Sequence N-term cleavage window C-term cleavage window Amino acid before First amino acid Second amino acid Second last amino acid Last amino acid Amino acid after A Count R Count N Count D Count C Count Q Count E Count G Count H Count I Count L Count K Count M Count F Count P Count S Count T Count W Count Y Count V Count U Count O Count Length Missed cleavages Mass Proteins Leading razor protein Start position End position Gene names Protein names Unique (Groups) Unique (Proteins) Charges PEP Score Experiment BAZ1AB_exp1 Experiment BAZ1AB_exp2 Ratio H/L Ratio H/L normalized Ratio H/L variability [%] Ratio H/L count Ratio H/L iso-count Ratio H/L type Ratio H/L BAZ1AB_exp1 Ratio H/L normalized BAZ1AB_exp1 Ratio H/L variability [%] BAZ1AB_exp1 Ratio H/L count BAZ1AB_exp1 Ratio H/L iso-count BAZ1AB_exp1 Ratio H/L type BAZ1AB_exp1 Ratio H/L BAZ1AB_exp2 Ratio H/L normalized BAZ1AB_exp2 Ratio H/L variability [%] BAZ1AB_exp2 Ratio H/L count BAZ1AB_exp2 Ratio H/L iso-count BAZ1AB_exp2 Ratio H/L type BAZ1AB_exp2 Intensity Intensity L Intensity H Intensity BAZ1AB_exp1 Intensity L BAZ1AB_exp1 Intensity H BAZ1AB_exp1 Intensity BAZ1AB_exp2 Intensity L BAZ1AB_exp2 Intensity H BAZ1AB_exp2 Reverse Potential contaminant id Protein group IDs Mod. peptide IDs Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs MS/MS Count AAAAAAAAAPAAAATAPTTAATTAATAAQ GLKKRDKKNKTKKTKAAAAAAAAAPAAAAT TAPTTAATTAATAAQ_______________ K A A A Q - 20 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 6 0 0 0 0 0 29 0 2367.203 P37108;H0YLW0 P37108 108 136 SRP14 Signal recognition particle 14 kDa protein yes no 2 3.9029E-06 53.995 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 1549 0 0 0 0 1 AAAAAAAAAVSR TTSSRVLRGGRDRGRAAAAAAAAAVSRRRK RGRAAAAAAAAAVSRRRKAEYPRRRRSSPS R A A S R R 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 12 0 999.54614 A0A0A6YYC7;A0A024R4Z4;A0A024R4Z1;Q96JP5 A0A0A6YYC7 59 70 ZFP91-CNTF;hCG_2042749;ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 2 0.0017288 69.275 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1 166 1 1 1 1 1 AAAAAAALQAK TILRQARNHKLRVDKAAAAAAALQAKSDEK RVDKAAAAAAALQAKSDEKAAVAGKKPVVG K A A A K S 8 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 11 0 955.54508 P36578;Q59GY2;B4DMJ6;H3BM89;H3BU31 P36578 354 364 RPL4 60S ribosomal protein L4 yes no 1;2 1.8704E-12 173.68 3 2 1.0199 1.0418 11.301 5 Median 0.92616 1.1026 4.5293 3 0 Median 1.0634 0.89753 0.51396 2 0 Median 1451700000 756600000 695110000 1340900000 702160000 638760000 110790000 54442000 56344000 2 1548 2 2;3;4;5;6 2;3;4;5;6;7;8;9;10 5 9 AAAAAAAPSGGGGGGEEERLEEK ______________________________ SGGGGGGEEERLEEKSEDQDLQGLKDKPLK M A A E K S 7 1 0 0 0 0 5 6 0 0 1 1 0 0 1 1 0 0 0 0 0 0 23 1 2083.977 A0A140VKC4;B5MCB4 A0A140VKC4 2 24 MECP2 yes no 2 6.6607E-08 59.185 2 0.38808 0.43005 26.268 2 Median 0.38808 0.43005 26.268 2 0 Median NaN NaN NaN 0 0 Median 29279000 18271000 11008000 29279000 18271000 11008000 0 0 0 3 623 3 7;8 11;12;13 13 3 AAAAAATAPPSPGPAQPGPR PPAPVAAAAPARAPRAAAAAATAPPSPGPA ATAPPSPGPAQPGPRAQRAAPLAAPPPAPA R A A P R A 8 1 0 0 0 1 0 2 0 0 0 0 0 0 6 1 1 0 0 0 0 0 20 0 1754.9064 Q6SPF0 Q6SPF0 151 170 SAMD1 Atherin yes yes 2 8.6653E-24 134.99 2 1 0.86786 0.94635 23.347 3 Median 0.79093 0.84019 16.828 2 0 Median 1.4317 1.1898 NaN 1 0 Median 60456000 32279000 28177000 52836000 29150000 23686000 7619800 3128600 4491200 4 1861 4 9;10;11 14;15;16;17 16 4 AAAAPFQTSQASASAPR GRPPIATFSANPEAKAAAAPFQTSQASASA AAPFQTSQASASAPRHQPASASSTAASPAH K A A P R H 7 1 0 0 0 2 0 0 0 0 0 0 0 1 2 3 1 0 0 0 0 0 17 0 1630.8063 Q96L91 Q96L91 1519 1535 EP400 E1A-binding protein p400 yes yes 2 1.2205E-08 93.011 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4818600 4818600 0 4818600 4818600 0 0 0 0 5 1977 5 12;13 18;19 19 2 AAAASAAEAGIATTGTEDSDDALLK SMEEQRQRQEEEARRAAAASAAEAGIATTG IATTGTEDSDDALLKMTISQQEFGRTGLPD R A A L K M 9 0 0 3 0 0 2 2 0 1 2 1 0 0 0 2 3 0 0 0 0 0 25 0 2319.1078 P55036;H0Y3Y9 P55036 238 262 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 2 0.00053163 45.723 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6 1612 6 14 20 20 1 AAADGGGPGGASVGTEEDGGGVGHR ______________________________ ASVGTEEDGGGVGHRTVYLFDRREKESELG M A A H R T 4 1 0 2 0 0 2 10 1 0 0 0 0 0 1 1 1 0 0 2 0 0 25 0 2136.9421 A6NHR9 A6NHR9 2 26 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 3.8902E-27 118.47 2 0.9904 1.0181 6.3297 2 Median 0.9904 1.0181 6.3297 2 0 Median NaN NaN NaN 0 0 Median 34442000 17580000 16862000 34442000 17580000 16862000 0 0 0 7 684 7 15;16 21;22;23;24;25;26 26 6 AAADTLQGPMQAAYR SKLLKSKNLTDAIARAAADTLQGPMQAAYR AAADTLQGPMQAAYREAFQSVVLPAFEKSC R A A Y R E 5 1 0 1 0 2 0 1 0 0 1 0 1 0 1 0 1 0 1 0 0 0 15 0 1562.7511 Q6P2E9;I3L2F4 Q6P2E9 1101 1115 EDC4 Enhancer of mRNA-decapping protein 4 yes no 2 0.0010895 60.167 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3437000 0 3437000 3437000 0 3437000 0 0 0 8 1853 8 17 27 27 1703 1 AAAEALSFTK ESNDGWTSQSSGELKAAAEALSFTKCSSAI SGELKAAAEALSFTKCSSAISKALETLNSC K A A T K C 4 0 0 0 0 0 1 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1007.5288 Q96QE3 Q96QE3 1710 1719 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 2 0.0045944 64.654 2 1.5797 1.6382 NaN 1 Median 1.5797 1.6382 NaN 1 0 Median NaN NaN NaN 0 0 Median 11260000 3392500 7867000 11260000 3392500 7867000 0 0 0 9 1984 9 18;19 28;29;30 28 3 AAAEELQEAAGAGDGATENGVQPPK GDKSSSSGKKSLKRKAAAEELQEAAGAGDG GAGDGATENGVQPPKAAAFPPGFSISEIKN K A A P K A 7 0 1 1 0 2 4 4 0 0 1 1 0 0 2 0 1 0 0 1 0 0 25 0 2380.1143 Q9H9Y2;X6R7Q1 Q9H9Y2 20 44 RPF1 Ribosome production factor 1 yes no 2 6.1122E-16 93.51 3 1 1.1267 1.1709 24.26 3 Plateau 1.105 1.129 5.6448 2 0 Median 0.90873 0.74588 NaN 1 0 Median 36805000 17528000 19277000 31613000 14238000 17375000 5191900 3289800 1902100 10 2048 10 20;21;22;23 31;32;33;34;35;36;37 35 7 AAAEQAISVR AEQTAAREQAKEACKAAAEQAISVRQQVVL KEACKAAAEQAISVRQQVVLENAAKKRERA K A A V R Q 4 1 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1014.5458 Q01780 Q01780 759 768 EXOSC10 Exosome component 10 yes yes 2 1.4673E-05 101.72 1 0.90647 0.99522 NaN 1 Median 0.90647 0.99522 NaN 1 0 Median NaN NaN NaN 0 0 Median 40390000 24623000 15767000 40390000 24623000 15767000 0 0 0 11 1676 11 24 38 38 1 AAAFPPGFSISEIK GAGDGATENGVQPPKAAAFPPGFSISEIKN KAAAFPPGFSISEIKNKQRRHLMFTRWKQQ K A A I K N 3 0 0 0 0 0 1 1 0 2 0 1 0 2 2 2 0 0 0 0 0 0 14 0 1433.7555 Q9H9Y2;X6R7Q1 Q9H9Y2 45 58 RPF1 Ribosome production factor 1 yes no 2 0.00013109 79.974 1 2 0.95053 1.0671 22.261 3 Plateau 0.95053 1.0671 NaN 1 0 Median 0.90815 0.72947 5.1634 2 0 Median 79241000 42823000 36418000 67733000 37158000 30575000 11508000 5665100 5842900 12 2048 12 25;26;27 39;40;41;42;43;44 40 6 AAAGQESEGPAVGPPQPLGK GEAAAAAAAERGEMKAAAGQESEGPAVGPP ESEGPAVGPPQPLGKELQDGAESNGGGGGG K A A G K E 4 0 0 0 0 2 2 4 0 0 1 1 0 0 4 1 0 0 0 1 0 0 20 0 1859.9377 A0A0S2Q0B1;O14497 A0A0S2Q0B1 52 71 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 2.2464E-07 85.45 1 0.87743 0.86051 NaN 1 Median 0.87743 0.86051 NaN 1 0 Median NaN NaN NaN 0 0 Median 8843900 4433800 4410100 8843900 4433800 4410100 0 0 0 13 544 13 28 45;46 46 2 AAAGYPDPYSR LVGRELSEQLGQAERAAAGYPDPYSRASLS QAERAAAGYPDPYSRASLSLWQAMEKGLVP R A A S R A 3 1 0 1 0 0 0 1 0 0 0 0 0 0 2 1 0 0 2 0 0 0 11 0 1166.5356 A0A075B730;A0A087X1U6;P58107 A0A075B730 1298 1308 EPPK1 Epiplakin no no 2 0.013755 48.423 2 1.7485 1.8145 NaN 1 Median 1.7485 1.8145 NaN 1 0 Median NaN NaN NaN 0 0 Median 39168000 8945700 30223000 39168000 8945700 30223000 0 0 0 14 397;1622 14 29;30 47;48;49 47 3 AAAIGIDLGTTYSCVGVFQHGK ______________________________ LGTTYSCVGVFQHGKVEIIANDQGNRTTPS K A A G K V 3 0 0 1 1 1 0 4 1 2 1 1 0 1 0 1 2 0 1 2 0 0 22 0 2264.126 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNX1;B4E1T6;B4DNV4 A8K5I0 4 25 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 2.5785E-08 62.684 1 2 1.1338 0.91049 33.468 3 Median 0.46648 0.51098 NaN 1 0 Median 1.1487 0.91233 0.28551 2 0 Median 67003000 38808000 28195000 40837000 26371000 14466000 26167000 12437000 13729000 15 533 15 31;32;33 50;51;52;53 53 4 AAALDVYNAVSTSFQR MSGLPDLLKRQIAKKAAALDVYNAVSTSFQ AALDVYNAVSTSFQRVVHVQQKDDGCCLWH K A A Q R V 4 1 1 1 0 1 0 0 0 0 1 0 0 1 0 2 1 0 1 2 0 0 16 0 1711.8529 Q96QE3;H0UIC2;A0A075B754 Q96QE3 854 869 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.00011625 75.479 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9514800 0 9514800 5541900 0 5541900 3972900 0 3972900 16 1984 16 34;35;36 54;55;56 55 3 AAALVLQTIWGYK VLINKSGNRSEKEVRAAALVLQTIWGYKEL VRAAALVLQTIWGYKELRKPLEKEGWKKSD R A A Y K E 3 0 0 0 0 1 0 1 0 1 2 1 0 0 0 0 1 1 1 1 0 0 13 0 1432.8078 Q7KZJ3;A0A024R4Z0;Q96FS1;Q68DU0;C9JZR2;O60716;A0A024R4Y7 Q7KZJ3 492 504 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 2 0.0036679 63.184 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 17 165 17 37 57 57 1 AAAPAPEEEMDECEQALAAEPK EEKQKPQAERKEEKKAAAPAPEEEMDECEQ EEMDECEQALAAEPKAKDPFAHLPKSTFVL K A A P K A 7 0 0 1 1 1 6 0 0 0 1 1 1 0 3 0 0 0 0 0 0 0 22 0 2356.0199 Q53YD7;P26641;Q2F840 Q53YD7 254 275 EEF1G Elongation factor 1-gamma yes no 2 7.3331E-19 98.943 3 3.9284 3.9736 37.97 2 Median 3.9284 3.9736 37.97 2 0 Median NaN NaN NaN 0 0 Median 26260000 5318100 20941000 26260000 5318100 20941000 0 0 0 18 1522 18 38;39;40 58;59;60;61;62;63 63 1287 6 AAASHLFPFEK QKLKGGPKKTKREKKAAASHLFPFEKL___ REKKAAASHLFPFEKL______________ K A A E K L 3 0 0 0 0 0 1 0 1 0 1 1 0 2 1 1 0 0 0 0 0 0 11 0 1216.6241 A0A024R2M8 A0A024R2M8 929 939 XPC yes yes 3 0.02256 24.071 2 0.57747 0.59736 16.952 2 Median 0.57747 0.59736 16.952 2 0 Median NaN NaN NaN 0 0 Median 57667000 37246000 20421000 57667000 37246000 20421000 0 0 0 19 118 19 41;42 64;65 65 2 AAAVLPVLDLAQR KRIEAIVKNYPEGHKAAAVLPVLDLAQRQN HKAAAVLPVLDLAQRQNGWLPISAMNKVAE K A A Q R Q 4 1 0 1 0 1 0 0 0 0 3 0 0 0 1 0 0 0 0 2 0 0 13 0 1335.7874 Q9UEH5;Q6IPW4;Q6IB76;A8K750;E7EPT4;P19404 Q9UEH5 58 70 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 2 0.015726 36.684 1 1.8301 1.9338 NaN 1 Median 1.8301 1.9338 NaN 1 0 Median NaN NaN NaN 0 0 Median 3917800 1241400 2676500 3917800 1241400 2676500 0 0 0 20 766 20 43 66 66 1 AAAYSAQVQPVDGATR AQMEAEWREALRALRAAAYSAQVQPVDGAT AAYSAQVQPVDGATRKKSQRVCRPRSIWRA R A A T R K 5 1 0 1 0 2 0 1 0 0 0 0 0 0 1 1 1 0 1 2 0 0 16 0 1603.7954 Q9H7E9 Q9H7E9 183 198 C8orf33 UPF0488 protein C8orf33 yes yes 2 7.9452E-57 182.41 2 2 0.97746 0.9428 2.564 4 Median 0.90635 0.95921 2.6808 2 0 Median 1.0729 0.93137 1.9646 2 0 Median 74656000 36861000 37794000 65086000 32273000 32813000 9569400 4588700 4980700 21 2040 21 44;45;46;47 67;68;69;70;71;72;73;74 71 8 AACEQQAVALTLQEDR RFGLSAAEDITPRFRAACEQQAVALTLQED ACEQQAVALTLQEDRASLTLSGGPSALAFD R A A D R A 4 1 0 1 1 3 2 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 16 0 1801.8629 Q9BUH6 Q9BUH6 78 93 C9orf142 Protein PAXX yes yes 2 0.0028798 43.594 2 1.2353 1.0329 NaN 1 Median NaN NaN NaN 0 0 Median 1.2353 1.0329 NaN 1 0 Median 5229600 3164700 2064900 0 0 0 5229600 3164700 2064900 22 2005 22 48;49 75;76;77 75 3 AACIAEQYHTVLK LQNNMVLVKLDLRKKAACIAEQYHTVLKLQ KKAACIAEQYHTVLKLQGQVSAKKRLGTNQ K A A L K L 3 0 0 0 1 1 1 0 1 1 1 1 0 0 0 0 1 0 1 1 0 0 13 0 1502.7551 O95235 O95235 807 819 KIF20A Kinesin-like protein KIF20A yes yes 2;3 0.0036636 40.025 1 3 1.2188 0.97278 16.327 4 Median 0.6496 0.72951 NaN 1 0 Median 1.2223 1.0038 5.5076 3 0 Median 97694000 48347000 49348000 68456000 35245000 33210000 29239000 13101000 16138000 23 1421 23 50;51;52;53 78;79;80;81;82 81 5 AACNLLQR SARCQAFRTREGRLKAACNLLQRGITNLCV TREGRLKAACNLLQRGITNLCVIGGDGSLT K A A Q R G 2 1 1 0 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 944.48618 Q01813;Q5VSR5;V9GYV7 Q01813 110 117 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.047548 55.441 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 24 1677 24 54 83 83 1 AACQCVEPIK WLHPTLKQDILEEIKAACQCVEPIKSAVCI LEEIKAACQCVEPIKSAVCIADPLPTPSQE K A A I K S 2 0 0 0 2 1 1 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 10 0 1174.5475 Q96F88;Q99575 Q96F88 345 354 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 9.6716E-05 96.936 1 2 0.53006 0.42694 8.1605 2 Median NaN NaN NaN 0 0 Median 0.53006 0.42694 8.1605 2 0 Median 22475000 19123000 3352700 13359000 13359000 0 9116600 5763900 3352700 25 1965 25 55;56;57 84;85;86;87;88 84 5 AADEEAFEDNSEEYIR TSICEKVIVPNMEFRAADEEAFEDNSEEYI ADEEAFEDNSEEYIRRDLEGSDIDTRRRAA R A A I R R 3 1 1 2 0 0 5 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 16 0 1886.7806 B4DUC5;P55060;B4DPS6;B4DM31;B4DM67 B4DUC5 139 154 CSE1L Exportin-2 yes no 2 1.6451E-18 125.54 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5616100 0 5616100 5616100 0 5616100 0 0 0 26 1037 26 58;59;60 89;90;91 89 3 AADIIDGLR EVIHRKALQRIYADKAADIIDGLRKNPSIA RIYADKAADIIDGLRKNPSIAVPIVLKRLK K A A L R K 2 1 0 2 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 9 0 942.51345 Q96ST3 Q96ST3 677 685 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0055262 67.993 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 27 1990 27 61;62 92;93 93 2 AADISLDNLVEGK QYGLGPYEAVTPLTKAADISLDNLVEGKRK TKAADISLDNLVEGKRKRRSNVSSPATPTA K A A G K R 2 0 1 2 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 13 0 1343.6933 H7BZY0;B3KVT9;B7Z3E7;A6NNK5;Q12888 H7BZY0 82 94 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 0.0054002 57.836 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7794400 7794400 0 7794400 7794400 0 0 0 0 28 689 28 63 94 94 1 AADLNGDLTATR HTFKKMLPRDERRFKAADLNGDLTATREEF RFKAADLNGDLTATREEFTAFLHPEEFEHM K A A T R E 3 1 1 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 0 0 0 12 0 1216.6048 V9HW95;Q15293;E9PP27;Q5J7V8 V9HW95 177 188 HEL-S-84;RCN1 Reticulocalbin-1 yes no 2 0.030675 56.548 1 1.0207 1.0239 NaN 1 Median 1.0207 1.0239 NaN 1 0 Median NaN NaN NaN 0 0 Median 17592000 8778200 8814300 17592000 8778200 8814300 0 0 0 29 1757 29 64 95 95 0 AADPPAENSSAPEAEQGGAE RRPENPKPQDGKETKAADPPAENSSAPEAE AENSSAPEAEQGGAE_______________ K A A A E - 6 0 1 1 0 1 4 2 0 0 0 0 0 0 3 2 0 0 0 0 0 0 20 0 1896.7973 P67809;Q7KZ24;H0Y449;A0JLU4 P67809 305 324 YBX1 Nuclease-sensitive element-binding protein 1 yes no 2 0.011663 37.954 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5662700 0 0 5662700 0 0 0 0 0 30 1657 30 65 96 96 1 AADPVPSFDESSQDTSEK KMKVAPLFLVRKAQKAADPVPSFDESSQDT PVPSFDESSQDTSEKSQDCDVQCKAKRDFL K A A E K S 2 0 0 3 0 1 2 0 0 0 0 1 0 1 2 4 1 0 0 1 0 0 18 0 1908.8225 Q96QE3;H0UIC2;A0A075B754 Q96QE3 806 823 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.003132 50.088 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5577000 0 5577000 5577000 0 5577000 0 0 0 31 1984 31 66 97 97 1 AADRLEQELLR QKRRLDKVRRKKEEKAADRLEQELLRDTVK KEEKAADRLEQELLRDTVKFGEVVLQPPEL K A A L R D 2 2 0 1 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 11 1 1312.7099 H6QX63;Q6PK04;I3L0U5 H6QX63 199 209 CCDC137 Coiled-coil domain-containing protein 137 yes no 3 0.0063514 37.144 1 1 0.82544 0.81094 18.255 2 Median 0.86508 0.92268 NaN 1 0 Median 0.7876 0.71274 NaN 1 0 Median 19626000 9838300 9787900 15413000 7303900 8108700 4213600 2534500 1679200 32 1307 32 67;68 98;99 98 2 AADSDDGAVSAPAASDGGVSK ______________________________ GAVSAPAASDGGVSKSTTSGEELVVQVPVV M A A S K S 6 0 0 4 0 0 0 3 0 0 0 1 0 0 1 4 0 0 0 2 0 0 21 0 1846.8181 Q96GM8 Q96GM8 2 22 TOE1 Target of EGR1 protein 1 yes yes 2 0.004614 45.115 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 33 1968 33 69 100 100 1 AADSICDGDLVDSQIR AAGGDMKKHLMLLSRAADSICDGDLVDSQI ADSICDGDLVDSQIRSKQNWSLLPAQAIYA R A A I R S 2 1 0 4 1 1 0 1 0 2 1 0 0 0 0 2 0 0 0 1 0 0 16 0 1733.789 P35251 P35251 911 926 RFC1 Replication factor C subunit 1 yes yes 2 3.3515E-06 82.543 2 1 0.44095 0.40469 41.987 2 Median 0.30366 0.30073 NaN 1 0 Median 0.64033 0.54458 NaN 1 0 Median 23714000 19345000 4368900 20574000 17374000 3200300 3140300 1971800 1168500 34 1542 34 70;71;72 101;102;103;104;105 101 5 AADSLQQNLQR PASTIARPNMALGKKAADSLQQNLQRDYDR LGKKAADSLQQNLQRDYDRAMSWKYSRGAG K A A Q R D 2 1 1 1 0 3 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1242.6317 Q1ED39;H3BNU8 Q1ED39 408 418 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 1.2689E-11 119.21 2 1 0.83474 0.86684 7.6144 2 Median 0.83474 0.86684 7.6144 2 0 Median NaN NaN NaN 0 0 Median 43770000 22473000 21297000 39814000 22473000 17341000 3956300 0 3956300 35 1775 35 73;74;75 106;107;108 108 1 AAEAADLGLGAAVPVELR ______________________________ AADLGLGAAVPVELRRERRMVCVEYPGVVR M A A L R R 6 1 0 1 0 0 2 2 0 0 3 0 0 0 1 0 0 0 0 2 0 0 18 0 1721.9312 Q9Y5Q8;Q5T7U1 Q9Y5Q8 2 19 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 4.2078E-16 115.12 2 1.1262 1.1542 12.911 2 Median 1.1262 1.1542 12.911 2 0 Median NaN NaN NaN 0 0 Median 11486000 5041600 6444500 11486000 5041600 6444500 0 0 0 36 2149 36 76;77 109;110;111;112 110 3 AAEAFLR ETSGALKWKEDLSRKAAEAFLRQQQAAPNL WKEDLSRKAAEAFLRQQQAAPNLRKLIYGT K A A L R Q 3 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 776.41809 Q14692 Q14692 675 681 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0068253 129.96 2 2 1.1517 1.0897 11.154 4 Median 0.89293 1.0037 8.4183 2 0 Median 1.4012 1.1747 7.4104 2 0 Median 141630000 72005000 69624000 124720000 65550000 59168000 16911000 6455300 10456000 37 1742 37 78;79;80;81 113;114;115;116;117;118;119;120 116 8 AAECNIVVTQPR QVPQFILDDFIQNDRAAECNIVVTQPRRIS NDRAAECNIVVTQPRRISAVSVAERVAFER R A A P R R 2 1 1 0 1 1 1 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 12 0 1356.682 Q08211;Q58F26;Q6PJK6 Q08211 435 446 DHX9 ATP-dependent RNA helicase A yes no 2 6.6475E-18 143.5 2 2 1.4259 1.4337 2.6531 4 Median 1.2385 1.4337 0.3708 2 0 Median 1.6731 1.4101 4.2689 2 0 Median 463440000 206760000 256670000 419550000 192160000 227380000 43892000 14602000 29290000 38 1691 38 82;83;84;85 121;122;123;124;125;126;127 124 7 AAEFGEPTSEQTGTAAGK KVEVENVMKRKFSLRAAEFGEPTSEQTGTA FGEPTSEQTGTAAGKTIAQTTAPVSWKPQD R A A G K T 4 0 0 0 0 1 3 3 0 0 0 1 0 1 1 1 3 0 0 0 0 0 18 0 1750.801 O95425 O95425 1055 1072 SVIL Supervillin yes yes 2 2.5415E-23 124.07 2 3.0214 3.1625 NaN 1 Median 3.0214 3.1625 NaN 1 0 Median NaN NaN NaN 0 0 Median 17284000 2143900 15140000 17284000 2143900 15140000 0 0 0 39 1425 39 86;87 128;129;130 128 3 AAEISAMLK EIPKYITASTFAQARAAEISAMLKAVTQKS TFAQARAAEISAMLKAVTQKSSNSLVFQTL R A A L K A 3 0 0 0 0 0 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 9 0 932.5001 Q96F88;Q99575;E5RK39 Q96F88 112 120 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.0025497 67.169 1 0.66411 0.6684 NaN 1 Median 0.66411 0.6684 NaN 1 0 Median NaN NaN NaN 0 0 Median 27661000 17428000 10234000 27661000 17428000 10234000 0 0 0 40 1965 40 88 131 131 1809 1 AAELETDIR QAVRHLPQSVRIYIRAAELETDIRAKKRVL VRIYIRAAELETDIRAKKRVLRKALEHVPN R A A I R A 2 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1016.5138 O94906 O94906 379 387 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0068846 71.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12040000 12040000 0 12040000 12040000 0 0 0 0 41 1418 41 89 132 132 1 AAELIANSLATAGDGLIELR QQKKAAIISAEGDSKAAELIANSLATAGDG ANSLATAGDGLIELRKLEAAEDIAYQLSRS K A A L R K 5 1 1 1 0 0 2 2 0 2 4 0 0 0 0 1 1 0 0 0 0 0 20 0 1997.0793 Q6PUJ7;A8K401;P35232;Q6FHP5;C9JW96 Q6PUJ7 220 239 HEL-S-54e;PHB Prohibitin yes no 2 2.1774E-97 203.85 3 2 1.4656 1.6976 26.349 4 Median 1.4608 1.6976 24.158 3 0 Plateau 2.3997 2.0942 NaN 1 0 Median 542950000 186330000 356620000 402780000 164330000 238450000 140170000 21993000 118170000 42 730 42 90;91;92;93;94 133;134;135;136;137;138;139;140 139 8 AAELTATQVEEEEEEEDFRK KLILAQKLSELAVEKAAELTATQVEEEEEE ATQVEEEEEEEDFRKKLNAGYSNTATEWSQ K A A R K K 3 1 0 1 0 1 8 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 20 1 2352.0605 B3KMD9;B3KMC2;B3KMD2;A8KAE0;O75717 B3KMD9 55 74 WDHD1 WD repeat and HMG-box DNA-binding protein 1 yes no 3 8.2038E-05 53.278 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6449700 0 6449700 6449700 0 6449700 0 0 0 43 792 43 95 141 141 1 AAESLADPTEYENLFPGLK VVKLWRENLSKVNQKAAESLADPTEYENLF LADPTEYENLFPGLKEAFVVEEWVKETHAD K A A L K E 3 0 1 1 0 0 3 1 0 0 3 1 0 1 2 1 1 0 1 0 0 0 19 0 2064.0052 P35606 P35606 784 802 COPB2 Coatomer subunit beta yes yes 2 8.5353E-12 100.38 2 1.9667 2.0243 2.2809 2 Median 1.9667 2.0243 2.2809 2 0 Median NaN NaN NaN 0 0 Median 22553000 8355500 14197000 22553000 8355500 14197000 0 0 0 44 1545 44 96;97 142;143 143 2 AAESLTAIPEPASPQLLETPIHASQIQK PKSQASRNQRWGAVRAAESLTAIPEPASPQ PQLLETPIHASQIQKVEPAGRSRFTPELQP R A A Q K V 5 0 0 0 0 3 3 0 1 3 3 1 0 0 4 3 2 0 0 0 0 0 28 0 2939.5604 Q14676;B4DYH4 Q14676 1763 1790 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 2.3897E-19 80.359 2 2 0.40019 0.35767 22.409 4 Median 0.43328 0.44438 21.141 2 0 Median 0.40019 0.32225 5.1926 2 0 Median 66780000 42510000 24270000 43753000 26475000 17278000 23026000 16034000 6992100 45 1738 45 98;99;100;101 144;145;146;147;148;149;150 148 7 AAESSSDSSDSDSSEDDEAPSKPAGTTK AVVSKATTKPPPAKKAAESSSDSSDSDSSE SEDDEAPSKPAGTTKNSSNKPAVTTKSPAV K A A T K N 4 0 0 5 0 0 3 1 0 0 0 2 0 0 2 9 2 0 0 0 0 0 28 1 2757.122 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 358 385 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 0.00015308 35.016 2 1 1.9263 1.9401 36.563 2 Median 2.1773 2.5126 NaN 1 0 Median 1.7043 1.4981 NaN 1 0 Median 5674800 1511300 4163500 3722400 795410 2927000 1952300 715890 1236400 46 468 46 102;103;104 151;152;153 152 3 AAFALGGLGSGFASNR AQAAAERLGYPVLVRAAFALGGLGSGFASN AFALGGLGSGFASNREELSALVAPAFAHTS R A A N R E 4 1 1 0 0 0 0 4 0 0 2 0 0 2 0 2 0 0 0 0 0 0 16 0 1494.7579 Q53SY7;F8VPD4;P27708 Q53SY7 482 497 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00015361 72.29 2 1 1.1508 1.123 4.9042 3 Median 1.1467 1.1539 3.8408 2 0 Median 1.2432 1.0751 NaN 1 0 Median 26108000 12909000 13199000 24475000 12102000 12374000 1632400 806820 825610 47 1259 47 105;106;107 154;155;156 154 3 AAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDK AQAAAERLGYPVLVRAAFALGGLGSGFASN VAPAFAHTSQVLVDKSLKGWKEIEYEVVRD R A A D K S 8 1 1 1 0 1 2 4 1 0 5 1 0 3 1 4 1 0 0 3 0 0 37 1 3700.9213 Q53SY7;F8VPD4;P27708 Q53SY7 482 518 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 4 0.0085677 18.498 1 0.96554 1.0767 NaN 1 Median 0.96554 1.0767 NaN 1 0 Median NaN NaN NaN 0 0 Median 11211000 5988300 5222600 11211000 5988300 5222600 0 0 0 48 1259 48 108 157 157 1 AAFGCFGNWLATVEQR EYINDYGLIQIELTKAAFGCFGNWLATVEQ AFGCFGNWLATVEQRQEKETELELQMKLWM K A A Q R Q 3 1 1 0 1 1 1 2 0 0 1 0 0 2 0 0 1 1 0 1 0 0 16 0 1825.857 A8K330;Q8IWA0 A8K330 393 408 WDR75 WD repeat-containing protein 75 yes no 2 0.011459 42.209 1 0.68181 0.6891 NaN 1 Median 0.68181 0.6891 NaN 1 0 Median NaN NaN NaN 0 0 Median 9849600 5707500 4142200 9849600 5707500 4142200 0 0 0 49 716 49 109 158 158 1 AAFGLSEAGFNTACVTK EFDAVVVGAGGAGLRAAFGLSEAGFNTACV FGLSEAGFNTACVTKLFPTRSHTVAAQGGI R A A T K L 4 0 1 0 1 0 1 2 0 0 1 1 0 2 0 1 2 0 0 1 0 0 17 0 1742.8298 D6RFM5;A0A024QZ30;B4DYN5;P31040;A0A087X1I3;Q0QF12 D6RFM5 76 92 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 0.0006825 63.727 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9301600 9301600 0 9301600 9301600 0 0 0 0 50 10 50 110;111 159;160;161 161 3 AAFQLR SGQWPQDAEAVQRVRAAFQLRLAELLTQQH DAEAVQRVRAAFQLRLAELLTQQHGLQCRA R A A L R L 2 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 6 0 704.39696 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 759 764 NOL6 Nucleolar protein 6 yes no 2 0.037498 123.07 1 1.2254 1.3937 NaN 1 Median 1.2254 1.3937 NaN 1 0 Median NaN NaN NaN 0 0 Median 123580000 57023000 66556000 123580000 57023000 66556000 0 0 0 51 2038 51 112 162 162 1 AAFTVSLDPGPLEQFPHSMEPQLR FTKYTEMDYARAGNKAAFTVSLDPGPLEQF GPLEQFPHSMEPQLRQLGLPTALKRGVVTL K A A L R Q 2 1 0 1 0 2 2 1 1 0 3 0 1 2 4 2 1 0 0 1 0 0 24 0 2666.3163 A0A024RAE1;Q9UKD2 A0A024RAE1 131 154 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 3 3.7339E-06 43.64 1 1 1.1881 1.1637 37.997 2 Median 1.336 1.5224 NaN 1 0 Median 1.0565 0.88951 NaN 1 0 Median 107310000 46392000 60916000 102730000 44211000 58523000 4573600 2180700 2392900 52 302 52;53 113;114 163;164;165 164 214 3 AAFVLPEFAR VAQMQLKYYNSDVHRAAFVLPEFARKALND SDVHRAAFVLPEFARKALNDVS________ R A A A R K 3 1 0 0 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 10 0 1119.6077 P19623;K7EL89 P19623 286 295 SRM Spermidine synthase yes no 2 0.030208 52.482 2 1.0349 1.0519 22.254 2 Median 1.0349 1.0519 22.254 2 0 Median NaN NaN NaN 0 0 Median 15069000 6735100 8333600 15069000 6735100 8333600 0 0 0 53 1500 54 115;116 166;167;168 168 3 AAGDTTVIENSDVSPETESSEK KAQQSLELIQSKIVKAAGDTTVIENSDVSP IENSDVSPETESSEKETMSVSLNQTVTQLQ K A A E K E 2 0 1 2 0 0 4 1 0 1 0 1 0 0 1 4 3 0 0 2 0 0 22 0 2265.0132 A0A024R663;Q86UP2;G3V4Y7;B7Z6P3;H0YJP2;B3KWP6 A0A024R663 1300 1321 KTN1 Kinectin yes no 2 0.014282 40.025 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 54 197 55 117 169 169 1 AAGFERPSPVQLK FESLLLSRPVLEGLRAAGFERPSPVQLKAI LRAAGFERPSPVQLKAIPLGRCGLDLIVQA R A A L K A 2 1 0 0 0 1 1 1 0 0 1 1 0 1 2 1 0 0 0 1 0 0 13 1 1398.7619 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6 Q8TDR3 79 91 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 3 0.031761 25.178 1 2.4102 2.6972 NaN 1 Median 2.4102 2.6972 NaN 1 0 Median NaN NaN NaN 0 0 Median 20988000 3705600 17283000 20988000 3705600 17283000 0 0 0 55 1901 56 118 170 170 1 AAGGFTHDELLK AVRKLRKYIVARTQRAAGGFTHDELLKVWK TQRAAGGFTHDELLKVWKGLFYCMWMQDKP R A A L K V 2 0 0 1 0 0 1 2 1 0 2 1 0 1 0 0 1 0 0 0 0 0 12 0 1257.6354 Q6PJJ2;P56182;B4DZM3;Q53FR7 Q6PJJ2 48 59 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2;3 2.3237E-30 145.99 5 1 0.95676 1.084 20.487 3 Plateau 0.95676 1.0755 3.4675 2 0 Median 0.92947 0.75618 NaN 1 0 Median 271120000 127950000 143160000 264010000 124940000 139070000 7108100 3017100 4091000 56 1618 57 119;120;121;122;123;124 171;172;173;174;175;176;177;178;179 177 9 AAGLVSDLDADSGLTLSR SEQEEYAKEAQQSLRAAGLVSDLDADSGLT LVSDLDADSGLTLSRRIRRAQLAHYNFQFV R A A S R R 3 1 0 3 0 0 0 2 0 0 4 0 0 0 0 3 1 0 0 1 0 0 18 0 1759.8952 Q9BW92;Q6ST48;F6S7Q7;U3KQG0;Q9H045 Q9BW92 638 655 TARS2;DKFZp667F1511 Threonine--tRNA ligase, mitochondrial yes no 2 0.040009 38.3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 57 2011 58 125 180 180 1 AAGPSLSHTSGGTQSK STVSKAYGASKTFGKAAGPSLSHTSGGTQS AGPSLSHTSGGTQSKVVPIASLTPYQSKWT K A A S K V 2 0 0 0 0 1 0 3 1 0 1 1 0 0 1 4 2 0 0 0 0 0 16 0 1484.7219 P27694 P27694 168 183 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2;3 2.2376E-06 93.011 3 0.83783 0.86936 12.739 3 Median 0.83783 0.86936 12.739 3 0 Median NaN NaN NaN 0 0 Median 32182000 18904000 13278000 32182000 18904000 13278000 0 0 0 58 1525 59 126;127;128 181;182;183;184;185 181 5 AAGTLYTYPENWR ______________________________ ______________________________ M A A W R A 2 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 2 1 2 0 0 0 13 0 1540.731 Q53YD7;P26641;B4DUK7;Q2F838;B4DSR4 Q53YD7 2 14 EEF1G Elongation factor 1-gamma yes no 2 0.00022128 79.974 1 1.4817 1.475 NaN 1 Median 1.4817 1.475 NaN 1 0 Median NaN NaN NaN 0 0 Median 8149000 4057700 4091300 8149000 4057700 4091300 0 0 0 59 1522 60 129 186;187 186 2 AAGVEAAAEVAATEIK ______________________________ AGVEAAAEVAATEIKMEEESGAPGVPSGNG M A A I K M 7 0 0 0 0 0 3 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 16 0 1499.7831 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 2 17 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 2.4174E-12 122.42 2 1.6152 1.8016 1.0435 2 Median 1.6152 1.8016 1.0435 2 0 Median NaN NaN NaN 0 0 Median 113940000 42757000 71184000 113940000 42757000 71184000 0 0 0 60 1599 61 130;131 188;189;190;191 190 4 AAGVNVEPFWPGLFAK DEVTVTEDKINALIKAAGVNVEPFWPGLFA AGVNVEPFWPGLFAKALANVNIGSLICNVG K A A A K A 3 0 1 0 0 0 1 2 0 0 1 1 0 2 2 0 0 1 0 2 0 0 16 0 1701.8879 Q6ICQ4;Q6FG99;A0A024R608;P05386;Q7Z612 Q6ICQ4 34 49 RPLP1 60S acidic ribosomal protein P1 yes no 2 9.2664E-25 144.17 2 1 0.76434 0.89949 25.485 3 Plateau 0.75924 0.89441 0.80134 2 0 Median 0.66 0.57528 NaN 1 0 Median 896460000 519250000 377210000 737040000 421130000 315920000 159420000 98128000 61295000 61 195 62 132;133;134 192;193;194;195;196;197;198 193 7 AAIAQALAGEVSVVPPSR PREAYPDGSSKEKRRAAIAQALAGEVSVVP AQALAGEVSVVPPSRLMALLGQALKWQQHQ R A A S R L 5 1 0 0 0 1 1 1 0 1 1 0 0 0 2 2 0 0 0 3 0 0 18 0 1734.9628 A0MNN4;Q2TAY7 A0MNN4 143 160 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 2 1.8752E-22 132.86 2 1.326 1.3312 9.4062 2 Median 1.326 1.3312 9.4062 2 0 Median NaN NaN NaN 0 0 Median 27253000 11153000 16100000 27253000 11153000 16100000 0 0 0 62 642 63 135;136 199;200;201;202;203;204 200 6 AAIATFYVNVK THLEHQQRIESKVCKAAIATFYVNVKEQFI KVCKAAIATFYVNVKEQFIKMLKESQMLTN K A A V K E 3 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 1 2 0 0 11 0 1195.6601 Q71F23;A8K8D2;Q09GN1;A5D8X7 Q71F23 276 286 CENPU;MLF1IP Centromere protein U yes no 2 0.0058056 55.549 2 1.4194 1.1359 5.9742 2 Median NaN NaN NaN 0 0 Median 1.4194 1.1359 5.9742 2 0 Median 5716600 2135100 3581500 0 0 0 5716600 2135100 3581500 63 1866 64 137;138 205;206 205 2 AAIDWFDGK KGEATVSFDDPPSAKAAIDWFDGKEFHGNI DPPSAKAAIDWFDGKEFHGNIIKVSFATRR K A A G K E 2 0 0 2 0 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 0 9 0 1021.4869 B4E312;A0A075B7D9;Q92804;Q70T18;Q59H57;B4DR70;A8K4H1;Q8TBR3;Q6IBQ5;H3BPE7;Q13344;P35637 B4E312 101 109 TAF15;FUS TATA-binding protein-associated factor 2N;RNA-binding protein FUS no no 2 0.027012 54.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12764000 12764000 0 12764000 12764000 0 0 0 0 64 399;734 65 139 207 207 1 AAIEEIK EYLTGFHKRKVERKKAAIEEIKQRLKEEQR KRKVERKKAAIEEIKQRLKEEQRKLREERH K A A I K Q 2 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 7 0 772.43307 B4DGP7;V9GYY5;A0A024R1M6;Q9UGY1;B3KQ09 B4DGP7 44 50 MGC3731;NOL12 Nucleolar protein 12 yes no 2 0.026953 83.614 1 0.77496 0.85816 NaN 1 Median 0.77496 0.85816 NaN 1 0 Median NaN NaN NaN 0 0 Median 46094000 25393000 20700000 46094000 25393000 20700000 0 0 0 65 80 66 140 208;209 208 2 AAIGCGIVESILNWVK KSFGSTCQLSEKFIKAAIGCGIVESILNWV AIGCGIVESILNWVKFKAQVQLNKKCSAVK K A A V K F 2 0 1 0 1 0 1 2 0 3 1 1 0 0 0 1 0 1 0 2 0 0 16 0 1728.9233 P11388 P11388 401 416 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.054793 22.578 1 1.4046 1.216 NaN 1 Median NaN NaN NaN 0 0 Median 1.4046 1.216 NaN 1 0 Median 247160000 99617000 147550000 0 0 0 247160000 99617000 147550000 66 1471 67 141 210 210 1 AAIGLLAR FRDISPVLKDPASFRAAIGLLARHLKATHG KDPASFRAAIGLLARHLKATHGGRIDYIAG R A A A R H 3 1 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 783.49667 H3BQB1;P07741;H3BQF1;H3BQZ9;H3BSW3 H3BQB1 41 48 APRT Adenine phosphoribosyltransferase yes no 2 0.0056884 89.673 2 3.0013 3.1789 12.37 2 Median 3.0013 3.1789 12.37 2 0 Median NaN NaN NaN 0 0 Median 74561000 17940000 56621000 74561000 17940000 56621000 0 0 0 67 1302 68 142;143 211;212;213 213 3 AAIISAEGDSK ERARFVVEKAEQQKKAAIISAEGDSKAAEL QQKKAAIISAEGDSKAAELIANSLATAGDG K A A S K A 3 0 0 1 0 0 1 1 0 2 0 1 0 0 0 2 0 0 0 0 0 0 11 0 1060.5401 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96 Q6PUJ7 209 219 HEL-S-54e;PHB Prohibitin yes no 2 2.4377E-05 119.68 1 2 2.0517 1.9755 15.731 2 Median 1.5106 1.7675 NaN 1 0 Median 2.7866 2.2079 NaN 1 0 Median 332130000 124900000 207220000 298570000 119740000 178820000 33560000 5159100 28401000 68 730 69 144;145;146 214;215;216;217;218 214 5 AAILPTSIFLTNK PSNHVIDRWLGEPIKAAILPTSIFLTNKKG IKAAILPTSIFLTNKKGFPVLSKMHQRLIF K A A N K K 2 0 1 0 0 0 0 0 0 2 2 1 0 1 1 1 2 0 0 0 0 0 13 0 1387.8075 B4DV00;B2RDD7;O14744;H0YJX6 B4DV00 122 134 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.00533 65.719 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10736000 10736000 0 10736000 10736000 0 0 0 0 69 885 70 147;148 219;220 220 2 AAISFPRKR ______________________________ ______________________________ M A A K R L 2 2 0 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 9 2 1044.6192 Q8WY78 Q8WY78 2 10 C20orf161 yes yes 2 0.00552 65.038 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2781100 2781100 0 2781100 2781100 0 0 0 0 70 1944 71 149 221 221 1 AAITTLK SLLSGEGNVTFNGHKAAITTLKYDQLGGRL NVTFNGHKAAITTLKYDQLGGRLASGSKDT K A A L K Y 2 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 716.44324 Q5TDG3;Q9UNX4 Q5TDG3 108 114 WDR3 WD repeat-containing protein 3 yes no 2 0.02688 86.866 1 2 1.2158 1.1555 8.344 3 Plateau 1.0182 1.1555 NaN 1 0 Median 1.2379 1.0012 1.4728 2 0 Median 155280000 81127000 74148000 140580000 74920000 65660000 14695000 6206500 8488700 71 1827 72 150;151;152 222;223;224;225 222 4 AALAHSEEVTASQVAATK QRLREQLQLLEEQHRAALAHSEEVTASQVA AHSEEVTASQVAATKTLPNGRDALDGPAAE R A A T K T 6 0 0 0 0 1 2 0 1 0 1 1 0 0 0 2 2 0 0 2 0 0 18 0 1782.9112 Q15149;D3DWL0;H0YDN1 Q15149 2744 2761 PLEC;PLEC1 Plectin yes no 2;3 2.8364E-05 71.558 3 2 2.5942 2.0214 34.582 3 Median 1.2189 1.2322 NaN 1 0 Median 2.8079 2.2018 12.085 2 0 Median 14535000 5155500 9379900 6881900 2718300 4163500 7653600 2437200 5216300 72 1754 73 153;154;155;156;157 226;227;228;229;230 228 5 AALEALLPYTER RREAPEELLAYEGVRAALEALLPYTERHFQ GVRAALEALLPYTERHFQRLSRTLQAAAFL R A A E R H 3 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 1 0 1 0 0 0 12 0 1345.7242 Q12788;J3KNP2;A0JLS5 Q12788 755 766 TBL3 Transducin beta-like protein 3 yes no 2 5.1661E-06 133.23 2 2 1.0537 1.05 1.8034 4 Median 0.92015 1.0393 1.677 2 0 Median 1.2291 1.0607 1.6638 2 0 Median 274470000 138250000 136220000 201590000 105640000 95949000 72881000 32609000 40271000 73 1698 74 158;159;160;161 231;232;233;234;235;236;237;238;239;240 232 10 AALEAQNALHNMK PQSKGCCFVTFYTRKAALEAQNALHNMKVL RKAALEAQNALHNMKVLPGMHHPIQMKPAD K A A M K V 4 0 2 0 0 1 1 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 13 0 1409.7085 G5EA30;Q92879;E9PQK4;E9PSH0;E9PKU1 G5EA30 98 110 CELF1 CUGBP Elav-like family member 1 yes no 2 0.0087242 43.77 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9348400 0 9348400 9348400 0 9348400 0 0 0 74 1278 75 162 241;242 241 977 2 AALEEEVR LRKLQEDLQKEKADRAALEEEVRSLRHNNR QKEKADRAALEEEVRSLRHNNRRLQAESES R A A V R S 2 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 915.46616 F6RY50;B4E0W3;Q96FS4 F6RY50 898 905 SIPA1 Signal-induced proliferation-associated protein 1 yes no 2 0.0057275 89.55 1 1.4197 1.4037 NaN 1 Median 1.4197 1.4037 NaN 1 0 Median NaN NaN NaN 0 0 Median 15197000 5262100 9934600 15197000 5262100 9934600 0 0 0 75 1064 76 163 243 243 1 AALEEFSR LASVVDPRVASAAAKAALEEFSRVREEVPL VASAAAKAALEEFSRVREEVPLELVEAHVK K A A S R V 2 1 0 0 0 0 2 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 921.4556 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;B4DYF9 Q58EY4 717 724 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 0.006912 85.212 2 1 1.1793 1.1071 34.009 2 Median 0.84104 0.87043 NaN 1 0 Median 1.6536 1.408 NaN 1 0 Median 40222000 20621000 19602000 37390000 19259000 18131000 2832000 1361400 1470600 76 1798 77 164;165;166 244;245;246 244 3 AALEEVER QKSLAAEEEAARQRKAALEEVERLKAKVEE EAARQRKAALEEVERLKAKVEEARRLRERA K A A E R L 2 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 915.46616 Q15149 Q15149 2143 2150 PLEC Plectin yes yes 2 0.0029802 97.798 3 1.4197 1.4037 NaN 1 Median 1.4197 1.4037 NaN 1 0 Median NaN NaN NaN 0 0 Median 22345000 5262100 17082000 22345000 5262100 17082000 0 0 0 77 1754 78 167;168;169 247;248;249 248 3 AALEEVYPDLTPEETR QGVALLPFVDERRLRAALEEVYPDLTPEET ALEEVYPDLTPEETRRNSLGGDVLFVGKHH R A A T R R 2 1 0 1 0 0 4 0 0 0 2 0 0 0 2 0 2 0 1 1 0 0 16 0 1831.884 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 584 599 XRN2 5-3 exoribonuclease 2 yes no 2 0.042465 39.661 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 78 903 79 170 250 250 1 AALEEVYPDLTPEETRR QGVALLPFVDERRLRAALEEVYPDLTPEET LEEVYPDLTPEETRRNSLGGDVLFVGKHHP R A A R R N 2 2 0 1 0 0 4 0 0 0 2 0 0 0 2 0 2 0 1 1 0 0 17 1 1987.9851 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 584 600 XRN2 5-3 exoribonuclease 2 yes no 3 0.00017975 34.498 2 1.0086 0.90253 0.09696 2 Median NaN NaN NaN 0 0 Median 1.0086 0.90253 0.09696 2 0 Median 6749800 3630700 3119100 0 0 0 6749800 3630700 3119100 79 903 80 171;172 251;252 252 1 AALETDENLLLCAPTGAGK EGFKTLNRIQSKLYRAALETDENLLLCAPT TDENLLLCAPTGAGKTNVALMCMLREIGKH R A A G K T 4 0 1 1 1 0 2 2 0 0 4 1 0 0 1 0 2 0 0 0 0 0 19 0 1942.967 O75643;A4FU77 O75643 491 509 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 4.6231E-17 121.76 2 2 0.98528 0.90231 10.29 4 Median 0.94979 0.9935 9.1005 2 0 Median 1.0535 0.85504 3.0954 2 0 Median 91820000 39989000 51831000 72198000 31133000 41065000 19622000 8856500 10765000 80 1411 81 173;174;175;176 253;254;255;256;257;258;259;260;261 256 9 AALFNTR ECGGNLFDAISIAVKAALFNTRIPRVRVLE DAISIAVKAALFNTRIPRVRVLEDEEGSKD K A A T R I 2 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 791.42899 B2RDZ9;A0A024R2P7;Q15024;B4DIU0 B2RDZ9 158 164 EXOSC7 Exosome complex component RRP42 yes no 2 0.011486 108.24 2 0.82374 0.88069 6.0401 2 Median 0.82374 0.88069 6.0401 2 0 Median NaN NaN NaN 0 0 Median 63977000 33297000 30681000 63977000 33297000 30681000 0 0 0 81 120 82 177;178 262;263 263 2 AALGHLAGEAAAAPGPGTPCASR ______________________________ EAAAAPGPGTPCASRGARLPGPVSSARNPS M A A S R G 8 1 0 0 1 0 1 4 1 0 2 0 0 0 3 1 1 0 0 0 0 0 23 0 2102.0327 Q9H7E9 Q9H7E9 2 24 C8orf33 UPF0488 protein C8orf33 yes yes 2 1.157E-09 78.932 2 2 0.9989 0.85947 7.7387 2 Median NaN NaN NaN 0 0 Median 0.9989 0.85947 7.7387 2 0 Median 14628000 4705600 9922700 5740100 0 5740100 8888200 4705600 4182600 82 2040 83 179;180;181;182 264;265;266;267 264 4 AALGPLVTGLYDVQAFK ______________________________ LGPLVTGLYDVQAFKFGDFVLKSGLSSPIY R A A F K F 3 0 0 1 0 1 0 2 0 0 3 1 0 1 1 0 1 0 1 2 0 0 17 0 1761.9665 A8K5J1;P11172;B5LY71;B5LY69;E9PFD2;B5LY67;F2Z3P2;F2Z303;F8WDG4 A8K5J1 6 22 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 7.9648E-05 62.14 2 2.2589 2.397 7.4025 2 Median 2.2589 2.397 7.4025 2 0 Median NaN NaN NaN 0 0 Median 36705000 10937000 25768000 36705000 10937000 25768000 0 0 0 83 749 84 183;184 268;269;270;271 269 4 AALLNQHYQVNFK FPPEASGYLHIGHAKAALLNQHYQVNFKGK AKAALLNQHYQVNFKGKLIMRFDDTNPEKE K A A F K G 2 0 2 0 0 2 0 0 1 0 2 1 0 1 0 0 0 0 1 1 0 0 13 0 1544.81 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 217 229 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 1.0121E-05 98.156 2 2 1.2812 1.0002 50.556 3 Median 2.1811 2.3715 NaN 1 0 Median 1.2567 0.98817 1.7177 2 0 Median 81274000 16587000 64687000 71320000 12647000 58673000 9953700 3940000 6013700 84 1454 85 185;186;187;188 272;273;274;275;276;277 273 6 AALLSGPPGVGK KFGKFSGKDDGSSFKAALLSGPPGVGKTTT SFKAALLSGPPGVGKTTTASLVCQELGYSY K A A G K T 2 0 0 0 0 0 0 3 0 0 2 1 0 0 2 1 0 0 0 1 0 0 12 0 1065.6182 P35251 P35251 646 657 RFC1 Replication factor C subunit 1 yes yes 2 0.00021916 82.645 2 0.48841 0.49838 9.5735 2 Median 0.48841 0.49838 9.5735 2 0 Median NaN NaN NaN 0 0 Median 35507000 24500000 11007000 35507000 24500000 11007000 0 0 0 85 1542 86 189;190 278;279;280;281 279 4 AALMESQGQQQEER EREAEQMGNELERLRAALMESQGQQQEERG RAALMESQGQQQEERGQQEREVARLTQERG R A A E R G 2 1 0 0 0 4 3 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 14 0 1603.726 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 986 999 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 8.5613E-05 72.652 1 1 1.682 1.5823 10.781 2 Median 1.439 1.4662 NaN 1 0 Median 1.9661 1.7076 NaN 1 0 Median 8881700 2953300 5928500 6955400 2359900 4595500 1926400 593390 1333000 86 186;1747 87;88 191;192 282;283 282 148 2 AALNLPEAASYDEVR RIIEESTHCGPQAVRAALNLPEAASYDEVR AALNLPEAASYDEVRGKWQDAHLGKDQRDF R A A V R G 4 1 1 1 0 0 2 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 15 0 1617.7999 O95602;B9ZVN9;B7ZKR9;B7Z8X7;B7Z284;Q53T12 O95602 829 843 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.012811 51.286 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 87 1428 89 193 284 284 1 AALPGLDVLIYLK DAMHEMEEMIETKGRAALPGLDVLIYLKIT GRAALPGLDVLIYLKITGLLFPTSDFWHPV R A A L K I 2 0 0 1 0 0 0 1 0 1 4 1 0 0 1 0 0 0 1 1 0 0 13 0 1384.833 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 538 550 NOP14 Nucleolar protein 14 yes no 2 0.011281 40.727 1 1.068 1.1866 NaN 1 Median 1.068 1.1866 NaN 1 0 Median NaN NaN NaN 0 0 Median 50123000 24713000 25410000 50123000 24713000 25410000 0 0 0 88 790 90 194 285 285 1 AALQEELQLCK FCFTPHTEEGCLSERAALQEELQLCKGLVQ LSERAALQEELQLCKGLVQALQTKVTQQGL R A A C K G 2 0 0 0 1 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1301.6649 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1132 1142 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 3.3686E-06 97.635 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 89 587 91 195;196 286;287 286 2 AALQELLSK AVVSERLKIRGSLARAALQELLSKGLIKLV RGSLARAALQELLSKGLIKLVSKHRAQVIY R A A S K G 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 971.56515 P62851 P62851 86 94 RPS25 40S ribosomal protein S25 yes yes 2 1.6709E-05 121.05 2 2 0.88977 0.87103 59.325 4 Median 1.2286 1.4287 1.5384 2 0 Median 0.6366 0.51244 6.5801 2 0 Median 524030000 235940000 288090000 495210000 217870000 277350000 28823000 18075000 10748000 90 1649 92 197;198;199;200 288;289;290;291;292;293;294;295 291 8 AALRPLVK ______________________________ ______________________________ M A A V K P 2 1 0 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 8 1 866.57017 D3YTB1;A0A024R2G7;F8W727;P62910;D3YTI8 D3YTB1 2 9 RPL32 60S ribosomal protein L32 yes no 2 4.481E-05 146.94 2 2 0.8446 1.1638 28.247 4 Linear 0.93347 1.1276 6.1079 2 0 Median 0.7992 0.6942 1.6688 2 0 Median 1950500000 1044700000 905800000 1858800000 992760000 866010000 91748000 51962000 39786000 91 112 93 201;202;203;204 296;297;298;299;300;301;302 299 7 AALRPLVKPK ______________________________ ______________________________ M A A P K I 2 1 0 0 0 0 0 0 0 0 2 2 0 0 2 0 0 0 0 1 0 0 10 2 1091.7179 D3YTB1;A0A024R2G7;F8W727;P62910;D3YTI8 D3YTB1 2 11 RPL32 60S ribosomal protein L32 yes no 3 0.0071247 57.55 1 0.77442 0.9988 NaN 1 Median 0.77442 0.9988 NaN 1 0 Median NaN NaN NaN 0 0 Median 32774000 18203000 14571000 32774000 18203000 14571000 0 0 0 92 112 94 205 303;304 304 2 AALRPTDVVLEVGPGTGNMTVK HILKNPLIINSIIDKAALRPTDVVLEVGPG VVLEVGPGTGNMTVKLLEKAKEVVACELDP K A A V K L 2 1 1 1 0 0 1 3 0 0 2 1 1 0 2 0 3 0 0 4 0 0 22 1 2224.1886 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2;D6RCL3 A8K9K8 52 73 DIMT1 Probable dimethyladenosine transferase yes no 3 8.8748E-06 43.841 1 0.42398 0.35985 NaN 1 Median NaN NaN NaN 0 0 Median 0.42398 0.35985 NaN 1 0 Median 3002800 1935600 1067100 0 0 0 3002800 1935600 1067100 93 786 95 206 305 305 626 1 AALSALESFLK VLLKWCAHTNVELKKAALSALESFLKQVSN ELKKAALSALESFLKQVSNMVAKNAEMHKN K A A L K Q 3 0 0 0 0 0 1 0 0 0 3 1 0 1 0 2 0 0 0 0 0 0 11 0 1148.6441 P78527;B4DL41 P78527 311 321 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 6.7214E-10 127.4 2 2 0.46476 0.44259 55.479 4 Median 0.64716 0.72823 5.8045 2 0 Median 0.34584 0.27907 0.60052 2 0 Median 199530000 127480000 72051000 158960000 96982000 61974000 40573000 30495000 10078000 94 1665 96 207;208;209;210 306;307;308;309;310;311;312 308 7 AALSASEGEEVPQDK RISGLGLTPEQKQKKAALSASEGEEVPQDK AALSASEGEEVPQDKAPSHVPFLLIGGGTA K A A D K A 3 0 0 1 0 1 3 1 0 0 1 1 0 0 1 2 0 0 0 1 0 0 15 0 1529.7209 O95831;Q5RZA0 O95831 113 127 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 1.1173E-05 92.112 2 1 1.6475 1.6271 15.01 3 Median 1.5794 1.7189 7.7581 2 0 Median 1.6475 1.3494 NaN 1 0 Median 81658000 31960000 49698000 76709000 29929000 46780000 4949300 2031600 2917800 95 1431 97 211;212;213 313;314;315;316;317 314 5 AALSLPAK TKKMVATTKPKATAKAALSLPAKQAPQGSR KPKATAKAALSLPAKQAPQGSRDSSSDSDS K A A A K Q 3 0 0 0 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 8 0 769.46979 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 453 460 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.024726 55.676 1 0.76476 0.77783 NaN 1 Median 0.76476 0.77783 NaN 1 0 Median NaN NaN NaN 0 0 Median 30343000 17005000 13338000 30343000 17005000 13338000 0 0 0 96 468 98 214 318;319 319 2 AALTGLLHR SGTSYKDLMPHDLARAALTGLLHRTSVPKE PHDLARAALTGLLHRTSVPKEVVDYIIFGT R A A H R T 2 1 0 0 0 0 0 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 950.56615 P55084;B4DY96;B5MD38;D6W539;C9JEY0;C9JE81 P55084 82 90 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 3 0.0048273 47.198 2 1.2378 1.2152 NaN 1 Median 1.2378 1.2152 NaN 1 0 Median NaN NaN NaN 0 0 Median 20651000 7333000 13318000 20651000 7333000 13318000 0 0 0 97 1615 99 215;216 320;321;322 321 3 AALVDLEPGTMDSVR NVYYNESSSQKYVPRAALVDLEPGTMDSVR AALVDLEPGTMDSVRSGPFGQLFRPDNFIF R A A V R S 2 1 0 2 0 0 1 1 0 0 2 0 1 0 1 1 1 0 0 2 0 0 15 0 1572.7818 Q9BUF5;B4DP54;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 Q9BUF5 63 77 TUBB6 Tubulin beta-6 chain no no 2 0.000301 53.569 1 1.8832 1.8973 NaN 1 Median 1.8832 1.8973 NaN 1 0 Median NaN NaN NaN 0 0 Median 19488000 6521200 12966000 19488000 6521200 12966000 0 0 0 98 2004 100 217 323;324 323 1846 2 AAMEALVVEVTK LQISHEAAACITGLRAAMEALVVEVTKQPA GLRAAMEALVVEVTKQPAIISQLDPVNERM R A A T K Q 3 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 12 0 1259.6795 Q08211;B3KU66 Q08211 1105 1116 DHX9 ATP-dependent RNA helicase A yes no 2 1.3083E-05 106.62 2 3 2.0022 1.5785 50.809 5 Median 3.0815 3.4556 1.9034 2 0 Median 1.6882 1.3754 12.577 3 0 Median 194710000 48714000 145990000 178910000 42547000 136360000 15799000 6167200 9631400 99 1691 101;102 218;219;220;221;222 325;326;327;328;329;330;331;332;333 331 1510 9 AANAAENDFSVSQAEMSSR LKKQMEYERQVASLKAANAAENDFSVSQAE AENDFSVSQAEMSSRQAMLENASDIKLEKF K A A S R Q 5 1 2 1 0 1 2 0 0 0 0 0 1 1 0 4 0 0 0 1 0 0 19 0 1983.8592 Q8NE71;Q2L6I2;B4DNU2;Q59F96;H0YGW7;Q5STZ8 Q8NE71 276 294 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.5956E-17 122.78 2 0.88058 0.9101 2.206 2 Median 0.88058 0.9101 2.206 2 0 Median NaN NaN NaN 0 0 Median 46429000 26315000 20114000 46429000 26315000 20114000 0 0 0 100 1926 103 223;224 334;335;336;337;338 338 1756 5 AANLNSIIHR AGARDSRDNPLRKKKAANLNSIIHRLEKAA LRKKKAANLNSIIHRLEKAASREEPIEWEF K A A H R L 2 1 2 0 0 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1107.6149 P39880 P39880 1481 1490 CUX1 Homeobox protein cut-like 1 yes yes 3 0.022551 26.786 1 1.0999 1.1548 NaN 1 Median 1.0999 1.1548 NaN 1 0 Median NaN NaN NaN 0 0 Median 11142000 4932000 6209600 11142000 4932000 6209600 0 0 0 101 1556 104 225 339 339 1 AANNGALPPDLSYIVR FDYFPKPYPNSEAARAANNGALPPDLSYIV ANNGALPPDLSYIVRARHGGEDYVFSLLTG R A A V R A 3 1 2 1 0 0 0 1 0 1 2 0 0 0 2 1 0 0 1 1 0 0 16 0 1669.8788 Q8TBT6;P08574 Q8TBT6 177 192 CYC1 Cytochrome c1, heme protein, mitochondrial yes no 2 0.017273 30.059 1 1.3229 1.3208 NaN 1 Median 1.3229 1.3208 NaN 1 0 Median NaN NaN NaN 0 0 Median 16769000 8167600 8601700 16769000 8167600 8601700 0 0 0 102 1456 105 226 340 340 1 AANPVDFLSK DLTLYHRTSVTDFLRAANPVDFLSKASEIM TDFLRAANPVDFLSKASEIMVDDEELAQHP R A A S K A 2 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 10 0 1060.5553 Q8IY81;B4DKU3 Q8IY81 260 269 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 1;2 0.00050835 85.731 3 2 1.2433 1.1017 9.5983 5 Median 0.98408 1.107 8.5756 3 0 Median 1.2634 1.0135 1.2498 2 0 Median 279850000 133420000 146440000 258100000 124080000 134020000 21754000 9339000 12415000 103 1898 106 227;228;229;230;231 341;342;343;344;345;346;347;348;349 345 8 AANVLLSEQGDVK LDYLHSEKKIHRDIKAANVLLSEQGDVKLA IKAANVLLSEQGDVKLADFGVAGQLTDTQI K A A V K L 2 0 1 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1342.7092 Q8NBY1;B4E0Y9;Q9P289;Q9NWX4;Q499L9;C9JJV0;C9JDH9;C9J6L2;C9JCC0;C9J232;H7C279;Q5CZ67;B4E185;B4DMA5;B3KRS6;A0A0S2Z4Y2;B4DVS7;Q96BA2;A0A024R4B2;O00506 Q8NBY1 147 159 STK26;MST4;STK25;DKFZp686J1430 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25 yes no 2 1.1364E-08 141.1 1 1 1.5861 1.4406 59.57 2 Median 2.0935 2.1951 NaN 1 0 Median 1.2017 0.94535 NaN 1 0 Median 37812000 11706000 26106000 34695000 10493000 24201000 3117600 1213200 1904400 104 1065 107 232;233 350;351 350 2 AANVTLLTSLVEGEAVHLAR KLDKIGLNLPAGRRKAANVTLLTSLVEGEA LLTSLVEGEAVHLARDFGYVCETEFPAKAV K A A A R D 4 1 1 0 0 0 2 1 1 0 4 0 0 0 0 1 2 0 0 3 0 0 20 0 2063.1375 Q96SH1;P05549;A8K557;Q6VUC0;Q92481;B2R9E2 Q96SH1 285 304 TFAP2A;TFAP2E;TFAP2B Transcription factor AP-2-alpha;Transcription factor AP-2-epsilon;Transcription factor AP-2-beta yes no 3 7.2558E-14 105.79 4 1 0.59656 0.51124 9.8242 3 Plateau 0.59656 0.51124 9.8242 3 0 Plateau NaN NaN NaN 0 0 Median 33484000 24876000 8607700 26511000 17903000 8607700 6973100 6973100 0 105 1448 108 234;235;236;237;238 352;353;354;355;356 352 3 