271 15.836188013912423 6758.0 14.818513786377094 0.0 - - - - - - - 250.9 13 10 CCND3 cyclin D3 1469 186 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A506.[MT7]-AQATQLLEGLVQELQK[MT7].3b9_1.heavy 686.4 / 1056.58 153191.0 45.66230010986328 50 20 10 10 10 7.117568559449839 14.04974172917972 0.0 3 0.9915427796713093 13.410408107020018 153191.0 687.1008696838697 0.0 - - - - - - - 264.125 306 8 STAT5A signal transducer and activator of transcription 5A 1471 186 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A506.[MT7]-AQATQLLEGLVQELQK[MT7].3y3_1.heavy 686.4 / 532.357 218156.0 45.66230010986328 50 20 10 10 10 7.117568559449839 14.04974172917972 0.0 3 0.9915427796713093 13.410408107020018 218156.0 371.62794038812797 0.0 - - - - - - - 251.42857142857142 436 7 STAT5A signal transducer and activator of transcription 5A 1473 186 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A506.[MT7]-AQATQLLEGLVQELQK[MT7].3b6_1.heavy 686.4 / 757.432 412581.0 45.66230010986328 50 20 10 10 10 7.117568559449839 14.04974172917972 0.0 3 0.9915427796713093 13.410408107020018 412581.0 1236.4445044371066 0.0 - - - - - - - 205.25 825 8 STAT5A signal transducer and activator of transcription 5A 1475 186 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A506.[MT7]-AQATQLLEGLVQELQK[MT7].3b5_1.heavy 686.4 / 644.348 366295.0 45.66230010986328 50 20 10 10 10 7.117568559449839 14.04974172917972 0.0 3 0.9915427796713093 13.410408107020018 366295.0 525.2080268261257 0.0 - - - - - - - 234.85714285714286 732 7 STAT5A signal transducer and activator of transcription 5A 1477 187 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A507.[MT7]-VLLFVASDVDALC[CAM]AC[CAM]K[MT7].3y3_1.heavy 690.372 / 522.283 55605.0 42.56269836425781 44 14 10 10 10 1.789961047367308 45.53838486824772 0.0 3 0.9424645806243727 5.120237816153939 55605.0 103.46910720386549 0.0 - - - - - - - 385.0 111 2 CDC45 cell division cycle 45 homolog (S. cerevisiae) 1479 187 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A507.[MT7]-VLLFVASDVDALC[CAM]AC[CAM]K[MT7].3b4_1.heavy 690.372 / 617.414 56683.0 42.56269836425781 44 14 10 10 10 1.789961047367308 45.53838486824772 0.0 3 0.9424645806243727 5.120237816153939 56683.0 82.099678059958 0.0 - - - - - - - 748.0 113 7 CDC45 cell division cycle 45 homolog (S. cerevisiae) 1481 187 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A507.[MT7]-VLLFVASDVDALC[CAM]AC[CAM]K[MT7].3b5_1.heavy 690.372 / 716.483 48365.0 42.56269836425781 44 14 10 10 10 1.789961047367308 45.53838486824772 0.0 3 0.9424645806243727 5.120237816153939 48365.0 107.86560493086071 0.0 - - - - - - - 308.0 96 7 CDC45 cell division cycle 45 homolog (S. cerevisiae) 1483 187 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A507.[MT7]-VLLFVASDVDALC[CAM]AC[CAM]K[MT7].3y4_1.heavy 690.372 / 682.313 91340.0 42.56269836425781 44 14 10 10 10 1.789961047367308 45.53838486824772 0.0 3 0.9424645806243727 5.120237816153939 91340.0 110.91004714885045 0.0 - - - - - - - 346.5 182 4 CDC45 cell division cycle 45 homolog (S. cerevisiae) 1485 188 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A505.[MT7]-AQATQLLEGLVQELQK[MT7].4y4_1.heavy 515.052 / 661.4 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAT5A signal transducer and activator of transcription 5A 1487 188 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A505.[MT7]-AQATQLLEGLVQELQK[MT7].4b4_1.heavy 515.052 / 516.29 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAT5A signal transducer and activator of transcription 5A 1489 188 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A505.[MT7]-AQATQLLEGLVQELQK[MT7].4b5_1.heavy 515.052 / 644.348 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAT5A signal transducer and activator of transcription 5A 1491 188 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A505.[MT7]-AQATQLLEGLVQELQK[MT7].4b6_1.heavy 515.052 / 757.432 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAT5A signal transducer and activator of transcription 5A 1493 189 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9296.[MT7]-LMTIYLSTK[MT7].2y4_1.heavy 679.404 / 592.379 14688.0 35.40420150756836 48 20 10 10 8 6.1865058811277605 16.16421319586148 0.0 4 0.9923276431410266 14.080559404458313 14688.0 17.908180257807718 0.0 - - - - - - - 803.1666666666666 29 12 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 1495 189 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9296.[MT7]-LMTIYLSTK[MT7].2y8_1.heavy 679.404 / 1100.61 15004.0 35.40420150756836 48 20 10 10 8 6.1865058811277605 16.16421319586148 0.0 4 0.9923276431410266 14.080559404458313 15004.0 21.52918091199815 1.0 - - - - - - - 1331.0 36 7 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 1497 189 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9296.[MT7]-LMTIYLSTK[MT7].2y5_1.heavy 679.404 / 755.442 34903.0 35.40420150756836 48 20 10 10 8 6.1865058811277605 16.16421319586148 0.0 4 0.9923276431410266 14.080559404458313 34903.0 21.715641959365644 0.0 - - - - - - - 1263.2857142857142 69 7 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 1499 189 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9296.[MT7]-LMTIYLSTK[MT7].2y7_1.heavy 679.404 / 969.574 12477.0 35.40420150756836 48 20 10 10 8 6.1865058811277605 16.16421319586148 0.0 4 0.9923276431410266 14.080559404458313 12477.0 30.007974683544305 1.0 - - - - - - - 744.8571428571429 24 7 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) 1501 190 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9095.[MT7]-LQSWER.2y4_1.heavy 481.762 / 577.273 20967.0 25.501699447631836 46 18 10 10 8 7.400834777246284 13.51198925659683 0.0 4 0.9875711311538384 11.05848728438922 20967.0 55.15982062780269 0.0 - - - - - - - 371.6666666666667 41 6 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 1503 190 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9095.[MT7]-LQSWER.2y5_1.heavy 481.762 / 705.331 41935.0 25.501699447631836 46 18 10 10 8 7.400834777246284 13.51198925659683 0.0 4 0.9875711311538384 11.05848728438922 41935.0 52.11652786675208 0.0 - - - - - - - 836.25 83 12 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 1505 190 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9095.[MT7]-LQSWER.2y3_1.heavy 481.762 / 490.241 3123.0 25.501699447631836 46 18 10 10 8 7.400834777246284 13.51198925659683 0.0 4 0.9875711311538384 11.05848728438922 3123.0 5.695156950672646 3.0 - - - - - - - 780.5 8 8 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 1507 190 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9095.[MT7]-LQSWER.2b5_1.heavy 481.762 / 788.406 9815.0 25.501699447631836 46 18 10 10 8 7.400834777246284 13.51198925659683 0.0 4 0.9875711311538384 11.05848728438922 9815.0 43.96479250124949 1.0 - - - - - - - 334.5 21 6 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 1509 191 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9096.[MT7]-TENLAK[MT7].2y4_1.heavy 482.289 / 589.379 13300.0 17.55204963684082 40 15 10 5 10 1.8331288846877374 43.6021685143822 0.046100616455078125 3 0.9534948471554034 5.700516637228541 13300.0 23.993022764309035 0.0 - - - - - - - 821.0 26 8 CCNA1 cyclin A1 1511 191 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9096.[MT7]-TENLAK[MT7].2b3_1.heavy 482.289 / 489.242 14450.0 17.55204963684082 40 15 10 5 10 1.8331288846877374 43.6021685143822 0.046100616455078125 3 0.9534948471554034 5.700516637228541 14450.0 29.73817967100299 0.0 - - - - - - - 304.85714285714283 28 7 CCNA1 cyclin A1 1513 191 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9096.[MT7]-TENLAK[MT7].2y5_1.heavy 482.289 / 718.422 20033.0 17.55204963684082 40 15 10 5 10 1.8331288846877374 43.6021685143822 0.046100616455078125 3 0.9534948471554034 5.700516637228541 20033.0 72.66284702623214 0.0 - - - - - - - 314.5 40 12 CCNA1 cyclin A1 1515 191 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9096.[MT7]-TENLAK[MT7].2b4_1.heavy 482.289 / 602.327 13957.0 17.55204963684082 40 15 10 5 10 1.8331288846877374 43.6021685143822 0.046100616455078125 3 0.9534948471554034 5.700516637228541 13957.0 16.22233318834276 0.0 - - - - - - - 410.75 27 4 CCNA1 cyclin A1 1517 192 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A508.[MT7]-EADPALNVETEIEILK[MT7].3y3_1.heavy 691.384 / 517.383 22179.0 39.44504928588867 41 15 10 6 10 1.970337468850641 41.44883090706985 0.03730010986328125 3 0.9570576004042144 5.934070419821307 22179.0 29.1633583721367 0.0 - - - - - - - 334.0 44 3 CHEK2 CHK2 checkpoint homolog (S. pombe) 1519 192 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A508.[MT7]-EADPALNVETEIEILK[MT7].3b5_1.heavy 691.384 / 628.306 39856.0 39.44504928588867 41 15 10 6 10 1.970337468850641 41.44883090706985 0.03730010986328125 3 0.9570576004042144 5.934070419821307 39856.0 44.45854877599185 0.0 - - - - - - - 278.3333333333333 79 3 CHEK2 CHK2 checkpoint homolog (S. pombe) 1521 192 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A508.[MT7]-EADPALNVETEIEILK[MT7].3y4_1.heavy 691.384 / 646.426 31185.0 39.44504928588867 41 15 10 6 10 1.970337468850641 41.44883090706985 0.03730010986328125 3 0.9570576004042144 5.934070419821307 31185.0 46.25146133093525 0.0 - - - - - - - 222.66666666666666 62 3 CHEK2 CHK2 checkpoint homolog (S. pombe) 1523 192 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A508.[MT7]-EADPALNVETEIEILK[MT7].3b7_1.heavy 691.384 / 855.433 25848.0 39.44504928588867 41 15 10 6 10 1.970337468850641 41.44883090706985 0.03730010986328125 3 0.9570576004042144 5.934070419821307 25848.0 98.30905118833262 0.0 - - - - - - - 262.42857142857144 51 7 CHEK2 CHK2 checkpoint homolog (S. pombe) 1525 193 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A509.[MT7]-TILVDWLVEVGEEYK[MT7].3b6_1.heavy 694.385 / 872.5 43415.0 50.07160186767578 44 14 10 10 10 2.6001660358736265 38.45908246640147 0.0 3 0.9392646946843277 4.9821727611200775 43415.0 286.31613941297076 0.0 - - - - - - - 168.41666666666666 86 12 CCNA1 cyclin A1 1527 193 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A509.[MT7]-TILVDWLVEVGEEYK[MT7].3b4_1.heavy 694.385 / 571.394 22847.0 50.07160186767578 44 14 10 10 10 2.6001660358736265 38.45908246640147 0.0 3 0.9392646946843277 4.9821727611200775 22847.0 100.22780654338548 0.0 - - - - - - - 217.6 45 15 CCNA1 cyclin A1 1529 193 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A509.[MT7]-TILVDWLVEVGEEYK[MT7].3b5_1.heavy 694.385 / 686.42 78541.0 50.07160186767578 44 14 10 10 10 2.6001660358736265 38.45908246640147 0.0 3 0.9392646946843277 4.9821727611200775 78541.0 313.5340953328297 0.0 - - - - - - - 164.08333333333334 157 12 CCNA1 cyclin A1 1531 193 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A509.[MT7]-TILVDWLVEVGEEYK[MT7].3y5_1.heavy 694.385 / 769.385 77505.0 50.07160186767578 44 14 10 10 10 2.6001660358736265 38.45908246640147 0.0 3 0.9392646946843277 4.9821727611200775 77505.0 319.9109042877464 0.0 - - - - - - - 134.7 155 10 CCNA1 cyclin A1 1533 194 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A503.[MT7]-RNVTLQNIIDRFQK[MT7].4y8_2.heavy 509.052 / 589.344 60002.0 34.32899856567383 37 7 10 10 10 0.686263026803575 80.63898401108986 0.0 3 0.7395561899832527 2.3637098760520305 60002.0 137.51553900087643 0.0 - - - - - - - 326.0 120 8 MID2;MID1 midline 2;midline 1 (Opitz/BBB syndrome) 1535 194 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A503.[MT7]-RNVTLQNIIDRFQK[MT7].4b4_1.heavy 509.052 / 615.37 10924.0 34.32899856567383 37 7 10 10 10 0.686263026803575 80.63898401108986 0.0 3 0.7395561899832527 2.3637098760520305 10924.0 5.8641104294478525 1.0 - - - - - - - 277.1 21 10 MID2;MID1 midline 2;midline 1 (Opitz/BBB syndrome) 1537 194 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A503.[MT7]-RNVTLQNIIDRFQK[MT7].4b5_1.heavy 509.052 / 728.453 16794.0 34.32899856567383 37 7 10 10 10 0.686263026803575 80.63898401108986 0.0 3 0.7395561899832527 2.3637098760520305 16794.0 115.80647852760737 0.0 - - - - - - - 224.125 33 8 MID2;MID1 midline 2;midline 1 (Opitz/BBB syndrome) 1539 194 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A503.[MT7]-RNVTLQNIIDRFQK[MT7].4y3_1.heavy 509.052 / 566.342 11250.0 34.32899856567383 37 7 10 10 10 0.686263026803575 80.63898401108986 0.0 3 0.7395561899832527 2.3637098760520305 11250.0 45.5521472392638 0.0 - - - - - - - 312.4166666666667 22 12 MID2;MID1 midline 2;midline 1 (Opitz/BBB syndrome) 1541 195 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9299.[MT7]-TPGWHQLQPR.3y6_1.heavy 455.25 / 778.432 8846.0 23.36549949645996 43 17 10 6 10 3.5508541989458013 21.476139214140346 0.0373992919921875 3 0.9733944298591303 7.54933096943803 8846.0 62.958243923180504 0.0 - - - - - - - 288.0 17 5 PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 1543 195 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9299.[MT7]-TPGWHQLQPR.3b4_1.heavy 455.25 / 586.311 7406.0 23.36549949645996 43 17 10 6 10 3.5508541989458013 21.476139214140346 0.0373992919921875 3 0.9733944298591303 7.54933096943803 7406.0 17.64056560711805 0.0 - - - - - - - 319.8888888888889 14 9 PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 1545 195 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9299.[MT7]-TPGWHQLQPR.3y4_1.heavy 455.25 / 513.314 38470.0 23.36549949645996 43 17 10 6 10 3.5508541989458013 21.476139214140346 0.0373992919921875 3 0.9733944298591303 7.54933096943803 38470.0 66.37594167679222 0.0 - - - - - - - 329.0 76 5 PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 1547 195 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9299.[MT7]-TPGWHQLQPR.3y5_1.heavy 455.25 / 641.373 34767.0 23.36549949645996 43 17 10 6 10 3.5508541989458013 21.476139214140346 0.0373992919921875 3 0.9733944298591303 7.54933096943803 34767.0 34.602820857331295 0.0 - - - - - - - 359.75 69 4 PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 1549 196 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A500.[MT7]-LAQLLGEPAETQGTTEAR.3b4_1.heavy 677.028 / 570.373 302120.0 33.0791015625 48 18 10 10 10 4.782847890053413 20.908045227188534 0.0 3 0.9811616298991251 8.97752363187678 302120.0 330.2859131518405 0.0 - - - - - - - 341.0 604 1 GADD45B growth arrest and DNA-damage-inducible, beta 1551 196 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A500.[MT7]-LAQLLGEPAETQGTTEAR.3b5_1.heavy 677.028 / 683.457 154045.0 33.0791015625 48 18 10 10 10 4.782847890053413 20.908045227188534 0.0 3 0.9811616298991251 8.97752363187678 154045.0 133.68308345035192 0.0 - - - - - - - 171.0 308 1 GADD45B growth arrest and DNA-damage-inducible, beta 1553 196 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A500.[MT7]-LAQLLGEPAETQGTTEAR.3y8_1.heavy 677.028 / 863.422 144322.0 33.0791015625 48 18 10 10 10 4.782847890053413 20.908045227188534 0.0 3 0.9811616298991251 8.97752363187678 144322.0 206.60110619977453 0.0 - - - - - - - 171.0 288 2 GADD45B growth arrest and DNA-damage-inducible, beta 1555 196 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A500.[MT7]-LAQLLGEPAETQGTTEAR.3b7_1.heavy 677.028 / 869.521 242242.0 33.0791015625 48 18 10 10 10 4.782847890053413 20.908045227188534 0.0 3 0.9811616298991251 8.97752363187678 242242.0 123.30390842172602 0.0 - - - - - - - 171.0 484 1 GADD45B growth arrest and DNA-damage-inducible, beta 1557 197 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9681.[MT7]-C[CAM]LGPSAR.2b3_1.heavy 452.743 / 475.246 7051.0 17.87654972076416 45 20 10 5 10 14.602496244267943 6.848144202690957 0.04509925842285156 3 0.9985361629384861 32.25247210437933 7051.0 15.359669234997872 3.0 - - - - - - - 302.4 14 5 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1559 197 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9681.[MT7]-C[CAM]LGPSAR.2y5_1.heavy 452.743 / 487.262 15109.0 17.87654972076416 45 20 10 5 10 14.602496244267943 6.848144202690957 0.04509925842285156 3 0.9985361629384861 32.25247210437933 15109.0 49.75101317122594 0.0 - - - - - - - 692.625 30 8 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1561 197 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9681.[MT7]-C[CAM]LGPSAR.2y6_1.heavy 452.743 / 600.346 22160.0 17.87654972076416 45 20 10 5 10 14.602496244267943 6.848144202690957 0.04509925842285156 3 0.9985361629384861 32.25247210437933 22160.0 58.597000397298366 0.0 - - - - - - - 764.6666666666666 44 9 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1563 197 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9681.[MT7]-C[CAM]LGPSAR.2b5_1.heavy 452.743 / 659.33 3861.0 17.87654972076416 45 20 10 5 10 14.602496244267943 6.848144202690957 0.04509925842285156 3 0.9985361629384861 32.25247210437933 3861.0 9.482059089458568 1.0 - - - - - - - 336.0 7 4 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1565 198 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9680.[MT7]-HSHPTR.2b3_1.heavy 439.739 / 506.259 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1567 198 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9680.[MT7]-HSHPTR.2y4_1.heavy 439.739 / 510.278 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1569 198 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9680.[MT7]-HSHPTR.2y5_1.heavy 439.739 / 597.31 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1571 198 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9680.[MT7]-HSHPTR.2b5_1.heavy 439.739 / 704.36 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1573 199 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9496.[MT7]-AQATQLLEGLVQELQK[MT7].2y9_1.heavy 1029.1 / 1187.68 3971.0 45.65285015106201 46 20 10 6 10 5.315200364323375 18.813966199885677 0.037799835205078125 3 0.9917913177733191 13.612193615032462 3971.0 2.9986784140969167 1.0 - - - - - - - 244.15384615384616 7 13 STAT5A signal transducer and activator of transcription 5A 1575 199 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9496.[MT7]-AQATQLLEGLVQELQK[MT7].2b4_1.heavy 1029.1 / 516.29 3404.0 45.65285015106201 46 20 10 6 10 5.315200364323375 18.813966199885677 0.037799835205078125 3 0.9917913177733191 13.612193615032462 3404.0 28.341674008810575 0.0 - - - - - - - 169.9 6 10 STAT5A signal transducer and activator of transcription 5A 1577 199 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9496.[MT7]-AQATQLLEGLVQELQK[MT7].2b6_1.heavy 1029.1 / 757.432 7035.0 45.65285015106201 46 20 10 6 10 5.315200364323375 18.813966199885677 0.037799835205078125 3 0.9917913177733191 13.612193615032462 7035.0 34.93655014252397 0.0 - - - - - - - 255.16666666666666 14 12 STAT5A signal transducer and activator of transcription 5A 1579 199 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9496.[MT7]-AQATQLLEGLVQELQK[MT7].2b5_1.heavy 1029.1 / 644.348 6241.0 45.65285015106201 46 20 10 6 10 5.315200364323375 18.813966199885677 0.037799835205078125 3 0.9917913177733191 13.612193615032462 6241.0 42.08914874319772 0.0 - - - - - - - 226.75 12 8 STAT5A signal transducer and activator of transcription 5A 1581 200 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9495.[MT7]-AILVDWLVEVGEEYK[MT7].3b6_1.heavy 684.382 / 842.489 68092.0 50.457401275634766 44 14 10 10 10 2.453884513757567 40.75171404332827 0.0 3 0.9388044500956125 4.963207505138077 68092.0 222.36293750000002 0.0 - - - - - - - 159.91666666666666 136 12 CCNA2 cyclin A2 1583 200 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9495.[MT7]-AILVDWLVEVGEEYK[MT7].3b4_1.heavy 684.382 / 541.383 32949.0 50.457401275634766 44 14 10 10 10 2.453884513757567 40.75171404332827 0.0 3 0.9388044500956125 4.963207505138077 32949.0 196.56278191753597 0.0 - - - - - - - 219.2 65 15 CCNA2 cyclin A2 1585 200 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9495.[MT7]-AILVDWLVEVGEEYK[MT7].3b5_1.heavy 684.382 / 656.41 123755.0 50.457401275634766 44 14 10 10 10 2.453884513757567 40.75171404332827 0.0 3 0.9388044500956125 4.963207505138077 123755.0 274.81821192853874 0.0 - - - - - - - 233.0 247 10 CCNA2 cyclin A2 1587 200 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9495.[MT7]-AILVDWLVEVGEEYK[MT7].3y5_1.heavy 684.382 / 769.385 119185.0 50.457401275634766 44 14 10 10 10 2.453884513757567 40.75171404332827 0.0 3 0.9388044500956125 4.963207505138077 119185.0 450.73526444522406 0.0 - - - - - - - 201.75 238 12 CCNA2 cyclin A2 1589 201 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9687.[MT7]-C[CAM]PGGLPGHAGGAAPGR.3y7_1.heavy 525.936 / 585.31 11141.0 18.91699981689453 48 18 10 10 10 19.304293636500404 5.180194721599179 0.0 3 0.9869375363039671 10.786385532243276 11141.0 28.172643678160917 0.0 - - - - - - - 232.0 22 6 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1591 201 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9687.[MT7]-C[CAM]PGGLPGHAGGAAPGR.3y11_1.heavy 525.936 / 947.481 2437.0 18.91699981689453 48 18 10 10 10 19.304293636500404 5.180194721599179 0.0 3 0.9869375363039671 10.786385532243276 2437.0 13.805747126436783 1.0 - - - - - - - 232.0 4 3 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1593 201 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9687.[MT7]-C[CAM]PGGLPGHAGGAAPGR.3b5_1.heavy 525.936 / 629.32 7312.0 18.91699981689453 48 18 10 10 10 19.304293636500404 5.180194721599179 0.0 3 0.9869375363039671 10.786385532243276 7312.0 59.88275862068966 0.0 - - - - - - - 223.71428571428572 14 7 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1595 201 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9687.[MT7]-C[CAM]PGGLPGHAGGAAPGR.3y8_1.heavy 525.936 / 656.347 12534.0 18.91699981689453 48 18 10 10 10 19.304293636500404 5.180194721599179 0.0 3 0.9869375363039671 10.786385532243276 12534.0 31.695172413793102 0.0 - - - - - - - 348.0 25 2 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1597 202 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9686.[MT7]-C[CAM]LGPSARGPG.2y8_1.heavy 558.291 / 698.358 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1599 202 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9686.[MT7]-C[CAM]LGPSARGPG.2y9_1.heavy 558.291 / 811.442 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1601 202 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9686.[MT7]-C[CAM]LGPSARGPG.2b5_1.heavy 558.291 / 659.33 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1603 202 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9686.[MT7]-C[CAM]LGPSARGPG.2y7_1.heavy 558.291 / 641.337 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1605 203 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9494.[MT7]-TLC[CAM]GTPNYIAPEVLSK[MT7].3y6_1.heavy 684.374 / 816.495 53084.0 32.362300872802734 44 14 10 10 10 2.2264880747169298 35.725599207194485 0.0 3 0.9472609614278747 5.3501856030093755 53084.0 80.53738333186968 0.0 - - - - - - - 663.75 106 8 PLK1 polo-like kinase 1 1607 203 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9494.[MT7]-TLC[CAM]GTPNYIAPEVLSK[MT7].3b5_1.heavy 684.374 / 677.341 33620.0 32.362300872802734 44 14 10 10 10 2.2264880747169298 35.725599207194485 0.0 3 0.9472609614278747 5.3501856030093755 33620.0 57.299623352165725 0.0 - - - - - - - 783.8571428571429 67 7 PLK1 polo-like kinase 1 1609 203 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9494.[MT7]-TLC[CAM]GTPNYIAPEVLSK[MT7].3y4_1.heavy 684.374 / 590.399 17164.0 32.362300872802734 44 14 10 10 10 2.2264880747169298 35.725599207194485 0.0 3 0.9472609614278747 5.3501856030093755 17164.0 21.906860718015537 0.0 - - - - - - - 758.5714285714286 34 7 PLK1 polo-like kinase 1 1611 203 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9494.[MT7]-TLC[CAM]GTPNYIAPEVLSK[MT7].3b7_1.heavy 684.374 / 888.437 24419.0 32.362300872802734 44 14 10 10 10 2.2264880747169298 35.725599207194485 0.0 3 0.9472609614278747 5.3501856030093755 24419.0 57.02365348399246 0.0 - - - - - - - 265.5 48 6 PLK1 polo-like kinase 1 1613 204 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9689.[MT7]-C[CAM]PGGLPGHAGGAAPGRGAAGR.4y16_2.heavy 497.758 / 680.353 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1615 204 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9689.[MT7]-C[CAM]PGGLPGHAGGAAPGRGAAGR.4b4_1.heavy 497.758 / 516.236 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1617 204 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9689.[MT7]-C[CAM]PGGLPGHAGGAAPGRGAAGR.4b5_1.heavy 497.758 / 629.32 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1619 204 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9689.[MT7]-C[CAM]PGGLPGHAGGAAPGRGAAGR.4y13_2.heavy 497.758 / 534.786 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1621 205 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9688.[MT7]-RC[CAM]PGGLPGHAGGAAPGR.4y8_1.heavy 433.729 / 656.347 11446.0 17.222899436950684 36 11 10 5 10 2.1213691719474093 37.601010982816504 0.04780006408691406 3 0.8670580236084636 3.3465569182311006 11446.0 44.11800539083558 0.0 - - - - - - - 238.5 22 8 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1623 205 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9688.[MT7]-RC[CAM]PGGLPGHAGGAAPGR.4b8_2.heavy 433.729 / 470.251 23052.0 17.222899436950684 36 11 10 5 10 2.1213691719474093 37.601010982816504 0.04780006408691406 3 0.8670580236084636 3.3465569182311006 23052.0 39.766253369272235 0.0 - - - - - - - 198.75 46 4 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1625 205 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9688.[MT7]-RC[CAM]PGGLPGHAGGAAPGR.4y7_1.heavy 433.729 / 585.31 17488.0 17.222899436950684 36 11 10 5 10 2.1213691719474093 37.601010982816504 0.04780006408691406 3 0.8670580236084636 3.3465569182311006 17488.0 89.03481761006289 0.0 - - - - - - - 249.85714285714286 34 7 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1627 205 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9688.[MT7]-RC[CAM]PGGLPGHAGGAAPGR.4b6_1.heavy 433.729 / 785.421 3339.0 17.222899436950684 36 11 10 5 10 2.1213691719474093 37.601010982816504 0.04780006408691406 3 0.8670580236084636 3.3465569182311006 3339.0 24.233999999999998 0.0 - - - - - - - 318.0 6 3 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1629 206 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9490.[MT7]-GGTVPADLEAAAASLPSSK[MT7].3y6_1.heavy 677.372 / 762.448 10721.0 34.19019889831543 35 13 8 6 8 1.978888601235563 38.83613421952449 0.03639984130859375 4 0.9183310951391719 4.288772697397446 10721.0 12.74299719980234 1.0 - - - - - - - 365.25 136 8 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 1631 206 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9490.[MT7]-GGTVPADLEAAAASLPSSK[MT7].3y4_1.heavy 677.372 / 562.332 53931.0 34.19019889831543 35 13 8 6 8 1.978888601235563 38.83613421952449 0.03639984130859375 4 0.9183310951391719 4.288772697397446 53931.0 38.65569401910553 0.0 - - - - - - - 340.9 107 10 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 1633 206 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9490.[MT7]-GGTVPADLEAAAASLPSSK[MT7].3b8_1.heavy 677.372 / 855.469 7310.0 34.19019889831543 35 13 8 6 8 1.978888601235563 38.83613421952449 0.03639984130859375 4 0.9183310951391719 4.288772697397446 7310.0 0.9931770581991998 1.0 - - - - - - - 719.5714285714286 145 7 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 1635 206 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9490.[MT7]-GGTVPADLEAAAASLPSSK[MT7].3b7_1.heavy 677.372 / 742.385 25991.0 34.19019889831543 35 13 8 6 8 1.978888601235563 38.83613421952449 0.03639984130859375 4 0.9183310951391719 4.288772697397446 25991.0 44.544043983652095 0.0 - - - - - - - 337.15384615384613 51 13 MAD1L1 MAD1 mitotic arrest deficient-like 1 (yeast) 1637 207 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9685.[MT7]-LGQQPLPR.2y5_1.heavy 526.82 / 610.367 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1639 207 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9685.[MT7]-LGQQPLPR.2b4_1.heavy 526.82 / 571.332 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1641 207 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9685.[MT7]-LGQQPLPR.2b6_1.heavy 526.82 / 781.469 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1643 207 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9685.[MT7]-LGQQPLPR.2y7_1.heavy 526.82 / 795.447 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1645 208 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9684.[MT7]-RFLVTLR.3y3_1.heavy 350.23 / 389.251 5930.0 28.936599731445312 47 17 10 10 10 4.147670456750716 24.10991930114428 0.0 3 0.971100073003689 7.242066151280379 5930.0 3.929655589257759 1.0 - - - - - - - 395.2 19 5 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1647 208 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9684.[MT7]-RFLVTLR.3b4_1.heavy 350.23 / 660.431 878.0 28.936599731445312 47 17 10 10 10 4.147670456750716 24.10991930114428 0.0 3 0.971100073003689 7.242066151280379 878.0 -1.2 1.0 - - - - - - - 0.0 1 0 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1649 208 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9684.[MT7]-RFLVTLR.3b3_1.heavy 350.23 / 561.363 3075.0 28.936599731445312 47 17 10 10 10 4.147670456750716 24.10991930114428 0.0 3 0.971100073003689 7.242066151280379 3075.0 20.981828535928763 0.0 - - - - - - - 439.0 6 1 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1651 208 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9684.[MT7]-RFLVTLR.3y4_1.heavy 350.23 / 488.319 4612.0 28.936599731445312 47 17 10 10 10 4.147670456750716 24.10991930114428 0.0 3 0.971100073003689 7.242066151280379 4612.0 31.864727272727276 0.0 - - - - - - - 274.75 9 8 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1653 209 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A515.[MT7]-EQTQDQFQMIVISLK[MT7].3b6_1.heavy 699.382 / 874.402 5869.0 39.92244911193848 38 12 10 6 10 1.1031853217648095 52.96937471000638 0.036701202392578125 3 0.8839006293799158 3.5863547914180787 5869.0 39.662919416648926 0.0 - - - - - - - 168.0 11 7 SMC1B structural maintenance of chromosomes 1B 1655 209 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A515.[MT7]-EQTQDQFQMIVISLK[MT7].3b4_1.heavy 699.382 / 631.317 3018.0 39.92244911193848 38 12 10 6 10 1.1031853217648095 52.96937471000638 0.036701202392578125 3 0.8839006293799158 3.5863547914180787 3018.0 8.78255567798591 0.0 - - - - - - - 234.8 6 10 SMC1B structural maintenance of chromosomes 1B 1657 209 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A515.[MT7]-EQTQDQFQMIVISLK[MT7].3b5_1.heavy 699.382 / 746.344 4863.0 39.92244911193848 38 12 10 6 10 1.1031853217648095 52.96937471000638 0.036701202392578125 3 0.8839006293799158 3.5863547914180787 4863.0 16.959231813674386 2.0 - - - - - - - 259.09090909090907 9 11 SMC1B structural maintenance of chromosomes 1B 1659 209 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A515.[MT7]-EQTQDQFQMIVISLK[MT7].3y4_1.heavy 699.382 / 604.415 11235.0 39.92244911193848 38 12 10 6 10 1.1031853217648095 52.96937471000638 0.036701202392578125 3 0.8839006293799158 3.5863547914180787 11235.0 25.02165485671923 0.0 - - - - - - - 579.2727272727273 22 11 SMC1B structural maintenance of chromosomes 1B 1661 210 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9283.[MT7]-TWFVEDINR.2y4_1.heavy 662.344 / 517.273 9959.0 34.582000732421875 45 15 10 10 10 2.754105017960413 28.940696070698866 0.0 3 0.9567546044717515 5.913093840048144 9959.0 13.774550484094053 1.0 - - - - - - - 803.2222222222222 19 9 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 1663 210 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9283.[MT7]-TWFVEDINR.2y8_1.heavy 662.344 / 1078.53 37107.0 34.582000732421875 45 15 10 10 10 2.754105017960413 28.940696070698866 0.0 3 0.9567546044717515 5.913093840048144 37107.0 262.4367973119249 0.0 - - - - - - - 257.2 74 10 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 1665 210 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9283.[MT7]-TWFVEDINR.2y6_1.heavy 662.344 / 745.384 20240.0 34.582000732421875 45 15 10 10 10 2.754105017960413 28.940696070698866 0.0 3 0.9567546044717515 5.913093840048144 20240.0 36.422944138450404 0.0 - - - - - - - 780.5714285714286 40 7 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 1667 210 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9283.[MT7]-TWFVEDINR.2y7_1.heavy 662.344 / 892.452 23292.0 34.582000732421875 45 15 10 10 10 2.754105017960413 28.940696070698866 0.0 3 0.9567546044717515 5.913093840048144 23292.0 41.934701106357544 0.0 - - - - - - - 232.11111111111111 46 9 PIK3R3 phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 1669 211 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9081.[MT7]-RQAPGK[MT7].2y4_1.heavy 472.798 / 516.326 2246.0 12.853875398635864 31 16 0 7 8 1.2076382480039614 50.95637722000648 0.02110004425048828 4 0.9613263971349555 6.255260174335548 2246.0 7.415222410343236 0.0 - - - - - - - 127.93939393939394 4 33 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 1671 211 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9081.[MT7]-RQAPGK[MT7].2y5_1.heavy 472.798 / 644.385 2465.0 12.853875398635864 31 16 0 7 8 1.2076382480039614 50.95637722000648 0.02110004425048828 4 0.9613263971349555 6.255260174335548 2465.0 5.497445255474453 2.0 - - - - - - - 165.81578947368422 4 38 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 1673 211 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9081.[MT7]-RQAPGK[MT7].2y3_1.heavy 472.798 / 445.289 6519.0 12.853875398635864 31 16 0 7 8 1.2076382480039614 50.95637722000648 0.02110004425048828 4 0.9613263971349555 6.255260174335548 6519.0 33.31962303769623 1.0 - - - - - - - 634.0 127 7 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 1675 211 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9081.[MT7]-RQAPGK[MT7].2b5_1.heavy 472.798 / 654.38 2136.0 12.853875398635864 31 16 0 7 8 1.2076382480039614 50.95637722000648 0.02110004425048828 4 0.9613263971349555 6.255260174335548 2136.0 2.8754481004030232 2.0 - - - - - - - 179.425 4 40 MYC v-myc myelocytomatosis viral oncogene homolog (avian) 1677 212 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A518.[MT7]-GAVEGILIQQVFESGGSK[MT7].3y7_1.heavy 703.059 / 855.433 56646.0 39.312801361083984 42 12 10 10 10 2.1317585348703245 38.610363764524806 0.0 3 0.8972535625622166 3.8167030164000493 56646.0 74.539037008756 0.0 - - - - - - - 1142.4285714285713 113 7 AIRE autoimmune regulator 1679 212 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A518.[MT7]-GAVEGILIQQVFESGGSK[MT7].3b6_1.heavy 703.059 / 671.385 66143.0 39.312801361083984 42 12 10 10 10 2.1317585348703245 38.610363764524806 0.0 3 0.8972535625622166 3.8167030164000493 66143.0 85.36159256098637 0.0 - - - - - - - 642.4285714285714 132 7 AIRE autoimmune regulator 1681 212 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A518.[MT7]-GAVEGILIQQVFESGGSK[MT7].3b5_1.heavy 703.059 / 558.3 40985.0 39.312801361083984 42 12 10 10 10 2.1317585348703245 38.610363764524806 0.0 3 0.8972535625622166 3.8167030164000493 40985.0 68.34963604651162 0.0 - - - - - - - 666.25 81 8 AIRE autoimmune regulator 1683 212 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A518.[MT7]-GAVEGILIQQVFESGGSK[MT7].3b7_1.heavy 703.059 / 784.469 73307.0 39.312801361083984 42 12 10 10 10 2.1317585348703245 38.610363764524806 0.0 3 0.8972535625622166 3.8167030164000493 73307.0 136.73460740370186 0.0 - - - - - - - 566.5 146 10 AIRE autoimmune regulator 1685 213 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9280.[MT7]-VSLIC[CAM]PLVK[MT7].2y4_1.heavy 658.914 / 600.42 47480.0 34.041348457336426 39 13 10 6 10 1.7354620341477862 45.681157187014335 0.037799835205078125 3 0.9220995353731322 4.392703418801766 47480.0 44.24731705148636 0.0 - - - - - - - 792.0 94 9 PIAS4 protein inhibitor of activated STAT, 4 1687 213 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9280.[MT7]-VSLIC[CAM]PLVK[MT7].2y8_1.heavy 658.914 / 1073.65 24955.0 34.041348457336426 39 13 10 6 10 1.7354620341477862 45.681157187014335 0.037799835205078125 3 0.9220995353731322 4.392703418801766 24955.0 62.25913065843621 0.0 - - - - - - - 259.2 49 10 PIAS4 protein inhibitor of activated STAT, 4 1689 213 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9280.