Index Sample Index Original Filename Sample Name Sample ID Sample Comment Sample Type Acquisition Date & Time Rack Number Plate Number Vial Number Dilution Factor Injection Volume Operator Name Acq. Method Name IS Component Name Component Index Component Comment IS Comment Mass Info IS Mass Info IS Name Component Group Name Conc. Units Failed Query IS Failed Query Peak Comment IS Peak Comment Actual Concentration IS Actual Concentration Concentration Ratio Expected RT IS Expected RT Integration Type IS Integration Type Area IS Area Corrected Area IS Corrected Area Area Ratio Height IS Height Corrected Height IS Corrected Height Height Ratio Area / Height IS Area / Height Corrected Area/Height IS Corrected Area/Height Region Height IS Region Height Quality IS Quality Retention Time IS Retention Time Start Time IS Start Time End Time IS End Time Total Width IS Total Width Width at 50% IS Width at 50% Signal / Noise IS Signal / Noise Baseline Delta / Height IS Baseline Delta / Height Modified Relative RT Used Calculated Concentration Accuracy SF Peak Width Confidence SF Model Source SF Candidate Model Quality SF Asymmetry SF Saturated SF Integration Quality SF Group Confidence SF Num Peaks Score_IMPAQT MSSimScore_IMPAQT HeightScore_IMPAQT RTminScore_IMPAQT RankScore_IMPAQT MSSim_IMPAQT MSSimSita_IMPAQT RTminDiff_IMPAQT RankSum_IMPAQT CosSimilarity_IMPAQT CosSimilaritySita_IMPAQT Height_IMPAQT InterfereTrans_IMPAQT InterfereTransAll_IMPAQT LScore_IMPAQT LRTminScore_IMPAQT LSNScore_IMPAQT LSNAllScore_IMPAQT HLSimScore_IMPAQT HLSim_IMPAQT HLSimSita_IMPAQT BaseLine_IMPAQT BaseLineUnitNum_IMPAQT BaseLineMaxCount_IMPAQT Symbol Description 1 1 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1407.[MT7]-NSDLLTSPDVGLLK[MT7].3y7_1.heavy 587.34 / 885.553 25587.0 34.481201171875 50 20 10 10 10 10.30467735090973 9.70433101344718 0.0 3 0.9942571466565315 16.277602805102546 25587.0 72.01428685560687 0.0 - - - - - - - 288.8 51 5 JUN jun proto-oncogene 3 1 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1407.[MT7]-NSDLLTSPDVGLLK[MT7].3y3_1.heavy 587.34 / 517.383 32397.0 34.481201171875 50 20 10 10 10 10.30467735090973 9.70433101344718 0.0 3 0.9942571466565315 16.277602805102546 32397.0 48.02186830210415 0.0 - - - - - - - 309.5 64 2 JUN jun proto-oncogene 5 1 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1407.[MT7]-NSDLLTSPDVGLLK[MT7].3b5_1.heavy 587.34 / 687.379 52207.0 34.481201171875 50 20 10 10 10 10.30467735090973 9.70433101344718 0.0 3 0.9942571466565315 16.277602805102546 52207.0 59.6008831448573 0.0 - - - - - - - 344.0 104 3 JUN jun proto-oncogene 7 1 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1407.[MT7]-NSDLLTSPDVGLLK[MT7].3y5_1.heavy 587.34 / 673.473 25794.0 34.481201171875 50 20 10 10 10 10.30467735090973 9.70433101344718 0.0 3 0.9942571466565315 16.277602805102546 25794.0 89.97183394232886 0.0 - - - - - - - 309.5 51 6 JUN jun proto-oncogene 9 2 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1304.[MT7]-LNFANPPFK[MT7].2b3_1.heavy 668.387 / 519.305 27414.0 33.317100524902344 41 11 10 10 10 1.150840710040099 67.01313947178106 0.0 3 0.8750500936084374 3.4543393883311087 27414.0 12.702044868151614 0.0 - - - - - - - 252.0 54 1 MAP2K4 mitogen-activated protein kinase kinase 4 11 2 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1304.[MT7]-LNFANPPFK[MT7].2y4_1.heavy 668.387 / 632.389 100349.0 33.317100524902344 41 11 10 10 10 1.150840710040099 67.01313947178106 0.0 3 0.8750500936084374 3.4543393883311087 100349.0 86.13747914810705 0.0 - - - - - - - 1006.0 200 2 MAP2K4 mitogen-activated protein kinase kinase 4 13 2 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1304.[MT7]-LNFANPPFK[MT7].2y3_1.heavy 668.387 / 535.336 25905.0 33.317100524902344 41 11 10 10 10 1.150840710040099 67.01313947178106 0.0 3 0.8750500936084374 3.4543393883311087 25905.0 17.16699801192843 0.0 - - - - - - - 252.0 51 3 MAP2K4 mitogen-activated protein kinase kinase 4 15 2 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1304.[MT7]-LNFANPPFK[MT7].2b5_1.heavy 668.387 / 704.385 63881.0 33.317100524902344 41 11 10 10 10 1.150840710040099 67.01313947178106 0.0 3 0.8750500936084374 3.4543393883311087 63881.0 10.655050872397245 0.0 - - - - - - - 252.0 127 2 MAP2K4 mitogen-activated protein kinase kinase 4 17 3 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1406.[MT7]-FNILILYSTTRK[MT7].3y7_1.heavy 586.357 / 1012.59 42980.0 38.01219940185547 48 18 10 10 10 11.608233130738446 8.614575437428227 0.0 3 0.9833177940221074 9.541793773882514 42980.0 265.8547277262478 0.0 - - - - - - - 328.0 85 8 FBXO4 F-box protein 4 19 3 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1406.[MT7]-FNILILYSTTRK[MT7].3y6_1.heavy 586.357 / 899.507 48722.0 38.01219940185547 48 18 10 10 10 11.608233130738446 8.614575437428227 0.0 3 0.9833177940221074 9.541793773882514 48722.0 125.99242705418614 0.0 - - - - - - - 273.3333333333333 97 3 FBXO4 F-box protein 4 21 3 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1406.[MT7]-FNILILYSTTRK[MT7].3b4_1.heavy 586.357 / 632.389 55611.0 38.01219940185547 48 18 10 10 10 11.608233130738446 8.614575437428227 0.0 3 0.9833177940221074 9.541793773882514 55611.0 110.76161088591789 0.0 - - - - - - - 346.22222222222223 111 9 FBXO4 F-box protein 4 23 3 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1406.[MT7]-FNILILYSTTRK[MT7].3b3_1.heavy 586.357 / 519.305 65946.0 38.01219940185547 48 18 10 10 10 11.608233130738446 8.614575437428227 0.0 3 0.9833177940221074 9.541793773882514 65946.0 158.4824351224467 0.0 - - - - - - - 328.0 131 6 FBXO4 F-box protein 4 25 4 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1302.[MT7]-ESSTVFELK[MT7].2y4_1.heavy 664.371 / 680.41 16034.0 29.865699768066406 42 12 10 10 10 0.9937662612889478 59.009946953953154 0.0 3 0.8923380276740427 3.7269667138413145 16034.0 9.334783548058455 1.0 - - - - - - - 818.0 37 4 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 27 4 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1302.[MT7]-ESSTVFELK[MT7].2y8_1.heavy 664.371 / 1054.59 23233.0 29.865699768066406 42 12 10 10 10 0.9937662612889478 59.009946953953154 0.0 3 0.8923380276740427 3.7269667138413145 23233.0 20.447724757982492 0.0 - - - - - - - 327.0 46 3 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 29 4 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1302.[MT7]-ESSTVFELK[MT7].2y3_1.heavy 664.371 / 533.341 10144.0 29.865699768066406 42 12 10 10 10 0.9937662612889478 59.009946953953154 0.0 3 0.8923380276740427 3.7269667138413145 10144.0 9.896956223698636 0.0 - - - - - - - 327.0 20 2 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 31 4 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1302.[MT7]-ESSTVFELK[MT7].2b5_1.heavy 664.371 / 648.332 18324.0 29.865699768066406 42 12 10 10 10 0.9937662612889478 59.009946953953154 0.0 3 0.8923380276740427 3.7269667138413145 18324.0 19.058944745165235 0.0 - - - - - - - 327.0 36 4 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 33 5 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1300.[MT7]-NFAQLTVSGSR.2y8_1.heavy 662.36 / 847.463 15739.0 27.197900772094727 44 14 10 10 10 2.83139862669139 28.271158103833855 0.0 3 0.9309764857877101 4.670179420373215 15739.0 20.111292513653478 0.0 - - - - - - - 328.0 31 1 RFC4 replication factor C (activator 1) 4, 37kDa 35 5 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1300.[MT7]-NFAQLTVSGSR.2b4_1.heavy 662.36 / 605.316 18034.0 27.197900772094727 44 14 10 10 10 2.83139862669139 28.271158103833855 0.0 3 0.9309764857877101 4.670179420373215 18034.0 17.28922052210485 1.0 - - - - - - - 328.0 36 2 RFC4 replication factor C (activator 1) 4, 37kDa 37 5 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1300.[MT7]-NFAQLTVSGSR.2y10_1.heavy 662.36 / 1065.57 15083.0 27.197900772094727 44 14 10 10 10 2.83139862669139 28.271158103833855 0.0 3 0.9309764857877101 4.670179420373215 15083.0 52.19269817073171 0.0 - - - - - - - 328.0 30 6 RFC4 replication factor C (activator 1) 4, 37kDa 39 5 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1300.[MT7]-NFAQLTVSGSR.2y7_1.heavy 662.36 / 719.405 20985.0 27.197900772094727 44 14 10 10 10 2.83139862669139 28.271158103833855 0.0 3 0.9309764857877101 4.670179420373215 20985.0 31.228923979523508 0.0 - - - - - - - 843.4285714285714 41 7 RFC4 replication factor C (activator 1) 4, 37kDa 41 6 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1408.[MT7]-NIISLLNVFTPQK[MT7].3y3_1.heavy 592.36 / 516.326 179322.0 46.5968017578125 47 17 10 10 10 19.078135528296997 5.241602349017723 0.0 3 0.9724705763655396 7.4209998056685595 179322.0 156.25153930396567 0.0 - - - - - - - 235.0 358 3 MAPK9;MAPK10 mitogen-activated protein kinase 9;mitogen-activated protein kinase 10 43 6 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1408.[MT7]-NIISLLNVFTPQK[MT7].3b4_1.heavy 592.36 / 572.352 34972.0 46.5968017578125 47 17 10 10 10 19.078135528296997 5.241602349017723 0.0 3 0.9724705763655396 7.4209998056685595 34972.0 74.16280462655789 0.0 - - - - - - - 286.77777777777777 69 9 MAPK9;MAPK10 mitogen-activated protein kinase 9;mitogen-activated protein kinase 10 45 6 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1408.[MT7]-NIISLLNVFTPQK[MT7].3b5_1.heavy 592.36 / 685.437 53045.0 46.5968017578125 47 17 10 10 10 19.078135528296997 5.241602349017723 0.0 3 0.9724705763655396 7.4209998056685595 53045.0 214.02208471577083 0.0 - - - - - - - 251.28571428571428 106 7 MAPK9;MAPK10 mitogen-activated protein kinase 9;mitogen-activated protein kinase 10 47 6 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1408.[MT7]-NIISLLNVFTPQK[MT7].3y4_1.heavy 592.36 / 617.374 52928.0 46.5968017578125 47 17 10 10 10 19.078135528296997 5.241602349017723 0.0 3 0.9724705763655396 7.4209998056685595 52928.0 121.3135460535276 0.0 - - - - - - - 738.0 105 7 MAPK9;MAPK10 mitogen-activated protein kinase 9;mitogen-activated protein kinase 10 49 7 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1306.[MT7]-WLNYGGVIK[MT7].2b3_1.heavy 669.395 / 558.316 24487.0 33.73569869995117 46 16 10 10 10 7.475098833465159 13.377749542562768 0.0 3 0.9697399096268136 7.076621759472999 24487.0 33.523869047619044 1.0 - - - - - - - 450.0 48 8 PRIM1 primase, DNA, polypeptide 1 (49kDa) 51 7 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1306.[MT7]-WLNYGGVIK[MT7].2y8_1.heavy 669.395 / 1007.6 31689.0 33.73569869995117 46 16 10 10 10 7.475098833465159 13.377749542562768 0.0 3 0.9697399096268136 7.076621759472999 31689.0 94.4068125 0.0 - - - - - - - 377.14285714285717 63 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 53 7 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1306.[MT7]-WLNYGGVIK[MT7].2y5_1.heavy 669.395 / 617.41 44172.0 33.73569869995117 46 16 10 10 10 7.475098833465159 13.377749542562768 0.0 3 0.9697399096268136 7.076621759472999 44172.0 41.866423984727525 0.0 - - - - - - - 377.14285714285717 88 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 55 7 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1306.[MT7]-WLNYGGVIK[MT7].2y7_1.heavy 669.395 / 894.516 36010.0 33.73569869995117 46 16 10 10 10 7.475098833465159 13.377749542562768 0.0 3 0.9697399096268136 7.076621759472999 36010.0 60.50963095788986 0.0 - - - - - - - 377.14285714285717 72 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 57 8 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1305.[MT7]-QTGYLTIGGQR.2b4_1.heavy 669.368 / 594.3 15147.0 26.353599548339844 47 17 10 10 10 2.1078229611919514 36.979722642088234 0.0 3 0.9744683817694453 7.707167948656811 15147.0 20.773879210011813 0.0 - - - - - - - 316.0 30 5 MAP2K7 mitogen-activated protein kinase kinase 7 59 8 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1305.[MT7]-QTGYLTIGGQR.2y9_1.heavy 669.368 / 964.521 11045.0 26.353599548339844 47 17 10 10 10 2.1078229611919514 36.979722642088234 0.0 3 0.9744683817694453 7.707167948656811 11045.0 49.65973715621176 0.0 - - - - - - - 316.0 22 3 MAP2K7 mitogen-activated protein kinase kinase 7 61 8 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1305.[MT7]-QTGYLTIGGQR.2y10_1.heavy 669.368 / 1065.57 24299.0 26.353599548339844 47 17 10 10 10 2.1078229611919514 36.979722642088234 0.0 3 0.9744683817694453 7.707167948656811 24299.0 72.01129952456418 0.0 - - - - - - - 316.0 48 5 MAP2K7 mitogen-activated protein kinase kinase 7 63 8 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1305.[MT7]-QTGYLTIGGQR.2y7_1.heavy 669.368 / 744.436 9467.0 26.353599548339844 47 17 10 10 10 2.1078229611919514 36.979722642088234 0.0 3 0.9744683817694453 7.707167948656811 9467.0 20.254278922345485 0.0 - - - - - - - 316.0 18 3 MAP2K7 mitogen-activated protein kinase kinase 7 65 9 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 TPX_ECO57.AQTFTLVAK.2y7.peptide 489.78 / 779.47 749022.0 27.298099517822266 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 749022.0 506.42378137651815 0.0 - - - - - - - 2305.0 1498 1 67 9 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 TPX_ECO57.AQTFTLVAK.2y6.peptide 489.78 / 678.42 418893.0 27.298099517822266 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 418893.0 320.5352862923411 0.0 - - - - - - - 329.0 837 1 69 9 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 TPX_ECO57.AQTFTLVAK.2y5.peptide 489.78 / 531.35 302314.0 27.298099517822266 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 302314.0 248.27257366786375 0.0 - - - - - - - 988.0 604 1 71 10 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1429.[MT7]-VRVDLPDK[MT7]YPFK[MT7].4y4_1.heavy 478.037 / 698.399 25333.0 29.403099060058594 41 13 10 10 8 3.376998789304712 29.612092345638338 0.0 4 0.9168567517247683 4.2500385967219785 25333.0 108.73489178834006 0.0 - - - - - - - 333.0 50 2 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 73 10 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1429.[MT7]-VRVDLPDK[MT7]YPFK[MT7].4b7_1.heavy 478.037 / 939.538 9333.0 29.403099060058594 41 13 10 10 8 3.376998789304712 29.612092345638338 0.0 4 0.9168567517247683 4.2500385967219785 9333.0 27.999000000000002 0.0 - - - - - - - 333.0 18 2 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 75 10 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1429.[MT7]-VRVDLPDK[MT7]YPFK[MT7].4b4_1.heavy 478.037 / 614.374 67667.0 29.403099060058594 41 13 10 10 8 3.376998789304712 29.612092345638338 0.0 4 0.9168567517247683 4.2500385967219785 67667.0 234.80449000000002 1.0 - - - - - - - 333.0 153 3 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 77 10 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1429.[MT7]-VRVDLPDK[MT7]YPFK[MT7].4y3_1.heavy 478.037 / 535.336 191000.0 29.403099060058594 41 13 10 10 8 3.376998789304712 29.612092345638338 0.0 4 0.9168567517247683 4.2500385967219785 191000.0 257.5888384054865 0.0 - - - - - - - 333.0 382 3 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 79 11 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1425.[MT7]-VAVEYLDPSPEVQK[MT7].3b4_1.heavy 621.343 / 543.326 62284.0 30.430700302124023 50 20 10 10 10 8.467760870886405 11.80949740135163 0.0 3 0.9946027166118919 16.791103212847528 62284.0 34.005577091586844 0.0 - - - - - - - 319.0 124 3 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 81 11 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1425.[MT7]-VAVEYLDPSPEVQK[MT7].3b5_1.heavy 621.343 / 706.389 51424.0 30.430700302124023 50 20 10 10 10 8.467760870886405 11.80949740135163 0.0 3 0.9946027166118919 16.791103212847528 51424.0 43.38426812380865 0.0 - - - - - - - 319.0 102 3 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 83 11 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1425.[MT7]-VAVEYLDPSPEVQK[MT7].3b7_1.heavy 621.343 / 934.5 28427.0 30.430700302124023 50 20 10 10 10 8.467760870886405 11.80949740135163 0.0 3 0.9946027166118919 16.791103212847528 28427.0 42.98879385268478 1.0 - - - - - - - 319.0 69 4 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 85 11 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1425.[MT7]-VAVEYLDPSPEVQK[MT7].3y5_1.heavy 621.343 / 744.437 45675.0 30.430700302124023 50 20 10 10 10 8.467760870886405 11.80949740135163 0.0 3 0.9946027166118919 16.791103212847528 45675.0 163.68162839248436 0.0 - - - - - - - 319.0 91 2 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 87 12 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1424.[MT7]-EGIEYILLNFSFK[MT7].3y3_1.heavy 621.016 / 525.315 41282.0 47.87864971160889 39 13 10 6 10 2.461623667380331 40.623593819448594 0.036998748779296875 3 0.9129114947082426 4.151246733964671 41282.0 439.7953844806008 0.0 - - - - - - - 283.1666666666667 82 6 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 89 12 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1424.[MT7]-EGIEYILLNFSFK[MT7].3b6_1.heavy 621.016 / 849.447 36369.0 47.87864971160889 39 13 10 6 10 2.461623667380331 40.623593819448594 0.036998748779296875 3 0.9129114947082426 4.151246733964671 36369.0 120.73518367346938 0.0 - - - - - - - 251.77777777777777 72 9 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 91 12 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1424.[MT7]-EGIEYILLNFSFK[MT7].3b4_1.heavy 621.016 / 573.3 25033.0 47.87864971160889 39 13 10 6 10 2.461623667380331 40.623593819448594 0.036998748779296875 3 0.9129114947082426 4.151246733964671 25033.0 96.61141868442292 0.0 - - - - - - - 225.0 50 13 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 93 12 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1424.[MT7]-EGIEYILLNFSFK[MT7].3b5_1.heavy 621.016 / 736.363 45910.0 47.87864971160889 39 13 10 6 10 2.461623667380331 40.623593819448594 0.036998748779296875 3 0.9129114947082426 4.151246733964671 45910.0 132.64123370894148 0.0 - - - - - - - 299.0 91 6 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 95 13 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1423.[MT7]-DDRVLQNLLTIEER.3y6_1.heavy 620.01 / 760.42 41295.0 37.13005065917969 39 13 10 6 10 1.1739370248627439 55.62817200687136 0.034698486328125 3 0.9167696667934961 4.247782780306435 41295.0 118.41948529411764 0.0 - - - - - - - 612.0 82 10 CCND2 cyclin D2 97 13 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1423.[MT7]-DDRVLQNLLTIEER.3b7_1.heavy 620.01 / 985.518 15294.0 37.13005065917969 39 13 10 6 10 1.1739370248627439 55.62817200687136 0.034698486328125 3 0.9167696667934961 4.247782780306435 15294.0 125.95058823529413 0.0 - - - - - - - 207.77777777777777 30 9 CCND2 cyclin D2 99 13 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1423.[MT7]-DDRVLQNLLTIEER.3y5_1.heavy 620.01 / 647.336 65426.0 37.13005065917969 39 13 10 6 10 1.1739370248627439 55.62817200687136 0.034698486328125 3 0.9167696667934961 4.247782780306435 65426.0 123.15482352941177 0.0 - - - - - - - 680.0 130 8 CCND2 cyclin D2 101 13 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1423.[MT7]-DDRVLQNLLTIEER.3b8_2.heavy 620.01 / 549.805 50811.0 37.13005065917969 39 13 10 6 10 1.1739370248627439 55.62817200687136 0.034698486328125 3 0.9167696667934961 4.247782780306435 50811.0 82.19426470588235 0.0 - - - - - - - 595.0 101 8 CCND2 cyclin D2 103 14 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1420.[MT7]-NVTDEQEGFAEGFVR.2y4_1.heavy 921.443 / 478.277 11414.0 31.775400161743164 47 17 10 10 10 5.1122145701487245 19.56099428688315 0.0 3 0.9728923770726023 7.4787786899212 11414.0 27.112946579371858 0.0 - - - - - - - 293.0 22 5 JUN jun proto-oncogene 105 14 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1420.[MT7]-NVTDEQEGFAEGFVR.2y8_1.heavy 921.443 / 882.447 7317.0 31.775400161743164 47 17 10 10 10 5.1122145701487245 19.56099428688315 0.0 3 0.9728923770726023 7.4787786899212 7317.0 23.807114136223344 1.0 - - - - - - - 293.0 17 7 JUN jun proto-oncogene 107 14 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1420.[MT7]-NVTDEQEGFAEGFVR.2b5_1.heavy 921.443 / 703.338 9072.0 31.775400161743164 47 17 10 10 10 5.1122145701487245 19.56099428688315 0.0 3 0.9728923770726023 7.4787786899212 9072.0 5.223057216054654 1.0 - - - - - - - 293.0 18 4 JUN jun proto-oncogene 109 14 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1420.[MT7]-NVTDEQEGFAEGFVR.2b1_1.heavy 921.443 / 259.152 17852.0 31.775400161743164 47 17 10 10 10 5.1122145701487245 19.56099428688315 0.0 3 0.9728923770726023 7.4787786899212 17852.0 58.59117948717949 0.0 - - - - - - - 293.0 35 3 JUN jun proto-oncogene 111 15 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A608.[MT7]-AQQAC[CAM]IEAK[MT7].3b4_1.heavy 436.239 / 543.301 N/A N/A - - - - - - - - - 0.0 - - - - - - - STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 113 15 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A608.[MT7]-AQQAC[CAM]IEAK[MT7].3b5_1.heavy 436.239 / 703.331 N/A N/A - - - - - - - - - 0.0 - - - - - - - STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 115 15 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A608.[MT7]-AQQAC[CAM]IEAK[MT7].3b3_1.heavy 436.239 / 472.264 N/A N/A - - - - - - - - - 0.0 - - - - - - - STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 117 15 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A608.[MT7]-AQQAC[CAM]IEAK[MT7].3b7_2.heavy 436.239 / 473.233 N/A N/A - - - - - - - - - 0.0 - - - - - - - STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 119 16 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A607.[MT7]-DDQLLDDGK[MT7].3b4_1.heavy 436.229 / 616.306 3076.0 23.874300003051758 40 18 6 10 6 3.609391482191704 27.705501188604167 0.0 5 0.9809419674113368 8.925471781822791 3076.0 0.0 1.0 - - - - - - - 256.0 6 6 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 121 16 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A607.[MT7]-DDQLLDDGK[MT7].3y4_1.heavy 436.229 / 578.29 7433.0 23.874300003051758 40 18 6 10 6 3.609391482191704 27.705501188604167 0.0 5 0.9809419674113368 8.925471781822791 7433.0 20.241089057711463 2.0 - - - - - - - 256.0 33 7 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 123 16 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A607.[MT7]-DDQLLDDGK[MT7].3b3_1.heavy 436.229 / 503.222 10253.0 23.874300003051758 40 18 6 10 6 3.609391482191704 27.705501188604167 0.0 5 0.9809419674113368 8.925471781822791 10253.0 1.9996099463676256 0.0 - - - - - - - 586.1428571428571 20 7 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 125 16 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A607.[MT7]-DDQLLDDGK[MT7].3y5_1.heavy 436.229 / 691.374 769.0 23.874300003051758 40 18 6 10 6 3.609391482191704 27.705501188604167 0.0 5 0.9809419674113368 8.925471781822791 769.0 0.954054580896686 10.0 - - - - - - - 256.0 13 3 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 127 17 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A604.[MT7]-DVIVK[MT7].2b3_1.heavy 431.286 / 472.289 41891.0 21.40969944000244 34 20 0 6 8 9.453052157673362 10.578593911472986 0.036800384521484375 4 0.9961432487070867 19.86606598225981 41891.0 57.89170756866072 0.0 - - - - - - - 765.9090909090909 83 11 SAE1 SUMO1 activating enzyme subunit 1 129 17 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A604.[MT7]-DVIVK[MT7].2y4_1.heavy 431.286 / 602.436 54304.0 21.40969944000244 34 20 0 6 8 9.453052157673362 10.578593911472986 0.036800384521484375 4 0.9961432487070867 19.86606598225981 54304.0 143.21446277722185 0.0 - - - - - - - 332.5 108 8 SAE1 SUMO1 activating enzyme subunit 1 131 17 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A604.[MT7]-DVIVK[MT7].2b4_1.heavy 431.286 / 571.357 15294.0 21.40969944000244 34 20 0 6 8 9.453052157673362 10.578593911472986 0.036800384521484375 4 0.9961432487070867 19.86606598225981 15294.0 30.86398195488722 1.0 - - - - - - - 271.1111111111111 46 9 SAE1 SUMO1 activating enzyme subunit 1 133 17 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A604.[MT7]-DVIVK[MT7].2y3_1.heavy 431.286 / 503.367 51422.0 21.40969944000244 34 20 0 6 8 9.453052157673362 10.578593911472986 0.036800384521484375 4 0.9961432487070867 19.86606598225981 51422.0 111.6085399554801 1.0 - - - - - - - 1171.4285714285713 889 7 SAE1 SUMO1 activating enzyme subunit 1 135 18 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A606.[MT7]-AFPNK[MT7].2y4_1.heavy 432.763 / 649.379 39652.0 19.93415069580078 24 11 2 5 6 0.8463318529904443 76.114329199905 0.04109954833984375 6 0.8758735029056761 3.466027127855095 39652.0 83.36952935787232 0.0 - - - - - - - 420.0 79 5 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 137 18 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A606.[MT7]-AFPNK[MT7].2b4_1.heavy 432.763 / 574.311 2937.0 19.93415069580078 24 11 2 5 6 0.8463318529904443 76.114329199905 0.04109954833984375 6 0.8758735029056761 3.466027127855095 2937.0 8.884845904988932 1.0 - - - - - - - 300.0 7 7 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 139 18 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A606.[MT7]-AFPNK[MT7].2y3_1.heavy 432.763 / 502.311 83081.0 19.93415069580078 24 11 2 5 6 0.8463318529904443 76.114329199905 0.04109954833984375 6 0.8758735029056761 3.466027127855095 83081.0 170.62768197435366 0.0 - - - - - - - 350.0 166 3 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 141 18 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A606.[MT7]-AFPNK[MT7].2y1_1.heavy 432.763 / 291.215 18672.0 19.93415069580078 24 11 2 5 6 0.8463318529904443 76.114329199905 0.04109954833984375 6 0.8758735029056761 3.466027127855095 18672.0 2.5848178216712747 4.0 - - - - - - - 1678.0 386 1 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 143 19 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A601.[MT7]-ESSLK[MT7].2b3_1.heavy 426.257 / 448.216 6312.0 16.62380027770996 46 18 10 10 8 3.023026420386689 26.27701210120167 0.0 4 0.9826892009984287 9.366456410662432 6312.0 14.3894180661237 0.0 - - - - - - - 309.57142857142856 12 7 TAF1L;KIAA0802;MACF1;PAK6;TAF1;BUB3 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like;KIAA0802;microtubule-actin crosslinking factor 1;p21 protein (Cdc42/Rac)-activated kinase 6;TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa;budding uninhibited by benzimidazoles 3 homolog (yeast) 145 19 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A601.[MT7]-ESSLK[MT7].2y4_1.heavy 426.257 / 578.363 44183.0 16.62380027770996 46 18 10 10 8 3.023026420386689 26.27701210120167 0.0 4 0.9826892009984287 9.366456410662432 44183.0 32.74335937920276 0.0 - - - - - - - 394.0 88 4 TAF1L;KIAA0802;MACF1;PAK6;TAF1;BUB3 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like;KIAA0802;microtubule-actin crosslinking factor 1;p21 protein (Cdc42/Rac)-activated kinase 6;TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa;budding uninhibited by benzimidazoles 3 homolog (yeast) 147 19 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A601.[MT7]-ESSLK[MT7].2b4_1.heavy 426.257 / 561.3 1578.0 16.62380027770996 46 18 10 10 8 3.023026420386689 26.27701210120167 0.0 4 0.9826892009984287 9.366456410662432 1578.0 3.731756756756756 17.0 - - - - - - - 197.0 26 6 TAF1L;KIAA0802;MACF1;PAK6;TAF1;BUB3 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like;KIAA0802;microtubule-actin crosslinking factor 1;p21 protein (Cdc42/Rac)-activated kinase 6;TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa;budding uninhibited by benzimidazoles 3 homolog (yeast) 149 19 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A601.[MT7]-ESSLK[MT7].2y3_1.heavy 426.257 / 491.331 8679.0 16.62380027770996 46 18 10 10 8 3.023026420386689 26.27701210120167 0.0 4 0.9826892009984287 9.366456410662432 8679.0 22.392910321489 1.0 - - - - - - - 295.5 20 8 TAF1L;KIAA0802;MACF1;PAK6;TAF1;BUB3 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like;KIAA0802;microtubule-actin crosslinking factor 1;p21 protein (Cdc42/Rac)-activated kinase 6;TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa;budding uninhibited by benzimidazoles 3 homolog (yeast) 151 20 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1419.[MT7]-NVTDEQEGFAEGFVR.3y6_1.heavy 614.631 / 678.357 51905.0 31.775400161743164 50 20 10 10 10 6.227852723260679 16.056898652485092 0.0 3 0.9930590424578881 14.804752586012116 51905.0 50.97927370121519 0.0 - - - - - - - 293.0 103 2 JUN jun proto-oncogene 153 20 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1419.[MT7]-NVTDEQEGFAEGFVR.3b5_1.heavy 614.631 / 703.338 31377.0 31.775400161743164 50 20 10 10 10 6.227852723260679 16.056898652485092 0.0 3 0.9930590424578881 14.804752586012116 31377.0 32.02607468597239 0.0 - - - - - - - 293.0 62 5 JUN jun proto-oncogene 155 20 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1419.[MT7]-NVTDEQEGFAEGFVR.3y8_1.heavy 614.631 / 882.447 46040.0 31.775400161743164 50 20 10 10 10 6.227852723260679 16.056898652485092 0.0 3 0.9930590424578881 14.804752586012116 46040.0 67.1219547597199 0.0 - - - - - - - 293.0 92 4 JUN jun proto-oncogene 157 20 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1419.[MT7]-NVTDEQEGFAEGFVR.3y5_1.heavy 614.631 / 607.32 49559.0 31.775400161743164 50 20 10 10 10 6.227852723260679 16.056898652485092 0.0 3 0.9930590424578881 14.804752586012116 49559.0 39.99248634663677 0.0 - - - - - - - 782.0 99 3 JUN jun proto-oncogene 159 21 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1417.[MT7]-EHVEPVFGFPQFVR.3y7_1.heavy 611.325 / 850.457 54902.0 37.50520038604736 38 17 10 3 8 7.422580331061154 13.472403873021298 0.07040023803710938 4 0.9745879164904374 7.7253510572016735 54902.0 84.67164777702824 0.0 - - - - - - - 200.4 109 5 RNASEH2A ribonuclease H2, subunit A 161 21 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1417.[MT7]-EHVEPVFGFPQFVR.3b4_1.heavy 611.325 / 639.322 82770.0 37.50520038604736 38 17 10 3 8 7.422580331061154 13.472403873021298 0.07040023803710938 4 0.9745879164904374 7.7253510572016735 82770.0 161.90538922155687 1.0 - - - - - - - 584.125 185 8 RNASEH2A ribonuclease H2, subunit A 163 21 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1417.[MT7]-EHVEPVFGFPQFVR.3y8_1.heavy 611.325 / 997.525 45056.0 37.50520038604736 38 17 10 3 8 7.422580331061154 13.472403873021298 0.07040023803710938 4 0.9745879164904374 7.7253510572016735 45056.0 94.77224594094432 0.0 - - - - - - - 208.75 90 4 RNASEH2A ribonuclease H2, subunit A 165 21 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1417.[MT7]-EHVEPVFGFPQFVR.3y5_1.heavy 611.325 / 646.367 111806.0 37.50520038604736 38 17 10 3 8 7.422580331061154 13.472403873021298 0.07040023803710938 4 0.9745879164904374 7.7253510572016735 111806.0 166.55974826252276 0.0 - - - - - - - 200.4 223 5 RNASEH2A ribonuclease H2, subunit A 167 22 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1411.[MT7]-NAAGGC[CAM]EREPQSLTR.3y7_1.heavy 597.296 / 830.437 5746.0 17.947574615478516 37 12 10 5 10 1.2989248925071608 60.15973548832534 0.04949951171875 3 0.8929733439261482 3.7382181479809025 5746.0 8.861715335010098 0.0 - - - - - - - 205.0 11 3 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 169 22 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1411.[MT7]-NAAGGC[CAM]EREPQSLTR.3y13_2.heavy 597.296 / 730.849 11287.0 17.947574615478516 37 12 10 5 10 1.2989248925071608 60.15973548832534 0.04949951171875 3 0.8929733439261482 3.7382181479809025 11287.0 27.308640900123436 0.0 - - - - - - - 205.0 22 1 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 171 22 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1411.[MT7]-NAAGGC[CAM]EREPQSLTR.3y14_2.heavy 597.296 / 766.368 22984.0 17.947574615478516 37 12 10 5 10 1.2989248925071608 60.15973548832534 0.04949951171875 3 0.8929733439261482 3.7382181479809025 22984.0 55.66552299365947 0.0 - - - - - - - 256.25 45 4 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 173 22 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1411.[MT7]-NAAGGC[CAM]EREPQSLTR.3b5_1.heavy 597.296 / 515.269 2873.0 17.947574615478516 37 12 10 5 10 1.2989248925071608 60.15973548832534 0.04949951171875 3 0.8929733439261482 3.7382181479809025 2873.0 13.093463414634146 3.0 - - - - - - - 263.57142857142856 16 7 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 175 23 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A616.[MT7]-AFILK[MT7].2b3_1.heavy 440.299 / 476.299 40522.0 29.865699768066406 46 16 10 10 10 2.4827211894130152 31.755615473781056 0.0 3 0.9612429881951697 6.248481520004068 40522.0 174.72788990825688 0.0 - - - - - - - 327.0 81 4 ZNF197;MAD2L2;MAP3K5;MYO9B zinc finger protein 197;MAD2 mitotic arrest deficient-like 2 (yeast);mitogen-activated protein kinase kinase kinase 5;myosin IXB 177 23 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A616.[MT7]-AFILK[MT7].2y4_1.heavy 440.299 / 664.451 95422.0 29.865699768066406 46 16 10 10 10 2.4827211894130152 31.755615473781056 0.0 3 0.9612429881951697 6.248481520004068 95422.0 433.63025076452595 0.0 - - - - - - - 327.0 190 2 ZNF197;MAD2L2;MAP3K5;MYO9B zinc finger protein 197;MAD2 mitotic arrest deficient-like 2 (yeast);mitogen-activated protein kinase kinase kinase 5;myosin IXB 179 23 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A616.[MT7]-AFILK[MT7].2b4_1.heavy 440.299 / 589.383 10457.0 29.865699768066406 46 16 10 10 10 2.4827211894130152 31.755615473781056 0.0 3 0.9612429881951697 6.248481520004068 10457.0 61.07911314984709 0.0 - - - - - - - 327.0 20 4 ZNF197;MAD2L2;MAP3K5;MYO9B zinc finger protein 197;MAD2 mitotic arrest deficient-like 2 (yeast);mitogen-activated protein kinase kinase kinase 5;myosin IXB 181 23 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A616.[MT7]-AFILK[MT7].2y3_1.heavy 440.299 / 517.383 59149.0 29.865699768066406 46 16 10 10 10 2.4827211894130152 31.755615473781056 0.0 3 0.9612429881951697 6.248481520004068 59149.0 72.5526499213625 0.0 - - - - - - - 327.0 118 2 ZNF197;MAD2L2;MAP3K5;MYO9B zinc finger protein 197;MAD2 mitotic arrest deficient-like 2 (yeast);mitogen-activated protein kinase kinase kinase 5;myosin IXB 183 24 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A611.[MT7]-ELVHPDALNR.3y6_1.heavy 436.578 / 685.363 193318.0 23.023500442504883 48 18 10 10 10 2.880500620404899 24.140742763719537 0.0 3 0.9826546354570425 9.357091975388549 193318.0 159.9041461688518 0.0 - - - - - - - 383.0 386 5 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 185 24 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A611.[MT7]-ELVHPDALNR.3b3_1.heavy 436.578 / 486.304 357925.0 23.023500442504883 48 18 10 10 10 2.880500620404899 24.140742763719537 0.0 3 0.9826546354570425 9.357091975388549 357925.0 111.41862559297428 0.0 - - - - - - - 287.0 715 5 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 187 24 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A611.[MT7]-ELVHPDALNR.3y4_1.heavy 436.578 / 473.283 263659.0 23.023500442504883 48 18 10 10 10 2.880500620404899 24.140742763719537 0.0 3 0.9826546354570425 9.357091975388549 263659.0 164.56828550560272 0.0 - - - - - - - 307.57142857142856 527 7 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 189 24 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A611.[MT7]-ELVHPDALNR.3y5_1.heavy 436.578 / 588.31 237101.0 23.023500442504883 48 18 10 10 10 2.880500620404899 24.140742763719537 0.0 3 0.9826546354570425 9.357091975388549 237101.0 196.84429208233684 0.0 - - - - - - - 319.0 474 3 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 191 25 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1442.[MT7]-FYGPQGTPYEGGVWK[MT7].2b3_1.heavy 987.504 / 512.263 14818.0 32.43287658691406 34 9 10 5 10 0.6321866844194138 83.85929519900071 0.0493011474609375 3 0.810910174827642 2.792122579776782 14818.0 36.17829062893541 0.0 - - - - - - - 274.0 29 2 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 193 25 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1442.[MT7]-FYGPQGTPYEGGVWK[MT7].2y8_1.heavy 987.504 / 1079.56 37595.0 32.43287658691406 34 9 10 5 10 0.6321866844194138 83.85929519900071 0.0493011474609375 3 0.810910174827642 2.792122579776782 37595.0 95.66182532252388 0.0 - - - - - - - 274.0 75 4 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 195 25 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1442.[MT7]-FYGPQGTPYEGGVWK[MT7].2y5_1.heavy 987.504 / 690.406 9330.0 32.43287658691406 34 9 10 5 10 0.6321866844194138 83.85929519900071 0.0493011474609375 3 0.810910174827642 2.792122579776782 9330.0 49.99190718359858 0.0 - - - - - - - 274.0 18 7 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 197 25 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1442.[MT7]-FYGPQGTPYEGGVWK[MT7].2b5_1.heavy 987.504 / 737.374 9056.0 32.43287658691406 34 9 10 5 10 0.6321866844194138 83.85929519900071 0.0493011474609375 3 0.810910174827642 2.792122579776782 9056.0 61.475036496350356 0.0 - - - - - - - 274.0 18 8 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 199 26 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1443.[MT7]-SLYEDLEDHPNVQK[MT7].3y3_1.heavy 659.005 / 518.342 25000.0 29.041500091552734 50 20 10 10 10 8.926485342201701 11.202617398275498 0.0 3 0.9971307489352802 23.03425644935692 25000.0 17.51390491576275 0.0 - - - - - - - 333.0 50 3 VHL von Hippel-Lindau tumor suppressor 201 26 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1443.[MT7]-SLYEDLEDHPNVQK[MT7].3b5_1.heavy 659.005 / 752.358 49333.0 29.041500091552734 50 20 10 10 10 8.926485342201701 11.202617398275498 0.0 3 0.9971307489352802 23.03425644935692 49333.0 64.31565592050993 0.0 - - - - - - - 333.0 98 2 VHL von Hippel-Lindau tumor suppressor 203 26 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1443.[MT7]-SLYEDLEDHPNVQK[MT7].3y4_1.heavy 659.005 / 632.385 30667.0 29.041500091552734 50 20 10 10 10 8.926485342201701 11.202617398275498 0.0 3 0.9971307489352802 23.03425644935692 30667.0 31.030188077019254 0.0 - - - - - - - 333.0 61 3 VHL von Hippel-Lindau tumor suppressor 205 26 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1443.[MT7]-SLYEDLEDHPNVQK[MT7].3b8_1.heavy 659.005 / 1109.51 36333.0 29.041500091552734 50 20 10 10 10 8.926485342201701 11.202617398275498 0.0 3 0.9971307489352802 23.03425644935692 36333.0 139.98788486486487 0.0 - - - - - - - 333.0 72 3 VHL von Hippel-Lindau tumor suppressor 207 27 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1217.[MT7]-FLDGQAVLR.2b3_1.heavy 581.839 / 520.289 37648.0 31.5314998626709 41 11 10 10 10 0.8884625693656844 67.6638122445636 0.0 3 0.8621271414384795 3.284747943275417 37648.0 81.26381112984822 0.0 - - - - - - - 296.0 75 3 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 209 27 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1217.[MT7]-FLDGQAVLR.2y6_1.heavy 581.839 / 643.389 35869.0 31.5314998626709 41 11 10 10 10 0.8884625693656844 67.6638122445636 0.0 3 0.8621271414384795 3.284747943275417 35869.0 68.6531450252951 0.0 - - - - - - - 762.1428571428571 71 7 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 211 27 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1217.[MT7]-FLDGQAVLR.2b5_1.heavy 581.839 / 705.369 7707.0 31.5314998626709 41 11 10 10 10 0.8884625693656844 67.6638122445636 0.0 3 0.8621271414384795 3.284747943275417 7707.0 9.0473013087915 0.0 - - - - - - - 296.0 15 2 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 213 27 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1217.[MT7]-FLDGQAVLR.2y7_1.heavy 581.839 / 758.416 19862.0 31.5314998626709 41 11 10 10 10 0.8884625693656844 67.6638122445636 0.0 3 0.8621271414384795 3.284747943275417 19862.0 31.290240538098814 1.0 - - - - - - - 296.0 40 4 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 215 28 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1218.[MT7]-VQLC[CAM]DLK[MT7].2y4_1.heavy 582.338 / 679.357 43667.0 28.03350067138672 44 14 10 10 10 3.0625567051440856 27.357981677134568 0.0 3 0.9425271828186124 5.123052966897328 43667.0 76.51506580186118 0.0 - - - - - - - 333.0 87 4 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 217 28 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1218.[MT7]-VQLC[CAM]DLK[MT7].2y5_1.heavy 582.338 / 792.441 44333.0 28.03350067138672 44 14 10 10 10 3.0625567051440856 27.357981677134568 0.0 3 0.9425271828186124 5.123052966897328 44333.0 38.26686206451613 0.0 - - - - - - - 333.0 88 3 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 219 28 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1218.[MT7]-VQLC[CAM]DLK[MT7].2y6_1.heavy 582.338 / 920.499 40667.0 28.03350067138672 44 14 10 10 10 3.0625567051440856 27.357981677134568 0.0 3 0.9425271828186124 5.123052966897328 40667.0 93.91333349325338 0.0 - - - - - - - 333.0 81 3 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 221 28 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1218.[MT7]-VQLC[CAM]DLK[MT7].2b5_1.heavy 582.338 / 760.378 76000.0 28.03350067138672 44 14 10 10 10 3.0625567051440856 27.357981677134568 0.0 3 0.9425271828186124 5.123052966897328 76000.0 157.28240905803662 0.0 - - - - - - - 333.0 152 5 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 223 29 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 OPPA_ECOLI.LAIAASSLWK.2y7.peptide 530.31 / 762.41 2079910.0 34.22850036621094 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 2079910.0 1174.0198301921994 0.0 - - - - - - - 1481.0 4159 1 225 29 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 OPPA_ECOLI.LAIAASSLWK.2y8.peptide 530.31 / 875.5 1031510.0 34.22850036621094 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1031510.0 604.6169232359978 0.0 - - - - - - - 212.0 2063 1 227 29 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 OPPA_ECOLI.LAIAASSLWK.2y6.peptide 530.31 / 691.38 1565310.0 34.22850036621094 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1565310.0 95.12805645705744 0.0 - - - - - - - 1058.0 3130 1 229 30 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1447.[MT7]-LC[CAM]DFGISGQLVDSIAK[MT7].3b6_1.heavy 671.031 / 850.425 44553.0 38.68709945678711 41 11 10 10 10 1.6440894310960998 48.11139535953034 0.0 3 0.8696766407162774 3.3807865934090477 44553.0 68.70791848071974 0.0 - - - - - - - 1282.0 89 7 MAP2K4 mitogen-activated protein kinase kinase 4 231 30 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1447.[MT7]-LC[CAM]DFGISGQLVDSIAK[MT7].3b5_1.heavy 671.031 / 737.341 58335.0 38.68709945678711 41 11 10 10 10 1.6440894310960998 48.11139535953034 0.0 3 0.8696766407162774 3.3807865934090477 58335.0 70.22733758039433 0.0 - - - - - - - 819.1111111111111 116 9 MAP2K4 mitogen-activated protein kinase kinase 4 233 30 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1447.[MT7]-LC[CAM]DFGISGQLVDSIAK[MT7].3b3_1.heavy 671.031 / 533.251 19712.0 38.68709945678711 41 11 10 10 10 1.6440894310960998 48.11139535953034 0.0 3 0.8696766407162774 3.3807865934090477 19712.0 39.37478152309613 0.0 - - - - - - - 721.0 39 8 MAP2K4 mitogen-activated protein kinase kinase 4 235 30 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1447.[MT7]-LC[CAM]DFGISGQLVDSIAK[MT7].3y5_1.heavy 671.031 / 677.395 75163.0 38.68709945678711 41 11 10 10 10 1.6440894310960998 48.11139535953034 0.0 3 0.8696766407162774 3.3807865934090477 75163.0 160.64478939157567 0.0 - - - - - - - 1242.0 150 8 MAP2K4 mitogen-activated protein kinase kinase 4 237 31 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1445.[MT7]-RTTSDYFLLQVLLK[MT7].2b8_1.heavy 993.087 / 1128.58 N/A N/A - - - - - - - - - 0.0 - - - - - - - SAE1 SUMO1 activating enzyme subunit 1 239 31 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1445.[MT7]-RTTSDYFLLQVLLK[MT7].2b6_1.heavy 993.087 / 868.428 N/A N/A - - - - - - - - - 0.0 - - - - - - - SAE1 SUMO1 activating enzyme subunit 1 241 31 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1445.[MT7]-RTTSDYFLLQVLLK[MT7].2b7_1.heavy 993.087 / 1015.5 N/A N/A - - - - - - - - - 0.0 - - - - - - - SAE1 SUMO1 activating enzyme subunit 1 243 31 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1445.[MT7]-RTTSDYFLLQVLLK[MT7].2b5_1.heavy 993.087 / 705.365 N/A N/A - - - - - - - - - 0.0 - - - - - - - SAE1 SUMO1 activating enzyme subunit 1 245 32 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1347.[MT7]-DEEEAELELLR.2b3_1.heavy 745.379 / 518.221 24032.0 33.50410079956055 50 20 10 10 10 7.555718882473581 13.235008019152525 0.0 3 0.9943480489500287 16.40810439786905 24032.0 24.346984179710393 0.0 - - - - - - - 354.2857142857143 48 7 POLD4 polymerase (DNA-directed), delta 4 247 32 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1347.[MT7]-DEEEAELELLR.2y8_1.heavy 745.379 / 972.536 23785.0 33.50410079956055 50 20 10 10 10 7.555718882473581 13.235008019152525 0.0 3 0.9943480489500287 16.40810439786905 23785.0 52.75759348329235 0.0 - - - - - - - 372.0 47 4 POLD4 polymerase (DNA-directed), delta 4 249 32 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1347.[MT7]-DEEEAELELLR.2y9_1.heavy 745.379 / 1101.58 15113.0 33.50410079956055 50 20 10 10 10 7.555718882473581 13.235008019152525 0.0 3 0.9943480489500287 16.40810439786905 15113.0 55.75965725806451 0.0 - - - - - - - 372.0 30 6 POLD4 polymerase (DNA-directed), delta 4 251 32 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1347.[MT7]-DEEEAELELLR.2y10_1.heavy 745.379 / 1230.62 21307.0 33.50410079956055 50 20 10 10 10 7.555718882473581 13.235008019152525 0.0 3 0.9943480489500287 16.40810439786905 21307.0 96.23348238694057 0.0 - - - - - - - 413.3333333333333 42 6 POLD4 polymerase (DNA-directed), delta 4 253 33 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1211.[MT7]-EIGTSDFSR.2y8_1.heavy 578.292 / 882.432 64241.0 23.90272569656372 46 20 10 6 10 6.701909912407475 14.92111969676981 0.03790092468261719 3 0.9942495479338627 16.266834208780278 64241.0 317.85911458333334 0.0 - - - - - - - 256.0 128 1 CCNE2 cyclin E2 255 33 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1211.[MT7]-EIGTSDFSR.2b6_1.heavy 578.292 / 747.364 34808.0 23.90272569656372 46 20 10 6 10 6.701909912407475 14.92111969676981 0.03790092468261719 3 0.9942495479338627 16.266834208780278 34808.0 41.6503125 1.0 - - - - - - - 256.0 69 3 CCNE2 cyclin E2 257 33 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1211.[MT7]-EIGTSDFSR.2y6_1.heavy 578.292 / 712.326 8958.0 23.90272569656372 46 20 10 6 10 6.701909912407475 14.92111969676981 0.03790092468261719 3 0.9942495479338627 16.266834208780278 8958.0 14.813359374999997 3.0 - - - - - - - 256.0 41 6 CCNE2 cyclin E2 259 33 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1211.[MT7]-EIGTSDFSR.2y7_1.heavy 578.292 / 769.347 50420.0 23.90272569656372 46 20 10 6 10 6.701909912407475 14.92111969676981 0.03790092468261719 3 0.9942495479338627 16.266834208780278 50420.0 82.00349547683979 0.0 - - - - - - - 256.0 100 6 CCNE2 cyclin E2 261 34 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10518.[MT7]-TSSGLYIFR.2y8_1.heavy 594.331 / 942.504 19052.0 33.64289855957031 50 20 10 10 10 9.404112820670058 10.63364528977172 0.0 3 0.9982358277660758 29.378391252212317 19052.0 48.86461118690313 0.0 - - - - - - - 342.0 38 5 BRCA2 breast cancer 2, early onset 263 34 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10518.[MT7]-TSSGLYIFR.2b6_1.heavy 594.331 / 753.39 6839.0 33.64289855957031 50 20 10 10 10 9.404112820670058 10.63364528977172 0.0 3 0.9982358277660758 29.378391252212317 6839.0 11.57070198382009 0.0 - - - - - - - 391.0 13 5 BRCA2 breast cancer 2, early onset 265 34 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10518.[MT7]-TSSGLYIFR.2b5_1.heavy 594.331 / 590.327 10014.0 33.64289855957031 50 20 10 10 10 9.404112820670058 10.63364528977172 0.0 3 0.9982358277660758 29.378391252212317 10014.0 9.327267144319345 0.0 - - - - - - - 787.2222222222222 20 9 BRCA2 breast cancer 2, early onset 267 34 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10518.[MT7]-TSSGLYIFR.2y7_1.heavy 594.331 / 855.472 4397.0 33.64289855957031 50 20 10 10 10 9.404112820670058 10.63364528977172 0.0 3 0.9982358277660758 29.378391252212317 4397.0 22.337788618522573 0.0 - - - - - - - 288.54545454545456 8 11 BRCA2 breast cancer 2, early onset 269 35 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10515.[MT7]-YVEAQQK[MT7].3y3_1.heavy 385.22 / 547.332 45690.0 18.36680030822754 29 -1 10 10 10 0.21127606760936782 158.88377389893597 0.0 3 0.2566472540375557 1.3310477404873073 45690.0 208.4883495145631 0.0 - - - - - - - 288.4 91 10 BRCA2 breast cancer 2, early onset 271 35 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10515.[MT7]-YVEAQQK[MT7].3b4_1.heavy 385.22 / 607.321 3087.0 18.36680030822754 29 -1 10 10 10 0.21127606760936782 158.88377389893597 0.0 3 0.2566472540375557 1.3310477404873073 3087.0 4.555335978858696 3.0 - - - - - - - 294.2857142857143 46 7 BRCA2 breast cancer 2, early onset 273 35 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10515.[MT7]-YVEAQQK[MT7].3b3_1.heavy 385.22 / 536.284 8644.0 18.36680030822754 29 -1 10 10 10 0.21127606760936782 158.88377389893597 0.0 3 0.2566472540375557 1.3310477404873073 8644.0 46.1198518316593 0.0 - - - - - - - 274.6666666666667 17 6 BRCA2 breast cancer 2, early onset 275 35 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10515.[MT7]-YVEAQQK[MT7].3b2_1.heavy 385.22 / 407.241 5763.0 18.36680030822754 29 -1 10 10 10 0.21127606760936782 158.88377389893597 0.0 3 0.2566472540375557 1.3310477404873073 5763.0 16.329754449182545 0.0 - - - - - - - 320.44444444444446 11 9 BRCA2 breast cancer 2, early onset 277 36 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1344.[MT7]-VLQNLLTIEER.2y8_1.heavy 736.434 / 987.547 136202.0 38.94369888305664 46 16 10 10 10 2.4341781591029354 33.612006120428696 0.0 3 0.9632139786749156 6.414762169768057 136202.0 450.60998475201075 0.0 - - - - - - - 320.0 272 4 CCND2 cyclin D2 279 36 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1344.[MT7]-VLQNLLTIEER.2y9_1.heavy 736.434 / 1115.61 113502.0 38.94369888305664 46 16 10 10 10 2.4341781591029354 33.612006120428696 0.0 3 0.9632139786749156 6.414762169768057 113502.0 708.9770646989836 0.0 - - - - - - - 320.0 227 4 CCND2 cyclin D2 281 36 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1344.[MT7]-VLQNLLTIEER.2b4_1.heavy 736.434 / 599.363 77533.0 38.94369888305664 46 16 10 10 10 2.4341781591029354 33.612006120428696 0.0 3 0.9632139786749156 6.414762169768057 77533.0 189.98373084740464 0.0 - - - - - - - 799.0 155 7 CCND2 cyclin D2 283 36 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1344.[MT7]-VLQNLLTIEER.2y10_1.heavy 736.434 / 1228.69 133325.0 38.94369888305664 46 16 10 10 10 2.4341781591029354 33.612006120428696 0.0 3 0.9632139786749156 6.414762169768057 133325.0 476.534619601179 0.0 - - - - - - - 320.0 266 1 CCND2 cyclin D2 285 37 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1216.[MT7]-LADLEALK[MT7].2y4_1.heavy 580.86 / 604.379 57697.0 32.73820114135742 48 18 10 10 10 14.051624712574057 7.116614771992543 0.0 3 0.9899873065871615 12.323210645154992 57697.0 97.5751225529844 0.0 - - - - - - - 694.625 115 8 RNASEH2A ribonuclease H2, subunit A 287 37 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1216.[MT7]-LADLEALK[MT7].2y5_1.heavy 580.86 / 717.463 76753.0 32.73820114135742 48 18 10 10 10 14.051624712574057 7.116614771992543 0.0 3 0.9899873065871615 12.323210645154992 76753.0 115.97758885693693 0.0 - - - - - - - 265.0 153 3 RNASEH2A ribonuclease H2, subunit A 289 37 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1216.[MT7]-LADLEALK[MT7].2b5_1.heavy 580.86 / 686.384 46052.0 32.73820114135742 48 18 10 10 10 14.051624712574057 7.116614771992543 0.0 3 0.9899873065871615 12.323210645154992 46052.0 99.22840113156307 0.0 - - - - - - - 604.7142857142857 92 7 RNASEH2A ribonuclease H2, subunit A 291 37 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1216.[MT7]-LADLEALK[MT7].2y7_1.heavy 580.86 / 903.527 76753.0 32.73820114135742 48 18 10 10 10 14.051624712574057 7.116614771992543 0.0 3 0.9899873065871615 12.323210645154992 76753.0 183.30096623061564 0.0 - - - - - - - 676.2222222222222 153 9 RNASEH2A ribonuclease H2, subunit A 293 38 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1213.[MT7]-DSPPAGSPAGR.2y8_1.heavy 578.297 / 712.374 26379.0 15.338000297546387 45 15 10 10 10 1.8289830259104578 38.70098731755539 0.0 3 0.9578349891467945 5.988917403300396 26379.0 2.1453942220366273 0.0 - - - - - - - 170.0 52 2 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 295 38 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1213.[MT7]-DSPPAGSPAGR.2y9_1.heavy 578.297 / 809.426 33357.0 15.338000297546387 45 15 10 10 10 1.8289830259104578 38.70098731755539 0.0 3 0.9578349891467945 5.988917403300396 33357.0 64.33770696432192 0.0 - - - - - - - 272.0 66 5 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 297 38 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1213.[MT7]-DSPPAGSPAGR.2y6_1.heavy 578.297 / 544.284 7999.0 15.338000297546387 45 15 10 10 10 1.8289830259104578 38.70098731755539 0.0 3 0.9578349891467945 5.988917403300396 7999.0 0.5744242429356783 2.0 - - - - - - - 255.0 17 2 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 299 38 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1213.[MT7]-DSPPAGSPAGR.2y10_1.heavy 578.297 / 896.458 24507.0 15.338000297546387 45 15 10 10 10 1.8289830259104578 38.70098731755539 0.0 3 0.9578349891467945 5.988917403300396 24507.0 38.19545826768301 0.0 - - - - - - - 340.0 49 1 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 301 39 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1342.[MT7]-LFQLGPPSPVK[MT7].2b3_1.heavy 735.95 / 533.32 51587.0 34.52159881591797 45 15 10 10 10 2.569644180823956 31.16022202737633 0.0 3 0.9576507780910145 5.975784701341656 51587.0 80.53267264207759 0.0 - - - - - - - 298.0 103 9 PTTG2;PTTG1 pituitary tumor-transforming 2;pituitary tumor-transforming 1 303 39 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1342.[MT7]-LFQLGPPSPVK[MT7].2y5_1.heavy 735.95 / 671.421 10524.0 34.52159881591797 45 15 10 10 10 2.569644180823956 31.16022202737633 0.0 3 0.9576507780910145 5.975784701341656 10524.0 24.975373182552502 0.0 - - - - - - - 275.0 21 9 PTTG2;PTTG1 pituitary tumor-transforming 2;pituitary tumor-transforming 1 305 39 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1342.[MT7]-LFQLGPPSPVK[MT7].2y6_1.heavy 735.95 / 768.474 58397.0 34.52159881591797 45 15 10 10 10 2.569644180823956 31.16022202737633 0.0 3 0.9576507780910145 5.975784701341656 58397.0 80.61208147048879 0.0 - - - - - - - 677.8571428571429 116 7 PTTG2;PTTG1 pituitary tumor-transforming 2;pituitary tumor-transforming 1 307 39 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1342.[MT7]-LFQLGPPSPVK[MT7].2y7_1.heavy 735.95 / 825.495 57984.0 34.52159881591797 45 15 10 10 10 2.569644180823956 31.16022202737633 0.0 3 0.9576507780910145 5.975784701341656 57984.0 98.37665714443037 0.0 - - - - - - - 275.0 115 3 PTTG2;PTTG1 pituitary tumor-transforming 2;pituitary tumor-transforming 1 309 40 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1351.[MT7]-SGIVEYLSLVK[MT7].2y8_1.heavy 748.452 / 1094.66 12426.0 39.30544948577881 35 17 4 6 8 2.5882106816976664 30.935944904047282 0.030597686767578125 4 0.9710918952199483 7.241036740970769 12426.0 98.42113997000078 0.0 - - - - - - - 262.4117647058824 24 17 PRIM1 primase, DNA, polypeptide 1 (49kDa) 311 40 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1351.[MT7]-SGIVEYLSLVK[MT7].2b4_1.heavy 748.452 / 501.315 16408.0 39.30544948577881 35 17 4 6 8 2.5882106816976664 30.935944904047282 0.030597686767578125 4 0.9710918952199483 7.241036740970769 16408.0 32.22223121369565 0.0 - - - - - - - 1274.2857142857142 32 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 313 40 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1351.[MT7]-SGIVEYLSLVK[MT7].2b6_1.heavy 748.452 / 793.421 14337.0 39.30544948577881 35 17 4 6 8 2.5882106816976664 30.935944904047282 0.030597686767578125 4 0.9710918952199483 7.241036740970769 14337.0 29.141706398996234 1.0 - - - - - - - 341.35714285714283 63 14 PRIM1 primase, DNA, polypeptide 1 (49kDa) 315 40 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1351.[MT7]-SGIVEYLSLVK[MT7].2b5_1.heavy 748.452 / 630.358 14656.0 39.30544948577881 35 17 4 6 8 2.5882106816976664 30.935944904047282 0.030597686767578125 4 0.9710918952199483 7.241036740970769 14656.0 24.70222617326184 0.0 - - - - - - - 295.92857142857144 29 14 PRIM1 primase, DNA, polypeptide 1 (49kDa) 317 41 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1350.[MT7]-DNFPFDPPFVR.2b3_1.heavy 747.879 / 521.248 97557.0 38.86350059509277 41 15 10 6 10 1.2434240226310547 51.416996609653886 0.032398223876953125 3 0.9599887614010306 6.149114446342936 97557.0 64.43536902095856 0.0 - - - - - - - 480.0 195 1 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 319 41 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1350.[MT7]-DNFPFDPPFVR.2y8_1.heavy 747.879 / 974.509 36144.0 38.86350059509277 41 15 10 6 10 1.2434240226310547 51.416996609653886 0.032398223876953125 3 0.9599887614010306 6.149114446342936 36144.0 0.0 2.0 - - - - - - - 426.6666666666667 72 3 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 321 41 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1350.[MT7]-DNFPFDPPFVR.2y5_1.heavy 747.879 / 615.361 365919.0 38.86350059509277 41 15 10 6 10 1.2434240226310547 51.416996609653886 0.032398223876953125 3 0.9599887614010306 6.149114446342936 365919.0 169.0378822878737 0.0 - - - - - - - 3359.0 731 1 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 323 41 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1350.[MT7]-DNFPFDPPFVR.2b6_1.heavy 747.879 / 880.396 118828.0 38.86350059509277 41 15 10 6 10 1.2434240226310547 51.416996609653886 0.032398223876953125 3 0.9599887614010306 6.149114446342936 118828.0 60.62209529673643 0.0 - - - - - - - 320.0 237 1 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 325 42 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1543.[MT7]-VFPNEEDLTDLQVTIEGPEGTPYAGGLFR.4y8_1.heavy 827.917 / 880.468 9387.0 43.48534965515137 46 20 10 6 10 7.1159666455517705 14.052904542843882 0.038097381591796875 3 0.9959607815819903 19.411871519331328 9387.0 3.52962529544883 0.0 - - - - - - - 302.1 18 10 UBE2S ubiquitin-conjugating enzyme E2S 327 42 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1543.[MT7]-VFPNEEDLTDLQVTIEGPEGTPYAGGLFR.4b7_1.heavy 827.917 / 975.454 5250.0 43.48534965515137 46 20 10 6 10 7.1159666455517705 14.052904542843882 0.038097381591796875 3 0.9959607815819903 19.411871519331328 5250.0 16.34433962264151 0.0 - - - - - - - 231.27272727272728 10 11 UBE2S ubiquitin-conjugating enzyme E2S 329 42 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1543.[MT7]-VFPNEEDLTDLQVTIEGPEGTPYAGGLFR.4y7_1.heavy 827.917 / 783.415 3182.0 43.48534965515137 46 20 10 6 10 7.1159666455517705 14.052904542843882 0.038097381591796875 3 0.9959607815819903 19.411871519331328 3182.0 2.066522346368715 0.0 - - - - - - - 298.125 6 8 UBE2S ubiquitin-conjugating enzyme E2S 331 42 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1543.[MT7]-VFPNEEDLTDLQVTIEGPEGTPYAGGLFR.4y6_1.heavy 827.917 / 620.352 4296.0 43.48534965515137 46 20 10 6 10 7.1159666455517705 14.052904542843882 0.038097381591796875 3 0.9959607815819903 19.411871519331328 4296.0 2.970207416719045 0.0 - - - - - - - 302.1 8 10 UBE2S ubiquitin-conjugating enzyme E2S 333 43 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1542.[MT7]-VFPNEEDLTDLQVTIEGPEGTPYAGGLFR.3b2_1.heavy 1103.55 / 391.246 8839.0 43.46615028381348 41 18 10 3 10 5.62677976706292 17.772154614147667 0.0767974853515625 3 0.9851846763397899 10.12672814005021 8839.0 38.66749349573407 0.0 - - - - - - - 303.44444444444446 17 9 UBE2S ubiquitin-conjugating enzyme E2S 335 43 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1542.[MT7]-VFPNEEDLTDLQVTIEGPEGTPYAGGLFR.3y8_1.heavy 1103.55 / 880.468 20732.0 43.46615028381348 41 18 10 3 10 5.62677976706292 17.772154614147667 0.0767974853515625 3 0.9851846763397899 10.12672814005021 20732.0 29.509348941360194 0.0 - - - - - - - 321.3333333333333 41 6 UBE2S ubiquitin-conjugating enzyme E2S 337 43 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1542.[MT7]-VFPNEEDLTDLQVTIEGPEGTPYAGGLFR.3b7_1.heavy 1103.55 / 975.454 17036.0 43.46615028381348 41 18 10 3 10 5.62677976706292 17.772154614147667 0.0767974853515625 3 0.9851846763397899 10.12672814005021 17036.0 40.9215873121254 0.0 - - - - - - - 344.2857142857143 34 7 UBE2S ubiquitin-conjugating enzyme E2S 339 43 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1542.[MT7]-VFPNEEDLTDLQVTIEGPEGTPYAGGLFR.3y10_1.heavy 1103.55 / 1038.54 6589.0 43.46615028381348 41 18 10 3 10 5.62677976706292 17.772154614147667 0.0767974853515625 3 0.9851846763397899 10.12672814005021 6589.0 0.0 2.0 - - - - - - - 221.0 13 8 UBE2S ubiquitin-conjugating enzyme E2S 341 44 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1540.[MT7]-LC[CAM]IYTDNSIK[MT7]PQELLEWELVVLGK[MT7].4y4_1.heavy 823.961 / 560.389 69084.0 45.54779815673828 44 14 10 10 10 2.8167509865978255 31.90601342231546 0.0 3 0.9311402529541875 4.675795071255825 69084.0 49.94511973729979 0.0 - - - - - - - 280.0 138 1 CCND2 cyclin D2 343 44 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1540.[MT7]-LC[CAM]IYTDNSIK[MT7]PQELLEWELVVLGK[MT7].4b16_2.heavy 823.961 / 1103.59 36574.0 45.54779815673828 44 14 10 10 10 2.8167509865978255 31.90601342231546 0.0 3 0.9311402529541875 4.675795071255825 36574.0 38.96645805639048 0.0 - - - - - - - 220.0 73 7 CCND2 cyclin D2 345 44 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1540.[MT7]-LC[CAM]IYTDNSIK[MT7]PQELLEWELVVLGK[MT7].4b14_2.heavy 823.961 / 982.524 35593.0 45.54779815673828 44 14 10 10 10 2.8167509865978255 31.90601342231546 0.0 3 0.9311402529541875 4.675795071255825 35593.0 63.856882407062166 0.0 - - - - - - - 666.0 71 8 CCND2 cyclin D2 347 44 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1540.[MT7]-LC[CAM]IYTDNSIK[MT7]PQELLEWELVVLGK[MT7].4b3_1.heavy 823.961 / 531.308 13172.0 45.54779815673828 44 14 10 10 10 2.8167509865978255 31.90601342231546 0.0 3 0.9311402529541875 4.675795071255825 13172.0 53.94247619047619 0.0 - - - - - - - 236.92307692307693 26 13 CCND2 cyclin D2 349 45 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1450.[MT7]-VFC[CAM]ELFPEVVEEIK[MT7].4y4_1.heavy 507.276 / 662.384 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 351 45 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1450.[MT7]-VFC[CAM]ELFPEVVEEIK[MT7].4b4_1.heavy 507.276 / 680.319 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 353 45 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1450.[MT7]-VFC[CAM]ELFPEVVEEIK[MT7].4b5_1.heavy 507.276 / 793.404 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 355 45 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1450.[MT7]-VFC[CAM]ELFPEVVEEIK[MT7].4b3_1.heavy 507.276 / 551.277 N/A N/A - - - - - - - - - 0.0 - - - - - - - UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 357 46 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1547.[MT7]-LGFFPDPRPFPLPLSSLFSDGGNVGC[CAM]VDVIIQR.4b11_2.heavy 940.997 / 708.383 6986.0 48.30132579803467 44 18 10 6 10 9.788054026795448 10.216535352813068 0.038303375244140625 3 0.9861330630106185 10.468126369595444 6986.0 2.3369543147208125 1.0 - - - - - - - 767.8571428571429 13 7 BRCA2 breast cancer 2, early onset 359 46 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1547.[MT7]-LGFFPDPRPFPLPLSSLFSDGGNVGC[CAM]VDVIIQR.4y9_1.heavy 940.997 / 1059.56 26243.0 48.30132579803467 44 18 10 6 10 9.788054026795448 10.216535352813068 0.038303375244140625 3 0.9861330630106185 10.468126369595444 26243.0 84.28991113420813 0.0 - - - - - - - 716.5 52 8 BRCA2 breast cancer 2, early onset 361 46 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1547.[MT7]-LGFFPDPRPFPLPLSSLFSDGGNVGC[CAM]VDVIIQR.4b4_1.heavy 940.997 / 609.352 11464.0 48.30132579803467 44 18 10 6 10 9.788054026795448 10.216535352813068 0.038303375244140625 3 0.9861330630106185 10.468126369595444 11464.0 37.965603247960665 0.0 - - - - - - - 268.8181818181818 22 11 BRCA2 breast cancer 2, early onset 363 46 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1547.[MT7]-LGFFPDPRPFPLPLSSLFSDGGNVGC[CAM]VDVIIQR.4b6_1.heavy 940.997 / 821.431 32602.0 48.30132579803467 44 18 10 6 10 9.788054026795448 10.216535352813068 0.038303375244140625 3 0.9861330630106185 10.468126369595444 32602.0 77.28477576823848 0.0 - - - - - - - 179.2 65 5 BRCA2 breast cancer 2, early onset 365 47 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1430.[MT7]-VRVDLPDK[MT7]YPFK[MT7].3y3_1.heavy 637.047 / 535.336 31000.0 29.403099060058594 46 16 10 10 10 3.123973376560727 25.488101914079053 0.0 3 0.968263525304835 6.9091990526713065 31000.0 29.636 0.0 - - - - - - - 333.0 62 3 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 367 47 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1430.[MT7]-VRVDLPDK[MT7]YPFK[MT7].3b4_1.heavy 637.047 / 614.374 18333.0 29.403099060058594 46 16 10 10 10 3.123973376560727 25.488101914079053 0.0 3 0.968263525304835 6.9091990526713065 18333.0 32.57304406851692 0.0 - - - - - - - 333.0 36 6 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 369 47 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1430.[MT7]-VRVDLPDK[MT7]YPFK[MT7].3b7_1.heavy 637.047 / 939.538 27000.0 29.403099060058594 46 16 10 10 10 3.123973376560727 25.488101914079053 0.0 3 0.968263525304835 6.9091990526713065 27000.0 117.91401596499048 0.0 - - - - - - - 333.0 54 4 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 371 47 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1430.[MT7]-VRVDLPDK[MT7]YPFK[MT7].3b8_2.heavy 637.047 / 606.371 18000.0 29.403099060058594 46 16 10 10 10 3.123973376560727 25.488101914079053 0.0 3 0.968263525304835 6.9091990526713065 18000.0 26.81794841031794 0.0 - - - - - - - 1166.5 36 8 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 373 48 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10501.[MT7]-ALDFLSR.2y4_1.heavy 483.28 / 522.304 20374.0 33.64289855957031 48 18 10 10 10 3.2138388088939767 31.115437315418564 0.0 3 0.9837179526853236 9.658658914347392 20374.0 95.17577039777214 0.0 - - - - - - - 368.0 40 4 BRCA2 breast cancer 2, early onset 375 48 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10501.[MT7]-ALDFLSR.2y5_1.heavy 483.28 / 637.33 11046.0 33.64289855957031 48 18 10 10 10 3.2138388088939767 31.115437315418564 0.0 3 0.9837179526853236 9.658658914347392 11046.0 56.789010093167704 0.0 - - - - - - - 350.42857142857144 22 7 BRCA2 breast cancer 2, early onset 377 48 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10501.[MT7]-ALDFLSR.2b4_1.heavy 483.28 / 591.326 8101.0 33.64289855957031 48 18 10 10 10 3.2138388088939767 31.115437315418564 0.0 3 0.9837179526853236 9.658658914347392 8101.0 39.0002255289081 0.0 - - - - - - - 245.0 16 5 BRCA2 breast cancer 2, early onset 379 48 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10501.[MT7]-ALDFLSR.2y6_1.heavy 483.28 / 750.414 12028.0 33.64289855957031 48 18 10 10 10 3.2138388088939767 31.115437315418564 0.0 3 0.9837179526853236 9.658658914347392 12028.0 55.462740905057665 0.0 - - - - - - - 368.0 24 6 BRCA2 breast cancer 2, early onset 381 49 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1229.[MT7]-EDGGAEFSAR.2y8_1.heavy 591.779 / 794.379 31806.0 20.17899990081787 43 18 10 5 10 5.94284434220537 16.82695932145016 0.04120063781738281 3 0.9868249053843533 10.740080088081665 31806.0 35.00582172493347 0.0 - - - - - - - 263.5 63 4 CCNE1 cyclin E1 383 49 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1229.[MT7]-EDGGAEFSAR.2y9_1.heavy 591.779 / 909.406 29489.0 20.17899990081787 43 18 10 5 10 5.94284434220537 16.82695932145016 0.04120063781738281 3 0.9868249053843533 10.740080088081665 29489.0 28.00854816824966 0.0 - - - - - - - 1216.7777777777778 58 9 CCNE1 cyclin E1 385 49 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1229.[MT7]-EDGGAEFSAR.2b6_1.heavy 591.779 / 703.302 16219.0 20.17899990081787 43 18 10 5 10 5.94284434220537 16.82695932145016 0.04120063781738281 3 0.9868249053843533 10.740080088081665 16219.0 11.293658564439156 1.0 - - - - - - - 1233.7142857142858 32 7 CCNE1 cyclin E1 387 49 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1229.[MT7]-EDGGAEFSAR.2b5_1.heavy 591.779 / 574.259 10953.0 20.17899990081787 43 18 10 5 10 5.94284434220537 16.82695932145016 0.04120063781738281 3 0.9868249053843533 10.740080088081665 10953.0 17.997845720335455 0.0 - - - - - - - 692.2857142857143 21 7 CCNE1 cyclin E1 389 50 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1431.[MT7]-YLIGAAPIAYGLPVSLR.3y7_1.heavy 640.048 / 741.462 61480.0 41.9610013961792 43 17 10 6 10 5.242231817848158 19.07584469262334 0.035198211669921875 3 0.9769340882546789 8.110333648305494 61480.0 119.79692844995537 0.0 - - - - - - - 542.75 122 8 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 391 50 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1431.[MT7]-YLIGAAPIAYGLPVSLR.3b6_1.heavy 640.048 / 733.437 91552.0 41.9610013961792 43 17 10 6 10 5.242231817848158 19.07584469262334 0.035198211669921875 3 0.9769340882546789 8.110333648305494 91552.0 133.87690368780233 0.0 - - - - - - - 267.2 183 5 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 393 50 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1431.[MT7]-YLIGAAPIAYGLPVSLR.3b5_1.heavy 640.048 / 662.399 58640.0 41.9610013961792 43 17 10 6 10 5.242231817848158 19.07584469262334 0.035198211669921875 3 0.9769340882546789 8.110333648305494 58640.0 84.21002243829469 0.0 - - - - - - - 241.22222222222223 117 9 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 395 50 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1431.[MT7]-YLIGAAPIAYGLPVSLR.3y5_1.heavy 640.048 / 571.356 91051.0 41.9610013961792 43 17 10 6 10 5.242231817848158 19.07584469262334 0.035198211669921875 3 0.9769340882546789 8.110333648305494 91051.0 227.2543560113815 0.0 - - - - - - - 306.1666666666667 182 6 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 397 51 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1432.[MT7]-IHGGGINTLDIEPVEGR.3y7_1.heavy 641.013 / 799.431 76578.0 29.45549964904785 47 17 10 10 10 2.34915432733674 33.15104372540668 0.0 3 0.9764808973609854 8.031508386843624 76578.0 126.87823310528951 0.0 - - - - - - - 333.0 153 2 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 399 51 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1432.[MT7]-IHGGGINTLDIEPVEGR.3b5_1.heavy 641.013 / 566.317 82238.0 29.45549964904785 47 17 10 10 10 2.34915432733674 33.15104372540668 0.0 3 0.9764808973609854 8.031508386843624 82238.0 272.48026026026025 0.0 - - - - - - - 333.0 164 5 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 401 51 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1432.[MT7]-IHGGGINTLDIEPVEGR.3y8_1.heavy 641.013 / 914.458 160813.0 29.45549964904785 47 17 10 10 10 2.34915432733674 33.15104372540668 0.0 3 0.9764808973609854 8.031508386843624 160813.0 139.3892411457394 0.0 - - - - - - - 333.0 321 7 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 403 51 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1432.[MT7]-IHGGGINTLDIEPVEGR.3y5_1.heavy 641.013 / 557.304 298320.0 29.45549964904785 47 17 10 10 10 2.34915432733674 33.15104372540668 0.0 3 0.9764808973609854 8.031508386843624 298320.0 170.35299353235092 0.0 - - - - - - - 333.0 596 1 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 405 52 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1338.[MT7]-LSDPIVNTLAK[MT7].2y8_1.heavy 729.942 / 999.632 45486.0 31.99155044555664 40 15 10 5 10 2.929982705849719 34.12989428243031 0.04830169677734375 3 0.9540148472938499 5.732909470775926 45486.0 238.01386209700115 0.0 - - - - - - - 283.0 90 3 SKP2 S-phase kinase-associated protein 2 (p45) 407 52 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1338.[MT7]-LSDPIVNTLAK[MT7].2y5_1.heavy 729.942 / 690.427 8193.0 31.99155044555664 40 15 10 5 10 2.929982705849719 34.12989428243031 0.04830169677734375 3 0.9540148472938499 5.732909470775926 8193.0 40.6993212420651 0.0 - - - - - - - 283.0 16 4 SKP2 S-phase kinase-associated protein 2 (p45) 409 52 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1338.[MT7]-LSDPIVNTLAK[MT7].2y6_1.heavy 729.942 / 789.495 7911.0 31.99155044555664 40 15 10 5 10 2.929982705849719 34.12989428243031 0.04830169677734375 3 0.9540148472938499 5.732909470775926 7911.0 35.23200955063671 0.0 - - - - - - - 283.0 15 5 SKP2 S-phase kinase-associated protein 2 (p45) 411 52 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1338.[MT7]-LSDPIVNTLAK[MT7].2b5_1.heavy 729.942 / 670.389 6781.0 31.99155044555664 40 15 10 5 10 2.929982705849719 34.12989428243031 0.04830169677734375 3 0.9540148472938499 5.732909470775926 6781.0 34.28350104756247 0.0 - - - - - - - 283.0 13 4 SKP2 S-phase kinase-associated protein 2 (p45) 413 53 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1433.[MT7]-EGNVPNIIIAGPPGTGK[MT7].3y7_1.heavy 641.37 / 757.432 67759.0 30.937299728393555 46 16 10 10 10 2.2675995405564144 35.30730354398837 0.0 3 0.9694371812816946 7.041307508906722 67759.0 131.2797389706215 0.0 - - - - - - - 311.0 135 4 RFC2 replication factor C (activator 1) 2, 40kDa 415 53 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1433.[MT7]-EGNVPNIIIAGPPGTGK[MT7].3b6_1.heavy 641.37 / 755.38 59988.0 30.937299728393555 46 16 10 10 10 2.2675995405564144 35.30730354398837 0.0 3 0.9694371812816946 7.041307508906722 59988.0 110.39787986641745 0.0 - - - - - - - 311.0 119 3 RFC2 replication factor C (activator 1) 2, 40kDa 417 53 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1433.[MT7]-EGNVPNIIIAGPPGTGK[MT7].3b4_1.heavy 641.37 / 544.285 71178.0 30.937299728393555 46 16 10 10 10 2.2675995405564144 35.30730354398837 0.0 3 0.9694371812816946 7.041307508906722 71178.0 93.84435169172568 0.0 - - - - - - - 311.0 142 1 RFC2 replication factor C (activator 1) 2, 40kDa 419 53 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1433.[MT7]-EGNVPNIIIAGPPGTGK[MT7].3y5_1.heavy 641.37 / 603.358 46312.0 30.937299728393555 46 16 10 10 10 2.2675995405564144 35.30730354398837 0.0 3 0.9694371812816946 7.041307508906722 46312.0 38.39370703688593 0.0 - - - - - - - 311.0 92 2 RFC2 replication factor C (activator 1) 2, 40kDa 421 54 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1434.[MT7]-ADALYPVVSAASIC[CAM]AK[MT7].3y3_1.heavy 642.02 / 522.283 65244.0 33.64289855957031 44 14 10 10 10 1.8107527355014663 44.021177045416835 0.0 3 0.9440274375624103 5.191919457680522 65244.0 56.09840056371888 0.0 - - - - - - - 427.4 130 5 RNASEH2A ribonuclease H2, subunit A 423 54 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1434.[MT7]-ADALYPVVSAASIC[CAM]AK[MT7].3b4_1.heavy 642.02 / 515.295 47688.0 33.64289855957031 44 14 10 10 10 1.8107527355014663 44.021177045416835 0.0 3 0.9440274375624103 5.191919457680522 47688.0 29.984072509182184 1.0 - - - - - - - 1356.0 122 7 RNASEH2A ribonuclease H2, subunit A 425 54 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1434.[MT7]-ADALYPVVSAASIC[CAM]AK[MT7].3b5_1.heavy 642.02 / 678.358 88021.0 33.64289855957031 44 14 10 10 10 1.8107527355014663 44.021177045416835 0.0 3 0.9440274375624103 5.191919457680522 88021.0 148.32306225680935 0.0 - - - - - - - 395.6666666666667 176 6 RNASEH2A ribonuclease H2, subunit A 427 54 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1434.[MT7]-ADALYPVVSAASIC[CAM]AK[MT7].3y5_1.heavy 642.02 / 722.399 44129.0 33.64289855957031 44 14 10 10 10 1.8107527355014663 44.021177045416835 0.0 3 0.9440274375624103 5.191919457680522 44129.0 100.73046013840707 0.0 - - - - - - - 817.3333333333334 88 9 RNASEH2A ribonuclease H2, subunit A 429 55 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1436.[MT7]-FTLWGLETIPGPDAK[MT7].3y6_1.heavy 645.027 / 728.406 603651.0 41.555999755859375 41 11 10 10 10 1.5398511076912147 50.29709786042592 0.0 3 0.8724259868172275 3.4178441400785515 603651.0 317.127165014542 0.0 - - - - - - - 497.0 1207 2 RNASEH2C ribonuclease H2, subunit C 431 55 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1436.[MT7]-FTLWGLETIPGPDAK[MT7].3b5_1.heavy 645.027 / 749.41 260541.0 41.555999755859375 41 11 10 10 10 1.5398511076912147 50.29709786042592 0.0 3 0.8724259868172275 3.4178441400785515 260541.0 247.74942136383893 0.0 - - - - - - - 303.8333333333333 521 6 RNASEH2C ribonuclease H2, subunit C 433 55 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1436.[MT7]-FTLWGLETIPGPDAK[MT7].3b3_1.heavy 645.027 / 506.31 110643.0 41.555999755859375 41 11 10 10 10 1.5398511076912147 50.29709786042592 0.0 3 0.8724259868172275 3.4178441400785515 110643.0 157.78315140845072 0.0 - - - - - - - 207.25 221 4 RNASEH2C ribonuclease H2, subunit C 435 55 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1436.[MT7]-FTLWGLETIPGPDAK[MT7].3y5_1.heavy 645.027 / 631.353 143770.0 41.555999755859375 41 11 10 10 10 1.5398511076912147 50.29709786042592 0.0 3 0.8724259868172275 3.4178441400785515 143770.0 150.8449664784741 0.0 - - - - - - - 331.3333333333333 287 6 RNASEH2C ribonuclease H2, subunit C 437 56 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1220.[MT7]-LC[CAM]DFGISGR.2b3_1.heavy 584.799 / 533.251 51486.0 30.225900650024414 47 17 10 10 10 2.6266291200437344 26.3955578268447 0.0 3 0.9789324115183727 8.487690461899648 51486.0 96.17439397573422 0.0 - - - - - - - 322.0 102 3 MAP2K7 mitogen-activated protein kinase kinase 7 439 56 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1220.[MT7]-LC[CAM]DFGISGR.2y8_1.heavy 584.799 / 911.404 49555.0 30.225900650024414 47 17 10 10 10 2.6266291200437344 26.3955578268447 0.0 3 0.9789324115183727 8.487690461899648 49555.0 91.98336120401336 0.0 - - - - - - - 322.0 99 4 MAP2K7 mitogen-activated protein kinase kinase 7 441 56 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1220.[MT7]-LC[CAM]DFGISGR.2y6_1.heavy 584.799 / 636.346 45050.0 30.225900650024414 47 17 10 10 10 2.6266291200437344 26.3955578268447 0.0 3 0.9789324115183727 8.487690461899648 45050.0 57.4063714063714 0.0 - - - - - - - 322.0 90 1 MAP2K7 mitogen-activated protein kinase kinase 7 443 56 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1220.[MT7]-LC[CAM]DFGISGR.2y7_1.heavy 584.799 / 751.373 17055.0 30.225900650024414 47 17 10 10 10 2.6266291200437344 26.3955578268447 0.0 3 0.9789324115183727 8.487690461899648 17055.0 29.11388492336679 0.0 - - - - - - - 322.0 34 3 MAP2K7 mitogen-activated protein kinase kinase 7 445 57 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1437.[MT7]-SVNSREPSQVIFC[CAM]NR.3b9_2.heavy 646.331 / 565.289 19971.0 25.556699752807617 45 15 10 10 10 2.539505388806037 31.53448298330177 0.0 3 0.955570733844501 5.833196290241074 19971.0 14.764552529182879 0.0 - - - - - - - 294.0 39 1 VHL von Hippel-Lindau tumor suppressor 447 57 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1437.[MT7]-SVNSREPSQVIFC[CAM]NR.3y4_1.heavy 646.331 / 596.261 18796.0 25.556699752807617 45 15 10 10 10 2.539505388806037 31.53448298330177 0.0 3 0.955570733844501 5.833196290241074 18796.0 13.166848745968563 0.0 - - - - - - - 294.0 37 4 VHL von Hippel-Lindau tumor suppressor 449 57 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1437.[MT7]-SVNSREPSQVIFC[CAM]NR.3y5_1.heavy 646.331 / 709.345 16153.0 25.556699752807617 45 15 10 10 10 2.539505388806037 31.53448298330177 0.0 3 0.955570733844501 5.833196290241074 16153.0 64.62577297076868 0.0 - - - - - - - 294.0 32 7 VHL von Hippel-Lindau tumor suppressor 451 57 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1437.[MT7]-SVNSREPSQVIFC[CAM]NR.3y9_1.heavy 646.331 / 1120.56 11160.0 25.556699752807617 45 15 10 10 10 2.539505388806037 31.53448298330177 0.0 3 0.955570733844501 5.833196290241074 11160.0 55.83039321350346 0.0 - - - - - - - 294.0 22 4 VHL von Hippel-Lindau tumor suppressor 453 58 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1221.[MT7]-VGHFDPVTR.3b5_2.heavy 391.216 / 350.68 116253.0 22.819300174713135 39 13 10 6 10 1.3932696205059436 58.1237660810129 0.03560066223144531 3 0.9083626546952915 4.04531631411508 116253.0 136.12639584918233 0.0 - - - - - - - 405.2857142857143 232 7 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 455 58 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1221.[MT7]-VGHFDPVTR.3b3_1.heavy 391.216 / 438.258 61671.0 22.819300174713135 39 13 10 6 10 1.3932696205059436 58.1237660810129 0.03560066223144531 3 0.9083626546952915 4.04531631411508 61671.0 95.6866411810152 0.0 - - - - - - - 425.6 123 10 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 457 58 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1221.[MT7]-VGHFDPVTR.3y4_1.heavy 391.216 / 472.288 137047.0 22.819300174713135 39 13 10 6 10 1.3932696205059436 58.1237660810129 0.03560066223144531 3 0.9083626546952915 4.04531631411508 137047.0 108.56913273648568 0.0 - - - - - - - 354.5 274 4 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 459 58 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1221.[MT7]-VGHFDPVTR.3y5_1.heavy 391.216 / 587.315 20321.0 22.819300174713135 39 13 10 6 10 1.3932696205059436 58.1237660810129 0.03560066223144531 3 0.9083626546952915 4.04531631411508 20321.0 56.297609239312365 0.0 - - - - - - - 405.2857142857143 40 7 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 461 59 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1222.[MT7]-QTGLEDPLR.2y8_1.heavy 586.823 / 900.479 39564.0 26.445600509643555 44 14 10 10 10 2.326432693388988 42.98426525906788 0.0 3 0.9372693596479303 4.901462011952989 39564.0 92.50350710900474 0.0 - - - - - - - 317.0 79 2 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 463 59 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1222.[MT7]-QTGLEDPLR.2b4_1.heavy 586.823 / 544.321 14243.0 26.445600509643555 44 14 10 10 10 2.326432693388988 42.98426525906788 0.0 3 0.9372693596479303 4.901462011952989 14243.0 14.175497630331753 1.0 - - - - - - - 317.0 32 4 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 465 59 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1222.[MT7]-QTGLEDPLR.2b6_1.heavy 586.823 / 788.391 95586.0 26.445600509643555 44 14 10 10 10 2.326432693388988 42.98426525906788 0.0 3 0.9372693596479303 4.901462011952989 95586.0 184.28705313080667 0.0 - - - - - - - 317.0 191 3 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 467 59 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1222.[MT7]-QTGLEDPLR.2b5_1.heavy 586.823 / 673.364 18041.0 26.445600509643555 44 14 10 10 10 2.326432693388988 42.98426525906788 0.0 3 0.9372693596479303 4.901462011952989 18041.0 37.67469543600598 0.0 - - - - - - - 317.0 36 6 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 469 60 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1337.[MT7]-IVLPEDLQLK[MT7].2y4_1.heavy 728.455 / 645.442 41395.0 36.122100830078125 48 18 10 10 10 7.456568114440013 13.410995308464367 0.0 3 0.9861444396727347 10.472433103935508 41395.0 90.5000385853691 0.0 - - - - - - - 635.6363636363636 82 11 FANCL Fanconi anemia, complementation group L 471 60 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1337.[MT7]-IVLPEDLQLK[MT7].2y8_1.heavy 728.455 / 1099.65 41037.0 36.122100830078125 48 18 10 10 10 7.456568114440013 13.410995308464367 0.0 3 0.9861444396727347 10.472433103935508 41037.0 151.69454740808106 0.0 - - - - - - - 278.44444444444446 82 9 FANCL Fanconi anemia, complementation group L 473 60 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1337.[MT7]-IVLPEDLQLK[MT7].2y9_1.heavy 728.455 / 1198.72 25805.0 36.122100830078125 48 18 10 10 10 7.456568114440013 13.410995308464367 0.0 3 0.9861444396727347 10.472433103935508 25805.0 36.488984013946066 0.0 - - - - - - - 255.71428571428572 51 7 FANCL Fanconi anemia, complementation group L 475 60 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1337.[MT7]-IVLPEDLQLK[MT7].2y7_1.heavy 728.455 / 986.564 217907.0 36.122100830078125 48 18 10 10 10 7.456568114440013 13.410995308464367 0.0 3 0.9861444396727347 10.472433103935508 217907.0 608.6221628333803 0.0 - - - - - - - 238.66666666666666 435 3 FANCL Fanconi anemia, complementation group L 477 61 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1224.[MT7]-VLGLELNK[MT7].2y4_1.heavy 587.376 / 647.385 14076.0 31.629600524902344 42 18 6 10 8 5.154119844172698 19.401954751413292 0.0 4 0.9843490758913127 9.851998086981958 14076.0 28.10100973604198 0.0 - - - - - - - 670.0 28 7 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 479 61 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1224.[MT7]-VLGLELNK[MT7].2y3_1.heavy 587.376 / 518.342 13783.0 31.629600524902344 42 18 6 10 8 5.154119844172698 19.401954751413292 0.0 4 0.9843490758913127 9.851998086981958 13783.0 25.611191815856778 0.0 - - - - - - - 293.0 27 5 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 481 61 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1224.[MT7]-VLGLELNK[MT7].2y6_1.heavy 587.376 / 817.49 28738.0 31.629600524902344 42 18 6 10 8 5.154119844172698 19.401954751413292 0.0 4 0.9843490758913127 9.851998086981958 28738.0 47.85096444906713 0.0 - - - - - - - 754.0 57 7 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 483 61 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1224.[MT7]-VLGLELNK[MT7].2y7_1.heavy 587.376 / 930.574 38709.0 31.629600524902344 42 18 6 10 8 5.154119844172698 19.401954751413292 0.0 4 0.9843490758913127 9.851998086981958 38709.0 162.47150170648464 1.0 - - - - - - - 293.0 121 4 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 485 62 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1330.[MT7]-ALHELLLSAQR.2y8_1.heavy 697.915 / 929.542 48208.0 30.83679962158203 48 18 10 10 10 15.170492466886735 6.591743822309933 0.0 3 0.9888414693368789 11.67223962388853 48208.0 100.0468315425589 0.0 - - - - - - - 317.0 96 5 GADD45G growth arrest and DNA-damage-inducible, gamma 487 62 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1330.[MT7]-ALHELLLSAQR.2b4_1.heavy 697.915 / 595.332 34570.0 30.83679962158203 48 18 10 10 10 15.170492466886735 6.591743822309933 0.0 3 0.9888414693368789 11.67223962388853 34570.0 134.4994742376446 0.0 - - - - - - - 317.0 69 5 GADD45G growth arrest and DNA-damage-inducible, gamma 489 62 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1330.[MT7]-ALHELLLSAQR.2y9_1.heavy 697.915 / 1066.6 40914.0 30.83679962158203 48 18 10 10 10 15.170492466886735 6.591743822309933 0.0 3 0.9888414693368789 11.67223962388853 40914.0 88.13613312064157 0.0 - - - - - - - 317.0 81 5 GADD45G growth arrest and DNA-damage-inducible, gamma 491 62 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1330.[MT7]-ALHELLLSAQR.2y7_1.heavy 697.915 / 800.499 41231.0 30.83679962158203 48 18 10 10 10 15.170492466886735 6.591743822309933 0.0 3 0.9888414693368789 11.67223962388853 41231.0 137.8587395626559 0.0 - - - - - - - 317.0 82 5 GADD45G growth arrest and DNA-damage-inducible, gamma 493 63 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1225.[MT7]-LTDAQILTR.2y8_1.heavy 587.849 / 917.505 89667.0 28.577899932861328 50 20 10 10 10 6.017350735647989 16.618609150964062 0.0 3 0.9936451419969946 15.473166041027039 89667.0 103.39521935991928 0.0 - - - - - - - 333.0 179 2 RFC2 replication factor C (activator 1) 2, 40kDa 495 63 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1225.[MT7]-LTDAQILTR.2y6_1.heavy 587.849 / 701.43 69333.0 28.577899932861328 50 20 10 10 10 6.017350735647989 16.618609150964062 0.0 3 0.9936451419969946 15.473166041027039 69333.0 20.002394209800727 1.0 - - - - - - - 1142.7142857142858 158 7 RFC2 replication factor C (activator 1) 2, 40kDa 497 63 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1225.[MT7]-LTDAQILTR.2b5_1.heavy 587.849 / 673.364 27667.0 28.577899932861328 50 20 10 10 10 6.017350735647989 16.618609150964062 0.0 3 0.9936451419969946 15.473166041027039 27667.0 21.028105897985427 0.0 - - - - - - - 333.0 55 3 RFC2 replication factor C (activator 1) 2, 40kDa 499 63 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1225.[MT7]-LTDAQILTR.2y7_1.heavy 587.849 / 816.457 32333.0 28.577899932861328 50 20 10 10 10 6.017350735647989 16.618609150964062 0.0 3 0.9936451419969946 15.473166041027039 32333.0 46.23619 0.0 - - - - - - - 333.0 64 5 RFC2 replication factor C (activator 1) 2, 40kDa 501 64 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1331.[MT7]-C[CAM]AGNEDIITLR.2y5_1.heavy 703.365 / 615.419 13667.0 28.888700485229492 46 16 10 10 10 1.963822765585621 35.30030675024951 0.0 3 0.9660822889984374 6.682113897305501 13667.0 20.280286670665866 0.0 - - - - - - - 333.0 27 2 PCNA proliferating cell nuclear antigen 503 64 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1331.[MT7]-C[CAM]AGNEDIITLR.2y9_1.heavy 703.365 / 1030.55 5000.0 28.888700485229492 46 16 10 10 10 1.963822765585621 35.30030675024951 0.0 3 0.9660822889984374 6.682113897305501 5000.0 22.061491776634206 0.0 - - - - - - - 333.0 10 1 PCNA proliferating cell nuclear antigen 505 64 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1331.[MT7]-C[CAM]AGNEDIITLR.2b6_1.heavy 703.365 / 791.311 8000.0 28.888700485229492 46 16 10 10 10 1.963822765585621 35.30030675024951 0.0 3 0.9660822889984374 6.682113897305501 8000.0 17.269861693309384 0.0 - - - - - - - 333.0 16 3 PCNA proliferating cell nuclear antigen 507 64 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1331.[MT7]-C[CAM]AGNEDIITLR.2y10_1.heavy 703.365 / 1101.59 9667.0 28.888700485229492 46 16 10 10 10 1.963822765585621 35.30030675024951 0.0 3 0.9660822889984374 6.682113897305501 9667.0 42.65368820094457 0.0 - - - - - - - 333.0 19 3 PCNA proliferating cell nuclear antigen 509 65 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1226.[MT7]-ESPLGQEK[MT7].2y4_1.heavy 588.329 / 605.338 21174.0 20.036699295043945 44 14 10 10 10 1.1815574660146968 50.002876570544736 0.0 3 0.9304225386682082 4.651330906988473 21174.0 37.69288247232018 0.0 - - - - - - - 419.0 42 3 CCNH cyclin H 511 65 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1226.[MT7]-ESPLGQEK[MT7].2y5_1.heavy 588.329 / 718.422 10482.0 20.036699295043945 44 14 10 10 10 1.1815574660146968 50.002876570544736 0.0 3 0.9304225386682082 4.651330906988473 10482.0 9.008320816658786 1.0 - - - - - - - 366.75 20 12 CCNH cyclin H 513 65 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1226.[MT7]-ESPLGQEK[MT7].2y6_1.heavy 588.329 / 815.474 49477.0 20.036699295043945 44 14 10 10 10 1.1815574660146968 50.002876570544736 0.0 3 0.9304225386682082 4.651330906988473 49477.0 132.43981414015852 0.0 - - - - - - - 314.5 98 8 CCNH cyclin H 515 65 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1226.[MT7]-ESPLGQEK[MT7].2y7_1.heavy 588.329 / 902.506 31028.0 20.036699295043945 44 14 10 10 10 1.1815574660146968 50.002876570544736 0.0 3 0.9304225386682082 4.651330906988473 31028.0 33.88326474446467 1.0 - - - - - - - 279.6666666666667 88 9 CCNH cyclin H 517 66 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1332.