AAPDILIATPGR AVGGLDVKSQEAALRAAPDILIATPGRLID ALRAAPDILIATPGRLIDHLHNCPSFHLSS R A A G R L 3 1 0 1 0 0 0 1 0 2 1 0 0 0 2 0 1 0 0 0 0 0 12 0 1193.6768 B3GQE6;A0A087X059;B7Z6D5;Q96GQ7 B3GQE6 307 318 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 9.4492E-05 96.113 2 2 0.91805 0.90565 5.5605 4 Median 0.8159 0.94763 4.1894 2 0 Median 1.0167 0.87333 2.9225 2 0 Median 489370000 277810000 211560000 429880000 249120000 180760000 59491000 28689000 30803000 106 899;1099 109 239;240;241;242 357;358;359;360;361;362;363;364 360 8 AAPDPVLEAGPVAHGPLPVPLVLDNGSFQVR ______________________________ LPVPLVLDNGSFQVRAGWACPGQDPGPEPR R A A V R A 4 1 1 2 0 1 1 3 1 0 4 0 0 1 6 1 0 0 0 5 0 0 31 0 3131.6768 Q9H9F9 Q9H9F9 13 43 ACTR5 Actin-related protein 5 yes yes 3 0.00034093 25.054 1 0.69156 0.68797 NaN 1 Median 0.69156 0.68797 NaN 1 0 Median NaN NaN NaN 0 0 Median 8516600 4868500 3648100 8516600 4868500 3648100 0 0 0 107 2045 110 243 365 365 1 AAPEEPQQRPPEAVAAAPAGTTSSR RPPEQQDQEGGEAAKAAPEEPQQRPPEAVA PEAVAAAPAGTTSSRVLRGGRDRGRAAAAA K A A S R V 7 2 0 0 0 2 3 1 0 0 0 0 0 0 5 2 2 0 0 1 0 0 25 1 2488.2306 A0A0A6YYC7;A0A024R4Z4;A0A024R4Z1;Q96JP5 A0A0A6YYC7 24 48 ZFP91-CNTF;hCG_2042749;ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 3 2.8407E-12 69.981 2 0.58104 0.62295 13.365 2 Median 0.58104 0.62295 13.365 2 0 Median NaN NaN NaN 0 0 Median 27210000 16163000 11047000 27210000 16163000 11047000 0 0 0 108 166 111 244;245 366;367;368;369;370 368 5 AAPLAAPPPAPAAPPAVAPPAGPR PPSPGPAQPGPRAQRAAPLAAPPPAPAAPP APAAPPAVAPPAGPRRAPPPAVAAREPPLP R A A P R R 10 1 0 0 0 0 0 1 0 0 1 0 0 0 10 0 0 0 0 1 0 0 24 0 2124.1844 Q6SPF0 Q6SPF0 174 197 SAMD1 Atherin yes yes 2 8.5926E-12 70.622 2 2 1.0533 1.0543 15.632 4 Median 0.81554 0.90992 5.5232 2 0 Median 1.3847 1.1857 1.3199 2 0 Median 181320000 94374000 86950000 128170000 71997000 56177000 53150000 22377000 30773000 109 1861 112 246;247;248;249 371;372;373;374;375;376;377;378;379;380;381 377 11 AAPLDSIHSLAAYYIDCIR ASRLSIPTYGLQCTRAAPLDSIHSLAAYYI DSIHSLAAYYIDCIRQVQPEGPYRVAGYSY R A A I R Q 4 1 0 2 1 0 0 0 1 3 2 0 0 0 1 2 0 0 2 0 0 0 19 0 2148.0674 A0A0U1RQF0;P49327 A0A0U1RQF0 2274 2292 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 3.1504E-05 48.288 2 1.2354 1.2746 1.3117 2 Median 1.2354 1.2746 1.3117 2 0 Median NaN NaN NaN 0 0 Median 9719400 3665800 6053600 9719400 3665800 6053600 0 0 0 110 587 113 250;251 382;383 382 2 AAPPTAGSMAIEK KDEALAILAKLILNKAAPPTAGSMAIEKYP NKAAPPTAGSMAIEKYPLVFSPQMVGFYIK K A A E K Y 4 0 0 0 0 0 1 1 0 1 0 1 1 0 2 1 1 0 0 0 0 0 13 0 1242.6278 O75691 O75691 454 466 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00015268 64.906 2 1.7878 1.8729 0.4006 2 Median 1.7878 1.8729 0.4006 2 0 Median NaN NaN NaN 0 0 Median 40602000 14380000 26222000 40602000 14380000 26222000 0 0 0 111 1412 114 252;253 384;385;386;387 386 1101 4 AAPSDGFKPR ______________________________ ______________________________ M A A P R E 2 1 0 1 0 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 10 1 1044.5352 A8K6D2;Q92979;B4DQC7;B4DP65 A8K6D2 2 11 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 0.00037989 89.698 2 1.092 1.3043 1.4891 2 Median 1.092 1.3043 1.4891 2 0 Median NaN NaN NaN 0 0 Median 308550000 144870000 163680000 308550000 144870000 163680000 0 0 0 112 759 115 254;255 388;389;390;391 390 4 AAQAPSSFQLLYDLK EGGKGALALAQAVQRAAQAPSSFQLLYDLK AAQAPSSFQLLYDLKLPVEDKIRIIAQKIY R A A L K L 3 0 0 1 0 2 0 0 0 0 3 1 0 1 1 2 0 0 1 0 0 0 15 0 1650.8617 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 805 819 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 3.0476E-05 95.401 2 2 1.6115 1.4482 50.985 4 Median 2.2327 2.2614 3.6284 2 0 Median 1.1633 0.93609 2.3017 2 0 Median 39744000 15581000 24162000 30345000 11212000 19132000 9398500 4368600 5030000 113 196 116 256;257;258;259 392;393;394;395;396 392 5 AAQDLCEEALR FMKSVKLEWVQDNIRAAQDLCEEALRHYED DNIRAAQDLCEEALRHYEDFPKLWMMKGQI R A A L R H 3 1 0 1 1 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1274.5925 O94906 O94906 693 703 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0019705 63.426 2 0.71489 0.62358 6.2145 2 Median NaN NaN NaN 0 0 Median 0.71489 0.62358 6.2145 2 0 Median 3097200 1558100 1539100 0 0 0 3097200 1558100 1539100 114 1418 117 260;261 397;398;399 397 3 AAQDRDQIYR SRSYRGGGGGGGGWRAAQDRDQIYRRRSPS GGGWRAAQDRDQIYRRRSPSPYYSRGGYRS R A A Y R R 2 2 0 2 0 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 10 1 1234.6054 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995;H7C2L4 Q8N1H4 216 225 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2;3 4.4185E-09 115.78 4 1 1.2225 1.2997 19.835 5 Median 1.2244 1.3162 4.3378 4 0 Median 1.0189 0.85752 NaN 1 0 Median 144960000 64117000 80846000 133490000 58808000 74681000 11474000 5308600 6165500 115 889 118 262;263;264;265;266 400;401;402;403;404;405;406;407 400 8 AAQGEPQVQFK ______________________________ ______________________________ M A A F K L 2 0 0 0 0 3 1 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 11 0 1201.6091 B5MDF5;P62826;A0A087X0W0 B5MDF5 2 12 RAN GTP-binding nuclear protein Ran yes no 2 0.014123 50.805 2 2.119 2.3841 4.2412 2 Median 2.119 2.3841 4.2412 2 0 Median NaN NaN NaN 0 0 Median 148490000 49353000 99138000 148490000 49353000 99138000 0 0 0 116 1082 119 267;268 408;409 409 2 AAQHGVCSVLK GLLSFTVHPKPKIRKAAQHGVCSVLKGSEF KIRKAAQHGVCSVLKGSEFMFEKAPAHHPA K A A L K G 2 0 0 0 1 1 0 1 1 0 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1168.6023 B3KMR5;Q5JTH9 B3KMR5 255 265 RRP12 RRP12-like protein yes no 2 0.046988 45.158 2 1.642 1.3872 NaN 1 Median NaN NaN NaN 0 0 Median 1.642 1.3872 NaN 1 0 Median 3671900 2495700 1176200 0 0 0 3671900 2495700 1176200 117 907 120 269;270 410;411 411 2 AAQIPIVATTSTPGIVR ______________________________ QIPIVATTSTPGIVRNSKKRPASPSHNGSS M A A V R N 3 1 0 0 0 1 0 1 0 3 0 0 0 0 2 1 3 0 0 2 0 0 17 0 1693.9727 K7EQ79;Q6PI98;K7ELX9;K7ENM4;K7ENP7 K7EQ79 2 18 INO80C INO80 complex subunit C yes no 2 0.00010244 75.479 2 0.66224 0.69459 23.07 2 Median 0.66224 0.69459 23.07 2 0 Median NaN NaN NaN 0 0 Median 8444600 5076600 3368000 8444600 5076600 3368000 0 0 0 118 1345 121 271;272 412;413;414 412 3 AAQLAIR AHNVSSKNRKAIVERAAQLAIRVTNPNARL NRKAIVERAAQLAIRVTNPNARLRSEE___ R A A I R V 3 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 7 0 741.44972 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 115 121 RPL32 60S ribosomal protein L32 yes no 2 0.0011966 137.5 2 2 0.80654 0.81264 21.86 4 Median 0.82036 0.95917 1.1571 2 0 Median 0.76852 0.66113 6.8924 2 0 Median 627380000 367640000 259740000 562590000 329100000 233490000 64788000 38540000 26248000 119 112 122 273;274;275;276 415;416;417;418;419;420 416 6 AAQLCGAGMAAVVDR DSIIVKEVCTVVARRAAQLCGAGMAAVVDR AAQLCGAGMAAVVDRIRENRGLDALKVTVG R A A D R I 5 1 0 1 1 1 0 2 0 0 1 0 1 0 0 0 0 0 0 2 0 0 15 0 1488.7177 Q68E10;E9PB90;A8K2U2;P52789;Q53QX9 Q68E10 802 816 DKFZp686M1669;HK2 Hexokinase;Hexokinase-2 yes no 2 0.0029016 51.875 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 120 714 123 277 421 421 549 1 AAQVLVQELEQYQLLPK YFLIARYLSAGPCRRAAQVLVQELEQYQLL QVLVQELEQYQLLPKRLDWEGNEHNRSYEE R A A P K R 2 0 0 0 0 4 2 0 0 0 4 1 0 0 1 0 0 0 1 2 0 0 17 0 1969.0884 Q9NSI6;A5PLN2 Q9NSI6 34 50 BRWD1 Bromodomain and WD repeat-containing protein 1 yes no 2 3.6122E-34 154.36 2 0.87921 0.90911 1.3888 2 Median 0.87921 0.90911 1.3888 2 0 Median NaN NaN NaN 0 0 Median 29375000 15495000 13880000 29375000 15495000 13880000 0 0 0 121 2068 124 278;279 422;423;424;425 425 4 AAQVTFR RQEMKNPISNKKRKKAAQVTFRKTLEKEAK ISNKKRKKAAQVTFRKTLEKEAKGEEPDIA K A A F R K 2 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 7 0 791.42899 H6QX63;Q6PK04 H6QX63 105 111 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 0.027156 73.975 1 1.3111 1.3413 NaN 1 Median 1.3111 1.3413 NaN 1 0 Median NaN NaN NaN 0 0 Median 32526000 15846000 16680000 32526000 15846000 16680000 0 0 0 122 1307 125 280 426 426 1 AARPPPAASATPTAQPLPQPPAPR EEPRLALSLFRPGGRAARPPPAASATPTAQ ATPTAQPLPQPPAPRAPEGDDFLSLHAESD R A A P R A 7 2 0 0 0 2 0 0 0 0 1 0 0 0 9 1 2 0 0 0 0 0 24 1 2359.2761 A0A024QZH6 A0A024QZH6 416 439 SR-A1 yes yes 3 0.035897 17.025 1 1.0755 1.0738 NaN 1 Median 1.0755 1.0738 NaN 1 0 Median NaN NaN NaN 0 0 Median 8469900 5140100 3329800 8469900 5140100 3329800 0 0 0 123 22 126 281 427 427 1 AASAAFQENVGR ______________________________ CRRAASAAFQENVGRQGTFPHGIDILTTAD R A A G R Q 4 1 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 12 0 1219.5945 I3L0V3;I6L959;B4DE53;J3KR97;Q9BTW9 I3L0V3 15 26 TBCD Tubulin-specific chaperone D yes no 2 3.7048E-07 105.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 124 963 127 282 428 428 1 AASADSTTEGTPADGFTVLSTK KGARKSKKKQGEVSKAASADSTTEGTPADG TEGTPADGFTVLSTKSLFLGQKLNLIHSEI K A A T K S 4 0 0 2 0 0 1 2 0 0 1 1 0 1 1 3 5 0 0 1 0 0 22 0 2126.0015 O75367 O75367 168 189 H2AFY Core histone macro-H2A.1 yes yes 2 1.1078E-137 230.86 7 4 1.0351 1.0455 19.024 9 Median 1.0351 1.2231 8.0011 5 0 Median 1.1769 0.89409 18.014 4 0 Linear 4603800000 2199900000 2403900000 3185900000 1534800000 1651100000 1417900000 665110000 752800000 125 1401 128 283;284;285;286;287;288;289;290;291;292;293 429;430;431;432;433;434;435;436;437;438;439;440;441;442;443;444;445;446;447;448;449;450;451;452;453;454;455 436 27 AASDPLLSSVSPAVSK GVVGGLSGGALSPLRAASDPLLSSVSPAVS ASDPLLSSVSPAVSKASSRRSSFSMEEES_ R A A S K A 3 0 0 1 0 0 0 0 0 0 2 1 0 0 2 5 0 0 0 2 0 0 16 0 1527.8144 B4DIA5;A0A024QZ23;P19532 B4DIA5 441 456 TFE3 Transcription factor E3 yes no 2 0.00040749 50.222 1 1 1.3653 1.2424 40.536 2 Median 1.584 1.6548 NaN 1 0 Median 1.1769 0.93278 NaN 1 0 Median 21502000 8278200 13223000 16729000 6359900 10369000 4772400 1918200 2854200 126 9 129 294;295 456;457;458 457 3 AASGLDHLK ______________________________ ______________________________ M A A L K N 2 0 0 1 0 0 0 1 1 0 2 1 0 0 0 1 0 0 0 0 0 0 9 0 910.48723 Q03188 Q03188 2 10 CENPC Centromere protein C yes yes 2 0.015177 70.332 2 1 0.96551 0.92808 18.511 2 Median 0.72147 0.81422 NaN 1 0 Median 1.2921 1.0579 NaN 1 0 Median 92699000 40080000 52620000 87256000 37621000 49636000 5443000 2459100 2983900 127 1681 130 296;297;298 459;460;461 459 3 AASITSEVFNK TIAVKEDGELNLMKKAASITSEVFNKFFKE LMKKAASITSEVFNKFFKERVMEIVDADEK K A A N K F 2 0 1 0 0 0 1 0 0 1 0 1 0 1 0 2 1 0 0 1 0 0 11 0 1165.5979 Q9Y5B9;Q0VGA3 Q9Y5B9 186 196 SUPT16H FACT complex subunit SPT16 yes no 2 2.8462E-12 138.08 2 2 0.77178 0.82523 8.1694 4 Linear 0.69843 0.82288 0.39229 2 0 Median 0.85618 0.7149 1.4853 2 0 Median 820300000 484410000 335890000 729150000 435810000 293340000 91149000 48602000 42548000 128 2148 131 299;300;301;302 462;463;464;465;466;467;468;469;470;471;472;473 467 12 AASLVIMKSLEIK PECELITSPDHVILRAASLVIMKSLEIKFQ LRAASLVIMKSLEIKFQNYSSASEVKDMEI R A A I K F 2 0 0 0 0 0 1 0 0 2 2 2 1 0 0 2 0 0 0 1 0 0 13 1 1401.8265 S4R3B7;H3BNM9;B4DQT3;A0A024RCC8;Q8NG48 S4R3B7 41 53 LINS;LINS1 Protein Lines homolog yes no 2 0.03427 45.997 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 129 358 132 303 474 474 267 1 AASSSSPGSPVASSPSR SELGACDFEKPESPRAASSSSPGSPVASSP SSSSPGSPVASSPSRLSPTPDGPPPLAQPP R A A S R L 3 1 0 0 0 0 0 1 0 0 0 0 0 0 3 8 0 0 0 1 0 0 17 0 1530.7274 Q92538 Q92538 1776 1792 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes yes 2 0.0057498 49.929 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 130 1947 133 304 475 475 1 AASVHTVGEDTEETPHR LIGPLSHSILTEAIKAASVHTVGEDTEETP SVHTVGEDTEETPHRWWIETCKKPDSVSLH K A A H R W 2 1 0 1 0 0 3 1 2 0 0 0 0 0 1 1 3 0 0 2 0 0 17 0 1834.8446 Q96F88;Q99575 Q96F88 449 465 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2;3 1.227E-106 180.74 3 2 0.41783 0.38873 23.221 4 Median 0.30472 0.30996 14.74 2 0 Median 0.52167 0.44995 3.3966 2 0 Median 65233000 55277000 9956300 56800000 50028000 6771800 8433000 5248500 3184500 131 1965 134 305;306;307;308;309 476;477;478;479;480;481;482;483 479 8 AASVVQPQPLVVVK SPPQQNVQPKKQELRAASVVQPQPLVVVKE RAASVVQPQPLVVVKEEKIHSPIIRSEPFS R A A V K E 2 0 0 0 0 2 0 0 0 0 1 1 0 0 2 1 0 0 0 5 0 0 14 0 1433.8606 O60885 O60885 1098 1111 BRD4 Bromodomain-containing protein 4 yes yes 2 3.7373E-06 101.65 1 0.73266 0.74371 NaN 1 Median 0.73266 0.74371 NaN 1 0 Median NaN NaN NaN 0 0 Median 13549000 7585500 5963400 13549000 7585500 5963400 0 0 0 132 1399 135 310 484;485 484 2 AATAAADFTAK KGAVWGATLNKDATKAATAAADFTAKVWDA DATKAATAAADFTAKVWDAVSGDELMTLAH K A A A K V 6 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 11 0 1036.5189 Q9Y3F4 Q9Y3F4 74 84 STRAP Serine-threonine kinase receptor-associated protein yes yes 2 1.1363E-08 123.63 2 3.0887 3.4568 NaN 1 Median 3.0887 3.4568 NaN 1 0 Median NaN NaN NaN 0 0 Median 117630000 16468000 101160000 117630000 16468000 101160000 0 0 0 133 2136 136 311;312 486;487;488 487 3 AATENIPVVR LLNNVHLSHPVYVRRAATENIPVVRRPDRK VYVRRAATENIPVVRRPDRKDLLGYLNGEA R A A V R R 2 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 10 0 1068.5928 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 78 87 CDC73 Parafibromin yes no 2 0.056162 35.445 1 1.7412 1.4784 NaN 1 Median NaN NaN NaN 0 0 Median 1.7412 1.4784 NaN 1 0 Median 3102400 902660 2199800 0 0 0 3102400 902660 2199800 134 1851 137 313 489 489 1 AATFGLILDDVSLTHLTFGK RELVSRQVSDDLTERAATFGLILDDVSLTH LILDDVSLTHLTFGKEFTEAVEAKQVAQQE R A A G K E 2 0 0 2 0 0 0 2 1 1 4 1 0 2 0 1 3 0 0 1 0 0 20 0 2118.1361 Q6PUJ7;A8K401;P35232;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0 Q6PUJ7 158 177 HEL-S-54e;PHB Prohibitin yes no 3 2.9725E-52 166.91 3 1.6217 1.8255 8.4724 2 Median 1.6217 1.8255 8.4724 2 0 Median NaN NaN NaN 0 0 Median 196260000 72445000 123810000 196260000 72445000 123810000 0 0 0 135 730 138 314;315;316 490;491;492;493;494 492 5 AATILTK FEDDIDFDVYFRKTKAATILTKSTLENQNW DVYFRKTKAATILTKSTLENQNWRATTLPT K A A T K S 2 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 716.44324 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 489 495 NCAPH Condensin complex subunit 2 yes no 1;2 0.020239 104.45 3 0.81877 0.92229 10.158 3 Median 0.81877 0.92229 10.158 3 0 Median NaN NaN NaN 0 0 Median 137800000 75079000 62721000 137800000 75079000 62721000 0 0 0 136 740 139 317;318;319 495;496;497;498 498 4 AATIVATSEGSLWGLDR RGSFGELALMYNTPRAATIVATSEGSLWGL TIVATSEGSLWGLDRVTFRRIIVKNNAKKR R A A D R V 3 1 0 1 0 0 1 2 0 1 2 0 0 0 0 2 2 1 0 1 0 0 17 0 1745.8948 A0A0S2Z472;A8KAH7;A0A024R2W3;P13861;H7C1L0 A0A0S2Z472 218 234 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 0.0057359 49.448 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2040100 2040100 0 2040100 2040100 0 0 0 0 137 124 140 320 499 499 1 AATMTAAGHHAEVVVDPEDER DGSDDEDEEWPTLEKAATMTAAGHHAEVVV AGHHAEVVVDPEDERAIEMFMNKNPPARRT K A A E R A 5 1 0 2 0 0 3 1 2 0 0 0 1 0 1 0 2 0 0 3 0 0 21 0 2205.012 Q13895;F8WBL2 Q13895 111 131 BYSL Bystin yes no 3 3.7559E-09 81.144 1 1 1.5038 1.5511 NaN 1 Median 1.5038 1.5511 NaN 1 0 Median NaN NaN NaN 0 0 Median 14851000 7448600 7402100 14019000 6617200 7402100 831440 831440 0 138 1724 141;142 321;322 500;501 500 1560 2 AATSPALFNR VVFTMNPSSEGLKDRAATSPALFNRCVLNW GLKDRAATSPALFNRCVLNWFGDWSTEALY R A A N R C 3 1 1 0 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 10 0 1046.5509 Q14204 Q14204 3079 3088 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00076782 81.548 1 2.939 2.9864 NaN 1 Median 2.939 2.9864 NaN 1 0 Median NaN NaN NaN 0 0 Median 20400000 6611700 13788000 20400000 6611700 13788000 0 0 0 139 1729 143 323 502;503 503 2 AATYMIICQISVK PYIQKGLKSSLPDYRAATYMIICQISVKVT YRAATYMIICQISVKVTMENTFVNSLASQI R A A V K V 2 0 0 0 1 1 0 0 0 3 0 1 1 0 0 1 1 0 1 1 0 0 13 0 1496.7731 B2RWN5;Q9H583;Q5T3Q7 B2RWN5 259 271 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.014095 44.188 1 1.4489 1.2328 NaN 1 Median NaN NaN NaN 0 0 Median 1.4489 1.2328 NaN 1 0 Median 1158200 573130 585110 0 0 0 1158200 573130 585110 140 897 144 324 504 504 1 AAVATFLQSVQVPEFTPK NLFAQTYGLTGSQDRAAVATFLQSVQVPEF ATFLQSVQVPEFTPKSGVKIHVSDQELQSA R A A P K S 3 0 0 0 0 2 1 0 0 0 1 1 0 2 2 1 2 0 0 3 0 0 18 0 1932.0357 A0A024R1A3;P22314;B4DDE4;B4DL67;Q5JRR6;B3KUJ2 A0A024R1A3 785 802 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 9.285E-06 80.522 2 2.4249 2.5389 0.16824 2 Median 2.4249 2.5389 0.16824 2 0 Median NaN NaN NaN 0 0 Median 35494000 10687000 24807000 35494000 10687000 24807000 0 0 0 141 74 145 325;326 505;506;507;508 506 4 AAVELEEPEDAR RKALEHVPNSVRLWKAAVELEEPEDARIML LWKAAVELEEPEDARIMLSRAVECCPTSVE K A A A R I 3 1 0 1 0 0 4 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1327.6256 O94906 O94906 409 420 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 1.7055E-08 121.5 1 1 0.92616 1.0288 NaN 1 Median 0.92616 1.0288 NaN 1 0 Median NaN NaN NaN 0 0 Median 74506000 38353000 36152000 71913000 35761000 36152000 2592300 2592300 0 142 1418 146 327;328 509;510 509 2 AAVELPR IRKRNYVRDDAVFIRAAVELPRKILS____ RDDAVFIRAAVELPRKILS___________ R A A P R K 2 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 7 0 754.43374 A0A024QZ59;Q9BUZ4;A0A024QZ19;Q2KJU6;Q2KJU5;Q2KJU3;A0A0C4DFM9 A0A024QZ59 460 466 TRAF4 TNF receptor-associated factor 4 yes no 2 0.031834 73.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3559400 0 3559400 3559400 0 3559400 0 0 0 143 11 147 329 511 511 1 AAVENLPTFLVELSR PDRLELEAAQKFLERAAVENLPTFLVELSR AAVENLPTFLVELSRVLANPGNSQVARVAA R A A S R V 2 1 1 0 0 0 2 0 0 0 3 0 0 1 1 1 1 0 0 2 0 0 15 0 1657.9039 B2RBR9;Q14974;J3QR48 B2RBR9 28 42 KPNB1 Importin subunit beta-1 yes no 2 1.4539E-07 109.72 2 1.7943 1.8373 3.2312 2 Median 1.7943 1.8373 3.2312 2 0 Median NaN NaN NaN 0 0 Median 39702000 14457000 25245000 39702000 14457000 25245000 0 0 0 144 880 148 330;331 512;513;514;515 515 4 AAVESLGFILFR LLHVAVSDVNDDVRRAAVESLGFILFRTPE VRRAAVESLGFILFRTPEQCPSVVSLLSES R A A F R T 2 1 0 0 0 0 1 1 0 1 2 0 0 2 0 1 0 0 0 1 0 0 12 0 1321.7394 B2R6D0;A0A087WW66;Q99460;H7C378;Q05BX4;Q05CW6 B2R6D0 617 628 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 2.3377E-08 111.61 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5245700 0 5245700 5245700 0 5245700 0 0 0 145 424 149 332;333;334 516;517;518 516 3 AAVGQESPGGLEAGNAK KNDDLNKPINKGRKRAAVGQESPGGLEAGN VGQESPGGLEAGNAKAPKLQDLAKKAAPAE R A A A K A 4 0 1 0 0 1 2 4 0 0 1 1 0 0 1 1 0 0 0 1 0 0 17 0 1554.7638 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1299 1315 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 3.5299E-06 87.001 2 0.6697 0.67709 NaN 1 Median 0.6697 0.67709 NaN 1 0 Median NaN NaN NaN 0 0 Median 6871800 3015500 3856300 6871800 3015500 3856300 0 0 0 146 1270 150 335;336 519;520;521 519 3 AAVIGDVIR ITVEHLAIKCHWTQRAAVIGDVIRVYSGHQ CHWTQRAAVIGDVIRVYSGHQGRTIIFCET R A A I R V 2 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 2 0 0 9 0 912.53927 Q9NR30 Q9NR30 424 432 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.0020622 77.282 2 2 1.0893 1.0795 11.904 4 Median 1.0392 1.1992 1.6156 2 0 Median 1.1378 0.97655 0.91762 2 0 Median 438040000 221890000 216150000 380570000 195010000 185560000 57469000 26885000 30584000 147 2065 151 337;338;339;340 522;523;524;525 522 4 AAVIGPDVFAK DPKANKGHSVEEALRAAVIGPDVFAKLLSA EALRAAVIGPDVFAKLLSAERAVTGYTDPY R A A A K L 3 0 0 1 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 2 0 0 11 0 1086.6073 A0A075B730;A0A087X1U6;P58107 A0A075B730 645 655 EPPK1 Epiplakin no no 2 0.0058056 55.549 1 1 2.0451 1.9101 15.317 2 Median 1.5943 1.714 NaN 1 0 Median 2.6233 2.1286 NaN 1 0 Median 40389000 16459000 23930000 37560000 15722000 21838000 2828800 736590 2092300 148 397;1622 152 341;342 526;527 526 2 AAVLFATDIAAR QMRRMEVYNEFVRKRAAVLFATDIAARGLD RKRAAVLFATDIAARGLDFPAVNWVLQFDC R A A A R G 5 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1217.6768 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 366 377 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.0066597 59.931 2 1 0.81087 0.67739 NaN 1 Median NaN NaN NaN 0 0 Median 0.81087 0.67739 NaN 1 0 Median 22457000 1567800 20889000 19148000 0 19148000 3308800 1567800 1741000 149 1708 153 343;344;345 528;529;530 529 3 AAVLLEQER DHSLKEHELLEQQKRAAVLLEQERQQEIAK LEQQKRAAVLLEQERQQEIAKMGTPVPRPP R A A E R Q 2 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1027.5662 Q13435;Q7Z3K9;E9PJ04;H0YCG1;E9PJT3 Q13435 184 192 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 2 0.035184 51.346 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 150 1713 154 346 531 531 1 AAVLYVMDLSEQCGHGLR NTIEMQAITALAHLRAAVLYVMDLSEQCGH LYVMDLSEQCGHGLREQLELFQNIRPLFIN R A A L R E 2 1 0 1 1 1 1 2 1 0 3 0 1 0 0 1 0 0 1 2 0 0 18 0 2017.9714 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 247 264 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 1.0788E-05 60.307 3 1.5104 1.6722 20.907 3 Median 1.5104 1.6722 20.907 3 0 Median NaN NaN NaN 0 0 Median 83265000 35069000 48196000 83265000 35069000 48196000 0 0 0 151 1183 155 347;348;349 532;533;534 534 893 3 AAVQFLNNAWGIQK NKFLSLANKRLPVKRAAVQFLNNAWGIQKK RAAVQFLNNAWGIQKKQNAKRFKRRWMVRK R A A Q K K 3 0 2 0 0 2 0 1 0 1 1 1 0 1 0 0 0 1 0 1 0 0 14 0 1558.8256 A0A024QZW2;Q9UMY1 A0A024QZW2 224 237 NOL7 Nucleolar protein 7 yes no 2 6.4527E-10 122.96 2 2 0.82289 0.77445 7.6895 4 Median 0.68965 0.73091 7.8709 2 0 Median 0.99633 0.80394 4.9749 2 0 Median 89298000 52152000 37146000 73431000 43958000 29473000 15868000 8194500 7673200 152 30 156 350;351;352;353 535;536;537;538 536 4 AAVTSLFAK LATTQTDTMLSAEEKAAVTSLFAKVKVDEV LSAEEKAAVTSLFAKVKVDEVGGEALGRLL K A A A K V 3 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 9 0 906.51747 CON__Q3SX09 CON__Q3SX09 64 72 yes yes 2 0.0021498 82.241 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75014000 75014000 0 75014000 75014000 0 0 0 0 + 153 1172 157 354;355 539;540 540 2 AAVWEITGAEFSK NKIYYPDFIVPDPKKAAVWEITGAEFSKSE KKAAVWEITGAEFSKSEAHTADGISIRFPR K A A S K S 3 0 0 0 0 0 2 1 0 1 0 1 0 1 0 1 1 1 0 1 0 0 13 0 1407.7034 P49916;B7Z6I3 P49916 779 791 LIG3 DNA ligase 3;DNA ligase yes no 2 0.00011207 77.062 2 1 0.56008 0.58284 27.304 3 Median 0.50413 0.52383 15.096 2 0 Median 1.037 0.80952 NaN 1 0 Median 27450000 16203000 11247000 23660000 14506000 9153400 3790300 1697000 2093300 154 1589 158 356;357;358 541;542;543;544;545 544 5 AAWEAYLSR ISAADRLEAAEMYRKAAWEAYLSRLGV___ AEMYRKAAWEAYLSRLGV____________ K A A S R L 3 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 9 0 1065.5243 A8K5J1;P11172;B5LY69;B5LY70;B5LY64 A8K5J1 469 477 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase;Orotidine 5-phosphate decarboxylase yes no 2 0.0040489 69.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 155 749 159 359 546 546 1 AAYEAELGDAR TESEEVVSREVSGIKAAYEAELGDARKTLD SGIKAAYEAELGDARKTLDSVAKERARLQL K A A A R K 4 1 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1164.5411 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;W5X314 P02545 79 89 LMNA Prelamin-A/C;Lamin-A/C yes no 2 7.9598E-08 112.71 2 2 1.2638 1.2474 11.08 4 Median 1.1658 1.3527 0.95589 2 0 Median 1.3739 1.1225 4.4158 2 0 Median 466140000 219140000 247000000 440320000 208520000 231800000 25824000 10622000 15201000 156 1440 160 360;361;362;363 547;548;549;550;551;552;553 547 7 AAYEAELGDARK TESEEVVSREVSGIKAAYEAELGDARKTLD GIKAAYEAELGDARKTLDSVAKERARLQLE K A A R K T 4 1 0 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1292.6361 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;W5X314 P02545 79 90 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 4.4474E-20 143.89 3 4 1.3429 1.3275 13.809 4 Median 1.2618 1.483 8.9229 2 0 Median 1.4195 1.2024 7.2484 2 0 Median 149860000 44579000 105280000 118160000 37450000 80707000 31699000 7129500 24570000 157 1440 161 364;365;366;367;368;369;370 554;555;556;557;558;559;560;561;562;563 555 10 AAYLNMSEDPSHPSMALNTR KLLEQALVIEEQLRRAAYLNMSEDPSHPSM MSEDPSHPSMALNTRFAEVECLAESHQHLS R A A T R F 3 1 2 1 0 0 1 0 1 0 2 0 2 0 2 3 1 0 1 0 0 0 20 0 2203.999 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1795 1814 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 1.3951E-06 62.002 2 1.2364 1.3489 2.6196 2 Median 1.2364 1.3489 2.6196 2 0 Median NaN NaN NaN 0 0 Median 93482000 38973000 54509000 93482000 38973000 54509000 0 0 0 158 515 162 371;372 564;565;566 566 362;363 3 AAYLSDPR TLKDLLLNTMSQEEKAAYLSDPRAPPCEYK TMSQEEKAAYLSDPRAPPCEYKDWLTKMSG K A A P R A 2 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 8 0 891.44503 P78527 P78527 3826 3833 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.030565 58.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3497300 3497300 0 0 0 0 3497300 3497300 0 159 1665 163 373 567 567 1 AAYPDLENPPLLVTPSQQAK NIISRLQEVFGHAIKAAYPDLENPPLLVTP LENPPLLVTPSQQAKFGDYQCNSAMGISQM K A A A K F 3 0 1 1 0 2 1 0 0 0 3 1 0 0 4 1 1 0 1 1 0 0 20 0 2151.1212 P54136;E5RJM9 P54136 90 109 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.0004921 36.445 1 2 1.0072 0.80204 40.003 3 Median 1.6006 1.5689 NaN 1 0 Median 0.97571 0.78541 2.9637 2 0 Median 34805000 16096000 18709000 20915000 8326500 12588000 13890000 7769100 6121100 160 1609 164 374;375;376 568;569;570;571;572 568 5 ACARPLISVYSEK ______________________________ ______________________________ M A C E K G 2 1 0 0 1 0 1 0 0 1 1 1 0 0 1 2 0 0 1 1 0 0 13 1 1492.7708 P36578;B4DMJ6;B4DFI6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 2 14 RPL4 60S ribosomal protein L4 yes no 2 0.001887 56.936 1 1.2166 1.0065 NaN 1 Median NaN NaN NaN 0 0 Median 1.2166 1.0065 NaN 1 0 Median 3971700 1568600 2403100 0 0 0 3971700 1568600 2403100 161 1548 165 377 573;574 574 2 ACAVETSVDLSEISSK GKVIGLQIFNIDTDRACAVETSVDLSEISS CAVETSVDLSEISSKLGSTQSGFLVEESLP R A C S K L 2 0 0 1 1 0 2 0 0 1 1 1 0 0 0 4 1 0 0 2 0 0 16 0 1694.8033 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 219 234 CDCA2 Cell division cycle-associated protein 2 yes no 2 1.4847E-08 104.24 1 1 0.80636 0.73006 31.819 2 Median 0.57131 0.58297 NaN 1 0 Median 1.1381 0.91427 NaN 1 0 Median 33531000 17575000 15956000 17858000 11551000 6307500 15673000 6024200 9648700 162 1233 166 378;379 575;576;577;578;579 576 5 ACFCLLEGDK ADKIIMYDQNHLLGRACFCLLEGDKMDQAD HLLGRACFCLLEGDKMDQADAQFHFVLNQS R A C D K M 1 0 0 1 2 0 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 10 0 1211.5315 A8K6X9;Q6PD62;H0YCE8 A8K6X9 135 144 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.043564 37.344 1 1.6951 1.7278 NaN 1 Median 1.6951 1.7278 NaN 1 0 Median NaN NaN NaN 0 0 Median 10400000 4170800 6229400 10400000 4170800 6229400 0 0 0 163 765 167 380 580 580 1 ACFSANGEEVLATSTHSK PKIQSIYLERFPIFKACFSANGEEVLATST SANGEEVLATSTHSKVLYVYDMLAGKLIPV K A C S K V 3 0 1 0 1 0 2 1 1 0 1 1 0 1 0 3 2 0 0 1 0 0 18 0 1907.8683 B2RAX6;Q9Y5J1;J3KSR7 B2RAX6 277 294 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 6.5946E-23 132.13 2 2 1.0592 1.0027 14.161 4 Median 0.80251 0.88445 4.1659 2 0 Median 1.4056 1.1246 2.6463 2 0 Median 150120000 81291000 68831000 114170000 66194000 47976000 35953000 15097000 20855000 164 876 168 381;382;383;384 581;582;583;584;585;586;587;588 584 8 ACGDSTLTQITAGLDPVGR QEAEQLRNQIRDARKACGDSTLTQITAGLD STLTQITAGLDPVGRIQMRTRRTLRGHLAK K A C G R I 2 1 0 2 1 1 0 3 0 1 2 0 0 0 1 1 3 0 0 1 0 0 19 0 1930.9418 C9JIS1;C9JXA5;Q6FHM2;P62879;C9JZN1 C9JIS1 24 42 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes no 2 0.00045503 40.941 2 1.4133 1.1815 NaN 1 Median NaN NaN NaN 0 0 Median 1.4133 1.1815 NaN 1 0 Median 4841900 1591700 3250200 0 0 0 4841900 1591700 3250200 165 1135 169 385;386 589;590 589 2 ACGGPGNFCPSFSELQR PNSQPPPEVYVSLIKACGGPGNFCPSFSEL GGPGNFCPSFSELQRNFVKHRPTKLKSLLR K A C Q R N 1 1 1 0 2 1 1 3 0 0 1 0 0 2 2 2 0 0 0 0 0 0 17 0 1882.8091 B3KN79;Q15646;H0YGP3 B3KN79 180 196 OASL 2-5-oligoadenylate synthase-like protein yes no 2 0.021631 31.228 1 0.9418 0.81487 NaN 1 Median NaN NaN NaN 0 0 Median 0.9418 0.81487 NaN 1 0 Median 2608200 1446500 1161700 0 0 0 2608200 1446500 1161700 166 911 170 387 591 591 1 ACGLVASNLNLKPGECLR ______________________________ LVASNLNLKPGECLRVRGEVAPDAKSFVLN M A C L R V 2 1 2 0 2 0 1 2 0 0 4 1 0 0 1 1 0 0 0 1 0 0 18 1 1971.003 P09382;F8WEI7 P09382 2 19 LGALS1 Galectin-1 yes no 2 4.7242E-06 69.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3371300 0 3371300 0 0 0 3371300 0 3371300 167 1460 171 388 592 592 1 ACGNFGIPCELR MGSTSDLGHCEKIKKACGNFGIPCELRVTS IKKACGNFGIPCELRVTSAHKGPDETLRIK K A C L R V 1 1 1 0 2 0 1 2 0 1 1 0 0 1 1 0 0 0 0 0 0 0 12 0 1392.6278 E9PBS1;A0A024RD93;P22234;D6RF62 E9PBS1 287 298 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.0057331 50.194 1 1.0144 1.0656 NaN 1 Median 1.0144 1.0656 NaN 1 0 Median NaN NaN NaN 0 0 Median 11193000 6430800 4762300 11193000 6430800 4762300 0 0 0 168 380 172 389 593 593 1 ACGVSRPVIACSVTIK NVPYVFVRSKQALGRACGVSRPVIACSVTI CGVSRPVIACSVTIKEGSQLKQQIQSIQQS R A C I K E 2 1 0 0 2 0 0 1 0 2 0 1 0 0 1 2 1 0 0 3 0 0 16 1 1716.9015 Q6FHM6;B1AHD1;P55769 Q6FHM6 92 107 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2;3 1.6805E-06 70.96 2 3 0.77633 0.78468 10.582 5 Median 0.68336 0.8125 0.64228 2 0 Median 0.85427 0.74123 10.232 3 0 Plateau 238920000 133860000 105070000 151210000 87683000 63530000 87710000 46173000 41537000 169 812 173 390;391;392;393;394 594;595;596;597;598;599;600;601;602 598 9 ACILCVHPR DPKKAGTYFSNQAVRACILCVHPRTRVVHL SNQAVRACILCVHPRTRVVHLSLRPIFLQP R A C P R T 1 1 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1124.5583 Q14690;B4DH82;B4DES7 Q14690 329 337 PDCD11 Protein RRP5 homolog yes no 2;3 0.023473 43.246 1 1 1.0017 0.95886 9.0408 2 Median 1.0074 1.0222 NaN 1 0 Median 0.9961 0.89948 NaN 1 0 Median 30973000 14454000 16519000 28873000 13438000 15436000 2099700 1016500 1083200 170 1741 174 395;396 603;604 603 2 ACIPVGLLGK AITAMGFKQPTPIQKACIPVGLLGKDICAC TPIQKACIPVGLLGKDICACAATGTGKTAA K A C G K D 1 0 0 0 1 0 0 2 0 1 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1026.5896 B3GQE6;A0A087X059;B7Z6D5;Q96GQ7 B3GQE6 216 225 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.0088374 55.531 1 0.73368 0.75758 NaN 1 Median 0.73368 0.75758 NaN 1 0 Median NaN NaN NaN 0 0 Median 29070000 16803000 12267000 29070000 16803000 12267000 0 0 0 171 899;1099 175 397 605;606 606 2 ACLDTAVENMPSLK EDPLLSGLLDSPALKACLDTAVENMPSLKM KACLDTAVENMPSLKMKVVLAGHGHLYSRI K A C L K M 2 0 1 1 1 0 1 0 0 0 2 1 1 0 1 1 1 0 0 1 0 0 14 0 1547.7324 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1226 1239 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0011516 62.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 172 587 176 398 607 607 437 1 ACLWGTGCVAGVLLQPSGAK GTQSPAQVAEQPAVKACLWGTGCVAGVLLQ TGCVAGVLLQPSGAKASIAQAVRDGLLPTG K A C A K A 3 0 0 0 2 1 0 4 0 0 3 1 0 0 1 1 1 1 0 2 0 0 20 0 2044.0234 A0A075B730;A0A087X1U6;P58107 A0A075B730 1215 1234 EPPK1 Epiplakin no no 2 1.0561E-06 68.034 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4439000 0 4439000 4439000 0 4439000 0 0 0 173 397;1622 177 399;400 608;609;610;611 611 4 ACMLTTATAHDGDVNVISWSR DASIRIWDIRAAPSKACMLTTATAHDGDVN ATAHDGDVNVISWSRREPFLLSGGDDGALK K A C S R R 3 1 1 2 1 0 0 1 1 1 1 0 1 0 0 2 3 1 0 2 0 0 21 0 2304.0627 Q8NCK5;Q9BQ67;B4DTI1;M0QX71 Q8NCK5 298 318 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 3 1.5162E-05 42.711 1 0.79431 0.8288 NaN 1 Median 0.79431 0.8288 NaN 1 0 Median NaN NaN NaN 0 0 Median 10547000 4223100 6324300 10547000 4223100 6324300 0 0 0 174 1922 178 401 612 612 1751 1 ACPRPEGLNFQDLK NGLTVAQNQVLNLIKACPRPEGLNFQDLKN KACPRPEGLNFQDLKNQLKHMSVSSIKQAV K A C L K N 1 1 1 1 1 1 1 1 0 0 2 1 0 1 2 0 0 0 0 0 0 0 14 1 1643.809 B2R7E8;P15927;B4DQD9;B4DL94;Q5TEJ0;B4DUL2 B2R7E8 218 231 RPA2 Replication protein A 32 kDa subunit yes no 3 0.024638 24.53 1 0.32546 0.26977 NaN 1 Median NaN NaN NaN 0 0 Median 0.32546 0.26977 NaN 1 0 Median 3839700 2969100 870590 0 0 0 3839700 2969100 870590 175 850 179 402 613 613 1 ACQIFVR SFGGAGGHAPGVARKACQIFVRNLPFDFTW HAPGVARKACQIFVRNLPFDFTWKMLKDKF K A C V R N 1 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 892.45891 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96 P52272 652 658 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.022924 91.584 2 2 1.1267 1.134 38.43 4 Median 1.3573 1.5423 1.3389 2 0 Median 0.92191 0.79642 7.8254 2 0 Median 189940000 77979000 111960000 181370000 73274000 108090000 8576900 4705800 3871000 176 1599 180 403;404;405;406 614;615;616;617 614 4 ACQSIYPLHDVFVR VNKLIPDSIGKDIEKACQSIYPLHDVFVRK KACQSIYPLHDVFVRKVKMLKKPKFELGKL K A C V R K 1 1 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 2 0 0 14 0 1703.8454 Q6NXR8;A8K4W0;P61247;D6RG13;D6RAT0;D6RB09;H0Y9Y4;D6R9B6 Q6NXR8 200 213 RPS3A 40S ribosomal protein S3a yes no 2;3 9.301E-07 103.76 6 3 0.83991 0.82773 15.948 6 Median 0.80144 0.91414 11.035 3 0 Median 0.84043 0.75078 3.2932 3 0 Plateau 398500000 229140000 169350000 317880000 184820000 133060000 80614000 44323000 36290000 177 742 181 407;408;409;410;411;412;413;414;415 618;619;620;621;622;623;624;625;626;627;628;629;630;631 619 14 ACTQLVDNLVEHILK LLKSEEDSSYKPVKKACTQLVDNLVEHILK ACTQLVDNLVEHILKYEESLADSDNKGVNS K A C L K Y 1 0 1 1 1 1 1 0 1 1 3 1 0 0 0 0 1 0 0 2 0 0 15 0 1751.924 Q6IEH8;Q6KC79 Q6IEH8 1970 1984 NIPBL Nipped-B-like protein yes no 3 0.00082233 44.252 1 0.63131 0.51487 NaN 1 Median NaN NaN NaN 0 0 Median 0.63131 0.51487 NaN 1 0 Median 5785000 3681300 2103700 0 0 0 5785000 3681300 2103700 178 1843 182 416 632 632 1 ACVCQTLGISPEEK RPLQVGERSDYAGFRACVCQTLGISPEEKF RACVCQTLGISPEEKFVITTTSRKEITCDN R A C E K F 1 0 0 0 2 1 2 1 0 1 1 1 0 0 1 1 1 0 0 1 0 0 14 0 1590.7382 A6NHR9 A6NHR9 58 71 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0011912 55.452 2 2 1.4617 1.1437 9.5229 3 Median 0.98554 0.991 NaN 1 0 Median 1.4645 1.1651 2.6118 2 0 Median 13524000 7402600 6121200 7343100 4495300 2847900 6180700 2907400 3273400 179 684 183 417;418;419;420 633;634;635;636;637;638 637 6 ACVQGECGVCHYCR VSGARRRRVRCRKCKACVQGECGVCHYCRD KACVQGECGVCHYCRDMKKFGGPGRMKQSC K A C C R D 1 1 0 0 4 1 1 2 1 0 0 0 0 0 0 0 0 0 1 2 0 0 14 0 1754.6745 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 559 572 KDM2A Lysine-specific demethylase 2A yes no 2;3 5.3716E-06 88.681 3 0.58981 0.59047 24.077 3 Median 0.58981 0.59047 24.077 3 0 Median NaN NaN NaN 0 0 Median 25424000 16694000 8729600 25424000 16694000 8729600 0 0 0 180 1323 184 421;422;423 639;640;641;642;643 639 5 ADAEVIILPK ______________________________ ______________________________ M A D P K K 2 0 0 1 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1067.6227 O60832;C9IYT0;U5UA77;U5U7S7;U5U768 O60832 2 11 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 1;2 2.4216E-05 90.657 3 0.88039 0.9594 6.8234 2 Median 0.88039 0.9594 6.8234 2 0 Median NaN NaN NaN 0 0 Median 48867000 27256000 21610000 48867000 27256000 21610000 0 0 0 181 1398 185 424;425;426 644;645;646 646 3 ADALQLSVEEFVER SFSLSPAAVADNVERADALQLSVEEFVERY RADALQLSVEEFVERYERPYKPVVLLNAQE R A D E R Y 2 1 0 1 0 1 3 0 0 0 2 0 0 1 0 1 0 0 0 2 0 0 14 0 1604.8046 B2WTI3;B2WTI4;K7EJU9;A0A0S2PZM4;Q6NYC1 B2WTI3 49 62 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 yes no 2 0.0077167 58.172 1 2 1.3647 1.2709 29.994 2 Median 1.5693 1.5711 NaN 1 0 Median 1.1868 1.028 NaN 1 0 Median 10970000 4254200 6715800 8993000 3378800 5614200 1977000 875410 1101600 182 543 186 427;428;429 647;648;649;650 647 3 ADAQLLLHNTVIFYGADSEQADIAR EKVNEGKYRSYEEFKADAQLLLHNTVIFYG VIFYGADSEQADIARMLYKDTCHELDELQL K A D A R M 5 1 1 3 0 2 1 1 1 2 3 0 0 1 0 1 1 0 1 1 0 0 25 0 2730.3613 Q15326;E7ENI9;J3QKD2;Q5BJG6;B7Z3W2;B0QZE2;Q6PJR5;A0A0A0MRY2 Q15326 218 242 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 5.447E-10 59.912 2 1.8623 1.5549 12.322 2 Median NaN NaN NaN 0 0 Median 1.8623 1.5549 12.322 2 0 Median 18457000 6875000 11582000 0 0 0 18457000 6875000 11582000 183 1758 187 430;431 651;652;653;654 654 4 ADAVQDSEMVELVELEIR ARQIGVEHVVVYVNKADAVQDSEMVELVEL VQDSEMVELVELEIRELLTEFGYKGEETPV K A D I R E 2 1 0 2 0 1 4 0 0 1 2 0 1 0 0 1 0 0 0 3 0 0 18 0 2044.9987 P49411 P49411 183 200 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.0015509 52.555 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 184 1580 188 432 655 655 1357 1 ADDADEFGYSR AKSARLNLWRYGDFRADDADEFGYSR____ GDFRADDADEFGYSR_______________ R A D S R - 2 1 0 3 0 0 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 11 0 1244.4946 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299 A0A140VK49 900 910 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 4.4729E-10 130.94 2 2 1.3303 1.8355 38.796 4 Linear 1.6509 1.8113 0.55884 2 0 Median 1.0679 0.92529 1.8904 2 0 Median 95287000 38828000 56459000 90521000 36478000 54042000 4766500 2350300 2416200 185 618 189 433;434;435;436 656;657;658;659;660 656 5 ADDLLPLGDQTQDGDFGSR RVKKIRKKEKEVVVRADDLLPLGDQTQDGD LPLGDQTQDGDFGSRLRGRGRRRVSEVEEE R A D S R L 1 1 0 5 0 2 0 3 0 0 3 0 0 1 1 1 1 0 0 0 0 0 19 0 2018.9181 O43290;B4DDH9;B4DP43 O43290 420 438 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 0.030042 32.734 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7753300 7753300 0 7753300 7753300 0 0 0 0 186 1384 190 437 661 661 1 ADEASELACPTPK VRQLTLRKLQELSSKADEASELACPTPKED SKADEASELACPTPKEDGLAQQQTQLNLRS K A D P K E 3 0 0 1 1 0 2 0 0 0 1 1 0 0 2 1 1 0 0 0 0 0 13 0 1387.6289 A0A0U1RQF0;P49327 A0A0U1RQF0 2192 2204 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 3.1522E-30 168.22 2 1 1.7492 1.799 46.215 3 Plateau 1.7441 1.8235 1.9109 2 0 Median 1.012 0.81923 NaN 1 0 Median 36627000 13593000 23035000 34042000 12404000 21638000 2585800 1188900 1396900 187 587 191 438;439;440 662;663;664;665;666;667;668 665 7 ADEAYLIGR AIYSEQDTGQMHRQKADEAYLIGRGLAPVQ QMHRQKADEAYLIGRGLAPVQAYLHIPDII K A D G R G 2 1 0 1 0 0 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 9 0 1006.5084 A0A024R5C5;P11498;E9PRE7 A0A024R5C5 80 88 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 0.0017345 81.548 3 1.6302 1.6192 NaN 1 Median 1.6302 1.6192 NaN 1 0 Median NaN NaN NaN 0 0 Median 7312000 2847800 4464300 7312000 2847800 4464300 0 0 0 188 176 192 441;442;443 669;670;671 671 3 ADEGISFR SDPKRTIAQDYGVLKADEGISFRGLFIIDD QDYGVLKADEGISFRGLFIIDDKGILRQIT K A D F R G 1 1 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 8 0 893.4243 Q06830;A0A0A0MSI0;B2R4P2 Q06830 121 128 PRDX1 Peroxiredoxin-1 yes no 2 0.0092293 75.213 2 2 2.7831 2.7139 27.055 4 Median 2.9771 3.4098 4.5549 2 0 Median 2.5374 2.1458 5.4888 2 0 Median 271370000 63819000 207550000 260400000 60874000 199520000 10975000 2944600 8030900 189 1690 193 444;445;446;447 672;673;674;675;676;677 674 6 ADEPSSEESDLEIDK KEEKPDSKKVEEDLKADEPSSEESDLEIDK ADEPSSEESDLEIDKEGVIEPDTDAPQEMG K A D D K E 1 0 0 3 0 0 4 0 0 1 1 1 0 0 1 3 0 0 0 0 0 0 15 0 1662.7108 Q1XBU7;F6VDH7;Q3KNR6;Q0IJ56;B4E0U6;A0A140VKA6;Q8IZP2;P50502 Q1XBU7 71 85 ST13;ST13P4 Putative protein FAM10A4;Hsc70-interacting protein yes no 2 0.0013359 61.11 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 190 622 194 448 678 678 1 ADEWLMK ADFCIIHYAGKVDYKADEWLMKNMDPLNDN YAGKVDYKADEWLMKNMDPLNDNIATLLHQ K A D M K N 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 7 0 891.41604 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;P35580 A0A024R1N1 581 587 MYH9;MYH10 Myosin-9;Myosin-10 no no 2 0.02298 49.358 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11815000 0 11815000 11815000 0 11815000 0 0 0 191 81;1544 195 449 679 679 50 1 ADFAQACQDAGVR NVDAVHPGYGFLSERADFAQACQDAGVRFI ERADFAQACQDAGVRFIGPSPEVVRKMGDK R A D V R F 4 1 0 2 1 2 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 13 0 1407.6201 A0A024R5C5;P11498;E9PRE7 A0A024R5C5 125 137 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 0.00077554 79.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4932300 0 4932300 4932300 0 4932300 0 0 0 192 176 196 450 680 680 1 ADFCIIHYAGK GTHPKFQKPKQLKDKADFCIIHYAGKVDYK LKDKADFCIIHYAGKVDYKADEWLMKNMDP K A D G K V 2 0 0 1 1 0 0 1 1 2 0 1 0 1 0 0 0 0 1 0 0 0 11 0 1293.6176 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;P35580 A0A024R1N1 566 576 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.0083573 40.994 1 1 2.0753 1.8817 19.098 2 Median 1.6376 1.644 NaN 1 0 Median 2.6299 2.1537 NaN 1 0 Median 18654000 7886500 10767000 13722000 6314800 7406800 4932300 1571700 3360600 193 81;1544 197 451;452 681;682 681 2 ADFFEDENGQR QSVTMGYYKNEAKTKADFFEDENGQRWLCT AKTKADFFEDENGQRWLCTGDIGEFEPDGC K A D Q R W 1 1 1 2 0 1 2 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 11 0 1326.5477 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6 B3KN05 537 547 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.00041586 80.231 2 1.1918 1.2587 1.76 2 Median 1.1918 1.2587 1.76 2 0 Median NaN NaN NaN 0 0 Median 51754000 25811000 25943000 51754000 25811000 25943000 0 0 0 194 150 198 453;454 683;684 684 2 ADFPAGIPECGTDALR NLDPSEVEKAKEGQKADFPAGIPECGTDAL DFPAGIPECGTDALRFGLCAYMSQGRDINL K A D L R F 3 1 0 2 1 0 1 2 0 1 1 0 0 1 2 0 1 0 0 0 0 0 16 0 1688.7828 A0A024RCN6;P26640;A0A140T936;B4DT32;H0Y426 A0A024RCN6 908 923 VARS Valine--tRNA ligase yes no 2 0.0014219 45.257 2 1 0.67792 0.69482 34.404 3 Median 0.80744 0.83515 26.016 2 0 Median 0.60139 0.50475 NaN 1 0 Median 37433000 23083000 14350000 34302000 21485000 12817000 3131500 1597900 1533600 195 363 199 455;456;457 685;686;687;688;689 686 5 ADFTVVAGDEGSSTTGGSSEENK NLPQLKELYQLSKEKADFTVVAGDEGSSTT DEGSSTTGGSSEENKGPSGSAVSRKAPSKP K A D N K G 2 0 1 2 0 0 3 4 0 0 0 1 0 1 0 4 3 0 0 2 0 0 23 0 2243.9666 P49916;B7Z6I3 P49916 836 858 LIG3 DNA ligase 3;DNA ligase yes no 2 3.6214E-30 135.47 2 0.54452 0.57274 6.9682 2 Median 0.54452 0.57274 6.9682 2 0 Median NaN NaN NaN 0 0 Median 40567000 23772000 16796000 40567000 23772000 16796000 0 0 0 196 1589 200 458;459 690;691;692;693;694;695;696 693 7 ADFVLAANSYDLAIK LANRKRECGNAHYQRADFVLAANSYDLAIK ADFVLAANSYDLAIKAITSSAKVDMTFEEE R A D I K A 4 0 1 2 0 0 0 0 0 1 2 1 0 1 0 1 0 0 1 1 0 0 15 0 1609.8352 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;U3KQ64;M0R2K9 B2R8G6 179 193 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8;Peptidyl-prolyl cis-trans isomerase yes no 2 0.00022235 67.385 2 0.77789 0.79333 NaN 1 Median 0.77789 0.79333 NaN 1 0 Median NaN NaN NaN 0 0 Median 17443000 12002000 5441000 17443000 12002000 5441000 0 0 0 197 232 201 460;461 697;698 698 2 ADGELNVDSLITR ______________________________ ______________________________ M A D T R L 1 1 1 2 0 0 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 13 0 1401.71 V9HW04;P62140;C9J9S3;C9JP48 V9HW04 2 14 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 2 0.0010164 61.213 2 1.0518 1.0561 0.89402 2 Median 1.0518 1.0561 0.89402 2 0 Median NaN NaN NaN 0 0 Median 18329000 8989900 9339200 18329000 8989900 9339200 0 0 0 198 1633 202 462;463 699;700;701 700 3 ADGTSLDFSTYR SRTPSSCSSSLDSIKADGTSLDFSTYRSSQ SIKADGTSLDFSTYRSSQMESQFLRDTICE K A D Y R S 1 1 0 2 0 0 0 1 0 0 1 0 0 1 0 2 2 0 1 0 0 0 12 0 1331.5994 Q8NG31;H0YCZ2;H0YEY7 Q8NG31 1856 1867 CASC5 Protein CASC5 yes no 2 0.0029944 57.174 1 1.2785 1.1259 NaN 1 Median NaN NaN NaN 0 0 Median 1.2785 1.1259 NaN 1 0 Median 1875900 671960 1204000 0 0 0 1875900 671960 1204000 199 1928 203 464 702 702 1 ADGYVLEGK KLLACIASRPGQCGRADGYVLEGKELEFYL PGQCGRADGYVLEGKELEFYLRKIKARKGK R A D G K E 1 0 0 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 1 1 0 0 9 0 950.47091 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 185 193 RPS8 40S ribosomal protein S8 yes no 2 0.00064829 96.311 2 2 0.82669 0.85042 6.4363 4 Median 0.74515 0.88359 2.4292 2 0 Median 0.92777 0.80287 5.1562 2 0 Median 2079800000 1163200000 916640000 1771900000 1001700000 770260000 307910000 161530000 146380000 200 1635 204 465;466;467;468 703;704;705;706;707;708;709;710;711;712;713;714;715;716;717;718;719;720 705 18 ADHQPLTEASYVNLPTIALCNTDSPLR AAFREPRLLVVTDPRADHQPLTEASYVNLP NLPTIALCNTDSPLRYVDIAIPCNNKGAHS R A D L R Y 3 1 2 2 1 1 1 0 1 1 4 0 0 0 3 2 3 0 1 1 0 0 27 0 2995.4709 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5 C9J9K3 129 155 RPSA;LOC388524 40S ribosomal protein SA yes no 3 5.9836E-20 86.131 2 2 1.4364 1.4294 19.675 4 Median 1.4785 1.6946 1.9462 2 0 Median 1.3931 1.2065 1.8543 2 0 Median 441630000 175850000 265780000 340770000 134890000 205870000 100870000 40958000 59907000 201 119 205 469;470;471;472 721;722;723;724;725;726;727;728;729;730;731 726 11 ADIDLTK IKGVGRRYAHVVLRKADIDLTKRAGELTED YAHVVLRKADIDLTKRAGELTEDEVERVIT K A D T K R 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 7 0 774.41233 P62269 P62269 48 54 RPS18 40S ribosomal protein S18 yes yes 2 0.029647 69.998 1 1.1668 1.3041 NaN 1 Median 1.1668 1.3041 NaN 1 0 Median NaN NaN NaN 0 0 Median 99226000 49001000 50225000 99226000 49001000 50225000 0 0 0 202 1639 206 473 732 732 1 ADILEDK KKLKEVFSMAGVVVRADILEDKDGKSRGIG SMAGVVVRADILEDKDGKSRGIGTVTFEQS R A D D K D 1 0 0 2 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 802.40725 M0QZM1;P52272;A0A087X0X3;Q59ES8;Q7KYM9;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7 P52272 233 239 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M no no 2 0.031506 67.032 1 1.3595 1.534 NaN 1 Median 1.3595 1.534 NaN 1 0 Median NaN NaN NaN 0 0 Median 133860000 59664000 74197000 133860000 59664000 74197000 0 0 0 203 1599;1354 207 474 733 733 1 ADLEMQIESLK INGLRRVLDELTLARADLEMQIESLKEELA TLARADLEMQIESLKEELAYLKKNHEEEMN R A D L K E 1 0 0 1 0 1 2 0 0 1 2 1 1 0 0 1 0 0 0 0 0 0 11 0 1275.6381 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2 CON__P02533 233 243 KRT14 Keratin, type I cytoskeletal 14 yes no 2 0.00044195 83.438 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53179000 53179000 0 48566000 48566000 0 4612700 4612700 0 + 204 1150 208 475;476;477 734;735;736;737 734 855 4 ADLEMQIESLTEELAYLK INGLRRVLDELTLTKADLEMQIESLTEELA EMQIESLTEELAYLKKNHEEEMKDLRNVST K A D L K K 2 0 0 1 0 1 4 0 0 1 4 1 1 0 0 1 1 0 1 0 0 0 18 0 2095.0395 CON__P13645;P13645 CON__P13645 267 284 KRT10 Keratin, type I cytoskeletal 10 yes no 2 6.1786E-10 88.282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71496000 71496000 0 0 0 0 71496000 71496000 0 + 205 1161 209 478 738 738 873 1 ADLESLLQTPGGK RKKLNHLLKALETSKADLESLLQTPGGKPR SKADLESLLQTPGGKPRGFSEAAAPRAFGL K A D G K P 1 0 0 1 0 1 1 2 0 0 3 1 0 0 1 1 1 0 0 0 0 0 13 0 1327.6983 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 797 809 NCAPG2 Condensin-2 complex subunit G2 yes no 2 1.2701E-18 139.64 2 0.96559 1.0805 6.8093 2 Median 0.96559 1.0805 6.8093 2 0 Median NaN NaN NaN 0 0 Median 160180000 73696000 86480000 160180000 73696000 86480000 0 0 0 206 1887 210 479;480 739;740;741;742 742 4 ADLESLLQTPGGKPR RKKLNHLLKALETSKADLESLLQTPGGKPR ADLESLLQTPGGKPRGFSEAAAPRAFGLHC K A D P R G 1 1 0 1 0 1 1 2 0 0 3 1 0 0 2 1 1 0 0 0 0 0 15 1 1580.8522 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 797 811 NCAPG2 Condensin-2 complex subunit G2 yes no 2;3 0.0023428 45.864 2 1 0.91863 1.0692 37.014 3 Median 0.80919 0.93919 18.332 2 0 Median 2.0811 1.7122 NaN 1 0 Median 68984000 29616000 39368000 63863000 27636000 36227000 5121500 1979800 3141600 207 1887 211 481;482;483 743;744;745 743 3 ADLFPILMR FSISEDNAVVKTAHRADLFPILMRILYGRM VKTAHRADLFPILMRILYGRMKNKTGSKTQ R A D M R I 1 1 0 1 0 0 0 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 9 0 1074.5896 O75691 O75691 1006 1014 UTP20 Small subunit processome component 20 homolog yes yes 2 0.050456 46.