[MT7]-VSLIC[CAM]PLVK[MT7].2y5_1.heavy 658.914 / 760.451 63198.0 34.041348457336426 39 13 10 6 10 1.7354620341477862 45.681157187014335 0.037799835205078125 3 0.9220995353731322 4.392703418801766 63198.0 97.73676587301586 0.0 - - - - - - - 810.0 126 8 PIAS4 protein inhibitor of activated STAT, 4 1691 213 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9280.[MT7]-VSLIC[CAM]PLVK[MT7].2b4_1.heavy 658.914 / 557.378 42618.0 34.041348457336426 39 13 10 6 10 1.7354620341477862 45.681157187014335 0.037799835205078125 3 0.9220995353731322 4.392703418801766 42618.0 55.8301646090535 0.0 - - - - - - - 833.1428571428571 85 7 PIAS4 protein inhibitor of activated STAT, 4 1693 214 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9086.[MT7]-QIIGTK[MT7].2y4_1.heavy 474.31 / 562.368 2826.0 19.836700439453125 23 3 6 10 4 0.3307197612998693 141.57392184453514 0.0 10 0.5692654966906643 1.8082862992898776 2826.0 1.8131830807265215 11.0 - - - - - - - 699.4285714285714 129 7 MID1 midline 1 (Opitz/BBB syndrome) 1695 214 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9086.[MT7]-QIIGTK[MT7].2y5_1.heavy 474.31 / 675.452 5274.0 19.836700439453125 23 3 6 10 4 0.3307197612998693 141.57392184453514 0.0 10 0.5692654966906643 1.8082862992898776 5274.0 6.25412389380531 3.0 - - - - - - - 314.0 129 3 MID1 midline 1 (Opitz/BBB syndrome) 1697 214 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9086.[MT7]-QIIGTK[MT7].2b5_1.heavy 474.31 / 657.405 9607.0 19.836700439453125 23 3 6 10 4 0.3307197612998693 141.57392184453514 0.0 10 0.5692654966906643 1.8082862992898776 9607.0 10.37159514008374 2.0 - - - - - - - 251.0 19 6 MID1 midline 1 (Opitz/BBB syndrome) 1699 214 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9086.[MT7]-QIIGTK[MT7].2y1_1.heavy 474.31 / 291.215 N/A 19.836700439453125 23 3 6 10 4 0.3307197612998693 141.57392184453514 0.0 10 0.5692654966906643 1.8082862992898776 41254.0 8.79737088486879 1.0 - - - - - - - 2700.0 82 3 MID1 midline 1 (Opitz/BBB syndrome) 1701 215 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A519.[MT7]-AQTALAVIPSSIVLPSQK[MT7].3b4_1.heavy 704.427 / 516.29 30711.0 36.33660125732422 46 16 10 10 10 2.754233774998962 28.908879318474742 0.0 3 0.9627405988200606 6.373627305091004 30711.0 23.495026653798906 0.0 - - - - - - - 709.9 61 10 UBOX5 U-box domain containing 5 1703 215 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A519.[MT7]-AQTALAVIPSSIVLPSQK[MT7].3b5_1.heavy 704.427 / 629.374 44292.0 36.33660125732422 46 16 10 10 10 2.754233774998962 28.908879318474742 0.0 3 0.9627405988200606 6.373627305091004 44292.0 52.61979251621025 0.0 - - - - - - - 1157.5 88 8 UBOX5 U-box domain containing 5 1705 215 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A519.[MT7]-AQTALAVIPSSIVLPSQK[MT7].3y4_1.heavy 704.427 / 603.358 127938.0 36.33660125732422 46 16 10 10 10 2.754233774998962 28.908879318474742 0.0 3 0.9627405988200606 6.373627305091004 127938.0 131.2538876889849 0.0 - - - - - - - 385.75 255 4 UBOX5 U-box domain containing 5 1707 215 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A519.[MT7]-AQTALAVIPSSIVLPSQK[MT7].3b7_1.heavy 704.427 / 799.479 65281.0 36.33660125732422 46 16 10 10 10 2.754233774998962 28.908879318474742 0.0 3 0.9627405988200606 6.373627305091004 65281.0 113.46682166877426 0.0 - - - - - - - 694.4 130 10 UBOX5 U-box domain containing 5 1709 216 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9281.[MT7]-GIGAGGSITGLK[MT7].2y4_1.heavy 659.9 / 562.368 11323.0 27.202299118041992 42 12 10 10 10 1.0588257011569493 55.58610435048007 0.0 3 0.8910796124675492 3.7049696437040676 11323.0 69.09067250776533 0.0 - - - - - - - 388.14285714285717 22 7 DDB2 damage-specific DNA binding protein 2, 48kDa 1711 216 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9281.[MT7]-GIGAGGSITGLK[MT7].2y8_1.heavy 659.9 / 876.527 11775.0 27.202299118041992 42 12 10 10 10 1.0588257011569493 55.58610435048007 0.0 3 0.8910796124675492 3.7049696437040676 11775.0 71.06543397995664 0.0 - - - - - - - 377.3333333333333 23 6 DDB2 damage-specific DNA binding protein 2, 48kDa 1713 216 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9281.[MT7]-GIGAGGSITGLK[MT7].2y6_1.heavy 659.9 / 762.484 6567.0 27.202299118041992 42 12 10 10 10 1.0588257011569493 55.58610435048007 0.0 3 0.8910796124675492 3.7049696437040676 6567.0 14.099568438828666 0.0 - - - - - - - 339.5 13 4 DDB2 damage-specific DNA binding protein 2, 48kDa 1715 216 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9281.[MT7]-GIGAGGSITGLK[MT7].2y10_1.heavy 659.9 / 1004.59 15399.0 27.202299118041992 42 12 10 10 10 1.0588257011569493 55.58610435048007 0.0 3 0.8910796124675492 3.7049696437040676 15399.0 92.93729238703628 0.0 - - - - - - - 339.5 30 10 DDB2 damage-specific DNA binding protein 2, 48kDa 1717 217 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9289.[MT7]-DSTLIMQLLR.2y5_1.heavy 667.385 / 660.386 28127.0 42.066898345947266 48 18 10 10 10 5.645903538423616 17.71195687624533 0.0 3 0.9813552614200075 9.02416705802282 28127.0 51.60413872889097 0.0 - - - - - - - 303.54545454545456 56 11 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1719 217 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9289.[MT7]-DSTLIMQLLR.2b4_1.heavy 667.385 / 561.3 28445.0 42.066898345947266 48 18 10 10 10 5.645903538423616 17.71195687624533 0.0 3 0.9813552614200075 9.02416705802282 28445.0 106.17198981039684 0.0 - - - - - - - 333.9 56 10 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1721 217 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9289.[MT7]-DSTLIMQLLR.2y9_1.heavy 667.385 / 1074.63 25267.0 42.066898345947266 48 18 10 10 10 5.645903538423616 17.71195687624533 0.0 3 0.9813552614200075 9.02416705802282 25267.0 176.71008805031445 0.0 - - - - - - - 247.33333333333334 50 9 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1723 217 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9289.[MT7]-DSTLIMQLLR.2y6_1.heavy 667.385 / 773.47 30829.0 42.066898345947266 48 18 10 10 10 5.645903538423616 17.71195687624533 0.0 3 0.9813552614200075 9.02416705802282 30829.0 55.85292166664688 0.0 - - - - - - - 794.625 61 8 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1725 218 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A512.[MT7]-RAQLQELLLQQIAFK[MT7].3y3_1.heavy 696.424 / 509.32 179509.0 38.783199310302734 41 11 10 10 10 0.7132337623055347 70.84500458200898 0.0 3 0.8619460317860793 3.282540445286304 179509.0 250.11542570722463 0.0 - - - - - - - 380.3333333333333 359 6 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 1727 218 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A512.[MT7]-RAQLQELLLQQIAFK[MT7].3b6_1.heavy 696.424 / 870.491 45447.0 38.783199310302734 41 11 10 10 10 0.7132337623055347 70.84500458200898 0.0 3 0.8619460317860793 3.282540445286304 45447.0 162.41029141104292 0.0 - - - - - - - 271.6666666666667 90 9 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 1729 218 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A512.[MT7]-RAQLQELLLQQIAFK[MT7].3y4_1.heavy 696.424 / 622.404 82750.0 38.783199310302734 41 11 10 10 10 0.7132337623055347 70.84500458200898 0.0 3 0.8619460317860793 3.282540445286304 82750.0 100.99674320578211 0.0 - - - - - - - 1256.4285714285713 165 7 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 1731 218 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A512.[MT7]-RAQLQELLLQQIAFK[MT7].3b7_1.heavy 696.424 / 983.575 44796.0 38.783199310302734 41 11 10 10 10 0.7132337623055347 70.84500458200898 0.0 3 0.8619460317860793 3.282540445286304 44796.0 108.41662551578102 0.0 - - - - - - - 309.7 89 10 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 1733 219 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A513.[MT7]-K[MT7]LEELELDEQQRK[MT7].3b6_1.heavy 697.399 / 1030.6 5311.0 25.215599060058594 48 18 10 10 10 5.624980231180551 17.777840257229197 0.0 3 0.9809848853937913 8.935570886292396 5311.0 4.621292569003836 2.0 - - - - - - - 295.0 11 6 MAP2K1 mitogen-activated protein kinase kinase 1 1735 219 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A513.[MT7]-K[MT7]LEELELDEQQRK[MT7].3y6_1.heavy 697.399 / 947.503 7302.0 25.215599060058594 48 18 10 10 10 5.624980231180551 17.777840257229197 0.0 3 0.9809848853937913 8.935570886292396 7302.0 42.95294117647059 0.0 - - - - - - - 221.0 14 6 MAP2K1 mitogen-activated protein kinase kinase 1 1737 219 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A513.[MT7]-K[MT7]LEELELDEQQRK[MT7].3b4_1.heavy 697.399 / 788.476 6638.0 25.215599060058594 48 18 10 10 10 5.624980231180551 17.777840257229197 0.0 3 0.9809848853937913 8.935570886292396 6638.0 38.56363196224835 0.0 - - - - - - - 332.0 13 4 MAP2K1 mitogen-activated protein kinase kinase 1 1739 219 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A513.[MT7]-K[MT7]LEELELDEQQRK[MT7].3y5_1.heavy 697.399 / 832.476 3098.0 25.215599060058594 48 18 10 10 10 5.624980231180551 17.777840257229197 0.0 3 0.9809848853937913 8.935570886292396 3098.0 15.41674157016131 0.0 - - - - - - - 316.14285714285717 6 7 MAP2K1 mitogen-activated protein kinase kinase 1 1741 220 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9692.[MT7]-LSTSAK[MT7].2y4_1.heavy 447.779 / 550.332 10859.0 17.436800003051758 38 18 2 10 8 4.196229691050642 23.830916647215812 0.0 4 0.9802621911696866 8.769926759222987 10859.0 17.721284722222222 0.0 - - - - - - - 329.3333333333333 21 9 UBE2E3;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1743 220 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9692.[MT7]-LSTSAK[MT7].2y5_1.heavy 447.779 / 637.364 51497.0 17.436800003051758 38 18 2 10 8 4.196229691050642 23.830916647215812 0.0 4 0.9802621911696866 8.769926759222987 51497.0 66.41920286302579 1.0 - - - - - - - 494.0 264 1 UBE2E3;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1745 220 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9692.[MT7]-LSTSAK[MT7].2b4_1.heavy 447.779 / 533.305 1316.0 17.436800003051758 38 18 2 10 8 4.196229691050642 23.830916647215812 0.0 4 0.9802621911696866 8.769926759222987 1316.0 2.0447499764688803 18.0 - - - - - - - 439.0 13 6 UBE2E3;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1747 220 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9692.[MT7]-LSTSAK[MT7].2y3_1.heavy 447.779 / 449.284 12010.0 17.436800003051758 38 18 2 10 8 4.196229691050642 23.830916647215812 0.0 4 0.9802621911696866 8.769926759222987 12010.0 55.46402237180512 1.0 - - - - - - - 284.3636363636364 24 11 UBE2E3;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1749 221 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9691.[MT7]-RC[CAM]PGGLPGHAGGAAPGRGAAGR.4b8_1.heavy 536.784 / 939.495 1824.0 16.5585994720459 37 14 10 3 10 2.445356714723312 40.89382927157719 0.0503997802734375 3 0.9333132838875414 4.7522488015239714 1824.0 6.6000000000000005 1.0 - - - - - - - 212.8 3 5 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1751 221 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9691.[MT7]-RC[CAM]PGGLPGHAGGAAPGRGAAGR.4y13_2.heavy 536.784 / 534.786 7146.0 16.5585994720459 37 14 10 3 10 2.445356714723312 40.89382927157719 0.0503997802734375 3 0.9333132838875414 4.7522488015239714 7146.0 43.251796067775494 0.0 - - - - - - - 282.2857142857143 14 7 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1753 221 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9691.[MT7]-RC[CAM]PGGLPGHAGGAAPGRGAAGR.4b5_1.heavy 536.784 / 672.337 1216.0 16.5585994720459 37 14 10 3 10 2.445356714723312 40.89382927157719 0.0503997802734375 3 0.9333132838875414 4.7522488015239714 1216.0 9.386666666666667 8.0 - - - - - - - 217.14285714285714 2 7 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1755 221 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9691.[MT7]-RC[CAM]PGGLPGHAGGAAPGRGAAGR.4b6_1.heavy 536.784 / 785.421 3497.0 16.5585994720459 37 14 10 3 10 2.445356714723312 40.89382927157719 0.0503997802734375 3 0.9333132838875414 4.7522488015239714 3497.0 10.813092105263157 0.0 - - - - - - - 270.22222222222223 6 9 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1757 222 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9489.[MT7]-LAQLLGEPAETQGTTEAR.2b3_1.heavy 1015.04 / 457.289 45671.0 33.0791015625 43 13 10 10 10 1.7943278829034943 55.73117430365339 0.0 3 0.9003828423555674 3.877236739431894 45671.0 77.27512391782165 0.0 - - - - - - - 637.7142857142857 91 7 GADD45B growth arrest and DNA-damage-inducible, beta 1759 222 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9489.[MT7]-LAQLLGEPAETQGTTEAR.2b4_1.heavy 1015.04 / 570.373 56145.0 33.0791015625 43 13 10 10 10 1.7943278829034943 55.73117430365339 0.0 3 0.9003828423555674 3.877236739431894 56145.0 122.60190834116297 0.0 - - - - - - - 667.5555555555555 112 9 GADD45B growth arrest and DNA-damage-inducible, beta 1761 222 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9489.[MT7]-LAQLLGEPAETQGTTEAR.2b5_1.heavy 1015.04 / 683.457 46015.0 33.0791015625 43 13 10 10 10 1.7943278829034943 55.73117430365339 0.0 3 0.9003828423555674 3.877236739431894 46015.0 85.32520139317144 0.0 - - - - - - - 662.1428571428571 92 7 GADD45B growth arrest and DNA-damage-inducible, beta 1763 222 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9489.[MT7]-LAQLLGEPAETQGTTEAR.2y11_1.heavy 1015.04 / 1160.55 65932.0 33.0791015625 43 13 10 10 10 1.7943278829034943 55.73117430365339 0.0 3 0.9003828423555674 3.877236739431894 65932.0 188.4777539095209 0.0 - - - - - - - 686.5714285714286 131 7 GADD45B growth arrest and DNA-damage-inducible, beta 1765 223 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9690.[MT7]-RPGHDDGQRPSGGAAAAPR.4y15_2.heavy 505.01 / 713.345 5181.0 13.805100440979004 41 11 10 10 10 3.0172142091869056 26.43873433565227 0.0 3 0.8733407867764372 3.4304390445816675 5181.0 21.59130396475771 0.0 - - - - - - - 196.26315789473685 10 19 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1767 223 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9690.[MT7]-RPGHDDGQRPSGGAAAAPR.4y10_1.heavy 505.01 / 854.448 2545.0 13.805100440979004 41 11 10 10 10 3.0172142091869056 26.43873433565227 0.0 3 0.8733407867764372 3.4304390445816675 2545.0 30.771128431040324 0.0 - - - - - - - 261.375 5 8 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1769 223 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9690.[MT7]-RPGHDDGQRPSGGAAAAPR.4y13_2.heavy 505.01 / 598.318 4454.0 13.805100440979004 41 11 10 10 10 3.0172142091869056 26.43873433565227 0.0 3 0.8733407867764372 3.4304390445816675 4454.0 15.991948645413991 0.0 - - - - - - - 236.55 8 20 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1771 223 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9690.[MT7]-RPGHDDGQRPSGGAAAAPR.4y14_2.heavy 505.01 / 655.832 3908.0 13.805100440979004 41 11 10 10 10 3.0172142091869056 26.43873433565227 0.0 3 0.8733407867764372 3.4304390445816675 3908.0 43.33957411010042 0.0 - - - - - - - 206.8181818181818 7 11 CDKN2A cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1773 224 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9487.[MT7]-LTEEC[CAM]DLLIEIIQQR.3y7_1.heavy 673.03 / 899.531 127730.0 45.07419967651367 47 17 10 10 10 4.118012215586974 24.283560797001222 0.0 3 0.973541464096945 7.570371987013097 127730.0 128.2678105263158 0.0 - - - - - - - 187.5 255 8 MID1 midline 1 (Opitz/BBB syndrome) 1775 224 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9487.[MT7]-LTEEC[CAM]DLLIEIIQQR.3y6_1.heavy 673.03 / 786.447 171098.0 45.07419967651367 47 17 10 10 10 4.118012215586974 24.283560797001222 0.0 3 0.973541464096945 7.570371987013097 171098.0 284.2239717647059 0.0 - - - - - - - 250.0 342 6 MID1 midline 1 (Opitz/BBB syndrome) 1777 224 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9487.[MT7]-LTEEC[CAM]DLLIEIIQQR.3b6_1.heavy 673.03 / 892.384 221216.0 45.07419967651367 47 17 10 10 10 4.118012215586974 24.283560797001222 0.0 3 0.973541464096945 7.570371987013097 221216.0 466.1463552 0.0 - - - - - - - 225.0 442 5 MID1 midline 1 (Opitz/BBB syndrome) 1779 224 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9487.[MT7]-LTEEC[CAM]DLLIEIIQQR.3b7_1.heavy 673.03 / 1005.47 133354.0 45.07419967651367 47 17 10 10 10 4.118012215586974 24.283560797001222 0.0 3 0.973541464096945 7.570371987013097 133354.0 251.2108614736842 0.0 - - - - - - - 218.75 266 4 MID1 midline 1 (Opitz/BBB syndrome) 1781 225 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9486.[MT7]-LFWETFHEFPLEK[MT7].3b4_1.heavy 671.024 / 720.384 20332.0 41.56520080566406 46 16 10 10 10 1.6512853346678258 46.19706446877558 0.0 3 0.9634615379225633 6.436591070106452 20332.0 74.38536585365854 0.0 - - - - - - - 309.77777777777777 40 9 HERC3 hect domain and RLD 3 1783 225 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9486.[MT7]-LFWETFHEFPLEK[MT7].3b5_1.heavy 671.024 / 821.431 16725.0 41.56520080566406 46 16 10 10 10 1.6512853346678258 46.19706446877558 0.0 3 0.9634615379225633 6.436591070106452 16725.0 43.64817073170731 0.0 - - - - - - - 315.38461538461536 33 13 HERC3 hect domain and RLD 3 1785 225 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9486.[MT7]-LFWETFHEFPLEK[MT7].3y4_1.heavy 671.024 / 630.394 102972.0 41.56520080566406 46 16 10 10 10 1.6512853346678258 46.19706446877558 0.0 3 0.9634615379225633 6.436591070106452 102972.0 113.3668699186992 0.0 - - - - - - - 360.8 205 5 HERC3 hect domain and RLD 3 1787 225 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9486.[MT7]-LFWETFHEFPLEK[MT7].3y5_1.heavy 671.024 / 777.463 41320.0 41.56520080566406 46 16 10 10 10 1.6512853346678258 46.19706446877558 0.0 3 0.9634615379225633 6.436591070106452 41320.0 75.24943089430894 0.0 - - - - - - - 328.0 82 9 HERC3 hect domain and RLD 3 1789 226 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9485.[MT7]-VFLISGVSLDNC[CAM]VEVGR.3y7_1.heavy 670.027 / 833.393 10264.0 38.946449279785156 41 15 10 6 10 2.929837065881845 34.131590853466534 0.0373992919921875 3 0.9515063009705257 5.5814733152039135 10264.0 1.5498678746696868 1.0 - - - - - - - 289.75 20 4 KLHL9 kelch-like 9 (Drosophila) 1791 226 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9485.[MT7]-VFLISGVSLDNC[CAM]VEVGR.3b3_1.heavy 670.027 / 504.33 20694.0 38.946449279785156 41 15 10 6 10 2.929837065881845 34.131590853466534 0.0373992919921875 3 0.9515063009705257 5.5814733152039135 20694.0 42.52741695756943 0.0 - - - - - - - 331.2 41 5 KLHL9 kelch-like 9 (Drosophila) 1793 226 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9485.[MT7]-VFLISGVSLDNC[CAM]VEVGR.3y8_1.heavy 670.027 / 948.42 14900.0 38.946449279785156 41 15 10 6 10 2.929837065881845 34.131590853466534 0.0373992919921875 3 0.9515063009705257 5.5814733152039135 14900.0 27.88128772635815 1.0 - - - - - - - 386.5 29 6 KLHL9 kelch-like 9 (Drosophila) 1795 226 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9485.[MT7]-VFLISGVSLDNC[CAM]VEVGR.3y5_1.heavy 670.027 / 559.32 12416.0 38.946449279785156 41 15 10 6 10 2.929837065881845 34.131590853466534 0.0373992919921875 3 0.9515063009705257 5.5814733152039135 12416.0 2.7897753080454213 0.0 - - - - - - - 497.0 24 3 KLHL9 kelch-like 9 (Drosophila) 1797 227 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9483.[MT7]-LLLQQVASQEDILLK[MT7].3b6_1.heavy 667.073 / 839.547 59198.0 41.01729965209961 44 14 10 10 10 1.5664333645513702 43.48715396985925 0.0 3 0.947523050558002 5.363648812178006 59198.0 218.31269050464195 0.0 - - - - - - - 231.0 118 10 SMC1B structural maintenance of chromosomes 1B 1799 227 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9483.[MT7]-LLLQQVASQEDILLK[MT7].3y3_1.heavy 667.073 / 517.383 139832.0 41.01729965209961 44 14 10 10 10 1.5664333645513702 43.48715396985925 0.0 3 0.947523050558002 5.363648812178006 139832.0 300.63449161612556 0.0 - - - - - - - 315.0 279 11 SMC1B structural maintenance of chromosomes 1B 1801 227 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9483.[MT7]-LLLQQVASQEDILLK[MT7].3b4_1.heavy 667.073 / 612.42 91352.0 41.01729965209961 44 14 10 10 10 1.5664333645513702 43.48715396985925 0.0 3 0.947523050558002 5.363648812178006 91352.0 151.98946273830154 0.0 - - - - - - - 345.0 182 11 SMC1B structural maintenance of chromosomes 1B 1803 227 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9483.[MT7]-LLLQQVASQEDILLK[MT7].3b5_1.heavy 667.073 / 740.479 109656.0 41.01729965209961 44 14 10 10 10 1.5664333645513702 43.48715396985925 0.0 3 0.947523050558002 5.363648812178006 109656.0 197.74533911700917 0.0 - - - - - - - 330.0 219 2 SMC1B structural maintenance of chromosomes 1B 1805 228 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9481.[MT7]-IQAQFAQLAQLSPQER.2y4_1.heavy 986.54 / 529.273 10453.0 35.314826011657715 43 17 10 6 10 5.205678016571389 19.209793552668266 0.032497406005859375 3 0.9753117457761108 7.838258999306001 10453.0 61.192444526590265 0.0 - - - - - - - 184.5 20 12 STAT5A signal transducer and activator of transcription 5A 1807 228 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9481.[MT7]-IQAQFAQLAQLSPQER.2y8_1.heavy 986.54 / 928.485 8553.0 35.314826011657715 43 17 10 6 10 5.205678016571389 19.209793552668266 0.032497406005859375 3 0.9753117457761108 7.838258999306001 8553.0 41.20890214178981 0.0 - - - - - - - 260.07142857142856 17 14 STAT5A signal transducer and activator of transcription 5A 1809 228 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9481.[MT7]-IQAQFAQLAQLSPQER.2y9_1.heavy 986.54 / 1041.57 6019.0 35.314826011657715 43 17 10 6 10 5.205678016571389 19.209793552668266 0.032497406005859375 3 0.9753117457761108 7.838258999306001 6019.0 51.374086571097706 0.0 - - - - - - - 244.54545454545453 12 11 STAT5A signal transducer and activator of transcription 5A 1811 228 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9481.[MT7]-IQAQFAQLAQLSPQER.2y11_1.heavy 986.54 / 1240.66 6019.0 35.314826011657715 43 17 10 6 10 5.205678016571389 19.209793552668266 0.032497406005859375 3 0.9753117457761108 7.838258999306001 6019.0 53.84605139160643 0.0 - - - - - - - 184.44444444444446 12 18 STAT5A signal transducer and activator of transcription 5A 1813 229 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9697.[MT7]-DNWSPALTISK[MT7].2b3_1.heavy 760.422 / 560.258 6729.0 31.27887487411499 40 16 10 6 8 2.7287859140291895 29.46124887116944 0.03989982604980469 4 0.9646700178746109 6.546416950809953 6729.0 14.151520922451187 0.0 - - - - - - - 705.0 13 9 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1815 229 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9697.[MT7]-DNWSPALTISK[MT7].2y4_1.heavy 760.422 / 592.379 4999.0 31.27887487411499 40 16 10 6 8 2.7287859140291895 29.46124887116944 0.03989982604980469 4 0.9646700178746109 6.546416950809953 4999.0 8.251234470159442 0.0 - - - - - - - 279.72727272727275 9 11 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1817 229 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9697.[MT7]-DNWSPALTISK[MT7].2b4_1.heavy 760.422 / 647.291 11151.0 31.27887487411499 40 16 10 6 8 2.7287859140291895 29.46124887116944 0.03989982604980469 4 0.9646700178746109 6.546416950809953 11151.0 14.147075648697582 1.0 - - - - - - - 745.0 26 8 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1819 229 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9697.[MT7]-DNWSPALTISK[MT7].2y7_1.heavy 760.422 / 873.553 15958.0 31.27887487411499 40 16 10 6 8 2.7287859140291895 29.46124887116944 0.03989982604980469 4 0.9646700178746109 6.546416950809953 15958.0 27.248286888146165 0.0 - - - - - - - 219.57142857142858 31 7 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1821 230 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9696.[MT7]-ESVQQEPER.2y8_1.heavy 623.313 / 972.474 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1823 230 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9696.[MT7]-ESVQQEPER.2b4_1.heavy 623.313 / 588.311 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1825 230 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9696.[MT7]-ESVQQEPER.2b6_1.heavy 623.313 / 845.412 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1827 230 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9696.[MT7]-ESVQQEPER.2y6_1.heavy 623.313 / 786.374 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1829 231 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9695.[MT7]-GDNIYEWR.2y4_1.heavy 598.794 / 653.304 3835.0 29.59670066833496 50 20 10 10 10 5.996157893089213 16.677346024402322 0.0 3 0.9934190876569376 15.204805103026404 3835.0 5.101330203442879 4.0 - - - - - - - 372.75 16 8 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1831 231 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9695.[MT7]-GDNIYEWR.2b4_1.heavy 598.794 / 544.285 8735.0 29.59670066833496 50 20 10 10 10 5.996157893089213 16.677346024402322 0.0 3 0.9934190876569376 15.204805103026404 8735.0 9.052557838498569 0.0 - - - - - - - 1242.5 17 12 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1833 231 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9695.[MT7]-GDNIYEWR.2b6_1.heavy 598.794 / 836.391 4474.0 29.59670066833496 50 20 10 10 10 5.996157893089213 16.677346024402322 0.0 3 0.9934190876569376 15.204805103026404 4474.0 3.737598880344124 1.0 - - - - - - - 327.6923076923077 14 13 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1835 231 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9695.[MT7]-GDNIYEWR.2y6_1.heavy 598.794 / 880.431 4900.0 29.59670066833496 50 20 10 10 10 5.996157893089213 16.677346024402322 0.0 3 0.9934190876569376 15.204805103026404 4900.0 24.69170579029734 0.0 - - - - - - - 355.0 9 6 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1837 232 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9694.[MT7]-EQVQPK[MT7].2y4_1.heavy 508.803 / 615.395 2306.0 15.251899719238281 41 12 9 10 10 1.4655174973920615 53.154238591039 0.0 3 0.8808497761130852 3.539201850790187 2306.0 11.481185568761765 1.0 - - - - - - - 258.8181818181818 4 11 UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1839 232 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9694.[MT7]-EQVQPK[MT7].2b3_1.heavy 508.803 / 501.279 3527.0 15.251899719238281 41 12 9 10 10 1.4655174973920615 53.154238591039 0.0 3 0.8808497761130852 3.539201850790187 3527.0 9.272979741257222 2.0 - - - - - - - 234.27272727272728 7 11 UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1841 232 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9694.[MT7]-EQVQPK[MT7].2y5_1.heavy 508.803 / 743.453 2035.0 15.251899719238281 41 12 9 10 10 1.4655174973920615 53.154238591039 0.0 3 0.8808497761130852 3.539201850790187 2035.0 17.32648954609468 6.0 - - - - - - - 203.58333333333334 16 12 UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1843 232 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9694.[MT7]-EQVQPK[MT7].2b4_1.heavy 508.803 / 629.338 6918.0 15.251899719238281 41 12 9 10 10 1.4655174973920615 53.154238591039 0.0 3 0.8808497761130852 3.539201850790187 6918.0 58.51934026649334 0.0 - - - - - - - 217.1 13 10 UBE2E2 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1845 233 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9188.[MT7]-LFLQSGGK[MT7].2b3_1.heavy 569.347 / 518.346 13123.0 28.761199951171875 50 20 10 10 10 6.365901725839415 15.70869364729533 0.0 3 0.9950365675930518 17.510216567348092 13123.0 8.061271428571429 0.0 - - - - - - - 364.3333333333333 26 3 WEE2 WEE1 homolog 2 (S. pombe) 1847 233 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9188.[MT7]-LFLQSGGK[MT7].2y5_1.heavy 569.347 / 620.348 28215.0 28.761199951171875 50 20 10 10 10 6.365901725839415 15.70869364729533 0.0 3 0.9950365675930518 17.510216567348092 28215.0 28.376818342151676 0.0 - - - - - - - 812.4285714285714 56 7 WEE2 WEE1 homolog 2 (S. pombe) 1849 233 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9188.[MT7]-LFLQSGGK[MT7].2y1_1.heavy 569.347 / 291.215 N/A 28.761199951171875 50 20 10 10 10 6.365901725839415 15.70869364729533 0.0 3 0.9950365675930518 17.510216567348092 7655.0 0.9825068884288147 33.0 - - - - - - - 1969.0 50 1 WEE2 WEE1 homolog 2 (S. pombe) 1851 233 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9188.[MT7]-LFLQSGGK[MT7].2y7_1.heavy 569.347 / 880.501 24060.0 28.761199951171875 50 20 10 10 10 6.365901725839415 15.70869364729533 0.0 3 0.9950365675930518 17.510216567348092 24060.0 25.04843112113444 0.0 - - - - - - - 298.27272727272725 48 11 WEE2 WEE1 homolog 2 (S. pombe) 1853 234 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9041.[MT7]-DQEAK[MT7].2b3_1.heavy 439.745 / 517.237 10708.0 12.53737497329712 30 16 2 6 6 3.935845108051699 25.407503917119712 0.032599449157714844 6 0.9679394359931345 6.874001130656066 10708.0 34.063746707782286 2.0 - - - - - - - 188.8 36 45 FKBP9;ODF2L;MRPL40;CDC25C FK506 binding protein 9, 63 kDa;outer dense fiber of sperm tails 2-like;mitochondrial ribosomal protein L40;cell division cycle 25 homolog C (S. pombe) 1855 234 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9041.[MT7]-DQEAK[MT7].2y4_1.heavy 439.745 / 619.353 16275.0 12.53737497329712 30 16 2 6 6 3.935845108051699 25.407503917119712 0.032599449157714844 6 0.9679394359931345 6.874001130656066 16275.0 41.7914994899694 0.0 - - - - - - - 202.3684210526316 32 38 FKBP9;ODF2L;MRPL40;CDC25C FK506 binding protein 9, 63 kDa;outer dense fiber of sperm tails 2-like;mitochondrial ribosomal protein L40;cell division cycle 25 homolog C (S. pombe) 1857 234 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9041.[MT7]-DQEAK[MT7].2b4_1.heavy 439.745 / 588.275 9152.0 12.53737497329712 30 16 2 6 6 3.935845108051699 25.407503917119712 0.032599449157714844 6 0.9679394359931345 6.874001130656066 9152.0 16.167057722740456 3.0 - - - - - - - 595.5 27 8 FKBP9;ODF2L;MRPL40;CDC25C FK506 binding protein 9, 63 kDa;outer dense fiber of sperm tails 2-like;mitochondrial ribosomal protein L40;cell division cycle 25 homolog C (S. pombe) 1859 234 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9041.[MT7]-DQEAK[MT7].2y3_1.heavy 439.745 / 491.295 7453.0 12.53737497329712 30 16 2 6 6 3.935845108051699 25.407503917119712 0.032599449157714844 6 0.9679394359931345 6.874001130656066 7453.0 9.033939393939395 1.0 - - - - - - - 177.04545454545453 76 44 FKBP9;ODF2L;MRPL40;CDC25C FK506 binding protein 9, 63 kDa;outer dense fiber of sperm tails 2-like;mitochondrial ribosomal protein L40;cell division cycle 25 homolog C (S. pombe) 1861 235 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9048.[MT7]-IVDMK[MT7].2b3_1.heavy 447.272 / 472.289 38963.0 24.30419921875 48 18 10 10 10 5.512636037536015 18.140141906538247 0.0 3 0.9829117631619985 9.427430770535013 38963.0 67.62337927514038 0.0 - - - - - - - 362.6666666666667 77 9 CHEK1 CHK1 checkpoint homolog (S. pombe) 1863 235 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9048.[MT7]-IVDMK[MT7].2y4_1.heavy 447.272 / 636.351 48540.0 24.30419921875 48 18 10 10 10 5.512636037536015 18.140141906538247 0.0 3 0.9829117631619985 9.427430770535013 48540.0 90.68421637599263 0.0 - - - - - - - 684.1428571428571 97 7 CHEK1 CHK1 checkpoint homolog (S. pombe) 1865 235 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9048.[MT7]-IVDMK[MT7].2y3_1.heavy 447.272 / 537.282 25467.0 24.30419921875 48 18 10 10 10 5.512636037536015 18.140141906538247 0.0 3 0.9829117631619985 9.427430770535013 25467.0 81.93251158003088 0.0 - - - - - - - 326.5 50 8 CHEK1 CHK1 checkpoint homolog (S. pombe) 1867 235 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9048.[MT7]-IVDMK[MT7].2y2_1.heavy 447.272 / 422.255 82714.0 24.30419921875 48 18 10 10 10 5.512636037536015 18.140141906538247 0.0 3 0.9829117631619985 9.427430770535013 82714.0 202.22790251490795 0.0 - - - - - - - 280.0 165 7 CHEK1 CHK1 checkpoint homolog (S. pombe) 1869 236 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9045.[MT7]-TAAPNLR.2y4_1.heavy 443.765 / 499.299 25389.0 18.827800750732422 48 18 10 10 10 8.776345716050594 11.394263994992276 0.0 3 0.9808359550258657 8.90067122782279 25389.0 35.25116690233141 0.0 - - - - - - - 1158.7142857142858 50 7 SMC1B structural maintenance of chromosomes 1B 1871 236 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9045.[MT7]-TAAPNLR.2y5_1.heavy 443.765 / 570.336 14987.0 18.827800750732422 48 18 10 10 10 8.776345716050594 11.394263994992276 0.0 3 0.9808359550258657 8.90067122782279 14987.0 11.911857261164664 0.0 - - - - - - - 626.7777777777778 29 9 SMC1B structural maintenance of chromosomes 1B 1873 236 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9045.[MT7]-TAAPNLR.2y6_1.heavy 443.765 / 641.373 67881.0 18.827800750732422 48 18 10 10 10 8.776345716050594 11.394263994992276 0.0 3 0.9808359550258657 8.90067122782279 67881.0 52.47134120982986 0.0 - - - - - - - 264.5 135 2 SMC1B structural maintenance of chromosomes 1B 1875 236 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9045.[MT7]-TAAPNLR.2b5_1.heavy 443.765 / 599.327 15868.0 18.827800750732422 48 18 10 10 10 8.776345716050594 11.394263994992276 0.0 3 0.9808359550258657 8.90067122782279 15868.0 30.381277132016784 0.0 - - - - - - - 282.2 31 5 SMC1B structural maintenance of chromosomes 1B 1877 237 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9044.[MT7]-DREYTDIIR.3b6_2.heavy 442.237 / 462.713 12448.0 24.715499877929688 28 13 2 5 8 3.395502765682877 23.18124746735773 0.04019927978515625 4 0.910814487437287 4.101411739767688 12448.0 40.71948741418764 0.0 - - - - - - - 388.3333333333333 24 9 CDC34 cell division cycle 34 homolog (S. cerevisiae) 1879 237 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9044.[MT7]-DREYTDIIR.3b6_1.heavy 442.237 / 924.418 437.0 24.715499877929688 28 13 2 5 8 3.395502765682877 23.18124746735773 0.04019927978515625 4 0.910814487437287 4.101411739767688 437.0 -0.8 1.0 - - - - - - - 0.0 0 0 CDC34 cell division cycle 34 homolog (S. cerevisiae) 1881 237 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9044.[MT7]-DREYTDIIR.3y4_1.heavy 442.237 / 516.314 3494.0 24.715499877929688 28 13 2 5 8 3.395502765682877 23.18124746735773 0.04019927978515625 4 0.910814487437287 4.101411739767688 3494.0 0.37991229510748514 3.0 - - - - - - - 364.0 51 3 CDC34 cell division cycle 34 homolog (S. cerevisiae) 1883 237 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9044.[MT7]-DREYTDIIR.3y5_1.heavy 442.237 / 617.362 3276.0 24.715499877929688 28 13 2 5 8 3.395502765682877 23.18124746735773 0.04019927978515625 4 0.910814487437287 4.101411739767688 3276.0 3.2713996917138086 1.0 - - - - - - - 249.28571428571428 6 7 CDC34 cell division cycle 34 homolog (S. cerevisiae) 1885 238 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9047.[MT7]-TQLDDR.2y4_1.heavy 446.236 / 518.257 1976.0 16.326199531555176 42 17 10 5 10 9.461344023147376 10.569322894860171 0.04780006408691406 3 0.9721890820157569 7.38317266972458 1976.0 4.55 2.0 - - - - - - - 380.0 12 10 STAG2 stromal antigen 2 1887 238 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9047.[MT7]-TQLDDR.2b5_1.heavy 446.236 / 717.354 6535.0 16.326199531555176 42 17 10 5 10 9.461344023147376 10.569322894860171 0.04780006408691406 3 0.9721890820157569 7.38317266972458 6535.0 20.063596491228072 1.0 - - - - - - - 760.0 13 7 STAG2 stromal antigen 2 1889 238 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9047.[MT7]-TQLDDR.2y5_1.heavy 446.236 / 646.315 10638.0 16.326199531555176 42 17 10 5 10 9.461344023147376 10.569322894860171 0.04780006408691406 3 0.9721890820157569 7.38317266972458 10638.0 45.49144736842105 0.0 - - - - - - - 354.6666666666667 21 6 STAG2 stromal antigen 2 1891 238 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9047.[MT7]-TQLDDR.2b4_1.heavy 446.236 / 602.327 23251.0 16.326199531555176 42 17 10 5 10 9.461344023147376 10.569322894860171 0.04780006408691406 3 0.9721890820157569 7.38317266972458 23251.0 64.62860197368421 0.0 - - - - - - - 323.0 46 8 STAG2 stromal antigen 2 1893 239 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9185.[MT7]-VWSAVTGK[MT7].2y5_1.heavy 568.339 / 619.39 29959.0 28.233699798583984 48 18 10 10 10 4.603526908467469 21.722475395129244 0.0 3 0.9812195160337053 8.991392144834425 29959.0 54.99230855855856 0.0 - - - - - - - 305.25 59 8 FBXW7 F-box and WD repeat domain containing 7 1895 239 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9185.