[MT7]-SEYQLVVNAVR.2y8_1.heavy 711.397 / 898.547 3580.0 31.629600524902344 44 14 10 10 10 1.6746611207071884 47.436939202976134 0.0 3 0.942072053570754 5.10269010620345 3580.0 11.372885906040269 1.0 - - - - - - - 298.0 8 5 SOCS3 suppressor of cytokine signaling 3 519 66 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1332.[MT7]-SEYQLVVNAVR.2y9_1.heavy 711.397 / 1061.61 4475.0 31.629600524902344 44 14 10 10 10 1.6746611207071884 47.436939202976134 0.0 3 0.942072053570754 5.10269010620345 4475.0 17.61577181208054 0.0 - - - - - - - 298.0 8 2 SOCS3 suppressor of cytokine signaling 3 521 66 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1332.[MT7]-SEYQLVVNAVR.2b4_1.heavy 711.397 / 652.306 9845.0 31.629600524902344 44 14 10 10 10 1.6746611207071884 47.436939202976134 0.0 3 0.942072053570754 5.10269010620345 9845.0 14.289526819923372 0.0 - - - - - - - 298.0 19 5 SOCS3 suppressor of cytokine signaling 3 523 66 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1332.[MT7]-SEYQLVVNAVR.2y7_1.heavy 711.397 / 770.488 8950.0 31.629600524902344 44 14 10 10 10 1.6746611207071884 47.436939202976134 0.0 3 0.942072053570754 5.10269010620345 8950.0 9.751466890192791 0.0 - - - - - - - 298.0 17 6 SOCS3 suppressor of cytokine signaling 3 525 67 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1227.[MT7]-TTSILC[CAM]LAR.2y4_1.heavy 589.838 / 519.271 17443.0 31.726999282836914 50 20 10 10 10 6.840683117725838 14.618423084220375 0.0 3 0.9930460414071028 14.790890637755457 17443.0 35.41401174776492 0.0 - - - - - - - 291.0 34 2 RFC2 replication factor C (activator 1) 2, 40kDa 527 67 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1227.[MT7]-TTSILC[CAM]LAR.2y5_1.heavy 589.838 / 632.355 18606.0 31.726999282836914 50 20 10 10 10 6.840683117725838 14.618423084220375 0.0 3 0.9930460414071028 14.790890637755457 18606.0 9.850679154837717 1.0 - - - - - - - 291.0 41 2 RFC2 replication factor C (activator 1) 2, 40kDa 529 67 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1227.[MT7]-TTSILC[CAM]LAR.2b5_1.heavy 589.838 / 660.405 12501.0 31.726999282836914 50 20 10 10 10 6.840683117725838 14.618423084220375 0.0 3 0.9930460414071028 14.790890637755457 12501.0 26.664977064220185 0.0 - - - - - - - 291.0 25 5 RFC2 replication factor C (activator 1) 2, 40kDa 531 67 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1227.[MT7]-TTSILC[CAM]LAR.2y7_1.heavy 589.838 / 832.471 20641.0 31.726999282836914 50 20 10 10 10 6.840683117725838 14.618423084220375 0.0 3 0.9930460414071028 14.790890637755457 20641.0 68.21122203098106 0.0 - - - - - - - 664.1428571428571 41 7 RFC2 replication factor C (activator 1) 2, 40kDa 533 68 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1533.[MT7]-FLDPDFQPSC[CAM]SEVDLIGFVVSVVK[MT7].4y4_1.heavy 747.143 / 576.384 1005.0 52.38475036621094 42 18 10 6 8 4.087665892610774 24.46383893085999 0.036102294921875 4 0.9888897015221878 11.697595241878545 1005.0 22.001351351351353 0.0 - - - - - - - 93.22222222222223 2 18 BRCA2 breast cancer 2, early onset 535 68 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1533.[MT7]-FLDPDFQPSC[CAM]SEVDLIGFVVSVVK[MT7].4b5_1.heavy 747.143 / 732.369 1005.0 52.38475036621094 42 18 10 6 8 4.087665892610774 24.46383893085999 0.036102294921875 4 0.9888897015221878 11.697595241878545 1005.0 8.434821428571428 1.0 - - - - - - - 97.0 2 19 BRCA2 breast cancer 2, early onset 537 68 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1533.[MT7]-FLDPDFQPSC[CAM]SEVDLIGFVVSVVK[MT7].4b7_1.heavy 747.143 / 1007.5 559.0 52.38475036621094 42 18 10 6 8 4.087665892610774 24.46383893085999 0.036102294921875 4 0.9888897015221878 11.697595241878545 559.0 26.478947368421053 1.0 - - - - - - - 0.0 1 0 BRCA2 breast cancer 2, early onset 539 68 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1533.[MT7]-FLDPDFQPSC[CAM]SEVDLIGFVVSVVK[MT7].4b3_1.heavy 747.143 / 520.289 1843.0 52.38475036621094 42 18 10 6 8 4.087665892610774 24.46383893085999 0.036102294921875 4 0.9888897015221878 11.697595241878545 1843.0 119.4672972972973 0.0 - - - - - - - 65.70588235294117 3 17 BRCA2 breast cancer 2, early onset 541 69 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1535.[MT7]-NLPFYDVLDVLIK[MT7]PTSLVQSSIQR.4b4_1.heavy 759.186 / 616.357 11161.0 49.7545747756958 39 13 10 6 10 1.3002859985989077 51.202431931997715 0.035701751708984375 3 0.9237075140872856 4.439365646998739 11161.0 68.72449783698232 0.0 - - - - - - - 263.1875 22 16 PIAS2 protein inhibitor of activated STAT, 2 543 69 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1535.[MT7]-NLPFYDVLDVLIK[MT7]PTSLVQSSIQR.4y11_1.heavy 759.186 / 1215.67 10460.0 49.7545747756958 39 13 10 6 10 1.3002859985989077 51.202431931997715 0.035701751708984375 3 0.9237075140872856 4.439365646998739 10460.0 48.46149878818392 0.0 - - - - - - - 260.0 20 13 PIAS2 protein inhibitor of activated STAT, 2 545 69 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1535.[MT7]-NLPFYDVLDVLIK[MT7]PTSLVQSSIQR.4y6_1.heavy 759.186 / 718.384 10268.0 49.7545747756958 39 13 10 6 10 1.3002859985989077 51.202431931997715 0.035701751708984375 3 0.9237075140872856 4.439365646998739 10268.0 3.0662187383352 1.0 - - - - - - - 200.42857142857142 20 14 PIAS2 protein inhibitor of activated STAT, 2 547 69 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1535.[MT7]-NLPFYDVLDVLIK[MT7]PTSLVQSSIQR.4b6_1.heavy 759.186 / 894.448 15817.0 49.7545747756958 39 13 10 6 10 1.3002859985989077 51.202431931997715 0.035701751708984375 3 0.9237075140872856 4.439365646998739 15817.0 54.910612251238305 0.0 - - - - - - - 269.22222222222223 31 9 PIAS2 protein inhibitor of activated STAT, 2 549 70 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1340.[MT7]-LSVEIWDWDR.2b4_1.heavy 731.876 / 573.336 32789.0 41.11389923095703 48 18 10 10 10 4.26753333520755 23.43274021435067 0.0 3 0.9869948902743775 10.810195858015751 32789.0 207.85066644656558 0.0 - - - - - - - 792.7142857142857 65 7 PRKCA protein kinase C, alpha 551 70 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1340.[MT7]-LSVEIWDWDR.2y9_1.heavy 731.876 / 1205.56 32789.0 41.11389923095703 48 18 10 10 10 4.26753333520755 23.43274021435067 0.0 3 0.9869948902743775 10.810195858015751 32789.0 89.06152315924058 0.0 - - - - - - - 355.6363636363636 65 11 PRKCA protein kinase C, alpha 553 70 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1340.[MT7]-LSVEIWDWDR.2y6_1.heavy 731.876 / 890.416 19739.0 41.11389923095703 48 18 10 10 10 4.26753333520755 23.43274021435067 0.0 3 0.9869948902743775 10.810195858015751 19739.0 83.21094053871231 0.0 - - - - - - - 293.4 39 15 PRKCA protein kinase C, alpha 555 70 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1340.[MT7]-LSVEIWDWDR.2y7_1.heavy 731.876 / 1019.46 17129.0 41.11389923095703 48 18 10 10 10 4.26753333520755 23.43274021435067 0.0 3 0.9869948902743775 10.810195858015751 17129.0 68.39427640574769 0.0 - - - - - - - 250.76923076923077 34 13 PRKCA protein kinase C, alpha 557 71 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1531.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGR.4y9_1.heavy 724.14 / 895.5 4037.0 44.72719955444336 44 16 10 10 8 2.018779279007427 33.168958266261534 0.0 4 0.9629783493823401 6.394188493138668 4037.0 8.431447661469933 3.0 - - - - - - - 359.2 8 5 VHL von Hippel-Lindau tumor suppressor 559 71 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1531.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGR.4b5_1.heavy 724.14 / 652.451 3140.0 44.72719955444336 44 16 10 10 8 2.018779279007427 33.168958266261534 0.0 4 0.9629783493823401 6.394188493138668 3140.0 0.5373239781263434 1.0 - - - - - - - 239.6 8 5 VHL von Hippel-Lindau tumor suppressor 561 71 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1531.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGR.4y6_1.heavy 724.14 / 584.315 4934.0 44.72719955444336 44 16 10 10 8 2.018779279007427 33.168958266261534 0.0 4 0.9629783493823401 6.394188493138668 4934.0 1.2330919916204195 2.0 - - - - - - - 299.1666666666667 9 6 VHL von Hippel-Lindau tumor suppressor 563 71 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1531.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGR.4b6_1.heavy 724.14 / 838.531 1047.0 44.72719955444336 44 16 10 10 8 2.018779279007427 33.168958266261534 0.0 4 0.9629783493823401 6.394188493138668 1047.0 3.5616053511705683 9.0 - - - - - - - 310.7692307692308 3 13 VHL von Hippel-Lindau tumor suppressor 565 72 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1230.[MT7]-TGFLDTLK[MT7].2y4_1.heavy 591.852 / 620.374 55110.0 32.29999923706055 50 20 10 10 10 10.976187056249987 9.110631905918428 0.0 3 0.9962735705465007 20.21068166493698 55110.0 103.25664259927797 0.0 - - - - - - - 593.5714285714286 110 7 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 567 72 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1230.[MT7]-TGFLDTLK[MT7].2y3_1.heavy 591.852 / 505.347 153146.0 32.29999923706055 50 20 10 10 10 10.976187056249987 9.110631905918428 0.0 3 0.9962735705465007 20.21068166493698 153146.0 210.49697940925333 0.0 - - - - - - - 277.0 306 3 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 569 72 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1230.[MT7]-TGFLDTLK[MT7].2b5_1.heavy 591.852 / 678.358 112436.0 32.29999923706055 50 20 10 10 10 10.976187056249987 9.110631905918428 0.0 3 0.9962735705465007 20.21068166493698 112436.0 279.2634223826715 0.0 - - - - - - - 277.0 224 2 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 571 72 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1230.[MT7]-TGFLDTLK[MT7].2y7_1.heavy 591.852 / 937.547 56772.0 32.29999923706055 50 20 10 10 10 10.976187056249987 9.110631905918428 0.0 3 0.9962735705465007 20.21068166493698 56772.0 44.069535531266055 0.0 - - - - - - - 277.0 113 3 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 573 73 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 EFTU1_ECO24.FESEVYILSK.2y8.peptide 607.82 / 938.52 2437060.0 31.482099533081055 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 2437060.0 5.026934430127953 1.0 - - - - - - - 19875.0 5151 1 575 73 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 EFTU1_ECO24.FESEVYILSK.2y6.peptide 607.82 / 722.44 877305.0 31.482099533081055 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 877305.0 91.24043764122912 0.0 - - - - - - - 5420.0 1754 1 577 73 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 EFTU1_ECO24.FESEVYILSK.2y5.peptide 607.82 / 623.38 1085950.0 31.482099533081055 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1085950.0 80.56564803789793 0.0 - - - - - - - 6926.0 2171 1 579 74 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1536.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGRR.4b4_1.heavy 763.165 / 553.383 2666.0 42.52129936218262 39 13 10 6 10 3.655243999792232 27.357954764629696 0.037601470947265625 3 0.9203742478210842 4.344210168497593 2666.0 2.4664 0.0 - - - - - - - 687.625 5 8 VHL von Hippel-Lindau tumor suppressor 581 74 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1536.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGRR.4b5_1.heavy 763.165 / 652.451 9333.0 42.52129936218262 39 13 10 6 10 3.655243999792232 27.357954764629696 0.037601470947265625 3 0.9203742478210842 4.344210168497593 9333.0 14.388913652349883 1.0 - - - - - - - 222.33333333333334 18 3 VHL von Hippel-Lindau tumor suppressor 583 74 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1536.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGRR.4y7_1.heavy 763.165 / 740.416 1167.0 42.52129936218262 39 13 10 6 10 3.655243999792232 27.357954764629696 0.037601470947265625 3 0.9203742478210842 4.344210168497593 1167.0 0.2883515707730321 17.0 - - - - - - - 229.25 5 8 VHL von Hippel-Lindau tumor suppressor 585 74 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1536.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGRR.4y14_2.heavy 763.165 / 768.918 6166.0 42.52129936218262 39 13 10 6 10 3.655243999792232 27.357954764629696 0.037601470947265625 3 0.9203742478210842 4.344210168497593 6166.0 0.528589798542649 2.0 - - - - - - - 222.33333333333334 12 3 VHL von Hippel-Lindau tumor suppressor 587 75 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1329.[MT7]-SLVK[MT7]PENYR.3y1_1.heavy 465.273 / 175.119 28819.0 21.08764934539795 44 18 10 6 10 2.9631278183814813 26.61866959011693 0.037799835205078125 3 0.9856233170078783 10.280431297437541 28819.0 9.985848214623315 1.0 - - - - - - - 860.0 57 1 VHL von Hippel-Lindau tumor suppressor 589 75 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1329.[MT7]-SLVK[MT7]PENYR.3y8_2.heavy 465.273 / 581.839 37851.0 21.08764934539795 44 18 10 6 10 2.9631278183814813 26.61866959011693 0.037799835205078125 3 0.9856233170078783 10.280431297437541 37851.0 183.08584314488664 0.0 - - - - - - - 286.6666666666667 75 6 VHL von Hippel-Lindau tumor suppressor 591 75 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1329.[MT7]-SLVK[MT7]PENYR.3y5_1.heavy 465.273 / 678.321 120866.0 21.08764934539795 44 18 10 6 10 2.9631278183814813 26.61866959011693 0.037799835205078125 3 0.9856233170078783 10.280431297437541 120866.0 117.36987603305785 0.0 - - - - - - - 368.57142857142856 241 7 VHL von Hippel-Lindau tumor suppressor 593 75 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1329.[MT7]-SLVK[MT7]PENYR.3b7_2.heavy 465.273 / 528.818 29249.0 21.08764934539795 44 18 10 6 10 2.9631278183814813 26.61866959011693 0.037799835205078125 3 0.9856233170078783 10.280431297437541 29249.0 36.27782945736434 0.0 - - - - - - - 358.3333333333333 58 3 VHL von Hippel-Lindau tumor suppressor 595 76 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1466.[MT7]-SDVLLGTAALDIYETLK[MT7].3y3_1.heavy 704.068 / 505.347 56446.0 47.10279846191406 41 11 10 10 10 1.2308649997576464 54.69920482493725 0.0 3 0.8789526034049467 3.5107765924918644 56446.0 119.08390282030578 0.0 - - - - - - - 300.42857142857144 112 7 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 597 76 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1466.[MT7]-SDVLLGTAALDIYETLK[MT7].3b4_1.heavy 704.068 / 559.321 64968.0 47.10279846191406 41 11 10 10 10 1.2308649997576464 54.69920482493725 0.0 3 0.8789526034049467 3.5107765924918644 64968.0 149.76405695113183 0.0 - - - - - - - 207.375 129 8 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 599 76 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1466.[MT7]-SDVLLGTAALDIYETLK[MT7].3b5_1.heavy 704.068 / 672.405 36081.0 47.10279846191406 41 11 10 10 10 1.2308649997576464 54.69920482493725 0.0 3 0.8789526034049467 3.5107765924918644 36081.0 81.46535175691479 0.0 - - - - - - - 295.1111111111111 72 9 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 601 76 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1466.[MT7]-SDVLLGTAALDIYETLK[MT7].3y5_1.heavy 704.068 / 797.453 66075.0 47.10279846191406 41 11 10 10 10 1.2308649997576464 54.69920482493725 0.0 3 0.8789526034049467 3.5107765924918644 66075.0 92.10523190322264 0.0 - - - - - - - 774.7142857142857 132 7 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 603 77 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1327.[MT7]-GGYIGSTYFER.2y8_1.heavy 697.347 / 972.479 12449.0 29.96820068359375 45 15 10 10 10 1.9037171719487052 41.56178292389694 0.0 3 0.9578133191182634 5.987368060005441 12449.0 73.3276463414634 0.0 - - - - - - - 328.0 24 3 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 605 77 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1327.[MT7]-GGYIGSTYFER.2b4_1.heavy 697.347 / 535.3 17691.0 29.96820068359375 45 15 10 10 10 1.9037171719487052 41.56178292389694 0.0 3 0.9578133191182634 5.987368060005441 17691.0 22.73614445574771 0.0 - - - - - - - 328.0 35 4 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 607 77 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1327.[MT7]-GGYIGSTYFER.2b5_1.heavy 697.347 / 592.321 8190.0 29.96820068359375 45 15 10 10 10 1.9037171719487052 41.56178292389694 0.0 3 0.9578133191182634 5.987368060005441 8190.0 31.802979306751354 0.0 - - - - - - - 328.0 16 7 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 609 77 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1327.[MT7]-GGYIGSTYFER.2y7_1.heavy 697.347 / 859.394 23588.0 29.96820068359375 45 15 10 10 10 1.9037171719487052 41.56178292389694 0.0 3 0.9578133191182634 5.987368060005441 23588.0 93.5611584993673 0.0 - - - - - - - 328.0 47 3 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 611 78 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1328.[MT7]-RATVVESSEK[MT7].3y3_1.heavy 465.268 / 507.289 62580.0 16.21769905090332 45 17 10 10 8 2.0348434095249655 34.82906372844718 0.0 4 0.9709378050715272 7.221721210829188 62580.0 96.75048174107546 1.0 - - - - - - - 737.7777777777778 149 9 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 613 78 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1328.[MT7]-RATVVESSEK[MT7].3b4_1.heavy 465.268 / 572.364 59925.0 16.21769905090332 45 17 10 10 8 2.0348434095249655 34.82906372844718 0.0 4 0.9709378050715272 7.221721210829188 59925.0 86.63085065218675 0.0 - - - - - - - 284.5 119 4 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 615 78 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1328.[MT7]-RATVVESSEK[MT7].3y4_1.heavy 465.268 / 594.321 76233.0 16.21769905090332 45 17 10 10 8 2.0348434095249655 34.82906372844718 0.0 4 0.9709378050715272 7.221721210829188 76233.0 134.28890008299257 0.0 - - - - - - - 623.2857142857143 152 7 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 617 78 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1328.[MT7]-RATVVESSEK[MT7].3y5_1.heavy 465.268 / 723.364 35083.0 16.21769905090332 45 17 10 10 8 2.0348434095249655 34.82906372844718 0.0 4 0.9709378050715272 7.221721210829188 35083.0 358.031247368421 0.0 - - - - - - - 217.0 70 7 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 619 79 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1464.[MT7]-SDVWSFGILLTELTTK[MT7].3y6_1.heavy 700.061 / 836.485 61647.0 50.83489990234375 44 14 10 10 10 2.71111946788287 36.88513220632458 0.0 3 0.9360338749118736 4.853384509864206 61647.0 228.42221887618533 0.0 - - - - - - - 717.6666666666666 123 9 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 621 79 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1464.[MT7]-SDVWSFGILLTELTTK[MT7].3y4_1.heavy 700.061 / 606.394 70128.0 50.83489990234375 44 14 10 10 10 2.71111946788287 36.88513220632458 0.0 3 0.9360338749118736 4.853384509864206 70128.0 181.03991973657133 0.0 - - - - - - - 347.5833333333333 140 12 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 623 79 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1464.[MT7]-SDVWSFGILLTELTTK[MT7].3b8_1.heavy 700.061 / 1036.52 50454.0 50.83489990234375 44 14 10 10 10 2.71111946788287 36.88513220632458 0.0 3 0.9360338749118736 4.853384509864206 50454.0 421.22877135213 0.0 - - - - - - - 203.6 100 15 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 625 79 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1464.[MT7]-SDVWSFGILLTELTTK[MT7].3b7_1.heavy 700.061 / 923.438 95957.0 50.83489990234375 44 14 10 10 10 2.71111946788287 36.88513220632458 0.0 3 0.9360338749118736 4.853384509864206 95957.0 266.834675973403 0.0 - - - - - - - 228.0 191 10 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 627 80 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1465.[MT7]-SDVWSFGILLTELTTK[MT7].4y4_1.heavy 525.297 / 606.394 N/A N/A - - - - - - - - - 0.0 - - - - - - - SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 629 80 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1465.[MT7]-SDVWSFGILLTELTTK[MT7].4b7_1.heavy 525.297 / 923.438 N/A N/A - - - - - - - - - 0.0 - - - - - - - SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 631 80 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1465.[MT7]-SDVWSFGILLTELTTK[MT7].4b4_1.heavy 525.297 / 632.316 N/A N/A - - - - - - - - - 0.0 - - - - - - - SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 633 80 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1465.[MT7]-SDVWSFGILLTELTTK[MT7].4b5_1.heavy 525.297 / 719.348 N/A N/A - - - - - - - - - 0.0 - - - - - - - SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 635 81 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1321.[MT7]-WTAPEAALYGR.2y8_1.heavy 689.865 / 876.457 75226.0 31.678300857543945 47 17 10 10 10 10.261042765889401 9.745598208831971 0.0 3 0.9793692402215723 8.577392155231864 75226.0 85.92157075060533 0.0 - - - - - - - 295.0 150 3 FYN;SRC;YES1 FYN oncogene related to SRC, FGR, YES;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 637 81 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1321.[MT7]-WTAPEAALYGR.2y9_1.heavy 689.865 / 947.495 25075.0 31.678300857543945 47 17 10 10 10 10.261042765889401 9.745598208831971 0.0 3 0.9793692402215723 8.577392155231864 25075.0 48.2375 0.0 - - - - - - - 295.0 50 7 FYN;SRC;YES1 FYN oncogene related to SRC, FGR, YES;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 639 81 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1321.[MT7]-WTAPEAALYGR.2y6_1.heavy 689.865 / 650.362 17110.0 31.678300857543945 47 17 10 10 10 10.261042765889401 9.745598208831971 0.0 3 0.9793692402215723 8.577392155231864 17110.0 31.61 0.0 - - - - - - - 737.5 34 8 FYN;SRC;YES1 FYN oncogene related to SRC, FGR, YES;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 641 81 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1321.[MT7]-WTAPEAALYGR.2y10_1.heavy 689.865 / 1048.54 69916.0 31.678300857543945 47 17 10 10 10 10.261042765889401 9.745598208831971 0.0 3 0.9793692402215723 8.577392155231864 69916.0 133.11690395480224 0.0 - - - - - - - 295.0 139 5 FYN;SRC;YES1 FYN oncogene related to SRC, FGR, YES;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 643 82 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1320.[MT7]-LDILELLEK[MT7].3y3_1.heavy 458.621 / 533.341 21591.0 45.59109878540039 45 15 10 10 10 1.711620432646944 40.11406357479952 0.0 3 0.9535938336321792 5.706641020749393 21591.0 300.39652173913043 0.0 - - - - - - - 220.4 43 5 ORC4 origin recognition complex, subunit 4 645 82 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1320.[MT7]-LDILELLEK[MT7].3b4_1.heavy 458.621 / 599.388 15265.0 45.59109878540039 45 15 10 10 10 1.711620432646944 40.11406357479952 0.0 3 0.9535938336321792 5.706641020749393 15265.0 108.18721818181817 0.0 - - - - - - - 236.0 30 7 ORC4 origin recognition complex, subunit 4 647 82 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1320.[MT7]-LDILELLEK[MT7].3b5_1.heavy 458.621 / 728.431 30392.0 45.59109878540039 45 15 10 10 10 1.711620432646944 40.11406357479952 0.0 3 0.9535938336321792 5.706641020749393 30392.0 242.33515678524373 0.0 - - - - - - - 275.1666666666667 60 6 ORC4 origin recognition complex, subunit 4 649 82 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1320.[MT7]-LDILELLEK[MT7].3b3_1.heavy 458.621 / 486.304 20078.0 45.59109878540039 45 15 10 10 10 1.711620432646944 40.11406357479952 0.0 3 0.9535938336321792 5.706641020749393 20078.0 103.13453841074181 0.0 - - - - - - - 292.5 40 8 ORC4 origin recognition complex, subunit 4 651 83 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1326.[MT7]-ERELEEC[CAM]QR.3y6_1.heavy 464.893 / 834.377 1563.0 16.674800872802734 42 12 10 10 10 1.4006774172755632 45.464563003881594 0.0 3 0.8947970037493599 3.7710757126976926 1563.0 16.022753846153847 0.0 - - - - - - - 195.0 3 2 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 653 83 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1326.[MT7]-ERELEEC[CAM]QR.3y5_1.heavy 464.893 / 721.293 3516.0 16.674800872802734 42 12 10 10 10 1.4006774172755632 45.464563003881594 0.0 3 0.8947970037493599 3.7710757126976926 3516.0 21.074326185323628 0.0 - - - - - - - 273.4 7 5 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 655 83 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1326.[MT7]-ERELEEC[CAM]QR.3b5_1.heavy 464.893 / 801.422 2149.0 16.674800872802734 42 12 10 10 10 1.4006774172755632 45.464563003881594 0.0 3 0.8947970037493599 3.7710757126976926 2149.0 9.181253172311193 0.0 - - - - - - - 244.0 4 4 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 657 83 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1326.[MT7]-ERELEEC[CAM]QR.3y4_1.heavy 464.893 / 592.251 9962.0 16.674800872802734 42 12 10 10 10 1.4006774172755632 45.464563003881594 0.0 3 0.8947970037493599 3.7710757126976926 9962.0 56.266948717948715 0.0 - - - - - - - 227.66666666666666 19 6 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 659 84 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1323.[MT7]-EDFFHC[CAM]LK[MT7].3y3_1.heavy 461.904 / 564.33 49521.0 30.225900650024414 50 20 10 10 10 12.686670241381 7.882288898297601 0.0 3 0.9979665126485263 27.363270913329714 49521.0 103.3466461435093 0.0 - - - - - - - 326.0 99 4 RCHY1 ring finger and CHY zinc finger domain containing 1 661 84 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1323.[MT7]-EDFFHC[CAM]LK[MT7].3b4_1.heavy 461.904 / 683.316 31277.0 30.225900650024414 50 20 10 10 10 12.686670241381 7.882288898297601 0.0 3 0.9979665126485263 27.363270913329714 31277.0 37.92782573617761 0.0 - - - - - - - 326.0 62 3 RCHY1 ring finger and CHY zinc finger domain containing 1 663 84 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1323.[MT7]-EDFFHC[CAM]LK[MT7].3y4_1.heavy 461.904 / 701.388 7168.0 30.225900650024414 50 20 10 10 10 12.686670241381 7.882288898297601 0.0 3 0.9979665126485263 27.363270913329714 7168.0 32.893644171779144 0.0 - - - - - - - 326.0 14 1 RCHY1 ring finger and CHY zinc finger domain containing 1 665 84 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1323.[MT7]-EDFFHC[CAM]LK[MT7].3b3_1.heavy 461.904 / 536.247 39747.0 30.225900650024414 50 20 10 10 10 12.686670241381 7.882288898297601 0.0 3 0.9979665126485263 27.363270913329714 39747.0 31.007423651498705 0.0 - - - - - - - 326.0 79 4 RCHY1 ring finger and CHY zinc finger domain containing 1 667 85 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1524.[MT7]-TLGEC[CAM]GFTSQTARPQAPATVGLAFR.4y5_1.heavy 695.862 / 563.33 62008.0 32.01570129394531 44 14 10 10 10 3.166609236256965 31.579520092034862 0.0 3 0.9361254471700258 4.85690018968367 62008.0 100.82712085063132 1.0 - - - - - - - 700.4285714285714 129 7 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 669 85 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1524.[MT7]-TLGEC[CAM]GFTSQTARPQAPATVGLAFR.4y12_1.heavy 695.862 / 1227.68 6345.0 32.01570129394531 44 14 10 10 10 3.166609236256965 31.579520092034862 0.0 3 0.9361254471700258 4.85690018968367 6345.0 25.318755415944537 0.0 - - - - - - - 288.0 12 5 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 671 85 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1524.[MT7]-TLGEC[CAM]GFTSQTARPQAPATVGLAFR.4b4_1.heavy 695.862 / 545.305 38358.0 32.01570129394531 44 14 10 10 10 3.166609236256965 31.579520092034862 0.0 3 0.9361254471700258 4.85690018968367 38358.0 107.27682127007343 0.0 - - - - - - - 288.0 76 5 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 673 85 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1524.[MT7]-TLGEC[CAM]GFTSQTARPQAPATVGLAFR.4b6_1.heavy 695.862 / 762.357 72102.0 32.01570129394531 44 14 10 10 10 3.166609236256965 31.579520092034862 0.0 3 0.9361254471700258 4.85690018968367 72102.0 161.22097055729756 0.0 - - - - - - - 288.0 144 2 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 675 86 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1521.[MT7]-FQPLDQVVVDNVFPNC[CAM]ILLLK[MT7].3b6_1.heavy 920.518 / 873.459 28987.0 46.67390060424805 44 14 10 10 10 1.8524052272790021 47.55314643458289 0.0 3 0.9397778980837334 5.003575227249252 28987.0 111.61654010451227 0.0 - - - - - - - 234.58333333333334 57 12 RNASEH2B ribonuclease H2, subunit B 677 86 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1521.[MT7]-FQPLDQVVVDNVFPNC[CAM]ILLLK[MT7].3b5_1.heavy 920.518 / 745.4 13966.0 46.67390060424805 44 14 10 10 10 1.8524052272790021 47.55314643458289 0.0 3 0.9397778980837334 5.003575227249252 13966.0 46.15657196969697 0.0 - - - - - - - 285.07142857142856 27 14 RNASEH2B ribonuclease H2, subunit B 679 86 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1521.[MT7]-FQPLDQVVVDNVFPNC[CAM]ILLLK[MT7].3y8_1.heavy 920.518 / 1114.68 28753.0 46.67390060424805 44 14 10 10 10 1.8524052272790021 47.55314643458289 0.0 3 0.9397778980837334 5.003575227249252 28753.0 58.3162449690579 0.0 - - - - - - - 687.5714285714286 57 7 RNASEH2B ribonuclease H2, subunit B 681 86 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1521.[MT7]-FQPLDQVVVDNVFPNC[CAM]ILLLK[MT7].3b7_1.heavy 920.518 / 972.527 28048.0 46.67390060424805 44 14 10 10 10 1.8524052272790021 47.55314643458289 0.0 3 0.9397778980837334 5.003575227249252 28048.0 59.72742759795571 0.0 - - - - - - - 743.5555555555555 56 9 RNASEH2B ribonuclease H2, subunit B 683 87 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1528.[MT7]-LVQLYAVVSEEPIYIVTEYMSK[MT7].4y4_1.heavy 716.392 / 672.351 2939.0 52.402801513671875 48 18 10 10 10 3.4683947811186187 28.831781360179605 0.0 3 0.9839769487529264 9.736618510905279 2939.0 84.83417299578059 0.0 - - - - - - - 101.23809523809524 5 21 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 685 87 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1528.[MT7]-LVQLYAVVSEEPIYIVTEYMSK[MT7].4b4_1.heavy 716.392 / 598.404 4011.0 52.402801513671875 48 18 10 10 10 3.4683947811186187 28.831781360179605 0.0 3 0.9839769487529264 9.736618510905279 4011.0 55.90088790233074 0.0 - - - - - - - 92.72222222222223 8 18 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 687 87 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1528.[MT7]-LVQLYAVVSEEPIYIVTEYMSK[MT7].4b5_1.heavy 716.392 / 761.468 2204.0 52.402801513671875 48 18 10 10 10 3.4683947811186187 28.831781360179605 0.0 3 0.9839769487529264 9.736618510905279 2204.0 55.0449 1.0 - - - - - - - 81.77777777777777 4 18 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 689 87 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1528.[MT7]-LVQLYAVVSEEPIYIVTEYMSK[MT7].4b6_1.heavy 716.392 / 832.505 3972.0 52.402801513671875 48 18 10 10 10 3.4683947811186187 28.831781360179605 0.0 3 0.9839769487529264 9.736618510905279 3972.0 78.68274820143884 0.0 - - - - - - - 102.14285714285714 7 14 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 691 88 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1527.[MT7]-YC[CAM]FSEMAPVC[CAM]AVVGGILAQEIVK[MT7].4y4_1.heavy 708.12 / 632.41 N/A N/A - - - - - - - - - 0.0 - - - - - - - SAE1 SUMO1 activating enzyme subunit 1 693 88 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1527.[MT7]-YC[CAM]FSEMAPVC[CAM]AVVGGILAQEIVK[MT7].4b7_1.heavy 708.12 / 1033.42 N/A N/A - - - - - - - - - 0.0 - - - - - - - SAE1 SUMO1 activating enzyme subunit 1 695 88 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1527.[MT7]-YC[CAM]FSEMAPVC[CAM]AVVGGILAQEIVK[MT7].4y3_1.heavy 708.12 / 503.367 N/A N/A - - - - - - - - - 0.0 - - - - - - - SAE1 SUMO1 activating enzyme subunit 1 697 88 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1527.[MT7]-YC[CAM]FSEMAPVC[CAM]AVVGGILAQEIVK[MT7].4b6_1.heavy 708.12 / 962.387 N/A N/A - - - - - - - - - 0.0 - - - - - - - SAE1 SUMO1 activating enzyme subunit 1 699 89 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1470.[MT7]-IYDITNVLEGIDLIEK[MT7].3b6_1.heavy 712.74 / 864.458 67254.0 46.71369934082031 45 15 10 10 10 1.9401776311895083 45.25870884137419 0.0 3 0.9537864041858716 5.718611712093763 67254.0 58.14312653590861 0.0 - - - - - - - 387.0 134 3 E2F5 E2F transcription factor 5, p130-binding 701 89 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1470.[MT7]-IYDITNVLEGIDLIEK[MT7].3b4_1.heavy 712.74 / 649.368 41584.0 46.71369934082031 45 15 10 10 10 1.9401776311895083 45.25870884137419 0.0 3 0.9537864041858716 5.718611712093763 41584.0 28.21807741676243 0.0 - - - - - - - 232.0 83 5 E2F5 E2F transcription factor 5, p130-binding 703 89 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1470.[MT7]-IYDITNVLEGIDLIEK[MT7].3b3_1.heavy 712.74 / 536.284 60401.0 46.71369934082031 45 15 10 10 10 1.9401776311895083 45.25870884137419 0.0 3 0.9537864041858716 5.718611712093763 60401.0 59.52702079073771 0.0 - - - - - - - 319.25 120 4 E2F5 E2F transcription factor 5, p130-binding 705 89 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1470.[MT7]-IYDITNVLEGIDLIEK[MT7].3b7_1.heavy 712.74 / 963.527 56103.0 46.71369934082031 45 15 10 10 10 1.9401776311895083 45.25870884137419 0.0 3 0.9537864041858716 5.718611712093763 56103.0 54.06651884076801 0.0 - - - - - - - 139.2 112 5 E2F5 E2F transcription factor 5, p130-binding 707 90 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1525.[MT7]-ERWNFDFVTETPLEGDFAWER.4y8_1.heavy 697.834 / 1009.44 4176.0 42.418049812316895 36 10 10 6 10 5.237143474990313 19.094378543865453 0.036998748779296875 3 0.8240195772776686 2.8976450657306296 4176.0 12.490491017964072 1.0 - - - - - - - 267.2 8 10 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 709 90 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1525.[MT7]-ERWNFDFVTETPLEGDFAWER.4b7_2.heavy 697.834 / 570.273 5011.0 42.418049812316895 36 10 10 6 10 5.237143474990313 19.094378543865453 0.036998748779296875 3 0.8240195772776686 2.8976450657306296 5011.0 12.002395209580838 0.0 - - - - - - - 278.3333333333333 10 9 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 711 90 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1525.[MT7]-ERWNFDFVTETPLEGDFAWER.4y7_1.heavy 697.834 / 880.395 6848.0 42.418049812316895 36 10 10 6 10 5.237143474990313 19.094378543865453 0.036998748779296875 3 0.8240195772776686 2.8976450657306296 6848.0 26.694898203592814 0.0 - - - - - - - 229.625 13 8 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 713 90 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1525.[MT7]-ERWNFDFVTETPLEGDFAWER.4b6_1.heavy 697.834 / 992.471 2338.0 42.418049812316895 36 10 10 6 10 5.237143474990313 19.094378543865453 0.036998748779296875 3 0.8240195772776686 2.8976450657306296 2338.0 11.48 0.0 - - - - - - - 242.9090909090909 4 11 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 715 91 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 SUCC_ECO24.LVQQFTK.2y4.peptide 432.25 / 523.29 148006.0 21.039400100708008 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 148006.0 242.75713183764623 0.0 - - - - - - - 1133.0 296 8 717 91 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 SUCC_ECO24.LVQQFTK.2y6.peptide 432.25 / 750.41 242721.0 21.039400100708008 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 242721.0 1213.9822697391005 0.0 - - - - - - - 1726.0 485 10 719 91 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 SUCC_ECO24.LVQQFTK.2y5.peptide 432.25 / 651.35 734411.0 21.039400100708008 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 734411.0 3400.077716593709 0.0 - - - - - - - 432.0 1468 1 721 92 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1316.[MT7]-QGPEGLEVSFR.2y9_1.heavy 681.86 / 1033.53 22525.0 30.302849769592285 43 20 10 3 10 4.029615415031739 24.81626401044834 0.05150032043457031 3 0.9913978648786326 13.296808861133323 22525.0 83.53281329014973 0.0 - - - - - - - 322.0 45 3 RNASEH2C ribonuclease H2, subunit C 723 92 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1316.[MT7]-QGPEGLEVSFR.2b7_1.heavy 681.86 / 855.433 17055.0 30.302849769592285 43 20 10 3 10 4.029615415031739 24.81626401044834 0.05150032043457031 3 0.9913978648786326 13.296808861133323 17055.0 42.8317995526663 0.0 - - - - - - - 322.0 34 4 RNASEH2C ribonuclease H2, subunit C 725 92 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1316.[MT7]-QGPEGLEVSFR.2y10_1.heavy 681.86 / 1090.55 48912.0 30.302849769592285 43 20 10 3 10 4.029615415031739 24.81626401044834 0.05150032043457031 3 0.9913978648786326 13.296808861133323 48912.0 179.6511059954538 0.0 - - - - - - - 322.0 97 3 RNASEH2C ribonuclease H2, subunit C 727 92 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1316.[MT7]-QGPEGLEVSFR.2y7_1.heavy 681.86 / 807.436 22847.0 30.302849769592285 43 20 10 3 10 4.029615415031739 24.81626401044834 0.05150032043457031 3 0.9913978648786326 13.296808861133323 22847.0 29.39550838499254 0.0 - - - - - - - 322.0 45 4 RNASEH2C ribonuclease H2, subunit C 729 93 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1100.[MT7]-ELIYK[MT7].2b3_1.heavy 477.299 / 500.32 99926.0 25.30389976501465 50 20 10 10 10 17.67327129992356 5.658262033267861 0.0 3 0.998556826159481 32.48260131296466 99926.0 105.7237542662116 0.0 - - - - - - - 753.4285714285714 199 7 C2orf89;MAPK8;MAPK9;MAPK10 chromosome 2 open reading frame 89;mitogen-activated protein kinase 8;mitogen-activated protein kinase 9;mitogen-activated protein kinase 10 731 93 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1100.[MT7]-ELIYK[MT7].2y4_1.heavy 477.299 / 680.446 189010.0 25.30389976501465 50 20 10 10 10 17.67327129992356 5.658262033267861 0.0 3 0.998556826159481 32.48260131296466 189010.0 685.1930124385225 0.0 - - - - - - - 293.0 378 1 C2orf89;MAPK8;MAPK9;MAPK10 chromosome 2 open reading frame 89;mitogen-activated protein kinase 8;mitogen-activated protein kinase 9;mitogen-activated protein kinase 10 733 93 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1100.[MT7]-ELIYK[MT7].2b4_1.heavy 477.299 / 663.383 23443.0 25.30389976501465 50 20 10 10 10 17.67327129992356 5.658262033267861 0.0 3 0.998556826159481 32.48260131296466 23443.0 51.52659385665529 0.0 - - - - - - - 293.0 46 5 C2orf89;MAPK8;MAPK9;MAPK10 chromosome 2 open reading frame 89;mitogen-activated protein kinase 8;mitogen-activated protein kinase 9;mitogen-activated protein kinase 10 735 93 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1100.[MT7]-ELIYK[MT7].2y3_1.heavy 477.299 / 567.362 165567.0 25.30389976501465 50 20 10 10 10 17.67327129992356 5.658262033267861 0.0 3 0.998556826159481 32.48260131296466 165567.0 127.4933975974846 0.0 - - - - - - - 703.2 331 5 C2orf89;MAPK8;MAPK9;MAPK10 chromosome 2 open reading frame 89;mitogen-activated protein kinase 8;mitogen-activated protein kinase 9;mitogen-activated protein kinase 10 737 94 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1457.[MT7]-SPDPTPPALDQETSSLLR.2y6_1.heavy 1034.54 / 676.399 N/A N/A - - - - - - - - - 0.0 - - - - - - - ANAPC11 anaphase promoting complex subunit 11 739 94 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1457.[MT7]-SPDPTPPALDQETSSLLR.2b3_1.heavy 1034.54 / 444.221 N/A N/A - - - - - - - - - 0.0 - - - - - - - ANAPC11 anaphase promoting complex subunit 11 741 94 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1457.[MT7]-SPDPTPPALDQETSSLLR.2y8_1.heavy 1034.54 / 933.5 N/A N/A - - - - - - - - - 0.0 - - - - - - - ANAPC11 anaphase promoting complex subunit 11 743 94 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1457.[MT7]-SPDPTPPALDQETSSLLR.2b5_1.heavy 1034.54 / 642.321 N/A N/A - - - - - - - - - 0.0 - - - - - - - ANAPC11 anaphase promoting complex subunit 11 745 95 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1101.[MT7]-ENNYK[MT7].2b3_1.heavy 478.258 / 502.238 3890.0 15.003999710083008 34 20 0 10 4 8.631317754638033 11.5857164389835 0.0 7 0.9969608265732933 22.3807468760565 3890.0 36.498765432098764 0.0 - - - - - - - 254.57142857142858 7 7 UBE2U ubiquitin-conjugating enzyme E2U (putative) 747 95 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1101.[MT7]-ENNYK[MT7].2y4_1.heavy 478.258 / 682.364 10050.0 15.003999710083008 34 20 0 10 4 8.631317754638033 11.5857164389835 0.0 7 0.9969608265732933 22.3807468760565 10050.0 26.71090809891769 2.0 - - - - - - - 291.6 69 10 UBE2U ubiquitin-conjugating enzyme E2U (putative) 749 95 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1101.[MT7]-ENNYK[MT7].2b4_1.heavy 478.258 / 665.301 4539.0 15.003999710083008 34 20 0 10 4 8.631317754638033 11.5857164389835 0.0 7 0.9969608265732933 22.3807468760565 4539.0 15.410185185185185 4.0 - - - - - - - 324.0 43 11 UBE2U ubiquitin-conjugating enzyme E2U (putative) 751 95 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1101.[MT7]-ENNYK[MT7].2y3_1.heavy 478.258 / 568.321 4052.0 15.003999710083008 34 20 0 10 4 8.631317754638033 11.5857164389835 0.0 7 0.9969608265732933 22.3807468760565 4052.0 9.336799487782656 0.0 - - - - - - - 216.0 8 12 UBE2U ubiquitin-conjugating enzyme E2U (putative) 753 96 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1318.[MT7]-LIEDNEYTAR.2y8_1.heavy 684.35 / 997.422 60486.0 25.642499923706055 50 20 10 10 10 6.064803388893346 16.48858068229103 0.0 3 0.9916342428922555 13.483620228363987 60486.0 101.16095491651454 0.0 - - - - - - - 727.1428571428571 120 7 FYN;LCK;SRC;YES1 FYN oncogene related to SRC, FGR, YES;lymphocyte-specific protein tyrosine kinase;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 755 96 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1318.[MT7]-LIEDNEYTAR.2y9_1.heavy 684.35 / 1110.51 79051.0 25.642499923706055 50 20 10 10 10 6.064803388893346 16.48858068229103 0.0 3 0.9916342428922555 13.483620228363987 79051.0 114.9638540575865 0.0 - - - - - - - 299.0 158 6 FYN;LCK;SRC;YES1 FYN oncogene related to SRC, FGR, YES;lymphocyte-specific protein tyrosine kinase;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 757 96 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1318.[MT7]-LIEDNEYTAR.2y6_1.heavy 684.35 / 753.353 64678.0 25.642499923706055 50 20 10 10 10 6.064803388893346 16.48858068229103 0.0 3 0.9916342428922555 13.483620228363987 64678.0 44.99264564752916 0.0 - - - - - - - 812.5714285714286 129 7 FYN;LCK;SRC;YES1 FYN oncogene related to SRC, FGR, YES;lymphocyte-specific protein tyrosine kinase;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 759 96 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1318.[MT7]-LIEDNEYTAR.2y7_1.heavy 684.35 / 868.38 36831.0 25.642499923706055 50 20 10 10 10 6.064803388893346 16.48858068229103 0.0 3 0.9916342428922555 13.483620228363987 36831.0 33.090100987332576 0.0 - - - - - - - 299.0 73 3 FYN;LCK;SRC;YES1 FYN oncogene related to SRC, FGR, YES;lymphocyte-specific protein tyrosine kinase;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 761 97 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1102.[MT7]-VFYLK[MT7].2b3_1.heavy 479.304 / 554.31 41266.0 31.087900161743164 41 11 10 10 10 0.8282736780247044 60.5709750638198 0.0 3 0.8607510747546552 3.2680826209846767 41266.0 94.05450861014116 0.0 - - - - - - - 310.0 82 3 YWHAQ;SFN;YWHAB;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 763 97 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1102.[MT7]-VFYLK[MT7].2y4_1.heavy 479.304 / 714.431 174994.0 31.087900161743164 41 11 10 10 10 0.8282736780247044 60.5709750638198 0.0 3 0.8607510747546552 3.2680826209846767 174994.0 566.8826307253609 0.0 - - - - - - - 310.0 349 3 YWHAQ;SFN;YWHAB;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 765 97 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1102.[MT7]-VFYLK[MT7].2y3_1.heavy 479.304 / 567.362 93703.0 31.087900161743164 41 11 10 10 10 0.8282736780247044 60.5709750638198 0.0 3 0.8607510747546552 3.2680826209846767 93703.0 201.6474947750711 0.0 - - - - - - - 310.0 187 1 YWHAQ;SFN;YWHAB;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 767 97 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1102.[MT7]-VFYLK[MT7].2y1_1.heavy 479.304 / 291.215 82843.0 31.087900161743164 41 11 10 10 10 0.8282736780247044 60.5709750638198 0.0 3 0.8607510747546552 3.2680826209846767 82843.0 36.518926734561234 0.0 - - - - - - - 310.0 165 1 YWHAQ;SFN;YWHAB;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 769 98 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1458.[MT7]-FTLNPNPTGVQNPHIER.3y11_1.heavy 693.368 / 1247.65 26211.0 27.938100814819336 47 17 10 10 10 8.623650264049996 11.59601757238195 0.0 3 0.9796100585191256 8.628070188026308 26211.0 63.578377232548284 0.0 - - - - - - - 332.0 52 3 MAP2K4 mitogen-activated protein kinase kinase 4 771 98 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1458.[MT7]-FTLNPNPTGVQNPHIER.3b4_1.heavy 693.368 / 620.352 175845.0 27.938100814819336 47 17 10 10 10 8.623650264049996 11.59601757238195 0.0 3 0.9796100585191256 8.628070188026308 175845.0 173.99028126569561 0.0 - - - - - - - 332.0 351 1 MAP2K4 mitogen-activated protein kinase kinase 4 773 98 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1458.[MT7]-FTLNPNPTGVQNPHIER.3b3_1.heavy 693.368 / 506.31 46450.0 27.938100814819336 47 17 10 10 10 8.623650264049996 11.59601757238195 0.0 3 0.9796100585191256 8.628070188026308 46450.0 162.28404867208434 0.0 - - - - - - - 332.0 92 5 MAP2K4 mitogen-activated protein kinase kinase 4 775 98 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1458.[MT7]-FTLNPNPTGVQNPHIER.3y5_1.heavy 693.368 / 651.357 57067.0 27.938100814819336 47 17 10 10 10 8.623650264049996 11.59601757238195 0.0 3 0.9796100585191256 8.628070188026308 57067.0 95.05382306407698 0.0 - - - - - - - 332.0 114 3 MAP2K4 mitogen-activated protein kinase kinase 4 777 99 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1104.[MT7]-EVIIAK[MT7].2b3_1.heavy 480.82 / 486.304 72078.0 24.025800704956055 46 20 10 10 6 21.46812342916061 4.658068989121232 0.0 5 0.9983315805189248 30.209903852866475 72078.0 114.19201520912547 0.0 - - - - - - - 263.0 144 4 AKT3;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 2 779 99 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1104.[MT7]-EVIIAK[MT7].2y4_1.heavy 480.82 / 588.42 70237.0 24.025800704956055 46 20 10 10 6 21.46812342916061 4.658068989121232 0.0 5 0.9983315805189248 30.209903852866475 70237.0 153.55998098859314 0.0 - - - - - - - 638.7142857142857 140 7 AKT3;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 2 781 99 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1104.[MT7]-EVIIAK[MT7].2y5_1.heavy 480.82 / 687.489 51559.0 24.025800704956055 46 20 10 10 6 21.46812342916061 4.658068989121232 0.0 5 0.9983315805189248 30.209903852866475 51559.0 21.759705885481605 2.0 - - - - - - - 263.0 158 2 AKT3;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 2 783 99 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1104.[MT7]-EVIIAK[MT7].2b4_1.heavy 480.82 / 599.388 23149.0 24.025800704956055 46 20 10 10 6 21.46812342916061 4.658068989121232 0.0 5 0.9983315805189248 30.209903852866475 23149.0 27.09728136882129 0.0 - - - - - - - 591.75 46 8 AKT3;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 2 785 100 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1452.[MT7]-ADPDVTLAGQEAIFILAR.3y7_1.heavy 682.045 / 803.514 65056.0 43.11019992828369 40 14 10 6 10 2.4510684779686205 40.79853374103906 0.038799285888671875 3 0.9449291701966986 5.234654782943116 65056.0 208.33609283162417 0.0 - - - - - - - 289.77777777777777 130 9 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 787 100 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1452.[MT7]-ADPDVTLAGQEAIFILAR.3b6_1.heavy 682.045 / 743.369 54295.0 43.11019992828369 40 14 10 6 10 2.4510684779686205 40.79853374103906 0.038799285888671875 3 0.9449291701966986 5.234654782943116 54295.0 56.0292890404739 0.0 - - - - - - - 163.0 108 3 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 789 100 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1452.[MT7]-ADPDVTLAGQEAIFILAR.3b4_1.heavy 682.045 / 543.253 70274.0 43.11019992828369 40 14 10 6 10 2.4510684779686205 40.79853374103906 0.038799285888671875 3 0.9449291701966986 5.234654782943116 70274.0 219.5009298215565 0.0 - - - - - - - 349.2857142857143 140 7 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 791 100 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1452.[MT7]-ADPDVTLAGQEAIFILAR.3b5_1.heavy 682.045 / 642.321 46795.0 43.11019992828369 40 14 10 6 10 2.4510684779686205 40.79853374103906 0.038799285888671875 3 0.9449291701966986 5.234654782943116 46795.0 108.10567025104247 0.0 - - - - - - - 279.42857142857144 93 7 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 793 101 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1453.[MT7]-RTDDIPVWDQEFLK[MT7].4b7_1.heavy 513.277 / 941.517 3954.0 35.286598205566406 42 12 10 10 10 0.8319400700586578 74.32986083772923 0.0 3 0.8812726562032723 3.5456298461025297 3954.0 16.011138386662967 0.0 - - - - - - - 345.75 7 4 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 795 101 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1453.[MT7]-RTDDIPVWDQEFLK[MT7].4b4_1.heavy 513.277 / 632.312 9885.0 35.286598205566406 42 12 10 10 10 0.8319400700586578 74.32986083772923 0.0 3 0.8812726562032723 3.5456298461025297 9885.0 62.598938371914755 0.0 - - - - - - - 198.0 19 6 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 797 101 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1453.[MT7]-RTDDIPVWDQEFLK[MT7].4b5_1.heavy 513.277 / 745.396 16212.0 35.286598205566406 42 12 10 10 10 0.8319400700586578 74.32986083772923 0.0 3 0.8812726562032723 3.5456298461025297 16212.0 135.1 0.0 - - - - - - - 276.8 32 5 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 799 101 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1453.[MT7]-RTDDIPVWDQEFLK[MT7].4y3_1.heavy 513.277 / 551.367 15223.0 35.286598205566406 42 12 10 10 10 0.8319400700586578 74.32986083772923 0.0 3 0.8812726562032723 3.5456298461025297 15223.0 20.008002541803535 1.0 - - - - - - - 263.6666666666667 30 9 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 801 102 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1105.[MT7]-VC[CAM]AC[CAM]PGR.2y4_1.heavy 482.235 / 489.224 4050.0 16.31760025024414 31 13 4 10 4 1.1545615157359252 51.30769003703723 0.0 7 0.9018645169468271 3.9068974405395434 4050.0 3.359937780850328 5.0 - - - - - - - 289.5 16 6 TP53 tumor protein p53 803 102 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1105.[MT7]-VC[CAM]AC[CAM]PGR.2y5_1.heavy 482.235 / 560.261 9449.0 16.31760025024414 31 13 4 10 4 1.1545615157359252 51.30769003703723 0.0 7 0.9018645169468271 3.9068974405395434 9449.0 20.648343153708414 1.0 - - - - - - - 289.5 30 6 TP53 tumor protein p53 805 102 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1105.[MT7]-VC[CAM]AC[CAM]PGR.2b4_1.heavy 482.235 / 635.276 5014.0 16.31760025024414 31 13 4 10 4 1.1545615157359252 51.30769003703723 0.0 7 0.9018645169468271 3.9068974405395434 5014.0 26.595379049377918 1.0 - - - - - - - 257.3333333333333 37 6 TP53 tumor protein p53 807 102 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1105.[MT7]-VC[CAM]AC[CAM]PGR.2y6_1.heavy 482.235 / 720.292 N/A 16.31760025024414 31 13 4 10 4 1.1545615157359252 51.30769003703723 0.0 7 0.9018645169468271 3.9068974405395434 29697.0 19.17845231286015 1.0 - - - - - - - 337.75 104 4 TP53 tumor protein p53 809 103 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1454.[MT7]-QFDLAWQYGPC[CAM]TGITR.3b4_1.heavy 686.339 / 648.347 42292.0 36.29302501678467 39 13 10 6 10 1.1353963980536868 51.621983947924534 0.035099029541015625 3 0.9251528304276829 4.482578597764056 42292.0 24.490657087717835 0.0 - - - - - - - 237.66666666666666 84 3 POLD4 polymerase (DNA-directed), delta 4 811 103 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1454.[MT7]-QFDLAWQYGPC[CAM]TGITR.3b5_1.heavy 686.339 / 719.385 111350.0 36.29302501678467 39 13 10 6 10 1.1353963980536868 51.621983947924534 0.035099029541015625 3 0.9251528304276829 4.482578597764056 111350.0 185.59589692269202 0.0 - - - - - - - 237.66666666666666 222 3 POLD4 polymerase (DNA-directed), delta 4 813 103 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1454.[MT7]-QFDLAWQYGPC[CAM]TGITR.3b3_1.heavy 686.339 / 535.263 50500.0 36.29302501678467 39 13 10 6 10 1.1353963980536868 51.621983947924534 0.035099029541015625 3 0.9251528304276829 4.482578597764056 50500.0 66.96880246867057 0.0 - - - - - - - 669.125 101 8 POLD4 polymerase (DNA-directed), delta 4 815 103 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1454.[MT7]-QFDLAWQYGPC[CAM]TGITR.3y8_1.heavy 686.339 / 861.425 64062.0 36.29302501678467 39 13 10 6 10 1.1353963980536868 51.621983947924534 0.035099029541015625 3 0.9251528304276829 4.482578597764056 64062.0 149.1673091158393 0.0 - - - - - - - 312.25 128 4 POLD4 polymerase (DNA-directed), delta 4 817 104 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1106.[MT7]-QSVTIK[MT7].2y4_1.heavy 482.307 / 604.415 26797.0 19.54560089111328 45 15 10 10 10 2.835930078796775 26.96177747703266 0.0 3 0.9595050924089654 6.112031735786998 26797.0 82.24055216693418 0.0 - - - - - - - 285.625 53 8 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 819 104 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1106.[MT7]-QSVTIK[MT7].2y5_1.heavy 482.307 / 691.447 105320.0 19.54560089111328 45 15 10 10 10 2.835930078796775 26.96177747703266 0.0 3 0.9595050924089654 6.112031735786998 105320.0 81.78056500429538 0.0 - - - - - - - 747.8 210 10 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 821 104 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1106.[MT7]-QSVTIK[MT7].2y3_1.heavy 482.307 / 505.347 63981.0 19.54560089111328 45 15 10 10 10 2.835930078796775 26.96177747703266 0.0 3 0.9595050924089654 6.112031735786998 63981.0 81.29667161723131 0.0 - - - - - - - 1276.0 127 7 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 823 104 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1106.[MT7]-QSVTIK[MT7].2b5_1.heavy 482.307 / 673.4 10387.0 19.54560089111328 45 15 10 10 10 2.835930078796775 26.96177747703266 0.0 3 0.9595050924089654 6.112031735786998 10387.0 6.512766635859799 2.0 - - - - - - - 328.75 26 12 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 825 105 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1209.[MT7]-WSALYDVR.2b4_1.heavy 577.31 / 602.342 32307.0 33.030799865722656 41 11 10 10 10 1.5732543709082354 50.207657732536425 0.0 3 0.8540595395509132 3.190402407836836 32307.0 48.16078694817658 0.0 - - - - - - - 261.0 64 3 UBE2C ubiquitin-conjugating enzyme E2C 827 105 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1209.[MT7]-WSALYDVR.2b6_1.heavy 577.31 / 880.432 91972.0 33.030799865722656 41 11 10 10 10 1.5732543709082354 50.207657732536425 0.0 3 0.8540595395509132 3.190402407836836 91972.0 393.4263087490164 0.0 - - - - - - - 261.0 183 4 UBE2C ubiquitin-conjugating enzyme E2C 829 105 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1209.[MT7]-WSALYDVR.2y6_1.heavy 577.31 / 736.399 9901.0 33.030799865722656 41 11 10 10 10 1.5732543709082354 50.207657732536425 0.0 3 0.8540595395509132 3.190402407836836 9901.0 19.946740234940677 0.0 - - - - - - - 595.5714285714286 19 7 UBE2C ubiquitin-conjugating enzyme E2C 831 105 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1209.[MT7]-WSALYDVR.2y7_1.heavy 577.31 / 823.431 48461.0 33.030799865722656 41 11 10 10 10 1.5732543709082354 50.207657732536425 0.0 3 0.8540595395509132 3.190402407836836 48461.0 352.78122605363984 0.0 - - - - - - - 261.0 96 2 UBE2C ubiquitin-conjugating enzyme E2C 833 106 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1202.[MT7]-TPEEIHK[MT7].3y3_1.heavy 381.22 / 541.358 9229.0 17.984699249267578 46 16 10 10 10 4.482880657259868 22.30708502981303 0.0 3 0.9635567622189329 6.44504666224281 9229.0 55.97426016260162 0.0 - - - - - - - 307.5 18 6 LOC100506332 s-phase kinase-associated protein 1-like 835 106 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1202.[MT7]-TPEEIHK[MT7].3b4_1.heavy 381.22 / 601.295 73218.0 17.984699249267578 46 16 10 10 10 4.482880657259868 22.30708502981303 0.0 3 0.9635567622189329 6.44504666224281 73218.0 421.44995121951223 0.0 - - - - - - - 307.5 146 6 LOC100506332 s-phase kinase-associated protein 1-like 837 106 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1202.[MT7]-TPEEIHK[MT7].3b5_1.heavy 381.22 / 714.379 9639.0 17.984699249267578 46 16 10 10 10 4.482880657259868 22.30708502981303 0.0 3 0.9635567622189329 6.44504666224281 9639.0 38.242536585365855 0.0 - - - - - - - 287.0 19 5 LOC100506332 s-phase kinase-associated protein 1-like 839 106 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1202.[MT7]-TPEEIHK[MT7].3b3_1.heavy 381.22 / 472.252 35276.0 17.984699249267578 46 16 10 10 10 4.482880657259868 22.30708502981303 0.0 3 0.9635567622189329 6.44504666224281 35276.0 25.155191059429583 0.0 - - - - - - - 287.0 70 5 LOC100506332 s-phase kinase-associated protein 1-like 841 107 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1108.[MT7]-SEETSK[MT7].2b3_1.heavy 484.761 / 490.227 12191.0 12.650824785232544 48 20 10 8 10 21.49309770241796 4.652656466022116 0.019499778747558594 3 0.9974904495815563 24.630517779012795 12191.0 24.80772042845821 0.0 - - - - - - - 188.1304347826087 24 23 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 843 107 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1108.[MT7]-SEETSK[MT7].2y4_1.heavy 484.761 / 608.337 12368.0 12.650824785232544 48 20 10 8 10 21.49309770241796 4.652656466022116 0.019499778747558594 3 0.9974904495815563 24.630517779012795 12368.0 28.00301886792453 0.0 - - - - - - - 180.25 24 24 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 845 107 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1108.[MT7]-SEETSK[MT7].2y5_1.heavy 484.761 / 737.38 15637.0 12.650824785232544 48 20 10 8 10 21.49309770241796 4.652656466022116 0.019499778747558594 3 0.9974904495815563 24.630517779012795 15637.0 31.00194974576373 0.0 - - - - - - - 136.8 31 20 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 847 107 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1108.[MT7]-SEETSK[MT7].2b5_1.heavy 484.761 / 678.306 1325.0 12.650824785232544 48 20 10 8 10 21.49309770241796 4.652656466022116 0.019499778747558594 3 0.9974904495815563 24.630517779012795 1325.0 -1.8096751412429375 2.0 - - - - - - - 139.19230769230768 4 26 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 849 108 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1203.[MT7]-RAPTTATQR.2b8_1.heavy 573.329 / 971.539 5756.0 13.288399696350098 37 17 2 10 8 3.0771024513247314 32.49810546832743 0.0 4 0.979364329783733 8.576368025592293 5756.0 28.779999999999998 1.0 - - - - - - - 141.25 11 16 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 851 108 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1203.[MT7]-RAPTTATQR.2y8_1.heavy 573.329 / 845.448 16140.0 13.288399696350098 37 17 2 10 8 3.0771024513247314 32.49810546832743 0.0 4 0.979364329783733 8.576368025592293 16140.0 47.61061946902654 0.0 - - - - - - - 201.71428571428572 32 14 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 853 108 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1203.[MT7]-RAPTTATQR.2b6_1.heavy 573.329 / 742.433 3386.0 13.288399696350098 37 17 2 10 8 3.0771024513247314 32.49810546832743 0.0 4 0.979364329783733 8.576368025592293 3386.0 3.9952802359882 1.0 - - - - - - - 176.5625 22 16 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 855 108 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1203.[MT7]-RAPTTATQR.2y7_1.heavy 573.329 / 774.41 9030.0 13.288399696350098 37 17 2 10 8 3.0771024513247314 32.49810546832743 0.0 4 0.979364329783733 8.576368025592293 9030.0 45.28318584070796 1.0 - - - - - - - 192.76470588235293 77 17 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 857 109 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1109.[MT7]-EYIQK[MT7].2b3_1.heavy 484.786 / 550.299 52085.0 20.261000633239746 43 18 10 5 10 4.970734667705511 20.117750530860654 0.04039955139160156 3 0.9859175107222762 10.387515190232524 52085.0 78.42225809022796 0.0 - - - - - - - 301.42857142857144 104 7 FGD2;UBE2H FYVE, RhoGEF and PH domain containing 2;ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 859 109 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1109.[MT7]-EYIQK[MT7].2y4_1.heavy 484.786 / 695.421 127787.0 20.261000633239746 43 18 10 5 10 4.970734667705511 20.117750530860654 0.04039955139160156 3 0.9859175107222762 10.387515190232524 127787.0 195.51449368241265 0.0 - - - - - - - 813.0 255 7 FGD2;UBE2H FYVE, RhoGEF and PH domain containing 2;ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 861 109 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1109.[MT7]-EYIQK[MT7].2b4_1.heavy 484.786 / 678.358 28046.0 20.261000633239746 43 18 10 5 10 4.970734667705511 20.117750530860654 0.04039955139160156 3 0.9859175107222762 10.387515190232524 28046.0 65.42057321690334 0.0 - - - - - - - 331.57142857142856 56 7 FGD2;UBE2H FYVE, RhoGEF and PH domain containing 2;ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 863 109 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1109.[MT7]-EYIQK[MT7].2y3_1.heavy 484.786 / 532.357 68111.0 20.261000633239746 43 18 10 5 10 4.970734667705511 20.117750530860654 0.04039955139160156 3 0.9859175107222762 10.387515190232524 68111.0 98.72815909735789 0.0 - - - - - - - 1174.5714285714287 136 7 FGD2;UBE2H FYVE, RhoGEF and PH domain containing 2;ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 865 110 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1459.[MT7]-IYDITNVLEGIGLIEK[MT7].3b6_1.heavy 693.404 / 864.458 118470.0 47.41579818725586 41 11 10 10 10 1.6618838275763501 48.05490386092974 0.0 3 0.8558890584870381 3.2111071788953818 118470.0 257.65135582010583 0.0 - - - - - - - 228.0 236 8 E2F4 E2F transcription factor 4, p107/p130-binding 867 110 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1459.[MT7]-IYDITNVLEGIGLIEK[MT7].3b3_1.heavy 693.404 / 536.284 84317.0 47.41579818725586 41 11 10 10 10 1.6618838275763501 48.05490386092974 0.0 3 0.8558890584870381 3.2111071788953818 84317.0 196.80505903355066 0.0 - - - - - - - 215.25 168 8 E2F4 E2F transcription factor 4, p107/p130-binding 869 110 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1459.[MT7]-IYDITNVLEGIGLIEK[MT7].3b7_1.heavy 693.404 / 963.527 114518.0 47.41579818725586 41 11 10 10 10 1.6618838275763501 48.05490386092974 0.0 3 0.8558890584870381 3.2111071788953818 114518.0 367.4197672479982 0.0 - - - - - - - 213.88888888888889 229 9 E2F4 E2F transcription factor 4, p107/p130-binding 871 110 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1459.[MT7]-IYDITNVLEGIGLIEK[MT7].3y5_1.heavy 693.404 / 703.447 198632.0 47.41579818725586 41 11 10 10 10 1.6618838275763501 48.05490386092974 0.0 3 0.8558890584870381 3.2111071788953818 198632.0 398.5444192825112 0.0 - - - - - - - 265.75 397 8 E2F4 E2F transcription factor 4, p107/p130-binding 873 111 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1314.[MT7]-DYLSSFPFQI.2b3_1.heavy 680.849 / 536.284 22079.0 47.00284957885742 34 8 10 6 10 0.4981348010406954 100.37443658933444 0.03910064697265625 3 0.7759910380989687 2.5572157917630647 22079.0 41.00429900859699 0.0 - - - - - - - 279.3333333333333 44 6 SOCS1 suppressor of cytokine signaling 1 875 111 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1314.[MT7]-DYLSSFPFQI.2b4_1.heavy 680.849 / 623.316 14292.0 47.00284957885742 34 8 10 6 10 0.4981348010406954 100.37443658933444 0.03910064697265625 3 0.7759910380989687 2.5572157917630647 14292.0 17.5706463878327 1.0 - - - - - - - 344.9166666666667 29 12 SOCS1 suppressor of cytokine signaling 1 877 111 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1314.[MT7]-DYLSSFPFQI.2b6_1.heavy 680.849 / 857.416 31246.0 47.00284957885742 34 8 10 6 10 0.4981348010406954 100.37443658933444 0.03910064697265625 3 0.7759910380989687 2.5572157917630647 31246.0 49.239847567312886 0.0 - - - - - - - 1318.375 62 8 SOCS1 suppressor of cytokine signaling 1 879 111 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1314.[MT7]-DYLSSFPFQI.2b5_1.heavy 680.849 / 710.348 23361.0 47.00284957885742 34 8 10 6 10 0.4981348010406954 100.37443658933444 0.03910064697265625 3 0.7759910380989687 2.5572157917630647 23361.0 63.88905979775551 0.0 - - - - - - - 372.44444444444446 46 9 SOCS1 suppressor of cytokine signaling 1 881 112 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1510.[MT7]-C[CAM]YDIIPETLLELGEIPTLK[MT7].4y4_1.heavy 627.1 / 602.399 N/A N/A - - - - - - - - - 0.0 - - - - - - - SKP2 S-phase kinase-associated protein 2 (p45) 883 112 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1510.[MT7]-C[CAM]YDIIPETLLELGEIPTLK[MT7].4b4_1.heavy 627.1 / 696.314 N/A N/A - - - - - - - - - 0.0 - - - - - - - SKP2 S-phase kinase-associated protein 2 (p45) 885 112 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1510.[MT7]-C[CAM]YDIIPETLLELGEIPTLK[MT7].4b5_1.heavy 627.1 / 809.398 N/A N/A - - - - - - - - - 0.0 - - - - - - - SKP2 S-phase kinase-associated protein 2 (p45) 887 112 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1510.[MT7]-C[CAM]YDIIPETLLELGEIPTLK[MT7].4b3_1.heavy 627.1 / 583.23 N/A N/A - - - - - - - - - 0.0 - - - - - - - SKP2 S-phase kinase-associated protein 2 (p45) 889 113 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1515.[MT7]-LNLSGC[CAM]SGFSEFALQTLLSSC[CAM]SR.3y6_1.heavy 893.439 / 709.33 11641.0 44.31687355041504 40 14 10 6 10 2.3113319045958316 34.165254503961926 0.03929901123046875 3 0.9455164497428541 5.263054262521691 11641.0 56.27277695145486 0.0 - - - - - - - 282.61538461538464 23 13 SKP2 S-phase kinase-associated protein 2 (p45) 891 113 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1515.[MT7]-LNLSGC[CAM]SGFSEFALQTLLSSC[CAM]SR.3b8_1.heavy 893.439 / 933.458 5208.0 44.31687355041504 40 14 10 6 10 2.3113319045958316 34.165254503961926 0.03929901123046875 3 0.9455164497428541 5.263054262521691 5208.0 40.82485933503837 0.0 - - - - - - - 289.22222222222223 10 9 SKP2 S-phase kinase-associated protein 2 (p45) 893 113 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1515.[MT7]-LNLSGC[CAM]SGFSEFALQTLLSSC[CAM]SR.3y5_1.heavy 893.439 / 596.246 15930.0 44.31687355041504 40 14 10 6 10 2.3113319045958316 34.165254503961926 0.03929901123046875 3 0.9455164497428541 5.263054262521691 15930.0 40.27024844720497 0.0 - - - - - - - 722.2857142857143 31 7 SKP2 S-phase kinase-associated protein 2 (p45) 895 113 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1515.[MT7]-LNLSGC[CAM]SGFSEFALQTLLSSC[CAM]SR.3y9_1.heavy 893.439 / 1051.52 6127.0 44.31687355041504 40 14 10 6 10 2.3113319045958316 34.165254503961926 0.03929901123046875 3 0.9455164497428541 5.263054262521691 6127.0 12.926585878079237 0.0 - - - - - - - 229.71428571428572 12 14 SKP2 S-phase kinase-associated protein 2 (p45) 897 114 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1518.[MT7]-ILLSVVSMLAEPNDESGANVDASK[MT7].4y4_1.heavy 687.615 / 564.311 15363.0 45.894798278808594 41 13 10 10 8 3.244796798079028 30.818570845238014 0.0 4 0.9029100032663651 3.9282312709181126 15363.0 30.672656250000003 0.0 - - - - - - - 696.8888888888889 30 9 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 899 114 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1518.[MT7]-ILLSVVSMLAEPNDESGANVDASK[MT7].4b4_1.heavy 687.615 / 571.394 4225.0 45.894798278808594 41 13 10 10 8 3.244796798079028 30.818570845238014 0.0 4 0.9029100032663651 3.9282312709181126 4225.0 5.924479166666667 1.0 - - - - - - - 213.33333333333334 9 9 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 901 114 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1518.[MT7]-ILLSVVSMLAEPNDESGANVDASK[MT7].4b5_1.heavy 687.615 / 670.462 4481.0 45.894798278808594 41 13 10 10 8 3.244796798079028 30.818570845238014 0.0 4 0.9029100032663651 3.9282312709181126 4481.0 13.372984375 1.0 - - - - - - - 268.8 9 10 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 903 114 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1518.[MT7]-ILLSVVSMLAEPNDESGANVDASK[MT7].4b6_1.heavy 687.615 / 769.53 4993.0 45.894798278808594 41 13 10 10 8 3.244796798079028 30.818570845238014 0.0 4 0.9029100032663651 3.9282312709181126 4993.0 16.3442734375 0.0 - - - - - - - 621.7142857142857 9 7 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 905 115 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1509.[MT7]-LLQELSHPNIIGLLDAFGHK[MT7].4y4_1.heavy 626.612 / 632.364 28461.0 45.50400161743164 43 13 10 10 10 1.168781895047436 57.03944161794271 0.0 3 0.9284493309377122 4.585971601309802 28461.0 161.08441885862197 0.0 - - - - - - - 237.11111111111111 56 9 CDK7 cyclin-dependent kinase 7 907 115 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1509.[MT7]-LLQELSHPNIIGLLDAFGHK[MT7].4b4_1.heavy 626.612 / 628.379 17931.0 45.50400161743164 43 13 10 10 10 1.168781895047436 57.03944161794271 0.0 3 0.9284493309377122 4.585971601309802 17931.0 53.60229728394859 0.0 - - - - - - - 267.0 35 8 CDK7 cyclin-dependent kinase 7 909 115 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1509.[MT7]-LLQELSHPNIIGLLDAFGHK[MT7].4b6_1.heavy 626.612 / 828.495 15796.0 45.50400161743164 43 13 10 10 10 1.168781895047436 57.03944161794271 0.0 3 0.9284493309377122 4.585971601309802 15796.0 64.75021092055984 0.0 - - - - - - - 213.5 31 6 CDK7 cyclin-dependent kinase 7 911 115 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1509.[MT7]-LLQELSHPNIIGLLDAFGHK[MT7].4b9_2.heavy 626.612 / 588.828 24192.0 45.50400161743164 43 13 10 10 10 1.168781895047436 57.03944161794271 0.0 3 0.9284493309377122 4.585971601309802 24192.0 112.4616393442623 0.0 - - - - - - - 284.57142857142856 48 7 CDK7 cyclin-dependent kinase 7 913 116 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A669.[MT7]-QNFTQLPLHK[MT7].3b4_1.heavy 505.296 / 635.327 25183.0 26.769100189208984 44 14 10 10 10 1.8830141829352354 42.85591482234667 0.0 3 0.9463955999690071 5.30643428136459 25183.0 43.27643366894093 0.0 - - - - - - - 319.0 50 4 DBF4 DBF4 homolog (S. cerevisiae) 915 116 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A669.[MT7]-QNFTQLPLHK[MT7].3b5_1.heavy 505.296 / 763.385 79375.0 26.769100189208984 44 14 10 10 10 1.8830141829352354 42.85591482234667 0.0 3 0.9463955999690071 5.30643428136459 79375.0 281.83906509312186 0.0 - - - - - - - 319.0 158 4 DBF4 DBF4 homolog (S. cerevisiae) 917 116 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A669.[MT7]-QNFTQLPLHK[MT7].3b3_1.heavy 505.296 / 534.279 43353.0 26.769100189208984 44 14 10 10 10 1.8830141829352354 42.85591482234667 0.0 3 0.9463955999690071 5.30643428136459 43353.0 50.01412435981873 0.0 - - - - - - - 319.0 86 4 DBF4 DBF4 homolog (S. cerevisiae) 919 116 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A669.[MT7]-QNFTQLPLHK[MT7].3y4_1.heavy 505.296 / 638.411 119540.0 26.769100189208984 44 14 10 10 10 1.8830141829352354 42.85591482234667 0.0 3 0.9463955999690071 5.30643428136459 119540.0 240.42418273256564 0.0 - - - - - - - 319.0 239 4 DBF4 DBF4 homolog (S. cerevisiae) 921 117 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1503.[MT7]-VDQGTLFELILAANYLDIK[MT7].4b8_1.heavy 606.846 / 1034.53 N/A N/A - - - - - - - - - 0.0 - - - - - - - LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 923 117 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1503.[MT7]-VDQGTLFELILAANYLDIK[MT7].4b7_1.heavy 606.846 / 905.485 N/A N/A - - - - - - - - - 0.0 - - - - - - - LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 925 117 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1503.[MT7]-VDQGTLFELILAANYLDIK[MT7].4b5_1.heavy 606.846 / 645.332 N/A N/A - - - - - - - - - 0.0 - - - - - - - LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 927 117 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1503.[MT7]-VDQGTLFELILAANYLDIK[MT7].4y3_1.heavy 606.846 / 519.326 N/A N/A - - - - - - - - - 0.0 - - - - - - - LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 929 118 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1504.[MT7]-DQNLGDVQESTLIEILVSSAR.3b6_1.heavy 811.098 / 787.37 29075.0 45.979801177978516 47 17 10 10 10 10.720152447059426 9.32822555405267 0.0 3 0.9757608048896376 7.910830917210691 29075.0 62.51916223363365 0.0 - - - - - - - 297.6666666666667 58 6 STAG3 stromal antigen 3 931 118 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1504.[MT7]-DQNLGDVQESTLIEILVSSAR.3b3_1.heavy 811.098 / 502.238 6759.0 45.979801177978516 47 17 10 10 10 10.720152447059426 9.32822555405267 0.0 3 0.9757608048896376 7.910830917210691 6759.0 3.9190209853841638 1.0 - - - - - - - 255.16666666666666 18 6 STAG3 stromal antigen 3 933 118 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1504.[MT7]-DQNLGDVQESTLIEILVSSAR.3y8_1.heavy 811.098 / 874.499 15813.0 45.979801177978516 47 17 10 10 10 10.720152447059426 9.32822555405267 0.0 3 0.9757608048896376 7.910830917210691 15813.0 63.663682912579574 0.0 - - - - - - - 291.7142857142857 31 7 STAG3 stromal antigen 3 935 118 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1504.[MT7]-DQNLGDVQESTLIEILVSSAR.3b7_1.heavy 811.098 / 886.439 15047.0 45.979801177978516 47 17 10 10 10 10.720152447059426 9.32822555405267 0.0 3 0.9757608048896376 7.910830917210691 15047.0 35.36233606826555 0.0 - - - - - - - 255.36363636363637 30 11 STAG3 stromal antigen 3 937 119 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1505.[MT7]-RQATTIIADNIIFLSDQTK[MT7].4y5_1.heavy 609.848 / 722.38 22314.0 38.1491756439209 33 7 10 6 10 0.5024035355933459 96.76104762483351 0.03189849853515625 3 0.7343460118767742 2.3392898414278056 22314.0 49.07297693578063 0.0 - - - - - - - 326.0 44 10 SSBP1 single-stranded DNA binding protein 1 939 119 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1505.[MT7]-RQATTIIADNIIFLSDQTK[MT7].4b9_1.heavy 609.848 / 1114.63 2769.0 38.1491756439209 33 7 10 6 10 0.5024035355933459 96.76104762483351 0.03189849853515625 3 0.7343460118767742 2.3392898414278056 2769.0 16.987730061349694 0.0 - - - - - - - 326.0 5 3 SSBP1 single-stranded DNA binding protein 1 941 119 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1505.[MT7]-RQATTIIADNIIFLSDQTK[MT7].4b10_2.heavy 609.848 / 614.842 44628.0 38.1491756439209 33 7 10 6 10 0.5024035355933459 96.76104762483351 0.03189849853515625 3 0.7343460118767742 2.3392898414278056 44628.0 58.22833057317122 0.0 - - - - - - - 326.0 89 11 SSBP1 single-stranded DNA binding protein 1 943 119 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1505.[MT7]-RQATTIIADNIIFLSDQTK[MT7].4b6_1.heavy 609.848 / 815.486 6352.0 38.1491756439209 33 7 10 6 10 0.5024035355933459 96.76104762483351 0.03189849853515625 3 0.7343460118767742 2.3392898414278056 6352.0 14.467002909211498 0.0 - - - - - - - 234.3125 12 16 SSBP1 single-stranded DNA binding protein 1 945 120 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A664.[MT7]-FLMEC[CAM]R.2b3_1.heavy 500.247 / 536.302 6333.0 28.707799911499023 41 18 10 3 10 5.373974107764387 18.608202792700233 0.05139923095703125 3 0.9887572800969283 11.628372768411237 6333.0 12.789336836581708 1.0 - - - - - - - 333.0 15 3 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 947 120 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A664.[MT7]-FLMEC[CAM]R.2y4_1.heavy 500.247 / 595.233 15667.0 28.707799911499023 41 18 10 3 10 5.373974107764387 18.608202792700233 0.05139923095703125 3 0.9887572800969283 11.628372768411237 15667.0 54.471027722383454 1.0 - - - - - - - 333.0 31 5 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 949 120 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A664.[MT7]-FLMEC[CAM]R.2y5_1.heavy 500.247 / 708.317 30000.0 28.707799911499023 41 18 10 3 10 5.373974107764387 18.608202792700233 0.05139923095703125 3 0.9887572800969283 11.628372768411237 30000.0 172.88288288288288 0.0 - - - - - - - 333.0 60 5 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 951 120 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A664.[MT7]-FLMEC[CAM]R.2b4_1.heavy 500.247 / 665.345 10000.0 28.707799911499023 41 18 10 3 10 5.373974107764387 18.608202792700233 0.05139923095703125 3 0.9887572800969283 11.628372768411237 10000.0 56.75675675675676 0.0 - - - - - - - 333.0 20 4 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 953 121 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A663.[MT7]-FFTPAIR.2b3_1.heavy 498.293 / 540.294 89183.0 32.29999923706055 45 15 10 10 10 4.637770346974085 21.56208533810758 0.0 3 0.9570043619591695 5.930368680469615 89183.0 148.96130390074612 0.0 - - - - - - - 274.0 178 1 RNASEH2C ribonuclease H2, subunit C 955 121 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A663.[MT7]-FFTPAIR.2y5_1.heavy 498.293 / 557.341 96569.0 32.29999923706055 45 15 10 10 10 4.637770346974085 21.56208533810758 0.0 3 0.9570043619591695 5.930368680469615 96569.0 379.80011361893054 0.0 - - - - - - - 274.0 193 4 RNASEH2C ribonuclease H2, subunit C 957 121 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A663.[MT7]-FFTPAIR.2b2_1.heavy 498.293 / 439.246 83711.0 32.29999923706055 45 15 10 10 10 4.637770346974085 21.56208533810758 0.0 3 0.9570043619591695 5.930368680469615 83711.0 70.38105359639098 0.0 - - - - - - - 615.5 167 4 RNASEH2C ribonuclease H2, subunit C 959 121 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A663.[MT7]-FFTPAIR.2y1_1.heavy 498.293 / 175.119 143896.0 32.29999923706055 45 15 10 10 10 4.637770346974085 21.56208533810758 0.0 3 0.9570043619591695 5.930368680469615 143896.0 148.7469908130575 0.0 - - - - - - - 684.0 287 2 RNASEH2C ribonuclease H2, subunit C 961 122 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1500.[MT7]-WEVLIIGPPDTLYEGGVFK[MT7].3y7_1.heavy 807.782 / 943.5 20478.0 44.89910125732422 47 17 10 10 10 3.135590339552171 31.89192119219315 0.0 3 0.9729599142578272 7.48815518937663 20478.0 20.701577461791125 0.0 - - - - - - - 296.5 40 4 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 963 122 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1500.[MT7]-WEVLIIGPPDTLYEGGVFK[MT7].3b4_1.heavy 807.782 / 672.384 62176.0 44.89910125732422 47 17 10 10 10 3.135590339552171 31.89192119219315 0.0 3 0.9729599142578272 7.48815518937663 62176.0 37.697999343262644 0.0 - - - - - - - 445.0 124 2 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 965 122 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1500.[MT7]-WEVLIIGPPDTLYEGGVFK[MT7].3b5_1.heavy 807.782 / 785.468 30123.0 44.89910125732422 47 17 10 10 10 3.135590339552171 31.89192119219315 0.0 3 0.9729599142578272 7.48815518937663 30123.0 19.504172574047267 1.0 - - - - - - - 742.0 64 7 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 967 122 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1500.[MT7]-WEVLIIGPPDTLYEGGVFK[MT7].3b3_1.heavy 807.782 / 559.3 33536.0 44.89910125732422 47 17 10 10 10 3.135590339552171 31.89192119219315 0.0 3 0.9729599142578272 7.48815518937663 33536.0 43.42234988494762 0.0 - - - - - - - 370.75 67 4 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 969 123 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 CH10_ECO24.SAGGIVLTGSAAAK.2y7.peptide 601.84 / 605.33 638734.0 24.1028995513916 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 638734.0 396.20195301856603 0.0 - - - - - - - 7119.0 1277 1 971 123 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 CH10_ECO24.SAGGIVLTGSAAAK.2y8.peptide 601.84 / 718.41 996127.0 24.1028995513916 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 996127.0 946.4531725658045 0.0 - - - - - - - 10547.0 1992 1 973 123 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 CH10_ECO24.SAGGIVLTGSAAAK.2y9.peptide 601.84 / 817.48 959759.0 24.1028995513916 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 959759.0 688.4570402833843 0.0 - - - - - - - 10284.0 1919 1 975 124 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1502.[MT7]-VDQGTLFELILAANYLDIK[MT7].3b9_1.heavy 808.792 / 1147.61 38775.0 50.3922004699707 50 20 10 10 10 3.717032756095303 20.822729419752424 0.0 3 0.9934543999395646 15.245808442068444 38775.0 53.459289590620756 0.0 - - - - - - - 746.4285714285714 77 7 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 977 124 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1502.[MT7]-VDQGTLFELILAANYLDIK[MT7].3b5_1.heavy 808.792 / 645.332 33687.0 50.3922004699707 50 20 10 10 10 3.717032756095303 20.822729419752424 0.0 3 0.9934543999395646 15.245808442068444 33687.0 168.36322096270413 0.0 - - - - - - - 733.25 67 8 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 979 124 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1502.[MT7]-VDQGTLFELILAANYLDIK[MT7].3b8_1.heavy 808.792 / 1034.53 81033.0 50.3922004699707 50 20 10 10 10 3.717032756095303 20.822729419752424 0.0 3 0.9934543999395646 15.245808442068444 81033.0 76.76915008661871 0.0 - - - - - - - 1237.3333333333333 162 9 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 981 124 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1502.[MT7]-VDQGTLFELILAANYLDIK[MT7].3b7_1.heavy 808.792 / 905.485 28279.0 50.3922004699707 50 20 10 10 10 3.717032756095303 20.822729419752424 0.0 3 0.9934543999395646 15.245808442068444 28279.0 192.55568663686043 0.0 - - - - - - - 674.4285714285714 56 7 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 983 125 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A667.[MT7]-LLSTSAK[MT7].2y4_1.heavy 504.321 / 550.332 36703.0 23.1299991607666 42 12 10 10 10 2.8840702564069542 30.429465158441122 0.0 3 0.8904375288059789 3.6938913786292975 36703.0 47.49366749421781 0.0 - - - - - - - 367.0 73 2 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 985 125 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A667.[MT7]-LLSTSAK[MT7].2y5_1.heavy 504.321 / 637.364 87597.0 23.1299991607666 42 12 10 10 10 2.8840702564069542 30.429465158441122 0.0 3 0.8904375288059789 3.6938913786292975 87597.0 183.82685410807485 0.0 - - - - - - - 384.42857142857144 175 7 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 987 125 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A667.[MT7]-LLSTSAK[MT7].2y6_1.heavy 504.321 / 750.448 87841.0 23.1299991607666 42 12 10 10 10 2.8840702564069542 30.429465158441122 0.0 3 0.8904375288059789 3.6938913786292975 87841.0 58.53588878231486 0.0 - - - - - - - 428.0 175 4 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 989 125 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A667.[MT7]-LLSTSAK[MT7].2y1_1.heavy 504.321 / 291.215 35724.0 23.1299991607666 42 12 10 10 10 2.8840702564069542 30.429465158441122 0.0 3 0.8904375288059789 3.6938913786292975 35724.0 7.189077913912278 1.0 - - - - - - - 1223.0 75 1 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 991 126 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A665.[MT7]-TQNINK[MT7].2y4_1.heavy 503.3 / 632.385 20147.0 15.510600090026855 46 16 10 10 10 2.6055955386659866 30.457740176613605 0.0 3 0.9676693150252857 6.845069033241785 20147.0 143.90714285714284 0.0 - - - - - - - 262.5 40 10 RNASEH1 ribonuclease H1 993 126 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A665.[MT7]-TQNINK[MT7].2y5_1.heavy 503.3 / 760.443 21548.0 15.510600090026855 46 16 10 10 10 2.6055955386659866 30.457740176613605 0.0 3 0.9676693150252857 6.845069033241785 21548.0 65.21925738740575 0.0 - - - - - - - 196.875 43 8 RNASEH1 ribonuclease H1 995 126 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A665.[MT7]-TQNINK[MT7].2b4_1.heavy 503.3 / 601.343 12439.0 15.510600090026855 46 16 10 10 10 2.6055955386659866 30.457740176613605 0.0 3 0.9676693150252857 6.845069033241785 12439.0 15.621099930920323 0.0 - - - - - - - 626.0 24 7 RNASEH1 ribonuclease H1 997 126 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A665.[MT7]-TQNINK[MT7].2y3_1.heavy 503.3 / 518.342 10687.0 15.510600090026855 46 16 10 10 10 2.6055955386659866 30.457740176613605 0.0 3 0.9676693150252857 6.845069033241785 10687.0 17.23004559696194 0.0 - - - - - - - 233.33333333333334 21 6 RNASEH1 ribonuclease H1 999 127 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A660.[MT7]-SIEEIVR.2y4_1.heavy 495.291 / 516.314 14822.0 27.298099517822266 46 16 10 10 10 2.608373834019522 30.432734570346724 0.0 3 0.963030854501549 6.398755911311235 14822.0 18.457160212604403 0.0 - - - - - - - 329.0 29 4 FEN1 flap structure-specific endonuclease 1 1001 127 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A660.[MT7]-SIEEIVR.2y5_1.heavy 495.291 / 645.357 23056.0 27.298099517822266 46 16 10 10 10 2.608373834019522 30.432734570346724 0.0 3 0.963030854501549 6.398755911311235 23056.0 45.27190283400809 0.0 - - - - - - - 329.0 46 5 FEN1 flap structure-specific endonuclease 1 1003 127 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A660.[MT7]-SIEEIVR.2b4_1.heavy 495.291 / 603.311 27667.0 27.298099517822266 46 16 10 10 10 2.608373834019522 30.432734570346724 0.0 3 0.963030854501549 6.398755911311235 27667.0 29.218615872021292 1.0 - - - - - - - 329.0 65 4 FEN1 flap structure-specific endonuclease 1 1005 127 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A660.[MT7]-SIEEIVR.2y6_1.heavy 495.291 / 758.441 29972.0 27.298099517822266 46 16 10 10 10 2.608373834019522 30.432734570346724 0.0 3 0.963030854501549 6.398755911311235 29972.0 65.39616388006493 0.0 - - - - - - - 329.0 59 4 FEN1 flap structure-specific endonuclease 1 1007 128 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A577.[MT7]-LDIVR.2b3_1.heavy 380.246 / 486.304 35409.0 26.26180076599121 40 16 6 10 8 2.676994768964964 29.80857179721625 0.0 4 0.9687052534136408 6.958049288167062 35409.0 70.02476307527542 0.0 - - - - - - - 316.0 70 4 FAM92A1;CCNB1IP1;VHL;KIAA0195 family with sequence similarity 92, member A1;cyclin B1 interacting protein 1;von Hippel-Lindau tumor suppressor;KIAA0195 1009 128 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A577.[MT7]-LDIVR.2y4_1.heavy 380.246 / 502.298 56275.0 26.26180076599121 40 16 6 10 8 2.676994768964964 29.80857179721625 0.0 4 0.9687052534136408 6.958049288167062 56275.0 56.05510158927781 1.0 - - - - - - - 316.0 168 2 FAM92A1;CCNB1IP1;VHL;KIAA0195 family with sequence similarity 92, member A1;cyclin B1 interacting protein 1;von Hippel-Lindau tumor suppressor;KIAA0195 1011 128 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A577.[MT7]-LDIVR.2b4_1.heavy 380.246 / 585.373 14227.0 26.26180076599121 40 16 6 10 8 2.676994768964964 29.80857179721625 0.0 4 0.9687052534136408 6.958049288167062 14227.0 32.294763258618104 0.0 - - - - - - - 316.0 28 4 FAM92A1;CCNB1IP1;VHL;KIAA0195 family with sequence similarity 92, member A1;cyclin B1 interacting protein 1;von Hippel-Lindau tumor suppressor;KIAA0195 1013 128 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A577.[MT7]-LDIVR.2y3_1.heavy 380.246 / 387.271 40151.0 26.26180076599121 40 16 6 10 8 2.676994768964964 29.80857179721625 0.0 4 0.9687052534136408 6.958049288167062 40151.0 143.99053680695036 0.0 - - - - - - - 316.0 80 2 FAM92A1;CCNB1IP1;VHL;KIAA0195 family with sequence similarity 92, member A1;cyclin B1 interacting protein 1;von Hippel-Lindau tumor suppressor;KIAA0195 1015 129 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A579.[MT7]-AIFDR.2y4_1.heavy 383.222 / 550.298 18463.0 24.80389976501465 47 17 10 10 10 2.25164640030463 34.86971869595792 0.0 3 0.973123675933183 7.511037323687534 18463.0 31.638474178403754 0.0 - - - - - - - 284.0 36 6 ORC6 origin recognition complex, subunit 6 1017 129 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A579.[MT7]-AIFDR.2b4_1.heavy 383.222 / 591.326 20735.0 24.80389976501465 47 17 10 10 10 2.25164640030463 34.86971869595792 0.0 3 0.973123675933183 7.511037323687534 20735.0 34.55833333333333 0.0 - - - - - - - 284.0 41 6 ORC6 origin recognition complex, subunit 6 1019 129 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A579.[MT7]-AIFDR.2y3_1.heavy 383.222 / 437.214 9942.0 24.80389976501465 47 17 10 10 10 2.25164640030463 34.86971869595792 0.0 3 0.973123675933183 7.511037323687534 9942.0 33.606760563380284 0.0 - - - - - - - 284.0 19 1 ORC6 origin recognition complex, subunit 6 1021 129 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A579.[MT7]-AIFDR.2y1_1.heavy 383.222 / 175.119 41754.0 24.80389976501465 47 17 10 10 10 2.25164640030463 34.86971869595792 0.0 3 0.973123675933183 7.511037323687534 41754.0 41.65598591549296 0.0 - - - - - - - 624.8 83 5 ORC6 origin recognition complex, subunit 6 1023 130 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A573.[MT7]-LSLIR.2y4_1.heavy 373.256 / 488.319 25333.0 29.041500091552734 35 14 10 1 10 2.1051545702294514 38.256633205210925 0.10179901123046875 3 0.9411276581334252 5.0611903984847215 25333.0 26.75212944736184 0.0 - - - - - - - 333.0 50 2 MYO9A;MYO15A;DDX56;CCND2 myosin IXA;myosin XVA;DEAD (Asp-Glu-Ala-Asp) box polypeptide 56;cyclin D2 1025 130 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A573.[MT7]-LSLIR.2b3_1.heavy 373.256 / 458.31 28667.0 29.041500091552734 35 14 10 1 10 2.1051545702294514 38.256633205210925 0.10179901123046875 3 0.9411276581334252 5.0611903984847215 28667.0 28.32939655617955 0.0 - - - - - - - 333.0 57 3 MYO9A;MYO15A;DDX56;CCND2 myosin IXA;myosin XVA;DEAD (Asp-Glu-Ala-Asp) box polypeptide 56;cyclin D2 1027 130 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A573.[MT7]-LSLIR.2b4_1.heavy 373.256 / 571.394 7333.0 29.041500091552734 35 14 10 1 10 2.1051545702294514 38.256633205210925 0.10179901123046875 3 0.9411276581334252 5.0611903984847215 7333.0 40.9590990990991 0.0 - - - - - - - 333.0 14 2 MYO9A;MYO15A;DDX56;CCND2 myosin IXA;myosin XVA;DEAD (Asp-Glu-Ala-Asp) box polypeptide 56;cyclin D2 1029 130 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A573.[MT7]-LSLIR.2y3_1.heavy 373.256 / 401.287 2333.0 29.041500091552734 35 14 10 1 10 2.1051545702294514 38.256633205210925 0.10179901123046875 3 0.9411276581334252 5.0611903984847215 2333.0 5.002991133840432 3.0 - - - - - - - 333.0 6 1 MYO9A;MYO15A;DDX56;CCND2 myosin IXA;myosin XVA;DEAD (Asp-Glu-Ala-Asp) box polypeptide 56;cyclin D2 1031 131 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A576.[MT7]-NVVGAR.2y4_1.heavy 380.233 / 402.246 67355.0 15.88010025024414 35 17 2 10 6 2.1747976407678937 32.14471205082232 0.0 5 0.9715481721289968 7.299147902262243 67355.0 61.709259259259255 0.0 - - - - - - - 280.0 134 4 YWHAB;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1033 131 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A576.[MT7]-NVVGAR.2y5_1.heavy 380.233 / 501.314 83773.0 15.88010025024414 35 17 2 10 6 2.1747976407678937 32.14471205082232 0.0 5 0.9715481721289968 7.299147902262243 83773.0 149.38620444801714 1.0 - - - - - - - 298.6 460 5 YWHAB;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1035 131 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A576.[MT7]-NVVGAR.2b4_1.heavy 380.233 / 514.311 36010.0 15.88010025024414 35 17 2 10 6 2.1747976407678937 32.14471205082232 0.0 5 0.9715481721289968 7.299147902262243 36010.0 70.46498610250073 0.0 - - - - - - - 280.0 72 8 YWHAB;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1037 131 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A576.