Raw file Experiment Enzyme Enzyme mode Enzyme first search Enzyme mode first search Use enzyme first search Variable modifications Variable modifications first search Use variable modifications first search Multiplicity Max. missed cleavages Labels0 LC-MS run type Time-dependent recalibration MS MS/MS MS/MS Submitted MS/MS Submitted (SIL) MS/MS Submitted (ISO) MS/MS Submitted (PEAK) MS/MS Identified MS/MS Identified (SIL) MS/MS Identified (ISO) MS/MS Identified (PEAK) MS/MS Identified [%] MS/MS Identified (SIL) [%] MS/MS Identified (ISO) [%] MS/MS Identified (PEAK) [%] Peptide Sequences Identified Peaks Peaks Sequenced Peaks Sequenced [%] Peaks Repeatedly Sequenced Peaks Repeatedly Sequenced [%] Isotope Patterns Isotope Patterns Sequenced Isotope Patterns Sequenced (z>1) Isotope Patterns Sequenced [%] Isotope Patterns Sequenced (z>1) [%] Isotope Patterns Repeatedly Sequenced Isotope Patterns Repeatedly Sequenced [%] Recalibrated Av. Absolute Mass Deviation [ppm] Mass Standard Deviation [ppm] Av. Absolute Mass Deviation [mDa] Mass Standard Deviation [mDa] Label free norm param Miao_Sh-c_Flag_mass3_141226_01 Sh-c-flag-1 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 7054 24244 37748 10722 0 27026 1760 1376 0 384 4.66 12.83 NaN 1.42 904 5362727 19417 0.36 2634 13.57 309980 7083 5994 2.28 3.3 1915 27.04 + 2.5383 3.2288 1.4987 1.9377 Miao_Sh-c_Flag_mass3_141226_02 Sh-c-flag-2 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 6552 25209 39429 10973 0 28456 1971 1397 0 574 5 12.73 NaN 2.02 898 5288238 19478 0.37 3032 15.57 293506 6752 5652 2.3 3.24 2099 31.09 + 2.5975 3.2784 1.5512 1.9836 Miao_Sh-c_Flag_mass3_141226_03 Sh-c-flag-3 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 6543 25334 39826 10832 0 28994 1865 1285 0 580 4.68 11.86 NaN 2 859 5258710 19799 0.38 2928 14.79 289092 6846 5639 2.37 3.29 2044 29.86 + 2.7639 3.5465 1.6134 2.0623 Miao_Sh-c_proteinG_mass3_141226_01 Sh-c-G-1 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 6781 28380 43844 12902 0 30942 2599 1936 0 663 5.93 15.01 NaN 2.14 1107 5218172 22727 0.44 3372 14.84 281526 8458 7190 3 4.4 2548 30.13 + 2.1915 2.8587 1.3158 1.7245 Miao_Sh-c_proteinG_mass3_141226_02 Sh-c-G-2 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 6152 29714 46724 12690 0 34034 1809 1393 0 416 3.87 10.98 NaN 1.22 850 4979408 24528 0.49 3481 14.19 272987 8671 7119 3.18 4.56 2569 29.63 + 2.4325 3.1404 1.4135 1.8406 Miao_Sh-c_proteinG_mass3_141226_03 Sh-c-G-3 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 5583 35090 54096 16060 0 38036 3095 2229 0 866 5.72 13.88 NaN 2.28 1179 3478135 26808 0.77 4757 17.74 208827 9934 8065 4.76 6.89 3315 33.37 + 2.8816 3.6018 1.6067 2.0109 Miao_Sh-H9_Flag_mass3_141226_01 Sh-H9-Flag-1 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 7083 25553 39614 11472 0 28142 2168 1505 0 663 5.47 13.12 NaN 2.36 1135 5223443 20254 0.39 2944 14.54 313744 7568 6408 2.41 3.51 2100 27.75 + 2.5182 3.2131 1.4873 1.9104 Miao_Sh-H9_Flag_mass3_141226_02 Sh-H9-Flag-2 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 6468 27263 42421 12087 0 30334 2314 1592 0 722 5.45 13.17 NaN 2.38 1073 5187493 20884 0.4 3372 16.15 303536 7530 6316 2.48 3.46 2310 30.68 + 2.6697 3.4111 1.5824 2.0399 Miao_Sh-H9_Flag_mass3_141226_03 Sh-H9-Flag-3 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 6561 27578 43172 11962 0 31210 2172 1415 0 757 5.03 11.83 NaN 2.43 1013 5204102 21198 0.41 3396 16.02 299067 7514 6265 2.51 3.49 2249 29.93 + 2.6806 3.3904 1.5782 2.0024 Miao_Sh-H9_proteinG_mass3_141226_01 Sh-H9-G-1 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 5896 35867 53521 18191 0 35330 4349 3341 0 1008 8.13 18.37 NaN 2.85 1527 3339522 26268 0.79 5081 19.34 216170 10883 9314 5.03 7.65 3732 34.29 + 2.2565 2.9473 1.3128 1.7288 Miao_Sh-H9_proteinG_mass3_141226_02 Sh-H9-G-2 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 5748 36026 54241 17799 0 36442 4501 3301 0 1200 8.3 18.55 NaN 3.29 1223 3593834 24520 0.68 5346 21.8 214443 9570 8080 4.46 6.7 3606 37.68 + 2.2714 2.9601 1.3305 1.7617 Miao_Sh-H9_proteinG_mass3_141226_03 Sh-H9-G-3 Trypsin/P Specific False Acetyl (Protein N-term);Oxidation (M);QQTGG (K);GlyGly (K) False 1 2 Standard 5654 35407 53973 16829 0 37144 4292 2960 0 1332 7.95 17.59 NaN 3.59 1238 3408262 24706 0.72 5129 20.76 192277 9303 7771 4.84 7.27 3464 37.24 + 2.3386 3.0812 1.3685 1.8225 Sh-c-flag-1 904 Sh-c-flag-2 898 Sh-c-flag-3 859 Sh-c-G-1 1107 Sh-c-G-2 850 Sh-c-G-3 1179 Sh-H9-Flag-1 1135 Sh-H9-Flag-2 1073 Sh-H9-Flag-3 1013 Sh-H9-G-1 1527 Sh-H9-G-2 1223 Sh-H9-G-3 1238 Total 76075 355665 548609 162519 0 386090 32895 23730 0 9165 6 14.6 NaN 2.37 3136 55542046 3195155 100112 83813 3.13 4.51 31951 31.92 2.4788 3.1954 1.4501 1.8832