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 208 1412 212 484 746 746 1 ADLHGAIISVTK ______________________________ LLKADLHGAIISVTKSKCPSYVGITGILLQ K A D T K S 2 0 0 1 0 0 0 1 1 2 1 1 0 0 0 1 1 0 0 1 0 0 12 0 1223.6874 A0A0A0MQS4;A8MYC1;K7ERD7;O95707 A0A0A0MQS4 9 20 POP4 Ribonuclease P protein subunit p29 yes no 2 0.0011794 71.03 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3989700 0 3989700 3989700 0 3989700 0 0 0 209 462 213 485;486 747;748 747 2 ADLINNLGTIAK ERTLTLVDTGIGMTKADLINNLGTIAKSGT MTKADLINNLGTIAKSGTKAFMEALQAGAD K A D A K S 2 0 2 1 0 0 0 1 0 2 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1241.698 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;O14942;Q58FF8;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q14568;B4DTA5;Q86SX1 B4DMA2 96 107 HSP90AB1;HSP90AB2P;EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 no no 2 2.5406E-05 100.88 2 2 2.4932 3.0117 45.156 4 Linear 2.4147 2.8497 2.1626 2 0 Median 1.5424 1.3041 1.2087 2 0 Median 1064900000 325500000 739380000 944520000 277760000 666750000 120360000 47733000 72623000 210 379;1348;1800 214 487;488;489;490 749;750;751;752;753;754;755 749 7 ADLIPYQDSPEGPDHSSASSGVPNPPK INVKRPVERRFPIYKADLIPYQDSPEGPDH PDHSSASSGVPNPPKARTYTETVNHHYLLF K A D P K A 2 0 1 3 0 1 1 2 1 1 1 1 0 0 6 5 0 0 1 1 0 0 27 0 2761.2831 Q8WUA4;Q53SY8;H0Y4Q6;H7C318 Q8WUA4 757 783 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 0.00026061 32.72 2 1 0.66845 0.71616 35.158 3 Median 0.63664 0.67168 9.0681 2 0 Median 1.5413 1.2223 NaN 1 0 Median 42621000 24620000 18001000 38215000 22451000 15764000 4406600 2169200 2237400 211 1938 215 491;492;493 756;757;758;759 757 4 ADLLLSTQPGREEGSPLELER LQASDLPASASLPAKADLLLSTQPGREEGS TQPGREEGSPLELERLKLEPHEGLLLRFPY K A D E R L 1 2 0 1 0 1 4 2 0 0 5 0 0 0 2 2 1 0 0 0 0 0 21 1 2309.1863 B4E2Z3;F5GZS6;J3KPF3;P08195;F5GZI0 B4E2Z3 474 494 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 0.015781 28.813 1 1 1.2667 1.2037 2.171 2 Median 1.1697 1.2223 NaN 1 0 Median 1.3718 1.1853 NaN 1 0 Median 18585000 7342600 11243000 13490000 5169600 8320400 5095100 2172900 2922200 212 1072 216 494;495 760;761 760 1 ADLLQREEEEEEEEDQEGDR TPPEGLRLKPPAGWKADLLQREEEEEEEED REEEEEEEEDQEGDRETTIRGKATPAEEEK K A D D R E 1 2 0 3 0 2 9 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 20 1 2447.0208 Q15269;A0A0B4J2E5 Q15269 234 253 PWP2 Periodic tryptophan protein 2 homolog yes no 3 1.0555E-06 67.928 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4103000 4103000 0 4103000 4103000 0 0 0 0 213 1756 217 496 762;763 762 2 ADLLQREEEEEEEEDQEGDRETTIR TPPEGLRLKPPAGWKADLLQREEEEEEEED EEEEDQEGDRETTIRGKATPAEEEKTGKVK K A D I R G 1 3 0 3 0 2 10 1 0 1 2 0 0 0 0 0 2 0 0 0 0 0 25 2 3047.3439 Q15269;A0A0B4J2E5 Q15269 234 258 PWP2 Periodic tryptophan protein 2 homolog yes no 4 2.9378E-16 93.633 2 2 0.98172 1.0599 17.368 4 Median 0.88662 0.93336 3.598 2 0 Median 1.0584 1.2438 8.2292 2 0 Median 210850000 102500000 108350000 126030000 65025000 61005000 84820000 37471000 47349000 214 1756 218 497;498;499;500 764;765;766;767;768;769 766 6 ADLPEGVAVSGPSPAEFCR HYMDGQTPCLFVSSKADLPEGVAVSGPSPA EGVAVSGPSPAEFCRKHRLPAPVPFSCAGP K A D C R K 3 1 0 1 1 0 2 2 0 0 1 0 0 1 3 2 0 0 0 2 0 0 19 0 1957.9204 Q8IXI1;H3BU27 Q8IXI1 526 544 RHOT2 Mitochondrial Rho GTPase 2 yes no 2 0.0012418 52.265 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11483000 11483000 0 11483000 11483000 0 0 0 0 215 1893 219 501;502;503 770;771;772 771 3 ADLTALFLPR SGKVKRDAEKKDQMKADLTALFLPRQPPMS KDQMKADLTALFLPRQPPMSLAEAEQLMEE K A D P R Q 2 1 0 1 0 0 0 0 0 0 3 0 0 1 1 0 1 0 0 0 0 0 10 0 1115.6339 B4DIX0;Q13045;Q59H95 B4DIX0 844 853 FLII Protein flightless-1 homolog yes no 2 1.0498E-06 111.95 2 2.2526 2.265 11.889 2 Median 2.2526 2.265 11.889 2 0 Median NaN NaN NaN 0 0 Median 15396000 5304800 10091000 15396000 5304800 10091000 0 0 0 216 984 220 504;505 773;774;775;776 774 4 ADMVIEAVFEDLSLK FSNLTGQLDYQGFEKADMVIEAVFEDLSLK ADMVIEAVFEDLSLKHRVLKEVEAVIPDHC K A D L K H 2 0 0 2 0 0 2 0 0 1 2 1 1 1 0 1 0 0 0 2 0 0 15 0 1678.8488 E9KL44;P40939;B4DRH6;B4DDZ5 E9KL44 441 455 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 2.5653E-05 85.288 2 1.3979 1.413 10.057 2 Median 1.3979 1.413 10.057 2 0 Median NaN NaN NaN 0 0 Median 20627000 8053500 12573000 20627000 8053500 12573000 0 0 0 217 1228 221 506;507 777;778;779 778 940 3 ADPAFGLESSGIAGTTSDEPERIEESGNDEAR AHVRKVEEAAKVTGKADPAFGLESSGIAGT DEPERIEESGNDEARVEGQATDEKKEPKEP K A D A R V 4 2 1 3 0 0 6 4 0 2 1 0 0 1 2 4 2 0 0 0 0 0 32 1 3306.476 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 764 795 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 3 7.3621E-44 115.18 1 0.68569 0.77625 NaN 1 Median 0.68569 0.77625 NaN 1 0 Median NaN NaN NaN 0 0 Median 31162000 17572000 13591000 31162000 17572000 13591000 0 0 0 218 321 222 508 780;781;782;783;784 784 5 ADPDGPEAQAEACSGER ______________________________ PDGPEAQAEACSGERTYQELLVNQNPIAQP K A D E R T 4 1 0 2 1 1 3 2 0 0 0 0 0 0 2 1 0 0 0 0 0 0 17 0 1758.7115 Q9NX24;D6RC52;D6RCB9;J3QSY4 Q9NX24 6 22 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 2 8.5294E-59 188.25 2 2 0.74969 0.70564 15.772 4 Median 0.72466 0.81199 10.27 2 0 Median 0.77346 0.63423 5.5042 2 0 Median 152280000 81737000 70542000 124450000 67049000 57403000 27828000 14688000 13140000 219 2077 223 509;510;511;512 785;786;787;788;789;790;791;792 786 8 ADPSQFELLK KEIAITHHVKEGHEKADPSQFELLKVLGQG EGHEKADPSQFELLKVLGQGSFGKVFLVKK K A D L K V 1 0 0 1 0 1 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 10 0 1146.5921 B4DKZ2;B4DG22;B7ZB17;P51812;B1AXG1;B1AXG2;F2Z2J1;Q15349;D6RA62;D6RE03 B4DKZ2 34 43 RPS6KA3;RPS6KA2 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-2 yes no 2 0.0032994 65.156 1 1.3527 1.3901 NaN 1 Median 1.3527 1.3901 NaN 1 0 Median NaN NaN NaN 0 0 Median 10680000 4054800 6625000 10680000 4054800 6625000 0 0 0 220 971 224 513 793 793 1 ADQDRLDLEER ATLAQELEKFNRDQKADQDRLDLEERKKVE RDQKADQDRLDLEERKKVETEAKIKQKLRE K A D E R K 1 2 0 3 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 1 1358.6426 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709;Q68EN4 Q14683 402 412 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.046051 31.526 1 0.50499 0.57273 NaN 1 Median 0.50499 0.57273 NaN 1 0 Median NaN NaN NaN 0 0 Median 33433000 20658000 12774000 33433000 20658000 12774000 0 0 0 221 1739 225 514 794 794 0 ADQLTEEQIAEFK ______________________________ ______________________________ M A D F K E 2 0 0 1 0 2 3 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 13 0 1520.7359 Q9BRL5;P0DP25;P0DP24;P0DP23;B4DJ51;B2RDW0;H0Y7A7;F8WBR5;M0QZ52;G3V479 Q9BRL5 2 14 CALM3;CALM2;CALM1 yes no 2 0.0054806 50.354 1 1.111 1.0975 NaN 1 Median 1.111 1.0975 NaN 1 0 Median NaN NaN NaN 0 0 Median 9356300 5454200 3902100 9356300 5454200 3902100 0 0 0 222 890 226 515 795 795 1 ADRDESSPYAAMLAAQDVAQR GKETICRVTGGMKVKADRDESSPYAAMLAA SPYAAMLAAQDVAQRCKELGITALHIKLRA K A D Q R C 6 2 0 3 0 2 1 0 0 0 1 0 1 0 1 2 0 0 1 1 0 0 21 1 2264.0492 P62263;H0YB22;E5RH77 P62263 64 84 RPS14 40S ribosomal protein S14 yes no 3 9.5313E-12 94.234 6 6 1.1754 1.0517 40.794 10 Median 1.2245 1.3765 6.9065 4 0 Median 0.70729 0.64251 30.054 6 0 Median 1063400000 515900000 547470000 784430000 365750000 418680000 278940000 150150000 128790000 223 1638 227;228 516;517;518;519;520;521;522;523;524;525;526;527 796;797;798;799;800;801;802;803;804;805;806;807;808;809;810;811;812;813;814;815;816;817;818 802 1418 23 ADSLEVQQMK QLCIGNHDLFMRRRKADSLEVQQMKAQARE MRRRKADSLEVQQMKAQAREEKARKQMERQ K A D M K A 1 0 0 1 0 2 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 10 0 1147.5543 A0A024R1D9;A0A024R1I0;A0A024R1F6;A0A024R1J9;A0A024R1J8;B7Z4B6;P35240 A0A024R1D9 230 239 NF2 Merlin yes no 2 0.0055913 51.854 2 0.729 0.72828 13.218 2 Median 0.729 0.72828 13.218 2 0 Median NaN NaN NaN 0 0 Median 49857000 26829000 23027000 49857000 26829000 23027000 0 0 0 224 76 229 528;529 819;820 819 46 2 ADSLLAVVK LDLASESTAHAQSSKADSLLAVVKREPAEQ HAQSSKADSLLAVVKREPAEQPGDGERTDC K A D V K R 2 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 9 0 914.54368 Q14151;A0PJ47 Q14151 285 293 SAFB2 Scaffold attachment factor B2 no no 2 0.0013285 86.833 1 1.3617 1.3866 NaN 1 Median 1.3617 1.3866 NaN 1 0 Median NaN NaN NaN 0 0 Median 16966000 8207100 8759200 16966000 8207100 8759200 0 0 0 225 1727 230 530 821 821 1 ADSNNLFNTGSSGPGK LGSVQSTATQSNVEKADSNNLFNTGSSGPG DSNNLFNTGSSGPGKFYSPLPNDQLLKTLT K A D G K F 1 0 3 1 0 0 0 3 0 0 1 1 0 1 1 3 1 0 0 0 0 0 16 0 1564.7118 Q9UIF8;Q8NC87 Q9UIF8 1523 1538 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B yes no 2 0.011689 62.088 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10479000 10479000 0 10479000 10479000 0 0 0 0 226 2102 231 531;532 822;823;824;825 824 4 ADTCSFVR VRDGPNKGKSFYVCRADTCSFVRATDIPVS KSFYVCRADTCSFVRATDIPVSHCLLHEDF R A D V R A 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 8 0 954.42292 A0A024R0F1;Q9UNY4 A0A024R0F1 34 41 TTF2 Transcription termination factor 2 yes no 2 0.0032369 100.39 4 2 1.4482 1.2462 1.9624 2 Median NaN NaN NaN 0 0 Median 1.4482 1.2462 1.9624 2 0 Median 24364000 19416000 4948600 16385000 16385000 0 7979900 3031400 4948600 227 44 232 533;534;535;536;537;538 826;827;828;829;830;831 826 6 ADTEEEFLAFR TPTSSKPQPKRSLRKADTEEEFLAFRKQTP SLRKADTEEEFLAFRKQTPSAGKAMHTPKP K A D F R K 2 1 0 1 0 0 3 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 11 0 1326.6092 P46013 P46013 1762 1772 MKI67 Antigen KI-67 yes yes 2 2.2392E-31 185.81 2 2 2.3452 2.3442 18.518 4 Median 1.7117 2.0051 1.154 2 0 Median 3.1835 2.7607 2.1815 2 0 Median 786690000 271310000 515380000 651480000 239570000 411910000 135210000 31736000 103470000 228 1569 233 539;540;541;542 832;833;834;835;836;837;838;839 838 8 ADTEEEFLAFRK TPTSSKPQPKRSLRKADTEEEFLAFRKQTP LRKADTEEEFLAFRKQTPSAGKAMHTPKPA K A D R K Q 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 12 1 1454.7042 P46013 P46013 1762 1773 MKI67 Antigen KI-67 yes yes 2;3 5.7469E-05 93.096 3 3.8964 3.3044 2.7452 2 Median NaN NaN NaN 0 0 Median 3.8964 3.3044 2.7452 2 0 Median 28735000 4149600 24586000 0 0 0 28735000 4149600 24586000 229 1569 234 543;544;545 840;841;842 841 3 ADTGLDDDIENEADISMYGK EHSLQVSPSLEKGAKADTGLDDDIENEADI DDDIENEADISMYGKEELLQVVEAMKTLLL K A D G K E 2 0 1 5 0 0 2 2 0 2 1 1 1 0 0 1 1 0 1 0 0 0 20 0 2170.9212 O95235 O95235 541 560 KIF20A Kinesin-like protein KIF20A yes yes 2 5.6426E-68 176.4 3 1 0.87235 0.93951 21.996 3 Median 0.7873 0.82052 19.152 2 0 Median 1.3969 1.1078 NaN 1 0 Median 66337000 32974000 33363000 61729000 31042000 30687000 4607800 1932300 2675500 230 1421 235;236 546;547;548;549 843;844;845;846;847;848;849 847 1111 7 ADTLDPALLRPGR FDQNVNVKVIMATNRADTLDPALLRPGRLD NRADTLDPALLRPGRLDRKIEFPLPDRRQK R A D G R L 2 2 0 2 0 0 0 1 0 0 3 0 0 0 2 0 1 0 0 0 0 0 13 1 1393.7678 A8K2M0;P43686 A8K2M0 314 326 PSMC4 26S protease regulatory subunit 6B yes no 3 0.031454 25.322 1 0.89144 0.90908 NaN 1 Median 0.89144 0.90908 NaN 1 0 Median NaN NaN NaN 0 0 Median 11510000 5316900 6193200 11510000 5316900 6193200 0 0 0 231 710 237 550 850 850 1 ADTLTDEINFLR DVDAAYMNKVELQAKADTLTDEINFLRALY QAKADTLTDEINFLRALYDAELSQMQTHIS K A D L R A 1 1 1 2 0 0 1 0 0 1 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1406.7042 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DWU6;CON__P04259 B2R853 288 299 KRT6C;KRT6A Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 8.9078E-21 142.43 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 198400000 198400000 0 158040000 158040000 0 40364000 40364000 0 + 232 859;1154 238 551;552;553 851;852;853 853 3 ADTQTYQPYNK DFIDDLADLSCLVYRADTQTYQPYNKDWIK LVYRADTQTYQPYNKDWIKEKIYVLLRRQA R A D N K D 1 0 1 1 0 2 0 0 0 0 0 1 0 0 1 0 2 0 2 0 0 0 11 0 1327.6044 A0A024R6D4;P84090 A0A024R6D4 74 84 ERH Enhancer of rudimentary homolog yes no 2 1.7208E-132 276.03 2 2 0.75998 0.73752 41.326 4 Median 0.91544 1.0443 0.29637 2 0 Median 0.63672 0.5108 3.0575 2 0 Median 339770000 176180000 163590000 313760000 160250000 153510000 26014000 15937000 10077000 233 201 239 554;555;556;557 854;855;856;857;858;859;860 857 7 ADTTSTVTPVPGQEK CGEESSKAKEVTIAKADTTSTVTPVPGQEK ADTTSTVTPVPGQEKGSALEGRADTTTGSA K A D E K G 1 0 0 1 0 1 1 1 0 0 0 1 0 0 2 1 4 0 0 2 0 0 15 0 1529.7573 A0A1B0GV09;Q9H9B1;A0A0C4DGF8;A0A1B0GU48 A0A1B0GV09 614 628 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 0.00080537 83.455 2 1.0204 1.0375 NaN 1 Median 1.0204 1.0375 NaN 1 0 Median NaN NaN NaN 0 0 Median 29839000 20250000 9589100 29839000 20250000 9589100 0 0 0 234 631 240 558;559 861;862 861 2 ADTTTGSAAGPPLSEDDK TPVPGQEKGSALEGRADTTTGSAAGPPLSE TTGSAAGPPLSEDDKLQGAASHVPEGFDPT R A D D K L 3 0 0 3 0 0 1 2 0 0 1 1 0 0 2 2 3 0 0 0 0 0 18 0 1731.7799 A0A1B0GV09;Q9H9B1;A0A0C4DGF8;A0A1B0GU48 A0A1B0GV09 636 653 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 1.0457E-05 79.639 2 2 0.92781 0.94856 12.579 3 Median 0.84969 0.86955 12.3 2 0 Median 1.2775 1.0178 NaN 1 0 Median 35095000 18837000 16258000 30692000 15969000 14722000 4403500 2867800 1535700 235 631 241 560;561;562;563 863;864;865;866;867;868;869;870 865 8 ADTTTPTTIDPIHEPPSLPPEPK ATPQPVKTKKGVKRKADTTTPTTIDPIHEP IDPIHEPPSLPPEPKTTKLGQRRESSRPVK K A D P K T 1 0 0 2 0 0 2 0 1 2 1 1 0 0 7 1 5 0 0 0 0 0 23 0 2453.2326 O60885;A0A024R7H8;Q6PIS5;Q6NXE4;Q05BM2;Q5BJ26;M0QZD9 O60885 292 314 BRD4 Bromodomain-containing protein 4 yes no 3 0.0057271 33.665 2 0.66087 0.68279 7.2636 2 Median 0.66087 0.68279 7.2636 2 0 Median NaN NaN NaN 0 0 Median 22228000 10620000 11608000 22228000 10620000 11608000 0 0 0 236 1399 242 564;565 871;872 872 1 ADTTTPTTSAITASR PPTPPVVKKKGVKRKADTTTPTTSAITASR ADTTTPTTSAITASRSESPPPLSDPKQAKV K A D S R S 3 1 0 1 0 0 0 0 0 1 0 0 0 0 1 2 6 0 0 0 0 0 15 0 1492.7369 A0A024R8H6;Q15059;A0A140F1N4 A0A024R8H6 246 260 BRD3 Bromodomain-containing protein 3 yes no 2 0.00097261 49.081 2 0.47905 0.4896 7.8211 2 Median 0.47905 0.4896 7.8211 2 0 Median NaN NaN NaN 0 0 Median 23179000 14475000 8703700 23179000 14475000 8703700 0 0 0 237 249 243 566;567 873;874;875 875 3 ADVDVQPYAFTTK YPNVGKSSFINKVTRADVDVQPYAFTTKSL TRADVDVQPYAFTTKSLFVGHMDYKYLRWQ R A D T K S 2 0 0 2 0 1 0 0 0 0 0 1 0 1 1 0 2 0 1 2 0 0 13 0 1453.7089 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 189 201 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 1.2065E-23 156.51 2 2 1.358 1.3591 1.9013 4 Median 1.1825 1.3824 0.33959 2 0 Median 1.5607 1.3379 0.15198 2 0 Median 775580000 339970000 435610000 585760000 270810000 314960000 189810000 69160000 120650000 238 1183 244 568;569;570;571 876;877;878;879;880;881;882;883 879 8 ADVEEEFLAFR TPTNTKQRPKRSLKKADVEEEFLAFRKLTP SLKKADVEEEFLAFRKLTPSAGKAMHTPKA K A D F R K 2 1 0 1 0 0 3 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 11 0 1324.6299 P46013 P46013 1884 1894 MKI67 Antigen KI-67 yes yes 2 8.5874E-11 136.63 2 2 2.3797 2.2863 18.087 4 Median 1.7395 1.9781 0.7028 2 0 Median 3.2375 2.6996 3.726 2 0 Median 185340000 60313000 125020000 149820000 52506000 97318000 35514000 7807600 27707000 239 1569 245 572;573;574;575 884;885;886;887;888;889;890;891 886 8 ADVEEEFLAFRK TPTNTKQRPKRSLKKADVEEEFLAFRKLTP LKKADVEEEFLAFRKLTPSAGKAMHTPKAA K A D R K L 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 12 1 1452.7249 P46013 P46013 1884 1895 MKI67 Antigen KI-67 yes yes 2 0.036355 38.478 1 3.3589 3.0358 NaN 1 Median NaN NaN NaN 0 0 Median 3.3589 3.0358 NaN 1 0 Median 1880200 458170 1422100 0 0 0 1880200 458170 1422100 240 1569 246 576 892 892 1 ADVEEEFLALR TPTSTKQWPKRSLRKADVEEEFLALRKLTP SLRKADVEEEFLALRKLTPSAGKAMLTPKP K A D L R K 2 1 0 1 0 0 3 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1290.6456 P46013 P46013 1154 1164 MKI67 Antigen KI-67 yes no 2 5.8184E-23 168.83 2 2 2.3495 2.3892 18.973 4 Median 1.715 2.0205 5.8765 2 0 Median 3.2056 2.7853 3.8664 2 0 Median 1379200000 484500000 894680000 1155300000 428060000 727220000 223900000 56440000 167460000 241 1569 247 577;578;579;580 893;894;895;896;897;898;899;900;901 894 9 ADVEEEFLALRK TPTSTKQWPKRSLRKADVEEEFLALRKLTP LRKADVEEEFLALRKLTPSAGKAMLTPKPA K A D R K L 2 1 0 1 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1418.7405 P46013 P46013 1154 1165 MKI67 Antigen KI-67 yes no 2;3 1.7645E-12 130.98 4 2 1.8856 2.254 19.792 6 Median 1.8522 2.2128 2.7374 4 0 Median 3.7286 3.237 4.2359 2 0 Median 680660000 224510000 456140000 589280000 205820000 383460000 91383000 18693000 72690000 242 1569 248 581;582;583;584;585;586 902;903;904;905;906;907;908;909;910;911 910 10 ADVEEESLALR TPTIFKPQSKRSLRKADVEEESLALRKRTP SLRKADVEEESLALRKRTPSVGKAMDTPKP K A D L R K 2 1 0 1 0 0 3 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1230.6092 P46013 P46013 2246 2256 MKI67 Antigen KI-67 yes yes 2 1.5223E-12 143.89 2 2 2.1417 2.1596 19.515 4 Median 1.6017 1.8689 0.89867 2 0 Median 3.0282 2.6021 6.8072 2 0 Median 569250000 209410000 359840000 512290000 195190000 317110000 56958000 14227000 42731000 243 1569 249 587;588;589;590 912;913;914;915;916;917;918 913 7 ADVEEESLALRK TPTIFKPQSKRSLRKADVEEESLALRKRTP LRKADVEEESLALRKRTPSVGKAMDTPKPA K A D R K R 2 1 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 12 1 1358.7042 P46013 P46013 2246 2257 MKI67 Antigen KI-67 yes yes 2;3 5.1466E-18 147.3 5 4 2.0119 2.4198 23.615 9 Median 1.6641 1.9716 15.263 5 0 Median 3.5049 3.0278 4.4844 4 0 Median 984910000 322810000 662100000 821490000 286890000 534600000 163420000 35917000 127500000 244 1569 250 591;592;593;594;595;596;597;598;599 919;920;921;922;923;924;925;926;927;928;929;930;931;932;933 924 14 ADVEGELLACR TPTSTKQRPKRSIRKADVEGELLACRNLMP SIRKADVEGELLACRNLMPSAGKAMHTPKP K A D C R N 2 1 0 1 1 0 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1231.5867 P46013 P46013 1276 1286 MKI67 Antigen KI-67 yes yes 2 3.8072E-05 99.815 2 2 2.472 2.4168 27.466 4 Median 1.6684 1.8823 5.5065 2 0 Median 3.4848 3.0185 1.6049 2 0 Median 247670000 77663000 170010000 157280000 58510000 98769000 90394000 19153000 71241000 245 1569 251 600;601;602;603 934;935;936;937;938;939 934 6 ADVIQATGDAICIFR GVDPVEAFAQNVLSKADVIQATGDAICIFR ADVIQATGDAICIFRELQCLTPRGRYDIRI K A D F R E 3 1 0 2 1 1 0 1 0 3 0 0 0 1 0 0 1 0 0 1 0 0 15 0 1648.8243 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 189 203 SSRP1 FACT complex subunit SSRP1 yes no 2 4.0834E-23 150.06 2 2 0.80429 0.81031 3.9765 4 Median 0.68295 0.78833 4.1329 2 0 Median 0.95131 0.82593 2.9422 2 0 Median 550600000 307530000 243070000 355100000 211250000 143860000 195500000 96290000 99211000 246 167 252 604;605;606;607 940;941;942;943;944;945;946;947 941 8 ADVLSGENAYMCAK RQAANIVRALELFVKADVLSGENAYMCAKC KADVLSGENAYMCAKCKKKVPASKRFTIHR K A D A K C 3 0 1 1 1 0 1 1 0 0 1 1 1 0 0 1 0 0 1 1 0 0 14 0 1527.6698 A0A024R8V6;Q9P275;A0A075B784;E9PEW0;Q9H9C5;K7EMM6 A0A024R8V6 291 304 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.052649 42.243 1 1.7083 1.6811 NaN 1 Median 1.7083 1.6811 NaN 1 0 Median NaN NaN NaN 0 0 Median 8635800 2781500 5854200 8635800 2781500 5854200 0 0 0 247 260 253 608 948 948 194 0 ADVQAVVSAVTLLR MQCILQGLDVSNMWKADVQAVVSAVTLLRL KADVQAVVSAVTLLRLLLNCPLSGEKASLL K A D L R L 3 1 0 1 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 4 0 0 14 0 1440.83 A8K4P8;Q14146 A8K4P8 1262 1275 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 2 3.5632E-06 97.911 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9020100 0 9020100 9020100 0 9020100 0 0 0 248 738 254 609;610 949;950 949 2 ADVQSIIGLQR VGRMFKQFNKLTEDKADVQSIIGLQRFFET TEDKADVQSIIGLQRFFETRMNEAFGDTKF K A D Q R F 1 1 0 1 0 2 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1198.667 B2R8R5;Q13263;M0R0K9 B2R8R5 780 790 TRIM28 Transcription intermediary factor 1-beta yes no 2 5.9798E-13 147.95 2 2 1.4361 1.1976 32.716 3 Median 1.8113 2.0624 NaN 1 0 Median 1.4247 1.1717 3.0938 2 0 Median 234650000 52631000 182020000 212090000 44082000 168010000 22556000 8548900 14007000 249 862 255 611;612;613;614 951;952;953;954;955;956 952 6 ADYTSHLR QAAAIILNIYCSRSKADYTSHLRSLVSGLI IYCSRSKADYTSHLRSLVSGLIRLFNDSSP K A D L R S 1 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 0 8 0 961.46174 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2184 2191 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.020993 58.119 1 1.3225 1.3727 NaN 1 Median 1.3225 1.3727 NaN 1 0 Median NaN NaN NaN 0 0 Median 10406000 4025800 6379700 10406000 4025800 6379700 0 0 0 250 1205 256 615 957 957 1 AEAAGLIGWLK VSWVLRSVAEHPLSRAEAAGLIGWLKSHIL PLSRAEAAGLIGWLKSHILPHPVVVADLLK R A E L K S 3 0 0 0 0 0 1 2 0 1 2 1 0 0 0 0 0 1 0 0 0 0 11 0 1127.6339 O60287 O60287 2116 2126 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00024958 90.657 1 2 1.3476 1.1361 2.756 3 Plateau 1.1331 1.1372 NaN 1 0 Median 1.371 1.0842 0.055933 2 0 Median 24808000 9784500 15024000 18649000 7354300 11295000 6159200 2430200 3728900 251 1392 257 616;617;618 958;959;960;961;962 958 5 AEAEAQAEELSFPR VGDLAQFMVQNGLSRAEAEAQAEELSFPRS RAEAEAQAEELSFPRSVVEFLQGYIGVPHG R A E P R S 4 1 0 0 0 1 4 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 14 0 1546.7264 A0A024R5C5;P11498;E9PS68 A0A024R5C5 929 942 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 1.1844E-14 134.13 2 1.3665 1.4011 3.6564 2 Median 1.3665 1.4011 3.6564 2 0 Median NaN NaN NaN 0 0 Median 30309000 13223000 17086000 30309000 13223000 17086000 0 0 0 252 176 258 619;620 963;964;965;966;967 965 5 AEAEAWYQTK AEVKAQYEEMAKCSRAEAEAWYQTKFETLQ AKCSRAEAEAWYQTKFETLQAQAGKHGDDL R A E T K F 3 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 10 0 1195.551 CON__P08729;CON__Q9DCV7;CON__Q3KNV1;P08729;CON__Q5XKE5;Q5XKE5 CON__Q3KNV1 277 286 KRT7;KRT79 Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 79 no no 2 6.0122E-65 214.05 2 2 1.0161 0.94726 7.4932 4 Median 0.92382 0.99753 7.5341 2 0 Median 1.1572 0.91197 5.5915 2 0 Median 198630000 100210000 98418000 189510000 95597000 93918000 9111300 4610900 4500400 + 253 1171;1158;1175 259 621;622;623;624 968;969;970;971;972;973;974;975;976 970 9 AEAELLQQQK LKEKMQAVQEATRLKAEAELLQQQKELAQE ATRLKAEAELLQQQKELAQEQARRLQEDKE K A E Q K E 2 0 0 0 0 3 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1156.6088 Q15149 Q15149 2464 2473 PLEC Plectin yes yes 2 0.00023059 78.516 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 254 1754 260 625;626 977;978 978 2 AEAESLYQSK AEVKAQYEDIAQKSKAEAESLYQSKYEELQ AQKSKAEAESLYQSKYEELQITAGRHGDSV K A E S K Y 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 10 0 1124.535 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 367 376 KRT1 Keratin, type II cytoskeletal 1 no no 2 2.0377E-15 131.62 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1574600000 1574600000 0 1282300000 1282300000 0 292260000 292260000 0 + 255 1308;1309 261 627;628;629;630 979;980;981;982;983 981 5 AEAESMYQIK AEVKAQYEDIANRSRAEAESMYQIKYEELQ ANRSRAEAESMYQIKYEELQSLAGKHGDDL R A E I K Y 2 0 0 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 1 0 0 0 10 0 1168.5434 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931;CON__Q9H552 CON__P05787 276 285 KRT8 Keratin, type II cytoskeletal 8 yes no 2 5.93E-10 132.76 3 3 1.5242 1.6494 30.954 6 Median 1.3768 1.607 39.061 3 0 Median 2.3243 1.8438 23.432 3 0 Median 418500000 170890000 247610000 408130000 167300000 240830000 10370000 3593300 6777200 + 256 1156 262;263 631;632;633;634;635;636 984;985;986;987;988;989;990;991 987 862 8 AEAESWYQTK AEVKAQYEEIAQRSRAEAESWYQTKYEELQ AQRSRAEAESWYQTKYEELQVTAGRHGDDL R A E T K Y 2 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 10 0 1211.5459 CON__O95678;O95678;CON__Q8BGZ7;B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4 B2R853 350 359 KRT75;KRT6C;KRT6A Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 1.6267E-39 172.23 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66082000 66082000 0 62889000 62889000 0 3193600 3193600 0 + 257 859;1154;1147;1180 264 637;638;639 992;993;994 993 3 AEAETLPSLSITK IHELFVPENKLDHVRAEAETLPSLSITKLD VRAEAETLPSLSITKLDLQWVQVLSEGWAT R A E T K L 2 0 0 0 0 0 2 0 0 1 2 1 0 0 1 2 2 0 0 0 0 0 13 0 1358.7293 Q5TB52;B4DWB5;O95340 Q5TB52 239 251 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 5.9345E-06 105.2 2 2 4.478 4.9331 57.013 3 Median 4.6102 5.0277 2.6851 2 0 Median 2.3118 1.8739 NaN 1 0 Median 84931000 14932000 69999000 80222000 14206000 66016000 4709600 726240 3983400 258 1044 265 640;641;642;643 995;996;997;998;999;1000;1001 995 7 AEAGAEAEAEEENTNPSSSGSAHSVAK KGEPEAPPASGLASRAEAGAEAEAEEENTN NTNPSSSGSAHSVAKEPAKGAAPNAPRTRK R A E A K E 7 0 2 0 0 0 6 2 1 0 0 1 0 0 1 5 1 0 0 1 0 0 27 0 2629.1376 O43248;J3KMZ0 O43248 193 219 HOXC11 Homeobox protein Hox-C11 yes no 3 3.1406E-107 194.21 2 1 0.63379 0.63863 24.064 3 Median 0.60316 0.59919 9.0166 2 0 Median 1.1369 0.89558 NaN 1 0 Median 61066000 35823000 25242000 50111000 30555000 19556000 10955000 5268700 5686400 259 1383 266 644;645;646 1002;1003;1004;1005;1006;1007;1008 1005 7 AEAGAGSATEFQFR DTYRRSAVPPGADKKAEAGAGSATEFQFRG KAEAGAGSATEFQFRGGFGRGRGQPPQ___ K A E F R G 4 1 0 0 0 1 2 2 0 0 0 0 0 2 0 1 1 0 0 0 0 0 14 0 1440.6634 P46783;Q59GE4;Q9NQ39 P46783 140 153 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2 1.7583E-09 118.9 2 1.0978 1.2826 4.3595 2 Median 1.0978 1.2826 4.3595 2 0 Median NaN NaN NaN 0 0 Median 513520000 241560000 271960000 513520000 241560000 271960000 0 0 0 260 1573 267 647;648 1009;1010;1011;1012;1013;1014 1013 6 AEAGDNLGALVR TVVTGIEMFHKSLERAEAGDNLGALVRGLK LERAEAGDNLGALVRGLKREDLRRGLVMVK R A E V R G 3 1 1 1 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1184.6149 P49411 P49411 316 327 TUFM Elongation factor Tu, mitochondrial yes yes 2 5.1975E-13 134.51 1 1 1.6504 1.6028 35.037 2 Median 1.8359 2.0533 NaN 1 0 Median 1.4837 1.251 NaN 1 0 Median 97694000 36791000 60902000 88011000 32950000 55061000 9682800 3841300 5841600 261 1580 268 649;650 1015;1016;1017;1018 1015 4 AEAGPEGVAPAPEGEK KENGDKSEAQKPSEKAEAGPEGVAPAPEGE EAGPEGVAPAPEGEKKQKPARKRRMVEEIG K A E E K K 4 0 0 0 0 0 4 3 0 0 0 1 0 0 3 0 0 0 0 1 0 0 16 0 1507.7155 B7Z766;A0A087X054;B7Z2N4;B3KXH0;Q9Y4L1;B7Z602 B7Z766 519 534 HYOU1 Hypoxia up-regulated protein 1 yes no 2 2.4872E-06 86.467 3 1.2242 1.2754 NaN 1 Median 1.2242 1.2754 NaN 1 0 Median NaN NaN NaN 0 0 Median 14913000 4589200 10324000 14913000 4589200 10324000 0 0 0 262 443 269 651;652;653 1019;1020;1021;1022 1019 4 AEAGVPAEFSIWTR GGAHKVRAGGPGLERAEAGVPAEFSIWTRE RAEAGVPAEFSIWTREAGAGGLAIAVEGPS R A E T R E 3 1 0 0 0 0 2 1 0 1 0 0 0 1 1 1 1 1 0 1 0 0 14 0 1532.7623 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5C6;Q2VP91 P21333 2251 2264 FLNA;FLJ00119 Filamin-A yes no 2 0.0053616 43.897 1 1 1.5031 1.3831 83.764 2 Median 0.76341 0.76494 NaN 1 0 Median 2.9595 2.5009 NaN 1 0 Median 13999000 5872900 8126400 9143800 4474700 4669100 4855600 1398300 3457300 263 1504 270 654;655 1023;1024;1025 1023 3 AEALEDLVGFK NLPGSKRQPQTPKEKAEALEDLVGFKELFQ PKEKAEALEDLVGFKELFQTPGHTEESMTD K A E F K E 2 0 0 1 0 0 2 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1190.6183 P46013 P46013 2431 2441 MKI67 Antigen KI-67 yes yes 2 0.0001992 92.838 2 2 1.7121 2.0021 20.972 3 Median 1.7067 1.9939 0.57626 2 0 Median 3.3025 2.867 NaN 1 0 Median 761110000 262790000 498320000 627200000 231620000 395580000 133910000 31170000 102740000 264 1569 271 656;657;658;659 1026;1027;1028;1029;1030;1031;1032 1031 7 AEAQGSTTLLVSYR RLPPGSEHCSGIRVKAEAQGSTTLLVSYRH KAEAQGSTTLLVSYRHGHVHLSAKITIAAY K A E Y R H 2 1 0 0 0 1 1 1 0 0 2 0 0 0 0 2 2 0 1 1 0 0 14 0 1494.7678 Q8TEM1 Q8TEM1 612 625 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.043949 41.242 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 265 1937 272 660 1033 1033 1 AEAVVNTVDISER KKRRMLKRLEQTRKKAEAVVNTVDISEREK KKAEAVVNTVDISEREKVAQLRSLYKKAGL K A E E R E 2 1 1 1 0 0 2 0 0 1 0 0 0 0 0 1 1 0 0 3 0 0 13 0 1401.71 Q8IY81;B4DKU3 Q8IY81 764 776 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 1.1168E-15 137.89 2 2 0.97437 0.88489 7.2419 4 Median 0.86188 0.94181 9.6295 2 0 Median 1.0502 0.87314 2.7027 2 0 Median 108700000 56086000 52618000 89844000 46927000 42918000 18859000 9158900 9700000 266 1898 273 661;662;663;664 1034;1035;1036;1037;1038;1039;1040;1041 1037 8 AEDCWELQISPELLAHGR KRKLESLDALEPEEKAEDCWELQISPELLA CWELQISPELLAHGRQKILDLLNEGSARDL K A E G R Q 2 1 0 1 1 1 3 1 1 1 3 0 0 0 1 1 0 1 0 0 0 0 18 0 2123.0106 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 572 589 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 2.4609E-06 79.013 2 1.3336 1.115 1.5984 2 Median NaN NaN NaN 0 0 Median 1.3336 1.115 1.5984 2 0 Median 16572000 8687000 7885000 0 0 0 16572000 8687000 7885000 267 1745 274 665;666 1042;1043;1044;1045 1044 4 AEDELLDLQDK RRLDELEEATKNLQKAEDELLDLQDKVIQA NLQKAEDELLDLQDKVIQAEGSNSSMLAEI K A E D K V 1 0 0 3 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1287.6194 A0A024RAC0;Q86V48;E5RFK8;Q05DE3 A0A024RAC0 40 50 LUZP1 Leucine zipper protein 1 yes no 2 0.034871 48.741 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2986400 0 2986400 0 0 0 2986400 0 2986400 268 300 275 667;668 1046;1047 1047 2 AEDGSVIDYELIDQDAR GDFRKLMVALAKGRRAEDGSVIDYELIDQD DGSVIDYELIDQDARDLYDAGVKRKGTDVP R A E A R D 2 1 0 4 0 1 2 1 0 2 1 0 0 0 0 1 0 0 1 1 0 0 17 0 1907.8749 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YM50;H0YNP5;H0YNA0;H0YN28;H0YL33;B3KRQ1 V9HW65 180 196 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 2 6.5652E-05 81.494 3 1.0391 1.0546 10.768 2 Median 1.0391 1.0546 10.768 2 0 Median NaN NaN NaN 0 0 Median 26041000 11841000 14200000 26041000 11841000 14200000 0 0 0 269 193 276 669;670;671 1048;1049;1050;1051 1048 4 AEDLVPTLVSR AQDNELSNVEFHCGRAEDLVPTLVSRLASQ HCGRAEDLVPTLVSRLASQHLVAILDPPRA R A E S R L 1 1 0 1 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 2 0 0 11 0 1198.6558 F2Z2W7;Q8IZ69;H7C100 F2Z2W7 507 517 TRMT2A tRNA (uracil-5-)-methyltransferase homolog A yes no 2 0.016861 54.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6080300 0 6080300 6080300 0 6080300 0 0 0 270 1254 277 672 1052 1052 1 AEDNADTLALVFEAPNQEK KILKCAGNEDIITLRAEDNADTLALVFEAP ADTLALVFEAPNQEKVSDYEMKLMDLDVEQ R A E E K V 4 0 2 2 0 1 3 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 19 0 2073.9855 Q6FI35;Q6FHF5;P12004 Q6FI35 92 110 PCNA Proliferating cell nuclear antigen yes no 2 1.204E-16 116.06 2 2 0.53279 0.50217 37.43 4 Median 0.62918 0.7013 4.3708 2 0 Median 0.45795 0.36733 1.3539 2 0 Median 152320000 93736000 58581000 113380000 66905000 46480000 38932000 26830000 12101000 271 1473 278 673;674;675;676 1053;1054;1055;1056;1057;1058;1059 1059 7 AEDYEENLQVMR DGEGKVRMIVCVNPKAEDYEENLQVMRFAE NPKAEDYEENLQVMRFAEVTQEVEVARPVD K A E M R F 1 1 1 1 0 1 3 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 12 0 1495.6613 H7BYN4;Q02241 H7BYN4 417 428 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 1.2211E-08 119.68 2 1.3111 1.3454 15.798 2 Median 1.3111 1.3454 15.798 2 0 Median NaN NaN NaN 0 0 Median 35297000 14951000 20346000 35297000 14951000 20346000 0 0 0 272 1312 279 677;678 1060;1061;1062;1063 1061 995 4 AEEAAPAAPPGPK SLHVLSATQAERLARAEEAAPAAPPGPKLW ARAEEAAPAAPPGPKLWYRDFLQLVEPGGG R A E P K L 5 0 0 0 0 0 2 1 0 0 0 1 0 0 4 0 0 0 0 0 0 0 13 0 1204.6088 A0A0C4DGV8;A0A1S5UZH6;Q13214;B4DEK9;Q59FY7;Q6PI51 A0A0C4DGV8 679 691 SEMA3B Semaphorin-3B yes no 2 0.016182 36.585 1 0.98161 0.86376 NaN 1 Median NaN NaN NaN 0 0 Median 0.98161 0.86376 NaN 1 0 Median 1150400 558540 591860 0 0 0 1150400 558540 591860 273 518 280 679 1064 1064 1 AEEDEILNR DGGTVSQEEEDRKPKAEEDEILNRSPRNRK EDRKPKAEEDEILNRSPRNRKPRRE_____ K A E N R S 1 1 1 1 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1087.5146 P27824 P27824 574 582 CANX Calnexin yes yes 2 0.0011452 89.355 1 1 0.91289 0.84532 53.167 2 Median 1.2034 1.2311 NaN 1 0 Median 0.69253 0.58043 NaN 1 0 Median 35753000 16975000 18778000 32591000 15110000 17482000 3161600 1865100 1296500 274 1526 281 680;681 1065;1066 1065 2 AEEDTQFNYHR ELAQEYDKRKKEMVKAEEDTQFNYHRKKNI EMVKAEEDTQFNYHRKKNIAAERKEAKQEK K A E H R K 1 1 1 1 0 1 2 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 11 0 1408.6008 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;Q68EN4;H0Y7K8;Q5H934 Q14683 178 188 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.038216 37.556 1 1.2849 1.1085 NaN 1 Median NaN NaN NaN 0 0 Median 1.2849 1.1085 NaN 1 0 Median 1164800 473870 690960 0 0 0 1164800 473870 690960 275 1739 282 682 1067 1067 1 AEEELGELEAK DTRKSRLELQKDVRKAEEELGELEAKLNEN DVRKAEEELGELEAKLNENLRRNIERINNE K A E A K L 2 0 0 0 0 0 5 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1216.5823 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 685 695 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.00033089 86.898 2 0.87461 0.89415 1.9293 2 Median 0.87461 0.89415 1.9293 2 0 Median NaN NaN NaN 0 0 Median 49712000 27179000 22533000 49712000 27179000 22533000 0 0 0 276 803 283 683;684 1068;1069;1070 1068 3 AEEFVVLSQEPSVTETIAPK FEVYSPMDDAGFPVKAEEFVVLSQEPSVTE VLSQEPSVTETIAPKIARPFIEALKSIEYL K A E P K I 2 0 0 0 0 1 4 0 0 1 1 1 0 1 2 2 2 0 0 3 0 0 20 0 2173.1154 Q96L91 Q96L91 2079 2098 EP400 E1A-binding protein p400 yes yes 2 0.022559 22.991 2 1.7062 1.4059 26.526 2 Median NaN NaN NaN 0 0 Median 1.7062 1.4059 26.526 2 0 Median 7189100 2953600 4235500 0 0 0 7189100 2953600 4235500 277 1977 284 685;686 1071;1072 1071 2 AEEILEK RNEKIAVHCTVRGAKAEEILEKGLKVREYE HCTVRGAKAEEILEKGLKVREYELRKNNFS K A E E K G 1 0 0 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 830.43855 Q08ES8;Q5VVD0;P62913;Q5VVC8;Q5VVC9 Q08ES8 78 84 RPL11 60S ribosomal protein L11 yes no 2 0.022881 91.626 2 1 0.85548 0.96683 6.2371 3 Median 0.80698 0.95286 8.7401 2 0 Median 1.1846 0.96683 NaN 1 0 Median 880710000 459260000 421440000 847760000 443550000 404210000 32946000 15708000 17238000 278 1652 285 687;688;689 1073;1074;1075 1073 3 AEEITIPADVTPEK LSLVGEEFPEEVPPRAEEITIPADVTPEKV RAEEITIPADVTPEKVPTHIVDYSEAEQTD R A E E K V 2 0 0 1 0 0 3 0 0 2 0 1 0 0 2 0 2 0 0 1 0 0 14 0 1511.7719 Q8IXI1;H3BUX4;H3BST5;I3L2C6 Q8IXI1 37 50 RHOT2 Mitochondrial Rho GTPase 2 yes no 2 0.0019366 68.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 279 1893 286 690 1076 1076 1 AEEITIPADVTPER MSLVSEEFPEEVPPRAEEITIPADVTPERV RAEEITIPADVTPERVPTHIVDYSEAEQSD R A E E R V 2 1 0 1 0 0 3 0 0 2 0 0 0 0 2 0 2 0 0 1 0 0 14 0 1539.7781 H7BXZ6;Q8IXI2 H7BXZ6 16 29 RHOT1 Mitochondrial Rho GTPase;Mitochondrial Rho GTPase 1 yes no 2 0.015611 48.284 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4426400 0 4426400 4426400 0 4426400 0 0 0 280 1310 287 691;692 1077;1078;1079 1078 3 AEEIWQQSVIGDYLAR GEREERGKLPESPKRAEEIWQQSVIGDYLA EEIWQQSVIGDYLARFKNDRVKALKAMEMT R A E A R F 2 1 0 1 0 2 2 1 0 2 1 0 0 0 0 1 0 1 1 1 0 0 16 0 1876.9319 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0;E9PLT2 E9PKP7 451 466 UBTF Nucleolar transcription factor 1 yes no 2 1.0883E-10 93.011 2 1 0.60515 0.60504 30.476 3 Median 0.56657 0.56712 9.1524 2 0 Median 1.0836 0.94993 NaN 1 0 Median 38683000 24176000 14506000 35099000 22787000 12311000 3584000 1389000 2195000 281 1244 288 693;694;695 1080;1081;1082 1080 1 AEELGLPILGVLR VSDGAAAILLARRSKAEELGLPILGVLRSY SKAEELGLPILGVLRSYAVVGVPPDIMGIG K A E L R S 1 1 0 0 0 0 2 2 0 1 4 0 0 0 1 0 0 0 0 1 0 0 13 0 1378.8184 H7C131;Q8NCW8;B4DEN6;C9JDE9;A0A024R2M6;P09110 H7C131 183 195 ACAA1 3-ketoacyl-CoA thiolase, peroxisomal yes no 2 0.00032767 64.297 1 1.7328 1.8679 NaN 1 Median 1.7328 1.8679 NaN 1 0 Median NaN NaN NaN 0 0 Median 3002000 1636000 1366000 3002000 1636000 1366000 0 0 0 282 116 289 696 1083;1084 1084 2 AEELGQELK ASENLRQELTSQAERAEELGQELKAWQEKF TSQAERAEELGQELKAWQEKFFQKEQALST R A E L K A 1 0 0 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1015.5186 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1322 1330 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0018366 80.219 1 2 1.6959 1.3591 13.495 3 Median 1.0687 1.168 NaN 1 0 Median 1.7824 1.4414 8.3199 2 0 Median 67460000 30161000 37299000 51138000 24140000 26999000 16322000 6021500 10301000 283 186;1747 290 697;698;699 1085;1086;1087;1088;1089 1086 5 AEELHYPLGER LGLLLLCAAAAGAGKAEELHYPLGERRSDY GAGKAEELHYPLGERRSDYDREALLGVQED K A E E R R 1 1 0 0 0 0 3 1 1 0 2 0 0 0 1 0 0 0 1 0 0 0 11 0 1312.6412 Q14257;H0YL43;A8MXP8 Q14257 25 35 RCN2 Reticulocalbin-2 yes no 2;3 3.0231E-05 117.7 4 1.4692 1.6222 21.4 4 Median 1.4692 1.6222 21.4 4 0 Median NaN NaN NaN 0 0 Median 150820000 63975000 86847000 150820000 63975000 86847000 0 0 0 284 1730 291 700;701;702;703 1090;1091;1092;1093;1094 1094 5 AEEPSDLIGPEAPK SQEEFLENPWKDRTKAEEPSDLIGPEAPKT KAEEPSDLIGPEAPKTLTSQDDKPLNYGHA K A E P K T 2 0 0 1 0 0 3 1 0 1 1 1 0 0 3 1 0 0 0 0 0 0 14 0 1451.7144 Q8N5F7 Q8N5F7 284 297 NKAP NF-kappa-B-activating protein yes yes 2 0.0059854 42.843 1 0.71486 0.58567 NaN 1 Median NaN NaN NaN 0 0 Median 0.71486 0.58567 NaN 1 0 Median 2593000 1563100 1029900 0 0 0 2593000 1563100 1029900 285 1911 292 704 1095 1095 1 AEEVATFFAK VKFYYDGKVMKLSPKAEEVATFFAKMLDHE KLSPKAEEVATFFAKMLDHEYTTKEIFRKN K A E A K M 3 0 0 0 0 0 2 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 10 0 1111.555 P11387;B9EG90 P11387 253 262 TOP1 DNA topoisomerase 1 yes no 2 4.0192E-08 117.81 2 2 1.296 1.3013 1.2614 4 Median 1.0964 1.3014 2.0919 2 0 Median 1.5047 1.3013 0.63043 2 0 Median 1752200000 827860000 924290000 1453500000 710530000 743020000 298600000 117340000 181270000 286 1470 293 705;706;707;708 1096;1097;1098;1099;1100;1101;1102;1103;1104;1105;1106;1107;1108;1109 1099 14 AEEYTEETEEREESTTGFDK SRSSSSSSQSSHSYKAEEYTEETEEREEST EETEEREESTTGFDKSRLGTKDFVGPSERG K A E D K S 1 1 0 1 0 0 8 1 0 0 0 1 0 1 0 1 4 0 1 0 0 0 20 1 2378.9874 Q9Y2W1 Q9Y2W1 792 811 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 8.8284E-18 115.57 2 2 1.4856 1.4458 7.4047 4 Median 1.29 1.5167 8.6322 2 0 Median 1.6694 1.4065 5.7547 2 0 Median 110940000 42344000 68601000 96387000 37274000 59114000 14557000 5070100 9486900 287 2128 294 709;710;711;712 1110;1111;1112;1113;1114;1115;1116;1117;1118 1110 9 AEFAAPSTDAPDK ALVKLGNTTVICGVKAEFAAPSTDAPDKGY VKAEFAAPSTDAPDKGYVVPNVDLPPLCSS K A E D K G 4 0 0 2 0 0 1 0 0 0 0 1 0 1 2 1 1 0 0 0 0 0 13 0 1318.6041 Q96B26 Q96B26 64 76 EXOSC8 Exosome complex component RRP43 yes yes 2 2.3956E-05 98.898 2 1.3696 1.5181 8.5173 2 Median 1.3696 1.5181 8.5173 2 0 Median NaN NaN NaN 0 0 Median 127610000 40741000 86867000 127610000 40741000 86867000 0 0 0 288 1959 295 713;714 1119;1120 1119 2 AEFEDQDDEAR DDLKGEMQKQAQLNRAEFEDQDDEARVQYE QLNRAEFEDQDDEARVQYEGFRPGMYVRIE R A E A R V 2 1 0 3 0 1 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 11 0 1323.5215 Q14692 Q14692 864 874 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 1.7174E-12 143.03 2 1 0.93464 1.0375 2.5528 3 Median 0.92697 1.0207 2.307 2 0 Median 1.2617 1.056 NaN 1 0 Median 132290000 68084000 64209000 107670000 57494000 50171000 24628000 10590000 14038000 289 1742 296 715;716;717 1121;1122;1123;1124;1125;1126 1124 6 AEFGDFDIK MLFSSGTVQLTTTSRAEFGDFDIKTVLQEI LTTTSRAEFGDFDIKTVLQEIKRGKRMKCT R A E I K T 1 0 0 2 0 0 1 1 0 1 0 1 0 2 0 0 0 0 0 0 0 0 9 0 1040.4815 A0A0D9SGE8;Q8IWS0;Q5JRC6;B4E138 A0A0D9SGE8 259 267 PHF6 PHD finger protein 6 yes no 2 0.013598 56.432 2 2 0.86115 0.80284 3.4619 4 Median 0.70631 0.79359 4.1961 2 0 Median 1.0157 0.80979 3.7764 2 0 Median 193200000 113720000 79487000 167060000 100600000 66457000 26144000 13114000 13030000 290 528 297 718;719;720;721 1127;1128;1129;1130;1131;1132;1133;1134 1130 8 AEFVEVTK LKAWSVARLSQKFPKAEFVEVTKLVTDLTK LSQKFPKAEFVEVTKLVTDLTKVHKECCHG K A E T K L 1 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 2 0 0 8 0 921.48075 CON__P02769 CON__P02769 249 256 yes yes 2 0.028086 60.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2164800 2164800 0 0 0 0 2164800 2164800 0 + 291 1153 298 722 1135 1135 1 AEGDSAGTAGTPGGTPAGDK RKLRIYISNTFSPSKAEGDSAGTAGTPGGT AGTAGTPGGTPAGDKVASWELRVEGKLLDD K A E D K V 4 0 0 2 0 0 1 6 0 0 0 1 0 0 2 1 3 0 0 0 0 0 20 0 1715.7598 J3KMX2;B9EGA3;Q92925 J3KMX2 132 151 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 1.0043E-12 103.11 1 0.81211 0.80624 NaN 1 Median 0.81211 0.80624 NaN 1 0 Median NaN NaN NaN 0 0 Median 6088900 3143800 2945100 6088900 3143800 2945100 0 0 0 292 1120 299 723 1136;1137 1136 2 AEGDVAALNR GLQRELDGERERREKAEGDVAALNRRIQLV ERREKAEGDVAALNRRIQLVEEELDRAQER K A E N R R 3 1 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1014.5094 B4DVY2;V9HW56;P67936;B4DTB1 B4DVY2 45 54 HEL-S-108;TPM4 Tropomyosin alpha-4 chain yes no 2 4.8926E-08 116.05 2 2.3954 2.4694 NaN 1 Median 2.3954 2.4694 NaN 1 0 Median NaN NaN NaN 0 0 Median 19856000 6394900 13461000 19856000 6394900 13461000 0 0 0 + 293 1043 300 724;725 1138;1139 1138 2 AEGGGATTSTQVMVIK KLLVKMPFQTSPGGKAEGGGATTSTQVMVI EGGGATTSTQVMVIKRPGRKRKAEADPQAI K A E I K R 2 0 0 0 0 1 1 3 0 1 0 1 1 0 0 1 3 0 0 2 0 0 16 0 1548.7818 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;I6LM39;A0A075BPP5 A0A140VKC4 246 261 MECP2 Methyl-CpG-binding protein 2 yes no 2 8.2832E-05 61.235 1 0.77112 0.78889 NaN 1 Median 0.77112 0.78889 NaN 1 0 Median NaN NaN NaN 0 0 Median 11905000 6572700 5332200 11905000 6572700 5332200 0 0 0 294 623 301 726 1140 1140 480 1 AEGLLQGK VALGQCNELLEANPKAEGLLQGKHSTKGLG LLEANPKAEGLLQGKHSTKGLGKMAPSSAH K A E G K H 1 0 0 0 0 1 1 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 814.45487 G3V167;A8K214;Q9UGN5 G3V167 505 512 PARP2 Poly [ADP-ribose] polymerase 2 yes no 2 0.0093828 77.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 295 706 302 727 1141 1141 1 AEGSEAAELAEIYAK LRRERELTAQIAAGRAEGSEAAELAEIYAK AEGSEAAELAEIYAKLEEIEADKAPARASV R A E A K L 5 0 0 0 0 0 4 1 0 1 1 1 0 0 0 1 0 0 1 0 0 0 15 0 1550.7464 B4DRU9;A0A0S2Z5L1;Q9NUQ8 B4DRU9 239 253 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 1.3007E-16 129.84 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17526000 7371800 10154000 17526000 7371800 10154000 0 0 0 296 583 303 728;729 1142;1143 1143 2 AEGTVFTEEDFQK RKACDRPVAKTKKKKAEGTVFTEEDFQKFQ KKAEGTVFTEEDFQKFQQEYFGS_______ K A E Q K F 1 0 0 1 0 1 3 1 0 0 0 1 0 2 0 0 2 0 0 1 0 0 13 0 1499.678 A0A024R1T1;Q86WX3 A0A024R1T1 116 128 RPS19BP1 Active regulator of SIRT1 yes no 2 4.4899E-05 94.363 3 2 1.2379 1.0982 10.27 4 Median 1.0508 1.1129 17.628 2 0 Median 1.3552 1.0982 1.9775 2 0 Median 88752000 38069000 50682000 70814000 30326000 40488000 17938000 7743400 10194000 297 87 304 730;731;732;733;734 1144;1145;1146;1147;1148;1149 1145 5 AEGTVNEGRPESDAADHTGPK NFVRGLHSEPGLEERAEGTVNEGRPESDAA EGRPESDAADHTGPKFDIDMMVSLLRQENA R A E P K F 3 1 1 2 0 0 3 3 1 0 0 1 0 0 2 1 2 0 0 1 0 0 21 1 2136.9672 Q96EH3 Q96EH3 71 91 MALSU1 Mitochondrial assembly of ribosomal large subunit protein 1 yes yes 3 2.4387E-05 43.534 1 1.0987 1.2061 NaN 1 Median 1.0987 1.2061 NaN 1 0 Median NaN NaN NaN 0 0 Median 5214300 2276700 2937600 5214300 2276700 2937600 0 0 0 298 1962 305 735 1150 1150 1 AEGYAEGDLTLYHR QAKTVTELVTKKKPKAEGYAEGDLTLYHRT KAEGYAEGDLTLYHRTSVTDFLRAANPVDF K A E H R T 2 1 0 1 0 0 2 2 1 0 2 0 0 0 0 0 1 0 2 0 0 0 14 0 1593.7423 Q8IY81;B4DKU3 Q8IY81 238 251 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2;3 9.8173E-10 108.35 4 4 1.2053 1.0137 9.8932 8 Median 0.95992 1.0481 14.427 4 0 Median 1.216 0.99444 2.9592 4 0 Median 212030000 105680000 106350000 146060000 75870000 70187000 65975000 29808000 36167000 299 1898 306 736;737;738;739;740;741;742;743 1151;1152;1153;1154;1155;1156;1157;1158;1159;1160;1161;1162 1157 12 AEHDQLLLNYAK ARERAKLQIELGKCKAEHDQLLLNYAKKES KCKAEHDQLLLNYAKKESDLNGAQIKLREY K A E A K K 2 0 1 1 0 1 1 0 1 0 3 1 0 0 0 0 0 0 1 0 0 0 12 0 1413.7252 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 112 123 LMNB1 Lamin-B1 yes no 3 0.028545 27.33 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7346500 7346500 0 7346500 7346500 0 0 0 0 300 1502 307 744 1163 1163 1 AEHDSILAEK PEYIYTRLEMYNILKAEHDSILAEKAEKDS YNILKAEHDSILAEKAEKDSKPIKVTLPDG K A E E K A 2 0 0 1 0 0 2 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1111.551 Q5M7Z9;B2RDX5;Q53GX7;P26639;D6RBR8;D6RCA5;D6R9F8;D6RDJ6 Q5M7Z9 66 75 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 8.2021E-12 140.83 1 2 1.8402 1.9813 43.869 3 Plateau 1.8402 1.9813 NaN 1 0 Median 1.1084 0.92795 3.6595 2 0 Median 40981000 14647000 26334000 37803000 13201000 24602000 3178700 1446400 1732300 301 892 308 745;746;747 1164;1165;1166;1167 1165 4 AEIIDQDLYER FSGLRDTVTPGELLKAEIIDQDLYERLEHG ELLKAEIIDQDLYERLEHGQATAKDVGSLA K A E E R L 1 1 0 2 0 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1363.662 A0A075B730;A0A087X1U6;P58107 A0A075B730 550 560 EPPK1 Epiplakin no no 2 1.1356E-05 104.22 1 2 2.6399 2.3093 10.384 2 Median NaN NaN NaN 0 0 Median 2.6399 2.3093 10.384 2 0 Median 14291000 1276500 13015000 9707400 0 9707400 4584100 1276500 3307600 302 397;1622 309 748;749;750 1168;1169;1170;1171;1172 1168 5 AEINILLCGDPGTSK GTRKDFSHTGGGKFRAEINILLCGDPGTSK AEINILLCGDPGTSKSQLLQYVYNLVPRGQ R A E S K S 1 0 1 1 1 0 1 2 0 2 2 1 0 0 1 1 1 0 0 0 0 0 15 0 1586.7974 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RG31 B4DLA6 462 476 MCM4 DNA replication licensing factor MCM4 yes no 2 0.012739 48.