[MT7]-NVVGAR.2b1_1.heavy 380.233 / 259.152 63436.0 15.88010025024414 35 17 2 10 6 2.1747976407678937 32.14471205082232 0.0 5 0.9715481721289968 7.299147902262243 63436.0 108.08086761716649 1.0 - - - - - - - 298.6 273 5 YWHAB;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1039 132 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 TPX_ECO57.DLSDVTLGQFAGK.2y7.peptide 675.85 / 720.4 871096.0 33.364601135253906 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 871096.0 81.47746847276213 0.0 - - - - - - - 418.2857142857143 1742 7 1041 132 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 TPX_ECO57.DLSDVTLGQFAGK.2y8.peptide 675.85 / 821.45 1761240.0 33.364601135253906 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1761240.0 65.33232789152497 0.0 - - - - - - - 325.3333333333333 3522 3 1043 132 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 TPX_ECO57.DLSDVTLGQFAGK.2y6.peptide 675.85 / 607.32 1666360.0 33.364601135253906 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 1666360.0 146.67985709812305 0.0 - - - - - - - 341.6 3332 5 1045 133 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A674.[MT7]-GYFLTK[MT7].2y4_1.heavy 508.805 / 652.415 52667.0 28.47599983215332 48 18 10 10 10 6.128941291611786 16.316031634511226 0.0 3 0.9896673588969078 12.130593125805005 52667.0 32.63425033487448 0.0 - - - - - - - 333.0 105 5 UBE2S ubiquitin-conjugating enzyme E2S 1047 133 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A674.[MT7]-GYFLTK[MT7].2b3_1.heavy 508.805 / 512.263 57667.0 28.47599983215332 48 18 10 10 10 6.128941291611786 16.316031634511226 0.0 3 0.9896673588969078 12.130593125805005 57667.0 186.6298075075075 0.0 - - - - - - - 333.0 115 4 UBE2S ubiquitin-conjugating enzyme E2S 1049 133 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A674.[MT7]-GYFLTK[MT7].2b4_1.heavy 508.805 / 625.347 32000.0 28.47599983215332 48 18 10 10 10 6.128941291611786 16.316031634511226 0.0 3 0.9896673588969078 12.130593125805005 32000.0 54.08 0.0 - - - - - - - 333.0 64 3 UBE2S ubiquitin-conjugating enzyme E2S 1051 133 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A674.[MT7]-GYFLTK[MT7].2y3_1.heavy 508.805 / 505.347 53667.0 28.47599983215332 48 18 10 10 10 6.128941291611786 16.316031634511226 0.0 3 0.9896673588969078 12.130593125805005 53667.0 66.87914707876969 0.0 - - - - - - - 333.0 107 3 UBE2S ubiquitin-conjugating enzyme E2S 1053 134 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A676.[MT7]-NQYNLAR.2y5_1.heavy 511.779 / 636.346 25515.0 20.15839958190918 47 17 10 10 10 2.2825581671632658 31.007732677678923 0.0 3 0.9777779874172456 8.263482981316509 25515.0 134.00555005980377 0.0 - - - - - - - 324.61538461538464 51 13 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 1055 134 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A676.[MT7]-NQYNLAR.2b4_1.heavy 511.779 / 664.317 25304.0 20.15839958190918 47 17 10 10 10 2.2825581671632658 31.007732677678923 0.0 3 0.9777779874172456 8.263482981316509 25304.0 65.9796326592569 0.0 - - - - - - - 685.5 50 8 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 1057 134 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A676.[MT7]-NQYNLAR.2y6_1.heavy 511.779 / 764.405 32052.0 20.15839958190918 47 17 10 10 10 2.2825581671632658 31.007732677678923 0.0 3 0.9777779874172456 8.263482981316509 32052.0 69.0933320143529 0.0 - - - - - - - 375.1111111111111 64 9 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 1059 134 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A676.[MT7]-NQYNLAR.2b5_1.heavy 511.779 / 777.401 13707.0 20.15839958190918 47 17 10 10 10 2.2825581671632658 31.007732677678923 0.0 3 0.9777779874172456 8.263482981316509 13707.0 82.82665876777251 0.0 - - - - - - - 295.4 27 10 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 1061 135 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A678.[MT7]-VLLVGLK[MT7].2y4_1.heavy 515.367 / 560.389 180504.0 34.01100158691406 46 16 10 10 10 5.142569388593665 19.445532465114084 0.0 3 0.9615960160178878 6.27732266329595 180504.0 111.42819408635265 0.0 - - - - - - - 765.5 361 2 SAE1 SUMO1 activating enzyme subunit 1 1063 135 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A678.[MT7]-VLLVGLK[MT7].2y5_1.heavy 515.367 / 673.473 140028.0 34.01100158691406 46 16 10 10 10 5.142569388593665 19.445532465114084 0.0 3 0.9615960160178878 6.27732266329595 140028.0 247.41177010966058 0.0 - - - - - - - 306.6 280 5 SAE1 SUMO1 activating enzyme subunit 1 1065 135 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A678.[MT7]-VLLVGLK[MT7].2b4_1.heavy 515.367 / 569.414 92112.0 34.01100158691406 46 16 10 10 10 5.142569388593665 19.445532465114084 0.0 3 0.9615960160178878 6.27732266329595 92112.0 97.80478021584622 0.0 - - - - - - - 219.0 184 2 SAE1 SUMO1 activating enzyme subunit 1 1067 135 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A678.[MT7]-VLLVGLK[MT7].2y6_1.heavy 515.367 / 786.557 146154.0 34.01100158691406 46 16 10 10 10 5.142569388593665 19.445532465114084 0.0 3 0.9615960160178878 6.27732266329595 146154.0 304.1947049130739 0.0 - - - - - - - 365.0 292 3 SAE1 SUMO1 activating enzyme subunit 1 1069 136 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A671.[MT7]-DNWSPALTISK[MT7].3b6_1.heavy 507.283 / 815.38 18504.0 31.236499786376953 45 15 10 10 10 2.2510915877273634 31.634919480545566 0.0 3 0.953969364047127 5.730054311470347 18504.0 115.72633663366335 0.0 - - - - - - - 303.0 37 6 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1071 136 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A671.[MT7]-DNWSPALTISK[MT7].3b4_1.heavy 507.283 / 647.291 24570.0 31.236499786376953 45 15 10 10 10 2.2510915877273634 31.634919480545566 0.0 3 0.953969364047127 5.730054311470347 24570.0 58.30299012211205 0.0 - - - - - - - 303.0 49 4 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1073 136 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A671.[MT7]-DNWSPALTISK[MT7].3b3_1.heavy 507.283 / 560.258 6370.0 31.236499786376953 45 15 10 10 10 2.2510915877273634 31.634919480545566 0.0 3 0.953969364047127 5.730054311470347 6370.0 24.9084766514574 1.0 - - - - - - - 303.0 12 2 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1075 136 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A671.[MT7]-DNWSPALTISK[MT7].3y4_1.heavy 507.283 / 592.379 26997.0 31.236499786376953 45 15 10 10 10 2.2510915877273634 31.634919480545566 0.0 3 0.953969364047127 5.730054311470347 26997.0 68.50885247207488 0.0 - - - - - - - 303.0 53 5 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 1077 137 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A684.[MT7]-VLVWDLR.2y4_1.heavy 522.82 / 589.309 38667.0 37.36199951171875 42 12 10 10 10 1.6714574088429226 46.188818929359954 0.0 3 0.8946659621959575 3.7686864502603283 38667.0 218.29218588640276 0.0 - - - - - - - 265.6 77 10 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 1079 137 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A684.[MT7]-VLVWDLR.2y5_1.heavy 522.82 / 688.378 50616.0 37.36199951171875 42 12 10 10 10 1.6714574088429226 46.188818929359954 0.0 3 0.8946659621959575 3.7686864502603283 50616.0 115.69530549595645 0.0 - - - - - - - 735.1428571428571 101 7 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 1081 137 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A684.[MT7]-VLVWDLR.2y6_1.heavy 522.82 / 801.462 117495.0 37.36199951171875 42 12 10 10 10 1.6714574088429226 46.188818929359954 0.0 3 0.8946659621959575 3.7686864502603283 117495.0 728.1661517255462 0.0 - - - - - - - 249.0 234 4 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 1083 137 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A684.[MT7]-VLVWDLR.2b5_1.heavy 522.82 / 757.437 206113.0 37.36199951171875 42 12 10 10 10 1.6714574088429226 46.188818929359954 0.0 3 0.8946659621959575 3.7686864502603283 206113.0 636.7950700672283 0.0 - - - - - - - 249.0 412 6 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 1085 138 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A681.[MT7]-ITLATVK[MT7].2y4_1.heavy 517.347 / 562.368 42624.0 27.88920021057129 50 20 10 10 10 6.621576354497334 15.102144058503626 0.0 3 0.99308030522349 14.827507423488616 42624.0 90.88 0.0 - - - - - - - 333.0 85 4 MAP2K4 mitogen-activated protein kinase kinase 4 1087 138 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A681.[MT7]-ITLATVK[MT7].2y5_1.heavy 517.347 / 675.452 19980.0 27.88920021057129 50 20 10 10 10 6.621576354497334 15.102144058503626 0.0 3 0.99308030522349 14.827507423488616 19980.0 69.0 0.0 - - - - - - - 333.0 39 5 MAP2K4 mitogen-activated protein kinase kinase 4 1089 138 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A681.[MT7]-ITLATVK[MT7].2b6_1.heavy 517.347 / 743.478 3663.0 27.88920021057129 50 20 10 10 10 6.621576354497334 15.102144058503626 0.0 3 0.99308030522349 14.827507423488616 3663.0 3.2774358974358972 1.0 - - - - - - - 333.0 8 5 MAP2K4 mitogen-activated protein kinase kinase 4 1091 138 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A681.[MT7]-ITLATVK[MT7].2y6_1.heavy 517.347 / 776.5 54279.0 27.88920021057129 50 20 10 10 10 6.621576354497334 15.102144058503626 0.0 3 0.99308030522349 14.827507423488616 54279.0 71.48714285714286 0.0 - - - - - - - 856.2857142857143 108 7 MAP2K4 mitogen-activated protein kinase kinase 4 1093 139 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A682.[MT7]-SDLSTLVR.2y5_1.heavy 517.802 / 575.351 9543.0 27.247699737548828 45 15 10 10 10 2.6195180215310927 38.17496164487183 0.0 3 0.9586921638016679 6.051175013883468 9543.0 20.172436823396463 1.0 - - - - - - - 329.0 28 3 SKP2 S-phase kinase-associated protein 2 (p45) 1095 139 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A682.[MT7]-SDLSTLVR.2b4_1.heavy 517.802 / 547.284 7569.0 27.247699737548828 45 15 10 10 10 2.6195180215310927 38.17496164487183 0.0 3 0.9586921638016679 6.051175013883468 7569.0 14.417142857142856 1.0 - - - - - - - 329.0 15 8 SKP2 S-phase kinase-associated protein 2 (p45) 1097 139 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A682.[MT7]-SDLSTLVR.2y6_1.heavy 517.802 / 688.435 35540.0 27.247699737548828 45 15 10 10 10 2.6195180215310927 38.17496164487183 0.0 3 0.9586921638016679 6.051175013883468 35540.0 133.9501519756839 0.0 - - - - - - - 329.0 71 4 SKP2 S-phase kinase-associated protein 2 (p45) 1099 139 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A682.[MT7]-SDLSTLVR.2y7_1.heavy 517.802 / 803.462 28959.0 27.247699737548828 45 15 10 10 10 2.6195180215310927 38.17496164487183 0.0 3 0.9586921638016679 6.051175013883468 28959.0 90.36851063829786 0.0 - - - - - - - 329.0 57 5 SKP2 S-phase kinase-associated protein 2 (p45) 1101 140 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A698.[MT7]-FDC[CAM]VLK[MT7].2b3_1.heavy 535.301 / 567.235 20667.0 28.081499099731445 50 20 10 10 10 4.807070705712963 20.80268964655648 0.0 3 0.9912805760266827 13.206945934245018 20667.0 19.22031 0.0 - - - - - - - 333.0 41 6 SOCS3 suppressor of cytokine signaling 3 1103 140 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A698.[MT7]-FDC[CAM]VLK[MT7].2y4_1.heavy 535.301 / 663.398 43333.0 28.081499099731445 50 20 10 10 10 4.807070705712963 20.80268964655648 0.0 3 0.9912805760266827 13.206945934245018 43333.0 71.93278 0.0 - - - - - - - 333.0 86 6 SOCS3 suppressor of cytokine signaling 3 1105 140 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A698.[MT7]-FDC[CAM]VLK[MT7].2y5_1.heavy 535.301 / 778.425 45000.0 28.081499099731445 50 20 10 10 10 4.807070705712963 20.80268964655648 0.0 3 0.9912805760266827 13.206945934245018 45000.0 166.86806836844346 0.0 - - - - - - - 333.0 90 3 SOCS3 suppressor of cytokine signaling 3 1107 140 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A698.[MT7]-FDC[CAM]VLK[MT7].2y3_1.heavy 535.301 / 503.367 20667.0 28.081499099731445 50 20 10 10 10 4.807070705712963 20.80268964655648 0.0 3 0.9912805760266827 13.206945934245018 20667.0 33.3433624759306 0.0 - - - - - - - 333.0 41 5 SOCS3 suppressor of cytokine signaling 3 1109 141 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A695.[MT7]-FVFSFK[MT7].2b3_1.heavy 531.815 / 538.315 36257.0 37.0432014465332 50 20 10 10 10 5.3594322842389595 18.658692692895926 0.0 3 0.9919410310252517 13.738222068022958 36257.0 74.72447815467574 0.0 - - - - - - - 702.0 72 7 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1111 141 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A695.[MT7]-FVFSFK[MT7].2y4_1.heavy 531.815 / 672.384 169425.0 37.0432014465332 50 20 10 10 10 5.3594322842389595 18.658692692895926 0.0 3 0.9919410310252517 13.738222068022958 169425.0 240.02754782220865 0.0 - - - - - - - 217.57142857142858 338 7 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1113 141 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A695.[MT7]-FVFSFK[MT7].2y5_1.heavy 531.815 / 771.452 123341.0 37.0432014465332 50 20 10 10 10 5.3594322842389595 18.658692692895926 0.0 3 0.9919410310252517 13.738222068022958 123341.0 353.27006700469695 0.0 - - - - - - - 225.66666666666666 246 6 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1115 141 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A695.[MT7]-FVFSFK[MT7].2y3_1.heavy 531.815 / 525.315 105552.0 37.0432014465332 50 20 10 10 10 5.3594322842389595 18.658692692895926 0.0 3 0.9919410310252517 13.738222068022958 105552.0 327.3930295930398 0.0 - - - - - - - 580.7142857142857 211 7 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1117 142 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A694.[MT7]-NQQIFLR.2y4_1.heavy 531.812 / 548.356 10154.0 27.148799896240234 43 13 10 10 10 1.5658921794459189 52.34619040724585 0.0 3 0.9039145267113442 3.94905444255157 10154.0 45.84046080804319 0.0 - - - - - - - 328.0 20 7 GRB2 growth factor receptor-bound protein 2 1119 142 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A694.[MT7]-NQQIFLR.2b3_1.heavy 531.812 / 515.269 27514.0 27.148799896240234 43 13 10 10 10 1.5658921794459189 52.34619040724585 0.0 3 0.9039145267113442 3.94905444255157 27514.0 13.859450568108048 0.0 - - - - - - - 328.0 55 3 GRB2 growth factor receptor-bound protein 2 1121 142 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A694.[MT7]-NQQIFLR.2b4_1.heavy 531.812 / 628.354 27514.0 27.148799896240234 43 13 10 10 10 1.5658921794459189 52.34619040724585 0.0 3 0.9039145267113442 3.94905444255157 27514.0 78.97148091603053 0.0 - - - - - - - 328.0 55 5 GRB2 growth factor receptor-bound protein 2 1123 142 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A694.[MT7]-NQQIFLR.2y6_1.heavy 531.812 / 804.473 32428.0 27.148799896240234 43 13 10 10 10 1.5658921794459189 52.34619040724585 0.0 3 0.9039145267113442 3.94905444255157 32428.0 111.93304648738795 0.0 - - - - - - - 328.0 64 9 GRB2 growth factor receptor-bound protein 2 1125 143 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A697.[MT7]-SGSDSSQADQEAK[MT7].3y6_1.heavy 533.256 / 805.417 3789.0 13.498499870300293 40 12 10 10 8 1.2336079271990226 47.023636934496984 0.0 4 0.8991208724131101 3.852488133122789 3789.0 12.807887323943664 0.0 - - - - - - - 203.66666666666666 7 18 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 1127 143 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A697.[MT7]-SGSDSSQADQEAK[MT7].3b5_1.heavy 533.256 / 578.254 5921.0 13.498499870300293 40 12 10 10 8 1.2336079271990226 47.023636934496984 0.0 4 0.8991208724131101 3.852488133122789 5921.0 4.2854041013268995 0.0 - - - - - - - 219.71428571428572 11 14 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 1129 143 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A697.[MT7]-SGSDSSQADQEAK[MT7].3b7_1.heavy 533.256 / 793.344 2605.0 13.498499870300293 40 12 10 10 8 1.2336079271990226 47.023636934496984 0.0 4 0.8991208724131101 3.852488133122789 2605.0 21.409325609668883 2.0 - - - - - - - 245.84615384615384 11 26 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 1131 143 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A697.[MT7]-SGSDSSQADQEAK[MT7].3y5_1.heavy 533.256 / 734.38 3671.0 13.498499870300293 40 12 10 10 8 1.2336079271990226 47.023636934496984 0.0 4 0.8991208724131101 3.852488133122789 3671.0 3.617114161763831 1.0 - - - - - - - 236.66666666666666 10 18 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 1133 144 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10526.[MT7]-RLEALFTK[MT7].3y3_1.heavy 422.599 / 539.331 126946.0 29.91710090637207 44 14 10 10 10 2.4186537730097357 32.775642550501445 0.0 3 0.9406050542314882 5.038650699532378 126946.0 264.2409350989765 0.0 - - - - - - - 771.3333333333334 253 3 BRCA2 breast cancer 2, early onset 1135 144 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10526.[MT7]-RLEALFTK[MT7].3b4_1.heavy 422.599 / 614.374 80663.0 29.91710090637207 44 14 10 10 10 2.4186537730097357 32.775642550501445 0.0 3 0.9406050542314882 5.038650699532378 80663.0 178.04435249621787 0.0 - - - - - - - 331.0 161 2 BRCA2 breast cancer 2, early onset 1137 144 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10526.[MT7]-RLEALFTK[MT7].3b5_1.heavy 422.599 / 727.458 60828.0 29.91710090637207 44 14 10 10 10 2.4186537730097357 32.775642550501445 0.0 3 0.9406050542314882 5.038650699532378 60828.0 153.28143558757503 0.0 - - - - - - - 331.0 121 2 BRCA2 breast cancer 2, early onset 1139 144 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10526.[MT7]-RLEALFTK[MT7].3b3_1.heavy 422.599 / 543.337 52233.0 29.91710090637207 44 14 10 10 10 2.4186537730097357 32.775642550501445 0.0 3 0.9406050542314882 5.038650699532378 52233.0 200.93698749208164 0.0 - - - - - - - 331.0 104 4 BRCA2 breast cancer 2, early onset 1141 145 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A692.[MT7]-LASPELER.2y5_1.heavy 529.802 / 643.341 72494.0 24.505300521850586 47 17 10 10 10 4.658332833212118 21.466907492534357 0.0 3 0.9783944454389714 8.380976324614386 72494.0 67.88910719821016 0.0 - - - - - - - 588.2857142857143 144 7 JUN;JUND jun proto-oncogene;jun D proto-oncogene 1143 145 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A692.[MT7]-LASPELER.2y6_1.heavy 529.802 / 730.373 48055.0 24.505300521850586 47 17 10 10 10 4.658332833212118 21.466907492534357 0.0 3 0.9783944454389714 8.380976324614386 48055.0 108.53952641165756 0.0 - - - - - - - 627.5714285714286 96 7 JUN;JUND jun proto-oncogene;jun D proto-oncogene 1145 145 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A692.[MT7]-LASPELER.2b5_1.heavy 529.802 / 642.358 42837.0 24.505300521850586 47 17 10 10 10 4.658332833212118 21.466907492534357 0.0 3 0.9783944454389714 8.380976324614386 42837.0 95.70088970237147 0.0 - - - - - - - 755.25 85 8 JUN;JUND jun proto-oncogene;jun D proto-oncogene 1147 145 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A692.[MT7]-LASPELER.2y7_1.heavy 529.802 / 801.41 186177.0 24.505300521850586 47 17 10 10 10 4.658332833212118 21.466907492534357 0.0 3 0.9783944454389714 8.380976324614386 186177.0 291.0303318860973 0.0 - - - - - - - 275.0 372 2 JUN;JUND jun proto-oncogene;jun D proto-oncogene 1149 146 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A623.[MT7]-DLGEIGR.2y5_1.heavy 452.254 / 531.289 57406.0 23.535499572753906 46 16 10 10 10 1.698204546595197 38.59430380007416 0.0 3 0.9663473469916911 6.708527450393091 57406.0 136.8787596616399 0.0 - - - - - - - 587.6666666666666 114 9 MAP2K4 mitogen-activated protein kinase kinase 4 1151 146 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A623.[MT7]-DLGEIGR.2b4_1.heavy 452.254 / 559.284 41040.0 23.535499572753906 46 16 10 10 10 1.698204546595197 38.59430380007416 0.0 3 0.9663473469916911 6.708527450393091 41040.0 44.984273232724384 0.0 - - - - - - - 615.5555555555555 82 9 MAP2K4 mitogen-activated protein kinase kinase 4 1153 146 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A623.[MT7]-DLGEIGR.2y6_1.heavy 452.254 / 644.373 71506.0 23.535499572753906 46 16 10 10 10 1.698204546595197 38.59430380007416 0.0 3 0.9663473469916911 6.708527450393091 71506.0 48.98143385799342 0.0 - - - - - - - 1164.5 143 8 MAP2K4 mitogen-activated protein kinase kinase 4 1155 146 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A623.[MT7]-DLGEIGR.2b1_1.heavy 452.254 / 260.136 54888.0 23.535499572753906 46 16 10 10 10 1.698204546595197 38.59430380007416 0.0 3 0.9663473469916911 6.708527450393091 54888.0 42.05580269590373 0.0 - - - - - - - 252.0 109 1 MAP2K4 mitogen-activated protein kinase kinase 4 1157 147 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A627.[MT7]-EITEK[MT7].2y4_1.heavy 454.271 / 634.389 33233.0 17.413700103759766 46 18 8 10 10 4.854093619724136 20.601168381602648 0.0 3 0.9892205034247148 11.87605592525666 33233.0 31.671635173903802 0.0 - - - - - - - 337.6666666666667 66 3 CAMSAP1;SNW1;CCDC39;ITGA6;PCNT;PEX19;RFC4;COLEC12;DLG5 calmodulin regulated spectrin-associated protein 1;SNW domain containing 1;coiled-coil domain containing 39;integrin, alpha 6;pericentrin;peroxisomal biogenesis factor 19;replication factor C (activator 1) 4, 37kDa;collectin sub-family member 12;discs, large homolog 5 (Drosophila) 1159 147 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A627.[MT7]-EITEK[MT7].2b4_1.heavy 454.271 / 617.326 7093.0 17.413700103759766 46 18 8 10 10 4.854093619724136 20.601168381602648 0.0 3 0.9892205034247148 11.87605592525666 7093.0 5.83223707392159 0.0 - - - - - - - 203.0 14 1 CAMSAP1;SNW1;CCDC39;ITGA6;PCNT;PEX19;RFC4;COLEC12;DLG5 calmodulin regulated spectrin-associated protein 1;SNW domain containing 1;coiled-coil domain containing 39;integrin, alpha 6;pericentrin;peroxisomal biogenesis factor 19;replication factor C (activator 1) 4, 37kDa;collectin sub-family member 12;discs, large homolog 5 (Drosophila) 1161 147 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A627.[MT7]-EITEK[MT7].2y3_1.heavy 454.271 / 521.305 29586.0 17.413700103759766 46 18 8 10 10 4.854093619724136 20.601168381602648 0.0 3 0.9892205034247148 11.87605592525666 29586.0 23.117814904704698 0.0 - - - - - - - 283.8 59 5 CAMSAP1;SNW1;CCDC39;ITGA6;PCNT;PEX19;RFC4;COLEC12;DLG5 calmodulin regulated spectrin-associated protein 1;SNW domain containing 1;coiled-coil domain containing 39;integrin, alpha 6;pericentrin;peroxisomal biogenesis factor 19;replication factor C (activator 1) 4, 37kDa;collectin sub-family member 12;discs, large homolog 5 (Drosophila) 1163 147 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A627.[MT7]-EITEK[MT7].2y1_1.heavy 454.271 / 291.215 N/A 17.413700103759766 46 18 8 10 10 4.854093619724136 20.601168381602648 0.0 3 0.9892205034247148 11.87605592525666 19859.0 5.825412652992861 8.0 - - - - - - - 2432.0 87 1 CAMSAP1;SNW1;CCDC39;ITGA6;PCNT;PEX19;RFC4;COLEC12;DLG5 calmodulin regulated spectrin-associated protein 1;SNW domain containing 1;coiled-coil domain containing 39;integrin, alpha 6;pericentrin;peroxisomal biogenesis factor 19;replication factor C (activator 1) 4, 37kDa;collectin sub-family member 12;discs, large homolog 5 (Drosophila) 1165 148 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A629.[MT7]-C[CAM]LQVVR.2y4_1.heavy 459.769 / 501.314 49259.0 22.705699920654297 47 17 10 10 10 2.8579114485185664 29.518519189112947 0.0 3 0.9783647601819729 8.375203786342507 49259.0 42.08401960784313 0.0 - - - - - - - 380.8 98 5 GPR44;VHL G protein-coupled receptor 44;von Hippel-Lindau tumor suppressor 1167 148 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A629.[MT7]-C[CAM]LQVVR.2b3_1.heavy 459.769 / 546.283 88524.0 22.705699920654297 47 17 10 10 10 2.8579114485185664 29.518519189112947 0.0 3 0.9783647601819729 8.375203786342507 88524.0 135.76159663865545 0.0 - - - - - - - 816.0 177 7 GPR44;VHL G protein-coupled receptor 44;von Hippel-Lindau tumor suppressor 1169 148 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A629.[MT7]-C[CAM]LQVVR.2y5_1.heavy 459.769 / 614.398 126123.0 22.705699920654297 47 17 10 10 10 2.8579114485185664 29.518519189112947 0.0 3 0.9783647601819729 8.375203786342507 126123.0 246.795306122449 0.0 - - - - - - - 317.3333333333333 252 6 GPR44;VHL G protein-coupled receptor 44;von Hippel-Lindau tumor suppressor 1171 148 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A629.[MT7]-C[CAM]LQVVR.2b4_1.heavy 459.769 / 645.351 80909.0 22.705699920654297 47 17 10 10 10 2.8579114485185664 29.518519189112947 0.0 3 0.9783647601819729 8.375203786342507 80909.0 92.22018945760122 0.0 - - - - - - - 396.6666666666667 161 6 GPR44;VHL G protein-coupled receptor 44;von Hippel-Lindau tumor suppressor 1173 149 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9998.[MT7]-DASTK[MT7].2y4_1.heavy 405.234 / 550.332 10558.0 12.097750186920166 42 20 10 8 4 18.58492239986249 5.380705813479205 0.014600753784179688 7 0.9987251252852876 34.560694884769845 10558.0 17.09613126667802 0.0 - - - - - - - 170.86046511627907 21 43 PIK3R1;PIK3R3;ZMYM5 phosphoinositide-3-kinase, regulatory subunit 1 (alpha);phosphoinositide-3-kinase, regulatory subunit 3 (gamma);zinc finger, MYM-type 5 1175 149 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9998.[MT7]-DASTK[MT7].2b3_1.heavy 405.234 / 418.205 1784.0 12.097750186920166 42 20 10 8 4 18.58492239986249 5.380705813479205 0.014600753784179688 7 0.9987251252852876 34.560694884769845 1784.0 -2.223052959501558 5.0 - - - - - - - 198.26829268292684 15 41 PIK3R1;PIK3R3;ZMYM5 phosphoinositide-3-kinase, regulatory subunit 1 (alpha);phosphoinositide-3-kinase, regulatory subunit 3 (gamma);zinc finger, MYM-type 5 1177 149 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9998.[MT7]-DASTK[MT7].2b4_1.heavy 405.234 / 519.253 713.0 12.097750186920166 42 20 10 8 4 18.58492239986249 5.380705813479205 0.014600753784179688 7 0.9987251252852876 34.560694884769845 713.0 -0.9575208275365401 32.0 - - - - - - - 727.7 7 10 PIK3R1;PIK3R3;ZMYM5 phosphoinositide-3-kinase, regulatory subunit 1 (alpha);phosphoinositide-3-kinase, regulatory subunit 3 (gamma);zinc finger, MYM-type 5 1179 149 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9998.[MT7]-DASTK[MT7].2y3_1.heavy 405.234 / 479.295 5636.0 12.097750186920166 42 20 10 8 4 18.58492239986249 5.380705813479205 0.014600753784179688 7 0.9987251252852876 34.560694884769845 5636.0 12.508659999672652 0.0 - - - - - - - 182.33333333333334 11 36 PIK3R1;PIK3R3;ZMYM5 phosphoinositide-3-kinase, regulatory subunit 1 (alpha);phosphoinositide-3-kinase, regulatory subunit 3 (gamma);zinc finger, MYM-type 5 1181 150 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A631.[MT7]-DRDVER.2y4_1.heavy 467.247 / 518.257 7663.0 12.772899627685547 48 18 10 10 10 2.7906004340656105 28.03311233569938 0.0 3 0.980197836969917 8.755617359677137 7663.0 6.6418201516793065 0.0 - - - - - - - 260.61764705882354 15 34 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 1183 150 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A631.[MT7]-DRDVER.2b3_1.heavy 467.247 / 531.264 14311.0 12.772899627685547 48 18 10 10 10 2.7906004340656105 28.03311233569938 0.0 3 0.980197836969917 8.755617359677137 14311.0 37.144652865216244 0.0 - - - - - - - 217.60714285714286 28 28 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 1185 150 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A631.[MT7]-DRDVER.2b5_1.heavy 467.247 / 759.375 20035.0 12.772899627685547 48 18 10 10 10 2.7906004340656105 28.03311233569938 0.0 3 0.980197836969917 8.755617359677137 20035.0 43.39221823813037 0.0 - - - - - - - 287.5769230769231 40 26 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 1187 150 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A631.[MT7]-DRDVER.2y1_1.heavy 467.247 / 175.119 31854.0 12.772899627685547 48 18 10 10 10 2.7906004340656105 28.03311233569938 0.0 3 0.980197836969917 8.755617359677137 31854.0 17.249458483754513 0.0 - - - - - - - 1255.8 63 10 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 1189 151 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A633.[MT7]-VSGVC[CAM]K[MT7].2y4_1.heavy 469.273 / 607.335 11912.0 17.860950469970703 41 16 10 5 10 2.520783381754051 32.40692807185591 0.04949951171875 3 0.9628950731917602 6.386964150451207 11912.0 17.203896103896106 1.0 - - - - - - - 246.2 23 5 SKP2 S-phase kinase-associated protein 2 (p45) 1191 151 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A633.[MT7]-VSGVC[CAM]K[MT7].2y5_1.heavy 469.273 / 694.367 68394.0 17.860950469970703 41 16 10 5 10 2.520783381754051 32.40692807185591 0.04949951171875 3 0.9628950731917602 6.386964150451207 68394.0 59.215584415584416 0.0 - - - - - - - 411.0 136 1 SKP2 S-phase kinase-associated protein 2 (p45) 1193 151 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A633.[MT7]-VSGVC[CAM]K[MT7].2b4_1.heavy 469.273 / 487.3 9242.0 17.860950469970703 41 16 10 5 10 2.520783381754051 32.40692807185591 0.04949951171875 3 0.9628950731917602 6.386964150451207 9242.0 19.70239371518869 0.0 - - - - - - - 293.2857142857143 18 7 SKP2 S-phase kinase-associated protein 2 (p45) 1195 151 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A633.[MT7]-VSGVC[CAM]K[MT7].2y3_1.heavy 469.273 / 550.314 7394.0 17.860950469970703 41 16 10 5 10 2.520783381754051 32.40692807185591 0.04949951171875 3 0.9628950731917602 6.386964150451207 7394.0 12.685711852835816 0.0 - - - - - - - 205.0 14 5 SKP2 S-phase kinase-associated protein 2 (p45) 1197 152 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A638.[MT7]-GDVQEVR.2y5_1.heavy 473.757 / 630.357 68259.0 16.368600845336914 43 13 10 10 10 1.2922936814564143 44.74503606443174 0.0 3 0.9196431437860875 4.324131281786684 68259.0 134.68383309670355 0.0 - - - - - - - 193.0 136 4 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 1199 152 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A638.[MT7]-GDVQEVR.2b4_1.heavy 473.757 / 544.285 66712.0 16.368600845336914 43 13 10 10 10 1.2922936814564143 44.74503606443174 0.0 3 0.9196431437860875 4.324131281786684 66712.0 109.17687736690083 0.0 - - - - - - - 309.4 133 5 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 1201 152 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A638.[MT7]-GDVQEVR.2y6_1.heavy 473.757 / 745.384 31906.0 16.368600845336914 43 13 10 10 10 1.2922936814564143 44.74503606443174 0.0 3 0.9196431437860875 4.324131281786684 31906.0 121.65728331177232 0.0 - - - - - - - 387.0 63 2 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 1203 152 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A638.[MT7]-GDVQEVR.2b5_1.heavy 473.757 / 673.327 152568.0 16.368600845336914 43 13 10 10 10 1.2922936814564143 44.74503606443174 0.0 3 0.9196431437860875 4.324131281786684 152568.0 450.37070988510845 0.0 - - - - - - - 257.6666666666667 305 6 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 1205 153 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A639.[MT7]-AIEQAK[MT7].2y4_1.heavy 474.292 / 619.353 37279.0 16.700600624084473 40 17 10 3 10 4.424486861058993 22.601491006815912 0.05159950256347656 3 0.9755475065387818 7.876111116873383 37279.0 120.9879560187807 0.0 - - - - - - - 295.5 74 4 RNASEH1 ribonuclease H1 1207 153 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A639.[MT7]-AIEQAK[MT7].2y5_1.heavy 474.292 / 732.437 37871.0 16.700600624084473 40 17 10 3 10 4.424486861058993 22.601491006815912 0.05159950256347656 3 0.9755475065387818 7.876111116873383 37871.0 130.4941207874713 0.0 - - - - - - - 315.2 75 5 RNASEH1 ribonuclease H1 1209 153 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A639.[MT7]-AIEQAK[MT7].2y3_1.heavy 474.292 / 490.311 20711.0 16.700600624084473 40 17 10 3 10 4.424486861058993 22.601491006815912 0.05159950256347656 3 0.9755475065387818 7.876111116873383 20711.0 140.08179219543146 0.0 - - - - - - - 253.28571428571428 41 7 RNASEH1 ribonuclease H1 1211 153 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A639.[MT7]-AIEQAK[MT7].2b5_1.heavy 474.292 / 657.369 6312.0 16.700600624084473 40 17 10 3 10 4.424486861058993 22.601491006815912 0.05159950256347656 3 0.9755475065387818 7.876111116873383 6312.0 1.8391142191142191 4.0 - - - - - - - 281.42857142857144 13 7 RNASEH1 ribonuclease H1 1213 154 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10589.[MT7]-SFLEYYDFYEVAC[CAM]K[MT7].3y3_1.heavy 708.008 / 522.283 58024.0 40.627201080322266 43 13 10 10 10 1.163539657004564 51.46983863970614 0.0 3 0.920302475217393 4.34222685583257 58024.0 111.01597567082922 0.0 - - - - - - - 358.625 116 8 UBE2Z ubiquitin-conjugating enzyme E2Z 1215 154 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10589.[MT7]-SFLEYYDFYEVAC[CAM]K[MT7].3b5_1.heavy 708.008 / 784.4 27259.0 40.627201080322266 43 13 10 10 10 1.163539657004564 51.46983863970614 0.0 3 0.920302475217393 4.34222685583257 27259.0 42.812664705882355 0.0 - - - - - - - 345.3333333333333 54 12 UBE2Z ubiquitin-conjugating enzyme E2Z 1217 154 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10589.[MT7]-SFLEYYDFYEVAC[CAM]K[MT7].3y5_1.heavy 708.008 / 750.394 19767.0 40.627201080322266 43 13 10 10 10 1.163539657004564 51.46983863970614 0.0 3 0.920302475217393 4.34222685583257 19767.0 34.96376501552166 0.0 - - - - - - - 261.7142857142857 39 14 UBE2Z ubiquitin-conjugating enzyme E2Z 1219 154 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10589.[MT7]-SFLEYYDFYEVAC[CAM]K[MT7].3b7_1.heavy 708.008 / 1062.49 25346.0 40.627201080322266 43 13 10 10 10 1.163539657004564 51.46983863970614 0.0 3 0.920302475217393 4.34222685583257 25346.0 77.07090909090908 0.0 - - - - - - - 774.2857142857143 50 7 UBE2Z ubiquitin-conjugating enzyme E2Z 1221 155 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A645.[MT7]-EQGITLR.2y5_1.heavy 480.783 / 559.356 35686.0 22.98870086669922 48 18 10 10 10 2.863490931429497 27.04893806797752 0.0 3 0.9872485967680754 10.917439871599678 35686.0 63.714903351025896 1.0 - - - - - - - 445.5 71 6 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 1223 155 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A645.[MT7]-EQGITLR.2b4_1.heavy 480.783 / 572.316 27675.0 22.98870086669922 48 18 10 10 10 2.863490931429497 27.04893806797752 0.0 3 0.9872485967680754 10.917439871599678 27675.0 63.41039426523298 0.0 - - - - - - - 277.7142857142857 55 7 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 1225 155 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A645.[MT7]-EQGITLR.2y6_1.heavy 480.783 / 687.415 78655.0 22.98870086669922 48 18 10 10 10 2.863490931429497 27.04893806797752 0.0 3 0.9872485967680754 10.917439871599678 78655.0 148.31849152539633 2.0 - - - - - - - 243.0 157 8 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 1227 155 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A645.[MT7]-EQGITLR.2b5_1.heavy 480.783 / 673.364 19178.0 22.98870086669922 48 18 10 10 10 2.863490931429497 27.04893806797752 0.0 3 0.9872485967680754 10.917439871599678 19178.0 31.675572537658017 0.0 - - - - - - - 762.7142857142857 38 7 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 1229 156 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10472.[MT7]-DHPFGFVAVPTK[MT7].3b6_1.heavy 534.968 / 845.406 35829.0 30.937299728393555 48 18 10 10 10 3.570047440943554 22.753858349686627 0.0 3 0.9813546278970121 9.024013267742847 35829.0 147.04818749999998 0.0 - - - - - - - 320.0 71 3 UBE2I ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) 1231 156 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10472.[MT7]-DHPFGFVAVPTK[MT7].3b5_1.heavy 534.968 / 698.338 41267.0 30.937299728393555 48 18 10 10 10 3.570047440943554 22.753858349686627 0.0 3 0.9813546278970121 9.024013267742847 41267.0 158.62003124999998 0.0 - - - - - - - 320.0 82 3 UBE2I ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) 1233 156 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10472.[MT7]-DHPFGFVAVPTK[MT7].3b8_1.heavy 534.968 / 1015.51 24632.0 30.937299728393555 48 18 10 10 10 3.570047440943554 22.753858349686627 0.0 3 0.9813546278970121 9.024013267742847 24632.0 150.87099999999998 0.0 - - - - - - - 320.0 49 2 UBE2I ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) 1235 156 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10472.[MT7]-DHPFGFVAVPTK[MT7].3b7_1.heavy 534.968 / 944.475 19834.0 30.937299728393555 48 18 10 10 10 3.570047440943554 22.753858349686627 0.0 3 0.9813546278970121 9.024013267742847 19834.0 123.34268750000001 0.0 - - - - - - - 320.0 39 4 UBE2I ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) 1237 157 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A646.[MT7]-VLEALK[MT7].2b3_1.heavy 480.82 / 486.304 29667.0 28.682100296020508 45 17 10 10 8 5.0926920383595595 19.635980194123746 0.0 4 0.9783687400842678 8.375977021546182 29667.0 3.977080566267848 1.0 - - - - - - - 333.0 126 1 PLD5;PCNA phospholipase D family, member 5;proliferating cell nuclear antigen 1239 157 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A646.[MT7]-VLEALK[MT7].2y4_1.heavy 480.82 / 604.379 51333.0 28.682100296020508 45 17 10 10 8 5.0926920383595595 19.635980194123746 0.0 4 0.9783687400842678 8.375977021546182 51333.0 148.53476761619189 0.0 - - - - - - - 333.0 102 2 PLD5;PCNA phospholipase D family, member 5;proliferating cell nuclear antigen 1241 157 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A646.[MT7]-VLEALK[MT7].2y5_1.heavy 480.82 / 717.463 107333.0 28.682100296020508 45 17 10 10 8 5.0926920383595595 19.635980194123746 0.0 4 0.9783687400842678 8.375977021546182 107333.0 152.3591935 0.0 - - - - - - - 333.0 214 2 PLD5;PCNA phospholipase D family, member 5;proliferating cell nuclear antigen 1243 157 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A646.[MT7]-VLEALK[MT7].2b4_1.heavy 480.82 / 557.341 29667.0 28.682100296020508 45 17 10 10 8 5.0926920383595595 19.635980194123746 0.0 4 0.9783687400842678 8.375977021546182 29667.0 15.795907822546077 1.0 - - - - - - - 333.0 69 3 PLD5;PCNA phospholipase D family, member 5;proliferating cell nuclear antigen 1245 158 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9886.[MT7]-YFLLK[MT7].2b3_1.heavy 486.312 / 568.325 39341.0 34.481201171875 50 20 10 10 10 5.028398219683675 19.88704864474532 0.0 3 0.991240995244718 13.177028324510866 39341.0 358.6435348837209 0.0 - - - - - - - 322.5 78 6 AKT3;AKT1;AKT2;C1GALT1C1;QRICH1 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2;C1GALT1-specific chaperone 1;glutamine-rich 1 1247 158 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9886.[MT7]-YFLLK[MT7].2y4_1.heavy 486.312 / 664.451 125117.0 34.481201171875 50 20 10 10 10 5.028398219683675 19.88704864474532 0.0 3 0.991240995244718 13.177028324510866 125117.0 615.1932225913622 0.0 - - - - - - - 268.75 250 4 AKT3;AKT1;AKT2;C1GALT1C1;QRICH1 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2;C1GALT1-specific chaperone 1;glutamine-rich 1 1249 158 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9886.[MT7]-YFLLK[MT7].2b4_1.heavy 486.312 / 681.409 13329.0 34.481201171875 50 20 10 10 10 5.028398219683675 19.88704864474532 0.0 3 0.991240995244718 13.177028324510866 13329.0 13.261250735742967 0.0 - - - - - - - 215.0 26 6 AKT3;AKT1;AKT2;C1GALT1C1;QRICH1 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2;C1GALT1-specific chaperone 1;glutamine-rich 1 1251 158 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9886.[MT7]-YFLLK[MT7].2y3_1.heavy 486.312 / 517.383 67288.0 34.481201171875 50 20 10 10 10 5.028398219683675 19.88704864474532 0.0 3 0.991240995244718 13.177028324510866 67288.0 130.8203906976744 0.0 - - - - - - - 215.0 134 4 AKT3;AKT1;AKT2;C1GALT1C1;QRICH1 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2;C1GALT1-specific chaperone 1;glutamine-rich 1 1253 159 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A643.[MT7]-EQAAQLR.2y5_1.heavy 480.273 / 558.336 18395.0 17.307100296020508 44 14 10 10 10 1.497541408011998 44.51741121146517 0.0 3 0.9485457873374007 5.417162846492274 18395.0 29.582237349476987 1.0 - - - - - - - 259.7142857142857 44 7 RFC3 replication factor C (activator 1) 3, 38kDa 1255 159 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A643.[MT7]-EQAAQLR.2b4_1.heavy 480.273 / 544.285 17385.0 17.307100296020508 44 14 10 10 10 1.497541408011998 44.51741121146517 0.0 3 0.9485457873374007 5.417162846492274 17385.0 96.2607018157646 0.0 - - - - - - - 269.3333333333333 34 6 RFC3 replication factor C (activator 1) 3, 38kDa 1257 159 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A643.[MT7]-EQAAQLR.2y6_1.heavy 480.273 / 686.394 N/A 17.307100296020508 44 14 10 10 10 1.497541408011998 44.51741121146517 0.0 3 0.9485457873374007 5.417162846492274 55792.0 91.69504007321187 1.0 - - - - - - - 303.0 122 4 RFC3 replication factor C (activator 1) 3, 38kDa 1259 159 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A643.[MT7]-EQAAQLR.2b5_1.heavy 480.273 / 672.343 22640.0 17.307100296020508 44 14 10 10 10 1.497541408011998 44.51741121146517 0.0 3 0.9485457873374007 5.417162846492274 22640.0 23.671797907800595 1.0 - - - - - - - 303.0 45 4 RFC3 replication factor C (activator 1) 3, 38kDa 1261 160 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A644.[MT7]-LAEQAER.2y4_1.heavy 480.765 / 503.257 35314.0 17.734600067138672 50 20 10 10 10 10.210538666603743 9.793802586251042 0.0 3 0.993245504106315 15.00794198173585 35314.0 92.3140147428698 0.0 - - - - - - - 287.4 70 5 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1263 160 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A644.[MT7]-LAEQAER.2y5_1.heavy 480.765 / 632.3 29771.0 17.734600067138672 50 20 10 10 10 10.210538666603743 9.793802586251042 0.0 3 0.993245504106315 15.00794198173585 29771.0 102.8662951507123 0.0 - - - - - - - 703.8571428571429 59 7 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1265 160 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A644.[MT7]-LAEQAER.2b4_1.heavy 480.765 / 586.332 22174.0 17.734600067138672 50 20 10 10 10 10.210538666603743 9.793802586251042 0.0 3 0.993245504106315 15.00794198173585 22174.0 31.06341950672848 0.0 - - - - - - - 308.0 44 4 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1267 160 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A644.[MT7]-LAEQAER.2y6_1.heavy 480.765 / 703.337 156246.0 17.734600067138672 50 20 10 10 10 10.210538666603743 9.793802586251042 0.0 3 0.993245504106315 15.00794198173585 156246.0 815.3609010881344 0.0 - - - - - - - 205.0 312 2 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1269 161 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A640.[MT7]-ESWDK[MT7].2b3_1.heavy 476.753 / 547.263 6610.0 20.54840087890625 44 14 10 10 10 1.055268308532387 59.90633356406707 0.0 3 0.9387824875678807 4.96230782851948 6610.0 13.94841735052755 0.0 - - - - - - - 340.8 13 10 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1271 161 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A640.[MT7]-ESWDK[MT7].2y4_1.heavy 476.753 / 679.353 85498.0 20.54840087890625 44 14 10 10 10 1.055268308532387 59.90633356406707 0.0 3 0.9387824875678807 4.96230782851948 85498.0 168.10362511726078 0.0 - - - - - - - 700.8571428571429 170 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1273 161 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A640.[MT7]-ESWDK[MT7].2b4_1.heavy 476.753 / 662.29 49465.0 20.54840087890625 44 14 10 10 10 1.055268308532387 59.90633356406707 0.0 3 0.9387824875678807 4.96230782851948 49465.0 93.95269922511653 0.0 - - - - - - - 734.6666666666666 98 9 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1275 161 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A640.[MT7]-ESWDK[MT7].2y3_1.heavy 476.753 / 592.321 14285.0 20.54840087890625 44 14 10 10 10 1.055268308532387 59.90633356406707 0.0 3 0.9387824875678807 4.96230782851948 14285.0 27.132605042571306 0.0 - - - - - - - 319.5 28 6 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1277 162 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10571.[MT7]-ILDLIDDAWR.2y4_1.heavy 687.381 / 547.262 14780.0 45.13599967956543 35 20 2 5 8 5.965683544047216 16.762538485599656 0.042797088623046875 4 0.9940317546551471 15.966980725798496 14780.0 92.4973509933775 0.0 - - - - - - - 271.6 29 15 ANAPC13 anaphase promoting complex subunit 13 1279 162 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10571.[MT7]-ILDLIDDAWR.2y8_1.heavy 687.381 / 1003.48 15987.0 45.13599967956543 35 20 2 5 8 5.965683544047216 16.762538485599656 0.042797088623046875 4 0.9940317546551471 15.966980725798496 15987.0 141.87139072847683 0.0 - - - - - - - 218.11111111111111 31 9 ANAPC13 anaphase promoting complex subunit 13 1281 162 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10571.[MT7]-ILDLIDDAWR.2y9_1.heavy 687.381 / 1116.57 21718.0 45.13599967956543 35 20 2 5 8 5.965683544047216 16.762538485599656 0.042797088623046875 4 0.9940317546551471 15.966980725798496 21718.0 149.59681972851342 1.0 - - - - - - - 264.0 43 4 ANAPC13 anaphase promoting complex subunit 13 1283 162 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10571.[MT7]-ILDLIDDAWR.2y7_1.heavy 687.381 / 888.457 17796.0 45.13599967956543 35 20 2 5 8 5.965683544047216 16.762538485599656 0.042797088623046875 4 0.9940317546551471 15.966980725798496 17796.0 64.75107207326201 1.0 - - - - - - - 301.7142857142857 111 7 ANAPC13 anaphase promoting complex subunit 13 1285 163 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10573.[MT7]-ILDLIDDAWREDK[MT7].3y10_2.heavy 630.679 / 702.866 31298.0 42.133201599121094 46 16 10 10 10 3.5929083727146574 22.247481146245864 0.0 3 0.9627217866152333 6.372008769683077 31298.0 215.03503815482762 0.0 - - - - - - - 296.5 62 10 ANAPC13 anaphase promoting complex subunit 13 1287 163 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10573.[MT7]-ILDLIDDAWREDK[MT7].3b4_1.heavy 630.679 / 599.388 13343.0 42.133201599121094 46 16 10 10 10 3.5929083727146574 22.247481146245864 0.0 3 0.9627217866152333 6.372008769683077 13343.0 22.6743588906946 0.0 - - - - - - - 254.45454545454547 26 11 ANAPC13 anaphase promoting complex subunit 13 1289 163 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10573.[MT7]-ILDLIDDAWREDK[MT7].3y7_2.heavy 630.679 / 532.268 37558.0 42.133201599121094 46 16 10 10 10 3.5929083727146574 22.247481146245864 0.0 3 0.9627217866152333 6.372008769683077 37558.0 116.4258150561003 0.0 - - - - - - - 329.14285714285717 75 7 ANAPC13 anaphase promoting complex subunit 13 1291 163 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10573.[MT7]-ILDLIDDAWREDK[MT7].3y12_2.heavy 630.679 / 816.921 34428.0 42.133201599121094 46 16 10 10 10 3.5929083727146574 22.247481146245864 0.0 3 0.9627217866152333 6.372008769683077 34428.0 224.20319987384687 0.0 - - - - - - - 329.42857142857144 68 7 ANAPC13 anaphase promoting complex subunit 13 1293 164 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9897.[MT7]-SLLSGLLIK[MT7].3b6_1.heavy 411.279 / 715.447 5728.0 39.8223991394043 38 12 10 6 10 1.20562252595346 54.93825180931748 0.03399658203125 3 0.8986279207525206 3.8429458089608666 5728.0 54.0377358490566 0.0 - - - - - - - 477.0 11 2 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1295 164 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9897.[MT7]-SLLSGLLIK[MT7].3y3_1.heavy 411.279 / 517.383 9228.0 39.8223991394043 38 12 10 6 10 1.20562252595346 54.93825180931748 0.03399658203125 3 0.8986279207525206 3.8429458089608666 9228.0 113.75396226415094 0.0 - - - - - - - 159.0 18 3 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1297 164 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9897.[MT7]-SLLSGLLIK[MT7].3b5_1.heavy 411.279 / 602.363 7160.0 39.8223991394043 38 12 10 6 10 1.20562252595346 54.93825180931748 0.03399658203125 3 0.8986279207525206 3.8429458089608666 7160.0 15.261006289308174 1.0 - - - - - - - 286.2 14 5 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1299 164 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9897.[MT7]-SLLSGLLIK[MT7].3y5_1.heavy 411.279 / 687.489 2546.0 39.8223991394043 38 12 10 6 10 1.20562252595346 54.93825180931748 0.03399658203125 3 0.8986279207525206 3.8429458089608666 2546.0 0.0 0.0 - - - - - - - 286.2 5 5 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1301 165 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A654.[MT7]-SINIIK[MT7].2y4_1.heavy 488.326 / 631.426 40886.0 26.399599075317383 37 15 4 10 8 3.7308426501447842 21.340391616322616 0.0 4 0.9500913695708597 5.501125234129213 40886.0 31.42287728056267 1.0 - - - - - - - 317.0 92 4 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1303 165 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A654.[MT7]-SINIIK[MT7].2y5_1.heavy 488.326 / 744.51 31061.0 26.399599075317383 37 15 4 10 8 3.7308426501447842 21.340391616322616 0.0 4 0.9500913695708597 5.501125234129213 31061.0 77.96278338590957 1.0 - - - - - - - 792.5 171 8 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1305 165 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A654.[MT7]-SINIIK[MT7].2b4_1.heavy 488.326 / 572.352 45323.0 26.399599075317383 37 15 4 10 8 3.7308426501447842 21.340391616322616 0.0 4 0.9500913695708597 5.501125234129213 45323.0 89.35922712933754 0.0 - - - - - - - 317.0 90 5 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1307 165 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A654.[MT7]-SINIIK[MT7].2y3_1.heavy 488.326 / 517.383 20602.0 26.399599075317383 37 15 4 10 8 3.7308426501447842 21.340391616322616 0.0 4 0.9500913695708597 5.501125234129213 20602.0 20.704127985579092 0.0 - - - - - - - 317.0 41 4 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1309 166 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9898.[MT7]-ITDFGLC[CAM]K[MT7].2y5_1.heavy 621.344 / 768.419 22290.0 30.786399841308594 50 20 10 10 10 8.626833882857385 11.591738215652061 0.0 3 0.9903191676871563 12.532999908482351 22290.0 21.288881741072966 1.0 - - - - - - - 318.0 48 6 AKT3;AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 1311 166 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9898.[MT7]-ITDFGLC[CAM]K[MT7].2y3_1.heavy 621.344 / 564.33 4458.0 30.786399841308594 50 20 10 10 10 8.626833882857385 11.591738215652061 0.0 3 0.9903191676871563 12.532999908482351 4458.0 7.348351648351647 0.0 - - - - - - - 318.0 8 1 AKT3;AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 1313 166 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9898.[MT7]-ITDFGLC[CAM]K[MT7].2y6_1.heavy 621.344 / 883.446 9235.0 30.786399841308594 50 20 10 10 10 8.626833882857385 11.591738215652061 0.0 3 0.9903191676871563 12.532999908482351 9235.0 42.63962612185658 0.0 - - - - - - - 318.0 18 9 AKT3;AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 1315 166 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9898.[MT7]-ITDFGLC[CAM]K[MT7].2y7_1.heavy 621.344 / 984.494 32480.0 30.786399841308594 50 20 10 10 10 8.626833882857385 11.591738215652061 0.0 3 0.9903191676871563 12.532999908482351 32480.0 37.21316205468609 0.0 - - - - - - - 318.0 64 4 AKT3;AKT1;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1;v-akt murine thymoma viral oncogene homolog 2 1317 167 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A658.[MT7]-TTQDVK[MT7].2y4_1.heavy 490.287 / 633.369 11316.0 14.649200439453125 47 17 10 10 10 3.3223876607902003 30.098835599520584 0.0 3 0.9788392478841992 8.46891937293946 11316.0 24.037254901960782 1.0 - - - - - - - 255.0 48 15 CCNE2 cyclin E2 1319 167 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A658.[MT7]-TTQDVK[MT7].2y5_1.heavy 490.287 / 734.417 34711.0 14.649200439453125 47 17 10 10 10 3.3223876607902003 30.098835599520584 0.0 3 0.9788392478841992 8.46891937293946 34711.0 95.30630077576203 0.0 - - - - - - - 282.46153846153845 69 13 CCNE2 cyclin E2 1321 167 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A658.[MT7]-TTQDVK[MT7].2b4_1.heavy 490.287 / 590.29 79974.0 14.649200439453125 47 17 10 10 10 3.3223876607902003 30.098835599520584 0.0 3 0.9788392478841992 8.46891937293946 79974.0 192.71726223199562 0.0 - - - - - - - 323.0 159 9 CCNE2 cyclin E2 1323 167 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A658.[MT7]-TTQDVK[MT7].2y3_1.heavy 490.287 / 505.31 14527.0 14.649200439453125 47 17 10 10 10 3.3223876607902003 30.098835599520584 0.0 3 0.9788392478841992 8.46891937293946 14527.0 32.927286833308386 0.0 - - - - - - - 363.375 29 8 CCNE2 cyclin E2 1325 168 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9888.[MT7]-TLSSDAK[MT7].2y4_1.heavy 505.292 / 564.311 8562.0 16.988500595092773 44 14 10 10 10 1.5377069787241326 44.98623730000969 0.0 3 0.9454241510258783 5.258560664543583 8562.0 21.865404848510334 0.0 - - - - - - - 278.6 17 5 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1327 168 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9888.[MT7]-TLSSDAK[MT7].2y5_1.heavy 505.292 / 651.343 17722.0 16.988500595092773 44 14 10 10 10 1.5377069787241326 44.98623730000969 0.0 3 0.9454241510258783 5.258560664543583 17722.0 30.75494063282418 0.0 - - - - - - - 318.4 35 5 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1329 168 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9888.[MT7]-TLSSDAK[MT7].2y6_1.heavy 505.292 / 764.427 14536.0 16.988500595092773 44 14 10 10 10 1.5377069787241326 44.98623730000969 0.0 3 0.9454241510258783 5.258560664543583 14536.0 29.5184333468977 0.0 - - - - - - - 364.8333333333333 29 6 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1331 168 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9888.[MT7]-TLSSDAK[MT7].2b5_1.heavy 505.292 / 648.332 24691.0 16.988500595092773 44 14 10 10 10 1.5377069787241326 44.98623730000969 0.0 3 0.9454241510258783 5.258560664543583 24691.0 25.11880353050782 0.0 - - - - - - - 398.0 49 3 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1333 169 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1089.[MT7]-VIFAGK[MT7].2b3_1.heavy 461.802 / 504.33 51122.0 26.769100189208984 44 18 8 10 8 6.143473198970065 16.277437332479078 0.0 4 0.9861833004996664 10.487184272184026 51122.0 49.18794450132825 0.0 - - - - - - - 804.0 102 8 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 1335 169 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1089.[MT7]-VIFAGK[MT7].2y4_1.heavy 461.802 / 566.342 256898.0 26.769100189208984 44 18 8 10 8 6.143473198970065 16.277437332479078 0.0 4 0.9861833004996664 10.487184272184026 256898.0 868.8572723175386 0.0 - - - - - - - 322.0 513 1 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 1337 169 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1089.[MT7]-VIFAGK[MT7].2y5_1.heavy 461.802 / 679.426 204490.0 26.769100189208984 44 18 8 10 8 6.143473198970065 16.277437332479078 0.0 4 0.9861833004996664 10.487184272184026 204490.0 652.6028631318645 1.0 - - - - - - - 322.0 663 2 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 1339 169 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1089.[MT7]-VIFAGK[MT7].2b4_1.heavy 461.802 / 575.367 29259.0 26.769100189208984 44 18 8 10 8 6.143473198970065 16.277437332479078 0.0 4 0.9861833004996664 10.487184272184026 29259.0 75.5360297327134 0.0 - - - - - - - 322.0 58 8 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 1341 170 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1088.[MT7]-LSGLNK[MT7].2y4_1.heavy 460.294 / 575.363 20142.0 22.552950859069824 30 16 2 6 6 3.662305379762134 27.305205227450195 0.03429985046386719 5 0.9616988657981064 6.285799883177365 20142.0 17.039081751380316 0.0 - - - - - - - 1806.857142857143 40 7 ORC6 origin recognition complex, subunit 6 1343 170 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1088.[MT7]-LSGLNK[MT7].2y5_1.heavy 460.294 / 662.395 93917.0 22.552950859069824 30 16 2 6 6 3.662305379762134 27.305205227450195 0.03429985046386719 5 0.9616988657981064 6.285799883177365 93917.0 29.33779498233641 1.0 - - - - - - - 234.0 480 3 ORC6 origin recognition complex, subunit 6 1345 170 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1088.[MT7]-LSGLNK[MT7].2b4_1.heavy 460.294 / 515.331 13116.0 22.552950859069824 30 16 2 6 6 3.662305379762134 27.305205227450195 0.03429985046386719 5 0.9616988657981064 6.285799883177365 13116.0 9.921386111066246 0.0 - - - - - - - 390.0 26 12 ORC6 origin recognition complex, subunit 6 1347 170 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1088.[MT7]-LSGLNK[MT7].2y3_1.heavy 460.294 / 518.342 14052.0 22.552950859069824 30 16 2 6 6 3.662305379762134 27.305205227450195 0.03429985046386719 5 0.9616988657981064 6.285799883177365 14052.0 5.956363636363637 3.0 - - - - - - - 1338.142857142857 44 7 ORC6 origin recognition complex, subunit 6 1349 171 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1091.[MT7]-DESLYR.2y4_1.heavy 463.739 / 538.298 18936.0 20.51140022277832 43 13 10 10 10 0.9832860075565933 67.40232386206756 0.0 3 0.9163760553079952 4.237630590196923 18936.0 33.10240601503759 0.0 - - - - - - - 340.8 37 10 UBE2U ubiquitin-conjugating enzyme E2U (putative) 1351 171 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1091.[MT7]-DESLYR.2b3_1.heavy 463.739 / 476.211 21915.0 20.51140022277832 43 13 10 10 10 0.9832860075565933 67.40232386206756 0.0 3 0.9163760553079952 4.237630590196923 21915.0 21.484860152395765 0.0 - - - - - - - 387.27272727272725 43 11 UBE2U ubiquitin-conjugating enzyme E2U (putative) 1353 171 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1091.[MT7]-DESLYR.2y5_1.heavy 463.739 / 667.341 41064.0 20.51140022277832 43 13 10 10 10 0.9832860075565933 67.40232386206756 0.0 3 0.9163760553079952 4.237630590196923 41064.0 64.01404548787634 0.0 - - - - - - - 691.25 82 8 UBE2U ubiquitin-conjugating enzyme E2U (putative) 1355 171 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1091.[MT7]-DESLYR.2b4_1.heavy 463.739 / 589.295 37234.0 20.51140022277832 43 13 10 10 10 0.9832860075565933 67.40232386206756 0.0 3 0.9163760553079952 4.237630590196923 37234.0 111.91275500239983 0.0 - - - - - - - 284.0 74 9 UBE2U ubiquitin-conjugating enzyme E2U (putative) 1357 172 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1092.[MT7]-LIVGTAGR.2b3_1.heavy 465.796 / 470.346 27933.0 24.761199951171875 48 18 10 10 10 7.259016755152243 13.77597040660126 0.0 3 0.9888856919322055 11.695481119578911 27933.0 59.954439097744356 0.0 - - - - - - - 627.0 55 10 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 1359 172 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1092.[MT7]-LIVGTAGR.2y6_1.heavy 465.796 / 560.315 78667.0 24.761199951171875 48 18 10 10 10 7.259016755152243 13.77597040660126 0.0 3 0.9888856919322055 11.695481119578911 78667.0 34.12134879760591 0.0 - - - - - - - 285.0 157 2 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 1361 172 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1092.[MT7]-LIVGTAGR.2b1_1.heavy 465.796 / 258.193 51020.0 24.761199951171875 48 18 10 10 10 7.259016755152243 13.77597040660126 0.0 3 0.9888856919322055 11.695481119578911 51020.0 42.73688666109719 0.0 - - - - - - - 285.0 102 2 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 1363 172 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1092.[MT7]-LIVGTAGR.2y7_1.heavy 465.796 / 673.399 100614.0 24.761199951171875 48 18 10 10 10 7.259016755152243 13.77597040660126 0.0 3 0.9888856919322055 11.695481119578911 100614.0 162.39452631578948 0.0 - - - - - - - 773.5714285714286 201 7 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 1365 173 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1093.[MT7]-NSPVTK[MT7].2y4_1.heavy 467.284 / 588.384 69539.0 15.88010025024414 48 18 10 10 10 10.206862293310213 9.797330181043204 0.0 3 0.9813573593690593 9.024676399579672 69539.0 283.00093032786884 0.0 - - - - - - - 313.7142857142857 139 7 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 1367 173 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1093.[MT7]-NSPVTK[MT7].2y5_1.heavy 467.284 / 675.416 45200.0 15.88010025024414 48 18 10 10 10 10.206862293310213 9.797330181043204 0.0 3 0.9813573593690593 9.024676399579672 45200.0 71.73819064966605 0.0 - - - - - - - 235.28571428571428 90 7 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 1369 173 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1093.[MT7]-NSPVTK[MT7].2b4_1.heavy 467.284 / 542.305 9882.0 15.88010025024414 48 18 10 10 10 10.206862293310213 9.797330181043204 0.0 3 0.9813573593690593 9.024676399579672 9882.0 57.51 1.0 - - - - - - - 320.25 19 8 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 1371 173 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1093.[MT7]-NSPVTK[MT7].2y3_1.heavy 467.284 / 491.331 6039.0 15.88010025024414 48 18 10 10 10 10.206862293310213 9.797330181043204 0.0 3 0.9813573593690593 9.024676399579672 6039.0 11.371621621621621 3.0 - - - - - - - 228.75 15 8 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 1373 174 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1094.[MT7]-LEFIK[MT7].2b3_1.heavy 469.302 / 534.304 31099.0 31.037900924682617 39 17 4 10 8 3.952158743681827 25.302627370387484 0.0 4 0.9752417389049204 7.827123277578734 31099.0 47.47466391058031 0.0 - - - - - - - 311.0 62 1 KCNC2;RFC2 potassium voltage-gated channel, Shaw-related subfamily, member 2;replication factor C (activator 1) 2, 40kDa 1375 174 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1094.[MT7]-LEFIK[MT7].2y4_1.heavy 469.302 / 680.41 77126.0 31.037900924682617 39 17 4 10 8 3.952158743681827 25.302627370387484 0.0 4 0.9752417389049204 7.827123277578734 77126.0 69.23153804930332 1.0 - - - - - - - 311.0 284 1 KCNC2;RFC2 potassium voltage-gated channel, Shaw-related subfamily, member 2;replication factor C (activator 1) 2, 40kDa 1377 174 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1094.[MT7]-LEFIK[MT7].2b4_1.heavy 469.302 / 647.388 12440.0 31.037900924682617 39 17 4 10 8 3.952158743681827 25.302627370387484 0.0 4 0.9752417389049204 7.827123277578734 12440.0 46.99999999999999 0.0 - - - - - - - 311.0 24 3 KCNC2;RFC2 potassium voltage-gated channel, Shaw-related subfamily, member 2;replication factor C (activator 1) 2, 40kDa 1379 174 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1094.[MT7]-LEFIK[MT7].2y3_1.heavy 469.302 / 551.367 42917.0 31.037900924682617 39 17 4 10 8 3.952158743681827 25.302627370387484 0.0 4 0.9752417389049204 7.827123277578734 42917.0 160.35226366559482 0.0 - - - - - - - 311.0 85 4 KCNC2;RFC2 potassium voltage-gated channel, Shaw-related subfamily, member 2;replication factor C (activator 1) 2, 40kDa 1381 175 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9970.[MT7]-LLEVR.2b3_1.heavy 387.254 / 500.32 40409.0 27.247699737548828 50 20 10 10 10 12.307819994332831 8.12491570774071 0.0 3 0.996642813995777 21.29379615879287 40409.0 126.84624744376276 0.0 - - - - - - - 326.0 80 4 GAS2L2;ASL;PPP1CB;PPP1CC;VAC14;RFC3 growth arrest-specific 2 like 2;argininosuccinate lyase;protein phosphatase 1, catalytic subunit, beta isozyme;protein phosphatase 1, catalytic subunit, gamma isozyme;Vac14 homolog (S. cerevisiae);replication factor C (activator 1) 3, 38kDa 1383 175 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9970.[MT7]-LLEVR.2y4_1.heavy 387.254 / 516.314 43341.0 27.247699737548828 50 20 10 10 10 12.307819994332831 8.12491570774071 0.0 3 0.996642813995777 21.29379615879287 43341.0 42.18396429396514 0.0 - - - - - - - 326.0 86 1 GAS2L2;ASL;PPP1CB;PPP1CC;VAC14;RFC3 growth arrest-specific 2 like 2;argininosuccinate lyase;protein phosphatase 1, catalytic subunit, beta isozyme;protein phosphatase 1, catalytic subunit, gamma isozyme;Vac14 homolog (S. cerevisiae);replication factor C (activator 1) 3, 38kDa 1385 175 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9970.[MT7]-LLEVR.2b4_1.heavy 387.254 / 599.388 6192.0 27.247699737548828 50 20 10 10 10 12.307819994332831 8.12491570774071 0.0 3 0.996642813995777 21.29379615879287 6192.0 22.855950920245398 0.0 - - - - - - - 326.0 12 2 GAS2L2;ASL;PPP1CB;PPP1CC;VAC14;RFC3 growth arrest-specific 2 like 2;argininosuccinate lyase;protein phosphatase 1, catalytic subunit, beta isozyme;protein phosphatase 1, catalytic subunit, gamma isozyme;Vac14 homolog (S. cerevisiae);replication factor C (activator 1) 3, 38kDa 1387 175 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9970.[MT7]-LLEVR.2y3_1.heavy 387.254 / 403.23 5866.0 27.247699737548828 50 20 10 10 10 12.307819994332831 8.12491570774071 0.0 3 0.996642813995777 21.29379615879287 5866.0 6.547535073952536 1.0 - - - - - - - 869.3333333333334 12 3 GAS2L2;ASL;PPP1CB;PPP1CC;VAC14;RFC3 growth arrest-specific 2 like 2;argininosuccinate lyase;protein phosphatase 1, catalytic subunit, beta isozyme;protein phosphatase 1, catalytic subunit, gamma isozyme;Vac14 homolog (S. cerevisiae);replication factor C (activator 1) 3, 38kDa 1389 176 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A895.[MT7]-HESETTTSLVLER.3y6_1.heavy 549.289 / 716.43 29361.0 24.464000701904297 46 16 10 10 10 2.4842315932651933 31.861837429057168 0.0 3 0.9631504427548906 6.409195225208448 29361.0 14.013248874968323 0.0 - - - - - - - 673.5 58 8 SSBP1 single-stranded DNA binding protein 1 1391 176 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A895.[MT7]-HESETTTSLVLER.3b4_1.heavy 549.289 / 627.286 22357.0 24.464000701904297 46 16 10 10 10 2.4842315932651933 31.861837429057168 0.0 3 0.9631504427548906 6.409195225208448 22357.0 38.7425145021466 0.0 - - - - - - - 661.2727272727273 44 11 SSBP1 single-stranded DNA binding protein 1 1393 176 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A895.[MT7]-HESETTTSLVLER.3y4_1.heavy 549.289 / 516.314 54142.0 24.464000701904297 46 16 10 10 10 2.4842315932651933 31.861837429057168 0.0 3 0.9631504427548906 6.409195225208448 54142.0 35.73545122093154 0.0 - - - - - - - 269.0 108 1 SSBP1 single-stranded DNA binding protein 1 1395 176 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A895.[MT7]-HESETTTSLVLER.3y5_1.heavy 549.289 / 629.398 22357.0 24.464000701904297 46 16 10 10 10 2.4842315932651933 31.861837429057168 0.0 3 0.9631504427548906 6.409195225208448 22357.0 31.11188529071194 0.0 - - - - - - - 673.5 44 10 SSBP1 single-stranded DNA binding protein 1 1397 177 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1095.[MT7]-DDIYIR.2y4_1.heavy 469.757 / 564.35 74972.0 24.888900756835938 44 14 10 10 10 3.455719929650054 28.93753025006473 0.0 3 0.9424194655770333 5.118211880448598 74972.0 59.769517910478626 0.0 - - - - - - - 282.0 149 1 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1399 177 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1095.[MT7]-DDIYIR.2b3_1.heavy 469.757 / 488.247 56934.0 24.888900756835938 44 14 10 10 10 3.455719929650054 28.93753025006473 0.0 3 0.9424194655770333 5.118211880448598 56934.0 87.90165039929015 0.0 - - - - - - - 282.0 113 1 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1401 177 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1095.[MT7]-DDIYIR.2y5_1.heavy 469.757 / 679.377 70744.0 24.888900756835938 44 14 10 10 10 3.455719929650054 28.93753025006473 0.0 3 0.9424194655770333 5.118211880448598 70744.0 79.38458774787152 0.0 - - - - - - - 725.1428571428571 141 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1403 177 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1095.[MT7]-DDIYIR.2b4_1.heavy 469.757 / 651.311 61725.0 24.888900756835938 44 14 10 10 10 3.455719929650054 28.93753025006473 0.0 3 0.9424194655770333 5.118211880448598 61725.0 19.28294328040705 1.0 - - - - - - - 1247.857142857143 136 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1405 178 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1096.[MT7]-QYEAER.2y4_1.heavy 470.236 / 504.241 5545.0 15.423999786376953 40 20 4 10 6 16.654167436460554 6.004503099991207 0.0 6 0.9988828962287885 36.921146041531735 5545.0 38.01863050244553 0.0 - - - - - - - 260.0 11 6 STAG1;STAG3;STAG2;STAG3L4 stromal antigen 1;stromal antigen 3;stromal antigen 2;stromal antigen 3-like 4 1407 178 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1096.[MT7]-QYEAER.2b3_1.heavy 470.236 / 565.274 6065.0 15.423999786376953 40 20 4 10 6 16.654167436460554 6.004503099991207 0.0 6 0.9988828962287885 36.921146041531735 6065.0 41.583948421520674 0.0 - - - - - - - 216.5 12 8 STAG1;STAG3;STAG2;STAG3L4 stromal antigen 1;stromal antigen 3;stromal antigen 2;stromal antigen 3-like 4 1409 178 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1096.[MT7]-QYEAER.2y5_1.heavy 470.236 / 667.305 19234.0 15.423999786376953 40 20 4 10 6 16.654167436460554 6.004503099991207 0.0 6 0.9988828962287885 36.921146041531735 19234.0 61.61756352293003 2.0 - - - - - - - 250.33333333333334 64 9 STAG1;STAG3;STAG2;STAG3L4 stromal antigen 1;stromal antigen 3;stromal antigen 2;stromal antigen 3-like 4 1411 178 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1096.[MT7]-QYEAER.2b4_1.heavy 470.236 / 636.311 6065.0 15.423999786376953 40 20 4 10 6 16.654167436460554 6.004503099991207 0.0 6 0.9988828962287885 36.921146041531735 6065.0 45.926801244997776 1.0 - - - - - - - 231.0 32 3 STAG1;STAG3;STAG2;STAG3L4 stromal antigen 1;stromal antigen 3;stromal antigen 2;stromal antigen 3-like 4 1413 179 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A893.[MT7]-TWVLEPEK[MT7]PPR.3y6_1.heavy 547.318 / 867.517 44000.0 28.47599983215332 42 12 10 10 10 1.8358253633516106 42.020995311306294 0.0 3 0.8885522314892098 3.6619146106532923 44000.0 147.57301283285537 0.0 - - - - - - - 333.0 88 3 FANCL Fanconi anemia, complementation group L 1415 179 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A893.[MT7]-TWVLEPEK[MT7]PPR.3y4_1.heavy 547.318 / 641.422 15667.0 28.47599983215332 42 12 10 10 10 1.8358253633516106 42.020995311306294 0.0 3 0.8885522314892098 3.6619146106532923 15667.0 31.056010577211396 0.0 - - - - - - - 333.0 31 4 FANCL Fanconi anemia, complementation group L 1417 179 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A893.[MT7]-TWVLEPEK[MT7]PPR.3b3_1.heavy 547.318 / 531.305 57667.0 28.47599983215332 42 12 10 10 10 1.8358253633516106 42.020995311306294 0.0 3 0.8885522314892098 3.6619146106532923 57667.0 49.83471588596249 0.0 - - - - - - - 1166.5 115 4 FANCL Fanconi anemia, complementation group L 1419 179 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A893.[MT7]-TWVLEPEK[MT7]PPR.3y8_1.heavy 547.318 / 1109.64 6667.0 28.47599983215332 42 12 10 10 10 1.8358253633516106 42.020995311306294 0.0 3 0.8885522314892098 3.6619146106532923 6667.0 25.08673975975976 0.0 - - - - - - - 333.0 13 5 FANCL Fanconi anemia, complementation group L 1421 180 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A892.[MT7]-LLLENYEEYAAR.2b6_1.heavy 814.426 / 890.51 8578.0 35.82609939575195 48 18 10 10 10 30.61792450789828 3.2660607016064636 0.0 3 0.9864191581172207 10.57806637729856 8578.0 18.200695930406958 0.0 - - - - - - - 775.875 17 8 UBE2S ubiquitin-conjugating enzyme E2S 1423 180 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A892.[MT7]-LLLENYEEYAAR.2y6_1.heavy 814.426 / 738.342 16243.0 35.82609939575195 48 18 10 10 10 30.61792450789828 3.2660607016064636 0.0 3 0.9864191581172207 10.57806637729856 16243.0 40.542833523707884 0.0 - - - - - - - 274.0 32 8 UBE2S ubiquitin-conjugating enzyme E2S 1425 180 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A892.[MT7]-LLLENYEEYAAR.2b1_1.heavy 814.426 / 258.193 59681.0 35.82609939575195 48 18 10 10 10 30.61792450789828 3.2660607016064636 0.0 3 0.9864191581172207 10.57806637729856 59681.0 72.94539672918506 0.0 - - - - - - - 678.1428571428571 119 7 UBE2S ubiquitin-conjugating enzyme E2S 1427 180 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A892.[MT7]-LLLENYEEYAAR.2y7_1.heavy 814.426 / 901.405 21354.0 35.82609939575195 48 18 10 10 10 30.61792450789828 3.2660607016064636 0.0 3 0.9864191581172207 10.57806637729856 21354.0 47.3767945505559 0.0 - - - - - - - 669.5555555555555 42 9 UBE2S ubiquitin-conjugating enzyme E2S 1429 181 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1098.[MT7]-ATEYYR.2y4_1.heavy 473.741 / 630.288 13657.0 19.29490089416504 46 16 10 10 10 1.810388144689097 43.54423179050022 0.0 3 0.9674236109356784 6.8190647482430435 13657.0 73.23318840579711 1.0 - - - - - - - 276.0 27 9 UBE2U ubiquitin-conjugating enzyme E2U (putative) 1431 181 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1098.[MT7]-ATEYYR.2y5_1.heavy 473.741 / 731.336 63735.0 19.29490089416504 46 16 10 10 10 1.810388144689097 43.54423179050022 0.0 3 0.9674236109356784 6.8190647482430435 63735.0 78.31652786899602 0.0 - - - - - - - 289.8 127 5 UBE2U ubiquitin-conjugating enzyme E2U (putative) 1433 181 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1098.[MT7]-ATEYYR.2b4_1.heavy 473.741 / 609.3 39938.0 19.29490089416504 46 16 10 10 10 1.810388144689097 43.54423179050022 0.0 3 0.9674236109356784 6.8190647482430435 39938.0 176.55094274413653 0.0 - - - - - - - 207.0 79 3 UBE2U ubiquitin-conjugating enzyme E2U (putative) 1435 181 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1098.[MT7]-ATEYYR.2y3_1.heavy 473.741 / 501.246 27936.0 19.29490089416504 46 16 10 10 10 1.810388144689097 43.54423179050022 0.0 3 0.9674236109356784 6.8190647482430435 27936.0 41.57639406278734 0.0 - - - - - - - 739.2857142857143 55 7 UBE2U ubiquitin-conjugating enzyme E2U (putative) 1437 182 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A752.[MT7]-VVSSIEQK[MT7].2y5_1.heavy 589.355 / 748.432 13876.0 22.570100784301758 43 13 10 10 10 1.7186894215007467 48.75378661628631 0.0 3 0.9238961055311904 4.444934663504189 13876.0 35.71729396439427 1.0 - - - - - - - 352.5 27 8 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1439 182 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A752.[MT7]-VVSSIEQK[MT7].2b6_1.heavy 589.355 / 759.437 7996.0 22.570100784301758 43 13 10 10 10 1.7186894215007467 48.75378661628631 0.0 3 0.9238961055311904 4.444934663504189 7996.0 46.955234042553194 0.0 - - - - - - - 297.6666666666667 15 15 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1441 182 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A752.[MT7]-VVSSIEQK[MT7].2y6_1.heavy 589.355 / 835.464 27046.0 22.570100784301758 43 13 10 10 10 1.7186894215007467 48.75378661628631 0.0 3 0.9238961055311904 4.444934663504189 27046.0 106.21313543487433 0.0 - - - - - - - 313.3333333333333 54 12 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1443 182 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A752.[MT7]-VVSSIEQK[MT7].2y7_1.heavy 589.355 / 934.533 39982.0 22.570100784301758 43 13 10 10 10 1.7186894215007467 48.75378661628631 0.0 3 0.9238961055311904 4.444934663504189 39982.0 136.06073895485503 0.0 - - - - - - - 381.875 79 8 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1445 183 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A751.[MT7]-LFEQNVQR.2y4_1.heavy 589.326 / 516.289 11469.0 26.03660011291504 48 18 10 10 10 6.410697161527501 15.59892746145142 0.0 3 0.9800391556086322 8.720629785857339 11469.0 17.02301373042726 1.0 - - - - - - - 310.0 25 4 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1447 183 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A751.[MT7]-LFEQNVQR.2y5_1.heavy 589.326 / 644.347 39676.0 26.03660011291504 48 18 10 10 10 6.410697161527501 15.59892746145142 0.0 3 0.9800391556086322 8.720629785857339 39676.0 33.36196989247312 0.0 - - - - - - - 841.4285714285714 79 7 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1449 183 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A751.[MT7]-LFEQNVQR.2y6_1.heavy 589.326 / 773.39 43085.0 26.03660011291504 48 18 10 10 10 6.410697161527501 15.59892746145142 0.0 3 0.9800391556086322 8.720629785857339 43085.0 98.3310887096774 0.0 - - - - - - - 310.0 86 5 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1451 183 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A751.[MT7]-LFEQNVQR.2y7_1.heavy 589.326 / 920.458 118407.0 26.03660011291504 48 18 10 10 10 6.410697161527501 15.59892746145142 0.0 3 0.9800391556086322 8.720629785857339 118407.0 387.5138181818181 0.0 - - - - - - - 310.0 236 5 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1453 184 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A754.[MT7]-GSLLDFLK[MT7].2y4_1.heavy 590.863 / 666.394 107473.0 40.55509948730469 50 20 10 10 10 16.60330687025164 6.022896570030353 0.0 3 0.997924061076223 27.08194953131428 107473.0 335.6912543863358 0.0 - - - - - - - 225.4 214 5 FYN;HCK;LYN;SRC;YES1 FYN oncogene related to SRC, FGR, YES;hemopoietic cell kinase;v-yes-1 Yamaguchi sarcoma viral related oncogene homolog;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 1455 184 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A754.[MT7]-GSLLDFLK[MT7].2b4_1.heavy 590.863 / 515.331 73204.0 40.55509948730469 50 20 10 10 10 16.60330687025164 6.022896570030353 0.0 3 0.997924061076223 27.08194953131428 73204.0 82.3431819875871 0.0 - - - - - - - 161.0 146 6 FYN;HCK;LYN;SRC;YES1 FYN oncogene related to SRC, FGR, YES;hemopoietic cell kinase;v-yes-1 Yamaguchi sarcoma viral related oncogene homolog;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 1457 184 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A754.[MT7]-GSLLDFLK[MT7].2y3_1.heavy 590.863 / 551.367 192583.0 40.55509948730469 50 20 10 10 10 16.60330687025164 6.022896570030353 0.0 3 0.997924061076223 27.08194953131428 192583.0 239.50876062577558 0.0 - - - - - - - 402.5 385 4 FYN;HCK;LYN;SRC;YES1 FYN oncogene related to SRC, FGR, YES;hemopoietic cell kinase;v-yes-1 Yamaguchi sarcoma viral related oncogene homolog;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 1459 184 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A754.[MT7]-GSLLDFLK[MT7].2b5_1.heavy 590.863 / 630.358 228461.0 40.55509948730469 50 20 10 10 10 16.60330687025164 6.022896570030353 0.0 3 0.997924061076223 27.08194953131428 228461.0 1408.0268358584124 0.0 - - - - - - - 187.83333333333334 456 6 FYN;HCK;LYN;SRC;YES1 FYN oncogene related to SRC, FGR, YES;hemopoietic cell kinase;v-yes-1 Yamaguchi sarcoma viral related oncogene homolog;v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 1461 185 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1090.[MT7]-AEEYLR.2y4_1.heavy 462.749 / 580.309 17709.0 22.705699920654297 43 13 10 10 10 1.4417407104145332 47.33158844656597 0.0 3 0.9271015557141863 4.542856006322153 17709.0 34.10539387763889 0.0 - - - - - - - 741.8571428571429 35 7 ORC6 origin recognition complex, subunit 6 1463 185 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1090.[MT7]-AEEYLR.2b3_1.heavy 462.749 / 474.232 35419.0 22.705699920654297 43 13 10 10 10 1.4417407104145332 47.33158844656597 0.0 3 0.9271015557141863 4.542856006322153 35419.0 25.98135398462202 0.0 - - - - - - - 877.2857142857143 70 7 ORC6 origin recognition complex, subunit 6 1465 185 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1090.[MT7]-AEEYLR.2y5_1.heavy 462.749 / 709.352 38252.0 22.705699920654297 43 13 10 10 10 1.4417407104145332 47.33158844656597 0.0 3 0.9271015557141863 4.542856006322153 38252.0 45.933604301259294 0.0 - - - - - - - 354.0 76 8 ORC6 origin recognition complex, subunit 6 1467 185 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1090.[MT7]-AEEYLR.2b4_1.heavy 462.749 / 637.295 47697.0 22.705699920654297 43 13 10 10 10 1.4417407104145332 47.33158844656597 0.0 3 0.9271015557141863 4.542856006322153 47697.0 223.90120021814323 0.0 - - - - - - - 300.3636363636364 95 11 ORC6 origin recognition complex, subunit 6 1469 186 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9956.[MT7]-ELVDGAPLWLLK[MT7].3y3_1.heavy 547.999 / 517.383 62885.0 42.549500465393066 40 14 10 6 10 3.362752533227387 29.737543578333263 0.037601470947265625 3 0.9413609838475355 5.071350469001878 62885.0 59.69299560351718 0.0 - - - - - - - 583.5 125 8 FBXO2 F-box protein 2 1471 186 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9956.[MT7]-ELVDGAPLWLLK[MT7].3b6_1.heavy 547.999 / 729.39 69724.0 42.549500465393066 40 14 10 6 10 3.362752533227387 29.737543578333263 0.037601470947265625 3 0.9413609838475355 5.071350469001878 69724.0 131.58340333430405 0.0 - - - - - - - 646.125 139 8 FBXO2 F-box protein 2 1473 186 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9956.[MT7]-ELVDGAPLWLLK[MT7].3b5_1.heavy 547.999 / 658.353 31192.0 42.549500465393066 40 14 10 6 10 3.362752533227387 29.737543578333263 0.037601470947265625 3 0.9413609838475355 5.071350469001878 31192.0 193.11409196367413 0.0 - - - - - - - 292.25 62 8 FBXO2 F-box protein 2 1475 186 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9956.[MT7]-ELVDGAPLWLLK[MT7].3y4_1.heavy 547.999 / 703.462 40200.0 42.549500465393066 40 14 10 6 10 3.362752533227387 29.737543578333263 0.037601470947265625 3 0.9413609838475355 5.071350469001878 40200.0 167.99051971020478 0.0 - - - - - - - 267.2 80 10 FBXO2 F-box protein 2 1477 187 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A880.[MT7]-RTEFITQEENR.3y6_1.heavy 522.938 / 776.353 66440.0 21.589624404907227 29 13 0 6 10 1.8923392434098176 38.00233811035187 0.03549957275390625 3 0.9285986838467796 4.590824103814538 66440.0 95.23317478293696 0.0 - - - - - - - 294.3333333333333 132 6 DBF4 DBF4 homolog (S. cerevisiae) 1479 187 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A880.[MT7]-RTEFITQEENR.3b4_1.heavy 522.938 / 678.369 60922.0 21.589624404907227 29 13 0 6 10 1.8923392434098176 38.00233811035187 0.03549957275390625 3 0.9285986838467796 4.590824103814538 60922.0 75.91044660300471 0.0 - - - - - - - 331.0 121 6 DBF4 DBF4 homolog (S. cerevisiae) 1481 187 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A880.[MT7]-RTEFITQEENR.3y4_1.heavy 522.938 / 547.247 63571.0 21.589624404907227 29 13 0 6 10 1.8923392434098176 38.00233811035187 0.03549957275390625 3 0.9285986838467796 4.590824103814538 63571.0 86.81317195167988 0.0 - - - - - - - 315.2857142857143 127 7 DBF4 DBF4 homolog (S. cerevisiae) 1483 187 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A880.[MT7]-RTEFITQEENR.3b3_1.heavy 522.938 / 531.301 32889.0 21.589624404907227 29 13 0 6 10 1.8923392434098176 38.00233811035187 0.03549957275390625 3 0.9285986838467796 4.590824103814538 32889.0 23.46794874050292 2.0 - - - - - - - 309.0 544 5 DBF4 DBF4 homolog (S. cerevisiae) 1485 188 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9959.[MT7]-VLAALPAAELVQAC[CAM]R.3y6_1.heavy 575.998 / 746.398 26378.0 37.200300216674805 46 20 10 6 10 6.463846272217947 15.47066495529246 0.035198211669921875 3 0.992986056495522 14.727433415604395 26378.0 103.77163910969793 0.0 - - - - - - - 221.0 52 10 FBXO2 F-box protein 2 1487 188 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9959.[MT7]-VLAALPAAELVQAC[CAM]R.3b5_1.heavy 575.998 / 612.42 78793.0 37.200300216674805 46 20 10 6 10 6.463846272217947 15.47066495529246 0.035198211669921875 3 0.992986056495522 14.727433415604395 78793.0 160.86560929005083 0.0 - - - - - - - 283.3333333333333 157 6 FBXO2 F-box protein 2 1489 188 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9959.[MT7]-VLAALPAAELVQAC[CAM]R.3y4_1.heavy 575.998 / 534.245 48161.0 37.200300216674805 46 20 10 6 10 6.463846272217947 15.47066495529246 0.035198211669921875 3 0.992986056495522 14.727433415604395 48161.0 62.10604511542158 0.0 - - - - - - - 267.14285714285717 96 7 FBXO2 F-box protein 2 1491 188 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9959.[MT7]-VLAALPAAELVQAC[CAM]R.3y5_1.heavy 575.998 / 633.314 52926.0 37.200300216674805 46 20 10 6 10 6.463846272217947 15.47066495529246 0.035198211669921875 3 0.992986056495522 14.727433415604395 52926.0 118.1588606176278 0.0 - - - - - - - 647.0 105 10 FBXO2 F-box protein 2 1493 189 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A747.[MT7]-NLPWVEK[MT7].2y4_1.heavy 587.347 / 705.405 9875.0 31.06290054321289 43 20 10 5 8 13.849971225868963 7.220231606923492 0.049999237060546875 4 0.9916956283182936 13.53343297750067 9875.0 9.7133591812655 1.0 - - - - - - - 309.0 19 1 RFC5 replication factor C (activator 1) 5, 36.5kDa 1495 189 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A747.[MT7]-NLPWVEK[MT7].2y5_1.heavy 587.347 / 802.458 85788.0 31.06290054321289 43 20 10 5 8 13.849971225868963 7.220231606923492 0.049999237060546875 4 0.9916956283182936 13.53343297750067 85788.0 108.98030635950954 0.0 - - - - - - - 309.0 171 2 RFC5 replication factor C (activator 1) 5, 36.5kDa 1497 189 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A747.[MT7]-NLPWVEK[MT7].2b4_1.heavy 587.347 / 655.368 5246.0 31.06290054321289 43 20 10 5 8 13.849971225868963 7.220231606923492 0.049999237060546875 4 0.9916956283182936 13.53343297750067 5246.0 2.5106832923394493 2.0 - - - - - - - 309.0 33 5 RFC5 replication factor C (activator 1) 5, 36.5kDa 1499 189 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A747.[MT7]-NLPWVEK[MT7].2y3_1.heavy 587.347 / 519.326 13269.0 31.06290054321289 43 20 10 5 8 13.849971225868963 7.220231606923492 0.049999237060546875 4 0.9916956283182936 13.53343297750067 13269.0 19.470740147592565 1.0 - - - - - - - 309.0 108 2 RFC5 replication factor C (activator 1) 5, 36.5kDa 1501 190 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1082.[MT7]-STSPVK[MT7].2y4_1.heavy 453.779 / 574.368 21434.0 15.252400398254395 48 20 10 10 8 11.834062206289769 8.450183737149048 0.0 4 0.9965793654396204 21.095273263341355 21434.0 65.7559694638915 0.0 - - - - - - - 271.22222222222223 42 9 CCNE2 cyclin E2 1503 190 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1082.[MT7]-STSPVK[MT7].2y5_1.heavy 453.779 / 675.416 18123.0 15.252400398254395 48 20 10 10 8 11.834062206289769 8.450183737149048 0.0 4 0.9965793654396204 21.095273263341355 18123.0 51.02239583081797 1.0 - - - - - - - 249.0 62 7 CCNE2 cyclin E2 1505 190 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1082.[MT7]-STSPVK[MT7].2y3_1.heavy 453.779 / 487.336 42345.0 15.252400398254395 48 20 10 10 8 11.834062206289769 8.450183737149048 0.0 4 0.9965793654396204 21.095273263341355 42345.0 74.439084526924 0.0 - - - - - - - 261.5 84 10 CCNE2 cyclin E2 1507 190 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1082.[MT7]-STSPVK[MT7].2b5_1.heavy 453.779 / 616.342 7493.0 15.252400398254395 48 20 10 10 8 11.834062206289769 8.450183737149048 0.0 4 0.9965793654396204 21.095273263341355 7493.0 44.563325912366636 2.0 - - - - - - - 217.75 64 8 CCNE2 cyclin E2 1509 191 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A746.[MT7]-VVVVILDK[MT7].2y4_1.heavy 586.896 / 632.41 227565.0 33.54970169067383 48 18 10 10 10 2.8607689741854356 23.365017348885786 0.0 3 0.9849581623306762 10.049999294672043 227565.0 200.62394918269766 0.0 - - - - - - - 333.2 455 5 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 1511 191 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A746.[MT7]-VVVVILDK[MT7].2y5_1.heavy 586.896 / 731.478 161391.0 33.54970169067383 48 18 10 10 10 2.8607689741854356 23.365017348885786 0.0 3 0.9849581623306762 10.049999294672043 161391.0 147.84615728426283 0.0 - - - - - - - 297.5 322 4 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 1513 191 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A746.[MT7]-VVVVILDK[MT7].2b4_1.heavy 586.896 / 541.383 168770.0 33.54970169067383 48 18 10 10 10 2.8607689741854356 23.365017348885786 0.0 3 0.9849581623306762 10.049999294672043 168770.0 151.26585484375772 0.0 - - - - - - - 396.6666666666667 337 3 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 1515 191 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A746.[MT7]-VVVVILDK[MT7].2y3_1.heavy 586.896 / 519.326 165199.0 33.54970169067383 48 18 10 10 10 2.8607689741854356 23.365017348885786 0.0 3 0.9849581623306762 10.049999294672043 165199.0 380.1427969187675 0.0 - - - - - - - 396.6666666666667 330 3 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 1517 192 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1083.[MT7]-SFGSPNR.2y5_1.heavy 454.739 / 530.268 12335.0 17.860950469970703 43 18 10 5 10 6.54635048584557 15.2756868450931 0.04949951171875 3 0.9813886959121196 9.032294544445199 12335.0 19.92524597167391 0.0 - - - - - - - 342.6666666666667 24 3 CDK7 cyclin-dependent kinase 7 1519 192 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1083.[MT7]-SFGSPNR.2b4_1.heavy 454.739 / 523.263 8017.0 17.860950469970703 43 18 10 5 10 6.54635048584557 15.2756868450931 0.04949951171875 3 0.9813886959121196 9.032294544445199 8017.0 14.293390499958576 0.0 - - - - - - - 206.0 16 5 CDK7 cyclin-dependent kinase 7 1521 192 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1083.[MT7]-SFGSPNR.2b6_1.heavy 454.739 / 734.359 4523.0 17.860950469970703 43 18 10 5 10 6.54635048584557 15.2756868450931 0.04949951171875 3 0.9813886959121196 9.032294544445199 4523.0 13.202569001060336 0.0 - - - - - - - 308.5 9 8 CDK7 cyclin-dependent kinase 7 1523 192 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1083.[MT7]-SFGSPNR.2y6_1.heavy 454.739 / 677.336 21174.0 17.860950469970703 43 18 10 5 10 6.54635048584557 15.2756868450931 0.04949951171875 3 0.9813886959121196 9.032294544445199 21174.0 45.53250930159902 0.0 - - - - - - - 411.0 42 1 CDK7 cyclin-dependent kinase 7 1525 193 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1080.[MT7]-IETELR.2y4_1.heavy 452.765 / 518.293 19071.0 23.83650016784668 47 17 10 10 10 2.9975614858327897 33.36044997663084 0.0 3 0.9707035248753887 7.192645709192522 19071.0 13.874206741780847 0.0 - - - - - - - 644.0 38 8 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1527 193 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1080.[MT7]-IETELR.2y5_1.heavy 452.765 / 647.336 54635.0 23.83650016784668 47 17 10 10 10 2.9975614858327897 33.36044997663084 0.0 3 0.9707035248753887 7.192645709192522 54635.0 37.627428271262694 0.0 - - - - - - - 1656.5714285714287 109 7 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1529 193 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1080.[MT7]-IETELR.2b4_1.heavy 452.765 / 617.326 52831.0 23.83650016784668 47 17 10 10 10 2.9975614858327897 33.36044997663084 0.0 3 0.9707035248753887 7.192645709192522 52831.0 118.68294846403893 0.0 - - - - - - - 601.0 105 9 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1531 193 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1080.[MT7]-IETELR.2y2_1.heavy 452.765 / 288.203 96899.0 23.83650016784668 47 17 10 10 10 2.9975614858327897 33.36044997663084 0.0 3 0.9707035248753887 7.192645709192522 96899.0 93.32119686073193 0.0 - - - - - - - 258.0 193 2 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1533 194 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1081.[MT7]-C[CAM]VGLSAR.2b3_1.heavy 453.751 / 461.23 8636.0 20.077199935913086 46 16 10 10 10 2.6230503648373023 38.12355315038056 0.0 3 0.9690410856633844 6.9958848710493164 8636.0 17.49270919735055 2.0 - - - - - - - 763.875 17 8 ORC6 origin recognition complex, subunit 6 1535 194 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1081.[MT7]-C[CAM]VGLSAR.2y5_1.heavy 453.751 / 503.294 20853.0 20.077199935913086 46 16 10 10 10 2.6230503648373023 38.12355315038056 0.0 3 0.9690410856633844 6.9958848710493164 20853.0 25.961279346532514 1.0 - - - - - - - 722.4285714285714 41 7 ORC6 origin recognition complex, subunit 6 1537 194 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1081.[MT7]-C[CAM]VGLSAR.2b4_1.heavy 453.751 / 574.314 6108.0 20.077199935913086 46 16 10 10 10 2.6230503648373023 38.12355315038056 0.0 3 0.9690410856633844 6.9958848710493164 6108.0 13.627025316455697 2.0 - - - - - - - 289.75 20 8 ORC6 origin recognition complex, subunit 6 1539 194 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1081.