[MT7]-VWSAVTGK[MT7].2b4_1.heavy 568.339 / 588.326 22636.0 28.233699798583984 48 18 10 10 10 4.603526908467469 21.722475395129244 0.0 3 0.9812195160337053 8.991392144834425 22636.0 61.688198198198194 0.0 - - - - - - - 370.0 45 9 FBXW7 F-box and WD repeat domain containing 7 1897 239 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9185.[MT7]-VWSAVTGK[MT7].2y6_1.heavy 568.339 / 706.422 41277.0 28.233699798583984 48 18 10 10 10 4.603526908467469 21.722475395129244 0.0 3 0.9812195160337053 8.991392144834425 41277.0 15.23457811708898 0.0 - - - - - - - 296.0 82 3 FBXW7 F-box and WD repeat domain containing 7 1899 239 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9185.[MT7]-VWSAVTGK[MT7].2y7_1.heavy 568.339 / 892.501 74565.0 28.233699798583984 48 18 10 10 10 4.603526908467469 21.722475395129244 0.0 3 0.9812195160337053 8.991392144834425 74565.0 197.9530475017838 0.0 - - - - - - - 333.0 149 10 FBXW7 F-box and WD repeat domain containing 7 1901 240 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9054.[MT7]-ETIQK[MT7].2b3_1.heavy 453.779 / 488.284 12742.0 17.294599533081055 50 20 10 10 10 11.582453582266684 8.633749256125231 0.0 3 0.9990895458195657 40.8978395375218 12742.0 51.38979995236961 0.0 - - - - - - - 274.4 25 10 SMC1B;APOB;TPR;PPFIBP1 structural maintenance of chromosomes 1B;apolipoprotein B (including Ag(x) antigen);translocated promoter region (to activated MET oncogene);PTPRF interacting protein, binding protein 1 (liprin beta 1) 1903 240 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9054.[MT7]-ETIQK[MT7].2y4_1.heavy 453.779 / 633.405 53065.0 17.294599533081055 50 20 10 10 10 11.582453582266684 8.633749256125231 0.0 3 0.9990895458195657 40.8978395375218 53065.0 113.71515365019874 0.0 - - - - - - - 387.4 106 5 SMC1B;APOB;TPR;PPFIBP1 structural maintenance of chromosomes 1B;apolipoprotein B (including Ag(x) antigen);translocated promoter region (to activated MET oncogene);PTPRF interacting protein, binding protein 1 (liprin beta 1) 1905 240 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9054.[MT7]-ETIQK[MT7].2b4_1.heavy 453.779 / 616.342 10000.0 17.294599533081055 50 20 10 10 10 11.582453582266684 8.633749256125231 0.0 3 0.9990895458195657 40.8978395375218 10000.0 17.89937337773 0.0 - - - - - - - 760.2857142857143 20 7 SMC1B;APOB;TPR;PPFIBP1 structural maintenance of chromosomes 1B;apolipoprotein B (including Ag(x) antigen);translocated promoter region (to activated MET oncogene);PTPRF interacting protein, binding protein 1 (liprin beta 1) 1907 240 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9054.[MT7]-ETIQK[MT7].2y3_1.heavy 453.779 / 532.357 17581.0 17.294599533081055 50 20 10 10 10 11.582453582266684 8.633749256125231 0.0 3 0.9990895458195657 40.8978395375218 17581.0 26.248729226728166 0.0 - - - - - - - 829.2857142857143 35 7 SMC1B;APOB;TPR;PPFIBP1 structural maintenance of chromosomes 1B;apolipoprotein B (including Ag(x) antigen);translocated promoter region (to activated MET oncogene);PTPRF interacting protein, binding protein 1 (liprin beta 1) 1909 241 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9051.[MT7]-ALPLSPR.2y5_1.heavy 449.286 / 569.341 32847.0 25.71952533721924 32 20 0 6 6 14.447145289415372 6.921782677250743 0.039699554443359375 5 0.9990567812906227 40.18111872970804 32847.0 16.109465890886018 1.0 - - - - - - - 337.5 65 2 CDC6 cell division cycle 6 homolog (S. cerevisiae) 1911 241 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9051.[MT7]-ALPLSPR.2b4_1.heavy 449.286 / 539.367 3375.0 25.71952533721924 32 20 0 6 6 14.447145289415372 6.921782677250743 0.039699554443359375 5 0.9990567812906227 40.18111872970804 3375.0 1.1999999999999997 2.0 - - - - - - - 337.5 16 2 CDC6 cell division cycle 6 homolog (S. cerevisiae) 1913 241 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9051.[MT7]-ALPLSPR.2y6_1.heavy 449.286 / 682.425 13274.0 25.71952533721924 32 20 0 6 6 14.447145289415372 6.921782677250743 0.039699554443359375 5 0.9990567812906227 40.18111872970804 13274.0 48.53367703703704 1.0 - - - - - - - 353.57142857142856 31 7 CDC6 cell division cycle 6 homolog (S. cerevisiae) 1915 241 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9051.[MT7]-ALPLSPR.2b5_1.heavy 449.286 / 626.399 2700.0 25.71952533721924 32 20 0 6 6 14.447145289415372 6.921782677250743 0.039699554443359375 5 0.9990567812906227 40.18111872970804 2700.0 5.314285714285715 4.0 - - - - - - - 365.625 242 8 CDC6 cell division cycle 6 homolog (S. cerevisiae) 1917 242 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9193.[MT7]-FLSTVLGK[MT7].2y4_1.heavy 576.865 / 560.389 65506.0 35.08319854736328 48 18 10 10 10 3.6941685057998104 21.44709916080989 0.0 3 0.9854131471490059 10.205921780283976 65506.0 76.90431865828091 0.0 - - - - - - - 795.0 131 11 SHC4 SHC (Src homology 2 domain containing) family, member 4 1919 242 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9193.[MT7]-FLSTVLGK[MT7].2y5_1.heavy 576.865 / 661.437 66460.0 35.08319854736328 48 18 10 10 10 3.6941685057998104 21.44709916080989 0.0 3 0.9854131471490059 10.205921780283976 66460.0 120.91778975741241 0.0 - - - - - - - 363.42857142857144 132 7 SHC4 SHC (Src homology 2 domain containing) family, member 4 1921 242 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9193.[MT7]-FLSTVLGK[MT7].2y6_1.heavy 576.865 / 748.469 126241.0 35.08319854736328 48 18 10 10 10 3.6941685057998104 21.44709916080989 0.0 3 0.9854131471490059 10.205921780283976 126241.0 242.00772254475083 0.0 - - - - - - - 795.0 252 8 SHC4 SHC (Src homology 2 domain containing) family, member 4 1923 242 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9193.[MT7]-FLSTVLGK[MT7].2y7_1.heavy 576.865 / 861.553 91899.0 35.08319854736328 48 18 10 10 10 3.6941685057998104 21.44709916080989 0.0 3 0.9854131471490059 10.205921780283976 91899.0 316.0505917667238 0.0 - - - - - - - 265.0 183 6 SHC4 SHC (Src homology 2 domain containing) family, member 4 1925 243 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9191.[MT7]-LELLLQK[MT7].2y4_1.heavy 572.881 / 645.442 49251.0 35.50149917602539 44 14 10 10 10 1.9326244206213754 41.868316147904515 0.0 3 0.9407819894221875 5.04624854249611 49251.0 66.872040324002 0.0 - - - - - - - 741.5714285714286 98 7 STAG1;STAG2 stromal antigen 1;stromal antigen 2 1927 243 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9191.[MT7]-LELLLQK[MT7].2b3_1.heavy 572.881 / 500.32 56961.0 35.50149917602539 44 14 10 10 10 1.9326244206213754 41.868316147904515 0.0 3 0.9407819894221875 5.04624854249611 56961.0 140.89399894067796 0.0 - - - - - - - 899.1428571428571 113 7 STAG1;STAG2 stromal antigen 1;stromal antigen 2 1929 243 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9191.[MT7]-LELLLQK[MT7].2y3_1.heavy 572.881 / 532.357 76001.0 35.50149917602539 44 14 10 10 10 1.9326244206213754 41.868316147904515 0.0 3 0.9407819894221875 5.04624854249611 76001.0 131.15522252497726 0.0 - - - - - - - 1227.2 152 10 STAG1;STAG2 stromal antigen 1;stromal antigen 2 1931 243 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9191.[MT7]-LELLLQK[MT7].2y6_1.heavy 572.881 / 887.568 42800.0 35.50149917602539 44 14 10 10 10 1.9326244206213754 41.868316147904515 0.0 3 0.9407819894221875 5.04624854249611 42800.0 149.48910411622276 0.0 - - - - - - - 764.1428571428571 85 7 STAG1;STAG2 stromal antigen 1;stromal antigen 2 1933 244 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9190.[MT7]-GLLDVLPK[MT7].2b4_1.heavy 571.873 / 543.326 50666.0 35.741275787353516 40 14 10 6 10 2.0306326384324245 49.2457365785258 0.0308990478515625 3 0.9323213932153496 4.7168962457081145 50666.0 46.068443629697526 1.0 - - - - - - - 343.2 101 5 UBR5;LOC730429 ubiquitin protein ligase E3 component n-recognin 5;e3 ubiquitin-protein ligase UBR5-like 1935 244 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9190.[MT7]-GLLDVLPK[MT7].2b6_1.heavy 571.873 / 755.478 26502.0 35.741275787353516 40 14 10 6 10 2.0306326384324245 49.2457365785258 0.0308990478515625 3 0.9323213932153496 4.7168962457081145 26502.0 31.638883191802787 0.0 - - - - - - - 374.4 53 10 UBR5;LOC730429 ubiquitin protein ligase E3 component n-recognin 5;e3 ubiquitin-protein ligase UBR5-like 1937 244 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9190.[MT7]-GLLDVLPK[MT7].2y3_1.heavy 571.873 / 501.352 17460.0 35.741275787353516 40 14 10 6 10 2.0306326384324245 49.2457365785258 0.0308990478515625 3 0.9323213932153496 4.7168962457081145 17460.0 3.9198203976908275 1.0 - - - - - - - 364.0 34 9 UBR5;LOC730429 ubiquitin protein ligase E3 component n-recognin 5;e3 ubiquitin-protein ligase UBR5-like 1939 244 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9190.[MT7]-GLLDVLPK[MT7].2b5_1.heavy 571.873 / 642.394 27282.0 35.741275787353516 40 14 10 6 10 2.0306326384324245 49.2457365785258 0.0308990478515625 3 0.9323213932153496 4.7168962457081145 27282.0 35.73760150191363 0.0 - - - - - - - 234.0 54 8 UBR5;LOC730429 ubiquitin protein ligase E3 component n-recognin 5;e3 ubiquitin-protein ligase UBR5-like 1941 245 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9059.[MT7]-DSGHAGAR.2b4_1.heavy 457.732 / 541.249 2364.0 11.23122501373291 50 20 10 10 10 18.469302737398387 5.414389564231387 0.008899688720703125 3 0.9991156104334967 41.496221410407536 2364.0 0.0 0.0 - - - - - - - 57.726027397260275 4 73 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1943 245 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9059.[MT7]-DSGHAGAR.2y6_1.heavy 457.732 / 568.295 3454.0 11.23122501373291 50 20 10 10 10 18.469302737398387 5.414389564231387 0.008899688720703125 3 0.9991156104334967 41.496221410407536 3454.0 10.310447761194027 0.0 - - - - - - - 62.78947368421053 6 76 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1945 245 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9059.[MT7]-DSGHAGAR.2b5_1.heavy 457.732 / 612.286 1526.0 11.23122501373291 50 20 10 10 10 18.469302737398387 5.414389564231387 0.008899688720703125 3 0.9991156104334967 41.496221410407536 1526.0 3.0822178217821774 1.0 - - - - - - - 66.96969696969697 3 66 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1947 245 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9059.[MT7]-DSGHAGAR.2y7_1.heavy 457.732 / 655.327 11737.0 11.23122501373291 50 20 10 10 10 18.469302737398387 5.414389564231387 0.008899688720703125 3 0.9991156104334967 41.496221410407536 11737.0 9.988936170212764 0.0 - - - - - - - 100.21739130434783 23 69 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 1949 246 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9194.[MT7]-GVVTAEMFR.2y8_1.heavy 577.311 / 952.492 8188.0 30.837349891662598 40 15 10 5 10 3.3273131035439376 30.054280101710148 0.04110145568847656 3 0.9549835493024043 5.794739668189827 8188.0 52.45245112781955 0.0 - - - - - - - 274.625 16 8 STAG2 stromal antigen 2 1951 246 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9194.[MT7]-GVVTAEMFR.2b6_1.heavy 577.311 / 701.395 17374.0 30.837349891662598 40 15 10 5 10 3.3273131035439376 30.054280101710148 0.04110145568847656 3 0.9549835493024043 5.794739668189827 17374.0 24.671156606203816 0.0 - - - - - - - 778.8 34 10 STAG2 stromal antigen 2 1953 246 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9194.[MT7]-GVVTAEMFR.2y6_1.heavy 577.311 / 754.355 26560.0 30.837349891662598 40 15 10 5 10 3.3273131035439376 30.054280101710148 0.04110145568847656 3 0.9549835493024043 5.794739668189827 26560.0 72.7052120660007 0.0 - - - - - - - 256.85714285714283 53 7 STAG2 stromal antigen 2 1955 246 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9194.[MT7]-GVVTAEMFR.2y7_1.heavy 577.311 / 853.424 22766.0 30.837349891662598 40 15 10 5 10 3.3273131035439376 30.054280101710148 0.04110145568847656 3 0.9549835493024043 5.794739668189827 22766.0 53.215442169815425 0.0 - - - - - - - 288.44444444444446 45 9 STAG2 stromal antigen 2 1957 247 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A499.[MT7]-AFLDGFNEVAPLEWLR.3y7_1.heavy 674.359 / 884.499 17590.0 47.75589942932129 44 18 10 6 10 5.802288020960927 17.234580503199293 0.038600921630859375 3 0.9831412883145736 9.491571995275445 17590.0 82.5269000690237 0.0 - - - - - - - 260.22222222222223 35 18 WWP2 WW domain containing E3 ubiquitin protein ligase 2 1959 247 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A499.[MT7]-AFLDGFNEVAPLEWLR.3y6_1.heavy 674.359 / 813.462 24926.0 47.75589942932129 44 18 10 6 10 5.802288020960927 17.234580503199293 0.038600921630859375 3 0.9831412883145736 9.491571995275445 24926.0 85.29103568690913 0.0 - - - - - - - 631.4285714285714 49 7 WWP2 WW domain containing E3 ubiquitin protein ligase 2 1961 247 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A499.[MT7]-AFLDGFNEVAPLEWLR.3b4_1.heavy 674.359 / 591.326 8044.0 47.75589942932129 44 18 10 6 10 5.802288020960927 17.234580503199293 0.038600921630859375 3 0.9831412883145736 9.491571995275445 8044.0 38.42065444691566 0.0 - - - - - - - 235.73333333333332 16 15 WWP2 WW domain containing E3 ubiquitin protein ligase 2 1963 247 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A499.[MT7]-AFLDGFNEVAPLEWLR.3b5_1.heavy 674.359 / 648.347 10872.0 47.75589942932129 44 18 10 6 10 5.802288020960927 17.234580503199293 0.038600921630859375 3 0.9831412883145736 9.491571995275445 10872.0 28.38701540215937 0.0 - - - - - - - 287.3125 21 16 WWP2 WW domain containing E3 ubiquitin protein ligase 2 1965 248 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 ODP2_ECOLI.AEAPAAAPAAK.2y7.peptide 484.26 / 599.35 194609.0 14.965200424194336 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 194609.0 405.21936561932694 0.0 - - - - - - - 163.75 389 4 1967 248 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 ODP2_ECOLI.AEAPAAAPAAK.2y8.peptide 484.26 / 696.4 305027.0 14.965200424194336 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 305027.0 1089.762127497352 0.0 - - - - - - - 1311.2857142857142 610 7 1969 248 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 ODP2_ECOLI.AEAPAAAPAAK.2y6.peptide 484.26 / 528.31 140318.0 14.965200424194336 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 140318.0 240.29698911614815 0.0 - - - - - - - 294.75 280 4 1971 249 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10685.[MT7]-SVVC[CAM]GSLFHTPK[MT7].3b6_1.heavy 540.632 / 734.362 7122.0 28.233699798583984 50 20 10 10 10 5.021390382664274 19.914802948848106 0.0 3 0.9900804247053399 12.381012855799986 7122.0 16.956857633048507 0.0 - - - - - - - 311.8 14 10 BRCA2 breast cancer 2, early onset 1973 249 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10685.[MT7]-SVVC[CAM]GSLFHTPK[MT7].3b4_1.heavy 540.632 / 590.309 2893.0 28.233699798583984 50 20 10 10 10 5.021390382664274 19.914802948848106 0.0 3 0.9900804247053399 12.381012855799986 2893.0 3.1360912050637513 0.0 - - - - - - - 297.0 5 6 BRCA2 breast cancer 2, early onset 1975 249 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10685.[MT7]-SVVC[CAM]GSLFHTPK[MT7].3b8_1.heavy 540.632 / 994.515 1558.0 28.233699798583984 50 20 10 10 10 5.021390382664274 19.914802948848106 0.0 3 0.9900804247053399 12.381012855799986 1558.0 1.9256179775280897 1.0 - - - - - - - 260.0 3 6 BRCA2 breast cancer 2, early onset 1977 249 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10685.[MT7]-SVVC[CAM]GSLFHTPK[MT7].3b7_1.heavy 540.632 / 847.446 4229.0 28.233699798583984 50 20 10 10 10 5.021390382664274 19.914802948848106 0.0 3 0.9900804247053399 12.381012855799986 4229.0 4.344223795993134 0.0 - - - - - - - 289.6 8 10 BRCA2 breast cancer 2, early onset 1979 250 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10683.[MT7]-SYFSNHDESLK[MT7].3b5_1.heavy 538.938 / 743.348 2963.0 23.89650058746338 33 15 8 6 4 2.1937185656112064 36.1439975875827 0.03940010070800781 7 0.957877964973456 5.991993575929206 2963.0 2.7985832349468716 1.0 - - - - - - - 275.3 13 10 BRCA2 breast cancer 2, early onset 1981 250 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10683.[MT7]-SYFSNHDESLK[MT7].3b3_1.heavy 538.938 / 542.273 1270.0 23.89650058746338 33 15 8 6 4 2.1937185656112064 36.1439975875827 0.03940010070800781 7 0.957877964973456 5.991993575929206 1270.0 0.09976387249114527 28.0 - - - - - - - 1296.5 4 8 BRCA2 breast cancer 2, early onset 1983 250 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10683.[MT7]-SYFSNHDESLK[MT7].3y4_1.heavy 538.938 / 620.374 5080.0 23.89650058746338 33 15 8 6 4 2.1937185656112064 36.1439975875827 0.03940010070800781 7 0.957877964973456 5.991993575929206 5080.0 5.921361058601134 2.0 - - - - - - - 1175.7777777777778 15 9 BRCA2 breast cancer 2, early onset 1985 250 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10683.[MT7]-SYFSNHDESLK[MT7].3y5_1.heavy 538.938 / 735.401 6774.0 23.89650058746338 33 15 8 6 4 2.1937185656112064 36.1439975875827 0.03940010070800781 7 0.957877964973456 5.991993575929206 6774.0 11.128303767322091 3.0 - - - - - - - 365.45454545454544 18 11 BRCA2 breast cancer 2, early onset 1987 251 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10688.[MT7]-IFHEANADEC[CAM]EK[MT7].3y3_1.heavy 584.282 / 580.288 9184.0 21.852600574493408 44 18 10 6 10 2.7510920267722496 29.132554787852015 0.03600120544433594 3 0.9806780600396078 8.864111919971874 9184.0 7.466666666666666 2.0 - - - - - - - 1243.5 18 8 BRCA2 breast cancer 2, early onset 1989 251 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10688.[MT7]-IFHEANADEC[CAM]EK[MT7].3y4_1.heavy 584.282 / 709.331 5166.0 21.852600574493408 44 18 10 6 10 2.7510920267722496 29.132554787852015 0.03600120544433594 3 0.9806780600396078 8.864111919971874 5166.0 11.316838667537558 0.0 - - - - - - - 765.3636363636364 10 11 BRCA2 breast cancer 2, early onset 1991 251 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10688.[MT7]-IFHEANADEC[CAM]EK[MT7].3b3_1.heavy 584.282 / 542.321 5932.0 21.852600574493408 44 18 10 6 10 2.7510920267722496 29.132554787852015 0.03600120544433594 3 0.9806780600396078 8.864111919971874 5932.0 6.818390804597701 0.0 - - - - - - - 741.5 11 8 BRCA2 breast cancer 2, early onset 1993 251 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10688.[MT7]-IFHEANADEC[CAM]EK[MT7].3y5_1.heavy 584.282 / 824.358 7080.0 21.852600574493408 44 18 10 6 10 2.7510920267722496 29.132554787852015 0.03600120544433594 3 0.9806780600396078 8.864111919971874 7080.0 19.861225301606556 0.0 - - - - - - - 319.0 14 9 BRCA2 breast cancer 2, early onset 1995 252 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10689.[MT7]-FIYAIHDETSYK[MT7].3y6_1.heavy 592.313 / 886.427 9585.0 30.00349998474121 45 15 10 10 10 3.1690911770678505 31.554787922676105 0.0 3 0.9570095242822394 5.9307273232703555 9585.0 60.32838959601549 0.0 - - - - - - - 312.5 19 8 BRCA2 breast cancer 2, early onset 1997 252 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10689.[MT7]-FIYAIHDETSYK[MT7].3b4_1.heavy 592.313 / 639.362 10002.0 30.00349998474121 45 15 10 10 10 3.1690911770678505 31.554787922676105 0.0 3 0.9570095242822394 5.9307273232703555 10002.0 10.437362357779302 0.0 - - - - - - - 291.6 20 5 BRCA2 breast cancer 2, early onset 1999 252 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10689.[MT7]-FIYAIHDETSYK[MT7].3y4_1.heavy 592.313 / 642.358 7710.0 30.00349998474121 45 15 10 10 10 3.1690911770678505 31.554787922676105 0.0 3 0.9570095242822394 5.9307273232703555 7710.0 18.498083453237413 0.0 - - - - - - - 654.8571428571429 15 7 BRCA2 breast cancer 2, early onset 2001 252 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10689.[MT7]-FIYAIHDETSYK[MT7].3b3_1.heavy 592.313 / 568.325 6043.0 30.00349998474121 45 15 10 10 10 3.1690911770678505 31.554787922676105 0.0 3 0.9570095242822394 5.9307273232703555 6043.0 11.01890595009597 0.0 - - - - - - - 807.875 12 8 BRCA2 breast cancer 2, early onset 2003 253 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10687.[MT7]-FIASVTDSENTNQR.3y7_1.heavy 575.956 / 848.386 4302.0 27.179399490356445 41 16 10 5 10 4.14291451622421 24.1375967590899 0.04579925537109375 3 0.9697281261009565 7.0752372889661475 4302.0 8.927055203238716 0.0 - - - - - - - 339.5 8 8 BRCA2 breast cancer 2, early onset 2005 253 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10687.[MT7]-FIASVTDSENTNQR.3b4_1.heavy 575.956 / 563.331 10188.0 27.179399490356445 41 16 10 5 10 4.14291451622421 24.1375967590899 0.04579925537109375 3 0.9697281261009565 7.0752372889661475 10188.0 21.864039735099336 1.0 - - - - - - - 339.5 20 8 BRCA2 breast cancer 2, early onset 2007 253 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10687.[MT7]-FIASVTDSENTNQR.3y4_1.heavy 575.956 / 518.268 6792.0 27.179399490356445 41 16 10 5 10 4.14291451622421 24.1375967590899 0.04579925537109375 3 0.9697281261009565 7.0752372889661475 6792.0 8.126771838600469 0.0 - - - - - - - 339.5 13 4 BRCA2 breast cancer 2, early onset 2009 253 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10687.[MT7]-FIASVTDSENTNQR.3y5_1.heavy 575.956 / 632.311 16980.0 27.179399490356445 41 16 10 5 10 4.14291451622421 24.1375967590899 0.04579925537109375 3 0.9697281261009565 7.0752372889661475 16980.0 28.55481647063739 0.0 - - - - - - - 792.5 33 8 BRCA2 breast cancer 2, early onset 2011 254 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9706.[MT7]-LC[CAM]DFGSAK[MT7].2y4_1.heavy 593.312 / 506.306 8275.0 25.627599716186523 40 18 2 10 10 10.941596866133127 9.139433779499228 0.0 3 0.987279068543047 10.930535778482003 8275.0 6.557210996049435 1.0 - - - - - - - 745.6666666666666 106 9 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2013 254 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9706.[MT7]-LC[CAM]DFGSAK[MT7].2b3_1.heavy 593.312 / 533.251 20799.0 25.627599716186523 40 18 2 10 10 10.941596866133127 9.139433779499228 0.0 3 0.987279068543047 10.930535778482003 20799.0 12.357226382174403 1.0 - - - - - - - 799.0 41 7 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2015 254 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9706.[MT7]-LC[CAM]DFGSAK[MT7].2y5_1.heavy 593.312 / 653.374 21694.0 25.627599716186523 40 18 2 10 10 10.941596866133127 9.139433779499228 0.0 3 0.987279068543047 10.930535778482003 21694.0 26.001753130590345 0.0 - - - - - - - 319.57142857142856 43 7 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2017 254 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9706.[MT7]-LC[CAM]DFGSAK[MT7].2y7_1.heavy 593.312 / 928.432 16102.0 25.627599716186523 40 18 2 10 10 10.941596866133127 9.139433779499228 0.0 3 0.987279068543047 10.930535778482003 16102.0 18.904288804336062 1.0 - - - - - - - 406.45454545454544 32 11 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2019 255 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9169.[MT7]-YIVSASGDR.2b3_1.heavy 556.297 / 520.325 12455.0 22.97397470474243 46 20 10 6 10 4.596235151236857 17.41925278678798 0.03830146789550781 3 0.9919800041457516 13.77160687517857 12455.0 15.534780007595595 0.0 - - - - - - - 1276.0 24 8 FBXW11;BTRC F-box and WD repeat domain containing 11;beta-transducin repeat containing 2021 255 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9169.[MT7]-YIVSASGDR.2y8_1.heavy 556.297 / 804.421 31239.0 22.97397470474243 46 20 10 6 10 4.596235151236857 17.41925278678798 0.03830146789550781 3 0.9919800041457516 13.77160687517857 31239.0 56.327398691041395 0.0 - - - - - - - 282.46153846153845 62 13 FBXW11;BTRC F-box and WD repeat domain containing 11;beta-transducin repeat containing 2023 255 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9169.[MT7]-YIVSASGDR.2y6_1.heavy 556.297 / 592.268 27360.0 22.97397470474243 46 20 10 6 10 4.596235151236857 17.41925278678798 0.03830146789550781 3 0.9919800041457516 13.77160687517857 27360.0 35.80735585116473 0.0 - - - - - - - 357.0 54 8 FBXW11;BTRC F-box and WD repeat domain containing 11;beta-transducin repeat containing 2025 255 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9169.[MT7]-YIVSASGDR.2y7_1.heavy 556.297 / 691.337 31648.0 22.97397470474243 46 20 10 6 10 4.596235151236857 17.41925278678798 0.03830146789550781 3 0.9919800041457516 13.77160687517857 31648.0 41.414807557732686 0.0 - - - - - - - 289.0 63 12 FBXW11;BTRC F-box and WD repeat domain containing 11;beta-transducin repeat containing 2027 256 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9705.[MT7]-LDHC[CAM]NIVR.3b3_1.heavy 390.877 / 510.279 6123.0 20.593700408935547 50 20 10 10 10 10.3426457283026 9.668705921769174 0.0 3 0.9960432566291142 19.61327531940853 6123.0 8.455832268333488 0.0 - - - - - - - 247.66666666666666 12 6 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2029 256 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9705.[MT7]-LDHC[CAM]NIVR.3y4_1.heavy 390.877 / 501.314 14288.0 20.593700408935547 50 20 10 10 10 10.3426457283026 9.668705921769174 0.0 3 0.9960432566291142 19.61327531940853 14288.0 33.8869388418998 0.0 - - - - - - - 253.27272727272728 28 11 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2031 256 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9705.[MT7]-LDHC[CAM]NIVR.3b2_1.heavy 390.877 / 373.22 N/A 20.593700408935547 50 20 10 10 10 10.3426457283026 9.668705921769174 0.0 3 0.9960432566291142 19.61327531940853 13917.0 7.38242355030507 1.0 - - - - - - - 371.0 27 1 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2033 256 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9705.[MT7]-LDHC[CAM]NIVR.3y5_1.heavy 390.877 / 661.345 10948.0 20.593700408935547 50 20 10 10 10 10.3426457283026 9.668705921769174 0.0 3 0.9960432566291142 19.61327531940853 10948.0 25.115601097523793 0.0 - - - - - - - 324.75 21 4 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2035 257 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9708.[MT7]-LLEYTPTAR.2b3_1.heavy 604.344 / 500.32 14857.0 29.04139995574951 45 20 10 5 10 5.467443647386627 18.29008334595251 0.04120063781738281 3 0.9921539911730074 13.923666345895887 14857.0 41.09164883944727 0.0 - - - - - - - 405.7142857142857 29 7 GSK3B glycogen synthase kinase 3 beta 2037 257 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9708.[MT7]-LLEYTPTAR.2y8_1.heavy 604.344 / 950.494 25344.0 29.04139995574951 45 20 10 5 10 5.467443647386627 18.29008334595251 0.04120063781738281 3 0.9921539911730074 13.923666345895887 25344.0 125.55719465780656 0.0 - - - - - - - 272.75 50 4 GSK3B glycogen synthase kinase 3 beta 2039 257 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9708.[MT7]-LLEYTPTAR.2y6_1.heavy 604.344 / 708.367 13764.0 29.04139995574951 45 20 10 5 10 5.467443647386627 18.29008334595251 0.04120063781738281 3 0.9921539911730074 13.923666345895887 13764.0 24.824890738552064 0.0 - - - - - - - 819.25 27 8 GSK3B glycogen synthase kinase 3 beta 2041 257 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9708.[MT7]-LLEYTPTAR.2y7_1.heavy 604.344 / 837.41 12890.0 29.04139995574951 45 20 10 5 10 5.467443647386627 18.29008334595251 0.04120063781738281 3 0.9921539911730074 13.923666345895887 12890.0 47.24872765385086 1.0 - - - - - - - 254.5 40 6 GSK3B glycogen synthase kinase 3 beta 2043 258 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9061.[MT7]-EAGLDLR.2y5_1.heavy 459.262 / 573.336 5466.0 24.50627565383911 35 13 10 6 6 2.413571375819739 41.43237734829212 0.03949928283691406 5 0.9215652613079162 4.377516284026647 5466.0 13.256429829097584 3.0 - - - - - - - 781.1428571428571 19 7 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 2045 258 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9061.[MT7]-EAGLDLR.2b4_1.heavy 459.262 / 515.295 5685.0 24.50627565383911 35 13 10 6 6 2.413571375819739 41.43237734829212 0.03949928283691406 5 0.9215652613079162 4.377516284026647 5685.0 3.2095460483344223 3.0 - - - - - - - 262.6 15 5 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 2047 258 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9061.[MT7]-EAGLDLR.2y6_1.heavy 459.262 / 644.373 19023.0 24.50627565383911 35 13 10 6 6 2.413571375819739 41.43237734829212 0.03949928283691406 5 0.9215652613079162 4.377516284026647 19023.0 34.582132917416224 1.0 - - - - - - - 262.6 48 5 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 2049 258 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9061.[MT7]-EAGLDLR.2b5_1.heavy 459.262 / 630.321 97522.0 24.50627565383911 35 13 10 6 6 2.413571375819739 41.43237734829212 0.03949928283691406 5 0.9215652613079162 4.377516284026647 97522.0 57.88664744112171 0.0 - - - - - - - 219.0 195 1 PIK3CB phosphoinositide-3-kinase, catalytic, beta polypeptide 2051 259 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10681.[MT7]-ERPTFFEIFK[MT7].3y3_1.heavy 534.636 / 551.367 65649.0 37.74580001831055 38 8 10 10 10 1.4206390110328446 63.31801199909475 0.0 3 0.7752923894790166 2.553075186626994 65649.0 153.07148544131027 0.0 - - - - - - - 266.9 131 10 BRCA2 breast cancer 2, early onset 2053 259 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10681.[MT7]-ERPTFFEIFK[MT7].3b5_1.heavy 534.636 / 775.422 26542.0 37.74580001831055 38 8 10 10 10 1.4206390110328446 63.31801199909475 0.0 3 0.7752923894790166 2.553075186626994 26542.0 89.35887170154686 0.0 - - - - - - - 266.9 53 10 BRCA2 breast cancer 2, early onset 2055 259 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10681.[MT7]-ERPTFFEIFK[MT7].3b7_1.heavy 534.636 / 1051.53 10523.0 37.74580001831055 38 8 10 10 10 1.4206390110328446 63.31801199909475 0.0 3 0.7752923894790166 2.553075186626994 10523.0 23.45891719745223 0.0 - - - - - - - 274.75 21 4 BRCA2 breast cancer 2, early onset 2057 259 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10681.[MT7]-ERPTFFEIFK[MT7].3b7_2.heavy 534.636 / 526.27 102400.0 37.74580001831055 38 8 10 10 10 1.4206390110328446 63.31801199909475 0.0 3 0.7752923894790166 2.553075186626994 102400.0 146.74432459945206 0.0 - - - - - - - 785.0 204 7 BRCA2 breast cancer 2, early onset 2059 260 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9702.[MT7]-VLQDK[MT7].2y4_1.heavy 445.781 / 647.385 49174.0 19.56006622314453 34 17 6 5 6 1.9400328157266589 39.80446729698388 0.041599273681640625 5 0.9723954513894708 7.410848038890729 49174.0 18.30215277965843 2.0 - - - - - - - 301.6666666666667 111 3 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2061 260 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9702.[MT7]-VLQDK[MT7].2b4_1.heavy 445.781 / 600.347 27299.0 19.56006622314453 34 17 6 5 6 1.9400328157266589 39.80446729698388 0.041599273681640625 5 0.9723954513894708 7.410848038890729 27299.0 14.593429596288505 2.0 - - - - - - - 241.33333333333334 76 3 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2063 260 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9702.[MT7]-VLQDK[MT7].2y3_1.heavy 445.781 / 534.3 15367.0 19.56006622314453 34 17 6 5 6 1.9400328157266589 39.80446729698388 0.041599273681640625 5 0.9723954513894708 7.410848038890729 15367.0 20.274578077657203 1.0 - - - - - - - 271.5 30 2 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2065 260 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9702.[MT7]-VLQDK[MT7].2y1_1.heavy 445.781 / 291.215 N/A 19.56006622314453 34 17 6 5 6 1.9400328157266589 39.80446729698388 0.041599273681640625 5 0.9723954513894708 7.410848038890729 45377.0 1.3250637165663073 4.0 - - - - - - - 1265.0 159 1 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2067 261 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9165.[MT7]-LLTTDQK[MT7].2y4_1.heavy 553.837 / 635.348 16411.0 23.234100341796875 43 13 10 10 10 1.02356928372382 65.13156239324461 0.0 3 0.9034026033268048 3.9384022237805585 16411.0 5.780988055340744 0.0 - - - - - - - 363.25 32 4 DDB2 damage-specific DNA binding protein 2, 48kDa 2069 261 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9165.[MT7]-LLTTDQK[MT7].2y5_1.heavy 553.837 / 736.396 29913.0 23.234100341796875 43 13 10 10 10 1.02356928372382 65.13156239324461 0.0 3 0.9034026033268048 3.9384022237805585 29913.0 86.4084701910807 0.0 - - - - - - - 389.125 59 8 DDB2 damage-specific DNA binding protein 2, 48kDa 2071 261 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9165.[MT7]-LLTTDQK[MT7].2y3_1.heavy 553.837 / 534.3 8725.0 23.234100341796875 43 13 10 10 10 1.02356928372382 65.13156239324461 0.0 3 0.9034026033268048 3.9384022237805585 8725.0 3.851083439496071 0.0 - - - - - - - 715.4444444444445 17 9 DDB2 damage-specific DNA binding protein 2, 48kDa 2073 261 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9165.[MT7]-LLTTDQK[MT7].2y6_1.heavy 553.837 / 849.48 31367.0 23.234100341796875 43 13 10 10 10 1.02356928372382 65.13156239324461 0.0 3 0.9034026033268048 3.9384022237805585 31367.0 18.414109835407995 0.0 - - - - - - - 277.0 62 9 DDB2 damage-specific DNA binding protein 2, 48kDa 2075 262 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10680.[MT7]-NNNYEPNLFK[MT7].3y3_1.heavy 514.271 / 551.367 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2077 262 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10680.[MT7]-NNNYEPNLFK[MT7].3b4_1.heavy 514.271 / 650.301 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2079 262 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10680.[MT7]-NNNYEPNLFK[MT7].3b5_1.heavy 514.271 / 779.344 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2081 262 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10680.[MT7]-NNNYEPNLFK[MT7].3y5_1.heavy 514.271 / 762.463 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2083 263 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9704.[MT7]-K[MT7]VLQDK[MT7].3y3_1.heavy 388.255 / 534.3 3240.0 17.294599533081055 36 20 0 10 6 13.417095061734951 7.453178168588536 0.0 6 0.9984071843365528 30.918751451168745 3240.0 6.664666666666667 2.0 - - - - - - - 307.8 8 10 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2085 263 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9704.[MT7]-K[MT7]VLQDK[MT7].3y4_1.heavy 388.255 / 647.385 2592.0 17.294599533081055 36 20 0 10 6 13.417095061734951 7.453178168588536 0.0 6 0.9984071843365528 30.918751451168745 2592.0 2.6222222222222222 3.0 - - - - - - - 324.0 11 11 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2087 263 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9704.[MT7]-K[MT7]VLQDK[MT7].3b2_1.heavy 388.255 / 516.375 2268.0 17.294599533081055 36 20 0 10 6 13.417095061734951 7.453178168588536 0.0 6 0.9984071843365528 30.918751451168745 2268.0 11.433333333333332 13.0 - - - - - - - 810.0 159 7 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2089 263 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9704.[MT7]-K[MT7]VLQDK[MT7].3y2_1.heavy 388.255 / 406.242 3888.0 17.294599533081055 36 20 0 10 6 13.417095061734951 7.453178168588536 0.0 6 0.9984071843365528 30.918751451168745 3888.0 2.56 0.0 - - - - - - - 270.0 7 9 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2091 264 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9167.[MT7]-LESEEEGVPSTAIR.3y6_1.heavy 554.289 / 644.373 27420.0 25.7898006439209 47 17 10 10 10 2.5324802645325026 31.388233551949163 0.0 3 0.9799588872923882 8.703089760964389 27420.0 3.6224529141331754 1.0 - - - - - - - 393.75 54 4 CDK1 cyclin-dependent kinase 1 2093 264 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9167.[MT7]-LESEEEGVPSTAIR.3b5_1.heavy 554.289 / 732.353 5844.0 25.7898006439209 47 17 10 10 10 2.5324802645325026 31.388233551949163 0.0 3 0.9799588872923882 8.703089760964389 5844.0 26.1344 0.0 - - - - - - - 257.14285714285717 11 7 CDK1 cyclin-dependent kinase 1 2095 264 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9167.[MT7]-LESEEEGVPSTAIR.3b7_1.heavy 554.289 / 918.417 11013.0 25.7898006439209 47 17 10 10 10 2.5324802645325026 31.388233551949163 0.0 3 0.9799588872923882 8.703089760964389 11013.0 22.086009377277 0.0 - - - - - - - 337.5 22 10 CDK1 cyclin-dependent kinase 1 2097 264 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9167.[MT7]-LESEEEGVPSTAIR.3y5_1.heavy 554.289 / 547.32 6518.0 25.7898006439209 47 17 10 10 10 2.5324802645325026 31.388233551949163 0.0 3 0.9799588872923882 8.703089760964389 6518.0 12.955767520946386 0.0 - - - - - - - 365.625 13 8 CDK1 cyclin-dependent kinase 1 2099 265 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9064.