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3937100 3937100 0 3937100 3937100 0 0 0 0 303 235 310 751 1173 1173 1 AEIPCEDEQEQEHNGPLDNK SFSEQHISQLQESIRAEIPCEDEQEQEHNG EDEQEQEHNGPLDNKGKSTAGNFLVNPLEP R A E N K G 1 0 2 2 1 2 5 1 1 1 1 1 0 0 2 0 0 0 0 0 0 0 20 0 2350.9972 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9;H0Y932 Q96SB4 451 470 SRPK1 SRSF protein kinase 1 yes no 3 8.4325E-07 64.83 2 1.7043 1.8094 4.5109 2 Median 1.7043 1.8094 4.5109 2 0 Median NaN NaN NaN 0 0 Median 67753000 22639000 45114000 67753000 22639000 45114000 0 0 0 304 1988 311 752;753 1174;1175;1176 1176 3 AEISFEDRK AGAGGLAIAVEGPSKAEISFEDRKDGSCGV VEGPSKAEISFEDRKDGSCGVAYVVQEPGD K A E R K D 1 1 0 1 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 9 1 1093.5404 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5C6;Q2VP91 P21333 2281 2289 FLNA;FLJ00119 Filamin-A yes no 2 0.0078935 69.598 2 1.1894 1.2889 NaN 1 Median 1.1894 1.2889 NaN 1 0 Median NaN NaN NaN 0 0 Median 27546000 7686800 19859000 27546000 7686800 19859000 0 0 0 305 1504 312 754;755 1177;1178 1178 2 AEIYEAFENIYPILK IFVSGKVVLTGAKVRAEIYEAFENIYPILK AEIYEAFENIYPILKGFRKTT_________ R A E L K G 2 0 1 0 0 0 3 0 0 3 1 1 0 1 1 0 0 0 2 0 0 0 15 0 1811.9346 H0Y6D8;Q32MN6;B4DPC1;Q5U0C8;Q32MN7;P20226 H0Y6D8 81 95 TBP TATA-box-binding protein yes no 2 5.1571E-06 96.64 1 0.60079 0.60606 NaN 1 Median 0.60079 0.60606 NaN 1 0 Median NaN NaN NaN 0 0 Median 16251000 10063000 6188000 16251000 10063000 6188000 0 0 0 306 1020 313 756 1179;1180;1181 1180 3 AELAELPLR KIFSFAHQTISALIKAELAELPLRLFLQGA ISALIKAELAELPLRLFLQGALAAGEIGFE K A E L R L 2 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1010.576 Q96QK1;Q5HYM2;Q53FR4 Q96QK1 574 582 VPS35;DKFZp686O2462 Vacuolar protein sorting-associated protein 35 yes no 2 0.011752 61.962 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 307 1985 314 757 1182 1182 1 AELDDTPMR GFIKLESRALAEIAKAELDDTPMRGRQLRV LAEIAKAELDDTPMRGRQLRVRFATHAAAL K A E M R G 1 1 0 2 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 9 0 1046.4703 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 277 285 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.01002 50.04 1 2.3348 2.4493 NaN 1 Median 2.3348 2.4493 NaN 1 0 Median NaN NaN NaN 0 0 Median 11054000 2550700 8503000 11054000 2550700 8503000 0 0 0 308 1510 315 758 1183;1184 1184 1279 2 AELEIQK PGPTLWASYSLEYGKAELEIQKDALEPGQR SYSLEYGKAELEIQKDALEPGQRVVVVDDL K A E Q K D 1 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 829.45453 H3BQB1;P07741;H3BQZ9 H3BQB1 108 114 APRT Adenine phosphoribosyltransferase yes no 2 0.026682 76.035 1 3.1439 3.5449 NaN 1 Median 3.1439 3.5449 NaN 1 0 Median NaN NaN NaN 0 0 Median 67283000 13959000 53323000 67283000 13959000 53323000 0 0 0 309 1302 316 759 1185;1186 1186 2 AELFQQEQQSADK SDALMSPPPKSSLPKAELFQQEQQSADKPA PKAELFQQEQQSADKPASLPPASQASNHRD K A E D K P 2 0 0 1 0 4 2 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1520.7107 Q9BTC0 Q9BTC0 1532 1544 DIDO1 Death-inducer obliterator 1 yes yes 2 1.6314E-23 154.15 1 2 2.1278 1.6821 60.141 3 Median 0.75015 0.76343 NaN 1 0 Median 2.554 2.0448 27.614 2 0 Median 23839000 10913000 12926000 16913000 8695300 8217300 6926700 2217900 4708800 310 2002 317 760;761;762 1187;1188;1189;1190;1191 1187 5 AELGEYIR AILWSLSGDSRLKMRAELGEYIRRITTVPL DSRLKMRAELGEYIRRITTVPLPTAPNIPI R A E I R R 1 1 0 0 0 0 2 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 949.4869 Q14204 Q14204 2512 2519 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.030732 58.815 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11113000 0 11113000 11113000 0 11113000 0 0 0 311 1729 318 763;764 1192;1193 1192 2 AELGTDLLSQLSLEDQK EASLHAMESTRESLKAELGTDLLSQLSLED LGTDLLSQLSLEDQKRVDALNDEIRQLQQE K A E Q K R 1 0 0 2 0 2 2 1 0 0 5 1 0 0 0 2 1 0 0 0 0 0 17 0 1858.9524 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 779 795 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 4.0494E-05 79.614 2 2.0504 1.6776 12.118 2 Median NaN NaN NaN 0 0 Median 2.0504 1.6776 12.118 2 0 Median 59898000 21313000 38585000 0 0 0 59898000 21313000 38585000 312 803 319 765;766 1194;1195 1194 1 AELIVQPELK TIQELLQNCSDCLMRAELIVQPELKYGDGI DCLMRAELIVQPELKYGDGIQLTRSRELDE R A E L K Y 1 0 0 0 0 1 2 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1138.6598 P15924;Q4LE79;B4E2A0;Q6ZP16;G1UI31 P15924 85 94 DSP;DSP variant protein Desmoplakin yes no 2 9.7206E-05 97.431 2 2 0.50519 0.45368 18.922 4 Median 0.51934 0.53959 5.4 2 0 Median 0.49017 0.39078 1.9842 2 0 Median 55026000 34179000 20847000 50259000 30749000 19510000 4767200 3429700 1337500 313 1486 320 767;768;769;770 1196;1197;1198;1199;1200 1198 5 AELLLLK PLSTPMPKKRGRKSKAELLLLKLSKDLDRP KKRGRKSKAELLLLKLSKDLDRPESQSPKR K A E L K L 1 0 0 0 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 7 0 798.52149 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 149 155 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.027742 73.039 1 0.86024 0.88871 NaN 1 Median 0.86024 0.88871 NaN 1 0 Median NaN NaN NaN 0 0 Median 24994000 12273000 12721000 24994000 12273000 12721000 0 0 0 314 1938 321 771 1201 1201 1 AELNEFLTR QISKKRKFVADGIFKAELNEFLTRELAEDG ADGIFKAELNEFLTRELAEDGYSGVEVRVT K A E T R E 1 1 1 0 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1091.5611 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;H0YEU2;E9PQ96;E9PJH4;E9PK82;E9PQX2;H0YES8 P23396 19 27 RPS3 40S ribosomal protein S3 yes no 2 1.7956E-12 161.79 2 2 1.0501 1.0581 20.473 4 Median 1.0767 1.2636 4.0641 2 0 Median 1.0346 0.88992 3.4439 2 0 Median 814720000 395650000 419080000 755330000 365880000 389450000 59393000 29765000 29627000 315 1511 322 772;773;774;775 1202;1203;1204;1205;1206;1207;1208;1209 1203 8 AELNSTTEELHK TQQLQEVKAKLQQCKAELNSTTEELHKYQK QCKAELNSTTEELHKYQKMLEPPPSAKPFT K A E H K Y 1 0 1 0 0 0 3 0 1 0 2 1 0 0 0 1 2 0 0 0 0 0 12 0 1370.6678 O95235 O95235 701 712 KIF20A Kinesin-like protein KIF20A yes yes 2;3 4.1983E-18 146.11 3 4 0.81728 0.82253 15.303 7 Median 0.73845 0.82801 6.1481 3 0 Plateau 1.1048 0.86818 20.617 4 0 Median 232830000 129470000 103350000 168150000 98449000 69699000 64679000 31024000 33655000 316 1421 323 776;777;778;779;780;781;782 1210;1211;1212;1213;1214;1215;1216;1217;1218;1219;1220;1221 1210 12 AELNTHVNVK ______________________________ ______________________________ M A E V K E 1 0 2 0 0 0 1 0 1 0 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1123.5986 A0A024R3V0;Q9NUQ6;C9JKE4;F8VZ02;F8VT91;C9JGM8;F8W6C2;C9IZC3;C9J8M7;F2Z2S1;Q4ZFW0;F8WAV0 A0A024R3V0 2 11 DNAPTP6;SPATS2L;DKFZP564A2416 SPATS2-like protein yes no 2 2.4648E-06 113.93 1 0.78745 0.8122 NaN 1 Median 0.78745 0.8122 NaN 1 0 Median NaN NaN NaN 0 0 Median 18263000 9734600 8528900 18263000 9734600 8528900 0 0 0 317 141 324 783 1222 1222 1 AELVQLVSPFLGK FLRCLVIFNQEVISRAELVQLVSPFLGKFP SRAELVQLVSPFLGKFPELFNWFKNFLGYK R A E G K F 1 0 0 0 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 2 0 0 13 0 1399.8075 Q96ST3 Q96ST3 498 510 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.00014426 83 2 0.85169 0.85541 19.093 2 Median 0.85169 0.85541 19.093 2 0 Median NaN NaN NaN 0 0 Median 10494000 5253100 5240400 10494000 5253100 5240400 0 0 0 318 1990 325 784;785 1223;1224;1225;1226 1226 4 AENAGLSSTAGLLR LERIARLEDKVKTLKAENAGLSSTAGLLRE KAENAGLSSTAGLLREQVAQLKQKVMTHVS K A E L R E 3 1 1 0 0 0 1 2 0 0 3 0 0 0 0 2 1 0 0 0 0 0 14 0 1358.7154 Q5U079;Q53HP8;P17275 Q5U079 305 318 JUNB Transcription factor jun-B yes no 2 0.0012489 55.04 2 2 1.0616 1.0072 17.082 4 Median 0.88208 0.89716 13.454 2 0 Median 1.3355 1.1278 13.074 2 0 Median 38555000 21623000 16932000 26277000 15456000 10820000 12278000 6166400 6111600 319 1491 326 786;787;788;789 1227;1228;1229;1230;1231 1231 5 AENFFILR EKILCHKFMRFMMMRAENFFILRRKPVEII MRFMMMRAENFFILRRKPVEIIL_______ R A E L R R 1 1 1 0 0 0 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1008.5393 F8WDD7;F8WCF6;A0A0A6YYG9;P59998;R4GN08 F8WDD7 98 105 ARPC4;ARPC4-TTLL3 Actin-related protein 2/3 complex subunit 4 yes no 2 0.0050709 91.626 1 1.5335 1.6033 NaN 1 Median 1.5335 1.6033 NaN 1 0 Median NaN NaN NaN 0 0 Median 13082000 5723300 7358800 13082000 5723300 7358800 0 0 0 320 492 327 790 1232 1232 1 AENLVLSTNLR SSKMSELQTYVDSLKAENLVLSTNLRNFQG DSLKAENLVLSTNLRNFQGDLVKEMQLGLE K A E L R N 1 1 2 0 0 0 1 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 11 0 1228.6776 P49454 P49454 1444 1454 CENPF Centromere protein F yes no 2 0.00040908 80.763 2 1 0.96433 0.96673 33.602 3 Median 0.92689 0.92938 5.5728 2 0 Median 1.8579 1.6566 NaN 1 0 Median 36516000 18215000 18301000 34179000 17403000 16776000 2336600 811520 1525100 321 1581 328 791;792;793 1233;1234;1235 1233 3 AENNSEVGASGYGVPGPTWDR PTTMGGPLPPHLALKAENNSEVGASGYGVP VGASGYGVPGPTWDRGANLKDYYSRKEEQE K A E D R G 2 1 2 1 0 0 2 4 0 0 0 0 0 0 2 2 1 1 1 2 0 0 21 0 2161.9665 Q08211;Q58F26;Q6PJK6 Q08211 121 141 DHX9 ATP-dependent RNA helicase A yes no 2 2.209E-11 96.673 2 2 1.2947 1.199 8.3387 4 Median 1.0456 1.1147 2.3327 2 0 Median 1.5573 1.2841 1.7414 2 0 Median 102880000 46439000 56442000 69538000 32294000 37244000 33342000 14144000 19198000 322 1691 329 794;795;796;797 1236;1237;1238;1239;1240;1241;1242;1243;1244 1242 9 AENPYLFLR TGHGNLRPRKTRPLKAENPYLFLRGLPYLV KTRPLKAENPYLFLRGLPYLVNEDDVRVFF K A E L R G 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 9 0 1121.5869 B9ZVT1;Q8IXT5 B9ZVT1 152 160 RBM12B RNA-binding protein 12B yes no 2 0.003213 74.127 4 2 1.0911 1.0775 10.081 3 Plateau 1.0911 1.0775 NaN 1 0 Median 1.0604 0.92813 7.4052 2 0 Median 24282000 10504000 13777000 19878000 8612100 11266000 4404300 1892400 2511800 323 1122 330 798;799;800;801;802;803 1245;1246;1247;1248;1249;1250;1251;1252 1246 8 AENSSLNLIGK EVGLVVGNSQVAFEKAENSSLNLIGKAKTK AFEKAENSSLNLIGKAKTKENRQSIINPDW K A E G K A 1 0 2 0 0 0 1 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1144.6088 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;B4DGR3 I3L0N3 183 193 NSF Vesicle-fusing ATPase yes no 2 0.0017859 64.841 1 1.3204 1.3764 NaN 1 Median 1.3204 1.3764 NaN 1 0 Median NaN NaN NaN 0 0 Median 12278000 4970800 7307500 12278000 4970800 7307500 0 0 0 324 1096 331 804 1253 1253 1 AENYDIPSADR SNFHMDFIVAASNLRAENYDIPSADRHKSK SNLRAENYDIPSADRHKSKLIAGKIIPAIA R A E D R H 2 1 1 2 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1249.5575 A0A024R1A3;P22314;B4DDE4;B4DL67;Q5JRR6;B3KUJ2;Q8WY81 A0A024R1A3 870 880 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.0251 41.399 1 1.2778 1.1293 NaN 1 Median NaN NaN NaN 0 0 Median 1.2778 1.1293 NaN 1 0 Median 1596400 663970 932400 0 0 0 1596400 663970 932400 325 74 332 805 1254;1255 1254 2 AEPAAPPAAPSTPAPPPAVPK KRLDEKFGAPDKRLKAEPAAPPAAPSTPAP PAAPSTPAPPPAVPKELPAPPAPPPASAPT K A E P K E 7 0 0 0 0 0 1 0 0 0 0 1 0 0 9 1 1 0 0 1 0 0 21 0 1933.0309 P48634 P48634 506 526 PRRC2A Protein PRRC2A yes yes 2 1.3789E-06 50.102 2 1.5376 1.5338 8.468 2 Median 1.5376 1.5338 8.468 2 0 Median NaN NaN NaN 0 0 Median 17481000 7574800 9905900 17481000 7574800 9905900 0 0 0 326 1576 333 806;807 1256;1257;1258;1259 1256 4 AEPEAGEEQAGDDRDSGGPVLQFDYEAVANR SQKRSEKPPAGSICRAEPEAGEEQAGDDRD GGPVLQFDYEAVANRLFEMASRQSTPSQNR R A E N R L 5 2 1 4 0 2 5 4 0 0 1 0 0 1 2 1 0 0 1 2 0 0 31 1 3291.4552 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 281 311 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 3 1.4804E-36 107.45 2 2 0.95578 0.92749 11.156 4 Median 0.79675 0.89814 10.538 2 0 Median 1.1249 0.97938 13.688 2 0 Median 313890000 153720000 160170000 207620000 106130000 101490000 106270000 47598000 58674000 327 1618 334 808;809;810;811 1260;1261;1262;1263;1264;1265;1266;1267;1268;1269;1270;1271 1264 12 AEPEDHYFLLTEPPLNTPENR LMERFMEQVIFKYLRAEPEDHYFLLTEPPL YFLLTEPPLNTPENREYTAEIMFESFNVPG R A E N R E 1 1 2 1 0 0 4 0 1 0 3 0 0 1 4 0 2 0 1 0 0 0 21 0 2481.1812 A0A024RAI1;P61158;B4DT29;B4DXW1;Q59FV6;F8WDR7 A0A024RAI1 103 123 ACTR3 Actin-related protein 3 yes no 3 2.7704E-07 54.834 2 2 2.0346 1.9168 9.8347 4 Median 1.848 1.8965 2.3305 2 0 Median 2.4238 2.0973 13.545 2 0 Median 41882000 13918000 27964000 32512000 11144000 21368000 9369300 2773800 6595600 328 304 335 812;813;814;815 1272;1273;1274;1275 1273 4 AEPGEGTRPATVGDSSAR SGEKPPAGSEQDGWKAEPGEGTRPATVGDS GEGTRPATVGDSSARPARRVLLPTPPCGAL K A E A R P 3 2 0 1 0 0 2 3 0 0 0 0 0 0 2 2 2 0 0 1 0 0 18 1 1756.834 Q9BTC0 Q9BTC0 1636 1653 DIDO1 Death-inducer obliterator 1 yes yes 3 1.9176E-05 46.621 2 1.8519 1.6278 6.1493 2 Median NaN NaN NaN 0 0 Median 1.8519 1.6278 6.1493 2 0 Median 11497000 3737200 7759300 0 0 0 11497000 3737200 7759300 329 2002 336 816;817 1276;1277;1278 1278 3 AEPGFEPADCK LHPPPPPPPPPAELKAEPGFEPADCKRKEE AELKAEPGFEPADCKRKEEAGAPGGGAGMA K A E C K R 2 0 0 1 1 0 2 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 11 0 1219.5179 P17676 P17676 175 185 CEBPB CCAAT/enhancer-binding protein beta yes yes 2 0.0073354 52.79 1 2 1.5552 1.2118 6.4445 3 Median 1.1737 1.1823 NaN 1 0 Median 1.6334 1.2722 6.8786 2 0 Median 14484000 6856900 7627600 7263300 4024600 3238700 7221200 2832300 4388900 330 1493 337 818;819;820 1279;1280;1281;1282;1283;1284 1279 6 AEPSFYPR TVIGDTVTGLLERCKAEPSFYPRNCLMQLI GLLERCKAEPSFYPRNCLMQLIQTHVLSYS K A E P R N 1 1 0 0 0 0 1 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 8 0 965.46068 Q9H8H0;J3QR28 Q9H8H0 446 453 NOL11 Nucleolar protein 11 yes no 2 0.013558 65.038 2 1 0.92547 1.037 2.4735 3 Plateau 0.91006 1.037 3.0182 2 0 Median 1.1979 1.0148 NaN 1 0 Median 282710000 139200000 143510000 273350000 134800000 138550000 9357100 4399900 4957200 331 2042 338 821;822;823 1285;1286;1287;1288 1285 4 AEPTAAPHPVLK EQRLLQQGTAPAQAKAEPTAAPHPVLKQVI QAKAEPTAAPHPVLKQVIKPRRKLAFRSGE K A E L K Q 3 0 0 0 0 0 1 0 1 0 1 1 0 0 3 0 1 0 0 1 0 0 12 0 1229.6768 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 488 499 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.00019045 76.815 2 1 0.81636 0.8401 66.416 3 Median 0.65053 0.66752 32.519 2 0 Median 2.5109 1.9641 NaN 1 0 Median 29820000 18359000 11461000 26435000 17181000 9254100 3385200 1178200 2207000 332 229 339 824;825;826 1289;1290;1291;1292;1293 1291 5 AEPVEVVAPR LFLAHILSPWGAEVKAEPVEVVAPRGKSGA GAEVKAEPVEVVAPRGKSGAALSKKSKGQV K A E P R G 2 1 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 3 0 0 10 0 1065.5819 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 487 496 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.0007117 82.452 2 0.85288 1.0107 NaN 1 Median 0.85288 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median 817760000 598720000 219030000 817760000 598720000 219030000 0 0 0 333 139 340 827;828 1294;1295;1296 1295 3 AEPYCSVLPGFTFIQHLPLSER VLVKNCAVEFNFGQRAEPYCSVLPGFTFIQ LPGFTFIQHLPLSERIRGTVGPKSKAECEI R A E E R I 1 1 0 0 1 1 2 1 1 1 3 0 0 2 3 2 1 0 1 1 0 0 22 0 2560.2784 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0;M0QYZ0 M0R3F1 236 257 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 1.2669E-07 73.405 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 334 49 341 829 1297 1297 1 AEQAFQASQIK QLENNLEEFKQKLCRAEQAFQASQIKENEL KLCRAEQAFQASQIKENELRRSMEEMKKEN R A E I K E 3 0 0 0 0 3 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1219.6197 P49454 P49454 463 473 CENPF Centromere protein F yes yes 2 1.4137E-05 107.21 2 2 1.1822 1.2749 23.789 3 Median 1.0963 1.1571 13.71 2 0 Median 2.0103 1.6857 NaN 1 0 Median 40259000 19385000 20874000 36425000 18572000 17853000 3834000 812750 3021200 335 1581 342 830;831;832;833 1298;1299;1300;1301;1302;1303;1304 1300 7 AEQEEYVQEGIR VNEKLQQIFIELTLKAEQEEYVQEGIRWTP TLKAEQEEYVQEGIRWTPIEYFNNKIVCDL K A E I R W 1 1 0 0 0 2 4 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 12 0 1449.6736 Q4KMR3;Q12965;Q6ZNI9;O00160;H0YLE5;M0QXU2 Q4KMR3 423 434 MYO1E;FLJ00395;MYO1F Unconventional myosin-Ie;Unconventional myosin-If yes no 2 4.3676E-20 137.98 2 1 0.85485 0.92479 NaN 1 Median 0.85485 0.92479 NaN 1 0 Median NaN NaN NaN 0 0 Median 41788000 19480000 22309000 39889000 17580000 22309000 1899900 1899900 0 336 1703 343 834;835;836 1305;1306;1307;1308 1305 4 AEQEIAALVEQLTPIER EEAGRPGAEDEEMSRAEQEIAALVEQLTPI QEIAALVEQLTPIERYAMKFLEASLEEVSR R A E E R Y 3 1 0 0 0 2 4 0 0 2 2 0 0 0 1 0 1 0 0 1 0 0 17 0 1909.0157 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4 A0A0A0MS59 2039 2055 SRCAP Helicase SRCAP yes no 2 1.0702E-06 83.499 2 0.61943 0.63172 NaN 1 Median 0.61943 0.63172 NaN 1 0 Median NaN NaN NaN 0 0 Median 9721700 3775400 5946200 9721700 3775400 5946200 0 0 0 337 476 344 837;838 1309;1310;1311;1312 1312 4 AEQGSEEEGEGEEEEEEGGESK KEKEPPKQGKEKAKKAEQGSEEEGEGEEEE EGEGEEEEEEGGESKADDPYAHLSKKEKKK K A E S K A 1 0 0 0 0 1 12 5 0 0 0 1 0 0 0 2 0 0 0 0 0 0 22 0 2352.8837 Q8NE71;B4DNU2;Q5STZ8 Q8NE71 224 245 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.0062044 38.028 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1853700 0 1853700 1853700 0 1853700 0 0 0 338 1926 345 839 1313 1313 1 AEQINQAAGEASAVLAK EGKKQAQILASEAEKAEQINQAAGEASAVL QINQAAGEASAVLAKAKAKAEAIRILAAAL K A E A K A 6 0 1 0 0 2 2 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 17 0 1669.8635 Q9UJZ1;A0A087WYB4;F2Z2I8;Q6ZNW0 Q9UJZ1 234 250 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 4.6665E-09 97.69 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7032300 0 7032300 7032300 0 7032300 0 0 0 339 2104 346 840 1314 1314 1 AEQLAAEAER PGQSGMDDMKLLEQRAEQLAAEAERDQPLR LLEQRAEQLAAEAERDQPLRAQSKILFVRS R A E E R D 4 1 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1086.5306 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 627 636 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 0.0020262 82.749 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3834300 0 3834300 3834300 0 3834300 0 0 0 340 1838 347 841 1315 1315 1 AEQLGAEGNVDESQK KVHELNEEIGKLLAKAEQLGAEGNVDESQK AEQLGAEGNVDESQKILMEVEKVRAKKKEA K A E Q K I 2 0 1 1 0 2 3 2 0 0 1 1 0 0 0 1 0 0 0 1 0 0 15 0 1573.722 B8ZZ09;B8ZZ10;A8MYV2;D3DU41;Q1W6G4;Q53G47;Q9NQ29 B8ZZ09 54 68 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 2 0.00022118 70.622 3 0.49444 0.49882 NaN 1 Median 0.49444 0.49882 NaN 1 0 Median NaN NaN NaN 0 0 Median 12624000 10757000 1866600 12624000 10757000 1866600 0 0 0 341 800 348 842;843;844 1316;1317;1318;1319 1316 4 AEQMHQSFVAETSQR ELVQIKGEIEENLMKAEQMHQSFVAETSQR AEQMHQSFVAETSQRISKLQEDTSAHQNVV K A E Q R I 2 1 0 0 0 3 2 0 1 0 0 0 1 1 0 2 1 0 0 1 0 0 15 0 1747.7948 P49454 P49454 870 884 CENPF Centromere protein F yes yes 2 0.00022437 56.951 1 1.3697 1.3611 NaN 1 Median 1.3697 1.3611 NaN 1 0 Median NaN NaN NaN 0 0 Median 7456700 3518600 3938100 7456700 3518600 3938100 0 0 0 342 1581 349 845 1320 1320 1360 1 AESEASLLNVSTPK KTSIPVKDIKLTQSKAESEASLLNVSTPKS KAESEASLLNVSTPKSTRRSGRISSTPTTE K A E P K S 2 0 1 0 0 0 2 0 0 0 2 1 0 0 1 3 1 0 0 1 0 0 14 0 1444.7409 Q96QE3;H0UIC2;A0A075B754 Q96QE3 579 592 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 3.5632E-06 97.911 1 1 3.1528 2.4599 NaN 1 Median NaN NaN NaN 0 0 Median 3.1528 2.4599 NaN 1 0 Median 11082000 944920 10137000 7303800 0 7303800 3778000 944920 2833100 343 1984 350 846;847 1321;1322;1323;1324 1321 4 AESGDSLGSEDRDLLYSIDAYR ESPKPGKFQRTRVPRAESGDSLGSEDRDLL GSEDRDLLYSIDAYRSQRFKETERPSIKQV R A E Y R S 2 2 0 4 0 0 2 2 0 1 3 0 0 0 0 4 0 0 2 0 0 0 22 1 2431.1139 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6 B4DSL6 533 554 ANLN Actin-binding protein anillin yes no 3 0.0017187 28.412 1 1.6731 1.8646 NaN 1 Median 1.6731 1.8646 NaN 1 0 Median NaN NaN NaN 0 0 Median 8378600 2830700 5547900 8378600 2830700 5547900 0 0 0 344 294 351 848 1325;1326;1327 1327 3 AESLIGVYPEQGDCVISK FQAIVISLKEEFYTKAESLIGVYPEQGDCV LIGVYPEQGDCVISKVLTFDLTKYPDANPN K A E S K V 1 0 0 1 1 1 2 2 0 2 1 1 0 0 1 2 0 0 1 2 0 0 18 0 1963.9561 Q14683;G8JLG1 Q14683 1197 1214 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0040491 51.463 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 345 1739 352 849 1328 1328 1 AESLQQEVEALK AIEMATLDKEMAEERAESLQQEVEALKERV EERAESLQQEVEALKERVDELTTDLEILKA R A E L K E 2 0 0 0 0 2 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1343.6933 Q6AWB3;Q6AWB1;E7EX90;Q6MZZ3;Q14203;Q59F36 Q6AWB3 281 292 DKFZp686E191;DKFZp686E0752;DCTN1;DKFZp686I0746 Dynactin subunit 1 yes no 2 0.0098018 57.174 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 346 1226 353 850 1329 1329 1 AESTLQNSSSAVHTESNK CRRIIPPKMKNTSSKAESTLQNSSSAVHTE TLQNSSSAVHTESNKLQPKRTADAMNLSVD K A E N K L 2 0 2 0 0 1 2 0 1 0 1 1 0 0 0 5 2 0 0 1 0 0 18 0 1888.8763 A0A0C4DFX7;Q9H967;C9JE56 A0A0C4DFX7 41 58 WDR76 WD repeat-containing protein 76 yes no 2;3 4.3845E-64 164.68 4 3 0.72953 0.73894 15.024 7 Median 0.68761 0.71264 6.5416 4 0 Median 1.1455 0.92318 2.3943 3 0 Median 108130000 60171000 47957000 88789000 51100000 37689000 19340000 9071900 10268000 347 508 354 851;852;853;854;855;856;857 1330;1331;1332;1333;1334;1335;1336;1337;1338 1332 9 AETECQNTEYQQLLDIK QAQISALEEQLQQIRAETECQNTEYQQLLD TECQNTEYQQLLDIKIRLENEIQTYRSLLE R A E I K I 1 0 1 1 1 3 3 0 0 1 2 1 0 0 0 0 2 0 1 0 0 0 17 0 2081.9575 CON__P13645;P13645 CON__P13645 423 439 KRT10 Keratin, type I cytoskeletal 10 yes no 2 1.1782E-144 233.37 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 611530000 611530000 0 332470000 332470000 0 279060000 279060000 0 + 348 1161 355 858;859;860;861 1339;1340;1341;1342;1343;1344;1345 1342 7 AETHENEPGPLTVGDELLSQFK EQEPQEMDIDEILKRAETHENEPGPLTVGD PGPLTVGDELLSQFKVANFSNMDEDDIELE R A E F K V 1 0 1 1 0 1 4 2 1 0 3 1 0 1 2 1 2 0 0 1 0 0 22 0 2410.1652 O14646 O14646 999 1020 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 1.3372E-07 55.988 2 0.78461 0.7938 2.5577 2 Median 0.78461 0.7938 2.5577 2 0 Median NaN NaN NaN 0 0 Median 27392000 15209000 12183000 27392000 15209000 12183000 0 0 0 349 1366 356 862;863 1346;1347 1347 2 AETLEFNDVYQEVK ______________________________ MAETLEFNDVYQEVKGSMNDGRLRLSRQGI M A E V K G 1 0 1 1 0 1 3 0 0 0 1 1 0 1 0 0 1 0 1 2 0 0 14 0 1683.7992 A0A024R4Z6;Q08945 A0A024R4Z6 2 15 SSRP1 FACT complex subunit SSRP1 yes no 2 1.0993E-22 150.46 2 2 0.83724 0.80115 1.9378 4 Median 0.71053 0.79972 3.1284 2 0 Median 0.97393 0.80115 1.2029 2 0 Median 255180000 143790000 111390000 186230000 108630000 77600000 68946000 35157000 33789000 350 167 357 864;865;866;867 1348;1349;1350;1351;1352;1353;1354;1355 1349 8 AETPTESVSEPEVATK GDQPTTPPKPLKTSKAETPTESVSEPEVAT ETPTESVSEPEVATKQELQEEEEQTKPPRR K A E T K Q 2 0 0 0 0 0 4 0 0 0 0 1 0 0 2 2 3 0 0 2 0 0 16 0 1673.7996 B4E135;M0R0Q7;Q59HG7;P18858 B4E135 161 176 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.00023059 70.438 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6323000 0 6323000 6323000 0 6323000 0 0 0 351 1066 358 868 1356 1356 1 AETQGANHTPVISAHQTR ERPGTRVSERLRGARAETQGANHTPVISAH QGANHTPVISAHQTRSTTTPPRCSPARERV R A E T R S 3 1 1 0 0 2 1 1 2 1 0 0 0 0 1 1 3 0 0 1 0 0 18 0 1916.9453 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4 A0A0A0MS59 2145 2162 SRCAP Helicase SRCAP yes no 3 0.043656 24.594 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 440770 0 440770 0 0 0 440770 0 440770 352 476 359 869 1357 1357 1 AETSEGSGSAPAVPEASASPK QPSAHHSAEPAEAGKAETSEGSGSAPAVPE SGSAPAVPEASASPKQRRSIIRDRGPMYDD K A E P K Q 5 0 0 0 0 0 3 2 0 0 0 1 0 0 3 5 1 0 0 1 0 0 21 0 1928.8963 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;I6LM39;A0A087WVW7;B5MCB4;A0A0S2Z401;A0A0D9SFX7;D5L9I4;A0A0S2Z3U3;A0A075BPH5 A0A140VKC4 74 94 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.060658 19.323 1 0.46368 0.36881 NaN 1 Median NaN NaN NaN 0 0 Median 0.46368 0.36881 NaN 1 0 Median 3112000 1992100 1120000 0 0 0 3112000 1992100 1120000 353 623 360 870 1358 1358 1 AEVAPEEDERK SVTVSDRPLGVSITKAEVAPEEDERKKRRR SITKAEVAPEEDERKKRRRERNKIAAAKCR K A E R K K 2 1 0 1 0 0 4 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 11 1 1271.5994 A0A0A0MRJ2;Q5VTZ4;P18847;Q7Z567 A0A0A0MRJ2 51 61 ATF3 Cyclic AMP-dependent transcription factor ATF-3 yes no 3 0.042229 30.889 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1907300 1907300 0 1907300 1907300 0 0 0 0 354 466 361 871 1359;1360 1359 2 AEVEQVELPDGK KRKAGSTSWTGFQTKAEVEQVELPDGKKRR QTKAEVEQVELPDGKKRRKVLALPSHRGPK K A E G K K 1 0 0 1 0 1 3 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 12 0 1312.6511 A0A024R753;Q9NW13 A0A024R753 654 665 RBM28 RNA-binding protein 28 yes no 2 6.2813E-48 191.52 3 2 0.98911 0.93887 11.328 4 Median 0.77017 0.85993 5.1524 2 0 Median 1.275 1.0297 5.7984 2 0 Median 133780000 71657000 62121000 119040000 65134000 53903000 14742000 6523700 8218100 355 214 362 872;873;874;875;876 1361;1362;1363;1364;1365;1366;1367;1368;1369;1370;1371;1372 1362 12 AEVEQVELPDGKK KRKAGSTSWTGFQTKAEVEQVELPDGKKRR TKAEVEQVELPDGKKRRKVLALPSHRGPKI K A E K K R 1 0 0 1 0 1 3 1 0 0 1 2 0 0 1 0 0 0 0 2 0 0 13 1 1440.746 A0A024R753;Q9NW13 A0A024R753 654 666 RBM28 RNA-binding protein 28 yes no 2;3 1.3208E-08 117.25 2 3 0.89273 1.0076 17.649 5 Median 0.88493 1.0171 1.3282 2 0 Median 1.2591 1.0872 23.536 3 0 Plateau 58145000 28812000 29333000 47816000 23766000 24050000 10328000 5045500 5283000 356 214 363 877;878;879;880;881 1373;1374;1375;1376;1377;1378;1379 1373 7 AEVLISTVGPEDCVVPFLTRPK GCLPVLAAAGRARGRAEVLISTVGPEDCVV VGPEDCVVPFLTRPKVPVLQLDSGNYLFST R A E P K V 1 1 0 1 1 0 2 1 0 1 2 1 0 1 3 1 2 0 0 4 0 0 22 1 2426.2879 A8K492;P56192;A0A024RBA2;F5H2V6;F8VS26;F8W0M7;F8W0S4;F8VZZ9 A8K492 26 47 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 2.1166E-06 62.362 1 1 1.5421 1.3073 NaN 1 Median NaN NaN NaN 0 0 Median 1.5421 1.3073 NaN 1 0 Median 17162000 1178700 15983000 14126000 0 14126000 3036000 1178700 1857200 357 732 364 882;883 1380;1381;1382;1383;1384 1383 5 AEVQVLVLDGR ______________________________ ______________________________ M A E G R G 1 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 3 0 0 11 0 1197.6717 Q53H34;P40429;Q5QTS3;B4DNC8;M0QZU1;A0A096LPE0 Q53H34 2 12 RPL13A 60S ribosomal protein L13a yes no 2 0.00033794 86.344 3 0.82557 0.81521 3.6486 3 Median 0.82557 0.81521 3.6486 3 0 Median NaN NaN NaN 0 0 Median 37137000 17656000 19482000 37137000 17656000 19482000 0 0 0 358 1558 365;366 884;885;886 1385;1386;1387 1385 3 AEVVETTQVYTEEETR PETGLRLLPLKGAEKAEVVETTQVYTEEET EVVETTQVYTEEETRRAFEETQIDIPGGGS K A E T R R 1 1 0 0 0 1 5 0 0 0 0 0 0 0 0 0 4 0 1 3 0 0 16 0 1882.8796 Q15149;D3DWL0;Q96IE3 Q15149 3686 3701 PLEC;PLEC1 Plectin yes no 2 2.1339E-08 100.55 1 1.4511 1.4618 NaN 1 Median 1.4511 1.4618 NaN 1 0 Median NaN NaN NaN 0 0 Median 7804100 3595700 4208300 7804100 3595700 4208300 0 0 0 359 1754 367 887 1388 1388 1 AEVVETTQVYTEEETRR PETGLRLLPLKGAEKAEVVETTQVYTEEET VVETTQVYTEEETRRAFEETQIDIPGGGSH K A E R R A 1 2 0 0 0 1 5 0 0 0 0 0 0 0 0 0 4 0 1 3 0 0 17 1 2038.9807 Q15149;D3DWL0;Q96IE3 Q15149 3686 3702 PLEC;PLEC1 Plectin yes no 3 1.0719E-07 96.208 2 1 1.9246 2.1421 1.9474 3 Median 1.8928 2.1173 1.648 2 0 Median 2.5635 2.1753 NaN 1 0 Median 117140000 38065000 79080000 108790000 35615000 73174000 8356400 2450500 5905800 360 1754 368 888;889;890 1389;1390;1391;1392;1393 1389 5 AEVVQVIR RRAENLKRRLENERKAEVVQVIRNPAKLKR RLENERKAEVVQVIRNPAKLKRAKKKQLRS K A E I R N 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 8 0 912.53927 Q9H6F5 Q9H6F5 316 323 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.0021178 102.71 2 2 0.64123 0.90158 39.89 4 Linear 0.76327 0.89184 0.58076 2 0 Median 0.52843 0.44708 2.1722 2 0 Median 558090000 321050000 237040000 513160000 291520000 221640000 44931000 29527000 15404000 361 2037 369 891;892;893;894 1394;1395;1396;1397;1398;1399;1400;1401;1402;1403 1395 10 AEWQVYK ELPDSKKKIYQDAYRAEWQVYKEEISRFKE KIYQDAYRAEWQVYKEEISRFKEQLTPSQI R A E Y K E 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 7 0 922.45487 H7BYN3;Q6LES8;E5KSX8;E5KSU5;Q00059 H7BYN3 87 93 TFAM Transcription factor A, mitochondrial yes no 2 0.026656 75.311 1 2 1.4059 1.2796 11.682 2 Median 1.1382 1.1782 NaN 1 0 Median 1.7367 1.3898 NaN 1 0 Median 33907000 14906000 19001000 29259000 14067000 15192000 4648000 839220 3808800 362 1209 370 895;896;897 1404;1405;1406 1404 3 AEYEGDGIPTVFVAVAGR VTSAHKGPDETLRIKAEYEGDGIPTVFVAV EGDGIPTVFVAVAGRSNGLGPVMSGNTAYP K A E G R S 3 1 0 1 0 0 2 3 0 1 0 0 0 1 1 0 1 0 1 3 0 0 18 0 1849.921 E9PBS1;A0A024RD93;P22234;D6RF62 E9PBS1 314 331 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 1.4017E-09 96.756 1 2 1.9881 1.6608 14.745 2 Median NaN NaN NaN 0 0 Median 1.9881 1.6608 14.745 2 0 Median 8500000 2416100 6083900 0 0 0 8500000 2416100 6083900 363 380 371 898;899;900 1407;1408;1409 1407 3 AEYNLTACK PKKSFKTRKQKSSSKAEYNLTACKCLLCKR QKSSSKAEYNLTACKCLLCKRKYSSQIMLK K A E C K C 2 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 9 0 1068.491 Q2TB10;B7Z4V7 Q2TB10 352 360 ZNF800 Zinc finger protein 800 yes no 2 0.0049382 67.993 2 1.6837 1.3526 2.6245 2 Median NaN NaN NaN 0 0 Median 1.6837 1.3526 2.6245 2 0 Median 4980700 1900900 3079700 0 0 0 4980700 1900900 3079700 364 1777 372 901;902 1410;1411 1411 2 AFAETHIK LLMSEDYFTQAMEVKAFAETHIKGFTLNDA TQAMEVKAFAETHIKGFTLNDAANSRLIIT K A F I K G 2 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 8 0 915.48142 E5KNY5;P42704;B4DSR0 E5KNY5 1091 1098 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0070183 83.753 2 2.4587 2.72 NaN 1 Median 2.4587 2.72 NaN 1 0 Median NaN NaN NaN 0 0 Median 76153000 13640000 62513000 76153000 13640000 62513000 0 0 0 365 1207 373 903;904 1412;1413;1414 1412 3 AFAHITGGGLLENIPR YSHSLLPVLRSGHVKAFAHITGGGLLENIP FAHITGGGLLENIPRVLPEKLGVDLDAQTW K A F P R V 2 1 1 0 0 0 1 3 1 2 2 0 0 1 1 0 1 0 0 0 0 0 16 0 1664.8998 Q3B7A7;Q59HH3;P22102;B4DJ93 Q3B7A7 677 692 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 0.0013928 37.555 2 1 1.8459 1.8321 69.657 2 Median 2.5995 2.9981 NaN 1 0 Median 1.3108 1.1195 NaN 1 0 Median 88393000 21818000 66575000 82651000 19427000 63224000 5741700 2390300 3351400 366 1507 374 905;906;907 1415;1416;1417;1418 1416 4 AFALNDLDDYEK RLFVYDVFWLRFSNRAFALNDLDDYEKHFT SNRAFALNDLDDYEKHFTVMNYDPDVVLKQ R A F E K H 2 0 1 3 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1412.646 A0A024R4U3;Q14166 A0A024R4U3 499 510 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 2 0.001473 77.662 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11360000 0 11360000 11360000 0 11360000 0 0 0 367 161 375 908;909 1419;1420 1419 2 AFAMIIDK ERIITLAGPTNAIFKAFAMIIDKLEEDISS PTNAIFKAFAMIIDKLEEDISSSMTNSTAA K A F D K L 2 0 0 1 0 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 8 0 907.48372 Q53SS8;Q15365;H3BRU6;F8VZX2;B4DRD7;F8W0G4;F8VXH9;F8W1G6;H3BND9;Q15366;B4DLC0 Q15366 52 59 PCBP1;PCBP2 Poly(rC)-binding protein 1;Poly(rC)-binding protein 2 no no 2 0.0067309 64.265 1 3.2501 3.6137 NaN 1 Median 3.2501 3.6137 NaN 1 0 Median NaN NaN NaN 0 0 Median 50691000 13724000 36966000 50691000 13724000 36966000 0 0 0 368 1263;1760;1759 376 910 1421 1421 967 1 AFAVGVQQVLLK NVSKEYNEFAEVFLKAFAVGVQQVLLKVLY FLKAFAVGVQQVLLKVLYQYKEKQYMAPRV K A F L K V 2 0 0 0 0 2 0 1 0 0 2 1 0 1 0 0 0 0 0 3 0 0 12 0 1271.7602 O95373 O95373 295 306 IPO7 Importin-7 yes yes 2 3.3169E-06 111.17 2 2 1.6258 1.6382 41.599 3 Plateau 1.6258 1.6382 NaN 1 0 Median 1.021 0.80862 11.736 2 0 Median 32484000 8894100 23590000 25054000 5064400 19990000 7430500 3829700 3600800 369 1424 377 911;912;913;914 1422;1423;1424;1425;1426;1427 1424 6 AFAVQSAVR LQLGDEEDARKRNPKAFAVQSAVRMARSFH RKRNPKAFAVQSAVRMARSFHRTQDLKTKK K A F V R M 3 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 9 0 947.51886 Q14692 Q14692 44 52 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 7.1866E-08 142.64 2 1 0.93308 1.05 5.8101 3 Median 0.9282 1.0463 0.49663 2 0 Median 1.4274 1.1569 NaN 1 0 Median 218450000 115740000 102710000 206560000 110710000 95848000 11888000 5023100 6865000 370 1742 378 915;916;917 1428;1429;1430;1431;1432;1433 1431 6 AFAYTWFNLQAR DEFHPFIEALLPHVRAFAYTWFNLQARKRK HVRAFAYTWFNLQARKRKYFKKHEKRMSKD R A F A R K 3 1 1 0 0 1 0 0 0 0 1 0 0 2 0 0 1 1 1 0 0 0 12 0 1486.7357 Q6FI30;B7Z4T6;P08651;B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857 Q6FI30 17 28 NFIC;NFIA Nuclear factor 1;Nuclear factor 1 C-type;Nuclear factor 1 A-type no no 2 9.0777E-05 96.331 2 1 0.3989 0.41027 23.983 3 Median 0.34053 0.35335 21.124 2 0 Median 0.57839 0.48904 NaN 1 0 Median 38888000 26666000 12222000 33991000 23830000 10162000 4896600 2836400 2060200 371 1091;816 379 918;919;920 1434;1435;1436;1437;1438 1435 5 AFCGFEDPR LVDKIMVDRINLAQKAFCGFEDPRTKTKMS INLAQKAFCGFEDPRTKTKMSAAQALKKGW K A F P R T 1 1 0 1 1 0 1 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 9 0 1097.46 Q15149;D3DWL0;Q96IE3 Q15149 4492 4500 PLEC;PLEC1 Plectin yes no 2 0.0025185 74.127 2 1.7022 1.7447 5.3039 2 Median 1.7022 1.7447 5.3039 2 0 Median NaN NaN NaN 0 0 Median 39983000 15540000 24443000 39983000 15540000 24443000 0 0 0 372 1754 380 921;922 1439;1440;1441 1441 3 AFDLFNPNFK RIRAKFYSVYGSGQRAFDLFNPNFKSTCQR GSGQRAFDLFNPNFKSTCQRFVEKYTELQK R A F F K S 1 0 2 1 0 0 0 0 0 0 1 1 0 3 1 0 0 0 0 0 0 0 10 0 1211.5975 J3QLR8;Q9Y3D9 J3QLR8 84 93 MRPS23 28S ribosomal protein S23, mitochondrial yes no 2 0.0003594 75.213 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 373 1335 381 923 1442 1442 1 AFDLIVDRPVTLVR RRTPVQPNPIVYMMKAFDLIVDRPVTLVR_ KAFDLIVDRPVTLVR_______________ K A F V R - 1 2 0 2 0 0 0 0 0 1 2 0 0 1 1 0 1 0 0 3 0 0 14 1 1612.9301 Q96RX5;H3BV16;H3BPJ9;A8K761;O96000 Q96RX5 30 43 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 3 0.00086612 50.562 2 1.0095 1.1096 2.3943 2 Median 1.0095 1.1096 2.3943 2 0 Median NaN NaN NaN 0 0 Median 26795000 13633000 13162000 26795000 13633000 13162000 0 0 0 374 767 382 924;925 1443;1444 1443 2 AFDPTSTLLATGGCDGAVR ______________________________ TSTLLATGGCDGAVRVWDIVRHYGTHHFRG M A F V R V 3 1 0 2 1 0 0 3 0 0 2 0 0 1 1 1 3 0 0 1 0 0 19 0 1907.9047 A0A087WYP7 A0A087WYP7 2 20 TBL3 yes yes 2 0.0047071 32.275 1 1.1146 0.96363 NaN 1 Median NaN NaN NaN 0 0 Median 1.1146 0.96363 NaN 1 0 Median 4359100 2284200 2074800 0 0 0 4359100 2284200 2074800 375 436 383 926 1445 1445 1 AFDTQLVER DDRPYDPEEEYDPERAFDTQLVERGRRHEV EYDPERAFDTQLVERGRRHEVERAPEAAAA R A F E R G 1 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1077.5455 Q9BTC0 Q9BTC0 1396 1404 DIDO1 Death-inducer obliterator 1 yes yes 2 0.012045 61.679 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 376 2002 384 927 1446 1446 1 AFEDDAIQLVAR SQLQQILRSRLKHLKAFEDDAIQLVARKVA HLKAFEDDAIQLVARKVAALSGDARRCLDI K A F A R K 3 1 0 2 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 12 0 1346.683 B7Z8H0;Q96F82;Q13415;A8K794 B7Z8H0 694 705 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 2.6333E-05 99.815 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4155800 0 4155800 0 0 0 4155800 0 4155800 377 1103 385 928 1447 1447 1 AFEEDQVAGR LEQLRQQEEEKAEARAFEEDQVAGRLKEDV KAEARAFEEDQVAGRLKEDVLEQRGRLQKL R A F G R L 2 1 0 1 0 1 2 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1120.5149 O43818 O43818 102 111 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 8.9167E-06 106.04 2 0.77899 0.66702 3.1701 2 Median NaN NaN NaN 0 0 Median 0.77899 0.66702 3.1701 2 0 Median 52735000 29233000 23502000 0 0 0 52735000 29233000 23502000 378 1389 386 929;930 1448;1449;1450;1451 1450 4 AFEVSENGNLVVSGK TGTVSLEVRLLEASRAFEVSENGNLVVSGK AFEVSENGNLVVSGKVYQWDDPDPRLFDHP R A F G K V 1 0 2 0 0 0 2 2 0 0 1 1 0 1 0 2 0 0 0 3 0 0 15 0 1548.7784 A0A0U1RQF0;P49327 A0A0U1RQF0 943 957 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.7274E-05 110.08 2 1.3132 1.3478 7.4099 2 Median 1.3132 1.3478 7.4099 2 0 Median NaN NaN NaN 0 0 Median 31920000 12660000 19259000 31920000 12660000 19259000 0 0 0 379 587 387 931;932 1452;1453;1454;1455 1455 4 AFGIPIR DDKGTIKLADFGLARAFGIPIRVYTHEAIT LADFGLARAFGIPIRVYTHEAITLWYRSPE R A F I R V 1 1 0 0 0 0 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 7 0 772.45956 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6 A0A024QZP7 152 158 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 0.014977 99.511 2 2 1.2968 1.313 15.603 4 Median 1.2968 1.4646 0.32276 2 0 Median 1.3447 1.1267 6.5094 2 0 Median 193390000 81520000 111870000 176140000 74091000 102050000 17253000 7428900 9824200 380 25 388 933;934;935;936 1456;1457;1458;1459;1460;1461;1462 1457 7 AFGIYLNK NLWEKMRHCSDKELKAFGIYLNKIKSCFTK CSDKELKAFGIYLNKIKSCFTKMTKVFTHQ K A F N K I 1 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 0 0 8 0 924.5069 Q8NG31;H0YCZ2;H0YEY7 Q8NG31 1992 1999 CASC5 Protein CASC5 yes no 2 0.026086 54.787 1 0.94897 0.94986 NaN 1 Median 0.94897 0.94986 NaN 1 0 Median NaN NaN NaN 0 0 Median 7681900 4109200 3572600 7681900 4109200 3572600 0 0 0 381 1928 389 937 1463;1464 1463 2 AFGYYGPLR VGNLGNNGNKTELERAFGYYGPLRSVWVAR KTELERAFGYYGPLRSVWVARNPPGFAFVE R A F L R S 1 1 0 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 2 0 0 0 9 0 1042.5236 B2R6F3;P84103;A0A087X2D0 B2R6F3 29 37 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 2 1.4681E-05 122.79 2 2 0.89915 0.87673 65.544 4 Median 1.3378 1.5558 2.0916 2 0 Median 0.60556 0.50003 0.39663 2 0 Median 573040000 253220000 319820000 540910000 233190000 307710000 32134000 20028000 12107000 382 841 390 938;939;940;941 1465;1466;1467;1468;1469;1470;1471;1472;1473 1469 9 AFHLFCLR KGEDDKLILCDECNKAFHLFCLRPALYEVP LCDECNKAFHLFCLRPALYEVPDGEWQCPA K A F L R P 1 1 0 0 1 0 0 0 1 0 2 0 0 2 0 0 0 0 0 0 0 0 8 0 1062.5433 Q9UIG0 Q9UIG0 1208 1215 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.026264 40.268 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2559200 0 2559200 2559200 0 2559200 0 0 0 383 2103 391 942 1474 1474 1 AFHNEAQVNPER VNAAQDSTDLVAKLRAFHNEAQVNPERKNL KLRAFHNEAQVNPERKNLKWIGLDLSNGKP R A F E R K 2 1 2 0 0 1 2 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 12 0 1410.664 P17987;F5H282;E7EQR6 P17987 469 480 TCP1 T-complex protein 1 subunit alpha yes no 2 4.5768E-05 95.477 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6538400 2908200 3630200 6538400 2908200 3630200 0 0 0 384 1496 392 943;944 1475;1476 1476 2 AFIGFEGVK VIDQDMATRLKPAQKAFIGFEGVKGKKKMS LKPAQKAFIGFEGVKGKKKMSAAEAVKEKW K A F V K G 1 0 0 0 0 0 1 2 0 1 0 1 0 2 0 0 0 0 0 1 0 0 9 0 966.51747 P15924;Q4LE79 P15924 2694 2702 DSP;DSP variant protein Desmoplakin yes no 2 0.016329 53.968 2 0.77364 0.86782 4.7646 2 Median 0.77364 0.86782 4.7646 2 0 Median NaN NaN NaN 0 0 Median 205580000 112230000 93348000 205580000 112230000 93348000 0 0 0 385 1486 393 945;946 1477;1478 1478 2 AFIPAIDSFGFETDLR TQDAPIPGSPLYTIKAFIPAIDSFGFETDL FIPAIDSFGFETDLRTHTQGQAFSLSVFHH K A F L R T 2 1 0 2 0 0 1 1 0 2 1 0 0 3 1 1 1 0 0 0 0 0 16 0 1797.8938 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 824 839 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 4.4366E-12 140.14 2 0.96468 1.0871 0.85415 2 Median 0.96468 1.0871 0.85415 2 0 Median NaN NaN NaN 0 0 Median 190730000 97950000 92780000 190730000 97950000 92780000 0 0 0 386 794 394 947;948 1479;1480;1481;1482 1480 4 AFITNIPFDVK GNRFEPYANPTKRYRAFITNIPFDVKWQSL KRYRAFITNIPFDVKWQSLKDLVKEKVGEV R A F V K W 1 0 1 1 0 0 0 0 0 2 0 1 0 2 1 0 1 0 0 1 0 0 11 0 1263.6863 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 73 83 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 6.9031E-08 114.4 2 2 1.1465 1.1069 39.14 4 Median 1.3785 1.5684 4.0236 2 0 Median 0.97201 0.79725 1.1433 2 0 Median 366610000 155460000 211150000 303790000 123640000 180140000 62820000 31814000 31006000 387 1599 395 949;950;951;952 1483;1484;1485;1486;1487;1488;1489;1490 1490 8 AFIVTDEDIR KNPAVWLNTSQPLCKAFIVTDEDIRKQEER QPLCKAFIVTDEDIRKQEERVQQVRKKLEE K A F I R K 1 1 0 2 0 0 1 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 10 0 1177.5979 Q9UBB5;O60535;Q69YZ5 Q9UBB5 361 370 MBD2;NY-CO-41;DKFZp586O0821 Methyl-CpG-binding domain protein 2 yes no 2 1.4776E-05 101.64 2 2 1.046 0.99815 15.244 4 Median 0.81509 0.87109 11.778 2 0 Median 1.2971 1.0956 5.6988 2 0 Median 94131000 42815000 51316000 78303000 36349000 41954000 15828000 6465700 9362400 388 2096 396 953;954;955;956 1491;1492;1493;1494;1495;1496;1497;1498 1491 8 AFIVTDEDIRK KNPAVWLNTSQPLCKAFIVTDEDIRKQEER PLCKAFIVTDEDIRKQEERVQQVRKKLEEA K A F R K Q 1 1 0 2 0 0 1 0 0 2 0 1 0 1 0 0 1 0 0 1 0 0 11 1 1305.6929 Q9UBB5;O60535;Q69YZ5 Q9UBB5 361 371 MBD2;NY-CO-41;DKFZp586O0821 Methyl-CpG-binding domain protein 2 yes no 2;3 0.012247 56.563 3 0.81161 0.91057 NaN 1 Median 0.81161 0.91057 NaN 1 0 Median NaN NaN NaN 0 0 Median 22392000 5732600 16659000 22392000 5732600 16659000 0 0 0 389 2096 397 957;958;959 1499;1500;1501;1502 1502 4 AFIVWLANGDTLR ELDHATLVRFSPDCRAFIVWLANGDTLRVF CRAFIVWLANGDTLRVFKMTKREDGGYTFT R A F L R V 2 1 1 1 0 0 0 1 0 1 2 0 0 1 0 0 1 1 0 1 0 0 13 0 1474.7932 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;B4DY59;A0A0S2Z5C1;A0A087WXC6 E9PF19 114 126 TBL2 Transducin beta-like protein 2 yes no 2 0.00014894 84.17 2 0.74777 0.76451 NaN 1 Median 0.74777 0.76451 NaN 1 0 Median NaN NaN NaN 0 0 Median 7798100 5875900 1922100 7798100 5875900 1922100 0 0 0 390 582 398 960;961 1503;1504 1504 2 AFLDFHALPYQVVEVNPVR TLYQYKTCPFCSKVRAFLDFHALPYQVVEV FHALPYQVVEVNPVRRAEIKFSSYRKVPIL R A F V R R 2 1 1 1 0 1 1 0 1 0 2 0 0 2 2 0 0 0 1 4 0 0 19 0 2213.1633 Q9H7Z7 Q9H7Z7 118 136 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes yes 3 0.0082998 33.667 1 1 1.2605 1.0663 NaN 1 Median NaN NaN NaN 0 0 Median 1.2605 1.0663 NaN 1 0 Median 6202400 1201400 5001000 3235800 0 3235800 2966600 1201400 1765200 391 2041 399 962;963 1505;1506 1505 2 AFLGELK VHPSEMINNAENLFRAFLGELKTQMTSAVR NNAENLFRAFLGELKTQMTSAVREPKLPVL R A F L K T 1 0 0 0 0 0 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 7 0 776.44324 P78527;B4DL41 P78527 199 205 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.02688 74.415 2 0.67665 0.75104 9.4022 2 Median 0.67665 0.75104 9.4022 2 0 Median NaN NaN NaN 0 0 Median 113270000 66381000 46894000 113270000 66381000 46894000 0 0 0 392 1665 400 964;965 1507;1508 1508 2 AFLGGLNWAFIGVDEAHR FNILLTTYEILLKDKAFLGGLNWAFIGVDE GGLNWAFIGVDEAHRLKNDDSLLYKTLIDF K A F H R L 3 1 1 1 0 0 1 3 1 1 2 0 0 2 0 0 0 1 0 1 0 0 18 0 1971.9955 O14646 O14646 601 618 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 0.0114 32.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2122400 0 2122400 2122400 0 2122400 0 0 0 393 1366 401 966 1509 1509 1 AFLIEEQK GGSMCAKCVRDRIKRAFLIEEQKIVVKVLK VRDRIKRAFLIEEQKIVVKVLKAQAQSQKA R A F Q K I 1 0 0 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 976.52295 A0A024RDH8;P49207;Q5MK14 A0A024RDH8 94 101 RPL34 60S ribosomal protein L34 yes no 1;2 0.00064938 129.4 3 2 0.87631 0.86924 10.307 5 Median 0.83871 0.9887 9.0708 3 0 Median 1.0055 0.83017 0.40766 2 0 Median 1145900000 625880000 520050000 1071900000 588700000 483220000 74003000 37172000 36831000 394 386 402 967;968;969;970;971 1510;1511;1512;1513;1514;1515;1516;1517;1518 1511 9 AFLLESLLK KHNVHSPYKCTICGKAFLLESLLKNHVAAH CTICGKAFLLESLLKNHVAAHGQSLLKCPR K A F L K N 1 0 0 0 0 0 1 0 0 0 4 1 0 1 0 1 0 0 0 0 0 0 9 0 1032.6219 Q96JM3 Q96JM3 746 754 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 2 0.0070864 62.546 2 0.74136 0.7742 9.0857 2 Median 0.74136 0.7742 9.0857 2 0 Median NaN NaN NaN 0 0 Median 8331900 5284200 3047700 8331900 5284200 3047700 0 0 0 395 1974 403 972;973 1519;1520;1521;1522 1522 4 AFLNAIMR GGNIEVLGFNARQRKAFLNAIMRYGMPPQD FNARQRKAFLNAIMRYGMPPQDAFTTQWLV K A F M R Y 2 1 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 8 0 934.50586 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;Q659F1;Q659D0;Q6ZU36;B3KRD4 F5GWX5 1416 1423 CHD4;CHD5;DKFZp434K213;DKFZp434P202 Chromodomain-helicase-DNA-binding protein 4 no no 2 0.00099607 103.29 2 2 1.1344 1.0233 3.9631 3 Median 0.91487 0.97772 NaN 1 0 Median 1.1764 1.0405 2.3637 2 0 Median 72572000 48397000 24175000 68037000 46686000 21351000 4534400 1710700 2823700 396 515 404 974;975;976;977 1523;1524;1525;1526;1527;1528 1523 364 6 AFLQENTHVR SWSPCFSWGCAGEVRAFLQENTHVRLRIFA AGEVRAFLQENTHVRLRIFAARIYDYDPLY R A F V R L 1 1 1 0 0 1 1 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1213.6204 W0HJ78;B0QYD3;Q9UH17;B7ZLZ1;A0A0K0MJ49;P31941;A0A0K0MJ25 W0HJ78 295 304 APOBEC3B;APOBEC3A DNA dC->dU-editing enzyme APOBEC-3B;DNA dC->dU-editing enzyme APOBEC-3A yes no 2 6.7576E-05 83.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 397 807 405 978 1529 1529 1 AFLQGGQEATDIALLLR QSALDCMSVEVGRLRAFLQGGQEATDIALL LQGGQEATDIALLLRDLETSCSDIRQFCKK R A F L R D 3 1 0 1 0 2 1 2 0 1 4 0 0 1 0 0 1 0 0 0 0 0 17 0 1814.989 Q6AWB3;Q6AWB1;E7EX90;Q6MZZ3;Q14203;O95654 Q6AWB3 732 748 DKFZp686E191;DKFZp686E0752;DCTN1;DKFZp686I0746 Dynactin subunit 1 yes no 2 7.4513E-13 107.09 2 2.0094 2.1067 NaN 1 Median 2.0094 2.1067 NaN 1 0 Median NaN NaN NaN 0 0 Median 6073700 1266500 4807100 6073700 1266500 4807100 0 0 0 398 1226 406 979;980 1530;1531;1532 1530 3 AFLTLAEDILR RFFETSAKANINIEKAFLTLAEDILRKTPV NIEKAFLTLAEDILRKTPVKEPNSENVDIS K A F L R K 2 1 0 1 0 0 1 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1260.7078 P61026;Q53T70 P61026 162 172 RAB10 Ras-related protein Rab-10 yes no 2 3.3284E-08 120.12 2 1.962 2.0025 5.1169 2 Median 1.962 2.0025 5.1169 2 0 Median NaN NaN NaN 0 0 Median 29099000 9275700 19823000 29099000 9275700 19823000 0 0 0 399 1627 407 981;982 1533;1534;1535;1536;1537 1536 5 AFLYEPTTQASGR KSLTQARLLSQPPAKAFLYEPTTQASGRAS AKAFLYEPTTQASGRASAGAEQTPGPLSQS K A F G R A 2 1 0 0 0 1 1 1 0 0 1 0 0 1 1 1 2 0 1 0 0 0 13 0 1439.7045 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q9H6H8 B2RWP5 2277 2289 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.013466 51.927 2 2.2828 1.9327 NaN 1 Median NaN NaN NaN 0 0 Median 2.2828 1.9327 NaN 1 0 Median 3035400 905770 2129600 0 0 0 3035400 905770 2129600 400 898 408 983;984 1538;1539 1538 2 AFMGPLK SKFGHGRFQTMEEKKAFMGPLKKDRIAKEE FQTMEEKKAFMGPLKKDRIAKEEGA_____ K A F L K K 1 0 0 0 0 0 0 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 7 0 762.40983 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;B3KS36 P39023 387 393 RPL3;rpl3 60S ribosomal protein L3 no no 2 0.010103 66.994 3 1 1.4663 0.68094 54.41 3 Plateau 0.98684 1.0852 65.903 2 0 Median 0.83315 0.66714 NaN 1 0 Median 1010500000 546730000 463790000 989710000 535460000 454250000 20808000 11268000 9540300 401 1554;936 409;410 985;986;987;988 1540;1541;1542;1543;1544 1540 762 5 AFMGTPVQK MLTPKPAGGDEKDIKAFMGTPVQKLDLAGT DEKDIKAFMGTPVQKLDLAGTLPGSKRQLQ K A F Q K L 1 0 0 0 0 1 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 9 0 977.50044 P46013 P46013 1189 1197 MKI67 Antigen KI-67 yes no 2 3.9392E-25 178.08 3 4 2.6216 2.2916 27.23 7 Median 1.926 2.2694 30.409 3 0 Median 3.2165 2.6094 17.128 4 0 Median 1229900000 408310000 821570000 1111200000 376740000 734440000 118700000 31569000 87134000 402 1569 411;412 989;990;991;992;993;994;995 1545;1546;1547;1548;1549;1550;1551;1552;1553;1554;1555;1556;1557 1547 1327 13 AFMVTDEDIR KNPGVWLNTTQPLCKAFMVTDEDIRKQEEL QPLCKAFMVTDEDIRKQEELVQQVRKRLEE K A F I R K 1 1 0 2 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 1 0 0 10 0 1195.5543 O95983;B3KMA8;K7EIE8 O95983 217 226 MBD3 Methyl-CpG-binding domain protein 3 yes no 2 0.0010893 69.954 2 0.64828 0.659 6.6358 2 Median 0.64828 0.659 6.6358 2 0 Median NaN NaN NaN 0 0 Median 25454000 15891000 9562900 25454000 15891000 9562900 0 0 0 403 1432 413 996;997 1558;1559;1560 1560 1122 3 AFNSSSFNSNTFLTR VRMAVQDAVDALMQKAFNSSSFNSNTFLTR AFNSSSFNSNTFLTRLLVHMGLLKSEDKVK K A F T R L 1 1 3 0 0 0 0 0 0 0 1 0 0 3 0 4 2 0 0 0 0 0 15 0 1691.7903 B4DY16;A0A024R1U0;P46060;B4E0U0;Q9BSK3 B4DY16 446 460 RANGAP1 Ran GTPase-activating protein 1 yes no 2 2.6864E-23 140.14 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8838700 0 8838700 8838700 0 8838700 0 0 0 404 90 414 998;999 1561;1562 1562 2 AFNSVDPTFDNSVPSK ITKAYEMLSDPVKRRAFNSVDPTFDNSVPS FNSVDPTFDNSVPSKSEAKDNFFEVFTPVF R A F S K S 1 0 2 2 0 0 0 0 0 0 0 1 0 2 2 3 1 0 0 2 0 0 16 0 1723.8053 Q99543;Q6P5S9;H7C3L7;C9IZ83 Q99543 156 171 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 2 0.001084 55.04 2 1.624 1.644 NaN 1 Median 1.624 1.644 NaN 1 0 Median NaN NaN NaN 0 0 Median 20253000 7062500 13191000 20253000 7062500 13191000 0 0 0 405 1993 415 1000;1001 1563;1564;1565;1566;1567 1566 5 AFPEHFTYEPNEADAAQGYR LGRYYMSARHMALSKAFPEHFTYEPNEADA FTYEPNEADAAQGYRYPRPASVPPSPSLSR K A F Y R Y 4 1 1 1 0 1 3 1 1 0 0 0 0 2 2 0 1 0 2 0 0 0 20 0 2312.0134 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 616 635 GYS1 Glycogen [starch] synthase, muscle yes no 3 8.697E-07 64.2 2 2 0.44402 0.41067 7.5337 4 Median 0.39807 0.42304 12.536 2 0 Median 0.48516 0.41067 2.0802 2 0 Median 109500000 73933000 35571000 65976000 45418000 20559000 43527000 28515000 15012000 406 1479 416 1002;1003;1004;1005 1568;1569;1570;1571;1572;1573;1574;1575 1573 8 AFQAAFR VQEVLSIKHLPPQLRAFQAAFRAQGPLAML KHLPPQLRAFQAAFRAQGPLAMLQHFDTIY R A F F R A 3 1 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 809.41842 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00;A0PJ76;F5GZK7;F5H431 B3KMS0 43 49 NCAPD2 Condensin complex subunit 1 yes no 2 0.0038206 133.99 2 1 0.90913 1.0352 12.126 3 Median 0.90256 1.03 0.71308 2 0 Median 1.562 1.2705 NaN 1 0 Median 270320000 143230000 127100000 257940000 138370000 119560000 12388000 4853200 7535300 407 908 417 1006;1007;1008 1576;1577;1578;1579;1580;1581 1577 6 AFQEGIAK AEEERIRKHKAAAEKAFQEGIAKAKLVMRR HKAAAEKAFQEGIAKAKLVMRRTPIGTDRN K A F A K A 2 0 0 0 0 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 0 862.45487 Q9UIG0 Q9UIG0 886 893 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0018287 105.39 1 2 25.495 20.47 NaN 1 Median NaN NaN NaN 0 0 Median 25.495 20.47 NaN 1 0 Median 139650000 1036900 138610000 84408000 0 84408000 55238000 1036900 54201000 408 2103 418 1009;1010;1011 1582;1583;1584 1584 3 AFREEAIK TNETPYFMKSIDCIRAFREEAIKFSEEQRF KSIDCIRAFREEAIKFSEEQRFNNFLKALQ R A F I K F 2 1 0 0 0 0 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 1 962.51853 P13010;Q53T09 P13010 641 648 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 0.0050995 125.31 4 0.33851 0.40337 8.6253 4 Median 0.33851 0.40337 8.6253 4 0 Median NaN NaN NaN 0 0 Median 658990000 477560000 181430000 658990000 477560000 181430000 0 0 0 409 1476 419 1012;1013;1014;1015 1585;1586;1587;1588;1589;1590 1588 6 AFSAVDTDGNGTINAQELGAALK MAGELTPEEEAQYKKAFSAVDTDGNGTINA GNGTINAQELGAALKATGKNLSEAQLRKLI K A F L K A 5 0 2 2 0 1 1 3 0 1 2 1 0 1 0 1 2 0 0 1 0 0 23 0 2262.1128 Q9NZT1 Q9NZT1 16 38 CALML5 Calmodulin-like protein 5 yes yes 2 9.8551E-05 66.285 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3833900 3833900 0 3833900 3833900 0 0 0 0 410 2089 420 1016 1591 1591 1 AFSEIQGLTDQADK LLHSSKVSKSLILTRAFSEIQGLTDQADKL RAFSEIQGLTDQADKLIGQKNLLTRKRNIL R A F D K L 2 0 0 2 0 2 1 1 0 1 1 1 0 1 0 1 1 0 0 0 0 0 14 0 1521.7311 B9EGR5;Q8IWI9;B4DVS1;H3BU53 B9EGR5 2258 2271 MGA MAX gene-associated protein no no 2 1.2954E-10 112.13 3 1 1.0581 0.98309 52.998 2 Median 0.65051 0.67583 NaN 1 0 Median 1.7212 1.43 NaN 1 0 Median 19756000 13788000 5967600 17480000 12839000 4640700 2276300 949430 1326900 411 1121;1042 421 1017;1018;1019;1020 1592;1593;1594;1595;1596 1595 5 AFSQFVR HVFSEEDYRTLTNYKAFSQFVRPLIAAKNP YRTLTNYKAFSQFVRPLIAAKNPKIAVSKM K A F V R P 1 1 0 0 0 1 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 7 0 853.44464 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;F5H6N4;Q05CG6 F5GWX5 173 179 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.012554 105.27 1 0.58345 0.6374 NaN 1 Median 0.58345 0.6374 NaN 1 0 Median NaN NaN NaN 0 0 Median 37521000 23245000 14276000 37521000 23245000 14276000 0 0 0 412 515 422 1021 1597;1598 1598 2 AFSQFVRPLIAAK HVFSEEDYRTLTNYKAFSQFVRPLIAAKNP YKAFSQFVRPLIAAKNPKIAVSKMMMVLGA K A F A K N 3 1 0 0 0 1 0 0 0 1 1 1 0 2 1 1 0 0 0 1 0 0 13 1 1446.8347 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;F5H6N4;Q05CG6 F5GWX5 173 185 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 5.2458E-05 74.698 1 0.6907 0.81496 NaN 1 Median 0.6907 0.81496 NaN 1 0 Median NaN NaN NaN 0 0 Median 36153000 21665000 14488000 36153000 21665000 14488000 0 0 0 413 515 423 1022 1599;1600 1599 2 AFSSNPVVR DIRQRLGKRPHSPEKAFSSNPVVRREPSSD PHSPEKAFSSNPVVRREPSSDVHSRLGVPR K A F V R R 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 2 0 0 9 0 975.51378 Q53F19 Q53F19 504 512 C17orf85 Uncharacterized protein C17orf85 yes yes 2 0.034102 44.395 1 0.93541 0.94417 NaN 1 Median 0.93541 0.94417 NaN 1 0 Median NaN NaN NaN 0 0 Median 10278000 5600200 4677800 10278000 5600200 4677800 0 0 0 414 1783 424 1023 1601 1601 1 AFSYYGPLR VGNLGTGAGKGELERAFSYYGPLRTVWIAR KGELERAFSYYGPLRTVWIARNPPGFAFVE R A F L R T 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 2 0 0 0 9 0 1072.5342 Q16629;A0A0B4J1Z1;B4DEK2;C9JAB2;Q8NB80 Q16629 30 38 SRSF7 Serine/arginine-rich splicing factor 7 no no 2 0.00079465 94.262 2 2 1.0661 1.0512 32.168 4 Median 1.1717 1.3721 0.99298 2 0 Median 0.95007 0.7873 4.198 2 0 Median 625010000 289360000 335650000 590900000 271940000 318950000 34111000 17413000 16698000 415 1772;1918 425 1024;1025;1026;1027 1602;1603;1604;1605;1606;1607;1608;1609;1610 1606 9 AFTGFIVEADTPGIQIGR LLARSDPDPKAPANKAFTGFIVEADTPGIQ GFIVEADTPGIQIGRKELNMGQRCSDTRGI K A F G R K 2 1 0 1 0 1 1 3 0 3 0 0 0 2 1 0 2 0 0 1 0 0 18 0 1890.984 B7Z9I1;B4DWX6;A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B4DVB1;A0A0S2Z3A5;B4DJE7;B4DVE0 B7Z9I1 182 199 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 3.8338E-23 156.36 2 1 1.6316 1.5636 81.935 2 Median 2.5523 2.7908 NaN 1 0 Median 1.043 0.87599 NaN 1 0 Median 56665000 12413000 44251000 52377000 10235000 42142000 4287800 2178700 2109100 416 545 426 1028;1029;1030 1611;1612;1613;1614;1615 1611 5 AFTKPEEACSFILSADFPALVVK KEFMDRHGIPTAQWKAFTKPEEACSFILSA CSFILSADFPALVVKASGLAAGKGVIVAKS K A F V K A 4 0 0 1 1 0 2 0 0 1 2 2 0 3 2 2 1 0 0 2 0 0 23 1 2539.3032 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;H7C366 Q3B7A7 126 148 