[MT7]-C[CAM]VGLSAR.2y6_1.heavy 453.751 / 602.362 29910.0 20.077199935913086 46 16 10 10 10 2.6230503648373023 38.12355315038056 0.0 3 0.9690410856633844 6.9958848710493164 29910.0 50.15427834587143 0.0 - - - - - - - 316.0 59 8 ORC6 origin recognition complex, subunit 6 1541 195 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1087.[MT7]-SIVPSLR.2y4_1.heavy 458.291 / 472.288 57333.0 28.081499099731445 46 16 10 10 10 3.511653339494392 28.4766149537978 0.0 3 0.9683937610111301 6.923495360752959 57333.0 58.721969851207646 0.0 - - - - - - - 333.0 114 2 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 1543 195 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1087.[MT7]-SIVPSLR.2y5_1.heavy 458.291 / 571.356 22333.0 28.081499099731445 46 16 10 10 10 3.511653339494392 28.4766149537978 0.0 3 0.9683937610111301 6.923495360752959 22333.0 3.3127283333333333 1.0 - - - - - - - 667.0 48 1 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 1545 195 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1087.[MT7]-SIVPSLR.2b6_1.heavy 458.291 / 741.463 4333.0 28.081499099731445 46 16 10 10 10 3.511653339494392 28.4766149537978 0.0 3 0.9683937610111301 6.923495360752959 4333.0 4.361886666666666 1.0 - - - - - - - 333.0 8 5 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 1547 195 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1087.[MT7]-SIVPSLR.2y6_1.heavy 458.291 / 684.44 43667.0 28.081499099731445 46 16 10 10 10 3.511653339494392 28.4766149537978 0.0 3 0.9683937610111301 6.923495360752959 43667.0 35.345626314717016 0.0 - - - - - - - 333.0 87 1 UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 2 1549 196 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A881.[MT7]-DRTGFAVIHDAAR.4y4_1.heavy 393.965 / 432.22 106046.0 23.347900390625 42 12 10 10 10 1.6103385557095937 62.098742929206665 0.0 3 0.8969402022592636 3.81079269085537 106046.0 133.25976269469461 0.0 - - - - - - - 292.8 212 5 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 1551 196 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A881.[MT7]-DRTGFAVIHDAAR.4b5_1.heavy 393.965 / 721.375 6826.0 23.347900390625 42 12 10 10 10 1.6103385557095937 62.098742929206665 0.0 3 0.8969402022592636 3.81079269085537 6826.0 29.472534367921778 0.0 - - - - - - - 325.3333333333333 13 6 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 1553 196 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A881.[MT7]-DRTGFAVIHDAAR.4y3_1.heavy 393.965 / 317.193 59240.0 23.347900390625 42 12 10 10 10 1.6103385557095937 62.098742929206665 0.0 3 0.8969402022592636 3.81079269085537 59240.0 57.6164250450192 0.0 - - - - - - - 488.0 118 3 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 1555 196 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A881.[MT7]-DRTGFAVIHDAAR.4b6_1.heavy 393.965 / 792.412 17309.0 23.347900390625 42 12 10 10 10 1.6103385557095937 62.098742929206665 0.0 3 0.8969402022592636 3.81079269085537 17309.0 101.44209016393442 0.0 - - - - - - - 305.0 34 8 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 1557 197 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1084.[MT7]-TQSGTK[MT7].2y4_1.heavy 455.266 / 536.316 23377.0 11.856949806213379 41 13 10 8 10 1.6384715676794952 61.03249026263311 0.01309967041015625 3 0.905447853198957 3.9814732582760057 23377.0 84.78112453264308 0.0 - - - - - - - 153.51020408163265 46 49 SOCS3 suppressor of cytokine signaling 3 1559 197 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1084.[MT7]-TQSGTK[MT7].2y5_1.heavy 455.266 / 664.375 18865.0 11.856949806213379 41 13 10 8 10 1.6384715676794952 61.03249026263311 0.01309967041015625 3 0.905447853198957 3.9814732582760057 18865.0 46.58024691358024 0.0 - - - - - - - 126.93939393939394 37 33 SOCS3 suppressor of cytokine signaling 3 1561 197 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1084.[MT7]-TQSGTK[MT7].2b4_1.heavy 455.266 / 518.269 3984.0 11.856949806213379 41 13 10 8 10 1.6384715676794952 61.03249026263311 0.01309967041015625 3 0.905447853198957 3.9814732582760057 3984.0 8.99243514806048 0.0 - - - - - - - 686.6666666666666 7 9 SOCS3 suppressor of cytokine signaling 3 1563 197 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1084.[MT7]-TQSGTK[MT7].2b5_1.heavy 455.266 / 619.317 2805.0 11.856949806213379 41 13 10 8 10 1.6384715676794952 61.03249026263311 0.01309967041015625 3 0.905447853198957 3.9814732582760057 2805.0 -0.7560646900269542 4.0 - - - - - - - 181.01960784313727 10 51 SOCS3 suppressor of cytokine signaling 3 1565 198 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A883.[MT7]-RLITDSYPVVK[MT7].3b6_1.heavy 526.987 / 830.485 101812.0 26.81599998474121 41 11 10 10 10 1.1190711530614823 59.50592599829535 0.0 3 0.8637017326649715 3.3041236790189714 101812.0 92.9037595183789 0.0 - - - - - - - 320.0 203 3 POLD4 polymerase (DNA-directed), delta 4 1567 198 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A883.[MT7]-RLITDSYPVVK[MT7].3b5_1.heavy 526.987 / 743.453 102132.0 26.81599998474121 41 11 10 10 10 1.1190711530614823 59.50592599829535 0.0 3 0.8637017326649715 3.3041236790189714 102132.0 379.74357874707266 0.0 - - - - - - - 320.0 204 5 POLD4 polymerase (DNA-directed), delta 4 1569 198 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A883.[MT7]-RLITDSYPVVK[MT7].3y4_1.heavy 526.987 / 586.404 317922.0 26.81599998474121 41 11 10 10 10 1.1190711530614823 59.50592599829535 0.0 3 0.8637017326649715 3.3041236790189714 317922.0 531.6343145573059 0.0 - - - - - - - 320.0 635 2 POLD4 polymerase (DNA-directed), delta 4 1571 198 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A883.[MT7]-RLITDSYPVVK[MT7].3b7_1.heavy 526.987 / 993.549 37779.0 26.81599998474121 41 11 10 10 10 1.1190711530614823 59.50592599829535 0.0 3 0.8637017326649715 3.3041236790189714 37779.0 88.52149077868853 0.0 - - - - - - - 320.0 75 2 POLD4 polymerase (DNA-directed), delta 4 1573 199 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A742.[MT7]-TSLAPYVK[MT7].2y4_1.heavy 583.855 / 650.399 141096.0 25.94770050048828 46 16 10 10 10 4.354355291842087 22.965512296929617 0.0 3 0.9677727350028489 6.856103230897419 141096.0 208.74894168466523 0.0 - - - - - - - 309.0 282 4 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1575 199 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A742.[MT7]-TSLAPYVK[MT7].2y5_1.heavy 583.855 / 721.437 33962.0 25.94770050048828 46 16 10 10 10 4.354355291842087 22.965512296929617 0.0 3 0.9677727350028489 6.856103230897419 33962.0 100.50020591569587 0.0 - - - - - - - 309.0 67 4 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1577 199 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A742.[MT7]-TSLAPYVK[MT7].2b4_1.heavy 583.855 / 517.31 98489.0 25.94770050048828 46 16 10 10 10 4.354355291842087 22.965512296929617 0.0 3 0.9677727350028489 6.856103230897419 98489.0 115.75368714439071 0.0 - - - - - - - 309.0 196 2 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1579 199 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A742.[MT7]-TSLAPYVK[MT7].2y7_1.heavy 583.855 / 921.553 24391.0 25.94770050048828 46 16 10 10 10 4.354355291842087 22.965512296929617 0.0 3 0.9677727350028489 6.856103230897419 24391.0 84.4703316169438 0.0 - - - - - - - 309.0 48 2 PRIM1 primase, DNA, polypeptide 1 (49kDa) 1581 200 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 ODP2_ECOLI.AEAPAAAPAAK.2y7.peptide 484.26 / 599.35 163380.0 14.963800430297852 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 163380.0 501.6196274279394 0.0 - - - - - - - 340.0 326 2 1583 200 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 ODP2_ECOLI.AEAPAAAPAAK.2y8.peptide 484.26 / 696.4 316890.0 14.963800430297852 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 316890.0 663.9400817732563 0.0 - - - - - - - 170.0 633 2 1585 200 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 ODP2_ECOLI.AEAPAAAPAAK.2y6.peptide 484.26 / 528.31 141937.0 14.963800430297852 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 141937.0 309.8081857151328 0.0 - - - - - - - 297.5 283 4 1587 201 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A871.[MT7]-LFGPVDSEQLSR.2y9_1.heavy 746.4 / 1030.52 26893.0 32.15840148925781 48 18 10 10 10 4.693790588108961 21.304742536519527 0.0 3 0.9873499311575815 10.961173158023549 26893.0 61.759137302551636 0.0 - - - - - - - 754.5 53 8 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 1589 201 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A871.[MT7]-LFGPVDSEQLSR.2y6_1.heavy 746.4 / 719.368 43632.0 32.15840148925781 48 18 10 10 10 4.693790588108961 21.304742536519527 0.0 3 0.9873499311575815 10.961173158023549 43632.0 40.94400373971115 0.0 - - - - - - - 1215.4285714285713 87 7 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 1591 201 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A871.[MT7]-LFGPVDSEQLSR.2y10_1.heavy 746.4 / 1087.54 34576.0 32.15840148925781 48 18 10 10 10 4.693790588108961 21.304742536519527 0.0 3 0.9873499311575815 10.961173158023549 34576.0 29.08726120707781 1.0 - - - - - - - 274.0 69 3 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 1593 201 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A871.[MT7]-LFGPVDSEQLSR.2y11_1.heavy 746.4 / 1234.61 37320.0 32.15840148925781 48 18 10 10 10 4.693790588108961 21.304742536519527 0.0 3 0.9873499311575815 10.961173158023549 37320.0 86.62842838571669 0.0 - - - - - - - 274.0 74 3 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 1595 202 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A877.[MT7]-VSELQVLLGFAGR.2y9_1.heavy 766.949 / 960.563 28997.0 45.071800231933594 48 18 10 10 10 12.312623178188717 8.12174615862083 0.0 3 0.9837403645308636 9.665331400229753 28997.0 122.19752215590523 0.0 - - - - - - - 204.0 57 10 PIAS3;PIAS2 protein inhibitor of activated STAT, 3;protein inhibitor of activated STAT, 2 1597 202 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A877.[MT7]-VSELQVLLGFAGR.2y10_1.heavy 766.949 / 1073.65 16466.0 45.071800231933594 48 18 10 10 10 12.312623178188717 8.12174615862083 0.0 3 0.9837403645308636 9.665331400229753 16466.0 130.30730985220518 0.0 - - - - - - - 262.3 32 10 PIAS3;PIAS2 protein inhibitor of activated STAT, 3;protein inhibitor of activated STAT, 2 1599 202 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A877.[MT7]-VSELQVLLGFAGR.2b5_1.heavy 766.949 / 701.395 29434.0 45.071800231933594 48 18 10 10 10 12.312623178188717 8.12174615862083 0.0 3 0.9837403645308636 9.665331400229753 29434.0 121.6272140691328 0.0 - - - - - - - 275.1111111111111 58 9 PIAS3;PIAS2 protein inhibitor of activated STAT, 3;protein inhibitor of activated STAT, 2 1601 202 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A877.[MT7]-VSELQVLLGFAGR.2y7_1.heavy 766.949 / 733.435 24917.0 45.071800231933594 48 18 10 10 10 12.312623178188717 8.12174615862083 0.0 3 0.9837403645308636 9.665331400229753 24917.0 62.98144611793476 0.0 - - - - - - - 242.88888888888889 49 9 PIAS3;PIAS2 protein inhibitor of activated STAT, 3;protein inhibitor of activated STAT, 2 1603 203 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A876.[MT7]-QLNLENVVGDK[MT7].3b6_1.heavy 506.291 / 856.464 39644.0 30.83679962158203 43 13 10 10 10 2.248148342332537 36.45927756948623 0.0 3 0.9141793173683858 4.182253714574625 39644.0 131.29957264957264 0.0 - - - - - - - 312.0 79 4 ORC4 origin recognition complex, subunit 4 1605 203 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A876.[MT7]-QLNLENVVGDK[MT7].3b4_1.heavy 506.291 / 613.379 30591.0 30.83679962158203 43 13 10 10 10 2.248148342332537 36.45927756948623 0.0 3 0.9141793173683858 4.182253714574625 30591.0 64.38490384615383 0.0 - - - - - - - 713.1428571428571 61 7 ORC4 origin recognition complex, subunit 4 1607 203 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A876.[MT7]-QLNLENVVGDK[MT7].3y4_1.heavy 506.291 / 562.332 65553.0 30.83679962158203 43 13 10 10 10 2.248148342332537 36.45927756948623 0.0 3 0.9141793173683858 4.182253714574625 65553.0 75.37376696488516 0.0 - - - - - - - 757.7142857142857 131 7 ORC4 origin recognition complex, subunit 4 1609 203 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A876.[MT7]-QLNLENVVGDK[MT7].3b3_1.heavy 506.291 / 500.295 27470.0 30.83679962158203 43 13 10 10 10 2.248148342332537 36.45927756948623 0.0 3 0.9141793173683858 4.182253714574625 27470.0 38.18368450045109 0.0 - - - - - - - 312.0 54 2 ORC4 origin recognition complex, subunit 4 1611 204 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A778.[MT7]-VDTEDIEK[MT7].2y3_1.heavy 618.832 / 533.341 57277.0 22.114924430847168 40 14 10 6 10 1.1131630455337354 55.155789966450854 0.035099029541015625 3 0.9309196924152834 4.668236595861468 57277.0 87.53987818037255 0.0 - - - - - - - 1266.2857142857142 114 7 SAE1 SUMO1 activating enzyme subunit 1 1613 204 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A778.[MT7]-VDTEDIEK[MT7].2y6_1.heavy 618.832 / 878.459 42049.0 22.114924430847168 40 14 10 6 10 1.1131630455337354 55.155789966450854 0.035099029541015625 3 0.9309196924152834 4.668236595861468 42049.0 79.56466446644666 0.0 - - - - - - - 341.0 84 8 SAE1 SUMO1 activating enzyme subunit 1 1615 204 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A778.[MT7]-VDTEDIEK[MT7].2b5_1.heavy 618.832 / 704.322 65914.0 22.114924430847168 40 14 10 6 10 1.1131630455337354 55.155789966450854 0.035099029541015625 3 0.9309196924152834 4.668236595861468 65914.0 278.7143451014457 0.0 - - - - - - - 844.1428571428571 131 7 SAE1 SUMO1 activating enzyme subunit 1 1617 204 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A778.[MT7]-VDTEDIEK[MT7].2y7_1.heavy 618.832 / 993.486 66824.0 22.114924430847168 40 14 10 6 10 1.1131630455337354 55.155789966450854 0.035099029541015625 3 0.9309196924152834 4.668236595861468 66824.0 205.6866292871045 0.0 - - - - - - - 328.3333333333333 133 9 SAE1 SUMO1 activating enzyme subunit 1 1619 205 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A879.[MT7]-TLEGLSDLSTIK[MT7].2y5_1.heavy 782.955 / 705.463 7744.0 33.80564880371094 35 16 6 5 8 1.841808992223627 36.98116472932074 0.04669952392578125 4 0.9623724944126703 6.3421772833503685 7744.0 33.62645595551653 0.0 - - - - - - - 352.3636363636364 15 11 PIAS2 protein inhibitor of activated STAT, 2 1621 205 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A879.[MT7]-TLEGLSDLSTIK[MT7].2b4_1.heavy 782.955 / 545.305 5694.0 33.80564880371094 35 16 6 5 8 1.841808992223627 36.98116472932074 0.04669952392578125 4 0.9623724944126703 6.3421772833503685 5694.0 12.612587565269626 2.0 - - - - - - - 358.2857142857143 23 7 PIAS2 protein inhibitor of activated STAT, 2 1623 205 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A879.[MT7]-TLEGLSDLSTIK[MT7].2y6_1.heavy 782.955 / 820.49 4100.0 33.80564880371094 35 16 6 5 8 1.841808992223627 36.98116472932074 0.04669952392578125 4 0.9623724944126703 6.3421772833503685 4100.0 13.974974955690838 0.0 - - - - - - - 290.1818181818182 8 11 PIAS2 protein inhibitor of activated STAT, 2 1625 205 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A879.[MT7]-TLEGLSDLSTIK[MT7].2b7_1.heavy 782.955 / 860.448 7289.0 33.80564880371094 35 16 6 5 8 1.841808992223627 36.98116472932074 0.04669952392578125 4 0.9623724944126703 6.3421772833503685 7289.0 15.452607034227853 2.0 - - - - - - - 342.0 14 10 PIAS2 protein inhibitor of activated STAT, 2 1627 206 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A775.[MT7]-LSSPVPAVC[CAM]R.2y8_1.heavy 615.343 / 885.461 11427.0 25.620849609375 45 20 10 5 10 10.525937792158933 9.500341154827346 0.043300628662109375 3 0.9952713070776238 17.939921072124807 11427.0 30.668344407510027 0.0 - - - - - - - 301.0 22 3 RNASEH2A ribonuclease H2, subunit A 1629 206 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A775.[MT7]-LSSPVPAVC[CAM]R.2y5_1.heavy 615.343 / 602.308 18643.0 25.620849609375 45 20 10 5 10 10.525937792158933 9.500341154827346 0.043300628662109375 3 0.9952713070776238 17.939921072124807 18643.0 13.891500002633368 0.0 - - - - - - - 301.0 37 5 RNASEH2A ribonuclease H2, subunit A 1631 206 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A775.[MT7]-LSSPVPAVC[CAM]R.2y9_1.heavy 615.343 / 972.493 35182.0 25.620849609375 45 20 10 5 10 10.525937792158933 9.500341154827346 0.043300628662109375 3 0.9952713070776238 17.939921072124807 35182.0 77.73276032516222 0.0 - - - - - - - 301.0 70 4 RNASEH2A ribonuclease H2, subunit A 1633 206 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A775.[MT7]-LSSPVPAVC[CAM]R.2y7_1.heavy 615.343 / 798.429 31273.0 25.620849609375 45 20 10 5 10 10.525937792158933 9.500341154827346 0.043300628662109375 3 0.9952713070776238 17.939921072124807 31273.0 75.60527048415243 0.0 - - - - - - - 713.875 62 8 RNASEH2A ribonuclease H2, subunit A 1635 207 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A878.[MT7]-SDGK[MT7]PC[CAM]PPFK[MT7].3y6_1.heavy 522.289 / 889.472 5250.0 21.32485008239746 46 20 10 6 10 7.628102596795325 13.109419902402916 0.037899017333984375 3 0.9904044240337477 12.588644163166872 5250.0 4.319256519934673 0.0 - - - - - - - 255.33333333333334 10 6 RFC4 replication factor C (activator 1) 4, 37kDa 1637 207 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A878.[MT7]-SDGK[MT7]PC[CAM]PPFK[MT7].3y3_1.heavy 522.289 / 535.336 17937.0 21.32485008239746 46 20 10 6 10 7.628102596795325 13.109419902402916 0.037899017333984375 3 0.9904044240337477 12.588644163166872 17937.0 7.066046645411593 0.0 - - - - - - - 328.0 35 4 RFC4 replication factor C (activator 1) 4, 37kDa 1639 207 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A878.[MT7]-SDGK[MT7]PC[CAM]PPFK[MT7].3y4_1.heavy 522.289 / 632.389 30842.0 21.32485008239746 46 20 10 6 10 7.628102596795325 13.109419902402916 0.037899017333984375 3 0.9904044240337477 12.588644163166872 30842.0 57.65444577073576 0.0 - - - - - - - 291.6666666666667 61 3 RFC4 replication factor C (activator 1) 4, 37kDa 1641 207 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A878.[MT7]-SDGK[MT7]PC[CAM]PPFK[MT7].3y5_1.heavy 522.289 / 792.419 3281.0 21.32485008239746 46 20 10 6 10 7.628102596795325 13.109419902402916 0.037899017333984375 3 0.9904044240337477 12.588644163166872 3281.0 3.5010670731707316 0.0 - - - - - - - 273.5 6 8 RFC4 replication factor C (activator 1) 4, 37kDa 1643 208 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A773.[MT7]-TYQGSYGFR.2y6_1.heavy 611.802 / 686.326 14794.0 24.73977518081665 38 18 10 2 8 9.06281169022801 11.034103258244365 0.08569908142089844 4 0.9872322733996791 10.910443827755644 14794.0 50.90408602150538 0.0 - - - - - - - 677.5714285714286 29 7 TP53 tumor protein p53 1645 208 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A773.[MT7]-TYQGSYGFR.2y8_1.heavy 611.802 / 977.448 23448.0 24.73977518081665 38 18 10 2 8 9.06281169022801 11.034103258244365 0.08569908142089844 4 0.9872322733996791 10.910443827755644 23448.0 53.22724014336917 1.0 - - - - - - - 662.625 48 8 TP53 tumor protein p53 1647 208 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A773.[MT7]-TYQGSYGFR.2b4_1.heavy 611.802 / 594.3 4187.0 24.73977518081665 38 18 10 2 8 9.06281169022801 11.034103258244365 0.08569908142089844 4 0.9872322733996791 10.910443827755644 4187.0 2.5217398909193838 10.0 - - - - - - - 697.5 12 8 TP53 tumor protein p53 1649 208 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A773.[MT7]-TYQGSYGFR.2y7_1.heavy 611.802 / 814.384 7816.0 24.73977518081665 38 18 10 2 8 9.06281169022801 11.034103258244365 0.08569908142089844 4 0.9872322733996791 10.910443827755644 7816.0 -0.33439510969392894 2.0 - - - - - - - 279.0 18 2 TP53 tumor protein p53 1651 209 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1199.[MT7]-VVFC[CAM]PVK[MT7].2y4_1.heavy 568.841 / 647.367 61333.0 28.375099182128906 50 20 10 10 10 28.730470314698287 3.4806252353217055 0.0 3 0.9947601831575279 17.041762117201724 61333.0 139.79694137931034 0.0 - - - - - - - 333.0 122 2 SAE1 SUMO1 activating enzyme subunit 1 1653 209 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1199.[MT7]-VVFC[CAM]PVK[MT7].2y5_1.heavy 568.841 / 794.435 44000.0 28.375099182128906 50 20 10 10 10 28.730470314698287 3.4806252353217055 0.0 3 0.9947601831575279 17.041762117201724 44000.0 85.50108868780967 0.0 - - - - - - - 333.0 88 2 SAE1 SUMO1 activating enzyme subunit 1 1655 209 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1199.[MT7]-VVFC[CAM]PVK[MT7].2b4_1.heavy 568.841 / 650.345 23000.0 28.375099182128906 50 20 10 10 10 28.730470314698287 3.4806252353217055 0.0 3 0.9947601831575279 17.041762117201724 23000.0 37.49396849212303 0.0 - - - - - - - 333.0 46 4 SAE1 SUMO1 activating enzyme subunit 1 1657 209 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1199.[MT7]-VVFC[CAM]PVK[MT7].2y6_1.heavy 568.841 / 893.503 42333.0 28.375099182128906 50 20 10 10 10 28.730470314698287 3.4806252353217055 0.0 3 0.9947601831575279 17.041762117201724 42333.0 167.76453486486486 0.0 - - - - - - - 333.0 84 4 SAE1 SUMO1 activating enzyme subunit 1 1659 210 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1198.[MT7]-TNNVNVSSR.2y8_1.heavy 567.803 / 889.449 12297.0 15.785799980163574 48 18 10 10 10 4.703276140457837 21.261775199587913 0.0 3 0.9899771766228975 12.31697116397325 12297.0 48.428546571605416 0.0 - - - - - - - 271.5 24 4 RNASEH2B ribonuclease H2, subunit B 1661 210 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1198.[MT7]-TNNVNVSSR.2y5_1.heavy 567.803 / 562.294 7776.0 15.785799980163574 48 18 10 10 10 4.703276140457837 21.261775199587913 0.0 3 0.9899771766228975 12.31697116397325 7776.0 13.18845560947759 0.0 - - - - - - - 783.4444444444445 15 9 RNASEH2B ribonuclease H2, subunit B 1663 210 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1198.[MT7]-TNNVNVSSR.2b4_1.heavy 567.803 / 573.311 7053.0 15.785799980163574 48 18 10 10 10 4.703276140457837 21.261775199587913 0.0 3 0.9899771766228975 12.31697116397325 7053.0 16.57303821553839 0.0 - - - - - - - 241.33333333333334 14 9 RNASEH2B ribonuclease H2, subunit B 1665 210 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1198.[MT7]-TNNVNVSSR.2b5_1.heavy 567.803 / 687.354 5063.0 15.785799980163574 48 18 10 10 10 4.703276140457837 21.261775199587913 0.0 3 0.9899771766228975 12.31697116397325 5063.0 36.364088397790056 0.0 - - - - - - - 271.5 10 4 RNASEH2B ribonuclease H2, subunit B 1667 211 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 ODP2_ECOLI.EAAPAAAPAAAAAK.2y7.peptide 590.82 / 599.35 425753.0 17.307100296020508 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 425753.0 1148.4024150006474 0.0 - - - - - - - 405.0 851 1 1669 211 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 ODP2_ECOLI.EAAPAAAPAAAAAK.2y9.peptide 590.82 / 741.43 301533.0 17.307100296020508 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 301533.0 822.7678654064454 0.0 - - - - - - - 253.5 603 4 1671 211 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 ODP2_ECOLI.EAAPAAAPAAAAAK.2y11.peptide 590.82 / 909.52 304978.0 17.307100296020508 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 304978.0 824.4180087204211 0.0 - - - - - - - 1187.0 609 7 1673 212 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A861.[MT7]-LNFGDDIPSALR.2y5_1.heavy 731.395 / 543.325 36263.0 35.9026985168457 46 16 10 10 10 3.1685582187145536 31.560095506330576 0.0 3 0.9684997051899774 6.935190345907319 36263.0 38.655344041122234 0.0 - - - - - - - 327.6 72 5 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 1675 212 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A861.[MT7]-LNFGDDIPSALR.2b6_1.heavy 731.395 / 806.38 52299.0 35.9026985168457 46 16 10 10 10 3.1685582187145536 31.560095506330576 0.0 3 0.9684997051899774 6.935190345907319 52299.0 75.55485539758655 0.0 - - - - - - - 260.0 104 7 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 1677 212 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A861.[MT7]-LNFGDDIPSALR.2y6_1.heavy 731.395 / 656.409 69793.0 35.9026985168457 46 16 10 10 10 3.1685582187145536 31.560095506330576 0.0 3 0.9684997051899774 6.935190345907319 69793.0 154.83639445757345 0.0 - - - - - - - 769.4444444444445 139 9 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 1679 212 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A861.[MT7]-LNFGDDIPSALR.2y11_1.heavy 731.395 / 1204.6 46286.0 35.9026985168457 46 16 10 10 10 3.1685582187145536 31.560095506330576 0.0 3 0.9684997051899774 6.935190345907319 46286.0 139.84426025194318 0.0 - - - - - - - 260.0 92 7 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 1681 213 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9982.[MT7]-VVLLTEVDK[MT7].2y8_1.heavy 652.407 / 1060.64 20993.0 32.39590072631836 50 20 10 10 10 11.051622150197193 9.048445435516062 0.0 3 0.9953778780998184 18.145721879677204 20993.0 52.482499999999995 0.0 - - - - - - - 280.0 41 7 RFC3 replication factor C (activator 1) 3, 38kDa 1683 213 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9982.[MT7]-VVLLTEVDK[MT7].2y5_1.heavy 652.407 / 735.401 45344.0 32.39590072631836 50 20 10 10 10 11.051622150197193 9.048445435516062 0.0 3 0.9953778780998184 18.145721879677204 45344.0 55.87842263765711 0.0 - - - - - - - 280.0 90 4 RFC3 replication factor C (activator 1) 3, 38kDa 1685 213 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9982.[MT7]-VVLLTEVDK[MT7].2y6_1.heavy 652.407 / 848.485 31909.0 32.39590072631836 50 20 10 10 10 11.051622150197193 9.048445435516062 0.0 3 0.9953778780998184 18.145721879677204 31909.0 71.22544642857143 0.0 - - - - - - - 280.0 63 6 RFC3 replication factor C (activator 1) 3, 38kDa 1687 213 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9982.[MT7]-VVLLTEVDK[MT7].2y7_1.heavy 652.407 / 961.569 23792.0 32.39590072631836 50 20 10 10 10 11.051622150197193 9.048445435516062 0.0 3 0.9953778780998184 18.145721879677204 23792.0 117.26057142857144 0.0 - - - - - - - 280.0 47 5 RFC3 replication factor C (activator 1) 3, 38kDa 1689 214 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A863.[MT7]-ITNTDVDC[CAM]LK[MT7].2y5_1.heavy 733.892 / 778.425 16044.0 25.772199630737305 46 16 10 10 10 2.43991583931404 32.66676143996011 0.0 3 0.9645147571062438 6.531994152807745 16044.0 57.117816455548336 0.0 - - - - - - - 303.0 32 2 CCND2 cyclin D2 1691 214 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A863.[MT7]-ITNTDVDC[CAM]LK[MT7].2y9_1.heavy 733.892 / 1209.59 39958.0 25.772199630737305 46 16 10 10 10 2.43991583931404 32.66676143996011 0.0 3 0.9645147571062438 6.531994152807745 39958.0 65.2070964973027 0.0 - - - - - - - 303.0 79 7 CCND2 cyclin D2 1693 214 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A863.[MT7]-ITNTDVDC[CAM]LK[MT7].2y3_1.heavy 733.892 / 564.33 34207.0 25.772199630737305 46 16 10 10 10 2.43991583931404 32.66676143996011 0.0 3 0.9645147571062438 6.531994152807745 34207.0 127.02545973815442 0.0 - - - - - - - 303.0 68 3 CCND2 cyclin D2 1695 214 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A863.[MT7]-ITNTDVDC[CAM]LK[MT7].2b5_1.heavy 733.892 / 689.359 29969.0 25.772199630737305 46 16 10 10 10 2.43991583931404 32.66676143996011 0.0 3 0.9645147571062438 6.531994152807745 29969.0 41.96827733338279 0.0 - - - - - - - 756.5 59 8 CCND2 cyclin D2 1697 215 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A866.[MT7]-VLQNLLTIEER.3y6_1.heavy 491.292 / 760.42 1915.0 38.94369983673096 39 16 10 3 10 2.6281401643513305 38.04972099906311 0.06399917602539062 3 0.9659843592833082 6.672433049933264 1915.0 6.26984788816025 1.0 - - - - - - - 213.0 3 3 CCND2 cyclin D2 1699 215 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A866.[MT7]-VLQNLLTIEER.3b4_1.heavy 491.292 / 599.363 3670.0 38.94369983673096 39 16 10 3 10 2.6281401643513305 38.04972099906311 0.06399917602539062 3 0.9659843592833082 6.672433049933264 3670.0 22.9145625 0.0 - - - - - - - 186.5 7 6 CCND2 cyclin D2 1701 215 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A866.[MT7]-VLQNLLTIEER.3b5_1.heavy 491.292 / 712.447 798.0 38.94369983673096 39 16 10 3 10 2.6281401643513305 38.04972099906311 0.06399917602539062 3 0.9659843592833082 6.672433049933264 798.0 9.625874999999999 0.0 - - - - - - - 0.0 1 0 CCND2 cyclin D2 1703 215 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A866.[MT7]-VLQNLLTIEER.3y4_1.heavy 491.292 / 546.288 1755.0 38.94369983673096 39 16 10 3 10 2.6281401643513305 38.04972099906311 0.06399917602539062 3 0.9659843592833082 6.672433049933264 1755.0 15.48278605015674 0.0 - - - - - - - 213.11111111111111 3 9 CCND2 cyclin D2 1705 216 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A865.[MT7]-TVYEGFISAQGR.2y8_1.heavy 736.387 / 835.442 56342.0 30.658550262451172 43 20 10 3 10 9.188256448700821 10.88345765688109 0.050899505615234375 3 0.9935094407915166 15.310385663280156 56342.0 34.04569149152881 0.0 - - - - - - - 315.0 112 1 FANCL Fanconi anemia, complementation group L 1707 216 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A865.[MT7]-TVYEGFISAQGR.2y9_1.heavy 736.387 / 964.485 29273.0 30.658550262451172 43 20 10 3 10 9.188256448700821 10.88345765688109 0.050899505615234375 3 0.9935094407915166 15.310385663280156 29273.0 100.16513077729032 0.0 - - - - - - - 315.0 58 7 FANCL Fanconi anemia, complementation group L 1709 216 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A865.[MT7]-TVYEGFISAQGR.2y10_1.heavy 736.387 / 1127.55 44066.0 30.658550262451172 43 20 10 3 10 9.188256448700821 10.88345765688109 0.050899505615234375 3 0.9935094407915166 15.310385663280156 44066.0 71.0355820752482 0.0 - - - - - - - 315.0 88 4 FANCL Fanconi anemia, complementation group L 1711 216 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A865.[MT7]-TVYEGFISAQGR.2y11_1.heavy 736.387 / 1226.62 23292.0 30.658550262451172 43 20 10 3 10 9.188256448700821 10.88345765688109 0.050899505615234375 3 0.9935094407915166 15.310385663280156 23292.0 92.69959079903147 0.0 - - - - - - - 315.0 46 1 FANCL Fanconi anemia, complementation group L 1713 217 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A765.[MT7]-NLLSVAYK[MT7].2y4_1.heavy 598.368 / 624.384 35905.0 30.988100051879883 47 17 10 10 10 3.1133035522769017 26.216563480789347 0.0 3 0.9768735997079204 8.09967898383312 35905.0 27.19620869560511 0.0 - - - - - - - 310.0 71 4 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1715 217 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A765.[MT7]-NLLSVAYK[MT7].2y5_1.heavy 598.368 / 711.416 116691.0 30.988100051879883 47 17 10 10 10 3.1133035522769017 26.216563480789347 0.0 3 0.9768735997079204 8.09967898383312 116691.0 157.2818648467701 0.0 - - - - - - - 774.0 233 4 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1717 217 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A765.[MT7]-NLLSVAYK[MT7].2y3_1.heavy 598.368 / 525.315 91000.0 30.988100051879883 47 17 10 10 10 3.1133035522769017 26.216563480789347 0.0 3 0.9768735997079204 8.09967898383312 91000.0 182.19590958019376 0.0 - - - - - - - 310.0 182 2 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1719 217 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A765.[MT7]-NLLSVAYK[MT7].2y6_1.heavy 598.368 / 824.5 57881.0 30.988100051879883 47 17 10 10 10 3.1133035522769017 26.216563480789347 0.0 3 0.9768735997079204 8.09967898383312 57881.0 64.8317070543888 0.0 - - - - - - - 310.0 115 1 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 1721 218 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A868.[MT7]-AAELFVETIAK[MT7].2b4_1.heavy 740.437 / 529.31 78651.0 36.902400970458984 50 20 10 10 10 9.677060505850704 10.333716518517218 0.0 3 0.997600445976697 25.188959188377535 78651.0 101.96474424651345 0.0 - - - - - - - 265.44444444444446 157 9 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 1723 218 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A868.[MT7]-AAELFVETIAK[MT7].2b6_1.heavy 740.437 / 775.447 26615.0 36.902400970458984 50 20 10 10 10 9.677060505850704 10.333716518517218 0.0 3 0.997600445976697 25.188959188377535 26615.0 49.551650500037596 0.0 - - - - - - - 633.7142857142857 53 7 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 1725 218 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A868.[MT7]-AAELFVETIAK[MT7].2b5_1.heavy 740.437 / 676.379 48965.0 36.902400970458984 50 20 10 10 10 9.677060505850704 10.333716518517218 0.0 3 0.997600445976697 25.188959188377535 48965.0 108.0878450732899 0.0 - - - - - - - 256.0 97 8 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 1727 218 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A868.[MT7]-AAELFVETIAK[MT7].2y7_1.heavy 740.437 / 951.563 45894.0 36.902400970458984 50 20 10 10 10 9.677060505850704 10.333716518517218 0.0 3 0.997600445976697 25.188959188377535 45894.0 62.603013838775176 0.0 - - - - - - - 665.2 91 10 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 1729 219 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A764.[MT7]-EEESAGGTK[MT7].2b3_1.heavy 598.306 / 532.237 4182.0 13.564150094985962 35 8 10 7 10 1.6300865767244763 41.774851120362854 0.02460002899169922 3 0.7796482087362133 2.5792059312645117 4182.0 11.091783735770552 0.0 - - - - - - - 244.7 8 20 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1731 219 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A764.[MT7]-EEESAGGTK[MT7].2y4_1.heavy 598.306 / 506.306 1792.0 13.564150094985962 35 8 10 7 10 1.6300865767244763 41.774851120362854 0.02460002899169922 3 0.7796482087362133 2.5792059312645117 1792.0 -0.13632559908710531 2.0 - - - - - - - 197.0 5 20 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1733 219 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A764.[MT7]-EEESAGGTK[MT7].2y6_1.heavy 598.306 / 664.375 3824.0 13.564150094985962 35 8 10 7 10 1.6300865767244763 41.774851120362854 0.02460002899169922 3 0.7796482087362133 2.5792059312645117 3824.0 14.4 0.0 - - - - - - - 208.8125 7 16 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1735 219 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A764.[MT7]-EEESAGGTK[MT7].2y7_1.heavy 598.306 / 793.417 2748.0 13.564150094985962 35 8 10 7 10 1.6300865767244763 41.774851120362854 0.02460002899169922 3 0.7796482087362133 2.5792059312645117 2748.0 -0.8 1.0 - - - - - - - 225.38888888888889 5 18 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 1737 220 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A867.[MT7]-SQLQITVISAK[MT7].2y4_1.heavy 738.455 / 562.368 7526.0 29.815099716186523 48 18 10 10 10 5.100377025335921 19.606393704475956 0.0 3 0.9892394570590698 11.886529422631734 7526.0 12.658409785932722 0.0 - - - - - - - 736.0 15 8 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 1739 220 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A867.[MT7]-SQLQITVISAK[MT7].2b4_1.heavy 738.455 / 601.343 11126.0 29.815099716186523 48 18 10 10 10 5.100377025335921 19.606393704475956 0.0 3 0.9892394570590698 11.886529422631734 11126.0 22.248173287573927 0.0 - - - - - - - 327.0 22 1 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 1741 220 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A867.[MT7]-SQLQITVISAK[MT7].2y6_1.heavy 738.455 / 762.484 9817.0 29.815099716186523 48 18 10 10 10 5.100377025335921 19.606393704475956 0.0 3 0.9892394570590698 11.886529422631734 9817.0 20.807708601929534 0.0 - - - - - - - 841.4285714285714 19 7 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 1743 220 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A867.[MT7]-SQLQITVISAK[MT7].2y7_1.heavy 738.455 / 875.568 6872.0 29.815099716186523 48 18 10 10 10 5.100377025335921 19.606393704475956 0.0 3 0.9892394570590698 11.886529422631734 6872.0 7.155351681957186 1.0 - - - - - - - 327.0 13 4 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 1745 221 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A767.[MT7]-YATEEALK[MT7].2y4_1.heavy 606.839 / 604.379 58506.0 23.1299991607666 50 20 10 10 10 4.4187330548876425 17.914473770349968 0.0 3 0.9928472092607513 14.583622087180308 58506.0 169.79789932740843 0.0 - - - - - - - 353.45454545454544 117 11 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 1747 221 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A767.[MT7]-YATEEALK[MT7].2y6_1.heavy 606.839 / 834.469 76956.0 23.1299991607666 50 20 10 10 10 4.4187330548876425 17.914473770349968 0.0 3 0.9928472092607513 14.583622087180308 76956.0 215.70509618776285 0.0 - - - - - - - 788.75 153 8 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 1749 221 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A767.[MT7]-YATEEALK[MT7].2b5_1.heavy 606.839 / 738.343 48310.0 23.1299991607666 50 20 10 10 10 4.4187330548876425 17.914473770349968 0.0 3 0.9928472092607513 14.583622087180308 48310.0 195.65581114704307 0.0 - - - - - - - 340.2 96 10 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 1751 221 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A767.[MT7]-YATEEALK[MT7].2y7_1.heavy 606.839 / 905.506 107059.0 23.1299991607666 50 20 10 10 10 4.4187330548876425 17.914473770349968 0.0 3 0.9928472092607513 14.583622087180308 107059.0 279.80858790117804 0.0 - - - - - - - 329.7857142857143 214 14 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 1753 222 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A766.[MT7]-MQLYVEER.2b3_1.heavy 606.314 / 517.292 21333.0 28.274799346923828 50 20 10 10 10 27.20498046034161 3.675797530741704 0.0 3 0.9968748689634356 22.070648116257967 21333.0 20.160694042736836 0.0 - - - - - - - 333.0 42 3 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 1755 222 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A766.[MT7]-MQLYVEER.2b4_1.heavy 606.314 / 680.356 13333.0 28.274799346923828 50 20 10 10 10 27.20498046034161 3.675797530741704 0.0 3 0.9968748689634356 22.070648116257967 13333.0 14.2823575928009 0.0 - - - - - - - 333.0 26 2 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 1757 222 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A766.[MT7]-MQLYVEER.2y6_1.heavy 606.314 / 808.42 19667.0 28.274799346923828 50 20 10 10 10 27.20498046034161 3.675797530741704 0.0 3 0.9968748689634356 22.070648116257967 19667.0 38.129993336581705 0.0 - - - - - - - 333.0 39 3 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 1759 222 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A766.[MT7]-MQLYVEER.2y7_1.heavy 606.314 / 936.479 30333.0 28.274799346923828 50 20 10 10 10 27.20498046034161 3.675797530741704 0.0 3 0.9968748689634356 22.070648116257967 30333.0 127.0030750840796 0.0 - - - - - - - 333.0 60 3 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 1761 223 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A869.[MT7]-FNILILYSTTR.2b3_1.heavy 742.933 / 519.305 11028.0 41.916500091552734 44 14 10 10 10 2.2664426881650908 29.6465956331406 0.0 3 0.9471994758687389 5.347041643860003 11028.0 8.820384779820436 0.0 - - - - - - - 244.07692307692307 22 13 FBXO4 F-box protein 4 1763 223 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A869.[MT7]-FNILILYSTTR.2y8_1.heavy 742.933 / 966.562 10192.0 41.916500091552734 44 14 10 10 10 2.2664426881650908 29.6465956331406 0.0 3 0.9471994758687389 5.347041643860003 10192.0 47.80678642714571 0.0 - - - - - - - 200.4 20 10 FBXO4 F-box protein 4 1765 223 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A869.[MT7]-FNILILYSTTR.2y10_1.heavy 742.933 / 1193.69 5180.0 41.916500091552734 44 14 10 10 10 2.2664426881650908 29.6465956331406 0.0 3 0.9471994758687389 5.347041643860003 5180.0 50.869461077844306 0.0 - - - - - - - 187.875 10 8 FBXO4 F-box protein 4 1767 223 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A869.[MT7]-FNILILYSTTR.2y7_1.heavy 742.933 / 853.478 10526.0 41.916500091552734 44 14 10 10 10 2.2664426881650908 29.6465956331406 0.0 3 0.9471994758687389 5.347041643860003 10526.0 35.19171656686626 0.0 - - - - - - - 605.375 21 8 FBXO4 F-box protein 4 1769 224 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A761.[MT7]-GPILSFASTR.2b4_1.heavy 596.844 / 525.352 6916.0 32.566200256347656 43 18 10 5 10 6.751693344372493 14.811099216072892 0.048797607421875 3 0.98797242673167 11.241832463695347 6916.0 6.06238961038961 1.0 - - - - - - - 266.0 14 1 RFC5 replication factor C (activator 1) 5, 36.5kDa 1771 224 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A761.[MT7]-GPILSFASTR.2y9_1.heavy 596.844 / 991.557 12237.0 32.566200256347656 43 18 10 5 10 6.751693344372493 14.811099216072892 0.048797607421875 3 0.98797242673167 11.241832463695347 12237.0 67.85554511278195 0.0 - - - - - - - 266.0 24 2 RFC5 replication factor C (activator 1) 5, 36.5kDa 1773 224 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A761.[MT7]-GPILSFASTR.2y6_1.heavy 596.844 / 668.336 9577.0 32.566200256347656 43 18 10 5 10 6.751693344372493 14.811099216072892 0.048797607421875 3 0.98797242673167 11.241832463695347 9577.0 5.978781250883216 1.0 - - - - - - - 266.0 19 4 RFC5 replication factor C (activator 1) 5, 36.5kDa 1775 224 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A761.[MT7]-GPILSFASTR.2y7_1.heavy 596.844 / 781.42 9577.0 32.566200256347656 43 18 10 5 10 6.751693344372493 14.811099216072892 0.048797607421875 3 0.98797242673167 11.241832463695347 9577.0 13.861447368421054 0.0 - - - - - - - 266.0 19 1 RFC5 replication factor C (activator 1) 5, 36.5kDa 1777 225 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9921.[MT7]-FYGAEIVSALDYLHSGK[MT7].4y4_1.heavy 540.291 / 572.327 N/A N/A - - - - - - - - - 0.0 - - - - - - - AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1779 225 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9921.[MT7]-FYGAEIVSALDYLHSGK[MT7].4b4_1.heavy 540.291 / 583.3 N/A N/A - - - - - - - - - 0.0 - - - - - - - AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1781 225 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9921.[MT7]-FYGAEIVSALDYLHSGK[MT7].4b5_1.heavy 540.291 / 712.342 N/A N/A - - - - - - - - - 0.0 - - - - - - - AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1783 225 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9921.[MT7]-FYGAEIVSALDYLHSGK[MT7].4b3_1.heavy 540.291 / 512.263 N/A N/A - - - - - - - - - 0.0 - - - - - - - AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1785 226 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A994.[MT7]-C[CAM]YDIIPETLLELGEIPTLK[MT7].3y7_1.heavy 835.797 / 901.547 30281.0 48.760398864746094 43 13 10 10 10 1.65561272562243 53.388207406584286 0.0 3 0.9127830097039322 4.14814198438656 30281.0 205.51067105689302 0.0 - - - - - - - 281.0 60 7 SKP2 S-phase kinase-associated protein 2 (p45) 1787 226 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A994.[MT7]-C[CAM]YDIIPETLLELGEIPTLK[MT7].3b4_1.heavy 835.797 / 696.314 45854.0 48.760398864746094 43 13 10 10 10 1.65561272562243 53.388207406584286 0.0 3 0.9127830097039322 4.14814198438656 45854.0 133.19032627118642 0.0 - - - - - - - 296.38461538461536 91 13 SKP2 S-phase kinase-associated protein 2 (p45) 1789 226 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A994.[MT7]-C[CAM]YDIIPETLLELGEIPTLK[MT7].3b5_1.heavy 835.797 / 809.398 101775.0 48.760398864746094 43 13 10 10 10 1.65561272562243 53.388207406584286 0.0 3 0.9127830097039322 4.14814198438656 101775.0 211.70218217644765 0.0 - - - - - - - 275.5 203 6 SKP2 S-phase kinase-associated protein 2 (p45) 1791 226 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A994.[MT7]-C[CAM]YDIIPETLLELGEIPTLK[MT7].3b3_1.heavy 835.797 / 583.23 30753.0 48.760398864746094 43 13 10 10 10 1.65561272562243 53.388207406584286 0.0 3 0.9127830097039322 4.14814198438656 30753.0 98.7509233105227 0.0 - - - - - - - 288.4166666666667 61 12 SKP2 S-phase kinase-associated protein 2 (p45) 1793 227 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A992.[MT7]-WNFDFVTETPLEGDFAWER.3b4_1.heavy 835.061 / 707.327 21217.0 45.72169876098633 44 14 10 10 10 3.3393751914985157 29.945721659124462 0.0 3 0.9492338130577859 5.454066949125104 21217.0 73.3117097928179 0.0 - - - - - - - 257.72727272727275 42 11 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 1795 227 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A992.[MT7]-WNFDFVTETPLEGDFAWER.3b5_1.heavy 835.061 / 854.395 15136.0 45.72169876098633 44 14 10 10 10 3.3393751914985157 29.945721659124462 0.0 3 0.9492338130577859 5.454066949125104 15136.0 64.6971517765455 0.0 - - - - - - - 310.5 30 10 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 1797 227 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A992.[MT7]-WNFDFVTETPLEGDFAWER.3y8_1.heavy 835.061 / 1009.44 8514.0 45.72169876098633 44 14 10 10 10 3.3393751914985157 29.945721659124462 0.0 3 0.9492338130577859 5.454066949125104 8514.0 72.00422090729784 0.0 - - - - - - - 250.71428571428572 17 7 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 1799 227 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A992.[MT7]-WNFDFVTETPLEGDFAWER.3y10_1.heavy 835.061 / 1219.57 12568.0 45.72169876098633 44 14 10 10 10 3.3393751914985157 29.945721659124462 0.0 3 0.9492338130577859 5.454066949125104 12568.0 50.39107665805341 0.0 - - - - - - - 245.45454545454547 25 11 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 1801 228 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A991.[MT7]-IC[CAM]SSPVQSLLDLFQTSEEK[MT7].4y5_1.heavy 618.075 / 737.38 N/A N/A - - - - - - - - - 0.0 - - - - - - - DBF4 DBF4 homolog (S. cerevisiae) 1803 228 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A991.[MT7]-IC[CAM]SSPVQSLLDLFQTSEEK[MT7].4y4_1.heavy 618.075 / 636.332 N/A N/A - - - - - - - - - 0.0 - - - - - - - DBF4 DBF4 homolog (S. cerevisiae) 1805 228 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A991.[MT7]-IC[CAM]SSPVQSLLDLFQTSEEK[MT7].4b4_1.heavy 618.075 / 592.288 N/A N/A - - - - - - - - - 0.0 - - - - - - - DBF4 DBF4 homolog (S. cerevisiae) 1807 228 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A991.[MT7]-IC[CAM]SSPVQSLLDLFQTSEEK[MT7].4b6_1.heavy 618.075 / 788.409 N/A N/A - - - - - - - - - 0.0 - - - - - - - DBF4 DBF4 homolog (S. cerevisiae) 1809 229 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A998.[MT7]-ILLSVVSMLAEPNDESGANVDASK[MT7].3b6_1.heavy 916.484 / 769.53 15935.0 45.894798278808594 43 13 10 10 10 9.008963639717557 11.10005589978551 0.0 3 0.9210394301476915 4.362719210786556 15935.0 30.563354484778642 0.0 - - - - - - - 707.0 31 10 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 1811 229 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A998.[MT7]-ILLSVVSMLAEPNDESGANVDASK[MT7].3b4_1.heavy 916.484 / 571.394 8096.0 45.894798278808594 43 13 10 10 10 9.008963639717557 11.10005589978551 0.0 3 0.9210394301476915 4.362719210786556 8096.0 19.38639530212054 0.0 - - - - - - - 642.7 16 10 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 1813 229 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A998.[MT7]-ILLSVVSMLAEPNDESGANVDASK[MT7].3y4_1.heavy 916.484 / 564.311 16192.0 45.894798278808594 43 13 10 10 10 9.008963639717557 11.10005589978551 0.0 3 0.9210394301476915 4.362719210786556 16192.0 33.3528598357112 0.0 - - - - - - - 728.4444444444445 32 9 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 1815 229 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A998.[MT7]-ILLSVVSMLAEPNDESGANVDASK[MT7].3y9_1.heavy 916.484 / 992.513 8867.0 45.894798278808594 43 13 10 10 10 9.008963639717557 11.10005589978551 0.0 3 0.9210394301476915 4.362719210786556 8867.0 21.61517375386533 0.0 - - - - - - - 257.3636363636364 17 11 UBE2G2 ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 1817 230 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A996.[MT7]-TSSC[CAM]PVIFILDEFDLFAHHK[MT7].4b7_1.heavy 666.849 / 889.457 12967.0 49.22582530975342 44 20 10 6 8 5.174399798821499 19.325912934438428 0.038097381591796875 4 0.9906298637421043 12.739421762778397 12967.0 76.5053 0.0 - - - - - - - 196.15384615384616 25 13 ORC4 origin recognition complex, subunit 4 1819 230 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A996.[MT7]-TSSC[CAM]PVIFILDEFDLFAHHK[MT7].4b4_1.heavy 666.849 / 580.252 27882.0 49.22582530975342 44 20 10 6 8 5.174399798821499 19.325912934438428 0.038097381591796875 4 0.9906298637421043 12.739421762778397 27882.0 37.176 1.0 - - - - - - - 178.125 59 8 ORC4 origin recognition complex, subunit 4 1821 230 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A996.[MT7]-TSSC[CAM]PVIFILDEFDLFAHHK[MT7].4y3_1.heavy 666.849 / 565.333 10568.0 49.22582530975342 44 20 10 6 8 5.174399798821499 19.325912934438428 0.038097381591796875 4 0.9906298637421043 12.739421762778397 10568.0 78.20320000000001 0.0 - - - - - - - 196.15384615384616 21 13 ORC4 origin recognition complex, subunit 4 1823 230 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A996.[MT7]-TSSC[CAM]PVIFILDEFDLFAHHK[MT7].4b6_1.heavy 666.849 / 776.373 25034.0 49.22582530975342 44 20 10 6 8 5.174399798821499 19.325912934438428 0.038097381591796875 4 0.9906298637421043 12.739421762778397 25034.0 219.18657777777779 0.0 - - - - - - - 168.75 50 12 ORC4 origin recognition complex, subunit 4 1825 231 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A995.[MT7]-EAEDVIWEDSASENQEGLRK[MT7].4y12_2.heavy 649.071 / 739.372 17000.0 28.939699172973633 41 11 10 10 10 1.0791123129677156 68.49468452167098 0.0 3 0.8707530144390795 3.39515490303474 17000.0 21.590728675525074 0.0 - - - - - - - 333.0 34 5 RNASEH2A ribonuclease H2, subunit A 1827 231 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A995.[MT7]-EAEDVIWEDSASENQEGLRK[MT7].4b4_1.heavy 649.071 / 589.259 24333.0 28.939699172973633 41 11 10 10 10 1.0791123129677156 68.49468452167098 0.0 3 0.8707530144390795 3.39515490303474 24333.0 45.50384259220583 0.0 - - - - - - - 333.0 48 2 RNASEH2A ribonuclease H2, subunit A 1829 231 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A995.[MT7]-EAEDVIWEDSASENQEGLRK[MT7].4b5_1.heavy 649.071 / 688.327 29333.0 28.939699172973633 41 11 10 10 10 1.0791123129677156 68.49468452167098 0.0 3 0.8707530144390795 3.39515490303474 29333.0 21.97095668588588 0.0 - - - - - - - 333.0 58 2 RNASEH2A ribonuclease H2, subunit A 1831 231 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A995.[MT7]-EAEDVIWEDSASENQEGLRK[MT7].4b6_1.heavy 649.071 / 801.411 11667.0 28.939699172973633 41 11 10 10 10 1.0791123129677156 68.49468452167098 0.0 3 0.8707530144390795 3.39515490303474 11667.0 3.077549901319649 1.0 - - - - - - - 333.0 32 4 RNASEH2A ribonuclease H2, subunit A 1833 232 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A796.[MT7]-RLTWEATPR.3b4_1.heavy 425.243 / 701.422 13699.0 24.464000701904297 48 18 10 10 10 4.7737492014413725 20.947895622544703 0.0 3 0.9842313535776466 9.815056836080524 13699.0 93.70319702602231 0.0 - - - - - - - 269.0 27 4 SIAH1;SIAH2 seven in absentia homolog 1 (Drosophila);seven in absentia homolog 2 (Drosophila) 1835 232 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A796.[MT7]-RLTWEATPR.3b3_1.heavy 425.243 / 515.342 17729.0 24.464000701904297 48 18 10 10 10 4.7737492014413725 20.947895622544703 0.0 3 0.9842313535776466 9.815056836080524 17729.0 100.17873605947955 0.0 - - - - - - - 269.0 35 8 SIAH1;SIAH2 seven in absentia homolog 1 (Drosophila);seven in absentia homolog 2 (Drosophila) 1837 232 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A796.[MT7]-RLTWEATPR.3y4_1.heavy 425.243 / 444.257 71452.0 24.464000701904297 48 18 10 10 10 4.7737492014413725 20.947895622544703 0.0 3 0.9842313535776466 9.815056836080524 71452.0 126.76967741935482 0.0 - - - - - - - 269.0 142 4 SIAH1;SIAH2 seven in absentia homolog 1 (Drosophila);seven in absentia homolog 2 (Drosophila) 1839 232 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A796.[MT7]-RLTWEATPR.3y5_1.heavy 425.243 / 573.299 52649.0 24.464000701904297 48 18 10 10 10 4.7737492014413725 20.947895622544703 0.0 3 0.9842313535776466 9.815056836080524 52649.0 137.1619199255121 0.0 - - - - - - - 269.0 105 7 SIAH1;SIAH2 seven in absentia homolog 1 (Drosophila);seven in absentia homolog 2 (Drosophila) 1841 233 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A793.[MT7]-LIADVAPSAIR.2b4_1.heavy 635.386 / 557.341 58073.0 31.43280029296875 47 17 10 10 10 3.425727848828933 23.366942057674386 0.0 3 0.9759996126701269 7.950250156858446 58073.0 120.10095764149045 0.0 - - - - - - - 295.0 116 1 FEN1 flap structure-specific endonuclease 1 1843 233 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A793.[MT7]-LIADVAPSAIR.2y9_1.heavy 635.386 / 899.495 52767.0 31.43280029296875 47 17 10 10 10 3.425727848828933 23.366942057674386 0.0 3 0.9759996126701269 7.950250156858446 52767.0 56.76144741409233 0.0 - - - - - - - 295.0 105 1 FEN1 flap structure-specific endonuclease 1 1845 233 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A793.[MT7]-LIADVAPSAIR.2y10_1.heavy 635.386 / 1012.58 48051.0 31.43280029296875 47 17 10 10 10 3.425727848828933 23.366942057674386 0.0 3 0.9759996126701269 7.950250156858446 48051.0 101.00235396805625 0.0 - - - - - - - 716.0 96 7 FEN1 flap structure-specific endonuclease 1 1847 233 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A793.[MT7]-LIADVAPSAIR.2y7_1.heavy 635.386 / 713.43 47166.0 31.43280029296875 47 17 10 10 10 3.425727848828933 23.366942057674386 0.0 3 0.9759996126701269 7.950250156858446 47166.0 45.118086838534595 0.0 - - - - - - - 632.0 94 7 FEN1 flap structure-specific endonuclease 1 1849 234 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9931.[MT7]-TFHVDTPEEREEWTEAIQAVADR.4y5_1.heavy 719.101 / 531.289 32698.0 35.51620101928711 45 17 10 10 8 3.5348654443514977 28.28961995138853 0.0 4 0.9777947713832338 8.266617052249767 32698.0 45.208976715246024 0.0 - - - - - - - 709.0 65 9 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1851 234 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9931.[MT7]-TFHVDTPEEREEWTEAIQAVADR.4b5_1.heavy 719.101 / 744.38 6579.0 35.51620101928711 45 17 10 10 8 3.5348654443514977 28.28961995138853 0.0 4 0.9777947713832338 8.266617052249767 6579.0 17.932725752508357 0.0 - - - - - - - 697.875 13 8 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1853 234 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9931.[MT7]-TFHVDTPEEREEWTEAIQAVADR.4y6_1.heavy 719.101 / 659.347 30903.0 35.51620101928711 45 17 10 10 8 3.5348654443514977 28.28961995138853 0.0 4 0.9777947713832338 8.266617052249767 30903.0 71.64229323308271 0.0 - - - - - - - 709.0 61 9 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1855 234 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9931.[MT7]-TFHVDTPEEREEWTEAIQAVADR.4b3_1.heavy 719.101 / 530.284 8174.0 35.51620101928711 45 17 10 10 8 3.5348654443514977 28.28961995138853 0.0 4 0.9777947713832338 8.266617052249767 8174.0 10.251672240802677 1.0 - - - - - - - 289.90909090909093 19 11 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 1857 235 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A980.[MT7]-ESFDC[CAM]LFELLEHYVAAPR.3y6_1.heavy 780.72 / 676.378 33701.0 49.21630096435547 44 14 10 10 10 2.3128610055999483 30.013204956988144 0.0 3 0.9469713925788491 5.335426651008212 33701.0 158.59605684361404 0.0 - - - - - - - 263.9375 67 16 SOCS1 suppressor of cytokine signaling 1 1859 235 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A980.[MT7]-ESFDC[CAM]LFELLEHYVAAPR.3b6_1.heavy 780.72 / 896.394 26786.0 49.21630096435547 44 14 10 10 10 2.3128610055999483 30.013204956988144 0.0 3 0.9469713925788491 5.335426651008212 26786.0 220.2848531394 0.0 - - - - - - - 171.41176470588235 53 17 SOCS1 suppressor of cytokine signaling 1 1861 235 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A980.[MT7]-ESFDC[CAM]LFELLEHYVAAPR.3b4_1.heavy 780.72 / 623.279 21618.0 49.21630096435547 44 14 10 10 10 2.3128610055999483 30.013204956988144 0.0 3 0.9469713925788491 5.335426651008212 21618.0 115.97417330376047 0.0 - - - - - - - 200.16666666666666 43 12 SOCS1 suppressor of cytokine signaling 1 1863 235 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A980.[MT7]-ESFDC[CAM]LFELLEHYVAAPR.3y8_1.heavy 780.72 / 942.479 24530.0 49.21630096435547 44 14 10 10 10 2.3128610055999483 30.013204956988144 0.0 3 0.9469713925788491 5.335426651008212 24530.0 140.60213250227605 0.0 - - - - - - - 218.57142857142858 49 14 SOCS1 suppressor of cytokine signaling 1 1865 236 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A783.[MT7]-YFLWVVK[MT7].2y4_1.heavy 621.878 / 675.431 83625.0 41.42995071411133 44 18 10 6 10 3.8105885629978236 26.242665233144223 0.036102294921875 3 0.9832606748319991 9.525454627295453 83625.0 261.9509340372454 0.0 - - - - - - - 212.14285714285714 167 7 GRB2 growth factor receptor-bound protein 2 1867 236 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A783.[MT7]-YFLWVVK[MT7].2b3_1.heavy 621.878 / 568.325 75378.0 41.42995071411133 44 18 10 6 10 3.8105885629978236 26.242665233144223 0.036102294921875 3 0.9832606748319991 9.525454627295453 75378.0 68.25734092291793 0.0 - - - - - - - 330.0 150 9 GRB2 growth factor receptor-bound protein 2 1869 236 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A783.[MT7]-YFLWVVK[MT7].2y5_1.heavy 621.878 / 788.515 36947.0 41.42995071411133 44 18 10 6 10 3.8105885629978236 26.242665233144223 0.036102294921875 3 0.9832606748319991 9.525454627295453 36947.0 277.662303030303 0.0 - - - - - - - 330.0 73 12 GRB2 growth factor receptor-bound protein 2 1871 236 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A783.[MT7]-YFLWVVK[MT7].2y6_1.heavy 621.878 / 935.583 35462.0 41.42995071411133 44 18 10 6 10 3.8105885629978236 26.242665233144223 0.036102294921875 3 0.9832606748319991 9.525454627295453 35462.0 246.72955151515148 0.0 - - - - - - - 256.6666666666667 70 9 GRB2 growth factor receptor-bound protein 2 1873 237 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A786.[MT7]-ELFGPELFR.2y8_1.heavy 626.346 / 978.541 59434.0 38.88770008087158 46 20 10 6 10 21.73041051928988 4.601845874528276 0.032001495361328125 3 0.9994012622762569 50.43388076740338 59434.0 87.54112764473379 0.0 - - - - - - - 319.75 118 4 RFC4 replication factor C (activator 1) 4, 37kDa 1875 237 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A786.[MT7]-ELFGPELFR.2b4_1.heavy 626.346 / 591.326 20131.0 38.88770008087158 46 20 10 6 10 21.73041051928988 4.601845874528276 0.032001495361328125 3 0.9994012622762569 50.43388076740338 20131.0 27.621624946452286 1.0 - - - - - - - 783.0 40 10 RFC4 replication factor C (activator 1) 4, 37kDa 1877 237 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A786.[MT7]-ELFGPELFR.2y6_1.heavy 626.346 / 718.388 59115.0 38.88770008087158 46 20 10 6 10 21.73041051928988 4.601845874528276 0.032001495361328125 3 0.9994012622762569 50.43388076740338 59115.0 122.94950105341874 0.0 - - - - - - - 730.4285714285714 118 7 RFC4 replication factor C (activator 1) 4, 37kDa 1879 237 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A786.[MT7]-ELFGPELFR.2y7_1.heavy 626.346 / 865.457 60073.0 38.88770008087158 46 20 10 6 10 21.73041051928988 4.601845874528276 0.032001495361328125 3 0.9994012622762569 50.43388076740338 60073.0 91.24403296370093 0.0 - - - - - - - 274.14285714285717 120 7 RFC4 replication factor C (activator 1) 4, 37kDa 1881 238 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A787.[MT7]-AITFLQSATR.2y8_1.heavy 626.362 / 923.495 52512.0 32.4452018737793 50 20 10 10 10 19.458210665820285 5.13921869371355 0.0 3 0.999080190364643 40.689288689381435 52512.0 122.77341097375043 0.0 - - - - - - - 269.0 105 5 RFC4 replication factor C (activator 1) 4, 37kDa 1883 238 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A787.[MT7]-AITFLQSATR.2y9_1.heavy 626.362 / 1036.58 33123.0 32.4452018737793 50 20 10 10 10 19.458210665820285 5.13921869371355 0.0 3 0.999080190364643 40.689288689381435 33123.0 77.84724876237624 0.0 - - - - - - - 740.75 66 8 RFC4 replication factor C (activator 1) 4, 37kDa 1885 238 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A787.[MT7]-AITFLQSATR.2y6_1.heavy 626.362 / 675.378 19658.0 32.4452018737793 50 20 10 10 10 19.458210665820285 5.13921869371355 0.0 3 0.999080190364643 40.689288689381435 19658.0 68.93064935064935 0.0 - - - - - - - 269.0 39 6 RFC4 replication factor C (activator 1) 4, 37kDa 1887 238 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A787.[MT7]-AITFLQSATR.2y7_1.heavy 626.362 / 822.447 26121.0 32.4452018737793 50 20 10 10 10 19.458210665820285 5.13921869371355 0.0 3 0.999080190364643 40.689288689381435 26121.0 53.50954459582449 0.0 - - - - - - - 269.0 52 7 RFC4 replication factor C (activator 1) 4, 37kDa 1889 239 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A788.[MT7]-TSTILAC[CAM]AK[MT7].2y4_1.heavy 626.862 / 593.32 40735.0 24.42340087890625 47 17 10 10 10 5.1958021319922905 19.246306433469933 0.0 3 0.9767493574276317 8.077924895158443 40735.0 58.01424186617557 0.0 - - - - - - - 272.0 81 6 RFC5 replication factor C (activator 1) 5, 36.5kDa 1891 239 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A788.[MT7]-TSTILAC[CAM]AK[MT7].2y5_1.heavy 626.862 / 706.404 52141.0 24.42340087890625 47 17 10 10 10 5.1958021319922905 19.246306433469933 0.0 3 0.9767493574276317 8.077924895158443 52141.0 79.98853201369353 0.0 - - - - - - - 651.8 104 10 RFC5 replication factor C (activator 1) 5, 36.5kDa 1893 239 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A788.[MT7]-TSTILAC[CAM]AK[MT7].2y3_1.heavy 626.862 / 522.283 26614.0 24.42340087890625 47 17 10 10 10 5.1958021319922905 19.246306433469933 0.0 3 0.9767493574276317 8.077924895158443 26614.0 31.100207451285655 0.0 - - - - - - - 272.0 53 5 RFC5 replication factor C (activator 1) 5, 36.5kDa 1895 239 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A788.[MT7]-TSTILAC[CAM]AK[MT7].2y6_1.heavy 626.862 / 819.488 10591.0 24.42340087890625 47 17 10 10 10 5.1958021319922905 19.246306433469933 0.0 3 0.9767493574276317 8.077924895158443 10591.0 17.08106067520162 1.0 - - - - - - - 272.0 21 4 RFC5 replication factor C (activator 1) 5, 36.5kDa 1897 240 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A594.[MT7]-GDILK[MT7].2y4_1.heavy 417.27 / 632.41 1805.0 22.40862512588501 37 15 8 6 8 5.941142174117705 16.831780332685035 0.03370094299316406 4 0.9585688432788717 6.042099539739231 1805.0 0.7998522895125554 8.0 - - - - - - - 282.25 17 4 GRB2 growth factor receptor-bound protein 2 1899 240 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A594.[MT7]-GDILK[MT7].2b3_1.heavy 417.27 / 430.242 32946.0 22.40862512588501 37 15 8 6 8 5.941142174117705 16.831780332685035 0.03370094299316406 4 0.9585688432788717 6.042099539739231 32946.0 31.36899179285492 1.0 - - - - - - - 354.57142857142856 92 7 GRB2 growth factor receptor-bound protein 2 1901 240 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A594.[MT7]-GDILK[MT7].2b4_1.heavy 417.27 / 543.326 14217.0 22.40862512588501 37 15 8 6 8 5.941142174117705 16.831780332685035 0.03370094299316406 4 0.9585688432788717 6.042099539739231 14217.0 17.449614666440333 1.0 - - - - - - - 226.0 28 6 GRB2 growth factor receptor-bound protein 2 1903 240 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A594.[MT7]-GDILK[MT7].2y3_1.heavy 417.27 / 517.383 21663.0 22.40862512588501 37 15 8 6 8 5.941142174117705 16.831780332685035 0.03370094299316406 4 0.9585688432788717 6.042099539739231 21663.0 57.47034042190831 1.0 - - - - - - - 426.0 43 9 GRB2 growth factor receptor-bound protein 2 1905 241 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A593.[MT7]-LLLGK[MT7].2b3_1.heavy 416.299 / 484.362 54333.0 28.73349952697754 42 12 10 10 10 0.9867235623804215 67.56367153717972 0.0 3 0.8840491928161752 3.588698001577199 54333.0 89.52350178544637 0.0 - - - - - - - 333.0 108 5 UBE2S;OR2W3;OCA2;CCDC55 ubiquitin-conjugating enzyme E2S;olfactory receptor, family 2, subfamily W, member 3;oculocutaneous albinism II;coiled-coil domain containing 55 1907 241 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A593.[MT7]-LLLGK[MT7].2y4_1.heavy 416.299 / 574.404 221000.0 28.73349952697754 42 12 10 10 10 0.9867235623804215 67.56367153717972 0.0 3 0.8840491928161752 3.588698001577199 221000.0 237.45903298350825 0.0 - - - - - - - 333.0 442 1 UBE2S;OR2W3;OCA2;CCDC55 ubiquitin-conjugating enzyme E2S;olfactory receptor, family 2, subfamily W, member 3;oculocutaneous albinism II;coiled-coil domain containing 55 1909 241 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A593.[MT7]-LLLGK[MT7].2y3_1.heavy 416.299 / 461.32 169667.0 28.73349952697754 42 12 10 10 10 0.9867235623804215 67.56367153717972 0.0 3 0.8840491928161752 3.588698001577199 169667.0 88.88959957617499 0.0 - - - - - - - 333.0 339 1 UBE2S;OR2W3;OCA2;CCDC55 ubiquitin-conjugating enzyme E2S;olfactory receptor, family 2, subfamily W, member 3;oculocutaneous albinism II;coiled-coil domain containing 55 1911 241 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A593.[MT7]-LLLGK[MT7].2y2_1.heavy 416.299 / 348.236 143667.0 28.73349952697754 42 12 10 10 10 0.9867235623804215 67.56367153717972 0.0 3 0.8840491928161752 3.588698001577199 143667.0 231.20478931034484 0.0 - - - - - - - 333.0 287 1 UBE2S;OR2W3;OCA2;CCDC55 ubiquitin-conjugating enzyme E2S;olfactory receptor, family 2, subfamily W, member 3;oculocutaneous albinism II;coiled-coil domain containing 55 1913 242 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9946.[MT7]-GWFGAR.2b3_1.heavy 419.228 / 535.279 8331.0 29.481200218200684 41 18 10 3 10 4.368187323101706 18.169694507297216 0.05140113830566406 3 0.9889098222302218 11.708221512225057 8331.0 17.490855112659755 0.0 - - - - - - - 333.0 16 1 FBXO2 F-box protein 2 1915 242 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9946.[MT7]-GWFGAR.2y4_1.heavy 419.228 / 450.246 11997.0 29.481200218200684 41 18 10 3 10 4.368187323101706 18.169694507297216 0.05140113830566406 3 0.9889098222302218 11.708221512225057 11997.0 18.17703 0.0 - - - - - - - 333.0 23 3 FBXO2 F-box protein 2 1917 242 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9946.[MT7]-GWFGAR.2y5_1.heavy 419.228 / 636.325 16663.0 29.481200218200684 41 18 10 3 10 4.368187323101706 18.169694507297216 0.05140113830566406 3 0.9889098222302218 11.708221512225057 16663.0 75.02104803454128 0.0 - - - - - - - 333.0 33 4 FBXO2 F-box protein 2 1919 242 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9946.[MT7]-GWFGAR.2b4_1.heavy 419.228 / 592.3 20995.0 29.481200218200684 41 18 10 3 10 4.368187323101706 18.169694507297216 0.05140113830566406 3 0.9889098222302218 11.708221512225057 20995.0 48.274020689655174 0.0 - - - - - - - 333.0 41 2 FBXO2 F-box protein 2 1921 243 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10647.[MT7]-C[CAM]PLC[CAM]QQDWVVQR.3y6_1.heavy 578.284 / 802.421 5576.0 30.174400329589844 46 16 10 10 10 2.6163803800049696 31.162818407665497 0.0 3 0.9639611586080833 6.48132749024341 5576.0 21.703333333333333 0.0 - - - - - - - 328.0 11 3 RNF7 ring finger protein 7 1923 243 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10647.[MT7]-C[CAM]PLC[CAM]QQDWVVQR.3y4_1.heavy 578.284 / 501.314 7872.0 30.174400329589844 46 16 10 10 10 2.6163803800049696 31.162818407665497 0.0 3 0.9639611586080833 6.48132749024341 7872.0 6.06 0.0 - - - - - - - 328.0 15 6 RNF7 ring finger protein 7 1925 243 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10647.[MT7]-C[CAM]PLC[CAM]QQDWVVQR.3b3_1.heavy 578.284 / 515.277 14432.0 30.174400329589844 46 16 10 10 10 2.6163803800049696 31.162818407665497 0.0 3 0.9639611586080833 6.48132749024341 14432.0 28.453333333333333 0.0 - - - - - - - 874.6666666666666 28 9 RNF7 ring finger protein 7 1927 243 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10647.[MT7]-C[CAM]PLC[CAM]QQDWVVQR.3y5_1.heavy 578.284 / 687.394 5904.0 30.174400329589844 46 16 10 10 10 2.6163803800049696 31.162818407665497 0.0 3 0.9639611586080833 6.48132749024341 5904.0 8.100000000000001 1.0 - - - - - - - 328.0 13 4 RNF7 ring finger protein 7 1929 244 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A597.[MT7]-GPLGSIR.2y4_1.heavy 422.262 / 432.257 21332.0 25.535399436950684 30 5 10 5 10 0.6921722937519398 80.66914769473196 0.04260063171386719 3 0.6407539958195797 1.9939410540444538 21332.0 29.77426645740025 0.0 - - - - - - - 577.0 42 1 SIAH1 seven in absentia homolog 1 (Drosophila) 1931 244 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A597.[MT7]-GPLGSIR.2y5_1.heavy 422.262 / 545.341 64860.0 25.535399436950684 30 5 10 5 10 0.6921722937519398 80.66914769473196 0.04260063171386719 3 0.6407539958195797 1.9939410540444538 64860.0 75.60793692731971 0.0 - - - - - - - 865.0 129 1 SIAH1 seven in absentia homolog 1 (Drosophila) 1933 244 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A597.[MT7]-GPLGSIR.2y6_1.heavy 422.262 / 642.393 2594.0 25.535399436950684 30 5 10 5 10 0.6921722937519398 80.66914769473196 0.04260063171386719 3 0.6407539958195797 1.9939410540444538 2594.0 8.916484412643346 4.0 - - - - - - - 288.0 62 3 SIAH1 seven in absentia homolog 1 (Drosophila) 1935 244 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A597.[MT7]-GPLGSIR.2y1_1.heavy 422.262 / 175.119 60248.0 25.535399436950684 30 5 10 5 10 0.6921722937519398 80.66914769473196 0.04260063171386719 3 0.6407539958195797 1.9939410540444538 60248.0 18.860823270398292 0.0 - - - - - - - 721.0 120 2 SIAH1 seven in absentia homolog 1 (Drosophila) 1937 245 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A595.[MT7]-EVVAK[MT7].2b3_1.heavy 417.27 / 472.289 27357.0 17.36039924621582 50 20 10 10 10 10.239534870191449 9.766068602501893 0.0 3 0.9934826603280166 15.27886307623198 27357.0 49.93798087257758 0.0 - - - - - - - 337.6666666666667 54 3 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 1939 245 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A595.[MT7]-EVVAK[MT7].2y4_1.heavy 417.27 / 560.389 91189.0 17.36039924621582 50 20 10 10 10 10.239534870191449 9.766068602501893 0.0 3 0.9934826603280166 15.27886307623198 91189.0 31.486841749838923 0.0 - - - - - - - 371.3333333333333 182 6 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 1941 245 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A595.[MT7]-EVVAK[MT7].2b4_1.heavy 417.27 / 543.326 10943.0 17.36039924621582 50 20 10 10 10 10.239534870191449 9.766068602501893 0.0 3 0.9934826603280166 15.27886307623198 10943.0 15.002182861831281 2.0 - - - - - - - 364.6 33 10 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 1943 245 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A595.[MT7]-EVVAK[MT7].2y3_1.heavy 417.27 / 461.32 75991.0 17.36039924621582 50 20 10 10 10 10.239534870191449 9.766068602501893 0.0 3 0.9934826603280166 15.27886307623198 75991.0 52.380987101116034 0.0 - - - - - - - 337.6666666666667 151 3 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 1945 246 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A583.[MT7]-IAASK[MT7].2b3_1.heavy 389.257 / 400.268 15256.0 16.77790069580078 41 13 10 10 8 1.4921770162404255 55.10762377906529 0.0 4 0.9223989894211863 4.401283811469678 15256.0 60.9983164983165 0.0 - - - - - - - 316.8 30 10 CDK20;JUN;JUND;ORC1 cyclin-dependent kinase 20;jun proto-oncogene;jun D proto-oncogene;origin recognition complex, subunit 1 1947 246 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A583.[MT7]-IAASK[MT7].2y4_1.heavy 389.257 / 520.321 108177.0 16.77790069580078 41 13 10 10 8 1.4921770162404255 55.10762377906529 0.0 4 0.9223989894211863 4.401283811469678 108177.0 37.592709983480376 0.0 - - - - - - - 793.0 216 1 CDK20;JUN;JUND;ORC1 cyclin-dependent kinase 20;jun proto-oncogene;jun D proto-oncogene;origin recognition complex, subunit 1 1949 246 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A583.[MT7]-IAASK[MT7].2y3_1.heavy 389.257 / 449.284 30908.0 16.77790069580078 41 13 10 10 8 1.4921770162404255 55.10762377906529 0.0 4 0.9223989894211863 4.401283811469678 30908.0 7.268058044164038 0.0 - - - - - - - 297.0 61 2 CDK20;JUN;JUND;ORC1 cyclin-dependent kinase 20;jun proto-oncogene;jun D proto-oncogene;origin recognition complex, subunit 1 1951 246 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A583.[MT7]-IAASK[MT7].2y1_1.heavy 389.257 / 291.215 20407.0 16.77790069580078 41 13 10 10 8 1.4921770162404255 55.10762377906529 0.0 4 0.9223989894211863 4.401283811469678 20407.0 7.26956990171414 7.0 - - - - - - - 2179.0 55 1 CDK20;JUN;JUND;ORC1 cyclin-dependent kinase 20;jun proto-oncogene;jun D proto-oncogene;origin recognition complex, subunit 1 1953 247 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10651.[MT7]-IHPTGK[MT7].2y4_1.heavy 470.795 / 546.337 102806.0 15.600299835205078 46 16 10 10 10 2.505013513295689 39.91994433133268 0.0 3 0.9630726204914414 6.402396072598431 102806.0 282.7165 0.0 - - - - - - - 771.4285714285714 205 7 RPA3 replication protein A3, 14kDa 1955 247 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10651.[MT7]-IHPTGK[MT7].2y5_1.heavy 470.795 / 683.396 14404.0 15.600299835205078 46 16 10 10 10 2.505013513295689 39.91994433133268 0.0 3 0.9630726204914414 6.402396072598431 14404.0 78.02166666666668 0.0 - - - - - - - 300.0 28 6 RPA3 replication protein A3, 14kDa 1957 247 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10651.[MT7]-IHPTGK[MT7].2y3_1.heavy 470.795 / 449.284 14944.0 15.600299835205078 46 16 10 10 10 2.505013513295689 39.91994433133268 0.0 3 0.9630726204914414 6.402396072598431 14944.0 13.659995624000672 0.0 - - - - - - - 270.0 29 4 RPA3 replication protein A3, 14kDa 1959 247 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10651.[MT7]-IHPTGK[MT7].2y2_1.heavy 470.795 / 348.236 7202.0 15.600299835205078 46 16 10 10 10 2.505013513295689 39.91994433133268 0.0 3 0.9630726204914414 6.402396072598431 7202.0 16.804666666666666 1.0 - - - - - - - 720.0 14 8 RPA3 replication protein A3, 14kDa 1961 248 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9935.[MT7]-SPDPTPPALDQETSSLLR.3y6_1.heavy 690.027 / 676.399 8699.0 32.79932403564453 27 12 0 5 10 2.0226008060701517 44.39945557078852 0.0493011474609375 3 0.8940170231234826 3.7569194012192177 8699.0 18.630946501014197 0.0 - - - - - - - 272.0 17 3 ANAPC11 anaphase promoting complex subunit 11 1963 248 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9935.[MT7]-SPDPTPPALDQETSSLLR.3b5_1.heavy 690.027 / 642.321 11690.0 32.79932403564453 27 12 0 5 10 2.0226008060701517 44.39945557078852 0.0493011474609375 3 0.8940170231234826 3.7569194012192177 11690.0 46.89045124991887 0.0 - - - - - - - 272.0 23 4 ANAPC11 anaphase promoting complex subunit 11 1965 248 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9935.[MT7]-SPDPTPPALDQETSSLLR.3y8_1.heavy 690.027 / 933.5 4078.0 32.79932403564453 27 12 0 5 10 2.0226008060701517 44.39945557078852 0.0493011474609375 3 0.8940170231234826 3.7569194012192177 4078.0 15.40554800540906 0.0 - - - - - - - 272.0 8 4 ANAPC11 anaphase promoting complex subunit 11 1967 248 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9935.[MT7]-SPDPTPPALDQETSSLLR.3y9_1.heavy 690.027 / 1048.53 2447.0 32.79932403564453 27 12 0 5 10 2.0226008060701517 44.39945557078852 0.0493011474609375 3 0.8940170231234826 3.7569194012192177 2447.0 -0.24478380221542556 3.0 - - - - - - - 272.0 116 4 ANAPC11 anaphase promoting complex subunit 11 1969 249 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9934.[MT7]-C[CAM]LGWC[CAM]PQPVPVLGGR.3y6_1.heavy 613.987 / 598.367 110033.0 34.806400299072266 50 20 10 10 10 8.872904398142705 11.270266816008096 0.0 3 0.9966078952617865 21.1838504694626 110033.0 284.4707139246097 0.0 - - - - - - - 257.25 220 4 ANAPC11 anaphase promoting complex subunit 11 1971 249 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9934.[MT7]-C[CAM]LGWC[CAM]PQPVPVLGGR.3b4_1.heavy 613.987 / 661.325 32701.0 34.806400299072266 50 20 10 10 10 8.872904398142705 11.270266816008096 0.0 3 0.9966078952617865 21.1838504694626 32701.0 43.89111593893112 0.0 - - - - - - - 257.25 65 4 ANAPC11 anaphase promoting complex subunit 11 1973 249 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9934.[MT7]-C[CAM]LGWC[CAM]PQPVPVLGGR.3b5_1.heavy 613.987 / 821.356 50389.0 34.806400299072266 50 20 10 10 10 8.872904398142705 11.270266816008096 0.0 3 0.9966078952617865 21.1838504694626 50389.0 83.02805506018922 0.0 - - - - - - - 247.0 100 5 ANAPC11 anaphase promoting complex subunit 11 1975 249 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9934.[MT7]-C[CAM]LGWC[CAM]PQPVPVLGGR.3y8_1.heavy 613.987 / 794.488 111884.0 34.806400299072266 50 20 10 10 10 8.872904398142705 11.270266816008096 0.0 3 0.9966078952617865 21.1838504694626 111884.0 197.91473952303772 0.0 - - - - - - - 308.5 223 4 ANAPC11 anaphase promoting complex subunit 11 1977 250 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9933.[MT7]-C[CAM]LGWC[CAM]PQPVPVLGGR.2y8_1.heavy 920.478 / 794.488 18886.0 34.8474006652832 48 18 10 10 10 3.5761042584602967 23.15924535041514 0.0 3 0.9850898304868059 10.094387705208963 18886.0 58.832174769621865 0.0 - - - - - - - 393.75 37 8 ANAPC11 anaphase promoting complex subunit 11 1979 250 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9933.[MT7]-C[CAM]LGWC[CAM]PQPVPVLGGR.2y6_1.heavy 920.478 / 598.367 31477.0 34.8474006652832 48 18 10 10 10 3.5761042584602967 23.15924535041514 0.0 3 0.9850898304868059 10.094387705208963 31477.0 98.0546629896954 0.0 - - - - - - - 262.5 62 4 ANAPC11 anaphase promoting complex subunit 11 1981 250 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9933.[MT7]-C[CAM]LGWC[CAM]PQPVPVLGGR.2y10_1.heavy 920.478 / 1019.6 49524.0 34.8474006652832 48 18 10 10 10 3.5761042584602967 23.15924535041514 0.0 3 0.9850898304868059 10.094387705208963 49524.0 288.2471633577388 0.0 - - - - - - - 330.0 99 7 ANAPC11 anaphase promoting complex subunit 11 1983 250 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9933.[MT7]-C[CAM]LGWC[CAM]PQPVPVLGGR.2y11_1.heavy 920.478 / 1179.63 24552.0 34.8474006652832 48 18 10 10 10 3.5761042584602967 23.15924535041514 0.0 3 0.9850898304868059 10.094387705208963 24552.0 135.52583630668664 0.0 - - - - - - - 324.54545454545456 49 11 ANAPC11 anaphase promoting complex subunit 11 1985 251 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A588.[MT7]-AGDRLSGAAAR.3y7_1.heavy 396.89 / 645.368 8870.0 16.343100547790527 27 20 0 3 4 6.217230758782586 16.084331413746863 0.05100059509277344 8 0.9922738722392864 14.031413142664304 8870.0 12.077156952489506 0.0 - - - - - - - 289.5 17 4 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 1987 251 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A588.[MT7]-AGDRLSGAAAR.3y6_1.heavy 396.89 / 532.284 17548.0 16.343100547790527 27 20 0 3 4 6.217230758782586 16.084331413746863 0.05100059509277344 8 0.9922738722392864 14.031413142664304 17548.0 15.428580152045587 2.0 - - - - - - - 289.5 37 2 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 1989 251 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A588.[MT7]-AGDRLSGAAAR.3y1_1.heavy 396.89 / 175.119 16970.0 16.343100547790527 27 20 0 3 4 6.217230758782586 16.084331413746863 0.05100059509277344 8 0.9922738722392864 14.031413142664304 16970.0 6.320107141512063 5.0 - - - - - - - 1735.6666666666667 284 3 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 1991 251 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A588.[MT7]-AGDRLSGAAAR.3y5_1.heavy 396.89 / 445.252 11956.0 16.343100547790527 27 20 0 3 4 6.217230758782586 16.084331413746863 0.05100059509277344 8 0.9922738722392864 14.031413142664304 11956.0 66.91303807537678 1.0 - - - - - - - 747.125 27 8 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 1993 252 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 TNAA_ECO24.GLTFTYEPK.2y7.peptide 528.27 / 885.44 321333.0 29.194000244140625 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 321333.0 966.5960277697786 0.0 - - - - - - - 2124.875 642 8 1995 252 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 TNAA_ECO24.GLTFTYEPK.2y6.peptide 528.27 / 784.39 400333.0 29.194000244140625 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 400333.0 1226.695390148608 0.0 - - - - - - - 667.0 800 7 1997 252 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 TNAA_ECO24.GLTFTYEPK.2y5.peptide 528.27 / 637.32 839348.0 29.194000244140625 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 839348.0 2476.30698612357 0.0 - - - - - - - 2259.0 1678 9 1999 253 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A589.[MT7]-GIDVVR.2b3_1.heavy 401.749 / 430.242 526448.0 24.54759979248047 35 5 10 10 10 0.8939007976611615 65.62879381245578 0.0 3 0.6116219411447342 1.9122971748531041 526448.0 181.73363322324727 1.0 - - - - - - - 335.0 1261 5 RFC2 replication factor C (activator 1) 2, 40kDa 2001 253 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A589.[MT7]-GIDVVR.2y5_1.heavy 401.749 / 601.367 127284.0 24.54759979248047 35 5 10 10 10 0.8939007976611615 65.62879381245578 0.0 3 0.6116219411447342 1.9122971748531041 127284.0 138.83810042047986 0.0 - - - - - - - 269.0 254 8 RFC2 replication factor C (activator 1) 2, 40kDa 2003 253 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A589.[MT7]-GIDVVR.2b4_1.heavy 401.749 / 529.31 1147890.0 24.54759979248047 35 5 10 10 10 0.8939007976611615 65.62879381245578 0.0 3 0.6116219411447342 1.9122971748531041 1147890.0 735.6493338183084 1.0 - - - - - - - 824.2222222222222 2295 9 RFC2 replication factor C (activator 1) 2, 40kDa 2005 253 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A589.[MT7]-GIDVVR.2y1_1.heavy 401.749 / 175.119 41870.0 24.54759979248047 35 5 10 10 10 0.8939007976611615 65.62879381245578 0.0 3 0.6116219411447342 1.9122971748531041 41870.0 6.02946305155446 3.0 - - - - - - - 1675.0 137 1 RFC2 replication factor C (activator 1) 2, 40kDa 2007 254 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A586.[MT7]-GLLTSR.2y4_1.heavy 395.749 / 476.283 14809.0 22.92735004425049 32 16 2 6 8 1.97939088395254 34.31006447156177 0.035800933837890625 4 0.9630188846771943 6.397713802650007 14809.0 26.032440212176624 0.0 - - - - - - - 381.85714285714283 29 7 FANCL Fanconi anemia, complementation group L 2009 254 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A586.[MT7]-GLLTSR.2b3_1.heavy 395.749 / 428.299 18450.0 22.92735004425049 32 16 2 6 8 1.97939088395254 34.31006447156177 0.035800933837890625 4 0.9630188846771943 6.397713802650007 18450.0 35.47554916761921 0.0 - - - - - - - 819.125 36 8 FANCL Fanconi anemia, complementation group L 2011 254 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A586.[MT7]-GLLTSR.2y5_1.heavy 395.749 / 589.367 23791.0 22.92735004425049 32 16 2 6 8 1.97939088395254 34.31006447156177 0.035800933837890625 4 0.9630188846771943 6.397713802650007 23791.0 66.62001803237914 2.0 - - - - - - - 317.7692307692308 101 13 FANCL Fanconi anemia, complementation group L 2013 254 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A586.[MT7]-GLLTSR.2b4_1.heavy 395.749 / 529.347 7768.0 22.92735004425049 32 16 2 6 8 1.97939088395254 34.31006447156177 0.035800933837890625 4 0.9630188846771943 6.397713802650007 7768.0 11.212877968473475 0.0 - - - - - - - 303.75 15 8 FANCL Fanconi anemia, complementation group L 2015 255 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A587.[MT7]-TGAAGK[MT7].2y4_1.heavy 396.745 / 490.311 3907.0 12.597100257873535 44 14 10 10 10 2.2395487591103587 44.651852116729145 0.0 3 0.9352155643291409 4.822298029957972 3907.0 0.0 2.0 - - - - - - - 674.6153846153846 8 13 FEN1 flap structure-specific endonuclease 1 2017 255 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A587.[MT7]-TGAAGK[MT7].2y5_1.heavy 396.745 / 547.332 25789.0 12.597100257873535 44 14 10 10 10 2.2395487591103587 44.651852116729145 0.0 3 0.9352155643291409 4.822298029957972 25789.0 47.469026431484714 0.0 - - - - - - - 737.9166666666666 51 12 FEN1 flap structure-specific endonuclease 1 2019 255 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A587.[MT7]-TGAAGK[MT7].2y3_1.heavy 396.745 / 419.273 10246.0 12.597100257873535 44 14 10 10 10 2.2395487591103587 44.651852116729145 0.0 3 0.9352155643291409 4.822298029957972 10246.0 7.866410748560458 1.0 - - - - - - - 239.44827586206895 20 29 FEN1 flap structure-specific endonuclease 1 2021 255 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A587.[MT7]-TGAAGK[MT7].2y2_1.heavy 396.745 / 348.236 10854.0 12.597100257873535 44 14 10 10 10 2.2395487591103587 44.651852116729145 0.0 3 0.9352155643291409 4.822298029957972 10854.0 11.643448717465816 0.0 - - - - - - - 1196.3333333333333 21 9 FEN1 flap structure-specific endonuclease 1 2023 256 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1361.[MT7]-TLEGLSDLSTIK[MT7].3b4_1.heavy 522.306 / 545.305 28759.0 33.82899856567383 45 15 10 10 10 1.613426046108045 42.80557902374445 0.0 3 0.9519737602671327 5.60879336420555 28759.0 52.65345428196319 0.0 - - - - - - - 367.7142857142857 57 7 PIAS2 protein inhibitor of activated STAT, 2 2025 256 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1361.[MT7]-TLEGLSDLSTIK[MT7].3b5_1.heavy 522.306 / 658.389 13561.0 33.82899856567383 45 15 10 10 10 1.613426046108045 42.80557902374445 0.0 3 0.9519737602671327 5.60879336420555 13561.0 26.74857631015184 1.0 - - - - - - - 374.4 39 5 PIAS2 protein inhibitor of activated STAT, 2 2027 256 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1361.[MT7]-TLEGLSDLSTIK[MT7].3y4_1.heavy 522.306 / 592.379 34371.0 33.82899856567383 45 15 10 10 10 1.613426046108045 42.80557902374445 0.0 3 0.9519737602671327 5.60879336420555 34371.0 51.45575756623042 0.0 - - - - - - - 292.5 68 8 PIAS2 protein inhibitor of activated STAT, 2 2029 256 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1361.[MT7]-TLEGLSDLSTIK[MT7].3b7_1.heavy 522.306 / 860.448 26421.0 33.82899856567383 45 15 10 10 10 1.613426046108045 42.80557902374445 0.0 3 0.9519737602671327 5.60879336420555 26421.0 146.83165441310948 0.0 - - - - - - - 234.0 52 3 PIAS2 protein inhibitor of activated STAT, 2 2031 257 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A810.[MT7]-EIPSHVLSK[MT7].3y3_1.heavy 433.262 / 491.331 294438.0 23.20199966430664 47 17 10 10 10 3.093186452740355 32.32912128895648 0.0 3 0.9729010237205881 7.479977190123682 294438.0 216.93890655395984 0.0 - - - - - - - 242.0 588 1 TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) 2033 257 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A810.[MT7]-EIPSHVLSK[MT7].3b4_1.heavy 433.262 / 571.321 107969.0 23.20199966430664 47 17 10 10 10 3.093186452740355 32.32912128895648 0.0 3 0.9729010237205881 7.479977190123682 107969.0 199.57868702900205 0.0 - - - - - - - 773.2 215 10 TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) 2035 257 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A810.[MT7]-EIPSHVLSK[MT7].3y4_1.heavy 433.262 / 590.399 88162.0 23.20199966430664 47 17 10 10 10 3.093186452740355 32.32912128895648 0.0 3 0.9729010237205881 7.479977190123682 88162.0 145.9044279288927 0.0 - - - - - - - 834.5454545454545 176 11 TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) 2037 257 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A810.[MT7]-EIPSHVLSK[MT7].3y2_1.heavy 433.262 / 378.247 205792.0 23.20199966430664 47 17 10 10 10 3.093186452740355 32.32912128895648 0.0 3 0.9729010237205881 7.479977190123682 205792.0 222.76991759560144 0.0 - - - - - - - 290.2 411 5 TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) 2039 258 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1010.[MT7]-IALTDAYLLYTPSQIALTAILSSASR.4y5_1.heavy 724.909 / 507.252 2939.0 52.155550956726074 40 14 10 6 10 1.6477563785177245 50.49859343081773 0.036998748779296875 3 0.9304358053241092 4.651779693661388 2939.0 31.93890222819823 0.0 - - - - - - - 139.38888888888889 5 18 CCNH cyclin H 2041 258 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1010.[MT7]-IALTDAYLLYTPSQIALTAILSSASR.4b7_1.heavy 724.909 / 892.49 2689.0 52.155550956726074 40 14 10 6 10 1.6477563785177245 50.49859343081773 0.036998748779296875 3 0.9304358053241092 4.651779693661388 2689.0 55.02982503220266 0.0 - - - - - - - 91.3125 5 16 CCNH cyclin H 2043 258 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1010.[MT7]-IALTDAYLLYTPSQIALTAILSSASR.4b5_1.heavy 724.909 / 658.389 1891.0 52.155550956726074 40 14 10 6 10 1.6477563785177245 50.49859343081773 0.036998748779296875 3 0.9304358053241092 4.651779693661388 1891.0 54.24184210526316 0.0 - - - - - - - 98.42105263157895 3 19 CCNH cyclin H 2045 258 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1010.[MT7]-IALTDAYLLYTPSQIALTAILSSASR.4b6_1.heavy 724.909 / 729.426 3418.0 52.155550956726074 40 14 10 6 10 1.6477563785177245 50.49859343081773 0.036998748779296875 3 0.9304358053241092 4.651779693661388 3418.0 49.249932017543856 0.0 - - - - - - - 70.06666666666666 6 15 CCNH cyclin H 2047 259 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1150.[MT7]-ILDFGLAR.2y5_1.heavy 524.817 / 563.33 98572.0 36.86690139770508 50 20 10 10 10 8.39481382809263 11.91211646235171 0.0 3 0.9914983655216051 13.375283321674315 98572.0 574.5660791327914 0.0 - - - - - - - 244.28571428571428 197 7 LOC100509672;LOC100509694;MAPK14;MAPK8;MAPK11;MAPK9;MAPK10;MAPK13;MAPK12 mitogen-activated protein kinase 12-like;mitogen-activated protein kinase 12-like;mitogen-activated protein kinase 14;mitogen-activated protein kinase 8;mitogen-activated protein kinase 11;mitogen-activated protein kinase 9;mitogen-activated protein kinase 10;mitogen-activated protein kinase 13;mitogen-activated protein kinase 12 2049 259 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1150.[MT7]-ILDFGLAR.2y6_1.heavy 524.817 / 678.357 33654.0 36.86690139770508 50 20 10 10 10 8.39481382809263 11.91211646235171 0.0 3 0.9914983655216051 13.375283321674315 33654.0 116.7977646555413 0.0 - - - - - - - 205.2 67 10 LOC100509672;LOC100509694;MAPK14;MAPK8;MAPK11;MAPK9;MAPK10;MAPK13;MAPK12 mitogen-activated protein kinase 12-like;mitogen-activated protein kinase 12-like;mitogen-activated protein kinase 14;mitogen-activated protein kinase 8;mitogen-activated protein kinase 11;mitogen-activated protein kinase 9;mitogen-activated protein kinase 10;mitogen-activated protein kinase 13;mitogen-activated protein kinase 12 2051 259 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1150.[MT7]-ILDFGLAR.2b5_1.heavy 524.817 / 690.394 22209.0 36.86690139770508 50 20 10 10 10 8.39481382809263 11.91211646235171 0.0 3 0.9914983655216051 13.375283321674315 22209.0 75.32877192982457 0.0 - - - - - - - 561.5714285714286 44 7 LOC100509672;LOC100509694;MAPK14;MAPK8;MAPK11;MAPK9;MAPK10;MAPK13;MAPK12 mitogen-activated protein kinase 12-like;mitogen-activated protein kinase 12-like;mitogen-activated protein kinase 14;mitogen-activated protein kinase 8;mitogen-activated protein kinase 11;mitogen-activated protein kinase 9;mitogen-activated protein kinase 10;mitogen-activated protein kinase 13;mitogen-activated protein kinase 12 2053 259 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1150.