[MT7]-DVFQK[MT7].2b3_1.heavy 462.773 / 506.273 7843.0 23.30014991760254 43 17 10 6 10 4.46894693645444 22.37663624606331 0.0373992919921875 3 0.9712643272106796 7.2628350967913935 7843.0 5.1940194080224416 0.0 - - - - - - - 648.5714285714286 15 7 TAF6L;LIF;CUL2;CUL1 TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa;leukemia inhibitory factor (cholinergic differentiation factor);cullin 2;cullin 1 2101 265 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9064.[MT7]-DVFQK[MT7].2y4_1.heavy 462.773 / 665.41 20846.0 23.30014991760254 43 17 10 6 10 4.46894693645444 22.37663624606331 0.0373992919921875 3 0.9712643272106796 7.2628350967913935 20846.0 29.076214421072045 0.0 - - - - - - - 321.0 41 9 TAF6L;LIF;CUL2;CUL1 TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa;leukemia inhibitory factor (cholinergic differentiation factor);cullin 2;cullin 1 2103 265 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9064.[MT7]-DVFQK[MT7].2b4_1.heavy 462.773 / 634.332 4747.0 23.30014991760254 43 17 10 6 10 4.46894693645444 22.37663624606331 0.0373992919921875 3 0.9712643272106796 7.2628350967913935 4747.0 8.205340884898122 3.0 - - - - - - - 298.0 23 9 TAF6L;LIF;CUL2;CUL1 TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa;leukemia inhibitory factor (cholinergic differentiation factor);cullin 2;cullin 1 2105 265 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9064.[MT7]-DVFQK[MT7].2y3_1.heavy 462.773 / 566.342 21878.0 23.30014991760254 43 17 10 6 10 4.46894693645444 22.37663624606331 0.0373992919921875 3 0.9712643272106796 7.2628350967913935 21878.0 38.14868422249044 0.0 - - - - - - - 707.7142857142857 43 7 TAF6L;LIF;CUL2;CUL1 TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa;leukemia inhibitory factor (cholinergic differentiation factor);cullin 2;cullin 1 2107 266 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9703.[MT7]-AHPWTK[MT7].2y4_1.heavy 514.3 / 675.395 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2109 266 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9703.[MT7]-AHPWTK[MT7].2y5_1.heavy 514.3 / 812.453 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2111 266 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9703.[MT7]-AHPWTK[MT7].2b4_1.heavy 514.3 / 636.337 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2113 266 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9703.[MT7]-AHPWTK[MT7].2y3_1.heavy 514.3 / 578.342 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2115 267 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9162.[MT7]-GGAGNISLK[MT7].2b6_1.heavy 552.834 / 614.338 21233.0 22.528650760650635 41 15 10 6 10 3.059541424711664 32.68463672114659 0.03660011291503906 3 0.9518643814896549 5.6023653133817515 21233.0 41.72355231068207 0.0 - - - - - - - 228.71428571428572 42 7 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 2117 267 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9162.[MT7]-GGAGNISLK[MT7].2y6_1.heavy 552.834 / 775.479 19030.0 22.528650760650635 41 15 10 6 10 3.059541424711664 32.68463672114659 0.03660011291503906 3 0.9518643814896549 5.6023653133817515 19030.0 17.85249500998004 0.0 - - - - - - - 225.125 38 8 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 2119 267 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9162.[MT7]-GGAGNISLK[MT7].2b7_1.heavy 552.834 / 701.37 18228.0 22.528650760650635 41 15 10 6 10 3.059541424711664 32.68463672114659 0.03660011291503906 3 0.9518643814896549 5.6023653133817515 18228.0 39.42828618968386 0.0 - - - - - - - 629.5714285714286 36 7 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 2121 267 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9162.[MT7]-GGAGNISLK[MT7].2b5_1.heavy 552.834 / 501.254 39862.0 22.528650760650635 41 15 10 6 10 3.059541424711664 32.68463672114659 0.03660011291503906 3 0.9518643814896549 5.6023653133817515 39862.0 55.983237762469294 0.0 - - - - - - - 401.0 79 1 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 2123 268 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9163.[MT7]-VNENLTK[MT7].2y4_1.heavy 553.326 / 619.39 16006.0 20.152599334716797 44 14 10 10 10 2.437300234850244 41.029003554887986 0.0 3 0.9367863147230371 4.882497730446918 16006.0 28.27146739130435 0.0 - - - - - - - 797.3333333333334 32 9 CCNB2 cyclin B2 2125 268 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9163.[MT7]-VNENLTK[MT7].2b4_1.heavy 553.326 / 601.306 14166.0 20.152599334716797 44 14 10 10 10 2.437300234850244 41.029003554887986 0.0 3 0.9367863147230371 4.882497730446918 14166.0 23.371700310559007 0.0 - - - - - - - 690.0 28 8 CCNB2 cyclin B2 2127 268 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9163.[MT7]-VNENLTK[MT7].2y6_1.heavy 553.326 / 862.475 33667.0 20.152599334716797 44 14 10 10 10 2.437300234850244 41.029003554887986 0.0 3 0.9367863147230371 4.882497730446918 33667.0 64.95535326086957 1.0 - - - - - - - 715.5555555555555 67 9 CCNB2 cyclin B2 2129 268 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9163.[MT7]-VNENLTK[MT7].2b5_1.heavy 553.326 / 714.39 7911.0 20.152599334716797 44 14 10 10 10 2.437300234850244 41.029003554887986 0.0 3 0.9367863147230371 4.882497730446918 7911.0 23.790326086956522 0.0 - - - - - - - 217.45454545454547 15 11 CCNB2 cyclin B2 2131 269 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9068.[MT7]-VAAAASC[CAM]LSQK[MT7].3y3_1.heavy 465.262 / 506.306 56849.0 23.374849319458008 40 14 10 6 10 1.8794477521119692 41.933942394612416 0.0373992919921875 3 0.933371057898198 4.7543321595249814 56849.0 101.71242746615087 0.0 - - - - - - - 275.6666666666667 113 6 CCNB2 cyclin B2 2133 269 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9068.[MT7]-VAAAASC[CAM]LSQK[MT7].3b4_1.heavy 465.262 / 457.289 44032.0 23.374849319458008 40 14 10 6 10 1.8794477521119692 41.933942394612416 0.0373992919921875 3 0.933371057898198 4.7543321595249814 44032.0 46.15113206566016 0.0 - - - - - - - 330.6 88 5 CCNB2 cyclin B2 2135 269 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9068.[MT7]-VAAAASC[CAM]LSQK[MT7].3b5_1.heavy 465.262 / 528.326 26667.0 23.374849319458008 40 14 10 6 10 1.8794477521119692 41.933942394612416 0.0373992919921875 3 0.933371057898198 4.7543321595249814 26667.0 60.29902055622733 0.0 - - - - - - - 723.5 53 8 CCNB2 cyclin B2 2137 269 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9068.[MT7]-VAAAASC[CAM]LSQK[MT7].3y4_1.heavy 465.262 / 619.39 10750.0 23.374849319458008 40 14 10 6 10 1.8794477521119692 41.933942394612416 0.0373992919921875 3 0.933371057898198 4.7543321595249814 10750.0 27.674763727251424 0.0 - - - - - - - 263.1818181818182 21 11 CCNB2 cyclin B2 2139 270 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A495.[MT7]-TPLAGPNIDYPVLYGK[MT7].3b9_1.heavy 669.378 / 1023.56 15621.0 35.23422431945801 43 17 10 6 10 5.873455772680369 17.02575176698142 0.03189849853515625 3 0.9795044570637386 8.605737497403144 15621.0 18.412585551330796 1.0 - - - - - - - 315.61538461538464 31 13 PIAS4 protein inhibitor of activated STAT, 4 2141 270 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A495.[MT7]-TPLAGPNIDYPVLYGK[MT7].3y3_1.heavy 669.378 / 511.3 49546.0 35.23422431945801 43 17 10 6 10 5.873455772680369 17.02575176698142 0.03189849853515625 3 0.9795044570637386 8.605737497403144 49546.0 16.745585128855094 0.0 - - - - - - - 1192.3333333333333 99 9 PIAS4 protein inhibitor of activated STAT, 4 2143 270 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A495.[MT7]-TPLAGPNIDYPVLYGK[MT7].3b4_1.heavy 669.378 / 527.331 24300.0 35.23422431945801 43 17 10 6 10 5.873455772680369 17.02575176698142 0.03189849853515625 3 0.9795044570637386 8.605737497403144 24300.0 24.836947810524666 0.0 - - - - - - - 355.125 48 8 PIAS4 protein inhibitor of activated STAT, 4 2145 270 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A495.[MT7]-TPLAGPNIDYPVLYGK[MT7].3y4_1.heavy 669.378 / 624.384 34556.0 35.23422431945801 43 17 10 6 10 5.873455772680369 17.02575176698142 0.03189849853515625 3 0.9795044570637386 8.605737497403144 34556.0 19.109308755760367 1.0 - - - - - - - 766.4285714285714 69 7 PIAS4 protein inhibitor of activated STAT, 4 2147 271 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A494.[MT7]-NTLWQISNGTSSVIVSR.3y7_1.heavy 669.364 / 747.436 4179.0 34.242167154947914 35 17 2 6 10 2.9661325989592617 26.682154776827385 0.0370025634765625 3 0.9797951221930461 8.667628578301358 4179.0 6.445892194977002 0.0 - - - - - - - 337.3 8 10 FBXW11 F-box and WD repeat domain containing 11 2149 271 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A494.[MT7]-NTLWQISNGTSSVIVSR.3y6_1.heavy 669.364 / 660.404 N/A 34.242167154947914 35 17 2 6 10 2.9661325989592617 26.682154776827385 0.0370025634765625 3 0.9797951221930461 8.667628578301358 4018.0 2.897331073235611 11.0 - - - - - - - 1782.6363636363637 27 11 FBXW11 F-box and WD repeat domain containing 11 2151 271 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A494.[MT7]-NTLWQISNGTSSVIVSR.3b5_1.heavy 669.364 / 787.422 5465.0 34.242167154947914 35 17 2 6 10 2.9661325989592617 26.682154776827385 0.0370025634765625 3 0.9797951221930461 8.667628578301358 5465.0 6.527210557860766 1.0 - - - - - - - 849.4285714285714 10 7 FBXW11 F-box and WD repeat domain containing 11 2153 271 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A494.[MT7]-NTLWQISNGTSSVIVSR.3y5_1.heavy 669.364 / 573.372 2732.0 34.242167154947914 35 17 2 6 10 2.9661325989592617 26.682154776827385 0.0370025634765625 3 0.9797951221930461 8.667628578301358 2732.0 4.673716951788491 1.0 - - - - - - - 1217.0 5 7 FBXW11 F-box and WD repeat domain containing 11 2155 272 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A493.[MT7]-AQLQLLGAVC[CAM]MLLASK[MT7].3b4_1.heavy 668.724 / 585.348 17624.0 48.557350158691406 37 11 10 6 10 0.9541084969139059 72.88195735673101 0.0345001220703125 3 0.8728512872045415 3.4236828715379084 17624.0 40.65326709887457 0.0 - - - - - - - 256.15384615384613 35 13 CCND3 cyclin D3 2157 272 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A493.[MT7]-AQLQLLGAVC[CAM]MLLASK[MT7].3b5_1.heavy 668.724 / 698.432 21697.0 48.557350158691406 37 11 10 6 10 0.9541084969139059 72.88195735673101 0.0345001220703125 3 0.8728512872045415 3.4236828715379084 21697.0 160.11001150625495 0.0 - - - - - - - 304.22222222222223 43 9 CCND3 cyclin D3 2159 272 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A493.[MT7]-AQLQLLGAVC[CAM]MLLASK[MT7].3y4_1.heavy 668.724 / 562.368 33323.0 48.557350158691406 37 11 10 6 10 0.9541084969139059 72.88195735673101 0.0345001220703125 3 0.8728512872045415 3.4236828715379084 33323.0 239.67009654514328 0.0 - - - - - - - 222.0 66 9 CCND3 cyclin D3 2161 272 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A493.[MT7]-AQLQLLGAVC[CAM]MLLASK[MT7].3b8_1.heavy 668.724 / 939.574 14810.0 48.557350158691406 37 11 10 6 10 0.9541084969139059 72.88195735673101 0.0345001220703125 3 0.8728512872045415 3.4236828715379084 14810.0 11.763906390639065 1.0 - - - - - - - 283.6666666666667 29 6 CCND3 cyclin D3 2163 273 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10693.[MT7]-QAISGTSPVASSFQGIK[MT7].3b14_2.heavy 656.033 / 753.39 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2165 273 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10693.[MT7]-QAISGTSPVASSFQGIK[MT7].3b11_2.heavy 656.033 / 572.31 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2167 273 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10693.[MT7]-QAISGTSPVASSFQGIK[MT7].3y8_1.heavy 656.033 / 981.549 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2169 273 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10693.[MT7]-QAISGTSPVASSFQGIK[MT7].3b7_1.heavy 656.033 / 789.422 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2171 274 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9700.[MT7]-VLGTPTR.2y5_1.heavy 444.275 / 531.289 17093.0 20.750099182128906 46 20 10 6 10 4.557921250337342 21.93982618558817 0.03639984130859375 3 0.9927261368823255 14.461595373472695 17093.0 38.14159326081377 1.0 - - - - - - - 912.1428571428571 34 7 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2173 274 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9700.[MT7]-VLGTPTR.2b4_1.heavy 444.275 / 515.331 6386.0 20.750099182128906 46 20 10 6 10 4.557921250337342 21.93982618558817 0.03639984130859375 3 0.9927261368823255 14.461595373472695 6386.0 15.731158455392809 0.0 - - - - - - - 695.0 12 10 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2175 274 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9700.[MT7]-VLGTPTR.2y6_1.heavy 444.275 / 644.373 46208.0 20.750099182128906 46 20 10 6 10 4.557921250337342 21.93982618558817 0.03639984130859375 3 0.9927261368823255 14.461595373472695 46208.0 53.4378231292517 0.0 - - - - - - - 730.6666666666666 92 9 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2177 274 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9700.[MT7]-VLGTPTR.2b1_1.heavy 444.275 / 244.178 16530.0 20.750099182128906 46 20 10 6 10 4.557921250337342 21.93982618558817 0.03639984130859375 3 0.9927261368823255 14.461595373472695 16530.0 9.499050363879261 0.0 - - - - - - - 845.0 33 2 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2179 275 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10694.[MT7]-NDRFIASVTDSENTNQR.3y7_1.heavy 704.346 / 848.386 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2181 275 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10694.[MT7]-NDRFIASVTDSENTNQR.3y8_1.heavy 704.346 / 963.413 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2183 275 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10694.[MT7]-NDRFIASVTDSENTNQR.3b7_1.heavy 704.346 / 948.502 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2185 275 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10694.[MT7]-NDRFIASVTDSENTNQR.3y9_1.heavy 704.346 / 1064.46 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2187 276 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10695.[MT7]-QAISGTSPVASSFQGIK[MT7]K[MT7].4y4_1.heavy 560.326 / 733.517 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2189 276 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10695.[MT7]-QAISGTSPVASSFQGIK[MT7]K[MT7].4y8_2.heavy 560.326 / 591.858 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2191 276 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10695.[MT7]-QAISGTSPVASSFQGIK[MT7]K[MT7].4y9_2.heavy 560.326 / 627.376 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2193 276 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10695.[MT7]-QAISGTSPVASSFQGIK[MT7]K[MT7].4y2_1.heavy 560.326 / 563.412 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2195 277 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10696.[MT7]-NEEASETVFPHDTTANVK[MT7].4b15_2.heavy 570.036 / 887.406 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2197 277 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10696.[MT7]-NEEASETVFPHDTTANVK[MT7].4b4_1.heavy 570.036 / 588.275 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2199 277 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10696.[MT7]-NEEASETVFPHDTTANVK[MT7].4y7_1.heavy 570.036 / 892.486 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2201 277 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10696.[MT7]-NEEASETVFPHDTTANVK[MT7].4y3_1.heavy 570.036 / 504.326 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2203 278 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10697.[MT7]-ETEASESGLEIHTVC[CAM]SQK[MT7].3y6_1.heavy 765.046 / 866.452 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2205 278 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10697.[MT7]-ETEASESGLEIHTVC[CAM]SQK[MT7].3b4_1.heavy 765.046 / 575.279 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2207 278 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10697.[MT7]-ETEASESGLEIHTVC[CAM]SQK[MT7].3y4_1.heavy 765.046 / 666.336 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2209 278 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10697.[MT7]-ETEASESGLEIHTVC[CAM]SQK[MT7].3b8_1.heavy 765.046 / 935.407 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2211 279 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10698.[MT7]-RDEEQHLESHTDC[CAM]ILAVK[MT7].4y4_1.heavy 617.817 / 574.404 3911.0 27.739700317382812 33 11 8 10 4 0.6971596790043023 78.05002993136836 0.0 7 0.8564964891952476 3.218068116606722 3911.0 2.1238590891071536 7.0 - - - - - - - 435.0 16 1 BRCA2 breast cancer 2, early onset 2213 279 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10698.[MT7]-RDEEQHLESHTDC[CAM]ILAVK[MT7].4b4_1.heavy 617.817 / 674.323 10212.0 27.739700317382812 33 11 8 10 4 0.6971596790043023 78.05002993136836 0.0 7 0.8564964891952476 3.218068116606722 10212.0 3.3575676363549345 2.0 - - - - - - - 435.0 30 2 BRCA2 breast cancer 2, early onset 2215 279 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10698.[MT7]-RDEEQHLESHTDC[CAM]ILAVK[MT7].4b5_1.heavy 617.817 / 802.381 10429.0 27.739700317382812 33 11 8 10 4 0.6971596790043023 78.05002993136836 0.0 7 0.8564964891952476 3.218068116606722 10429.0 5.380535097813579 1.0 - - - - - - - 341.57142857142856 20 7 BRCA2 breast cancer 2, early onset 2217 279 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10698.[MT7]-RDEEQHLESHTDC[CAM]ILAVK[MT7].4b6_1.heavy 617.817 / 939.44 652.0 27.739700317382812 33 11 8 10 4 0.6971596790043023 78.05002993136836 0.0 7 0.8564964891952476 3.218068116606722 652.0 4.188216748768473 5.0 - - - - - - - 341.57142857142856 2 7 BRCA2 breast cancer 2, early onset 2219 280 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 ODP2_ECOLI.EAAPAAAPAAAAAK.2y7.peptide 590.82 / 599.35 386185.0 17.294599533081055 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 386185.0 689.1186247265417 0.0 - - - - - - - 325.0 772 1 2221 280 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 ODP2_ECOLI.EAAPAAAPAAAAAK.2y9.peptide 590.82 / 741.43 252199.0 17.294599533081055 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 252199.0 1622.2134100641165 0.0 - - - - - - - 365.75 504 4 2223 280 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 ODP2_ECOLI.EAAPAAAPAAAAAK.2y11.peptide 590.82 / 909.52 292037.0 17.294599533081055 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 292037.0 1930.4323998738028 0.0 - - - - - - - 406.5 584 2 2225 281 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9177.[MT7]-LGGGSEDAK[MT7].2y8_1.heavy 561.306 / 864.418 13418.0 17.482799530029297 38 10 10 10 8 1.7047606763704106 49.366664333349235 0.0 4 0.8311822319532087 2.960364334861357 13418.0 59.67418773490207 0.0 - - - - - - - 245.5 26 8 AKT1 v-akt murine thymoma viral oncogene homolog 1 2227 281 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9177.[MT7]-LGGGSEDAK[MT7].2y6_1.heavy 561.306 / 750.375 2127.0 17.482799530029297 38 10 10 10 8 1.7047606763704106 49.366664333349235 0.0 4 0.8311822319532087 2.960364334861357 2127.0 19.135900481091966 4.0 - - - - - - - 245.5 12 6 AKT1 v-akt murine thymoma viral oncogene homolog 1 2229 281 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9177.[MT7]-LGGGSEDAK[MT7].2b7_1.heavy 561.306 / 760.359 18818.0 17.482799530029297 38 10 10 10 8 1.7047606763704106 49.366664333349235 0.0 4 0.8311822319532087 2.960364334861357 18818.0 33.59906461281228 0.0 - - - - - - - 327.4 37 5 AKT1 v-akt murine thymoma viral oncogene homolog 1 2231 281 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9177.[MT7]-LGGGSEDAK[MT7].2b5_1.heavy 561.306 / 516.29 1473.0 17.482799530029297 38 10 10 10 8 1.7047606763704106 49.366664333349235 0.0 4 0.8311822319532087 2.960364334861357 1473.0 0.28573923166472637 39.0 - - - - - - - 1332.4285714285713 19 7 AKT1 v-akt murine thymoma viral oncogene homolog 1 2233 282 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9074.[MT7]-VEEGDSR.2y5_1.heavy 468.231 / 563.242 3056.0 14.206299781799316 37 13 6 10 8 2.2515248411944704 44.414344523486754 0.0 4 0.907679285867826 4.030078994249178 3056.0 4.301767486383186 1.0 - - - - - - - 193.26315789473685 6 19 WEE2 WEE1 homolog 2 (S. pombe) 2235 282 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9074.[MT7]-VEEGDSR.2b4_1.heavy 468.231 / 559.284 1121.0 14.206299781799316 37 13 6 10 8 2.2515248411944704 44.414344523486754 0.0 4 0.907679285867826 4.030078994249178 1121.0 0.5495098039215686 2.0 - - - - - - - 221.7391304347826 5 23 WEE2 WEE1 homolog 2 (S. pombe) 2237 282 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9074.[MT7]-VEEGDSR.2y6_1.heavy 468.231 / 692.285 9373.0 14.206299781799316 37 13 6 10 8 2.2515248411944704 44.414344523486754 0.0 4 0.907679285867826 4.030078994249178 9373.0 27.91240374831559 1.0 - - - - - - - 674.75 106 8 WEE2 WEE1 homolog 2 (S. pombe) 2239 282 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9074.[MT7]-VEEGDSR.2b5_1.heavy 468.231 / 674.311 33519.0 14.206299781799316 37 13 6 10 8 2.2515248411944704 44.414344523486754 0.0 4 0.907679285867826 4.030078994249178 33519.0 90.38328784089269 0.0 - - - - - - - 255.0 67 14 WEE2 WEE1 homolog 2 (S. pombe) 2241 283 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9175.[MT7]-AAESLLVK[MT7].2y5_1.heavy 559.855 / 703.483 44003.0 27.33930015563965 50 20 10 10 10 7.2858098951171275 13.72531008076658 0.0 3 0.9954198237862235 18.228686452029386 44003.0 65.7893181444611 0.0 - - - - - - - 741.5714285714286 88 7 SHC4 SHC (Src homology 2 domain containing) family, member 4 2243 283 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9175.[MT7]-AAESLLVK[MT7].2b6_1.heavy 559.855 / 729.426 44003.0 27.33930015563965 50 20 10 10 10 7.2858098951171275 13.72531008076658 0.0 3 0.9954198237862235 18.228686452029386 44003.0 57.53494244650839 0.0 - - - - - - - 386.7142857142857 88 7 SHC4 SHC (Src homology 2 domain containing) family, member 4 2245 283 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9175.[MT7]-AAESLLVK[MT7].2y1_1.heavy 559.855 / 291.215 N/A 27.33930015563965 50 20 10 10 10 7.2858098951171275 13.72531008076658 0.0 3 0.9954198237862235 18.228686452029386 69727.0 17.618252340029187 1.0 - - - - - - - 2257.0 139 1 SHC4 SHC (Src homology 2 domain containing) family, member 4 2247 283 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9175.[MT7]-AAESLLVK[MT7].2y7_1.heavy 559.855 / 903.563 46710.0 27.33930015563965 50 20 10 10 10 7.2858098951171275 13.72531008076658 0.0 3 0.9954198237862235 18.228686452029386 46710.0 134.59492011108574 0.0 - - - - - - - 354.57142857142856 93 7 SHC4 SHC (Src homology 2 domain containing) family, member 4 2249 284 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9174.[MT7]-GQVFDVGPR.2b4_1.heavy 559.807 / 576.326 29948.0 26.61400032043457 44 14 10 10 10 2.195377144352494 45.55026012603136 0.0 3 0.9328955154407157 4.737263720847535 29948.0 92.28155485630376 0.0 - - - - - - - 288.90909090909093 59 11 MAPK1 mitogen-activated protein kinase 1 2251 284 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9174.[MT7]-GQVFDVGPR.2y6_1.heavy 559.807 / 690.357 73283.0 26.61400032043457 44 14 10 10 10 2.195377144352494 45.55026012603136 0.0 3 0.9328955154407157 4.737263720847535 73283.0 152.85297982270083 0.0 - - - - - - - 272.4 146 5 MAPK1 mitogen-activated protein kinase 1 2253 284 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9174.[MT7]-GQVFDVGPR.2b5_1.heavy 559.807 / 691.353 255923.0 26.61400032043457 44 14 10 10 10 2.195377144352494 45.55026012603136 0.0 3 0.9328955154407157 4.737263720847535 255923.0 214.98797166710102 0.0 - - - - - - - 454.0 511 1 MAPK1 mitogen-activated protein kinase 1 2255 284 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9174.[MT7]-GQVFDVGPR.2y7_1.heavy 559.807 / 789.425 44696.0 26.61400032043457 44 14 10 10 10 2.195377144352494 45.55026012603136 0.0 3 0.9328955154407157 4.737263720847535 44696.0 108.1691791099069 0.0 - - - - - - - 378.3333333333333 89 6 MAPK1 mitogen-activated protein kinase 1 2257 285 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9079.[MT7]-YLSC[CAM]VPTRK[MT7].3y7_1.heavy 471.271 / 991.547 1254.0 23.77935028076172 33 7 10 6 10 1.0055655062130286 66.83515483520051 0.0381011962890625 3 0.7323292757107159 2.330025921749171 1254.0 5.5 1.0 - - - - - - - 209.0 2 1 CCND3 cyclin D3 2259 285 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9079.[MT7]-YLSC[CAM]VPTRK[MT7].3y6_1.heavy 471.271 / 904.516 6690.0 23.77935028076172 33 7 10 6 10 1.0055655062130286 66.83515483520051 0.0381011962890625 3 0.7323292757107159 2.330025921749171 6690.0 39.37177033492823 0.0 - - - - - - - 313.5 13 4 CCND3 cyclin D3 2261 285 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9079.[MT7]-YLSC[CAM]VPTRK[MT7].3y8_2.heavy 471.271 / 552.819 50805.0 23.77935028076172 33 7 10 6 10 1.0055655062130286 66.83515483520051 0.0381011962890625 3 0.7323292757107159 2.330025921749171 50805.0 104.1624043062201 0.0 - - - - - - - 650.2222222222222 101 9 CCND3 cyclin D3 2263 285 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9079.[MT7]-YLSC[CAM]VPTRK[MT7].3y4_1.heavy 471.271 / 645.416 31361.0 23.77935028076172 33 7 10 6 10 1.0055655062130286 66.83515483520051 0.0381011962890625 3 0.7323292757107159 2.330025921749171 31361.0 138.7986842105263 0.0 - - - - - - - 304.0 62 11 CCND3 cyclin D3 2265 286 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9171.[MT7]-NNLVGDALR.2y5_1.heavy 558.318 / 531.289 21472.0 27.383699417114258 46 16 10 10 10 3.1443523653121996 25.465600101598817 0.0 3 0.962369213320395 6.341899026379265 21472.0 36.64627054361568 0.0 - - - - - - - 361.6 42 5 HERC3 hect domain and RLD 3 2267 286 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9171.[MT7]-NNLVGDALR.2b6_1.heavy 558.318 / 757.396 18534.0 27.383699417114258 46 16 10 10 10 3.1443523653121996 25.465600101598817 0.0 3 0.962369213320395 6.341899026379265 18534.0 44.48980088495575 0.0 - - - - - - - 367.25 37 8 HERC3 hect domain and RLD 3 2269 286 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9171.[MT7]-NNLVGDALR.2y6_1.heavy 558.318 / 630.357 19212.0 27.383699417114258 46 16 10 10 10 3.1443523653121996 25.465600101598817 0.0 3 0.962369213320395 6.341899026379265 19212.0 48.1716814159292 0.0 - - - - - - - 322.85714285714283 38 7 HERC3 hect domain and RLD 3 2271 286 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9171.[MT7]-NNLVGDALR.2b7_1.heavy 558.318 / 828.433 6103.0 27.383699417114258 46 16 10 10 10 3.1443523653121996 25.465600101598817 0.0 3 0.962369213320395 6.341899026379265 6103.0 11.18754740834387 0.0 - - - - - - - 339.0 12 10 HERC3 hect domain and RLD 3 2273 287 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10663.[MT7]-LTIEFTEEYPNK[MT7]PPTVR.4y5_1.heavy 581.32 / 569.341 82322.0 31.9822998046875 44 14 10 10 10 1.6520135071902986 40.722800510428634 0.0 3 0.9337980497756039 4.769813822593404 82322.0 62.08283409122993 0.0 - - - - - - - 279.0 164 4 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2275 287 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10663.[MT7]-LTIEFTEEYPNK[MT7]PPTVR.4y8_1.heavy 581.32 / 1052.63 21977.0 31.9822998046875 44 14 10 10 10 1.6520135071902986 40.722800510428634 0.0 3 0.9337980497756039 4.769813822593404 21977.0 39.70912211575276 0.0 - - - - - - - 265.7142857142857 43 7 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2277 287 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10663.[MT7]-LTIEFTEEYPNK[MT7]PPTVR.4y8_2.heavy 581.32 / 526.82 162036.0 31.9822998046875 44 14 10 10 10 1.6520135071902986 40.722800510428634 0.0 3 0.9337980497756039 4.769813822593404 162036.0 194.9258535456235 0.0 - - - - - - - 325.5 324 4 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2279 287 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10663.[MT7]-LTIEFTEEYPNK[MT7]PPTVR.4b4_1.heavy 581.32 / 601.368 113611.0 31.9822998046875 44 14 10 10 10 1.6520135071902986 40.722800510428634 0.0 3 0.9337980497756039 4.769813822593404 113611.0 125.91066383774452 0.0 - - - - - - - 372.0 227 1 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2281 288 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10662.[MT7]-RVSAIVEQSWR.3b4_1.heavy 492.28 / 558.348 71332.0 27.428600311279297 50 20 10 10 10 9.228172516856711 10.836381723178045 0.0 3 0.9932963428887729 15.064806629231086 71332.0 63.584735471732806 0.0 - - - - - - - 339.5 142 2 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2283 288 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10662.[MT7]-RVSAIVEQSWR.3b5_1.heavy 492.28 / 671.432 64765.0 27.428600311279297 50 20 10 10 10 9.228172516856711 10.836381723178045 0.0 3 0.9932963428887729 15.064806629231086 64765.0 44.58979542567755 0.0 - - - - - - - 226.0 129 4 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2285 288 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10662.[MT7]-RVSAIVEQSWR.3y4_1.heavy 492.28 / 576.289 48913.0 27.428600311279297 50 20 10 10 10 9.228172516856711 10.836381723178045 0.0 3 0.9932963428887729 15.064806629231086 48913.0 75.0968571192703 0.0 - - - - - - - 388.14285714285717 97 7 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2287 288 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10662.[MT7]-RVSAIVEQSWR.3y5_1.heavy 492.28 / 705.331 70653.0 27.428600311279297 50 20 10 10 10 9.228172516856711 10.836381723178045 0.0 3 0.9932963428887729 15.064806629231086 70653.0 158.9163299300054 0.0 - - - - - - - 396.25 141 4 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2289 289 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10762.[MT7]-LENSTQAEEGFDVPDC[CAM]K[MT7]K[MT7].4y5_1.heavy 625.565 / 935.522 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2291 289 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10762.[MT7]-LENSTQAEEGFDVPDC[CAM]K[MT7]K[MT7].4b4_1.heavy 625.565 / 588.311 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2293 289 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10762.[MT7]-LENSTQAEEGFDVPDC[CAM]K[MT7]K[MT7].4y3_1.heavy 625.565 / 723.443 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2295 289 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10762.[MT7]-LENSTQAEEGFDVPDC[CAM]K[MT7]K[MT7].4b3_1.heavy 625.565 / 501.279 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2297 290 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9632.[MT7]-GEAIK[MT7].2y4_1.heavy 403.255 / 604.379 7805.0 16.30229949951172 40 20 2 10 8 56.69834030774758 1.76372005701083 0.0 4 0.999526249690816 56.698356391759944 7805.0 24.803743138103357 1.0 - - - - - - - 262.2857142857143 46 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 2299 290 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9632.[MT7]-GEAIK[MT7].2b4_1.heavy 403.255 / 515.295 N/A 16.30229949951172 40 20 2 10 8 56.69834030774758 1.76372005701083 0.0 4 0.999526249690816 56.698356391759944 10560.0 2.874199021250273 3.0 - - - - - - - 459.0 99 1 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 2301 290 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9632.[MT7]-GEAIK[MT7].2y3_1.heavy 403.255 / 475.336 13621.0 16.30229949951172 40 20 2 10 8 56.69834030774758 1.76372005701083 0.0 4 0.999526249690816 56.698356391759944 13621.0 24.704754901960783 1.0 - - - - - - - 382.5 60 6 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 2303 290 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9632.[MT7]-GEAIK[MT7].2y1_1.heavy 403.255 / 291.215 N/A 16.30229949951172 40 20 2 10 8 56.69834030774758 1.76372005701083 0.0 4 0.999526249690816 56.698356391759944 18212.0 2.3069558473031213 11.0 - - - - - - - 3979.0 101 1 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 2305 291 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10761.[MT7]-NLVVVNQQESSDSGTSVSENR.3b4_1.heavy 798.394 / 570.373 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2307 291 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10761.[MT7]-NLVVVNQQESSDSGTSVSENR.3b5_1.heavy 798.394 / 669.442 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2309 291 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10761.[MT7]-NLVVVNQQESSDSGTSVSENR.3y4_1.heavy 798.394 / 505.237 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2311 291 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10761.[MT7]-NLVVVNQQESSDSGTSVSENR.3y9_1.heavy 798.394 / 936.438 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2313 292 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9631.[MT7]-AEMFR.2b3_1.heavy 399.208 / 476.229 8357.0 23.81790065765381 43 17 10 6 10 11.253505351202863 8.886120091399896 0.03899955749511719 3 0.9769586518767643 8.114672328712246 8357.0 22.704987012209884 0.0 - - - - - - - 313.2307692307692 16 13 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 2315 292 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9631.[MT7]-AEMFR.2y4_1.heavy 399.208 / 582.27 8785.0 23.81790065765381 43 17 10 6 10 11.253505351202863 8.886120091399896 0.03899955749511719 3 0.9769586518767643 8.114672328712246 8785.0 25.738084699126688 0.0 - - - - - - - 402.125 17 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 2317 292 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9631.[MT7]-AEMFR.2b4_1.heavy 399.208 / 623.298 4928.0 23.81790065765381 43 17 10 6 10 11.253505351202863 8.886120091399896 0.03899955749511719 3 0.9769586518767643 8.114672328712246 4928.0 7.664968941168786 0.0 - - - - - - - 367.57142857142856 9 7 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 2319 292 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9631.[MT7]-AEMFR.2y3_1.heavy 399.208 / 453.228 5143.0 23.81790065765381 43 17 10 6 10 11.253505351202863 8.886120091399896 0.03899955749511719 3 0.9769586518767643 8.114672328712246 5143.0 30.34886535079432 0.0 - - - - - - - 300.0 10 10 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 2321 293 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10760.[MT7]-AISETEENSDELSGER.3y7_1.heavy 637.296 / 805.369 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2323 293 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10760.[MT7]-AISETEENSDELSGER.3y6_1.heavy 637.296 / 690.342 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2325 293 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10760.[MT7]-AISETEENSDELSGER.3b4_1.heavy 637.296 / 545.305 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2327 293 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10760.[MT7]-AISETEENSDELSGER.3y5_1.heavy 637.296 / 561.299 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 2329 294 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10669.[MT7]-DHIGK[MT7].2b3_1.heavy 429.258 / 510.279 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2331 294 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10669.[MT7]-DHIGK[MT7].2y4_1.heavy 429.258 / 598.379 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2333 294 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10669.[MT7]-DHIGK[MT7].2y3_1.heavy 429.258 / 461.32 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2335 294 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10669.[MT7]-DHIGK[MT7].2y2_1.heavy 429.258 / 348.236 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2337 295 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10668.[MT7]-NVPNSR.2y4_1.heavy 415.734 / 473.247 24437.0 13.894499778747559 40 20 2 10 8 11.9132545911423 8.39401183236289 0.0 4 0.9985039153920067 31.902897780587757 24437.0 84.56569974554708 1.0 - - - - - - - 282.125 110 16 BRCA2 breast cancer 2, early onset 2339 295 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10668.[MT7]-NVPNSR.2y5_1.heavy 415.734 / 572.315 11875.0 13.894499778747559 40 20 2 10 8 11.9132545911423 8.39401183236289 0.0 4 0.9985039153920067 31.902897780587757 11875.0 23.964447261742652 0.0 - - - - - - - 748.25 23 8 BRCA2 breast cancer 2, early onset 2341 295 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10668.[MT7]-NVPNSR.2b4_1.heavy 415.734 / 569.316 2846.0 13.894499778747559 40 20 2 10 8 11.9132545911423 8.39401183236289 0.0 4 0.9985039153920067 31.902897780587757 2846.0 4.541609756603584 1.0 - - - - - - - 250.15 5 20 BRCA2 breast cancer 2, early onset 2343 295 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10668.