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 0.0012778 29.576 2 0.93956 1.0872 29.981 2 Median 0.93956 1.0872 29.981 2 0 Median NaN NaN NaN 0 0 Median 31711000 16411000 15300000 31711000 16411000 15300000 0 0 0 417 1507 427 1031;1032 1616;1617;1618 1616 3 AFTQLSNLQSHR TGDRPYKCAHPGCEKAFTQLSNLQSHRRQH CEKAFTQLSNLQSHRRQHNKDKPFKCHNCH K A F H R R 1 1 1 0 0 2 0 0 1 0 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1400.7161 D3DUR9;Q8TF68;B4DQU6 D3DUR9 383 394 ZNF384 Zinc finger protein 384 yes no 2;3 4.9568E-23 159.83 2 3 1.7147 1.4628 33.367 4 Median 0.79436 0.82796 NaN 1 0 Median 1.913 1.6434 14.813 3 0 Median 67238000 19840000 47397000 44003000 12097000 31906000 23234000 7743200 15491000 418 1195 428 1033;1034;1035;1036;1037 1619;1620;1621;1622;1623 1619 5 AFVAGVLPFK INLTERGCVTKIYGRAFVAGVLPFKVAKDM KIYGRAFVAGVLPFKVAKDMAAAAVRCIRK R A F F K V 2 0 0 0 0 0 0 1 0 0 1 1 0 2 1 0 0 0 0 2 0 0 10 0 1047.6117 A8K8K1;O00442 A8K8K1 196 205 RTCA RNA 3-terminal phosphate cyclase yes no 2 0.0036667 63.48 1 2.6781 2.7575 NaN 1 Median 2.6781 2.7575 NaN 1 0 Median NaN NaN NaN 0 0 Median 10799000 3792900 7006200 10799000 3792900 7006200 0 0 0 419 778 429 1038 1624 1624 1 AFVAIGDYNGHVGLGVK PVQKQTRAGQRTRFKAFVAIGDYNGHVGLG VAIGDYNGHVGLGVKCSKEVATAIRGAIIL K A F V K C 2 0 1 1 0 0 0 4 1 1 1 1 0 1 0 0 0 0 1 3 0 0 17 0 1715.8995 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PMM9;I3L404;E9PPT0;Q8NI61;E9PM36 P15880 126 142 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2;3 6.151E-35 129.93 5 4 0.93753 0.88562 25.595 8 Median 0.99119 1.1488 3.8396 4 0 Median 0.85872 0.71512 4.6158 4 0 Median 714820000 349150000 365670000 559520000 267310000 292200000 155300000 81838000 73467000 420 1485 430 1039;1040;1041;1042;1043;1044;1045;1046;1047 1625;1626;1627;1628;1629;1630;1631;1632;1633;1634;1635;1636;1637;1638;1639;1640;1641 1625 17 AFVDFLSDEIK ACGCGCGSLHTDGDKAFVDFLSDEIKEERK DGDKAFVDFLSDEIKEERKIQKHKTLPKMS K A F I K E 1 0 0 2 0 0 1 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0 11 0 1282.6445 A8K651;Q07021 A8K651 81 91 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 2 1.8777E-05 105.4 2 2 1.2406 1.1805 62.017 4 Median 1.8547 2.0274 3.7727 2 0 Median 0.85732 0.6932 2.5806 2 0 Median 105770000 38920000 66846000 89494000 29730000 59764000 16273000 9190200 7082400 421 756 431 1048;1049;1050;1051 1642;1643;1644;1645;1646;1647 1642 6 AFVEDSEDEDGAGEGGSSLLQK QSYVEEQKQLKESFRAFVEDSEDEDGAGEG DEDGAGEGGSSLLQKRAKTRQEKAQEEADY R A F Q K R 2 0 0 3 0 1 4 4 0 0 2 1 0 1 0 3 0 0 0 1 0 0 22 0 2238.9764 Q8N9T8;A0A024R7C4;B4DUY9;H0YFD2;B7ZLF4;F8WFC1 Q8N9T8 166 187 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 4.2584E-18 93.494 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7571000 0 7571000 7571000 0 7571000 0 0 0 422 1916 432 1052;1053 1648;1649;1650 1648 3 AFVHWYVGEGMEEGEFSEAR WARLDHKFDLMYAKRAFVHWYVGEGMEEGE YVGEGMEEGEFSEAREDMAALEKDYEEVGV R A F A R E 2 1 0 0 0 0 5 3 1 0 0 0 1 2 0 1 0 1 1 2 0 0 20 0 2329.011 B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;B4DN58;Q15670;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3 B3KT06 368 387 TUBA1B;TUBA1C;TUBA4A;TUBA1A;TUBA2;TUBA3C Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain no no 3 1.5222E-09 92.307 2 1.5719 1.7489 3.3291 2 Median 1.5719 1.7489 3.3291 2 0 Median NaN NaN NaN 0 0 Median 122320000 47215000 75106000 122320000 47215000 75106000 0 0 0 423 922;1257;1659;1869 433 1054;1055 1651;1652;1653;1654 1653 754 4 AFVSMVYSEEGAEDR DLIHGAPVGKPAANRAFVSMVYSEEGAEDR AFVSMVYSEEGAEDRTFARVIVGGSSEYKI R A F D R T 2 1 0 1 0 0 3 1 0 0 0 0 1 1 0 2 0 0 1 2 0 0 15 0 1688.7352 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709;Q68EN4;H0Y7K8;Q5H934;Q7Z4C6 Q14683 78 92 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 1.9589E-07 98.156 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4157800 0 4157800 4157800 0 4157800 0 0 0 424 1739 434 1056 1655 1655 1568 1 AFVYINEYR RITVENEVDLDGPPRAFVYINEYRVGEGIT LDGPPRAFVYINEYRVGEGITLNQVAVGCE R A F Y R V 1 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 2 1 0 0 9 0 1173.5819 O43463;B4DMP6;Q14828 O43463 159 167 SUV39H1;MG44 Histone-lysine N-methyltransferase SUV39H1 yes no 2 0.0074258 61.999 2 2 1.5942 1.3049 7.4789 3 Median 1.0243 1.179 NaN 1 0 Median 1.6125 1.3342 3.1433 2 0 Median 115330000 65762000 49567000 96008000 58401000 37607000 19321000 7360700 11961000 425 1385 435 1057;1058;1059;1060 1656;1657;1658;1659;1660;1661 1657 6 AFYPEEISSMVLTK GDKPKVQVSYKGETKAFYPEEISSMVLTKM KAFYPEEISSMVLTKMKEIAEAYLGYPVTN K A F T K M 1 0 0 0 0 0 2 0 0 1 1 1 1 1 1 2 1 0 1 1 0 0 14 0 1613.8011 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DNT8;B4DI39;B4DWK5;Q9UQC1 A8K5I0 113 126 HEL-S-103;HSPA1B;HSPA1A;HSP70-1 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2 1.2277E-06 105.2 5 4 0.87088 0.9437 24.259 6 Median 0.87088 0.9437 3.2217 2 0 Median 0.97281 0.79319 29.082 4 0 Median 126090000 54053000 72037000 100400000 40791000 59606000 25694000 13263000 12431000 426 533 436;437 1061;1062;1063;1064;1065;1066;1067;1068;1069 1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675 1668 392 14 AGAAAASAAAYAAYGYNVSK RKSTAGSAAAMAGAKAGAAAASAAAYAAYG ASAAAYAAYGYNVSKGISASSPLQTSLVRP K A G S K G 10 0 1 0 0 0 0 2 0 0 0 1 0 0 0 2 0 0 3 1 0 0 20 0 1846.885 A0A024R9R7;Q9ULG1;Q9NUK2 A0A024R9R7 1465 1484 INOC1;INO80 DNA helicase INO80 yes no 2 0.0048876 29.013 2 1.8974 1.5075 8.9134 2 Median NaN NaN NaN 0 0 Median 1.8974 1.5075 8.9134 2 0 Median 6498700 2381400 4117300 0 0 0 6498700 2381400 4117300 427 288 438 1070;1071 1676;1677;1678 1677 3 AGAAGGASVGGSGLPR DQLWRPYYSYKPKRKAGAAGGASVGGSGLP GAAGGASVGGSGLPRGRRPPRWRQKLERRS K A G P R G 4 1 0 0 0 0 0 6 0 0 1 0 0 0 1 2 0 0 0 1 0 0 16 0 1283.6582 B3KVD4;Q9P1Z0 B3KVD4 484 499 ZBTB4 Zinc finger and BTB domain-containing protein 4 yes no 2 5.4334E-09 109.6 2 2 1.1427 0.98784 8.7363 3 Median 0.8818 0.88694 NaN 1 0 Median 1.1718 1.0206 4.6141 2 0 Median 16430000 9334500 7095100 13074000 7954500 5119700 3355300 1379900 1975400 428 949 439 1072;1073;1074;1075 1679;1680;1681;1682;1683;1684;1685 1680 7 AGAANSQLSTSQPSLR AWGLEQRPHVAGKPRAGAANSQLSTSQPSL GAANSQLSTSQPSLRHKVNEHEQDGNELQT R A G L R H 3 1 1 0 0 2 0 1 0 0 2 0 0 0 1 4 1 0 0 0 0 0 16 0 1586.8012 G5EA44;B4DWJ9;F5H7W8;Q96C57 G5EA44 48 63 C12orf43 Uncharacterized protein C12orf43 yes no 2 5.6183E-05 103.88 2 1 0.97945 0.93697 19.765 2 Median 1.0596 1.0775 NaN 1 0 Median 0.90535 0.81476 NaN 1 0 Median 9333700 4381400 4952300 7315400 3237000 4078400 2018400 1144400 873930 429 1045 440 1076;1077;1078 1686;1687;1688;1689 1686 4 AGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGK RPGLLKDPGVGGKARAGAGAPVVGSGSSGG TGLGPVSTLPSLHGKQGVTSVTCHGGYVYT R A G G K Q 4 0 1 0 0 0 0 10 1 0 3 1 0 1 3 5 2 0 0 3 0 0 34 0 2963.5101 A0A087X295;Q9NNW5;E9PDU5;B4E256;Q8NDH0 A0A087X295 566 599 WDR6;DKFZp434F1720 WD repeat-containing protein 6 yes no 3 1.0027E-12 51.9 2 1 0.56159 0.57067 17.43 3 Median 0.50049 0.51778 13.756 2 0 Median 0.81739 0.66519 NaN 1 0 Median 45081000 25984000 19098000 37899000 22275000 15624000 7182000 3708200 3473800 430 451 441 1079;1080;1081 1690;1691;1692;1693;1694 1692 5 AGAGSATLSMAYAGAR TGRIQEAGTEVVKAKAGAGSATLSMAYAGA GAGSATLSMAYAGARFVFSLVDAMNGKEGV K A G A R F 6 1 0 0 0 0 0 3 0 0 1 0 1 0 0 2 1 0 1 0 0 0 16 0 1453.6984 Q0QF37;Q75MT9;Q6FHZ0;A0A024R4K3;P40926;G3XAL0;B3KTM1 Q0QF37 221 236 MDH2 Malate dehydrogenase;Malate dehydrogenase, mitochondrial yes no 2 0.0099847 42.976 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 431 156 442 1082 1695 1695 132 1 AGAIAPCEVTVPAQNTGLGPEK IRDMLLANKVPAAARAGAIAPCEVTVPAQN EVTVPAQNTGLGPEKTSFFQALGITTKISR R A G E K T 4 0 1 0 1 1 2 3 0 1 1 1 0 0 3 0 2 0 0 2 0 0 22 0 2179.0943 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;F8VW21;G3V210;B4E3D5;Q8NHW5;F8VQY6;F8VPE8;F8VRK7 Q53HW2 113 134 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 8.6623E-22 116.58 2 2 0.93955 0.93309 19.457 4 Median 0.9535 1.1101 3.4807 2 0 Median 0.93613 0.79425 1.7021 2 0 Median 641090000 328910000 312170000 515300000 263890000 251420000 125780000 65029000 60752000 432 345 443 1083;1084;1085;1086 1696;1697;1698;1699;1700;1701;1702 1701 7 AGAISASGPELQGAGHSK GSGAASPTGSAVDIRAGAISASGPELQGAG ISASGPELQGAGHSKLQVTMPGIKVGGSGV R A G S K L 4 0 0 0 0 1 1 4 1 1 1 1 0 0 1 3 0 0 0 0 0 0 18 0 1636.8169 Q09666;B4DTV0 Q09666 226 243 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 1.0017E-07 89.663 2 1.8637 1.9294 NaN 1 Median 1.8637 1.9294 NaN 1 0 Median NaN NaN NaN 0 0 Median 11339000 4069700 7269100 11339000 4069700 7269100 0 0 0 433 1696 444 1087;1088 1703;1704 1704 2 AGAKPDQIGIITPYEGQR TEAANVEKITTKLLKAGAKPDQIGIITPYE KPDQIGIITPYEGQRSYLVQYMQFSGSLHT K A G Q R S 2 1 0 1 0 2 1 3 0 3 0 1 0 0 2 0 1 0 1 0 0 0 18 1 1913.0007 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 783 800 UPF1 Regulator of nonsense transcripts 1 yes no 3 5.1334E-09 80.585 2 1 1.2458 1.0738 NaN 1 Median NaN NaN NaN 0 0 Median 1.2458 1.0738 NaN 1 0 Median 30632000 809720 29822000 28663000 0 28663000 1968500 809720 1158800 434 231 445 1089;1090;1091 1705;1706;1707;1708 1706 4 AGALHAQVER HLCRARRYCHDLGERAGALHAQVERLVQQA DLGERAGALHAQVERLVQQAGRQPDSPTAL R A G E R L 3 1 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1050.557 Q9BQG0;I3L1L3 Q9BQG0 897 906 MYBBP1A Myb-binding protein 1A yes no 2;3 1.8982E-09 152.11 4 2 0.92114 0.88398 16.19 6 Median 0.87584 0.98531 17.271 4 0 Median 0.95952 0.79399 0.61825 2 0 Median 271040000 142730000 128310000 251770000 133020000 118740000 19276000 9706000 9570000 435 1997 446 1092;1093;1094;1095;1096;1097 1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720 1711 12 AGALMMPLVDQLENR KIFLFDTQHFISKERAGALMMPLVDQLENR AGALMMPLVDQLENRLGGEEKFQERVTKHL R A G N R L 2 1 1 1 0 1 1 1 0 0 3 0 2 0 1 0 0 0 0 1 0 0 15 0 1656.8327 B2RWN5;B4E263;Q96ES5 B2RWN5 2016 2030 HEATR1 yes no 2 3.3513E-06 95.094 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20142000 4688200 15454000 20142000 4688200 15454000 0 0 0 436 897 447 1098;1099;1100;1101;1102 1721;1722;1723;1724;1725 1725 706;707 5 AGAPPPSGSAVSTAPQQK AYVRRMAAEATEWQKAGAPPPSGSAVSTAP PPPSGSAVSTAPQQKPIGKISKNKKKKLKK K A G Q K P 4 0 0 0 0 2 0 2 0 0 0 1 0 0 4 3 1 0 0 1 0 0 18 0 1649.8373 A0A024R704;P78362 A0A024R704 242 259 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal yes no 2 3.5032E-05 63.091 2 1.4107 1.4383 5.8273 2 Median 1.4107 1.4383 5.8273 2 0 Median NaN NaN NaN 0 0 Median 21848000 8720200 13128000 21848000 8720200 13128000 0 0 0 437 212 448 1103;1104 1726;1727;1728 1728 3 AGASPPPVSELDR SGGARGSFAPGHGPRAGASPPPVSELDRAD PRAGASPPPVSELDRADAWLLRKAHETAFL R A G D R A 2 1 0 1 0 0 1 1 0 0 1 0 0 0 3 2 0 0 0 1 0 0 13 0 1294.6517 Q9NX00 Q9NX00 45 57 TMEM160 Transmembrane protein 160 yes yes 2 0.00027369 66.92 1 1.0083 0.99754 NaN 1 Median 1.0083 0.99754 NaN 1 0 Median NaN NaN NaN 0 0 Median 12417000 6912900 5503600 12417000 6912900 5503600 0 0 0 438 2076 449 1105 1729;1730 1730 2 AGAYDFPSPEWDTVTPEAK PFWDEDQHKLYQQIKAGAYDFPSPEWDTVT DFPSPEWDTVTPEAKNLINQMLTINPAKRI K A G A K N 3 0 0 2 0 0 2 1 0 0 0 1 0 1 3 1 2 1 1 1 0 0 19 0 2079.9426 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;H0Y6G2;Q8WU40;B3KY86;B3KTH7;H0Y9C2;B7Z1Z6;Q4G1A8;H7BXS4;Q8IWE0;Q7LDD5;A8K161;D3DVK8;Q53H78;A4D2J9;Q9UQM7;Q13554;D6R938;A0A024RDK3;E9PBG7;E9PF82;B7Z2B0;Q13557 Q5SWX3 228 246 CAMK2G;CAMK2D;CAMK2B;CAMK2A Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit alpha;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit delta no no 2 0.00049704 40.066 1 1.2533 1.2813 NaN 1 Median 1.2533 1.2813 NaN 1 0 Median NaN NaN NaN 0 0 Median 9339800 3710500 5629200 9339800 3710500 5629200 0 0 0 439 475;388 450 1106 1731;1732 1732 2 AGDEIDEPSER KYHVMANHNSLPILKAGDEIDEPSERERLR PILKAGDEIDEPSERERLRTVLKRLGKLRC K A G E R E 1 1 0 2 0 0 3 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1216.5208 G3XAG1;Q96ME7;B4DES6;B7Z9P6;B4E0X7 G3XAG1 227 237 ZNF512 Zinc finger protein 512 yes no 2 4.2083E-08 118.71 2 2 0.6104 0.59047 31.322 4 Median 0.4381 0.46671 10.826 2 0 Median 0.90424 0.77486 15.995 2 0 Median 86545000 58516000 28029000 77866000 54048000 23818000 8679900 4468100 4211800 440 1275 451 1107;1108;1109;1110 1733;1734;1735;1736;1737 1733 5 AGDMENAENILTVMR VTEAVFSALVTGHARAGDMENAENILTVMR AGDMENAENILTVMRDAGIEPGPDTYLALL R A G M R D 2 1 2 1 0 0 2 1 0 1 1 0 2 0 0 0 1 0 0 1 0 0 15 0 1662.7705 E5KNY5;P42704;B4DSR0;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 245 259 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0005283 62.088 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6587900 0 6587900 6587900 0 6587900 0 0 0 441 1207 452 1111 1738 1738 917;918 1 AGEAAELQDAEVESSAK PGPSPAGPTRDEPAKAGEAAELQDAEVESS EAAELQDAEVESSAKSGKP___________ K A G A K S 5 0 0 1 0 1 4 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 17 0 1703.785 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2 Q6PK21 493 509 OGFR Opioid growth factor receptor yes no 2 2.1191E-13 115.12 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10934000 5619500 5314800 10934000 5619500 5314800 0 0 0 442 469 453 1112;1113;1114 1739;1740;1741;1742 1741 4 AGEARPGPTAESASGPSEDPSVNFLK WEMGPPGNWSPRPPRAGEARPGPTAESASG SASGPSEDPSVNFLKNVGESVAAALSPLGI R A G L K N 4 1 1 1 0 0 3 3 0 0 1 1 0 1 4 4 1 0 0 1 0 0 26 1 2570.2249 Q13501;B4E3V2;E7EMC7;E9PFW8;E3WH17 Q13501 213 238 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 3 3.4394E-06 52.773 2 2.3338 2.6452 NaN 1 Median 2.3338 2.6452 NaN 1 0 Median NaN NaN NaN 0 0 Median 30050000 5650000 24400000 30050000 5650000 24400000 0 0 0 443 1714 454 1115;1116 1743;1744 1743 2 AGEGTYALDSESCMEK HYPPKLEGQAQAEAKAGEGTYALDSESCME GEGTYALDSESCMEKLAALSASLARVVVPA K A G E K L 2 0 0 1 1 0 3 2 0 0 1 1 1 0 0 2 1 0 1 0 0 0 16 0 1746.7077 B5MCF9;B2RDF2;O00541;B3KXD6 B5MCF9 243 258 PES1 Pescadillo homolog yes no 2 3.4782E-18 134.56 2 1 1.239 1.2373 10.599 3 Plateau 1.2295 1.2288 0.96923 2 0 Median 1.2487 1.0231 NaN 1 0 Median 51648000 24992000 26656000 49178000 23887000 25290000 2470600 1104800 1365800 444 886 455;456 1117;1118;1119 1745;1746;1747;1748;1749 1748 698 5 AGEMELKPFNGEDYTCITFQPDLSK YKKMFKQTWMDNMGRAGEMELKPFNGEDYT GEDYTCITFQPDLSKFKMQSLDKDIVALMV R A G S K F 1 0 1 2 1 1 3 2 0 1 2 2 1 2 2 1 2 0 1 0 0 0 25 1 2889.3201 P11388 P11388 201 225 TOP2A DNA topoisomerase 2-alpha yes yes 3 9.4543E-17 96.019 2 4 0.94572 0.96465 21.487 6 Median 0.82412 0.96465 3.0243 2 0 Median 1.1403 0.97098 27.511 4 0 Median 323330000 157300000 166030000 154070000 80383000 73685000 169260000 76920000 92343000 445 1471 457;458 1120;1121;1122;1123;1124;1125 1750;1751;1752;1753;1754;1755;1756;1757;1758;1759;1760 1755 1191 11 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR ASTGQPDNDVTEGQRAGEPNSPDAEEANSP DVTAGCDPAGVHPPR_______________ R A G P R - 5 1 2 3 1 0 3 3 1 0 0 0 0 0 6 2 1 0 0 2 0 0 30 0 3013.3108 Q08J23 Q08J23 738 767 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 2.313E-11 57.845 2 1.5923 1.6946 2.4009 2 Median 1.5923 1.6946 2.4009 2 0 Median NaN NaN NaN 0 0 Median 56733000 22077000 34656000 56733000 22077000 34656000 0 0 0 446 1694 459 1126;1127 1761;1762;1763;1764;1765;1766 1763 6 AGEQLAPFLPQLVPR SRKGAAFGFNVIATRAGEQLAPFLPQLVPR AGEQLAPFLPQLVPRLYRYQFDPNLGIRQA R A G P R L 2 1 0 0 0 2 1 1 0 0 3 0 0 1 3 0 0 0 0 1 0 0 15 0 1634.9144 B3KXF2;J3KN16;Q5VYK3 B3KXF2 581 595 KIAA0368;ECM29 Proteasome-associated protein ECM29 homolog yes no 2 0.0044679 46.706 2 2.4709 2.5177 0.56111 2 Median 2.4709 2.5177 0.56111 2 0 Median NaN NaN NaN 0 0 Median 12422000 4229300 8192400 12422000 4229300 8192400 0 0 0 447 952 460 1128;1129 1767;1768;1769 1767 3 AGEVFIHK ITEEEMRKLFEKYGKAGEVFIHKDKGFGFI LFEKYGKAGEVFIHKDKGFGFIRLETRTLA K A G H K D 1 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 1 0 0 8 0 899.4865 A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9IZL7;C9JYS8;A0A0S2Z4E7 A8K525 100 107 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.0027401 98.997 2 2 1.2327 1.2119 35.459 4 Median 1.3996 1.6323 2.8326 2 0 Median 1.1008 0.88565 5.0837 2 0 Median 537700000 228380000 309320000 517280000 218600000 298680000 20424000 9780500 10644000 448 573 461 1130;1131;1132;1133 1770;1771;1772;1773;1774;1775;1776 1772 7 AGFAGDDAPR DIAALVVDNGSGMCKAGFAGDDAPRAVFPS SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV K A G P R A 3 1 0 2 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 10 0 975.44101 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q7Z7J6;A6NL76;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;C9JUM1;F8WCH0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;G5E9R0;E7EVS6;C9JTX5;C9JZR7;Q6S8J3;A5A3E0;P0CG38;L0R5C4;P0CG39;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282 P63261 19 28 ACTA2;ACTG2;ACTA1;ACTC1;ACTB;PS1TP5BP1;POTEE;POTEF;POTEI;POTEM;POTEJ;ACTG1 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 1.2779E-30 184.38 2 2 2.1763 2.1684 2.8373 4 Median 1.8411 2.2023 4.6339 2 0 Median 2.4866 2.1684 0.51946 2 0 Median 8502600000 2916300000 5586300000 7827200000 2722800000 5104400000 675440000 193580000 481860000 449 1624;1656;1100 462 1134;1135;1136;1137 1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787 1781 11 AGFDSDYDQALADIR FDHEKARKTGLITPKAGFDSDYDQALADIR AGFDSDYDQALADIRENEQSLLEYLEKQRN K A G I R E 3 1 0 4 0 1 0 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 15 0 1655.7427 P52701;A0A087WWJ1;Q1L838 P52701 931 945 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 2.621E-10 118.48 2 1.011 1.0355 5.332 2 Median 1.011 1.0355 5.332 2 0 Median NaN NaN NaN 0 0 Median 22547000 9356600 13190000 22547000 9356600 13190000 0 0 0 450 1601 463 1138;1139 1788;1789 1789 2 AGFFLPPDEYVVTDPEQEK GIPILSLDWLHQSRKAGFFLPPDEYVVTDP LPPDEYVVTDPEQEKNFGFSLQDALSRARE K A G E K N 1 0 0 2 0 1 3 1 0 0 1 1 0 2 3 0 1 0 1 2 0 0 19 0 2180.0314 Q14676;B4DYH4 Q14676 1959 1977 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0393 22.055 1 0.7547 0.7415 NaN 1 Median 0.7547 0.7415 NaN 1 0 Median NaN NaN NaN 0 0 Median 8728700 4852000 3876700 8728700 4852000 3876700 0 0 0 451 1738 464 1140 1790 1790 1 AGFIQDTSLILYEEVKPNLTER ISCKIRDLLPVMCDRAGFIQDTSLILYEEV SLILYEEVKPNLTERIQDYDVSLDKALDEL R A G E R I 1 1 1 1 0 1 3 1 0 2 3 1 0 1 1 1 2 0 1 1 0 0 22 1 2535.3221 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5 Q93009 724 745 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 4.2533E-12 97.488 2 0.97208 0.83059 8.561 2 Median NaN NaN NaN 0 0 Median 0.97208 0.83059 8.561 2 0 Median 23457000 11732000 11726000 0 0 0 23457000 11732000 11726000 452 1954 465 1141;1142 1791;1792;1793;1794 1791 4 AGFVPVYLR VSYGLTPRLLKFWKRAGFVPVYLRQTPNDL LKFWKRAGFVPVYLRQTPNDLTGEHSCIML R A G L R Q 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 2 0 0 9 0 1020.5757 Q9H0A0;A0A087WV29 Q9H0A0 726 734 NAT10 N-acetyltransferase 10 yes no 2 0.0042156 81.297 2 1.4347 1.2394 1.6097 2 Median NaN NaN NaN 0 0 Median 1.4347 1.2394 1.6097 2 0 Median 72970000 29687000 43283000 0 0 0 72970000 29687000 43283000 453 2023 466 1143;1144 1795;1796;1797;1798;1799 1797 5 AGGAAVVITEPEHTK ______________________________ AGGAAVVITEPEHTKERVKLEGSKCKGQLL K A G T K E 3 0 0 0 0 0 2 2 1 1 0 1 0 0 1 0 2 0 0 2 0 0 15 0 1478.7729 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 13 27 RCC2 Protein RCC2 yes no 2 5.2506E-07 101.95 2 1.0909 1.1002 NaN 1 Median 1.0909 1.1002 NaN 1 0 Median NaN NaN NaN 0 0 Median 16232000 7685400 8547000 16232000 7685400 8547000 0 0 0 454 301 467 1145;1146 1800;1801 1801 2 AGGADAVQTVTGGLR ______________________________ AGGADAVQTVTGGLRSLYLRKVLPLEEAYR R A G L R S 3 1 0 1 0 1 0 4 0 0 1 0 0 0 0 0 2 0 0 2 0 0 15 0 1371.7106 A8K9B9;A0A024R9N6;Q9H223 A8K9B9 15 29 EHD4 EH domain-containing protein 4 yes no 2 5.9351E-07 100.55 2 1.0726 1.0781 21.413 2 Median 1.0726 1.0781 21.413 2 0 Median NaN NaN NaN 0 0 Median 29829000 14353000 15476000 29829000 14353000 15476000 0 0 0 455 284 468 1147;1148 1802;1803 1803 2 AGGASPAASSTAQPPTQHR GHSPKDPGGGGGPVRAGGASPAASSTAQPP SPAASSTAQPPTQHRLVARNGEAEVSPTAG R A G H R L 5 1 0 0 0 2 0 2 1 0 0 0 0 0 3 3 2 0 0 0 0 0 19 0 1790.866 B2RCD8;Q8IU81 B2RCD8 449 467 IRF2BP1 Interferon regulatory factor 2-binding protein 1 yes no 3 0.013573 21.667 2 1.4908 1.5805 5.9378 2 Median 1.4908 1.5805 5.9378 2 0 Median NaN NaN NaN 0 0 Median 7578700 3254500 4324200 7578700 3254500 4324200 0 0 0 456 882 469 1149;1150 1804;1805 1804 2 AGGDAEPRPAEPPAWAGGAR SAAVLFSAVAVGKPRAGGDAEPRPAEPPAW EPRPAEPPAWAGGARPGPGVWDPNWDRREP R A G A R P 6 2 0 1 0 0 2 4 0 0 0 0 0 0 4 0 0 1 0 0 0 0 20 1 1931.9238 Q96HS1 Q96HS1 33 52 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 3 9.3969E-05 28.891 1 3.3561 2.9943 NaN 1 Median NaN NaN NaN 0 0 Median 3.3561 2.9943 NaN 1 0 Median 3702500 776860 2925600 0 0 0 3702500 776860 2925600 457 1972 470 1151 1806;1807 1806 2 AGGEAGVTLGQPHLSR ______________________________ GGEAGVTLGQPHLSRQDLTTLDVTKLTPLS M A G S R Q 2 1 0 0 0 1 1 4 1 0 2 0 0 0 1 1 1 0 0 1 0 0 16 0 1548.8009 P41091;Q2VIR3;F8W810 P41091 2 17 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 3.573E-12 121.04 1 2 1.8744 2.0271 42.705 3 Plateau 1.881 2.0345 NaN 1 0 Median 1.1481 0.97209 3.3119 2 0 Median 41050000 16716000 24334000 27026000 10182000 16843000 14025000 6533800 7490900 458 1559 471 1152;1153;1154 1808;1809;1810;1811;1812;1813;1814;1815 1809 8 AGGPEGPPWLPR NLLTVKDCLASIARRAGGPEGPPWLPRTFN ARRAGGPEGPPWLPRTFNLRTELPQFVSYF R A G P R T 1 1 0 0 0 0 1 3 0 0 1 0 0 0 4 0 0 1 0 0 0 0 12 0 1232.6302 A0A024R4U3;Q14166 A0A024R4U3 378 389 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 2 0.0045039 53.327 1 2.3458 2.414 NaN 1 Median 2.3458 2.414 NaN 1 0 Median NaN NaN NaN 0 0 Median 10176000 3137600 7038900 10176000 3137600 7038900 0 0 0 459 161 472 1155 1816 1816 1 AGGPPQVAGAQAACSEDR MQDADEPADSGGEGRAGGPPQVAGAQAACS PPQVAGAQAACSEDRMTLLLRLRAQTKQQL R A G D R M 5 1 0 1 1 2 1 3 0 0 0 0 0 0 2 1 0 0 0 1 0 0 18 0 1740.7849 B3KVZ3;A0A0S2Z5T0;Q9H3R5;D6RBJ6 B3KVZ3 22 39 CENPH Centromere protein H yes no 2 7.2719E-05 59.227 2 2 1.283 1.1223 8.4425 3 Median 0.99388 0.98839 NaN 1 0 Median 1.3288 1.1408 2.3208 2 0 Median 17317000 9859000 7457800 11715000 7510800 4204200 5601900 2348200 3253700 460 585 473 1156;1157;1158;1159 1817;1818;1819;1820;1821;1822 1819 6 AGGPTTPLSPTR ______________________________ GSRAGGPTTPLSPTRLSRLQEKEELRELND R A G T R L 1 1 0 0 0 0 0 2 0 0 1 0 0 0 3 1 3 0 0 0 0 0 12 0 1153.6091 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 15 26 LMNB1 Lamin-B1 yes no 2 0.00019062 76.85 2 1.3126 1.4809 9.9466 2 Median 1.3126 1.4809 9.9466 2 0 Median NaN NaN NaN 0 0 Median 162310000 67181000 95129000 162310000 67181000 95129000 0 0 0 461 1502 474 1160;1161 1823;1824;1825;1826 1826 4 AGGVGLNLSAASR NTEAGSPTIMLLSLKAGGVGLNLSAASRVF LKAGGVGLNLSAASRVFLMDPAWNPAAEDQ K A G S R V 3 1 1 0 0 0 0 3 0 0 2 0 0 0 0 2 0 0 0 1 0 0 13 0 1171.6309 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;H7C5K0 Q59GQ7 914 926 HLTF Helicase-like transcription factor yes no 2 0.00021471 69.786 2 1 0.47359 0.49435 20.312 3 Median 0.45234 0.46606 8.3339 2 0 Median 0.77813 0.65263 NaN 1 0 Median 54080000 36034000 18046000 49943000 34036000 15907000 4136800 1998200 2138500 462 512 475 1162;1163;1164 1827;1828;1829 1828 3 AGIFQPHVR GLSETILAVGLVKPKAGIFQPHVRHLLVLA GLVKPKAGIFQPHVRHLLVLATPVDIVILG K A G V R H 1 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 9 0 1023.5614 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 116 124 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.010456 38.086 1 1.3056 1.4263 NaN 1 Median 1.3056 1.4263 NaN 1 0 Median NaN NaN NaN 0 0 Median 37391000 15224000 22167000 37391000 15224000 22167000 0 0 0 463 39 476 1165 1830;1831 1830 2 AGIIASAR VDHGKSTLTDSLVCKAGIIASARAGETRFT TDSLVCKAGIIASARAGETRFTDTRKDEQE K A G A R A 3 1 0 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 8 0 757.44464 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 43 50 EEF2 Elongation factor 2 yes no 2 0.0015907 107.59 2 3.5636 4.0104 4.0329 2 Median 3.5636 4.0104 4.0329 2 0 Median NaN NaN NaN 0 0 Median 182840000 42417000 140430000 182840000 42417000 140430000 0 0 0 464 1478 477 1166;1167 1832;1833;1834;1835 1835 4 AGILTTLNAR AIHEVMEQQTISIAKAGILTTLNARCSILA ISIAKAGILTTLNARCSILAAANPAYGRYN K A G A R C 2 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1028.5978 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;Q9H4N9 B3KUD7 365 374 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.00016629 80.165 2 1 0.84437 0.73284 NaN 1 Median NaN NaN NaN 0 0 Median 0.84437 0.73284 NaN 1 0 Median 4308800 2438800 1870000 0 0 0 4308800 2438800 1870000 465 560 478 1168;1169;1170 1836;1837;1838 1837 3 AGITTIEAVK ______________________________ ______________________________ M A G V K R 2 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 2 0 0 1 0 0 10 0 1001.5757 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;Q8NAG3;B4DWT5;Q5VU61;A0A087WWU8;D6R904;D6RFM2 Q5HYB6 2 11 DKFZp686J1372;TPM3 yes no 1 0.0011026 74.127 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5243600 0 5243600 5243600 0 5243600 0 0 0 466 562 479 1171 1839 1839 1 AGITTTLNSR AIHEAMEQQTISIAKAGITTTLNSRCSVLA ISIAKAGITTTLNSRCSVLAAANSVFGRWD K A G S R C 1 1 1 0 0 0 0 1 0 1 1 0 0 0 0 1 3 0 0 0 0 0 10 0 1032.5564 B1AHB1;Q53FG5;B1AHB0;A8K521;P33992;B4DQ39;B3KVF0;B4DVK5;Q59F49 B1AHB1 429 438 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 2 0.0078188 56.916 1 0.84312 0.8586 NaN 1 Median 0.84312 0.8586 NaN 1 0 Median NaN NaN NaN 0 0 Median 18555000 9938800 8616200 18555000 9938800 8616200 0 0 0 467 745 480 1172 1840 1840 1 AGLAYHLR MTLKCHHCGKPYRSKAGLAYHLRSEHGPIS GKPYRSKAGLAYHLRSEHGPISFFPESGQP K A G L R S 2 1 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 899.49774 G3XAG1;Q96ME7;B4DES6;B7Z9P6;Q658M0;B4E0X7 G3XAG1 299 306 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2;3 0.0041107 107.74 3 2 0.63207 0.6093 24.625 4 Median 0.46937 0.493 29.35 2 0 Median 0.78678 0.65942 10.574 2 0 Median 102860000 77694000 25170000 91907000 71557000 20351000 10956000 6137200 4819100 468 1275 481 1173;1174;1175;1176;1177 1841;1842;1843;1844;1845;1846;1847 1843 7 AGLESGAEPGDGDSDTTK IKKEKKKSKKDKKAKAGLESGAEPGDGDSD ESGAEPGDGDSDTTKKKKKKKKAKEVELVS K A G T K K 2 0 0 3 0 0 2 4 0 0 1 1 0 0 1 2 2 0 0 0 0 0 18 0 1705.7279 O60832 O60832 481 498 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 8.6281E-40 160.18 2 2 0.85283 0.79218 28.006 4 Median 0.92192 1.0185 4.9329 2 0 Median 0.79044 0.62888 2.0447 2 0 Median 193950000 101160000 92781000 155320000 79568000 75747000 38631000 21597000 17034000 469 1398 482 1178;1179;1180;1181 1848;1849;1850;1851;1852;1853;1854 1849 7 AGLESGAEPGDGDSDTTKK IKKEKKKSKKDKKAKAGLESGAEPGDGDSD SGAEPGDGDSDTTKKKKKKKKAKEVELVSE K A G K K K 2 0 0 3 0 0 2 4 0 0 1 2 0 0 1 2 2 0 0 0 0 0 19 1 1833.8228 O60832 O60832 481 499 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 3 0.0020929 17.72 1 0.74869 0.65634 NaN 1 Median NaN NaN NaN 0 0 Median 0.74869 0.65634 NaN 1 0 Median 2851700 1320300 1531400 0 0 0 2851700 1320300 1531400 470 1398 483 1182 1855;1856 1856 2 AGLGSGLSLSGLVHPELSR AGLLLGEAGKQLRRRAGLGSGLSLSGLVHP SGLSLSGLVHPELSRSGELAVRALEQFATV R A G S R S 1 1 0 0 0 0 1 4 1 0 5 0 0 0 1 4 0 0 0 1 0 0 19 0 1849.0058 Q53HR2;B4DEA8;P49748;B3KPA6;B3KPX1;G3V1M7 Q53HR2 513 531 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 3 2.5849E-06 75.55 2 2 0.90087 0.85731 58.518 4 Median 1.2953 1.3955 2.2608 2 0 Median 0.60817 0.50795 7.3782 2 0 Median 90791000 44001000 46790000 72708000 32346000 40362000 18082000 11655000 6427300 471 965 484 1183;1184;1185;1186 1857;1858;1859;1860;1861;1862;1863;1864;1865 1860 9 AGLLHNILPSQSTDLHHSVGTELLSLVYK SRLAAVVSACKQLHRAGLLHNILPSQSTDL LHHSVGTELLSLVYKGIAPGDERQCLPSLD R A G Y K G 1 0 1 1 0 1 1 2 3 1 7 1 0 0 1 4 2 0 1 2 0 0 29 0 3141.6822 P78527 P78527 1461 1489 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 4 0.0017384 28.742 1 0.29133 0.23615 NaN 1 Median NaN NaN NaN 0 0 Median 0.29133 0.23615 NaN 1 0 Median 25076000 18692000 6384000 0 0 0 25076000 18692000 6384000 472 1665 485 1187 1866 1866 1 AGLLQNNLEEGNDLK PSDQGVIATMKRNYRAGLLQNNLEEGNDLK AGLLQNNLEEGNDLKSFWKKLTLLDALYEI R A G L K S 1 0 3 1 0 1 2 2 0 0 4 1 0 0 0 0 0 0 0 0 0 0 15 0 1626.8213 Q9Y4A0 Q9Y4A0 340 354 JRKL Jerky protein homolog-like yes yes 2 0.0040845 52.693 2 1.4394 1.1471 8.2108 2 Median NaN NaN NaN 0 0 Median 1.4394 1.1471 8.2108 2 0 Median 5668600 2366100 3302500 0 0 0 5668600 2366100 3302500 473 2144 486 1188;1189 1867;1868;1869 1868 3 AGLLQVYIHTQK THQSLLMLMDSPLNRAGLLQVYIHTQKNVL LNRAGLLQVYIHTQKNVLIEVNPQTRIPRT R A G Q K N 1 0 0 0 0 2 0 1 1 1 2 1 0 0 0 0 1 0 1 1 0 0 12 0 1369.7718 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65;A0A087WVM7;A0A0U3B3H7 A8K6D2 103 114 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2;3 1.0572E-05 107.79 3 4 1.2208 1.1674 8.4302 7 Median 1.1623 1.1815 7.7487 3 0 Median 1.4382 1.1488 8.3899 4 0 Median 178870000 76349000 102520000 100580000 43166000 57415000 78292000 33183000 45109000 474 759 487 1190;1191;1192;1193;1194;1195;1196 1870;1871;1872;1873;1874;1875;1876;1877;1878;1879;1880 1879 11 AGLNCSTENMPIK CYGYEGIDAVKEALRAGLNCSTENMPIKIN LRAGLNCSTENMPIKINLIAPPRYVMTTTT R A G I K I 1 0 2 0 1 0 1 1 0 1 1 1 1 0 1 1 1 0 0 0 0 0 13 0 1433.6643 Q53XC0;P05198;H0YJS4;G3V4T5 Q53XC0 214 226 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.0015195 64.439 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 475 1445 488 1197;1198 1881;1882 1882 1150 2 AGLPIYECNSR LHKFAYNDQGQVRLRAGLPIYECNSRCRCG VRLRAGLPIYECNSRCRCGYDCPNRVVQKG R A G S R C 1 1 1 0 1 0 1 1 0 1 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1278.6027 O43463;B4DMP6 O43463 215 225 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes no 2 0.00046763 76.17 1 1 1.3054 1.2594 31.842 2 Median 0.87203 1.0055 NaN 1 0 Median 1.954 1.5775 NaN 1 0 Median 83035000 41967000 41068000 72159000 38139000 34020000 10876000 3828300 7048200 476 1385 489 1199;1200 1883;1884;1885 1883 3 AGLQFPVGR QGGKARAKAKTRSSRAGLQFPVGRVHRLLR KTRSSRAGLQFPVGRVHRLLRKGNYAERVG R A G G R V 1 1 0 0 0 1 0 2 0 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 943.52395 Q8IUE6;V9GZN0;A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908;B2R5B6;Q71UI9;P0C0S5;C9J0D1;Q96QV6;P16104 Q71UI9 22 30 HIST2H2AB;HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;HIST1H2AC;HIST3H2A;H2AFV;H2AFZ;HIST1H2AA;H2AFX Histone H2A type 2-B;Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.V;Histone H2A.Z;Histone H2A type 1-A;Histone H2AX no no 2 8.8652E-08 127.84 45 1 0.72232 0.76082 11.279 10 Median 0.72232 0.76082 11.279 10 0 Median NaN NaN NaN 0 0 Median 27989000000 27836000000 152570000 26407000000 26254000000 152570000 1582100000 1582100000 0 477 312;832;1462;1487;1890 490 1201;1202;1203;1204;1205;1206;1207;1208;1209;1210;1211;1212;1213;1214;1215;1216;1217;1218;1219;1220;1221;1222;1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233;1234;1235;1236;1237;1238;1239;1240;1241;1242;1243;1244;1245;1246 1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902;1903;1904;1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952;1953;1954 1897 69 AGLSEEDDSLVDVYYR ESGSEQERVSKKPKKAGLSEEDDSLVDVYY GLSEEDDSLVDVYYREGKEEAEETNVLPKE K A G Y R E 1 1 0 3 0 0 2 1 0 0 2 0 0 0 0 2 0 0 2 2 0 0 16 0 1829.8319 Q14690 Q14690 1490 1505 PDCD11 Protein RRP5 homolog yes yes 2 3.6725E-05 84.718 2 1.243 1.0424 8.9717 2 Median NaN NaN NaN 0 0 Median 1.243 1.0424 8.9717 2 0 Median 40161000 17074000 23087000 0 0 0 40161000 17074000 23087000 478 1741 491 1247;1248 1955;1956;1957;1958 1958 4 AGLSHYVK RPRTTGPRPRQDPHKAGLSHYVKLFSFYAK PRQDPHKAGLSHYVKLFSFYAKMPMERKAL K A G V K L 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 1 0 0 1 1 0 0 8 0 873.47085 H3BTR4;B3KPB2;Q96BT3;A8K662;B4DV17;B4DWP4 H3BTR4 403 410 CENPT Centromere protein T yes no 2 0.040852 47.082 1 1.3161 1.0679 NaN 1 Median NaN NaN NaN 0 0 Median 1.3161 1.0679 NaN 1 0 Median 2828400 1197200 1631200 0 0 0 2828400 1197200 1631200 479 920 492 1249 1959 1959 1 AGLSPANCQSDR EKGISGSKAAGEGSKAGLSPANCQSDRVNL GSKAGLSPANCQSDRVNLEKSLLMKKAALP K A G D R V 2 1 1 1 1 1 0 1 0 0 1 0 0 0 1 2 0 0 0 0 0 0 12 0 1274.5673 Q14692 Q14692 549 560 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 1.9348E-05 103.7 2 1 1.0299 1.0252 14.676 3 Median 1.0026 1.0091 2.2444 2 0 Median 1.5146 1.2992 NaN 1 0 Median 31373000 14068000 17305000 22927000 10825000 12102000 8445600 3242700 5202900 480 1742 493 1250;1251;1252 1960;1961;1962;1963;1964;1965 1961 6 AGLSQSLFER HCQLGPVVMCKKAAKAGLSQSLFERLVVLG KKAAKAGLSQSLFERLVVLGIRPIRLQVQY K A G E R L 1 1 0 0 0 1 1 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 10 0 1106.572 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 678 687 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.00097865 78.149 1 3.25 3.2683 NaN 1 Median 3.25 3.2683 NaN 1 0 Median NaN NaN NaN 0 0 Median 15887000 3873100 12014000 15887000 3873100 12014000 0 0 0 481 231 494 1253 1966 1966 1 AGLTEPVLIR LFSATLPKLLVEFARAGLTEPVLIRLDVDT VEFARAGLTEPVLIRLDVDTKLNEQLKTSF R A G I R L 1 1 0 0 0 0 1 1 0 1 2 0 0 0 1 0 1 0 0 1 0 0 10 0 1067.6339 Q8TDD1 Q8TDD1 291 300 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 9.6551E-10 133.86 2 2 1.1323 1.1262 7.7722 4 Median 1.0273 1.1596 4.4412 2 0 Median 1.299 1.0595 8.9439 2 0 Median 189540000 94906000 94631000 166900000 84701000 82196000 22640000 10205000 12435000 482 1933 495 1254;1255;1256;1257 1967;1968;1969;1970;1971;1972 1970 6 AGLTPEVQK LSQAVKAGCPLDLERAGLTPEVQKIIADVI PLDLERAGLTPEVQKIIADVIRNPPVNSDM R A G Q K I 1 0 0 0 0 1 1 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 9 0 941.5182 Q14191;Q59F09 Q14191 1306 1314 WRN Werner syndrome ATP-dependent helicase yes no 2 0.0039937 77.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6165800 0 6165800 6165800 0 6165800 0 0 0 483 1728 496 1258 1973 1973 1 AGLVGPEFHEK DPATSARLTVDEAVRAGLVGPEFHEKLLSA EAVRAGLVGPEFHEKLLSAEKAVTGYRDPY R A G E K L 1 0 0 0 0 0 2 2 1 0 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1182.6033 Q15149;D3DWL0 Q15149 3221 3231 PLEC;PLEC1 Plectin yes no 2;3 0.002166 66.299 4 1.6109 1.6287 19.302 3 Median 1.6109 1.6287 19.302 3 0 Median NaN NaN NaN 0 0 Median 190270000 51203000 139070000 190270000 51203000 139070000 0 0 0 484 1754 497 1259;1260;1261;1262 1974;1975;1976;1977 1977 4 AGMSAEQAQGLLEK EDITEPQSILAAAEKAGMSAEQAQGLLEKI KAGMSAEQAQGLLEKIATPKVKNQLKETTE K A G E K I 3 0 0 0 0 2 2 2 0 0 2 1 1 0 0 1 0 0 0 0 0 0 14 0 1431.7028 Q2NLC8;E9PFN5;Q6FII1;Q9Y2Q3 Q2NLC8 92 105 GSTK1;LOC51064 Glutathione S-transferase kappa 1 yes no 2 0.00030311 74.962 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5018300 0 5018300 5018300 0 5018300 0 0 0 485 1234 498 1263 1978 1978 950 1 AGMTHIVR DPSKPVHLTAFLGYKAGMTHIVREVDRPGS TAFLGYKAGMTHIVREVDRPGSKVNKKEVV K A G V R E 1 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 8 0 883.46981 P39023;Q8TBW1;Q96QL0;H7C422;H7C3M2;B4DN06;F8WCR1;B3KS36 P39023 51 58 RPL3 60S ribosomal protein L3 no no 2 0.0048039 92.47 2 1.2284 1.0051 0.75297 2 Median NaN NaN NaN 0 0 Median 1.2284 1.0051 0.75297 2 0 Median 26056000 12044000 14013000 0 0 0 26056000 12044000 14013000 486 1554;936 499 1264;1265 1979;1980;1981;1982 1982 4 AGNALTPELAPVQIK PSGRKRRRVPRDGRRAGNALTPELAPVQIK AGNALTPELAPVQIKVEEDFGFEADEALDS R A G I K V 3 0 1 0 0 1 1 1 0 1 2 1 0 0 2 0 1 0 0 1 0 0 15 0 1520.8562 A0A024R4Q5;P0C1Z6 A0A024R4Q5 202 216 TFPT TCF3 fusion partner yes no 2 0.047761 23.676 2 1.6443 1.3053 1.92 2 Median NaN NaN NaN 0 0 Median 1.6443 1.3053 1.92 2 0 Median 6222300 2391700 3830600 0 0 0 6222300 2391700 3830600 487 159 500 1266;1267 1983;1984 1984 2 AGNEKEEGETADTVGCCSLR QRAVALYFIDKLALRAGNEKEEGETADTVG EEGETADTVGCCSLRVEHINLHPELDGQEY R A G L R V 2 1 1 1 2 0 4 3 0 0 1 1 0 0 0 1 2 0 0 1 0 0 20 1 2181.9267 P11387;B9EG90 P11387 489 508 TOP1 DNA topoisomerase 1 yes no 3 0.0016284 31.314 2 2.0395 1.7259 0.94256 2 Median NaN NaN NaN 0 0 Median 2.0395 1.7259 0.94256 2 0 Median 6052600 2032500 4020100 0 0 0 6052600 2032500 4020100 488 1470 501 1268;1269 1985;1986 1985 2 AGNFYVPAEPK QMYRTEIRMARMARKAGNFYVPAEPKLAFV MARKAGNFYVPAEPKLAFVIRIRGINGVSP K A G P K L 2 0 1 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 1 1 0 0 11 0 1191.5924 A0A024R814;P18124;A8MUD9;C9JIJ5;C9JZ88 A0A024R814 89 99 RPL7 60S ribosomal protein L7 yes no 2 0.00028717 89.029 2 1 0.92949 1.1059 29.604 3 Plateau 0.92841 1.0988 0.90415 2 0 Median 0.77925 0.65812 NaN 1 0 Median 1120600000 574120000 546470000 1063900000 542850000 521010000 56732000 31262000 25469000 489 240 502 1270;1271;1272 1987;1988;1989;1990;1991;1992;1993;1994 1988 8 AGNLGGGVVTIER NFEQFLQERIKVNGKAGNLGGGVVTIERSK GKAGNLGGGVVTIERSKSKITVTSEVPFSK K A G E R S 1 1 1 0 0 0 1 4 0 1 1 0 0 0 0 0 1 0 0 2 0 0 13 0 1241.6728 Q7Z4W8;P35268;K7EJT5;K7EP65;K7EKS7;K7ELC4;K7EMH1;K7ERI7 Q7Z4W8 53 65 RPL22 60S ribosomal protein L22 yes no 2 0.00012284 87.184 2 2 0.90886 0.91272 4.996 4 Median 0.80945 0.95621 1.2204 2 0 Median 1.0092 0.87772 0.16894 2 0 Median 2105000000 1139800000 965280000 1802600000 992650000 809920000 302460000 147100000 155360000 490 1543 503 1273;1274;1275;1276 1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005;2006;2007;2008;2009 1997 15 AGNVIFR ITGDFALVKAWKADRAGNVIFRKSARNFNL VKAWKADRAGNVIFRKSARNFNLPMCKAAE R A G F R K 1 1 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 775.43407 Q6IAV5;A0A024R040;P55809;A1E286;E9PDW2;B7Z609 Q6IAV5 218 224 OXCT;OXCT1 Succinyl-CoA:3-ketoacid-coenzyme A transferase;Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 2 0.032172 82.263 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9665800 0 9665800 9665800 0 9665800 0 0 0 491 35 504 1277 2010 2010 1 AGPESDAQYQFTGIK ______________________________ AGPESDAQYQFTGIKKYFNSYTLTGRMNCV M A G I K K 2 0 0 1 0 2 1 2 0 1 0 1 0 1 1 1 1 0 1 0 0 0 15 0 1610.7577 Q96IX5 Q96IX5 2 16 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 2 0.001153 48.568 1 2 1.3227 1.0291 24.457 3 Median 0.77749 0.78593 NaN 1 0 Median 1.4425 1.148 15.463 2 0 Median 10486000 4724900 5761600 5623300 2792700 2830600 4863100 1932100 2931000 492 1973 505 1278;1279;1280 2011;2012;2013;2014;2015 2012 5 AGPFDEFQIATMLK IMEYLGGGSALDLLRAGPFDEFQIATMLKE RAGPFDEFQIATMLKEILKGLDYLHSEKKI R A G L K E 2 0 0 1 0 1 1 1 0 1 1 1 1 2 1 0 1 0 0 0 0 0 14 0 1566.7752 Q8NBY1;B4E0Y9;Q9P289;Q499L9 Q8NBY1 113 126 STK26;MST4 Serine/threonine-protein kinase 26 yes no 2 0.0064439 44.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9676700 0 9676700 9676700 0 9676700 0 0 0 493 1065 506 1281 2016 2016 826 1 AGPGDRDPPTRGEESR TASETESEKREEPNRAGPGDRDPPTRGEES GPGDRDPPTRGEESRRRPTGGRGRGPPPAP R A G S R R 1 3 0 2 0 0 2 3 0 0 0 0 0 0 3 1 1 0 0 0 0 0 16 2 1695.7925 P51116 P51116 466 481 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 0.063407 16.88 1 1.201 1.4432 NaN 1 Median NaN NaN NaN 0 0 Median 1.201 1.4432 NaN 1 0 Median 1072400 497580 574840 0 0 0 1072400 497580 574840 494 1593 507 1282 2017 2017 1 AGPGSEELTVTNAR TGTRKGQGGECEIRRAGPGSEELTVTNARY RAGPGSEELTVTNARYVPVSCEKEVDALLH R A G A R Y 2 1 1 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 0 1 0 0 14 0 1400.6896 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 490 503 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 8.7491E-05 87.363 2 0.70038 0.74176 29.881 2 Median 0.70038 0.74176 29.881 2 0 Median NaN NaN NaN 0 0 Median 60941000 32964000 27977000 60941000 32964000 27977000 0 0 0 495 371 508 1283;1284 2018;2019;2020;2021 2020 4 AGPGSLELCGLPSQK SHTTLPQRRRLQKKKAGPGSLELCGLPSQK AGPGSLELCGLPSQKTASLKKRKKMRVMSN K A G Q K T 1 0 0 0 1 1 1 3 0 0 3 1 0 0 2 2 0 0 0 0 0 0 15 0 1512.7606 Q14684 Q14684 575 589 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 5.9063E-31 160.56 3 2 1.4853 1.3271 12.272 4 Median 1.1955 1.2012 6.1186 2 0 Median 1.8443 1.4609 5.597 2 0 Median 88878000 31232000 57646000 56987000 23404000 33583000 31891000 7828400 24063000 496 1740 509 1285;1286;1287;1288;1289 2022;2023;2024;2025;2026;2027;2028;2029;2030;2031 2023 10 AGPGSSPLFSLLPGYR VPFMDSEAESENPPRAGPGSSPLFSLLPGY GPGSSPLFSLLPGYRGHPSFQSLVSKLRSQ R A G Y R G 1 1 0 0 0 0 0 3 0 0 3 0 0 1 3 3 0 0 1 0 0 0 16 0 1617.8515 A0A024R0Q0;Q9H0W8 A0A024R0Q0 446 461 FLJ12886;SMG9 Protein SMG9 yes no 2 0.0029665 38.634 1 1.4611 1.5444 NaN 1 Median 1.4611 1.5444 NaN 1 0 Median NaN NaN NaN 0 0 Median 3909600 1060000 2849600 3909600 1060000 2849600 0 0 0 497 54 510 1290 2032 2032 1 AGPGTLSVTIEGPSK GTTGIQSEFFINTTRAGPGTLSVTIEGPSK AGPGTLSVTIEGPSKVKMDCQETPEGYKVM R A G S K V 1 0 0 0 0 0 1 3 0 1 1 1 0 0 2 2 2 0 0 1 0 0 15 0 1412.7511 O75369;A0A024R321;Q68CT4;E7EN95 O75369 2412 2426 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0018874 46.481 1 1.5236 1.5936 NaN 1 Median 1.5236 1.5936 NaN 1 0 Median NaN NaN NaN 0 0 Median 11970000 4991600 6978800 11970000 4991600 6978800 0 0 0 498 1402 511 1291 2033 2033 1 AGPIWDLR PRDLYEDELVPLFEKAGPIWDLRLMMDPLS LVPLFEKAGPIWDLRLMMDPLSGQNRGYAF K A G L R L 1 1 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 8 0 926.4974 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5;B4DT28;Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645 B2R7W4 188 195 HNRNPR;HNRPR;DKFZp686A13234;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2 0.0062953 87.754 2 1.208 1.2946 7.9838 2 Median 1.208 1.2946 7.9838 2 0 Median NaN NaN NaN 0 0 Median 79126000 37664000 41461000 79126000 37664000 41461000 0 0 0 499 855;864 512 1292;1293 2034;2035;2036;2037 2037 4 AGPNASIISLK IIRGDDEEWNEVLNKAGPNASIISLKSDKK VLNKAGPNASIISLKSDKKRKLEAKQEPKQ K A G L K S 2 0 1 0 0 0 0 1 0 2 1 1 0 0 1 2 0 0 0 0 0 0 11 0 1069.6132 Q9H0A0 Q9H0A0 979 989 NAT10 N-acetyltransferase 10 yes yes 2 2.4636E-08 121.5 2 2 1.1902 1.1959 5.3431 4 Median 0.96612 1.1424 3.5829 2 0 Median 1.45 1.2404 2.2681 2 0 Median 1285200000 636770000 648420000 1114500000 567060000 547410000 170720000 69706000 101010000 500 2023 513 1294;1295;1296;1297 2038;2039;2040;2041;2042;2043 2041 6 AGPSFEER EELTNTSKKALKQYRAGPSFEERKQLGLPH KALKQYRAGPSFEERKQLGLPHQRRGGNFK R A G E R K 1 1 0 0 0 0 2 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 8 0 891.40865 B7Z6D5;Q96GQ7 B7Z6D5 734 741 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.031343 51.346 1 0.69053 0.70642 NaN 1 Median 0.69053 0.70642 NaN 1 0 Median NaN NaN NaN 0 0 Median 32971000 18785000 14186000 32971000 18785000 14186000 0 0 0 501 1099 514 1298 2044 2044 1 AGPVAVQVK QAKPTSSPAKGPPQKAGPVAVQVKAEKPMD KGPPQKAGPVAVQVKAEKPMDNSESSEESS K A G V K A 2 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 3 0 0 9 0 867.5178 E7ETY2;B4DRA2;B4DLB1;Q13428;Q59FZ2 Q13428 592 600 TCOF1 Treacle protein no no 2 0.023334 56.27 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22330000 0 22330000 22330000 0 22330000 0 0 0 502 1712;1225 515 1299 2045 2045 1 AGQAGLPCDYTANSK EKLPPLVAGKSAKPRAGQAGLPCDYTANSK AGQAGLPCDYTANSKGGVTTQALAKYLKAL R A G S K G 3 0 1 1 1 1 0 2 0 0 1 1 0 0 1 1 1 0 1 0 0 0 15 0 1551.6988 P07199 P07199 252 266 CENPB Major centromere autoantigen B yes yes 2 0.00021983 63.473 3 2 1.3936 1.2525 28.272 4 Median 0.95452 0.98589 0.90938 2 0 Median 1.9956 1.6077 2.363 2 0 Median 63881000 34173000 29709000 42699000 27431000 15269000 21182000 6742000 14440000 503 1450 516 1300;1301;1302;1303;1304 2046;2047;2048;2049;2050;2051 2046 6 AGQLLEVLQDAEAAVAGPSHAPDTSDVGATLLVSDGTHSVR IRELILGSETPSSPRAGQLLEVLQDAEAAV VGATLLVSDGTHSVRCLVTREALDTSDWEE R A G V R C 7 1 0 4 0 2 2 4 2 0 5 0 0 0 2 4 3 0 0 5 0 0 41 0 4054.0243 A0A0C4DGT6;Q96AP0;B4DVI0 A0A0C4DGT6 28 68 ACD Adrenocortical dysplasia protein homolog yes no 4 0.02657 21.047 1 1.4906 1.4941 NaN 1 Median 1.4906 1.4941 NaN 1 0 Median NaN NaN NaN 0 0 Median 9076200 4118400 4957700 9076200 4118400 4957700 0 0 0 504 517 517 1305 2052 2052 1 AGQSAAGAAPGGGVDTR ______________________________ QSAAGAAPGGGVDTRDAEMPATEKDLAEDA R A G T R D 5 1 0 1 0 1 0 5 0 0 0 0 0 0 1 1 1 0 0 1 0 0 17 0 1441.691 P21333;Q5HY54 P21333 8 24 FLNA Filamin-A yes no 2 0.039458 39.424 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 505 1504 518 1306 2053 2053 1 AGQVVTIWAAGAGATHSPPTDLVWK DPLLTYRFPPKFTLKAGQVVTIWAAGAGAT GAGATHSPPTDLVWKAQNTWGCGNSLRTAL K A G W K A 5 0 0 1 0 1 0 3 1 1 1 1 0 0 2 1 3 2 0 3 0 0 25 0 2532.3125 P02545;W8QEH3;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 491 515 LMNA Prelamin-A/C;Lamin-A/C yes no 3 1.9136E-16 93.397 2 2 1.212 1.2253 6.3792 4 Linear 1.0788 1.1819 6.6586 2 0 Median 1.3291 1.0821 0.067675 2 0 Median 146590000 68329000 78258000 92657000 45621000 47035000 53931000 22708000 31223000 506 1440 519 1307;1308;1309;1310 2054;2055;2056;2057;2058;2059;2060;2061;2062 2059 9 AGSATVLSGSIAGLEGGSQLALR QDSQKKIISNLFLGRAGSATVLSGSIAGLE GSIAGLEGGSQLALRRATSMRKTFTTGMAA R A G L R R 4 1 0 0 0 1 1 5 0 1 4 0 0 0 0 4 1 0 0 1 0 0 23 0 2114.1331 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8 A0A0D9SFK2 977 999 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.024379 33.301 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 507 12 520 1311 2063 2063 1 AGSLGINLVAANR DETNVRGRLFIISTKAGSLGINLVAANRVI TKAGSLGINLVAANRVIIFDASWNPSYDIQ K A G N R V 3 1 2 0 0 0 0 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1254.7044 A4LAA3;P46100;B4DHH8;B4DLE1 A4LAA3 2119 2131 ATRX Transcriptional regulator ATRX yes no 2 1.6519E-09 123.63 2 2 0.95073 0.92343 20.357 4 Median 0.7145 0.76458 12.288 2 0 Median 1.2553 1.0599 5.0812 2 0 Median 89976000 50328000 39648000 79890000 45591000 34299000 10086000 4737000 5348900 508 672 521 1312;1313;1314;1315 2064;2065;2066;2067 2064 4 AGSLYLSGAPGTGK DVIRNFLREHICGKKAGSLYLSGAPGTGKT KAGSLYLSGAPGTGKTACLSRILQDLKKEL K A G G K T 2 0 0 0 0 0 0 4 0 0 2 1 0 0 1 2 1 0 1 0 0 0 14 0 1277.6616 B2R935;A0A024R1S2;Q99741 B2R935 195 208 CDC6 Cell division control protein 6 homolog yes no 2 0.0021776 65.695 2 2 1.9383 1.6932 NaN 1 Median NaN NaN NaN 0 0 Median 1.9383 1.6932 NaN 1 0 Median 2379300 515780 1863500 0 0 0 2379300 515780 1863500 509 85 522 1316;1317;1318;1319 2068;2069;2070;2071 2069 4 AGSQLGPGYQHHAQPK WTDVETRCSVAVEMRAGSQLGPGYQHHAQP GSQLGPGYQHHAQPKRKKP___________ R A G P K R 2 0 0 0 0 3 0 3 2 0 1 1 0 0 2 1 0 0 1 0 0 0 16 0 1674.8227 H7BYN4;Q02241 H7BYN4 933 948 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 3 2.2768E-05 81.632 1 1 1.1858 1.0737 53.351 2 Median 0.73583 0.73628 NaN 1 0 Median 1.9109 1.5657 NaN 1 0 Median 16456000 8889400 7566800 14001000 7892900 6108100 2455200 996520 1458700 510 1312 523 1320;1321 2072;2073;2074;2075 2072 4 AGSTSWTGFQTK HTEEQSKVPPEQKRKAGSTSWTGFQTKAEV KRKAGSTSWTGFQTKAEVEQVELPDGKKRR K A G T K A 1 0 0 0 0 1 0 2 0 0 0 1 0 1 0 2 3 1 0 0 0 0 12 0 1269.599 A0A024R753;Q9NW13 A0A024R753 642 653 RBM28 RNA-binding protein 28 yes no 2 0.037481 34.692 1 1.1576 0.94545 NaN 1 Median NaN NaN NaN 0 0 Median 1.1576 0.94545 NaN 1 0 Median 4718900 2366300 2352600 0 0 0 4718900 2366300 2352600 511 214 524 1322 2076 2076 1 AGTDPSHMPTGPQAASCLDLNLVTR NTAEGCVHETQEKQKAGTDPSHMPTGPQAA GPQAASCLDLNLVTRVYSTALSSFLTKRNS K A G T R V 3 1 1 2 1 1 0 2 1 0 3 0 1 0 3 2 3 0 0 1 0 0 25 0 2608.2374 Q9BQG0;I3L1L3 Q9BQG0 952 976 MYBBP1A Myb-binding protein 1A yes no 3 2.7185E-13 74.876 5 1 1.0536 1.1539 42.4 3 Plateau 1.0383 1.108 5.7449 2 0 Median 0.64174 0.53341 NaN 1 0 Median 70237000 30043000 40194000 62637000 25376000 37261000 7600300 4666900 2933400 512 1997 525 1323;1324;1325;1326;1327;1328 2077;2078;2079;2080;2081;2082;2083;2084;2085;2086;2087;2088 2086 1830 12 AGTDSPVSCASVTEER IPKAKNKSESENEPKAGTDSPVSCASVTEE GTDSPVSCASVTEERVASDSPKPALTLQQG K A G E R V 2 1 0 1 1 0 2 1 0 0 0 0 0 0 1 3 2 0 0 2 0 0 16 0 1664.7312 E9PEI0;Q69YH5 E9PEI0 691 706 CDCA2 Cell division cycle-associated protein 2 yes no 2 2.8459E-05 92.856 4 2 1.5261 1.2814 6.5509 2 Median NaN NaN NaN 0 0 Median 1.5261 1.2814 6.5509 2 0 Median 16281000 9224100 7056700 5553500 5553500 0 10727000 3670600 7056700 513 1233 526 1329;1330;1331;1332;1333;1334 2089;2090;2091;2092;2093;2094;2095 2091 7 AGTEPSDAIR IDEVESLTAARNACRAGTEPSDAIRVVNAV RNACRAGTEPSDAIRVVNAVLTQIDQIKRH R A G I R V 2 1 0 1 0 0 1 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 10 0 1015.4934 Q15645 Q15645 266 275 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 1.1374E-05 104.2 1 1.6367 1.6607 NaN 1 Median 1.6367 1.6607 NaN 1 0 Median NaN NaN NaN 0 0 Median 27958000 9589000 18369000 27958000 9589000 18369000 0 0 0 514 1763 527 1335 2096 2096 1 AGTFQAFEQFGQQLLAHGHYASPEIK LLERHQEHRTEIDARAGTFQAFEQFGQQLL QQLLAHGHYASPEIKQKLDILDQERADLEK R A G I K Q 4 0 0 0 0 4 2 3 2 1 2 1 0 3 1 1 1 0 1 0 0 0 26 0 2874.4089 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1372 1397 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 4 0.0011034 33.814 1 2.9108 2.3736 NaN 1 Median NaN NaN NaN 0 0 Median 2.9108 2.3736 NaN 