[MT7]-ILDFGLAR.2y7_1.heavy 524.817 / 791.441 96863.0 36.86690139770508 50 20 10 10 10 8.39481382809263 11.91211646235171 0.0 3 0.9914983655216051 13.375283321674315 96863.0 157.95535816108338 0.0 - - - - - - - 1217.375 193 8 LOC100509672;LOC100509694;MAPK14;MAPK8;MAPK11;MAPK9;MAPK10;MAPK13;MAPK12 mitogen-activated protein kinase 12-like;mitogen-activated protein kinase 12-like;mitogen-activated protein kinase 14;mitogen-activated protein kinase 8;mitogen-activated protein kinase 11;mitogen-activated protein kinase 9;mitogen-activated protein kinase 10;mitogen-activated protein kinase 13;mitogen-activated protein kinase 12 2055 260 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A818.[MT7]-SLPDLEILK[MT7].3b6_1.heavy 439.274 / 799.432 7378.0 36.05880165100098 43 17 10 6 10 4.169198028687889 23.985428207513458 0.03639984130859375 3 0.9769927150917793 8.12070040495615 7378.0 46.45407407407407 0.0 - - - - - - - 252.0 14 5 FBXO4 F-box protein 4 2057 260 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A818.[MT7]-SLPDLEILK[MT7].3y3_1.heavy 439.274 / 517.383 11877.0 36.05880165100098 43 17 10 6 10 4.169198028687889 23.985428207513458 0.03639984130859375 3 0.9769927150917793 8.12070040495615 11877.0 50.917138888888886 0.0 - - - - - - - 252.0 23 5 FBXO4 F-box protein 4 2059 260 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A818.[MT7]-SLPDLEILK[MT7].3b4_1.heavy 439.274 / 557.305 19796.0 36.05880165100098 43 17 10 6 10 4.169198028687889 23.985428207513458 0.03639984130859375 3 0.9769927150917793 8.12070040495615 19796.0 79.73388888888888 0.0 - - - - - - - 205.71428571428572 39 7 FBXO4 F-box protein 4 2061 260 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A818.[MT7]-SLPDLEILK[MT7].3b5_1.heavy 439.274 / 670.389 6839.0 36.05880165100098 43 17 10 6 10 4.169198028687889 23.985428207513458 0.03639984130859375 3 0.9769927150917793 8.12070040495615 6839.0 55.547877777777785 0.0 - - - - - - - 270.0 13 4 FBXO4 F-box protein 4 2063 261 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1260.[MT7]-DLVVMLHK[MT7].2y5_1.heavy 621.878 / 771.467 10284.0 43.08110046386719 48 18 10 10 10 4.429010901862748 22.578404572890555 0.0 3 0.9888939208291914 11.699821176313739 10284.0 13.442493919466717 0.0 - - - - - - - 252.0 20 11 STAG3 stromal antigen 3 2065 261 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1260.[MT7]-DLVVMLHK[MT7].2y6_1.heavy 621.878 / 870.535 6366.0 43.08110046386719 48 18 10 10 10 4.429010901862748 22.578404572890555 0.0 3 0.9888939208291914 11.699821176313739 6366.0 23.231871870273118 0.0 - - - - - - - 256.14285714285717 12 7 STAG3 stromal antigen 3 2067 261 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1260.[MT7]-DLVVMLHK[MT7].2b1_1.heavy 621.878 / 260.136 11427.0 43.08110046386719 48 18 10 10 10 4.429010901862748 22.578404572890555 0.0 3 0.9888939208291914 11.699821176313739 11427.0 42.627703142606734 0.0 - - - - - - - 261.0 22 10 STAG3 stromal antigen 3 2069 261 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1260.[MT7]-DLVVMLHK[MT7].2y7_1.heavy 621.878 / 983.619 7672.0 43.08110046386719 48 18 10 10 10 4.429010901862748 22.578404572890555 0.0 3 0.9888939208291914 11.699821176313739 7672.0 55.30429447852761 0.0 - - - - - - - 181.11111111111111 15 9 STAG3 stromal antigen 3 2071 262 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1261.[MT7]-LLSQGVIAFR.2y8_1.heavy 624.383 / 877.489 73215.0 35.86470031738281 48 18 10 10 10 6.476430021447616 15.440605344122586 0.0 3 0.9896912640312655 12.144674204348497 73215.0 57.401428525700226 0.0 - - - - - - - 707.375 146 8 SKP2 S-phase kinase-associated protein 2 (p45) 2073 262 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1261.[MT7]-LLSQGVIAFR.2y9_1.heavy 624.383 / 990.573 106628.0 35.86470031738281 48 18 10 10 10 6.476430021447616 15.440605344122586 0.0 3 0.9896912640312655 12.144674204348497 106628.0 266.3324886055995 0.0 - - - - - - - 1199.5714285714287 213 7 SKP2 S-phase kinase-associated protein 2 (p45) 2075 262 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1261.[MT7]-LLSQGVIAFR.2y6_1.heavy 624.383 / 662.398 47654.0 35.86470031738281 48 18 10 10 10 6.476430021447616 15.440605344122586 0.0 3 0.9896912640312655 12.144674204348497 47654.0 78.94086039884758 0.0 - - - - - - - 235.0 95 7 SKP2 S-phase kinase-associated protein 2 (p45) 2077 262 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1261.[MT7]-LLSQGVIAFR.2b5_1.heavy 624.383 / 643.39 19171.0 35.86470031738281 48 18 10 10 10 6.476430021447616 15.440605344122586 0.0 3 0.9896912640312655 12.144674204348497 19171.0 13.534017818425568 0.0 - - - - - - - 328.6 38 5 SKP2 S-phase kinase-associated protein 2 (p45) 2079 263 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1255.[MT7]-GIDIIRGPILSFASTR.3y7_1.heavy 620.699 / 781.42 14727.0 38.332401275634766 50 20 10 10 10 9.178591096569738 10.894918288425815 0.0 3 0.9971901116163324 23.276414888129654 14727.0 25.80357092668862 0.0 - - - - - - - 337.0 29 12 RFC5 replication factor C (activator 1) 5, 36.5kDa 2081 263 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1255.[MT7]-GIDIIRGPILSFASTR.3y6_1.heavy 620.699 / 668.336 20067.0 38.332401275634766 50 20 10 10 10 9.178591096569738 10.894918288425815 0.0 3 0.9971901116163324 23.276414888129654 20067.0 19.42634397528321 1.0 - - - - - - - 404.375 40 8 RFC5 replication factor C (activator 1) 5, 36.5kDa 2083 263 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1255.[MT7]-GIDIIRGPILSFASTR.3b4_1.heavy 620.699 / 543.326 16345.0 38.332401275634766 50 20 10 10 10 9.178591096569738 10.894918288425815 0.0 3 0.9971901116163324 23.276414888129654 16345.0 0.0 2.0 - - - - - - - 791.0 32 9 RFC5 replication factor C (activator 1) 5, 36.5kDa 2085 263 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1255.[MT7]-GIDIIRGPILSFASTR.3y10_1.heavy 620.699 / 1048.58 17154.0 38.332401275634766 50 20 10 10 10 9.178591096569738 10.894918288425815 0.0 3 0.9971901116163324 23.276414888129654 17154.0 67.43301064194988 0.0 - - - - - - - 341.6666666666667 34 9 RFC5 replication factor C (activator 1) 5, 36.5kDa 2087 264 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1009.[MT7]-IALTDAYLLYTPSQIALTAILSSASR.3b6_1.heavy 966.21 / 729.426 19255.0 52.155550956726074 40 14 10 6 10 2.461511664199504 35.57804717187787 0.036998748779296875 3 0.9454032346190258 5.257543920418914 19255.0 170.912182560437 0.0 - - - - - - - 234.8125 38 16 CCNH cyclin H 2089 264 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1009.[MT7]-IALTDAYLLYTPSQIALTAILSSASR.3b5_1.heavy 966.21 / 658.389 8396.0 52.155550956726074 40 14 10 6 10 2.461511664199504 35.57804717187787 0.036998748779296875 3 0.9454032346190258 5.257543920418914 8396.0 121.01086297071129 0.0 - - - - - - - 148.83333333333334 16 18 CCNH cyclin H 2091 264 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1009.[MT7]-IALTDAYLLYTPSQIALTAILSSASR.3b8_1.heavy 966.21 / 1005.57 16313.0 52.155550956726074 40 14 10 6 10 2.461511664199504 35.57804717187787 0.036998748779296875 3 0.9454032346190258 5.257543920418914 16313.0 114.04230095325504 0.0 - - - - - - - 186.875 32 16 CCNH cyclin H 2093 264 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1009.[MT7]-IALTDAYLLYTPSQIALTAILSSASR.3b7_1.heavy 966.21 / 892.49 21886.0 52.155550956726074 40 14 10 6 10 2.461511664199504 35.57804717187787 0.036998748779296875 3 0.9454032346190258 5.257543920418914 21886.0 142.90150327916706 0.0 - - - - - - - 227.375 43 16 CCNH cyclin H 2095 265 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1148.[MT7]-TSTILAAAR.2y5_1.heavy 524.318 / 501.314 31326.0 24.846200942993164 50 20 10 10 10 9.345766114438211 10.700032375677655 0.0 3 0.9936833517812195 15.519944069607128 31326.0 18.395546003657778 0.0 - - - - - - - 285.0 62 1 RFC4 replication factor C (activator 1) 4, 37kDa 2097 265 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1148.[MT7]-TSTILAAAR.2b4_1.heavy 524.318 / 547.321 19650.0 24.846200942993164 50 20 10 10 10 9.345766114438211 10.700032375677655 0.0 3 0.9936833517812195 15.519944069607128 19650.0 17.040361423811298 1.0 - - - - - - - 285.0 40 3 RFC4 replication factor C (activator 1) 4, 37kDa 2099 265 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1148.[MT7]-TSTILAAAR.2b5_1.heavy 524.318 / 660.405 22783.0 24.846200942993164 50 20 10 10 10 9.345766114438211 10.700032375677655 0.0 3 0.9936833517812195 15.519944069607128 22783.0 62.115711984880235 0.0 - - - - - - - 285.0 45 6 RFC4 replication factor C (activator 1) 4, 37kDa 2101 265 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1148.[MT7]-TSTILAAAR.2y7_1.heavy 524.318 / 715.446 13955.0 24.846200942993164 50 20 10 10 10 9.345766114438211 10.700032375677655 0.0 3 0.9936833517812195 15.519944069607128 13955.0 45.704404956217346 0.0 - - - - - - - 732.2857142857143 27 7 RFC4 replication factor C (activator 1) 4, 37kDa 2103 266 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A950.[MT7]-LTEHLIPLLPQLLAK[MT7].3b6_1.heavy 663.09 / 851.511 53437.0 42.964599609375 44 14 10 10 10 1.6549995408673044 42.75121245459532 0.0 3 0.9481057430653237 5.393944540726512 53437.0 107.47744478968295 0.0 - - - - - - - 282.85714285714283 106 7 STAG3 stromal antigen 3 2105 266 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A950.[MT7]-LTEHLIPLLPQLLAK[MT7].3b5_1.heavy 663.09 / 738.427 45355.0 42.964599609375 44 14 10 10 10 1.6549995408673044 42.75121245459532 0.0 3 0.9481057430653237 5.393944540726512 45355.0 197.2255303030303 0.0 - - - - - - - 264.0 90 10 STAG3 stromal antigen 3 2107 266 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A950.[MT7]-LTEHLIPLLPQLLAK[MT7].3y4_1.heavy 663.09 / 588.42 37439.0 42.964599609375 44 14 10 10 10 1.6549995408673044 42.75121245459532 0.0 3 0.9481057430653237 5.393944540726512 37439.0 61.95312642748863 0.0 - - - - - - - 293.3333333333333 74 9 STAG3 stromal antigen 3 2109 266 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A950.[MT7]-LTEHLIPLLPQLLAK[MT7].3y9_1.heavy 663.09 / 1136.75 8906.0 42.964599609375 44 14 10 10 10 1.6549995408673044 42.75121245459532 0.0 3 0.9481057430653237 5.393944540726512 8906.0 43.04566666666666 0.0 - - - - - - - 391.875 17 8 STAG3 stromal antigen 3 2111 267 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1147.[MT7]-GLGAEIAK[MT7].2b6_1.heavy 523.826 / 685.4 26643.0 24.263099670410156 44 14 10 10 10 1.3908008132658998 42.5904145122237 0.0 3 0.9461818277762347 5.295788658349338 26643.0 99.15101402154035 0.0 - - - - - - - 266.0 53 3 SAE1 SUMO1 activating enzyme subunit 1 2113 267 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1147.[MT7]-GLGAEIAK[MT7].2y6_1.heavy 523.826 / 732.437 62878.0 24.263099670410156 44 14 10 10 10 1.3908008132658998 42.5904145122237 0.0 3 0.9461818277762347 5.295788658349338 62878.0 149.60223236369578 0.0 - - - - - - - 266.0 125 10 SAE1 SUMO1 activating enzyme subunit 1 2115 267 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1147.[MT7]-GLGAEIAK[MT7].2y2_1.heavy 523.826 / 362.252 62079.0 24.263099670410156 44 14 10 10 10 1.3908008132658998 42.5904145122237 0.0 3 0.9461818277762347 5.295788658349338 62079.0 89.41201468570617 0.0 - - - - - - - 266.0 124 2 SAE1 SUMO1 activating enzyme subunit 1 2117 267 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1147.[MT7]-GLGAEIAK[MT7].2b5_1.heavy 523.826 / 572.316 75400.0 24.263099670410156 44 14 10 10 10 1.3908008132658998 42.5904145122237 0.0 3 0.9461818277762347 5.295788658349338 75400.0 169.28455284552845 0.0 - - - - - - - 266.0 150 3 SAE1 SUMO1 activating enzyme subunit 1 2119 268 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1146.[MT7]-LGSGPSIK[MT7].2y4_1.heavy 523.826 / 588.384 18378.0 22.882400512695312 39 13 6 10 10 1.3178256157923505 50.55895195410852 0.0 3 0.9059884154681218 3.993089837563185 18378.0 33.11120111731844 0.0 - - - - - - - 742.5555555555555 36 9 PTTG1 pituitary tumor-transforming 1 2121 268 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1146.[MT7]-LGSGPSIK[MT7].2y5_1.heavy 523.826 / 645.405 18378.0 22.882400512695312 39 13 6 10 10 1.3178256157923505 50.55895195410852 0.0 3 0.9059884154681218 3.993089837563185 18378.0 32.59784916201117 0.0 - - - - - - - 368.8181818181818 36 11 PTTG1 pituitary tumor-transforming 1 2123 268 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1146.[MT7]-LGSGPSIK[MT7].2y6_1.heavy 523.826 / 732.437 10979.0 22.882400512695312 39 13 6 10 10 1.3178256157923505 50.55895195410852 0.0 3 0.9059884154681218 3.993089837563185 10979.0 21.310287490128403 1.0 - - - - - - - 278.6666666666667 138 6 PTTG1 pituitary tumor-transforming 1 2125 268 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1146.[MT7]-LGSGPSIK[MT7].2y7_1.heavy 523.826 / 789.459 47735.0 22.882400512695312 39 13 6 10 10 1.3178256157923505 50.55895195410852 0.0 3 0.9059884154681218 3.993089837563185 47735.0 29.904789973279787 0.0 - - - - - - - 358.0 95 4 PTTG1 pituitary tumor-transforming 1 2127 269 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A809.[MT7]-NAVIVALSSK[MT7].2y5_1.heavy 645.405 / 649.4 11999.0 31.55620002746582 42 17 10 5 10 1.8838410530437426 37.937794660989184 0.04940032958984375 3 0.9708800510784363 7.214521089950593 11999.0 19.269464692482913 0.0 - - - - - - - 694.875 23 8 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2129 269 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A809.[MT7]-NAVIVALSSK[MT7].2b4_1.heavy 645.405 / 542.342 16096.0 31.55620002746582 42 17 10 5 10 1.8838410530437426 37.937794660989184 0.04940032958984375 3 0.9708800510784363 7.214521089950593 16096.0 13.176602563650151 1.0 - - - - - - - 293.0 32 5 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2131 269 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A809.[MT7]-NAVIVALSSK[MT7].2y6_1.heavy 645.405 / 748.469 16389.0 31.55620002746582 42 17 10 5 10 1.8838410530437426 37.937794660989184 0.04940032958984375 3 0.9708800510784363 7.214521089950593 16389.0 36.86464609075135 0.0 - - - - - - - 293.0 32 5 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2133 269 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A809.[MT7]-NAVIVALSSK[MT7].2y7_1.heavy 645.405 / 861.553 10828.0 31.55620002746582 42 17 10 5 10 1.8838410530437426 37.937794660989184 0.04940032958984375 3 0.9708800510784363 7.214521089950593 10828.0 28.991457196814828 0.0 - - - - - - - 747.7777777777778 21 9 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2135 270 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1143.[MT7]-RPPDEQR.2y6_1.heavy 521.281 / 741.353 37127.0 13.119999885559082 43 16 10 7 10 3.660334666477491 27.319906268634888 0.021999359130859375 3 0.9644806155227755 6.528835268551777 37127.0 24.684521298343725 0.0 - - - - - - - 301.5833333333333 74 12 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 2137 270 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1143.[MT7]-RPPDEQR.2b5_1.heavy 521.281 / 739.385 12553.0 13.119999885559082 43 16 10 7 10 3.660334666477491 27.319906268634888 0.021999359130859375 3 0.9644806155227755 6.528835268551777 12553.0 3.5880319542766514 0.0 - - - - - - - 671.0769230769231 25 13 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 2139 270 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1143.[MT7]-RPPDEQR.2y5_1.heavy 521.281 / 644.3 1702.0 13.119999885559082 43 16 10 7 10 3.660334666477491 27.319906268634888 0.021999359130859375 3 0.9644806155227755 6.528835268551777 1702.0 4.594366197183098 3.0 - - - - - - - 248.33333333333334 3 15 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 2141 270 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1143.[MT7]-RPPDEQR.2b4_1.heavy 521.281 / 610.343 18511.0 13.119999885559082 43 16 10 7 10 3.660334666477491 27.319906268634888 0.021999359130859375 3 0.9644806155227755 6.528835268551777 18511.0 19.28078564111791 0.0 - - - - - - - 654.6923076923077 37 13 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 2143 271 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10032.[MT7]-QIVQK[MT7].2b3_1.heavy 452.297 / 485.32 33944.0 18.08049964904785 48 18 10 10 10 5.580164961967375 13.52614999666434 0.0 3 0.9875742629456249 11.059883690828512 33944.0 190.3621356863948 0.0 - - - - - - - 247.0 67 5 DMD;UBE2G2 dystrophin;ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 2145 271 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10032.[MT7]-QIVQK[MT7].2y4_1.heavy 452.297 / 631.426 106768.0 18.08049964904785 48 18 10 10 10 5.580164961967375 13.52614999666434 0.0 3 0.9875742629456249 11.059883690828512 106768.0 127.6982190393872 0.0 - - - - - - - 1234.2857142857142 213 7 DMD;UBE2G2 dystrophin;ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 2147 271 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10032.[MT7]-QIVQK[MT7].2b4_1.heavy 452.297 / 613.379 15018.0 18.08049964904785 48 18 10 10 10 5.580164961967375 13.52614999666434 0.0 3 0.9875742629456249 11.059883690828512 15018.0 23.376536200194366 0.0 - - - - - - - 274.3333333333333 30 6 DMD;UBE2G2 dystrophin;ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 2149 271 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10032.[MT7]-QIVQK[MT7].2y3_1.heavy 452.297 / 518.342 101008.0 18.08049964904785 48 18 10 10 10 5.580164961967375 13.52614999666434 0.0 3 0.9875742629456249 11.059883690828512 101008.0 216.44447314408345 0.0 - - - - - - - 329.0 202 5 DMD;UBE2G2 dystrophin;ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) 2151 272 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1257.[MT7]-TDFEVLTK[MT7].2y4_1.heavy 620.855 / 604.415 28638.0 29.660999298095703 50 20 10 10 10 11.585953643043096 8.631141042070889 0.0 3 0.9943197374893809 16.367124136754864 28638.0 23.005437096340096 0.0 - - - - - - - 329.0 57 3 MAP2K7 mitogen-activated protein kinase kinase 7 2153 272 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1257.[MT7]-TDFEVLTK[MT7].2b4_1.heavy 620.855 / 637.295 34892.0 29.660999298095703 50 20 10 10 10 11.585953643043096 8.631141042070889 0.0 3 0.9943197374893809 16.367124136754864 34892.0 50.722342864756826 0.0 - - - - - - - 893.7142857142857 69 7 MAP2K7 mitogen-activated protein kinase kinase 7 2155 272 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1257.[MT7]-TDFEVLTK[MT7].2y3_1.heavy 620.855 / 505.347 32588.0 29.660999298095703 50 20 10 10 10 11.585953643043096 8.631141042070889 0.0 3 0.9943197374893809 16.367124136754864 32588.0 24.86216068836911 0.0 - - - - - - - 329.0 65 2 MAP2K7 mitogen-activated protein kinase kinase 7 2157 272 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1257.[MT7]-TDFEVLTK[MT7].2y6_1.heavy 620.855 / 880.526 23042.0 29.660999298095703 50 20 10 10 10 11.585953643043096 8.631141042070889 0.0 3 0.9943197374893809 16.367124136754864 23042.0 56.58989644733765 0.0 - - - - - - - 329.0 46 5 MAP2K7 mitogen-activated protein kinase kinase 7 2159 273 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10620.[MT7]-VFC[CAM]ELFPEVVEEIK[MT7].3b4_1.heavy 676.032 / 680.319 78463.0 44.68479919433594 47 17 10 10 10 2.7184939642801114 31.808022689992185 0.0 3 0.9743958268565551 7.6961932713536045 78463.0 547.8953450873537 0.0 - - - - - - - 275.4 156 5 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 2161 273 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10620.[MT7]-VFC[CAM]ELFPEVVEEIK[MT7].3b5_1.heavy 676.032 / 793.404 88252.0 44.68479919433594 47 17 10 10 10 2.7184939642801114 31.808022689992185 0.0 3 0.9743958268565551 7.6961932713536045 88252.0 602.2699837104072 0.0 - - - - - - - 306.0 176 4 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 2163 273 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10620.[MT7]-VFC[CAM]ELFPEVVEEIK[MT7].3y4_1.heavy 676.032 / 662.384 59497.0 44.68479919433594 47 17 10 10 10 2.7184939642801114 31.808022689992185 0.0 3 0.9743958268565551 7.6961932713536045 59497.0 418.30997034781217 0.0 - - - - - - - 918.0 118 7 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 2165 273 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10620.[MT7]-VFC[CAM]ELFPEVVEEIK[MT7].3y5_1.heavy 676.032 / 761.453 45120.0 44.68479919433594 47 17 10 10 10 2.7184939642801114 31.808022689992185 0.0 3 0.9743958268565551 7.6961932713536045 45120.0 19.609808500700606 1.0 - - - - - - - 275.4 90 5 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 2167 274 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10621.[MT7]-FQLLFK[MT7].2y4_1.heavy 542.344 / 664.451 8211.0 37.768933614095054 36 18 2 6 10 3.6150317017902243 22.097370625419003 0.033802032470703125 3 0.9853854615714419 10.19622656906245 8211.0 30.028047295089277 0.0 - - - - - - - 287.125 16 8 UBE2W ubiquitin-conjugating enzyme E2W (putative) 2169 274 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10621.[MT7]-FQLLFK[MT7].2b3_1.heavy 542.344 / 533.32 12316.0 37.768933614095054 36 18 2 6 10 3.6150317017902243 22.097370625419003 0.033802032470703125 3 0.9853854615714419 10.19622656906245 12316.0 29.393526019870663 0.0 - - - - - - - 766.3333333333334 24 9 UBE2W ubiquitin-conjugating enzyme E2W (putative) 2171 274 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10621.[MT7]-FQLLFK[MT7].2y5_1.heavy 542.344 / 792.51 8539.0 37.768933614095054 36 18 2 6 10 3.6150317017902243 22.097370625419003 0.033802032470703125 3 0.9853854615714419 10.19622656906245 8539.0 65.60451219512196 0.0 - - - - - - - 229.6 17 10 UBE2W ubiquitin-conjugating enzyme E2W (putative) 2173 274 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10621.[MT7]-FQLLFK[MT7].2y3_1.heavy 542.344 / 551.367 N/A 37.768933614095054 36 18 2 6 10 3.6150317017902243 22.097370625419003 0.033802032470703125 3 0.9853854615714419 10.19622656906245 14779.0 12.80229545568133 3.0 - - - - - - - 364.8888888888889 66 9 UBE2W ubiquitin-conjugating enzyme E2W (putative) 2175 275 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1358.[MT7]-DNWSPALTISK[MT7].2y4_1.heavy 760.422 / 592.379 11917.0 31.236499786376953 43 13 10 10 10 0.816986011441015 68.58565056362511 0.0 3 0.9113588181471863 4.114178443738503 11917.0 35.887528641571194 0.0 - - - - - - - 654.7142857142857 23 7 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 2177 275 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1358.[MT7]-DNWSPALTISK[MT7].2y8_1.heavy 760.422 / 960.585 9778.0 31.236499786376953 43 13 10 10 10 0.816986011441015 68.58565056362511 0.0 3 0.9113588181471863 4.114178443738503 9778.0 59.434901960784316 0.0 - - - - - - - 306.0 19 4 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 2179 275 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1358.[MT7]-DNWSPALTISK[MT7].2b4_1.heavy 760.422 / 647.291 26278.0 31.236499786376953 43 13 10 10 10 0.816986011441015 68.58565056362511 0.0 3 0.9113588181471863 4.114178443738503 26278.0 65.64446421209131 0.0 - - - - - - - 306.0 52 2 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 2181 275 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1358.[MT7]-DNWSPALTISK[MT7].2y7_1.heavy 760.422 / 873.553 25972.0 31.236499786376953 43 13 10 10 10 0.816986011441015 68.58565056362511 0.0 3 0.9113588181471863 4.114178443738503 25972.0 101.87874783501186 0.0 - - - - - - - 306.0 51 6 UBE2E3;UBE2E1;UBE2E2 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 2183 276 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1000.[MT7]-FQPLDQVVVDNVFPNC[CAM]ILLLK[MT7].4y8_1.heavy 690.641 / 1114.68 2963.0 46.66420078277588 44 18 10 6 10 6.435578434368734 15.538618792361746 0.038799285888671875 3 0.9879749140916251 11.242997417290212 2963.0 33.62573729745063 0.0 - - - - - - - 158.33333333333334 5 3 RNASEH2B ribonuclease H2, subunit B 2185 276 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1000.[MT7]-FQPLDQVVVDNVFPNC[CAM]ILLLK[MT7].4b7_1.heavy 690.641 / 972.527 3792.0 46.66420078277588 44 18 10 6 10 6.435578434368734 15.538618792361746 0.038799285888671875 3 0.9879749140916251 11.242997417290212 3792.0 39.96709281465395 0.0 - - - - - - - 155.3846153846154 7 13 RNASEH2B ribonuclease H2, subunit B 2187 276 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1000.[MT7]-FQPLDQVVVDNVFPNC[CAM]ILLLK[MT7].4b5_1.heavy 690.641 / 745.4 4148.0 46.66420078277588 44 18 10 6 10 6.435578434368734 15.538618792361746 0.038799285888671875 3 0.9879749140916251 11.242997417290212 4148.0 24.50295358649789 0.0 - - - - - - - 237.23076923076923 8 13 RNASEH2B ribonuclease H2, subunit B 2189 276 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1000.[MT7]-FQPLDQVVVDNVFPNC[CAM]ILLLK[MT7].4b6_1.heavy 690.641 / 873.459 6281.0 46.66420078277588 44 18 10 6 10 6.435578434368734 15.538618792361746 0.038799285888671875 3 0.9879749140916251 11.242997417290212 6281.0 24.447451761247805 0.0 - - - - - - - 301.15384615384613 12 13 RNASEH2B ribonuclease H2, subunit B 2191 277 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1355.[MT7]-LRAEPVGTFLVR.3y6_1.heavy 501.304 / 692.409 148923.0 31.35949993133545 45 20 10 5 10 5.985788685524858 16.706236262871283 0.04900169372558594 3 0.9929481577933709 14.687758784556173 148923.0 488.3064262245624 0.0 - - - - - - - 307.0 297 3 SOCS1 suppressor of cytokine signaling 1 2193 277 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1355.[MT7]-LRAEPVGTFLVR.3b4_1.heavy 501.304 / 614.374 55884.0 31.35949993133545 45 20 10 5 10 5.985788685524858 16.706236262871283 0.04900169372558594 3 0.9929481577933709 14.687758784556173 55884.0 42.27426710097719 1.0 - - - - - - - 307.0 111 3 SOCS1 suppressor of cytokine signaling 1 2195 277 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1355.[MT7]-LRAEPVGTFLVR.3y4_1.heavy 501.304 / 534.34 63868.0 31.35949993133545 45 20 10 5 10 5.985788685524858 16.706236262871283 0.04900169372558594 3 0.9929481577933709 14.687758784556173 63868.0 86.33622149837133 0.0 - - - - - - - 833.2857142857143 127 7 SOCS1 suppressor of cytokine signaling 1 2197 277 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1355.[MT7]-LRAEPVGTFLVR.3y8_1.heavy 501.304 / 888.53 35312.0 31.35949993133545 45 20 10 5 10 5.985788685524858 16.706236262871283 0.04900169372558594 3 0.9929481577933709 14.687758784556173 35312.0 105.82097719869707 0.0 - - - - - - - 307.0 70 2 SOCS1 suppressor of cytokine signaling 1 2199 278 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1006.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGR.3y6_1.heavy 965.184 / 584.315 73576.0 44.76969909667969 48 18 10 10 10 3.095611456310536 26.465071095632915 0.0 3 0.9822922584113654 9.260572298325537 73576.0 73.8082730242746 0.0 - - - - - - - 749.0 147 2 VHL von Hippel-Lindau tumor suppressor 2201 278 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1006.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGR.3b5_1.heavy 965.184 / 652.451 36413.0 44.76969909667969 48 18 10 10 10 3.095611456310536 26.465071095632915 0.0 3 0.9822922584113654 9.260572298325537 36413.0 35.624438645778845 0.0 - - - - - - - 450.0 72 1 VHL von Hippel-Lindau tumor suppressor 2203 278 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1006.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGR.3y10_1.heavy 965.184 / 1058.56 5544.0 44.76969909667969 48 18 10 10 10 3.095611456310536 26.465071095632915 0.0 3 0.9822922584113654 9.260572298325537 5544.0 3.059550842633233 0.0 - - - - - - - 275.0 11 6 VHL von Hippel-Lindau tumor suppressor 2205 278 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1006.[MT7]-VVLPVWLNFDGEPQPYPTLPPGTGR.3y9_1.heavy 965.184 / 895.5 26373.0 44.76969909667969 48 18 10 10 10 3.095611456310536 26.465071095632915 0.0 3 0.9822922584113654 9.260572298325537 26373.0 27.865997800179127 0.0 - - - - - - - 674.0 52 4 VHL von Hippel-Lindau tumor suppressor 2207 279 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1352.[MT7]-NITC[CAM]ITC[CAM]TDVR.2y8_1.heavy 748.87 / 1024.45 26347.0 26.03660011291504 43 13 10 10 10 1.3188834987043885 53.14856111555528 0.0 3 0.9201012298944805 4.336679978654404 26347.0 57.19848709677419 0.0 - - - - - - - 310.0 52 4 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 2209 279 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1352.[MT7]-NITC[CAM]ITC[CAM]TDVR.2y9_1.heavy 748.87 / 1125.5 17978.0 26.03660011291504 43 13 10 10 10 1.3188834987043885 53.14856111555528 0.0 3 0.9201012298944805 4.336679978654404 17978.0 39.493606451612905 0.0 - - - - - - - 310.0 35 7 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 2211 279 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1352.[MT7]-NITC[CAM]ITC[CAM]TDVR.2y6_1.heavy 748.87 / 751.34 22628.0 26.03660011291504 43 13 10 10 10 1.3188834987043885 53.14856111555528 0.0 3 0.9201012298944805 4.336679978654404 22628.0 43.74399078341014 0.0 - - - - - - - 310.0 45 7 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 2213 279 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1352.[MT7]-NITC[CAM]ITC[CAM]TDVR.2y10_1.heavy 748.87 / 1238.59 9609.0 26.03660011291504 43 13 10 10 10 1.3188834987043885 53.14856111555528 0.0 3 0.9201012298944805 4.336679978654404 9609.0 39.107596774193546 0.0 - - - - - - - 310.0 19 6 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 2215 280 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1370.[MT7]-RILMDLDVVLK[MT7].3b5_1.heavy 535 / 773.446 25999.0 37.470001220703125 46 16 10 10 10 2.397821998605363 41.704513536935885 0.0 3 0.9692179869671441 7.016063029277883 25999.0 167.14710395209582 0.0 - - - - - - - 566.7 51 10 MAP2K7 mitogen-activated protein kinase kinase 7 2217 280 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1370.[MT7]-RILMDLDVVLK[MT7].3b3_1.heavy 535 / 527.379 6666.0 37.470001220703125 46 16 10 10 10 2.397821998605363 41.704513536935885 0.0 3 0.9692179869671441 7.016063029277883 6666.0 26.93973438023858 0.0 - - - - - - - 708.5 13 8 MAP2K7 mitogen-activated protein kinase kinase 7 2219 280 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1370.[MT7]-RILMDLDVVLK[MT7].3y5_1.heavy 535 / 717.463 13666.0 37.470001220703125 46 16 10 10 10 2.397821998605363 41.704513536935885 0.0 3 0.9692179869671441 7.016063029277883 13666.0 24.178206529608616 0.0 - - - - - - - 266.6 27 10 MAP2K7 mitogen-activated protein kinase kinase 7 2221 280 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1370.[MT7]-RILMDLDVVLK[MT7].3b7_1.heavy 535 / 1001.56 32499.0 37.470001220703125 46 16 10 10 10 2.397821998605363 41.704513536935885 0.0 3 0.9692179869671441 7.016063029277883 32499.0 193.08017220507995 0.0 - - - - - - - 167.0 64 1 MAP2K7 mitogen-activated protein kinase kinase 7 2223 281 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1371.[MT7]-TC[CAM]LSQLLDIMK[MT7].3y3_1.heavy 537.301 / 535.339 13855.0 41.95220184326172 48 18 10 10 10 17.501746349643234 5.713715534566552 0.0 3 0.989399231077521 11.975930953352357 13855.0 19.019591154769113 0.0 - - - - - - - 233.8 27 5 CCNH cyclin H 2225 281 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1371.[MT7]-TC[CAM]LSQLLDIMK[MT7].3b5_1.heavy 537.301 / 734.362 26207.0 41.95220184326172 48 18 10 10 10 17.501746349643234 5.713715534566552 0.0 3 0.989399231077521 11.975930953352357 26207.0 124.49632734530937 0.0 - - - - - - - 229.625 52 8 CCNH cyclin H 2227 281 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1371.[MT7]-TC[CAM]LSQLLDIMK[MT7].3b3_1.heavy 537.301 / 519.272 11518.0 41.95220184326172 48 18 10 10 10 17.501746349643234 5.713715534566552 0.0 3 0.989399231077521 11.975930953352357 11518.0 43.2212375249501 0.0 - - - - - - - 605.375 23 8 CCNH cyclin H 2229 281 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1371.[MT7]-TC[CAM]LSQLLDIMK[MT7].3y4_1.heavy 537.301 / 650.366 29212.0 41.95220184326172 48 18 10 10 10 17.501746349643234 5.713715534566552 0.0 3 0.989399231077521 11.975930953352357 29212.0 205.00876646706587 0.0 - - - - - - - 233.8 58 5 CCNH cyclin H 2231 282 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1372.[MT7]-FFIFALTPQQVR.2b3_1.heavy 805.962 / 552.33 22742.0 44.375925064086914 39 13 10 6 10 1.2652537287760628 51.52369628317951 0.03929901123046875 3 0.9028840984580512 3.927698532085502 22742.0 47.618043970724905 0.0 - - - - - - - 768.2857142857143 45 7 PIAS2 protein inhibitor of activated STAT, 2 2233 282 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1372.[MT7]-FFIFALTPQQVR.2y8_1.heavy 805.962 / 912.526 12600.0 44.375925064086914 39 13 10 6 10 1.2652537287760628 51.52369628317951 0.03929901123046875 3 0.9028840984580512 3.927698532085502 12600.0 119.33301747112822 0.0 - - - - - - - 211.375 25 8 PIAS2 protein inhibitor of activated STAT, 2 2235 282 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1372.[MT7]-FFIFALTPQQVR.2y5_1.heavy 805.962 / 627.357 12446.0 44.375925064086914 39 13 10 6 10 1.2652537287760628 51.52369628317951 0.03929901123046875 3 0.9028840984580512 3.927698532085502 12446.0 26.187895878524944 1.0 - - - - - - - 326.5 24 8 PIAS2 protein inhibitor of activated STAT, 2 2237 282 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1372.[MT7]-FFIFALTPQQVR.2y9_1.heavy 805.962 / 1059.59 16595.0 44.375925064086914 39 13 10 6 10 1.2652537287760628 51.52369628317951 0.03929901123046875 3 0.9028840984580512 3.927698532085502 16595.0 75.90605121686396 0.0 - - - - - - - 230.58333333333334 33 12 PIAS2 protein inhibitor of activated STAT, 2 2239 283 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1140.[MT7]-EDFGFK[MT7].2b3_1.heavy 515.776 / 536.247 12598.0 27.790300369262695 50 20 10 10 10 17.889224989181994 5.589957086484864 0.0 3 0.9983001237670608 29.928998129316657 12598.0 42.4513748488136 0.0 - - - - - - - 332.0 25 4 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2241 283 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1140.[MT7]-EDFGFK[MT7].2y4_1.heavy 515.776 / 642.373 65642.0 27.790300369262695 50 20 10 10 10 17.889224989181994 5.589957086484864 0.0 3 0.9983001237670608 29.928998129316657 65642.0 52.03846617837139 0.0 - - - - - - - 332.0 131 2 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2243 283 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1140.[MT7]-EDFGFK[MT7].2y5_1.heavy 515.776 / 757.4 38457.0 27.790300369262695 50 20 10 10 10 17.889224989181994 5.589957086484864 0.0 3 0.9983001237670608 29.928998129316657 38457.0 21.14343654338413 0.0 - - - - - - - 332.0 76 4 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2245 283 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1140.[MT7]-EDFGFK[MT7].2b4_1.heavy 515.776 / 593.269 12929.0 27.790300369262695 50 20 10 10 10 17.889224989181994 5.589957086484864 0.0 3 0.9983001237670608 29.928998129316657 12929.0 26.64449775271531 0.0 - - - - - - - 332.0 25 4 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2247 284 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A807.[MT7]-NTNQIVAIK[MT7].2y4_1.heavy 644.895 / 574.404 34990.0 24.568699836730957 39 14 10 5 10 1.491838832289211 46.60665263769833 0.04220008850097656 3 0.9346879346676247 4.802563490733511 34990.0 51.12399255998696 0.0 - - - - - - - 278.0 69 4 CDK7 cyclin-dependent kinase 7 2249 284 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A807.[MT7]-NTNQIVAIK[MT7].2y5_1.heavy 644.895 / 687.489 19161.0 24.568699836730957 39 14 10 5 10 1.491838832289211 46.60665263769833 0.04220008850097656 3 0.9346879346676247 4.802563490733511 19161.0 33.123457382953184 0.0 - - - - - - - 666.2 38 10 CDK7 cyclin-dependent kinase 7 2251 284 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A807.[MT7]-NTNQIVAIK[MT7].2b4_1.heavy 644.895 / 602.302 25826.0 24.568699836730957 39 14 10 5 10 1.491838832289211 46.60665263769833 0.04220008850097656 3 0.9346879346676247 4.802563490733511 25826.0 29.230144403440388 0.0 - - - - - - - 694.0 51 8 CDK7 cyclin-dependent kinase 7 2253 284 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A807.[MT7]-NTNQIVAIK[MT7].2b5_1.heavy 644.895 / 715.385 19439.0 24.568699836730957 39 14 10 5 10 1.491838832289211 46.60665263769833 0.04220008850097656 3 0.9346879346676247 4.802563490733511 19439.0 13.801680672268906 1.0 - - - - - - - 278.0 38 5 CDK7 cyclin-dependent kinase 7 2255 285 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A806.[MT7]-QQEQPAATK[MT7].3y3_1.heavy 430.241 / 463.3 3350.0 18.507699966430664 29 3 10 10 6 0.37182820982421094 119.82588813759278 0.0 6 0.5691943957604476 1.8081242946910978 3350.0 2.6674701423452793 2.0 - - - - - - - 279.4 38 5 RFC5 replication factor C (activator 1) 5, 36.5kDa 2257 285 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A806.[MT7]-QQEQPAATK[MT7].3b4_1.heavy 430.241 / 658.328 838.0 18.507699966430664 29 3 10 10 6 0.37182820982421094 119.82588813759278 0.0 6 0.5691943957604476 1.8081242946910978 838.0 3.0936917562724013 2.0 - - - - - - - 251.4 29 15 RFC5 replication factor C (activator 1) 5, 36.5kDa 2259 285 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A806.[MT7]-QQEQPAATK[MT7].3y4_1.heavy 430.241 / 534.337 11725.0 18.507699966430664 29 3 10 10 6 0.37182820982421094 119.82588813759278 0.0 6 0.5691943957604476 1.8081242946910978 11725.0 7.652173260204176 1.0 - - - - - - - 259.42857142857144 48 7 RFC5 replication factor C (activator 1) 5, 36.5kDa 2261 285 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A806.[MT7]-QQEQPAATK[MT7].3b3_1.heavy 430.241 / 530.269 43830.0 18.507699966430664 29 3 10 10 6 0.37182820982421094 119.82588813759278 0.0 6 0.5691943957604476 1.8081242946910978 43830.0 8.524496725856881 0.0 - - - - - - - 628.0 87 4 RFC5 replication factor C (activator 1) 5, 36.5kDa 2263 286 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1141.[MT7]-AAADTLAVR.2y8_1.heavy 516.302 / 816.457 46149.0 22.40019989013672 48 18 10 10 10 7.388983492004406 13.533661309192212 0.0 3 0.9842371334871721 9.816860913846867 46149.0 221.60709909145834 0.0 - - - - - - - 290.0 92 4 E2F5 E2F transcription factor 5, p130-binding 2265 286 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1141.[MT7]-AAADTLAVR.2y5_1.heavy 516.302 / 559.356 58208.0 22.40019989013672 48 18 10 10 10 7.388983492004406 13.533661309192212 0.0 3 0.9842371334871721 9.816860913846867 58208.0 78.2523076923077 0.0 - - - - - - - 1246.625 116 8 E2F5 E2F transcription factor 5, p130-binding 2267 286 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1141.[MT7]-AAADTLAVR.2b5_1.heavy 516.302 / 574.295 12059.0 22.40019989013672 48 18 10 10 10 7.388983492004406 13.533661309192212 0.0 3 0.9842371334871721 9.816860913846867 12059.0 14.865836206896551 1.0 - - - - - - - 331.42857142857144 117 7 E2F5 E2F transcription factor 5, p130-binding 2269 286 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1141.[MT7]-AAADTLAVR.2y7_1.heavy 516.302 / 745.42 26437.0 22.40019989013672 48 18 10 10 10 7.388983492004406 13.533661309192212 0.0 3 0.9842371334871721 9.816860913846867 26437.0 113.95258620689656 0.0 - - - - - - - 255.2 52 10 E2F5 E2F transcription factor 5, p130-binding 2271 287 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A805.[MT7]-EAAEVLQNNR.2y9_1.heavy 644.342 / 1014.53 9040.0 21.914100646972656 41 13 10 10 8 1.5273181710633281 55.160575842929326 0.0 4 0.921797267976944 4.3840922136540925 9040.0 44.266666666666666 0.0 - - - - - - - 339.0 18 12 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2273 287 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A805.[MT7]-EAAEVLQNNR.2b4_1.heavy 644.342 / 545.269 7910.0 21.914100646972656 41 13 10 10 8 1.5273181710633281 55.160575842929326 0.0 4 0.921797267976944 4.3840922136540925 7910.0 6.933333333333334 1.0 - - - - - - - 778.4444444444445 15 9 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2275 287 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A805.[MT7]-EAAEVLQNNR.2y6_1.heavy 644.342 / 743.416 5424.0 21.914100646972656 41 13 10 10 8 1.5273181710633281 55.160575842929326 0.0 4 0.921797267976944 4.3840922136540925 5424.0 22.439999999999998 1.0 - - - - - - - 376.6666666666667 11 9 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2277 287 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A805.[MT7]-EAAEVLQNNR.2y7_1.heavy 644.342 / 872.458 5424.0 21.914100646972656 41 13 10 10 8 1.5273181710633281 55.160575842929326 0.0 4 0.921797267976944 4.3840922136540925 5424.0 27.36 0.0 - - - - - - - 312.9230769230769 10 13 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2279 288 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A804.[MT7]-LQNLSLEGLR.2y8_1.heavy 643.881 / 901.51 34000.0 33.317100524902344 48 18 10 10 10 4.4785861019757425 22.32847548825391 0.0 3 0.98099631587888 8.938266374843524 34000.0 80.92 0.0 - - - - - - - 250.0 68 4 SKP2 S-phase kinase-associated protein 2 (p45) 2281 288 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A804.[MT7]-LQNLSLEGLR.2y9_1.heavy 643.881 / 1029.57 70501.0 33.317100524902344 48 18 10 10 10 4.4785861019757425 22.32847548825391 0.0 3 0.98099631587888 8.938266374843524 70501.0 40.76758204804045 0.0 - - - - - - - 250.0 141 2 SKP2 S-phase kinase-associated protein 2 (p45) 2283 288 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A804.[MT7]-LQNLSLEGLR.2y6_1.heavy 643.881 / 674.383 33500.0 33.317100524902344 48 18 10 10 10 4.4785861019757425 22.32847548825391 0.0 3 0.98099631587888 8.938266374843524 33500.0 72.84727272727272 0.0 - - - - - - - 571.4285714285714 67 7 SKP2 S-phase kinase-associated protein 2 (p45) 2285 288 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A804.[MT7]-LQNLSLEGLR.2y7_1.heavy 643.881 / 787.467 18250.0 33.317100524902344 48 18 10 10 10 4.4785861019757425 22.32847548825391 0.0 3 0.98099631587888 8.938266374843524 18250.0 26.444250000000004 0.0 - - - - - - - 571.4285714285714 36 7 SKP2 S-phase kinase-associated protein 2 (p45) 2287 289 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1273.[MT7]-DVAYQYVK[MT7].2y5_1.heavy 637.355 / 844.469 40256.0 25.015100479125977 50 20 10 10 10 6.342696785013675 15.766164360288652 0.0 3 0.9901528679994618 12.42654695560577 40256.0 69.06343656614494 0.0 - - - - - - - 286.0 80 2 SSBP1 single-stranded DNA binding protein 1 2289 289 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1273.[MT7]-DVAYQYVK[MT7].2y3_1.heavy 637.355 / 553.347 36830.0 25.015100479125977 50 20 10 10 10 6.342696785013675 15.766164360288652 0.0 3 0.9901528679994618 12.42654695560577 36830.0 71.78638879976785 0.0 - - - - - - - 749.75 73 8 SSBP1 single-stranded DNA binding protein 1 2291 289 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1273.[MT7]-DVAYQYVK[MT7].2y6_1.heavy 637.355 / 915.506 25981.0 25.015100479125977 50 20 10 10 10 6.342696785013675 15.766164360288652 0.0 3 0.9901528679994618 12.42654695560577 25981.0 17.630098039215685 1.0 - - - - - - - 286.0 51 3 SSBP1 single-stranded DNA binding protein 1 2293 289 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1273.[MT7]-DVAYQYVK[MT7].2b5_1.heavy 637.355 / 721.364 24554.0 25.015100479125977 50 20 10 10 10 6.342696785013675 15.766164360288652 0.0 3 0.9901528679994618 12.42654695560577 24554.0 50.24815949130432 0.0 - - - - - - - 693.5714285714286 49 7 SSBP1 single-stranded DNA binding protein 1 2295 290 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A802.[MT7]-LGAFQAQEK[MT7].2y4_1.heavy 640.366 / 619.353 19465.0 25.387699127197266 47 17 10 10 10 8.43674447452776 11.852913206263416 0.0 3 0.9765177731456397 8.03783704795399 19465.0 17.35251937984496 0.0 - - - - - - - 295.0 38 4 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2297 290 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A802.[MT7]-LGAFQAQEK[MT7].2y8_1.heavy 640.366 / 1022.54 24479.0 25.387699127197266 47 17 10 10 10 8.43674447452776 11.852913206263416 0.0 3 0.9765177731456397 8.03783704795399 24479.0 42.043028248587575 0.0 - - - - - - - 295.0 48 6 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2299 290 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A802.[MT7]-LGAFQAQEK[MT7].2y6_1.heavy 640.366 / 894.48 14451.0 25.387699127197266 47 17 10 10 10 8.43674447452776 11.852913206263416 0.0 3 0.9765177731456397 8.03783704795399 14451.0 28.901999999999997 0.0 - - - - - - - 295.0 28 3 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2301 290 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A802.[MT7]-LGAFQAQEK[MT7].2b5_1.heavy 640.366 / 661.379 15041.0 25.387699127197266 47 17 10 10 10 8.43674447452776 11.852913206263416 0.0 3 0.9765177731456397 8.03783704795399 15041.0 29.776081355932206 0.0 - - - - - - - 295.0 30 3 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2303 291 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1137.[MT7]-VGQDPVLR.2b4_1.heavy 514.304 / 544.285 303730.0 23.023500442504883 48 18 10 10 10 8.48515635728251 11.785286656995252 0.0 3 0.9893102509942366 11.92589497258713 303730.0 324.7526342975207 0.0 - - - - - - - 484.0 607 1 SSBP1 single-stranded DNA binding protein 1 2305 291 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1137.[MT7]-VGQDPVLR.2b6_1.heavy 514.304 / 740.406 23960.0 23.023500442504883 48 18 10 10 10 8.48515635728251 11.785286656995252 0.0 3 0.9893102509942366 11.92589497258713 23960.0 93.23749704840615 0.0 - - - - - - - 282.3333333333333 47 6 SSBP1 single-stranded DNA binding protein 1 2307 291 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1137.[MT7]-VGQDPVLR.2b5_1.heavy 514.304 / 641.338 9439.0 23.023500442504883 48 18 10 10 10 8.48515635728251 11.785286656995252 0.0 3 0.9893102509942366 11.92589497258713 9439.0 28.34300275482094 0.0 - - - - - - - 372.3076923076923 18 13 SSBP1 single-stranded DNA binding protein 1 2309 291 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1137.[MT7]-VGQDPVLR.2y7_1.heavy 514.304 / 784.431 103341.0 23.023500442504883 48 18 10 10 10 8.48515635728251 11.785286656995252 0.0 3 0.9893102509942366 11.92589497258713 103341.0 184.26298140495868 0.0 - - - - - - - 795.1428571428571 206 7 SSBP1 single-stranded DNA binding protein 1 2311 292 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1265.[MT7]-ETSPLTAEK[MT7].2y4_1.heavy 632.355 / 592.342 17978.0 21.704825401306152 41 18 10 3 10 4.676407090734095 21.383938151608216 0.07130050659179688 3 0.9874788307744741 11.017567682303737 17978.0 10.643346203346203 0.0 - - - - - - - 222.0 35 4 CCND2 cyclin D2 2313 292 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1265.[MT7]-ETSPLTAEK[MT7].2y8_1.heavy 632.355 / 990.559 28631.0 21.704825401306152 41 18 10 3 10 4.676407090734095 21.383938151608216 0.07130050659179688 3 0.9874788307744741 11.017567682303737 28631.0 50.00893841379197 0.0 - - - - - - - 697.7142857142857 57 7 CCND2 cyclin D2 2315 292 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1265.[MT7]-ETSPLTAEK[MT7].2y6_1.heavy 632.355 / 802.479 55930.0 21.704825401306152 41 18 10 3 10 4.676407090734095 21.383938151608216 0.07130050659179688 3 0.9874788307744741 11.017567682303737 55930.0 80.61981981981981 0.0 - - - - - - - 333.0 111 4 CCND2 cyclin D2 2317 292 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1265.[MT7]-ETSPLTAEK[MT7].2y7_1.heavy 632.355 / 889.511 14426.0 21.704825401306152 41 18 10 3 10 4.676407090734095 21.383938151608216 0.07130050659179688 3 0.9874788307744741 11.017567682303737 14426.0 31.191351351351354 1.0 - - - - - - - 277.5 36 8 CCND2 cyclin D2 2319 293 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10639.[MT7]-LIELK[MT7].2b3_1.heavy 452.309 / 500.32 24333.0 29.865699768066406 45 15 10 10 10 1.993213543372357 40.00290570107983 0.0 3 0.9566881012410278 5.908519193978378 24333.0 25.187804262651717 0.0 - - - - - - - 333.0 48 1 COPB1;E2F4;TSC2 coatomer protein complex, subunit beta 1;E2F transcription factor 4, p107/p130-binding;tuberous sclerosis 2 2321 293 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10639.[MT7]-LIELK[MT7].2y4_1.heavy 452.309 / 646.426 60667.0 29.865699768066406 45 15 10 10 10 1.993213543372357 40.00290570107983 0.0 3 0.9566881012410278 5.908519193978378 60667.0 47.53990813310904 0.0 - - - - - - - 1095.142857142857 121 7 COPB1;E2F4;TSC2 coatomer protein complex, subunit beta 1;E2F transcription factor 4, p107/p130-binding;tuberous sclerosis 2 2323 293 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10639.[MT7]-LIELK[MT7].2y3_1.heavy 452.309 / 533.341 42333.0 29.865699768066406 45 15 10 10 10 1.993213543372357 40.00290570107983 0.0 3 0.9566881012410278 5.908519193978378 42333.0 38.01566222657014 0.0 - - - - - - - 333.0 84 4 COPB1;E2F4;TSC2 coatomer protein complex, subunit beta 1;E2F transcription factor 4, p107/p130-binding;tuberous sclerosis 2 2325 293 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10639.[MT7]-LIELK[MT7].2y1_1.heavy 452.309 / 291.215 36667.0 29.865699768066406 45 15 10 10 10 1.993213543372357 40.00290570107983 0.0 3 0.9566881012410278 5.908519193978378 36667.0 12.532592797183726 1.0 - - - - - - - 667.0 73 1 COPB1;E2F4;TSC2 coatomer protein complex, subunit beta 1;E2F transcription factor 4, p107/p130-binding;tuberous sclerosis 2 2327 294 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1267.[MT7]-ILGEEQYNR.2y4_1.heavy 633.334 / 580.284 10940.0 24.761199951171875 46 20 10 10 6 27.293769259545996 3.663839869424594 0.0 5 0.9985509915861547 32.41712240110981 10940.0 9.176745686360478 2.0 - - - - - - - 666.375 58 8 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 2329 294 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1267.[MT7]-ILGEEQYNR.2y8_1.heavy 633.334 / 1008.47 49088.0 24.761199951171875 46 20 10 10 6 27.293769259545996 3.663839869424594 0.0 5 0.9985509915861547 32.41712240110981 49088.0 90.56342245989305 0.0 - - - - - - - 281.0 98 5 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 2331 294 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1267.[MT7]-ILGEEQYNR.2y5_1.heavy 633.334 / 709.326 8696.0 24.761199951171875 46 20 10 10 6 27.293769259545996 3.663839869424594 0.0 5 0.9985509915861547 32.41712240110981 8696.0 23.968943479788805 0.0 - - - - - - - 641.2857142857143 17 7 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 2333 294 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1267.[MT7]-ILGEEQYNR.2y7_1.heavy 633.334 / 895.39 22440.0 24.761199951171875 46 20 10 10 6 27.293769259545996 3.663839869424594 0.0 5 0.9985509915861547 32.41712240110981 22440.0 38.91749802058591 0.0 - - - - - - - 281.0 44 1 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 2335 295 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1269.[MT7]-RLEALFTK[MT7].2b3_1.heavy 633.395 / 543.337 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2337 295 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1269.[MT7]-RLEALFTK[MT7].2b4_1.heavy 633.395 / 614.374 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2339 295 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1269.[MT7]-RLEALFTK[MT7].2y3_1.heavy 633.395 / 539.331 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2341 295 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1269.[MT7]-RLEALFTK[MT7].2b7_1.heavy 633.395 / 975.574 N/A N/A - - - - - - - - - 0.0 - - - - - - - BRCA2 breast cancer 2, early onset 2343 296 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1132.[MT7]-LGNPEIAR.2y5_1.heavy 507.297 / 585.336 41438.0 22.882400512695312 48 18 10 10 10 5.581698150142504 17.915694706179504 0.0 3 0.9855151863023999 10.24189436791961 41438.0 66.42592811261636 0.0 - - - - - - - 889.7142857142857 82 7 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 2345 296 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1132.[MT7]-LGNPEIAR.2y6_1.heavy 507.297 / 699.378 7425.0 22.882400512695312 48 18 10 10 10 5.581698150142504 17.915694706179504 0.0 3 0.9855151863023999 10.24189436791961 7425.0 21.489750320121022 0.0 - - - - - - - 359.5 14 10 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 2347 296 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1132.[MT7]-LGNPEIAR.2b5_1.heavy 507.297 / 655.353 20360.0 22.882400512695312 48 18 10 10 10 5.581698150142504 17.915694706179504 0.0 3 0.9855151863023999 10.24189436791961 20360.0 43.90333942119797 1.0 - - - - - - - 407.3 40 10 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 2349 296 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1132.[MT7]-LGNPEIAR.2y7_1.heavy 507.297 / 756.4 60360.0 22.882400512695312 48 18 10 10 10 5.581698150142504 17.915694706179504 0.0 3 0.9855151863023999 10.24189436791961 60360.0 123.58719144796265 0.0 - - - - - - - 838.5 120 8 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 2351 297 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1268.[MT7]-SDTVLFPAK[MT7].2y4_1.heavy 633.371 / 606.373 67333.0 28.9906005859375 45 15 10 10 10 1.9448178485591372 35.33218226487133 0.0 3 0.9564380817488474 5.891414363204761 67333.0 77.9560227954409 0.0 - - - - - - - 667.0 134 1 DBF4 DBF4 homolog (S. cerevisiae) 2353 297 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1268.[MT7]-SDTVLFPAK[MT7].2y5_1.heavy 633.371 / 719.457 44000.0 28.9906005859375 45 15 10 10 10 1.9448178485591372 35.33218226487133 0.0 3 0.9564380817488474 5.891414363204761 44000.0 42.82523227160356 0.0 - - - - - - - 333.0 88 1 DBF4 DBF4 homolog (S. cerevisiae) 2355 297 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1268.[MT7]-SDTVLFPAK[MT7].2b4_1.heavy 633.371 / 547.284 55333.0 28.9906005859375 45 15 10 10 10 1.9448178485591372 35.33218226487133 0.0 3 0.9564380817488474 5.891414363204761 55333.0 31.01185745872443 1.0 - - - - - - - 667.0 116 2 DBF4 DBF4 homolog (S. cerevisiae) 2357 297 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1268.[MT7]-SDTVLFPAK[MT7].2b5_1.heavy 633.371 / 660.369 59667.0 28.9906005859375 45 15 10 10 10 1.9448178485591372 35.33218226487133 0.0 3 0.9564380817488474 5.891414363204761 59667.0 73.65517391972993 0.0 - - - - - - - 333.0 119 2 DBF4 DBF4 homolog (S. cerevisiae) 2359 298 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1135.[MT7]-C[CAM]IENVSR.2b3_1.heavy 511.264 / 547.267 11763.0 18.73699951171875 48 18 10 10 10 4.431402412695169 22.566219604321656 0.0 3 0.9816500043552144 9.096577689686098 11763.0 31.332611902977575 0.0 - - - - - - - 265.14285714285717 23 7 RCHY1 ring finger and CHY zinc finger domain containing 1 2361 298 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1135.[MT7]-C[CAM]IENVSR.2y5_1.heavy 511.264 / 604.305 15890.0 18.73699951171875 48 18 10 10 10 4.431402412695169 22.566219604321656 0.0 3 0.9816500043552144 9.096577689686098 15890.0 58.500624298348896 0.0 - - - - - - - 367.0 31 9 RCHY1 ring finger and CHY zinc finger domain containing 1 2363 298 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1135.[MT7]-C[CAM]IENVSR.2b4_1.heavy 511.264 / 661.31 18779.0 18.73699951171875 48 18 10 10 10 4.431402412695169 22.566219604321656 0.0 3 0.9816500043552144 9.096577689686098 18779.0 91.85334546272043 0.0 - - - - - - - 330.2 37 5 RCHY1 ring finger and CHY zinc finger domain containing 1 2365 298 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1135.[MT7]-C[CAM]IENVSR.2y6_1.heavy 511.264 / 717.389 34050.0 18.73699951171875 48 18 10 10 10 4.431402412695169 22.566219604321656 0.0 3 0.9816500043552144 9.096577689686098 34050.0 94.20611691791458 0.0 - - - - - - - 294.7142857142857 68 7 RCHY1 ring finger and CHY zinc finger domain containing 1 2367 299 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1134.[MT7]-GAEPSGGAAR.2y6_1.heavy 508.766 / 518.268 4574.0 13.131099939346313 45 20 10 5 10 15.81402251766154 6.323501809126502 0.04440021514892578 3 0.9977653640785457 26.102257793913296 4574.0 -0.7234181704442567 1.0 - - - - - - - 179.92307692307693 9 13 UBE2C ubiquitin-conjugating enzyme E2C 2369 299 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1134.[MT7]-GAEPSGGAAR.2b7_1.heavy 508.766 / 700.338 4894.0 13.131099939346313 45 20 10 5 10 15.81402251766154 6.323501809126502 0.04440021514892578 3 0.9977653640785457 26.102257793913296 4894.0 21.18999595484132 0.0 - - - - - - - 189.85714285714286 9 14 UBE2C ubiquitin-conjugating enzyme E2C 2371 299 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1134.[MT7]-GAEPSGGAAR.2y9_1.heavy 508.766 / 815.401 7128.0 13.131099939346313 45 20 10 5 10 15.81402251766154 6.323501809126502 0.04440021514892578 3 0.9977653640785457 26.102257793913296 7128.0 41.68743931931198 0.0 - - - - - - - 212.6875 14 16 UBE2C ubiquitin-conjugating enzyme E2C 2373 299 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1134.[MT7]-GAEPSGGAAR.2y7_1.heavy 508.766 / 615.321 49681.0 13.131099939346313 45 20 10 5 10 15.81402251766154 6.323501809126502 0.04440021514892578 3 0.9977653640785457 26.102257793913296 49681.0 208.54085967559746 0.0 - - - - - - - 177.16666666666666 99 6 UBE2C ubiquitin-conjugating enzyme E2C 2375 300 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1368.[MT7]-ENLEPNAEFDK[MT7].3y3_1.heavy 531.938 / 553.31 64657.0 25.47170066833496 47 17 10 10 10 2.1461444902337563 36.82723234689742 0.0 3 0.9762847676460882 7.998096479169046 64657.0 240.46692770131307 0.0 - - - - - - - 294.0 129 8 DBF4 DBF4 homolog (S. cerevisiae) 2377 300 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1368.[MT7]-ENLEPNAEFDK[MT7].3b4_1.heavy 531.938 / 630.321 89050.0 25.47170066833496 47 17 10 10 10 2.1461444902337563 36.82723234689742 0.0 3 0.9762847676460882 7.998096479169046 89050.0 130.58650141472518 0.0 - - - - - - - 294.0 178 4 DBF4 DBF4 homolog (S. cerevisiae) 2379 300 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1368.[MT7]-ENLEPNAEFDK[MT7].3y4_1.heavy 531.938 / 682.353 15576.0 25.47170066833496 47 17 10 10 10 2.1461444902337563 36.82723234689742 0.0 3 0.9762847676460882 7.998096479169046 15576.0 30.428366255593147 0.0 - - - - - - - 294.0 31 2 DBF4 DBF4 homolog (S. cerevisiae) 2381 300 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1368.[MT7]-ENLEPNAEFDK[MT7].3b3_1.heavy 531.938 / 501.279 41145.0 25.47170066833496 47 17 10 10 10 2.1461444902337563 36.82723234689742 0.0 3 0.9762847676460882 7.998096479169046 41145.0 54.12503762566974 0.0 - - - - - - - 721.6363636363636 82 11 DBF4 DBF4 homolog (S. cerevisiae) 2383 301 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A946.[MT7]-LPWESMPSLQALPVTR.3y7_1.heavy 657.028 / 784.468 9573.0 41.36652660369873 44 18 10 6 10 4.368679731457749 22.89021080669418 0.036701202392578125 3 0.9868670502113496 10.757337193909661 9573.0 21.8397012987013 0.0 - - - - - - - 316.25 19 12 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2385 301 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A946.[MT7]-LPWESMPSLQALPVTR.3y6_1.heavy 657.028 / 656.409 17166.0 41.36652660369873 44 18 10 6 10 4.368679731457749 22.89021080669418 0.036701202392578125 3 0.9868670502113496 10.757337193909661 17166.0 18.779385213012862 0.0 - - - - - - - 825.0 34 7 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2387 301 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A946.[MT7]-LPWESMPSLQALPVTR.3b5_1.heavy 657.028 / 757.4 9078.0 41.36652660369873 44 18 10 6 10 4.368679731457749 22.89021080669418 0.036701202392578125 3 0.9868670502113496 10.757337193909661 9078.0 16.494450909090908 0.0 - - - - - - - 848.5714285714286 18 7 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2389 301 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A946.[MT7]-LPWESMPSLQALPVTR.3y9_1.heavy 657.028 / 984.584 4622.0 41.36652660369873 44 18 10 6 10 4.368679731457749 22.89021080669418 0.036701202392578125 3 0.9868670502113496 10.757337193909661 4622.0 32.354 0.0 - - - - - - - 255.0 9 11 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2391 302 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1367.[MT7]-LNEIVGNEDTVSR.2b3_1.heavy 795.416 / 501.279 33357.0 27.548200607299805 42 12 10 10 10 1.0948728801170484 53.56758240231363 0.0 3 0.8945956049131675 3.7674054627473024 33357.0 107.62994580551923 0.0 - - - - - - - 330.0 66 3 RFC2 replication factor C (activator 1) 2, 40kDa 2393 302 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1367.[MT7]-LNEIVGNEDTVSR.2y8_1.heavy 795.416 / 877.401 38972.0 27.548200607299805 42 12 10 10 10 1.0948728801170484 53.56758240231363 0.0 3 0.8945956049131675 3.7674054627473024 38972.0 92.58371827537093 0.0 - - - - - - - 330.0 77 7 RFC2 replication factor C (activator 1) 2, 40kDa 2395 302 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1367.[MT7]-LNEIVGNEDTVSR.2y9_1.heavy 795.416 / 976.469 45577.0 27.548200607299805 42 12 10 10 10 1.0948728801170484 53.56758240231363 0.0 3 0.8945956049131675 3.7674054627473024 45577.0 54.079553603876434 0.0 - - - - - - - 330.0 91 1 RFC2 replication factor C (activator 1) 2, 40kDa 2397 302 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1367.[MT7]-LNEIVGNEDTVSR.2y10_1.heavy 795.416 / 1089.55 9248.0 27.548200607299805 42 12 10 10 10 1.0948728801170484 53.56758240231363 0.0 3 0.8945956049131675 3.7674054627473024 9248.0 8.205679893314207 1.0 - - - - - - - 330.0 19 3 RFC2 replication factor C (activator 1) 2, 40kDa 2399 303 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1369.[MT7]-VDLVDENFTELR.2y8_1.heavy 797.416 / 1023.47 49717.0 35.128299713134766 46 16 10 10 10 3.12384359793099 27.49366671591609 0.0 3 0.9615345867848727 6.2722756526206185 49717.0 154.25017948717948 0.0 - - - - - - - 281.6666666666667 99 9 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2401 303 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1369.[MT7]-VDLVDENFTELR.2y9_1.heavy 797.416 / 1122.54 24566.0 35.128299713134766 46 16 10 10 10 3.12384359793099 27.49366671591609 0.0 3 0.9615345867848727 6.2722756526206185 24566.0 62.98974358974358 0.0 - - - - - - - 807.8571428571429 49 7 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2403 303 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1369.[MT7]-VDLVDENFTELR.2y10_1.heavy 797.416 / 1235.63 16377.0 35.128299713134766 46 16 10 10 10 3.12384359793099 27.49366671591609 0.0 3 0.9615345867848727 6.2722756526206185 16377.0 66.34784615384615 0.0 - - - - - - - 278.57142857142856 32 7 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2405 303 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1369.[MT7]-VDLVDENFTELR.2y7_1.heavy 797.416 / 908.447 38799.0 35.128299713134766 46 16 10 10 10 3.12384359793099 27.49366671591609 0.0 3 0.9615345867848727 6.2722756526206185 38799.0 220.85584615384613 0.0 - - - - - - - 752.1428571428571 77 7 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2407 304 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A945.[MT7]-HEVTILGGLNEFVVK[MT7].2y8_1.heavy 972.064 / 1049.61 1157.0 37.609500885009766 43 13 10 10 10 1.4768365323135 45.903778481491514 0.0 3 0.9035396236014432 3.941245108254984 1157.0 5.60122310720498 0.0 - - - - - - - 283.42857142857144 2 7 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 2409 304 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A945.[MT7]-HEVTILGGLNEFVVK[MT7].2y10_1.heavy 972.064 / 1219.72 2645.0 37.609500885009766 43 13 10 10 10 1.4768365323135 45.903778481491514 0.0 3 0.9035396236014432 3.941245108254984 2645.0 24.526363636363637 0.0 - - - - - - - 248.0 5 10 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 2411 304 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A945.[MT7]-HEVTILGGLNEFVVK[MT7].2y9_1.heavy 972.064 / 1106.63 3967.0 37.609500885009766 43 13 10 10 10 1.4768365323135 45.903778481491514 0.0 3 0.9035396236014432 3.941245108254984 3967.0 1.4210653753026634 1.0 - - - - - - - 227.125 7 8 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 2413 304 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A945.[MT7]-HEVTILGGLNEFVVK[MT7].2b6_1.heavy 972.064 / 837.495 4297.0 37.609500885009766 43 13 10 10 10 1.4768365323135 45.903778481491514 0.0 3 0.9035396236014432 3.941245108254984 4297.0 30.459135386119257 0.0 - - - - - - - 317.9230769230769 8 13 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) 2415 305 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1366.[MT7]-YDYILATASADSR.2b3_1.heavy 795.4 / 586.263 32986.0 32.68899917602539 46 16 10 10 10 2.33897700004613 38.06689839143922 0.0 3 0.9650405327006817 6.581222186056751 32986.0 48.00862513426423 0.0 - - - - - - - 266.0 65 3 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 2417 305 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1366.[MT7]-YDYILATASADSR.2y8_1.heavy 795.4 / 778.369 25804.0 32.68899917602539 46 16 10 10 10 2.33897700004613 38.06689839143922 0.0 3 0.9650405327006817 6.581222186056751 25804.0 20.436250626566416 0.0 - - - - - - - 266.0 51 1 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 2419 305 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1366.[MT7]-YDYILATASADSR.2b4_1.heavy 795.4 / 699.347 31922.0 32.68899917602539 46 16 10 10 10 2.33897700004613 38.06689839143922 0.0 3 0.9650405327006817 6.581222186056751 31922.0 18.801177944862154 0.0 - - - - - - - 266.0 63 1 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 2421 305 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1366.[MT7]-YDYILATASADSR.2y9_1.heavy 795.4 / 891.453 29262.0 32.68899917602539 46 16 10 10 10 2.33897700004613 38.06689839143922 0.0 3 0.9650405327006817 6.581222186056751 29262.0 41.582842105263154 0.0 - - - - - - - 266.0 58 4 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 2423 306 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A948.[MT7]-GLLLPSSEEPGPAQEASR.2b3_1.heavy 991.519 / 428.299 46664.0 29.840399742126465 34 11 10 3 10 0.753970902352698 87.19873046837017 0.05060005187988281 3 0.8621492146004572 3.285017282082344 46664.0 36.873136407265235 0.0 - - - - - - - 326.0 93 5 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2425 306 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A948.[MT7]-GLLLPSSEEPGPAQEASR.2b4_1.heavy 991.519 / 541.383 45032.0 29.840399742126465 34 11 10 3 10 0.753970902352698 87.19873046837017 0.05060005187988281 3 0.8621492146004572 3.285017282082344 45032.0 81.24484701317243 0.0 - - - - - - - 326.0 90 3 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2427 306 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A948.[MT7]-GLLLPSSEEPGPAQEASR.2y9_1.heavy 991.519 / 912.453 11095.0 29.840399742126465 34 11 10 3 10 0.753970902352698 87.19873046837017 0.05060005187988281 3 0.8621492146004572 3.285017282082344 11095.0 48.64427676885352 0.0 - - - - - - - 326.0 22 4 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2429 306 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A948.[MT7]-GLLLPSSEEPGPAQEASR.2y10_1.heavy 991.519 / 1041.5 1958.0 29.840399742126465 34 11 10 3 10 0.753970902352698 87.19873046837017 0.05060005187988281 3 0.8621492146004572 3.285017282082344 1958.0 2.2 0.0 - - - - - - - 326.0 3 2 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2431 307 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A949.[MT7]-RTTSDYFLLQVLLK[MT7].4b7_1.heavy 497.047 / 1015.5 3284.0 43.15999984741211 37 7 10 10 10 0.6216176584367517 83.08587047530764 0.0 3 0.7356886896562967 2.345515085602752 3284.0 28.034146341463412 0.0 - - - - - - - 164.0 6 2 SAE1 SUMO1 activating enzyme subunit 1 2433 307 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A949.[MT7]-RTTSDYFLLQVLLK[MT7].4b5_1.heavy 497.047 / 705.365 6240.0 43.15999984741211 37 7 10 10 10 0.6216176584367517 83.08587047530764 0.0 3 0.7356886896562967 2.345515085602752 6240.0 62.01951219512195 0.0 - - - - - - - 210.85714285714286 12 7 SAE1 SUMO1 activating enzyme subunit 1 2435 307 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A949.[MT7]-RTTSDYFLLQVLLK[MT7].4y3_1.heavy 497.047 / 517.383 19047.0 43.15999984741211 37 7 10 10 10 0.6216176584367517 83.08587047530764 0.0 3 0.7356886896562967 2.345515085602752 19047.0 49.466385333758915 0.0 - - - - - - - 375.35714285714283 38 14 SAE1 SUMO1 activating enzyme subunit 1 2437 307 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A949.[MT7]-RTTSDYFLLQVLLK[MT7].4b6_1.heavy 497.047 / 868.428 6896.0 43.15999984741211 37 7 10 10 10 0.6216176584367517 83.08587047530764 0.0 3 0.7356886896562967 2.345515085602752 6896.0 71.48292682926828 0.0 - - - - - - - 287.25 13 4 SAE1 SUMO1 activating enzyme subunit 1 2439 308 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1032.[MT7]-LSSAVR.2y5_1.heavy 388.741 / 519.289 123642.0 19.54560089111328 38 16 4 10 8 2.2901896965884077 34.74783933301754 0.0 4 0.9625848329548089 6.360262498940016 123642.0 34.36143843320106 1.0 - - - - - - - 416.0 416 1 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2441 308 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1032.[MT7]-LSSAVR.2b4_1.heavy 388.741 / 503.295 73562.0 19.54560089111328 38 16 4 10 8 2.2901896965884077 34.74783933301754 0.0 4 0.9625848329548089 6.360262498940016 73562.0 25.143329678077308 1.0 - - - - - - - 321.45454545454544 147 11 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2443 308 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1032.[MT7]-LSSAVR.2b5_1.heavy 388.741 / 602.363 24936.0 19.54560089111328 38 16 4 10 8 2.2901896965884077 34.74783933301754 0.0 4 0.9625848329548089 6.360262498940016 24936.0 47.7876385298936 0.0 - - - - - - - 623.0 49 8 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2445 308 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1032.[MT7]-LSSAVR.2y1_1.heavy 388.741 / 175.119 55483.0 19.54560089111328 38 16 4 10 8 2.2901896965884077 34.74783933301754 0.0 4 0.9625848329548089 6.360262498940016 55483.0 37.7361251025835 1.0 - - - - - - - 831.0 110 3 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2447 309 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1380.[MT7]-LFELILMEDIK[MT7].3y3_1.heavy 551.324 / 519.326 21804.0 47.30059814453125 46 16 10 10 10 2.857849217047812 34.99134922985932 0.0 3 0.9699663303282141 7.103382157993547 21804.0 291.29081110358834 0.0 - - - - - - - 200.1 43 10 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2449 309 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1380.[MT7]-LFELILMEDIK[MT7].3b4_1.heavy 551.324 / 647.388 46873.0 47.30059814453125 46 16 10 10 10 2.857849217047812 34.99134922985932 0.0 3 0.9699663303282141 7.103382157993547 46873.0 124.91490378228606 0.0 - - - - - - - 210.54545454545453 93 11 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2451 309 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1380.[MT7]-LFELILMEDIK[MT7].3b5_1.heavy 551.324 / 760.472 28018.0 47.30059814453125 46 16 10 10 10 2.857849217047812 34.99134922985932 0.0 3 0.9699663303282141 7.103382157993547 28018.0 276.23653827606995 0.0 - - - - - - - 152.0 56 9 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2453 309 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1380.[MT7]-LFELILMEDIK[MT7].3b3_1.heavy 551.324 / 534.304 35286.0 47.30059814453125 46 16 10 10 10 2.857849217047812 34.99134922985932 0.0 3 0.9699663303282141 7.103382157993547 35286.0 314.7953566074106 0.0 - - - - - - - 171.125 70 8 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2455 310 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1030.[MT7]-AIPATR.2y4_1.heavy 386.743 / 444.257 203470.0 17.57360076904297 48 18 10 10 10 4.368507801812487 22.891111687727822 0.0 3 0.980031231090052 8.718893442006536 203470.0 162.8637936447169 0.0 - - - - - - - 272.3333333333333 406 3 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2457 310 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1030.[MT7]-AIPATR.2y5_1.heavy 386.743 / 557.341 67415.0 17.57360076904297 48 18 10 10 10 4.368507801812487 22.891111687727822 0.0 3 0.980031231090052 8.718893442006536 67415.0 138.19788437147665 0.0 - - - - - - - 409.0 134 4 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2459 310 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1030.[MT7]-AIPATR.2b4_1.heavy 386.743 / 497.32 21859.0 17.57360076904297 48 18 10 10 10 4.368507801812487 22.891111687727822 0.0 3 0.980031231090052 8.718893442006536 21859.0 54.64322161205228 0.0 - - - - - - - 204.0 43 3 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2461 310 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1030.[MT7]-AIPATR.2b1_1.heavy 386.743 / 216.146 99284.0 17.57360076904297 48 18 10 10 10 4.368507801812487 22.891111687727822 0.0 3 0.980031231090052 8.718893442006536 99284.0 158.19968307500528 0.0 - - - - - - - 272.3333333333333 198 3 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2463 311 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1241.[MT7]-RIVEGILK[MT7].3b6_1.heavy 405.939 / 812.511 16464.0 26.171300888061523 47 17 10 10 10 2.0449771257334595 37.24727434606234 0.0 3 0.9716115590263905 7.307331285758352 16464.0 79.39804514034516 0.0 - - - - - - - 311.0 32 3 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 2465 311 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1241.[MT7]-RIVEGILK[MT7].3b4_1.heavy 405.939 / 642.406 47839.0 26.171300888061523 47 17 10 10 10 2.0449771257334595 37.24727434606234 0.0 3 0.9716115590263905 7.307331285758352 47839.0 193.86833477084855 0.0 - - - - - - - 311.0 95 4 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 2467 311 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1241.[MT7]-RIVEGILK[MT7].3b5_1.heavy 405.939 / 699.427 162157.0 26.171300888061523 47 17 10 10 10 2.0449771257334595 37.24727434606234 0.0 3 0.9716115590263905 7.307331285758352 162157.0 362.09116199594985 0.0 - - - - - - - 311.0 324 2 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 2469 311 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1241.[MT7]-RIVEGILK[MT7].3y4_1.heavy 405.939 / 574.404 76419.0 26.171300888061523 47 17 10 10 10 2.0449771257334595 37.24727434606234 0.0 3 0.9716115590263905 7.307331285758352 76419.0 306.70790647044674 0.0 - - - - - - - 311.0 152 4 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 2471 312 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1130.[MT7]-IYLEGK[MT7].2y4_1.heavy 505.81 / 590.363 70045.0 26.445600509643555 47 17 10 10 10 3.799358981366377 20.726710584990247 0.0 3 0.9785373323779678 8.408928994741737 70045.0 81.0225518208807 0.0 - - - - - - - 317.0 140 5 SSBP1 single-stranded DNA binding protein 1 2473 312 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1130.[MT7]-IYLEGK[MT7].2y5_1.heavy 505.81 / 753.426 135336.0 26.445600509643555 47 17 10 10 10 3.799358981366377 20.726710584990247 0.0 3 0.9785373323779678 8.408928994741737 135336.0 162.8966535175033 0.0 - - - - - - - 317.0 270 6 SSBP1 single-stranded DNA binding protein 1 2475 312 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1130.[MT7]-IYLEGK[MT7].2b4_1.heavy 505.81 / 663.383 26307.0 26.445600509643555 47 17 10 10 10 3.799358981366377 20.726710584990247 0.0 3 0.9785373323779678 8.408928994741737 26307.0 37.75925867507887 0.0 - - - - - - - 317.0 52 3 SSBP1 single-stranded DNA binding protein 1 2477 312 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1130.[MT7]-IYLEGK[MT7].2y2_1.heavy 505.81 / 348.236 103958.0 26.445600509643555 47 17 10 10 10 3.799358981366377 20.726710584990247 0.0 3 0.9785373323779678 8.408928994741737 103958.0 97.89105047318611 0.0 - - - - - - - 317.0 207 1 SSBP1 single-stranded DNA binding protein 1 2479 313 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 ENO_ECO24.IQLVGDDLFVTNTK.2y8.peptide 781.92 / 937.5 173704.0 36.206765492757164 23 -3 10 6 10 null 0.0 0.03620147705078125 3 0.0 0.0 173704.0 206.55335745488756 0.0 - - - - - - - 1703.7142857142858 347 7 2481 313 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 ENO_ECO24.IQLVGDDLFVTNTK.2y6.peptide 781.92 / 709.39 341001.0 36.206765492757164 23 -3 10 6 10 null 0.0 0.03620147705078125 3 0.0 0.0 341001.0 117.69838999253743 0.0 - - - - - - - 1246.0 682 1 2483 313 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 ENO_ECO24.IQLVGDDLFVTNTK.2y5.peptide 781.92 / 562.32 460245.0 36.206765492757164 23 -3 10 6 10 null 0.0 0.03620147705078125 3 0.0 0.0 460245.0 137.37565553903897 0.0 - - - - - - - 890.0 920 1 2485 314 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1124.[MT7]-ELVLLK[MT7].2y4_1.heavy 501.844 / 616.451 34396.0 32.110801696777344 48 18 10 10 10 4.2749812100249285 18.467543615655863 0.0 3 0.9882185144489759 11.358867462164367 34396.0 79.85887631448965 0.0 - - - - - - - 280.0 68 4 MAPK9 mitogen-activated protein kinase 9 2487 314 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1124.[MT7]-ELVLLK[MT7].2y5_1.heavy 501.844 / 729.536 36913.0 32.110801696777344 48 18 10 10 10 4.2749812100249285 18.467543615655863 0.0 3 0.9882185144489759 11.358867462164367 36913.0 178.07951891132123 0.0 - - - - - - - 280.0 73 5 MAPK9 mitogen-activated protein kinase 9 2489 314 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1124.[MT7]-ELVLLK[MT7].2b4_1.heavy 501.844 / 599.388 29363.0 32.110801696777344 48 18 10 10 10 4.2749812100249285 18.467543615655863 0.0 3 0.9882185144489759 11.358867462164367 29363.0 37.900348114698204 0.0 - - - - - - - 280.0 58 3 MAPK9 mitogen-activated protein kinase 9 2491 314 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1124.[MT7]-ELVLLK[MT7].2y3_1.heavy 501.844 / 517.383 57607.0 32.110801696777344 48 18 10 10 10 4.2749812100249285 18.467543615655863 0.0 3 0.9882185144489759 11.358867462164367 57607.0 54.35702224870877 0.0 - - - - - - - 280.0 115 2 MAPK9 mitogen-activated protein kinase 9 2493 315 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1123.[MT7]-GANPDLK[MT7].2y4_1.heavy 501.795 / 616.379 58810.0 17.68120002746582 45 15 10 10 10 2.841732391919681 26.462929690607332 0.0 3 0.9533736650371435 5.693045487131591 58810.0 94.77858570602442 0.0 - - - - - - - 410.0 117 5 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 2495 315 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1123.[MT7]-GANPDLK[MT7].2y5_1.heavy 501.795 / 730.422 16598.0 17.68120002746582 45 15 10 10 10 2.841732391919681 26.462929690607332 0.0 3 0.9533736650371435 5.693045487131591 16598.0 29.79543414634146 0.0 - - - - - - - 307.5 33 4 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 2497 315 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1123.[MT7]-GANPDLK[MT7].2b6_1.heavy 501.795 / 712.375 12295.0 17.68120002746582 45 15 10 10 10 2.841732391919681 26.462929690607332 0.0 3 0.9533736650371435 5.693045487131591 12295.0 24.829902439024394 0.0 - - - - - - - 328.0 24 5 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 2499 315 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1123.[MT7]-GANPDLK[MT7].2b5_1.heavy 501.795 / 599.291 83399.0 17.68120002746582 45 15 10 10 10 2.841732391919681 26.462929690607332 0.0 3 0.9533736650371435 5.693045487131591 83399.0 126.3659653589757 0.0 - - - - - - - 351.42857142857144 166 7 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 2501 316 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A974.[MT7]-YFEEYALVNQDILENK[MT7].3b6_1.heavy 759.394 / 947.427 44662.0 38.8473014831543 48 18 10 10 10 69.09074938479067 1.4473717667044665 0.0 3 0.9848107983669914 10.001004975651945 44662.0 116.16565281030446 0.0 - - - - - - - 360.0 89 12 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2503 316 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A974.[MT7]-YFEEYALVNQDILENK[MT7].3b4_1.heavy 759.394 / 713.326 44502.0 38.8473014831543 48 18 10 10 10 69.09074938479067 1.4473717667044665 0.0 3 0.9848107983669914 10.001004975651945 44502.0 82.0401388585259 0.0 - - - - - - - 800.0 89 9 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2505 316 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A974.[MT7]-YFEEYALVNQDILENK[MT7].3b5_1.heavy 759.394 / 876.39 33457.0 38.8473014831543 48 18 10 10 10 69.09074938479067 1.4473717667044665 0.0 3 0.9848107983669914 10.001004975651945 33457.0 104.97133749999999 0.0 - - - - - - - 329.4117647058824 66 17 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2507 316 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A974.[MT7]-YFEEYALVNQDILENK[MT7].3b3_1.heavy 759.394 / 584.284 11526.0 38.8473014831543 48 18 10 10 10 69.09074938479067 1.4473717667044665 0.0 3 0.9848107983669914 10.001004975651945 11526.0 23.412187499999998 0.0 - - - - - - - 760.0 23 12 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2509 317 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1237.[MT7]-APTNIVYK[MT7].2b4_1.heavy 597.36 / 528.29 12114.0 24.112799644470215 39 13 10 6 10 3.7390487806126114 26.7447700919312 0.039600372314453125 3 0.9223913835819154 4.4010652662584935 12114.0 14.414126582278481 1.0 - - - - - - - 691.375 24 8 RPA2 replication protein A2, 32kDa 2511 317 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1237.[MT7]-APTNIVYK[MT7].2y3_1.heavy 597.36 / 553.347 32391.0 24.112799644470215 39 13 10 6 10 3.7390487806126114 26.7447700919312 0.039600372314453125 3 0.9223913835819154 4.4010652662584935 32391.0 29.240327997535644 0.0 - - - - - - - 714.8571428571429 64 7 RPA2 replication protein A2, 32kDa 2513 317 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1237.[MT7]-APTNIVYK[MT7].2b5_1.heavy 597.36 / 641.374 22384.0 24.112799644470215 39 13 10 6 10 3.7390487806126114 26.7447700919312 0.039600372314453125 3 0.9223913835819154 4.4010652662584935 22384.0 39.95118987341772 0.0 - - - - - - - 263.0 44 4 RPA2 replication protein A2, 32kDa 2515 317 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1237.[MT7]-APTNIVYK[MT7].2y7_1.heavy 597.36 / 978.574 89010.0 24.112799644470215 39 13 10 6 10 3.7390487806126114 26.7447700919312 0.039600372314453125 3 0.9223913835819154 4.4010652662584935 89010.0 114.23989818027209 0.0 - - - - - - - 263.0 178 4 RPA2 replication protein A2, 32kDa 2517 318 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1122.[MT7]-ISDEGIAYLVK[MT7].3b6_1.heavy 499.292 / 759.401 14259.0 34.53144931793213 44 18 10 6 10 6.400107361241579 15.624737891990716 0.039402008056640625 3 0.9832949618082663 9.535252494304142 14259.0 68.7746440677966 0.0 - - - - - - - 330.6 28 5 RFC4 replication factor C (activator 1) 4, 37kDa 2519 318 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1122.[MT7]-ISDEGIAYLVK[MT7].3y3_1.heavy 499.292 / 503.367 20871.0 34.53144931793213 44 18 10 6 10 6.400107361241579 15.624737891990716 0.039402008056640625 3 0.9832949618082663 9.535252494304142 20871.0 109.57462016129033 0.0 - - - - - - - 298.55555555555554 41 9 RFC4 replication factor C (activator 1) 4, 37kDa 2521 318 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1122.[MT7]-ISDEGIAYLVK[MT7].3b4_1.heavy 499.292 / 589.295 7026.0 34.53144931793213 44 18 10 6 10 6.400107361241579 15.624737891990716 0.039402008056640625 3 0.9832949618082663 9.535252494304142 7026.0 48.57572797136541 0.0 - - - - - - - 263.1818181818182 14 11 RFC4 replication factor C (activator 1) 4, 37kDa 2523 318 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1122.[MT7]-ISDEGIAYLVK[MT7].3b5_1.heavy 499.292 / 646.316 32237.0 34.53144931793213 44 18 10 6 10 6.400107361241579 15.624737891990716 0.039402008056640625 3 0.9832949618082663 9.535252494304142 32237.0 183.0320553306579 0.0 - - - - - - - 275.6666666666667 64 6 RFC4 replication factor C (activator 1) 4, 37kDa 2525 319 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A975.[MT7]-QATTIIADNIIFLSDQTK[MT7].4y5_1.heavy 570.823 / 722.38 N/A 41.555999755859375 50 20 10 10 10 5.041591833871262 19.83500515217502 0.0 3 0.9922426011559675 14.003066763524727 333.0 1.0006012024048097 22.0 - - - - - - - 0.0 1 0 SSBP1 single-stranded DNA binding protein 1 2527 319 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A975.[MT7]-QATTIIADNIIFLSDQTK[MT7].4b5_1.heavy 570.823 / 659.385 6654.0 41.555999755859375 50 20 10 10 10 5.041591833871262 19.83500515217502 0.0 3 0.9922426011559675 14.003066763524727 6654.0 6.00060120240481 0.0 - - - - - - - 317.54545454545456 13 11 SSBP1 single-stranded DNA binding protein 1 2529 319 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A975.[MT7]-QATTIIADNIIFLSDQTK[MT7].4b6_1.heavy 570.823 / 772.469 1830.0 41.555999755859375 50 20 10 10 10 5.041591833871262 19.83500515217502 0.0 3 0.9922426011559675 14.003066763524727 1830.0 15.433734939759036 0.0 - - - - - - - 249.5 3 8 SSBP1 single-stranded DNA binding protein 1 2531 319 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A975.[MT7]-QATTIIADNIIFLSDQTK[MT7].4b4_1.heavy 570.823 / 546.3 5822.0 41.555999755859375 50 20 10 10 10 5.041591833871262 19.83500515217502 0.0 3 0.9922426011559675 14.003066763524727 5822.0 66.35677108433734 0.0 - - - - - - - 277.3333333333333 11 6 SSBP1 single-stranded DNA binding protein 1 2533 320 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1236.[MT7]-GLLDVTC[CAM]K[MT7].2y4_1.heavy 597.344 / 651.362 46333.0 28.73349952697754 48 18 10 10 10 5.592953125855009 17.879642069181966 0.0 3 0.9877755052871849 11.15073505944392 46333.0 158.26304200600086 0.0 - - - - - - - 333.0 92 2 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 2535 320 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1236.[MT7]-GLLDVTC[CAM]K[MT7].2y5_1.heavy 597.344 / 766.389 46667.0 28.73349952697754 48 18 10 10 10 5.592953125855009 17.879642069181966 0.0 3 0.9877755052871849 11.15073505944392 46667.0 130.13586206896554 0.0 - - - - - - - 333.0 93 3 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 2537 320 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1236.[MT7]-GLLDVTC[CAM]K[MT7].2b4_1.heavy 597.344 / 543.326 74333.0 28.73349952697754 48 18 10 10 10 5.592953125855009 17.879642069181966 0.0 3 0.9877755052871849 11.15073505944392 74333.0 76.94775946736684 0.0 - - - - - - - 333.0 148 2 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 2539 320 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1236.[MT7]-GLLDVTC[CAM]K[MT7].2y3_1.heavy 597.344 / 552.293 49333.0 28.73349952697754 48 18 10 10 10 5.592953125855009 17.879642069181966 0.0 3 0.9877755052871849 11.15073505944392 49333.0 40.57866566652379 0.0 - - - - - - - 333.0 98 3 LOC100506332;SKP1 s-phase kinase-associated protein 1-like;S-phase kinase-associated protein 1 2541 321 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A976.[MT7]-AC[CAM]QEQIEAVLLNSLQQYR.3y7_1.heavy 769.734 / 908.458 58163.0 42.44579887390137 43 17 10 6 10 3.1664819196411487 31.580789828521368 0.036998748779296875 3 0.9764864425162899 8.032459102396484 58163.0 166.76514084507042 0.0 - - - - - - - 301.1818181818182 116 11 CCND2 cyclin D2 2543 321 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A976.[MT7]-AC[CAM]QEQIEAVLLNSLQQYR.3b4_1.heavy 769.734 / 633.278 24524.0 42.44579887390137 43 17 10 6 10 3.1664819196411487 31.580789828521368 0.036998748779296875 3 0.9764864425162899 8.032459102396484 24524.0 73.32527967806841 0.0 - - - - - - - 331.3333333333333 49 12 CCND2 cyclin D2 2545 321 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A976.[MT7]-AC[CAM]QEQIEAVLLNSLQQYR.3b5_1.heavy 769.734 / 761.337 77053.0 42.44579887390137 43 17 10 6 10 3.1664819196411487 31.580789828521368 0.036998748779296875 3 0.9764864425162899 8.032459102396484 77053.0 195.60402749832326 0.0 - - - - - - - 303.6666666666667 154 6 CCND2 cyclin D2 2547 321 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A976.[MT7]-AC[CAM]QEQIEAVLLNSLQQYR.3b7_1.heavy 769.734 / 1003.46 19222.0 42.44579887390137 43 17 10 6 10 3.1664819196411487 31.580789828521368 0.036998748779296875 3 0.9764864425162899 8.032459102396484 19222.0 63.42873239436619 0.0 - - - - - - - 295.85714285714283 38 14 CCND2 cyclin D2 2549 322 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1234.[MT7]-TAQTILEK[MT7].2y4_1.heavy 596.363 / 646.426 16427.0 24.675500869750977 48 18 10 10 10 4.288176292744218 23.319936768738817 0.0 3 0.983771553883858 9.674640109313446 16427.0 6.6504402216569645 0.0 - - - - - - - 278.0 32 1 RNASEH2A ribonuclease H2, subunit A 2551 322 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1234.[MT7]-TAQTILEK[MT7].2y5_1.heavy 596.363 / 747.473 27008.0 24.675500869750977 48 18 10 10 10 4.288176292744218 23.319936768738817 0.0 3 0.983771553883858 9.674640109313446 27008.0 31.33029348641099 0.0 - - - - - - - 278.0 54 2 RNASEH2A ribonuclease H2, subunit A 2553 322 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1234.[MT7]-TAQTILEK[MT7].2y3_1.heavy 596.363 / 533.341 29792.0 24.675500869750977 48 18 10 10 10 4.288176292744218 23.319936768738817 0.0 3 0.983771553883858 9.674640109313446 29792.0 28.737280656747046 0.0 - - - - - - - 278.0 59 3 RNASEH2A ribonuclease H2, subunit A 2555 322 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1234.[MT7]-TAQTILEK[MT7].2y7_1.heavy 596.363 / 946.569 25894.0 24.675500869750977 48 18 10 10 10 4.288176292744218 23.319936768738817 0.0 3 0.983771553883858 9.674640109313446 25894.0 89.35532131541898 0.0 - - - - - - - 278.0 51 5 RNASEH2A ribonuclease H2, subunit A 2557 323 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1233.[MT7]-NRAEASLER.3b6_1.heavy 397.218 / 773.402 9708.0 16.82990074157715 48 18 10 10 10 6.374758567322607 15.686868599637007 0.0 3 0.9854162030550246 10.20699361800707 9708.0 72.05003030303031 0.0 - - - - - - - 297.0 19 8 SAE1 SUMO1 activating enzyme subunit 1 2559 323 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1233.[MT7]-NRAEASLER.3b5_1.heavy 397.218 / 686.37 5349.0 16.82990074157715 48 18 10 10 10 6.374758567322607 15.686868599637007 0.0 3 0.9854162030550246 10.20699361800707 5349.0 35.29979797979798 0.0 - - - - - - - 277.2 10 5 SAE1 SUMO1 activating enzyme subunit 1 2561 323 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1233.[MT7]-NRAEASLER.3y4_1.heavy 397.218 / 504.278 20209.0 16.82990074157715 48 18 10 10 10 6.374758567322607 15.686868599637007 0.0 3 0.9854162030550246 10.20699361800707 20209.0 31.783708999158954 0.0 - - - - - - - 297.0 40 4 SAE1 SUMO1 activating enzyme subunit 1 2563 323 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1233.[MT7]-NRAEASLER.3y5_1.heavy 397.218 / 575.315 22388.0 16.82990074157715 48 18 10 10 10 6.374758567322607 15.686868599637007 0.0 3 0.9854162030550246 10.20699361800707 22388.0 47.95439906793188 0.0 - - - - - - - 396.0 44 1 SAE1 SUMO1 activating enzyme subunit 1 2565 324 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A971.[MT7]-EFSPSFINFVNLC[CAM]LTK[MT7].3b6_1.heavy 735.394 / 839.406 14182.0 43.94175052642822 40 14 10 6 10 1.2941479411514205 54.65249845204818 0.039798736572265625 3 0.9356048711842727 4.837013634219158 14182.0 13.28198756874427 0.0 - - - - - - - 242.66666666666666 28 9 MAP2K4 mitogen-activated protein kinase kinase 4 2567 324 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A971.[MT7]-EFSPSFINFVNLC[CAM]LTK[MT7].3b5_1.heavy 735.394 / 692.337 7948.0 43.94175052642822 40 14 10 6 10 1.2941479411514205 54.65249845204818 0.039798736572265625 3 0.9356048711842727 4.837013634219158 7948.0 15.284615384615385 1.0 - - - - - - - 312.0 15 12 MAP2K4 mitogen-activated protein kinase kinase 4 2569 324 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A971.[MT7]-EFSPSFINFVNLC[CAM]LTK[MT7].3y4_1.heavy 735.394 / 665.377 16675.0 43.94175052642822 40 14 10 6 10 1.2941479411514205 54.65249845204818 0.039798736572265625 3 0.9356048711842727 4.837013634219158 16675.0 62.8108269765643 0.0 - - - - - - - 368.72727272727275 33 11 MAP2K4 mitogen-activated protein kinase kinase 4 2571 324 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A971.