[MT7]-NVPNSR.2b5_1.heavy 415.734 / 656.348 1570.0 13.894499778747559 40 20 2 10 8 11.9132545911423 8.39401183236289 0.0 4 0.9985039153920067 31.902897780587757 1570.0 1.8264942164738824 11.0 - - - - - - - 274.75 19 20 BRCA2 breast cancer 2, early onset 2345 296 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9628.[MT7]-SQWSPALTVSK[MT7].3b6_1.heavy 497.952 / 801.401 15446.0 28.871749877929688 42 17 10 5 10 2.648455180315889 25.583273800034327 0.04470062255859375 3 0.9790005779918627 8.501503965578838 15446.0 43.171813134315215 0.0 - - - - - - - 331.0 30 4 UBE2D4;UBE2D1 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2347 296 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9628.[MT7]-SQWSPALTVSK[MT7].3b4_1.heavy 497.952 / 633.311 16550.0 28.871749877929688 42 17 10 5 10 2.648455180315889 25.583273800034327 0.04470062255859375 3 0.9790005779918627 8.501503965578838 16550.0 25.076821442053607 0.0 - - - - - - - 294.3333333333333 33 3 UBE2D4;UBE2D1 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2349 296 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9628.[MT7]-SQWSPALTVSK[MT7].3b3_1.heavy 497.952 / 546.279 8827.0 28.871749877929688 42 17 10 5 10 2.648455180315889 25.583273800034327 0.04470062255859375 3 0.9790005779918627 8.501503965578838 8827.0 10.790463431594329 0.0 - - - - - - - 346.7142857142857 17 7 UBE2D4;UBE2D1 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2351 296 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9628.[MT7]-SQWSPALTVSK[MT7].3y4_1.heavy 497.952 / 578.363 19860.0 28.871749877929688 42 17 10 5 10 2.648455180315889 25.583273800034327 0.04470062255859375 3 0.9790005779918627 8.501503965578838 19860.0 38.60759824179706 0.0 - - - - - - - 744.875 39 8 UBE2D4;UBE2D1 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2353 297 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9625.[MT7]-VAFTTK[MT7].2y4_1.heavy 477.797 / 640.379 34156.0 23.534700393676758 50 20 10 10 10 30.419872339622465 3.2873247751848087 0.0 3 0.9995608857736497 58.89219245253877 34156.0 56.92666666666666 0.0 - - - - - - - 1137.5714285714287 68 7 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2355 297 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9625.[MT7]-VAFTTK[MT7].2y5_1.heavy 477.797 / 711.416 84238.0 23.534700393676758 50 20 10 10 10 30.419872339622465 3.2873247751848087 0.0 3 0.9995608857736497 58.89219245253877 84238.0 148.67063377015165 0.0 - - - - - - - 349.3333333333333 168 3 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2357 297 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9625.[MT7]-VAFTTK[MT7].2b4_1.heavy 477.797 / 563.331 3143.0 23.534700393676758 50 20 10 10 10 30.419872339622465 3.2873247751848087 0.0 3 0.9995608857736497 58.89219245253877 3143.0 4.750835322195704 2.0 - - - - - - - 331.9166666666667 6 12 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2359 297 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9625.[MT7]-VAFTTK[MT7].2y3_1.heavy 477.797 / 493.31 46100.0 23.534700393676758 50 20 10 10 10 30.419872339622465 3.2873247751848087 0.0 3 0.9995608857736497 58.89219245253877 46100.0 229.73769178315717 0.0 - - - - - - - 239.85714285714286 92 7 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2361 298 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9002.[MT7]-VFQDR.2b3_1.heavy 404.725 / 519.305 10361.0 20.740999221801758 41 17 6 10 8 3.121175644967515 32.039209379721015 0.0 4 0.9794926610630993 8.603253572542412 10361.0 5.849821500299207 1.0 - - - - - - - 753.375 20 8 CUL4B;CUL4A cullin 4B;cullin 4A 2363 298 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9002.[MT7]-VFQDR.2y4_1.heavy 404.725 / 565.273 48977.0 20.740999221801758 41 17 6 10 8 3.121175644967515 32.039209379721015 0.0 4 0.9794926610630993 8.603253572542412 48977.0 44.05562302595566 0.0 - - - - - - - 753.3333333333334 97 9 CUL4B;CUL4A cullin 4B;cullin 4A 2365 298 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9002.[MT7]-VFQDR.2b4_1.heavy 404.725 / 634.332 27126.0 20.740999221801758 41 17 6 10 8 3.121175644967515 32.039209379721015 0.0 4 0.9794926610630993 8.603253572542412 27126.0 20.940503182325585 0.0 - - - - - - - 1295.375 54 8 CUL4B;CUL4A cullin 4B;cullin 4A 2367 298 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9002.[MT7]-VFQDR.2y1_1.heavy 404.725 / 175.119 40689.0 20.740999221801758 41 17 6 10 8 3.121175644967515 32.039209379721015 0.0 4 0.9794926610630993 8.603253572542412 40689.0 11.422907309105756 1.0 - - - - - - - 1884.0 148 2 CUL4B;CUL4A cullin 4B;cullin 4A 2369 299 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9626.[MT7]-EWTQK[MT7].2b3_1.heavy 490.276 / 561.279 4068.0 20.340599060058594 47 17 10 10 10 4.772144739481247 20.95493859871284 0.0 3 0.9732544323237587 7.529458149807921 4068.0 16.492635272189023 1.0 - - - - - - - 267.22222222222223 8 9 UBE2D4;UBE2D1;UBE2D2;UBE2D3 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 2371 299 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9626.[MT7]-EWTQK[MT7].2y4_1.heavy 490.276 / 706.4 38274.0 20.340599060058594 47 17 10 10 10 4.772144739481247 20.95493859871284 0.0 3 0.9732544323237587 7.529458149807921 38274.0 64.71170424909775 0.0 - - - - - - - 1294.0 76 7 UBE2D4;UBE2D1;UBE2D2;UBE2D3 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 2373 299 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9626.[MT7]-EWTQK[MT7].2b4_1.heavy 490.276 / 689.338 7396.0 20.340599060058594 47 17 10 10 10 4.772144739481247 20.95493859871284 0.0 3 0.9732544323237587 7.529458149807921 7396.0 17.765971176740884 0.0 - - - - - - - 287.77777777777777 14 9 UBE2D4;UBE2D1;UBE2D2;UBE2D3 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 2375 299 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9626.[MT7]-EWTQK[MT7].2y3_1.heavy 490.276 / 520.321 23297.0 20.340599060058594 47 17 10 10 10 4.772144739481247 20.95493859871284 0.0 3 0.9732544323237587 7.529458149807921 23297.0 57.94470855165355 0.0 - - - - - - - 285.90909090909093 46 11 UBE2D4;UBE2D1;UBE2D2;UBE2D3 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 2377 300 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9142.[MT7]-DLDLC[CAM]K[MT7].2y4_1.heavy 526.288 / 679.357 11319.0 24.333224296569824 38 14 10 6 8 1.9060002664050357 41.47954053003847 0.038700103759765625 4 0.9403275420819628 5.026801842902307 11319.0 10.400590719865546 0.0 - - - - - - - 348.2 22 5 POLE polymerase (DNA directed), epsilon 2379 300 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9142.[MT7]-DLDLC[CAM]K[MT7].2y5_1.heavy 526.288 / 792.441 16761.0 24.333224296569824 38 14 10 6 8 1.9060002664050357 41.47954053003847 0.038700103759765625 4 0.9403275420819628 5.026801842902307 16761.0 62.01667360194328 1.0 - - - - - - - 290.3333333333333 53 12 POLE polymerase (DNA directed), epsilon 2381 300 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9142.[MT7]-DLDLC[CAM]K[MT7].2y3_1.heavy 526.288 / 564.33 27644.0 24.333224296569824 38 14 10 6 8 1.9060002664050357 41.47954053003847 0.038700103759765625 4 0.9403275420819628 5.026801842902307 27644.0 41.91750912079993 0.0 - - - - - - - 326.5 55 2 POLE polymerase (DNA directed), epsilon 2383 300 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9142.[MT7]-DLDLC[CAM]K[MT7].2b5_1.heavy 526.288 / 761.362 3483.0 24.333224296569824 38 14 10 6 8 1.9060002664050357 41.47954053003847 0.038700103759765625 4 0.9403275420819628 5.026801842902307 3483.0 9.98979239301025 7.0 - - - - - - - 746.4285714285714 23 7 POLE polymerase (DNA directed), epsilon 2385 301 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9627.[MT7]-ELTDLQR.2y5_1.heavy 509.786 / 632.336 3826.0 23.79840087890625 34 20 0 10 4 16.778715569631128 5.959931770998992 0.0 7 0.9925265090334394 14.266904914789967 3826.0 12.918376470588235 4.0 - - - - - - - 717.5 73 8 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2387 301 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9627.[MT7]-ELTDLQR.2b4_1.heavy 509.786 / 603.311 10629.0 23.79840087890625 34 20 0 10 4 16.778715569631128 5.959931770998992 0.0 7 0.9925265090334394 14.266904914789967 10629.0 34.38794117647059 0.0 - - - - - - - 340.2 21 10 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2389 301 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9627.[MT7]-ELTDLQR.2y6_1.heavy 509.786 / 745.42 7440.0 23.79840087890625 34 20 0 10 4 16.778715569631128 5.959931770998992 0.0 7 0.9925265090334394 14.266904914789967 7440.0 14.462162743993606 2.0 - - - - - - - 297.8 103 10 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2391 301 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9627.[MT7]-ELTDLQR.2b5_1.heavy 509.786 / 716.395 3614.0 23.79840087890625 34 20 0 10 4 16.778715569631128 5.959931770998992 0.0 7 0.9925265090334394 14.266904914789967 3614.0 21.22289312344656 0.0 - - - - - - - 310.84615384615387 7 13 UBE2D4 ubiquitin-conjugating enzyme E2D 4 (putative) 2393 302 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9147.[MT7]-TSPSC[CAM]AFR.2y5_1.heavy 535.264 / 640.287 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 2395 302 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9147.[MT7]-TSPSC[CAM]AFR.2b4_1.heavy 535.264 / 517.274 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 2397 302 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9147.[MT7]-TSPSC[CAM]AFR.2y6_1.heavy 535.264 / 737.34 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 2399 302 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9147.[MT7]-TSPSC[CAM]AFR.2y7_1.heavy 535.264 / 824.372 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14A CDC14 cell division cycle 14 homolog A (S. cerevisiae) 2401 303 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9148.[MT7]-ILDAPEIR.2y5_1.heavy 535.82 / 585.336 73827.0 29.80139923095703 46 18 8 10 10 5.948642212189477 16.810558852419813 0.0 3 0.9897558233286015 12.182948055424497 73827.0 167.77126394227 0.0 - - - - - - - 1255.0 147 8 CDC20 cell division cycle 20 homolog (S. cerevisiae) 2403 303 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9148.[MT7]-ILDAPEIR.2b4_1.heavy 535.82 / 557.341 20705.0 29.80139923095703 46 18 8 10 10 5.948642212189477 16.810558852419813 0.0 3 0.9897558233286015 12.182948055424497 20705.0 37.64194526505618 1.0 - - - - - - - 418.0 198 5 CDC20 cell division cycle 20 homolog (S. cerevisiae) 2405 303 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9148.[MT7]-ILDAPEIR.2y6_1.heavy 535.82 / 700.362 24469.0 29.80139923095703 46 18 8 10 10 5.948642212189477 16.810558852419813 0.0 3 0.9897558233286015 12.182948055424497 24469.0 51.61444681935838 0.0 - - - - - - - 657.0 48 7 CDC20 cell division cycle 20 homolog (S. cerevisiae) 2407 303 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9148.[MT7]-ILDAPEIR.2y7_1.heavy 535.82 / 813.446 47893.0 29.80139923095703 46 18 8 10 10 5.948642212189477 16.810558852419813 0.0 3 0.9897558233286015 12.182948055424497 47893.0 63.10420901046432 0.0 - - - - - - - 717.0 95 7 CDC20 cell division cycle 20 homolog (S. cerevisiae) 2409 304 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10676.[MT7]-NAGLISTLK[MT7].3y3_1.heavy 402.255 / 505.347 1733.0 29.02079963684082 48 18 10 10 10 3.837292651169781 26.06004000490175 0.0 3 0.987578120825859 11.061604571685045 1733.0 3.4821247113163976 2.0 - - - - - - - 271.0 3 4 BRCA2 breast cancer 2, early onset 2411 304 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10676.[MT7]-NAGLISTLK[MT7].3b4_1.heavy 402.255 / 500.295 N/A 29.02079963684082 48 18 10 10 10 3.837292651169781 26.06004000490175 0.0 3 0.987578120825859 11.061604571685045 6283.0 45.747188940092165 0.0 - - - - - - - 253.0 12 6 BRCA2 breast cancer 2, early onset 2413 304 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10676.[MT7]-NAGLISTLK[MT7].3y2_1.heavy 402.255 / 404.299 6716.0 29.02079963684082 48 18 10 10 10 3.837292651169781 26.06004000490175 0.0 3 0.987578120825859 11.061604571685045 6716.0 16.541237164682894 0.0 - - - - - - - 340.42857142857144 13 7 BRCA2 breast cancer 2, early onset 2415 304 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10676.[MT7]-NAGLISTLK[MT7].3y4_1.heavy 402.255 / 592.379 6066.0 29.02079963684082 48 18 10 10 10 3.837292651169781 26.06004000490175 0.0 3 0.987578120825859 11.061604571685045 6066.0 41.96315492597993 0.0 - - - - - - - 289.0 12 3 BRCA2 breast cancer 2, early onset 2417 305 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10675.[MT7]-EAASHGFGK[MT7].3y3_1.heavy 397.884 / 495.305 15575.0 17.808799743652344 50 20 10 10 10 29.127549442893446 3.433175873447811 0.0 3 0.9976013904567039 25.193919905693534 15575.0 52.84458980791118 0.0 - - - - - - - 339.0 31 6 BRCA2 breast cancer 2, early onset 2419 305 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10675.[MT7]-EAASHGFGK[MT7].3b4_1.heavy 397.884 / 503.258 16083.0 17.808799743652344 50 20 10 10 10 29.127549442893446 3.433175873447811 0.0 3 0.9976013904567039 25.193919905693534 16083.0 36.88325787401574 0.0 - - - - - - - 583.1111111111111 32 9 BRCA2 breast cancer 2, early onset 2421 305 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10675.[MT7]-EAASHGFGK[MT7].3y4_1.heavy 397.884 / 552.326 26748.0 17.808799743652344 50 20 10 10 10 29.127549442893446 3.433175873447811 0.0 3 0.9976013904567039 25.193919905693534 26748.0 145.96991150442477 0.0 - - - - - - - 244.55555555555554 53 9 BRCA2 breast cancer 2, early onset 2423 305 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10675.[MT7]-EAASHGFGK[MT7].3y2_1.heavy 397.884 / 348.236 24547.0 17.808799743652344 50 20 10 10 10 29.127549442893446 3.433175873447811 0.0 3 0.9976013904567039 25.193919905693534 24547.0 24.486188155069627 0.0 - - - - - - - 1209.142857142857 49 7 BRCA2 breast cancer 2, early onset 2425 306 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10678.[MT7]-DFLTSENSLPR.2y8_1.heavy 711.871 / 903.453 6372.0 30.182950019836426 38 20 6 6 6 3.5718946187686083 22.181466432819512 0.03989982604980469 5 0.9915862282697597 13.44503793133204 6372.0 5.580107358913914 0.0 - - - - - - - 704.8571428571429 12 7 BRCA2 breast cancer 2, early onset 2427 306 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10678.[MT7]-DFLTSENSLPR.2y9_1.heavy 711.871 / 1016.54 3083.0 30.182950019836426 38 20 6 6 6 3.5718946187686083 22.181466432819512 0.03989982604980469 5 0.9915862282697597 13.44503793133204 3083.0 4.696952998379254 0.0 - - - - - - - 257.25 6 8 BRCA2 breast cancer 2, early onset 2429 306 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10678.[MT7]-DFLTSENSLPR.2y10_1.heavy 711.871 / 1163.61 3289.0 30.182950019836426 38 20 6 6 6 3.5718946187686083 22.181466432819512 0.03989982604980469 5 0.9915862282697597 13.44503793133204 3289.0 15.648641367254859 0.0 - - - - - - - 264.57142857142856 6 7 BRCA2 breast cancer 2, early onset 2431 306 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10678.[MT7]-DFLTSENSLPR.2y7_1.heavy 711.871 / 802.405 4728.0 30.182950019836426 38 20 6 6 6 3.5718946187686083 22.181466432819512 0.03989982604980469 5 0.9915862282697597 13.44503793133204 4728.0 12.784799663188648 2.0 - - - - - - - 693.875 19 8 BRCA2 breast cancer 2, early onset 2433 307 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10677.[MT7]-DLLDTENK[MT7].2y4_1.heavy 618.34 / 635.348 15465.0 24.655000686645508 35 17 0 10 8 3.0171765495833807 33.14356927963272 0.0 4 0.9782890783376311 8.360540379614159 15465.0 25.409459494067306 0.0 - - - - - - - 331.5 30 8 BRCA2 breast cancer 2, early onset 2435 307 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10677.[MT7]-DLLDTENK[MT7].2y5_1.heavy 618.34 / 750.375 11267.0 24.655000686645508 35 17 0 10 8 3.0171765495833807 33.14356927963272 0.0 4 0.9782890783376311 8.360540379614159 11267.0 23.621613876319756 0.0 - - - - - - - 331.5 22 6 BRCA2 breast cancer 2, early onset 2437 307 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10677.[MT7]-DLLDTENK[MT7].2b4_1.heavy 618.34 / 601.331 N/A 24.655000686645508 35 17 0 10 8 3.0171765495833807 33.14356927963272 0.0 4 0.9782890783376311 8.360540379614159 17895.0 10.53169431120259 0.0 - - - - - - - 1187.875 123 8 BRCA2 breast cancer 2, early onset 2439 307 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10677.[MT7]-DLLDTENK[MT7].2y7_1.heavy 618.34 / 976.543 3535.0 24.655000686645508 35 17 0 10 8 3.0171765495833807 33.14356927963272 0.0 4 0.9782890783376311 8.360540379614159 3535.0 3.421209710359454 2.0 - - - - - - - 294.6666666666667 12 9 BRCA2 breast cancer 2, early onset 2441 308 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10671.[MT7]-ISSLPK[MT7].2y4_1.heavy 466.805 / 588.384 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2443 308 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10671.[MT7]-ISSLPK[MT7].2y5_1.heavy 466.805 / 675.416 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2445 308 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10671.[MT7]-ISSLPK[MT7].2b4_1.heavy 466.805 / 545.341 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2447 308 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10671.[MT7]-ISSLPK[MT7].2y3_1.heavy 466.805 / 501.352 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2449 309 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9720.[MT7]-VTTVVATPGQGPDRPQEVSYTDTK[MT7].4b4_1.heavy 709.375 / 545.341 31674.0 24.836350440979004 45 20 10 5 10 6.258264466136959 15.978870905998484 0.04070091247558594 3 0.9924990675831099 14.24075128760827 31674.0 41.634246214614876 0.0 - - - - - - - 372.0 63 7 GSK3B glycogen synthase kinase 3 beta 2451 309 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9720.[MT7]-VTTVVATPGQGPDRPQEVSYTDTK[MT7].4b5_1.heavy 709.375 / 644.41 22562.0 24.836350440979004 45 20 10 5 10 6.258264466136959 15.978870905998484 0.04070091247558594 3 0.9924990675831099 14.24075128760827 22562.0 38.1231950844854 0.0 - - - - - - - 434.0 45 3 GSK3B glycogen synthase kinase 3 beta 2453 309 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9720.[MT7]-VTTVVATPGQGPDRPQEVSYTDTK[MT7].4y17_2.heavy 709.375 / 1010 16488.0 24.836350440979004 45 20 10 5 10 6.258264466136959 15.978870905998484 0.04070091247558594 3 0.9924990675831099 14.24075128760827 16488.0 107.51391705069125 0.0 - - - - - - - 325.5 32 6 GSK3B glycogen synthase kinase 3 beta 2455 309 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9720.[MT7]-VTTVVATPGQGPDRPQEVSYTDTK[MT7].4b6_1.heavy 709.375 / 715.447 15837.0 24.836350440979004 45 20 10 5 10 6.258264466136959 15.978870905998484 0.04070091247558594 3 0.9924990675831099 14.24075128760827 15837.0 30.871202764976957 0.0 - - - - - - - 795.6666666666666 31 9 GSK3B glycogen synthase kinase 3 beta 2457 310 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10673.[MT7]-TSGNSFK[MT7].2y5_1.heavy 514.784 / 696.38 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2459 310 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10673.[MT7]-TSGNSFK[MT7].2b4_1.heavy 514.784 / 504.253 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2461 310 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10673.[MT7]-TSGNSFK[MT7].2y3_1.heavy 514.784 / 525.315 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2463 310 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10673.[MT7]-TSGNSFK[MT7].2y6_1.heavy 514.784 / 783.412 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2465 311 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9622.[MT7]-RFTDAGFDHHDLFFADGSTPTDAIVK[MT7].4b8_1.heavy 792.896 / 1054.51 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2467 311 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9622.[MT7]-RFTDAGFDHHDLFFADGSTPTDAIVK[MT7].4b11_2.heavy 792.896 / 722.33 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2469 311 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9622.[MT7]-RFTDAGFDHHDLFFADGSTPTDAIVK[MT7].4b4_1.heavy 792.896 / 664.354 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2471 311 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9622.[MT7]-RFTDAGFDHHDLFFADGSTPTDAIVK[MT7].4y7_1.heavy 792.896 / 887.532 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2473 312 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9621.[MT7]-EFLDIC[CAM]ENAEGAIAVHC[CAM]K[MT7].3y3_1.heavy 788.724 / 588.304 3439.0 33.28950119018555 32 12 4 10 6 1.2973814982379817 50.91925697488951 0.0 5 0.8982648829049876 3.8359624160211947 3439.0 4.139825146567672 1.0 - - - - - - - 666.5 11 8 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2475 312 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9621.[MT7]-EFLDIC[CAM]ENAEGAIAVHC[CAM]K[MT7].3b4_1.heavy 788.724 / 649.331 3267.0 33.28950119018555 32 12 4 10 6 1.2973814982379817 50.91925697488951 0.0 5 0.8982648829049876 3.8359624160211947 3267.0 2.5162955844347503 2.0 - - - - - - - 1203.7 12 10 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2477 312 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9621.[MT7]-EFLDIC[CAM]ENAEGAIAVHC[CAM]K[MT7].3b5_1.heavy 788.724 / 762.415 2063.0 33.28950119018555 32 12 4 10 6 1.2973814982379817 50.91925697488951 0.0 5 0.8982648829049876 3.8359624160211947 2063.0 -0.3560252024064784 6.0 - - - - - - - 258.0 4 6 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2479 312 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9621.[MT7]-EFLDIC[CAM]ENAEGAIAVHC[CAM]K[MT7].3y8_1.heavy 788.724 / 999.553 1375.0 33.28950119018555 32 12 4 10 6 1.2973814982379817 50.91925697488951 0.0 5 0.8982648829049876 3.8359624160211947 1375.0 1.9985465116279069 1.0 - - - - - - - 238.15384615384616 12 13 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2481 313 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9620.[MT7]-TNAIPLTVILQSSVQSC[CAM]K[MT7].3y7_1.heavy 749.759 / 939.469 7624.0 39.27429962158203 50 20 10 10 10 8.756212617294013 11.420462746929463 0.0 3 0.9954048093777069 18.198858908118893 7624.0 13.131383785496917 0.0 - - - - - - - 284.07142857142856 15 14 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2483 313 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9620.[MT7]-TNAIPLTVILQSSVQSC[CAM]K[MT7].3y3_1.heavy 749.759 / 538.278 8122.0 39.27429962158203 50 20 10 10 10 8.756212617294013 11.420462746929463 0.0 3 0.9954048093777069 18.198858908118893 8122.0 9.935778349285682 0.0 - - - - - - - 890.75 16 8 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2485 313 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9620.[MT7]-TNAIPLTVILQSSVQSC[CAM]K[MT7].3b4_1.heavy 749.759 / 544.321 26354.0 39.27429962158203 50 20 10 10 10 8.756212617294013 11.420462746929463 0.0 3 0.9954048093777069 18.198858908118893 26354.0 38.469059953932565 0.0 - - - - - - - 828.7777777777778 52 9 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2487 313 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9620.[MT7]-TNAIPLTVILQSSVQSC[CAM]K[MT7].3y4_1.heavy 749.759 / 666.336 5138.0 39.27429962158203 50 20 10 10 10 8.756212617294013 11.420462746929463 0.0 3 0.9954048093777069 18.198858908118893 5138.0 11.120708898944192 0.0 - - - - - - - 805.0 10 7 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2489 314 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9008.[MT7]-VSGMQR.2y4_1.heavy 411.225 / 491.24 10071.0 16.851499557495117 39 13 10 10 6 2.5611282521981606 39.04529182174777 0.0 5 0.9135450685366103 4.166657150691331 10071.0 15.249484178657983 3.0 - - - - - - - 314.8333333333333 63 6 GADD45B growth arrest and DNA-damage-inducible, beta 2491 314 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9008.[MT7]-VSGMQR.2y5_1.heavy 411.225 / 578.271 72854.0 16.851499557495117 39 13 10 10 6 2.5611282521981606 39.04529182174777 0.0 5 0.9135450685366103 4.166657150691331 72854.0 101.52444180175186 0.0 - - - - - - - 251.8 145 5 GADD45B growth arrest and DNA-damage-inducible, beta 2493 314 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9008.[MT7]-VSGMQR.2b4_1.heavy 411.225 / 519.272 7710.0 16.851499557495117 39 13 10 10 6 2.5611282521981606 39.04529182174777 0.0 5 0.9135450685366103 4.166657150691331 7710.0 14.107242693773824 1.0 - - - - - - - 741.5714285714286 16 7 GADD45B growth arrest and DNA-damage-inducible, beta 2495 314 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9008.[MT7]-VSGMQR.2y1_1.heavy 411.225 / 175.119 14476.0 16.851499557495117 39 13 10 10 6 2.5611282521981606 39.04529182174777 0.0 5 0.9135450685366103 4.166657150691331 14476.0 1.6629802079228244 4.0 - - - - - - - 1888.0 57 1 GADD45B growth arrest and DNA-damage-inducible, beta 2497 315 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9619.[MT7]-K[MT7]IVHFTGSDQRK[MT7].4y8_2.heavy 462.776 / 541.789 6681.0 18.472000122070312 27 11 0 10 6 1.1476712374668672 55.0679420447239 0.0 5 0.8710103517096577 3.3986164484456314 6681.0 7.381565965803012 0.0 - - - - - - - 663.75 13 8 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2499 315 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9619.[MT7]-K[MT7]IVHFTGSDQRK[MT7].4b2_1.heavy 462.776 / 530.39 1542.0 18.472000122070312 27 11 0 10 6 1.1476712374668672 55.0679420447239 0.0 5 0.8710103517096577 3.3986164484456314 1542.0 1.8008759124087588 7.0 - - - - - - - 582.5 59 10 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2501 315 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9619.[MT7]-K[MT7]IVHFTGSDQRK[MT7].4b9_2.heavy 462.776 / 637.361 2570.0 18.472000122070312 27 11 0 10 6 1.1476712374668672 55.0679420447239 0.0 5 0.8710103517096577 3.3986164484456314 2570.0 5.9934111759799835 3.0 - - - - - - - 636.4285714285714 9 7 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2503 315 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9619.[MT7]-K[MT7]IVHFTGSDQRK[MT7].4b3_1.heavy 462.776 / 629.459 2398.0 18.472000122070312 27 11 0 10 6 1.1476712374668672 55.0679420447239 0.0 5 0.8710103517096577 3.3986164484456314 2398.0 9.301087679096096 1.0 - - - - - - - 199.66666666666666 4 6 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2505 316 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9015.[MT7]-ETPSK[MT7].2y4_1.heavy 425.25 / 576.347 20787.0 14.206299781799316 29 14 4 10 1 1.027836068355529 61.75650475064793 0.0 19 0.9305281090391533 4.654905702639696 20787.0 17.036160410044598 0.0 - - - - - - - 314.8333333333333 41 12 ORC2;MLL3;SH3TC2 origin recognition complex, subunit 2;myeloid/lymphoid or mixed-lineage leukemia 3;SH3 domain and tetratricopeptide repeats 2 2507 316 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9015.[MT7]-ETPSK[MT7].2y3_1.heavy 425.25 / 475.3 35407.0 14.206299781799316 29 14 4 10 1 1.027836068355529 61.75650475064793 0.0 19 0.9305281090391533 4.654905702639696 35407.0 68.16864942528736 0.0 - - - - - - - 735.9 70 10 ORC2;MLL3;SH3TC2 origin recognition complex, subunit 2;myeloid/lymphoid or mixed-lineage leukemia 3;SH3 domain and tetratricopeptide repeats 2 2509 316 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9015.[MT7]-ETPSK[MT7].2y2_1.heavy 425.25 / 378.247 5172.0 14.206299781799316 29 14 4 10 1 1.027836068355529 61.75650475064793 0.0 19 0.9305281090391533 4.654905702639696 5172.0 9.299271777883831 5.0 - - - - - - - 1255.875 15 8 ORC2;MLL3;SH3TC2 origin recognition complex, subunit 2;myeloid/lymphoid or mixed-lineage leukemia 3;SH3 domain and tetratricopeptide repeats 2 2511 316 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9015.[MT7]-ETPSK[MT7].2y1_1.heavy 425.25 / 291.215 5968.0 14.206299781799316 29 14 4 10 1 1.027836068355529 61.75650475064793 0.0 19 0.9305281090391533 4.654905702639696 5968.0 2.099577808980372 20.0 - - - - - - - 2486.0 126 1 ORC2;MLL3;SH3TC2 origin recognition complex, subunit 2;myeloid/lymphoid or mixed-lineage leukemia 3;SH3 domain and tetratricopeptide repeats 2 2513 317 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9618.[MT7]-EGAGAALVAEVIK[MT7]DR.3y7_1.heavy 596.347 / 974.575 4936.0 35.16219902038574 42 16 10 6 10 2.5249864172095235 32.27796112073357 0.031200408935546875 3 0.9682472414238206 6.907417706956679 4936.0 17.5742954132786 0.0 - - - - - - - 227.28571428571428 9 7 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2515 317 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9618.[MT7]-EGAGAALVAEVIK[MT7]DR.3b6_1.heavy 596.347 / 601.306 8120.0 35.16219902038574 42 16 10 6 10 2.5249864172095235 32.27796112073357 0.031200408935546875 3 0.9682472414238206 6.907417706956679 8120.0 10.5266474646728 0.0 - - - - - - - 796.0 16 7 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2517 317 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9618.[MT7]-EGAGAALVAEVIK[MT7]DR.3b5_1.heavy 596.347 / 530.269 4458.0 35.16219902038574 42 16 10 6 10 2.5249864172095235 32.27796112073357 0.031200408935546875 3 0.9682472414238206 6.907417706956679 4458.0 3.6016157989228006 1.0 - - - - - - - 796.0 8 11 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2519 317 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9618.[MT7]-EGAGAALVAEVIK[MT7]DR.3b7_1.heavy 596.347 / 714.39 6846.0 35.16219902038574 42 16 10 6 10 2.5249864172095235 32.27796112073357 0.031200408935546875 3 0.9682472414238206 6.907417706956679 6846.0 9.313556742419458 0.0 - - - - - - - 778.3333333333334 13 9 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2521 318 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9152.[MT7]-EVEDGDK[MT7].2y5_1.heavy 540.277 / 707.333 4789.0 15.230949878692627 40 15 10 5 10 2.0451455787423725 39.02028171846418 0.041899681091308594 3 0.9550825825775143 5.801172910163263 4789.0 52.650189458561556 0.0 - - - - - - - 203.28571428571428 9 7 CUL4A cullin 4A 2523 318 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9152.[MT7]-EVEDGDK[MT7].2b4_1.heavy 540.277 / 617.29 8672.0 15.230949878692627 40 15 10 5 10 2.0451455787423725 39.02028171846418 0.041899681091308594 3 0.9550825825775143 5.801172910163263 8672.0 75.23987189847657 0.0 - - - - - - - 271.7 17 10 CUL4A cullin 4A 2525 318 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9152.[MT7]-EVEDGDK[MT7].2b6_1.heavy 540.277 / 789.338 5824.0 15.230949878692627 40 15 10 5 10 2.0451455787423725 39.02028171846418 0.041899681091308594 3 0.9550825825775143 5.801172910163263 5824.0 15.908996006315592 1.0 - - - - - - - 278.6923076923077 11 13 CUL4A cullin 4A 2527 318 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9152.[MT7]-EVEDGDK[MT7].2y6_1.heavy 540.277 / 806.401 7118.0 15.230949878692627 40 15 10 5 10 2.0451455787423725 39.02028171846418 0.041899681091308594 3 0.9550825825775143 5.801172910163263 7118.0 16.40663166047405 0.0 - - - - - - - 270.45454545454544 14 11 CUL4A cullin 4A 2529 319 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9616.[MT7]-TSEPNISGSAGITK[MT7].3b6_1.heavy 550.636 / 786.411 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2531 319 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9616.[MT7]-TSEPNISGSAGITK[MT7].3b5_1.heavy 550.636 / 673.327 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2533 319 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9616.[MT7]-TSEPNISGSAGITK[MT7].3y4_1.heavy 550.636 / 562.368 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2535 319 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9616.[MT7]-TSEPNISGSAGITK[MT7].3y5_1.heavy 550.636 / 633.405 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2537 320 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9011.[MT7]-LLGDQR.2y4_1.heavy 423.252 / 475.226 29396.0 22.44420051574707 46 16 10 10 10 2.687001979833821 37.21619885303715 0.0 3 0.9647335807101233 6.552348962723951 29396.0 74.71483333333333 0.0 - - - - - - - 360.0 58 5 CCND3 cyclin D3 2539 320 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9011.[MT7]-LLGDQR.2y5_1.heavy 423.252 / 588.31 104785.0 22.44420051574707 46 16 10 10 10 2.687001979833821 37.21619885303715 0.0 3 0.9647335807101233 6.552348962723951 104785.0 83.40549361953684 0.0 - - - - - - - 714.2857142857143 209 7 CCND3 cyclin D3 2541 320 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9011.[MT7]-LLGDQR.2b4_1.heavy 423.252 / 543.326 424340.0 22.44420051574707 46 16 10 10 10 2.687001979833821 37.21619885303715 0.0 3 0.9647335807101233 6.552348962723951 424340.0 368.1087321879873 0.0 - - - - - - - 300.0 848 2 CCND3 cyclin D3 2543 320 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9011.[MT7]-LLGDQR.2y2_1.heavy 423.252 / 303.177 600145.0 22.44420051574707 46 16 10 10 10 2.687001979833821 37.21619885303715 0.0 3 0.9647335807101233 6.552348962723951 600145.0 745.1256617411908 0.0 - - - - - - - 200.0 1200 1 CCND3 cyclin D3 2545 321 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9012.[MT7]-SLVNIR.2y4_1.heavy 423.27 / 501.314 8534.0 25.669300079345703 32 10 6 10 6 0.6538730170360934 76.49768445828724 0.0 5 0.8334466412245356 2.9810201403915593 8534.0 39.45415035124172 0.0 - - - - - - - 281.0 17 8 RNF157;MGRN1 ring finger protein 157;mahogunin, ring finger 1 2547 321 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9012.[MT7]-SLVNIR.2b3_1.heavy 423.27 / 444.294 8758.0 25.669300079345703 32 10 6 10 6 0.6538730170360934 76.49768445828724 0.0 5 0.8334466412245356 2.9810201403915593 8758.0 17.481216904130896 3.0 - - - - - - - 770.0 42 7 RNF157;MGRN1 ring finger protein 157;mahogunin, ring finger 1 2549 321 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9012.[MT7]-SLVNIR.2y5_1.heavy 423.27 / 614.398 20661.0 25.669300079345703 32 10 6 10 6 0.6538730170360934 76.49768445828724 0.0 5 0.8334466412245356 2.9810201403915593 20661.0 105.64770482553824 0.0 - - - - - - - 314.6 41 5 RNF157;MGRN1 ring finger protein 157;mahogunin, ring finger 1 2551 321 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9012.[MT7]-SLVNIR.2b4_1.heavy 423.27 / 558.337 14373.0 25.669300079345703 32 10 6 10 6 0.6538730170360934 76.49768445828724 0.0 5 0.8334466412245356 2.9810201403915593 14373.0 4.670993699478201 2.0 - - - - - - - 770.0 70 7 RNF157;MGRN1 ring finger protein 157;mahogunin, ring finger 1 2553 322 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9614.[MT7]-IVHFTGSDQRK[MT7].4y8_2.heavy 394.727 / 541.789 3166.0 20.77739906311035 47 17 10 10 10 3.907483049778375 25.591921634995145 0.0 3 0.9730849049614003 7.505601088690793 3166.0 20.937730509550466 0.0 - - - - - - - 232.5 6 8 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2555 322 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9614.[MT7]-IVHFTGSDQRK[MT7].4y6_2.heavy 394.727 / 417.731 6517.0 20.77739906311035 47 17 10 10 10 3.907483049778375 25.591921634995145 0.0 3 0.9730849049614003 7.505601088690793 6517.0 48.52712365591398 0.0 - - - - - - - 228.92307692307693 13 13 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2557 322 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9614.[MT7]-IVHFTGSDQRK[MT7].4y7_2.heavy 394.727 / 468.255 13593.0 20.77739906311035 47 17 10 10 10 3.907483049778375 25.591921634995145 0.0 3 0.9730849049614003 7.505601088690793 13593.0 23.723529696570125 0.0 - - - - - - - 217.0 27 6 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2559 322 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9614.[MT7]-IVHFTGSDQRK[MT7].4b3_1.heavy 394.727 / 494.321 8007.0 20.77739906311035 47 17 10 10 10 3.907483049778375 25.591921634995145 0.0 3 0.9730849049614003 7.505601088690793 8007.0 21.087236235750666 0.0 - - - - - - - 691.8571428571429 16 7 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2561 323 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9714.[MT7]-GEPNVSYIC[CAM]SR.2y8_1.heavy 713.349 / 998.472 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2563 323 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9714.[MT7]-GEPNVSYIC[CAM]SR.2b4_1.heavy 713.349 / 542.269 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2565 323 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9714.[MT7]-GEPNVSYIC[CAM]SR.2y9_1.heavy 713.349 / 1095.53 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2567 323 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9714.[MT7]-GEPNVSYIC[CAM]SR.2y6_1.heavy 713.349 / 785.361 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2569 324 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9010.[MT7]-AQEWR.2y4_1.heavy 417.223 / 618.299 24988.0 19.71269989013672 45 17 10 10 8 5.182001851100718 19.297561612942847 0.0 4 0.97858505036838 8.418326145849193 24988.0 19.496536007578072 2.0 - - - - - - - 217.2 118 5 KLHL9 kelch-like 9 (Drosophila) 2571 324 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9010.