1 0 Median 7749500 1955500 5794000 0 0 0 7749500 1955500 5794000 515 523 528 1336 2097 2097 1 AGTGVDNVDLEAATR ADVINAAEKLQVVGRAGTGVDNVDLEAATR AGTGVDNVDLEAATRKGILVMNTPNGNSLS R A G T R K 3 1 1 2 0 0 1 2 0 0 1 0 0 0 0 0 2 0 0 2 0 0 15 0 1487.7216 O43175;V9HW79;Q5SZU1;B3KSC3 O43175 76 90 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 7.6849E-06 108.59 1 2 2.0225 1.9473 107.7 2 Median 3.6381 4.1704 NaN 1 0 Median 1.1244 0.90924 NaN 1 0 Median 99253000 18722000 80531000 82626000 13583000 69042000 16627000 5138700 11489000 516 1382 529 1337;1338;1339 2098;2099;2100;2101;2102 2099 5 AGTLLPVIQFLQK THKLLMLHGQKLKSRAGTLLPVIQFLQKSI SRAGTLLPVIQFLQKSIQRHLDDLSKLCSW R A G Q K S 1 0 0 0 0 2 0 1 0 1 3 1 0 1 1 0 1 0 0 1 0 0 13 0 1426.8548 Q15269;A0A0B4J2E5;A0A096LPI6 Q15269 838 850 PWP2 Periodic tryptophan protein 2 homolog yes no 2 1.1434E-08 113.62 2 1 0.96994 1.127 6.3194 3 Median 0.9191 1.0833 8.3333 2 0 Median 1.3306 1.127 NaN 1 0 Median 848500000 409220000 439280000 787390000 383210000 404180000 61111000 26011000 35100000 517 1756 530 1340;1341;1342 2103;2104;2105;2106;2107 2103 4 AGTLSITEFADMLSGNAGGFR IAKNLIDRSALDQYRAGTLSITEFADMLSG TEFADMLSGNAGGFRSRSSSVGSSSSYPIS R A G F R S 3 1 1 1 0 0 1 4 0 1 2 0 1 2 0 2 2 0 0 0 0 0 21 0 2114.0103 Q15149;D3DWL0;Q96IE3 Q15149 4361 4381 PLEC;PLEC1 Plectin yes no 2 1.4992E-08 74.678 3 2.1233 2.1345 9.2119 2 Median 2.1233 2.1345 9.2119 2 0 Median NaN NaN NaN 0 0 Median 46892000 12515000 34377000 46892000 12515000 34377000 0 0 0 518 1754 531 1343;1344;1345 2108;2109;2110;2111;2112;2113 2108 1606 6 AGTYFSNQAVR FFTGVVDFMHLDPKKAGTYFSNQAVRACIL DPKKAGTYFSNQAVRACILCVHPRTRVVHL K A G V R A 2 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 0 11 0 1212.5887 Q14690;B4DH82;B4DES7 Q14690 318 328 PDCD11 Protein RRP5 homolog yes no 2 7.5655E-10 126.07 2 2 1.1681 1.0513 15.482 4 Median 0.89981 1.0094 26.465 2 0 Median 1.2934 1.0513 1.49 2 0 Median 201840000 101850000 99993000 177370000 91076000 86294000 24472000 10772000 13699000 519 1741 532 1346;1347;1348;1349 2114;2115;2116;2117;2118 2114 5 AGVAAPATQVAQVTLQSVQR ERLVAIRTEYNLRLKAGVAAPATQVAQVTL PATQVAQVTLQSVQRRPELEDSTLRYLQDL K A G Q R R 5 1 0 0 0 4 0 1 0 0 1 0 0 0 1 1 2 0 0 4 0 0 20 0 1994.0909 Q15149;E9PMV1 Q15149 631 650 PLEC Plectin yes no 2 1.5053E-06 84.468 2 2 2.1553 2.0857 29.816 4 Median 1.4792 1.6069 4.8615 2 0 Median 3.1785 2.6836 3.625 2 0 Median 100270000 38846000 61422000 87864000 35894000 51971000 12404000 2952400 9451700 520 1754 533 1350;1351;1352;1353 2119;2120;2121;2122;2123;2124;2125;2126;2127 2122 9 AGVIFPVGR RGGKKKSTKTSRSAKAGVIFPVGRMLRYIK TSRSAKAGVIFPVGRMLRYIKKGHPKYRIG K A G G R M 1 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 0 0 2 0 0 9 0 914.53379 O75367;B4DJC3;D6RCF2;Q5SQT3 O75367 19 27 H2AFY;H2AFY2 Core histone macro-H2A.1;Histone H2A no no 2 0.0019213 79.116 2 2 1.054 1.0778 13.367 4 Median 1.015 1.2058 1.5083 2 0 Median 1.0999 0.95814 2.2738 2 0 Median 4062500000 1990600000 2072000000 3622900000 1780900000 1842000000 439650000 209680000 229970000 521 1401 534 1354;1355;1356;1357 2128;2129;2130;2131;2132;2133;2134;2135;2136;2137 2135 10 AGVLAHLEEER DSNLYRIGQSKVFFRAGVLAHLEEERDLKI VFFRAGVLAHLEEERDLKITDVIIGFQACC R A G E R D 2 1 0 0 0 0 3 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1222.6306 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;P35580 A0A024R1N1 765 775 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 2.2527E-12 128.86 4 2 1.5987 2.0263 22.514 4 Linear 1.6409 1.8819 1.3982 2 0 Median 1.5263 1.2782 4.7221 2 0 Median 574290000 233780000 340510000 557030000 227940000 329090000 17257000 5842800 11414000 522 81;1544 535 1358;1359;1360;1361;1362;1363 2138;2139;2140;2141;2142;2143;2144;2145 2140 8 AGVLAHLEEERDLK DSNLYRIGQSKVFFRAGVLAHLEEERDLKI RAGVLAHLEEERDLKITDVIIGFQACCRGY R A G L K I 2 1 0 1 0 0 3 1 1 0 3 1 0 0 0 0 0 0 0 1 0 0 14 1 1578.8366 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;P35580 A0A024R1N1 765 778 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 0.00010613 65.092 2 3.0816 2.612 0.21403 2 Median NaN NaN NaN 0 0 Median 3.0816 2.612 0.21403 2 0 Median 17554000 4800200 12754000 0 0 0 17554000 4800200 12754000 523 81;1544 536 1364;1365 2146;2147 2146 2 AGVMALANLLQIQR AEPLINLDVNNPDFKAGVMALANLLQIQRH KAGVMALANLLQIQRHDDYLVMLKAIRILV K A G Q R H 3 1 1 0 0 2 0 1 0 1 3 0 1 0 0 0 0 0 0 1 0 0 14 0 1496.8497 Q5RLJ0;Q549M8;Q9Y224;G3V4C6;H0YJB9 Q5RLJ0 132 145 C14orf166 UPF0568 protein C14orf166 yes no 2 3.5531E-19 123.86 4 1 1.3319 1.284 3.203 3 Plateau 1.3319 1.284 3.203 3 0 Plateau NaN NaN NaN 0 0 Median 52229000 25076000 27152000 51259000 24107000 27152000 969610 969610 0 524 1793 537 1366;1367;1368;1369;1370 2148;2149;2150;2151;2152 2151 1659 3 AGVNTVTTLVENK AGKGDVPTKRPPVLRAGVNTVTTLVENKKA LRAGVNTVTTLVENKKAQLVVIAHDVDPIE R A G N K K 1 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 3 0 0 3 0 0 13 0 1344.7249 P62424;Q5T8U3;Q9BY74;Q5T8U2 P62424 138 150 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 2.1389E-13 132.44 2 2 0.86528 0.8692 24.992 4 Median 0.91413 1.0856 1.9752 2 0 Median 0.8189 0.70451 0.23869 2 0 Median 1933600000 1026500000 907140000 1703800000 900580000 803180000 229830000 125880000 103960000 525 1648 538 1371;1372;1373;1374 2153;2154;2155;2156;2157;2158;2159;2160;2161;2162 2155 10 AGVNTVTTLVENKK AGKGDVPTKRPPVLRAGVNTVTTLVENKKA RAGVNTVTTLVENKKAQLVVIAHDVDPIEL R A G K K A 1 0 2 0 0 0 1 1 0 0 1 2 0 0 0 0 3 0 0 3 0 0 14 1 1472.8199 P62424;Q5T8U3;Q9BY74;Q5T8U2 P62424 138 151 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2;3 5.9207E-14 139.32 4 4 0.83074 0.74678 25.558 8 Median 0.91975 1.0757 17.824 4 0 Median 0.77651 0.65915 8.0463 4 0 Median 1024400000 555820000 468550000 820300000 441570000 378730000 204060000 114250000 89816000 526 1648 539 1375;1376;1377;1378;1379;1380;1381;1382 2163;2164;2165;2166;2167;2168;2169;2170;2171;2172;2173;2174;2175 2169 12 AGVPGVAAPGAPAAAPPAK VTAGKLARAPADPGKAGVPGVAAPGAPAAA GVAAPGAPAAAPPAKEIPEVLVDPRSRRRY K A G A K E 8 0 0 0 0 0 0 3 0 0 0 1 0 0 5 0 0 0 0 2 0 0 19 0 1568.8675 P53350;B2R841;Q58A51;I3L387 P53350 20 38 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 6.9318E-06 89.805 3 2 1.1692 1.106 4.7251 4 Median 0.98206 1.106 0.023901 2 0 Median 1.4229 1.1407 7.5793 2 0 Median 175880000 86434000 89442000 151860000 77007000 74853000 24015000 9426200 14589000 527 1604 540 1383;1384;1385;1386;1387 2176;2177;2178;2179;2180;2181;2182;2183;2184 2179 9 AGVQSGTNALLVVK NELETRVRLSKRRAKAGVQSGTNALLVVKH KAGVQSGTNALLVVKHRDMNEKELEAQEAR K A G V K H 2 0 1 0 0 1 0 2 0 0 2 1 0 0 0 1 1 0 0 3 0 0 14 0 1355.7773 A0A024R0H6;Q8N7H5 A0A024R0H6 339 352 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.00018126 72.006 1 1.9405 1.5561 NaN 1 Median NaN NaN NaN 0 0 Median 1.9405 1.5561 NaN 1 0 Median 7511400 2714200 4797200 0 0 0 7511400 2714200 4797200 528 46 541 1388 2185 2185 1 AGVSFSGHR ______________________________ ______________________________ M A G H R L 1 1 0 0 0 0 0 2 1 0 0 0 0 1 0 2 0 0 0 1 0 0 9 0 916.45151 Q16643;D6R9W4;D6RFI1 Q16643 2 10 DBN1 Drebrin yes no 2 0.0030467 80.438 1 1.2898 1.4935 NaN 1 Median 1.2898 1.4935 NaN 1 0 Median NaN NaN NaN 0 0 Median 57285000 25700000 31586000 57285000 25700000 31586000 0 0 0 529 1773 542 1389 2186;2187 2186 2 AGVVGPELHEQLLSAEK DPVRNQRLYVHEAVKAGVVGPELHEQLLSA VVGPELHEQLLSAEKAVTGYRDPYSGSTIS K A G E K A 2 0 0 0 0 1 3 2 1 0 3 1 0 0 1 1 0 0 0 2 0 0 17 0 1775.9418 Q15149;D3DWL0 Q15149 3552 3568 PLEC;PLEC1 Plectin yes no 2;3 2.0927E-05 54.103 1 2 2.2288 2.0513 4.9844 3 Plateau 1.8177 2.0513 NaN 1 0 Median 2.3819 1.9596 5.9768 2 0 Median 129920000 43962000 85953000 110070000 38305000 71768000 19842000 5656800 14185000 530 1754 543 1390;1391;1392 2188;2189;2190;2191;2192 2189 5 AGYKPVAIQTYPILGEK ______________________________ YKPVAIQTYPILGEKITQDTLYWNNYKTPV M A G E K I 2 0 0 0 0 1 1 2 0 2 1 2 0 0 2 0 1 0 2 1 0 0 17 1 1847.0193 Q8TED0;D6RF65 Q8TED0 2 18 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 2.632E-05 83.087 2 2 1.0738 1.0744 5.4975 4 Median 0.96166 1.1244 0.83807 2 0 Median 1.2038 1.0235 1.2573 2 0 Median 200220000 95782000 104440000 116840000 59097000 57743000 83378000 36685000 46693000 531 1936 544 1393;1394;1395;1396 2193;2194;2195;2196;2197;2198;2199 2197 7 AGYPQYVSEILEK LMDRDLLQIIFSFSKAGYPQYVSEILEKVT SKAGYPQYVSEILEKVTCERRYIPDAMNLI K A G E K V 1 0 0 0 0 1 2 1 0 1 1 1 0 0 1 1 0 0 2 1 0 0 13 0 1495.7559 E5KNY5;P42704;B4DSR0;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 315 327 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00013091 79.659 2 2 2.2766 2.5196 61.13 4 Linear 2.0843 2.2377 2.8747 2 0 Median 0.95763 0.77716 4.2833 2 0 Median 70068000 25863000 44206000 57268000 20303000 36966000 12800000 5560200 7239600 532 1207 545 1397;1398;1399;1400 2200;2201;2202;2203;2204;2205;2206 2201 7 AGYSTDESSSSSLHATR FRPPGSGRGSGGSDKAGYSTDESSSSSLHA YSTDESSSSSLHATRTYGGSYGGRGRGRRT K A G T R T 2 1 0 1 0 0 1 1 1 0 1 0 0 0 0 6 2 0 1 0 0 0 17 0 1754.7707 P51116 P51116 407 423 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2;3 7.1332E-13 120.87 4 3 1.1457 1.2426 13.444 7 Linear 1.1628 1.3153 12.589 4 0 Linear 1.1457 0.97613 0.81637 3 0 Median 100220000 47558000 52666000 82956000 39817000 43139000 17268000 7741200 9527100 533 1593 546 1401;1402;1403;1404;1405;1406;1407 2207;2208;2209;2210;2211;2212;2213;2214;2215 2208 7 AHAFAVQQK LAQEAAQKRLQAEEKAHAFAVQQKEQELQQ LQAEEKAHAFAVQQKEQELQQTLQQEQSVL K A H Q K E 3 0 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 9 0 998.52976 Q15149 Q15149 2190 2198 PLEC Plectin yes yes 2 6.6352E-12 157.99 3 1.4449 1.4887 NaN 1 Median 1.4449 1.4887 NaN 1 0 Median NaN NaN NaN 0 0 Median 25160000 9578500 15582000 25160000 9578500 15582000 0 0 0 534 1754 547 1408;1409;1410 2216;2217;2218;2219 2218 4 AHAIITLGK PPPQVRGSVMPSVIRAHAIITLGKLCLQHE MPSVIRAHAIITLGKLCLQHEDLAKKSIPA R A H G K L 2 0 0 0 0 0 0 1 1 2 1 1 0 0 0 0 1 0 0 0 0 0 9 0 922.56 P42695;G3V1A9 P42695 921 929 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.00068897 105.14 2 2 1.2577 1.1894 26.191 4 Median 0.86853 0.95851 5.1294 2 0 Median 1.8477 1.496 7.052 2 0 Median 172900000 79183000 93721000 154470000 72966000 81503000 18436000 6217400 12218000 535 1565 548 1411;1412;1413;1414 2220;2221;2222;2223 2221 4 AHEPTYFTVDCAEAGQGDVSIGIK KVKVYGPGVAKTGLKAHEPTYFTVDCAEAG DCAEAGQGDVSIGIKCAPGVVGPAEADIDF K A H I K C 3 0 0 2 1 1 2 3 1 2 0 1 0 1 1 1 2 0 1 2 0 0 24 0 2564.1853 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 786 809 FLNA Filamin-A yes no 3 0.013139 20.482 2 3.1257 2.5066 25.055 2 Median NaN NaN NaN 0 0 Median 3.1257 2.5066 25.055 2 0 Median 11334000 2439100 8894500 0 0 0 11334000 2439100 8894500 536 1504 549 1415;1416 2224;2225;2226 2226 3 AHEVGAQGGPPVAQVEQDLPISR DAGAEWAAAVLKQERAHEVGAQGGPPVAQV GPPVAQVEQDLPISRENLTDLVVDTDTLGE R A H S R E 3 1 0 1 0 3 2 3 1 1 1 0 0 0 3 1 0 0 0 3 0 0 23 0 2354.1979 Q14676;B4DYH4 Q14676 620 642 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 1.0407E-08 61.04 1 1 0.80678 0.78783 21.753 2 Median 0.61778 0.67551 NaN 1 0 Median 1.0536 0.91883 NaN 1 0 Median 38769000 24502000 14267000 35245000 22848000 12397000 3524000 1654200 1869800 537 1738 550 1417;1418 2227;2228;2229 2227 3 AHFLQLR RCVNGKKKVLNKDGKAHFLQLRKDFDQKRA KVLNKDGKAHFLQLRKDFDQKRATIQFHQP K A H L R K 1 1 0 0 0 1 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 883.50282 Q8IUF8 Q8IUF8 119 125 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2 0.03244 66.994 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8497500 8497500 0 8497500 8497500 0 0 0 0 538 1891 551 1419 2230 2230 1 AHFQNFPNGVTDFIK PTRSLSGLILKNNVKAHFQNFPNGVTDFIK AHFQNFPNGVTDFIKSECLNNIGDSSPLIR K A H I K S 1 0 2 1 0 1 0 1 1 1 0 1 0 3 1 0 1 0 0 1 0 0 15 0 1733.8526 A0A024RAM0;Q92973;B4DSC0;E7EW37 A0A024RAM0 86 100 TNPO1 Transportin-1 yes no 3 0.041721 27.133 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5248200 0 5248200 5248200 0 5248200 0 0 0 539 309 552 1420 2231 2231 1 AHGLLAEENR AEKASYAEQLSMLKKAHGLLAEENRGLGER SMLKKAHGLLAEENRGLGERANLGRQFLEV K A H N R G 2 1 1 0 0 0 2 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1108.5625 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1443 1452 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 2.8741E-08 120.12 2 2 1.031 0.99234 16.745 4 Median 0.79196 0.87792 2.1483 2 0 Median 1.3989 1.1619 7.1365 2 0 Median 117720000 64973000 52744000 98874000 56775000 42099000 18843000 8197600 10645000 540 186;1747 553 1421;1422;1423;1424 2232;2233;2234;2235;2236;2237;2238;2239 2235 8 AHINLVR NDLQPLLAWLKVMEKAHINLVRLQWDLGLG AWLKVMEKAHINLVRLQWDLGLGHLPRFFG K A H V R L 1 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 821.48717 B3KMR5;Q5JTH9;B3KY97 B3KMR5 397 403 RRP12 RRP12-like protein yes no 2 0.01026 124.32 2 2 1.1967 1.3415 14.629 4 Linear 1.1794 1.3099 3.637 2 0 Median 1.2203 1.0197 1.3237 2 0 Median 126540000 56371000 70168000 113800000 50685000 63110000 12743000 5685300 7058100 541 907 554 1425;1426;1427;1428 2240;2241;2242;2243;2244;2245 2243 6 AHIQSLFSFITGTK DVIWNSLSRSYFKDRAHIQSLFSFITGTKL RAHIQSLFSFITGTKLDSSGVAFAVVGACQ R A H T K L 1 0 0 0 0 1 0 1 1 2 1 1 0 2 0 2 2 0 0 0 0 0 14 0 1548.83 A0A024R570;A0A024R5E3;E7EN32;E7ENS2;E7EPR4;E7ET29 A0A024R570 138 151 MEN1 yes no 2 0.034215 29.936 1 1.2912 1.1316 NaN 1 Median NaN NaN NaN 0 0 Median 1.2912 1.1316 NaN 1 0 Median 1298900 685650 613260 0 0 0 1298900 685650 613260 542 171 555 1429 2246 2246 1 AHLALEEDLNSEFR RQLKAFKSVLADIKKAHLALEEDLNSEFRA KAHLALEEDLNSEFRAMDAVNKEKNTKEHK K A H F R A 2 1 1 1 0 0 3 0 1 0 3 0 0 1 0 1 0 0 0 0 0 0 14 0 1642.7951 A4LAA3;P46100;A0A096LNW1;A0A096LNL9;A0A096LNN3 A4LAA3 405 418 ATRX Transcriptional regulator ATRX yes no 2;3 6.7247E-05 66.708 3 2 0.93529 0.95597 16.794 3 Median 0.79616 0.87323 22.57 2 0 Median 1.1114 0.95597 NaN 1 0 Median 82708000 40724000 41983000 71565000 36944000 34621000 11143000 3780400 7362300 543 672 556 1430;1431;1432;1433;1434 2247;2248;2249;2250;2251;2252;2253 2248 6 AHLFDLNCK DVFSSMLKDTTSQHRAHLFDLNCKICTGQV TTSQHRAHLFDLNCKICTGQVPSAEDEPAP R A H C K I 1 0 1 1 1 0 0 0 1 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1116.5386 Q9BTC0 Q9BTC0 846 854 DIDO1 Death-inducer obliterator 1 yes yes 2 0.012937 64.42 2 1.8361 1.5312 NaN 1 Median NaN NaN NaN 0 0 Median 1.8361 1.5312 NaN 1 0 Median 2877800 615970 2261800 0 0 0 2877800 615970 2261800 544 2002 557 1435;1436 2254;2255 2255 2 AHLGLEEQLR FSWEDVDRLLDPANRAHLGLEEQLRELLDM DPANRAHLGLEEQLRELLDMLDLTCAMKSS R A H L R E 1 1 0 0 0 1 2 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 10 0 1164.6251 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41;B7Z926;Q59G93;Q9Y4Q3;B4DZC2 A0A024R4W4 710 719 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 3 0.00060148 56.432 1 0.73327 0.72228 NaN 1 Median 0.73327 0.72228 NaN 1 0 Median NaN NaN NaN 0 0 Median 13173000 7057600 6115900 13173000 7057600 6115900 0 0 0 545 162 558 1437 2256 2256 1 AHLGTALK SHRRDQKWHDKQYKKAHLGTALKANPFGGA HDKQYKKAHLGTALKANPFGGASHAKGIVL K A H L K A 2 0 0 0 0 0 0 1 1 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 809.47594 A8K517;P62266;D6RD47;D6RDJ2;D6RIX0;D6R9I7 A8K517 30 37 RPS23 40S ribosomal protein S23 yes no 2 8.9864E-14 153.73 4 2 1.0968 1.1171 39.178 2 Median 0.71483 0.84682 NaN 1 0 Median 1.6829 1.4737 NaN 1 0 Median 4706200000 2120300000 2585900000 3972300000 1710100000 2262300000 733880000 410270000 323610000 546 744 559 1438;1439;1440;1441;1442;1443 2257;2258;2259;2260;2261;2262;2263;2264;2265;2266 2263 10 AHLMEIQVNGGTVAEK IAHTQMRLLPLRQKKAHLMEIQVNGGTVAE HLMEIQVNGGTVAEKLDWARERLEQQVPVN K A H E K L 2 0 1 0 0 1 2 2 1 1 1 1 1 0 0 0 1 0 0 2 0 0 16 0 1695.8614 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;H7C3M2;B5MCW2;B3KS36 P39023 178 193 RPL3;rpl3 60S ribosomal protein L3 no no 2;3 7.3314E-62 184.11 6 4 1.4759 1.7972 38.733 6 Linear 1.4231 1.6931 7.7848 3 0 Plateau 1.0754 0.87358 15.49 3 0 Median 1536600000 733550000 803030000 1518400000 725740000 792700000 18135000 7803500 10332000 547 1554;936 560;561 1444;1445;1446;1447;1448;1449;1450;1451;1452;1453 2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277;2278;2279;2280;2281 2270 763 14 AHLTNQYMQR KPLYVALAQRKEERKAHLTNQYMQRVAGMR KEERKAHLTNQYMQRVAGMRALPANAILNQ K A H Q R V 1 1 1 0 0 2 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 0 10 0 1260.6033 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q53GL4;H0YEU6;Q147Y3;Q3B867;Q59GZ7 B1ANR0 376 385 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2;3 0.00017727 82.645 2 2.7877 2.8197 2.0086 2 Median 2.7877 2.8197 2.0086 2 0 Median NaN NaN NaN 0 0 Median 29501000 7586700 21915000 29501000 7586700 21915000 0 0 0 548 818 562 1454;1455 2282;2283 2282 651 2 AHLWQK GKIPTLKISLIQIFRAHLWQKIHESIVMDL KISLIQIFRAHLWQKIHESIVMDLCQVFDQ R A H Q K I 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 6 0 781.42351 Q6P2Q9;B4DK16;Q6JH02;Q6JH03;I3L3Z8 Q6P2Q9 1579 1584 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.029222 82.141 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 549 1854 563 1456 2284 2284 1 AHNNELEPTPGNTLR TIKKAKQDVIEVIEKAHNNELEPTPGNTLR AHNNELEPTPGNTLRQTFENQVNRILNDAR K A H L R Q 1 1 3 0 0 0 2 1 1 0 2 0 0 0 2 0 2 0 0 0 0 0 15 0 1661.8121 P24928;A0A087WWE2 P24928 720 734 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 3 0.030458 29.129 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6420600 0 6420600 6420600 0 6420600 0 0 0 550 1514 564 1457 2285 2285 1 AHPVAVASK LFDFKQGILCYPAPKAHPVAVASKKRKKPS CYPAPKAHPVAVASKKRKKPSRPAKTRKRQ K A H S K K 3 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 2 0 0 9 0 878.4974 A0A0A0MS90;A8K654;B4DI41;Q9UIS9;B4DUR3 A0A0A0MS90 76 84 MBD1 Methyl-CpG-binding domain protein 1 yes no 2 0.016787 53.554 1 0.57725 0.63838 NaN 1 Median 0.57725 0.63838 NaN 1 0 Median NaN NaN NaN 0 0 Median 45142000 28420000 16723000 45142000 28420000 16723000 0 0 0 551 477 565 1458 2286 2286 1 AHQANQLYPFAISLIESVR LKWLGFRVPLAIVNKAHQANQLYPFAISLI NQLYPFAISLIESVRTYERTCEKVEERNTI K A H V R T 3 1 1 0 0 2 1 0 1 2 2 0 0 1 1 2 0 0 1 1 0 0 19 0 2156.1378 Q14204 Q14204 768 786 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 6.9705E-06 60.334 1 1.3817 1.4347 NaN 1 Median 1.3817 1.4347 NaN 1 0 Median NaN NaN NaN 0 0 Median 5585100 2371100 3214000 5585100 2371100 3214000 0 0 0 552 1729 566 1459 2287;2288 2288 2 AHQILVLQEGK RTVLVIAHRLQTVQRAHQILVLQEGKLQKL TVQRAHQILVLQEGKLQKLAQLQ_______ R A H G K L 1 0 0 0 0 2 1 1 1 1 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1234.7034 Q9UMW6;Q9UQ60;Q5JNW1;A0A0G2JLV0;A0A087WYD6;X5CMH5;Q59H06;Q03519;Q96P38 Q9UMW6 354 364 TAP2-G;TAP2 Antigen peptide transporter 2 yes no 2 0.006555 54.198 1 1.0663 1.0882 NaN 1 Median 1.0663 1.0882 NaN 1 0 Median NaN NaN NaN 0 0 Median 17186000 7720100 9466300 17186000 7720100 9466300 0 0 0 553 433 567 1460 2289 2289 1 AHQVVEDGYEFFAK VAKFLHKHDLDLICRAHQVVEDGYEFFAKR RAHQVVEDGYEFFAKRQLVTLFSAPNYCGE R A H A K R 2 0 0 1 0 1 2 1 1 0 0 1 0 2 0 0 0 0 1 2 0 0 14 0 1638.7678 P62136;A0A140VJS9;B3KXM2;E9PMD7;C4TNW6;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;B4DNE3;V9HW04;P62140;B4DJ75;B7ZB67 P62136 247 260 PPP1CA;PPP1CC;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2;3 4.3144E-57 189.33 4 4 1.7245 1.6774 16.112 8 Median 1.319 1.4774 2.485 4 0 Median 2.3025 1.9366 5.0717 4 0 Median 535730000 203340000 332400000 315050000 136450000 178600000 220680000 66886000 153790000 554 1632;343;1633 568 1461;1462;1463;1464;1465;1466;1467;1468 2290;2291;2292;2293;2294;2295;2296;2297;2298;2299;2300;2301;2302;2303;2304;2305;2306;2307;2308;2309;2310 2291 21 AHSGAQGLLAAQK ______________________________ RKAHSGAQGLLAAQKARGLFKDFFPETGTK K A H Q K A 4 0 0 0 0 2 0 2 1 0 2 1 0 0 0 1 0 0 0 0 0 0 13 0 1250.6731 H0YHS6;Q9Y2Z4 H0YHS6 5 17 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 2 2.4426E-13 127.51 1 2.4719 2.5971 NaN 1 Median 2.4719 2.5971 NaN 1 0 Median NaN NaN NaN 0 0 Median 19647000 5685900 13961000 19647000 5685900 13961000 0 0 0 555 1293 569 1469 2311 2311 1 AHSIQIMK VTQCYRDMGARHRARAHSIQIMKVEEIAAS GARHRARAHSIQIMKVEEIAASKCRRPHKP R A H M K V 1 0 0 0 0 1 0 0 1 2 0 1 1 0 0 1 0 0 0 0 0 0 8 0 926.50077 M0R117;B4DM74;Q02543;M0R3D6;M0R1A7;B4DM94;B4DUV3;B2R4C0;Q53HD3;M0R0P7;Q76N54 M0R117 121 128 RPL18A 60S ribosomal protein L18a yes no 1;2 2.2189E-14 169.26 5 5 1.2555 1.0003 46.156 7 Median 0.96337 1.0705 65.016 4 0 Median 1.2555 1.0003 4.2792 3 0 Median 854340000 298550000 555790000 802040000 257850000 544190000 52295000 40701000 11593000 556 1003 570;571 1470;1471;1472;1473;1474;1475;1476;1477;1478;1479 2312;2313;2314;2315;2316;2317;2318;2319;2320;2321;2322;2323 2318 794 11 AHSVYNFEK FQMVYNEFQKFVQRKAHSVYNFEKPVVMKA KFVQRKAHSVYNFEKPVVMKAFEHLQQLEL K A H E K P 1 0 1 0 0 0 1 0 1 0 0 1 0 1 0 1 0 0 1 1 0 0 9 0 1093.5193 A8K7H4;O43929;Q96B14;Q53TH5;B7Z632;CON__Q2YDI2 A8K7H4 361 369 ORC4;ORC4L Origin recognition complex subunit 4 yes no 2 1.0923E-05 109.44 1 2 1.4217 1.1226 2.9573 2 Median NaN NaN NaN 0 0 Median 1.4217 1.1226 2.9573 2 0 Median 5245500 2337700 2907800 0 0 0 5245500 2337700 2907800 + 557 772 572 1480;1481;1482 2324;2325;2326 2324 3 AHVEGDGVVEGIIR QTLYVNTAADSFEFKAHVEGDGVVEGIIRY KAHVEGDGVVEGIIRYHPFLYDRETYPDDP K A H I R Y 1 1 0 1 0 0 2 3 1 2 0 0 0 0 0 0 0 0 0 3 0 0 14 0 1449.7576 A6NHR9 A6NHR9 415 428 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.050672 30.905 1 1 1.2026 1.1385 13.694 2 Median 1.1956 1.2543 NaN 1 0 Median 1.2096 1.0334 NaN 1 0 Median 14869000 6194700 8674200 12096000 5162100 6933600 2773300 1032600 1740700 558 684 573 1483;1484 2327;2328 2328 1 AHVTHPELK KYERFIRPMGLRFKKAHVTHPELKATFCLP GLRFKKAHVTHPELKATFCLPILGVKKNPS K A H L K A 1 0 0 0 0 0 1 0 2 0 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1030.556 Q5J7U2;O95478 Q5J7U2 181 189 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2;3 0.0035715 71.379 1 1 0.99691 0.91906 12.512 2 Median 0.93998 1.0041 NaN 1 0 Median 1.0573 0.84124 NaN 1 0 Median 39742000 20921000 18821000 36778000 19575000 17203000 2964400 1346700 1617700 559 1427 574 1485;1486 2329;2330;2331 2329 3 AIACVVTACSAELEK GLAGRTWAGKEELLKAIACVVTACSAELEK AIACVVTACSAELEKSVPNQPSTNEILQAV K A I E K S 4 0 0 0 2 0 2 0 0 1 1 1 0 0 0 1 1 0 0 2 0 0 15 0 1620.7851 B3KXF2;J3KN16;Q5VYK3;F6XAQ5 B3KXF2 1060 1074 KIAA0368;ECM29 Proteasome-associated protein ECM29 homolog yes no 3 0.01974 24.935 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4618200 4618200 0 0 0 0 4618200 4618200 0 560 952 575 1487 2332 2332 1 AIADTGANVVVTGGK NFSKGEENLMDAQVKAIADTGANVVVTGGK AIADTGANVVVTGGKVADMALHYANKYNIM K A I G K V 3 0 1 1 0 0 0 3 0 1 0 1 0 0 0 0 2 0 0 3 0 0 15 0 1371.7358 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 231 245 CCT8 T-complex protein 1 subunit theta yes no 2 4.776E-08 107.17 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 561 1592 576 1488 2333 2333 1 AIAFLQQPR IKFEGAIYRKDIGFRAIAFLQQPRSLTYKE KDIGFRAIAFLQQPRSLTYKESGVDIAAGN R A I P R S 2 1 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 9 0 1042.5924 Q3B7A7;Q59HH3;P22102;Q15374;O14660 Q3B7A7 425 433 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.00086605 93.262 2 2.4563 2.5876 8.9286 2 Median 2.4563 2.5876 8.9286 2 0 Median NaN NaN NaN 0 0 Median 67060000 20939000 46121000 67060000 20939000 46121000 0 0 0 562 1507 577 1489;1490 2334;2335;2336 2334 3 AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFK SPEVVRKMGDKVEARAIAIAAGVPVVPGTD AHEFSNTYGFPIIFKAAYGGGGRGMRVVHS R A I F K A 6 0 1 1 0 0 2 3 2 5 1 1 0 3 4 2 3 0 1 3 0 0 38 0 3950.0618 A0A024R5C5;P11498;E9PRE7 A0A024R5C5 157 194 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 4 0.00090093 24.297 1 1.6623 1.634 NaN 1 Median 1.6623 1.634 NaN 1 0 Median NaN NaN NaN 0 0 Median 23505000 7774600 15730000 23505000 7774600 15730000 0 0 0 563 176 578 1491 2337 2337 1 AIANECQANFISIK LFYGPPGCGKTLLAKAIANECQANFISIKG KAIANECQANFISIKGPELLTMWFGESEAN K A I I K G 3 0 2 0 1 1 1 0 0 3 0 1 0 1 0 1 0 0 0 0 0 0 14 0 1577.7872 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 V9HW80 530 543 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 2 0.0029309 63.944 2 1 1.0308 0.87458 NaN 1 Median NaN NaN NaN 0 0 Median 1.0308 0.87458 NaN 1 0 Median 6836100 667040 6169000 5353000 0 5353000 1483100 667040 816020 564 1613 579 1492;1493;1494 2338;2339;2340 2338 3 AIAVLTSGGDAQGMNAAVR THEEHHAAKTLGIGKAIAVLTSGGDAQGMN LTSGGDAQGMNAAVRAVVRVGIFTGARVFF K A I V R A 5 1 1 1 0 1 0 3 0 1 1 0 1 0 0 1 1 0 0 2 0 0 19 0 1800.9152 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;A0A0S2Z4A8;F8VP00;F8VX13;F8VNX2;F8VZQ1;F8W1J8;F8VSF7;F8VW30;F8VSL1;F8VUB8;F8VYK8;F8VTQ3;F8VZI0;F8VVE3 A0A024R0Y5 17 35 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 2.3223E-10 100.38 3 3.1524 3.3054 NaN 1 Median 3.1524 3.3054 NaN 1 0 Median NaN NaN NaN 0 0 Median 22628000 4088200 18539000 22628000 4088200 18539000 0 0 0 565 61 580 1495;1496;1497 2341;2342;2343;2344;2345;2346 2346 30 6 AIAYLFPSGLFEK ______________________________ DRAIAYLFPSGLFEKRARPVMKHPEQIFPR R A I E K R 2 0 0 0 0 0 1 1 0 1 2 1 0 2 1 1 0 0 1 0 0 0 13 0 1454.781 Q86WV4;P82933 Q86WV4 13 25 MRPS9 28S ribosomal protein S9, mitochondrial yes no 2 0.00066058 81.865 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 566 1670 581 1498 2347 2347 1 AIAYTWFNLQAR DEFHPFIEALLPHVRAIAYTWFNLQARKRK HVRAIAYTWFNLQARKRKYFKKHEKRMSKD R A I A R K 3 1 1 0 0 1 0 0 0 1 1 0 0 1 0 0 1 1 1 0 0 0 12 0 1452.7514 A0A1B0GW37;U3KQE8;Q5VW28;A0A1B0GWJ4;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWI9;Q5VW27;Q5VW30;Q5VW26;O00712;B4DS74;U3KPY9;A0A087WXP2;Q5W0Y9;A0A0S2Z4H3;A0A1B0GVN4;A0A1B0GTC1 A0A1B0GW37 17 28 NFIB Nuclear factor 1;Nuclear factor 1 B-type yes no 2 0.028578 56.563 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 469500 469500 0 0 0 0 469500 469500 0 567 473 582 1499;1500 2348;2349 2349 2 AIEAAPQEPEQK TLAKALLQTHPEAQRAIEAAPQEPEQKRSR AQRAIEAAPQEPEQKRSRQDPGEAPQRPPR R A I Q K R 3 0 0 0 0 2 3 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 12 0 1309.6514 I3L1Y9;Q96CP2 I3L1Y9 90 101 FLYWCH2 FLYWCH family member 2 yes no 2 3.335E-05 98.249 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8829800 0 8829800 8829800 0 8829800 0 0 0 568 1320 583 1501;1502 2350;2351 2351 2 AIEALSGK GYAFVDCPDESWALKAIEALSGKIELHGKP DESWALKAIEALSGKIELHGKPIEVEHSVP K A I G K I 2 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 0 787.44397 O00425;F8WD15 O00425 53 60 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 2 0.01581 68.214 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5441300 0 5441300 5441300 0 5441300 0 0 0 569 1364 584 1503 2352 2352 1 AIEDGNLEEMEEEVR DVDYSDALTEKQWLRAIEDGNLEEMEEEVR AIEDGNLEEMEEEVRLKKRKRRRNVDKDPA R A I V R L 1 1 1 1 0 0 6 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 15 0 1761.7727 P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8;A0A0U1RRG6;A0A0U1RQU0;F6XE55;A0A0U1RQW7;A0A0U1RRN2;A0A0U1RR83;A0A0U1RQX3;A0A0U1RR26;B4DNT1;B1ALF6;A0A0U1RRJ4 P51531 1328 1342 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 4.5517E-05 90.614 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3453800 3453800 0 3453800 3453800 0 0 0 0 570 1595 585 1504;1505 2353;2354 2354 1378 2 AIEEGTLEEIEEEVR EVDYSDSLTEKQWLKAIEEGTLEEIEEEVR AIEEGTLEEIEEEVRQKKSSRKRKRDSDAG K A I V R Q 1 1 0 0 0 0 7 1 0 2 1 0 0 0 0 0 1 0 0 1 0 0 15 0 1744.8367 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;B4E0F1;B4DSI8;B3KNW7;K7EP28 A7E2E1 1391 1405 SMARCA4 Transcription activator BRG1 yes no 2 3.4825E-10 116.24 2 1 0.82821 0.96157 33.076 3 Median 0.80918 0.9149 7.0371 2 0 Median 1.9644 1.6119 NaN 1 0 Median 131210000 73649000 57564000 119000000 69966000 49033000 12214000 3683200 8530900 571 695 586 1506;1507;1508 2355;2356;2357;2358;2359 2356 5 AIEEIAGVGVPELINSPK ALLCIYLEHTESILKAIEEIAGVGVPELIN EIAGVGVPELINSPKDASSSTFPTLTRHTF K A I P K D 2 0 1 0 0 0 3 2 0 3 1 1 0 0 2 1 0 0 0 2 0 0 18 0 1835.004 A0A024R2G2;Q9BXW9;H7BZJ7 A0A024R2G2 1199 1216 FANCD2 Fanconi anemia group D2 protein yes no 2 0.0054614 33.204 1 0.78791 0.78545 NaN 1 Median 0.78791 0.78545 NaN 1 0 Median NaN NaN NaN 0 0 Median 7906700 4117100 3789600 7906700 4117100 3789600 0 0 0 572 111 587 1509 2360 2360 1 AIEEQMVAAK IIRKVVKLFNEVQEKAIEEQMVAAKDVVME EVQEKAIEEQMVAAKDVVMEPTMKTLSDDL K A I A K D 3 0 0 0 0 1 2 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 10 0 1088.5536 Q9H0A0;A0A087WV29 Q9H0A0 913 922 NAT10 N-acetyltransferase 10 yes no 2 9.3431E-05 94.302 1 2 1.0616 1.0846 NaN 1 Median 1.0616 1.0846 NaN 1 0 Median NaN NaN NaN 0 0 Median 21718000 5491000 16227000 10479000 5491000 4987500 11240000 0 11240000 573 2023 588;589 1510;1511;1512 2361;2362;2363 2361 1856 3 AIEIVESDVK AVSGDVRKALDVCRRAIEIVESDVKSQTIL DVCRRAIEIVESDVKSQTILKPLSECKSPS R A I V K S 1 0 0 1 0 0 2 0 0 2 0 1 0 0 0 1 0 0 0 2 0 0 10 0 1101.5918 B2R935;A0A024R1S2;Q99741 B2R935 397 406 CDC6 Cell division control protein 6 homolog yes no 2 0.0035438 66.692 2 1.3827 1.3954 NaN 1 Median 1.3827 1.3954 NaN 1 0 Median NaN NaN NaN 0 0 Median 12946000 8069800 4876000 12946000 8069800 4876000 0 0 0 574 85 590 1513;1514 2364;2365 2365 2 AIELLQEFSDQHPENAAEIK LIQAAQLCREKQHTKAIELLQEFSDQHPEN QEFSDQHPENAAEIKLTMAQLKISQGNISK K A I I K L 3 0 1 1 0 2 4 0 1 2 2 1 0 1 1 1 0 0 0 0 0 0 20 0 2281.1226 V9HWK0;O76094;Q86X80;A0PJJ5;Q0D2M6;Q71V07;D6RDY6;O15302 V9HWK0 357 376 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 3 3.5923E-07 76.768 1 2 1.2729 1.0186 5.8261 3 Median 1.0063 1.0045 NaN 1 0 Median 1.3211 1.0672 6.5876 2 0 Median 31238000 12907000 18332000 14776000 5360900 9414600 16463000 7545700 8917000 575 1416 591 1515;1516;1517 2366;2367;2368;2369;2370;2371 2367 6 AIEPPPLDAVIEAEHTLR IKLLRLGGIGQFLAKAIEPPPLDAVIEAEH PPPLDAVIEAEHTLRELDALDANDELTPLG K A I L R E 3 1 0 1 0 0 3 0 1 2 2 0 0 0 3 0 1 0 0 1 0 0 18 0 1970.0473 Q08211;B3KU66 Q08211 820 837 DHX9 ATP-dependent RNA helicase A yes no 3 5.619E-09 98.165 2 2 1.416 1.4298 7.097 4 Median 1.2936 1.5201 0.1766 2 0 Median 1.5478 1.3443 0.24098 2 0 Median 1153200000 488090000 665150000 875970000 379040000 496930000 277270000 109050000 168230000 576 1691 592 1518;1519;1520;1521 2372;2373;2374;2375;2376;2377;2378;2379 2373 8 AIETAPLSFR LTKVPQRALELDKNRAIETAPLSFRTLVGL LDKNRAIETAPLSFRTLVGLLGIEAALESL R A I F R T 2 1 0 0 0 0 1 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 10 0 1103.5975 Q6IPU0;X6R9C8;Q7Z672 Q6IPU0 254 263 CENPP;DKFZp779J2459 Centromere protein P yes no 2 0.0035568 76.1 2 0.77144 0.77371 NaN 1 Median 0.77144 0.77371 NaN 1 0 Median NaN NaN NaN 0 0 Median 23615000 15055000 8559400 23615000 15055000 8559400 0 0 0 577 1845 593 1522;1523 2380;2381 2380 2 AIFAGYK ______________________________ MSGRLWSKAIFAGYKRGLRNQREHTALLKI K A I Y K R 2 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 768.41703 P18077;F8WBS5;F8WB72;C9K025 P18077 9 15 RPL35A 60S ribosomal protein L35a yes no 2 0.03153 66.994 2 0.89269 1.0545 3.224 2 Median 0.89269 1.0545 3.224 2 0 Median NaN NaN NaN 0 0 Median 959300000 496300000 463000000 959300000 496300000 463000000 0 0 0 578 1497 594 1524;1525 2382;2383;2384 2384 3 AIFAVLTSVLTK ISDSNDQESANCDAKAIFAVLTSVLTKDDW DAKAIFAVLTSVLTKDDWWNLLLKAIYSLC K A I T K D 2 0 0 0 0 0 0 0 0 1 2 1 0 1 0 1 2 0 0 2 0 0 12 0 1261.7646 Q9Y5Q9 Q9Y5Q9 611 622 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 7.557E-09 123.63 2 1.0067 1.0112 14.879 2 Median 1.0067 1.0112 14.879 2 0 Median NaN NaN NaN 0 0 Median 20482000 10266000 10216000 20482000 10266000 10216000 0 0 0 579 2150 595 1526;1527 2385;2386;2387 2387 3 AIFDQLMTFGIEPFK VLQIDDVTIKISALKAIFDQLMTFGIEPFK AIFDQLMTFGIEPFKTKKIKTLHCEGTEIN K A I F K T 1 0 0 1 0 1 1 1 0 2 1 1 1 3 1 0 1 0 0 0 0 0 15 0 1755.8906 H0Y9Z8;Q9BPX3 Q9BPX3 644 658 NCAPG Condensin complex subunit 3 no no 2 0.00013897 72.652 3 1.142 1.2844 0.26327 2 Median 1.142 1.2844 0.26327 2 0 Median NaN NaN NaN 0 0 Median 143710000 84260000 59450000 143710000 84260000 59450000 0 0 0 580 1995;1289 596 1528;1529;1530 2388;2389;2390 2389 984 3 AIFEIVLNR ADMVYVTQSAGRLMRAIFEIVLNRGWAQLT AGRLMRAIFEIVLNRGWAQLTDKTLNLCKM R A I N R G 1 1 1 0 0 0 1 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1073.6233 O75643;A4FU77 O75643 1094 1102 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0019632 83.265 2 2 0.84453 0.73601 19.537 2 Median NaN NaN NaN 0 0 Median 0.84453 0.73601 19.537 2 0 Median 14691000 1317400 13374000 12412000 0 12412000 2279400 1317400 962020 581 1411 597 1531;1532;1533;1534 2391;2392;2393;2394;2395;2396 2392 6 AIFENTLSTYPK FAQLEFQLGDAERAKAIFENTLSTYPKRTD RAKAIFENTLSTYPKRTDVWSVYIDMTIKH K A I P K R 1 0 1 0 0 0 1 0 0 1 1 1 0 1 1 1 2 0 1 0 0 0 12 0 1382.7082 Q14690 Q14690 1782 1793 PDCD11 Protein RRP5 homolog yes yes 2 1.6063E-22 152.28 2 1.0437 1.1612 4.1962 2 Median 1.0437 1.1612 4.1962 2 0 Median NaN NaN NaN 0 0 Median 147920000 70963000 76959000 147920000 70963000 76959000 0 0 0 582 1741 598 1535;1536 2397;2398;2399;2400;2401 2401 5 AIFLADGNVFTTGFSR VAEKEKAHEGARPMRAIFLADGNVFTTGFS IFLADGNVFTTGFSRMSERQLALWNPKNMQ R A I S R M 2 1 1 1 0 0 0 2 0 1 1 0 0 3 0 1 2 0 0 1 0 0 16 0 1714.8679 Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B4DMH3;B4E3S0;B7Z9V0 Q53G58 224 239 CORO1C Coronin;Coronin-1C yes no 2 3.106E-09 110.92 2 6.5139 5.5565 8.2333 2 Median NaN NaN NaN 0 0 Median 6.5139 5.5565 8.2333 2 0 Median 52925000 6683700 46242000 0 0 0 52925000 6683700 46242000 583 340 599 1537;1538 2402;2403;2404;2405;2406;2407 2405 6 AIFQTIQNR IDDEDNPVDEYQIFKAIFQTIQNRNPVWYQ EYQIFKAIFQTIQNRNPVWYQALTHGLNEE K A I N R N 1 1 1 0 0 2 0 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 9 0 1089.5931 O95373;B3KQG6;B3KNG9 O95373 964 972 IPO7 Importin-7 yes no 2 0.00014497 108.46 2 1.9065 2.0059 1.6565 2 Median 1.9065 2.0059 1.6565 2 0 Median NaN NaN NaN 0 0 Median 37761000 15072000 22689000 37761000 15072000 22689000 0 0 0 584 1424 600 1539;1540 2408;2409 2409 2 AIFTGYYGK NGRWMLTLAKNMEVRAIFTGYYGKGKPVPT KNMEVRAIFTGYYGKGKPVPTQGSRKGGAL R A I G K G 1 0 0 0 0 0 0 2 0 1 0 1 0 1 0 0 1 0 2 0 0 0 9 0 1018.5124 B4DFN6;B4DI06;A0A024R1T5;P09543 B4DFN6 157 165 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 2 0.026458 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 585 88 601 1541 2410 2410 1 AIFTTGQGASAVGLTAYVQR AKSQFLKYIEKVSSRAIFTTGQGASAVGLT GQGASAVGLTAYVQRHPVSREWTLEAGALV R A I Q R H 4 1 0 0 0 2 0 3 0 1 1 0 0 1 0 1 3 0 1 2 0 0 20 0 2010.0534 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6;Q9BWF4 B4DSV5 413 432 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 2.5826E-19 117.92 2 2 1.3585 1.2663 54.45 2 Median 1.8856 1.861 NaN 1 0 Median 0.97874 0.86165 NaN 1 0 Median 28641000 6424300 22216000 23242000 4614600 18627000 5398600 1809600 3588900 586 955 602 1542;1543;1544;1545 2411;2412;2413;2414;2415 2411 5 AIGIGAYLVR LAYNEIITISLVTCRAIGIGAYLVRLGQRT LVTCRAIGIGAYLVRLGQRTIQVENSHLIL R A I V R L 2 1 0 0 0 0 0 2 0 2 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1031.6128 A0A024R0Y2;B2ZZ90;Q13085;Q7Z5W8;Q59FY4;A2NX49;O00763;B4DYJ7;Q4G170;F8W8T8;H0YGH5;Q59GJ9 A0A024R0Y2 1746 1755 hCG_30204;ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 2 0.015683 48.561 2 1.1522 1.1632 NaN 1 Median 1.1522 1.1632 NaN 1 0 Median NaN NaN NaN 0 0 Median 10233000 3849800 6382800 10233000 3849800 6382800 0 0 0 587 60 603 1546;1547 2416;2417 2417 2 AIGNTELENK RRLEELLRQMCQAAKAIGNTELENKFAEGI CQAAKAIGNTELENKFAEGITKIKRDIVFA K A I N K F 1 0 2 0 0 0 2 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1087.551 P42285;A8K6I4;B4E3M6;H0YAC4 P42285 1013 1022 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.00029646 76.827 1 1 0.31581 0.25218 NaN 1 Median NaN NaN NaN 0 0 Median 0.31581 0.25218 NaN 1 0 Median 9209700 6166100 3043600 0 0 0 9209700 6166100 3043600 588 1563 604 1548;1549 2418;2419 2418 2 AIGPHDVLATLLNNLK AIRRATVNTFGYIAKAIGPHDVLATLLNNL IGPHDVLATLLNNLKVQERQNRVCTTVAIA K A I L K V 2 0 2 1 0 0 0 1 1 1 4 1 0 0 1 0 1 0 0 1 0 0 16 0 1687.9621 O75533;H7C341 O75533 1087 1102 SF3B1 Splicing factor 3B subunit 1 yes no 3 5.1767E-05 73.022 3 1.171 1.1595 NaN 1 Median 1.171 1.1595 NaN 1 0 Median NaN NaN NaN 0 0 Median 12011000 5241100 6769600 12011000 5241100 6769600 0 0 0 589 1408 605 1550;1551;1552 2420;2421;2422;2423;2424 2424 5 AIGSASEGAQSSLQEVYHK FHMDPSGTFVQCDARAIGSASEGAQSSLQE ASEGAQSSLQEVYHKSMTLKEAIKSSLIIL R A I H K S 3 0 0 0 0 2 2 2 1 1 1 1 0 0 0 4 0 0 1 1 0 0 19 0 1960.949 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 169 187 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 2;3 2.496E-51 164.53 5 2 1.8529 2.1144 29.63 4 Linear 1.802 1.9901 7.6179 2 0 Median 1.4884 1.1985 1.9855 2 0 Median 146630000 47499000 99129000 129220000 40030000 89192000 17406000 7468600 9937900 590 595 606 1553;1554;1555;1556;1557;1558;1559 2425;2426;2427;2428;2429;2430;2431;2432;2433;2434;2435;2436;2437 2429 13 AIGTDEDLAHSSIR SACTSASLEPSYVLRAIGTDEDLAHSSIRF RAIGTDEDLAHSSIRFGIGRFTTEEEVDYT R A I I R F 2 1 0 2 0 0 1 1 1 2 1 0 0 0 0 2 1 0 0 0 0 0 14 0 1483.7267 H7C0I5;H0YGN5;B4DNL7;Q5QP19;Q53FP3;B2R5S3;Q9Y697 H7C0I5 33 46 NFS1 Cysteine desulfurase, mitochondrial yes no 2 0.0078008 53.569 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3078300 0 3078300 3078300 0 3078300 0 0 0 591 834 607 1560 2438 2438 1 AIGVLTSGGDAQGMNAAVR GSLRKFLEHLSGAGKAIGVLTSGGDAQGMN LTSGGDAQGMNAAVRAVVRMGIYVGAKVYF K A I V R A 4 1 1 1 0 1 0 4 0 1 1 0 1 0 0 1 1 0 0 2 0 0 19 0 1786.8996 P17858;Q01813 Q01813 26 44 PFKL;PFKP ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type no no 2 1.173E-23 136.7 2 2.6577 2.9032 NaN 1 Median 2.6577 2.9032 NaN 1 0 Median NaN NaN NaN 0 0 Median 37747000 10486000 27261000 37747000 10486000 27261000 0 0 0 592 1677;1495 608 1561;1562 2439;2440;2441 2440 1249 3 AIHTAPVATMAFDPTSTLLATGGCDGAVR AQWAWQEGSVTRLWKAIHTAPVATMAFDPT TSTLLATGGCDGAVRVWDIVRHYGTHHFRG K A I V R V 6 1 0 2 1 0 0 3 1 1 2 0 1 1 2 1 5 0 0 2 0 0 29 0 2900.4161 Q12788;J3KNP2 Q12788 106 134 TBL3 Transducin beta-like protein 3 yes no 3 3.6699E-16 62.683 2 2 0.96185 0.89212 25.045 4 Median 0.79532 0.84084 1.832 2 0 Median 1.3544 1.1528 29.712 2 0 Median 70929000 38940000 31989000 62005000 35750000 26255000 8924200 3189600 5734600 593 1698 609;610 1563;1564;1565;1566 2442;2443;2444;2445;2446 2443 1531 5 AIHVLDVEQGQLER FSEDGQKLITVSKDKAIHVLDVEQGQLERR KAIHVLDVEQGQLERRVSKAHGAPINSLLL K A I E R R 1 1 0 1 0 2 2 1 1 1 2 0 0 0 0 0 0 0 0 2 0 0 14 0 1605.8475 Q9H6Y2 Q9H6Y2 107 120 WDR55 WD repeat-containing protein 55 yes yes 3 0.00010937 61.423 1 2 0.90258 0.74882 24.044 3 Median 1.0246 1.0628 NaN 1 0 Median 0.84221 0.7086 7.8068 2 0 Median 33465000 15870000 17595000 22693000 10074000 12619000 10772000 5796400 4976000 594 2039 611 1567;1568;1569 2447;2448;2449;2450;2451;2452 2447 6 AIIDEFEQK SVVGKLRRGAKPEGKAIIDEFEQKLRACHT AKPEGKAIIDEFEQKLRACHTRGLDGIKEL K A I Q K L 1 0 0 1 0 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 9 0 1091.5499 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1280 1288 NCAPD2 Condensin complex subunit 1 yes no 2 1.5452E-05 122.13 2 2 1.2137 1.2024 13.392 4 Median 0.9172 1.0761 0.54858 2 0 Median 1.6234 1.3559 1.8453 2 0 Median 779470000 382210000 397250000 686060000 345580000 340480000 93412000 36636000 56775000 595 908 612 1570;1571;1572;1573 2453;2454;2455;2456;2457;2458;2459 2454 7 AIIEADPLTTTR ERSGRPSEVDNDQLRAIIEADPLTTTREVA QLRAIIEADPLTTTREVAEELNVNHSTVVR R A I T R E 2 1 0 1 0 0 1 0 0 2 1 0 0 0 1 0 3 0 0 0 0 0 12 0 1299.7034 B9ZVV8;B4DND2;Q96H41;Q53H47 B9ZVV8 183 194 SETMAR Histone-lysine N-methyltransferase SETMAR;Histone-lysine N-methyltransferase;Transposon Hsmar1 transposase yes no 2 0.014555 52.79 1 1 2.1144 1.8414 NaN 1 Median NaN NaN NaN 0 0 Median 2.1144 1.8414 NaN 1 0 Median 6483200 5603100 880070 4972900 4972900 0 1510300 630200 880070 596 1011 613 1574;1575 2460;2461;2462 2461 3 AIIIFVPVPQLK NITAAKEIEVGGGRKAIIIFVPVPQLKSFQ GRKAIIIFVPVPQLKSFQKIQVRLVRELEK K A I L K S 1 0 0 0 0 1 0 0 0 3 1 1 0 1 2 0 0 0 0 2 0 0 12 0 1336.8482 P62081;B5MCP9 P62081 59 70 RPS7 40S ribosomal protein S7 yes no 2 6.2544E-09 123.92 4 2 0.88672 0.92983 17.909 6 Median 0.90857 1.0493 11.853 4 0 Median 0.87935 0.76114 3.1833 2 0 Median 1640800000 834920000 805860000 1319500000 670350000 649110000 321330000 164570000 156760000 597 1631 614 1576;1577;1578;1579;1580;1581 2463;2464;2465;2466;2467;2468;2469;2470;2471;2472;2473;2474 2463 11 AIILAAAPGEK VLQAGQYGVAQTRRRAIILAAAPGEKLPLF TRRRAIILAAAPGEKLPLFPEPLHVFAPRA R A I E K L 4 0 0 0 0 0 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 0 11 0 1052.623 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0;K7ENW7 A0A024R7E3 1375 1385 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0064337 54.416 1 2 0.91521 0.72479 0.55458 2 Median NaN NaN NaN 0 0 Median 0.91521 0.72479 0.55458 2 0 Median 13352000 2559700 10792000 8414400 0 8414400 4937600 2559700 2378000 598 222 615 1582;1583;1584 2475;2476;2477;2478;2479 2477 5 AILAGAQPIEEMR PITSPIENIIAIYEKAILAGAQPIEEMRHT EKAILAGAQPIEEMRHTIVDILTMKSQEKA K A I M R H 3 1 0 0 0 1 2 1 0 2 1 0 1 0 1 0 0 0 0 0 0 0 13 0 1397.7337 B2RMQ4;Q8WWK9 B2RMQ4 486 498 CKAP2 Cytoskeleton-associated protein 2 yes no 2 6.3187E-05 90.05 2 2 1.2277 1.256 35.02 3 Median 1.2869 1.3532 10.542 2 0 Median 0.89046 0.74813 NaN 1 0 Median 66456000 33464000 32992000 59962000 28939000 31024000 6493700 4525700 1968000 599 895 616 1585;1586;1587;1588 2480;2481;2482;2483;2484;2485 2480 702 6 AILCLLLGGVER KSLAPSIHGHDYVKKAILCLLLGGVERDLE VKKAILCLLLGGVERDLENGSHIRGDINIL K A I E R D 1 1 0 0 1 0 1 2 0 1 4 0 0 0 0 0 0 0 0 1 0 0 12 0 1312.7537 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 316 327 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.00022453 88.495 1 1.0505 1.0842 NaN 1 Median 1.0505 1.0842 NaN 1 0 Median NaN NaN NaN 0 0 Median 6199900 3317800 2882000 6199900 3317800 2882000 0 0 0 600 568 617 1589 2486;2487 2486 2 AILDASR LEKLEELTMDGAKAKAILDASRSSMGMDIS TMDGAKAKAILDASRSSMGMDISAIDLINI K A I S R S 2 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 7 0 744.413 A8K9K6;O00567;A0PJ92;Q5JXT2;H0YDU4 A8K9K6 243 249 NOP56 Nucleolar protein 56 yes no 2 0.011173 109.11 1 0.67474 0.76892 NaN 1 Median 0.67474 0.76892 NaN 1 0 Median NaN NaN NaN 0 0 Median 102440000 62862000 39581000 102440000 62862000 39581000 0 0 0 601 785 618 1590 2488 2488 1 AILGEQRPR HLNPDTELKRYFGARAILGEQRPRQRQRVY RYFGARAILGEQRPRQRQRVYPKCTWLTTP R A I P R Q 1 2 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 9 1 1038.5934 Q9BQ70;H3BQ53;H3BSS3 Q9BQ70 199 207 TCF25 Transcription factor 25 yes no 3 0.009025 51.066 2 1.1374 1.1949 10.824 2 Median 1.1374 1.1949 10.824 2 0 Median NaN NaN NaN 0 0 Median 17746000 8415700 9330500 17746000 8415700 9330500 0 0 0 602 1996 619 1591;1592 2489;2490 2490 2 AILIDWLVQVQMK RPKYLLGREVTGNMRAILIDWLVQVQMKFR MRAILIDWLVQVQMKFRLLQETMYMTVSII R A I M K F 1 0 0 1 0 2 0 0 0 2 2 1 1 0 0 0 0 1 0 2 0 0 13 0 1555.8796 P14635;E9PC90;H1UBN2;H0YA62 P14635 203 215 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 3.9825E-06 96.331 3 0.86315 0.85646 NaN 1 Median 0.86315 0.85646 NaN 1 0 Median NaN NaN NaN 0 0 Median 8758000 6195100 2563000 8758000 6195100 2563000 0 0 0 603 1483 620 1593;1594;1595 2491;2492;2493 2491 1240 3 AILILDNDGDR ______________________________ YTVKAILILDNDGDRLFAKYYDDTYPSVKE K A I D R L 1 1 1 3 0 0 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1213.6303 F8VXB1;F8VUC5;F8W156;F8W651;F8VXR1;F8VYZ4;Q53FU3;A0A024RB72;F8VVA7;P61923 F8VXB1 15 25 COPZ1 Coatomer subunit zeta-1 yes no 2 0.00043973 76.465 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 604 325 621 1596 2494 2494 1 AILLPDLSEPNNEPLFSPASEVPRK SFTKSSRSSRTRSSKAILLPDLSEPNNEPL NNEPLFSPASEVPRKAKAKKIEVPAQLKEL K A I R K A 2 1 2 1 0 0 3 0 0 1 4 1 0 1 5 3 0 0 0 1 0 0 25 1 2732.4385 Q8WYP5;B3KRD0;H7C4S1 Q8WYP5 2104 2128 AHCTF1 Protein ELYS yes no 3 8.211E-14 83.606 2 2 1.9996 1.6401 9.1757 4 Linear 1.2293 1.3569 8.8423 2 0 Median 1.79 1.5415 3.4183 2 0 Median 73662000 31689000 41973000 29603000 14704000 14899000 44059000 16985000 27074000 605 1945 622 1597;1598;1599;1600 2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505 2499 11 AILMALR PGRVREALRQQDFTRAILMALRLNESKLVQ LRQQDFTRAILMALRLNESKLVQEALEAVP R A I L R L 2 1 0 0 0 0 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 7 0 786.47858 Q15269;A0A0B4J2E5 Q15269 762 768 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.027406 44.611 2 1.3476 1.4016 NaN 1 Median 1.3476 1.4016 NaN 1 0 Median NaN NaN NaN 0 0 Median 34178000 9912300 24266000 34178000 9912300 24266000 0 0 0 606 1756 623 1601;1602 2506;2507 2506 1622 2 AILQATLR IIEYLKQQVSLLKEKAILQATLREEKKLRV VSLLKEKAILQATLREEKKLRVENAKLKKE K A I L R E 2 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 884.54435 Q12904;D6R937;B4DNK3 Q12904 36 43 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 2 0.032517 57.722 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9967000 0 9967000 9967000 0 9967000 0 0 0 607 1702 624 1603 2508 2508 1 AILQENGCLSDSDMFSQAGLR TDYVIPCFDSVNSARAILQENGCLSDSDMF GCLSDSDMFSQAGLRSEAANGNLDFVLSFL R A I L R S 2 1 1 2 1 2 1 2 0 1 3 0 1 1 0 3 0 0 0 0 0 0 21 0 2311.0573 E5KNY5;P42704;B4DSR0;A0A0C4DG06 E5KNY5 493 513 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0021159 45.115 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 608 1207 625 1604 2509 2509 919 1 AILVDLEPGTMDSVR SVYYNEATGGKYVPRAILVDLEPGTMDSVR AILVDLEPGTMDSVRSGPFGQIFRPDNFVF R A I V R S 1 1 0 2 0 0 1 1 0 1 2 0 1 0 1 1 1 0 0 2 0 0 15 0 1614.8287 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;B4DMJ5;G3V5W4;G3V2R8;G3V3R4;G3V2N6;Q13885;B2R6L0;Q9BVA1;A5D907;A5D906;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92 Q5JP53 45 59 TUBB;TUBB3;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain no no 2 5.5972E-18 129.34 5 6 1.705 1.413 52.216 6 Median 2.0533 2.4242 4.8274 2 0 Median 1.4732 1.2326 40.383 4 0 Median 1581700000 515740000 1066000000 1477200000 480620000 996540000 104550000 35122000 69425000 609 1452;1723;502 626;627 1605;1606;1607;1608;1609;1610;1611;1612;1613;1614;1615 2510;2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526 2516 345 17 AILVVFANK KSELVAMLEEEELRKAILVVFANKQDMEQA EEELRKAILVVFANKQDMEQAMTSSEMANS K A I N K Q 2 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 2 0 0 9 0 973.59605 F8VYN9;P40616;B4DZG7 F8VYN9 119 127 ARL1 ADP-ribosylation factor-like protein 1 yes no 2 0.0018844 79.597 1 2.5132 2.6032 NaN 1 Median 2.5132 2.6032 NaN 1 0 Median NaN NaN NaN 0 0 Median 11211000 3610700 7600400 11211000 3610700 7600400 0 0 0 610 1262 628 1616 2527;2528 2527 2 AIMLGAKPPKK TGYGKGKERILEQERAIMLGAKPPKKSYVN EQERAIMLGAKPPKKSYVNYKVLQEQIKEK R A I K K S 2 0 0 0 0 0 0 1 0 1 1 3 1 0 2 0 0 0 0 0 0 0 11 2 1152.7053 Q8NDD1;Q5TBH9;Q5TBI2;B4E0F7 Q8NDD1 196 206 C1orf131 Uncharacterized protein C1orf131 yes no 2 0.0065333 44.349 1 1.7212 2.0119 NaN 1 Median 1.7212 2.0119 NaN 1 0 Median NaN NaN NaN 0 0 Median 9272100 2846900 6425200 9272100 2846900 6425200 0 0 0 611 1925 629 1617 2529 2529 1754 1 AINCATSGVVGLVNCLR GILADEDSSRPVWLKAINCATSGVVGLVNC NCATSGVVGLVNCLRREPGGNRLRCVLLSN K A I L R R 2 1 2 0 2 0 0 2 0 1 2 0 0 0 0 1 1 0 0 3 0 0 17 0 1802.9131 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1443 1459 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 5.2272E-05 74.46 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8416000 5039300 3376700 3376700 0 3376700 5039300 5039300 0 612 587 630 1618;1619;1620 2530;2531;2532 2531 3 AINIGQLVDVK EPKKEPAGHSQKKGKAINIGQLVDVKVLEK KKGKAINIGQLVDVKVLEKTKDGLEVAVLP K A I V K V 1 0 1 1 0 1 0 1 0 2 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1168.6816 Q14690;B4DH82;B4DES7 Q14690 632 642 PDCD11 Protein RRP5 homolog yes no 2 5.5799E-08 116.52 2 1.0645 1.1924 1.6867 2 Median 1.0645 1.1924 1.6867 2 0 Median NaN NaN NaN 0 0 Median 166230000 77869000 88366000 166230000 77869000 88366000 0 0 0 613 1741 631 1621;1622 2533;2534;2535;2536 2534 4 AINLLSGLGPNGQSK A I S K 1 0 2 0 0 1 0 3 0 1 3 1 0 0 1 2 0 0 0 0 0 0 15 0 1467.8045 REV__B3KRV8 yes no 2 0.0002234 69.01 1 3.2229 3.4876 NaN 1 Median 3.2229 3.4876 NaN 1 0 Median NaN NaN NaN 0 0 Median 43265000 12601000 30664000 43265000 12601000 30664000 0 0 0 + 614 2170 632 1623 2537 2537 1 AINQQTGAFVEISR HKCGLVIGRGGENVKAINQQTGAFVEISRQ KAINQQTGAFVEISRQLPPNGDPNFKLFII K A I S R Q 2 1 1 0 0 2 1 1 0 2 0 0 0 1 0 1 1 0 0 1 0 0 14 0 1532.7947 A0A087WTP3;Q92945;M0R3J3 A0A087WTP3 449 462 KHSRP Far upstream element-binding protein 2 yes no 2 3.7239E-21 144.1 2 1 1.1983 1.0975 40.315 2 Median 1.4727 1.4596 NaN 1 0 Median 0.97507 0.82532 NaN 1 0 Median 25832000 8169900 17662000 22878000 7042600 15835000 2954200 1127300 1827000 615 403 633 1624;1625;1626 2538;2539;2540;2541;2542;2543 2541 6 AINTLNGLR GYGFVNYVTAKDAERAINTLNGLRLQSKTI AKDAERAINTLNGLRLQSKTIKVSYARPSS