[MT7]-EFSPSFINFVNLC[CAM]LTK[MT7].3b3_1.heavy 735.394 / 508.252 9506.0 43.94175052642822 40 14 10 6 10 1.2941479411514205 54.65249845204818 0.039798736572265625 3 0.9356048711842727 4.837013634219158 9506.0 18.09933316400431 0.0 - - - - - - - 810.2 19 10 MAP2K4 mitogen-activated protein kinase kinase 4 2573 325 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1126.[MT7]-NITELK[MT7].2y4_1.heavy 503.313 / 634.389 59945.0 23.92167568206787 44 18 10 6 10 2.509630404101193 31.11836523392318 0.037899017333984375 3 0.985293443382048 10.164199512627773 59945.0 49.70545867839153 0.0 - - - - - - - 258.0 119 3 RFC5 replication factor C (activator 1) 5, 36.5kDa 2575 325 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1126.[MT7]-NITELK[MT7].2y5_1.heavy 503.313 / 747.473 36174.0 23.92167568206787 44 18 10 6 10 2.509630404101193 31.11836523392318 0.037899017333984375 3 0.985293443382048 10.164199512627773 36174.0 170.53069467366842 0.0 - - - - - - - 258.0 72 6 RFC5 replication factor C (activator 1) 5, 36.5kDa 2577 325 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1126.[MT7]-NITELK[MT7].2b4_1.heavy 503.313 / 602.327 18604.0 23.92167568206787 44 18 10 6 10 2.509630404101193 31.11836523392318 0.037899017333984375 3 0.985293443382048 10.164199512627773 18604.0 15.929363695953388 1.0 - - - - - - - 258.0 69 3 RFC5 replication factor C (activator 1) 5, 36.5kDa 2579 325 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1126.[MT7]-NITELK[MT7].2y3_1.heavy 503.313 / 533.341 19120.0 23.92167568206787 44 18 10 6 10 2.509630404101193 31.11836523392318 0.037899017333984375 3 0.985293443382048 10.164199512627773 19120.0 17.228081813156436 0.0 - - - - - - - 258.0 38 3 RFC5 replication factor C (activator 1) 5, 36.5kDa 2581 326 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A972.[MT7]-LVILDEADAMTQDAQNALR.3y7_1.heavy 744.387 / 787.406 7286.0 44.13992500305176 42 18 10 6 8 7.824049434860138 12.781105338426022 0.03929901123046875 4 0.9883169213856653 11.406699142356429 7286.0 14.87597505376344 1.0 - - - - - - - 183.1818181818182 21 11 RFC5 replication factor C (activator 1) 5, 36.5kDa 2583 326 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A972.[MT7]-LVILDEADAMTQDAQNALR.3y6_1.heavy 744.387 / 672.379 9767.0 44.13992500305176 42 18 10 6 8 7.824049434860138 12.781105338426022 0.03929901123046875 4 0.9883169213856653 11.406699142356429 9767.0 18.021690322580646 0.0 - - - - - - - 199.28571428571428 19 7 RFC5 replication factor C (activator 1) 5, 36.5kDa 2585 326 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A972.[MT7]-LVILDEADAMTQDAQNALR.3b5_1.heavy 744.387 / 698.457 11937.0 44.13992500305176 42 18 10 6 8 7.824049434860138 12.781105338426022 0.03929901123046875 4 0.9883169213856653 11.406699142356429 11937.0 80.86354838709677 0.0 - - - - - - - 324.09090909090907 23 11 RFC5 replication factor C (activator 1) 5, 36.5kDa 2587 326 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A972.[MT7]-LVILDEADAMTQDAQNALR.3y9_1.heavy 744.387 / 1016.51 5891.0 44.13992500305176 42 18 10 6 8 7.824049434860138 12.781105338426022 0.03929901123046875 4 0.9883169213856653 11.406699142356429 5891.0 17.102903225806454 1.0 - - - - - - - 241.11111111111111 11 9 RFC5 replication factor C (activator 1) 5, 36.5kDa 2589 327 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1029.[MT7]-LAQER.2b3_1.heavy 380.725 / 457.289 7066.0 16.072399139404297 31 13 4 10 4 1.7133714318398494 47.098427952993916 0.0 8 0.917659997488986 4.271013200386995 7066.0 0.12335893502390508 3.0 - - - - - - - 305.6 15 5 LOC100506339;C19orf21;CCDC66;NOL8;C9orf86;FASTKD5;TTC3;UBE2I;TIMELESS;USP6NL coiled-coil domain-containing protein 162-like;chromosome 19 open reading frame 21;coiled-coil domain containing 66;nucleolar protein 8;chromosome 9 open reading frame 86;FAST kinase domains 5;tetratricopeptide repeat domain 3;ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast);timeless homolog (Drosophila);USP6 N-terminal like 2591 327 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1029.[MT7]-LAQER.2y4_1.heavy 380.725 / 503.257 44876.0 16.072399139404297 31 13 4 10 4 1.7133714318398494 47.098427952993916 0.0 8 0.917659997488986 4.271013200386995 44876.0 52.05109947643979 0.0 - - - - - - - 254.66666666666666 89 3 LOC100506339;C19orf21;CCDC66;NOL8;C9orf86;FASTKD5;TTC3;UBE2I;TIMELESS;USP6NL coiled-coil domain-containing protein 162-like;chromosome 19 open reading frame 21;coiled-coil domain containing 66;nucleolar protein 8;chromosome 9 open reading frame 86;FAST kinase domains 5;tetratricopeptide repeat domain 3;ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast);timeless homolog (Drosophila);USP6 N-terminal like 2593 327 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1029.[MT7]-LAQER.2b4_1.heavy 380.725 / 586.332 15086.0 16.072399139404297 31 13 4 10 4 1.7133714318398494 47.098427952993916 0.0 8 0.917659997488986 4.271013200386995 15086.0 6.213682096214519 3.0 - - - - - - - 191.0 66 3 LOC100506339;C19orf21;CCDC66;NOL8;C9orf86;FASTKD5;TTC3;UBE2I;TIMELESS;USP6NL coiled-coil domain-containing protein 162-like;chromosome 19 open reading frame 21;coiled-coil domain containing 66;nucleolar protein 8;chromosome 9 open reading frame 86;FAST kinase domains 5;tetratricopeptide repeat domain 3;ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast);timeless homolog (Drosophila);USP6 N-terminal like 2595 327 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1029.[MT7]-LAQER.2y1_1.heavy 380.725 / 175.119 28454.0 16.072399139404297 31 13 4 10 4 1.7133714318398494 47.098427952993916 0.0 8 0.917659997488986 4.271013200386995 28454.0 6.69480864367539 2.0 - - - - - - - 1528.0 171 1 LOC100506339;C19orf21;CCDC66;NOL8;C9orf86;FASTKD5;TTC3;UBE2I;TIMELESS;USP6NL coiled-coil domain-containing protein 162-like;chromosome 19 open reading frame 21;coiled-coil domain containing 66;nucleolar protein 8;chromosome 9 open reading frame 86;FAST kinase domains 5;tetratricopeptide repeat domain 3;ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast);timeless homolog (Drosophila);USP6 N-terminal like 2597 328 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 RBSB_ECOLI.LAATIAQLPDQIGAK.3y7.peptide 503.96 / 728.39 157515.0 31.384000778198242 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 157515.0 297.51701537721976 0.0 - - - - - - - 296.0 315 4 2599 328 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 RBSB_ECOLI.LAATIAQLPDQIGAK.3y6.peptide 503.96 / 631.34 33690.0 31.384000778198242 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 33690.0 36.168343326212074 0.0 - - - - - - - 296.0 67 2 2601 328 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 RBSB_ECOLI.LAATIAQLPDQIGAK.3y5.peptide 503.96 / 516.31 23346.0 31.384000778198242 27 -3 10 10 10 null 0.0 0.0 3 0.0 0.0 23346.0 62.66340610853902 0.0 - - - - - - - 296.0 46 5 2603 329 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1026.[MT7]-TSAGK[MT7].2y4_1.heavy 376.231 / 506.306 33177.0 12.132100105285645 34 14 2 10 8 2.803212471017353 35.6733572763065 0.0 4 0.9353418358684856 4.8270565205522535 33177.0 34.51443433029908 1.0 - - - - - - - 694.875 66 8 RNASEH1;ABR;KIAA1462 ribonuclease H1;active BCR-related gene;KIAA1462 2605 329 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1026.[MT7]-TSAGK[MT7].2y3_1.heavy 376.231 / 419.273 8280.0 12.132100105285645 34 14 2 10 8 2.803212471017353 35.6733572763065 0.0 4 0.9353418358684856 4.8270565205522535 8280.0 15.725212085530014 1.0 - - - - - - - 201.90243902439025 16 41 RNASEH1;ABR;KIAA1462 ribonuclease H1;active BCR-related gene;KIAA1462 2607 329 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1026.[MT7]-TSAGK[MT7].2y2_1.heavy 376.231 / 348.236 10231.0 12.132100105285645 34 14 2 10 8 2.803212471017353 35.6733572763065 0.0 4 0.9353418358684856 4.8270565205522535 10231.0 16.71998539149213 3.0 - - - - - - - 685.2352941176471 79 17 RNASEH1;ABR;KIAA1462 ribonuclease H1;active BCR-related gene;KIAA1462 2609 329 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1026.[MT7]-TSAGK[MT7].2y1_1.heavy 376.231 / 291.215 3962.0 12.132100105285645 34 14 2 10 8 2.803212471017353 35.6733572763065 0.0 4 0.9353418358684856 4.8270565205522535 3962.0 1.786696730552424 25.0 - - - - - - - 1740.2857142857142 147 7 RNASEH1;ABR;KIAA1462 ribonuclease H1;active BCR-related gene;KIAA1462 2611 330 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1025.[MT7]-GPVGK[MT7].2b3_1.heavy 373.244 / 398.252 13383.0 15.423999786376953 41 13 10 10 8 1.3889565840067826 46.50184551684656 0.0 4 0.9010407505072996 3.890325235436892 13383.0 47.144659090909094 1.0 - - - - - - - 726.0 26 8 UBE2C ubiquitin-conjugating enzyme E2C 2613 330 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1025.[MT7]-GPVGK[MT7].2y4_1.heavy 373.244 / 544.357 65680.0 15.423999786376953 41 13 10 10 8 1.3889565840067826 46.50184551684656 0.0 4 0.9010407505072996 3.890325235436892 65680.0 105.23472961937392 0.0 - - - - - - - 234.66666666666666 131 9 UBE2C ubiquitin-conjugating enzyme E2C 2615 330 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1025.[MT7]-GPVGK[MT7].2y3_1.heavy 373.244 / 447.305 14439.0 15.423999786376953 41 13 10 10 8 1.3889565840067826 46.50184551684656 0.0 4 0.9010407505072996 3.890325235436892 14439.0 60.43596590909091 1.0 - - - - - - - 176.0 85 3 UBE2C ubiquitin-conjugating enzyme E2C 2617 330 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1025.[MT7]-GPVGK[MT7].2y2_1.heavy 373.244 / 348.236 51241.0 15.423999786376953 41 13 10 10 8 1.3889565840067826 46.50184551684656 0.0 4 0.9010407505072996 3.890325235436892 51241.0 76.13701546924024 0.0 - - - - - - - 264.0 102 2 UBE2C ubiquitin-conjugating enzyme E2C 2619 331 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A977.[MT7]-VC[CAM]EVVDGFIYVANAEAHK[MT7].3y7_1.heavy 770.399 / 884.471 21746.0 41.3390007019043 44 14 10 10 10 3.946318165389377 25.340075434625568 0.0 3 0.9305508662906311 4.655677365984143 21746.0 66.50152905198777 0.0 - - - - - - - 266.0 43 8 FBXO4 F-box protein 4 2621 331 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A977.[MT7]-VC[CAM]EVVDGFIYVANAEAHK[MT7].3b3_1.heavy 770.399 / 533.251 16024.0 41.3390007019043 44 14 10 10 10 3.946318165389377 25.340075434625568 0.0 3 0.9305508662906311 4.655677365984143 16024.0 26.951681957186544 0.0 - - - - - - - 218.33333333333334 32 12 FBXO4 F-box protein 4 2623 331 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A977.[MT7]-VC[CAM]EVVDGFIYVANAEAHK[MT7].3b8_1.heavy 770.399 / 1050.5 24199.0 41.3390007019043 44 14 10 10 10 3.946318165389377 25.340075434625568 0.0 3 0.9305508662906311 4.655677365984143 24199.0 203.84232602371895 0.0 - - - - - - - 232.0 48 12 FBXO4 F-box protein 4 2625 331 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A977.[MT7]-VC[CAM]EVVDGFIYVANAEAHK[MT7].3b7_1.heavy 770.399 / 903.436 29758.0 41.3390007019043 44 14 10 10 10 3.946318165389377 25.340075434625568 0.0 3 0.9305508662906311 4.655677365984143 29758.0 105.10853211009173 0.0 - - - - - - - 309.1111111111111 59 9 FBXO4 F-box protein 4 2627 332 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9901.[MT7]-RLGGGPDDAK[MT7].3y3_1.heavy 425.242 / 477.279 30559.0 16.470699310302734 33 17 0 10 6 3.984033252966009 25.10019210445912 0.0 6 0.97072554945247 7.195364236898692 30559.0 19.38028758227561 0.0 - - - - - - - 256.0 61 6 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2629 332 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9901.[MT7]-RLGGGPDDAK[MT7].3b4_1.heavy 425.242 / 528.337 6343.0 16.470699310302734 33 17 0 10 6 3.984033252966009 25.10019210445912 0.0 6 0.97072554945247 7.195364236898692 6343.0 20.643058777825964 3.0 - - - - - - - 288.0 28 4 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2631 332 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9901.[MT7]-RLGGGPDDAK[MT7].3b5_1.heavy 425.242 / 585.359 37671.0 16.470699310302734 33 17 0 10 6 3.984033252966009 25.10019210445912 0.0 6 0.97072554945247 7.195364236898692 37671.0 40.9498846110935 0.0 - - - - - - - 288.0 75 8 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2633 332 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9901.[MT7]-RLGGGPDDAK[MT7].3y4_1.heavy 425.242 / 592.306 26139.0 16.470699310302734 33 17 0 10 6 3.984033252966009 25.10019210445912 0.0 6 0.97072554945247 7.195364236898692 26139.0 11.004033492986427 3.0 - - - - - - - 314.1818181818182 997 11 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2635 333 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1024.[MT7]-VILVR.2b3_1.heavy 372.267 / 470.346 49994.0 26.353599548339844 43 13 10 10 10 1.5109993997646094 41.997933207099464 0.0 3 0.9112124075354914 4.110733058412964 49994.0 172.89571916184698 0.0 - - - - - - - 318.0 99 7 AKT3;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 2 2637 333 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1024.[MT7]-VILVR.2y4_1.heavy 372.267 / 500.355 46173.0 26.353599548339844 43 13 10 10 10 1.5109993997646094 41.997933207099464 0.0 3 0.9112124075354914 4.110733058412964 46173.0 60.5332426457247 0.0 - - - - - - - 827.8 92 5 AKT3;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 2 2639 333 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1024.[MT7]-VILVR.2b4_1.heavy 372.267 / 569.414 11464.0 26.353599548339844 43 13 10 10 10 1.5109993997646094 41.997933207099464 0.0 3 0.9112124075354914 4.110733058412964 11464.0 17.284674156120918 0.0 - - - - - - - 318.0 22 3 AKT3;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 2 2641 333 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1024.[MT7]-VILVR.2y3_1.heavy 372.267 / 387.271 19106.0 26.353599548339844 43 13 10 10 10 1.5109993997646094 41.997933207099464 0.0 3 0.9112124075354914 4.110733058412964 19106.0 43.70085086342229 0.0 - - - - - - - 637.0 38 2 AKT3;AKT2 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 2 2643 334 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9902.[MT7]-TDGSFIGYK[MT7].2y4_1.heavy 638.345 / 624.384 11937.0 26.769100189208984 42 12 10 10 10 2.76714125216909 36.13837924667293 0.0 3 0.8988594103560785 3.8474182392727103 11937.0 5.046023480317414 1.0 - - - - - - - 314.0 28 4 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2645 334 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9902.[MT7]-TDGSFIGYK[MT7].2y3_1.heavy 638.345 / 511.3 28272.0 26.769100189208984 42 12 10 10 10 2.76714125216909 36.13837924667293 0.0 3 0.8988594103560785 3.8474182392727103 28272.0 26.861716725478182 0.0 - - - - - - - 785.0 56 8 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2647 334 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9902.[MT7]-TDGSFIGYK[MT7].2b5_1.heavy 638.345 / 652.306 16963.0 26.769100189208984 42 12 10 10 10 2.76714125216909 36.13837924667293 0.0 3 0.8988594103560785 3.8474182392727103 16963.0 41.056942675159235 0.0 - - - - - - - 314.0 33 4 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2649 334 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A9902.[MT7]-TDGSFIGYK[MT7].2y7_1.heavy 638.345 / 915.506 23874.0 26.769100189208984 42 12 10 10 10 2.76714125216909 36.13837924667293 0.0 3 0.8988594103560785 3.8474182392727103 23874.0 24.581452010293283 0.0 - - - - - - - 314.0 47 4 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2651 335 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A979.[MT7]-NLFINPSPLPDLSWGC[CAM]SK[MT7].3b5_1.heavy 778.412 / 746.432 39161.0 40.83892631530762 43 17 10 6 10 3.5755315905311 22.163568786584854 0.03710174560546875 3 0.9779051582243561 8.287318381544637 39161.0 74.40320229538455 0.0 - - - - - - - 719.4285714285714 78 7 CCNE2 cyclin E2 2653 335 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A979.[MT7]-NLFINPSPLPDLSWGC[CAM]SK[MT7].3y4_1.heavy 778.412 / 595.299 27299.0 40.83892631530762 43 17 10 6 10 3.5755315905311 22.163568786584854 0.03710174560546875 3 0.9779051582243561 8.287318381544637 27299.0 62.528193379674526 0.0 - - - - - - - 306.6666666666667 54 9 CCNE2 cyclin E2 2655 335 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A979.[MT7]-NLFINPSPLPDLSWGC[CAM]SK[MT7].3b3_1.heavy 778.412 / 519.305 35586.0 40.83892631530762 43 17 10 6 10 3.5755315905311 22.163568786584854 0.03710174560546875 3 0.9779051582243561 8.287318381544637 35586.0 94.30087730200833 0.0 - - - - - - - 324.75 71 12 CCNE2 cyclin E2 2657 335 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A979.[MT7]-NLFINPSPLPDLSWGC[CAM]SK[MT7].3y9_1.heavy 778.412 / 1193.57 23399.0 40.83892631530762 43 17 10 6 10 3.5755315905311 22.163568786584854 0.03710174560546875 3 0.9779051582243561 8.287318381544637 23399.0 93.75648575217886 0.0 - - - - - - - 256.9166666666667 46 12 CCNE2 cyclin E2 2659 336 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1023.[MT7]-TESPR.2b3_1.heavy 367.202 / 462.232 9702.0 12.470149993896484 34 18 2 8 6 34.4925128513079 2.899179901188561 0.019500732421875 5 0.9899322487977488 12.289411714350482 9702.0 4.824914891742296 3.0 - - - - - - - 709.5714285714286 73 7 COL7A1;MAP2K7 collagen, type VII, alpha 1;mitogen-activated protein kinase kinase 7 2661 336 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1023.[MT7]-TESPR.2y4_1.heavy 367.202 / 488.246 12418.0 12.470149993896484 34 18 2 8 6 34.4925128513079 2.899179901188561 0.019500732421875 5 0.9899322487977488 12.289411714350482 12418.0 32.8921153931242 0.0 - - - - - - - 214.47368421052633 24 38 COL7A1;MAP2K7 collagen, type VII, alpha 1;mitogen-activated protein kinase kinase 7 2663 336 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1023.[MT7]-TESPR.2b4_1.heavy 367.202 / 559.284 2561.0 12.470149993896484 34 18 2 8 6 34.4925128513079 2.899179901188561 0.019500732421875 5 0.9899322487977488 12.289411714350482 2561.0 0.0 9.0 - - - - - - - 688.875 10 8 COL7A1;MAP2K7 collagen, type VII, alpha 1;mitogen-activated protein kinase kinase 7 2665 336 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1023.[MT7]-TESPR.2b2_1.heavy 367.202 / 375.2 5433.0 12.470149993896484 34 18 2 8 6 34.4925128513079 2.899179901188561 0.019500732421875 5 0.9899322487977488 12.289411714350482 5433.0 22.40412371134021 0.0 - - - - - - - 209.92592592592592 10 27 COL7A1;MAP2K7 collagen, type VII, alpha 1;mitogen-activated protein kinase kinase 7 2667 337 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1022.[MT7]-ALSQR.2b3_1.heavy 359.72 / 416.263 2725.0 19.04509925842285 33 11 10 10 2 0.7690171679243445 85.71400268553691 0.0 14 0.869367114938598 3.3766874413925647 2725.0 1.904912397063266 13.0 - - - - - - - 681.25 86 8 SAE1;GADD45A SUMO1 activating enzyme subunit 1;growth arrest and DNA-damage-inducible, alpha 2669 337 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1022.[MT7]-ALSQR.2y4_1.heavy 359.72 / 503.294 84306.0 19.04509925842285 33 11 10 10 2 0.7690171679243445 85.71400268553691 0.0 14 0.869367114938598 3.3766874413925647 84306.0 21.281192207124995 0.0 - - - - - - - 571.7857142857143 168 14 SAE1;GADD45A SUMO1 activating enzyme subunit 1;growth arrest and DNA-damage-inducible, alpha 2671 337 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1022.[MT7]-ALSQR.2b4_1.heavy 359.72 / 544.321 852.0 19.04509925842285 33 11 10 10 2 0.7690171679243445 85.71400268553691 0.0 14 0.869367114938598 3.3766874413925647 852.0 0.38459491193737766 40.0 - - - - - - - 284.0 67 3 SAE1;GADD45A SUMO1 activating enzyme subunit 1;growth arrest and DNA-damage-inducible, alpha 2673 337 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1022.[MT7]-ALSQR.2y3_1.heavy 359.72 / 390.21 76471.0 19.04509925842285 33 11 10 10 2 0.7690171679243445 85.71400268553691 0.0 14 0.869367114938598 3.3766874413925647 76471.0 61.2666149328859 0.0 - - - - - - - 660.0 152 8 SAE1;GADD45A SUMO1 activating enzyme subunit 1;growth arrest and DNA-damage-inducible, alpha 2675 338 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1020.[MT7]-DIEQVPQQPTYVQALFDFDPQEDGELGFR.4b5_1.heavy 882.179 / 729.39 5157.0 45.373600006103516 39 17 10 2 10 3.108523602415971 32.169612584662104 0.08699798583984375 3 0.9780145923815341 8.307994562634338 5157.0 21.742017864580923 0.0 - - - - - - - 243.83333333333334 10 12 GRB2 growth factor receptor-bound protein 2 2677 338 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1020.[MT7]-DIEQVPQQPTYVQALFDFDPQEDGELGFR.4y10_1.heavy 882.179 / 1147.54 2787.0 45.373600006103516 39 17 10 2 10 3.108523602415971 32.169612584662104 0.08699798583984375 3 0.9780145923815341 8.307994562634338 2787.0 10.470312722805872 0.0 - - - - - - - 238.78571428571428 5 14 GRB2 growth factor receptor-bound protein 2 2679 338 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1020.[MT7]-DIEQVPQQPTYVQALFDFDPQEDGELGFR.4b3_1.heavy 882.179 / 502.263 N/A 45.373600006103516 39 17 10 2 10 3.108523602415971 32.169612584662104 0.08699798583984375 3 0.9780145923815341 8.307994562634338 1394.0 4.569749770214667 0.0 - - - - - - - 268.7857142857143 2 14 GRB2 growth factor receptor-bound protein 2 2681 338 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1020.[MT7]-DIEQVPQQPTYVQALFDFDPQEDGELGFR.4b4_1.heavy 882.179 / 630.321 5296.0 45.373600006103516 39 17 10 2 10 3.108523602415971 32.169612584662104 0.08699798583984375 3 0.9780145923815341 8.307994562634338 5296.0 9.878443296382319 0.0 - - - - - - - 294.22222222222223 10 9 GRB2 growth factor receptor-bound protein 2 2683 339 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1390.[MT7]-DVK[MT7]PSNILLDER.3b6_1.heavy 562.992 / 929.529 17927.0 27.88920021057129 43 13 10 10 10 1.582001073289342 50.368386005449395 0.0 3 0.9091286010632394 4.06259765162474 17927.0 74.51584337349398 0.0 - - - - - - - 332.0 35 4 MAP2K7 mitogen-activated protein kinase kinase 7 2685 339 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1390.[MT7]-DVK[MT7]PSNILLDER.3b3_1.heavy 562.992 / 631.402 19255.0 27.88920021057129 43 13 10 10 10 1.582001073289342 50.368386005449395 0.0 3 0.9091286010632394 4.06259765162474 19255.0 66.11656626506024 0.0 - - - - - - - 332.0 38 6 MAP2K7 mitogen-activated protein kinase kinase 7 2687 339 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1390.[MT7]-DVK[MT7]PSNILLDER.3y5_1.heavy 562.992 / 645.357 45482.0 27.88920021057129 43 13 10 10 10 1.582001073289342 50.368386005449395 0.0 3 0.9091286010632394 4.06259765162474 45482.0 165.7627108433735 0.0 - - - - - - - 332.0 90 4 MAP2K7 mitogen-activated protein kinase kinase 7 2689 339 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1390.[MT7]-DVK[MT7]PSNILLDER.3y9_1.heavy 562.992 / 1056.57 20915.0 27.88920021057129 43 13 10 10 10 1.582001073289342 50.368386005449395 0.0 3 0.9091286010632394 4.06259765162474 20915.0 77.69628514056225 0.0 - - - - - - - 332.0 41 2 MAP2K7 mitogen-activated protein kinase kinase 7 2691 340 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1394.[MT7]-IQLSSLIAAFQVTR.2y8_1.heavy 846.002 / 905.52 10114.0 45.76470184326172 43 13 10 10 10 1.453396960726633 45.183753654183114 0.0 3 0.9257143783441654 4.499705798482669 10114.0 47.6549373433584 0.0 - - - - - - - 217.63636363636363 20 11 RFC5 replication factor C (activator 1) 5, 36.5kDa 2693 340 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1394.[MT7]-IQLSSLIAAFQVTR.2y10_1.heavy 846.002 / 1105.64 7851.0 45.76470184326172 43 13 10 10 10 1.453396960726633 45.183753654183114 0.0 3 0.9257143783441654 4.499705798482669 7851.0 46.73214285714286 0.0 - - - - - - - 251.22222222222223 15 9 RFC5 replication factor C (activator 1) 5, 36.5kDa 2695 340 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1394.[MT7]-IQLSSLIAAFQVTR.2y11_1.heavy 846.002 / 1192.67 13041.0 45.76470184326172 43 13 10 10 10 1.453396960726633 45.183753654183114 0.0 3 0.9257143783441654 4.499705798482669 13041.0 69.42126315789474 0.0 - - - - - - - 249.375 26 8 RFC5 replication factor C (activator 1) 5, 36.5kDa 2697 340 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1394.[MT7]-IQLSSLIAAFQVTR.2y7_1.heavy 846.002 / 792.436 14904.0 45.76470184326172 43 13 10 10 10 1.453396960726633 45.183753654183114 0.0 3 0.9257143783441654 4.499705798482669 14904.0 52.294736842105266 0.0 - - - - - - - 253.9090909090909 29 11 RFC5 replication factor C (activator 1) 5, 36.5kDa 2699 341 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1252.[MT7]-SLLSGLLIK[MT7].2y5_1.heavy 616.415 / 687.489 11931.0 39.8223991394043 40 14 10 6 10 4.688385339578531 21.329304815416396 0.03399658203125 3 0.9308867825849986 4.667111886669487 11931.0 93.2969182389937 0.0 - - - - - - - 272.57142857142856 23 14 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2701 341 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1252.[MT7]-SLLSGLLIK[MT7].2y3_1.heavy 616.415 / 517.383 9386.0 39.8223991394043 40 14 10 6 10 4.688385339578531 21.329304815416396 0.03399658203125 3 0.9308867825849986 4.667111886669487 9386.0 18.884498263399983 0.0 - - - - - - - 344.5 18 12 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2703 341 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1252.[MT7]-SLLSGLLIK[MT7].2y6_1.heavy 616.415 / 774.521 23702.0 39.8223991394043 40 14 10 6 10 4.688385339578531 21.329304815416396 0.03399658203125 3 0.9308867825849986 4.667111886669487 23702.0 104.34842767295598 0.0 - - - - - - - 340.7142857142857 47 14 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2705 341 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1252.[MT7]-SLLSGLLIK[MT7].2b5_1.heavy 616.415 / 602.363 4931.0 39.8223991394043 40 14 10 6 10 4.688385339578531 21.329304815416396 0.03399658203125 3 0.9308867825849986 4.667111886669487 4931.0 8.270020964360588 1.0 - - - - - - - 265.0 10 12 AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 2707 342 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A964.[MT7]-TLQVFGIVPDGTLQLLK[MT7].3b6_1.heavy 710.764 / 790.458 96107.0 43.99155044555664 46 20 10 6 10 6.656237149027701 15.023503183718045 0.0399017333984375 3 0.9908682520053791 12.904891786378299 96107.0 160.5191539673863 0.0 - - - - - - - 279.5 192 10 SKP2 S-phase kinase-associated protein 2 (p45) 2709 342 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A964.[MT7]-TLQVFGIVPDGTLQLLK[MT7].3b4_1.heavy 710.764 / 586.368 67384.0 43.99155044555664 46 20 10 6 10 6.656237149027701 15.023503183718045 0.0399017333984375 3 0.9908682520053791 12.904891786378299 67384.0 215.63566065378933 0.0 - - - - - - - 259.0 134 6 SKP2 S-phase kinase-associated protein 2 (p45) 2711 342 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A964.[MT7]-TLQVFGIVPDGTLQLLK[MT7].3b7_1.heavy 710.764 / 903.542 39126.0 43.99155044555664 46 20 10 6 10 6.656237149027701 15.023503183718045 0.0399017333984375 3 0.9908682520053791 12.904891786378299 39126.0 150.0740632524038 0.0 - - - - - - - 213.375 78 8 SKP2 S-phase kinase-associated protein 2 (p45) 2713 342 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A964.[MT7]-TLQVFGIVPDGTLQLLK[MT7].3y9_1.heavy 710.764 / 1128.67 49839.0 43.99155044555664 46 20 10 6 10 6.656237149027701 15.023503183718045 0.0399017333984375 3 0.9908682520053791 12.904891786378299 49839.0 210.58581759656653 0.0 - - - - - - - 341.8 99 5 SKP2 S-phase kinase-associated protein 2 (p45) 2715 343 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1111.[MT7]-NSPEDK[MT7].2y4_1.heavy 489.261 / 632.337 61433.0 13.451399803161621 47 17 10 10 10 3.6289162808447513 27.556436208752018 0.0 3 0.9793572533735031 8.574892798960343 61433.0 437.37625 0.0 - - - - - - - 221.78571428571428 122 14 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2717 343 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1111.[MT7]-NSPEDK[MT7].2y5_1.heavy 489.261 / 719.369 43026.0 13.451399803161621 47 17 10 10 10 3.6289162808447513 27.556436208752018 0.0 3 0.9793572533735031 8.574892798960343 43026.0 84.18130434782609 0.0 - - - - - - - 739.2857142857143 86 7 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2719 343 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1111.[MT7]-NSPEDK[MT7].2y3_1.heavy 489.261 / 535.284 8053.0 13.451399803161621 47 17 10 10 10 3.6289162808447513 27.556436208752018 0.0 3 0.9793572533735031 8.574892798960343 8053.0 21.00782608695652 0.0 - - - - - - - 214.66666666666666 16 15 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2721 343 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1111.[MT7]-NSPEDK[MT7].2b5_1.heavy 489.261 / 687.307 42336.0 13.451399803161621 47 17 10 10 10 3.6289162808447513 27.556436208752018 0.0 3 0.9793572533735031 8.574892798960343 42336.0 35.943632394509734 0.0 - - - - - - - 718.75 84 8 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2723 344 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A965.[MT7]-TLQVFGIVPDGTLQLLK[MT7].4b4_1.heavy 533.325 / 586.368 N/A N/A - - - - - - - - - 0.0 - - - - - - - SKP2 S-phase kinase-associated protein 2 (p45) 2725 344 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A965.[MT7]-TLQVFGIVPDGTLQLLK[MT7].4b5_1.heavy 533.325 / 733.437 N/A N/A - - - - - - - - - 0.0 - - - - - - - SKP2 S-phase kinase-associated protein 2 (p45) 2727 344 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A965.[MT7]-TLQVFGIVPDGTLQLLK[MT7].4y3_1.heavy 533.325 / 517.383 N/A N/A - - - - - - - - - 0.0 - - - - - - - SKP2 S-phase kinase-associated protein 2 (p45) 2729 344 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A965.[MT7]-TLQVFGIVPDGTLQLLK[MT7].4b6_1.heavy 533.325 / 790.458 N/A N/A - - - - - - - - - 0.0 - - - - - - - SKP2 S-phase kinase-associated protein 2 (p45) 2731 345 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10616.[MT7]-RAPTTATQR.3y6_1.heavy 382.555 / 677.358 16512.0 13.288399696350098 50 20 10 10 10 18.63556307533406 5.366084169056288 0.0 3 0.9991102808662291 41.37173167581656 16512.0 89.31929824561404 0.0 - - - - - - - 217.63636363636363 33 11 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 2733 345 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10616.[MT7]-RAPTTATQR.3y3_1.heavy 382.555 / 404.225 91672.0 13.288399696350098 50 20 10 10 10 18.63556307533406 5.366084169056288 0.0 3 0.9991102808662291 41.37173167581656 91672.0 63.87242444667182 0.0 - - - - - - - 683.0 183 8 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 2735 345 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10616.[MT7]-RAPTTATQR.3y4_1.heavy 382.555 / 475.262 99302.0 13.288399696350098 50 20 10 10 10 18.63556307533406 5.366084169056288 0.0 3 0.9991102808662291 41.37173167581656 99302.0 142.71936927472484 0.0 - - - - - - - 671.6 198 10 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 2737 345 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10616.[MT7]-RAPTTATQR.3y5_1.heavy 382.555 / 576.31 67871.0 13.288399696350098 50 20 10 10 10 18.63556307533406 5.366084169056288 0.0 3 0.9991102808662291 41.37173167581656 67871.0 116.73340994584427 0.0 - - - - - - - 281.6470588235294 135 17 UBE2J2 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) 2739 346 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1110.[MT7]-IAFTTK[MT7].2y4_1.heavy 484.805 / 640.379 103529.0 26.03660011291504 47 17 10 10 10 2.4574917848928846 32.03342563585572 0.0 3 0.9709093286266796 7.218168411425975 103529.0 355.1156021505376 0.0 - - - - - - - 310.0 207 4 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2741 346 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1110.[MT7]-IAFTTK[MT7].2y5_1.heavy 484.805 / 711.416 223485.0 26.03660011291504 47 17 10 10 10 2.4574917848928846 32.03342563585572 0.0 3 0.9709093286266796 7.218168411425975 223485.0 398.307943548387 0.0 - - - - - - - 310.0 446 1 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2743 346 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1110.[MT7]-IAFTTK[MT7].2b4_1.heavy 484.805 / 577.347 8989.0 26.03660011291504 47 17 10 10 10 2.4574917848928846 32.03342563585572 0.0 3 0.9709093286266796 7.218168411425975 8989.0 38.565709677419356 0.0 - - - - - - - 752.8571428571429 17 7 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2745 346 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1110.[MT7]-IAFTTK[MT7].2y3_1.heavy 484.805 / 493.31 85861.0 26.03660011291504 47 17 10 10 10 2.4574917848928846 32.03342563585572 0.0 3 0.9709093286266796 7.218168411425975 85861.0 122.65857142857143 0.0 - - - - - - - 310.0 171 4 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2747 347 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1246.[MT7]-SVQEVLQK[MT7].2y4_1.heavy 609.868 / 631.426 30772.0 25.26219940185547 48 18 10 10 10 4.191460430462181 23.858032697441754 0.0 3 0.9814772157734217 9.053918605806246 30772.0 72.04909104116726 0.0 - - - - - - - 290.0 61 2 ORC4 origin recognition complex, subunit 4 2749 347 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1246.[MT7]-SVQEVLQK[MT7].2b4_1.heavy 609.868 / 588.311 44127.0 25.26219940185547 48 18 10 10 10 4.191460430462181 23.858032697441754 0.0 3 0.9814772157734217 9.053918605806246 44127.0 116.48353956419413 0.0 - - - - - - - 663.8571428571429 88 7 ORC4 origin recognition complex, subunit 4 2751 347 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1246.[MT7]-SVQEVLQK[MT7].2y3_1.heavy 609.868 / 532.357 42094.0 25.26219940185547 48 18 10 10 10 4.191460430462181 23.858032697441754 0.0 3 0.9814772157734217 9.053918605806246 42094.0 84.05807504658725 0.0 - - - - - - - 290.0 84 2 ORC4 origin recognition complex, subunit 4 2753 347 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1246.[MT7]-SVQEVLQK[MT7].2b5_1.heavy 609.868 / 687.379 33385.0 25.26219940185547 48 18 10 10 10 4.191460430462181 23.858032697441754 0.0 3 0.9814772157734217 9.053918605806246 33385.0 53.66130884041331 0.0 - - - - - - - 290.0 66 4 ORC4 origin recognition complex, subunit 4 2755 348 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A962.[MT7]-HLELFLQQLQEVVVK[MT7].3b6_1.heavy 704.42 / 897.531 9725.0 42.82919883728027 46 20 10 6 10 7.912672843084411 12.637954580341194 0.038799285888671875 3 0.9915391988807725 13.407566008831324 9725.0 65.14368188715684 0.0 - - - - - - - 274.77777777777777 19 9 STAG3 stromal antigen 3 2757 348 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A962.[MT7]-HLELFLQQLQEVVVK[MT7].3b4_1.heavy 704.42 / 637.379 17966.0 42.82919883728027 46 20 10 6 10 7.912672843084411 12.637954580341194 0.038799285888671875 3 0.9915391988807725 13.407566008831324 17966.0 120.4083376923481 0.0 - - - - - - - 214.5 35 10 STAG3 stromal antigen 3 2759 348 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A962.[MT7]-HLELFLQQLQEVVVK[MT7].3b5_1.heavy 704.42 / 784.447 22251.0 42.82919883728027 46 20 10 6 10 7.912672843084411 12.637954580341194 0.038799285888671875 3 0.9915391988807725 13.407566008831324 22251.0 82.95804393786193 0.0 - - - - - - - 282.7142857142857 44 7 STAG3 stromal antigen 3 2761 348 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A962.[MT7]-HLELFLQQLQEVVVK[MT7].3b3_1.heavy 704.42 / 524.295 10549.0 42.82919883728027 46 20 10 6 10 7.912672843084411 12.637954580341194 0.038799285888671875 3 0.9915391988807725 13.407566008831324 10549.0 36.606074551427845 0.0 - - - - - - - 259.2857142857143 21 7 STAG3 stromal antigen 3 2763 349 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10613.[MT7]-LIFPR.2b3_1.heavy 395.259 / 518.346 29051.0 31.43280029296875 48 18 10 10 10 5.355200302464004 18.6734378458241 0.0 3 0.988376613378769 11.436008361409725 29051.0 94.04902738061166 1.0 - - - - - - - 296.0 68 5 UBE2J2;DNAH14 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast);dynein, axonemal, heavy chain 14 2765 349 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10613.[MT7]-LIFPR.2y4_1.heavy 395.259 / 532.324 168082.0 31.43280029296875 48 18 10 10 10 5.355200302464004 18.6734378458241 0.0 3 0.988376613378769 11.436008361409725 168082.0 581.5823288830999 0.0 - - - - - - - 296.0 336 3 UBE2J2;DNAH14 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast);dynein, axonemal, heavy chain 14 2767 349 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10613.[MT7]-LIFPR.2y3_1.heavy 395.259 / 419.24 50988.0 31.43280029296875 48 18 10 10 10 5.355200302464004 18.6734378458241 0.0 3 0.988376613378769 11.436008361409725 50988.0 123.81571669477235 0.0 - - - - - - - 296.0 101 2 UBE2J2;DNAH14 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast);dynein, axonemal, heavy chain 14 2769 349 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10613.[MT7]-LIFPR.2b1_1.heavy 395.259 / 258.193 52470.0 31.43280029296875 48 18 10 10 10 5.355200302464004 18.6734378458241 0.0 3 0.988376613378769 11.436008361409725 52470.0 258.6642341962536 0.0 - - - - - - - 296.0 104 3 UBE2J2;DNAH14 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast);dynein, axonemal, heavy chain 14 2771 350 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1113.[MT7]-EWNLK[MT7].2b3_1.heavy 489.287 / 574.274 30736.0 26.353599548339844 46 16 10 10 10 3.271814859586156 30.564076603236884 0.0 3 0.9646191792183381 6.541683912106823 30736.0 47.62670986141535 0.0 - - - - - - - 716.7142857142857 61 7 UBE2U ubiquitin-conjugating enzyme E2U (putative) 2773 350 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1113.[MT7]-EWNLK[MT7].2y4_1.heavy 489.287 / 704.421 92523.0 26.353599548339844 46 16 10 10 10 3.271814859586156 30.564076603236884 0.0 3 0.9646191792183381 6.541683912106823 92523.0 137.48395629473808 0.0 - - - - - - - 716.7142857142857 185 7 UBE2U ubiquitin-conjugating enzyme E2U (putative) 2775 350 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1113.[MT7]-EWNLK[MT7].2b4_1.heavy 489.287 / 687.358 21014.0 26.353599548339844 46 16 10 10 10 3.271814859586156 30.564076603236884 0.0 3 0.9646191792183381 6.541683912106823 21014.0 34.16729011689692 0.0 - - - - - - - 314.0 42 6 UBE2U ubiquitin-conjugating enzyme E2U (putative) 2777 350 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1113.[MT7]-EWNLK[MT7].2y3_1.heavy 489.287 / 518.342 53318.0 26.353599548339844 46 16 10 10 10 3.271814859586156 30.564076603236884 0.0 3 0.9646191792183381 6.541683912106823 53318.0 109.68755871008689 0.0 - - - - - - - 314.0 106 4 UBE2U ubiquitin-conjugating enzyme E2U (putative) 2779 351 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1249.[MT7]-FIGATANFSR.2y8_1.heavy 614.334 / 823.406 191681.0 29.45549964904785 50 20 10 10 10 95.3747030927334 1.0484960556340543 0.0 3 0.9999676361462432 216.93572793276334 191681.0 91.04516986695981 0.0 - - - - - - - 746.0 383 4 RNASEH2C ribonuclease H2, subunit C 2781 351 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1249.[MT7]-FIGATANFSR.2b4_1.heavy 614.334 / 533.32 41122.0 29.45549964904785 50 20 10 10 10 95.3747030927334 1.0484960556340543 0.0 3 0.9999676361462432 216.93572793276334 41122.0 19.0514397763105 0.0 - - - - - - - 332.0 82 1 RNASEH2C ribonuclease H2, subunit C 2783 351 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1249.[MT7]-FIGATANFSR.2y9_1.heavy 614.334 / 936.49 168136.0 29.45549964904785 50 20 10 10 10 95.3747030927334 1.0484960556340543 0.0 3 0.9999676361462432 216.93572793276334 168136.0 102.46783412677422 0.0 - - - - - - - 332.0 336 2 RNASEH2C ribonuclease H2, subunit C 2785 351 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1249.[MT7]-FIGATANFSR.2y7_1.heavy 614.334 / 766.384 32500.0 29.45549964904785 50 20 10 10 10 95.3747030927334 1.0484960556340543 0.0 3 0.9999676361462432 216.93572793276334 32500.0 44.56579537064903 0.0 - - - - - - - 332.0 65 1 RNASEH2C ribonuclease H2, subunit C 2787 352 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1112.[MT7]-ETNTPK[MT7].2y4_1.heavy 489.279 / 603.358 9107.0 13.62090015411377 44 18 6 10 10 10.082629460999472 9.918047706385432 0.0 3 0.9853825432779556 10.195206215699075 9107.0 25.008934789490347 0.0 - - - - - - - 223.47368421052633 18 19 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 2789 352 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1112.[MT7]-ETNTPK[MT7].2y5_1.heavy 489.279 / 704.406 29384.0 13.62090015411377 44 18 6 10 10 10.082629460999472 9.918047706385432 0.0 3 0.9853825432779556 10.195206215699075 29384.0 23.856880705494717 0.0 - - - - - - - 746.0 58 7 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 2791 352 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1112.[MT7]-ETNTPK[MT7].2b4_1.heavy 489.279 / 590.29 13599.0 13.62090015411377 44 18 6 10 10 10.082629460999472 9.918047706385432 0.0 3 0.9853825432779556 10.195206215699075 13599.0 35.15884232047023 0.0 - - - - - - - 242.64285714285714 27 14 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 2793 352 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1112.[MT7]-ETNTPK[MT7].2b5_1.heavy 489.279 / 687.343 3157.0 13.62090015411377 44 18 6 10 10 10.082629460999472 9.918047706385432 0.0 3 0.9853825432779556 10.195206215699075 3157.0 -0.3735857700253883 1.0 - - - - - - - 1248.857142857143 84 7 UBE2E1 ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast) 2795 353 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1115.[MT7]-EWTQK[MT7].2b3_1.heavy 490.276 / 561.279 6319.0 20.220200538635254 45 20 10 5 10 12.168367842464052 8.218029015446852 0.04120063781738281 3 0.9959492411117693 19.38418125574665 6319.0 35.71208483524896 0.0 - - - - - - - 289.75 12 8 UBE2D4;UBE2D1;UBE2D2;UBE2D3 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 2797 353 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1115.[MT7]-EWTQK[MT7].2y4_1.heavy 490.276 / 706.4 57292.0 20.220200538635254 45 20 10 5 10 12.168367842464052 8.218029015446852 0.04120063781738281 3 0.9959492411117693 19.38418125574665 57292.0 60.93012700296735 0.0 - - - - - - - 281.0 114 3 UBE2D4;UBE2D1;UBE2D2;UBE2D3 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 2799 353 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1115.[MT7]-EWTQK[MT7].2b4_1.heavy 490.276 / 689.338 10321.0 20.220200538635254 45 20 10 5 10 12.168367842464052 8.218029015446852 0.04120063781738281 3 0.9959492411117693 19.38418125574665 10321.0 17.635758872295053 0.0 - - - - - - - 782.7142857142857 20 7 UBE2D4;UBE2D1;UBE2D2;UBE2D3 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 2801 353 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1115.[MT7]-EWTQK[MT7].2y3_1.heavy 490.276 / 520.321 39810.0 20.220200538635254 45 20 10 5 10 12.168367842464052 8.218029015446852 0.04120063781738281 3 0.9959492411117693 19.38418125574665 39810.0 37.79617295195884 0.0 - - - - - - - 306.45454545454544 79 11 UBE2D4;UBE2D1;UBE2D2;UBE2D3 ubiquitin-conjugating enzyme E2D 4 (putative);ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast);ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) 2803 354 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1019.[MT7]-TILLSIQSLLGEPNIDSPLNTHAAELWK[MT7].4y5_1.heavy 841.221 / 790.458 8590.0 49.2067756652832 46 20 10 6 10 9.507765754511036 10.517718103493893 0.0381011962890625 3 0.9952123553407106 17.82904134584709 8590.0 51.92693693693694 0.0 - - - - - - - 226.93333333333334 17 15 UBE2C ubiquitin-conjugating enzyme E2C 2805 354 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1019.[MT7]-TILLSIQSLLGEPNIDSPLNTHAAELWK[MT7].4b4_1.heavy 841.221 / 585.409 21846.0 49.2067756652832 46 20 10 6 10 9.507765754511036 10.517718103493893 0.0381011962890625 3 0.9952123553407106 17.82904134584709 21846.0 38.48243484560932 0.0 - - - - - - - 798.2222222222222 43 9 UBE2C ubiquitin-conjugating enzyme E2C 2807 354 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1019.[MT7]-TILLSIQSLLGEPNIDSPLNTHAAELWK[MT7].4b5_1.heavy 841.221 / 672.441 20217.0 49.2067756652832 46 20 10 6 10 9.507765754511036 10.517718103493893 0.0381011962890625 3 0.9952123553407106 17.82904134584709 20217.0 45.04406252976047 0.0 - - - - - - - 674.6666666666666 40 9 UBE2C ubiquitin-conjugating enzyme E2C 2809 354 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1019.[MT7]-TILLSIQSLLGEPNIDSPLNTHAAELWK[MT7].4y6_1.heavy 841.221 / 861.495 8220.0 49.2067756652832 46 20 10 6 10 9.507765754511036 10.517718103493893 0.0381011962890625 3 0.9952123553407106 17.82904134584709 8220.0 17.453456259998315 0.0 - - - - - - - 623.8571428571429 16 7 UBE2C ubiquitin-conjugating enzyme E2C 2811 355 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1117.[MT7]-AIQDEIR.2y5_1.heavy 494.781 / 660.331 47062.0 22.98870086669922 45 15 10 10 10 1.7670172134633233 45.12294602597624 0.0 3 0.9585860757627596 6.043365291371143 47062.0 19.69523300700343 1.0 - - - - - - - 400.0 94 3 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 2813 355 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1117.[MT7]-AIQDEIR.2b4_1.heavy 494.781 / 572.316 98446.0 22.98870086669922 45 15 10 10 10 1.7670172134633233 45.12294602597624 0.0 3 0.9585860757627596 6.043365291371143 98446.0 55.95635855792763 0.0 - - - - - - - 240.0 196 1 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 2815 355 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1117.[MT7]-AIQDEIR.2y6_1.heavy 494.781 / 773.415 68672.0 22.98870086669922 45 15 10 10 10 1.7670172134633233 45.12294602597624 0.0 3 0.9585860757627596 6.043365291371143 68672.0 22.48030877682416 1.0 - - - - - - - 300.0 137 4 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 2817 355 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1117.[MT7]-AIQDEIR.2b5_1.heavy 494.781 / 701.359 92203.0 22.98870086669922 45 15 10 10 10 1.7670172134633233 45.12294602597624 0.0 3 0.9585860757627596 6.043365291371143 92203.0 162.0621908479045 0.0 - - - - - - - 320.0 184 9 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 2819 356 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1245.[MT7]-FLAGVPTPK[MT7].2y4_1.heavy 609.378 / 586.368 243545.0 30.532100677490234 40 10 10 10 10 0.707614050458425 86.90781124597129 0.0 3 0.8401128980482345 3.0443293901559083 243545.0 305.4746930471157 0.0 - - - - - - - 318.0 487 1 CCND2 cyclin D2 2821 356 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1245.[MT7]-FLAGVPTPK[MT7].2b4_1.heavy 609.378 / 533.32 133074.0 30.532100677490234 40 10 10 10 10 0.707614050458425 86.90781124597129 0.0 3 0.8401128980482345 3.0443293901559083 133074.0 92.47452731857166 1.0 - - - - - - - 796.0 266 2 CCND2 cyclin D2 2823 356 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1245.[MT7]-FLAGVPTPK[MT7].2b5_1.heavy 609.378 / 632.389 181784.0 30.532100677490234 40 10 10 10 10 0.707614050458425 86.90781124597129 0.0 3 0.8401128980482345 3.0443293901559083 181784.0 155.7695357766143 0.0 - - - - - - - 743.0 363 3 CCND2 cyclin D2 2825 356 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1245.[MT7]-FLAGVPTPK[MT7].2y7_1.heavy 609.378 / 813.495 48072.0 30.532100677490234 40 10 10 10 10 0.707614050458425 86.90781124597129 0.0 3 0.8401128980482345 3.0443293901559083 48072.0 196.92155258322632 0.0 - - - - - - - 318.0 96 3 CCND2 cyclin D2 2827 357 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1116.[MT7]-SHNSLQR.2y4_1.heavy 493.268 / 503.294 2031.0 13.451399803161621 46 16 10 10 10 4.196042518553721 23.831979670803644 0.0 3 0.9612790931870259 6.251413094317627 2031.0 5.670810640237487 1.0 - - - - - - - 247.92307692307693 4 13 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2829 357 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1116.[MT7]-SHNSLQR.2y5_1.heavy 493.268 / 617.336 4063.0 13.451399803161621 46 16 10 10 10 4.196042518553721 23.831979670803644 0.0 3 0.9612790931870259 6.251413094317627 4063.0 7.939664804469275 0.0 - - - - - - - 186.3125 8 16 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2831 357 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1116.[MT7]-SHNSLQR.2b4_1.heavy 493.268 / 570.275 597.0 13.451399803161621 46 16 10 10 10 4.196042518553721 23.831979670803644 0.0 3 0.9612790931870259 6.251413094317627 597.0 1.0842874173114234 15.0 - - - - - - - 251.31578947368422 3 19 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2833 357 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1116.[MT7]-SHNSLQR.2y6_1.heavy 493.268 / 754.396 6333.0 13.451399803161621 46 16 10 10 10 4.196042518553721 23.831979670803644 0.0 3 0.9612790931870259 6.251413094317627 6333.0 21.198326359832635 0.0 - - - - - - - 184.95 12 20 PRIM1 primase, DNA, polypeptide 1 (49kDa) 2835 358 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1244.[MT7]-ENLAILEK[MT7].2b3_1.heavy 609.371 / 501.279 88597.0 29.609600067138672 44 18 8 10 8 3.855619695461208 25.936167957052106 0.0 4 0.9866361533620894 10.663794938301814 88597.0 85.91483837150446 0.0 - - - - - - - 331.0 177 1 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 2837 358 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1244.[MT7]-ENLAILEK[MT7].2y5_1.heavy 609.371 / 717.463 92234.0 29.609600067138672 44 18 8 10 8 3.855619695461208 25.936167957052106 0.0 4 0.9866361533620894 10.663794938301814 92234.0 160.4554911530619 0.0 - - - - - - - 802.8571428571429 184 7 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 2839 358 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1244.[MT7]-ENLAILEK[MT7].2b4_1.heavy 609.371 / 572.316 98184.0 29.609600067138672 44 18 8 10 8 3.855619695461208 25.936167957052106 0.0 4 0.9866361533620894 10.663794938301814 98184.0 33.59421974795344 0.0 - - - - - - - 771.3333333333334 196 3 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 2841 358 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1244.[MT7]-ENLAILEK[MT7].2y3_1.heavy 609.371 / 533.341 108763.0 29.609600067138672 44 18 8 10 8 3.855619695461208 25.936167957052106 0.0 4 0.9866361533620894 10.663794938301814 108763.0 202.91052402579183 2.0 - - - - - - - 331.0 290 3 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 2843 359 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1119.[MT7]-VADFGLAR.2y5_1.heavy 496.786 / 563.33 354667.0 29.2455997467041 50 20 10 10 10 11.718673444587354 8.533389079647765 0.0 3 0.9987274416047697 34.592141071429886 354667.0 338.5984392641657 0.0 - - - - - - - 333.0 709 1 FRK;MET;MST1R;SRC;SRMS fyn-related kinase;met proto-oncogene (hepatocyte growth factor receptor);macrophage stimulating 1 receptor (c-met-related tyrosine kinase);v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites 2845 359 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1119.[MT7]-VADFGLAR.2y6_1.heavy 496.786 / 678.357 57667.0 29.2455997467041 50 20 10 10 10 11.718673444587354 8.533389079647765 0.0 3 0.9987274416047697 34.592141071429886 57667.0 241.4546480363422 0.0 - - - - - - - 333.0 115 4 FRK;MET;MST1R;SRC;SRMS fyn-related kinase;met proto-oncogene (hepatocyte growth factor receptor);macrophage stimulating 1 receptor (c-met-related tyrosine kinase);v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites 2847 359 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1119.[MT7]-VADFGLAR.2b5_1.heavy 496.786 / 634.332 99667.0 29.2455997467041 50 20 10 10 10 11.718673444587354 8.533389079647765 0.0 3 0.9987274416047697 34.592141071429886 99667.0 204.28154428274766 0.0 - - - - - - - 333.0 199 5 FRK;MET;MST1R;SRC;SRMS fyn-related kinase;met proto-oncogene (hepatocyte growth factor receptor);macrophage stimulating 1 receptor (c-met-related tyrosine kinase);v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites 2849 359 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1119.[MT7]-VADFGLAR.2y7_1.heavy 496.786 / 749.394 289333.0 29.2455997467041 50 20 10 10 10 11.718673444587354 8.533389079647765 0.0 3 0.9987274416047697 34.592141071429886 289333.0 270.5773626931733 0.0 - - - - - - - 667.0 578 1 FRK;MET;MST1R;SRC;SRMS fyn-related kinase;met proto-oncogene (hepatocyte growth factor receptor);macrophage stimulating 1 receptor (c-met-related tyrosine kinase);v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian);src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites 2851 360 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1386.[MT7]-GELAPELGEEPQPR.3y7_1.heavy 555.957 / 812.39 25927.0 26.91080093383789 50 20 10 10 10 51.362418442235246 1.9469488204194478 0.0 3 0.999595878905196 61.389201236929125 25927.0 19.410169973752367 1.0 - - - - - - - 324.0 53 5 POLD4 polymerase (DNA-directed), delta 4 2853 360 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1386.[MT7]-GELAPELGEEPQPR.3b6_1.heavy 555.957 / 741.39 24306.0 26.91080093383789 50 20 10 10 10 51.362418442235246 1.9469488204194478 0.0 3 0.999595878905196 61.389201236929125 24306.0 61.97779938271605 0.0 - - - - - - - 324.0 48 6 POLD4 polymerase (DNA-directed), delta 4 2855 360 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1386.[MT7]-GELAPELGEEPQPR.3b4_1.heavy 555.957 / 515.295 75835.0 26.91080093383789 50 20 10 10 10 51.362418442235246 1.9469488204194478 0.0 3 0.999595878905196 61.389201236929125 75835.0 82.30206354723481 0.0 - - - - - - - 324.0 151 6 POLD4 polymerase (DNA-directed), delta 4 2857 360 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1386.[MT7]-GELAPELGEEPQPR.3y5_1.heavy 555.957 / 626.326 12315.0 26.91080093383789 50 20 10 10 10 51.362418442235246 1.9469488204194478 0.0 3 0.999595878905196 61.389201236929125 12315.0 52.45277777777778 0.0 - - - - - - - 324.0 24 4 POLD4 polymerase (DNA-directed), delta 4 2859 361 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1015.[MT7]-TVLLSLQALLAAAEPDDPQDAVVANQYK[MT7].4b8_1.heavy 811.194 / 970.605 20582.0 50.172298431396484 47 17 10 10 10 4.86546733112694 20.55301026486144 0.0 3 0.9730611569149458 7.502277067418197 20582.0 29.357172622079908 0.0 - - - - - - - 272.27272727272725 41 11 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2861 361 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1015.[MT7]-TVLLSLQALLAAAEPDDPQDAVVANQYK[MT7].4y10_2.heavy 811.194 / 640.342 13074.0 50.172298431396484 47 17 10 10 10 4.86546733112694 20.55301026486144 0.0 3 0.9730611569149458 7.502277067418197 13074.0 51.85638143300798 0.0 - - - - - - - 690.1428571428571 26 7 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2863 361 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1015.[MT7]-TVLLSLQALLAAAEPDDPQDAVVANQYK[MT7].4b4_1.heavy 811.194 / 571.394 15804.0 50.172298431396484 47 17 10 10 10 4.86546733112694 20.55301026486144 0.0 3 0.9730611569149458 7.502277067418197 15804.0 47.71378169446716 0.0 - - - - - - - 238.6153846153846 31 13 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2865 361 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1015.[MT7]-TVLLSLQALLAAAEPDDPQDAVVANQYK[MT7].4b5_1.heavy 811.194 / 658.426 13861.0 50.172298431396484 47 17 10 10 10 4.86546733112694 20.55301026486144 0.0 3 0.9730611569149458 7.502277067418197 13861.0 15.9263352425594 0.0 - - - - - - - 299.0769230769231 27 13 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 2867 362 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1385.[MT7]-TALLAIIGFMPTK[MT7].3y6_1.heavy 555.34 / 824.446 6872.0 46.8297004699707 47 17 10 10 10 2.224775954320408 34.96131820791288 0.0 3 0.9740627386374289 7.64640177424752 6872.0 71.75993933265926 0.0 - - - - - - - 153.11111111111111 13 9 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 2869 362 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1385.[MT7]-TALLAIIGFMPTK[MT7].3b6_1.heavy 555.34 / 727.483 11911.0 46.8297004699707 47 17 10 10 10 2.224775954320408 34.96131820791288 0.0 3 0.9740627386374289 7.64640177424752 11911.0 51.09833515283842 0.0 - - - - - - - 286.5 23 12 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 2871 362 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1385.[MT7]-TALLAIIGFMPTK[MT7].3b4_1.heavy 555.34 / 543.362 9277.0 46.8297004699707 47 17 10 10 10 2.224775954320408 34.96131820791288 0.0 3 0.9740627386374289 7.64640177424752 9277.0 113.09591228403265 0.0 - - - - - - - 229.27272727272728 18 11 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 2873 362 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1385.[MT7]-TALLAIIGFMPTK[MT7].3b5_1.heavy 555.34 / 614.399 26228.0 46.8297004699707 47 17 10 10 10 2.224775954320408 34.96131820791288 0.0 3 0.9740627386374289 7.64640177424752 26228.0 144.8639534883721 0.0 - - - - - - - 286.6 52 10 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 2875 363 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1018.[MT7]-VLLSIC[CAM]SLLC[CAM]DPNPDDPLVPDIAQIYK[MT7].4y5_1.heavy 839.949 / 766.458 4909.0 48.143999099731445 41 15 10 6 10 1.4252393522500588 48.85881018439959 0.035999298095703125 3 0.9501697157896041 5.505484753774383 4909.0 8.533401869158878 1.0 - - - - - - - 200.5625 9 16 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2877 363 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1018.[MT7]-VLLSIC[CAM]SLLC[CAM]DPNPDDPLVPDIAQIYK[MT7].4y8_1.heavy 839.949 / 1091.62 11245.0 48.143999099731445 41 15 10 6 10 1.4252393522500588 48.85881018439959 0.035999298095703125 3 0.9501697157896041 5.505484753774383 11245.0 41.58450748012209 0.0 - - - - - - - 260.6923076923077 22 13 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2879 363 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1018.[MT7]-VLLSIC[CAM]SLLC[CAM]DPNPDDPLVPDIAQIYK[MT7].4b4_1.heavy 839.949 / 557.378 5801.0 48.143999099731445 41 15 10 6 10 1.4252393522500588 48.85881018439959 0.035999298095703125 3 0.9501697157896041 5.505484753774383 5801.0 20.52357381165919 0.0 - - - - - - - 227.0 11 11 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2881 363 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1018.[MT7]-VLLSIC[CAM]SLLC[CAM]DPNPDDPLVPDIAQIYK[MT7].4y3_1.heavy 839.949 / 567.362 7497.0 48.143999099731445 41 15 10 6 10 1.4252393522500588 48.85881018439959 0.035999298095703125 3 0.9501697157896041 5.505484753774383 7497.0 25.587040358744396 0.0 - - - - - - - 255.6 14 15 UBE2D1 ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) 2883 364 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1388.[MT7]-LQELLQDC[CAM]GWK[MT7].3y3_1.heavy 559.967 / 534.316 60101.0 36.794898986816406 45 15 10 10 10 2.2119386419007068 37.21706525546685 0.0 3 0.9518705172009283 5.602725322668888 60101.0 45.328114673287736 0.0 - - - - - - - 669.8888888888889 120 9 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2885 364 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1388.[MT7]-LQELLQDC[CAM]GWK[MT7].3b4_1.heavy 559.967 / 628.379 83522.0 36.794898986816406 45 15 10 10 10 2.2119386419007068 37.21706525546685 0.0 3 0.9518705172009283 5.602725322668888 83522.0 98.77280844086161 0.0 - - - - - - - 669.8888888888889 167 9 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2887 364 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1388.[MT7]-LQELLQDC[CAM]GWK[MT7].3b3_1.heavy 559.967 / 515.295 68540.0 36.794898986816406 45 15 10 10 10 2.2119386419007068 37.21706525546685 0.0 3 0.9518705172009283 5.602725322668888 68540.0 75.1912515058225 0.0 - - - - - - - 708.1111111111111 137 9 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2889 364 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1388.[MT7]-LQELLQDC[CAM]GWK[MT7].3y5_1.heavy 559.967 / 809.373 30998.0 36.794898986816406 45 15 10 10 10 2.2119386419007068 37.21706525546685 0.0 3 0.9518705172009283 5.602725322668888 30998.0 81.08446251085593 0.0 - - - - - - - 248.44444444444446 61 9 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 2891 365 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1387.[MT7]-GELAPELGEEPQPR.2y8_1.heavy 833.432 / 925.474 3237.0 26.934450149536133 33 8 10 5 10 0.9208904628945044 67.32691341747129 0.047298431396484375 3 0.753425455417807 2.4323786030848864 3237.0 5.6648234233259105 0.0 - - - - - - - 324.0 6 1 POLD4 polymerase (DNA-directed), delta 4 2893 365 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1387.[MT7]-GELAPELGEEPQPR.2b4_1.heavy 833.432 / 515.295 61825.0 26.934450149536133 33 8 10 5 10 0.9208904628945044 67.32691341747129 0.047298431396484375 3 0.753425455417807 2.4323786030848864 61825.0 85.37908248660102 0.0 - - - - - - - 324.0 123 1 POLD4 polymerase (DNA-directed), delta 4 2895 365 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1387.[MT7]-GELAPELGEEPQPR.2y10_1.heavy 833.432 / 1151.57 25248.0 26.934450149536133 33 8 10 5 10 0.9208904628945044 67.32691341747129 0.047298431396484375 3 0.753425455417807 2.4323786030848864 25248.0 76.19013515885553 1.0 - - - - - - - 324.0 56 3 POLD4 polymerase (DNA-directed), delta 4 2897 365 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1387.[MT7]-GELAPELGEEPQPR.2y11_1.heavy 833.432 / 1222.61 9711.0 26.934450149536133 33 8 10 5 10 0.9208904628945044 67.32691341747129 0.047298431396484375 3 0.753425455417807 2.4323786030848864 9711.0 15.201167460704395 1.0 - - - - - - - 324.0 19 2 POLD4 polymerase (DNA-directed), delta 4 2899 366 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A968.[MT7]-TC[CAM]DISFSDPDDLLNFK[MT7].3y3_1.heavy 725.689 / 552.326 60900.0 38.75149917602539 45 15 10 10 10 2.2394481150748216 37.10982587085869 0.0 3 0.9580771717637424 6.006314202228542 60900.0 45.49521502640327 0.0 - - - - - - - 1304.857142857143 121 7 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2901 366 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A968.[MT7]-TC[CAM]DISFSDPDDLLNFK[MT7].3y4_1.heavy 725.689 / 665.41 39745.0 38.75149917602539 45 15 10 10 10 2.2394481150748216 37.10982587085869 0.0 3 0.9580771717637424 6.006314202228542 39745.0 48.22339091145849 0.0 - - - - - - - 1190.5714285714287 79 7 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2903 366 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A968.[MT7]-TC[CAM]DISFSDPDDLLNFK[MT7].3b3_1.heavy 725.689 / 521.215 52085.0 38.75149917602539 45 15 10 10 10 2.2394481150748216 37.10982587085869 0.0 3 0.9580771717637424 6.006314202228542 52085.0 54.70314831557704 0.0 - - - - - - - 160.0 104 1 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2905 366 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A968.[MT7]-TC[CAM]DISFSDPDDLLNFK[MT7].3b8_1.heavy 725.689 / 1070.46 24841.0 38.75149917602539 45 15 10 10 10 2.2394481150748216 37.10982587085869 0.0 3 0.9580771717637424 6.006314202228542 24841.0 54.24282890234528 0.0 - - - - - - - 765.6666666666666 49 9 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2907 367 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1011.[MT7]-DLVVPEK[MT7]WEESGPQFITNSEEVR.4y8_1.heavy 744.885 / 947.479 5562.0 35.37265110015869 42 16 10 6 10 2.334480391528313 42.83608479338439 0.037799835205078125 3 0.9602973129074277 6.173123368060278 5562.0 14.920794695241199 0.0 - - - - - - - 240.0 11 8 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 2909 367 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1011.[MT7]-DLVVPEK[MT7]WEESGPQFITNSEEVR.4b4_1.heavy 744.885 / 571.357 14192.0 35.37265110015869 42 16 10 6 10 2.334480391528313 42.83608479338439 0.037799835205078125 3 0.9602973129074277 6.173123368060278 14192.0 21.70571740309829 0.0 - - - - - - - 849.2857142857143 28 7 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 2911 367 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1011.[MT7]-DLVVPEK[MT7]WEESGPQFITNSEEVR.4y7_1.heavy 744.885 / 834.395 16877.0 35.37265110015869 42 16 10 6 10 2.334480391528313 42.83608479338439 0.037799835205078125 3 0.9602973129074277 6.173123368060278 16877.0 15.838686131386863 1.0 - - - - - - - 719.0 33 8 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 2913 367 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1011.[MT7]-DLVVPEK[MT7]WEESGPQFITNSEEVR.4y6_1.heavy 744.885 / 733.347 9781.0 35.37265110015869 42 16 10 6 10 2.334480391528313 42.83608479338439 0.037799835205078125 3 0.9602973129074277 6.173123368060278 9781.0 28.529626211666002 0.0 - - - - - - - 277.3333333333333 19 9 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 2915 368 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1498.[MT7]-TAFDDAIAELDTLNEDSYK[MT7].4b4_1.heavy 605.549 / 579.289 N/A N/A - - - - - - - - - 0.0 - - - - - - - YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2917 368 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1498.[MT7]-TAFDDAIAELDTLNEDSYK[MT7].4b5_1.heavy 605.549 / 694.316 N/A N/A - - - - - - - - - 0.0 - - - - - - - YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2919 368 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1498.[MT7]-TAFDDAIAELDTLNEDSYK[MT7].4y3_1.heavy 605.549 / 541.31 N/A N/A - - - - - - - - - 0.0 - - - - - - - YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2921 368 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1498.[MT7]-TAFDDAIAELDTLNEDSYK[MT7].4b6_1.heavy 605.549 / 765.354 N/A N/A - - - - - - - - - 0.0 - - - - - - - YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2923 369 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1197.[MT7]-K[MT7]ASAAQLR.3y7_1.heavy 378.24 / 716.405 18389.0 16.21769905090332 38 14 4 10 10 1.7484820135408854 38.38110005569576 0.0 3 0.9487545031151118 5.428279541279053 18389.0 111.8304524371615 0.0 - - - - - - - 227.8 36 5 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2925 369 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1197.[MT7]-K[MT7]ASAAQLR.3y6_1.heavy 378.24 / 645.368 13460.0 16.21769905090332 38 14 4 10 10 1.7484820135408854 38.38110005569576 0.0 3 0.9487545031151118 5.428279541279053 13460.0 68.01029023746702 0.0 - - - - - - - 284.5 26 6 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2927 369 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1197.[MT7]-K[MT7]ASAAQLR.3y4_1.heavy 378.24 / 487.299 21801.0 16.21769905090332 38 14 4 10 10 1.7484820135408854 38.38110005569576 0.0 3 0.9487545031151118 5.428279541279053 21801.0 54.61597789947647 0.0 - - - - - - - 221.5 76 6 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2929 369 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1197.[MT7]-K[MT7]ASAAQLR.3y5_1.heavy 378.24 / 558.336 19526.0 16.21769905090332 38 14 4 10 10 1.7484820135408854 38.38110005569576 0.0 3 0.9487545031151118 5.428279541279053 19526.0 52.854410209635674 0.0 - - - - - - - 298.0 39 7 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 2931 370 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1497.[MT7]-TAFDDAIAELDTLNEDSYK[MT7].3y3_1.heavy 807.063 / 541.31 33056.0 43.854400634765625 47 17 10 10 10 2.530816432924931 39.51294084353142 0.0 3 0.9730369524539444 7.498893674692244 33056.0 60.66227830750383 0.0 - - - - - - - 808.5555555555555 66 9 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2933 370 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1497.[MT7]-TAFDDAIAELDTLNEDSYK[MT7].3b6_1.heavy 807.063 / 765.354 84775.0 43.854400634765625 47 17 10 10 10 2.530816432924931 39.51294084353142 0.0 3 0.9730369524539444 7.498893674692244 84775.0 75.114944042731 0.0 - - - - - - - 197.5 169 8 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2935 370 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1497.[MT7]-TAFDDAIAELDTLNEDSYK[MT7].3b5_1.heavy 807.063 / 694.316 43494.0 43.854400634765625 47 17 10 10 10 2.530816432924931 39.51294084353142 0.0 3 0.9730369524539444 7.498893674692244 43494.0 73.22408741466991 0.0 - - - - - - - 373.45454545454544 86 11 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2937 370 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1497.[MT7]-TAFDDAIAELDTLNEDSYK[MT7].3b7_1.heavy 807.063 / 878.438 40015.0 43.854400634765625 47 17 10 10 10 2.530816432924931 39.51294084353142 0.0 3 0.9730369524539444 7.498893674692244 40015.0 108.51036842646907 0.0 - - - - - - - 284.4 80 10 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2939 371 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1196.[MT7]-EVLDQVER.2y4_1.heavy 566.31 / 531.289 147364.0 24.035425662994385 46 20 10 6 10 11.811469203980526 8.466347265782947 0.03849983215332031 3 0.9970315581604319 22.64595331256489 147364.0 39.10097311461604 0.0 - - - - - - - 781.0 294 1 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 2941 371 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1196.[MT7]-EVLDQVER.2b4_1.heavy 566.31 / 601.331 100760.0 24.035425662994385 46 20 10 6 10 11.811469203980526 8.466347265782947 0.03849983215332031 3 0.9970315581604319 22.64595331256489 100760.0 87.38823759893424 0.0 - - - - - - - 618.5 201 8 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 2943 371 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1196.[MT7]-EVLDQVER.2y6_1.heavy 566.31 / 759.399 77848.0 24.035425662994385 46 20 10 6 10 11.811469203980526 8.466347265782947 0.03849983215332031 3 0.9970315581604319 22.64595331256489 77848.0 134.340309430936 0.0 - - - - - - - 260.0 155 4 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 2945 371 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1196.[MT7]-EVLDQVER.2y7_1.heavy 566.31 / 858.468 113517.0 24.035425662994385 46 20 10 6 10 11.811469203980526 8.466347265782947 0.03849983215332031 3 0.9970315581604319 22.64595331256489 113517.0 256.49588189091617 0.0 - - - - - - - 260.0 227 1 SRC v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 2947 372 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1495.[MT7]-LVILDEADAMTQDAQNALRR.3y7_1.heavy 796.42 / 828.48 5159.0 42.74190044403076 44 18 10 6 10 15.511414084761025 6.446865479417742 0.038799285888671875 3 0.9835872107121789 9.620006792011976 5159.0 35.71672817395709 0.0 - - - - - - - 332.72727272727275 10 11 RFC5 replication factor C (activator 1) 5, 36.5kDa 2949 372 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1495.[MT7]-LVILDEADAMTQDAQNALRR.3y17_2.heavy 796.42 / 959.458 8322.0 42.74190044403076 44 18 10 6 10 15.511414084761025 6.446865479417742 0.038799285888671875 3 0.9835872107121789 9.620006792011976 8322.0 31.994175545738045 0.0 - - - - - - - 316.1 16 10 RFC5 replication factor C (activator 1) 5, 36.5kDa 2951 372 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1495.[MT7]-LVILDEADAMTQDAQNALRR.3y12_2.heavy 796.42 / 687.849 12316.0 42.74190044403076 44 18 10 6 10 15.511414084761025 6.446865479417742 0.038799285888671875 3 0.9835872107121789 9.620006792011976 12316.0 34.04916283016483 0.0 - - - - - - - 302.45454545454544 24 11 RFC5 replication factor C (activator 1) 5, 36.5kDa 2953 372 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1495.[MT7]-LVILDEADAMTQDAQNALRR.3y19_2.heavy 796.42 / 1065.53 8155.0 42.74190044403076 44 18 10 6 10 15.511414084761025 6.446865479417742 0.038799285888671875 3 0.9835872107121789 9.620006792011976 8155.0 64.79535348601613 0.0 - - - - - - - 221.66666666666666 16 12 RFC5 replication factor C (activator 1) 5, 36.5kDa 2955 373 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1193.[MT7]-RPVLQVLR.3y3_1.heavy 375.584 / 387.271 74645.0 26.3075008392334 48 18 10 10 10 5.469544257187205 18.28305893468106 0.0 3 0.988073727443151 11.289570801965063 74645.0 116.13207226354942 0.0 - - - - - - - 314.0 149 3 SSBP1 single-stranded DNA binding protein 1 2957 373 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1193.[MT7]-RPVLQVLR.3b4_1.heavy 375.584 / 610.416 30109.0 26.3075008392334 48 18 10 10 10 5.469544257187205 18.28305893468106 0.0 3 0.988073727443151 11.289570801965063 30109.0 126.28550633896721 0.0 - - - - - - - 314.0 60 2 SSBP1 single-stranded DNA binding protein 1 2959 373 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1193.[MT7]-RPVLQVLR.3b3_1.heavy 375.584 / 497.332 40459.0 26.3075008392334 48 18 10 10 10 5.469544257187205 18.28305893468106 0.0 3 0.988073727443151 11.289570801965063 40459.0 192.08767094342687 0.0 - - - - - - - 314.0 80 2 SSBP1 single-stranded DNA binding protein 1 2961 373 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1193.[MT7]-RPVLQVLR.3y4_1.heavy 375.584 / 515.33 76214.0 26.3075008392334 48 18 10 10 10 5.469544257187205 18.28305893468106 0.0 3 0.988073727443151 11.289570801965063 76214.0 270.06126837651965 0.0 - - - - - - - 314.0 152 2 SSBP1 single-stranded DNA binding protein 1 2963 374 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1192.[MT7]-VTQLPGPIR.2y8_1.heavy 562.849 / 881.52 105678.0 27.197900772094727 44 14 10 10 10 1.9350880671805581 43.06102189336128 0.0 3 0.9465527689514747 5.314301706428287 105678.0 369.83608864315335 0.0 - - - - - - - 328.0 211 4 SOCS3 suppressor of cytokine signaling 3 2965 374 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1192.[MT7]-VTQLPGPIR.2y5_1.heavy 562.849 / 539.33 172630.0 27.197900772094727 44 14 10 10 10 1.9350880671805581 43.06102189336128 0.0 3 0.9465527689514747 5.314301706428287 172630.0 129.1766755521706 0.0 - - - - - - - 875.3333333333334 345 3 SOCS3 suppressor of cytokine signaling 3 2967 374 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1192.[MT7]-VTQLPGPIR.2b4_1.heavy 562.849 / 586.368 76469.0 27.197900772094727 44 14 10 10 10 1.9350880671805581 43.06102189336128 0.0 3 0.9465527689514747 5.314301706428287 76469.0 146.52931529195027 0.0 - - - - - - - 797.0 152 7 SOCS3 suppressor of cytokine signaling 3 2969 374 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1192.[MT7]-VTQLPGPIR.2y6_1.heavy 562.849 / 652.414 30850.0 27.197900772094727 44 14 10 10 10 1.9350880671805581 43.06102189336128 0.0 3 0.9465527689514747 5.314301706428287 30850.0 98.43853277632573 0.0 - - - - - - - 328.0 61 1 SOCS3 suppressor of cytokine signaling 3 2971 375 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A857.[MT7]-VANSVLFPC[CAM]K[MT7].2y4_1.heavy 711.904 / 695.367 15571.0 30.430700302124023 50 20 10 10 10 6.366494874302339 15.707230112387128 0.0 3 0.9951859259155433 17.77999374828999 15571.0 35.14221578116572 0.0 - - - - - - - 318.0 31 5 SIAH1 seven in absentia homolog 1 (Drosophila) 2973 375 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A857.[MT7]-VANSVLFPC[CAM]K[MT7].2y5_1.heavy 711.904 / 808.451 11122.0 30.430700302124023 50 20 10 10 10 6.366494874302339 15.707230112387128 0.0 3 0.9951859259155433 17.77999374828999 11122.0 6.384967873536154 1.0 - - - - - - - 318.0 22 3 SIAH1 seven in absentia homolog 1 (Drosophila) 2975 375 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A857.[MT7]-VANSVLFPC[CAM]K[MT7].2b4_1.heavy 711.904 / 516.29 9216.0 30.430700302124023 50 20 10 10 10 6.366494874302339 15.707230112387128 0.0 3 0.9951859259155433 17.77999374828999 9216.0 22.7114153913164 0.0 - - - - - - - 318.0 18 4 SIAH1 seven in absentia homolog 1 (Drosophila) 2977 375 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A857.[MT7]-VANSVLFPC[CAM]K[MT7].2y3_1.heavy 711.904 / 548.298 42901.0 30.430700302124023 50 20 10 10 10 6.366494874302339 15.707230112387128 0.0 3 0.9951859259155433 17.77999374828999 42901.0 90.809587306205 0.0 - - - - - - - 318.0 85 2 SIAH1 seven in absentia homolog 1 (Drosophila) 2979 376 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1191.[MT7]-LADFGLAK[MT7].2y4_1.heavy 561.842 / 532.357 56676.0 31.99155044555664 42 17 10 5 10 3.424794016865883 23.366397757304956 0.04830169677734375 3 0.9768846330767449 8.101619325191132 56676.0 72.93065190892892 0.0 - - - - - - - 818.5 113 8 CDK7;DCLK3 cyclin-dependent kinase 7;doublecortin-like kinase 3 2981 376 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1191.[MT7]-LADFGLAK[MT7].2y5_1.heavy 561.842 / 679.426 84586.0 31.99155044555664 42 17 10 5 10 3.424794016865883 23.366397757304956 0.04830169677734375 3 0.9768846330767449 8.101619325191132 84586.0 83.16271086595326 0.0 - - - - - - - 285.0 169 1 CDK7;DCLK3 cyclin-dependent kinase 7;doublecortin-like kinase 3 2983 376 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1191.[MT7]-LADFGLAK[MT7].2b5_1.heavy 561.842 / 648.347 26771.0 31.99155044555664 42 17 10 5 10 3.424794016865883 23.366397757304956 0.04830169677734375 3 0.9768846330767449 8.101619325191132 26771.0 42.307111501316946 0.0 - - - - - - - 285.0 53 4 CDK7;DCLK3 cyclin-dependent kinase 7;doublecortin-like kinase 3 2985 376 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1191.[MT7]-LADFGLAK[MT7].2y7_1.heavy 561.842 / 865.49 86010.0 31.99155044555664 42 17 10 5 10 3.424794016865883 23.366397757304956 0.04830169677734375 3 0.9768846330767449 8.101619325191132 86010.0 181.85796589806387 0.0 - - - - - - - 610.5714285714286 172 7 CDK7;DCLK3 cyclin-dependent kinase 7;doublecortin-like kinase 3 2987 377 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A711.[MT7]-ELEEC[CAM]QR.2b3_1.heavy 554.265 / 516.279 7514.0 17.413700103759766 45 15 10 10 10 3.078417157163089 25.539741979841185 0.0 3 0.9554915930916905 5.827968882063446 7514.0 5.96022975929978 0.0 - - - - - - - 203.0 15 1 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 2989 377 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A711.[MT7]-ELEEC[CAM]QR.2y4_1.heavy 554.265 / 592.251 4671.0 17.413700103759766 45 15 10 10 10 3.078417157163089 25.539741979841185 0.0 3 0.9554915930916905 5.827968882063446 4671.0 10.661231527093596 0.0 - - - - - - - 243.6 9 5 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 2991 377 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A711.[MT7]-ELEEC[CAM]QR.2b4_1.heavy 554.265 / 645.321 3250.0 17.413700103759766 45 15 10 10 10 3.078417157163089 25.539741979841185 0.0 3 0.9554915930916905 5.827968882063446 3250.0 7.564655172413794 0.0 - - - - - - - 355.25 6 4 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 2993 377 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A711.[MT7]-ELEEC[CAM]QR.2y6_1.heavy 554.265 / 834.377 11373.0 17.413700103759766 45 15 10 10 10 3.078417157163089 25.539741979841185 0.0 3 0.9554915930916905 5.827968882063446 11373.0 17.274261083743845 0.0 - - - - - - - 270.6666666666667 22 6 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 2995 378 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A858.[MT7]-QEILAVSWSPR.2b3_1.heavy 715.4 / 515.295 13333.0 32.49380111694336 34 8 10 10 6 1.004957431459442 61.19265598828959 0.0 5 0.7837412003321148 2.604465373997161 13333.0 17.704365920731146 2.0 - - - - - - - 345.0 34 6 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 2997 378 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A858.[MT7]-QEILAVSWSPR.2y8_1.heavy 715.4 / 915.505 11034.0 32.49380111694336 34 8 10 10 6 1.004957431459442 61.19265598828959 0.0 5 0.7837412003321148 2.604465373997161 11034.0 14.282819843342036 2.0 - - - - - - - 755.7142857142857 28 7 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 2999 378 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A858.[MT7]-QEILAVSWSPR.2y10_1.heavy 715.4 / 1157.63 460.0 32.49380111694336 34 8 10 10 6 1.004957431459442 61.19265598828959 0.0 5 0.7837412003321148 2.604465373997161 460.0 -0.21340295909486506 15.0 - - - - - - - 373.75 18 8 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3001 378 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A858.[MT7]-QEILAVSWSPR.2y7_1.heavy 715.4 / 802.421 33563.0 32.49380111694336 34 8 10 10 6 1.004957431459442 61.19265598828959 0.0 5 0.7837412003321148 2.604465373997161 33563.0 30.25481564121158 0.0 - - - - - - - 361.42857142857144 67 7 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3003 379 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1499.[MT7]-TAFDEAIAELDTLSEESYK[MT7].3b6_1.heavy 807.403 / 779.369 39246.0 46.67390060424805 47 17 10 10 10 2.3157114772592107 33.64586798101655 0.0 3 0.9727097629672098 7.453599789865 39246.0 112.25625877640775 0.0 - - - - - - - 321.3 78 10 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3005 379 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1499.[MT7]-TAFDEAIAELDTLSEESYK[MT7].3b4_1.heavy 807.403 / 579.289 15580.0 46.67390060424805 47 17 10 10 10 2.3157114772592107 33.64586798101655 0.0 3 0.9727097629672098 7.453599789865 15580.0 76.00159663865546 0.0 - - - - - - - 198.33333333333334 31 15 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3007 379 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1499.[MT7]-TAFDEAIAELDTLSEESYK[MT7].3b5_1.heavy 807.403 / 708.332 19742.0 46.67390060424805 47 17 10 10 10 2.3157114772592107 33.64586798101655 0.0 3 0.9727097629672098 7.453599789865 19742.0 93.33790260583729 0.0 - - - - - - - 275.1875 39 16 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3009 379 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1499.[MT7]-TAFDEAIAELDTLSEESYK[MT7].3b7_1.heavy 807.403 / 892.453 23548.0 46.67390060424805 47 17 10 10 10 2.3157114772592107 33.64586798101655 0.0 3 0.9727097629672098 7.453599789865 23548.0 38.49150815466373 0.0 - - - - - - - 297.5 47 12 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3011 380 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1190.[MT7]-EDFVALER.2b3_1.heavy 561.799 / 536.247 22000.0 29.142799377441406 45 15 10 10 10 1.8011765718852184 39.66545206703674 0.0 3 0.9597368922567796 6.129720546469133 22000.0 25.338932213557285 0.0 - - - - - - - 333.0 44 1 RNASEH1 ribonuclease H1 3013 380 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1190.[MT7]-EDFVALER.2y6_1.heavy 561.799 / 734.42 40667.0 29.142799377441406 45 15 10 10 10 1.8011765718852184 39.66545206703674 0.0 3 0.9597368922567796 6.129720546469133 40667.0 70.82913119954989 0.0 - - - - - - - 333.0 81 5 RNASEH1 ribonuclease H1 3015 380 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1190.[MT7]-EDFVALER.2b5_1.heavy 561.799 / 706.353 16333.0 29.142799377441406 45 15 10 10 10 1.8011765718852184 39.66545206703674 0.0 3 0.9597368922567796 6.129720546469133 16333.0 4.090884560261551 1.0 - - - - - - - 333.0 33 3 RNASEH1 ribonuclease H1 3017 380 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1190.[MT7]-EDFVALER.2y7_1.heavy 561.799 / 849.446 28667.0 29.142799377441406 45 15 10 10 10 1.8011765718852184 39.66545206703674 0.0 3 0.9597368922567796 6.129720546469133 28667.0 71.27351141079461 0.0 - - - - - - - 333.0 57 3 RNASEH1 ribonuclease H1 3019 381 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1050.[MT7]-TFSSK[MT7].2b3_1.heavy 429.252 / 480.258 8327.0 17.466999053955078 43 13 10 10 10 1.7428347998300955 57.37778475030952 0.0 3 0.9008381814618165 3.8862815118633973 8327.0 15.382389162561577 0.0 - - - - - - - 338.3333333333333 16 3 SOCS3 suppressor of cytokine signaling 3 3021 381 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1050.[MT7]-TFSSK[MT7].2y4_1.heavy 429.252 / 612.347 86721.0 17.466999053955078 43 13 10 10 10 1.7428347998300955 57.37778475030952 0.0 3 0.9008381814618165 3.8862815118633973 86721.0 76.84859893174777 0.0 - - - - - - - 284.2 173 5 SOCS3 suppressor of cytokine signaling 3 3023 381 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1050.[MT7]-TFSSK[MT7].2y3_1.heavy 429.252 / 465.279 40822.0 17.466999053955078 43 13 10 10 10 1.7428347998300955 57.37778475030952 0.0 3 0.9008381814618165 3.8862815118633973 40822.0 83.77800062233035 0.0 - - - - - - - 338.3333333333333 81 6 SOCS3 suppressor of cytokine signaling 3 3025 381 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1050.[MT7]-TFSSK[MT7].2y2_1.heavy 429.252 / 378.247 25996.0 17.466999053955078 43 13 10 10 10 1.7428347998300955 57.37778475030952 0.0 3 0.9008381814618165 3.8862815118633973 25996.0 29.961892231906027 0.0 - - - - - - - 710.5 51 8 SOCS3 suppressor of cytokine signaling 3 3027 382 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A714.[MT7]-LNQPPEDGISSVK[MT7].3y7_1.heavy 557.977 / 849.48 3446.0 25.127374172210693 45 20 10 5 10 9.111593800190285 10.97502832028263 0.04129981994628906 3 0.9925055380039833 14.246905114025624 3446.0 3.9804228995696276 1.0 - - - - - - - 287.0 6 3 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 3029 382 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A714.[MT7]-LNQPPEDGISSVK[MT7].3y6_1.heavy 557.977 / 734.453 4594.0 25.127374172210693 45 20 10 5 10 9.111593800190285 10.97502832028263 0.04129981994628906 3 0.9925055380039833 14.246905114025624 4594.0 5.417183204161482 1.0 - - - - - - - 789.25 9 8 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 3031 382 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A714.[MT7]-LNQPPEDGISSVK[MT7].3y4_1.heavy 557.977 / 564.347 82405.0 25.127374172210693 45 20 10 5 10 9.111593800190285 10.97502832028263 0.04129981994628906 3 0.9925055380039833 14.246905114025624 82405.0 79.63722839802598 0.0 - - - - - - - 287.0 164 1 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 3033 382 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A714.[MT7]-LNQPPEDGISSVK[MT7].3b8_1.heavy 557.977 / 995.491 14356.0 25.127374172210693 45 20 10 5 10 9.111593800190285 10.97502832028263 0.04129981994628906 3 0.9925055380039833 14.246905114025624 14356.0 22.67227318043846 0.0 - - - - - - - 733.4444444444445 28 9 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 3035 383 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A853.[MT7]-ALHELLLSAQR.3y6_1.heavy 465.613 / 687.415 139148.0 30.83679962158203 47 17 10 10 10 3.0360488228686386 26.092826714731885 0.0 3 0.974461564031818 7.706134708068015 139148.0 538.859849172743 0.0 - - - - - - - 313.0 278 5 GADD45G growth arrest and DNA-damage-inducible, gamma 3037 383 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A853.[MT7]-ALHELLLSAQR.3b4_1.heavy 465.613 / 595.332 121598.0 30.83679962158203 47 17 10 10 10 3.0360488228686386 26.092826714731885 0.0 3 0.974461564031818 7.706134708068015 121598.0 273.45004784688996 0.0 - - - - - - - 313.0 243 2 GADD45G growth arrest and DNA-damage-inducible, gamma 3039 383 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A853.[MT7]-ALHELLLSAQR.3y4_1.heavy 465.613 / 461.247 248837.0 30.83679962158203 47 17 10 10 10 3.0360488228686386 26.092826714731885 0.0 3 0.974461564031818 7.706134708068015 248837.0 288.5329662716499 0.0 - - - - - - - 877.4 497 5 GADD45G growth arrest and DNA-damage-inducible, gamma 3041 383 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A853.[MT7]-ALHELLLSAQR.3y5_1.heavy 465.613 / 574.331 192739.0 30.83679962158203 47 17 10 10 10 3.0360488228686386 26.092826714731885 0.0 3 0.974461564031818 7.706134708068015 192739.0 679.8834952134926 0.0 - - - - - - - 313.0 385 2 GADD45G growth arrest and DNA-damage-inducible, gamma 3043 384 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A715.[MT7]-NLILAGVK[MT7].2y4_1.heavy 558.373 / 518.342 186283.0 30.83679962158203 48 18 10 10 10 3.612393627544633 23.458844384689712 0.0 3 0.9853806261480598 10.194536075744955 186283.0 242.78684673097533 0.0 - - - - - - - 311.0 372 1 SAE1 SUMO1 activating enzyme subunit 1 3045 384 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A715.[MT7]-NLILAGVK[MT7].2y5_1.heavy 558.373 / 631.426 248482.0 30.83679962158203 48 18 10 10 10 3.612393627544633 23.458844384689712 0.0 3 0.9853806261480598 10.194536075744955 248482.0 300.41553697749197 0.0 - - - - - - - 311.0 496 1 SAE1 SUMO1 activating enzyme subunit 1 3047 384 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A715.[MT7]-NLILAGVK[MT7].2b4_1.heavy 558.373 / 598.404 98584.0 30.83679962158203 48 18 10 10 10 3.612393627544633 23.458844384689712 0.0 3 0.9853806261480598 10.194536075744955 98584.0 374.84109324758845 0.0 - - - - - - - 311.0 197 4 SAE1 SUMO1 activating enzyme subunit 1 3049 384 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A715.[MT7]-NLILAGVK[MT7].2y6_1.heavy 558.373 / 744.51 80236.0 30.83679962158203 48 18 10 10 10 3.612393627544633 23.458844384689712 0.0 3 0.9853806261480598 10.194536075744955 80236.0 153.32189251263205 0.0 - - - - - - - 777.5 160 4 SAE1 SUMO1 activating enzyme subunit 1 3051 385 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A855.[MT7]-FQGSFC[CAM]EFVR.2y8_1.heavy 710.844 / 1001.45 14814.0 33.82899856567383 46 16 10 10 10 2.669360902806888 29.056698652698714 0.0 3 0.9608995711097735 6.220800341758062 14814.0 27.105484897076856 0.0 - - - - - - - 334.1111111111111 29 9 STAG3 stromal antigen 3 3053 385 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A855.[MT7]-FQGSFC[CAM]EFVR.2b4_1.heavy 710.844 / 564.29 5555.0 33.82899856567383 46 16 10 10 10 2.669360902806888 29.056698652698714 0.0 3 0.9608995711097735 6.220800341758062 5555.0 9.198344132469401 1.0 - - - - - - - 315.3636363636364 11 11 STAG3 stromal antigen 3 3055 385 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A855.[MT7]-FQGSFC[CAM]EFVR.2y9_1.heavy 710.844 / 1129.51 10879.0 33.82899856567383 46 16 10 10 10 2.669360902806888 29.056698652698714 0.0 3 0.9608995711097735 6.220800341758062 10879.0 65.65055846960814 0.0 - - - - - - - 323.8 21 10 STAG3 stromal antigen 3 3057 385 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A855.[MT7]-FQGSFC[CAM]EFVR.2y7_1.heavy 710.844 / 944.43 2546.0 33.82899856567383 46 16 10 10 10 2.669360902806888 29.056698652698714 0.0 3 0.9608995711097735 6.220800341758062 2546.0 5.023974082073433 1.0 - - - - - - - 308.3333333333333 5 9 STAG3 stromal antigen 3 3059 386 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1054.[MT7]-AILEK[MT7].2b3_1.heavy 431.286 / 442.315 27417.0 22.766074657440186 46 20 10 6 10 9.565173026209248 10.454593944719342 0.03489875793457031 3 0.9933043734926101 15.073848252128538 27417.0 22.23907687614399 0.0 - - - - - - - 327.625 54 8 PRPF6;FANCL;CHD7;CHD8;LOC653889;CHD9;CHD6 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae);Fanconi anemia, complementation group L;chromodomain helicase DNA binding protein 7;chromodomain helicase DNA binding protein 8;pre-mRNA-processing factor 6-like;chromodomain helicase DNA binding protein 9;chromodomain helicase DNA binding protein 6 3061 386 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1054.[MT7]-AILEK[MT7].2y4_1.heavy 431.286 / 646.426 89403.0 22.766074657440186 46 20 10 6 10 9.565173026209248 10.454593944719342 0.03489875793457031 3 0.9933043734926101 15.073848252128538 89403.0 131.4008023555392 0.0 - - - - - - - 306.2857142857143 178 7 PRPF6;FANCL;CHD7;CHD8;LOC653889;CHD9;CHD6 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae);Fanconi anemia, complementation group L;chromodomain helicase DNA binding protein 7;chromodomain helicase DNA binding protein 8;pre-mRNA-processing factor 6-like;chromodomain helicase DNA binding protein 9;chromodomain helicase DNA binding protein 6 3063 386 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1054.[MT7]-AILEK[MT7].2b4_1.heavy 431.286 / 571.357 22649.0 22.766074657440186 46 20 10 6 10 9.565173026209248 10.454593944719342 0.03489875793457031 3 0.9933043734926101 15.073848252128538 22649.0 41.784318658280924 0.0 - - - - - - - 834.5 45 10 PRPF6;FANCL;CHD7;CHD8;LOC653889;CHD9;CHD6 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae);Fanconi anemia, complementation group L;chromodomain helicase DNA binding protein 7;chromodomain helicase DNA binding protein 8;pre-mRNA-processing factor 6-like;chromodomain helicase DNA binding protein 9;chromodomain helicase DNA binding protein 6 3065 386 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1054.[MT7]-AILEK[MT7].2y3_1.heavy 431.286 / 533.341 87496.0 22.766074657440186 46 20 10 6 10 9.565173026209248 10.454593944719342 0.03489875793457031 3 0.9933043734926101 15.073848252128538 87496.0 199.94325675709092 0.0 - - - - - - - 357.5 174 12 PRPF6;FANCL;CHD7;CHD8;LOC653889;CHD9;CHD6 PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae);Fanconi anemia, complementation group L;chromodomain helicase DNA binding protein 7;chromodomain helicase DNA binding protein 8;pre-mRNA-processing factor 6-like;chromodomain helicase DNA binding protein 9;chromodomain helicase DNA binding protein 6 3067 387 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1053.