[MT7]-AQEWR.2b3_1.heavy 417.223 / 473.248 66997.0 19.71269989013672 45 17 10 10 8 5.182001851100718 19.297561612942847 0.0 4 0.97858505036838 8.418326145849193 66997.0 95.11052713390939 0.0 - - - - - - - 301.6666666666667 133 3 KLHL9 kelch-like 9 (Drosophila) 2573 324 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9010.[MT7]-AQEWR.2y3_1.heavy 417.223 / 490.241 6157.0 19.71269989013672 45 17 10 10 8 5.182001851100718 19.297561612942847 0.0 4 0.97858505036838 8.418326145849193 6157.0 10.737219094759224 0.0 - - - - - - - 253.4 12 10 KLHL9 kelch-like 9 (Drosophila) 2575 324 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9010.[MT7]-AQEWR.2y2_1.heavy 417.223 / 361.198 77500.0 19.71269989013672 45 17 10 10 8 5.182001851100718 19.297561612942847 0.0 4 0.97858505036838 8.418326145849193 77500.0 140.88994097938715 0.0 - - - - - - - 362.0 155 4 KLHL9 kelch-like 9 (Drosophila) 2577 325 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9715.[MT7]-DSSGTGHFTSGVR.3b6_1.heavy 484.571 / 649.291 12897.0 18.65130043029785 48 18 10 10 10 3.7706791185170507 21.155796636326997 0.0 3 0.9806249312744602 8.851910876155527 12897.0 93.34813509593195 0.0 - - - - - - - 261.5 25 14 GSK3B glycogen synthase kinase 3 beta 2579 325 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9715.[MT7]-DSSGTGHFTSGVR.3y6_1.heavy 484.571 / 666.357 13769.0 18.65130043029785 48 18 10 10 10 3.7706791185170507 21.155796636326997 0.0 3 0.9806249312744602 8.851910876155527 13769.0 19.95175612060869 0.0 - - - - - - - 283.375 27 8 GSK3B glycogen synthase kinase 3 beta 2581 325 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9715.[MT7]-DSSGTGHFTSGVR.3b5_1.heavy 484.571 / 592.269 871.0 18.65130043029785 48 18 10 10 10 3.7706791185170507 21.155796636326997 0.0 3 0.9806249312744602 8.851910876155527 871.0 1.498852772466539 31.0 - - - - - - - 755.0 18 9 GSK3B glycogen synthase kinase 3 beta 2583 325 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9715.[MT7]-DSSGTGHFTSGVR.3y5_1.heavy 484.571 / 519.289 15512.0 18.65130043029785 48 18 10 10 10 3.7706791185170507 21.155796636326997 0.0 3 0.9806249312744602 8.851910876155527 15512.0 54.25167476592504 0.0 - - - - - - - 296.5 31 10 GSK3B glycogen synthase kinase 3 beta 2585 326 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9154.[MT7]-RPAADGAER.2y8_1.heavy 543.792 / 786.374 17689.0 13.155799865722656 45 15 10 10 10 3.1616208745250938 31.62934582250346 0.0 3 0.9540454917057967 5.7348355222833405 17689.0 78.76274878603479 0.0 - - - - - - - 191.69230769230768 35 26 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 2587 326 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9154.[MT7]-RPAADGAER.2b7_1.heavy 543.792 / 783.423 1213.0 13.155799865722656 45 15 10 10 10 3.1616208745250938 31.62934582250346 0.0 3 0.9540454917057967 5.7348355222833405 1213.0 2.9906250000000005 2.0 - - - - - - - 148.1818181818182 2 22 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 2589 326 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9154.[MT7]-RPAADGAER.2b5_1.heavy 543.792 / 655.364 11559.0 13.155799865722656 45 15 10 10 10 3.1616208745250938 31.62934582250346 0.0 3 0.9540454917057967 5.7348355222833405 11559.0 49.831930517173305 0.0 - - - - - - - 181.44 23 25 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 2591 326 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9154.[MT7]-RPAADGAER.2b6_1.heavy 543.792 / 712.386 830.0 13.155799865722656 45 15 10 10 10 3.1616208745250938 31.62934582250346 0.0 3 0.9540454917057967 5.7348355222833405 830.0 0.0645833333333331 2.0 - - - - - - - 0.0 1 0 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) 2593 327 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9712.[MT7]-TPPEAIALC[CAM]SR.2y9_1.heavy 679.865 / 1016.52 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3B glycogen synthase kinase 3 beta 2595 327 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9712.[MT7]-TPPEAIALC[CAM]SR.2y10_1.heavy 679.865 / 1113.57 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3B glycogen synthase kinase 3 beta 2597 327 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9712.[MT7]-TPPEAIALC[CAM]SR.2y10_2.heavy 679.865 / 557.29 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3B glycogen synthase kinase 3 beta 2599 327 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9712.[MT7]-TPPEAIALC[CAM]SR.2y7_1.heavy 679.865 / 790.424 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3B glycogen synthase kinase 3 beta 2601 328 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9713.[MT7]-YFFYSSGEK[MT7].2y8_1.heavy 708.358 / 1108.54 5971.0 32.1049747467041 44 18 10 6 10 3.911568123541711 25.565194531101625 0.03749847412109375 3 0.9837781882064565 9.676623634034735 5971.0 8.412182320441989 0.0 - - - - - - - 253.4 11 10 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2603 328 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9713.[MT7]-YFFYSSGEK[MT7].2y5_1.heavy 708.358 / 651.343 9771.0 32.1049747467041 44 18 10 6 10 3.911568123541711 25.565194531101625 0.03749847412109375 3 0.9837781882064565 9.676623634034735 9771.0 10.077834311142958 0.0 - - - - - - - 724.0 19 7 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2605 328 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9713.[MT7]-YFFYSSGEK[MT7].2y6_1.heavy 708.358 / 814.406 11218.0 32.1049747467041 44 18 10 6 10 3.911568123541711 25.565194531101625 0.03749847412109375 3 0.9837781882064565 9.676623634034735 11218.0 19.3729125223839 0.0 - - - - - - - 284.42857142857144 22 7 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2607 328 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9713.[MT7]-YFFYSSGEK[MT7].2y7_1.heavy 708.358 / 961.475 5428.0 32.1049747467041 44 18 10 6 10 3.911568123541711 25.565194531101625 0.03749847412109375 3 0.9837781882064565 9.676623634034735 5428.0 7.697163904235728 0.0 - - - - - - - 263.27272727272725 10 11 GSK3A;GSK3B glycogen synthase kinase 3 alpha;glycogen synthase kinase 3 beta 2609 329 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10670.[MT7]-VNSC[CAM]K[MT7].2y4_1.heavy 448.249 / 652.32 7371.0 14.08062481880188 36 17 10 3 6 4.351948724257906 22.978211908287587 0.06289958953857422 5 0.9726429062320495 7.444444568452101 7371.0 40.88452247191011 1.0 - - - - - - - 218.0 14 20 BRCA2 breast cancer 2, early onset 2611 329 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10670.[MT7]-VNSC[CAM]K[MT7].2y2_1.heavy 448.249 / 451.246 1453.0 14.08062481880188 36 17 10 3 6 4.351948724257906 22.978211908287587 0.06289958953857422 5 0.9726429062320495 7.444444568452101 1453.0 12.57403846153846 5.0 - - - - - - - 159.84615384615384 5 13 BRCA2 breast cancer 2, early onset 2613 329 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10670.[MT7]-VNSC[CAM]K[MT7].2b4_1.heavy 448.249 / 605.283 623.0 14.08062481880188 36 17 10 3 6 4.351948724257906 22.978211908287587 0.06289958953857422 5 0.9726429062320495 7.444444568452101 623.0 0.24007707129094408 28.0 - - - - - - - 265.22222222222223 9 18 BRCA2 breast cancer 2, early onset 2615 329 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10670.[MT7]-VNSC[CAM]K[MT7].2y3_1.heavy 448.249 / 538.278 2076.0 14.08062481880188 36 17 10 3 6 4.351948724257906 22.978211908287587 0.06289958953857422 5 0.9726429062320495 7.444444568452101 2076.0 11.231067758955845 0.0 - - - - - - - 727.0 4 7 BRCA2 breast cancer 2, early onset 2617 330 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9718.[MT7]-LC[CAM]DSGELVAIK[MT7]K[MT7].3b6_1.heavy 589.013 / 806.347 9528.0 27.1564998626709 46 16 10 10 10 2.53765389820782 32.77577297588211 0.0 3 0.9686264581235069 6.9492599916990505 9528.0 4.873271957112211 1.0 - - - - - - - 397.25 22 4 GSK3B glycogen synthase kinase 3 beta 2619 330 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9718.[MT7]-LC[CAM]DSGELVAIK[MT7]K[MT7].3y4_1.heavy 589.013 / 747.533 12023.0 27.1564998626709 46 16 10 10 10 2.53765389820782 32.77577297588211 0.0 3 0.9686264581235069 6.9492599916990505 12023.0 18.090754936353612 0.0 - - - - - - - 272.4 24 10 GSK3B glycogen synthase kinase 3 beta 2621 330 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9718.[MT7]-LC[CAM]DSGELVAIK[MT7]K[MT7].3b7_1.heavy 589.013 / 919.431 7713.0 27.1564998626709 46 16 10 10 10 2.53765389820782 32.77577297588211 0.0 3 0.9686264581235069 6.9492599916990505 7713.0 8.670749448934608 0.0 - - - - - - - 340.5 15 8 GSK3B glycogen synthase kinase 3 beta 2623 330 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9718.[MT7]-LC[CAM]DSGELVAIK[MT7]K[MT7].3y2_1.heavy 589.013 / 563.412 5898.0 27.1564998626709 46 16 10 10 10 2.53765389820782 32.77577297588211 0.0 3 0.9686264581235069 6.9492599916990505 5898.0 4.480952380952381 1.0 - - - - - - - 363.2 11 5 GSK3B glycogen synthase kinase 3 beta 2625 331 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9719.[MT7]-LTPLEAC[CAM]AHSFFDELRDPNVK[MT7].4y4_1.heavy 687.607 / 601.379 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3B glycogen synthase kinase 3 beta 2627 331 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9719.[MT7]-LTPLEAC[CAM]AHSFFDELRDPNVK[MT7].4y12_2.heavy 687.607 / 805.918 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3B glycogen synthase kinase 3 beta 2629 331 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9719.[MT7]-LTPLEAC[CAM]AHSFFDELRDPNVK[MT7].4y11_2.heavy 687.607 / 762.402 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3B glycogen synthase kinase 3 beta 2631 331 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9719.[MT7]-LTPLEAC[CAM]AHSFFDELRDPNVK[MT7].4b5_1.heavy 687.607 / 698.42 N/A N/A - - - - - - - - - 0.0 - - - - - - - GSK3B glycogen synthase kinase 3 beta 2633 332 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9716.[MT7]-LC[CAM]DSGELVAIK[MT7].2b3_1.heavy 746.918 / 533.251 7489.0 30.24340057373047 42 12 10 10 10 0.9829839615973819 61.227210141693206 0.0 3 0.8850475441383259 3.604561269170151 7489.0 12.601682692307692 0.0 - - - - - - - 702.0 14 8 GSK3B glycogen synthase kinase 3 beta 2635 332 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9716.[MT7]-LC[CAM]DSGELVAIK[MT7].2b6_1.heavy 746.918 / 806.347 3744.0 30.24340057373047 42 12 10 10 10 0.9829839615973819 61.227210141693206 0.0 3 0.8850475441383259 3.604561269170151 3744.0 5.7291428571428575 0.0 - - - - - - - 294.6666666666667 7 12 GSK3B glycogen synthase kinase 3 beta 2637 332 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9716.[MT7]-LC[CAM]DSGELVAIK[MT7].2y10_1.heavy 746.918 / 1235.64 832.0 30.24340057373047 42 12 10 10 10 0.9829839615973819 61.227210141693206 0.0 3 0.8850475441383259 3.604561269170151 832.0 -0.2933333333333333 12.0 - - - - - - - 249.6 2 10 GSK3B glycogen synthase kinase 3 beta 2639 332 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9716.[MT7]-LC[CAM]DSGELVAIK[MT7].2b7_1.heavy 746.918 / 919.431 4576.0 30.24340057373047 42 12 10 10 10 0.9829839615973819 61.227210141693206 0.0 3 0.8850475441383259 3.604561269170151 4576.0 29.259999999999998 0.0 - - - - - - - 277.3333333333333 9 12 GSK3B glycogen synthase kinase 3 beta 2641 333 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9159.[MT7]-SLAPMDAPR.2y8_1.heavy 551.296 / 870.45 11205.0 24.06197452545166 46 20 10 6 10 5.740493466557076 17.42010518478581 0.038898468017578125 3 0.9910472555812655 13.033460280017099 11205.0 41.47837252986431 0.0 - - - - - - - 387.8 22 5 KLHL9;KLHL13 kelch-like 9 (Drosophila);kelch-like 13 (Drosophila) 2643 333 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9159.[MT7]-SLAPMDAPR.2b6_1.heavy 551.296 / 759.383 12067.0 24.06197452545166 46 20 10 6 10 5.740493466557076 17.42010518478581 0.038898468017578125 3 0.9910472555812655 13.033460280017099 12067.0 27.35870283905478 0.0 - - - - - - - 251.0 24 6 KLHL9;KLHL13 kelch-like 9 (Drosophila);kelch-like 13 (Drosophila) 2645 333 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9159.[MT7]-SLAPMDAPR.2y6_1.heavy 551.296 / 686.329 25643.0 24.06197452545166 46 20 10 6 10 5.740493466557076 17.42010518478581 0.038898468017578125 3 0.9910472555812655 13.033460280017099 25643.0 85.67498839907192 0.0 - - - - - - - 369.2857142857143 51 7 KLHL9;KLHL13 kelch-like 9 (Drosophila);kelch-like 13 (Drosophila) 2647 333 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9159.[MT7]-SLAPMDAPR.2y7_1.heavy 551.296 / 757.366 9481.0 24.06197452545166 46 20 10 6 10 5.740493466557076 17.42010518478581 0.038898468017578125 3 0.9910472555812655 13.033460280017099 9481.0 24.198906527906846 0.0 - - - - - - - 301.4 18 10 KLHL9;KLHL13 kelch-like 9 (Drosophila);kelch-like 13 (Drosophila) 2649 334 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9717.[MT7]-SLAYIHSFGIC[CAM]HR.4y5_1.heavy 426.974 / 642.314 2205.0 29.031099796295166 30 11 6 5 8 0.6753133962598687 78.16089790983678 0.04120063781738281 4 0.8610245031669909 3.2713745229876405 2205.0 9.013636363636364 0.0 - - - - - - - 308.4 4 5 GSK3B glycogen synthase kinase 3 beta 2651 334 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9717.[MT7]-SLAYIHSFGIC[CAM]HR.4b5_1.heavy 426.974 / 692.41 1102.0 29.031099796295166 30 11 6 5 8 0.6753133962598687 78.16089790983678 0.04120063781738281 4 0.8610245031669909 3.2713745229876405 1102.0 4.608727272727272 2.0 - - - - - - - 256.8333333333333 2 6 GSK3B glycogen synthase kinase 3 beta 2653 334 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9717.[MT7]-SLAYIHSFGIC[CAM]HR.4y3_1.heavy 426.974 / 472.208 3528.0 29.031099796295166 30 11 6 5 8 0.6753133962598687 78.16089790983678 0.04120063781738281 4 0.8610245031669909 3.2713745229876405 3528.0 16.029090909090908 2.0 - - - - - - - 308.4 11 10 GSK3B glycogen synthase kinase 3 beta 2655 334 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9717.[MT7]-SLAYIHSFGIC[CAM]HR.4b4_1.heavy 426.974 / 579.326 1323.0 29.031099796295166 30 11 6 5 8 0.6753133962598687 78.16089790983678 0.04120063781738281 4 0.8610245031669909 3.2713745229876405 1323.0 3.002727272727272 0.0 - - - - - - - 256.8333333333333 2 6 GSK3B glycogen synthase kinase 3 beta 2657 335 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9610.[MT7]-FIAFC[CAM]GPHSR.3y6_1.heavy 445.896 / 713.315 12548.0 28.739649772644043 45 20 10 5 10 8.021882795319806 12.46590140388773 0.04310035705566406 3 0.9930351954940292 14.779356231884151 12548.0 81.562 0.0 - - - - - - - 264.0 25 10 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2659 335 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9610.[MT7]-FIAFC[CAM]GPHSR.3y4_1.heavy 445.896 / 496.263 12768.0 28.739649772644043 45 20 10 5 10 8.021882795319806 12.46590140388773 0.04310035705566406 3 0.9930351954940292 14.779356231884151 12768.0 47.10618181818182 0.0 - - - - - - - 302.5 25 8 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2661 335 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9610.[MT7]-FIAFC[CAM]GPHSR.3b3_1.heavy 445.896 / 476.299 27517.0 28.739649772644043 45 20 10 5 10 8.021882795319806 12.46590140388773 0.04310035705566406 3 0.9930351954940292 14.779356231884151 27517.0 64.26881516802906 0.0 - - - - - - - 275.0 55 8 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2663 335 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9610.[MT7]-FIAFC[CAM]GPHSR.3y5_1.heavy 445.896 / 553.284 22454.0 28.739649772644043 45 20 10 5 10 8.021882795319806 12.46590140388773 0.04310035705566406 3 0.9930351954940292 14.779356231884151 22454.0 64.27344546486431 0.0 - - - - - - - 377.14285714285717 44 7 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2665 336 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9022.[MT7]-ALLQIR.2b3_1.heavy 429.288 / 442.315 20084.0 29.30780029296875 46 16 10 10 10 3.505083160155427 22.839911591129564 0.0 3 0.9663327303000988 6.707062762228289 20084.0 51.533010664988 0.0 - - - - - - - 320.5 40 4 RNF157;MGRN1 ring finger protein 157;mahogunin, ring finger 1 2667 336 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9022.[MT7]-ALLQIR.2y4_1.heavy 429.288 / 529.346 28203.0 29.30780029296875 46 16 10 10 10 3.505083160155427 22.839911591129564 0.0 3 0.9663327303000988 6.707062762228289 28203.0 103.44476304953837 0.0 - - - - - - - 293.875 56 8 RNF157;MGRN1 ring finger protein 157;mahogunin, ring finger 1 2669 336 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9022.[MT7]-ALLQIR.2y5_1.heavy 429.288 / 642.43 69225.0 29.30780029296875 46 16 10 10 10 3.505083160155427 22.839911591129564 0.0 3 0.9663327303000988 6.707062762228289 69225.0 87.25618913749129 0.0 - - - - - - - 320.5 138 2 RNF157;MGRN1 ring finger protein 157;mahogunin, ring finger 1 2671 336 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9022.[MT7]-ALLQIR.2b4_1.heavy 429.288 / 570.373 32262.0 29.30780029296875 46 16 10 10 10 3.505083160155427 22.839911591129564 0.0 3 0.9663327303000988 6.707062762228289 32262.0 185.00072316911368 0.0 - - - - - - - 332.3333333333333 64 9 RNF157;MGRN1 ring finger protein 157;mahogunin, ring finger 1 2673 337 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9604.[MT7]-SLSISR.2b3_1.heavy 403.746 / 432.258 3431.0 21.477800369262695 35 15 10 6 4 4.732477512252648 21.130581126079193 0.0355987548828125 7 0.9541037718592318 5.73850383276074 3431.0 8.397552447552448 2.0 - - - - - - - 639.8571428571429 19 14 ZNF518B;CDC14B zinc finger protein 518B;CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2675 337 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9604.[MT7]-SLSISR.2y4_1.heavy 403.746 / 462.267 7053.0 21.477800369262695 35 15 10 6 4 4.732477512252648 21.130581126079193 0.0355987548828125 7 0.9541037718592318 5.73850383276074 7053.0 6.554763890186054 0.0 - - - - - - - 254.33333333333334 14 9 ZNF518B;CDC14B zinc finger protein 518B;CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2677 337 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9604.[MT7]-SLSISR.2y5_1.heavy 403.746 / 575.351 13724.0 21.477800369262695 35 15 10 6 4 4.732477512252648 21.130581126079193 0.0355987548828125 7 0.9541037718592318 5.73850383276074 13724.0 57.73277949085036 0.0 - - - - - - - 309.75 27 8 ZNF518B;CDC14B zinc finger protein 518B;CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2679 337 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9604.[MT7]-SLSISR.2b5_1.heavy 403.746 / 632.374 4003.0 21.477800369262695 35 15 10 6 4 4.732477512252648 21.130581126079193 0.0355987548828125 7 0.9541037718592318 5.73850383276074 4003.0 7.562960453657879 5.0 - - - - - - - 720.0 27 9 ZNF518B;CDC14B zinc finger protein 518B;CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2681 338 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9026.[MT7]-VLQNSR.2b3_1.heavy 430.757 / 485.32 3135.0 17.42527484893799 39 18 10 5 6 13.82743685621089 7.231998311753841 0.046100616455078125 5 0.9854975427743582 10.235647254675055 3135.0 1.0892857142857144 3.0 - - - - - - - 247.5 6 8 AKT1 v-akt murine thymoma viral oncogene homolog 1 2683 338 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9026.[MT7]-VLQNSR.2y4_1.heavy 430.757 / 504.253 11551.0 17.42527484893799 39 18 10 5 6 13.82743685621089 7.231998311753841 0.046100616455078125 5 0.9854975427743582 10.235647254675055 11551.0 9.875854978354978 0.0 - - - - - - - 379.5 23 10 AKT1 v-akt murine thymoma viral oncogene homolog 1 2685 338 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9026.[MT7]-VLQNSR.2y5_1.heavy 430.757 / 617.336 40760.0 17.42527484893799 39 18 10 5 6 13.82743685621089 7.231998311753841 0.046100616455078125 5 0.9854975427743582 10.235647254675055 40760.0 59.718595478595475 0.0 - - - - - - - 458.3333333333333 81 9 AKT1 v-akt murine thymoma viral oncogene homolog 1 2687 338 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9026.[MT7]-VLQNSR.2b4_1.heavy 430.757 / 599.363 4456.0 17.42527484893799 39 18 10 5 6 13.82743685621089 7.231998311753841 0.046100616455078125 5 0.9854975427743582 10.235647254675055 4456.0 14.673292929292927 2.0 - - - - - - - 300.0 63 11 AKT1 v-akt murine thymoma viral oncogene homolog 1 2689 339 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9028.[MT7]-ELALK[MT7].2b3_1.heavy 431.286 / 458.273 14842.0 25.175399780273438 36 8 10 10 8 0.9591866525511185 70.98138765391164 0.0 4 0.7921890366273882 2.658906454627696 14842.0 17.904499401439654 2.0 - - - - - - - 736.75 43 8 FLJ37396;NOL10;MAD1L1 hypothetical protein FLJ37396;nucleolar protein 10;MAD1 mitotic arrest deficient-like 1 (yeast) 2691 339 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9028.[MT7]-ELALK[MT7].2y4_1.heavy 431.286 / 588.42 461189.0 25.175399780273438 36 8 10 10 8 0.9591866525511185 70.98138765391164 0.0 4 0.7921890366273882 2.658906454627696 461189.0 382.3542041219626 0.0 - - - - - - - 1184.857142857143 922 7 FLJ37396;NOL10;MAD1L1 hypothetical protein FLJ37396;nucleolar protein 10;MAD1 mitotic arrest deficient-like 1 (yeast) 2693 339 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9028.[MT7]-ELALK[MT7].2b4_1.heavy 431.286 / 571.357 10913.0 25.175399780273438 36 8 10 10 8 0.9591866525511185 70.98138765391164 0.0 4 0.7921890366273882 2.658906454627696 10913.0 12.833819527101303 1.0 - - - - - - - 703.4444444444445 21 9 FLJ37396;NOL10;MAD1L1 hypothetical protein FLJ37396;nucleolar protein 10;MAD1 mitotic arrest deficient-like 1 (yeast) 2695 339 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9028.[MT7]-ELALK[MT7].2y3_1.heavy 431.286 / 475.336 97345.0 25.175399780273438 36 8 10 10 8 0.9591866525511185 70.98138765391164 0.0 4 0.7921890366273882 2.658906454627696 97345.0 181.91549625314278 0.0 - - - - - - - 810.7142857142857 194 7 FLJ37396;NOL10;MAD1L1 hypothetical protein FLJ37396;nucleolar protein 10;MAD1 mitotic arrest deficient-like 1 (yeast) 2697 340 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9608.[MT7]-NHNVTTIIR.3y6_1.heavy 404.571 / 702.451 3255.0 21.699549674987793 46 20 10 6 10 7.974152385874904 12.540517808154258 0.03610038757324219 3 0.992045796519806 13.828520838377832 3255.0 21.62762019329351 0.0 - - - - - - - 306.2 6 5 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2699 340 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9608.[MT7]-NHNVTTIIR.3b3_1.heavy 404.571 / 510.254 14168.0 21.699549674987793 46 20 10 6 10 7.974152385874904 12.540517808154258 0.03610038757324219 3 0.992045796519806 13.828520838377832 14168.0 47.65302361873894 0.0 - - - - - - - 741.625 28 8 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2701 340 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9608.[MT7]-NHNVTTIIR.3y4_1.heavy 404.571 / 502.335 30059.0 21.699549674987793 46 20 10 6 10 7.974152385874904 12.540517808154258 0.03610038757324219 3 0.992045796519806 13.828520838377832 30059.0 79.69341224937104 0.0 - - - - - - - 306.2 60 10 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2703 340 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9608.[MT7]-NHNVTTIIR.3y5_1.heavy 404.571 / 603.382 28336.0 21.699549674987793 46 20 10 6 10 7.974152385874904 12.540517808154258 0.03610038757324219 3 0.992045796519806 13.828520838377832 28336.0 84.71206266318538 0.0 - - - - - - - 255.0 56 9 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2705 341 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9609.[MT7]-IVHFTGSDQR.3y7_1.heavy 435.234 / 810.374 601.0 22.76657485961914 42 20 10 6 6 18.258029153305223 5.477042410237205 0.0364990234375 5 0.9938818038033378 15.769902063321803 601.0 2.8034999999999997 1.0 - - - - - - - 0.0 1 0 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2707 341 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9609.[MT7]-IVHFTGSDQR.3y6_1.heavy 435.234 / 663.306 7217.0 22.76657485961914 42 20 10 6 6 18.258029153305223 5.477042410237205 0.0364990234375 5 0.9938818038033378 15.769902063321803 7217.0 66.03555 0.0 - - - - - - - 200.0 14 5 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2709 341 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9609.[MT7]-IVHFTGSDQR.3y5_1.heavy 435.234 / 562.258 5814.0 22.76657485961914 42 20 10 6 6 18.258029153305223 5.477042410237205 0.0364990234375 5 0.9938818038033378 15.769902063321803 5814.0 6.7693013721934765 1.0 - - - - - - - 626.125 13 8 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2711 341 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9609.[MT7]-IVHFTGSDQR.3b3_1.heavy 435.234 / 494.321 5413.0 22.76657485961914 42 20 10 6 6 18.258029153305223 5.477042410237205 0.0364990234375 5 0.9938818038033378 15.769902063321803 5413.0 5.401425516749821 2.0 - - - - - - - 300.5 14 10 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae) 2713 342 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9123.[MT7]-NVHEVK[MT7].2y4_1.heavy 507.303 / 656.385 9644.0 14.965200424194336 45 15 10 10 10 14.841627042393757 6.737805748275381 0.0 3 0.9596193578375833 6.120732420518868 9644.0 46.25270099800399 0.0 - - - - - - - 211.6153846153846 19 13 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 2715 342 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9123.[MT7]-NVHEVK[MT7].2y5_1.heavy 507.303 / 755.453 2630.0 14.965200424194336 45 15 10 10 10 14.841627042393757 6.737805748275381 0.0 3 0.9596193578375833 6.120732420518868 2630.0 26.6156 2.0 - - - - - - - 195.375 7 16 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 2717 342 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9123.[MT7]-NVHEVK[MT7].2b4_1.heavy 507.303 / 624.322 4634.0 14.965200424194336 45 15 10 10 10 14.841627042393757 6.737805748275381 0.0 3 0.9596193578375833 6.120732420518868 4634.0 49.30576 0.0 - - - - - - - 227.45454545454547 9 11 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 2719 342 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9123.[MT7]-NVHEVK[MT7].2y3_1.heavy 507.303 / 519.326 6137.0 14.965200424194336 45 15 10 10 10 14.841627042393757 6.737805748275381 0.0 3 0.9596193578375833 6.120732420518868 6137.0 38.17214 0.0 - - - - - - - 202.0 12 13 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 2721 343 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9020.[MT7]-EQFER.2b3_1.heavy 426.72 / 549.279 679.0 21.398274898529053 33 16 10 3 4 24.754649665275526 4.0396451314063455 0.07029914855957031 7 0.9642174349090105 6.504636627497204 679.0 4.049831272391078 30.0 - - - - - - - 237.6 28 10 ALDH1B1;KRT20;UBE4A aldehyde dehydrogenase 1 family, member B1;keratin 20;ubiquitination factor E4A (UFD2 homolog, yeast) 2723 343 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9020.[MT7]-EQFER.2y4_1.heavy 426.72 / 579.289 47868.0 21.398274898529053 33 16 10 3 4 24.754649665275526 4.0396451314063455 0.07029914855957031 7 0.9642174349090105 6.504636627497204 47868.0 59.43010707674354 1.0 - - - - - - - 203.8 95 5 ALDH1B1;KRT20;UBE4A aldehyde dehydrogenase 1 family, member B1;keratin 20;ubiquitination factor E4A (UFD2 homolog, yeast) 2725 343 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9020.[MT7]-EQFER.2b4_1.heavy 426.72 / 678.321 19691.0 21.398274898529053 33 16 10 3 4 24.754649665275526 4.0396451314063455 0.07029914855957031 7 0.9642174349090105 6.504636627497204 19691.0 9.547044055117674 4.0 - - - - - - - 233.375 82 8 ALDH1B1;KRT20;UBE4A aldehyde dehydrogenase 1 family, member B1;keratin 20;ubiquitination factor E4A (UFD2 homolog, yeast) 2727 343 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9020.[MT7]-EQFER.2y1_1.heavy 426.72 / 175.119 83685.0 21.398274898529053 33 16 10 3 4 24.754649665275526 4.0396451314063455 0.07029914855957031 7 0.9642174349090105 6.504636627497204 83685.0 13.190280210157617 2.0 - - - - - - - 339.0 185 1 ALDH1B1;KRT20;UBE4A aldehyde dehydrogenase 1 family, member B1;keratin 20;ubiquitination factor E4A (UFD2 homolog, yeast) 2729 344 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9021.[MT7]-RNIEFALK[MT7].3y3_1.heavy 426.931 / 475.336 35798.0 27.1564998626709 44 14 10 10 10 1.8752145747582687 42.36258207844635 0.0 3 0.9361115841876733 4.8563674726847434 35798.0 73.75502826565084 1.0 - - - - - - - 323.85714285714283 71 7 HERC2 hect domain and RLD 2 2731 344 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9021.[MT7]-RNIEFALK[MT7].3b4_1.heavy 426.931 / 657.38 16766.0 27.1564998626709 44 14 10 10 10 1.8752145747582687 42.36258207844635 0.0 3 0.9361115841876733 4.8563674726847434 16766.0 96.0656533535607 0.0 - - - - - - - 302.3333333333333 33 6 HERC2 hect domain and RLD 2 2733 344 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9021.[MT7]-RNIEFALK[MT7].3y4_1.heavy 426.931 / 622.404 14274.0 27.1564998626709 44 14 10 10 10 1.8752145747582687 42.36258207844635 0.0 3 0.9361115841876733 4.8563674726847434 14274.0 31.104196949557448 1.0 - - - - - - - 377.6666666666667 37 6 HERC2 hect domain and RLD 2 2735 344 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9021.[MT7]-RNIEFALK[MT7].3y1_1.heavy 426.931 / 291.215 N/A 27.1564998626709 44 14 10 10 10 1.8752145747582687 42.36258207844635 0.0 3 0.9361115841876733 4.8563674726847434 60268.0 6.56304847148172 0.0 - - - - - - - 2945.0 120 1 HERC2 hect domain and RLD 2 2737 345 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10659.[MT7]-VSAIVEQSWR.2b4_1.heavy 659.865 / 515.331 3453.0 31.26889991760254 34 10 6 10 8 0.8765681652778504 69.71013376373206 0.0 4 0.8403375849216682 3.046531343299907 3453.0 8.285196173550347 3.0 - - - - - - - 714.6363636363636 7 11 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2739 345 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10659.[MT7]-VSAIVEQSWR.2y9_1.heavy 659.865 / 1075.55 5371.0 31.26889991760254 34 10 6 10 8 0.8765681652778504 69.71013376373206 0.0 4 0.8403375849216682 3.046531343299907 5371.0 20.760325860507244 1.0 - - - - - - - 219.42857142857142 19 7 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2741 345 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10659.[MT7]-VSAIVEQSWR.2y6_1.heavy 659.865 / 804.4 6713.0 31.26889991760254 34 10 6 10 8 0.8765681652778504 69.71013376373206 0.0 4 0.8403375849216682 3.046531343299907 6713.0 13.24714902783289 0.0 - - - - - - - 617.6666666666666 13 9 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2743 345 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10659.[MT7]-VSAIVEQSWR.2y7_1.heavy 659.865 / 917.484 2110.0 31.26889991760254 34 10 6 10 8 0.8765681652778504 69.71013376373206 0.0 4 0.8403375849216682 3.046531343299907 2110.0 3.4016761118102616 17.0 - - - - - - - 767.0 9 10 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) 2745 346 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9038.[MT7]-LSVPC[CAM]R.2y4_1.heavy 438.248 / 531.271 4251.0 22.80375051498413 25 5 10 6 4 0.46776751219090323 105.48379768146283 0.03740119934082031 9 0.6947238652498522 2.1741596178809757 4251.0 3.009214853852535 3.0 - - - - - - - 665.0 8 7 PIAS4 protein inhibitor of activated STAT, 4 2747 346 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9038.[MT7]-LSVPC[CAM]R.2b3_1.heavy 438.248 / 444.294 15182.0 22.80375051498413 25 5 10 6 4 0.46776751219090323 105.48379768146283 0.03740119934082031 9 0.6947238652498522 2.1741596178809757 15182.0 11.261592931400472 0.0 - - - - - - - 1243.5714285714287 30 7 PIAS4 protein inhibitor of activated STAT, 4 2749 346 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9038.[MT7]-LSVPC[CAM]R.2y5_1.heavy 438.248 / 618.303 139678.0 22.80375051498413 25 5 10 6 4 0.46776751219090323 105.48379768146283 0.03740119934082031 9 0.6947238652498522 2.1741596178809757 139678.0 38.3396891716783 0.0 - - - - - - - 607.0 279 1 PIAS4 protein inhibitor of activated STAT, 4 2751 346 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9038.[MT7]-LSVPC[CAM]R.2y1_1.heavy 438.248 / 175.119 7085.0 22.80375051498413 25 5 10 6 4 0.46776751219090323 105.48379768146283 0.03740119934082031 9 0.6947238652498522 2.1741596178809757 7085.0 0.0 18.0 - - - - - - - 607.0 55 1 PIAS4 protein inhibitor of activated STAT, 4 2753 347 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 TNAA_ECO24.GLTFTYEPK.2y7.peptide 528.27 / 885.44 435476.0 29.22450065612793 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 435476.0 953.089433618744 0.0 - - - - - - - 1939.0 870 4 2755 347 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 TNAA_ECO24.GLTFTYEPK.2y6.peptide 528.27 / 784.39 556448.0 29.22450065612793 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 556448.0 1241.2246032177097 0.0 - - - - - - - 1293.0 1112 1 2757 347 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 TNAA_ECO24.GLTFTYEPK.2y5.peptide 528.27 / 637.32 961753.0 29.22450065612793 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 961753.0 2164.7496261665488 0.0 - - - - - - - 2586.0 1923 1 2759 348 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9139.[MT7]-TDPLWK[MT7].2y4_1.heavy 524.307 / 687.431 109793.0 28.02389971415202 45 20 10 5 10 3.1551871740430437 23.55779675290658 0.044399261474609375 3 0.9950293681018134 17.497520507147343 109793.0 65.37545805423665 0.0 - - - - - - - 223.0 219 2 FBXW11 F-box and WD repeat domain containing 11 2761 348 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9139.[MT7]-TDPLWK[MT7].2b4_1.heavy 524.307 / 571.321 15144.0 28.02389971415202 45 20 10 5 10 3.1551871740430437 23.55779675290658 0.044399261474609375 3 0.9950293681018134 17.497520507147343 15144.0 24.92990638032422 0.0 - - - - - - - 278.5 30 4 FBXW11 F-box and WD repeat domain containing 11 2763 348 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9139.[MT7]-TDPLWK[MT7].2y3_1.heavy 524.307 / 590.378 8908.0 28.02389971415202 45 20 10 5 10 3.1551871740430437 23.55779675290658 0.044399261474609375 3 0.9950293681018134 17.497520507147343 8908.0 17.9142005734585 0.0 - - - - - - - 381.57142857142856 17 7 FBXW11 F-box and WD repeat domain containing 11 2765 348 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9139.[MT7]-TDPLWK[MT7].2y1_1.heavy 524.307 / 291.215 N/A 28.02389971415202 45 20 10 5 10 3.1551871740430437 23.55779675290658 0.044399261474609375 3 0.9950293681018134 17.497520507147343 36078.0 12.077162778181341 0.0 - - - - - - - 1559.0 72 1 FBXW11 F-box and WD repeat domain containing 11 2767 349 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9031.[MT7]-FLAVDR.2b3_1.heavy 432.757 / 476.299 17220.0 27.69580078125 45 15 10 10 10 1.200706543790703 54.131047947644085 0.0 3 0.9507520229742167 5.538211203373996 17220.0 88.42825357781754 0.0 - - - - - - - 290.9 34 10 SMC1B structural maintenance of chromosomes 1B 2769 349 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9031.[MT7]-FLAVDR.2y4_1.heavy 432.757 / 460.251 20799.0 27.69580078125 45 15 10 10 10 1.200706543790703 54.131047947644085 0.0 3 0.9507520229742167 5.538211203373996 20799.0 44.480722801788374 0.0 - - - - - - - 335.5 41 6 SMC1B structural maintenance of chromosomes 1B 2771 349 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9031.[MT7]-FLAVDR.2y5_1.heavy 432.757 / 573.336 45846.0 27.69580078125 45 15 10 10 10 1.200706543790703 54.131047947644085 0.0 3 0.9507520229742167 5.538211203373996 45846.0 23.302185638020646 0.0 - - - - - - - 279.75 91 4 SMC1B structural maintenance of chromosomes 1B 2773 349 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9031.[MT7]-FLAVDR.2b5_1.heavy 432.757 / 690.394 25048.0 27.69580078125 45 15 10 10 10 1.200706543790703 54.131047947644085 0.0 3 0.9507520229742167 5.538211203373996 25048.0 34.17322178316755 0.0 - - - - - - - 447.0 50 6 SMC1B structural maintenance of chromosomes 1B 2775 350 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9133.[MT7]-VSAVSGDVR.2y8_1.heavy 517.292 / 790.405 26440.0 20.267900466918945 43 13 10 10 10 0.958250140080078 53.37671666180778 0.0 3 0.9092739072662462 4.065900598665101 26440.0 14.937089100945936 0.0 - - - - - - - 739.6363636363636 52 11 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2777 350 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9133.[MT7]-VSAVSGDVR.2b4_1.heavy 517.292 / 501.315 12758.0 20.267900466918945 43 13 10 10 10 0.958250140080078 53.37671666180778 0.0 3 0.9092739072662462 4.065900598665101 12758.0 12.36493989982116 1.0 - - - - - - - 716.625 25 8 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2779 350 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9133.