R A I L R L 1 1 2 0 0 0 0 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 970.55598 Q15717;M0QZR9;B1AM48;B7Z5E0;B1APY9;B1APY8;A0A0A0MRX1;A0A0R4J2E6;Q12926;P26378 Q15717 77 85 ELAVL1;ELAVL2;ELAVL4 ELAV-like protein 1;ELAV-like protein;ELAV-like protein 2;ELAV-like protein 4 yes no 2 0.00079176 94.302 3 1.4563 1.5047 NaN 1 Median 1.4563 1.5047 NaN 1 0 Median NaN NaN NaN 0 0 Median 23713000 8742400 14971000 23713000 8742400 14971000 0 0 0 616 1764 634 1627;1628;1629 2544;2545;2546;2547 2544 4 AIPLALEGK VTDLGWSRPTLIQEKAIPLALEGKDLLARA TLIQEKAIPLALEGKDLLARARTGSGKTAA K A I G K D 2 0 0 0 0 0 1 1 0 1 2 1 0 0 1 0 0 0 0 0 0 0 9 0 910.54877 Q9NY93;Q53HB9;G3V0G3;F8WDT8;F8WEI3 Q9NY93 37 45 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0057716 65.88 2 0.92398 1.0267 2.6685 2 Median 0.92398 1.0267 2.6685 2 0 Median NaN NaN NaN 0 0 Median 110860000 58733000 52125000 110860000 58733000 52125000 0 0 0 617 2081 635 1630;1631 2548;2549;2550;2551 2549 4 AIPQLQGYLR IDQKAVDSQILPKIKAIPQLQGYLRSVFAL LPKIKAIPQLQGYLRSVFALTNGIYPHKLV K A I L R S 1 1 0 0 0 2 0 1 0 1 2 0 0 0 1 0 0 0 1 0 0 0 10 0 1157.6557 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7 Q8TBK5 263 272 RPL6 60S ribosomal protein L6 yes no 2 5.5216E-08 114.78 2 2 0.87661 0.89189 27.477 4 Median 0.94987 1.1273 2.3789 2 0 Median 0.80526 0.70156 3.2058 2 0 Median 3294500000 1765100000 1529400000 2856700000 1531700000 1325000000 437800000 233400000 204400000 618 342 636 1632;1633;1634;1635 2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566 2553 15 AIPTVNHSGTFSPQAPVPTTVPVVDVR QMNINIATWGRLVRRAIPTVNHSGTFSPQA PQAPVPTTVPVVDVRIPQLAPPASDSTVTK R A I V R I 2 1 1 1 0 1 0 1 1 1 0 0 0 1 5 2 4 0 0 6 0 0 27 0 2785.4763 Q16513;B1AL79 Q16513 524 550 PKN2 Serine/threonine-protein kinase N2 yes no 3 0.0031222 23.566 2 2.1702 2.1913 1.3442 2 Median 2.1702 2.1913 1.3442 2 0 Median NaN NaN NaN 0 0 Median 28718000 10911000 17806000 28718000 10911000 17806000 0 0 0 619 1769 637 1636;1637 2567;2568;2569;2570 2568 4 AIQDAILEVLK YLYRELLVHLDDPERAIQDAILEVLKEGSG DPERAIQDAILEVLKEGSGLFPDLLVRETE R A I L K E 2 0 0 1 0 1 1 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1211.7125 Q86Y56;B3KU91;H0Y650;E9PGY2;B3KNN3;B3KPE2;A0A024R803 Q86Y56 804 814 DNAAF5;FLJ20397 Dynein assembly factor 5, axonemal yes no 2 1.4563E-08 116.3 2 1 2.0727 2.199 NaN 1 Median 2.0727 2.199 NaN 1 0 Median NaN NaN NaN 0 0 Median 7678300 1262000 6416200 7311200 1262000 6049200 367020 0 367020 620 1888 638 1638;1639;1640 2571;2572;2573 2572 3 AIQGGTSHHLGQNFSK DYTTTIEAFISASGRAIQGGTSHHLGQNFS IQGGTSHHLGQNFSKMFEIVFEDPKIPGEK R A I S K M 1 0 1 0 0 2 0 3 2 1 1 1 0 1 0 2 1 0 0 0 0 0 16 0 1680.8332 P07814;B4DP50 P07814 1235 1250 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2;3 2.1077E-06 88.021 2 2 2.6163 2.7297 57.24 4 Linear 2.5043 2.5867 14.806 2 0 Median 1.1697 0.977 11.399 2 0 Median 31556000 8316100 23240000 27784000 6433300 21351000 3771700 1882900 1888800 621 1454 639 1641;1642;1643;1644 2574;2575;2576;2577;2578 2575 5 AIQHLWAAIEIIR ______________________________ TKAIQHLWAAIEIIRNQKQIANIDRITKYM K A I I R N 3 1 0 0 0 1 1 0 1 4 1 0 0 0 0 0 0 1 0 0 0 0 13 0 1532.8827 Q15326;E7ENI9;B0QZE2;B7Z2J6;E7EV75;E9PE09 Q15326 14 26 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 0.00076467 40.477 2 1.328 1.1573 2.0769 2 Median NaN NaN NaN 0 0 Median 1.328 1.1573 2.0769 2 0 Median 2752200 1267000 1485200 0 0 0 2752200 1267000 1485200 622 1758 640 1645;1646 2579;2580 2579 2 AIQTGEELFFDYR MMVNGDHRIGIFAKRAIQTGEELFFDYRYS KRAIQTGEELFFDYRYSQADALKYVGIERE R A I Y R Y 1 1 0 1 0 1 2 1 0 1 1 0 0 2 0 0 1 0 1 0 0 0 13 0 1587.7569 A0A090N8E9;Q15910;F2YMM1;S4S3R8;Q75MP9;Q75MQ0 A0A090N8E9 720 732 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 2 9.4817E-06 100.72 1 2 1.4596 1.3837 19.442 2 Median 1.1015 1.2059 NaN 1 0 Median 1.934 1.5876 NaN 1 0 Median 45541000 21567000 23974000 32752000 14172000 18580000 12789000 7395300 5394000 623 456 641 1647;1648;1649 2581;2582;2583;2584;2585;2586 2582 6 AIRPQIDLK EDPQTSREIFNFVLKAIRPQIDLKRYAVPS FNFVLKAIRPQIDLKRYAVPSAGLRLFALH K A I L K R 1 1 0 1 0 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 9 1 1052.6342 P78527;B4DL41 P78527 255 263 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2;3 0.019671 72.23 2 0.62586 0.73426 8.2909 2 Median 0.62586 0.73426 8.2909 2 0 Median NaN NaN NaN 0 0 Median 154950000 104600000 50352000 154950000 104600000 50352000 0 0 0 624 1665 642 1650;1651 2587;2588;2589 2587 3 AISAANLHLR YETQTFSSKTEWRVRAISAANLHLRTNHIY EWRVRAISAANLHLRTNHIYVSSDDIKETG R A I L R T 3 1 1 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1064.6091 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2077 2086 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 1.8359E-08 101.33 3 2 0.94201 1.0344 25.957 5 Median 0.96652 1.1029 4.5503 3 0 Median 0.7934 0.67996 0.38477 2 0 Median 312390000 168160000 144230000 305870000 164170000 141700000 6520400 3992900 2527400 625 1854 643 1652;1653;1654;1655;1656 2590;2591;2592;2593;2594;2595;2596 2593 7 AISALVPQGGPVLCR HAMDTLHKNIYDISKAISALVPQGGPVLCR AISALVPQGGPVLCRDEMEEWSASEANLFE K A I C R D 2 1 0 0 1 1 0 2 0 1 2 0 0 0 2 1 0 0 0 2 0 0 15 0 1536.8446 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7 E7ESY4 268 282 MTA1 Metastasis-associated protein MTA1 yes no 2 0.00077488 50.284 1 0.72871 0.73143 NaN 1 Median 0.72871 0.73143 NaN 1 0 Median NaN NaN NaN 0 0 Median 11217000 5440600 5776400 11217000 5440600 5776400 0 0 0 626 1223 644 1657 2597 2597 1 AISGVHTVR GTIGHVAHGKSTVVKAISGVHTVRFKNELE KSTVVKAISGVHTVRFKNELERNITIKLGY K A I V R F 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 2 0 0 9 0 938.52976 P41091;Q2VIR3;F8W810;H7BZU1 P41091 60 68 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 0.033037 29.667 2 1.8099 1.8393 8.2922 2 Median 1.8099 1.8393 8.2922 2 0 Median NaN NaN NaN 0 0 Median 35754000 12936000 22818000 35754000 12936000 22818000 0 0 0 627 1559 645 1658;1659 2598;2599;2600 2600 3 AISSTEAVLNNR EAALIQYLTNEEARKAISSTEAVLNNRFIR ARKAISSTEAVLNNRFIRVLWHRENNEQPT K A I N R F 2 1 2 0 0 0 1 0 0 1 1 0 0 0 0 2 1 0 0 1 0 0 12 0 1273.6626 D3DQF6;B3KY61;U3KPZ7;Q9P2N5;A0A087X0H9;Q5T8P6 D3DQF6 342 353 POU4F3;RBM27;RBM26 RNA-binding protein 27;RNA-binding protein 26 yes no 2 0.0059183 62.823 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 871060 0 871060 0 0 0 871060 0 871060 628 958 646 1660;1661;1662;1663 2601;2602;2603;2604 2604 4 AISSYFVSTMSSSIK RNGFPKQTAAQLILKAISSYFVSTMSSSIK AISSYFVSTMSSSIKTVYFVLFDSESIGIY K A I I K T 1 0 0 0 0 0 0 0 0 2 0 1 1 1 0 6 1 0 1 1 0 0 15 0 1606.7913 O75367;Q59FH0;B4DJC3 O75367 333 347 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 1.2948E-30 151.26 4 6 1.395 1.1413 37.933 9 Median 1.4462 1.72 44.605 3 0 Plateau 1.3512 1.0962 32.26 6 0 Median 2578100000 1128400000 1449700000 1968100000 817820000 1150300000 610010000 310620000 299390000 629 1401 647;648 1664;1665;1666;1667;1668;1669;1670;1671;1672;1673 2605;2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630 2605 1078 26 AISVHSTPEGCSSACK KIDVHRKENAGAAEKAISVHSTPEGCSSAC ISVHSTPEGCSSACKMILEIMHKEAKDTKT K A I C K M 2 0 0 0 2 0 1 1 1 1 0 1 0 0 1 4 1 0 0 1 0 0 16 0 1689.7451 Q9NZI8;D3DTW3 Q9NZI8 243 258 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2;3 1.1755E-24 167.71 3 2.8632 2.9655 5.1354 2 Median 2.8632 2.9655 5.1354 2 0 Median NaN NaN NaN 0 0 Median 28812000 7816900 20995000 28812000 7816900 20995000 0 0 0 630 2087 649 1674;1675;1676 2631;2632;2633;2634 2632 4 AISYHLVQK VMLAAQSRRSVPLLRAISYHLVQKPFSLTK SVPLLRAISYHLVQKPFSLTKDVLLDVAYA R A I Q K P 1 0 0 0 0 1 0 0 1 1 1 1 0 0 0 1 0 0 1 1 0 0 9 0 1057.592 D3DVL7;B4DU42;Q969Z0;C9IZN7;B3KRS4;B3KMT3;C9J7P5 D3DVL7 224 232 TBRG4 Protein TBRG4 yes no 2 0.02366 56.014 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7356200 0 7356200 7356200 0 7356200 0 0 0 631 1036 650 1677 2635 2635 1 AITAMGFK NLSFQDMNLSRPLLKAITAMGFKQPTPIQK LSRPLLKAITAMGFKQPTPIQKACIPVGLL K A I F K Q 2 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 8 0 837.44186 B3GQE6;A0A087X059;B7Z6D5;Q96GQ7 B3GQE6 201 208 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.016766 49.358 1 1.1865 1.2716 NaN 1 Median 1.1865 1.2716 NaN 1 0 Median NaN NaN NaN 0 0 Median 32540000 12090000 20450000 32540000 12090000 20450000 0 0 0 632 899;1099 651 1678 2636 2636 719 1 AITFFTEDDKPLLR IHRIGRTGRAGNKGKAITFFTEDDKPLLRS KAITFFTEDDKPLLRSVANVIQQAGCPVPE K A I L R S 1 1 0 2 0 0 1 0 0 1 2 1 0 2 1 0 2 0 0 0 0 0 14 1 1664.8774 Q9Y2R4;B3KM65;A0A087X121 Q9Y2R4 512 525 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 3 0.0001084 64.394 2 1.139 0.96346 7.2793 2 Median NaN NaN NaN 0 0 Median 1.139 0.96346 7.2793 2 0 Median 14848000 6388100 8460300 0 0 0 14848000 6388100 8460300 633 2126 652 1679;1680 2637;2638 2638 2 AITFVTQYDVELFQR IHRVGRTARAGRSGKAITFVTQYDVELFQR AITFVTQYDVELFQRIEHLIGKKLPGFPTQ K A I Q R I 1 1 0 1 0 2 1 0 0 1 1 0 0 2 0 0 2 0 1 2 0 0 15 0 1828.9359 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 356 370 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2 4.3284E-15 127.87 2 2 1.1446 1.0082 5.5312 4 Median 1.0025 1.0018 9.5539 2 0 Median 1.2089 1.0082 0.31699 2 0 Median 39671000 17968000 21703000 22040000 10064000 11975000 17631000 7903700 9727400 634 313 653 1681;1682;1683;1684 2639;2640;2641;2642;2643;2644;2645;2646 2640 8 AITGASLADIMAK EIQKKRTRRAVKFQRAITGASLADIMAKRN QRAITGASLADIMAKRNQKPEVRKAQREQA R A I A K R 4 0 0 1 0 0 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1260.6748 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 81 93 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 2 6.9492E-14 131.82 5 6 0.89428 0.7827 49.419 11 Median 0.49656 0.54656 45.768 5 0 Median 1.6591 1.4307 33.919 6 0 Median 2879500000 1392000000 1487400000 1770800000 916430000 854370000 1108700000 475620000 633070000 635 1140 654;655 1685;1686;1687;1688;1689;1690;1691;1692;1693;1694;1695 2647;2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2659;2660;2661;2662;2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;2674;2675;2676 2663 851 30 AITGFDDPFSGK LIDFDDRQQIYAAEKAITGFDDPFSGKTVS AEKAITGFDDPFSGKTVSVSEAIKKNLIDR K A I G K T 1 0 0 2 0 0 0 2 0 1 0 1 0 2 1 1 1 0 0 0 0 0 12 0 1253.5928 P15924;Q4LE79 P15924 2092 2103 DSP;DSP variant protein Desmoplakin yes no 2 0.00022091 83 2 1 0.72467 0.62911 8.1491 3 Median 0.65849 0.65925 10.873 2 0 Median 0.75998 0.62911 NaN 1 0 Median 53051000 30946000 22105000 51414000 30053000 21360000 1637600 892960 744680 636 1486 656 1696;1697;1698 2677;2678;2679;2680 2679 4 AITHLNNNFMFGQK GSAMVEMADGYAVDRAITHLNNNFMFGQKL RAITHLNNNFMFGQKLNVCVSKQPAIMPGQ R A I Q K L 1 0 3 0 0 1 0 1 1 1 1 1 1 2 0 0 1 0 0 0 0 0 14 0 1633.8035 B2R959;Q6NTA2;P14866;M0QXS5;M0QYT0 B2R959 404 417 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 3 0.0048671 43.761 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 637 865 657 1699 2681 2681 679 1 AITIAGIPQSIIECVK QVQVAGDMLPNSTERAITIAGIPQSIIECV ITIAGIPQSIIECVKQICVVMLETLSQSPP R A I V K Q 2 0 0 0 1 1 1 1 0 5 0 1 0 0 1 1 1 0 0 1 0 0 16 0 1711.9542 H3BRU6;F8VZX2;B4DRD7;F8VXH9;F8VRH0;Q15366;B4DLC0 Q15366 126 141 PCBP2 Poly(rC)-binding protein 2 no no 2 1.8851E-35 149.38 1 2 1.5384 1.2719 6.5081 2 Median NaN NaN NaN 0 0 Median 1.5384 1.2719 6.5081 2 0 Median 104300000 57379000 46919000 26073000 26073000 0 78225000 31306000 46919000 638 1263;1760 658 1700;1701;1702 2682;2683;2684 2682 3 AITIAGVPQSVTECVK QVQVAGDMLPNSTERAITIAGVPQSVTECV ITIAGVPQSVTECVKQICLVMLETLSQSPQ R A I V K Q 2 0 0 0 1 1 1 1 0 2 0 1 0 0 1 1 2 0 0 3 0 0 16 0 1671.8866 Q53SS8;Q15365 Q53SS8 145 160 PCBP1 Poly(rC)-binding protein 1 yes no 2 7.9851E-18 134.18 2 2 1.519 1.4424 43.251 4 Median 1.8651 2.1014 2.0017 2 0 Median 1.2451 0.99392 1.4542 2 0 Median 254090000 92813000 161280000 219840000 78069000 141770000 34256000 14744000 19512000 639 1759 659 1703;1704;1705;1706 2685;2686;2687;2688;2689;2690;2691 2685 7 AITYQIAK NSTEEQALEDQNAKRAITYQIAKNRGLTPR EDQNAKRAITYQIAKNRGLTPRRKKIDRNP R A I A K N 2 0 0 0 0 1 0 0 0 2 0 1 0 0 0 0 1 0 1 0 0 0 8 0 906.51747 Q9NQZ2 Q9NQZ2 410 417 UTP3 Something about silencing protein 10 yes yes 2 0.0075008 82.671 2 0.91177 1.0021 7.9819 2 Median 0.91177 1.0021 7.9819 2 0 Median NaN NaN NaN 0 0 Median 118560000 60648000 57916000 118560000 60648000 57916000 0 0 0 640 2063 660 1707;1708 2692;2693;2694 2693 3 AIVAESLNNTSIK VELNASDTRSKSSLKAIVAESLNNTSIKGF LKAIVAESLNNTSIKGFYSNGAASSVSTKH K A I I K G 2 0 2 0 0 0 1 0 0 2 1 1 0 0 0 2 1 0 0 1 0 0 13 0 1358.7405 P35251;H0Y8U4 P35251 688 700 RFC1 Replication factor C subunit 1 yes no 2 3.5158E-16 121.6 3 2 0.89886 1.0857 23.91 4 Linear 0.89886 0.93314 4.0515 2 0 Median 0.83203 0.67166 24.852 2 0 Median 50663000 28553000 22110000 36861000 21169000 15692000 13802000 7384000 6417900 641 1542 661 1709;1710;1711;1712;1713 2695;2696;2697;2698;2699;2700 2695 5 AIVAIENPADVSVISSR INLKRTWEKLLLAARAIVAIENPADVSVIS VAIENPADVSVISSRNTGQRAVLKFAAATG R A I S R N 3 1 1 1 0 0 1 0 0 3 0 0 0 0 1 3 0 0 0 3 0 0 17 0 1739.9418 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;Q96RS2;F8WD59 C9J9K3 64 80 RPSA;LOC388524 40S ribosomal protein SA yes no 2 1.5522E-81 205.72 2 2 1.6278 1.6401 22.322 4 Median 1.6884 1.9819 0.36375 2 0 Median 1.5574 1.3468 1.4438 2 0 Median 905210000 332890000 572320000 817750000 299360000 518390000 87460000 33530000 53930000 642 119 662 1714;1715;1716;1717 2701;2702;2703;2704;2705;2706;2707;2708 2702 8 AIVEFLSNLAR TNVRIWKVEKGPDGKAIVEFLSNLARHTKA PDGKAIVEFLSNLARHTKAVNVVRFSPTGE K A I A R H 2 1 1 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1231.6925 B2R7X3;Q13112 B2R7X3 54 64 CHAF1B Chromatin assembly factor 1 subunit B yes no 2 0.00092259 71.451 2 1 0.98457 1.0181 25.55 3 Median 1.0183 1.0406 3.0863 2 0 Median 0.75717 0.66955 NaN 1 0 Median 12781000 6454900 6326500 11705000 5833600 5871200 1076600 621340 455300 643 856 663 1718;1719;1720 2709;2710;2711;2712 2709 4 AIVFVVDSAAFQR SLRLQFLERFKSSARAIVFVVDSAAFQREV ARAIVFVVDSAAFQREVKDVAEFLYQVLID R A I Q R E 3 1 0 1 0 1 0 0 0 1 0 0 0 2 0 1 0 0 0 3 0 0 13 0 1421.7667 Q549N5;Q9Y5M8;H7C4H2 Q549N5 138 150 SRPRB Signal recognition particle receptor subunit beta yes no 2 7.8143E-14 120.68 2 1.0357 1.0486 NaN 1 Median 1.0357 1.0486 NaN 1 0 Median NaN NaN NaN 0 0 Median 23068000 15631000 7436800 23068000 15631000 7436800 0 0 0 644 1794 664 1721;1722 2713;2714 2714 2 AIVHAVGQELQVTGPFNLQLIAK TPPQDITAKTLERIKAIVHAVGQELQVTGP ELQVTGPFNLQLIAKDDQLKVIECNVRVSR K A I A K D 3 0 1 0 0 3 1 2 1 2 3 1 0 1 1 0 1 0 0 3 0 0 23 0 2445.3744 Q53SY7;F8VPD4;P27708 Q53SY7 1110 1132 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.028673 15.546 1 0.69178 0.53957 NaN 1 Median NaN NaN NaN 0 0 Median 0.69178 0.53957 NaN 1 0 Median 3769400 1930600 1838800 0 0 0 3769400 1930600 1838800 645 1259 665 1723 2715 2715 1 AIVICPTDEDLK AQRRKMRPFEGFQRKAIVICPTDEDLKDRT QRKAIVICPTDEDLKDRTIKRTDEEGKDVP K A I L K D 1 0 0 2 1 0 1 0 0 2 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1372.6908 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0;B3KM60 M0R3F1 377 388 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 0.00022519 83.869 2 2 0.94689 1.0046 18.488 4 Linear 0.94689 0.9822 3.3283 2 0 Median 0.9219 0.72505 9.6394 2 0 Median 49235000 24508000 24727000 41564000 20617000 20947000 7671600 3891600 3779900 646 49 666 1724;1725;1726;1727 2716;2717;2718;2719;2720;2721;2722;2723;2724;2725 2719 10 AIVLAAIFR GQRLAHISTDPRLAKAIVLAAIFRCLHPLL DPRLAKAIVLAAIFRCLHPLLVVVSCLTRD K A I F R C 3 1 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 9 0 972.61204 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 858 866 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0080845 68.915 1 2 1.1235 0.98654 NaN 1 Median NaN NaN NaN 0 0 Median 1.1235 0.98654 NaN 1 0 Median 5576700 722430 4854300 2964200 0 2964200 2612500 722430 1890100 647 122 667 1728;1729;1730 2726;2727;2728 2726 3 AIVPQALSGIIK CDKRLWTKIDLSRCKAIVPQALSGIIKRQP RCKAIVPQALSGIIKRQPVSLDLSWTNISK K A I I K R 2 0 0 0 0 1 0 1 0 3 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1208.7493 I3VM54;I3VM53;Q9Y2K7 I3VM54 923 934 KDM2A Lysine-specific demethylase 2A yes no 2 0.00019951 78.655 1 1 0.54256 0.489 15.9 2 Median 0.52672 0.54719 NaN 1 0 Median 0.55887 0.437 NaN 1 0 Median 49907000 34409000 15498000 33607000 23805000 9802200 16300000 10605000 5695600 648 1323 668 1731;1732 2729;2730 2729 2 AIVSSGTLGDR SKTNSQKGASSTWMKAIVSSGTLGDRMAAM TWMKAIVSSGTLGDRMAAMILLIQDDAVHT K A I D R M 1 1 0 1 0 0 0 2 0 1 1 0 0 0 0 2 1 0 0 1 0 0 11 0 1074.5669 B2R5U7;Q03701 B2R5U7 237 247 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.00040176 81.338 1 0.88817 1.0234 NaN 1 Median 0.88817 1.0234 NaN 1 0 Median NaN NaN NaN 0 0 Median 73106000 35442000 37663000 73106000 35442000 37663000 0 0 0 649 836;1683 669 1733 2731;2732 2731 2 AIYAALSGNLK CWRMAEDELFNRYERAIYAALSGNLKQLLP RYERAIYAALSGNLKQLLPVCDTWEDTVWA R A I L K Q 3 0 1 0 0 0 0 1 0 1 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1119.6288 P57740;B3KMK0;H0YG15 P57740 426 436 NUP107 Nuclear pore complex protein Nup107 yes no 2 3.837E-05 99.802 2 2 1.5658 1.6078 17.101 3 Plateau 1.5658 1.5552 12.021 2 0 Median 1.4416 1.2028 NaN 1 0 Median 26070000 9905900 16165000 23965000 9392800 14572000 2105600 513160 1592400 650 1621 670 1734;1735;1736;1737 2733;2734;2735;2736 2733 4 AIYAYALQVFPSK DADSCVAHNALECARAIYAYALQVFPSKKS ARAIYAYALQVFPSKKSVWLRAAYFEKNHG R A I S K K 3 0 0 0 0 1 0 0 0 1 1 1 0 1 1 1 0 0 2 1 0 0 13 0 1469.7919 O94906 O94906 561 573 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00013014 99.283 2 2 0.71188 0.64608 46.222 4 Median 0.42545 0.43235 9.7325 2 0 Median 1.1926 0.95328 7.9341 2 0 Median 32846000 20993000 11853000 26882000 18094000 8788000 5964400 2899400 3065000 651 1418 671 1738;1739;1740;1741 2737;2738;2739;2740 2738 4 AIYDTPCIQAESEK DQHEGSYLSICKHYRAIYDTPCIQAESEKW RAIYDTPCIQAESEKWQQALKSVVLYVILA R A I E K W 2 0 0 1 1 1 2 0 0 2 0 1 0 0 1 1 1 0 1 0 0 0 14 0 1623.745 A0A0S2Z489;O00232;A0A0S2Z476 A0A0S2Z489 249 262 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 0.0054003 55.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 652 558 672 1742 2741 2741 1 AKEEEGVPDEEGWVK FMEAYDQKIAEEEAKAKEEEGVPDEEGWVK AKEEEGVPDEEGWVKVTRRGRRPVLPRTEA K A K V K V 1 0 0 1 0 0 5 2 0 0 0 2 0 0 1 0 0 1 0 2 0 0 15 1 1700.7893 Q9Y3A4;Q9NSQ0 Q9Y3A4 191 205 RRP7A;RRP7BP Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 2;3 8.8403E-10 121.04 3 2 0.89508 1.0568 13.486 5 Median 0.89508 1.0568 7.5101 3 0 Plateau 1.4515 1.2488 1.5756 2 0 Median 93602000 49951000 43651000 82956000 45803000 37152000 10646000 4147200 6498700 653 2133 673 1743;1744;1745;1746;1747 2742;2743;2744;2745;2746 2743 5 AKQEELEAALQR AEAEERGELALKDARAKQEELEAALQRGKQ DARAKQEELEAALQRGKQDMARQLREYQEL R A K Q R G 3 1 0 0 0 2 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1384.731 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 352 363 KRT7 Keratin, type II cytoskeletal 7 no no 2;3 0.0091235 58.699 3 0.99339 0.83259 8.9529 3 Median NaN NaN NaN 0 0 Median 0.99339 0.83259 8.9529 3 0 Median 15313000 7855500 7457400 0 0 0 15313000 7855500 7457400 + 654 1171;1158 674 1748;1749;1750 2747;2748;2749 2747 3 AKVDEFPLCGHMVSDEYEQLSSEALEAAR VPDAKIRIFDLGRKKAKVDEFPLCGHMVSD DEYEQLSSEALEAARICANKYMVKSCGKDG K A K A R I 4 1 0 2 1 1 5 1 1 0 3 1 1 1 1 3 0 0 1 2 0 0 29 1 3280.5016 X1WI28;X5D2T3;P27635;B8A6G2;X5D2W5;A6QRI9 X1WI28 41 69 RPL10 60S ribosomal protein L10 yes no 4 0.044535 9.2214 1 1.0071 0.88591 NaN 1 Median NaN NaN NaN 0 0 Median 1.0071 0.88591 NaN 1 0 Median 34249000 14484000 19765000 0 0 0 34249000 14484000 19765000 655 1524 675 1751 2750 2750 1 ALAAAGYDVEK ASKERSGVSLAALKKALAAAGYDVEKNNSR ALKKALAAAGYDVEKNNSRIKLGLKSLVSK K A L E K N 4 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1106.5608 Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16402;Q02539;A1L407;P22492;P16403 Q4VB24 65 75 HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.1;Histone H1t;Histone H1.2 no no 2 2.8008E-05 102.06 8 1 1.0941 1.0746 NaN 1 Median 1.0941 1.0746 NaN 1 0 Median NaN NaN NaN 0 0 Median 13513000000 13494000000 19031000 13510000000 13494000000 16089000 2942000 0 2942000 656 656;1490 676 1752;1753;1754;1755;1756;1757;1758;1759;1760 2751;2752;2753;2754;2755;2756;2757;2758;2759;2760;2761;2762;2763 2754 13 ALAAFLK PGVTVKDVNQQEFVRALAAFLKKSGKLKVP VNQQEFVRALAAFLKKSGKLKVPEWVDTVK R A L L K K 3 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 7 0 732.45341 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 B0ZBD0 17 23 RPS19 40S ribosomal protein S19 yes no 2 0.026742 77.72 2 2 1.1455 1.1137 20.887 4 Median 1.1455 1.3193 2.822 2 0 Median 1.1416 0.92349 5.3386 2 0 Median 421520000 196060000 225460000 407480000 189560000 217920000 14042000 6495400 7547000 657 811 677 1761;1762;1763;1764 2764;2765;2766;2767;2768;2769 2767 6 ALAAGGYDVEK ASKERNGLSLAALKKALAAGGYDVEKNNSR ALKKALAAGGYDVEKNNSRIKLGLKSLVSK K A L E K N 3 0 0 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1092.5451 P16401 P16401 68 78 HIST1H1B Histone H1.5 yes yes 2 2.8008E-05 102.06 3 2 0.57634 0.64669 NaN 1 Median 0.57634 0.64669 NaN 1 0 Median NaN NaN NaN 0 0 Median 12667000000 12638000000 29325000 11444000000 11414000000 29325000 1223400000 1223400000 0 658 1489 678 1765;1766;1767;1768;1769 2770;2771;2772;2773;2774;2775;2776;2777;2778;2779;2780 2772 10 ALADDDFLTVTGK SDIAITKDMFEEALRALADDDFLTVTGKTV LRALADDDFLTVTGKTVRLL__________ R A L G K T 2 0 0 3 0 0 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 13 0 1364.6824 B4DLA6;B3KMX0;A0A024R7U6;P33991;A4FS09 B4DLA6 806 818 MCM4 DNA replication licensing factor MCM4 yes no 2 0.012116 39.785 1 0.84982 0.67167 NaN 1 Median NaN NaN NaN 0 0 Median 0.84982 0.67167 NaN 1 0 Median 3937300 2010000 1927300 0 0 0 3937300 2010000 1927300 659 235 679 1770 2781 2781 1 ALADENEFVR KFTPYVGPIIPCILKALADENEFVRDTALR PCILKALADENEFVRDTALRAGQRVISMYA K A L V R D 2 1 1 1 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1162.5619 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1785 1794 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0032667 65.305 1 1.6845 1.7385 NaN 1 Median 1.6845 1.7385 NaN 1 0 Median NaN NaN NaN 0 0 Median 13986000 4943600 9042000 13986000 4943600 9042000 0 0 0 660 1205 680 1771 2782 2782 1 ALADHSMAQTPR LVGNEAVDQLVKFNRALADHSMAQTPRLID FNRALADHSMAQTPRLIDGIVLTKFDTIDD R A L P R L 3 1 0 1 0 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 12 0 1296.6245 Q6IAX9;P08240;A0A024R3M0 Q6IAX9 569 580 SRPR Signal recognition particle receptor subunit alpha yes no 2;3 0.00078069 56.951 2 1.104 1.1349 6.4234 2 Median 1.104 1.1349 6.4234 2 0 Median NaN NaN NaN 0 0 Median 9840500 4661500 5179100 9840500 4661500 5179100 0 0 0 661 1455 681 1772;1773 2783;2784 2784 1164 2 ALAEPCAVLPTVCAPYIPPQR RSTSKVRKKAKKAKKALAEPCAVLPTVCAP AVLPTVCAPYIPPQRLNRIANQVAIQRKKQ K A L Q R L 4 1 0 0 2 1 1 0 0 1 2 0 0 0 5 0 1 0 1 2 0 0 21 0 2322.1864 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41;Q59G93 A0A024R4W4 436 456 BRD1 Bromodomain-containing protein 1 yes no 2 0.019855 31.526 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2252700 0 2252700 0 0 0 2252700 0 2252700 662 162 682 1774 2785 2785 1 ALAEVDVISLEQGK LLEKVPAELICLDPRALAEVDVISLEQGKK RALAEVDVISLEQGKKEQIERLGYDPQAKA R A L G K K 2 0 0 1 0 1 2 1 0 1 2 1 0 0 0 1 0 0 0 2 0 0 14 0 1470.793 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15 B0UZZ8 520 533 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 1.2762E-69 202.03 2 2 1.0421 1.0016 3.2183 4 Median 0.88321 1.0044 1.6922 2 0 Median 1.2368 0.97837 4.6147 2 0 Median 278050000 142000000 136050000 249110000 129110000 120000000 28945000 12889000 16056000 663 809 683 1775;1776;1777;1778 2786;2787;2788;2789;2790;2791;2792;2793;2794 2787 9 ALAEVDVISLEQGKK LLEKVPAELICLDPRALAEVDVISLEQGKK ALAEVDVISLEQGKKEQIERLGYDPQAKAP R A L K K E 2 0 0 1 0 1 2 1 0 1 2 2 0 0 0 1 0 0 0 2 0 0 15 1 1598.8879 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15 B0UZZ8 520 534 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2;3 0.0010202 68.44 1 4 1.2339 1.0547 16.067 5 Median 0.65801 0.75861 NaN 1 0 Median 1.2522 1.0652 3.9535 4 0 Median 70521000 35401000 35120000 28352000 17394000 10958000 42169000 18006000 24162000 664 809 684 1779;1780;1781;1782;1783 2795;2796;2797;2798;2799;2800;2801;2802;2803 2802 9 ALAILSQPTPSLVVDHER RRSQVEQQQLITVEKALAILSQPTPSLVVD ILSQPTPSLVVDHERLKNLLKTVVKKSQNY K A L E R L 2 1 0 1 0 1 1 0 1 1 3 0 0 0 2 2 1 0 0 2 0 0 18 0 1945.0633 A0A024R9G7;Q6PL18;A0A0B4J211 A0A024R9G7 1315 1332 ATAD2 ATPase family AAA domain-containing protein 2 yes no 3 0.00010883 42.059 2 2 1.0932 1.018 28.976 4 Median 0.75835 0.75601 19.325 2 0 Median 1.4015 1.2013 0.66162 2 0 Median 26977000 13803000 13174000 19735000 10195000 9540200 7242200 3608700 3633500 665 278 685 1784;1785;1786;1787 2804;2805;2806;2807;2808 2808 3 ALALDCEMVGVGPK SLSLVKEQAFGGLTRALALDCEMVGVGPKG RALALDCEMVGVGPKGEESMAARVSIVNQY R A L P K G 2 0 0 1 1 0 1 2 0 0 2 1 1 0 1 0 0 0 0 2 0 0 14 0 1458.7211 Q9GZR2;B4E331;B4DJ95;A0A0C4DG22 Q9GZR2 243 256 REXO4 RNA exonuclease 4 yes no 2 0.00028952 81.017 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 666 2021 686 1788;1789;1790 2809;2810;2811 2809 1855 3 ALALNCFAPINDQEGAEAK TAEQSCDQKLTNTNRALALNCFAPINDQEG NCFAPINDQEGAEAKDWRSGKPVRVVRNVK R A L A K D 5 0 2 1 1 1 2 1 0 1 2 1 0 1 1 0 0 0 0 0 0 0 19 0 2030.9731 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 520 538 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 1.0499E-05 72.891 1 1 1.0938 0.87521 NaN 1 Median NaN NaN NaN 0 0 Median 1.0938 0.87521 NaN 1 0 Median 7156600 4193800 2962700 0 0 0 7156600 4193800 2962700 667 406 687 1791;1792 2812;2813;2814 2814 3 ALAQEDQGAGEVER AVREKEVEAIQAQAKALAQEDQGAGEVERT KALAQEDQGAGEVERTSRAVEEKFRALCQP K A L E R T 3 1 0 1 0 2 3 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 14 0 1471.6903 O15020 O15020 1448 1461 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.0051735 56.087 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2352200 0 2352200 2352200 0 2352200 0 0 0 668 1372 688 1793 2815 2815 1 ALASILLQDHIR VLVQKDQHSFELDEKALASILLQDHIRDLD DEKALASILLQDHIRDLDVVVVSVAGAFRK K A L I R D 2 1 0 1 0 1 0 0 1 2 3 0 0 0 0 1 0 0 0 0 0 0 12 0 1348.7827 F5H6I7;B4DXC4;Q6DD88;F5GWF8 F5H6I7 27 38 ATL3 Atlastin-3 yes no 2 0.029791 45.908 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 669 1047 689 1794 2816 2816 1 ALASNTSFFSGCSPIEEEAH TEYQENKAPGKKKKRALASNTSFFSGCSPI TSFFSGCSPIEEEAH_______________ R A L A H - 3 0 1 0 1 0 3 1 1 1 1 0 0 2 1 4 1 0 0 0 0 0 20 0 2152.9371 Q59HG1;O95239;B4DYE2;B3KNC0;Q2VIQ3 Q59HG1 1216 1235 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 5.2578E-05 60.49 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8338000 0 0 6268800 0 0 2069200 0 0 670 1803 690 1795;1796;1797 2817;2818;2819;2820;2821 2817 5 ALATHPGISFYEEPR FPLPLEPCTQEFLWRALATHPGISFYEEPR ALATHPGISFYEEPRERPDLQLQDRYEEID R A L P R E 2 1 0 0 0 0 2 1 1 1 1 0 0 1 2 1 1 0 1 0 0 0 15 0 1686.8366 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 50 64 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 0.0001093 59.261 2 2 1.1126 1.0783 25.941 4 Median 0.79685 0.85159 14.27 2 0 Median 1.53 1.2965 6.9523 2 0 Median 85200000 44579000 40620000 76174000 41239000 34935000 9026100 3340500 5685600 671 1699 691 1798;1799;1800;1801 2822;2823;2824;2825;2826;2827;2828;2829 2822 8 ALAVVYGPHEIR AQADGSAYIEQGNTKALAVVYGPHEIRGSR NTKALAVVYGPHEIRGSRARALPDRALVNC K A L I R G 2 1 0 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 1 2 0 0 12 0 1323.7299 Q9NPD3;E9PPI9 Q9NPD3 48 59 EXOSC4 Exosome complex component RRP41 yes no 2;3 0.0061329 50.292 1 3 1.0132 0.86554 6.4709 3 Median 0.80819 0.83926 NaN 1 0 Median 1.0623 0.90693 6.6068 2 0 Median 32724000 18340000 14384000 22420000 12991000 9428400 10305000 5349100 4955600 672 2056 692 1802;1803;1804;1805 2830;2831;2832;2833 2830 4 ALDCSSSIR DQFLVVARAVGTFARALDCSSSIRQPSLHM VGTFARALDCSSSIRQPSLHMSAAAASRDI R A L I R Q 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 9 0 1007.4706 A0A024R534;O94776 A0A024R534 206 214 MTA2 Metastasis-associated protein MTA2 yes no 2 0.0012209 88.294 1 2 1.7298 1.472 40.402 3 Median 0.68611 0.78168 NaN 1 0 Median 1.8117 1.5619 8.3812 2 0 Median 58501000 32605000 25897000 49562000 29367000 20195000 8940000 3238400 5701600 673 168 693 1806;1807;1808 2834;2835;2836;2837;2838;2839 2835 6 ALDEGDIALLK QRKTKEDEKDDKPIRALDEGDIALLKTYGQ KPIRALDEGDIALLKTYGQSTYSRQIKQVE R A L L K T 2 0 0 2 0 0 1 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1156.634 A0A140VK70;P35998;C9JLS9 A0A140VK70 24 34 PSMC2 26S protease regulatory subunit 7 yes no 2 6.5485E-08 114.97 1 2.3627 2.4486 NaN 1 Median 2.3627 2.4486 NaN 1 0 Median NaN NaN NaN 0 0 Median 33295000 8742300 24552000 33295000 8742300 24552000 0 0 0 674 620 694 1809 2840 2840 1 ALDELMDGDIIVFQK NLTERIQDYDVSLDKALDELMDGDIIVFQK ALDELMDGDIIVFQKDDPENDNSELPTAKE K A L Q K D 1 0 0 3 0 1 1 1 0 2 2 1 1 1 0 0 0 0 0 1 0 0 15 0 1705.8597 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5 Q93009 756 770 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 2.1434E-05 85.813 1 1.1345 1.1452 NaN 1 Median 1.1345 1.1452 NaN 1 0 Median NaN NaN NaN 0 0 Median 13260000 5724700 7535700 13260000 5724700 7535700 0 0 0 675 1954 695 1810 2841 2841 1802 1 ALDIPLVK WAPRPFNLRSGRTRRALDIPLVKNWYREHC RSGRTRRALDIPLVKNWYREHCPAGQPVKV R A L V K N 1 0 0 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 8 0 867.54295 Q6P2Q9;I3L0J9 Q6P2Q9 421 428 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.011407 69.998 2 0.96163 0.99287 13.05 2 Median 0.96163 0.99287 13.05 2 0 Median NaN NaN NaN 0 0 Median 58403000 27585000 30818000 58403000 27585000 30818000 0 0 0 676 1854 696 1811;1812 2842;2843;2844 2843 3 ALDLADMITR IPNRIMFSEMKRVTKALDLADMITRVIQEG KRVTKALDLADMITRVIQEGLEGLVLKDVK K A L T R V 2 1 0 2 0 0 0 0 0 1 2 0 1 0 0 0 1 0 0 0 0 0 10 0 1117.5801 P49916;B7Z6I3 P49916 639 648 LIG3 DNA ligase 3;DNA ligase yes no 2 0.042278 48.794 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 331740 331740 0 0 0 0 331740 331740 0 677 1589 697 1813 2845;2846 2845 2 ALDLVGPTPATPAAPGER ALLSAAYGRRRLLCRALDLVGPTPATPAAP LVGPTPATPAAPGERNPVVLLNRLRAGLRY R A L E R N 4 1 0 1 0 0 1 2 0 0 2 0 0 0 4 0 2 0 0 1 0 0 18 0 1731.9155 Q9NS39 Q9NS39 260 277 ADARB2 Double-stranded RNA-specific editase B2 yes yes 2 0.002649 53.754 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 678 2066 698 1814 2847 2847 1 ALDQFVNFSEQK QCNTELKKYSHVNKKALDQFVNFSEQKEKL NKKALDQFVNFSEQKEKLIKRQEELDRGYK K A L Q K E 1 0 1 1 0 2 1 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 12 0 1424.6936 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 986 997 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0033141 56.359 1 2 1.1729 1.1447 10.441 3 Plateau 1.1677 1.1447 NaN 1 0 Median 1.2059 0.9694 5.823 2 0 Median 31580000 15252000 16328000 22505000 11060000 11445000 9075200 4192300 4882900 679 803 699 1815;1816;1817 2848;2849;2850 2848 3 ALDQSDNDMSAVYR TPMAAAANEVYKRAKALDQSDNDMSAVYRA KALDQSDNDMSAVYRAYIH___________ K A L Y R A 2 1 1 3 0 1 0 0 0 0 1 0 1 0 0 2 0 0 1 1 0 0 14 0 1583.6886 D3DUE6;K7EMM8;D3DUE7;Q49A26 D3DUE7 552 565 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2 5.5607E-47 182.35 2 2 1.6243 1.7224 23.716 4 Linear 1.6014 1.7 7.6143 2 0 Median 1.358 1.1384 4.6414 2 0 Median 96722000 40698000 56024000 76861000 32560000 44301000 19861000 8138500 11723000 680 1194;1193 700 1818;1819;1820;1821 2851;2852;2853;2854;2855;2856 2852 908 6 ALEAEQVEITVGR KAARDSEHIDDETRRALEAEQVEITVGRFR RRALEAEQVEITVGRFRGQKPTLWALLNSE R A L G R F 2 1 0 0 0 1 3 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 13 0 1413.7464 A0A075B730;A0A087X1U6;P58107 A0A075B730 2077 2089 EPPK1 Epiplakin no no 2 0.0070158 54.7 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2017200 0 2017200 0 0 0 2017200 0 2017200 681 397;1622 701 1822 2857 2857 1 ALEAVFGK GKLFIGGLNTETNEKALEAVFGKYGRIVEV NTETNEKALEAVFGKYGRIVEVLLMKDRET K A L G K Y 2 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 833.4647 H0Y6E7;H3BT71;P38159;H3BR27;H3BNC1 H0Y6E7 25 32 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2 0.0083247 79.116 2 1 1.1027 1.2547 48.953 3 Median 1.2068 1.3695 12.376 2 0 Median 0.74246 0.59463 NaN 1 0 Median 256950000 122450000 134510000 248430000 117620000 130810000 8524900 4828400 3696500 682 1284 702 1823;1824;1825 2858;2859;2860;2861 2858 4 ALECFCQAASEVGKEEFLDR FMLGRCYLVTGEGQKALECFCQAASEVGKE CQAASEVGKEEFLDRLIRSEDGEIVSTPRL K A L D R L 3 1 0 1 2 1 4 1 0 0 2 1 0 2 0 1 0 0 0 1 0 0 20 1 2358.062 G3V198;Q12769;E9PR16 G3V198 891 910 NUP160 Nuclear pore complex protein Nup160 yes no 3 0.040593 17.296 1 0.58098 0.49634 NaN 1 Median NaN NaN NaN 0 0 Median 0.58098 0.49634 NaN 1 0 Median 2858400 1899600 958810 0 0 0 2858400 1899600 958810 683 1271 703 1826 2862 2862 1 ALECLPSK LRRSQAAASHRVLQRALECLPSKEHVDVIA SHRVLQRALECLPSKEHVDVIAKFAQLEFQ R A L S K E 1 0 0 0 1 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 8 0 916.4688 Q14690 Q14690 1751 1758 PDCD11 Protein RRP5 homolog yes yes 2 0.010755 71.501 2 1 1.2534 1.1459 4.8487 2 Median 1.069 1.1073 NaN 1 0 Median 1.4695 1.1859 NaN 1 0 Median 33003000 20666000 12337000 28693000 19118000 9574900 4309900 1547800 2762000 684 1741 704 1827;1828;1829 2863;2864;2865;2866 2864 4 ALEDAFLAIDAK IIKDQKAYKEGKLQKALEDAFLAIDAKLTT LQKALEDAFLAIDAKLTTEEVIKELAQIAG K A L A K L 4 0 0 2 0 0 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1275.6711 B4DDC8;B3KXL8;Q6IAU5;B2R665;O15355 B4DDC8 62 73 PPM1G Protein phosphatase 1G yes no 2 4.5147E-05 93.058 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 685 839 705 1830 2867 2867 1 ALEDLAGFK PGSKRQLQTPKEKAQALEDLAGFKELFQTP PKEKAQALEDLAGFKELFQTPGHTEELVAA Q A L F K E 2 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 962.5073 P46013 P46013 1220 1228 MKI67 Antigen KI-67 yes yes 1;2 0.0013285 86.833 3 2 1.9629 2.0988 17.085 5 Median 1.7791 2.0929 1.7196 3 0 Plateau 3.3746 2.8199 2.2463 2 0 Median 796150000 267700000 528440000 702450000 246710000 455740000 93695000 20992000 72702000 686 1569 706 1831;1832;1833;1834;1835 2868;2869;2870;2871;2872;2873;2874;2875;2876;2877 2868 9 ALEDLVDFK TGSRRQLRTRKEKARALEDLVDFKELFSAP RKEKARALEDLVDFKELFSAPGHTEESMTI R A L F K E 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1048.5441 P46013 P46013 2555 2563 MKI67 Antigen KI-67 yes yes 1;2 0.00070256 101.64 3 2 1.9532 2.1807 21.596 5 Median 1.8518 2.1593 4.5339 3 0 Plateau 3.5922 3.0659 1.0241 2 0 Median 833730000 273360000 560370000 683550000 240010000 443540000 150180000 33351000 116830000 687 1569 707 1836;1837;1838;1839;1840 2878;2879;2880;2881;2882;2883;2884;2885;2886;2887 2881 10 ALEEANADLEVK QNLNDRLASYLDKVRALEEANADLEVKIRD KVRALEEANADLEVKIRDWYQRQRPAEIKD R A L V K I 3 0 1 1 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1300.6511 CON__P02533;P02533;CON__Q6IFX2;CON__P08779;P08779;B4DWU0;B4E2J5 CON__P02533 135 146 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 1.5439E-47 177.06 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 276910000 276910000 0 238120000 238120000 0 38793000 38793000 0 + 688 1150;1159 708 1841;1842;1843;1844 2888;2889;2890;2891 2888 4 ALEEANTELEVK QNLNDRLASYLDKVRALEEANTELEVKIRD KVRALEEANTELEVKIRDWYQRQAPGPARD R A L V K I 2 0 1 0 0 0 4 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1344.6773 CON__Q04695;Q04695;K7EPJ9;B4E2P9 CON__Q04695 104 115 KRT17 Keratin, type I cytoskeletal 17 no no 2 4.1202E-29 163.64 2 2 0.35266 0.31079 60.957 4 Median 0.18058 0.18162 9.2326 2 0 Median 0.64469 0.51909 5.802 2 0 Median 79601000 58812000 20790000 57371000 45860000 11511000 22231000 12952000 9278200 + 689 1168 709 1845;1846;1847;1848 2892;2893;2894;2895;2896;2897 2893 6 ALEEEEDDRPYDPEEEYDPER LDPIVQQFGQFSKDKALEEEEDDRPYDPEE DDRPYDPEEEYDPERAFDTQLVERGRRHEV K A L E R A 1 2 0 4 0 0 8 0 0 0 1 0 0 0 3 0 0 0 2 0 0 0 21 1 2624.0674 Q9BTC0 Q9BTC0 1375 1395 DIDO1 Death-inducer obliterator 1 yes yes 3 3.7427E-12 98.816 2 2 1.0573 1.0081 47.251 4 Median 0.6449 0.69587 2.2193 2 0 Median 1.7833 1.5634 11.861 2 0 Median 59596000 30035000 29561000 37923000 21681000 16242000 21673000 8353300 13319000 690 2002 710 1849;1850;1851;1852 2898;2899;2900;2901;2902;2903;2904;2905;2906 2902 9 ALEEELAGLK KDVQDELRIKENELRALEEELAGLKNTAEK ENELRALEEELAGLKNTAEKYRQLKQQWEM R A L L K N 2 0 0 0 0 0 3 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1071.5812 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 697 706 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 1;2 7.6247E-12 141.52 3 2 0.89151 1.049 24.437 5 Median 0.87951 1.0338 9.5711 3 0 Median 1.7759 1.5119 2.8315 2 0 Median 830850000 417570000 413280000 697700000 366890000 330810000 133150000 50682000 82466000 691 69 711 1853;1854;1855;1856;1857 2907;2908;2909;2910;2911;2912;2913;2914;2915 2911 8 ALEEGLTPQEICDK YLCGTDEYGTATETKALEEGLTPQEICDKY KALEEGLTPQEICDKYHIIHADIYRWFNIS K A L D K Y 1 0 0 1 1 1 3 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 14 0 1601.7607 A8K492;P56192;B4DF61;B4E0E9;A0A024RBA2;H0YHV5 A8K492 322 335 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 4.1456E-06 96.64 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23497000 0 23497000 21824000 0 21824000 1673000 0 1673000 692 732 712 1858;1859;1860 2916;2917;2918 2917 3 ALEEPGPAADPTAFQGPWAR DSKPGRRRALEALRRALEEPGPAADPTAFQ GPAADPTAFQGPWARLLLPRLLRCLSDPAE R A L A R L 5 1 0 1 0 1 2 2 0 0 1 0 0 1 4 0 1 1 0 0 0 0 20 0 2080.0014 Q86Y56 Q86Y56 56 75 DNAAF5 Dynein assembly factor 5, axonemal yes yes 2 0.040579 34.179 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 693 1888 713 1861 2919 2919 1 ALEESNYELEGK QNLNDRLASYLDKVRALEESNYELEGKIKE KVRALEESNYELEGKIKEWYEKHGNSHQGE R A L G K I 1 0 1 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 12 0 1380.6409 CON__P13645;P13645;CON__P02535-1 CON__P13645 166 177 KRT10 Keratin, type I cytoskeletal 10 yes no 2 5.4154E-20 136.63 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1643500000 1643500000 0 1481200000 1481200000 0 162250000 162250000 0 + 694 1161 714 1862;1863;1864 2920;2921;2922 2921 3 ALEFVTNPDIAAK QKQANEKRALRKKRKALEFVTNPDIAAKKK RKALEFVTNPDIAAKKKMKKHKNKSEAKKR K A L A K K 3 0 1 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 13 0 1387.7347 O75691;B4DN27 O75691 2732 2744 UTP20 Small subunit processome component 20 homolog yes no 2 2.3429E-05 120.06 2 2 1.3605 1.2973 11.223 4 Median 1.2889 1.4157 3.6499 2 0 Median 1.4577 1.1775 5.0125 2 0 Median 111330000 50536000 60789000 96010000 43901000 52109000 15315000 6634400 8680800 695 1412 715 1865;1866;1867;1868 2923;2924;2925;2926;2927;2928;2929;2930 2926 8 ALEHSALAINHK GKYTKFSDSYASVIKALEHSALAINHKLEI VIKALEHSALAINHKLEIKYIDSADLEPIT K A L H K L 3 0 1 0 0 0 1 0 2 1 2 1 0 0 0 1 0 0 0 0 0 0 12 0 1302.7044 P17812;B4E1E0;B4DMB5;A0A024RC00;Q9NRF8 P17812 320 331 CTPS1;CTPS2 CTP synthase 1;CTP synthase;CTP synthase 2 yes no 2;3 5.0945E-20 137.05 3 1 2.0548 2.2149 60.251 3 Plateau 2.0445 2.1379 5.0053 2 0 Median 0.95109 0.75429 NaN 1 0 Median 75027000 22088000 52940000 72677000 20982000 51696000 2349800 1105800 1244000 696 1494 716 1869;1870;1871;1872 2931;2932;2933;2934;2935 2933 5 ALEHVPNSVR ELETDIRAKKRVLRKALEHVPNSVRLWKAA RVLRKALEHVPNSVRLWKAAVELEEPEDAR K A L V R L 1 1 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 0 2 0 0 10 0 1120.5989 O94906 O94906 396 405 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.00021336 66.92 2 0.74609 0.78945 7.6775 2 Median 0.74609 0.78945 7.6775 2 0 Median NaN NaN NaN 0 0 Median 63080000 35044000 28036000 63080000 35044000 28036000 0 0 0 697 1418 717 1873;1874 2936;2937;2938 2936 3 ALEIADFSGNPLSR RNDIPEIPESIKFCKALEIADFSGNPLSRL KALEIADFSGNPLSRLPDGFTQLRSLAHLA K A L S R L 2 1 1 1 0 0 1 1 0 1 2 0 0 1 1 2 0 0 0 0 0 0 14 0 1488.7573 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;Q14160 A0A0G2JMS7 25 38 SCRIB Protein scribble homolog yes no 2 0.00059794 78.096 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3602100 0 3602100 3602100 0 3602100 0 0 0 698 534 718 1875;1876 2939;2940;2941 2939 3 ALELALK MDDKPGVSGQLPKGKALELALKRPRPPVLS SGQLPKGKALELALKRPRPPVLSVCSSSET K A L L K R 2 0 0 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 756.47454 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 267 273 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 0.017643 108.24 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2300900 2300900 0 2300900 2300900 0 0 0 0 699 2109 719 1877;1878 2942;2943 2943 2 ALELDGQSVK LKMQQHEQALADCRRALELDGQSVKAHFFL ADCRRALELDGQSVKAHFFLGQCQLEMESY R A L V K A 1 0 0 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1058.5608 Q9UNE7;H3BS86 Q9UNE7 86 95 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 0.0011014 76.17 1 1.7528 1.7225 NaN 1 Median 1.7528 1.7225 NaN 1 0 Median NaN NaN NaN 0 0 Median 23387000 9532400 13855000 23387000 9532400 13855000 0 0 0 700 2115 720 1879 2944 2944 1 ALELDSNLYR KGFMDGKQACVLMIKALELDSNLYRIGQSK VLMIKALELDSNLYRIGQSKVFFRAGVLAH K A L Y R I 1 1 1 1 0 0 1 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 10 0 1192.6088 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 746 755 MYH9 Myosin-9 yes no 2 3.7136E-30 176.6 2 2 2.2006 2.1732 12.29 4 Median 1.6744 1.9392 4.9371 2 0 Median 2.7682 2.3833 1.8772 2 0 Median 453360000 158850000 294510000 387830000 141290000 246540000 65533000 17558000 47975000 701 81 721 1880;1881;1882;1883 2945;2946;2947;2948;2949;2950;2951;2952;2953;2954 2947 10 ALELFVK LDVALEIRQAANIVRALELFVKADVLSGEN RQAANIVRALELFVKADVLSGENAYMCAKC R A L V K A 1 0 0 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 7 0 818.49019 A0A024R8V6;Q9P275;A0A075B784;E9PEW0;Q9H9C5;K7EMM6 A0A024R8V6 284 290 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.031504 67.035 2 1.3422 1.3361 4.7189 2 Median 1.3422 1.3361 4.7189 2 0 Median NaN NaN NaN 0 0 Median 50086000 22509000 27576000 50086000 22509000 27576000 0 0 0 702 260 722 1884;1885 2955;2956;2957 2956 3 ALELTGLK KFGYVDFESAEDLEKALELTGLKVFGNEIK SAEDLEKALELTGLKVFGNEIKLEKPKGKD K A L L K V 1 0 0 0 0 0 1 1 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 843.50657 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 286 293 NCL Nucleolin yes no 2 0.013109 66.073 2 2 0.76959 0.75419 61.012 4 Median 1.0676 1.2473 0.98708 2 0 Median 0.54416 0.43479 7.7288 2 0 Median 581060000 289170000 291890000 556470000 273240000 283230000 24589000 15927000 8662100 703 151 723 1886;1887;1888;1889 2958;2959;2960;2961;2962;2963 2961 6 ALEQIDENLIYWPR RRLWERVRLSKNYEKALEQIDENLIYWPRF KALEQIDENLIYWPRFIRHKCKQRFTKITQ K A L P R F 1 1 1 1 0 1 2 0 0 2 2 0 0 0 1 0 0 1 1 0 0 0 14 0 1758.8941 Q9BXY0;H0YBV6;A0PJ56 Q9BXY0 90 103 MAK16 Protein MAK16 homolog yes no 2 1.7576E-83 218.75 2 0.75118 0.84262 1.0476 2 Median 0.75118 0.84262 1.0476 2 0 Median NaN NaN NaN 0 0 Median 114680000 62323000 52354000 114680000 62323000 52354000 0 0 0 704 2016 724 1890;1891 2964;2965;2966;2967 2967 4 ALEQQVEEMK DDVGKSVHELEKSKRALEQQVEEMKTQLEE EKSKRALEQQVEEMKTQLEELEDELQATED R A L M K T 1 0 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 10 0 1203.5805 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1529 1538 MYH9;FLJ00279 Myosin-9 yes no 2 1.1689E-09 127.68 1 3.0086 3.0032 NaN 1 Median 3.0086 3.0032 NaN 1 0 Median NaN NaN NaN 0 0 Median 14587000 3148000 11439000 14587000 3148000 11439000 0 0 0 705 81 725 1892 2968 2968 51 1 ALERDPTEDDVESK ______________________________ RALERDPTEDDVESKKIKMERGLLASDLNT R A L S K K 1 1 0 3 0 0 3 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 14 1 1602.7373 A0A024R7K7;A0A024R7M6;Q86YP4;C9JHD7;C9JJK9;V9GYX5;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4 A0A024R7K7 14 27 GATAD2A Transcriptional repressor p66-alpha yes no 2;3 6.7654E-10 124.86 3 0.60888 0.67508 18.773 3 Median 0.60888 0.67508 18.773 3 0 Median NaN NaN NaN 0 0 Median 44086000 26042000 18044000 44086000 26042000 18044000 0 0 0 706 229 726 1893;1894;1895 2969;2970;2971;2972;2973 2970 5 ALESDMAPVLIMATNR EVHMLDIESFSFLNRALESDMAPVLIMATN LESDMAPVLIMATNRGITRIRGTSYQSPHG R A L N R G 3 1 1 1 0 0 1 0 0 1 2 0 2 0 1 1 1 0 0 1 0 0 16 0 1730.8695 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 315 330 RUVBL2 RuvB-like 2 yes no 2 0.00052326 55.04 2 1.4391 1.5131 0.67631 2 Median 1.4391 1.5131 0.67631 2 0 Median NaN NaN NaN 0 0 Median 59951000 25427000 34525000 59951000 25427000 34525000 0 0 0 707 2120 727 1896;1897 2974;2975 2975 1944;1945 0 ALESPERPFLAILGGAK AGGFLMKKELNYFAKALESPERPFLAILGG ESPERPFLAILGGAKVADKIQLINNMLDKV K A L A K V 3 1 0 0 0 0 2 2 0 1 3 1 0 1 2 1 0 0 0 0 0 0 17 1 1767.9883 B4E1H9;V9HWF4;P00558;B4DWQ3;B4DHM5 B4E1H9 110 126 HEL-S-68p;PGK1 Phosphoglycerate kinase;Phosphoglycerate kinase 1 yes no 3 0.0017539 35.757 1 1 0.66753 0.66688 15.574 2 Median 0.66032 0.74451 NaN 1 0 Median 0.67481 0.59733 NaN 1 0 Median 16598000 9838100 6760100 14346000 8689400 5656500 2252200 1148700 1103500 708 1067 728 1898;1899 2976;2977 2976 2 ALESSIAPIVIFASNR EVHMLDIECFTYLHRALESSIAPIVIFASN LESSIAPIVIFASNRGNCVIRGTEDITSPH R A L N R G 3 1 1 0 0 0 1 0 0 3 1 0 0 1 1 3 0 0 0 1 0 0 16 0 1686.9305 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4G5;J3QLR1;H7C4I3 B5BUB1 318 333 RUVBL1 RuvB-like 1 yes no 2 1.576E-09 111.79 2 2 0.92445 0.91285 8.0341 4 Median 0.76917 0.8691 1.3718 2 0 Median 1.1391 0.987 5.4698 2 0 Median 245840000 127670000 118170000 150490000 81908000 68577000 95357000 45760000 49597000 709 1076 729 1900;1901;1902;1903 2978;2979;2980;2981;2982;2983;2984;2985 2985 8 ALESSLWELQALQR ADPYDPGEEDPAQSRALESSLWELQALQRH RALESSLWELQALQRHYHPEVSKAASVINQ R A L Q R H 2 1 0 0 0 2 2 0 0 0 4 0 0 0 0 2 0 1 0 0 0 0 14 0 1642.8679 Q9BVI4 Q9BVI4 430 443 NOC4L Nucleolar complex protein 4 homolog yes yes 2 1.4736E-16 124.42 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6090100 6090100 0 6090100 6090100 0 0 0 0 710 2007 730 1904;1905 2986;2987;2988 2988 3 ALETCGGDLK KLRRKTGYSFVNCKKALETCGGDLKQAEIW VNCKKALETCGGDLKQAEIWLHKEAQKEGW K A L L K Q 1 0 0 1 1 0 1 2 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1062.5016 E5KS95;P43897;C9JG32;C9JT21;F8VPA7;F8VS27;F8WCK2 E5KS95 67 76 TSFM Elongation factor Ts, mitochondrial;Elongation factor Ts yes no 2 0.0156 57.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11052000 0 11052000 11052000 0 11052000 0 0 0 711 1208 731 1906 2989 2989 1 ALETDSVSGVSK NGTANGFSEINSKEKALETDSVSGVSKQSK KEKALETDSVSGVSKQSKKQKL________ K A L S K Q 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 3 1 0 0 2 0 0 12 0 1191.5983 J3QQW9;Q15022;A8K1U9 J3QQW9 698 709 SUZ12 Polycomb protein SUZ12 yes no 2 2.1874E-05 102.52 2 1 1.1396 1.2515 8.344 2 Median 1.1396 1.2515 8.344 2 0 Median NaN NaN NaN 0 0 Median 97376000 46084000 51292000 87770000 46084000 41686000 9606300 0 9606300 712 1336 732 1907;1908;1909 2990;2991;2992;2993;2994;2995 2994 6 ALETLTGALFQRPPLIAAVK VRLHNAIEGGTQLSRALETLTGALFQRPPL TGALFQRPPLIAAVKRQLRVRTIYESKMIE R A L V K R 4 1 0 0 0 1 1 1 0 1 4 1 0 1 2 0 2 0 0 1 0 0 20 1 2108.2358 O60832;C9IYT0;U5UA77;H7C0M1;H7BZF2 O60832 172 191 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2;3 3.6671E-18 121.27 4 4 0.69538 0.70946 27.388 8 Median 0.77137 0.98595 6.4473 4 0 Linear 0.6455 0.55408 4.3866 4 0 Median 856120000 484690000 371430000 669850000 370970000 298880000 186270000 113720000 72553000 713 1398 733 1910;1911;1912;1913;1914;1915;1916;1917 2996;2997;2998;2999;3000;3001;3002;3003;3004;3005;3006;3007;3008;3009;3010 3009 15 ALEYTIYNQELNETR KEELAQYQKWDKMRRALEYTIYNQELNETR ALEYTIYNQELNETRAKLDELSAKRETSGE R A L T R A 1 1 2 0 0 1 3 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 15 0 1855.8952 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 222 236 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 3.0325E-07 106.49 3 2 1.0565 0.96905 7.845 4 Median 0.89039 0.90114 6.174 2 0 Median 1.2166 1.0146 2.4002 2 0 Median 44319000 22268000 22050000 34923000 18031000 16892000 9395700 4237600 5158100 714 803 734 1918;1919;1920;1921;1922 3011;3012;3013;3014;3015;3016;3017;3018 3013 8 ALEYVEAK KQHGTEKDVQAVKAKALEYVEAKSSVLED_ VQAVKAKALEYVEAKSSVLED_________ K A L A K S 2 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 8 0 921.48075 Q14690 Q14690 1858 1865 PDCD11 Protein RRP5 homolog yes yes 2 0.0092533 75.109 2 1 1.2805 1.4079 12.847 3 Plateau 1.2642 1.4047 0.32825 2 0 Median 1.3786 1.1245 NaN 1 0 Median 126100000 57695000 68401000 118270000 54328000 63938000 7830800 3367700 4463100 715 1741 735 1923;1924;1925 3019;3020;3021;3022;3023;3024 3020 6 ALFEEVPELLTEAEK VTGTIGEDEDLIKWKALFEEVPELLTEAEK ALFEEVPELLTEAEKKEWVEKLTEVSISSD K A L E K K 2 0 0 0 0 0 5 0 0 0 3 1 0 1 1 0 1 0 0 1 0 0 15 0 1716.8822 V9HWH7;B2R7P8;P31939;B4DP06;H7C1S2 V9HWH7 510 524 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.00020184 77.593 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10668000 0 10668000 10668000 0 10668000 0 0 0 716 852 736 1926 3025 3025 1 ALFPGDSEIDQLFR FGVPVRTYTHEVTRRALFPGDSEIDQLFRI RALFPGDSEIDQLFRIFRTLGTPDEVVWPG R A L F R I 1 1 0 2 0 1 1 1 0 1 2 0 0 2 1 1 0 0 0 0 0 0 14 0 1606.7991 A0A024RB10;A0A024RB77;G3V5T9;P24941;E7ESI2;B4DDL9;A0A024R8R3;Q00526;K7EJ83 A0A024RB10 167 180 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 yes no 2 3.5632E-06 97.911 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22081000 6843600 15237000 22081000 6843600 15237000 0 0 0 717 318 737 1927;1928 3026;3027 3027 2 ALGEPITLFGEGPAER INVSTDDSEVKACLRALGEPITLFGEGPAE LGEPITLFGEGPAERRERLRNILSVVGTDA R A L E R R 2 1 0 0 0 0 3 3 0 1 2 0 0 1 2 0 1 0 0 0 0 0 16 0 1655.8519 Q6IAP9;Q5T1M7;Q59EL4;O43172;B2R7V4 Q6IAP9 113 128 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 2 0.00029927 55.261 2 0.88854 0.75089 10.663 2 Median NaN NaN NaN 0 0 Median 0.88854 0.75089 10.663 2 0 Median 12499000 6633600 5865300 0 0 0 12499000 6633600 5865300 718 1381 738 1929;1930 3028;3029;3030;3031 3028 4 ALGISHAK EFPQPKNLLNSVIGRALGISHAKDKLVYVH LNSVIGRALGISHAKDKLVYVHTNGPKKKK R A L A K D 2 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 8 0 795.46029 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 36 43 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.038788 58.679 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 719 122 739 1931;1932 3032;3033 3032 2 ALGLDTGQQQDAQEFSK QNSNRRYIDPSGFVKALGLDTGQQQDAQEF GLDTGQQQDAQEFSKLFMSLLEDTLSKQKN K A L S K L 2 0 0 2 0 4 1 2 0 0 2 1 0 1 0 1 1 0 0 0 0 0 17 0 1834.8697 B7ZKR8;B7ZKS3;Q86UV5 B7ZKR8 171 187 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 0.0011511 60.