[MT7]-TPLLK[MT7].2b3_1.heavy 430.296 / 456.294 11658.0 24.464000701904297 37 9 10 10 8 1.5877120364720543 62.983713483840006 0.0 4 0.8003228578742438 2.7145103885315938 11658.0 56.38284870848708 0.0 - - - - - - - 271.0 23 5 UBE2U;GLI2 ubiquitin-conjugating enzyme E2U (putative);GLI family zinc finger 2 3069 387 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1053.[MT7]-TPLLK[MT7].2y4_1.heavy 430.296 / 614.436 397993.0 24.464000701904297 37 9 10 10 8 1.5877120364720543 62.983713483840006 0.0 4 0.8003228578742438 2.7145103885315938 397993.0 617.6628044775417 0.0 - - - - - - - 632.3333333333334 795 3 UBE2U;GLI2 ubiquitin-conjugating enzyme E2U (putative);GLI family zinc finger 2 3071 387 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1053.[MT7]-TPLLK[MT7].2y3_1.heavy 430.296 / 517.383 33347.0 24.464000701904297 37 9 10 10 8 1.5877120364720543 62.983713483840006 0.0 4 0.8003228578742438 2.7145103885315938 33347.0 73.7899790897909 0.0 - - - - - - - 271.0 66 3 UBE2U;GLI2 ubiquitin-conjugating enzyme E2U (putative);GLI family zinc finger 2 3073 387 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1053.[MT7]-TPLLK[MT7].2y1_1.heavy 430.296 / 291.215 54765.0 24.464000701904297 37 9 10 10 8 1.5877120364720543 62.983713483840006 0.0 4 0.8003228578742438 2.7145103885315938 54765.0 3.85345215435022 2.0 - - - - - - - 3253.0 164 1 UBE2U;GLI2 ubiquitin-conjugating enzyme E2U (putative);GLI family zinc finger 2 3075 388 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A718.[MT7]-VVEFLVK[MT7].2y4_1.heavy 561.362 / 650.436 80252.0 34.397701263427734 47 17 10 10 10 2.9209579339550005 29.302997484986626 0.0 3 0.9789804800197806 8.497424262737281 80252.0 140.51864486485655 0.0 - - - - - - - 364.0 160 4 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 3077 388 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A718.[MT7]-VVEFLVK[MT7].2b4_1.heavy 561.362 / 619.357 56550.0 34.397701263427734 47 17 10 10 10 2.9209579339550005 29.302997484986626 0.0 3 0.9789804800197806 8.497424262737281 56550.0 150.08703102453103 0.0 - - - - - - - 338.0 113 8 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 3079 388 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A718.[MT7]-VVEFLVK[MT7].2y3_1.heavy 561.362 / 503.367 64867.0 34.397701263427734 47 17 10 10 10 2.9209579339550005 29.302997484986626 0.0 3 0.9789804800197806 8.497424262737281 64867.0 99.28954890298705 0.0 - - - - - - - 312.0 129 4 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 3081 388 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A718.[MT7]-VVEFLVK[MT7].2y6_1.heavy 561.362 / 878.547 109774.0 34.397701263427734 47 17 10 10 10 2.9209579339550005 29.302997484986626 0.0 3 0.9789804800197806 8.497424262737281 109774.0 543.7091709495139 0.0 - - - - - - - 260.0 219 4 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 3083 389 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A850.[MT7]-RATVVESSEK[MT7].2y4_1.heavy 697.398 / 594.321 1517.0 16.21769905090332 47 17 10 10 10 3.693943843186313 27.071337368719238 0.0 3 0.9792988099498583 8.562737939598302 1517.0 6.80448548812665 0.0 - - - - - - - 284.5 3 4 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 3085 389 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A850.[MT7]-RATVVESSEK[MT7].2y8_1.heavy 697.398 / 1022.55 N/A 16.21769905090332 47 17 10 10 10 3.693943843186313 27.071337368719238 0.0 3 0.9792988099498583 8.562737939598302 0.0 0.0 10.0 - - - - - - - 0.0 1 0 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 3087 389 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A850.[MT7]-RATVVESSEK[MT7].2b9_1.heavy 697.398 / 1103.58 2655.0 16.21769905090332 47 17 10 10 10 3.693943843186313 27.071337368719238 0.0 3 0.9792988099498583 8.562737939598302 2655.0 7.698430773503679 0.0 - - - - - - - 284.5 5 4 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 3089 389 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A850.[MT7]-RATVVESSEK[MT7].2y9_1.heavy 697.398 / 1093.59 1138.0 16.21769905090332 47 17 10 10 10 3.693943843186313 27.071337368719238 0.0 3 0.9792988099498583 8.562737939598302 1138.0 6.560054020274962 0.0 - - - - - - - 284.5 2 2 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 3091 390 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1052.[MT7]-NTNQIVAIK[MT7].3y3_1.heavy 430.266 / 475.336 24673.0 24.589799880981445 35 15 0 10 10 1.801848941098548 39.34244814137021 0.0 3 0.9556390963271449 5.837722999060531 24673.0 41.52391407203908 0.0 - - - - - - - 277.0 49 8 CDK7 cyclin-dependent kinase 7 3093 390 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1052.[MT7]-NTNQIVAIK[MT7].3b4_1.heavy 430.266 / 602.302 15524.0 24.589799880981445 35 15 0 10 10 1.801848941098548 39.34244814137021 0.0 3 0.9556390963271449 5.837722999060531 15524.0 18.78899422130334 1.0 - - - - - - - 277.0 31 6 CDK7 cyclin-dependent kinase 7 3095 390 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1052.[MT7]-NTNQIVAIK[MT7].3b5_1.heavy 430.266 / 715.385 N/A 24.589799880981445 35 15 0 10 10 1.801848941098548 39.34244814137021 0.0 3 0.9556390963271449 5.837722999060531 18019.0 0.00913254877053346 8.0 - - - - - - - 832.0 261 1 CDK7 cyclin-dependent kinase 7 3097 390 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1052.[MT7]-NTNQIVAIK[MT7].3y4_1.heavy 430.266 / 574.404 16356.0 24.589799880981445 35 15 0 10 10 1.801848941098548 39.34244814137021 0.0 3 0.9556390963271449 5.837722999060531 16356.0 17.390736913326784 0.0 - - - - - - - 277.0 32 9 CDK7 cyclin-dependent kinase 7 3099 391 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A912.[MT7]-LTADPDSEIATTSLR.2b8_1.heavy 867.456 / 973.459 667.0 28.9906005859375 35 5 10 10 10 0.6215907665147213 84.34993523694 0.0 3 0.6382768192341238 1.986627846377841 667.0 2.993003003003003 10.0 - - - - - - - 333.0 2 4 PIAS1;PIAS2 protein inhibitor of activated STAT, 1;protein inhibitor of activated STAT, 2 3101 391 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A912.[MT7]-LTADPDSEIATTSLR.2y9_1.heavy 867.456 / 977.526 7333.0 28.9906005859375 35 5 10 10 10 0.6215907665147213 84.34993523694 0.0 3 0.6382768192341238 1.986627846377841 7333.0 31.95933561147354 0.0 - - - - - - - 333.0 14 4 PIAS1;PIAS2 protein inhibitor of activated STAT, 1;protein inhibitor of activated STAT, 2 3103 391 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A912.[MT7]-LTADPDSEIATTSLR.2b4_1.heavy 867.456 / 545.305 43333.0 28.9906005859375 35 5 10 10 10 0.6215907665147213 84.34993523694 0.0 3 0.6382768192341238 1.986627846377841 43333.0 45.499649999999995 0.0 - - - - - - - 333.0 86 4 PIAS1;PIAS2 protein inhibitor of activated STAT, 1;protein inhibitor of activated STAT, 2 3105 391 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A912.[MT7]-LTADPDSEIATTSLR.2y11_1.heavy 867.456 / 1189.61 15667.0 28.9906005859375 35 5 10 10 10 0.6215907665147213 84.34993523694 0.0 3 0.6382768192341238 1.986627846377841 15667.0 39.930884557721136 0.0 - - - - - - - 333.0 31 1 PIAS1;PIAS2 protein inhibitor of activated STAT, 1;protein inhibitor of activated STAT, 2 3107 392 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1046.[MT7]-VTLPK[MT7].2b3_1.heavy 423.289 / 458.31 24728.0 24.07395029067993 32 18 2 6 6 6.461763490798325 15.47565152181783 0.03859901428222656 5 0.987317465346698 10.947104749383362 24728.0 38.055733840304185 0.0 - - - - - - - 263.0 49 5 C10orf72;RFC2 chromosome 10 open reading frame 72;replication factor C (activator 1) 2, 40kDa 3109 392 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1046.[MT7]-VTLPK[MT7].2y4_1.heavy 423.289 / 602.399 36565.0 24.07395029067993 32 18 2 6 6 6.461763490798325 15.47565152181783 0.03859901428222656 5 0.987317465346698 10.947104749383362 36565.0 16.857438212927754 3.0 - - - - - - - 263.0 840 1 C10orf72;RFC2 chromosome 10 open reading frame 72;replication factor C (activator 1) 2, 40kDa 3111 392 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1046.[MT7]-VTLPK[MT7].2y3_1.heavy 423.289 / 501.352 13942.0 24.07395029067993 32 18 2 6 6 6.461763490798325 15.47565152181783 0.03859901428222656 5 0.987317465346698 10.947104749383362 13942.0 13.399514737353503 0.0 - - - - - - - 263.0 27 4 C10orf72;RFC2 chromosome 10 open reading frame 72;replication factor C (activator 1) 2, 40kDa 3113 392 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1046.[MT7]-VTLPK[MT7].2y2_1.heavy 423.289 / 388.268 150206.0 24.07395029067993 32 18 2 6 6 6.461763490798325 15.47565152181783 0.03859901428222656 5 0.987317465346698 10.947104749383362 150206.0 20.849333494379803 2.0 - - - - - - - 263.0 300 3 C10orf72;RFC2 chromosome 10 open reading frame 72;replication factor C (activator 1) 2, 40kDa 3115 393 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1047.[MT7]-QVEGK[MT7].2b3_1.heavy 424.758 / 501.279 N/A 14.263699531555176 35 17 2 10 6 2.912943151644605 34.32954053481664 0.0 6 0.970658541321352 7.1871028166977995 7027.0 0.9808235723126251 9.0 - - - - - - - 843.0 207 1 SSBP1 single-stranded DNA binding protein 1 3117 393 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1047.[MT7]-QVEGK[MT7].2y4_1.heavy 424.758 / 576.347 51720.0 14.263699531555176 35 17 2 10 6 2.912943151644605 34.32954053481664 0.0 6 0.970658541321352 7.1871028166977995 51720.0 79.12577901223852 0.0 - - - - - - - 843.25 103 8 SSBP1 single-stranded DNA binding protein 1 3119 393 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1047.[MT7]-QVEGK[MT7].2b4_1.heavy 424.758 / 558.3 5341.0 14.263699531555176 35 17 2 10 6 2.912943151644605 34.32954053481664 0.0 6 0.970658541321352 7.1871028166977995 5341.0 3.8014234875444846 4.0 - - - - - - - 1159.25 85 8 SSBP1 single-stranded DNA binding protein 1 3121 393 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1047.[MT7]-QVEGK[MT7].2y3_1.heavy 424.758 / 477.279 28390.0 14.263699531555176 35 17 2 10 6 2.912943151644605 34.32954053481664 0.0 6 0.970658541321352 7.1871028166977995 28390.0 44.03763266156969 1.0 - - - - - - - 302.9230769230769 72 13 SSBP1 single-stranded DNA binding protein 1 3123 394 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A914.[MT7]-EVTTLTADPPDGIK[MT7].3y6_1.heavy 582.324 / 770.453 26409.0 27.572550773620605 41 16 10 5 10 3.4952349320476737 28.6103801158268 0.04870033264160156 3 0.9624668970202961 6.350198796756856 26409.0 26.043356250469444 0.0 - - - - - - - 330.0 52 1 UBE2S ubiquitin-conjugating enzyme E2S 3125 394 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A914.[MT7]-EVTTLTADPPDGIK[MT7].3b4_1.heavy 582.324 / 575.316 21127.0 27.572550773620605 41 16 10 5 10 3.4952349320476737 28.6103801158268 0.04870033264160156 3 0.9624668970202961 6.350198796756856 21127.0 28.72180226997412 0.0 - - - - - - - 330.0 42 1 UBE2S ubiquitin-conjugating enzyme E2S 3127 394 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A914.[MT7]-EVTTLTADPPDGIK[MT7].3b5_1.heavy 582.324 / 688.4 11884.0 27.572550773620605 41 16 10 5 10 3.4952349320476737 28.6103801158268 0.04870033264160156 3 0.9624668970202961 6.350198796756856 11884.0 13.748298001211388 0.0 - - - - - - - 330.0 23 2 UBE2S ubiquitin-conjugating enzyme E2S 3129 394 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A914.[MT7]-EVTTLTADPPDGIK[MT7].3y4_1.heavy 582.324 / 576.347 19806.0 27.572550773620605 41 16 10 5 10 3.4952349320476737 28.6103801158268 0.04870033264160156 3 0.9624668970202961 6.350198796756856 19806.0 18.182654115001206 0.0 - - - - - - - 330.0 39 1 UBE2S ubiquitin-conjugating enzyme E2S 3131 395 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1044.[MT7]-NPTAFK[MT7]K[MT7].3y6_2.heavy 413.259 / 490.313 125797.0 19.07243283589681 39 14 10 5 10 2.459594137162002 37.17306200706262 0.0410003662109375 3 0.9375775796468141 4.913677139601709 125797.0 335.55495404361477 0.0 - - - - - - - 344.3333333333333 251 3 UBE2C ubiquitin-conjugating enzyme E2C 3133 395 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1044.[MT7]-NPTAFK[MT7]K[MT7].3y3_1.heavy 413.259 / 710.48 9502.0 19.07243283589681 39 14 10 5 10 2.459594137162002 37.17306200706262 0.0410003662109375 3 0.9375775796468141 4.913677139601709 9502.0 82.62608695652175 0.0 - - - - - - - 248.2 19 5 UBE2C ubiquitin-conjugating enzyme E2C 3135 395 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1044.[MT7]-NPTAFK[MT7]K[MT7].3y4_1.heavy 413.259 / 781.517 11981.0 19.07243283589681 39 14 10 5 10 2.459594137162002 37.17306200706262 0.0410003662109375 3 0.9375775796468141 4.913677139601709 11981.0 109.39173913043479 0.0 - - - - - - - 207.0 23 6 UBE2C ubiquitin-conjugating enzyme E2C 3137 395 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1044.[MT7]-NPTAFK[MT7]K[MT7].3y5_1.heavy 413.259 / 882.565 N/A 19.07243283589681 39 14 10 5 10 2.459594137162002 37.17306200706262 0.0410003662109375 3 0.9375775796468141 4.913677139601709 0.0 -0.0 0.0 - - - - - - - 0.0 0 0 UBE2C ubiquitin-conjugating enzyme E2C 3139 396 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A913.[MT7]-LQQSFPGIEVTVK[MT7].2b3_1.heavy 867.506 / 514.311 13684.0 33.59600067138672 48 18 10 10 10 4.869013598323876 20.538040812706768 0.0 3 0.9852707272123076 10.15633930714023 13684.0 36.30061111111111 1.0 - - - - - - - 400.0 27 6 RNASEH2A ribonuclease H2, subunit A 3141 396 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A913.[MT7]-LQQSFPGIEVTVK[MT7].2y8_1.heavy 867.506 / 986.6 17765.0 33.59600067138672 48 18 10 10 10 4.869013598323876 20.538040812706768 0.0 3 0.9852707272123076 10.15633930714023 17765.0 73.26779552657791 1.0 - - - - - - - 288.0 44 5 RNASEH2A ribonuclease H2, subunit A 3143 396 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A913.[MT7]-LQQSFPGIEVTVK[MT7].2y5_1.heavy 867.506 / 719.442 6722.0 33.59600067138672 48 18 10 10 10 4.869013598323876 20.538040812706768 0.0 3 0.9852707272123076 10.15633930714023 6722.0 41.78843333333333 0.0 - - - - - - - 270.0 13 8 RNASEH2A ribonuclease H2, subunit A 3145 396 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A913.[MT7]-LQQSFPGIEVTVK[MT7].2b4_1.heavy 867.506 / 601.343 11763.0 33.59600067138672 48 18 10 10 10 4.869013598323876 20.538040812706768 0.0 3 0.9852707272123076 10.15633930714023 11763.0 25.519174999999997 0.0 - - - - - - - 360.0 23 6 RNASEH2A ribonuclease H2, subunit A 3147 397 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1045.[MT7]-GIDIIR.2y4_1.heavy 415.764 / 516.314 6664.0 27.790300369262695 40 14 10 10 6 3.935382026993297 25.410493648160962 0.0 5 0.9431943926258417 5.153344196295576 6664.0 17.820329175824387 4.0 - - - - - - - 333.0 83 3 RFC5 replication factor C (activator 1) 5, 36.5kDa 3149 397 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1045.[MT7]-GIDIIR.2b3_1.heavy 415.764 / 430.242 64974.0 27.790300369262695 40 14 10 10 6 3.935382026993297 25.410493648160962 0.0 5 0.9431943926258417 5.153344196295576 64974.0 102.34501710427608 0.0 - - - - - - - 333.0 129 3 RFC5 replication factor C (activator 1) 5, 36.5kDa 3151 397 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1045.[MT7]-GIDIIR.2y5_1.heavy 415.764 / 629.398 9330.0 27.790300369262695 40 14 10 10 6 3.935382026993297 25.410493648160962 0.0 5 0.9431943926258417 5.153344196295576 9330.0 12.313919675897367 2.0 - - - - - - - 333.0 24 4 RFC5 replication factor C (activator 1) 5, 36.5kDa 3153 397 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1045.[MT7]-GIDIIR.2b4_1.heavy 415.764 / 543.326 40317.0 27.790300369262695 40 14 10 10 6 3.935382026993297 25.410493648160962 0.0 5 0.9431943926258417 5.153344196295576 40317.0 30.63717352190903 0.0 - - - - - - - 666.0 80 2 RFC5 replication factor C (activator 1) 5, 36.5kDa 3155 398 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A916.[MT7]-NSDLLTSPDVGLLK[MT7].2y5_1.heavy 880.506 / 673.473 10620.0 34.481201171875 46 16 10 10 10 3.467489386611642 23.029892059645498 0.0 3 0.9666927093264065 6.743414509453446 10620.0 24.258727169986884 0.0 - - - - - - - 323.0 21 12 JUN jun proto-oncogene 3157 398 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A916.[MT7]-NSDLLTSPDVGLLK[MT7].2y9_1.heavy 880.506 / 1073.63 17155.0 34.481201171875 46 16 10 10 10 3.467489386611642 23.029892059645498 0.0 3 0.9666927093264065 6.743414509453446 17155.0 61.91202899593769 0.0 - - - - - - - 244.8 34 5 JUN jun proto-oncogene 3159 398 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A916.[MT7]-NSDLLTSPDVGLLK[MT7].2b5_1.heavy 880.506 / 687.379 20422.0 34.481201171875 46 16 10 10 10 3.467489386611642 23.029892059645498 0.0 3 0.9666927093264065 6.743414509453446 20422.0 38.13317373167137 0.0 - - - - - - - 306.0 40 8 JUN jun proto-oncogene 3161 398 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A916.[MT7]-NSDLLTSPDVGLLK[MT7].2y7_1.heavy 880.506 / 885.553 14704.0 34.481201171875 46 16 10 10 10 3.467489386611642 23.029892059645498 0.0 3 0.9666927093264065 6.743414509453446 14704.0 52.560924328605374 0.0 - - - - - - - 357.0 29 8 JUN jun proto-oncogene 3163 399 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1399.[MT7]-IIMLTC[CAM]AFLAC[CAM]K[MT7].3y3_1.heavy 576.987 / 522.283 60626.0 42.34339904785156 37 11 10 6 10 0.803042943342312 62.50763162775152 0.03759765625 3 0.871685077656174 3.4077414552264735 60626.0 362.1927375064778 0.0 - - - - - - - 222.33333333333334 121 6 CCNH cyclin H 3165 399 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1399.[MT7]-IIMLTC[CAM]AFLAC[CAM]K[MT7].3b4_1.heavy 576.987 / 615.402 17155.0 42.34339904785156 37 11 10 6 10 0.803042943342312 62.50763162775152 0.03759765625 3 0.871685077656174 3.4077414552264735 17155.0 80.33485585585586 0.0 - - - - - - - 233.4 34 5 CCNH cyclin H 3167 399 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1399.[MT7]-IIMLTC[CAM]AFLAC[CAM]K[MT7].3y4_1.heavy 576.987 / 635.367 23817.0 42.34339904785156 37 11 10 6 10 0.803042943342312 62.50763162775152 0.03759765625 3 0.871685077656174 3.4077414552264735 23817.0 80.29690558558559 0.0 - - - - - - - 208.5 47 8 CCNH cyclin H 3169 399 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1399.[MT7]-IIMLTC[CAM]AFLAC[CAM]K[MT7].3b3_1.heavy 576.987 / 502.318 20819.0 42.34339904785156 37 11 10 6 10 0.803042943342312 62.50763162775152 0.03759765625 3 0.871685077656174 3.4077414552264735 20819.0 81.40041441441441 0.0 - - - - - - - 281.9230769230769 41 13 CCNH cyclin H 3171 400 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A918.[MT7]-AFWDVMDEIDEK[MT7].3y6_1.heavy 595.958 / 892.438 3001.0 41.79215049743652 39 13 10 6 10 1.4205924504851346 45.3023514713405 0.035701751708984375 3 0.910929539218749 4.104100453135105 3001.0 13.768551951951952 0.0 - - - - - - - 250.0 6 4 FANCL Fanconi anemia, complementation group L 3173 400 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A918.[MT7]-AFWDVMDEIDEK[MT7].3y3_1.heavy 595.958 / 535.284 22009.0 41.79215049743652 39 13 10 6 10 1.4205924504851346 45.3023514713405 0.035701751708984375 3 0.910929539218749 4.104100453135105 22009.0 48.896941679389315 0.0 - - - - - - - 266.6 44 10 FANCL Fanconi anemia, complementation group L 3175 400 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A918.[MT7]-AFWDVMDEIDEK[MT7].3b4_1.heavy 595.958 / 664.321 17674.0 41.79215049743652 39 13 10 6 10 1.4205924504851346 45.3023514713405 0.035701751708984375 3 0.910929539218749 4.104100453135105 17674.0 45.94180089955022 0.0 - - - - - - - 646.125 35 8 FANCL Fanconi anemia, complementation group L 3177 400 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A918.[MT7]-AFWDVMDEIDEK[MT7].3b5_1.heavy 595.958 / 763.39 10504.0 41.79215049743652 39 13 10 6 10 1.4205924504851346 45.3023514713405 0.035701751708984375 3 0.910929539218749 4.104100453135105 10504.0 15.225288155922037 0.0 - - - - - - - 194.66666666666666 21 12 FANCL Fanconi anemia, complementation group L 3179 401 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1048.[MT7]-AEDASGR.2b3_1.heavy 425.213 / 460.216 14430.0 12.116375207901001 38 16 10 6 6 3.397971420099215 29.429323451190232 0.030699729919433594 5 0.9674071448517748 6.81733254886537 14430.0 44.97542852939013 0.0 - - - - - - - 172.7948717948718 28 39 FANCL Fanconi anemia, complementation group L 3181 401 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1048.[MT7]-AEDASGR.2y5_1.heavy 425.213 / 505.237 3608.0 12.116375207901001 38 16 10 6 6 3.397971420099215 29.429323451190232 0.030699729919433594 5 0.9674071448517748 6.81733254886537 3608.0 11.800882373123542 1.0 - - - - - - - 169.17241379310346 8 29 FANCL Fanconi anemia, complementation group L 3183 401 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1048.[MT7]-AEDASGR.2b4_1.heavy 425.213 / 531.253 3667.0 12.116375207901001 38 16 10 6 6 3.397971420099215 29.429323451190232 0.030699729919433594 5 0.9674071448517748 6.81733254886537 3667.0 2.836790050920486 4.0 - - - - - - - 718.1428571428571 27 7 FANCL Fanconi anemia, complementation group L 3185 401 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1048.[MT7]-AEDASGR.2y6_1.heavy 425.213 / 634.279 11532.0 12.116375207901001 38 16 10 6 6 3.397971420099215 29.429323451190232 0.030699729919433594 5 0.9674071448517748 6.81733254886537 11532.0 15.167578100180027 0.0 - - - - - - - 187.7 23 40 FANCL Fanconi anemia, complementation group L 3187 402 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1049.[MT7]-LVDSK[MT7].2b3_1.heavy 425.268 / 472.289 52348.0 19.462099075317383 37 17 2 10 8 3.0721527003644273 32.550465342473935 0.0 4 0.9768674113358776 8.098591296285383 52348.0 42.315361731237445 0.0 - - - - - - - 373.6 104 5 ELF1;ELF2;ELF4;FABP3;FABP5;LRP1;MAP2K7;DNAH7;COLEC12 E74-like factor 1 (ets domain transcription factor);E74-like factor 2 (ets domain transcription factor);E74-like factor 4 (ets domain transcription factor);fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor);fatty acid binding protein 5 (psoriasis-associated);low density lipoprotein receptor-related protein 1;mitogen-activated protein kinase kinase 7;dynein, axonemal, heavy chain 7;collectin sub-family member 12 3189 402 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1049.[MT7]-LVDSK[MT7].2y4_1.heavy 425.268 / 592.342 54426.0 19.462099075317383 37 17 2 10 8 3.0721527003644273 32.550465342473935 0.0 4 0.9768674113358776 8.098591296285383 54426.0 16.246797185526223 1.0 - - - - - - - 415.0 588 1 ELF1;ELF2;ELF4;FABP3;FABP5;LRP1;MAP2K7;DNAH7;COLEC12 E74-like factor 1 (ets domain transcription factor);E74-like factor 2 (ets domain transcription factor);E74-like factor 4 (ets domain transcription factor);fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor);fatty acid binding protein 5 (psoriasis-associated);low density lipoprotein receptor-related protein 1;mitogen-activated protein kinase kinase 7;dynein, axonemal, heavy chain 7;collectin sub-family member 12 3191 402 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1049.[MT7]-LVDSK[MT7].2y3_1.heavy 425.268 / 493.274 28875.0 19.462099075317383 37 17 2 10 8 3.0721527003644273 32.550465342473935 0.0 4 0.9768674113358776 8.098591296285383 28875.0 28.199793672627234 0.0 - - - - - - - 727.0 57 8 ELF1;ELF2;ELF4;FABP3;FABP5;LRP1;MAP2K7;DNAH7;COLEC12 E74-like factor 1 (ets domain transcription factor);E74-like factor 2 (ets domain transcription factor);E74-like factor 4 (ets domain transcription factor);fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor);fatty acid binding protein 5 (psoriasis-associated);low density lipoprotein receptor-related protein 1;mitogen-activated protein kinase kinase 7;dynein, axonemal, heavy chain 7;collectin sub-family member 12 3193 402 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1049.[MT7]-LVDSK[MT7].2y2_1.heavy 425.268 / 378.247 111552.0 19.462099075317383 37 17 2 10 8 3.0721527003644273 32.550465342473935 0.0 4 0.9768674113358776 8.098591296285383 111552.0 48.82753558356856 0.0 - - - - - - - 346.0 223 3 ELF1;ELF2;ELF4;FABP3;FABP5;LRP1;MAP2K7;DNAH7;COLEC12 E74-like factor 1 (ets domain transcription factor);E74-like factor 2 (ets domain transcription factor);E74-like factor 4 (ets domain transcription factor);fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor);fatty acid binding protein 5 (psoriasis-associated);low density lipoprotein receptor-related protein 1;mitogen-activated protein kinase kinase 7;dynein, axonemal, heavy chain 7;collectin sub-family member 12 3195 403 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1299.[MT7]-LRVQC[CAM]STC[CAM]R.3y6_1.heavy 441.896 / 811.318 4938.0 18.175600051879883 50 20 10 10 10 8.04894252252289 12.423992309570579 0.0 3 0.9954224027662831 18.23382459917151 4938.0 34.66503295301538 0.0 - - - - - - - 264.57142857142856 9 7 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3197 403 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1299.[MT7]-LRVQC[CAM]STC[CAM]R.3b3_1.heavy 441.896 / 513.363 6378.0 18.175600051879883 50 20 10 10 10 8.04894252252289 12.423992309570579 0.0 3 0.9954224027662831 18.23382459917151 6378.0 7.876409304040675 0.0 - - - - - - - 206.0 12 5 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3199 403 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1299.[MT7]-LRVQC[CAM]STC[CAM]R.3y4_1.heavy 441.896 / 523.229 27980.0 18.175600051879883 50 20 10 10 10 8.04894252252289 12.423992309570579 0.0 3 0.9954224027662831 18.23382459917151 27980.0 32.10902000906296 0.0 - - - - - - - 329.0 55 5 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3201 403 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1299.[MT7]-LRVQC[CAM]STC[CAM]R.3y5_1.heavy 441.896 / 683.26 18928.0 18.175600051879883 50 20 10 10 10 8.04894252252289 12.423992309570579 0.0 3 0.9954224027662831 18.23382459917151 18928.0 66.52132740877391 0.0 - - - - - - - 308.5 37 8 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3203 404 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10070.[MT7]-FVTPLK[MT7].2y4_1.heavy 496.823 / 602.399 51667.0 28.47599983215332 46 16 10 10 10 1.9079404334149415 41.30552703080451 0.0 3 0.969289797111303 7.024303638738176 51667.0 124.42939596851573 0.0 - - - - - - - 333.0 103 2 IGSF22;POLE3 immunoglobulin superfamily, member 22;polymerase (DNA directed), epsilon 3 (p17 subunit) 3205 404 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10070.[MT7]-FVTPLK[MT7].2y5_1.heavy 496.823 / 701.468 23667.0 28.47599983215332 46 16 10 10 10 1.9079404334149415 41.30552703080451 0.0 3 0.969289797111303 7.024303638738176 23667.0 52.136683213906934 0.0 - - - - - - - 333.0 47 5 IGSF22;POLE3 immunoglobulin superfamily, member 22;polymerase (DNA directed), epsilon 3 (p17 subunit) 3207 404 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10070.[MT7]-FVTPLK[MT7].2y3_1.heavy 496.823 / 501.352 95333.0 28.47599983215332 46 16 10 10 10 1.9079404334149415 41.30552703080451 0.0 3 0.969289797111303 7.024303638738176 95333.0 91.99634499999999 0.0 - - - - - - - 333.0 190 2 IGSF22;POLE3 immunoglobulin superfamily, member 22;polymerase (DNA directed), epsilon 3 (p17 subunit) 3209 404 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10070.[MT7]-FVTPLK[MT7].2y1_1.heavy 496.823 / 291.215 44000.0 28.47599983215332 46 16 10 10 10 1.9079404334149415 41.30552703080451 0.0 3 0.969289797111303 7.024303638738176 44000.0 17.132242523406962 0.0 - - - - - - - 333.0 88 1 IGSF22;POLE3 immunoglobulin superfamily, member 22;polymerase (DNA directed), epsilon 3 (p17 subunit) 3211 405 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1297.[MT7]-FVSLLQEAK[MT7].2y4_1.heavy 661.9 / 619.353 49740.0 34.8474006652832 48 18 10 10 10 4.007414499472516 19.969891444765068 0.0 3 0.9870965813202373 10.852801911774485 49740.0 60.85968223780657 0.0 - - - - - - - 281.8 99 5 E2F4;E2F5 E2F transcription factor 4, p107/p130-binding;E2F transcription factor 5, p130-binding 3213 405 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1297.[MT7]-FVSLLQEAK[MT7].2y8_1.heavy 661.9 / 1031.62 39671.0 34.8474006652832 48 18 10 10 10 4.007414499472516 19.969891444765068 0.0 3 0.9870965813202373 10.852801911774485 39671.0 140.4910005258574 0.0 - - - - - - - 261.6 79 10 E2F4;E2F5 E2F transcription factor 4, p107/p130-binding;E2F transcription factor 5, p130-binding 3215 405 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1297.[MT7]-FVSLLQEAK[MT7].2y5_1.heavy 661.9 / 732.437 61419.0 34.8474006652832 48 18 10 10 10 4.007414499472516 19.969891444765068 0.0 3 0.9870965813202373 10.852801911774485 61419.0 34.88356556055812 1.0 - - - - - - - 690.5714285714286 128 7 E2F4;E2F5 E2F transcription factor 4, p107/p130-binding;E2F transcription factor 5, p130-binding 3217 405 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1297.[MT7]-FVSLLQEAK[MT7].2y7_1.heavy 661.9 / 932.553 46920.0 34.8474006652832 48 18 10 10 10 4.007414499472516 19.969891444765068 0.0 3 0.9870965813202373 10.852801911774485 46920.0 258.556421467637 0.0 - - - - - - - 229.85714285714286 93 7 E2F4;E2F5 E2F transcription factor 4, p107/p130-binding;E2F transcription factor 5, p130-binding 3219 406 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1189.[MT7]-GDTAC[CAM]DLAR.2y8_1.heavy 561.77 / 921.409 5163.0 18.828100204467773 44 14 10 10 10 2.740043744368488 36.49576770645591 0.0 3 0.935280632944514 4.8247483811882335 5163.0 46.39217391304348 0.0 - - - - - - - 265.85714285714283 10 7 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 3221 406 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1189.[MT7]-GDTAC[CAM]DLAR.2b6_1.heavy 561.77 / 764.3 29122.0 18.828100204467773 44 14 10 10 10 2.740043744368488 36.49576770645591 0.0 3 0.935280632944514 4.8247483811882335 29122.0 55.342032280974806 0.0 - - - - - - - 324.7142857142857 58 7 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 3223 406 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1189.[MT7]-GDTAC[CAM]DLAR.2y6_1.heavy 561.77 / 705.335 6403.0 18.828100204467773 44 14 10 10 10 2.740043744368488 36.49576770645591 0.0 3 0.935280632944514 4.8247483811882335 6403.0 11.96601231983761 0.0 - - - - - - - 207.0 12 5 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 3225 406 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1189.[MT7]-GDTAC[CAM]DLAR.2y7_1.heavy 561.77 / 806.383 11153.0 18.828100204467773 44 14 10 10 10 2.740043744368488 36.49576770645591 0.0 3 0.935280632944514 4.8247483811882335 11153.0 19.633977273868968 0.0 - - - - - - - 275.6666666666667 22 6 CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 3227 407 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A910.[MT7]-TSGVLSQPHLPFFR.3y7_1.heavy 577.322 / 913.504 31704.0 35.79699993133545 41 15 10 6 10 4.963987952265183 20.145093211672215 0.038799285888671875 3 0.9507244570211422 5.536648927635254 31704.0 73.37037890206997 0.0 - - - - - - - 772.2857142857143 63 7 MAP2K7 mitogen-activated protein kinase kinase 7 3229 407 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A910.[MT7]-TSGVLSQPHLPFFR.3y6_1.heavy 577.322 / 816.451 10444.0 35.79699993133545 41 15 10 6 10 4.963987952265183 20.145093211672215 0.038799285888671875 3 0.9507244570211422 5.536648927635254 10444.0 5.102145593869731 1.0 - - - - - - - 266.14285714285717 20 7 MAP2K7 mitogen-activated protein kinase kinase 7 3231 407 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A910.[MT7]-TSGVLSQPHLPFFR.3b5_1.heavy 577.322 / 602.363 22939.0 35.79699993133545 41 15 10 6 10 4.963987952265183 20.145093211672215 0.038799285888671875 3 0.9507244570211422 5.536648927635254 22939.0 28.653960827383003 0.0 - - - - - - - 310.6666666666667 45 3 MAP2K7 mitogen-activated protein kinase kinase 7 3233 407 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A910.[MT7]-TSGVLSQPHLPFFR.3y4_1.heavy 577.322 / 566.308 77394.0 35.79699993133545 41 15 10 6 10 4.963987952265183 20.145093211672215 0.038799285888671875 3 0.9507244570211422 5.536648927635254 77394.0 86.8369251662422 0.0 - - - - - - - 745.6666666666666 154 3 MAP2K7 mitogen-activated protein kinase kinase 7 3235 408 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1187.[MT7]-SLGLLTTK[MT7].2y4_1.heavy 560.863 / 606.394 74876.0 29.76409912109375 46 16 10 10 10 2.130515698499639 37.6012333455375 0.0 3 0.9644474509290109 6.525771127406684 74876.0 62.20668116572423 0.0 - - - - - - - 328.0 149 2 E2F4;E2F5 E2F transcription factor 4, p107/p130-binding;E2F transcription factor 5, p130-binding 3237 408 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1187.[MT7]-SLGLLTTK[MT7].2y5_1.heavy 560.863 / 719.478 23317.0 29.76409912109375 46 16 10 10 10 2.130515698499639 37.6012333455375 0.0 3 0.9644474509290109 6.525771127406684 23317.0 29.63423896499239 0.0 - - - - - - - 328.0 46 4 E2F4;E2F5 E2F transcription factor 4, p107/p130-binding;E2F transcription factor 5, p130-binding 3239 408 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1187.[MT7]-SLGLLTTK[MT7].2b4_1.heavy 560.863 / 515.331 63710.0 29.76409912109375 46 16 10 10 10 2.130515698499639 37.6012333455375 0.0 3 0.9644474509290109 6.525771127406684 63710.0 92.49269035532994 0.0 - - - - - - - 328.0 127 2 E2F4;E2F5 E2F transcription factor 4, p107/p130-binding;E2F transcription factor 5, p130-binding 3241 408 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1187.[MT7]-SLGLLTTK[MT7].2y6_1.heavy 560.863 / 776.5 51888.0 29.76409912109375 46 16 10 10 10 2.130515698499639 37.6012333455375 0.0 3 0.9644474509290109 6.525771127406684 51888.0 110.56803652968037 0.0 - - - - - - - 780.0 103 8 E2F4;E2F5 E2F transcription factor 4, p107/p130-binding;E2F transcription factor 5, p130-binding 3243 409 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1183.[MT7]-LLILILK[MT7].2y4_1.heavy 557.414 / 630.467 27461.0 44.3661003112793 50 20 10 10 10 4.844889350974591 16.377779465251947 0.0 3 0.9908965946364422 12.924995912026123 27461.0 267.49730225032465 0.0 - - - - - - - 281.0 54 6 STAG3;STAG3L3;STAG3L2;NELL2;STAG3L1 stromal antigen 3;stromal antigen 3-like 3;stromal antigen 3-like 2;NEL-like 2 (chicken);stromal antigen 3-like 1 3245 409 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1183.[MT7]-LLILILK[MT7].2y5_1.heavy 557.414 / 743.551 15495.0 44.3661003112793 50 20 10 10 10 4.844889350974591 16.377779465251947 0.0 3 0.9908965946364422 12.924995912026123 15495.0 141.5688992144089 0.0 - - - - - - - 268.3333333333333 30 12 STAG3;STAG3L3;STAG3L2;NELL2;STAG3L1 stromal antigen 3;stromal antigen 3-like 3;stromal antigen 3-like 2;NEL-like 2 (chicken);stromal antigen 3-like 1 3247 409 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1183.[MT7]-LLILILK[MT7].2y3_1.heavy 557.414 / 517.383 27614.0 44.3661003112793 50 20 10 10 10 4.844889350974591 16.377779465251947 0.0 3 0.9908965946364422 12.924995912026123 27614.0 202.91184134891742 0.0 - - - - - - - 306.7142857142857 55 7 STAG3;STAG3L3;STAG3L2;NELL2;STAG3L1 stromal antigen 3;stromal antigen 3-like 3;stromal antigen 3-like 2;NEL-like 2 (chicken);stromal antigen 3-like 1 3249 409 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1183.[MT7]-LLILILK[MT7].2y6_1.heavy 557.414 / 856.635 14881.0 44.3661003112793 50 20 10 10 10 4.844889350974591 16.377779465251947 0.0 3 0.9908965946364422 12.924995912026123 14881.0 138.4470630814758 0.0 - - - - - - - 325.875 29 8 STAG3;STAG3L3;STAG3L2;NELL2;STAG3L1 stromal antigen 3;stromal antigen 3-like 3;stromal antigen 3-like 2;NEL-like 2 (chicken);stromal antigen 3-like 1 3251 410 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10069.[MT7]-EASEQK[MT7].2y4_1.heavy 490.269 / 635.348 6084.0 12.748499870300293 48 20 10 8 10 6.242018164151323 16.020459628636182 0.01959991455078125 3 0.9938213613083475 15.69249878808765 6084.0 75.53331859296482 0.0 - - - - - - - 177.27777777777777 12 18 POLE3 polymerase (DNA directed), epsilon 3 (p17 subunit) 3253 410 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10069.[MT7]-EASEQK[MT7].2y5_1.heavy 490.269 / 706.385 15061.0 12.748499870300293 48 20 10 8 10 6.242018164151323 16.020459628636182 0.01959991455078125 3 0.9938213613083475 15.69249878808765 15061.0 40.29698996655518 0.0 - - - - - - - 210.71428571428572 30 35 POLE3 polymerase (DNA directed), epsilon 3 (p17 subunit) 3255 410 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10069.[MT7]-EASEQK[MT7].2b4_1.heavy 490.269 / 561.264 3990.0 12.748499870300293 48 20 10 8 10 6.242018164151323 16.020459628636182 0.01959991455078125 3 0.9938213613083475 15.69249878808765 3990.0 16.700719315641752 0.0 - - - - - - - 215.32 7 25 POLE3 polymerase (DNA directed), epsilon 3 (p17 subunit) 3257 410 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10069.[MT7]-EASEQK[MT7].2b5_1.heavy 490.269 / 689.322 2394.0 12.748499870300293 48 20 10 8 10 6.242018164151323 16.020459628636182 0.01959991455078125 3 0.9938213613083475 15.69249878808765 2394.0 3.202675585284281 4.0 - - - - - - - 712.2857142857143 17 7 POLE3 polymerase (DNA directed), epsilon 3 (p17 subunit) 3259 411 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1186.[MT7]-SEGFDTYR.2b4_1.heavy 559.765 / 565.274 10613.0 22.739900588989258 48 20 10 10 8 7.473574390666638 13.380478305653163 0.0 4 0.9944029840881925 16.488506813065847 10613.0 40.47807394359868 0.0 - - - - - - - 340.8888888888889 21 9 PCNA proliferating cell nuclear antigen 3261 411 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1186.[MT7]-SEGFDTYR.2y6_1.heavy 559.765 / 758.347 20046.0 22.739900588989258 48 20 10 10 8 7.473574390666638 13.380478305653163 0.0 4 0.9944029840881925 16.488506813065847 20046.0 19.44839509195626 0.0 - - - - - - - 283.2 40 5 PCNA proliferating cell nuclear antigen 3263 411 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1186.[MT7]-SEGFDTYR.2b5_1.heavy 559.765 / 680.301 33017.0 22.739900588989258 48 20 10 10 8 7.473574390666638 13.380478305653163 0.0 4 0.9944029840881925 16.488506813065847 33017.0 60.221887592788974 0.0 - - - - - - - 808.7142857142857 66 7 PCNA proliferating cell nuclear antigen 3265 411 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1186.[MT7]-SEGFDTYR.2y7_1.heavy 559.765 / 887.389 11792.0 22.739900588989258 48 20 10 10 8 7.473574390666638 13.380478305653163 0.0 4 0.9944029840881925 16.488506813065847 11792.0 53.29717514124294 1.0 - - - - - - - 314.6666666666667 35 6 PCNA proliferating cell nuclear antigen 3267 412 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 BLAT_ECOLX.VAGPLLRSALPAGWFIADK.3y7.peptide 661.38 / 836.43 357223.0 39.43926747639974 18 -3 10 3 8 null 0.0 0.0644989013671875 4 0.0 0.0 357223.0 219.05510778069882 0.0 - - - - - - - 1433.0 714 1 3269 412 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 BLAT_ECOLX.VAGPLLRSALPAGWFIADK.3y9.peptide 661.38 / 502.76 655365.0 39.43926747639974 18 -3 10 3 8 null 0.0 0.0644989013671875 4 0.0 0.0 655365.0 265.93891483645257 0.0 - - - - - - - 2867.0 1310 1 3271 412 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 BLAT_ECOLX.VAGPLLRSALPAGWFIADK.3y17.peptide 661.38 / 906.51 522684.0 39.43926747639974 18 -3 10 3 8 null 0.0 0.0644989013671875 4 0.0 0.0 522684.0 25.3842119205298 1.0 - - - - - - - 2867.0 1089 1 3273 413 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1180.[MT7]-IIEPIQSR.2b3_1.heavy 550.333 / 500.32 10681.0 27.88920021057129 36 8 10 10 8 0.5111969093490681 94.74428375741293 0.0 4 0.7976006689752949 2.695533319460902 10681.0 7.225941056370115 1.0 - - - - - - - 314.0 76 2 RFC2 replication factor C (activator 1) 2, 40kDa 3275 413 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1180.[MT7]-IIEPIQSR.2y5_1.heavy 550.333 / 600.346 N/A 27.88920021057129 36 8 10 10 8 0.5111969093490681 94.74428375741293 0.0 4 0.7976006689752949 2.695533319460902 0.0 0.0 41.0 - - - - - - - 314.0 144 4 RFC2 replication factor C (activator 1) 2, 40kDa 3277 413 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1180.[MT7]-IIEPIQSR.2y6_1.heavy 550.333 / 729.389 161467.0 27.88920021057129 36 8 10 10 8 0.5111969093490681 94.74428375741293 0.0 4 0.7976006689752949 2.695533319460902 161467.0 98.4913262983508 1.0 - - - - - - - 314.0 364 4 RFC2 replication factor C (activator 1) 2, 40kDa 3279 413 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1180.[MT7]-IIEPIQSR.2y7_1.heavy 550.333 / 842.473 123142.0 27.88920021057129 36 8 10 10 8 0.5111969093490681 94.74428375741293 0.0 4 0.7976006689752949 2.695533319460902 123142.0 102.5161065813839 0.0 - - - - - - - 762.5714285714286 246 7 RFC2 replication factor C (activator 1) 2, 40kDa 3281 414 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1182.[MT7]-TSADGNEK[MT7].2y4_1.heavy 555.287 / 591.322 19347.0 12.69480037689209 42 14 10 10 8 1.81424428427721 44.0172237403422 0.0 4 0.9438953921142624 5.185747853238881 19347.0 70.0674242294886 0.0 - - - - - - - 232.86363636363637 38 22 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 3283 414 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1182.[MT7]-TSADGNEK[MT7].2y5_1.heavy 555.287 / 706.349 4682.0 12.69480037689209 42 14 10 10 8 1.81424428427721 44.0172237403422 0.0 4 0.9438953921142624 5.185747853238881 4682.0 13.692016759627442 0.0 - - - - - - - 731.8571428571429 9 7 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 3285 414 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1182.[MT7]-TSADGNEK[MT7].2b4_1.heavy 555.287 / 519.253 17403.0 12.69480037689209 42 14 10 10 8 1.81424428427721 44.0172237403422 0.0 4 0.9438953921142624 5.185747853238881 17403.0 2.463269639065817 0.0 - - - - - - - 732.0 34 14 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 3287 414 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1182.[MT7]-TSADGNEK[MT7].2y7_1.heavy 555.287 / 864.418 10866.0 12.69480037689209 42 14 10 10 8 1.81424428427721 44.0172237403422 0.0 4 0.9438953921142624 5.185747853238881 10866.0 45.09100420645903 1.0 - - - - - - - 206.16666666666666 38 18 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 3289 415 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A843.[MT7]-LDILELLEK[MT7].2y5_1.heavy 687.428 / 775.468 68211.0 45.59109878540039 48 18 10 10 10 4.165137506589466 19.19865099758358 0.0 3 0.9824221949650656 9.294838027234478 68211.0 141.90230294548599 0.0 - - - - - - - 722.125 136 8 ORC4 origin recognition complex, subunit 4 3291 415 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A843.[MT7]-LDILELLEK[MT7].2y3_1.heavy 687.428 / 533.341 49920.0 45.59109878540039 48 18 10 10 10 4.165137506589466 19.19865099758358 0.0 3 0.9824221949650656 9.294838027234478 49920.0 196.352 0.0 - - - - - - - 241.0 99 8 ORC4 origin recognition complex, subunit 4 3293 415 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A843.[MT7]-LDILELLEK[MT7].2y6_1.heavy 687.428 / 888.552 62022.0 45.59109878540039 48 18 10 10 10 4.165137506589466 19.19865099758358 0.0 3 0.9824221949650656 9.294838027234478 62022.0 109.74010603612865 0.0 - - - - - - - 344.1666666666667 124 6 ORC4 origin recognition complex, subunit 4 3295 415 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A843.[MT7]-LDILELLEK[MT7].2b5_1.heavy 687.428 / 728.431 63535.0 45.59109878540039 48 18 10 10 10 4.165137506589466 19.19865099758358 0.0 3 0.9824221949650656 9.294838027234478 63535.0 168.96631878714507 0.0 - - - - - - - 314.57142857142856 127 7 ORC4 origin recognition complex, subunit 4 3297 416 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A844.[MT7]-LEAAILSGWK[MT7].2y4_1.heavy 688.413 / 621.348 51900.0 38.23590087890625 44 14 10 10 10 1.6409114411628094 44.72307993508052 0.0 3 0.931379478024192 4.684034165297486 51900.0 154.46111806082482 0.0 - - - - - - - 362.8333333333333 103 12 FBXO4 F-box protein 4 3299 416 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A844.[MT7]-LEAAILSGWK[MT7].2y5_1.heavy 688.413 / 734.432 39328.0 38.23590087890625 44 14 10 10 10 1.6409114411628094 44.72307993508052 0.0 3 0.931379478024192 4.684034165297486 39328.0 95.74879757581587 0.0 - - - - - - - 806.0 78 8 FBXO4 F-box protein 4 3301 416 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A844.[MT7]-LEAAILSGWK[MT7].2y9_1.heavy 688.413 / 1118.63 14506.0 38.23590087890625 44 14 10 10 10 1.6409114411628094 44.72307993508052 0.0 3 0.931379478024192 4.684034165297486 14506.0 48.26067794370292 0.0 - - - - - - - 234.27272727272728 29 11 FBXO4 F-box protein 4 3303 416 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A844.[MT7]-LEAAILSGWK[MT7].2b4_1.heavy 688.413 / 529.31 44325.0 38.23590087890625 44 14 10 10 10 1.6409114411628094 44.72307993508052 0.0 3 0.931379478024192 4.684034165297486 44325.0 79.36982799401527 0.0 - - - - - - - 389.6666666666667 88 12 FBXO4 F-box protein 4 3305 417 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A841.[MT7]-FLLSYSIIK[MT7].3y3_1.heavy 457.954 / 517.383 13373.0 39.359750747680664 43 17 10 6 10 2.9351911602695013 34.069331276814786 0.031101226806640625 3 0.9718739095255395 7.341494503483167 13373.0 55.895909449751315 0.0 - - - - - - - 278.3333333333333 26 12 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3307 417 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A841.[MT7]-FLLSYSIIK[MT7].3b4_1.heavy 457.954 / 605.378 16079.0 39.359750747680664 43 17 10 6 10 2.9351911602695013 34.069331276814786 0.031101226806640625 3 0.9718739095255395 7.341494503483167 16079.0 67.22578015865491 0.0 - - - - - - - 238.5 32 6 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3309 417 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A841.[MT7]-FLLSYSIIK[MT7].3y4_1.heavy 457.954 / 604.415 10348.0 39.359750747680664 43 17 10 6 10 2.9351911602695013 34.069331276814786 0.031101226806640625 3 0.9718739095255395 7.341494503483167 10348.0 15.15397489539749 1.0 - - - - - - - 318.3076923076923 20 13 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3311 417 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A841.[MT7]-FLLSYSIIK[MT7].3b3_1.heavy 457.954 / 518.346 19104.0 39.359750747680664 43 17 10 6 10 2.9351911602695013 34.069331276814786 0.031101226806640625 3 0.9718739095255395 7.341494503483167 19104.0 66.0452948668582 0.0 - - - - - - - 274.8181818181818 38 11 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3313 418 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1041.[MT7]-VQPGK[MT7].2y4_1.heavy 408.763 / 573.348 32029.0 14.883600234985352 39 13 10 10 6 0.6298906491317862 78.29108920088254 0.0 5 0.9254835074479019 4.492640910124999 32029.0 64.76226691026758 0.0 - - - - - - - 308.5833333333333 64 12 PARK2;CILP parkinson protein 2, E3 ubiquitin protein ligase (parkin);cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 3315 418 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1041.[MT7]-VQPGK[MT7].2y3_1.heavy 408.763 / 445.289 208913.0 14.883600234985352 39 13 10 10 6 0.6298906491317862 78.29108920088254 0.0 5 0.9254835074479019 4.492640910124999 208913.0 348.8230549818075 0.0 - - - - - - - 375.6666666666667 417 6 PARK2;CILP parkinson protein 2, E3 ubiquitin protein ligase (parkin);cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 3317 418 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1041.[MT7]-VQPGK[MT7].2y2_1.heavy 408.763 / 348.236 18348.0 14.883600234985352 39 13 10 10 6 0.6298906491317862 78.29108920088254 0.0 5 0.9254835074479019 4.492640910124999 18348.0 62.01472049689441 2.0 - - - - - - - 322.0 71 15 PARK2;CILP parkinson protein 2, E3 ubiquitin protein ligase (parkin);cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 3319 418 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1041.[MT7]-VQPGK[MT7].2y1_1.heavy 408.763 / 291.215 10945.0 14.883600234985352 39 13 10 10 6 0.6298906491317862 78.29108920088254 0.0 5 0.9254835074479019 4.492640910124999 10945.0 9.312758054426023 9.0 - - - - - - - 1816.0 36 7 PARK2;CILP parkinson protein 2, E3 ubiquitin protein ligase (parkin);cartilage intermediate layer protein, nucleotide pyrophosphohydrolase 3321 419 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1043.[MT7]-VGDVQR.2y4_1.heavy 409.236 / 517.273 7906.0 16.368600845336914 47 17 10 10 10 4.122640327981375 18.408382286092635 0.0 3 0.9789459562820814 8.49042988719747 7906.0 18.61331230090194 1.0 - - - - - - - 289.5 15 4 GADD45G growth arrest and DNA-damage-inducible, gamma 3323 419 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1043.[MT7]-VGDVQR.2b3_1.heavy 409.236 / 416.226 142313.0 16.368600845336914 47 17 10 10 10 4.122640327981375 18.408382286092635 0.0 3 0.9789459562820814 8.49042988719747 142313.0 138.92088566215307 0.0 - - - - - - - 289.5 284 4 GADD45G growth arrest and DNA-damage-inducible, gamma 3325 419 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1043.[MT7]-VGDVQR.2y5_1.heavy 409.236 / 574.294 167574.0 16.368600845336914 47 17 10 10 10 4.122640327981375 18.408382286092635 0.0 3 0.9789459562820814 8.49042988719747 167574.0 228.03025711664927 0.0 - - - - - - - 321.6666666666667 335 3 GADD45G growth arrest and DNA-damage-inducible, gamma 3327 419 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1043.[MT7]-VGDVQR.2b4_1.heavy 409.236 / 515.295 47052.0 16.368600845336914 47 17 10 10 10 4.122640327981375 18.408382286092635 0.0 3 0.9789459562820814 8.49042988719747 47052.0 50.34058064516129 0.0 - - - - - - - 386.0 94 2 GADD45G growth arrest and DNA-damage-inducible, gamma 3329 420 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1042.[MT7]-LIAAER.2b3_1.heavy 408.757 / 442.315 19456.0 22.50189971923828 48 18 10 10 10 4.366707869573325 22.900547274249213 0.0 3 0.9894313963942957 11.994173626697808 19456.0 36.76463066357033 0.0 - - - - - - - 351.5 38 8 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3331 420 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1042.[MT7]-LIAAER.2y4_1.heavy 408.757 / 446.236 58134.0 22.50189971923828 48 18 10 10 10 4.366707869573325 22.900547274249213 0.0 3 0.9894313963942957 11.994173626697808 58134.0 50.63043379655198 0.0 - - - - - - - 338.44444444444446 116 9 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3333 420 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1042.[MT7]-LIAAER.2y5_1.heavy 408.757 / 559.32 116269.0 22.50189971923828 48 18 10 10 10 4.366707869573325 22.900547274249213 0.0 3 0.9894313963942957 11.994173626697808 116269.0 146.46248784827884 0.0 - - - - - - - 312.3333333333333 232 6 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3335 420 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1042.[MT7]-LIAAER.2b4_1.heavy 408.757 / 513.352 18987.0 22.50189971923828 48 18 10 10 10 4.366707869573325 22.900547274249213 0.0 3 0.9894313963942957 11.994173626697808 18987.0 70.31196743225179 0.0 - - - - - - - 435.42857142857144 37 14 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3337 421 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1033.[MT7]-DLETR.2b3_1.heavy 389.215 / 502.263 143083.0 16.368600845336914 46 16 10 10 10 1.7376168586069314 45.29479120086536 0.0 3 0.9645669339967109 6.536830518682256 143083.0 51.1955459795 0.0 - - - - - - - 969.0 286 1 CNGA3;CDC26;TMEM200B;CEP70 cyclic nucleotide gated channel alpha 3;cell division cycle 26 homolog (S. cerevisiae);transmembrane protein 200B;centrosomal protein 70kDa 3339 421 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1033.[MT7]-DLETR.2y4_1.heavy 389.215 / 518.293 62623.0 16.368600845336914 46 16 10 10 10 1.7376168586069314 45.29479120086536 0.0 3 0.9645669339967109 6.536830518682256 62623.0 33.588755509903535 0.0 - - - - - - - 271.6 125 5 CNGA3;CDC26;TMEM200B;CEP70 cyclic nucleotide gated channel alpha 3;cell division cycle 26 homolog (S. cerevisiae);transmembrane protein 200B;centrosomal protein 70kDa 3341 421 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1033.[MT7]-DLETR.2y3_1.heavy 389.215 / 405.209 11633.0 16.368600845336914 46 16 10 10 10 1.7376168586069314 45.29479120086536 0.0 3 0.9645669339967109 6.536830518682256 11633.0 11.349499417734293 1.0 - - - - - - - 775.6666666666666 25 9 CNGA3;CDC26;TMEM200B;CEP70 cyclic nucleotide gated channel alpha 3;cell division cycle 26 homolog (S. cerevisiae);transmembrane protein 200B;centrosomal protein 70kDa 3343 421 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1033.[MT7]-DLETR.2y2_1.heavy 389.215 / 276.167 198144.0 16.368600845336914 46 16 10 10 10 1.7376168586069314 45.29479120086536 0.0 3 0.9645669339967109 6.536830518682256 198144.0 55.360003339544136 0.0 - - - - - - - 388.0 396 1 CNGA3;CDC26;TMEM200B;CEP70 cyclic nucleotide gated channel alpha 3;cell division cycle 26 homolog (S. cerevisiae);transmembrane protein 200B;centrosomal protein 70kDa 3345 422 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1034.[MT7]-IVQQR.2b3_1.heavy 394.249 / 485.32 23775.0 16.674800872802734 48 20 10 10 8 14.71988098979833 6.793533186124628 0.0 4 0.9989250350767659 37.63798035286301 23775.0 45.50874097864004 1.0 - - - - - - - 297.0 72 4 FANCL Fanconi anemia, complementation group L 3347 422 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1034.[MT7]-IVQQR.2y4_1.heavy 394.249 / 530.305 130962.0 16.674800872802734 48 20 10 10 8 14.71988098979833 6.793533186124628 0.0 4 0.9989250350767659 37.63798035286301 130962.0 439.9756233147284 0.0 - - - - - - - 254.57142857142858 261 7 FANCL Fanconi anemia, complementation group L 3349 422 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1034.[MT7]-IVQQR.2b4_1.heavy 394.249 / 613.379 11888.0 16.674800872802734 48 20 10 10 8 14.71988098979833 6.793533186124628 0.0 4 0.9989250350767659 37.63798035286301 11888.0 18.55057652076433 1.0 - - - - - - - 330.0 38 9 FANCL Fanconi anemia, complementation group L 3351 422 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1034.[MT7]-IVQQR.2y3_1.heavy 394.249 / 431.236 30908.0 16.674800872802734 48 20 10 10 8 14.71988098979833 6.793533186124628 0.0 4 0.9989250350767659 37.63798035286301 30908.0 54.054424744690984 0.0 - - - - - - - 297.0 61 4 FANCL Fanconi anemia, complementation group L 3353 423 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A901.[MT7]-LTDFNFLMVLGK[MT7].3b6_1.heavy 562.656 / 882.448 28596.0 46.71369934082031 47 17 10 10 10 2.76813432262294 36.125414573540354 0.0 3 0.9717777678288734 7.328919756927376 28596.0 300.41631118881116 0.0 - - - - - - - 234.33333333333334 57 12 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 3355 423 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A901.[MT7]-LTDFNFLMVLGK[MT7].3b4_1.heavy 562.656 / 621.336 10430.0 46.71369934082031 47 17 10 10 10 2.76813432262294 36.125414573540354 0.0 3 0.9717777678288734 7.328919756927376 10430.0 165.81025641025641 0.0 - - - - - - - 221.11111111111111 20 9 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 3357 423 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A901.[MT7]-LTDFNFLMVLGK[MT7].3b5_1.heavy 562.656 / 735.379 41370.0 46.71369934082031 47 17 10 10 10 2.76813432262294 36.125414573540354 0.0 3 0.9717777678288734 7.328919756927376 41370.0 373.9471284481711 0.0 - - - - - - - 281.4 82 5 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 3359 423 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A901.[MT7]-LTDFNFLMVLGK[MT7].3y5_1.heavy 562.656 / 691.429 23674.0 46.71369934082031 47 17 10 10 10 2.76813432262294 36.125414573540354 0.0 3 0.9717777678288734 7.328919756927376 23674.0 221.00996810817705 0.0 - - - - - - - 175.66666666666666 47 6 PRKCA;PRKCB protein kinase C, alpha;protein kinase C, beta 3361 424 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1035.[MT7]-SPAVK[MT7].2y4_1.heavy 395.257 / 558.373 130128.0 15.510600090026855 36 8 10 10 8 1.0143521743251225 60.66113468874984 0.0 4 0.7859311694189874 2.6182727644821298 130128.0 195.61041800643088 0.0 - - - - - - - 178.0 260 4 LAMA1;UBE2J1;NOLC1 laminin, alpha 1;ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast);nucleolar and coiled-body phosphoprotein 1 3363 424 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1035.[MT7]-SPAVK[MT7].2b4_1.heavy 395.257 / 499.3 6400.0 15.510600090026855 36 8 10 10 8 1.0143521743251225 60.66113468874984 0.0 4 0.7859311694189874 2.6182727644821298 6400.0 22.69418386491557 1.0 - - - - - - - 583.8571428571429 48 7 LAMA1;UBE2J1;NOLC1 laminin, alpha 1;ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast);nucleolar and coiled-body phosphoprotein 1 3365 424 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1035.[MT7]-SPAVK[MT7].2y3_1.heavy 395.257 / 461.32 14577.0 15.510600090026855 36 8 10 10 8 1.0143521743251225 60.66113468874984 0.0 4 0.7859311694189874 2.6182727644821298 14577.0 25.254355749835067 0.0 - - - - - - - 660.1428571428571 29 7 LAMA1;UBE2J1;NOLC1 laminin, alpha 1;ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast);nucleolar and coiled-body phosphoprotein 1 3367 424 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1035.[MT7]-SPAVK[MT7].2y1_1.heavy 395.257 / 291.215 31821.0 15.510600090026855 36 8 10 10 8 1.0143521743251225 60.66113468874984 0.0 4 0.7859311694189874 2.6182727644821298 31821.0 11.045023302559708 3.0 - - - - - - - 1778.0 71 1 LAMA1;UBE2J1;NOLC1 laminin, alpha 1;ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast);nucleolar and coiled-body phosphoprotein 1 3369 425 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A900.[MT7]-VFEHFLENLDK[MT7].3y6_1.heavy 560.306 / 875.495 15550.0 37.88865089416504 39 13 10 6 10 2.4052269710400878 41.57611784835308 0.03299713134765625 3 0.9192742036744445 4.314102012456152 15550.0 34.83706720977597 0.0 - - - - - - - 273.0 31 15 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3371 425 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A900.[MT7]-VFEHFLENLDK[MT7].3b4_1.heavy 560.306 / 657.348 58108.0 37.88865089416504 39 13 10 6 10 2.4052269710400878 41.57611784835308 0.03299713134765625 3 0.9192742036744445 4.314102012456152 58108.0 156.2170264765784 0.0 - - - - - - - 841.8571428571429 116 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3373 425 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A900.[MT7]-VFEHFLENLDK[MT7].3b3_1.heavy 560.306 / 520.289 61382.0 37.88865089416504 39 13 10 6 10 2.4052269710400878 41.57611784835308 0.03299713134765625 3 0.9192742036744445 4.314102012456152 61382.0 111.23904598781056 0.0 - - - - - - - 350.7142857142857 122 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3375 425 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A900.[MT7]-VFEHFLENLDK[MT7].3y5_1.heavy 560.306 / 762.411 39285.0 37.88865089416504 39 13 10 6 10 2.4052269710400878 41.57611784835308 0.03299713134765625 3 0.9192742036744445 4.314102012456152 39285.0 163.60011383773357 0.0 - - - - - - - 297.6363636363636 78 11 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3377 426 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A907.[MT7]-EYGASPVLSQGVDPR.2b4_1.heavy 859.945 / 565.274 15772.0 26.72249984741211 48 18 10 10 10 5.391620728789059 18.547298675153602 0.0 3 0.9801107199732205 8.736357195607939 15772.0 30.85826086956522 0.0 - - - - - - - 322.0 31 3 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3379 426 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A907.[MT7]-EYGASPVLSQGVDPR.2b7_1.heavy 859.945 / 848.427 7081.0 26.72249984741211 48 18 10 10 10 5.391620728789059 18.547298675153602 0.0 3 0.9801107199732205 8.736357195607939 7081.0 18.693788980703847 0.0 - - - - - - - 322.0 14 5 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3381 426 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A907.[MT7]-EYGASPVLSQGVDPR.2b5_1.heavy 859.945 / 652.306 19313.0 26.72249984741211 48 18 10 10 10 5.391620728789059 18.547298675153602 0.0 3 0.9801107199732205 8.736357195607939 19313.0 70.47445652173913 0.0 - - - - - - - 322.0 38 5 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3383 426 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A907.[MT7]-EYGASPVLSQGVDPR.2y11_1.heavy 859.945 / 1154.62 4184.0 26.72249984741211 48 18 10 10 10 5.391620728789059 18.547298675153602 0.0 3 0.9801107199732205 8.736357195607939 4184.0 12.1911754022738 1.0 - - - - - - - 322.0 10 2 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3385 427 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A906.[MT7]-GISAFPESDNLFK[MT7].3y3_1.heavy 571.641 / 551.367 19301.0 35.44862461090088 46 20 10 6 10 9.582530746078458 10.435656576518042 0.038501739501953125 3 0.9924305084125543 14.176031985037408 19301.0 17.797855495251873 0.0 - - - - - - - 749.5555555555555 38 9 UBE2C ubiquitin-conjugating enzyme E2C 3387 427 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A906.[MT7]-GISAFPESDNLFK[MT7].3y6_1.heavy 571.641 / 867.469 19301.0 35.44862461090088 46 20 10 6 10 9.582530746078458 10.435656576518042 0.038501739501953125 3 0.9924305084125543 14.176031985037408 19301.0 68.96890666666667 0.0 - - - - - - - 257.5 38 8 UBE2C ubiquitin-conjugating enzyme E2C 3389 427 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A906.[MT7]-GISAFPESDNLFK[MT7].3b5_1.heavy 571.641 / 620.352 105312.0 35.44862461090088 46 20 10 6 10 9.582530746078458 10.435656576518042 0.038501739501953125 3 0.9924305084125543 14.176031985037408 105312.0 124.50408881484759 0.0 - - - - - - - 696.1428571428571 210 7 UBE2C ubiquitin-conjugating enzyme E2C 3391 427 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A906.[MT7]-GISAFPESDNLFK[MT7].3y4_1.heavy 571.641 / 665.41 17427.0 35.44862461090088 46 20 10 6 10 9.582530746078458 10.435656576518042 0.038501739501953125 3 0.9924305084125543 14.176031985037408 17427.0 18.863745551601422 0.0 - - - - - - - 281.0 34 6 UBE2C ubiquitin-conjugating enzyme E2C 3393 428 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1038.[MT7]-VADSK[MT7].2b3_1.heavy 404.244 / 430.242 41866.0 14.467700004577637 47 17 10 10 10 2.912420763241132 34.335698077057195 0.0 3 0.9791886509578082 8.539966656456972 41866.0 82.32237037037038 0.0 - - - - - - - 657.5714285714286 83 7 RNASEH2A;PSMC6;ABCG2 ribonuclease H2, subunit A;proteasome (prosome, macropain) 26S subunit, ATPase, 6;ATP-binding cassette, sub-family G (WHITE), member 2 3395 428 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1038.[MT7]-VADSK[MT7].2y4_1.heavy 404.244 / 564.311 52703.0 14.467700004577637 47 17 10 10 10 2.912420763241132 34.335698077057195 0.0 3 0.9791886509578082 8.539966656456972 52703.0 77.66124035374871 0.0 - - - - - - - 1187.5714285714287 105 7 RNASEH2A;PSMC6;ABCG2 ribonuclease H2, subunit A;proteasome (prosome, macropain) 26S subunit, ATPase, 6;ATP-binding cassette, sub-family G (WHITE), member 2 3397 428 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1038.[MT7]-VADSK[MT7].2b4_1.heavy 404.244 / 517.274 2524.0 14.467700004577637 47 17 10 10 10 2.912420763241132 34.335698077057195 0.0 3 0.9791886509578082 8.539966656456972 2524.0 1.8871439756242303 13.0 - - - - - - - 721.2857142857143 14 7 RNASEH2A;PSMC6;ABCG2 ribonuclease H2, subunit A;proteasome (prosome, macropain) 26S subunit, ATPase, 6;ATP-binding cassette, sub-family G (WHITE), member 2 3399 428 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1038.[MT7]-VADSK[MT7].2y3_1.heavy 404.244 / 493.274 12174.0 14.467700004577637 47 17 10 10 10 2.912420763241132 34.335698077057195 0.0 3 0.9791886509578082 8.539966656456972 12174.0 24.616306950287115 0.0 - - - - - - - 266.9 24 10 RNASEH2A;PSMC6;ABCG2 ribonuclease H2, subunit A;proteasome (prosome, macropain) 26S subunit, ATPase, 6;ATP-binding cassette, sub-family G (WHITE), member 2 3401 429 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A905.[MT7]-DIC[CAM]NDVLSLLEK[MT7].3b6_1.heavy 569.646 / 861.389 19327.0 42.654598236083984 46 16 10 10 10 2.138748103829818 38.22735808295715 0.0 3 0.9629890634140639 6.395119718643536 19327.0 132.6122995461422 0.0 - - - - - - - 255.0909090909091 38 11 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3403 429 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A905.[MT7]-DIC[CAM]NDVLSLLEK[MT7].3b4_1.heavy 569.646 / 647.294 6773.0 42.654598236083984 46 16 10 10 10 2.138748103829818 38.22735808295715 0.0 3 0.9629890634140639 6.395119718643536 6773.0 59.520303030303026 0.0 - - - - - - - 259.42857142857144 13 7 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3405 429 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A905.[MT7]-DIC[CAM]NDVLSLLEK[MT7].3b5_1.heavy 569.646 / 762.321 46583.0 42.654598236083984 46 16 10 10 10 2.138748103829818 38.22735808295715 0.0 3 0.9629890634140639 6.395119718643536 46583.0 324.544639408614 0.0 - - - - - - - 212.14285714285714 93 7 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3407 429 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A905.[MT7]-DIC[CAM]NDVLSLLEK[MT7].3y5_1.heavy 569.646 / 733.458 26265.0 42.654598236083984 46 16 10 10 10 2.138748103829818 38.22735808295715 0.0 3 0.9629890634140639 6.395119718643536 26265.0 60.18377903354988 0.0 - - - - - - - 192.5 52 6 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3409 430 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1039.[MT7]-IATSK[MT7].2y4_1.heavy 404.263 / 550.332 148904.0 16.82990074157715 42 20 8 10 4 10.382518928284558 9.631574061240109 0.0 9 0.9918775341955711 13.684345270855347 148904.0 28.776813788089225 0.0 - - - - - - - 265.3333333333333 297 3 UBE2U;BCO2;MFSD5 ubiquitin-conjugating enzyme E2U (putative);beta-carotene oxygenase 2;major facilitator superfamily domain containing 5 3411 430 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1039.[MT7]-IATSK[MT7].2b4_1.heavy 404.263 / 517.31 4374.0 16.82990074157715 42 20 8 10 4 10.382518928284558 9.631574061240109 0.0 9 0.9918775341955711 13.684345270855347 4374.0 2.11262600952179 8.0 - - - - - - - 238.8 102 5 UBE2U;BCO2;MFSD5 ubiquitin-conjugating enzyme E2U (putative);beta-carotene oxygenase 2;major facilitator superfamily domain containing 5 3413 430 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1039.[MT7]-IATSK[MT7].2y3_1.heavy 404.263 / 479.295 45129.0 16.82990074157715 42 20 8 10 4 10.382518928284558 9.631574061240109 0.0 9 0.9918775341955711 13.684345270855347 45129.0 34.94141592752354 0.0 - - - - - - - 861.3333333333334 90 6 UBE2U;BCO2;MFSD5 ubiquitin-conjugating enzyme E2U (putative);beta-carotene oxygenase 2;major facilitator superfamily domain containing 5 3415 430 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1039.[MT7]-IATSK[MT7].2y1_1.heavy 404.263 / 291.215 N/A 16.82990074157715 42 20 8 10 4 10.382518928284558 9.631574061240109 0.0 9 0.9918775341955711 13.684345270855347 31013.0 3.1689194956371134 12.0 - - - - - - - 4970.0 413 1 UBE2U;BCO2;MFSD5 ubiquitin-conjugating enzyme E2U (putative);beta-carotene oxygenase 2;major facilitator superfamily domain containing 5 3417 431 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A904.[MT7]-DWEGLTSLLLEK[MT7].3y3_1.heavy 564.653 / 533.341 89261.0 43.27519989013672 43 13 10 10 10 1.714449064676034 46.123036445859185 0.0 3 0.920860403843391 4.357714875104169 89261.0 569.6403648947826 0.0 - - - - - - - 281.75 178 4 STAG3;STAG3L1 stromal antigen 3;stromal antigen 3-like 1 3419 431 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A904.[MT7]-DWEGLTSLLLEK[MT7].3b4_1.heavy 564.653 / 632.28 47531.0 43.27519989013672 43 13 10 10 10 1.714449064676034 46.123036445859185 0.0 3 0.920860403843391 4.357714875104169 47531.0 320.2702874356882 0.0 - - - - - - - 248.8181818181818 95 11 STAG3;STAG3L1 stromal antigen 3;stromal antigen 3-like 1 3421 431 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A904.[MT7]-DWEGLTSLLLEK[MT7].3b5_1.heavy 564.653 / 745.364 24168.0 43.27519989013672 43 13 10 10 10 1.714449064676034 46.123036445859185 0.0 3 0.920860403843391 4.357714875104169 24168.0 165.10967358266157 0.0 - - - - - - - 261.625 48 8 STAG3;STAG3L1 stromal antigen 3;stromal antigen 3-like 1 3423 431 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A904.[MT7]-DWEGLTSLLLEK[MT7].3y4_1.heavy 564.653 / 646.426 40603.0 43.27519989013672 43 13 10 10 10 1.714449064676034 46.123036445859185 0.0 3 0.920860403843391 4.357714875104169 40603.0 97.70749244683876 0.0 - - - - - - - 225.4 81 10 STAG3;STAG3L1 stromal antigen 3;stromal antigen 3-like 1 3425 432 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1177.[MT7]-EDGASGQER.2y8_1.heavy 546.756 / 819.359 27391.0 12.401800155639648 48 18 10 10 10 4.788179984813888 15.921287348936422 0.0 3 0.9857516096897558 10.326721132475848 27391.0 162.59497716894975 0.0 - - - - - - - 172.76666666666668 54 30 RCHY1 ring finger and CHY zinc finger domain containing 1 3427 432 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1177.[MT7]-EDGASGQER.2y5_1.heavy 546.756 / 576.274 8035.0 12.401800155639648 48 18 10 10 10 4.788179984813888 15.921287348936422 0.0 3 0.9857516096897558 10.326721132475848 8035.0 48.919330289193304 0.0 - - - - - - - 146.0 16 33 RCHY1 ring finger and CHY zinc finger domain containing 1 3429 432 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1177.[MT7]-EDGASGQER.2b4_1.heavy 546.756 / 517.237 7231.0 12.401800155639648 48 18 10 10 10 4.788179984813888 15.921287348936422 0.0 3 0.9857516096897558 10.326721132475848 7231.0 19.810958904109587 1.0 - - - - - - - 604.8571428571429 25 7 RCHY1 ring finger and CHY zinc finger domain containing 1 3431 432 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1177.[MT7]-EDGASGQER.2y7_1.heavy 546.756 / 704.332 27317.0 12.401800155639648 48 18 10 10 10 4.788179984813888 15.921287348936422 0.0 3 0.9857516096897558 10.326721132475848 27317.0 49.894063926940646 0.0 - - - - - - - 657.0 54 8 RCHY1 ring finger and CHY zinc finger domain containing 1 3433 433 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1178.[MT7]-TADDFLNR.2y5_1.heavy 548.281 / 664.341 49761.0 26.49180030822754 50 20 10 10 10 8.014902730186538 12.476757780649026 0.0 3 0.9963510895323834 20.424367639799947 49761.0 56.512978654573715 0.0 - - - - - - - 317.0 99 2 CCNH cyclin H 3435 433 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1178.[MT7]-TADDFLNR.2b4_1.heavy 548.281 / 547.248 72581.0 26.49180030822754 50 20 10 10 10 8.014902730186538 12.476757780649026 0.0 3 0.9963510895323834 20.424367639799947 72581.0 66.97142744479495 0.0 - - - - - - - 317.0 145 2 CCNH cyclin H 3437 433 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1178.[MT7]-TADDFLNR.2b5_1.heavy 548.281 / 694.316 30744.0 26.49180030822754 50 20 10 10 10 8.014902730186538 12.476757780649026 0.0 3 0.9963510895323834 20.424367639799947 30744.0 72.73817034700315 0.0 - - - - - - - 317.0 61 1 CCNH cyclin H 3439 433 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1178.[MT7]-TADDFLNR.2y7_1.heavy 548.281 / 850.405 48176.0 26.49180030822754 50 20 10 10 10 8.014902730186538 12.476757780649026 0.0 3 0.9963510895323834 20.424367639799947 48176.0 56.99053627760253 0.0 - - - - - - - 880.5555555555555 96 9 CCNH cyclin H 3441 434 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A834.[MT7]-DINELNLPK[MT7].2b4_1.heavy 672.392 / 616.306 61000.0 28.9906005859375 48 18 10 10 10 6.9012555852229385 14.490116872952996 0.0 3 0.988296526575446 11.396736534270216 61000.0 32.860976752905884 0.0 - - - - - - - 667.0 122 1 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 3443 434 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A834.[MT7]-DINELNLPK[MT7].2y3_1.heavy 672.392 / 501.352 34667.0 28.9906005859375 48 18 10 10 10 6.9012555852229385 14.490116872952996 0.0 3 0.988296526575446 11.396736534270216 34667.0 21.388753797716927 0.0 - - - - - - - 333.0 69 1 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 3445 434 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A834.[MT7]-DINELNLPK[MT7].2b6_1.heavy 672.392 / 843.433 54333.0 28.9906005859375 48 18 10 10 10 6.9012555852229385 14.490116872952996 0.0 3 0.988296526575446 11.396736534270216 54333.0 199.3560096510614 0.0 - - - - - - - 333.0 108 4 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 3447 434 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A834.[MT7]-DINELNLPK[MT7].2b5_1.heavy 672.392 / 729.39 38333.0 28.9906005859375 48 18 10 10 10 6.9012555852229385 14.490116872952996 0.0 3 0.988296526575446 11.396736534270216 38333.0 49.63943836520435 0.0 - - - - - - - 333.0 76 3 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 3449 435 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1285.[MT7]-VLELNASDER.2y8_1.heavy 645.344 / 933.427 18514.0 26.91080093383789 45 15 10 10 10 4.151223608381112 24.089282928075722 0.0 3 0.9587721181772809 6.057080756323387 18514.0 44.4511460432791 0.0 - - - - - - - 325.0 37 7 RFC4 replication factor C (activator 1) 4, 37kDa 3451 435 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1285.[MT7]-VLELNASDER.2b4_1.heavy 645.344 / 599.388 18514.0 26.91080093383789 45 15 10 10 10 4.151223608381112 24.089282928075722 0.0 3 0.9587721181772809 6.057080756323387 18514.0 17.815627405696688 0.0 - - - - - - - 325.0 37 4 RFC4 replication factor C (activator 1) 4, 37kDa 3453 435 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1285.[MT7]-VLELNASDER.2y9_1.heavy 645.344 / 1046.51 25011.0 26.91080093383789 45 15 10 10 10 4.151223608381112 24.089282928075722 0.0 3 0.9587721181772809 6.057080756323387 25011.0 63.7686588187538 0.0 - - - - - - - 325.0 50 4 RFC4 replication factor C (activator 1) 4, 37kDa 3455 435 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1285.[MT7]-VLELNASDER.2y7_1.heavy 645.344 / 804.385 19489.0 26.91080093383789 45 15 10 10 10 4.151223608381112 24.089282928075722 0.0 3 0.9587721181772809 6.057080756323387 19489.0 59.984623914073595 0.0 - - - - - - - 325.0 38 5 RFC4 replication factor C (activator 1) 4, 37kDa 3457 436 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1171.[MT7]-YQLEIK[MT7].2y4_1.heavy 541.328 / 646.426 36799.0 27.790300369262695 45 15 10 10 10 1.6545030144381376 40.99346657285327 0.0 3 0.9515870462810173 5.586164162070575 36799.0 71.56388442211056 0.0 - - - - - - - 332.0 73 4 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 3459 436 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1171.[MT7]-YQLEIK[MT7].2y5_1.heavy 541.328 / 774.484 37794.0 27.790300369262695 45 15 10 10 10 1.6545030144381376 40.99346657285327 0.0 3 0.9515870462810173 5.586164162070575 37794.0 74.25856281407036 0.0 - - - - - - - 332.0 75 5 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 3461 436 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1171.[MT7]-YQLEIK[MT7].2b4_1.heavy 541.328 / 678.358 30832.0 27.790300369262695 45 15 10 10 10 1.6545030144381376 40.99346657285327 0.0 3 0.9515870462810173 5.586164162070575 30832.0 112.17213760017445 0.0 - - - - - - - 870.5 61 8 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 3463 436 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1171.[MT7]-YQLEIK[MT7].2y3_1.heavy 541.328 / 533.341 31163.0 27.790300369262695 45 15 10 10 10 1.6545030144381376 40.99346657285327 0.0 3 0.9515870462810173 5.586164162070575 31163.0 40.01610084358444 0.0 - - - - - - - 332.0 62 3 UBE2K ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 3465 437 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A835.[MT7]-GLTPLELALQR.3y6_1.heavy 452.277 / 729.425 31541.0 37.8474006652832 50 20 10 10 10 96.64988510033164 1.034662378503509 0.0 3 0.9972897310120639 23.700528757807366 31541.0 123.22070365699875 0.0 - - - - - - - 348.42857142857144 63 7 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 3467 437 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A835.[MT7]-GLTPLELALQR.3b6_1.heavy 452.277 / 755.442 30729.0 37.8474006652832 50 20 10 10 10 96.64988510033164 1.034662378503509 0.0 3 0.9972897310120639 23.700528757807366 30729.0 233.8863832595796 0.0 - - - - - - - 244.125 61 8 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 3469 437 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A835.[MT7]-GLTPLELALQR.3y4_1.heavy 452.277 / 487.299 70562.0 37.8474006652832 50 20 10 10 10 96.64988510033164 1.034662378503509 0.0 3 0.9972897310120639 23.700528757807366 70562.0 442.95134561836414 0.0 - - - - - - - 228.0 141 5 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 3471 437 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A835.[MT7]-GLTPLELALQR.3y5_1.heavy 452.277 / 600.383 50727.0 37.8474006652832 50 20 10 10 10 96.64988510033164 1.034662378503509 0.0 3 0.9972897310120639 23.700528757807366 50727.0 194.5329275220681 0.0 - - - - - - - 298.3333333333333 101 6 CDKN2D cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 3473 438 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1170.[MT7]-LAADTLAVR.2y8_1.heavy 537.325 / 816.457 55047.0 27.298099517822266 44 14 10 10 10 2.097555057709552 37.70993454741306 0.0 3 0.9410791135615144 5.059084107377255 55047.0 63.13035800970874 0.0 - - - - - - - 824.0 110 8 E2F4 E2F transcription factor 4, p107/p130-binding 3475 438 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1170.[MT7]-LAADTLAVR.2y5_1.heavy 537.325 / 559.356 64606.0 27.298099517822266 44 14 10 10 10 2.097555057709552 37.70993454741306 0.0 3 0.9410791135615144 5.059084107377255 64606.0 98.98407115600895 0.0 - - - - - - - 890.0 129 10 E2F4 E2F transcription factor 4, p107/p130-binding 3477 438 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1170.[MT7]-LAADTLAVR.2b4_1.heavy 537.325 / 515.295 44499.0 27.298099517822266 44 14 10 10 10 2.097555057709552 37.70993454741306 0.0 3 0.9410791135615144 5.059084107377255 44499.0 61.6416885743175 0.0 - - - - - - - 800.4285714285714 88 7 E2F4 E2F transcription factor 4, p107/p130-binding 3479 438 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1170.[MT7]-LAADTLAVR.2y6_1.heavy 537.325 / 674.383 15492.0 27.298099517822266 44 14 10 10 10 2.097555057709552 37.70993454741306 0.0 3 0.9410791135615144 5.059084107377255 15492.0 21.627678300455237 0.0 - - - - - - - 330.0 30 4 E2F4 E2F transcription factor 4, p107/p130-binding 3481 439 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A732.[MT7]-YVEAQQK[MT7].2b3_1.heavy 577.326 / 536.284 27836.0 18.36680030822754 44 14 10 10 10 1.3097500594368385 44.40911078781508 0.0 3 0.9476855042194647 5.3720444543444215 27836.0 31.05390460792239 0.0 - - - - - - - 329.6 55 5 BRCA2 breast cancer 2, early onset 3483 439 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A732.[MT7]-YVEAQQK[MT7].2y4_1.heavy 577.326 / 618.369 40207.0 18.36680030822754 44 14 10 10 10 1.3097500594368385 44.40911078781508 0.0 3 0.9476855042194647 5.3720444543444215 40207.0 139.15454961808115 0.0 - - - - - - - 370.8 80 5 BRCA2 breast cancer 2, early onset 3485 439 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A732.[MT7]-YVEAQQK[MT7].2y5_1.heavy 577.326 / 747.412 28248.0 18.36680030822754 44 14 10 10 10 1.3097500594368385 44.40911078781508 0.0 3 0.9476855042194647 5.3720444543444215 28248.0 66.19974648285327 0.0 - - - - - - - 283.25 56 8 BRCA2 breast cancer 2, early onset 3487 439 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A732.[MT7]-YVEAQQK[MT7].2y6_1.heavy 577.326 / 846.48 38764.0 18.36680030822754 44 14 10 10 10 1.3097500594368385 44.40911078781508 0.0 3 0.9476855042194647 5.3720444543444215 38764.0 344.35980582524274 0.0 - - - - - - - 240.33333333333334 77 6 BRCA2 breast cancer 2, early onset 3489 440 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1282.[MT7]-RQGVPADQLR.3y6_1.heavy 428.582 / 699.378 206397.0 18.4606990814209 48 18 10 10 10 2.8415975600101055 27.996745387586106 0.0 3 0.9860958548958029 10.454077818300778 206397.0 318.1579913059913 0.0 - - - - - - - 412.0 412 4 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3491 440 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1282.[MT7]-RQGVPADQLR.3b4_1.heavy 428.582 / 585.359 150932.0 18.4606990814209 48 18 10 10 10 2.8415975600101055 27.996745387586106 0.0 3 0.9860958548958029 10.454077818300778 150932.0 278.16951003098904 0.0 - - - - - - - 288.4 301 5 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3493 440 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1282.[MT7]-RQGVPADQLR.3y4_1.heavy 428.582 / 531.289 99384.0 18.4606990814209 48 18 10 10 10 2.8415975600101055 27.996745387586106 0.0 3 0.9860958548958029 10.454077818300778 99384.0 127.84505467335921 0.0 - - - - - - - 257.5 198 4 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3495 440 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1282.[MT7]-RQGVPADQLR.3y5_1.heavy 428.582 / 602.326 136292.0 18.4606990814209 48 18 10 10 10 2.8415975600101055 27.996745387586106 0.0 3 0.9860958548958029 10.454077818300778 136292.0 325.95678470634175 0.0 - - - - - - - 274.6666666666667 272 3 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3497 441 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1477.[MT7]-VDQFDPFTVPTISFIC[CAM]R.3y7_1.heavy 729.374 / 896.466 9327.0 44.3661003112793 50 20 10 10 10 9.858813458732683 10.143208451867256 0.0 3 0.993343693249496 15.118354045416902 9327.0 37.41112057907275 0.0 - - - - - - - 280.5 18 12 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3499 441 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1477.[MT7]-VDQFDPFTVPTISFIC[CAM]R.3b4_1.heavy 729.374 / 634.332 12232.0 44.3661003112793 50 20 10 10 10 9.858813458732683 10.143208451867256 0.0 3 0.993343693249496 15.118354045416902 12232.0 36.789025309869494 0.0 - - - - - - - 306.0 24 10 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3501 441 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1477.[MT7]-VDQFDPFTVPTISFIC[CAM]R.3b5_1.heavy 729.374 / 749.359 92353.0 44.3661003112793 50 20 10 10 10 9.858813458732683 10.143208451867256 0.0 3 0.993343693249496 15.118354045416902 92353.0 90.19293647573582 0.0 - - - - - - - 344.25 184 4 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3503 441 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1477.[MT7]-VDQFDPFTVPTISFIC[CAM]R.3y5_1.heavy 729.374 / 682.334 25229.0 44.3661003112793 50 20 10 10 10 9.858813458732683 10.143208451867256 0.0 3 0.993343693249496 15.118354045416902 25229.0 72.33823590495388 0.0 - - - - - - - 306.0 50 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3505 442 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A838.[MT7]-RDWTAELGIR.3b6_1.heavy 454.253 / 903.444 6243.0 31.037900924682617 46 16 10 10 10 3.618714918107954 22.485963761925994 0.0 3 0.9646474846399786 6.5443178673039935 6243.0 19.989605769230767 0.0 - - - - - - - 312.0 12 1 UBE2S ubiquitin-conjugating enzyme E2S 3507 442 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A838.[MT7]-RDWTAELGIR.3y6_1.heavy 454.253 / 658.388 65865.0 31.037900924682617 46 16 10 10 10 3.618714918107954 22.485963761925994 0.0 3 0.9646474846399786 6.5443178673039935 65865.0 223.23695338252054 0.0 - - - - - - - 312.0 131 6 UBE2S ubiquitin-conjugating enzyme E2S 3509 442 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A838.[MT7]-RDWTAELGIR.3y4_1.heavy 454.253 / 458.309 114249.0 31.037900924682617 46 16 10 10 10 3.618714918107954 22.485963761925994 0.0 3 0.9646474846399786 6.5443178673039935 114249.0 221.52293095945905 0.0 - - - - - - - 312.0 228 3 UBE2S ubiquitin-conjugating enzyme E2S 3511 442 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A838.[MT7]-RDWTAELGIR.3y5_1.heavy 454.253 / 587.351 85843.0 31.037900924682617 46 16 10 10 10 3.618714918107954 22.485963761925994 0.0 3 0.9646474846399786 6.5443178673039935 85843.0 95.324901966753 0.0 - - - - - - - 312.0 171 5 UBE2S ubiquitin-conjugating enzyme E2S 3513 443 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1281.[MT7]-RQGVPADQLR.2y9_1.heavy 642.369 / 983.527 8660.0 18.4606990814209 40 14 6 10 10 1.6372840594457803 48.678912807149175 0.0 3 0.9310097245369843 4.6713175812798235 8660.0 56.416116504854365 0.0 - - - - - - - 274.6666666666667 17 6 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3515 443 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1281.[MT7]-RQGVPADQLR.2b4_1.heavy 642.369 / 585.359 4536.0 18.4606990814209 40 14 6 10 10 1.6372840594457803 48.678912807149175 0.0 3 0.9310097245369843 4.6713175812798235 4536.0 1.3827188777887227 6.0 - - - - - - - 257.5 67 4 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3517 443 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1281.[MT7]-RQGVPADQLR.2y6_1.heavy 642.369 / 699.378 4742.0 18.4606990814209 40 14 6 10 10 1.6372840594457803 48.678912807149175 0.0 3 0.9310097245369843 4.6713175812798235 4742.0 10.46511662899385 0.0 - - - - - - - 320.44444444444446 9 9 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3519 443 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1281.[MT7]-RQGVPADQLR.2b7_1.heavy 642.369 / 868.476 23506.0 18.4606990814209 40 14 6 10 10 1.6372840594457803 48.678912807149175 0.0 3 0.9310097245369843 4.6713175812798235 23506.0 16.053236117156892 0.0 - - - - - - - 343.3333333333333 47 3 PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 3521 444 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1175.[MT7]-DVLLPLK[MT7].2y4_1.heavy 543.362 / 614.436 71074.0 33.26940155029297 48 18 10 10 10 2.391840981001798 31.69046646158932 0.0 3 0.9865126820525589 10.614761441254862 71074.0 135.14070422535212 0.0 - - - - - - - 331.6666666666667 142 6 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 3523 444 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1175.[MT7]-DVLLPLK[MT7].2y5_1.heavy 543.362 / 727.52 23857.0 33.26940155029297 48 18 10 10 10 2.391840981001798 31.69046646158932 0.0 3 0.9865126820525589 10.614761441254862 23857.0 69.60291750503018 1.0 - - - - - - - 397.8 114 5 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 3525 444 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1175.[MT7]-DVLLPLK[MT7].2b4_1.heavy 543.362 / 585.373 84245.0 33.26940155029297 48 18 10 10 10 2.391840981001798 31.69046646158932 0.0 3 0.9865126820525589 10.614761441254862 84245.0 108.05875502815766 0.0 - - - - - - - 249.0 168 3 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 3527 444 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1175.[MT7]-DVLLPLK[MT7].2y3_1.heavy 543.362 / 501.352 290013.0 33.26940155029297 48 18 10 10 10 2.391840981001798 31.69046646158932 0.0 3 0.9865126820525589 10.614761441254862 290013.0 431.0929723153937 0.0 - - - - - - - 331.6666666666667 580 3 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) 3529 445 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1476.[MT7]-WNLAAVTPHDFIEHILR.4y8_1.heavy 544.8 / 1042.57 7441.0 41.9166259765625 35 12 10 3 10 1.0588980272404056 54.89971700232881 0.07089996337890625 3 0.8893116809793288 3.6746980965996197 7441.0 42.263081570996974 0.0 - - - - - - - 248.0 14 6 CCND2 cyclin D2 3531 445 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1476.[MT7]-WNLAAVTPHDFIEHILR.4b4_1.heavy 544.8 / 629.353 8764.0 41.9166259765625 35 12 10 3 10 1.0588980272404056 54.89971700232881 0.07089996337890625 3 0.8893116809793288 3.6746980965996197 8764.0 53.062036363636366 0.0 - - - - - - - 247.9 17 10 CCND2 cyclin D2 3533 445 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1476.[MT7]-WNLAAVTPHDFIEHILR.4b5_1.heavy 544.8 / 700.39 19513.0 41.9166259765625 35 12 10 3 10 1.0588980272404056 54.89971700232881 0.07089996337890625 3 0.8893116809793288 3.6746980965996197 19513.0 33.177671120764785 0.0 - - - - - - - 275.3333333333333 39 6 CCND2 cyclin D2 3535 445 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1476.[MT7]-WNLAAVTPHDFIEHILR.4b3_1.heavy 544.8 / 558.316 16867.0 41.9166259765625 35 12 10 3 10 1.0588980272404056 54.89971700232881 0.07089996337890625 3 0.8893116809793288 3.6746980965996197 16867.0 38.751269649334944 0.0 - - - - - - - 397.0 33 5 CCND2 cyclin D2 3537 446 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1174.[MT7]-DFC[CAM]DLK[MT7].2b3_1.heavy 543.281 / 567.235 16732.0 25.642499923706055 50 20 10 10 10 10.120485671192649 9.880948726071907 0.0 3 0.9934035649517717 15.18688492929652 16732.0 24.782962343096237 0.0 - - - - - - - 299.0 33 2 UBE2U ubiquitin-conjugating enzyme E2U (putative) 3539 446 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1174.[MT7]-DFC[CAM]DLK[MT7].2y4_1.heavy 543.281 / 679.357 37946.0 25.642499923706055 50 20 10 10 10 10.120485671192649 9.880948726071907 0.0 3 0.9934035649517717 15.18688492929652 37946.0 177.03903010033446 0.0 - - - - - - - 299.0 75 5 UBE2U ubiquitin-conjugating enzyme E2U (putative) 3541 446 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1174.[MT7]-DFC[CAM]DLK[MT7].2y5_1.heavy 543.281 / 826.425 49598.0 25.642499923706055 50 20 10 10 10 10.120485671192649 9.880948726071907 0.0 3 0.9934035649517717 15.18688492929652 49598.0 198.25388267726453 0.0 - - - - - - - 299.0 99 1 UBE2U ubiquitin-conjugating enzyme E2U (putative) 3543 446 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1174.[MT7]-DFC[CAM]DLK[MT7].2b4_1.heavy 543.281 / 682.262 145508.0 25.642499923706055 50 20 10 10 10 10.120485671192649 9.880948726071907 0.0 3 0.9934035649517717 15.18688492929652 145508.0 269.3206360670538 0.0 - - - - - - - 709.75 291 8 UBE2U ubiquitin-conjugating enzyme E2U (putative) 3545 447 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10057.[MT7]-SQLQITVISAK[MT7].3b4_1.heavy 492.639 / 601.343 34333.0 29.815099716186523 47 17 10 10 10 4.498441472024467 22.22992132317246 0.0 3 0.971737102745523 7.323620300767405 34333.0 60.89480763261747 0.0 - - - - - - - 333.0 68 6 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 3547 447 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10057.[MT7]-SQLQITVISAK[MT7].3b5_1.heavy 492.639 / 714.427 7333.0 29.815099716186523 47 17 10 10 10 4.498441472024467 22.22992132317246 0.0 3 0.971737102745523 7.323620300767405 7333.0 20.523760719798158 1.0 - - - - - - - 333.0 16 4 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 3549 447 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10057.[MT7]-SQLQITVISAK[MT7].3y4_1.heavy 492.639 / 562.368 33667.0 29.815099716186523 47 17 10 10 10 4.498441472024467 22.22992132317246 0.0 3 0.971737102745523 7.323620300767405 33667.0 46.802939009752436 0.0 - - - - - - - 333.0 67 3 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 3551 447 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A10057.[MT7]-SQLQITVISAK[MT7].3y5_1.heavy 492.639 / 661.437 10667.0 29.815099716186523 47 17 10 10 10 4.498441472024467 22.22992132317246 0.0 3 0.971737102745523 7.323620300767405 10667.0 17.73586805701425 0.0 - - - - - - - 333.0 21 4 ITCH itchy E3 ubiquitin protein ligase homolog (mouse) 3553 448 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1474.[MT7]-TC[CAM]DISFSDPDDLLNFK[MT7].2b3_1.heavy 1088.03 / 521.215 8159.0 38.775649070739746 37 11 10 6 10 1.9546727880252033 51.159457793971505 0.032199859619140625 3 0.8748824022447791 3.4519731667607734 8159.0 30.596249999999998 0.0 - - - - - - - 280.0 16 16 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 3555 448 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1474.[MT7]-TC[CAM]DISFSDPDDLLNFK[MT7].2y8_1.heavy 1088.03 / 1105.6 5759.0 38.775649070739746 37 11 10 6 10 1.9546727880252033 51.159457793971505 0.032199859619140625 3 0.8748824022447791 3.4519731667607734 5759.0 7.898541666666667 1.0 - - - - - - - 269.4736842105263 11 19 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 3557 448 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1474.