[MT7]-VSAVSGDVR.2b7_1.heavy 517.292 / 760.396 33282.0 20.267900466918945 43 13 10 10 10 0.958250140080078 53.37671666180778 0.0 3 0.9092739072662462 4.065900598665101 33282.0 57.006534253999476 0.0 - - - - - - - 716.5 66 8 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2781 350 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9133.[MT7]-VSAVSGDVR.2y7_1.heavy 517.292 / 703.373 6656.0 20.267900466918945 43 13 10 10 10 0.958250140080078 53.37671666180778 0.0 3 0.9092739072662462 4.065900598665101 6656.0 3.480827858796589 2.0 - - - - - - - 766.0 19 7 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2783 351 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9030.[MT7]-DSINK[MT7].2b3_1.heavy 432.755 / 460.252 6516.0 16.20669937133789 37 15 4 10 8 3.049866884634552 32.78831627170588 0.0 4 0.9549823020710084 5.794658782564592 6516.0 15.729519226821758 1.0 - - - - - - - 266.4 13 10 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 2785 351 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9030.[MT7]-DSINK[MT7].2y4_1.heavy 432.755 / 605.374 26805.0 16.20669937133789 37 15 4 10 8 3.049866884634552 32.78831627170588 0.0 4 0.9549823020710084 5.794658782564592 26805.0 40.28224514332497 0.0 - - - - - - - 277.5 53 8 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 2787 351 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9030.[MT7]-DSINK[MT7].2b4_1.heavy 432.755 / 574.295 3998.0 16.20669937133789 37 15 4 10 8 3.049866884634552 32.78831627170588 0.0 4 0.9549823020710084 5.794658782564592 3998.0 1.9195063789580074 7.0 - - - - - - - 407.0 92 4 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 2789 351 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9030.[MT7]-DSINK[MT7].2y3_1.heavy 432.755 / 518.342 6812.0 16.20669937133789 37 15 4 10 8 3.049866884634552 32.78831627170588 0.0 4 0.9549823020710084 5.794658782564592 6812.0 54.92558558558558 0.0 - - - - - - - 255.63636363636363 13 11 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 2791 352 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9103.[MT7]-LPEHC[CAM]IEYVR.3y6_1.heavy 487.254 / 839.408 22019.0 25.41950035095215 44 14 10 10 10 1.683674274768582 39.62077478078132 0.0 3 0.949788310091084 5.484357608517153 22019.0 124.26487796642218 0.0 - - - - - - - 222.0 44 5 UBA3 ubiquitin-like modifier activating enzyme 3 2793 352 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9103.[MT7]-LPEHC[CAM]IEYVR.3b4_1.heavy 487.254 / 621.348 11565.0 25.41950035095215 44 14 10 10 10 1.683674274768582 39.62077478078132 0.0 3 0.949788310091084 5.484357608517153 11565.0 53.12770156328335 0.0 - - - - - - - 277.75 23 8 UBA3 ubiquitin-like modifier activating enzyme 3 2795 352 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9103.[MT7]-LPEHC[CAM]IEYVR.3y4_1.heavy 487.254 / 566.293 37810.0 25.41950035095215 44 14 10 10 10 1.683674274768582 39.62077478078132 0.0 3 0.949788310091084 5.484357608517153 37810.0 39.39223524243873 0.0 - - - - - - - 305.625 75 8 UBA3 ubiquitin-like modifier activating enzyme 3 2797 352 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9103.[MT7]-LPEHC[CAM]IEYVR.3y5_1.heavy 487.254 / 679.377 28914.0 25.41950035095215 44 14 10 10 10 1.683674274768582 39.62077478078132 0.0 3 0.949788310091084 5.484357608517153 28914.0 58.30314424290745 0.0 - - - - - - - 445.0 57 1 UBA3 ubiquitin-like modifier activating enzyme 3 2799 353 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10720.[MT7]-EELEVAGER.2y8_1.heavy 588.305 / 902.458 64928.0 25.03670024871826 35 11 10 6 8 1.87822179712511 53.24184830197608 0.03899955749511719 4 0.8661578425838682 3.3350208373793833 64928.0 198.6253391053391 0.0 - - - - - - - 339.42857142857144 129 7 ELK1 ELK1, member of ETS oncogene family 2801 353 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10720.[MT7]-EELEVAGER.2y5_1.heavy 588.305 / 531.289 10096.0 25.03670024871826 35 11 10 6 8 1.87822179712511 53.24184830197608 0.03899955749511719 4 0.8661578425838682 3.3350208373793833 10096.0 11.654834054834055 1.0 - - - - - - - 792.0 20 9 ELK1 ELK1, member of ETS oncogene family 2803 353 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10720.[MT7]-EELEVAGER.2b4_1.heavy 588.305 / 645.321 10293.0 25.03670024871826 35 11 10 6 8 1.87822179712511 53.24184830197608 0.03899955749511719 4 0.8661578425838682 3.3350208373793833 10293.0 22.87333333333333 1.0 - - - - - - - 247.5 20 12 ELK1 ELK1, member of ETS oncogene family 2805 353 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10720.[MT7]-EELEVAGER.2y7_1.heavy 588.305 / 773.415 9502.0 25.03670024871826 35 11 10 6 8 1.87822179712511 53.24184830197608 0.03899955749511719 4 0.8661578425838682 3.3350208373793833 9502.0 21.595454545454547 0.0 - - - - - - - 306.0 19 11 ELK1 ELK1, member of ETS oncogene family 2807 354 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10721.[MT7]-SEELNVEPGLGR.2y8_1.heavy 722.382 / 841.453 22800.0 26.446199417114258 50 20 10 10 10 9.467619575904727 10.562317084909274 0.0 3 0.9973693910951525 24.05686194646457 22800.0 119.07106106488695 0.0 - - - - - - - 293.5 45 10 ELK1 ELK1, member of ETS oncogene family 2809 354 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10721.[MT7]-SEELNVEPGLGR.2b4_1.heavy 722.382 / 603.311 18511.0 26.446199417114258 50 20 10 10 10 9.467619575904727 10.562317084909274 0.0 3 0.9973693910951525 24.05686194646457 18511.0 28.69922480620155 0.0 - - - - - - - 338.5 37 6 ELK1 ELK1, member of ETS oncogene family 2811 354 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10721.[MT7]-SEELNVEPGLGR.2y9_1.heavy 722.382 / 954.537 20768.0 26.446199417114258 50 20 10 10 10 9.467619575904727 10.562317084909274 0.0 3 0.9973693910951525 24.05686194646457 20768.0 37.48493554111039 0.0 - - - - - - - 301.0 41 3 ELK1 ELK1, member of ETS oncogene family 2813 354 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10721.[MT7]-SEELNVEPGLGR.2b5_1.heavy 722.382 / 717.354 24155.0 26.446199417114258 50 20 10 10 10 9.467619575904727 10.562317084909274 0.0 3 0.9973693910951525 24.05686194646457 24155.0 7.832124222634054 1.0 - - - - - - - 361.0 50 5 ELK1 ELK1, member of ETS oncogene family 2815 355 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10723.[MT7]-VEGPK[MT7]EELEVAGER.3b9_2.heavy 610.666 / 650.355 15036.0 25.439949989318848 37 12 10 5 10 1.5138786736510974 55.42813339313852 0.04089927673339844 3 0.8935068248596826 3.7477432443268186 15036.0 14.846408132376101 0.0 - - - - - - - 331.5 30 6 ELK1 ELK1, member of ETS oncogene family 2817 355 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10723.[MT7]-VEGPK[MT7]EELEVAGER.3y7_1.heavy 610.666 / 773.415 7297.0 25.439949989318848 37 12 10 5 10 1.5138786736510974 55.42813339313852 0.04089927673339844 3 0.8935068248596826 3.7477432443268186 7297.0 8.144331832313176 1.0 - - - - - - - 347.2857142857143 14 7 ELK1 ELK1, member of ETS oncogene family 2819 355 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10723.[MT7]-VEGPK[MT7]EELEVAGER.3y12_2.heavy 610.666 / 729.39 26976.0 25.439949989318848 37 12 10 5 10 1.5138786736510974 55.42813339313852 0.04089927673339844 3 0.8935068248596826 3.7477432443268186 26976.0 13.055251781607636 0.0 - - - - - - - 410.42857142857144 53 7 ELK1 ELK1, member of ETS oncogene family 2821 355 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10723.[MT7]-VEGPK[MT7]EELEVAGER.3y5_1.heavy 610.666 / 531.289 8624.0 25.439949989318848 37 12 10 5 10 1.5138786736510974 55.42813339313852 0.04089927673339844 3 0.8935068248596826 3.7477432443268186 8624.0 5.459089675052066 1.0 - - - - - - - 368.3333333333333 17 6 ELK1 ELK1, member of ETS oncogene family 2823 356 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10728.[MT7]-QNSAPAR.2y5_1.heavy 444.244 / 501.278 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2825 356 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10728.[MT7]-QNSAPAR.2b4_1.heavy 444.244 / 545.28 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2827 356 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10728.[MT7]-QNSAPAR.2b6_1.heavy 444.244 / 713.37 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2829 356 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10728.[MT7]-QNSAPAR.2y6_1.heavy 444.244 / 615.321 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2831 357 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9110.[MT7]-EISLLK[MT7].2y4_1.heavy 495.826 / 604.415 107859.0 29.638099670410156 45 17 10 10 8 3.4918140001524307 22.045489951740983 0.0 4 0.9749507996863025 7.781345231138435 107859.0 142.79205673758867 0.0 - - - - - - - 317.0 215 6 CDK2;CDK3;CDK1 cyclin-dependent kinase 2;cyclin-dependent kinase 3;cyclin-dependent kinase 1 2833 357 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9110.[MT7]-EISLLK[MT7].2y5_1.heavy 495.826 / 717.499 116318.0 29.638099670410156 45 17 10 10 8 3.4918140001524307 22.045489951740983 0.0 4 0.9749507996863025 7.781345231138435 116318.0 320.2177235645099 0.0 - - - - - - - 317.0 232 8 CDK2;CDK3;CDK1 cyclin-dependent kinase 2;cyclin-dependent kinase 3;cyclin-dependent kinase 1 2835 357 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9110.[MT7]-EISLLK[MT7].2b4_1.heavy 495.826 / 587.352 22629.0 29.638099670410156 45 17 10 10 8 3.4918140001524307 22.045489951740983 0.0 4 0.9749507996863025 7.781345231138435 22629.0 19.975570626269533 2.0 - - - - - - - 281.6666666666667 98 3 CDK2;CDK3;CDK1 cyclin-dependent kinase 2;cyclin-dependent kinase 3;cyclin-dependent kinase 1 2837 357 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9110.[MT7]-EISLLK[MT7].2y3_1.heavy 495.826 / 517.383 36799.0 29.638099670410156 45 17 10 10 8 3.4918140001524307 22.045489951740983 0.0 4 0.9749507996863025 7.781345231138435 36799.0 46.441181681944684 1.0 - - - - - - - 343.5 94 8 CDK2;CDK3;CDK1 cyclin-dependent kinase 2;cyclin-dependent kinase 3;cyclin-dependent kinase 1 2839 358 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9113.[MT7]-SSIC[CAM]LLR.2y4_1.heavy 496.788 / 561.318 13454.0 28.54330062866211 48 18 10 10 10 5.234017287360601 19.105783284569124 0.0 3 0.9867214983456002 10.698086240776291 13454.0 21.021063298008336 0.0 - - - - - - - 252.42857142857142 26 7 CDC16 cell division cycle 16 homolog (S. cerevisiae) 2841 358 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9113.[MT7]-SSIC[CAM]LLR.2b4_1.heavy 496.788 / 592.288 19850.0 28.54330062866211 48 18 10 10 10 5.234017287360601 19.105783284569124 0.0 3 0.9867214983456002 10.698086240776291 19850.0 46.49018469422008 0.0 - - - - - - - 759.7777777777778 39 9 CDC16 cell division cycle 16 homolog (S. cerevisiae) 2843 358 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9113.[MT7]-SSIC[CAM]LLR.2y6_1.heavy 496.788 / 761.434 23600.0 28.54330062866211 48 18 10 10 10 5.234017287360601 19.105783284569124 0.0 3 0.9867214983456002 10.698086240776291 23600.0 9.311335012594459 1.0 - - - - - - - 315.2857142857143 47 7 CDC16 cell division cycle 16 homolog (S. cerevisiae) 2845 358 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9113.[MT7]-SSIC[CAM]LLR.2b5_1.heavy 496.788 / 705.372 13234.0 28.54330062866211 48 18 10 10 10 5.234017287360601 19.105783284569124 0.0 3 0.9867214983456002 10.698086240776291 13234.0 18.82237312528697 1.0 - - - - - - - 717.0 31 8 CDC16 cell division cycle 16 homolog (S. cerevisiae) 2847 359 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9117.[MT7]-TLGPEAK[MT7].2y4_1.heavy 502.305 / 588.347 38422.0 19.377099990844727 48 20 10 10 8 9.348644547773407 10.69673785210042 0.0 4 0.9955857695169368 18.568421297248207 38422.0 76.21827422157259 1.0 - - - - - - - 224.75 93 4 AKT1 v-akt murine thymoma viral oncogene homolog 1 2849 359 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9117.[MT7]-TLGPEAK[MT7].2y5_1.heavy 502.305 / 645.369 61763.0 19.377099990844727 48 20 10 10 8 9.348644547773407 10.69673785210042 0.0 4 0.9955857695169368 18.568421297248207 61763.0 192.07761425024265 0.0 - - - - - - - 239.66666666666666 123 3 AKT1 v-akt murine thymoma viral oncogene homolog 1 2851 359 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9117.[MT7]-TLGPEAK[MT7].2y6_1.heavy 502.305 / 758.453 37884.0 19.377099990844727 48 20 10 10 8 9.348644547773407 10.69673785210042 0.0 4 0.9955857695169368 18.568421297248207 37884.0 254.79950603528317 0.0 - - - - - - - 215.8 75 5 AKT1 v-akt murine thymoma viral oncogene homolog 1 2853 359 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9117.[MT7]-TLGPEAK[MT7].2b5_1.heavy 502.305 / 642.358 9695.0 19.377099990844727 48 20 10 10 8 9.348644547773407 10.69673785210042 0.0 4 0.9955857695169368 18.568421297248207 9695.0 22.036545961002787 0.0 - - - - - - - 269.5 19 4 AKT1 v-akt murine thymoma viral oncogene homolog 1 2855 360 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10732.[MT7]-TTNLDNR.2y6_1.heavy 489.26 / 732.364 6587.0 15.826899528503418 28 12 2 10 4 2.274827426799201 43.95937855413724 0.0 8 0.8867345769285543 3.6318391037163185 6587.0 22.066492789398467 1.0 - - - - - - - 214.625 101 8 CDC25A cell division cycle 25 homolog A (S. pombe) 2857 360 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10732.[MT7]-TTNLDNR.2b5_1.heavy 489.26 / 689.359 24488.0 15.826899528503418 28 12 2 10 4 2.274827426799201 43.95937855413724 0.0 8 0.8867345769285543 3.6318391037163185 24488.0 49.12706846868785 0.0 - - - - - - - 322.25 48 8 CDC25A cell division cycle 25 homolog A (S. pombe) 2859 360 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10732.[MT7]-TTNLDNR.2y5_1.heavy 489.26 / 631.316 1718.0 15.826899528503418 28 12 2 10 4 2.274827426799201 43.95937855413724 0.0 8 0.8867345769285543 3.6318391037163185 1718.0 6.118471621401853 8.0 - - - - - - - 265.85714285714283 81 14 CDC25A cell division cycle 25 homolog A (S. pombe) 2861 360 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10732.[MT7]-TTNLDNR.2b4_1.heavy 489.26 / 574.332 2291.0 15.826899528503418 28 12 2 10 4 2.274827426799201 43.95937855413724 0.0 8 0.8867345769285543 3.6318391037163185 2291.0 7.686042309645661 8.0 - - - - - - - 226.5 10 12 CDC25A cell division cycle 25 homolog A (S. pombe) 2863 361 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10733.[MT7]-TWAGEK[MT7].2b3_1.heavy 490.276 / 503.273 2588.0 19.775400161743164 20 7 4 5 4 1.6923992739970672 59.08771147355934 0.04180145263671875 9 0.7230359768100764 2.2886284831442656 2588.0 15.388108108108106 4.0 - - - - - - - 739.0 9 8 CDC25A cell division cycle 25 homolog A (S. pombe) 2865 361 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10733.[MT7]-TWAGEK[MT7].2y4_1.heavy 490.276 / 548.316 1294.0 19.775400161743164 20 7 4 5 4 1.6923992739970672 59.08771147355934 0.04180145263671875 9 0.7230359768100764 2.2886284831442656 1294.0 3.148040814833778 23.0 - - - - - - - 277.5 6 14 CDC25A cell division cycle 25 homolog A (S. pombe) 2867 361 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10733.[MT7]-TWAGEK[MT7].2y5_1.heavy 490.276 / 734.395 3512.0 19.775400161743164 20 7 4 5 4 1.6923992739970672 59.08771147355934 0.04180145263671875 9 0.7230359768100764 2.2886284831442656 3512.0 27.051891891891895 1.0 - - - - - - - 308.3333333333333 11 9 CDC25A cell division cycle 25 homolog A (S. pombe) 2869 361 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10733.[MT7]-TWAGEK[MT7].2b5_1.heavy 490.276 / 689.338 2033.0 19.775400161743164 20 7 4 5 4 1.6923992739970672 59.08771147355934 0.04180145263671875 9 0.7230359768100764 2.2886284831442656 2033.0 8.24189189189189 8.0 - - - - - - - 265.9375 13 16 CDC25A cell division cycle 25 homolog A (S. pombe) 2871 362 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10730.[MT7]-HQDLK[MT7].2b3_1.heavy 464.776 / 525.254 13548.0 14.3681001663208 44 14 10 10 10 1.4747074677399232 46.14246164089527 0.0 3 0.9432302016202595 5.154984952441065 13548.0 109.46774057425924 0.0 - - - - - - - 235.78571428571428 27 14 CDC25A;CDC25B;CDC25C cell division cycle 25 homolog A (S. pombe);cell division cycle 25 homolog B (S. pombe);cell division cycle 25 homolog C (S. pombe) 2873 362 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10730.[MT7]-HQDLK[MT7].2y4_1.heavy 464.776 / 647.385 14980.0 14.3681001663208 44 14 10 10 10 1.4747074677399232 46.14246164089527 0.0 3 0.9432302016202595 5.154984952441065 14980.0 15.858703743726437 0.0 - - - - - - - 275.2857142857143 29 14 CDC25A;CDC25B;CDC25C cell division cycle 25 homolog A (S. pombe);cell division cycle 25 homolog B (S. pombe);cell division cycle 25 homolog C (S. pombe) 2875 362 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10730.[MT7]-HQDLK[MT7].2b4_1.heavy 464.776 / 638.338 1652.0 14.3681001663208 44 14 10 10 10 1.4747074677399232 46.14246164089527 0.0 3 0.9432302016202595 5.154984952441065 1652.0 1.2946458869694526 5.0 - - - - - - - 261.5 12 16 CDC25A;CDC25B;CDC25C cell division cycle 25 homolog A (S. pombe);cell division cycle 25 homolog B (S. pombe);cell division cycle 25 homolog C (S. pombe) 2877 362 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10730.[MT7]-HQDLK[MT7].2y3_1.heavy 464.776 / 519.326 8041.0 14.3681001663208 44 14 10 10 10 1.4747074677399232 46.14246164089527 0.0 3 0.9432302016202595 5.154984952441065 8041.0 17.019828405391408 1.0 - - - - - - - 249.53333333333333 16 15 CDC25A;CDC25B;CDC25C cell division cycle 25 homolog A (S. pombe);cell division cycle 25 homolog B (S. pombe);cell division cycle 25 homolog C (S. pombe) 2879 363 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10736.[MT7]-ESTNPEK[MT7].2y4_1.heavy 546.792 / 631.353 2591.0 14.143500328063965 44 16 10 10 8 3.2583362171556103 30.69050992143953 0.0 4 0.963046294518197 6.400100885623016 2591.0 10.154632600754777 0.0 - - - - - - - 280.8181818181818 5 11 CDC25A cell division cycle 25 homolog A (S. pombe) 2881 363 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10736.[MT7]-ESTNPEK[MT7].2b4_1.heavy 546.792 / 576.275 6178.0 14.143500328063965 44 16 10 10 8 3.2583362171556103 30.69050992143953 0.0 4 0.963046294518197 6.400100885623016 6178.0 51.53154515050167 0.0 - - - - - - - 179.46666666666667 12 15 CDC25A cell division cycle 25 homolog A (S. pombe) 2883 363 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10736.[MT7]-ESTNPEK[MT7].2y3_1.heavy 546.792 / 517.31 7773.0 14.143500328063965 44 16 10 10 8 3.2583362171556103 30.69050992143953 0.0 4 0.963046294518197 6.400100885623016 7773.0 20.024733045895957 2.0 - - - - - - - 754.5714285714286 15 7 CDC25A cell division cycle 25 homolog A (S. pombe) 2885 363 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10736.[MT7]-ESTNPEK[MT7].2y6_1.heavy 546.792 / 819.433 3886.0 14.143500328063965 44 16 10 10 8 3.2583362171556103 30.69050992143953 0.0 4 0.963046294518197 6.400100885623016 3886.0 20.534715719063545 2.0 - - - - - - - 181.8235294117647 14 17 CDC25A cell division cycle 25 homolog A (S. pombe) 2887 364 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9108.[MT7]-AFYLGK[MT7].2b3_1.heavy 493.799 / 526.278 42345.0 28.71809959411621 46 16 10 10 10 7.583895855762014 13.18583507763006 0.0 3 0.9671343020828865 6.788819445783459 42345.0 67.47190591390098 0.0 - - - - - - - 329.0 84 6 CUL4A cullin 4A 2889 364 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9108.[MT7]-AFYLGK[MT7].2y4_1.heavy 493.799 / 624.384 53316.0 28.71809959411621 46 16 10 10 10 7.583895855762014 13.18583507763006 0.0 3 0.9671343020828865 6.788819445783459 53316.0 142.10887448163075 0.0 - - - - - - - 267.8888888888889 106 9 CUL4A cullin 4A 2891 364 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9108.[MT7]-AFYLGK[MT7].2y5_1.heavy 493.799 / 771.452 56607.0 28.71809959411621 46 16 10 10 10 7.583895855762014 13.18583507763006 0.0 3 0.9671343020828865 6.788819445783459 56607.0 71.47651209246868 0.0 - - - - - - - 344.7142857142857 113 7 CUL4A cullin 4A 2893 364 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9108.[MT7]-AFYLGK[MT7].2y2_1.heavy 493.799 / 348.236 68455.0 28.71809959411621 46 16 10 10 10 7.583895855762014 13.18583507763006 0.0 3 0.9671343020828865 6.788819445783459 68455.0 116.51124654692546 0.0 - - - - - - - 329.0 136 4 CUL4A cullin 4A 2895 365 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10737.[MT7]-LGNEYPK[MT7].2b4_1.heavy 554.816 / 558.3 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2897 365 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10737.[MT7]-LGNEYPK[MT7].2y3_1.heavy 554.816 / 551.331 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2899 365 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10737.[MT7]-LGNEYPK[MT7].2y6_1.heavy 554.816 / 851.438 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2901 365 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10737.[MT7]-LGNEYPK[MT7].2b5_1.heavy 554.816 / 721.364 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2903 366 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10734.[MT7]-NNSNLQR.2y6_1.heavy 495.266 / 731.38 4575.0 13.925299644470215 40 16 8 10 6 2.850365312711898 35.0832223343533 0.0 5 0.9647332337202925 6.552316536401164 4575.0 10.404025108749517 0.0 - - - - - - - 245.14285714285714 9 21 CDC25A cell division cycle 25 homolog A (S. pombe) 2905 366 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10734.[MT7]-NNSNLQR.2b5_1.heavy 495.266 / 687.354 2573.0 13.925299644470215 40 16 8 10 6 2.850365312711898 35.0832223343533 0.0 5 0.9647332337202925 6.552316536401164 2573.0 9.882023212389704 2.0 - - - - - - - 160.6875 11 16 CDC25A cell division cycle 25 homolog A (S. pombe) 2907 366 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10734.[MT7]-NNSNLQR.2y5_1.heavy 495.266 / 617.336 1716.0 13.925299644470215 40 16 8 10 6 2.850365312711898 35.0832223343533 0.0 5 0.9647332337202925 6.552316536401164 1716.0 9.444119223316982 3.0 - - - - - - - 194.86363636363637 5 22 CDC25A cell division cycle 25 homolog A (S. pombe) 2909 366 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10734.[MT7]-NNSNLQR.2b4_1.heavy 495.266 / 574.27 2764.0 13.925299644470215 40 16 8 10 6 2.850365312711898 35.0832223343533 0.0 5 0.9647332337202925 6.552316536401164 2764.0 14.48639705377142 0.0 - - - - - - - 149.57142857142858 5 21 CDC25A cell division cycle 25 homolog A (S. pombe) 2911 367 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10735.[MT7]-FANLIK[MT7].2y4_1.heavy 497.32 / 631.426 9208.0 30.403799057006836 47 17 10 10 10 3.431668180944328 29.140346539123126 0.0 3 0.9729784782203541 7.490738657881695 9208.0 20.687081807081807 0.0 - - - - - - - 727.8888888888889 18 9 CDC25A cell division cycle 25 homolog A (S. pombe) 2913 367 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10735.[MT7]-FANLIK[MT7].2y5_1.heavy 497.32 / 702.463 12482.0 30.403799057006836 47 17 10 10 10 3.431668180944328 29.140346539123126 0.0 3 0.9729784782203541 7.490738657881695 12482.0 32.75303520941679 0.0 - - - - - - - 292.42857142857144 24 7 CDC25A cell division cycle 25 homolog A (S. pombe) 2915 367 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10735.[MT7]-FANLIK[MT7].2b4_1.heavy 497.32 / 590.342 11050.0 30.403799057006836 47 17 10 10 10 3.431668180944328 29.140346539123126 0.0 3 0.9729784782203541 7.490738657881695 11050.0 27.992024479320897 0.0 - - - - - - - 316.27272727272725 22 11 CDC25A cell division cycle 25 homolog A (S. pombe) 2917 367 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10735.[MT7]-FANLIK[MT7].2y3_1.heavy 497.32 / 517.383 9617.0 30.403799057006836 47 17 10 10 10 3.431668180944328 29.140346539123126 0.0 3 0.9729784782203541 7.490738657881695 9617.0 16.63172363495341 0.0 - - - - - - - 281.5 19 8 CDC25A cell division cycle 25 homolog A (S. pombe) 2919 368 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10738.[MT7]-DLIGDFSK[MT7].2y5_1.heavy 591.834 / 697.364 35429.0 31.388200759887695 50 20 10 10 10 9.55252761274903 10.468433492569822 0.0 3 0.9952235986581864 17.850029928749983 35429.0 55.97774403992942 0.0 - - - - - - - 742.5 70 8 CDC25A cell division cycle 25 homolog A (S. pombe) 2921 368 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10738.[MT7]-DLIGDFSK[MT7].2y3_1.heavy 591.834 / 525.315 31025.0 31.388200759887695 50 20 10 10 10 9.55252761274903 10.468433492569822 0.0 3 0.9952235986581864 17.850029928749983 31025.0 23.815535248041773 0.0 - - - - - - - 821.0 62 7 CDC25A cell division cycle 25 homolog A (S. pombe) 2923 368 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10738.[MT7]-DLIGDFSK[MT7].2y6_1.heavy 591.834 / 810.448 15512.0 31.388200759887695 50 20 10 10 10 9.55252761274903 10.468433492569822 0.0 3 0.9952235986581864 17.850029928749983 15512.0 26.930347914634453 0.0 - - - - - - - 745.0 31 9 CDC25A cell division cycle 25 homolog A (S. pombe) 2925 368 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10738.[MT7]-DLIGDFSK[MT7].2b5_1.heavy 591.834 / 658.353 10533.0 31.388200759887695 50 20 10 10 10 9.55252761274903 10.468433492569822 0.0 3 0.9952235986581864 17.850029928749983 10533.0 15.638353758071002 0.0 - - - - - - - 814.25 21 8 CDC25A cell division cycle 25 homolog A (S. pombe) 2927 369 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 ENO_ECO24.IQLVGDDLFVTNTK.2y8.peptide 781.92 / 937.5 228301.0 36.21149826049805 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 228301.0 245.5724655529815 0.0 - - - - - - - 774.0 456 1 2929 369 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 ENO_ECO24.IQLVGDDLFVTNTK.2y6.peptide 781.92 / 709.39 418965.0 36.21149826049805 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 418965.0 243.47870246809185 0.0 - - - - - - - 2633.0 837 1 2931 369 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 ENO_ECO24.IQLVGDDLFVTNTK.2y5.peptide 781.92 / 562.32 523060.0 36.21149826049805 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 523060.0 165.27798766030585 0.0 - - - - - - - 3407.0 1046 1 2933 370 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9501.[MT7]-RAQLQELLLQQIAFK[MT7].2b8_1.heavy 1044.13 / 1096.66 N/A N/A - - - - - - - - - 0.0 - - - - - - - TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 2935 370 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9501.[MT7]-RAQLQELLLQQIAFK[MT7].2b6_1.heavy 1044.13 / 870.491 N/A N/A - - - - - - - - - 0.0 - - - - - - - TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 2937 370 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9501.[MT7]-RAQLQELLLQQIAFK[MT7].2y3_1.heavy 1044.13 / 509.32 N/A N/A - - - - - - - - - 0.0 - - - - - - - TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 2939 370 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9501.[MT7]-RAQLQELLLQQIAFK[MT7].2b7_1.heavy 1044.13 / 983.575 N/A N/A - - - - - - - - - 0.0 - - - - - - - TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 2941 371 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10741.[MT7]-LLGC[CAM]SPALK[MT7].2y4_1.heavy 623.875 / 572.389 1324.0 32.771124839782715 22 3 10 3 6 0.9028976985331493 70.51891173216673 0.07950210571289062 6 0.5286923062094442 1.721678357280361 1324.0 2.4000000000000004 31.0 - - - - - - - 257.6666666666667 18 6 CDC25A cell division cycle 25 homolog A (S. pombe) 2943 371 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10741.[MT7]-LLGC[CAM]SPALK[MT7].2y8_1.heavy 623.875 / 989.557 35529.0 32.771124839782715 22 3 10 3 6 0.9028976985331493 70.51891173216673 0.07950210571289062 6 0.5286923062094442 1.721678357280361 35529.0 68.40237825594565 0.0 - - - - - - - 717.25 71 8 CDC25A cell division cycle 25 homolog A (S. pombe) 2945 371 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10741.[MT7]-LLGC[CAM]SPALK[MT7].2y5_1.heavy 623.875 / 659.421 2869.0 32.771124839782715 22 3 10 3 6 0.9028976985331493 70.51891173216673 0.07950210571289062 6 0.5286923062094442 1.721678357280361 2869.0 2.6660782979204285 2.0 - - - - - - - 788.2857142857143 21 7 CDC25A cell division cycle 25 homolog A (S. pombe) 2947 371 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10741.[MT7]-LLGC[CAM]SPALK[MT7].2y7_1.heavy 623.875 / 876.473 4414.0 32.771124839782715 22 3 10 3 6 0.9028976985331493 70.51891173216673 0.07950210571289062 6 0.5286923062094442 1.721678357280361 4414.0 20.525074538858906 2.0 - - - - - - - 269.8888888888889 15 9 CDC25A cell division cycle 25 homolog A (S. pombe) 2949 372 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9502.[MT7]-RAQLQELLLQQIAFK[MT7].4b8_1.heavy 522.57 / 1096.66 651.0 38.79294967651367 33 7 10 6 10 0.916788108105814 69.45395037598729 0.03900146484375 3 0.7178946791390811 2.266593750848587 651.0 -0.2795705521472396 0.0 - - - - - - - 0.0 1 0 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 2951 372 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9502.[MT7]-RAQLQELLLQQIAFK[MT7].4b7_1.heavy 522.57 / 983.575 11552.0 38.79294967651367 33 7 10 6 10 0.916788108105814 69.45395037598729 0.03900146484375 3 0.7178946791390811 2.266593750848587 11552.0 134.65521472392638 0.0 - - - - - - - 232.57142857142858 23 7 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 2953 372 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9502.[MT7]-RAQLQELLLQQIAFK[MT7].4y3_1.heavy 522.57 / 509.32 120893.0 38.79294967651367 33 7 10 6 10 0.916788108105814 69.45395037598729 0.03900146484375 3 0.7178946791390811 2.266593750848587 120893.0 760.3466362494862 0.0 - - - - - - - 244.0 241 10 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 2955 372 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9502.[MT7]-RAQLQELLLQQIAFK[MT7].4b6_1.heavy 522.57 / 870.491 20339.0 38.79294967651367 33 7 10 6 10 0.916788108105814 69.45395037598729 0.03900146484375 3 0.7178946791390811 2.266593750848587 20339.0 77.1048155737705 0.0 - - - - - - - 379.55555555555554 40 9 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) 2957 373 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10742.[MT7]-ENEAFEFK[MT7].3y3_1.heavy 434.559 / 567.326 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2959 373 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10742.[MT7]-ENEAFEFK[MT7].3b4_1.heavy 434.559 / 588.275 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2961 373 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10742.[MT7]-ENEAFEFK[MT7].3b3_1.heavy 434.559 / 517.237 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2963 373 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10742.[MT7]-ENEAFEFK[MT7].3y2_1.heavy 434.559 / 438.283 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2965 374 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10743.[MT7]-GYLFHTVAGK[MT7].3b4_1.heavy 460.934 / 625.347 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2967 374 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10743.[MT7]-GYLFHTVAGK[MT7].3y4_1.heavy 460.934 / 518.342 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2969 374 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10743.[MT7]-GYLFHTVAGK[MT7].3b3_1.heavy 460.934 / 478.278 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2971 374 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10743.[MT7]-GYLFHTVAGK[MT7].3y5_1.heavy 460.934 / 619.39 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2973 375 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10744.[MT7]-SQEESPPGSTK[MT7].3b4_1.heavy 478.915 / 618.285 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2975 375 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10744.[MT7]-SQEESPPGSTK[MT7].3b5_1.heavy 478.915 / 705.317 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2977 375 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10744.[MT7]-SQEESPPGSTK[MT7].3y4_1.heavy 478.915 / 536.316 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2979 375 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10744.[MT7]-SQEESPPGSTK[MT7].3y5_1.heavy 478.915 / 633.369 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2981 376 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10740.[MT7]-SRTWAGEK[MT7].3y3_1.heavy 408.231 / 477.279 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2983 376 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10740.[MT7]-SRTWAGEK[MT7].3b4_1.heavy 408.231 / 675.37 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2985 376 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10740.[MT7]-SRTWAGEK[MT7].3y4_1.heavy 408.231 / 548.316 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2987 376 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10740.[MT7]-SRTWAGEK[MT7].3y5_1.heavy 408.231 / 734.395 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2989 377 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10749.[MT7]-RLLFAC[CAM]SPPPASQPVVK[MT7].4y4_1.heavy 539.563 / 586.404 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2991 377 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10749.[MT7]-RLLFAC[CAM]SPPPASQPVVK[MT7].4b7_1.heavy 539.563 / 992.547 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2993 377 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10749.[MT7]-RLLFAC[CAM]SPPPASQPVVK[MT7].4b4_1.heavy 539.563 / 674.447 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2995 377 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10749.[MT7]-RLLFAC[CAM]SPPPASQPVVK[MT7].4b5_1.heavy 539.563 / 745.484 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 2997 378 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 RBSB_ECOLI.LAATIAQLPDQIGAK.3y7.peptide 503.96 / 728.39 168725.0 31.44040044148763 23 -3 10 6 10 null 0.0 0.039600372314453125 3 0.0 0.0 168725.0 154.18536126316764 0.0 - - - - - - - 249.33333333333334 337 3 2999 378 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 RBSB_ECOLI.LAATIAQLPDQIGAK.3y6.peptide 503.96 / 631.34 35354.0 31.44040044148763 23 -3 10 6 10 null 0.0 0.039600372314453125 3 0.0 0.0 35354.0 206.83035294117647 0.0 - - - - - - - 280.5 70 4 3001 378 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 RBSB_ECOLI.LAATIAQLPDQIGAK.3y5.peptide 503.96 / 516.31 24317.0 31.44040044148763 23 -3 10 6 10 null 0.0 0.039600372314453125 3 0.0 0.0 24317.0 77.74380825057295 0.0 - - - - - - - 257.125 48 8 3003 379 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10745.[MT7]-GTIENILDNDPR.3y6_1.heavy 500.931 / 729.353 3549.0 31.963099479675293 27 13 2 6 6 1.1226528210733673 59.74425660280056 0.03840065002441406 5 0.9209634580178204 4.360593489169973 3549.0 11.294813371131585 1.0 - - - - - - - 272.0 9 11 CDC25A cell division cycle 25 homolog A (S. pombe) 3005 379 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10745.[MT7]-GTIENILDNDPR.3b4_1.heavy 500.931 / 545.305 5043.0 31.963099479675293 27 13 2 6 6 1.1226528210733673 59.74425660280056 0.03840065002441406 5 0.9209634580178204 4.360593489169973 5043.0 10.467672834193918 0.0 - - - - - - - 257.125 10 8 CDC25A cell division cycle 25 homolog A (S. pombe) 3007 379 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10745.[MT7]-GTIENILDNDPR.3b5_1.heavy 500.931 / 659.348 9152.0 31.963099479675293 27 13 2 6 6 1.1226528210733673 59.74425660280056 0.03840065002441406 5 0.9209634580178204 4.360593489169973 9152.0 52.62323017560438 1.0 - - - - - - - 218.16666666666666 54 6 CDC25A cell division cycle 25 homolog A (S. pombe) 3009 379 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10745.[MT7]-GTIENILDNDPR.3y5_1.heavy 500.931 / 616.268 6724.0 31.963099479675293 27 13 2 6 6 1.1226528210733673 59.74425660280056 0.03840065002441406 5 0.9209634580178204 4.360593489169973 6724.0 42.260563108047165 1.0 - - - - - - - 747.0 42 8 CDC25A cell division cycle 25 homolog A (S. pombe) 3011 380 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10746.[MT7]-LFDSPSLC[CAM]SSSTR.3y6_1.heavy 534.263 / 697.293 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 3013 380 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10746.[MT7]-LFDSPSLC[CAM]SSSTR.3b4_1.heavy 534.263 / 607.321 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 3015 380 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10746.[MT7]-LFDSPSLC[CAM]SSSTR.3b3_1.heavy 534.263 / 520.289 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 3017 380 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10746.