[MT7]-TC[CAM]DISFSDPDDLLNFK[MT7].2b4_1.heavy 1088.03 / 634.299 6719.0 38.775649070739746 37 11 10 6 10 1.9546727880252033 51.159457793971505 0.032199859619140625 3 0.8748824022447791 3.4519731667607734 6719.0 18.8971875 0.0 - - - - - - - 253.33333333333334 13 12 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 3559 448 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1474.[MT7]-TC[CAM]DISFSDPDDLLNFK[MT7].2y3_1.heavy 1088.03 / 552.326 4160.0 38.775649070739746 37 11 10 6 10 1.9546727880252033 51.159457793971505 0.032199859619140625 3 0.8748824022447791 3.4519731667607734 4160.0 12.219999999999999 0.0 - - - - - - - 297.14285714285717 8 14 UBE2M ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast) 3561 449 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1172.[MT7]-GAYGSVNK[MT7].2y4_1.heavy 542.305 / 591.358 6147.0 17.836200714111328 41 13 10 10 8 0.9956783718281151 57.7454268442053 0.0 4 0.9161620864732494 4.232141689999785 6147.0 23.98829268292683 0.0 - - - - - - - 358.75 12 4 MAP2K4 mitogen-activated protein kinase kinase 4 3563 449 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1172.[MT7]-GAYGSVNK[MT7].2y5_1.heavy 542.305 / 648.38 22745.0 17.836200714111328 41 13 10 10 8 0.9956783718281151 57.7454268442053 0.0 4 0.9161620864732494 4.232141689999785 22745.0 45.85983739837398 0.0 - - - - - - - 333.125 45 8 MAP2K4 mitogen-activated protein kinase kinase 4 3565 449 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1172.[MT7]-GAYGSVNK[MT7].2y3_1.heavy 542.305 / 504.326 8606.0 17.836200714111328 41 13 10 10 8 0.9956783718281151 57.7454268442053 0.0 4 0.9161620864732494 4.232141689999785 8606.0 11.672107875021533 1.0 - - - - - - - 691.875 22 8 MAP2K4 mitogen-activated protein kinase kinase 4 3567 449 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1172.[MT7]-GAYGSVNK[MT7].2y6_1.heavy 542.305 / 811.443 14959.0 17.836200714111328 41 13 10 10 8 0.9956783718281151 57.7454268442053 0.0 4 0.9161620864732494 4.232141689999785 14959.0 90.97017886178861 0.0 - - - - - - - 307.5 29 8 MAP2K4 mitogen-activated protein kinase kinase 4 3569 450 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A730.[MT7]-YRPC[CAM]SLGR.3y6_1.heavy 384.874 / 689.34 11214.0 19.627599716186523 35 17 0 10 8 3.3385890978725463 29.95277258400057 0.0 4 0.9797529819157901 8.658573244772983 11214.0 76.62207136237257 0.0 - - - - - - - 267.14285714285717 22 7 RFC3 replication factor C (activator 1) 3, 38kDa 3571 450 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A730.[MT7]-YRPC[CAM]SLGR.3b3_1.heavy 384.874 / 561.326 5399.0 19.627599716186523 35 17 0 10 8 3.3385890978725463 29.95277258400057 0.0 4 0.9797529819157901 8.658573244772983 5399.0 11.717611816773212 0.0 - - - - - - - 277.0 10 3 RFC3 replication factor C (activator 1) 3, 38kDa 3573 450 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A730.[MT7]-YRPC[CAM]SLGR.3y4_1.heavy 384.874 / 432.257 19105.0 19.627599716186523 35 17 0 10 8 3.3385890978725463 29.95277258400057 0.0 4 0.9797529819157901 8.658573244772983 19105.0 10.322007611223947 2.0 - - - - - - - 1199.7777777777778 213 9 RFC3 replication factor C (activator 1) 3, 38kDa 3575 450 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A730.[MT7]-YRPC[CAM]SLGR.3y5_1.heavy 384.874 / 592.287 6853.0 19.627599716186523 35 17 0 10 8 3.3385890978725463 29.95277258400057 0.0 4 0.9797529819157901 8.658573244772983 6853.0 31.044915662650602 0.0 - - - - - - - 290.8 13 5 RFC3 replication factor C (activator 1) 3, 38kDa 3577 451 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1076.[MT7]-ETGSSK[MT7].2y4_1.heavy 448.75 / 522.3 8167.0 12.097749948501587 43 18 10 7 8 4.851846284381534 20.61071067356517 0.02920055389404297 4 0.9816829124436818 9.104770518973554 8167.0 2.0702154626108995 1.0 - - - - - - - 594.6666666666666 16 9 NCL;CCNE1 nucleolin;cyclin E1 3579 451 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1076.[MT7]-ETGSSK[MT7].2y5_1.heavy 448.75 / 623.348 26415.0 12.097749948501587 43 18 10 7 8 4.851846284381534 20.61071067356517 0.02920055389404297 4 0.9816829124436818 9.104770518973554 26415.0 54.17721311475411 0.0 - - - - - - - 126.61111111111111 52 36 NCL;CCNE1 nucleolin;cyclin E1 3581 451 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1076.[MT7]-ETGSSK[MT7].2b4_1.heavy 448.75 / 519.253 1126.0 12.097749948501587 43 18 10 7 8 4.851846284381534 20.61071067356517 0.02920055389404297 4 0.9816829124436818 9.104770518973554 1126.0 -1.0571069466427792 20.0 - - - - - - - 211.25 15 24 NCL;CCNE1 nucleolin;cyclin E1 3583 451 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1076.[MT7]-ETGSSK[MT7].2y3_1.heavy 448.75 / 465.279 2985.0 12.097749948501587 43 18 10 7 8 4.851846284381534 20.61071067356517 0.02920055389404297 4 0.9816829124436818 9.104770518973554 2985.0 14.1301775147929 1.0 - - - - - - - 198.30434782608697 46 23 NCL;CCNE1 nucleolin;cyclin E1 3585 452 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1075.[MT7]-VFSEDR.2y4_1.heavy 448.733 / 506.22 4451.0 21.571874618530273 22 10 0 6 6 1.5194772214325047 49.63692714013202 0.03549957275390625 6 0.8461130159121885 3.104759214952619 4451.0 6.441447191011235 2.0 - - - - - - - 342.53846153846155 13 13 AKT3;AKT1 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1 3587 452 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1075.[MT7]-VFSEDR.2y5_1.heavy 448.733 / 653.289 41392.0 21.571874618530273 22 10 0 6 6 1.5194772214325047 49.63692714013202 0.03549957275390625 6 0.8461130159121885 3.104759214952619 41392.0 47.2514894097242 1.0 - - - - - - - 334.0 356 6 AKT3;AKT1 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1 3589 452 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1075.[MT7]-VFSEDR.2b5_1.heavy 448.733 / 722.348 6231.0 21.571874618530273 22 10 0 6 6 1.5194772214325047 49.63692714013202 0.03549957275390625 6 0.8461130159121885 3.104759214952619 6231.0 1.1529738302934178 2.0 - - - - - - - 243.1818181818182 17 11 AKT3;AKT1 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1 3591 452 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1075.[MT7]-VFSEDR.2y1_1.heavy 448.733 / 175.119 23589.0 21.571874618530273 22 10 0 6 6 1.5194772214325047 49.63692714013202 0.03549957275390625 6 0.8461130159121885 3.104759214952619 23589.0 8.914875293496813 1.0 - - - - - - - 223.0 47 1 AKT3;AKT1 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma);v-akt murine thymoma viral oncogene homolog 1 3593 453 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1074.[MT7]-LIFSK[MT7].2y4_1.heavy 448.296 / 638.399 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN1A;HSPA14;CCNG2 cyclin-dependent kinase inhibitor 1A (p21, Cip1);heat shock 70kDa protein 14;cyclin G2 3595 453 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1074.[MT7]-LIFSK[MT7].2y3_1.heavy 448.296 / 525.315 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN1A;HSPA14;CCNG2 cyclin-dependent kinase inhibitor 1A (p21, Cip1);heat shock 70kDa protein 14;cyclin G2 3597 453 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1074.[MT7]-LIFSK[MT7].2y2_1.heavy 448.296 / 378.247 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN1A;HSPA14;CCNG2 cyclin-dependent kinase inhibitor 1A (p21, Cip1);heat shock 70kDa protein 14;cyclin G2 3599 453 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1074.[MT7]-LIFSK[MT7].2y1_1.heavy 448.296 / 291.215 N/A N/A - - - - - - - - - 0.0 - - - - - - - CDKN1A;HSPA14;CCNG2 cyclin-dependent kinase inhibitor 1A (p21, Cip1);heat shock 70kDa protein 14;cyclin G2 3601 454 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1073.[MT7]-LFSLK[MT7].2y4_1.heavy 448.296 / 638.399 N/A 32.50980122884115 35 14 6 5 10 1.9824900762239566 39.72614193983905 0.048000335693359375 3 0.9370167334034737 4.891516823989512 143769.0 14.048698846145527 1.0 - - - - - - - 12749.0 438 1 NCAPD3;OR51V1;DKFZP781G0119;VNN1;UBE2M;KIAA0391;CEP350 non-SMC condensin II complex, subunit D3;olfactory receptor, family 51, subfamily V, member 1;hypothetical protein LOC644041;vanin 1;ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast);KIAA0391;centrosomal protein 350kDa 3603 454 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1073.[MT7]-LFSLK[MT7].2y3_1.heavy 448.296 / 491.331 65374.0 32.50980122884115 35 14 6 5 10 1.9824900762239566 39.72614193983905 0.048000335693359375 3 0.9370167334034737 4.891516823989512 65374.0 106.05334763400079 0.0 - - - - - - - 271.0 130 5 NCAPD3;OR51V1;DKFZP781G0119;VNN1;UBE2M;KIAA0391;CEP350 non-SMC condensin II complex, subunit D3;olfactory receptor, family 51, subfamily V, member 1;hypothetical protein LOC644041;vanin 1;ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast);KIAA0391;centrosomal protein 350kDa 3605 454 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1073.[MT7]-LFSLK[MT7].2y2_1.heavy 448.296 / 404.299 25499.0 32.50980122884115 35 14 6 5 10 1.9824900762239566 39.72614193983905 0.048000335693359375 3 0.9370167334034737 4.891516823989512 25499.0 35.72868731563422 0.0 - - - - - - - 659.1428571428571 50 7 NCAPD3;OR51V1;DKFZP781G0119;VNN1;UBE2M;KIAA0391;CEP350 non-SMC condensin II complex, subunit D3;olfactory receptor, family 51, subfamily V, member 1;hypothetical protein LOC644041;vanin 1;ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast);KIAA0391;centrosomal protein 350kDa 3607 454 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1073.[MT7]-LFSLK[MT7].2y1_1.heavy 448.296 / 291.215 39062.0 32.50980122884115 35 14 6 5 10 1.9824900762239566 39.72614193983905 0.048000335693359375 3 0.9370167334034737 4.891516823989512 39062.0 22.26843873685641 1.0 - - - - - - - 651.4 78 5 NCAPD3;OR51V1;DKFZP781G0119;VNN1;UBE2M;KIAA0391;CEP350 non-SMC condensin II complex, subunit D3;olfactory receptor, family 51, subfamily V, member 1;hypothetical protein LOC644041;vanin 1;ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast);KIAA0391;centrosomal protein 350kDa 3609 455 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1072.[MT7]-AYLIK[MT7].2b3_1.heavy 448.296 / 492.294 29482.0 26.171300888061523 48 20 8 10 10 5.500096163193482 18.18150029252174 0.0 3 0.9933455316343669 15.120444545905809 29482.0 31.998150935702718 0.0 - - - - - - - 314.0 58 3 ORC6 origin recognition complex, subunit 6 3611 455 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1072.[MT7]-AYLIK[MT7].2y4_1.heavy 448.296 / 680.446 41714.0 26.171300888061523 48 20 8 10 10 5.500096163193482 18.18150029252174 0.0 3 0.9933455316343669 15.120444545905809 41714.0 41.89584115899282 0.0 - - - - - - - 314.0 83 3 ORC6 origin recognition complex, subunit 6 3613 455 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1072.[MT7]-AYLIK[MT7].2y3_1.heavy 448.296 / 517.383 29795.0 26.171300888061523 48 20 8 10 10 5.500096163193482 18.18150029252174 0.0 3 0.9933455316343669 15.120444545905809 29795.0 32.454702444208294 0.0 - - - - - - - 761.5714285714286 59 7 ORC6 origin recognition complex, subunit 6 3615 455 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1072.[MT7]-AYLIK[MT7].2y1_1.heavy 448.296 / 291.215 N/A 26.171300888061523 48 20 8 10 10 5.500096163193482 18.18150029252174 0.0 3 0.9933455316343669 15.120444545905809 47673.0 5.696615786911964 3.0 - - - - - - - 1725.0 135 2 ORC6 origin recognition complex, subunit 6 3617 456 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1071.[MT7]-LEDTK[MT7].2b3_1.heavy 447.263 / 502.263 82336.0 17.848575592041016 39 17 9 5 8 2.9414262190653915 27.99887138057177 0.04949951171875 4 0.9701360037468889 7.123634487143385 82336.0 112.35740936557643 0.0 - - - - - - - 359.5 164 4 LOC100505679;CCT5;UBE2Q2 hypothetical protein LOC100505679;chaperonin containing TCP1, subunit 5 (epsilon);ubiquitin-conjugating enzyme E2Q family member 2 3619 456 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1071.[MT7]-LEDTK[MT7].2y4_1.heavy 447.263 / 636.332 55849.0 17.848575592041016 39 17 9 5 8 2.9414262190653915 27.99887138057177 0.04949951171875 4 0.9701360037468889 7.123634487143385 55849.0 56.57623703867675 1.0 - - - - - - - 411.0 185 4 LOC100505679;CCT5;UBE2Q2 hypothetical protein LOC100505679;chaperonin containing TCP1, subunit 5 (epsilon);ubiquitin-conjugating enzyme E2Q family member 2 3621 456 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1071.[MT7]-LEDTK[MT7].2b4_1.heavy 447.263 / 603.311 6776.0 17.848575592041016 39 17 9 5 8 2.9414262190653915 27.99887138057177 0.04949951171875 4 0.9701360037468889 7.123634487143385 6776.0 4.167690128375387 2.0 - - - - - - - 342.3333333333333 13 3 LOC100505679;CCT5;UBE2Q2 hypothetical protein LOC100505679;chaperonin containing TCP1, subunit 5 (epsilon);ubiquitin-conjugating enzyme E2Q family member 2 3623 456 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1071.[MT7]-LEDTK[MT7].2y3_1.heavy 447.263 / 507.289 29772.0 17.848575592041016 39 17 9 5 8 2.9414262190653915 27.99887138057177 0.04949951171875 4 0.9701360037468889 7.123634487143385 29772.0 63.06879243702129 0.0 - - - - - - - 293.2857142857143 59 7 LOC100505679;CCT5;UBE2Q2 hypothetical protein LOC100505679;chaperonin containing TCP1, subunit 5 (epsilon);ubiquitin-conjugating enzyme E2Q family member 2 3625 457 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A736.[MT7]-EFSFTLK[MT7].2y4_1.heavy 580.334 / 652.415 34485.0 33.73569869995117 48 20 10 10 8 9.174480984989312 10.899799145435418 0.0 4 0.9962737345258322 20.211126635742016 34485.0 86.3875079091187 0.0 - - - - - - - 298.8181818181818 68 11 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3627 457 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A736.[MT7]-EFSFTLK[MT7].2y5_1.heavy 580.334 / 739.447 54190.0 33.73569869995117 48 20 10 10 8 9.174480984989312 10.899799145435418 0.0 4 0.9962737345258322 20.211126635742016 54190.0 64.68127370817336 0.0 - - - - - - - 313.0 108 6 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3629 457 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A736.[MT7]-EFSFTLK[MT7].2y3_1.heavy 580.334 / 505.347 51375.0 33.73569869995117 48 20 10 10 8 9.174480984989312 10.899799145435418 0.0 4 0.9962737345258322 20.211126635742016 51375.0 73.35192987459311 1.0 - - - - - - - 1303.5555555555557 142 9 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3631 457 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A736.[MT7]-EFSFTLK[MT7].2y6_1.heavy 580.334 / 886.516 81637.0 33.73569869995117 48 20 10 10 8 9.174480984989312 10.899799145435418 0.0 4 0.9962737345258322 20.211126635742016 81637.0 185.13751152873508 0.0 - - - - - - - 375.4 163 5 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3633 458 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A737.[MT7]-LGAGGGSPEK[MT7].2y4_1.heavy 580.829 / 604.342 4739.0 18.2721004486084 43 13 10 10 10 1.8294889854528942 42.98086678899553 0.0 3 0.9170767480535538 4.2557530428432315 4739.0 10.735598705501618 0.0 - - - - - - - 360.5 9 4 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3635 458 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A737.[MT7]-LGAGGGSPEK[MT7].2y9_1.heavy 580.829 / 903.465 35027.0 18.2721004486084 43 13 10 10 10 1.8294889854528942 42.98086678899553 0.0 3 0.9170767480535538 4.2557530428432315 35027.0 191.2882281553398 0.0 - - - - - - - 257.5 70 8 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3637 458 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A737.[MT7]-LGAGGGSPEK[MT7].2y3_1.heavy 580.829 / 517.31 22458.0 18.2721004486084 43 13 10 10 10 1.8294889854528942 42.98086678899553 0.0 3 0.9170767480535538 4.2557530428432315 22458.0 34.94851040221914 0.0 - - - - - - - 1206.5714285714287 44 7 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3639 458 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A737.[MT7]-LGAGGGSPEK[MT7].2y7_1.heavy 580.829 / 775.407 16895.0 18.2721004486084 43 13 10 10 10 1.8294889854528942 42.98086678899553 0.0 3 0.9170767480535538 4.2557530428432315 16895.0 23.9209142394822 0.0 - - - - - - - 360.5 33 4 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3641 459 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1070.[MT7]-DFVIVR.2b3_1.heavy 446.772 / 506.273 56667.0 29.142799377441406 48 18 10 10 10 6.6634760497977235 15.007182325362391 0.0 3 0.985297811666107 10.165713104178726 56667.0 109.89277535982009 0.0 - - - - - - - 333.0 113 3 SKP2 S-phase kinase-associated protein 2 (p45) 3643 459 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1070.[MT7]-DFVIVR.2y5_1.heavy 446.772 / 633.408 74667.0 29.142799377441406 48 18 10 10 10 6.6634760497977235 15.007182325362391 0.0 3 0.985297811666107 10.165713104178726 74667.0 104.9649035105015 0.0 - - - - - - - 333.0 149 2 SKP2 S-phase kinase-associated protein 2 (p45) 3645 459 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1070.[MT7]-DFVIVR.2b4_1.heavy 446.772 / 619.357 37667.0 29.142799377441406 48 18 10 10 10 6.6634760497977235 15.007182325362391 0.0 3 0.985297811666107 10.165713104178726 37667.0 112.92577911411412 1.0 - - - - - - - 333.0 80 5 SKP2 S-phase kinase-associated protein 2 (p45) 3647 459 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1070.[MT7]-DFVIVR.2y1_1.heavy 446.772 / 175.119 65333.0 29.142799377441406 48 18 10 10 10 6.6634760497977235 15.007182325362391 0.0 3 0.985297811666107 10.165713104178726 65333.0 83.14947122988819 0.0 - - - - - - - 333.0 130 1 SKP2 S-phase kinase-associated protein 2 (p45) 3649 460 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A833.[MT7]-AQELLNEAVGR.2y8_1.heavy 672.374 / 871.5 63575.0 30.481599807739258 50 20 10 10 10 10.55965451101689 9.470006797634333 0.0 3 0.9922806934463928 14.037619243010777 63575.0 46.89231692432834 0.0 - - - - - - - 318.0 127 4 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3651 460 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A833.[MT7]-AQELLNEAVGR.2b4_1.heavy 672.374 / 586.332 67071.0 30.481599807739258 50 20 10 10 10 10.55965451101689 9.470006797634333 0.0 3 0.9922806934463928 14.037619243010777 67071.0 54.58102040907219 0.0 - - - - - - - 777.3333333333334 134 9 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3653 460 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A833.[MT7]-AQELLNEAVGR.2y10_1.heavy 672.374 / 1128.6 79786.0 30.481599807739258 50 20 10 10 10 10.55965451101689 9.470006797634333 0.0 3 0.9922806934463928 14.037619243010777 79786.0 318.64220125786164 0.0 - - - - - - - 318.0 159 4 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3655 460 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A833.[MT7]-AQELLNEAVGR.2y7_1.heavy 672.374 / 758.416 73111.0 30.481599807739258 50 20 10 10 10 10.55965451101689 9.470006797634333 0.0 3 0.9922806934463928 14.037619243010777 73111.0 178.56250524109015 0.0 - - - - - - - 318.0 146 2 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3657 461 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A937.[MT7]-IAEGVNSLLQMAGLLAR.3y7_1.heavy 634.032 / 731.423 31743.0 50.20439910888672 43 13 10 10 10 2.823478046305818 29.033728381193196 0.0 3 0.9216740129488715 4.380595087797388 31743.0 159.31673587290126 0.0 - - - - - - - 677.5 63 8 RFC2 replication factor C (activator 1) 2, 40kDa 3659 461 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A937.[MT7]-IAEGVNSLLQMAGLLAR.3b4_1.heavy 634.032 / 515.295 13500.0 50.20439910888672 43 13 10 10 10 2.823478046305818 29.033728381193196 0.0 3 0.9216740129488715 4.380595087797388 13500.0 75.04666093057118 0.0 - - - - - - - 202.8421052631579 27 19 RFC2 replication factor C (activator 1) 2, 40kDa 3661 461 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A937.[MT7]-IAEGVNSLLQMAGLLAR.3b5_1.heavy 634.032 / 614.363 20119.0 50.20439910888672 43 13 10 10 10 2.823478046305818 29.033728381193196 0.0 3 0.9216740129488715 4.380595087797388 20119.0 213.6831901401955 0.0 - - - - - - - 171.52941176470588 40 17 RFC2 replication factor C (activator 1) 2, 40kDa 3663 461 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A937.[MT7]-IAEGVNSLLQMAGLLAR.3y8_1.heavy 634.032 / 859.482 34609.0 50.20439910888672 43 13 10 10 10 2.823478046305818 29.033728381193196 0.0 3 0.9216740129488715 4.380595087797388 34609.0 270.7646660625587 0.0 - - - - - - - 184.9 69 20 RFC2 replication factor C (activator 1) 2, 40kDa 3665 462 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A939.[MT7]-YLIGAAPIAYGLPVSLR.2b3_1.heavy 959.568 / 534.341 18036.0 41.9610013961792 36 10 10 6 10 2.0497429920919337 48.78660416735547 0.035198211669921875 3 0.8479722178635175 3.124199116301244 18036.0 124.2 0.0 - - - - - - - 644.1428571428571 36 7 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3667 462 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A939.[MT7]-YLIGAAPIAYGLPVSLR.2b5_1.heavy 959.568 / 662.399 20374.0 41.9610013961792 36 10 10 6 10 2.0497429920919337 48.78660416735547 0.035198211669921875 3 0.8479722178635175 3.124199116301244 20374.0 120.68615384615386 0.0 - - - - - - - 250.5 40 6 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3669 462 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A939.[MT7]-YLIGAAPIAYGLPVSLR.2b1_1.heavy 959.568 / 308.173 8350.0 41.9610013961792 36 10 10 6 10 2.0497429920919337 48.78660416735547 0.035198211669921875 3 0.8479722178635175 3.124199116301244 8350.0 8.75 1.0 - - - - - - - 222.66666666666666 18 9 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3671 462 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A939.[MT7]-YLIGAAPIAYGLPVSLR.2y11_1.heavy 959.568 / 1185.7 22378.0 41.9610013961792 36 10 10 6 10 2.0497429920919337 48.78660416735547 0.035198211669921875 3 0.8479722178635175 3.124199116301244 22378.0 87.65833333333333 0.0 - - - - - - - 267.2 44 5 ESPL1 extra spindle pole bodies homolog 1 (S. cerevisiae) 3673 463 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1068.[MT7]-DSTLIMQLLR.3b4_1.heavy 445.259 / 561.3 4678.0 42.02345085144043 35 12 10 3 10 1.0930917715780089 63.88982021316758 0.072601318359375 3 0.8804151910108146 3.5326312326109464 4678.0 32.7740119760479 1.0 - - - - - - - 238.57142857142858 9 7 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3675 463 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1068.[MT7]-DSTLIMQLLR.3y4_1.heavy 445.259 / 529.346 5681.0 42.02345085144043 35 12 10 3 10 1.0930917715780089 63.88982021316758 0.072601318359375 3 0.8804151910108146 3.5326312326109464 5681.0 34.01796407185629 0.0 - - - - - - - 208.75 11 8 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3677 463 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1068.[MT7]-DSTLIMQLLR.3b3_1.heavy 445.259 / 448.216 3008.0 42.02345085144043 35 12 10 3 10 1.0930917715780089 63.88982021316758 0.072601318359375 3 0.8804151910108146 3.5326312326109464 3008.0 21.85453093812375 0.0 - - - - - - - 190.85714285714286 6 7 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3679 463 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1068.[MT7]-DSTLIMQLLR.3y5_1.heavy 445.259 / 660.386 3342.0 42.02345085144043 35 12 10 3 10 1.0930917715780089 63.88982021316758 0.072601318359375 3 0.8804151910108146 3.5326312326109464 3342.0 5.637005988023953 1.0 - - - - - - - 334.0 6 1 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3681 464 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1069.[MT7]-NDVEK[MT7].2b3_1.heavy 446.753 / 473.248 7895.0 14.414599895477295 46 20 10 6 10 4.571096031624574 21.87659137068268 0.035399436950683594 3 0.9921784292963649 13.945429778092588 7895.0 31.58835181242384 1.0 - - - - - - - 710.1428571428571 15 7 MAD2L2;ZCCHC8 MAD2 mitotic arrest deficient-like 2 (yeast);zinc finger, CCHC domain containing 8 3683 464 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1069.[MT7]-NDVEK[MT7].2y4_1.heavy 446.753 / 634.353 17252.0 14.414599895477295 46 20 10 6 10 4.571096031624574 21.87659137068268 0.035399436950683594 3 0.9921784292963649 13.945429778092588 17252.0 26.0631325530404 0.0 - - - - - - - 261.0 34 14 MAD2L2;ZCCHC8 MAD2 mitotic arrest deficient-like 2 (yeast);zinc finger, CCHC domain containing 8 3685 464 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1069.[MT7]-NDVEK[MT7].2b4_1.heavy 446.753 / 602.29 7310.0 14.414599895477295 46 20 10 6 10 4.571096031624574 21.87659137068268 0.035399436950683594 3 0.9921784292963649 13.945429778092588 7310.0 11.87094017094017 7.0 - - - - - - - 682.3333333333334 20 9 MAD2L2;ZCCHC8 MAD2 mitotic arrest deficient-like 2 (yeast);zinc finger, CCHC domain containing 8 3687 464 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1069.[MT7]-NDVEK[MT7].2y3_1.heavy 446.753 / 519.326 25732.0 14.414599895477295 46 20 10 6 10 4.571096031624574 21.87659137068268 0.035399436950683594 3 0.9921784292963649 13.945429778092588 25732.0 51.51815023000074 0.0 - - - - - - - 710.1428571428571 51 7 MAD2L2;ZCCHC8 MAD2 mitotic arrest deficient-like 2 (yeast);zinc finger, CCHC domain containing 8 3689 465 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1066.[MT7]-RVLGLELNK[MT7].3b6_1.heavy 443.953 / 812.511 51333.0 28.324800491333008 42 12 10 10 10 1.3145029264992776 60.7359893206723 0.0 3 0.8998215855188454 3.8661724934266375 51333.0 36.0248045341844 1.0 - - - - - - - 333.0 118 1 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3691 465 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1066.[MT7]-RVLGLELNK[MT7].3y3_1.heavy 443.953 / 518.342 107333.0 28.324800491333008 42 12 10 10 10 1.3145029264992776 60.7359893206723 0.0 3 0.8998215855188454 3.8661724934266375 107333.0 318.61970014992505 0.0 - - - - - - - 333.0 214 3 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3693 465 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1066.[MT7]-RVLGLELNK[MT7].3b4_1.heavy 443.953 / 570.384 53333.0 28.324800491333008 42 12 10 10 10 1.3145029264992776 60.7359893206723 0.0 3 0.8998215855188454 3.8661724934266375 53333.0 70.66392530183727 0.0 - - - - - - - 333.0 106 3 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3695 465 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1066.[MT7]-RVLGLELNK[MT7].3b5_1.heavy 443.953 / 683.469 52000.0 28.324800491333008 42 12 10 10 10 1.3145029264992776 60.7359893206723 0.0 3 0.8998215855188454 3.8661724934266375 52000.0 56.944410067723894 0.0 - - - - - - - 333.0 104 6 ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3697 466 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1067.[MT7]-IQVIK[MT7].2b3_1.heavy 444.81 / 485.32 64081.0 24.632099151611328 45 15 10 10 10 2.561347360803991 31.287718256754538 0.0 3 0.9591183956779024 6.082857380400192 64081.0 95.74157344611656 0.0 - - - - - - - 629.75 128 8 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 3699 466 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1067.[MT7]-IQVIK[MT7].2y4_1.heavy 444.81 / 631.426 207073.0 24.632099151611328 45 15 10 10 10 2.561347360803991 31.287718256754538 0.0 3 0.9591183956779024 6.082857380400192 207073.0 245.90581092984843 0.0 - - - - - - - 280.0 414 1 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 3701 466 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1067.[MT7]-IQVIK[MT7].2b4_1.heavy 444.81 / 598.404 24905.0 24.632099151611328 45 15 10 10 10 2.561347360803991 31.287718256754538 0.0 3 0.9591183956779024 6.082857380400192 24905.0 92.51191514346984 0.0 - - - - - - - 280.0 49 5 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 3703 466 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1067.[MT7]-IQVIK[MT7].2y3_1.heavy 444.81 / 503.367 124524.0 24.632099151611328 45 15 10 10 10 2.561347360803991 31.287718256754538 0.0 3 0.9591183956779024 6.082857380400192 124524.0 70.76238741958542 0.0 - - - - - - - 1279.0 249 7 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 3705 467 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A930.[MT7]-TLGEC[CAM]GFTSQTARPQAPATVGLAFR.3y23_2.heavy 927.481 / 1211.6 27421.0 32.01570129394531 35 5 10 10 10 0.46638781429953435 101.37855368467072 0.0 3 0.6682398692337702 2.0803585070125434 27421.0 134.3075898619769 0.0 - - - - - - - 286.0 54 4 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3707 467 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A930.[MT7]-TLGEC[CAM]GFTSQTARPQAPATVGLAFR.3y12_1.heavy 927.481 / 1227.68 9712.0 32.01570129394531 35 5 10 10 10 0.46638781429953435 101.37855368467072 0.0 3 0.6682398692337702 2.0803585070125434 9712.0 41.5713280105721 0.0 - - - - - - - 286.0 19 2 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3709 467 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A930.[MT7]-TLGEC[CAM]GFTSQTARPQAPATVGLAFR.3y10_1.heavy 927.481 / 1002.57 3142.0 32.01570129394531 35 5 10 10 10 0.46638781429953435 101.37855368467072 0.0 3 0.6682398692337702 2.0803585070125434 3142.0 21.917097902097904 0.0 - - - - - - - 286.0 6 4 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3711 467 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A930.[MT7]-TLGEC[CAM]GFTSQTARPQAPATVGLAFR.3y9_1.heavy 927.481 / 931.536 7998.0 32.01570129394531 35 5 10 10 10 0.46638781429953435 101.37855368467072 0.0 3 0.6682398692337702 2.0803585070125434 7998.0 26.10045997648052 1.0 - - - - - - - 286.0 17 6 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3713 468 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1168.[MT7]-ALLGPALK[MT7].2y4_1.heavy 535.862 / 572.389 91867.0 29.35059928894043 50 20 10 10 10 27.75209892429576 3.603331058770994 0.0 3 0.9993780746920027 49.484677473655594 91867.0 85.10665347946238 0.0 - - - - - - - 332.0 183 4 RFC2 replication factor C (activator 1) 2, 40kDa 3715 468 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1168.[MT7]-ALLGPALK[MT7].2y5_1.heavy 535.862 / 629.41 149242.0 29.35059928894043 50 20 10 10 10 27.75209892429576 3.603331058770994 0.0 3 0.9993780746920027 49.484677473655594 149242.0 176.21455566453216 0.0 - - - - - - - 332.0 298 2 RFC2 replication factor C (activator 1) 2, 40kDa 3717 468 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1168.[MT7]-ALLGPALK[MT7].2y6_1.heavy 535.862 / 742.494 66993.0 29.35059928894043 50 20 10 10 10 27.75209892429576 3.603331058770994 0.0 3 0.9993780746920027 49.484677473655594 66993.0 158.27240328338524 0.0 - - - - - - - 332.0 133 2 RFC2 replication factor C (activator 1) 2, 40kDa 3719 468 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1168.[MT7]-ALLGPALK[MT7].2y7_1.heavy 535.862 / 855.578 37808.0 29.35059928894043 50 20 10 10 10 27.75209892429576 3.603331058770994 0.0 3 0.9993780746920027 49.484677473655594 37808.0 89.32221311686638 0.0 - - - - - - - 332.0 75 2 RFC2 replication factor C (activator 1) 2, 40kDa 3721 469 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1483.[MT7]-YVYSVLDDVIPEEILGK[MT7].3y7_1.heavy 747.415 / 929.542 61532.0 45.6786994934082 45 15 10 10 10 3.353084752083922 29.823284346705105 0.0 3 0.9543563386188152 5.754481968380604 61532.0 143.4821710538401 0.0 - - - - - - - 215.6 123 5 MAP2K4 mitogen-activated protein kinase kinase 4 3723 469 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1483.[MT7]-YVYSVLDDVIPEEILGK[MT7].3b4_1.heavy 747.415 / 657.336 16831.0 45.6786994934082 45 15 10 10 10 3.353084752083922 29.823284346705105 0.0 3 0.9543563386188152 5.754481968380604 16831.0 116.37791821561338 0.0 - - - - - - - 221.21428571428572 33 14 MAP2K4 mitogen-activated protein kinase kinase 4 3725 469 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1483.[MT7]-YVYSVLDDVIPEEILGK[MT7].3b3_1.heavy 747.415 / 570.304 17638.0 45.6786994934082 45 15 10 10 10 3.353084752083922 29.823284346705105 0.0 3 0.9543563386188152 5.754481968380604 17638.0 44.615635277479896 0.0 - - - - - - - 239.44444444444446 35 9 MAP2K4 mitogen-activated protein kinase kinase 4 3727 469 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1483.[MT7]-YVYSVLDDVIPEEILGK[MT7].3b8_1.heavy 747.415 / 1099.54 24775.0 45.6786994934082 45 15 10 10 10 3.353084752083922 29.823284346705105 0.0 3 0.9543563386188152 5.754481968380604 24775.0 258.17439763183256 0.0 - - - - - - - 269.25 49 8 MAP2K4 mitogen-activated protein kinase kinase 4 3729 470 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1279.[MT7]-LGAFQAQEK[MT7].3y3_1.heavy 427.246 / 548.316 18461.0 25.387699127197266 48 18 10 10 10 3.8742295604415786 25.81158355226688 0.0 3 0.981351671572033 9.02329571135563 18461.0 45.78496018202503 0.0 - - - - - - - 293.0 36 6 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3731 470 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1279.[MT7]-LGAFQAQEK[MT7].3b4_1.heavy 427.246 / 533.32 40439.0 25.387699127197266 48 18 10 10 10 3.8742295604415786 25.81158355226688 0.0 3 0.981351671572033 9.02329571135563 40439.0 153.6589988623436 0.0 - - - - - - - 293.0 80 6 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3733 470 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1279.[MT7]-LGAFQAQEK[MT7].3b5_1.heavy 427.246 / 661.379 27546.0 25.387699127197266 48 18 10 10 10 3.8742295604415786 25.81158355226688 0.0 3 0.981351671572033 9.02329571135563 27546.0 129.7388395904437 0.0 - - - - - - - 293.0 55 2 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3735 470 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1279.[MT7]-LGAFQAQEK[MT7].3y4_1.heavy 427.246 / 619.353 26080.0 25.387699127197266 48 18 10 10 10 3.8742295604415786 25.81158355226688 0.0 3 0.981351671572033 9.02329571135563 26080.0 110.37269624573378 0.0 - - - - - - - 293.0 52 6 PRIM1 primase, DNA, polypeptide 1 (49kDa) 3737 471 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1166.[MT7]-LSRLPLAR.3y3_1.heavy 357.237 / 359.24 34271.0 26.12619972229004 47 20 9 10 8 8.170390680550774 12.239316809910356 0.0 4 0.9957723705400074 18.97408274668159 34271.0 19.967910631091566 0.0 - - - - - - - 309.0 68 2 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 3739 471 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1166.[MT7]-LSRLPLAR.3y4_1.heavy 357.237 / 456.293 92623.0 26.12619972229004 47 20 9 10 8 8.170390680550774 12.239316809910356 0.0 4 0.9957723705400074 18.97408274668159 92623.0 57.9629809948009 2.0 - - - - - - - 309.0 230 2 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 3741 471 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1166.[MT7]-LSRLPLAR.3y1_1.heavy 357.237 / 175.119 45077.0 26.12619972229004 47 20 9 10 8 8.170390680550774 12.239316809910356 0.0 4 0.9957723705400074 18.97408274668159 45077.0 48.11863292847504 0.0 - - - - - - - 309.0 90 7 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 3743 471 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1166.[MT7]-LSRLPLAR.3y5_1.heavy 357.237 / 569.377 31801.0 26.12619972229004 47 20 9 10 8 8.170390680550774 12.239316809910356 0.0 4 0.9957723705400074 18.97408274668159 31801.0 36.63463883044797 1.0 - - - - - - - 309.0 104 2 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 3745 472 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1277.[MT7]-LSDEPVEAK[MT7].2y8_1.heavy 638.355 / 1018.52 23398.0 21.94849967956543 48 18 10 10 10 3.537207627773926 28.270887808452763 0.0 3 0.984104868783157 9.775823756676234 23398.0 51.02497185185185 0.0 - - - - - - - 309.375 46 8 RNASEH2B ribonuclease H2, subunit B 3747 472 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1277.[MT7]-LSDEPVEAK[MT7].2y5_1.heavy 638.355 / 687.416 40047.0 21.94849967956543 48 18 10 10 10 3.537207627773926 28.270887808452763 0.0 3 0.984104868783157 9.775823756676234 40047.0 52.20942222222223 0.0 - - - - - - - 385.7142857142857 80 7 RNASEH2B ribonuclease H2, subunit B 3749 472 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1277.[MT7]-LSDEPVEAK[MT7].2b4_1.heavy 638.355 / 589.295 37347.0 21.94849967956543 48 18 10 10 10 3.537207627773926 28.270887808452763 0.0 3 0.984104868783157 9.775823756676234 37347.0 87.97293333333333 0.0 - - - - - - - 306.8181818181818 74 11 RNASEH2B ribonuclease H2, subunit B 3751 472 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1277.[MT7]-LSDEPVEAK[MT7].2y6_1.heavy 638.355 / 816.458 25648.0 21.94849967956543 48 18 10 10 10 3.537207627773926 28.270887808452763 0.0 3 0.984104868783157 9.775823756676234 25648.0 41.796740740740745 0.0 - - - - - - - 315.0 51 10 RNASEH2B ribonuclease H2, subunit B 3753 473 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1278.[MT7]-ARVQFGANK[MT7].3b4_1.heavy 426.922 / 599.375 14224.0 20.016200065612793 39 16 10 5 8 3.1364826156642303 31.882848481474028 0.04099845886230469 4 0.9650786013928863 6.584829547802501 14224.0 51.723636363636366 0.0 - - - - - - - 365.75 28 8 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 3755 473 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1278.[MT7]-ARVQFGANK[MT7].3y7_2.heavy 426.922 / 454.259 25310.0 20.016200065612793 39 16 10 5 8 3.1364826156642303 31.882848481474028 0.04099845886230469 4 0.9650786013928863 6.584829547802501 25310.0 22.504982723642723 0.0 - - - - - - - 287.375 50 8 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 3757 473 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1278.[MT7]-ARVQFGANK[MT7].3b3_1.heavy 426.922 / 471.316 21336.0 20.016200065612793 39 16 10 5 8 3.1364826156642303 31.882848481474028 0.04099845886230469 4 0.9650786013928863 6.584829547802501 21336.0 57.25660890806566 1.0 - - - - - - - 298.57142857142856 91 7 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 3759 473 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1278.[MT7]-ARVQFGANK[MT7].3y4_1.heavy 426.922 / 533.316 48529.0 20.016200065612793 39 16 10 5 8 3.1364826156642303 31.882848481474028 0.04099845886230469 4 0.9650786013928863 6.584829547802501 48529.0 67.83698896943469 0.0 - - - - - - - 298.57142857142856 97 7 UBE2Q1;UBE2Q2 ubiquitin-conjugating enzyme E2Q family member 1;ubiquitin-conjugating enzyme E2Q family member 2 3761 474 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1169.[MT7]-LDDFFK[MT7].2y4_1.heavy 536.799 / 700.379 24269.0 34.68230056762695 45 15 10 10 10 2.009193485794332 40.84901911780938 0.0 3 0.9589889370117017 6.0731824648957975 24269.0 30.255021785008243 0.0 - - - - - - - 720.0 48 8 FEN1 flap structure-specific endonuclease 1 3763 474 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1169.[MT7]-LDDFFK[MT7].2y5_1.heavy 536.799 / 815.406 39900.0 34.68230056762695 45 15 10 10 10 2.009193485794332 40.84901911780938 0.0 3 0.9589889370117017 6.0731824648957975 39900.0 271.3912550492523 0.0 - - - - - - - 297.1111111111111 79 9 FEN1 flap structure-specific endonuclease 1 3765 474 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1169.[MT7]-LDDFFK[MT7].2b4_1.heavy 536.799 / 635.316 13163.0 34.68230056762695 45 15 10 10 10 2.009193485794332 40.84901911780938 0.0 3 0.9589889370117017 6.0731824648957975 13163.0 34.25034758006581 0.0 - - - - - - - 274.3333333333333 26 6 FEN1 flap structure-specific endonuclease 1 3767 474 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1169.[MT7]-LDDFFK[MT7].2y3_1.heavy 536.799 / 585.352 60261.0 34.68230056762695 45 15 10 10 10 2.009193485794332 40.84901911780938 0.0 3 0.9589889370117017 6.0731824648957975 60261.0 51.5745751694462 0.0 - - - - - - - 411.0 120 6 FEN1 flap structure-specific endonuclease 1 3769 475 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1276.[MT7]-DYPLRPPK[MT7].3y6_1.heavy 425.255 / 851.558 3070.0 22.774974822998047 32 13 10 3 6 2.593721976641934 38.55463341890984 0.07049942016601562 6 0.9215080355506676 4.375898757320247 3070.0 -0.1533032185206098 3.0 - - - - - - - 283.2 7 10 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 3771 475 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1276.[MT7]-DYPLRPPK[MT7].3y3_1.heavy 425.255 / 485.32 51003.0 22.774974822998047 32 13 10 3 6 2.593721976641934 38.55463341890984 0.07049942016601562 6 0.9215080355506676 4.375898757320247 51003.0 11.920278738089642 0.0 - - - - - - - 1653.0 102 1 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 3773 475 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1276.[MT7]-DYPLRPPK[MT7].3b4_1.heavy 425.255 / 633.336 6848.0 22.774974822998047 32 13 10 3 6 2.593721976641934 38.55463341890984 0.07049942016601562 6 0.9215080355506676 4.375898757320247 6848.0 -0.5 5.0 - - - - - - - 303.42857142857144 66 7 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 3775 475 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1276.[MT7]-DYPLRPPK[MT7].3y7_2.heavy 425.255 / 507.815 48878.0 22.774974822998047 32 13 10 3 6 2.593721976641934 38.55463341890984 0.07049942016601562 6 0.9215080355506676 4.375898757320247 48878.0 30.25928384140108 0.0 - - - - - - - 236.0 97 1 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 3777 476 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A826.[MT7]-ESSTVFELK[MT7].3y3_1.heavy 443.25 / 533.341 21241.0 29.91710090637207 46 16 10 10 10 3.286830405072516 25.027306126958326 0.0 3 0.9639738267534287 6.4824738634389165 21241.0 37.0582104392356 0.0 - - - - - - - 327.0 42 2 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3779 476 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A826.[MT7]-ESSTVFELK[MT7].3b4_1.heavy 443.25 / 549.264 19607.0 29.91710090637207 46 16 10 10 10 3.286830405072516 25.027306126958326 0.0 3 0.9639738267534287 6.4824738634389165 19607.0 32.207979232703025 0.0 - - - - - - - 327.0 39 4 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3781 476 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A826.[MT7]-ESSTVFELK[MT7].3y4_1.heavy 443.25 / 680.41 16993.0 29.91710090637207 46 16 10 10 10 3.286830405072516 25.027306126958326 0.0 3 0.9639738267534287 6.4824738634389165 16993.0 9.602318781311023 1.0 - - - - - - - 327.0 39 2 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3783 476 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A826.[MT7]-ESSTVFELK[MT7].3b3_1.heavy 443.25 / 448.216 8170.0 29.91710090637207 46 16 10 10 10 3.286830405072516 25.027306126958326 0.0 3 0.9639738267534287 6.4824738634389165 8170.0 32.230275229357794 0.0 - - - - - - - 327.0 16 3 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3785 477 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1293.[MT7]-AQQAC[CAM]IEAK[MT7].2y5_1.heavy 653.855 / 764.409 20203.0 18.4606990814209 47 17 10 10 10 9.798255664529838 10.205898215332843 0.0 3 0.9770850364335578 8.13710570679848 20203.0 116.7066504854369 0.0 - - - - - - - 309.0 40 6 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3787 477 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1293.[MT7]-AQQAC[CAM]IEAK[MT7].2b4_1.heavy 653.855 / 543.301 19996.0 18.4606990814209 47 17 10 10 10 9.798255664529838 10.205898215332843 0.0 3 0.9770850364335578 8.13710570679848 19996.0 51.66133380406002 0.0 - - - - - - - 706.7142857142857 39 7 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3789 477 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1293.[MT7]-AQQAC[CAM]IEAK[MT7].2y6_1.heavy 653.855 / 835.446 14430.0 18.4606990814209 47 17 10 10 10 9.798255664529838 10.205898215332843 0.0 3 0.9770850364335578 8.13710570679848 14430.0 34.08978181818182 0.0 - - - - - - - 309.0 28 6 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3791 477 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1293.[MT7]-AQQAC[CAM]IEAK[MT7].2b7_1.heavy 653.855 / 945.458 15461.0 18.4606990814209 47 17 10 10 10 9.798255664529838 10.205898215332843 0.0 3 0.9770850364335578 8.13710570679848 15461.0 122.33703883495144 0.0 - - - - - - - 257.5 30 8 STUB1 STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase 3793 478 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1488.[MT7]-FSPNTSQFLLVSSWDTSVR.3b4_1.heavy 772.398 / 590.305 9661.0 41.25454902648926 41 15 10 6 10 3.7570324446891235 21.23053853862718 0.03820037841796875 3 0.9562255105757603 5.876986644365959 9661.0 10.790002198153552 0.0 - - - - - - - 327.27272727272725 19 11 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 3795 478 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1488.[MT7]-FSPNTSQFLLVSSWDTSVR.3y8_1.heavy 772.398 / 937.437 34387.0 41.25454902648926 41 15 10 6 10 3.7570324446891235 21.23053853862718 0.03820037841796875 3 0.9562255105757603 5.876986644365959 34387.0 37.67053864353942 0.0 - - - - - - - 368.25 68 4 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 3797 478 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1488.[MT7]-FSPNTSQFLLVSSWDTSVR.3b7_1.heavy 772.398 / 906.444 22761.0 41.25454902648926 41 15 10 6 10 3.7570324446891235 21.23053853862718 0.03820037841796875 3 0.9562255105757603 5.876986644365959 22761.0 23.110012309659883 0.0 - - - - - - - 1286.5714285714287 45 7 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 3799 478 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1488.[MT7]-FSPNTSQFLLVSSWDTSVR.3y9_1.heavy 772.398 / 1036.51 25872.0 41.25454902648926 41 15 10 6 10 3.7570324446891235 21.23053853862718 0.03820037841796875 3 0.9562255105757603 5.876986644365959 25872.0 19.198933576392843 0.0 - - - - - - - 859.625 51 8 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) 3801 479 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A829.[MT7]-DSTLIMQLLR.2b4_1.heavy 667.385 / 561.3 23222.0 42.0324010848999 44 18 10 6 10 2.618270239073239 26.629451490364946 0.036800384521484375 3 0.9821071704013349 9.21240789626779 23222.0 76.49810053885699 0.0 - - - - - - - 286.2857142857143 46 7 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3803 479 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A829.[MT7]-DSTLIMQLLR.2y9_1.heavy 667.385 / 1074.63 25895.0 42.0324010848999 44 18 10 6 10 2.618270239073239 26.629451490364946 0.036800384521484375 3 0.9821071704013349 9.21240789626779 25895.0 79.84250108608512 0.0 - - - - - - - 200.4 51 10 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3805 479 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A829.[MT7]-DSTLIMQLLR.2y6_1.heavy 667.385 / 773.47 31576.0 42.0324010848999 44 18 10 6 10 2.618270239073239 26.629451490364946 0.036800384521484375 3 0.9821071704013349 9.21240789626779 31576.0 60.50491017964072 0.0 - - - - - - - 1052.1 63 10 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3807 479 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A829.[MT7]-DSTLIMQLLR.2b5_1.heavy 667.385 / 674.384 20716.0 42.0324010848999 44 18 10 6 10 2.618270239073239 26.629451490364946 0.036800384521484375 3 0.9821071704013349 9.21240789626779 20716.0 52.47226347305389 0.0 - - - - - - - 596.4285714285714 41 7 YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide;stratifin;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide;tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 3809 480 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1290.[MT7]-GQDTVPESTAR.2y8_1.heavy 652.832 / 860.447 48879.0 16.700600624084473 37 14 10 3 10 1.867336654387274 46.33067419144776 0.05159950256347656 3 0.9493212315247158 5.458809447488998 48879.0 105.35448152866242 0.0 - - - - - - - 701.0 97 7 GADD45G growth arrest and DNA-damage-inducible, gamma 3811 480 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1290.[MT7]-GQDTVPESTAR.2b4_1.heavy 652.832 / 546.264 15901.0 16.700600624084473 37 14 10 3 10 1.867336654387274 46.33067419144776 0.05159950256347656 3 0.9493212315247158 5.458809447488998 15901.0 85.77082924188352 0.0 - - - - - - - 841.5714285714286 31 7 GADD45G growth arrest and DNA-damage-inducible, gamma 3813 480 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1290.[MT7]-GQDTVPESTAR.2y6_1.heavy 652.832 / 660.331 40438.0 16.700600624084473 37 14 10 3 10 1.867336654387274 46.33067419144776 0.05159950256347656 3 0.9493212315247158 5.458809447488998 40438.0 48.35341673210581 0.0 - - - - - - - 314.2 80 5 GADD45G growth arrest and DNA-damage-inducible, gamma 3815 480 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1290.[MT7]-GQDTVPESTAR.2b5_1.heavy 652.832 / 645.332 32783.0 16.700600624084473 37 14 10 3 10 1.867336654387274 46.33067419144776 0.05159950256347656 3 0.9493212315247158 5.458809447488998 32783.0 64.85909850442832 0.0 - - - - - - - 757.1428571428571 65 7 GADD45G growth arrest and DNA-damage-inducible, gamma 3817 481 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1162.[MT7]-GVGPGC[CAM]NTR.2y8_1.heavy 531.268 / 860.404 7197.0 15.29520034790039 46 16 10 10 10 2.4851392620570243 31.8895683802275 0.0 3 0.9697633309700386 7.079375979355686 7197.0 31.764413563090606 0.0 - - - - - - - 239.8 14 5 E2F4 E2F transcription factor 4, p107/p130-binding 3819 481 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1162.[MT7]-GVGPGC[CAM]NTR.2y6_1.heavy 531.268 / 704.314 9939.0 15.29520034790039 46 16 10 10 10 2.4851392620570243 31.8895683802275 0.0 3 0.9697633309700386 7.079375979355686 9939.0 62.56117311761896 0.0 - - - - - - - 217.9090909090909 19 11 E2F4 E2F transcription factor 4, p107/p130-binding 3821 481 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1162.[MT7]-GVGPGC[CAM]NTR.2b5_1.heavy 531.268 / 512.295 1714.0 15.29520034790039 46 16 10 10 10 2.4851392620570243 31.8895683802275 0.0 3 0.9697633309700386 7.079375979355686 1714.0 0.06817970580439453 7.0 - - - - - - - 249.1818181818182 3 11 E2F4 E2F transcription factor 4, p107/p130-binding 3823 481 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1162.[MT7]-GVGPGC[CAM]NTR.2y7_1.heavy 531.268 / 761.336 14566.0 15.29520034790039 46 16 10 10 10 2.4851392620570243 31.8895683802275 0.0 3 0.9697633309700386 7.079375979355686 14566.0 63.262954736013285 0.0 - - - - - - - 205.4 29 10 E2F4 E2F transcription factor 4, p107/p130-binding 3825 482 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1484.[MT7]-QATTIIADNIIFLSDQTK[MT7].2b5_1.heavy 1140.64 / 659.385 3486.0 41.59159851074219 45 15 10 10 10 1.801027711945314 49.11517003462414 0.0 3 0.9518663923735343 5.602483293260551 3486.0 16.450000000000003 0.0 - - - - - - - 235.16666666666666 6 12 SSBP1 single-stranded DNA binding protein 1 3827 482 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1484.[MT7]-QATTIIADNIIFLSDQTK[MT7].2y5_1.heavy 1140.64 / 722.38 N/A 41.59159851074219 45 15 10 10 10 1.801027711945314 49.11517003462414 0.0 3 0.9518663923735343 5.602483293260551 996.0 5.5200000000000005 0.0 - - - - - - - 0.0 1 0 SSBP1 single-stranded DNA binding protein 1 3829 482 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1484.[MT7]-QATTIIADNIIFLSDQTK[MT7].2b4_1.heavy 1140.64 / 546.3 2324.0 41.59159851074219 45 15 10 10 10 1.801027711945314 49.11517003462414 0.0 3 0.9518663923735343 5.602483293260551 2324.0 10.5 0.0 - - - - - - - 249.0 4 8 SSBP1 single-stranded DNA binding protein 1 3831 482 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1484.[MT7]-QATTIIADNIIFLSDQTK[MT7].2b10_1.heavy 1140.64 / 1185.66 1826.0 41.59159851074219 45 15 10 10 10 1.801027711945314 49.11517003462414 0.0 3 0.9518663923735343 5.602483293260551 1826.0 9.9 0.0 - - - - - - - 249.0 3 4 SSBP1 single-stranded DNA binding protein 1 3833 483 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1292.[MT7]-DDQLLDDGK[MT7].2y4_1.heavy 653.84 / 578.29 33927.0 23.85540008544922 37 13 10 6 8 13.233084414223509 7.556817206766667 0.037799835205078125 4 0.9171542192083115 4.257770761109957 33927.0 42.43232351306281 0.0 - - - - - - - 257.0 67 1 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3835 483 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1292.[MT7]-DDQLLDDGK[MT7].2b3_1.heavy 653.84 / 503.222 32642.0 23.85540008544922 37 13 10 6 8 13.233084414223509 7.556817206766667 0.037799835205078125 4 0.9171542192083115 4.257770761109957 32642.0 98.434046692607 0.0 - - - - - - - 642.5 65 10 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3837 483 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1292.[MT7]-DDQLLDDGK[MT7].2y5_1.heavy 653.84 / 691.374 38040.0 23.85540008544922 37 13 10 6 8 13.233084414223509 7.556817206766667 0.037799835205078125 4 0.9171542192083115 4.257770761109957 38040.0 65.12684824902725 0.0 - - - - - - - 656.7777777777778 76 9 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3839 483 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1292.[MT7]-DDQLLDDGK[MT7].2b4_1.heavy 653.84 / 616.306 37268.0 23.85540008544922 37 13 10 6 8 13.233084414223509 7.556817206766667 0.037799835205078125 4 0.9171542192083115 4.257770761109957 37268.0 25.7395719844358 1.0 - - - - - - - 257.0 80 3 TCEB2 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 3841 484 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A828.[MT7]-RVLGLELNK[MT7].2b8_1.heavy 665.426 / 1039.64 N/A N/A - - - - - - - - - 0.0 - - - - - - - ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3843 484 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A828.[MT7]-RVLGLELNK[MT7].2y3_1.heavy 665.426 / 518.342 N/A N/A - - - - - - - - - 0.0 - - - - - - - ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3845 484 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A828.[MT7]-RVLGLELNK[MT7].2b6_1.heavy 665.426 / 812.511 N/A N/A - - - - - - - - - 0.0 - - - - - - - ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3847 484 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A828.[MT7]-RVLGLELNK[MT7].2y6_1.heavy 665.426 / 817.49 N/A N/A - - - - - - - - - 0.0 - - - - - - - ERCC8 excision repair cross-complementing rodent repair deficiency, complementation group 8 3849 485 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1291.[MT7]-YRDVLPEIR.3b4_1.heavy 435.586 / 678.369 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAG3 stromal antigen 3 3851 485 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1291.[MT7]-YRDVLPEIR.3b3_1.heavy 435.586 / 579.301 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAG3 stromal antigen 3 3853 485 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1291.[MT7]-YRDVLPEIR.3y4_1.heavy 435.586 / 514.298 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAG3 stromal antigen 3 3855 485 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1291.[MT7]-YRDVLPEIR.3b7_2.heavy 435.586 / 509.278 N/A N/A - - - - - - - - - 0.0 - - - - - - - STAG3 stromal antigen 3 3857 486 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1486.[MT7]-QATTIIADNIIFLSDQTK[MT7].3b6_1.heavy 760.761 / 772.469 65025.0 41.59159851074219 44 14 10 10 10 1.4418124052759176 40.857155004510474 0.0 3 0.940756181933699 5.045138220529479 65025.0 156.69986543629307 0.0 - - - - - - - 290.5 130 8 SSBP1 single-stranded DNA binding protein 1 3859 486 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1486.[MT7]-QATTIIADNIIFLSDQTK[MT7].3b4_1.heavy 760.761 / 546.3 35333.0 41.59159851074219 44 14 10 10 10 1.4418124052759176 40.857155004510474 0.0 3 0.940756181933699 5.045138220529479 35333.0 114.22917670682733 0.0 - - - - - - - 392.3636363636364 70 11 SSBP1 single-stranded DNA binding protein 1 3861 486 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1486.[MT7]-QATTIIADNIIFLSDQTK[MT7].3b5_1.heavy 760.761 / 659.385 93391.0 41.59159851074219 44 14 10 10 10 1.4418124052759176 40.857155004510474 0.0 3 0.940756181933699 5.045138220529479 93391.0 108.53857630493727 0.0 - - - - - - - 295.1111111111111 186 9 SSBP1 single-stranded DNA binding protein 1 3863 486 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1486.[MT7]-QATTIIADNIIFLSDQTK[MT7].3y5_1.heavy 760.761 / 722.38 95879.0 41.59159851074219 44 14 10 10 10 1.4418124052759176 40.857155004510474 0.0 3 0.940756181933699 5.045138220529479 95879.0 175.76606648771048 0.0 - - - - - - - 311.25 191 8 SSBP1 single-stranded DNA binding protein 1 3865 487 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1063.[MT7]-LGFLHSGTAK[MT7].3b4_1.heavy 440.262 / 575.367 53497.0 26.675899505615234 43 13 10 10 10 1.4987509457804395 44.728307887408114 0.0 3 0.9154061011961674 4.212914776950258 53497.0 72.19265330577534 0.0 - - - - - - - 318.0 106 4 TP53 tumor protein p53 3867 487 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1063.[MT7]-LGFLHSGTAK[MT7].3y4_1.heavy 440.262 / 520.321 34709.0 26.675899505615234 43 13 10 10 10 1.4987509457804395 44.728307887408114 0.0 3 0.9154061011961674 4.212914776950258 34709.0 64.68845131219481 0.0 - - - - - - - 318.0 69 6 TP53 tumor protein p53 3869 487 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1063.[MT7]-LGFLHSGTAK[MT7].3b3_1.heavy 440.262 / 462.283 44899.0 26.675899505615234 43 13 10 10 10 1.4987509457804395 44.728307887408114 0.0 3 0.9154061011961674 4.212914776950258 44899.0 23.296046477625595 0.0 - - - - - - - 318.0 89 2 TP53 tumor protein p53 3871 487 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1063.[MT7]-LGFLHSGTAK[MT7].3y5_1.heavy 440.262 / 607.353 52860.0 26.675899505615234 43 13 10 10 10 1.4987509457804395 44.728307887408114 0.0 3 0.9154061011961674 4.212914776950258 52860.0 68.07277667732417 0.0 - - - - - - - 318.0 105 4 TP53 tumor protein p53 3873 488 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1062.[MT7]-GC[CAM]LLK[MT7].2y4_1.heavy 439.772 / 677.414 20541.0 22.476399421691895 43 17 10 6 10 1.6829214861517967 39.184995747117476 0.034000396728515625 3 0.9761594113853075 7.976957294975406 20541.0 94.002467198038 0.0 - - - - - - - 296.8181818181818 41 11 RCHY1;TIGD7 ring finger and CHY zinc finger domain containing 1;tigger transposable element derived 7 3875 488 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1062.[MT7]-GC[CAM]LLK[MT7].2b3_1.heavy 439.772 / 475.246 30111.0 22.476399421691895 43 17 10 6 10 1.6829214861517967 39.184995747117476 0.034000396728515625 3 0.9761594113853075 7.976957294975406 30111.0 32.9698401401027 0.0 - - - - - - - 467.0 60 2 RCHY1;TIGD7 ring finger and CHY zinc finger domain containing 1;tigger transposable element derived 7 3877 488 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1062.[MT7]-GC[CAM]LLK[MT7].2b4_1.heavy 439.772 / 588.33 19840.0 22.476399421691895 43 17 10 6 10 1.6829214861517967 39.184995747117476 0.034000396728515625 3 0.9761594113853075 7.976957294975406 19840.0 22.52172191643661 0.0 - - - - - - - 787.75 39 8 RCHY1;TIGD7 ring finger and CHY zinc finger domain containing 1;tigger transposable element derived 7 3879 488 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1062.[MT7]-GC[CAM]LLK[MT7].2y3_1.heavy 439.772 / 517.383 20074.0 22.476399421691895 43 17 10 6 10 1.6829214861517967 39.184995747117476 0.034000396728515625 3 0.9761594113853075 7.976957294975406 20074.0 33.263130932830116 0.0 - - - - - - - 437.75 40 8 RCHY1;TIGD7 ring finger and CHY zinc finger domain containing 1;tigger transposable element derived 7 3881 489 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1065.[MT7]-VFAEK[MT7].2y4_1.heavy 441.27 / 638.363 182552.0 22.29004955291748 35 11 10 6 8 1.046654747812904 63.44864780827031 0.034198760986328125 4 0.8597876941892691 3.256560310402654 182552.0 834.2121103019279 0.0 - - - - - - - 412.2 365 5 PIK3AP1;ORC4;KIAA0195 phosphoinositide-3-kinase adaptor protein 1;origin recognition complex, subunit 4;KIAA0195 3883 489 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1065.[MT7]-VFAEK[MT7].2b4_1.heavy 441.27 / 591.326 15327.0 22.29004955291748 35 11 10 6 8 1.046654747812904 63.44864780827031 0.034198760986328125 4 0.8597876941892691 3.256560310402654 15327.0 12.504979248531944 1.0 - - - - - - - 305.3333333333333 32 6 PIK3AP1;ORC4;KIAA0195 phosphoinositide-3-kinase adaptor protein 1;origin recognition complex, subunit 4;KIAA0195 3885 489 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1065.[MT7]-VFAEK[MT7].2y3_1.heavy 441.27 / 491.295 54445.0 22.29004955291748 35 11 10 6 8 1.046654747812904 63.44864780827031 0.034198760986328125 4 0.8597876941892691 3.256560310402654 54445.0 69.44298459430611 0.0 - - - - - - - 343.5 108 4 PIK3AP1;ORC4;KIAA0195 phosphoinositide-3-kinase adaptor protein 1;origin recognition complex, subunit 4;KIAA0195 3887 489 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1065.[MT7]-VFAEK[MT7].2y1_1.heavy 441.27 / 291.215 54674.0 22.29004955291748 35 11 10 6 8 1.046654747812904 63.44864780827031 0.034198760986328125 4 0.8597876941892691 3.256560310402654 54674.0 9.671731694004123 2.0 - - - - - - - 3431.0 132 1 PIK3AP1;ORC4;KIAA0195 phosphoinositide-3-kinase adaptor protein 1;origin recognition complex, subunit 4;KIAA0195 3889 490 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A728.[MT7]-VTGSLSSAK[MT7].2y4_1.heavy 569.34 / 536.316 26947.0 20.436800003051758 48 18 10 10 10 10.201750038850752 9.802239774467676 0.0 3 0.9857532918808743 10.327332237606408 26947.0 15.023633353745016 0.0 - - - - - - - 1299.5 53 8 FEN1 flap structure-specific endonuclease 1 3891 490 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A728.[MT7]-VTGSLSSAK[MT7].2y8_1.heavy 569.34 / 894.501 53257.0 20.436800003051758 48 18 10 10 10 10.201750038850752 9.802239774467676 0.0 3 0.9857532918808743 10.327332237606408 53257.0 23.895083037427497 0.0 - - - - - - - 1242.7142857142858 106 7 FEN1 flap structure-specific endonuclease 1 3893 490 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A728.[MT7]-VTGSLSSAK[MT7].2y5_1.heavy 569.34 / 649.4 11882.0 20.436800003051758 48 18 10 10 10 10.201750038850752 9.802239774467676 0.0 3 0.9857532918808743 10.327332237606408 11882.0 10.883339114996524 0.0 - - - - - - - 275.6 23 10 FEN1 flap structure-specific endonuclease 1 3895 490 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A728.[MT7]-VTGSLSSAK[MT7].2y7_1.heavy 569.34 / 793.454 23976.0 20.436800003051758 48 18 10 10 10 10.201750038850752 9.802239774467676 0.0 3 0.9857532918808743 10.327332237606408 23976.0 30.87385763556492 0.0 - - - - - - - 339.2 47 10 FEN1 flap structure-specific endonuclease 1 3897 491 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A821.[MT7]-YLQETYSK[MT7].2y4_1.heavy 660.358 / 642.358 16570.0 24.718299865722656 43 13 10 10 10 1.6413923250761455 50.72342944072535 0.0 3 0.9235892265941987 4.435883151958828 16570.0 13.678575695339958 0.0 - - - - - - - 644.3333333333334 33 3 UBE2C ubiquitin-conjugating enzyme E2C 3899 491 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A821.[MT7]-YLQETYSK[MT7].2y5_1.heavy 660.358 / 771.401 16018.0 24.718299865722656 43 13 10 10 10 1.6413923250761455 50.72342944072535 0.0 3 0.9235892265941987 4.435883151958828 16018.0 76.60782608695652 0.0 - - - - - - - 276.0 32 7 UBE2C ubiquitin-conjugating enzyme E2C 3901 491 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A821.[MT7]-YLQETYSK[MT7].2y3_1.heavy 660.358 / 541.31 12428.0 24.718299865722656 43 13 10 10 10 1.6413923250761455 50.72342944072535 0.0 3 0.9235892265941987 4.435883151958828 12428.0 24.439356843823173 0.0 - - - - - - - 749.8571428571429 24 7 UBE2C ubiquitin-conjugating enzyme E2C 3903 491 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A821.[MT7]-YLQETYSK[MT7].2y7_1.heavy 660.358 / 1012.54 19608.0 24.718299865722656 43 13 10 10 10 1.6413923250761455 50.72342944072535 0.0 3 0.9235892265941987 4.435883151958828 19608.0 93.77739130434783 0.0 - - - - - - - 591.5714285714286 39 7 UBE2C ubiquitin-conjugating enzyme E2C 3905 492 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A822.[MT7]-EVWLNMLK[MT7].2y4_1.heavy 660.883 / 649.382 26271.0 38.75149917602539 40 13 9 10 8 1.4800977301950629 44.79102685623896 0.0 4 0.9167704037160387 4.247801854499027 26271.0 18.69497201119552 0.0 - - - - - - - 1258.2857142857142 52 7 CCNE2 cyclin E2 3907 492 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A822.[MT7]-EVWLNMLK[MT7].2b3_1.heavy 660.883 / 559.3 28193.0 38.75149917602539 40 13 9 10 8 1.4800977301950629 44.79102685623896 0.0 4 0.9167704037160387 4.247801854499027 28193.0 30.975458448939307 3.0 - - - - - - - 280.0 72 4 CCNE2 cyclin E2 3909 492 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A822.[MT7]-EVWLNMLK[MT7].2y5_1.heavy 660.883 / 762.466 22426.0 38.75149917602539 40 13 9 10 8 1.4800977301950629 44.79102685623896 0.0 4 0.9167704037160387 4.247801854499027 22426.0 76.24611609329237 0.0 - - - - - - - 801.0 44 7 CCNE2 cyclin E2 3911 492 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A822.[MT7]-EVWLNMLK[MT7].2b4_1.heavy 660.883 / 672.384 32678.0 38.75149917602539 40 13 9 10 8 1.4800977301950629 44.79102685623896 0.0 4 0.9167704037160387 4.247801854499027 32678.0 40.18455680399501 0.0 - - - - - - - 801.0 65 8 CCNE2 cyclin E2 3913 493 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A919.[MT7]-FITEIWHPNVDK[MT7].3b4_1.heavy 596.329 / 635.352 47283.0 34.909000396728516 41 16 10 5 10 3.73484214931418 26.7748932892285 0.040802001953125 3 0.9657714097334312 6.651525212956871 47283.0 29.722644304205346 0.0 - - - - - - - 300.5 94 4 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 3915 493 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A919.[MT7]-FITEIWHPNVDK[MT7].3b3_1.heavy 596.329 / 506.31 6011.0 34.909000396728516 41 16 10 5 10 3.73484214931418 26.7748932892285 0.040802001953125 3 0.9657714097334312 6.651525212956871 6011.0 7.106897939525095 0.0 - - - - - - - 364.45454545454544 12 11 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 3917 493 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A919.[MT7]-FITEIWHPNVDK[MT7].3y4_1.heavy 596.329 / 619.353 19434.0 34.909000396728516 41 16 10 5 10 3.73484214931418 26.7748932892285 0.040802001953125 3 0.9657714097334312 6.651525212956871 19434.0 26.68233532164644 0.0 - - - - - - - 651.0 38 8 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 3919 493 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A919.[MT7]-FITEIWHPNVDK[MT7].3y5_1.heavy 596.329 / 716.406 80341.0 34.909000396728516 41 16 10 5 10 3.73484214931418 26.7748932892285 0.040802001953125 3 0.9657714097334312 6.651525212956871 80341.0 55.38542796005706 1.0 - - - - - - - 1230.5714285714287 160 7 UBE2G1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 3921 494 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1061.[MT7]-LEVFAR.2y4_1.heavy 439.764 / 492.293 59390.0 29.96820068359375 45 15 10 10 10 4.9371946300604295 20.254417233451466 0.0 3 0.9585722100264303 6.042346770436799 59390.0 179.1704441041348 0.0 - - - - - - - 326.0 118 3 RFC2 replication factor C (activator 1) 2, 40kDa 3923 494 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1061.[MT7]-LEVFAR.2b3_1.heavy 439.764 / 486.304 35895.0 29.96820068359375 45 15 10 10 10 4.9371946300604295 20.254417233451466 0.0 3 0.9585722100264303 6.042346770436799 35895.0 137.96598663967865 0.0 - - - - - - - 326.0 71 4 RFC2 replication factor C (activator 1) 2, 40kDa 3925 494 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1061.[MT7]-LEVFAR.2y5_1.heavy 439.764 / 621.336 116822.0 29.96820068359375 45 15 10 10 10 4.9371946300604295 20.254417233451466 0.0 3 0.9585722100264303 6.042346770436799 116822.0 189.3951958695285 0.0 - - - - - - - 326.0 233 4 RFC2 replication factor C (activator 1) 2, 40kDa 3927 494 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1061.[MT7]-LEVFAR.2b4_1.heavy 439.764 / 633.373 40464.0 29.96820068359375 45 15 10 10 10 4.9371946300604295 20.254417233451466 0.0 3 0.9585722100264303 6.042346770436799 40464.0 99.24964640920275 0.0 - - - - - - - 326.0 80 1 RFC2 replication factor C (activator 1) 2, 40kDa 3929 495 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1060.[MT7]-ALGTVNR.2y5_1.heavy 437.765 / 546.299 78475.0 18.691999435424805 50 20 10 10 10 4.59968094203317 21.740638374755964 0.0 3 0.9906081091441451 12.724635790398075 78475.0 208.16132742326016 0.0 - - - - - - - 207.0 156 1 PTTG2;PTTG1 pituitary tumor-transforming 2;pituitary tumor-transforming 1 3931 495 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1060.[MT7]-ALGTVNR.2b4_1.heavy 437.765 / 487.3 23130.0 18.691999435424805 50 20 10 10 10 4.59968094203317 21.740638374755964 0.0 3 0.9906081091441451 12.724635790398075 23130.0 31.24061805456263 0.0 - - - - - - - 344.3333333333333 46 6 PTTG2;PTTG1 pituitary tumor-transforming 2;pituitary tumor-transforming 1 3933 495 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1060.[MT7]-ALGTVNR.2y6_1.heavy 437.765 / 659.383 122463.0 18.691999435424805 50 20 10 10 10 4.59968094203317 21.740638374755964 0.0 3 0.9906081091441451 12.724635790398075 122463.0 595.0297787496784 0.0 - - - - - - - 310.0 244 6 PTTG2;PTTG1 pituitary tumor-transforming 2;pituitary tumor-transforming 1 3935 495 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1060.[MT7]-ALGTVNR.2b1_1.heavy 437.765 / 216.146 64226.0 18.691999435424805 50 20 10 10 10 4.59968094203317 21.740638374755964 0.0 3 0.9906081091441451 12.724635790398075 64226.0 96.9351251008878 0.0 - - - - - - - 1121.4285714285713 128 7 PTTG2;PTTG1 pituitary tumor-transforming 2;pituitary tumor-transforming 1 3937 496 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A929.[MT7]-WNSVFDQLTQVVK[MT7].3b6_1.heavy 618.012 / 893.427 23343.0 41.79215049743652 39 13 10 6 10 5.450719159294109 18.34620296470208 0.035701751708984375 3 0.927047843608186 4.541162439094912 23343.0 107.44229117117118 0.0 - - - - - - - 214.42857142857142 46 14 MAP2K4 mitogen-activated protein kinase kinase 4 3939 496 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A929.[MT7]-WNSVFDQLTQVVK[MT7].3b4_1.heavy 618.012 / 631.332 36514.0 41.79215049743652 39 13 10 6 10 5.450719159294109 18.34620296470208 0.035701751708984375 3 0.927047843608186 4.541162439094912 36514.0 105.8906 0.0 - - - - - - - 250.0 73 8 MAP2K4 mitogen-activated protein kinase kinase 4 3941 496 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A929.[MT7]-WNSVFDQLTQVVK[MT7].3b3_1.heavy 618.012 / 532.264 17340.0 41.79215049743652 39 13 10 6 10 5.450719159294109 18.34620296470208 0.035701751708984375 3 0.927047843608186 4.541162439094912 17340.0 147.58534822247398 0.0 - - - - - - - 222.33333333333334 34 12 MAP2K4 mitogen-activated protein kinase kinase 4 3943 496 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A929.[MT7]-WNSVFDQLTQVVK[MT7].3b7_1.heavy 618.012 / 1021.49 17674.0 41.79215049743652 39 13 10 6 10 5.450719159294109 18.34620296470208 0.035701751708984375 3 0.927047843608186 4.541162439094912 17674.0 48.296211688089116 0.0 - - - - - - - 167.0 35 4 MAP2K4 mitogen-activated protein kinase kinase 4 3945 497 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1059.[MT7]-GLGLPK[MT7].2y4_1.heavy 436.794 / 558.373 32876.0 25.387699127197266 46 16 10 10 10 3.373425251382893 29.64346103682193 0.0 3 0.9629159222272441 6.388770558689581 32876.0 127.49146851104987 0.0 - - - - - - - 296.0 65 3 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 3947 497 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1059.[MT7]-GLGLPK[MT7].2y5_1.heavy 436.794 / 671.457 22213.0 25.387699127197266 46 16 10 10 10 3.373425251382893 29.64346103682193 0.0 3 0.9629159222272441 6.388770558689581 22213.0 104.3110472972973 0.0 - - - - - - - 296.0 44 5 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 3949 497 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1059.[MT7]-GLGLPK[MT7].2b4_1.heavy 436.794 / 485.32 80264.0 25.387699127197266 46 16 10 10 10 3.373425251382893 29.64346103682193 0.0 3 0.9629159222272441 6.388770558689581 80264.0 86.33442848373235 0.0 - - - - - - - 1269.5714285714287 160 7 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 3951 497 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1059.[MT7]-GLGLPK[MT7].2y3_1.heavy 436.794 / 501.352 12439.0 25.387699127197266 46 16 10 10 10 3.373425251382893 29.64346103682193 0.0 3 0.9629159222272441 6.388770558689581 12439.0 33.88363481591828 1.0 - - - - - - - 703.375 138 8 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 3953 498 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A925.[MT7]-SFEC[CAM]LLGLNSNIGIR.3b4_1.heavy 612.997 / 668.283 29710.0 40.48400115966797 48 18 10 10 10 6.497555568438832 15.390403198048677 0.0 3 0.9868501329525065 10.750400099210994 29710.0 69.65447309362739 0.0 - - - - - - - 267.77777777777777 59 9 ORC6 origin recognition complex, subunit 6 3955 498 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A925.[MT7]-SFEC[CAM]LLGLNSNIGIR.3b5_1.heavy 612.997 / 781.367 19914.0 40.48400115966797 48 18 10 10 10 6.497555568438832 15.390403198048677 0.0 3 0.9868501329525065 10.750400099210994 19914.0 69.50470921967468 0.0 - - - - - - - 294.5 39 6 ORC6 origin recognition complex, subunit 6 3957 498 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A925.[MT7]-SFEC[CAM]LLGLNSNIGIR.3b3_1.heavy 612.997 / 508.252 16381.0 40.48400115966797 48 18 10 10 10 6.497555568438832 15.390403198048677 0.0 3 0.9868501329525065 10.750400099210994 16381.0 43.99486540364141 0.0 - - - - - - - 281.25 32 8 ORC6 origin recognition complex, subunit 6 3959 498 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A925.[MT7]-SFEC[CAM]LLGLNSNIGIR.3y9_1.heavy 612.997 / 943.532 21198.0 40.48400115966797 48 18 10 10 10 6.497555568438832 15.390403198048677 0.0 3 0.9868501329525065 10.750400099210994 21198.0 143.80847794668534 0.0 - - - - - - - 261.125 42 8 ORC6 origin recognition complex, subunit 6 3961 499 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1056.[MT7]-EIADK[MT7].2y4_1.heavy 432.257 / 590.363 24431.0 17.094200134277344 40 16 6 10 8 1.5533114385556264 42.00290704642613 0.0 4 0.9656567061810802 6.64034388854031 24431.0 10.151185522767932 1.0 - - - - - - - 401.0 142 2 E2F4;TAX1BP1 E2F transcription factor 4, p107/p130-binding;Tax1 (human T-cell leukemia virus type I) binding protein 1 3963 499 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1056.[MT7]-EIADK[MT7].2b4_1.heavy 432.257 / 573.3 25433.0 17.094200134277344 40 16 6 10 8 1.5533114385556264 42.00290704642613 0.0 4 0.9656567061810802 6.64034388854031 25433.0 24.50371533805547 1.0 - - - - - - - 200.0 50 1 E2F4;TAX1BP1 E2F transcription factor 4, p107/p130-binding;Tax1 (human T-cell leukemia virus type I) binding protein 1 3965 499 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1056.[MT7]-EIADK[MT7].2y3_1.heavy 432.257 / 477.279 14619.0 17.094200134277344 40 16 6 10 8 1.5533114385556264 42.00290704642613 0.0 4 0.9656567061810802 6.64034388854031 14619.0 29.21331117074508 0.0 - - - - - - - 300.5 29 2 E2F4;TAX1BP1 E2F transcription factor 4, p107/p130-binding;Tax1 (human T-cell leukemia virus type I) binding protein 1 3967 499 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1056.[MT7]-EIADK[MT7].2y1_1.heavy 432.257 / 291.215 49063.0 17.094200134277344 40 16 6 10 8 1.5533114385556264 42.00290704642613 0.0 4 0.9656567061810802 6.64034388854031 49063.0 9.87925499358764 2.0 - - - - - - - 1202.0 98 1 E2F4;TAX1BP1 E2F transcription factor 4, p107/p130-binding;Tax1 (human T-cell leukemia virus type I) binding protein 1 3969 500 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A923.[MT7]-SEDELDQASTPTDVR.3b6_1.heavy 602.954 / 833.365 12331.0 22.739900588989258 42 16 8 10 8 3.0357067573665835 26.06108609062289 0.0 4 0.9674054871764733 6.817158237302225 12331.0 30.00369901547117 0.0 - - - - - - - 346.38461538461536 24 13 CCND2 cyclin D2 3971 500 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A923.[MT7]-SEDELDQASTPTDVR.3b4_1.heavy 602.954 / 605.253 19919.0 22.739900588989258 42 16 8 10 8 3.0357067573665835 26.06108609062289 0.0 4 0.9674054871764733 6.817158237302225 19919.0 20.78627219155834 1.0 - - - - - - - 379.2 49 5 CCND2 cyclin D2 3973 500 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A923.[MT7]-SEDELDQASTPTDVR.3b5_1.heavy 602.954 / 718.338 12331.0 22.739900588989258 42 16 8 10 8 3.0357067573665835 26.06108609062289 0.0 4 0.9674054871764733 6.817158237302225 12331.0 29.192316039238875 1.0 - - - - - - - 379.2 52 5 CCND2 cyclin D2 3975 500 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A923.[MT7]-SEDELDQASTPTDVR.3y5_1.heavy 602.954 / 587.315 20393.0 22.739900588989258 42 16 8 10 8 3.0357067573665835 26.06108609062289 0.0 4 0.9674054871764733 6.817158237302225 20393.0 16.769034631742763 0.0 - - - - - - - 1245.25 40 8 CCND2 cyclin D2 3977 501 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A922.[MT7]-FRFGPLTPELMVPR.3y7_1.heavy 602.007 / 841.46 26683.0 38.67129898071289 43 17 10 6 10 4.126096672785656 24.2359808628737 0.0316009521484375 3 0.9768249730529648 8.091143938157625 26683.0 188.97263233521832 0.0 - - - - - - - 257.1 53 10 RFC5 replication factor C (activator 1) 5, 36.5kDa 3979 501 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A922.[MT7]-FRFGPLTPELMVPR.3b6_1.heavy 602.007 / 862.506 5947.0 38.67129898071289 43 17 10 6 10 4.126096672785656 24.2359808628737 0.0316009521484375 3 0.9768249730529648 8.091143938157625 5947.0 11.10435684647303 1.0 - - - - - - - 263.09090909090907 11 11 RFC5 replication factor C (activator 1) 5, 36.5kDa 3981 501 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A922.[MT7]-FRFGPLTPELMVPR.3y6_1.heavy 602.007 / 744.407 10448.0 38.67129898071289 43 17 10 6 10 4.126096672785656 24.2359808628737 0.0316009521484375 3 0.9768249730529648 8.091143938157625 10448.0 27.80545652374366 0.0 - - - - - - - 803.5714285714286 20 7 RFC5 replication factor C (activator 1) 5, 36.5kDa 3983 501 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A922.[MT7]-FRFGPLTPELMVPR.3y5_1.heavy 602.007 / 615.365 21218.0 38.67129898071289 43 17 10 6 10 4.126096672785656 24.2359808628737 0.0316009521484375 3 0.9768249730529648 8.091143938157625 21218.0 53.35057027475748 0.0 - - - - - - - 335.90909090909093 42 11 RFC5 replication factor C (activator 1) 5, 36.5kDa 3985 502 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1058.[MT7]-LIPLK[MT7].2b3_1.heavy 436.315 / 468.33 N/A 30.225900650024414 50 20 10 10 10 4.5931064984319026 21.77175731373532 0.0 3 0.9957274488731647 18.87400151366048 1602.0 0.29995541685242977 4.0 - - - - - - - 320.0 6 2 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 3987 502 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1058.[MT7]-LIPLK[MT7].2y4_1.heavy 436.315 / 614.436 105412.0 30.225900650024414 50 20 10 10 10 4.5931064984319026 21.77175731373532 0.0 3 0.9957274488731647 18.87400151366048 105412.0 49.94296155758512 0.0 - - - - - - - 320.0 210 1 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 3989 502 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1058.[MT7]-LIPLK[MT7].2y3_1.heavy 436.315 / 501.352 472272.0 30.225900650024414 50 20 10 10 10 4.5931064984319026 21.77175731373532 0.0 3 0.9957274488731647 18.87400151366048 472272.0 136.00402612708808 0.0 - - - - - - - 2884.0 944 1 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 3991 502 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1058.[MT7]-LIPLK[MT7].2b1_1.heavy 436.315 / 258.193 147705.0 30.225900650024414 50 20 10 10 10 4.5931064984319026 21.77175731373532 0.0 3 0.9957274488731647 18.87400151366048 147705.0 278.57142354071414 0.0 - - - - - - - 320.0 295 1 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) 3993 503 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1491.[MT7]-DLDNAIEAVDEFAFLEGTLD.3b6_1.heavy 781.045 / 786.411 5864.0 51.33300018310547 47 17 10 10 10 1.8263631322863012 42.04658726266728 0.0 3 0.9740637290540671 7.646548404868152 5864.0 46.939470437616386 0.0 - - - - - - - 200.66666666666666 11 18 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 3995 503 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1491.[MT7]-DLDNAIEAVDEFAFLEGTLD.3b4_1.heavy 781.045 / 602.29 4174.0 51.33300018310547 47 17 10 10 10 1.8263631322863012 42.04658726266728 0.0 3 0.9740637290540671 7.646548404868152 4174.0 16.89712398461289 0.0 - - - - - - - 156.3684210526316 8 19 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 3997 503 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1491.[MT7]-DLDNAIEAVDEFAFLEGTLD.3b5_1.heavy 781.045 / 673.327 16414.0 51.33300018310547 47 17 10 10 10 1.8263631322863012 42.04658726266728 0.0 3 0.9740637290540671 7.646548404868152 16414.0 104.59577468513437 0.0 - - - - - - - 231.88235294117646 32 17 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 3999 503 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1491.[MT7]-DLDNAIEAVDEFAFLEGTLD.3b7_1.heavy 781.045 / 915.454 3764.0 51.33300018310547 47 17 10 10 10 1.8263631322863012 42.04658726266728 0.0 3 0.9740637290540671 7.646548404868152 3764.0 33.901792074022346 0.0 - - - - - - - 170.35294117647058 7 17 POLE4 polymerase (DNA-directed), epsilon 4 (p12 subunit) 4001 504 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A920.[MT7]-NVTELNEPLSNEER.2y9_1.heavy 894.448 / 1087.5 19906.0 26.12619972229004 41 11 10 10 10 0.9284705835710916 66.30879611504848 0.0 3 0.8551740838459688 3.202969500098891 19906.0 49.60498392282958 0.0 - - - - - - - 311.0 39 1 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 4003 504 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A920.[MT7]-NVTELNEPLSNEER.2b4_1.heavy 894.448 / 588.311 20528.0 26.12619972229004 41 11 10 10 10 0.9284705835710916 66.30879611504848 0.0 3 0.8551740838459688 3.202969500098891 20528.0 96.03935691318327 0.0 - - - - - - - 311.0 41 3 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 4005 504 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A920.[MT7]-NVTELNEPLSNEER.2y10_1.heavy 894.448 / 1200.59 6532.0 26.12619972229004 41 11 10 10 10 0.9284705835710916 66.30879611504848 0.0 3 0.8551740838459688 3.202969500098891 6532.0 27.199163987138263 0.0 - - - - - - - 311.0 13 2 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 4007 504 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A920.[MT7]-NVTELNEPLSNEER.2y7_1.heavy 894.448 / 844.416 16485.0 26.12619972229004 41 11 10 10 10 0.9284705835710916 66.30879611504848 0.0 3 0.8551740838459688 3.202969500098891 16485.0 18.44623794212219 0.0 - - - - - - - 311.0 32 4 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 4009 505 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1492.[MT7]-NDVLDSLGISPDLLPEDFVR.3y6_1.heavy 786.748 / 762.378 58462.0 45.15739822387695 45 15 10 10 10 3.601046123654022 27.76970818094628 0.0 3 0.9575038126425954 5.965368446045901 58462.0 105.33264890815339 0.0 - - - - - - - 142.0 116 2 SAE1 SUMO1 activating enzyme subunit 1 4011 505 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1492.[MT7]-NDVLDSLGISPDLLPEDFVR.3b5_1.heavy 786.748 / 701.359 17170.0 45.15739822387695 45 15 10 10 10 3.601046123654022 27.76970818094628 0.0 3 0.9575038126425954 5.965368446045901 17170.0 52.50870398696836 0.0 - - - - - - - 312.4 34 10 SAE1 SUMO1 activating enzyme subunit 1 4013 505 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1492.[MT7]-NDVLDSLGISPDLLPEDFVR.3b8_1.heavy 786.748 / 958.496 22420.0 45.15739822387695 45 15 10 10 10 3.601046123654022 27.76970818094628 0.0 3 0.9575038126425954 5.965368446045901 22420.0 76.41494573076291 1.0 - - - - - - - 248.5 55 12 SAE1 SUMO1 activating enzyme subunit 1 4015 505 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1492.[MT7]-NDVLDSLGISPDLLPEDFVR.3y10_1.heavy 786.748 / 1200.63 18021.0 45.15739822387695 45 15 10 10 10 3.601046123654022 27.76970818094628 0.0 3 0.9575038126425954 5.965368446045901 18021.0 87.5668309859155 0.0 - - - - - - - 252.44444444444446 36 9 SAE1 SUMO1 activating enzyme subunit 1 4017 506 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1156.[MT7]-FSADAEK[MT7].2y4_1.heavy 528.284 / 606.321 6933.0 20.117599487304688 47 17 10 10 10 4.137668395060785 24.16820065121022 0.0 3 0.9790613165335398 8.513868965861722 6933.0 38.131499999999996 0.0 - - - - - - - 288.75 13 8 STAG3 stromal antigen 3 4019 506 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1156.[MT7]-FSADAEK[MT7].2y5_1.heavy 528.284 / 677.359 6302.0 20.117599487304688 47 17 10 10 10 4.137668395060785 24.16820065121022 0.0 3 0.9790613165335398 8.513868965861722 6302.0 15.604952380952382 0.0 - - - - - - - 305.45454545454544 12 11 STAG3 stromal antigen 3 4021 506 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1156.[MT7]-FSADAEK[MT7].2b4_1.heavy 528.284 / 565.274 20168.0 20.117599487304688 47 17 10 10 10 4.137668395060785 24.16820065121022 0.0 3 0.9790613165335398 8.513868965861722 20168.0 42.897015873015874 0.0 - - - - - - - 1170.142857142857 40 7 STAG3 stromal antigen 3 4023 506 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1156.[MT7]-FSADAEK[MT7].2y6_1.heavy 528.284 / 764.391 21638.0 20.117599487304688 47 17 10 10 10 4.137668395060785 24.16820065121022 0.0 3 0.9790613165335398 8.513868965861722 21638.0 54.9536507936508 0.0 - - - - - - - 323.0769230769231 43 13 STAG3 stromal antigen 3 4025 507 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1493.[MT7]-IIILDEADSMTDGAQQALRR.3y8_1.heavy 787.417 / 899.517 6241.0 37.28990173339844 46 16 10 10 10 1.7394396309898745 38.3265193450423 0.0 3 0.9612255230714222 6.247064891388089 6241.0 40.63283541529695 0.0 - - - - - - - 637.2222222222222 12 9 RFC2 replication factor C (activator 1) 2, 40kDa 4027 507 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1493.[MT7]-IIILDEADSMTDGAQQALRR.3y12_2.heavy 787.417 / 667.336 12313.0 37.28990173339844 46 16 10 10 10 1.7394396309898745 38.3265193450423 0.0 3 0.9612255230714222 6.247064891388089 12313.0 15.123692597178591 0.0 - - - - - - - 337.0 24 6 RFC2 replication factor C (activator 1) 2, 40kDa 4029 507 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1493.[MT7]-IIILDEADSMTDGAQQALRR.3y19_2.heavy 787.417 / 1052.03 14169.0 37.28990173339844 46 16 10 10 10 1.7394396309898745 38.3265193450423 0.0 3 0.9612255230714222 6.247064891388089 14169.0 54.71519692473698 0.0 - - - - - - - 214.8181818181818 28 11 RFC2 replication factor C (activator 1) 2, 40kDa 4031 507 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1493.[MT7]-IIILDEADSMTDGAQQALRR.3y16_2.heavy 787.417 / 882.403 11976.0 37.28990173339844 46 16 10 10 10 1.7394396309898745 38.3265193450423 0.0 3 0.9612255230714222 6.247064891388089 11976.0 44.402938344873064 0.0 - - - - - - - 199.54545454545453 23 11 RFC2 replication factor C (activator 1) 2, 40kDa 4033 508 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1494.[MT7]-AEDNADTLALVFEAPNQEK[MT7].3b9_1.heavy 788.404 / 1045.49 31215.0 36.66960144042969 39 13 10 6 10 1.5799331823045317 50.60681868434601 0.035400390625 3 0.9002158227114666 3.8739345287464753 31215.0 26.674470540206286 0.0 - - - - - - - 275.8 62 5 PCNA proliferating cell nuclear antigen 4035 508 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1494.[MT7]-AEDNADTLALVFEAPNQEK[MT7].3b6_1.heavy 788.404 / 760.323 30008.0 36.66960144042969 39 13 10 6 10 1.5799331823045317 50.60681868434601 0.035400390625 3 0.9002158227114666 3.8739345287464753 30008.0 25.626230890880336 0.0 - - - - - - - 708.8888888888889 60 9 PCNA proliferating cell nuclear antigen 4037 508 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1494.[MT7]-AEDNADTLALVFEAPNQEK[MT7].3y5_1.heavy 788.404 / 759.412 75883.0 36.66960144042969 39 13 10 6 10 1.5799331823045317 50.60681868434601 0.035400390625 3 0.9002158227114666 3.8739345287464753 75883.0 58.468260149130074 0.0 - - - - - - - 1144.6363636363637 151 11 PCNA proliferating cell nuclear antigen 4039 508 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1494.[MT7]-AEDNADTLALVFEAPNQEK[MT7].3b7_1.heavy 788.404 / 861.371 31733.0 36.66960144042969 39 13 10 6 10 1.5799331823045317 50.60681868434601 0.035400390625 3 0.9002158227114666 3.8739345287464753 31733.0 44.15658249912845 0.0 - - - - - - - 708.7777777777778 63 9 PCNA proliferating cell nuclear antigen 4041 509 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1157.[MT7]-K[MT7]LPQQR.3y3_1.heavy 353.229 / 431.236 31520.0 15.510600090026855 46 16 10 10 10 2.868961359063087 34.85581974957546 0.0 3 0.9685497115414947 6.9407309371792705 31520.0 73.24818181818182 0.0 - - - - - - - 264.0 63 6 CCND2 cyclin D2 4043 509 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1157.[MT7]-K[MT7]LPQQR.3b1_2.heavy 353.229 / 209.157 85930.0 15.510600090026855 46 16 10 10 10 2.868961359063087 34.85581974957546 0.0 3 0.9685497115414947 6.9407309371792705 85930.0 102.00241355712433 0.0 - - - - - - - 293.3333333333333 171 3 CCND2 cyclin D2 4045 509 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1157.[MT7]-K[MT7]LPQQR.3y4_1.heavy 353.229 / 528.289 128015.0 15.510600090026855 46 16 10 10 10 2.868961359063087 34.85581974957546 0.0 3 0.9685497115414947 6.9407309371792705 128015.0 187.07684722387702 0.0 - - - - - - - 682.0 256 8 CCND2 cyclin D2 4047 509 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1157.[MT7]-K[MT7]LPQQR.3y5_1.heavy 353.229 / 641.373 30287.0 15.510600090026855 46 16 10 10 10 2.868961359063087 34.85581974957546 0.0 3 0.9685497115414947 6.9407309371792705 30287.0 200.651375 0.0 - - - - - - - 308.0 60 8 CCND2 cyclin D2 4049 510 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1286.[MT7]-ISVPIDLQK[MT7].2y4_1.heavy 650.908 / 647.385 7628.0 32.0635986328125 46 16 10 10 10 1.5670357332033655 39.34768452068755 0.0 3 0.9698788087482583 7.093002375884668 7628.0 15.323504424778761 1.0 - - - - - - - 283.0 26 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 4051 510 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1286.[MT7]-ISVPIDLQK[MT7].2y8_1.heavy 650.908 / 1043.62 22602.0 32.0635986328125 46 16 10 10 10 1.5670357332033655 39.34768452068755 0.0 3 0.9698788087482583 7.093002375884668 22602.0 26.733372486235737 1.0 - - - - - - - 283.0 45 3 PRIM1 primase, DNA, polypeptide 1 (49kDa) 4053 510 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1286.[MT7]-ISVPIDLQK[MT7].2y3_1.heavy 650.908 / 532.357 18929.0 32.0635986328125 46 16 10 10 10 1.5670357332033655 39.34768452068755 0.0 3 0.9698788087482583 7.093002375884668 18929.0 15.969598820058998 0.0 - - - - - - - 726.7142857142857 37 7 PRIM1 primase, DNA, polypeptide 1 (49kDa) 4055 510 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1286.[MT7]-ISVPIDLQK[MT7].2y6_1.heavy 650.908 / 857.521 68371.0 32.0635986328125 46 16 10 10 10 1.5670357332033655 39.34768452068755 0.0 3 0.9698788087482583 7.093002375884668 68371.0 16.434944826737294 1.0 - - - - - - - 283.0 170 1 PRIM1 primase, DNA, polypeptide 1 (49kDa) 4057 511 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1287.[MT7]-SIDTFFGVK[MT7].2y4_1.heavy 651.371 / 594.373 20185.0 35.92154884338379 42 16 10 6 10 2.9311247325008063 26.573528144699093 0.037700653076171875 3 0.9680151759151322 6.882179075047628 20185.0 39.97194264429917 0.0 - - - - - - - 707.1111111111111 40 9 RNASEH2B ribonuclease H2, subunit B 4059 511 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1287.[MT7]-SIDTFFGVK[MT7].2y5_1.heavy 651.371 / 741.442 11275.0 35.92154884338379 42 16 10 6 10 2.9311247325008063 26.573528144699093 0.037700653076171875 3 0.9680151759151322 6.882179075047628 11275.0 10.779632057241141 0.0 - - - - - - - 623.7142857142857 22 7 RNASEH2B ribonuclease H2, subunit B 4061 511 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1287.[MT7]-SIDTFFGVK[MT7].2y6_1.heavy 651.371 / 842.489 30551.0 35.92154884338379 42 16 10 6 10 2.9311247325008063 26.573528144699093 0.037700653076171875 3 0.9680151759151322 6.882179075047628 30551.0 59.4838168977301 0.0 - - - - - - - 727.4444444444445 61 9 RNASEH2B ribonuclease H2, subunit B 4063 511 20120510_pMRM_Cell_cycle_and_ub_set03_01 20120510_pMRM_Cell_cycle_and_ub_set03_01 A1287.[MT7]-SIDTFFGVK[MT7].2b5_1.heavy 651.371 / 708.369 9456.0 35.92154884338379 42 16 10 6 10 2.9311247325008063 26.573528144699093 0.037700653076171875 3 0.9680151759151322 6.882179075047628 9456.0 35.736753480357336 0.0 - - - - - - - 626.5555555555555 18 9 RNASEH2B ribonuclease H2, subunit B