[MT7]-LFDSPSLC[CAM]SSSTR.3y5_1.heavy 534.263 / 537.263 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 3019 381 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10747.[MT7]-GC[CAM]LHSHGLQEGK[MT7].4b7_2.heavy 403.463 / 447.212 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 3021 381 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10747.[MT7]-GC[CAM]LHSHGLQEGK[MT7].4b4_1.heavy 403.463 / 612.304 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 3023 381 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10747.[MT7]-GC[CAM]LHSHGLQEGK[MT7].4y3_1.heavy 403.463 / 477.279 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 3025 381 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10747.[MT7]-GC[CAM]LHSHGLQEGK[MT7].4b3_1.heavy 403.463 / 475.246 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDC25A cell division cycle 25 homolog A (S. pombe) 3027 382 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10748.[MT7]-LLFAC[CAM]SPPPASQPVVK[MT7].3b6_1.heavy 667.048 / 836.446 4916.0 33.30303446451823 32 11 10 5 6 0.9066420058710883 66.91228045938969 0.040599822998046875 6 0.8552691006781765 3.2040475159415114 4916.0 5.377630285152409 0.0 - - - - - - - 271.4 9 5 CDC25A cell division cycle 25 homolog A (S. pombe) 3029 382 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10748.[MT7]-LLFAC[CAM]SPPPASQPVVK[MT7].3b4_1.heavy 667.048 / 589.383 11357.0 33.30303446451823 32 11 10 5 6 0.9066420058710883 66.91228045938969 0.040599822998046875 6 0.8552691006781765 3.2040475159415114 11357.0 15.996954277286132 0.0 - - - - - - - 605.7142857142857 22 7 CDC25A cell division cycle 25 homolog A (S. pombe) 3031 382 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10748.[MT7]-LLFAC[CAM]SPPPASQPVVK[MT7].3b3_1.heavy 667.048 / 518.346 4746.0 33.30303446451823 32 11 10 5 6 0.9066420058710883 66.91228045938969 0.040599822998046875 6 0.8552691006781765 3.2040475159415114 4746.0 0.5280244230570216 4.0 - - - - - - - 339.0 20 3 CDC25A cell division cycle 25 homolog A (S. pombe) 3033 382 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10748.[MT7]-LLFAC[CAM]SPPPASQPVVK[MT7].3y4_1.heavy 667.048 / 586.404 N/A 33.30303446451823 32 11 10 5 6 0.9066420058710883 66.91228045938969 0.040599822998046875 6 0.8552691006781765 3.2040475159415114 13052.0 6.419602511514734 1.0 - - - - - - - 678.3333333333334 26 3 CDC25A cell division cycle 25 homolog A (S. pombe) 3035 383 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9508.[MT7]-SYLYQILQGIVFC[CAM]HSR.3y6_1.heavy 710.043 / 805.377 18591.0 47.145724296569824 42 16 10 6 10 3.124466441593261 25.31155528517508 0.037700653076171875 3 0.9688164430364057 6.97050856761951 18591.0 71.88018218623482 0.0 - - - - - - - 259.625 37 16 CDK1 cyclin-dependent kinase 1 3037 383 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9508.[MT7]-SYLYQILQGIVFC[CAM]HSR.3b4_1.heavy 710.043 / 671.352 20371.0 47.145724296569824 42 16 10 6 10 3.124466441593261 25.31155528517508 0.037700653076171875 3 0.9688164430364057 6.97050856761951 20371.0 58.78537362680209 0.0 - - - - - - - 250.73333333333332 40 15 CDK1 cyclin-dependent kinase 1 3039 383 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9508.[MT7]-SYLYQILQGIVFC[CAM]HSR.3b5_1.heavy 710.043 / 799.411 34116.0 47.145724296569824 42 16 10 6 10 3.124466441593261 25.31155528517508 0.037700653076171875 3 0.9688164430364057 6.97050856761951 34116.0 61.67620733249053 0.0 - - - - - - - 281.7692307692308 68 13 CDK1 cyclin-dependent kinase 1 3041 383 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9508.[MT7]-SYLYQILQGIVFC[CAM]HSR.3b3_1.heavy 710.043 / 508.289 27590.0 47.145724296569824 42 16 10 6 10 3.124466441593261 25.31155528517508 0.037700653076171875 3 0.9688164430364057 6.97050856761951 27590.0 74.93120667422619 0.0 - - - - - - - 244.13333333333333 55 15 CDK1 cyclin-dependent kinase 1 3043 384 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9507.[MT7]-YIHPDDELVLEDELQR.3y7_1.heavy 710.027 / 902.458 147701.0 33.41059875488281 43 13 10 10 10 1.8740948896620548 42.13473614137407 0.0 3 0.9094613249204553 4.07017245143336 147701.0 216.89358905128924 0.0 - - - - - - - 213.75 295 4 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 3045 384 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9507.[MT7]-YIHPDDELVLEDELQR.3b3_1.heavy 710.027 / 558.316 96357.0 33.41059875488281 43 13 10 10 10 1.8740948896620548 42.13473614137407 0.0 3 0.9094613249204553 4.07017245143336 96357.0 118.02200293462445 0.0 - - - - - - - 171.0 192 1 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 3047 384 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9507.[MT7]-YIHPDDELVLEDELQR.3y8_1.heavy 710.027 / 1001.53 72225.0 33.41059875488281 43 13 10 10 10 1.8740948896620548 42.13473614137407 0.0 3 0.9094613249204553 4.07017245143336 72225.0 133.63239046249385 0.0 - - - - - - - 581.8 144 10 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 3049 384 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9507.[MT7]-YIHPDDELVLEDELQR.3b7_2.heavy 710.027 / 507.736 276234.0 33.41059875488281 43 13 10 10 10 1.8740948896620548 42.13473614137407 0.0 3 0.9094613249204553 4.07017245143336 276234.0 123.98894759685487 0.0 - - - - - - - 660.0 552 7 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 3051 385 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9509.[MT7]-LTDFGFC[CAM]AQITPEQSK[MT7].3b6_1.heavy 710.698 / 825.426 18101.0 35.10697364807129 42 16 10 6 10 3.0304914067216275 32.99794870831842 0.03170013427734375 3 0.9600011083425505 6.150069856126787 18101.0 71.74675158024809 0.0 - - - - - - - 779.5454545454545 36 11 PAK1;PAK2;PAK3 p21 protein (Cdc42/Rac)-activated kinase 1;p21 protein (Cdc42/Rac)-activated kinase 2;p21 protein (Cdc42/Rac)-activated kinase 3 3053 385 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9509.[MT7]-LTDFGFC[CAM]AQITPEQSK[MT7].3y6_1.heavy 710.698 / 833.448 28421.0 35.10697364807129 42 16 10 6 10 3.0304914067216275 32.99794870831842 0.03170013427734375 3 0.9600011083425505 6.150069856126787 28421.0 74.77320062198108 0.0 - - - - - - - 332.0 56 11 PAK1;PAK2;PAK3 p21 protein (Cdc42/Rac)-activated kinase 1;p21 protein (Cdc42/Rac)-activated kinase 2;p21 protein (Cdc42/Rac)-activated kinase 3 3055 385 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9509.[MT7]-LTDFGFC[CAM]AQITPEQSK[MT7].3b5_1.heavy 710.698 / 678.358 31438.0 35.10697364807129 42 16 10 6 10 3.0304914067216275 32.99794870831842 0.03170013427734375 3 0.9600011083425505 6.150069856126787 31438.0 28.201284634760707 0.0 - - - - - - - 839.4285714285714 62 7 PAK1;PAK2;PAK3 p21 protein (Cdc42/Rac)-activated kinase 1;p21 protein (Cdc42/Rac)-activated kinase 2;p21 protein (Cdc42/Rac)-activated kinase 3 3057 385 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9509.[MT7]-LTDFGFC[CAM]AQITPEQSK[MT7].3y5_1.heavy 710.698 / 732.401 63035.0 35.10697364807129 42 16 10 6 10 3.0304914067216275 32.99794870831842 0.03170013427734375 3 0.9600011083425505 6.150069856126787 63035.0 88.54604884355533 0.0 - - - - - - - 794.0 126 8 PAK1;PAK2;PAK3 p21 protein (Cdc42/Rac)-activated kinase 1;p21 protein (Cdc42/Rac)-activated kinase 2;p21 protein (Cdc42/Rac)-activated kinase 3 3059 386 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9504.[MT7]-FFLEDPTGTVQLDLSK[MT7].2b3_1.heavy 1049.57 / 552.33 7695.0 39.51969909667969 39 13 10 6 10 1.5715577679982944 54.847915296041876 0.03839874267578125 3 0.9077339123259718 4.0312908257935325 7695.0 37.686144675031215 0.0 - - - - - - - 223.0 15 6 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 3061 386 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9504.[MT7]-FFLEDPTGTVQLDLSK[MT7].2y9_1.heavy 1049.57 / 1104.64 1506.0 39.51969909667969 39 13 10 6 10 1.5715577679982944 54.847915296041876 0.03839874267578125 3 0.9077339123259718 4.0312908257935325 1506.0 -0.5 2.0 - - - - - - - 195.0 3 6 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 3063 386 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9504.[MT7]-FFLEDPTGTVQLDLSK[MT7].2b5_1.heavy 1049.57 / 796.4 33625.0 39.51969909667969 39 13 10 6 10 1.5715577679982944 54.847915296041876 0.03839874267578125 3 0.9077339123259718 4.0312908257935325 33625.0 128.17569275138254 0.0 - - - - - - - 272.0 67 8 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 3065 386 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9504.[MT7]-FFLEDPTGTVQLDLSK[MT7].2b1_1.heavy 1049.57 / 292.178 4851.0 39.51969909667969 39 13 10 6 10 1.5715577679982944 54.847915296041876 0.03839874267578125 3 0.9077339123259718 4.0312908257935325 4851.0 20.27283582089552 0.0 - - - - - - - 244.53846153846155 9 13 POLE2 polymerase (DNA directed), epsilon 2 (p59 subunit) 3067 387 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9503.[MT7]-IYDITNVLEGIQLIAK[MT7].3b6_1.heavy 697.748 / 864.458 70613.0 48.145198822021484 44 14 10 10 10 1.16279581576558 51.54605005851125 0.0 3 0.9373369832942642 4.904134326954274 70613.0 325.2141247204651 0.0 - - - - - - - 182.66666666666666 141 6 E2F1 E2F transcription factor 1 3069 387 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9503.[MT7]-IYDITNVLEGIQLIAK[MT7].3b4_1.heavy 697.748 / 649.368 43340.0 48.145198822021484 44 14 10 10 10 1.16279581576558 51.54605005851125 0.0 3 0.9373369832942642 4.904134326954274 43340.0 197.5891774471964 0.0 - - - - - - - 241.5 86 12 E2F1 E2F transcription factor 1 3071 387 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9503.[MT7]-IYDITNVLEGIQLIAK[MT7].3b3_1.heavy 697.748 / 536.284 52823.0 48.145198822021484 44 14 10 10 10 1.16279581576558 51.54605005851125 0.0 3 0.9373369832942642 4.904134326954274 52823.0 137.63477988626926 0.0 - - - - - - - 259.2307692307692 105 13 E2F1 E2F transcription factor 1 3073 387 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9503.[MT7]-IYDITNVLEGIQLIAK[MT7].3b7_1.heavy 697.748 / 963.527 66538.0 48.145198822021484 44 14 10 10 10 1.16279581576558 51.54605005851125 0.0 3 0.9373369832942642 4.904134326954274 66538.0 844.1645065143673 0.0 - - - - - - - 761.1428571428571 133 7 E2F1 E2F transcription factor 1 3075 388 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9506.[MT7]-LVTGTVLAVFGSVRDDGK[MT7].3y8_1.heavy 708.075 / 977.513 7006.0 40.75699996948242 44 14 10 10 10 2.2517547356929484 39.022737460371616 0.0 3 0.9376165402906205 4.915227614552912 7006.0 27.06815620557446 0.0 - - - - - - - 208.75 14 8 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 3077 388 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9506.[MT7]-LVTGTVLAVFGSVRDDGK[MT7].3y12_2.heavy 708.075 / 704.389 9341.0 40.75699996948242 44 14 10 10 10 2.2517547356929484 39.022737460371616 0.0 3 0.9376165402906205 4.915227614552912 9341.0 41.98415928143713 0.0 - - - - - - - 592.7777777777778 18 9 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 3079 388 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9506.[MT7]-LVTGTVLAVFGSVRDDGK[MT7].3y10_1.heavy 708.075 / 1223.65 5004.0 40.75699996948242 44 14 10 10 10 2.2517547356929484 39.022737460371616 0.0 3 0.9376165402906205 4.915227614552912 5004.0 38.97127185628742 0.0 - - - - - - - 278.3333333333333 10 6 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 3081 388 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9506.[MT7]-LVTGTVLAVFGSVRDDGK[MT7].3y9_1.heavy 708.075 / 1124.58 11676.0 40.75699996948242 44 14 10 10 10 2.2517547356929484 39.022737460371616 0.0 3 0.9376165402906205 4.915227614552912 11676.0 38.522047376311846 0.0 - - - - - - - 222.66666666666666 23 6 POLD2 polymerase (DNA directed), delta 2, regulatory subunit 50kDa 3083 389 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9510.[MT7]-QLAVLTELPFVVPFEER.3b4_1.heavy 711.069 / 556.357 239271.0 48.20802402496338 42 16 10 6 10 2.0805845625721884 32.887696377996775 0.035900115966796875 3 0.9638154755905297 6.46818746841891 239271.0 641.4174268761286 0.0 - - - - - - - 235.0 478 7 UBE3C ubiquitin protein ligase E3C 3085 389 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9510.[MT7]-QLAVLTELPFVVPFEER.3b5_1.heavy 711.069 / 669.442 136525.0 48.20802402496338 42 16 10 6 10 2.0805845625721884 32.887696377996775 0.035900115966796875 3 0.9638154755905297 6.46818746841891 136525.0 279.4336665290268 0.0 - - - - - - - 217.55555555555554 273 9 UBE3C ubiquitin protein ligase E3C 3087 389 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9510.[MT7]-QLAVLTELPFVVPFEER.3y5_1.heavy 711.069 / 677.325 292172.0 48.20802402496338 42 16 10 6 10 2.0805845625721884 32.887696377996775 0.035900115966796875 3 0.9638154755905297 6.46818746841891 292172.0 1285.8185442329227 0.0 - - - - - - - 141.0 584 5 UBE3C ubiquitin protein ligase E3C 3089 389 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9510.[MT7]-QLAVLTELPFVVPFEER.3y9_1.heavy 711.069 / 1119.58 185899.0 48.20802402496338 42 16 10 6 10 2.0805845625721884 32.887696377996775 0.035900115966796875 3 0.9638154755905297 6.46818746841891 185899.0 527.9028172704488 0.0 - - - - - - - 215.5 371 8 UBE3C ubiquitin protein ligase E3C 3091 390 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10754.[MT7]-EIC[CAM]C[CAM]ER.2b3_1.heavy 505.729 / 547.267 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3093 390 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10754.[MT7]-EIC[CAM]C[CAM]ER.2y4_1.heavy 505.729 / 624.223 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3095 390 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10754.[MT7]-EIC[CAM]C[CAM]ER.2y5_1.heavy 505.729 / 737.307 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3097 390 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10754.[MT7]-EIC[CAM]C[CAM]ER.2b4_1.heavy 505.729 / 707.297 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3099 391 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9511.[MT7]-LILC[CAM]PLMAAVTYIDEK[MT7].3y6_1.heavy 713.4 / 912.479 6882.0 49.55032444000244 40 14 10 6 10 2.1998849398402114 45.45692285491236 0.034297943115234375 3 0.9498876156779877 5.4898352625829245 6882.0 56.21701977541488 0.0 - - - - - - - 160.88888888888889 13 18 PLK1 polo-like kinase 1 3101 391 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9511.[MT7]-LILC[CAM]PLMAAVTYIDEK[MT7].3y3_1.heavy 713.4 / 535.284 5668.0 49.55032444000244 40 14 10 6 10 2.1998849398402114 45.45692285491236 0.034297943115234375 3 0.9498876156779877 5.4898352625829245 5668.0 23.309956709956708 1.0 - - - - - - - 160.30769230769232 12 13 PLK1 polo-like kinase 1 3103 391 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9511.[MT7]-LILC[CAM]PLMAAVTYIDEK[MT7].3b6_1.heavy 713.4 / 854.529 6940.0 49.55032444000244 40 14 10 6 10 2.1998849398402114 45.45692285491236 0.034297943115234375 3 0.9498876156779877 5.4898352625829245 6940.0 77.37701149425287 0.0 - - - - - - - 190.14285714285714 13 14 PLK1 polo-like kinase 1 3105 391 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9511.[MT7]-LILC[CAM]PLMAAVTYIDEK[MT7].3b4_1.heavy 713.4 / 644.392 9543.0 49.55032444000244 40 14 10 6 10 2.1998849398402114 45.45692285491236 0.034297943115234375 3 0.9498876156779877 5.4898352625829245 9543.0 72.26829461196243 0.0 - - - - - - - 191.6875 19 16 PLK1 polo-like kinase 1 3107 392 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10755.[MT7]-RLYDEK[MT7].3y3_1.heavy 371.216 / 535.284 4201.0 18.65130043029785 45 18 9 10 8 4.398780457825652 22.733573761812764 0.0 4 0.9865603086032895 10.633595111080396 4201.0 16.804000000000002 0.0 - - - - - - - 291.6666666666667 8 9 MDM2 Mdm2 p53 binding protein homolog (mouse) 3109 392 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10755.[MT7]-RLYDEK[MT7].3b4_1.heavy 371.216 / 692.385 2275.0 18.65130043029785 45 18 9 10 8 4.398780457825652 22.733573761812764 0.0 4 0.9865603086032895 10.633595111080396 2275.0 25.35 0.0 - - - - - - - 210.0 4 5 MDM2 Mdm2 p53 binding protein homolog (mouse) 3111 392 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10755.[MT7]-RLYDEK[MT7].3b3_1.heavy 371.216 / 577.358 1750.0 18.65130043029785 45 18 9 10 8 4.398780457825652 22.733573761812764 0.0 4 0.9865603086032895 10.633595111080396 1750.0 2.5999999999999996 3.0 - - - - - - - 272.22222222222223 14 9 MDM2 Mdm2 p53 binding protein homolog (mouse) 3113 392 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10755.[MT7]-RLYDEK[MT7].3y2_1.heavy 371.216 / 420.258 12427.0 18.65130043029785 45 18 9 10 8 4.398780457825652 22.733573761812764 0.0 4 0.9865603086032895 10.633595111080396 12427.0 11.054141231993674 2.0 - - - - - - - 675.0 31 7 MDM2 Mdm2 p53 binding protein homolog (mouse) 3115 393 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9512.[MT7]-RLERPQDRDTPVQNK[MT7].4y5_1.heavy 535.801 / 729.438 6348.0 16.79990005493164 45 17 10 10 8 7.538174580267323 13.265811097260862 0.0 4 0.9719242064863371 7.348098716914661 6348.0 26.794200550137532 0.0 - - - - - - - 199.28571428571428 12 7 CDC25B cell division cycle 25 homolog B (S. pombe) 3117 393 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9512.[MT7]-RLERPQDRDTPVQNK[MT7].4b7_2.heavy 535.801 / 520.292 6038.0 16.79990005493164 45 17 10 10 8 7.538174580267323 13.265811097260862 0.0 4 0.9719242064863371 7.348098716914661 6038.0 6.5366444056252275 3.0 - - - - - - - 774.0 21 8 CDC25B cell division cycle 25 homolog B (S. pombe) 3119 393 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9512.[MT7]-RLERPQDRDTPVQNK[MT7].4y3_1.heavy 535.801 / 533.316 14399.0 16.79990005493164 45 17 10 10 8 7.538174580267323 13.265811097260862 0.0 4 0.9719242064863371 7.348098716914661 14399.0 48.146616156553506 0.0 - - - - - - - 309.7142857142857 28 7 CDC25B cell division cycle 25 homolog B (S. pombe) 3121 393 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9512.[MT7]-RLERPQDRDTPVQNK[MT7].4b3_1.heavy 535.801 / 543.337 2168.0 16.79990005493164 45 17 10 10 8 7.538174580267323 13.265811097260862 0.0 4 0.9719242064863371 7.348098716914661 2168.0 3.941172816370715 3.0 - - - - - - - 309.5 9 10 CDC25B cell division cycle 25 homolog B (S. pombe) 3123 394 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10752.[MT7]-TIVNDSR.2y5_1.heavy 474.765 / 590.289 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3125 394 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10752.[MT7]-TIVNDSR.2b4_1.heavy 474.765 / 572.352 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3127 394 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10752.[MT7]-TIVNDSR.2y6_1.heavy 474.765 / 703.373 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3129 394 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10752.[MT7]-TIVNDSR.2b5_1.heavy 474.765 / 687.379 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3131 395 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9513.[MT7]-IYDITNVLEGIQLIRK[MT7].4y8_2.heavy 544.829 / 550.849 14408.0 43.64780044555664 39 9 10 10 10 0.7323271442522464 69.4602763771835 0.0 3 0.8083237074871173 2.7725772658546504 14408.0 114.25990373533998 0.0 - - - - - - - 170.14285714285714 28 7 E2F2 E2F transcription factor 2 3133 395 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9513.[MT7]-IYDITNVLEGIQLIRK[MT7].4y9_2.heavy 544.829 / 607.391 10695.0 43.64780044555664 39 9 10 10 10 0.7323271442522464 69.4602763771835 0.0 3 0.8083237074871173 2.7725772658546504 10695.0 85.45885753508236 0.0 - - - - - - - 178.6 21 5 E2F2 E2F transcription factor 2 3135 395 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9513.[MT7]-IYDITNVLEGIQLIRK[MT7].4b4_1.heavy 544.829 / 649.368 2525.0 43.64780044555664 39 9 10 10 10 0.7323271442522464 69.4602763771835 0.0 3 0.8083237074871173 2.7725772658546504 2525.0 10.530269058295964 0.0 - - - - - - - 361.0 5 7 E2F2 E2F transcription factor 2 3137 395 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A9513.[MT7]-IYDITNVLEGIQLIRK[MT7].4b3_1.heavy 544.829 / 536.284 9358.0 43.64780044555664 39 9 10 10 10 0.7323271442522464 69.4602763771835 0.0 3 0.8083237074871173 2.7725772658546504 9358.0 86.14274467267755 0.0 - - - - - - - 283.90909090909093 18 11 E2F2 E2F transcription factor 2 3139 396 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10753.[MT7]-GEISEK[MT7].2y4_1.heavy 475.773 / 620.374 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3141 396 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10753.[MT7]-GEISEK[MT7].2y5_1.heavy 475.773 / 749.416 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3143 396 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10753.[MT7]-GEISEK[MT7].2y3_1.heavy 475.773 / 507.289 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3145 396 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10753.[MT7]-GEISEK[MT7].2b5_1.heavy 475.773 / 660.332 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3147 397 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10751.[MT7]-SVGAQK[MT7].2y4_1.heavy 439.271 / 547.332 12475.0 14.401300430297852 36 20 2 10 4 5.645378167920281 17.713605187380978 0.0 8 0.9920434935313476 13.82651671898089 12475.0 131.17243162491383 1.0 - - - - - - - 215.94444444444446 24 18 MDM2 Mdm2 p53 binding protein homolog (mouse) 3149 397 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10751.[MT7]-SVGAQK[MT7].2y5_1.heavy 439.271 / 646.4 9156.0 14.401300430297852 36 20 2 10 4 5.645378167920281 17.713605187380978 0.0 8 0.9920434935313476 13.82651671898089 9156.0 24.012833080830585 1.0 - - - - - - - 266.9047619047619 30 21 MDM2 Mdm2 p53 binding protein homolog (mouse) 3151 397 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10751.[MT7]-SVGAQK[MT7].2y3_1.heavy 439.271 / 490.311 3319.0 14.401300430297852 36 20 2 10 4 5.645378167920281 17.713605187380978 0.0 8 0.9920434935313476 13.82651671898089 3319.0 12.410658178734307 5.0 - - - - - - - 297.4 57 10 MDM2 Mdm2 p53 binding protein homolog (mouse) 3153 397 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10751.[MT7]-SVGAQK[MT7].2b5_1.heavy 439.271 / 587.327 2518.0 14.401300430297852 36 20 2 10 4 5.645378167920281 17.713605187380978 0.0 8 0.9920434935313476 13.82651671898089 2518.0 3.220916576967332 15.0 - - - - - - - 272.84615384615387 15 13 MDM2 Mdm2 p53 binding protein homolog (mouse) 3155 398 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10758.[MT7]-DK[MT7]GEISEK[MT7].3y3_1.heavy 446.593 / 507.289 5775.0 16.30229949951172 40 16 8 10 6 2.3222102793284174 36.01118744366015 0.0 6 0.9622818272313831 6.33450148139622 5775.0 9.335526315789474 1.0 - - - - - - - 684.0 12 8 MDM2 Mdm2 p53 binding protein homolog (mouse) 3157 398 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10758.[MT7]-DK[MT7]GEISEK[MT7].3b4_1.heavy 446.593 / 718.397 2887.0 16.30229949951172 40 16 8 10 6 2.3222102793284174 36.01118744366015 0.0 6 0.9622818272313831 6.33450148139622 2887.0 8.02472039473684 0.0 - - - - - - - 276.3636363636364 5 11 MDM2 Mdm2 p53 binding protein homolog (mouse) 3159 398 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10758.[MT7]-DK[MT7]GEISEK[MT7].3y7_2.heavy 446.593 / 539.821 2583.0 16.30229949951172 40 16 8 10 6 2.3222102793284174 36.01118744366015 0.0 6 0.9622818272313831 6.33450148139622 2583.0 16.99342105263158 0.0 - - - - - - - 185.77777777777777 5 9 MDM2 Mdm2 p53 binding protein homolog (mouse) 3161 398 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10758.[MT7]-DK[MT7]GEISEK[MT7].3y4_1.heavy 446.593 / 620.374 3799.0 16.30229949951172 40 16 8 10 6 2.3222102793284174 36.01118744366015 0.0 6 0.9622818272313831 6.33450148139622 3799.0 3.464997009569378 3.0 - - - - - - - 1693.7142857142858 15 7 MDM2 Mdm2 p53 binding protein homolog (mouse) 3163 399 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10759.[MT7]-C[CAM]HLEGGSDQK[MT7].3y3_1.heavy 473.569 / 534.3 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3165 399 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10759.[MT7]-C[CAM]HLEGGSDQK[MT7].3y6_1.heavy 473.569 / 735.375 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3167 399 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10759.[MT7]-C[CAM]HLEGGSDQK[MT7].3y4_1.heavy 473.569 / 621.332 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3169 399 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10759.[MT7]-C[CAM]HLEGGSDQK[MT7].3b3_1.heavy 473.569 / 555.283 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3171 400 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10756.[MT7]-ENWLPEDK[MT7].3y3_1.heavy 440.234 / 535.284 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3173 400 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10756.[MT7]-ENWLPEDK[MT7].3b4_1.heavy 440.234 / 687.358 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3175 400 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10756.[MT7]-ENWLPEDK[MT7].3b3_1.heavy 440.234 / 574.274 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3177 400 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10756.[MT7]-ENWLPEDK[MT7].3y4_1.heavy 440.234 / 632.337 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3179 401 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10757.[MT7]-NK[MT7]PC[CAM]PVC[CAM]R.3b6_2.heavy 440.237 / 492.781 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3181 401 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10757.[MT7]-NK[MT7]PC[CAM]PVC[CAM]R.3b1_1.heavy 440.237 / 259.152 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3183 401 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10757.[MT7]-NK[MT7]PC[CAM]PVC[CAM]R.3y7_2.heavy 440.237 / 530.779 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3185 401 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10757.[MT7]-NK[MT7]PC[CAM]PVC[CAM]R.3y5_1.heavy 440.237 / 691.301 N/A N/A - - - - - - - - - 0.0 - - - - - - - MDM2 Mdm2 p53 binding protein homolog (mouse) 3187 402 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 BLAT_ECOLX.VAGPLLRSALPAGWFIADK.3y7.peptide 661.38 / 836.43 374128.0 39.589131673177086 23 -3 10 6 10 null 0.0 0.03730010986328125 3 0.0 0.0 374128.0 320.0372627800457 0.0 - - - - - - - 668.0 748 2 3189 402 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 BLAT_ECOLX.VAGPLLRSALPAGWFIADK.3y9.peptide 661.38 / 502.76 706634.0 39.589131673177086 23 -3 10 6 10 null 0.0 0.03730010986328125 3 0.0 0.0 706634.0 261.4317909660552 0.0 - - - - - - - 2086.5 1413 2 3191 402 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 BLAT_ECOLX.VAGPLLRSALPAGWFIADK.3y17.peptide 661.38 / 906.51 630247.0 39.589131673177086 23 -3 10 6 10 null 0.0 0.03730010986328125 3 0.0 0.0 630247.0 255.6477493000235 0.0 - - - - - - - 2211.75 1260 4 3193 403 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10706.[MT7]-ALPPEVK[MT7].2y4_1.heavy 521.331 / 616.379 23694.0 22.59269905090332 45 15 10 10 10 2.8964557665825796 34.524953273491995 0.0 3 0.9579164366463271 5.99475133167827 23694.0 41.5075934798764 0.0 - - - - - - - 0.0 47 0 ELK1 ELK1, member of ETS oncogene family 3195 403 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10706.[MT7]-ALPPEVK[MT7].2y5_1.heavy 521.331 / 713.431 67329.0 22.59269905090332 45 15 10 10 10 2.8964557665825796 34.524953273491995 0.0 3 0.9579164366463271 5.99475133167827 67329.0 106.62807778405755 0.0 - - - - - - - 0.0 134 0 ELK1 ELK1, member of ETS oncogene family 3197 403 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10706.[MT7]-ALPPEVK[MT7].2y3_1.heavy 521.331 / 519.326 5923.0 22.59269905090332 45 15 10 10 10 2.8964557665825796 34.524953273491995 0.0 3 0.9579164366463271 5.99475133167827 5923.0 7.422493670886076 2.0 - - - - - - - 0.0 11 0 ELK1 ELK1, member of ETS oncogene family 3199 403 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10706.[MT7]-ALPPEVK[MT7].2y6_1.heavy 521.331 / 826.516 10070.0 22.59269905090332 45 15 10 10 10 2.8964557665825796 34.524953273491995 0.0 3 0.9579164366463271 5.99475133167827 10070.0 50.26120918891005 0.0 - - - - - - - 0.0 20 0 ELK1 ELK1, member of ETS oncogene family 3201 404 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10705.[MT7]-YYYDK[MT7].2b3_1.heavy 520.271 / 634.299 3131.0 22.62929916381836 45 15 10 10 10 2.074138060327134 48.212798324634164 0.0 3 0.9536882491587149 5.7125008332073515 3131.0 2.8803536190348247 0.0 - - - - - - - 782.6363636363636 6 11 ELK1;ELK3;ERG;ETS1;ETS2;FLI1;FEV ELK1, member of ETS oncogene family;ELK3, ETS-domain protein (SRF accessory protein 2);v-ets erythroblastosis virus E26 oncogene homolog (avian);v-ets erythroblastosis virus E26 oncogene homolog 1 (avian);v-ets erythroblastosis virus E26 oncogene homolog 2 (avian);Friend leukemia virus integration 1;FEV (ETS oncogene family) 3203 404 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10705.[MT7]-YYYDK[MT7].2y4_1.heavy 520.271 / 732.369 43052.0 22.62929916381836 45 15 10 10 10 2.074138060327134 48.212798324634164 0.0 3 0.9536882491587149 5.7125008332073515 43052.0 87.97343550446999 0.0 - - - - - - - 729.4545454545455 86 11 ELK1;ELK3;ERG;ETS1;ETS2;FLI1;FEV ELK1, member of ETS oncogene family;ELK3, ETS-domain protein (SRF accessory protein 2);v-ets erythroblastosis virus E26 oncogene homolog (avian);v-ets erythroblastosis virus E26 oncogene homolog 1 (avian);v-ets erythroblastosis virus E26 oncogene homolog 2 (avian);Friend leukemia virus integration 1;FEV (ETS oncogene family) 3205 404 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10705.[MT7]-YYYDK[MT7].2b4_1.heavy 520.271 / 749.326 25440.0 22.62929916381836 45 15 10 10 10 2.074138060327134 48.212798324634164 0.0 3 0.9536882491587149 5.7125008332073515 25440.0 64.75681483262089 0.0 - - - - - - - 726.8571428571429 50 7 ELK1;ELK3;ERG;ETS1;ETS2;FLI1;FEV ELK1, member of ETS oncogene family;ELK3, ETS-domain protein (SRF accessory protein 2);v-ets erythroblastosis virus E26 oncogene homolog (avian);v-ets erythroblastosis virus E26 oncogene homolog 1 (avian);v-ets erythroblastosis virus E26 oncogene homolog 2 (avian);Friend leukemia virus integration 1;FEV (ETS oncogene family) 3207 404 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10705.[MT7]-YYYDK[MT7].2y3_1.heavy 520.271 / 569.305 25831.0 22.62929916381836 45 15 10 10 10 2.074138060327134 48.212798324634164 0.0 3 0.9536882491587149 5.7125008332073515 25831.0 57.139512068043615 0.0 - - - - - - - 763.1 51 10 ELK1;ELK3;ERG;ETS1;ETS2;FLI1;FEV ELK1, member of ETS oncogene family;ELK3, ETS-domain protein (SRF accessory protein 2);v-ets erythroblastosis virus E26 oncogene homolog (avian);v-ets erythroblastosis virus E26 oncogene homolog 1 (avian);v-ets erythroblastosis virus E26 oncogene homolog 2 (avian);Friend leukemia virus integration 1;FEV (ETS oncogene family) 3209 405 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10702.[MT7]-VEGPK[MT7].2b3_1.heavy 409.255 / 430.242 4909.0 15.689800262451172 41 11 10 10 10 21.25667182774642 4.704405318497207 0.0 3 0.8761497819111826 3.469974614033243 4909.0 5.099918652572532 1.0 - - - - - - - 314.22222222222223 9 9 ELK1 ELK1, member of ETS oncogene family 3211 405 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10702.[MT7]-VEGPK[MT7].2y4_1.heavy 409.255 / 574.332 298.0 15.689800262451172 41 11 10 10 10 21.25667182774642 4.704405318497207 0.0 3 0.8761497819111826 3.469974614033243 298.0 -0.05352476011379528 45.0 - - - - - - - 312.6 67 10 ELK1 ELK1, member of ETS oncogene family 3213 405 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10702.[MT7]-VEGPK[MT7].2y3_1.heavy 409.255 / 445.289 34515.0 15.689800262451172 41 11 10 10 10 21.25667182774642 4.704405318497207 0.0 3 0.8761497819111826 3.469974614033243 34515.0 43.41944954826645 0.0 - - - - - - - 297.8333333333333 69 6 ELK1 ELK1, member of ETS oncogene family 3215 405 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10702.[MT7]-VEGPK[MT7].2y2_1.heavy 409.255 / 388.268 23506.0 15.689800262451172 41 11 10 10 10 21.25667182774642 4.704405318497207 0.0 3 0.8761497819111826 3.469974614033243 23506.0 12.378509803921567 0.0 - - - - - - - 446.0 47 1 ELK1 ELK1, member of ETS oncogene family 3217 406 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10701.[MT7]-VSGQK[MT7].2y4_1.heavy 403.752 / 563.327 79532.0 13.805100440979004 46 20 10 10 6 6.7478201913917815 14.819600576727039 0.0 6 0.9948556900063941 17.199366446644788 79532.0 176.7274549124207 0.0 - - - - - - - 718.2727272727273 159 11 ELK1;ENTPD6 ELK1, member of ETS oncogene family;ectonucleoside triphosphate diphosphohydrolase 6 (putative) 3219 406 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10701.[MT7]-VSGQK[MT7].2b4_1.heavy 403.752 / 516.29 6584.0 13.805100440979004 46 20 10 10 6 6.7478201913917815 14.819600576727039 0.0 6 0.9948556900063941 17.199366446644788 6584.0 30.957378129117256 4.0 - - - - - - - 726.1818181818181 43 11 ELK1;ENTPD6 ELK1, member of ETS oncogene family;ectonucleoside triphosphate diphosphohydrolase 6 (putative) 3221 406 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10701.[MT7]-VSGQK[MT7].2y3_1.heavy 403.752 / 476.295 12641.0 13.805100440979004 46 20 10 10 6 6.7478201913917815 14.819600576727039 0.0 6 0.9948556900063941 17.199366446644788 12641.0 25.80140857813113 0.0 - - - - - - - 643.5555555555555 25 9 ELK1;ENTPD6 ELK1, member of ETS oncogene family;ectonucleoside triphosphate diphosphohydrolase 6 (putative) 3223 406 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10701.[MT7]-VSGQK[MT7].2y2_1.heavy 403.752 / 419.273 3862.0 13.805100440979004 46 20 10 10 6 6.7478201913917815 14.819600576727039 0.0 6 0.9948556900063941 17.199366446644788 3862.0 6.799897365114756 1.0 - - - - - - - 710.1818181818181 15 11 ELK1;ENTPD6 ELK1, member of ETS oncogene family;ectonucleoside triphosphate diphosphohydrolase 6 (putative) 3225 407 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10704.[MT7]-DGGEFK[MT7].2y4_1.heavy 470.753 / 624.347 4551.0 18.73900032043457 39 17 6 10 6 2.7387859257425355 36.51252880339238 0.0 5 0.9791239558709877 8.526677339855214 4551.0 2.8172341279287245 3.0 - - - - - - - 795.4545454545455 52 11 ELK1 ELK1, member of ETS oncogene family 3227 407 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10704.[MT7]-DGGEFK[MT7].2y5_1.heavy 470.753 / 681.369 17677.0 18.73900032043457 39 17 6 10 6 2.7387859257425355 36.51252880339238 0.0 5 0.9791239558709877 8.526677339855214 17677.0 42.176862857142865 1.0 - - - - - - - 262.5 47 4 ELK1 ELK1, member of ETS oncogene family 3229 407 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10704.[MT7]-DGGEFK[MT7].2b4_1.heavy 470.753 / 503.222 7176.0 18.73900032043457 39 17 6 10 6 2.7387859257425355 36.51252880339238 0.0 5 0.9791239558709877 8.526677339855214 7176.0 5.968632663425959 2.0 - - - - - - - 700.0 15 8 ELK1 ELK1, member of ETS oncogene family 3231 407 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10704.[MT7]-DGGEFK[MT7].2b5_1.heavy 470.753 / 650.29 4901.0 18.73900032043457 39 17 6 10 6 2.7387859257425355 36.51252880339238 0.0 5 0.9791239558709877 8.526677339855214 4901.0 8.96182857142857 3.0 - - - - - - - 725.0 26 7 ELK1 ELK1, member of ETS oncogene family 3233 408 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10718.[MT7]-GFVPETTK[MT7].2y4_1.heavy 583.837 / 622.353 8322.0 23.684099197387695 50 20 10 10 10 2.2252432466087737 31.15153536329377 0.0 3 0.9988732252365364 36.762329750122866 8322.0 18.204375 0.0 - - - - - - - 286.0 16 8 ELK1 ELK1, member of ETS oncogene family 3235 408 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10718.[MT7]-GFVPETTK[MT7].2y5_1.heavy 583.837 / 719.406 204105.0 23.684099197387695 50 20 10 10 10 2.2252432466087737 31.15153536329377 0.0 3 0.9988732252365364 36.762329750122866 204105.0 266.2966812320273 0.0 - - - - - - - 249.6 408 5 ELK1 ELK1, member of ETS oncogene family 3237 408 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10718.[MT7]-GFVPETTK[MT7].2y6_1.heavy 583.837 / 818.474 15812.0 23.684099197387695 50 20 10 10 10 2.2252432466087737 31.15153536329377 0.0 3 0.9988732252365364 36.762329750122866 15812.0 30.787788461538465 0.0 - - - - - - - 302.54545454545456 31 11 ELK1 ELK1, member of ETS oncogene family 3239 408 20120510_pMRM_Cell_cycle_and_ub_set02_02 20120510_pMRM_Cell_cycle_and_ub_set02_02 A10718.[MT7]-GFVPETTK[MT7].2b5_1.heavy 583.837 / 674.363 6242.0 23.684099197387695 50 20 10 10 10 2.2252432466087737 31.15153536329377 0.0 3 0.9988732252365364 36.762329750122866 6242.0 14.254567307692309 0.0 - - - - - - - 291.2 12 10 ELK1 ELK1, member of ETS oncogene family