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2359100 2359100 0 2359100 2359100 0 0 0 0 720 1112 740 1933 3034 3034 1 ALGLFSNDIPHVVR ASERRTASALFAGFRALGLFSNDIPHVVRF RALGLFSNDIPHVVRFSALKRRFYVTTCVG R A L V R F 1 1 1 1 0 0 0 1 1 1 2 0 0 1 1 1 0 0 0 2 0 0 14 0 1536.8413 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 19 32 WDR36 WD repeat-containing protein 36 yes no 2;3 9.8639E-07 97.551 3 4 1.1591 1.001 4.9112 7 Median 0.91471 1.035 3.1208 3 0 Plateau 1.2342 1.0174 6.2562 4 0 Median 375860000 188110000 187750000 257040000 136470000 120570000 118820000 51645000 67179000 721 486 741 1934;1935;1936;1937;1938;1939;1940 3035;3036;3037;3038;3039;3040;3041;3042;3043;3044;3045;3046;3047;3048;3049;3050;3051;3052 3050 18 ALGLSTDDAYEELR NARHSDASLTDTVNKALGLSTDDAYEELRQ KALGLSTDDAYEELRQKHEYELNSTPDKKD K A L L R Q 2 1 0 2 0 0 2 1 0 0 3 0 0 0 0 1 1 0 1 0 0 0 14 0 1551.7417 A0A024R363;A0A087X0F1;Q9UK61 A0A024R363 400 413 C3orf63;FAM208A Protein FAM208A no no 2 0.0046626 45.077 1 1.3676 1.1463 NaN 1 Median NaN NaN NaN 0 0 Median 1.3676 1.1463 NaN 1 0 Median 4078000 2097300 1980700 0 0 0 4078000 2097300 1980700 722 129;2105 742 1941 3053 3053 1 ALGLVIR GVLTGSPEQKEEAAKALGLVIRLTSADALR EQKEEAAKALGLVIRLTSADALRPSVVSIT K A L I R L 1 1 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 7 0 740.49086 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2286 2292 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.03153 66.994 1 1.7074 1.7234 NaN 1 Median 1.7074 1.7234 NaN 1 0 Median NaN NaN NaN 0 0 Median 17693000 7432200 10261000 17693000 7432200 10261000 0 0 0 723 1205 743 1942 3054 3054 1 ALGLVTPAGVLLAGPPGCGK TMAILAPVRNPDQFKALGLVTPAGVLLAGP TPAGVLLAGPPGCGKTLLAKAVANESGLNF K A L G K T 3 0 0 0 1 0 0 5 0 0 4 1 0 0 3 0 1 0 0 2 0 0 20 0 1847.0339 B4DLM8;O15381;B4DQJ4 B4DLM8 609 628 NVL Nuclear valosin-containing protein-like yes no 2 2.3818E-06 67.456 2 1.0479 1.0603 NaN 1 Median 1.0479 1.0603 NaN 1 0 Median NaN NaN NaN 0 0 Median 16010000 5052700 10957000 16010000 5052700 10957000 0 0 0 724 997 744 1943;1944 3055;3056;3057 3057 3 ALGPSLPNSQPPPEVYVSLIK GTAEPITVTIVPAYRALGPSLPNSQPPPEV PNSQPPPEVYVSLIKACGGPGNFCPSFSEL R A L I K A 1 0 1 0 0 1 1 1 0 1 3 1 0 0 5 3 0 0 1 2 0 0 21 0 2205.2045 B3KN79;Q15646 B3KN79 159 179 OASL 2-5-oligoadenylate synthase-like protein yes no 2 0.016428 23.362 1 1.0399 0.81354 NaN 1 Median NaN NaN NaN 0 0 Median 1.0399 0.81354 NaN 1 0 Median 3721100 1592100 2129000 0 0 0 3721100 1592100 2129000 725 911 745 1945 3058 3058 1 ALGQNPTNAEVLK GDGKILYSQCGDVMRALGQNPTNAEVLKVL MRALGQNPTNAEVLKVLGNPKSDEMNVKVL R A L L K V 2 0 2 0 0 1 1 1 0 0 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1353.7252 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;F8VPF3;Q6IBG5;F8W1I5;A0A024RB31;B4E368;P14649 F8W1R7 38 50 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 2 3.2767E-29 149.94 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 224270000 0 224270000 213430000 0 213430000 10838000 0 10838000 726 1101 746 1946;1947;1948 3059;3060;3061 3060 3 ALGSAQYEDPR ERDPFTCPGFASQDKALGSAQYEDPRNLHS SQDKALGSAQYEDPRNLHSAGRSSSPAGET K A L P R N 2 1 0 1 0 1 1 1 0 0 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1205.5677 Q9BTC0 Q9BTC0 1694 1704 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0068404 53.683 2 1.697 1.4526 0.90252 2 Median NaN NaN NaN 0 0 Median 1.697 1.4526 0.90252 2 0 Median 8576800 3047400 5529400 0 0 0 8576800 3047400 5529400 727 2002 747 1949;1950 3062;3063 3062 2 ALGTEVIQLFPEK FLGSELACALGRKARALGTEVIQLFPEKGN ARALGTEVIQLFPEKGNMGKILPEYLSNWT R A L E K G 1 0 0 0 0 1 2 1 0 1 2 1 0 1 1 0 1 0 0 1 0 0 13 0 1443.7973 O95831 O95831 325 337 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 1.0221E-08 114.86 1 2 1.7108 1.3959 7.2492 3 Median 1.5958 1.5629 NaN 1 0 Median 1.716 1.3805 1.5697 2 0 Median 34681000 12201000 22480000 22085000 7478300 14607000 12596000 4722700 7873600 728 1431 748 1951;1952;1953 3064;3065;3066;3067;3068;3069 3065 6 ALGTLVSHVTLR PFLSLAACVMPSRLKALGTLVSHVTLRLLK RLKALGTLVSHVTLRLLKPECVLDKSWCQE K A L L R L 1 1 0 0 0 0 0 1 1 0 3 0 0 0 0 1 2 0 0 2 0 0 12 0 1265.7456 E1NZA1;Q92616;A0A024RBS1 E1NZA1 915 926 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.0045424 53.034 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9395600 0 9395600 9395600 0 9395600 0 0 0 729 1205 749 1954 3070 3070 1 ALGTPNNEVWPEVESLQDYK FHGDSEIDQLFRIFRALGTPNNEVWPEVES NNEVWPEVESLQDYKNTFPKWKPGSLASHV R A L Y K N 1 0 2 1 0 1 3 1 0 0 2 1 0 0 2 1 1 1 1 2 0 0 20 0 2288.0961 A0A024QZP7;P06493;Q5H9N4;A0A024QZJ8 A0A024QZP7 219 238 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 2.8877E-07 84.859 2 2 1.2349 1.1271 3.0556 4 Median 1.1302 1.1349 0.70142 2 0 Median 1.3728 1.0949 3.834 2 0 Median 88429000 38059000 50371000 54393000 23398000 30995000 34037000 14661000 19376000 730 25 750 1955;1956;1957;1958 3071;3072;3073;3074;3075;3076;3077 3075 7 ALGVLAQLIWSR MTEMNYYTVLFGVSRALGVLAQLIWSRALG VSRALGVLAQLIWSRALGFPLERPKSMSTE R A L S R A 2 1 0 0 0 1 0 1 0 1 3 0 0 0 0 1 0 1 0 1 0 0 12 0 1325.782 B4DJV2;A0A024RB75;O75390;H0YIC4;Q0QEL2;A0A0C4DGI3;B3KTN4 B4DJV2 416 427 CS Citrate synthase;Citrate synthase, mitochondrial yes no 2 0.0073367 58.699 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1752900 0 1752900 1752900 0 1752900 0 0 0 731 326 751 1959 3078 3078 1 ALIAAQLDNAIEK LSKKVERREKRREEKALIAAQLDNAIEKEL EKALIAAQLDNAIEKELLERLKQDTYGDIY K A L E K E 4 0 1 1 0 1 1 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1368.7613 Q9BXY0 Q9BXY0 152 164 MAK16 Protein MAK16 homolog yes yes 2 1.5567E-19 149.23 2 2 1.0819 1.0407 3.0342 4 Median 0.93571 1.0649 1.2024 2 0 Median 1.2375 1.0144 1.579 2 0 Median 374430000 197410000 177020000 313770000 170010000 143760000 60660000 27396000 33264000 732 2016 752 1960;1961;1962;1963 3079;3080;3081;3082;3083;3084;3085;3086 3080 8 ALIAAQYSGAQVR AGTLYTYPENWRAFKALIAAQYSGAQVRVL FKALIAAQYSGAQVRVLSAPPHFHFGQTNR K A L V R V 4 1 0 0 0 2 0 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 13 0 1346.7306 Q53YD7;P26641;B4DUK7;Q2F838;B4DSR4 Q53YD7 18 30 EEF1G Elongation factor 1-gamma yes no 2 8.9529E-06 121.83 2 2.2805 2.5896 5.3213 2 Median 2.2805 2.5896 5.3213 2 0 Median NaN NaN NaN 0 0 Median 139260000 43007000 96252000 139260000 43007000 96252000 0 0 0 733 1522 753 1964;1965 3087;3088;3089;3090 3087 4 ALIAGGGAPEIELALR IHDALCVIRCLVKKRALIAGGGAPEIELAL LIAGGGAPEIELALRLTEYSRTLSGMESYC R A L L R L 4 1 0 0 0 0 2 3 0 2 3 0 0 0 1 0 0 0 0 0 0 0 16 0 1549.8828 B7Z9L0;A8K3C3;P50991;B7Z2F4;B7Z2Z8 B7Z9L0 364 379 CCT4 T-complex protein 1 subunit delta yes no 2 3.3718E-06 89.403 2 2 2.1338 2.0132 49.611 4 Median 2.8398 2.9972 2.8479 2 0 Median 1.5116 1.2785 10.788 2 0 Median 60513000 16531000 43982000 46133000 10876000 35257000 14380000 5654900 8725200 734 721 754 1966;1967;1968;1969 3091;3092;3093;3094 3094 3 ALIEMEK AQPGSFEYEYAMRWKALIEMEKQQQDQVDR YEYAMRWKALIEMEKQQQDQVDRNIKEARE K A L E K Q 1 0 0 0 0 0 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 7 0 832.43644 A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9JYS8 A8K525 273 279 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.021895 57.281 1 2.047 2.2009 NaN 1 Median 2.047 2.2009 NaN 1 0 Median NaN NaN NaN 0 0 Median 38836000 11986000 26849000 38836000 11986000 26849000 0 0 0 735 573 755 1970 3095 3095 425 1 ALIETYQK EINSSDSINIETEEKALIETYQKEISPYEN NIETEEKALIETYQKEISPYENKMGKTCNS K A L Q K E 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 8 0 964.52295 Q8NG31;H0YCZ2 Q8NG31 1763 1770 CASC5 Protein CASC5 yes no 2 0.032325 50.703 2 1.4104 1.1277 7.0638 2 Median NaN NaN NaN 0 0 Median 1.4104 1.1277 7.0638 2 0 Median 4578200 1825200 2753000 0 0 0 4578200 1825200 2753000 736 1928 756 1971;1972 3096;3097 3096 2 ALIGQEGDPDLK GKKLIIVASQAMRYRALIGQEGDPDLKLPD RYRALIGQEGDPDLKLPDFSYCILERLGRS R A L L K L 1 0 0 2 0 1 1 2 0 1 2 1 0 0 1 0 0 0 0 0 0 0 12 0 1254.6456 Q6AHZ7;Q12789 Q6AHZ7 161 172 DKFZp686A111;GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 7.084E-18 143.04 2 0.75094 0.80772 NaN 1 Median 0.75094 0.80772 NaN 1 0 Median NaN NaN NaN 0 0 Median 54988000 16624000 38364000 54988000 16624000 38364000 0 0 0 737 1699 757 1973;1974 3098;3099;3100 3099 3 ALILSPTR MFERLKTHSAQTGARALILSPTRELALQTL SAQTGARALILSPTRELALQTLKFTKELGK R A L T R E 1 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 8 0 869.53345 Q8TDD1;F8VRX4 Q8TDD1 169 176 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.0037942 94.407 4 0.96043 0.99106 3.0247 3 Median 0.96043 0.99106 3.0247 3 0 Median NaN NaN NaN 0 0 Median 143990000 70967000 73022000 143990000 70967000 73022000 0 0 0 738 1933 758 1975;1976;1977;1978 3101;3102;3103;3104;3105 3105 5 ALIPLALEGTDVGQTK EVEDRGTVVAQGGGRALIPLALEGTDVGQT LIPLALEGTDVGQTKAAQALAKLTITSNPE R A L T K A 2 0 0 1 0 1 1 2 0 1 3 1 0 0 1 0 2 0 0 1 0 0 16 0 1624.9036 Q9H3U1 Q9H3U1 692 707 UNC45A Protein unc-45 homolog A yes yes 2 2.5199E-05 85.672 1 1.9277 1.9549 NaN 1 Median 1.9277 1.9549 NaN 1 0 Median NaN NaN NaN 0 0 Median 12892000 4724700 8167400 12892000 4724700 8167400 0 0 0 739 2029 759 1979 3106 3106 1 ALIVEPSR NAQVTQTKFLPNAPKALIVEPSRELAEQTL FLPNAPKALIVEPSRELAEQTLNNIKQFKK K A L S R E 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 8 0 883.51272 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 208 215 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.010952 76.035 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42911000 42911000 0 42911000 42911000 0 0 0 0 740 452 760 1980 3107 3107 1 ALIVLAHSER ______________________________ MVGRRALIVLAHSERTSFNYAMKEAAAAAL R A L E R T 2 1 0 0 0 0 1 0 1 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1107.64 B4DLR8;Q3B792;H3BRK3;P15559;Q53G81 B4DLR8 6 15 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2;3 7.8785E-05 98.033 4 4.5988 5.0218 7.745 3 Median 4.5988 5.0218 7.745 3 0 Median NaN NaN NaN 0 0 Median 145180000 18050000 127130000 145180000 18050000 127130000 0 0 0 741 1000 761 1981;1982;1983;1984 3108;3109;3110;3111;3112;3113;3114 3112 7 ALIVVPYAEGVIPDEAK AVVAQHLTNTVFVDRALIVVPYAEGVIPDE IVVPYAEGVIPDEAKALSLLAPANAVAGLL R A L A K A 3 0 0 1 0 0 2 1 0 2 1 1 0 0 2 0 0 0 1 3 0 0 17 0 1782.9768 Q05519;Q05BU6;Q6PJY9;Q6PKC9;Q5T760;Q6PJB9 Q05519 104 120 SRSF11;SFRS11 Serine/arginine-rich splicing factor 11 yes no 2 0.00015155 64.199 3 2 0.49373 0.39035 3.5584 2 Median NaN NaN NaN 0 0 Median 0.49373 0.39035 3.5584 2 0 Median 16736000 4428000 12308000 9871100 0 9871100 6865200 4428000 2437200 742 1684 762 1985;1986;1987;1988;1989 3115;3116;3117;3118;3119 3119 5 ALIVVQQGMTPSAK IKVYCQRMQEENITRALIVVQQGMTPSAKQ RALIVVQQGMTPSAKQLVPEHVVMTKEEVT R A L A K Q 2 0 0 0 0 2 0 1 0 1 1 1 1 0 1 1 1 0 0 2 0 0 14 0 1441.7963 A0A087WVZ9;E5KT65;P19388;B4DJ89;A0A087WWX0;A0A0A0MQR7;A0A087WVN5 A0A087WVZ9 102 115 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 2 0.00018912 84.17 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 743 423 763 1990;1991;1992;1993 3120;3121;3122;3123 3120 311 4 ALLAVIGADSVTLK EGAKSQEDTEAVFKKALLAVIGADSVTLKN KALLAVIGADSVTLKNKYLDWAYRSGGYKK K A L L K N 3 0 0 1 0 0 0 1 0 1 3 1 0 0 0 1 1 0 0 2 0 0 14 0 1369.8181 B3KQ21;Q9NYH9;B3KX32;Q9P1J8 B3KQ21 464 477 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 4.5577E-15 136.48 2 2 1.2093 1.1443 11.266 4 Median 0.94166 1.0295 6.3085 2 0 Median 1.5443 1.2365 2.3297 2 0 Median 123540000 57437000 66103000 80885000 40908000 39978000 42655000 16530000 26125000 744 925 764 1994;1995;1996;1997 3124;3125;3126;3127;3128;3129;3130;3131 3125 8 ALLDASETTSTR NRKVEQLQQEYTEMKALLDASETTSTRKIK EMKALLDASETTSTRKIKEEEKRVNSKFDT K A L T R K 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 2 3 0 0 0 0 0 12 0 1263.6307 Q14258;Q59GW5;D3DTY9 Q14258 250 261 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 2 1.3553E-05 106.4 2 1 1.7599 1.9236 37.925 3 Plateau 1.7178 1.8513 14.103 2 0 Median 1.1757 0.98227 NaN 1 0 Median 87526000 33629000 53897000 84176000 31940000 52236000 3350000 1689400 1660600 745 1731;1802 765 1998;1999;2000 3132;3133;3134;3135;3136 3135 5 ALLDLCAAPGGWLQVAAK LIQLNRRFQFLQKARALLDLCAAPGGWLQV DLCAAPGGWLQVAAKFMPVSSLIVGVDLVP R A L A K F 5 0 0 1 1 1 0 2 0 0 4 1 0 0 1 0 0 1 0 1 0 0 18 0 1852.9869 Q8IY81;J3KS36;J3QSE2 Q8IY81 47 64 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 9.4323E-06 115.29 1 0.80217 0.81754 NaN 1 Median 0.80217 0.81754 NaN 1 0 Median NaN NaN NaN 0 0 Median 17052000 8661800 8390100 17052000 8661800 8390100 0 0 0 746 1898 766 2001 3137 3137 1 ALLDYGVTADAR EYNARLFGLAQRSARALLDYGVTADARALL SARALLDYGVTADARALLAGQRHLLTAQDE R A L A R A 3 1 0 2 0 0 0 1 0 0 2 0 0 0 0 0 1 0 1 1 0 0 12 0 1263.6459 Q00653;A0A1P8C958 Q00653 460 471 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2 0.00019656 91.549 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16931000 0 16931000 16931000 0 16931000 0 0 0 747 1674 767 2002;2003 3138;3139 3139 2 ALLEAGALPNAPNSYGR WLATAAARGRVEEVRALLEAGALPNAPNSY LEAGALPNAPNSYGRRPIQVMMMGSARVAE R A L G R R 4 1 2 0 0 0 1 2 0 0 3 0 0 0 2 1 0 0 1 0 0 0 17 0 1712.8846 J3QRG6;K7PML8;P42771;D1LYX3;R9S252;Q2MJK0;Q208B5;G3XAG3 J3QRG6 30 46 CDKN2A;p16ink4a Cyclin-dependent kinase inhibitor 2A yes no 2 3.8252E-10 105.03 2 2 1.5325 1.3313 33.812 3 Median 2.2315 2.2805 NaN 1 0 Median 1.49 1.2756 6.0409 2 0 Median 58018000 13540000 44479000 48968000 10162000 38806000 9050600 3378100 5672400 748 1339 768 2004;2005;2006;2007 3140;3141;3142;3143;3144 3141 5 ALLELQLEPEELYQTFQR AERIKPVLMMNKMDRALLELQLEPEELYQT ELQLEPEELYQTFQRIVENVNVIISTYGEG R A L Q R I 1 1 0 0 0 3 4 0 0 0 5 0 0 1 1 0 1 0 1 0 0 0 18 0 2219.1474 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 163 180 EEF2 Elongation factor 2 yes no 2 6.9817E-12 107.37 2 3.2633 3.686 5.3176 2 Median 3.2633 3.686 5.3176 2 0 Median NaN NaN NaN 0 0 Median 229150000 59456000 169700000 229150000 59456000 169700000 0 0 0 749 1478 769 2008;2009 3145;3146;3147 3145 3 ALLETASPR RTPRRPRSARAGARRALLETASPRKLSGQT RAGARRALLETASPRKLSGQTRTIARGRSH R A L P R K 2 1 0 0 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 9 0 956.5291 H3BTR4;B3KPB2;Q96BT3;H3BUW2;A8K662;H3BQJ0;I3L4F8;H3BMP6;H3BQS6;H3BN05;H3BTS2 H3BTR4 41 49 CENPT Centromere protein T yes no 2 0.0019479 78.77 1 1 1.2638 1.222 11.637 2 Median 1.0427 1.1255 NaN 1 0 Median 1.5318 1.3268 NaN 1 0 Median 28423000 12478000 15946000 26444000 11749000 14695000 1979400 728500 1250900 750 920 770 2010;2011 3148;3149 3148 2 ALLEVVQSGGK EAIETDDLTIKLVIKALLEVVQSGGKNIEL LVIKALLEVVQSGGKNIELAVMRRDQSLKI K A L G K N 1 0 0 0 0 1 1 2 0 0 2 1 0 0 0 1 0 0 0 2 0 0 11 0 1099.6237 Q05DH1;A0A0K0K1K4;O14818;B0YJ74;A0A087WYS6;Q8TAA3 Q05DH1 194 204 PSMA7;PSMA8 Proteasome subunit alpha type;Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 2 0.0019655 79.148 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8388900 0 8388900 8388900 0 8388900 0 0 0 751 539 771 2012 3150 3150 1 ALLFIPR LAVKHFSVEGQLEFRALLFIPRRAPFDLFE VEGQLEFRALLFIPRRAPFDLFENKKKKNN R A L P R R 1 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 7 0 828.52216 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50 B4DMA2 293 299 HSP90AB1 Heat shock protein HSP 90-beta yes no 2 0.014977 99.511 2 2.1247 2.4855 0.35551 2 Median 2.1247 2.4855 0.35551 2 0 Median NaN NaN NaN 0 0 Median 577130000 183680000 393460000 577130000 183680000 393460000 0 0 0 752 379 772 2013;2014 3151;3152;3153;3154 3154 4 ALLFVPR LAVKHFSVEGQLEFRALLFVPRRAPFDLFE VEGQLEFRALLFVPRRAPFDLFENRKKKNN R A L P R R 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 7 0 814.50651 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 339 345 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2 0.019831 94.669 2 3.1854 3.5721 6.8209 2 Median 3.1854 3.5721 6.8209 2 0 Median NaN NaN NaN 0 0 Median 140580000 33393000 107190000 140580000 33393000 107190000 0 0 0 753 1348 773 2015;2016 3155;3156;3157 3156 3 ALLGGNVR YDAPLCNLLLFKKVKALLGGNVRMMLSGGG LLFKKVKALLGGNVRMMLSGGGPLSPQTHR K A L V R M 1 1 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 798.47119 Q8TAF6;O60488;B4DH39;H0Y9A0 Q8TAF6 389 396 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.038017 48.115 1 1.2093 1.2742 NaN 1 Median 1.2093 1.2742 NaN 1 0 Median NaN NaN NaN 0 0 Median 23266000 9201600 14064000 23266000 9201600 14064000 0 0 0 754 1394 774 2017 3158 3158 1 ALLGSVK PNILVDDTLPSEVGKALLGSVKDSIVQGFQ TLPSEVGKALLGSVKDSIVQGFQWGTREGP K A L V K D 1 0 0 0 0 0 0 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 7 0 686.43268 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2;K7EP67;K7EJ74 B4DZB1 708 714 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.02938 74.415 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30919000 0 30919000 30919000 0 30919000 0 0 0 755 794 775 2018;2019 3159;3160 3160 2 ALLHQLESLAK VAIFTLMVEINKKGKALLHQLESLAKDHRM KKGKALLHQLESLAKDHRMKLMQQQQEVAG K A L A K D 2 0 0 0 0 1 1 0 1 0 4 1 0 0 0 1 0 0 0 0 0 0 11 0 1221.7081 A0A024R784;O15164;B4DYZ9 A0A024R784 326 336 TRIM24 Transcription intermediary factor 1-alpha yes no 2 0.02814 39.848 1 1.3073 1.1337 NaN 1 Median NaN NaN NaN 0 0 Median 1.3073 1.1337 NaN 1 0 Median 1354000 464000 890010 0 0 0 1354000 464000 890010 756 217 776 2020 3161 3161 1 ALLLAQWAWQEGSVTR FDLSPDNEVLVTASRALLLAQWAWQEGSVT LLLAQWAWQEGSVTRLWKAIHTAPVATMAF R A L T R L 3 1 0 0 0 2 1 1 0 0 3 0 0 0 0 1 1 2 0 1 0 0 16 0 1827.9632 Q12788 Q12788 87 102 TBL3 Transducin beta-like protein 3 yes yes 2 1.2655E-06 96.103 1 2 1.1226 0.96575 11.459 3 Median 0.86877 0.90236 NaN 1 0 Median 1.2337 1.0439 11.004 2 0 Median 25233000 12763000 12469000 10424000 5783000 4640700 14809000 6980200 7828800 757 1698 777 2021;2022;2023 3162;3163;3164;3165;3166 3164 5 ALLLSHQFK AAVEYYIKHQNRQLRALLLSHQFKRREADQ QNRQLRALLLSHQFKRREADQTHAQNFSSA R A L F K R 1 0 0 0 0 1 0 0 1 0 3 1 0 1 0 1 0 0 0 0 0 0 9 0 1055.6128 H0Y4R5;Q5SNT2 H0Y4R5 94 102 TMEM201 Transmembrane protein 201 yes no 2 0.018672 51.854 1 0.98963 1.0288 NaN 1 Median 0.98963 1.0288 NaN 1 0 Median NaN NaN NaN 0 0 Median 11485000 7079300 4405600 11485000 7079300 4405600 0 0 0 758 1283 778 2024 3167 3167 1 ALLNLPGTQTSGEAK EDKRRRRRRREKRKRALLNLPGTQTSGEAK ALLNLPGTQTSGEAKDGPPKKQVCGDSIKP R A L A K D 2 0 1 0 0 1 1 2 0 0 3 1 0 0 1 1 2 0 0 0 0 0 15 0 1498.7991 Q96GM8;B3KSC7 Q96GM8 348 362 TOE1 Target of EGR1 protein 1 yes no 2 0.00073709 51.092 1 0.87023 0.90874 NaN 1 Median 0.87023 0.90874 NaN 1 0 Median NaN NaN NaN 0 0 Median 10942000 5528600 5413200 10942000 5528600 5413200 0 0 0 759 1968 779 2025 3168;3169 3169 2 ALLPLELQDDGSDSRK VNTPAGSSQKAREEKALLPLELQDDGSDSR LLPLELQDDGSDSRKSMRQSTAEHTRQTFL K A L R K S 1 1 0 3 0 1 1 1 0 0 4 1 0 0 1 2 0 0 0 0 0 0 16 1 1755.9003 Q15906;B4DMP5 Q15906 116 131 VPS72 Vacuolar protein sorting-associated protein 72 homolog yes no 3 0.0089607 23.839 1 0.75784 0.8693 NaN 1 Median 0.75784 0.8693 NaN 1 0 Median NaN NaN NaN 0 0 Median 26586000 14545000 12040000 26586000 14545000 12040000 0 0 0 760 1767 780 2026 3170 3170 1 ALLPWLLEQR QVLQKLAKEIGSTNRALLPWLLEQRHKHNK GSTNRALLPWLLEQRHKHNKACCPLEGVRP R A L Q R H 1 1 0 0 0 1 1 0 0 0 4 0 0 0 1 0 0 1 0 0 0 0 10 0 1237.7183 F2Z2W7;Q8IZ69;B4E213 F2Z2W7 208 217 TRMT2A tRNA (uracil-5-)-methyltransferase homolog A yes no 2 0.0097241 57.859 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 761 1254 781 2027 3171 3171 1 ALLQAILQTEDMLK NGVTDGYLNSLCTVRALLQAILQTEDMLKV RALLQAILQTEDMLKVYEARLTEEETVCLD R A L L K V 2 0 0 1 0 2 1 0 0 1 4 1 1 0 0 0 1 0 0 0 0 0 14 0 1585.8749 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 772 785 DSP;DSP variant protein Desmoplakin yes no 2 1.4603E-05 96.113 2 0.56832 0.57338 NaN 1 Median 0.56832 0.57338 NaN 1 0 Median NaN NaN NaN 0 0 Median 18101000 8138400 9962700 18101000 8138400 9962700 0 0 0 762 1486 782 2028;2029 3172;3173;3174 3173 1247 3 ALLQDSAPQPALPQVQIPFPR YPFPPNPDMNPELRKALLQDSAPQPALPQV APQPALPQVQIPFPRRSRRLSKEGILPPSA K A L P R R 3 1 0 1 0 4 0 0 0 1 3 0 0 1 5 1 0 0 0 1 0 0 21 0 2285.2532 A0A1C7CYX1;A0A0A0MSU2;A0PJD3;A0A024R689;Q6PJG2;H7C1L3 A0A1C7CYX1 324 344 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 2 0.0051857 26.541 1 0.50863 0.5134 NaN 1 Median 0.50863 0.5134 NaN 1 0 Median NaN NaN NaN 0 0 Median 5793900 3590600 2203300 5793900 3590600 2203300 0 0 0 763 638 783 2030 3175 3175 1 ALLQEFDNAVLSK QMMIDEFNKQSNAFKALLQEFDNAVLSKEN FKALLQEFDNAVLSKENHMQGKLNEKEKMI K A L S K E 2 0 1 1 0 1 1 0 0 0 3 1 0 1 0 1 0 0 0 1 0 0 13 0 1446.7718 H7BYN4;Q02241 H7BYN4 524 536 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 9.2428E-21 136.48 1 2 1.0461 0.97392 10.124 2 Median 0.86281 0.90664 NaN 1 0 Median 1.2682 1.0462 NaN 1 0 Median 71568000 37752000 33816000 34930000 17649000 17281000 36638000 20103000 16535000 764 1312 784 2031;2032;2033 3176;3177;3178 3177 3 ALLQEQFR GGGVTRVEGGFDQYRALLQEQFRREGFL__ GGFDQYRALLQEQFRREGFL__________ R A L F R R 1 1 0 0 0 2 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 1003.5451 B4DRU9;A0A0S2Z5L1;Q9NUQ8 B4DRU9 656 663 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 0.0088194 79.469 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11762000 0 11762000 11762000 0 11762000 0 0 0 765 583 785 2034 3179 3179 1 ALLQQQPEDDSK TAIKRNENMAKGLQRALLQQQPEDDSKRSP LQRALLQQQPEDDSKRSPRPQDLIRLYDII R A L S K R 1 0 0 2 0 3 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 12 0 1370.6678 Q9UHB9;B4DVI7;Q96K98;Q96K97 Q9UHB9 405 416 SRP68 Signal recognition particle subunit SRP68 yes no 2 5.6231E-13 134.23 3 2 1.442 1.124 11.226 3 Median 1.0529 1.0543 NaN 1 0 Median 1.5445 1.2142 10.917 2 0 Median 19552000 12392000 7159800 13089000 9776800 3311800 6463100 2615000 3848000 766 2101 786 2035;2036;2037;2038;2039 3180;3181;3182;3183;3184;3185;3186 3181 7 ALLQSSASR DLYKSEMEVQDAELKALLQSSASRKTQ___ QDAELKALLQSSASRKTQ____________ K A L S R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 0 0 9 0 931.50869 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08 A8K6Y1 356 364 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.0017517 90.601 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2466400 2466400 0 2466400 2466400 0 0 0 0 767 328 787 2040;2041 3187;3188 3188 2 ALLSASPEVVVAVGFPGAGK RTVSRSGPLCLPESRALLSASPEVVVAVGF SPEVVVAVGFPGAGKSTFLKKHLVSAGYVH R A L G K S 4 0 0 0 0 0 1 3 0 0 2 1 0 1 2 2 0 0 0 4 0 0 20 0 1868.0407 M0R3C8;A0A0D9SFL2;M0QYH2;A0A1S5RA93;Q96T60;A0A0D9SFD6 M0R3C8 359 378 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 1.4364E-06 74.392 2 0.50875 0.51258 20.997 2 Median 0.50875 0.51258 20.997 2 0 Median NaN NaN NaN 0 0 Median 13980000 8664800 5314800 13980000 8664800 5314800 0 0 0 768 526 788 2042;2043 3189;3190;3191;3192 3190 4 ALLTQFET TEAAKAAKQLTPEVRALLTQFET_______ QLTPEVRALLTQFET_______________ R A L E T - 1 0 0 0 0 1 1 0 0 0 2 0 0 1 0 0 2 0 0 0 0 0 8 0 921.48075 Q96N64 Q96N64 748 755 PWWP2A PWWP domain-containing protein 2A yes yes 1 0.0093042 87.754 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1242000 0 0 0 0 0 1242000 0 0 769 1980 789 2044 3193 3193 1 ALLTTNQLPQPDVFPLFK ALWDQLLEGRIKLQKALLTTNQLPQPDVFP TTNQLPQPDVFPLFKDKGGPEFSSALKNSH K A L F K D 1 0 1 1 0 2 0 0 0 0 4 1 0 2 3 0 2 0 0 1 0 0 18 0 2041.1248 Q9NY61 Q9NY61 247 264 AATF Protein AATF yes yes 2 2.6525E-06 85.522 2 0.94862 1.0662 0.28363 2 Median 0.94862 1.0662 0.28363 2 0 Median NaN NaN NaN 0 0 Median 189970000 99585000 90386000 189970000 99585000 90386000 0 0 0 770 2080 790 2045;2046 3194;3195;3196;3197;3198 3196 5 ALLVQVVNK TVAHELLCNKPEEEKALLVQVVNKLGDPQN KPEEEKALLVQVVNKLGDPQNRIATKASHL K A L N K L 1 0 1 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 3 0 0 9 0 982.61752 B2R5U7;Q03701 B2R5U7 382 390 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.00078426 94.407 1 1.2726 1.008 NaN 1 Median NaN NaN NaN 0 0 Median 1.2726 1.008 NaN 1 0 Median 4910200 2097500 2812800 0 0 0 4910200 2097500 2812800 771 836;1683 791 2047 3199;3200 3200 2 ALMDLLQLTR HTMLGSPEQPGVIPRALMDLLQLTREEGAE GVIPRALMDLLQLTREEGAEGRPWALSVTM R A L T R E 1 1 0 1 0 1 0 0 0 0 4 0 1 0 0 0 1 0 0 0 0 0 10 0 1172.6587 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 150 159 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.011074 62.823 2 5 1.2698 1.153 31.962 4 Median 1.0691 1.0549 NaN 1 0 Median 1.5726 1.3399 39.144 3 0 Plateau 27412000 9472900 17939000 17573000 5737500 11835000 9839800 3735400 6104300 772 1745 792;793 2048;2049;2050;2051;2052;2053;2054 3201;3202;3203;3204;3205;3206;3207;3208 3207 1596 6 ALNEQIAR NVDAFKLESLEAKNRALNEQIARLEQEREK SLEAKNRALNEQIARLEQEREKEPNRLESL R A L A R L 2 1 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 913.49813 A8K031;O14777;Q05DQ6 A8K031 274 281 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.012238 68.081 1 1 1.0847 1.0561 11.773 2 Median 0.88842 0.97176 NaN 1 0 Median 1.3244 1.1478 NaN 1 0 Median 36511000 15955000 20556000 34481000 15159000 19322000 2029700 795830 1233800 773 696 794 2055;2056 3209;3210 3209 2 ALNFGLGR YTKHQIRQMEMKILRALNFGLGRPLPLHFL MEMKILRALNFGLGRPLPLHFLRRASKIGE R A L G R P 1 1 1 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 846.47119 P14635;E9PC90;H1UBN2;H0YA62;Q9BWU8;Q9BWV0;Q9BWU9;Q9BPX9 P14635 292 299 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 5.2522E-06 148.28 1 0.87082 0.95199 NaN 1 Median 0.87082 0.95199 NaN 1 0 Median NaN NaN NaN 0 0 Median 30442000 15859000 14583000 30442000 15859000 14583000 0 0 0 774 1483 795 2057 3211;3212 3211 2 ALNFGLGRPLPLHFLR YTKHQIRQMEMKILRALNFGLGRPLPLHFL LNFGLGRPLPLHFLRRASKIGEVDVEQHTL R A L L R R 1 2 1 0 0 0 0 2 1 0 5 0 0 2 2 0 0 0 0 0 0 0 16 1 1820.0573 P14635;E9PC90;H1UBN2;H0YA62;Q9BWU8;Q9BWV0;Q9BWU9;Q9BPX9 P14635 292 307 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 3;4 0.00011613 49.482 1 3 0.98798 1.002 9.3953 4 Linear 0.73042 0.78364 NaN 1 0 Median 1.0425 0.9816 6.7226 3 0 Plateau 136630000 66933000 69700000 16015000 7594500 8420200 120620000 59339000 61280000 775 1483 796 2058;2059;2060;2061 3213;3214;3215;3216;3217 3216 5 ALNHEIEELEK IKLQEELSENDKKIKALNHEIEELEKRKDK KKIKALNHEIEELEKRKDKETGGILRSLED K A L E K R 1 0 1 0 0 0 4 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1323.667 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q7Z2X1;Q5T821 A0A024R158 276 286 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 7.111E-41 194.17 4 4 1.2845 1.266 18.591 8 Median 0.87901 1.0367 5.9596 4 0 Median 1.7752 1.4776 0.95216 4 0 Linear 1604900000 838140000 766790000 1465500000 789950000 675500000 139470000 48181000 91293000 776 69 797 2062;2063;2064;2065;2066;2067;2068;2069 3218;3219;3220;3221;3222;3223;3224;3225;3226;3227;3228;3229;3230;3231 3218 14 ALNILQSTNMAFGK GMKALVTLSSGDMRRALNILQSTNMAFGKV RALNILQSTNMAFGKVTEETVYTCTGHPLK R A L G K V 2 0 2 0 0 1 0 1 0 1 2 1 1 1 0 1 1 0 0 0 0 0 14 0 1506.7864 Q6LES9;A8K3S0;Q59GW7;P40937;A8K4Z2 Q6LES9 216 229 RFC5 Replication factor C subunit 5 yes no 2 0.00057664 67.726 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8349500 8349500 0 8349500 8349500 0 0 0 0 777 726 798 2070 3232;3233 3232 561 2 ALNLAFR ENRRHPASYLVHGGKALNLAFRAWTRKEAL SYLVHGGKALNLAFRAWTRKEALPDHEDEI K A L F R A 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 803.46537 H0Y3N9;Q9UPP1;A0A024R9Y4;H0Y589;H0Y7M8;H7BZB7 H0Y3N9 303 309 PHF8 Histone lysine demethylase PHF8 yes no 2 0.0099923 121.87 2 0.59747 0.62122 10.18 2 Median 0.59747 0.62122 10.18 2 0 Median NaN NaN NaN 0 0 Median 42816000 26537000 16280000 42816000 26537000 16280000 0 0 0 778 1279 799 2071;2072 3234;3235 3235 2 ALNMAIPGGPK NYFYLFDLKAFFTSKALNMAIPGGPKFEPL FTSKALNMAIPGGPKFEPLVRDINLQDEDW K A L P K F 2 0 1 0 0 0 0 2 0 1 1 1 1 0 2 0 0 0 0 0 0 0 11 0 1067.5798 Q6P2Q9;I3L0J9 Q6P2Q9 268 278 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0004098 72.038 2 1.0515 1.0839 0.83525 2 Median 1.0515 1.0839 0.83525 2 0 Median NaN NaN NaN 0 0 Median 54960000 26934000 28027000 54960000 26934000 28027000 0 0 0 779 1854 800 2073;2074 3236;3237;3238 3237 1704 3 ALNTLSSPGQSSFSHGTR IPGKTILENSVKHSKALNTLSSPGQSSFSH TLSSPGQSSFSHGTRNNSAKENMEKEKPVK K A L T R N 1 1 1 0 0 1 0 2 1 0 2 0 0 1 1 5 2 0 0 0 0 0 18 0 1845.8969 Q8WWQ0;Q9NWP3 Q8WWQ0 1554 1571 PHIP PH-interacting protein yes no 2;3 5.627E-40 123.14 4 3 1.3988 1.1862 37.066 5 Median 0.57226 0.62134 6.6005 2 0 Median 1.4269 1.2103 2.9873 3 0 Median 292460000 152410000 140050000 232690000 128000000 104690000 59774000 24412000 35363000 780 1942 801 2075;2076;2077;2078;2079;2080;2081 3239;3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250;3251 3240 13 ALNVVQSVLQINLSNSTNR KKTAEEEELAEEKKKALNVVQSVLQINLSN VQSVLQINLSNSTNRGSVAAKKFKDIIHYD K A L N R G 1 1 4 0 0 2 0 0 0 1 3 0 0 0 0 3 1 0 0 3 0 0 19 0 2069.1229 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50 A0A024R250 921 939 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 6.2285E-17 120.53 2 1.0689 1.0702 7.6186 2 Median 1.0689 1.0702 7.6186 2 0 Median NaN NaN NaN 0 0 Median 28341000 11856000 16484000 28341000 11856000 16484000 0 0 0 781 104 802 2082;2083 3252;3253;3254;3255 3252 4 ALPASETPK AKSPNPSTPRGKKRKALPASETPKAAESET RGKKRKALPASETPKAAESETPGKSPEKKP K A L P K A 2 0 0 0 0 0 1 0 0 0 1 1 0 0 2 1 1 0 0 0 0 0 9 0 912.49165 O76021;J3QSV6;A0PJ61;Q32Q62 O76021 409 417 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.002124 76.478 2 2 0.66666 0.65942 15.069 4 Median 0.63607 0.75096 0.51948 2 0 Median 0.703 0.57852 0.64568 2 0 Median 957960000 572280000 385680000 889980000 532570000 357410000 67981000 39709000 28271000 782 1415 803 2084;2085;2086;2087 3256;3257;3258;3259;3260;3261 3256 6 ALPAVQQNNLDEDLIRK DAAELVALAQAVNARALPAVQQNNLDEDLI PAVQQNNLDEDLIRKLAYVAAGDLAPINAF R A L R K L 2 1 2 2 0 2 1 0 0 1 3 1 0 0 1 0 0 0 0 1 0 0 17 1 1936.0378 A0A024R1A3;P22314 A0A024R1A3 369 385 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 3 0.0026021 43.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7515100 0 7515100 7515100 0 7515100 0 0 0 783 74 804 2088 3262 3262 1 ALPEFFNGK ASWFDYNCIHVIERRALPEFFNGKNKSKTP HVIERRALPEFFNGKNKSKTPEIYLAYRNF R A L G K N 1 0 1 0 0 0 1 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 9 0 1021.5233 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 470 478 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 0.00017704 107.32 2 0.74855 0.78378 0.15212 2 Median 0.74855 0.78378 0.15212 2 0 Median NaN NaN NaN 0 0 Median 71358000 41354000 30004000 71358000 41354000 30004000 0 0 0 784 1798;321 805 2089;2090 3263;3264;3265;3266;3267 3265 5 ALPFWNEEIVPQIK DQLPSCESLKDTIARALPFWNEEIVPQIKE RALPFWNEEIVPQIKEGKRVLIAAHGNSLR R A L I K E 1 0 1 0 0 1 2 0 0 2 1 1 0 1 2 0 0 1 0 1 0 0 14 0 1682.9032 B4DMJ7;B4DKL5;Q6P6D7;Q6FHU2;Q6FHK8;Q53G35;P18669;B7ZW15;B7Z9E5;B4DJA4;A4D2J6;P15259;Q8N0Y7 B4DMJ7 38 51 hCG_2015269;PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase;Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 2 0.00030436 81.017 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6208600 0 6208600 6208600 0 6208600 0 0 0 785 991 806 2091 3268 3268 1 ALPLIVGAQLIHADK ______________________________ ALPLIVGAQLIHADKLGEKVEDSTMPIRRT K A L D K L 3 0 0 1 0 1 0 1 1 2 3 1 0 0 1 0 0 0 0 1 0 0 15 0 1557.9243 Q5SSJ5;X6RGJ2;B0QZK9;B0QZK8 Q5SSJ5 15 29 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2;3 1.2549E-05 106.67 4 5 0.68195 0.7291 10.57 7 Median 0.65839 0.73531 2.2658 4 0 Median 0.76814 0.64586 6.5355 3 0 Plateau 499510000 293350000 206150000 342130000 202000000 140130000 157380000 91358000 66023000 786 1817 807 2092;2093;2094;2095;2096;2097;2098;2099;2100 3269;3270;3271;3272;3273;3274;3275;3276;3277;3278;3279;3280;3281;3282;3283;3284 3282 16 ALPLPHFDTINLPEK KKIKELQKGEVPKFKALPLPHFDTINLPEK ALPLPHFDTINLPEKKVKNVTQIEPFCLET K A L E K K 1 0 1 1 0 0 1 0 1 1 3 1 0 1 3 0 1 0 0 0 0 0 15 0 1703.9247 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 568 582 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 0.0001303 53.169 2 2 1.0106 0.9812 11.31 4 Median 0.7872 0.88347 2.4599 2 0 Median 1.2846 1.073 0.26633 2 0 Median 271540000 141070000 130470000 170170000 96191000 73977000 101370000 44880000 56493000 787 1837 808 2101;2102;2103;2104 3285;3286;3287;3288;3289;3290;3291;3292;3293 3290 9 ALPQTPRPR PSRGRSECDSSPEPKALPQTPRPRSRSPSS SSPEPKALPQTPRPRSRSPSSPELNNKCLT K A L P R S 1 2 0 0 0 1 0 0 0 0 1 0 0 0 3 0 1 0 0 0 0 0 9 1 1034.5985 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1488 1496 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 3 0.0009149 78.334 2 1.0618 1.1132 4.4346 2 Median 1.0618 1.1132 4.4346 2 0 Median NaN NaN NaN 0 0 Median 12533000 4397500 8135400 12533000 4397500 8135400 0 0 0 788 619 809 2105;2106 3294;3295 3295 2 ALPTQQGLQGR TAAAVAADKYHRGSKALPTQQGLQGRPAFP RGSKALPTQQGLQGRPAFPGYGVQDSSPYP K A L G R P 1 1 0 0 0 3 0 2 0 0 2 0 0 0 1 0 1 0 0 0 0 0 11 0 1167.636 Q7Z5J4;A8MXE8 Q7Z5J4 84 94 RAI1 Retinoic acid-induced protein 1 yes no 2 0.017321 45.368 1 1.9354 1.6759 NaN 1 Median NaN NaN NaN 0 0 Median 1.9354 1.6759 NaN 1 0 Median 2576800 1128000 1448800 0 0 0 2576800 1128000 1448800 789 1879 810 2107 3296 3296 1 ALPVAVAVAEAQR EEKRLRRLERRRRSKALPVAVAVAEAQRRP SKALPVAVAVAEAQRRPYYADYSPTRRSIH K A L Q R R 5 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 3 0 0 13 0 1293.7405 A2SX38;H3BNT0 A2SX38 330 342 CACNA1H yes no 2 0.0030996 66.435 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8026400 0 8026400 8026400 0 8026400 0 0 0 790 654 811 2108 3297 3297 1 ALQAAIQQLAEAQPEATAK FCLTLHRYRDAASRRALQAAIQQLAEAQPE AIQQLAEAQPEATAKNLLHSLQSSGIGSKA R A L A K N 7 0 0 0 0 4 2 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 19 0 1951.0375 E1NZA1;Q92616;B4DM32 E1NZA1 69 87 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 7.0121E-64 176.91 2 2 1.6466 1.4932 35.226 4 Median 1.9542 1.9935 2.3167 2 0 Median 1.3613 1.0871 6.3426 2 0 Median 46893000 19186000 27707000 37634000 15015000 22619000 9259000 4170700 5088200 791 1205 812 2109;2110;2111;2112 3298;3299;3300;3301;3302;3303;3304;3305;3306 3304 9 ALQAEIAALR ______________________________ LAEVRALQAEIAALRRACEDPPAPWEEKSR R A L L R R 4 1 0 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1054.6135 Q6IPU0;A0A087WTF1 Q6IPU0 10 19 CENPP Centromere protein P yes no 2 0.030216 51.949 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 797810 0 797810 0 0 0 797810 0 797810 792 1845 813 2113 3307 3307 1 ALQALEELR SRVKAEAEAAREKQRALQALEELRLQAEEA AREKQRALQALEELRLQAEEAERRLRQAEV R A L L R L 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1041.5819 Q15149 Q15149 1671 1679 PLEC Plectin yes yes 2 8.1393E-05 101.64 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9348400 0 9348400 9348400 0 9348400 0 0 0 793 1754 814 2114 3308;3309 3308 2 ALQALQNEPIPER ______________________________ MKALQALQNEPIPERSPQNGESGKDVDDDK K A L E R S 2 1 1 0 0 2 2 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 13 0 1477.7889 E5RJN7;E7EVI1;B7Z1P6;A0A0A0MTC4;A0A0A0MTD1;Q2TBD5;F8VPI7;A8K276;Q4LE57;E7EPX0;A0A0A0MTC6;E7EVJ4;E9PH62;A0A0A0MTC5;A0A024R7X7;Q9NUL3;E5RFK1 E5RJN7 3 15 STAU2;STAU2 variant protein Double-stranded RNA-binding protein Staufen homolog 2 yes no 2 0.00013575 90.685 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4430900 4430900 0 4430900 4430900 0 0 0 0 794 237 815 2115 3310 3310 1 ALQDSAPDRPSPVER ASLNSQVWSALQMSKALQDSAPDRPSPVER ALQDSAPDRPSPVERIVSRDIARGYERIPI K A L E R I 2 2 0 2 0 1 1 0 0 0 1 0 0 0 3 2 0 0 0 1 0 0 15 1 1636.8169 A0A1B0GV09;Q9H9B1;A0A0C4DGF8;A0A1B0GU48;A0A1B0GWF6 A0A1B0GV09 963 977 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 3 0.0020043 39.509 2 1.2043 1.0854 0.36109 2 Median NaN NaN NaN 0 0 Median 1.2043 1.0854 0.36109 2 0 Median 3982000 1924600 2057300 0 0 0 3982000 1924600 2057300 795 631 816 2116;2117 3311;3312;3313 3311 3 ALQEEIDR KGNMDEAHIDQVRRKALQEEIDRESGKTEA IDQVRRKALQEEIDRESGKTEASETRKWTG K A L D R E 1 1 0 1 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 972.48762 Q1ED39;H3BPL4;H3BNU8 Q1ED39 334 341 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 0.0055803 83.265 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 796 1775 817 2118;2119 3314;3315 3314 2 ALQEEIDRESGK KGNMDEAHIDQVRRKALQEEIDRESGKTEA RRKALQEEIDRESGKTEASETRKWTGTQFG K A L G K T 1 1 0 1 0 1 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 12 1 1373.6787 Q1ED39;H3BPL4;H3BNU8 Q1ED39 334 345 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 1.9873E-07 113.93 2 1 0.80095 0.8928 NaN 1 Median 0.80095 0.8928 NaN 1 0 Median NaN NaN NaN 0 0 Median 17928000 10557000 7370200 16186000 10557000 5628800 1741400 0 1741400 797 1775 818 2120;2121;2122 3316;3317;3318 3316 3 ALQEFDLALR WFQTKEERKKEKIAKALQEFDLALRGKKKR EKIAKALQEFDLALRGKKKRKKFMKDAKKK K A L L R G 2 1 0 1 0 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 10 0 1174.6346 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 636 645 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 4.0245E-06 109.71 2 2 0.91051 0.91222 0.88777 4 Median 0.78863 0.90394 0.65766 2 0 Median 1.0685 0.91658 0.043159 2 0 Median 348860000 184910000 163950000 288330000 156420000 131910000 60529000 28488000 32041000 798 899;1099 819 2123;2124;2125;2126 3319;3320;3321;3322;3323;3324;3325 3320 7 ALQFPPEGWLR IFICHANVIRYIVCRALQFPPEGWLRLSLN IVCRALQFPPEGWLRLSLNNGSITHLVIRP R A L L R L 1 1 0 0 0 1 1 1 0 0 2 0 0 1 2 0 0 1 0 0 0 0 11 0 1312.6928 Q96HS1;F5GXG4 Q96HS1 241 251 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.0056298 64.654 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11291000 0 11291000 11291000 0 11291000 0 0 0 799 1972 820 2127;2128 3326;3327 3327 2 ALQIVYGIR YPNPKPEVLHMIYMRALQIVYGIRLEHFYM HMIYMRALQIVYGIRLEHFYMMPVNSEVMY R A L I R L 1 1 0 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1031.6128 A0A024R8Y0;Q9BZD4;E9PQC4;B1AQT4;E9PP32;E9PKH1;B1AQT3 A0A024R8Y0 52 60 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 0.0038201 77.674 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2841100 2841100 0 0 0 0 2841100 2841100 0 800 264 821 2129 3328 3328 1 ALQLEVDRLEELK AVATIMSGSKAKVRKALQLEVDRLEELKMQ RKALQLEVDRLEELKMQNMKKVIEAIRVEL K A L L K M 1 1 0 1 0 1 3 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 13 1 1554.8617 A0A024RC67;O43663 A0A024RC67 274 286 PRC1 Protein regulator of cytokinesis 1 yes no 2;3 5.3959E-05 87.667 3 3 0.83695 0.84976 18.864 6 Median 0.62616 0.74895 7.815 3 0 Plateau 1.1669 0.99218 2.7136 3 0 Median 191910000 100620000 91281000 116560000 65226000 51330000 75350000 35398000 39951000 801 353 822 2130;2131;2132;2133;2134;2135 3329;3330;3331;3332;3333;3334;3335;3336;3337 3334 9 ALQLILDVLNPETSEDENDR ARSVFGHICSHLTPRALQLILDVLNPETSE LDVLNPETSEDENDRVVVTDDSDERRLKGA R A L D R V 1 1 2 3 0 1 3 0 0 1 4 0 0 0 1 1 1 0 0 1 0 0 20 0 2283.123 Q9BQG0;I3L1L3 Q9BQG0 685 704 MYBBP1A Myb-binding protein 1A yes no 2 1.0848E-06 77.527 2 0.85497 0.86868 12.528 2 Median 0.85497 0.86868 12.528 2 0 Median NaN NaN NaN 0 0 Median 19298000 10255000 9042900 19298000 10255000 9042900 0 0 0 802 1997 823 2136;2137 3338;3339 3339 2 ALQLILDVLNPETSEDENDRVVVTDDSDER ARSVFGHICSHLTPRALQLILDVLNPETSE DENDRVVVTDDSDERRLKGAEDKSEEGEDN R A L E R R 1 2 2 6 0 1 4 0 0 1 4 0 0 0 1 2 2 0 0 4 0 0 30 1 3398.6325 Q9BQG0;I3L1L3 Q9BQG0 685 714 MYBBP1A Myb-binding protein 1A yes no 3 3.6269E-07 43.936 1 0.81183 0.85577 NaN 1 Median 0.81183 0.85577 NaN 1 0 Median NaN NaN NaN 0 0 Median 14278000 8095000 6183000 14278000 8095000 6183000 0 0 0 803 1997 824 2138 3340 3340 1 ALQLLQMYYEGR IAVHPDYQGMGYGSRALQLLQMYYEGRFPC GSRALQLLQMYYEGRFPCLEEKVLETPQEI R A L G R F 1 1 0 0 0 2 1 1 0 0 3 0 1 0 0 0 0 0 2 0 0 0 12 0 1483.7493 Q9H0A0;A0A087WV29 Q9H0A0 644 655 NAT10 N-acetyltransferase 10 yes no 2 3.9356E-18 141.93 6 6 1.2004 1.3423 30.761 10 Plateau 1.2081 1.3106 8.2817 4 0 Median 0.92714 0.76674 12.454 6 0 Median 357060000 170710000 186340000 264970000 125530000 139440000 92084000 45184000 46900000 804 2023 825;826 2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150 3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353;3354;3355;3356;3357;3358;3359;3360 3348 1857 20 ALQQEQEIEQR LKVEHTSRLKAAFVKALQQEQEIEQRLLQQ AFVKALQQEQEIEQRLLQQGTAPAQAKAEP K A L Q R L 1 1 0 0 0 4 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1370.679 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR30;A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 465 475 GATAD2B;GATAD2A Transcriptional repressor p66-beta;Transcriptional repressor p66-alpha no no 2 1.2653E-112 260.28 2 3 0.78156 0.91223 30.827 3 Median 0.7643 0.88082 4.9561 2 0 Median 1.8132 1.4972 NaN 1 0 Median 322870000 173000000 149870000 311180000 170630000 140550000 11697000 2373100 9323600 805 229;591 827 2151;2152;2153;2154;2155 3361;3362;3363;3364;3365;3366;3367;3368 3363 8 ALQQGLVGLELK GLVDLARGQLLPVSKALQQGLVGLELKEKL VSKALQQGLVGLELKEKLLAAERATTGYPD K A L L K E 1 0 0 0 0 2 1 2 0 0 4 1 0 0 0 0 0 0 0 1 0 0 12 0 1267.75 A0A075B730;A0A087X1U6;P58107 A0A075B730 73 84 EPPK1 Epiplakin no no 2 8.1278E-06 103.88 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20686000 0 20686000 17152000 0 17152000 3533300 0 3533300 806 397;1622 828 2156;2157;2158 3369;3370;3371 3371 3 ALQQYTLEPSEK YILNGLTVSIPGLERALQQYTLEPSEKPFD LERALQQYTLEPSEKPFDLKSVPLATAPMA R A L E K P 1 0 0 0 0 2 2 0 0 0 2 1 0 0 1 1 1 0 1 0 0 0 12 0 1405.7089 Q9Y678;B3KW21;Q8WUI6 Q9Y678 561 572 COPG1;COPG Coatomer subunit gamma-1 yes no 2 1.0535E-12 130.98 2 2.1106 2.1637 3.6558 2 Median 2.1106 2.1637 3.6558 2 0 Median NaN NaN NaN 0 0 Median 22107000 8589400 13518000 22107000 8589400 13518000 0 0 0 807 2151 829 2159;2160 3372;3373;3374 3372 3 ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK GARGKGRTQLSLLPRALQRPSAAAPQAENG AAPAVAAPAATEAPKMSNADFAKLFLRK__ R A L P K M 14 1 1 0 0 2 2 1 0 0 1 1 0 0 6 1 1 0 0 1 0 0 32 1 2964.5417 Q15020;B4DYA2 Q15020 919 950 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 3 5.77E-18 68.96 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20852000 0 20852000 20852000 0 20852000 0 0 0 808 1748 830 2161;2162 3375;3376;3377;3378 3378 4 ALQSGQCAGAALDVFTEEPPR NCARGGIVDEGALLRALQSGQCAGAALDVF CAGAALDVFTEEPPRDRALVDHENVISCPH R A L P R D 4 1 0 1 1 2 2 2 0 0 2 0 0 1 2 1 1 0 0 1 0 0 21 0 2216.0532 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8 O43175 248 268 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.00047035 46.746 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4445900 0 4445900 4445900 0 4445900 0 0 0 809 1382 831 2163 3379 3379 1 ALQSGQCAGAALDVFTEEPPRDR NCARGGIVDEGALLRALQSGQCAGAALDVF GAALDVFTEEPPRDRALVDHENVISCPHLG R A L D R A 4 2 0 2 1 2 2 2 0 0 2 0 0 1 2 1 1 0 0 1 0 0 23 1 2487.1812 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8 O43175 248 270 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 3 1.1686E-09 78.378 2 2 3.0004 3.2626 38.076 3 Plateau 2.9453 3.2782 0.67373 2 0 Median 1.8583 1.6953 NaN 1 0 Median 99766000 22330000 77436000 86205000 19372000 66833000 13561000 2957800 10603000 810 1382 832 2164;2165;2166;2167 3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390 3382 11 ALQSVGQIVGEVLK KELTKQYEKSENDLKALQSVGQIVGEVLKQ KALQSVGQIVGEVLKQLTEEKFIVKATNGP K A L L K Q 1 0 0 0 0 2 1 2 0 1 2 1 0 0 0 1 0 0 0 3 0 0 14 0 1439.8348 V9HW24;A0A087X2I1;P62333;H0YJC0;H0YJE9;H0YJT1 V9HW24 49 62 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 3.3166E-09 113.22 2 1 2.3035 2.5233 13.236 2 Median 2.3035 2.5233 13.236 2 0 Median NaN NaN NaN 0 0 Median 108390000 35744000 72649000 105750000 33098000 72649000 2646300 2646300 0 811 454 833 2168;2169;2170 3391;3392;3393;3394;3395 3393 5 ALQSYYEAK LEEAKMRRAELQRARALQSYYEAKARREKK ELQRARALQSYYEAKARREKKIKSKKYHKV R A L A K A 2 0 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 2 0 0 0 9 0 1071.5237 Q9BVJ6;B4E343;X6RJY0;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 232 240 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C no no 2 0.00079176 94.302 2 2 1.242 1.1541 8.866 4 Median 0.99689 1.0758 8.0753 2 0 Median 1.4978 1.2129 5.172 2 0 Median 88856000 46137000 42720000 72985000 39966000 33020000 15871000 6170800 9700300 812 2008;393 834 2171;2172;2173;2174 3396;3397;3398;3399;3400;3401;3402 3398 7 ALQTQNSEIVK AIPHLRRRRGRLPRRALQTQNSEIVKDDEG LPRRALQTQNSEIVKDDEGKEDYQFDELNT R A L V K D 1 0 1 0 0 2 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1229.6616 Q9Y483;Q96G26;B4DZG1 Q9Y483 507 517 MTF2 Metal-response element-binding transcription factor 2 yes no 2 2.7741E-12 138.4 1 1.1834 1.1921 NaN 1 Median 1.1834 1.1921 NaN 1 0 Median NaN NaN NaN 0 0 Median 27876000 12231000 15645000 27876000 12231000 15645000 0 0 0 813 2143 835 2175 3403 3403 1 ALQYFHPK TGKIVVGHAIHNDFKALQYFHPKSLTRDTS AIHNDFKALQYFHPKSLTRDTSHIPPLNRK K A L P K S 1 0 0 0 0 1 0 0 1 0 1 1 0 1 1 0 0 0 1 0 0 0 8 0 1002.5287 Q9H9L3 Q9H9L3 270 277 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 2 0.063473 38.836 1 1.7054 1.3447 NaN 1 Median NaN NaN NaN 0 0 Median 1.7054 1.3447 NaN 1 0 Median 2296300 699920 1596400 0 0 0 2296300 699920 1596400 814 2046 836 2176 3404 3404 1 ALRPPTSPGVFGALQNFK KFSFSFSNKKLLGSKALRPPTSPGVFGALQ PPTSPGVFGALQNFKEDKPKPVRDEYEYVS K A L F K E 2 1 1 0 0 1 0 2 0 0 2 1 0 2 3 1 1 0 0 1 0 0 18 1 1899.0367 O75151;Q8N359;B4DH04 O75151 649 666 PHF2 Lysine-specific demethylase PHF2 yes no 3 4.3861E-06 80.361 1 1 1.277 1.2354 15.94 2 Median 0.98784 1.1037 NaN 1 0 Median 1.6509 1.3828 NaN 1 0 Median 17247000 8790300 8456300 11668000 6214400 5453300 5578900 2575900 3003000 815 1400 837 2177;2178 3405;3406;3407 3406 3 ALSAIADLLTNEHER WTYGRYIRSALRQEKALSAIADLLTNEHER ALSAIADLLTNEHERVVKAASGALRNLAVD K A L E R V 3 1 1 1 0 0 2 0 1 1 3 0 0 0 0 1 1 0 0 0 0 0 15 0 1651.8529 Q7KZJ3;A0A024R4Z0;Q96FS1;Q68DU0;C9JZR2;O60716;A0A024R4Y7 Q7KZJ3 382 396 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 3 0.028833 13.791 1 1 0.86477 0.80535 32.592 2 Median 1.0143 1.0141 NaN 1 0 Median 0.7373 0.63958 NaN 1 0 Median 18929000 9182800 9746400 16479000 8009900 8468900 2450400 1172900 1277500 816 165 838 2179;2180 3408;3409 3408 2 ALSAVSAQAAAAQK QPVPVVKPAVLPGTKALSAVSAQAAAAQKN KALSAVSAQAAAAQKNKLKEPGGGSFRDDD K A L Q K N 7 0 0 0 0 2 0 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 14 0 1285.699 A0A0G2JRY5;O00268;V9GY14 A0A0G2JRY5 176 189 TAF4 Transcription initiation factor TFIID subunit 4 yes no 2 0.00027926 82.029 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5079000 5079000 0 5079000 5079000 0 0 0 0 817 535 839 2181;2182 3410;3411 3411 2 ALSGTSPDDVQPGPSVGPPSK ESAIVSRPLNPFTAKALSGTSPDDVQPGPS PDDVQPGPSVGPPSKDKDKVLPSFWIPSLT K A L S K D 1 0 0 2 0 1 0 3 0 0 1 1 0 0 5 4 1 0 0 2 0 0 21 0 1991.98 A0A075B797;M0R3B2;A8K670;Q9Y314 A0A075B797 113 133 NOSIP Nitric oxide synthase-interacting protein yes no 2 0.0093039 37.594 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5000900 0 5000900 5000900 0 5000900 0 0 0 818 398 840 2183 3412 3412 1 ALSHILQTPIEIIQADSPPIIVGEEYSK DIVNTAAWGGQLELRALSHILQTPIEIIQA QADSPPIIVGEEYSKKPLILVYMRHAYGLG R A L S K K 2 0 0 1 0 2 3 1 1 6 2 1 0 0 3 3 1 0 1 1 0 0 28 0 3060.6383 A0A087X0W9;Q8N6M0 A0A087X0W9 263 290 OTUD6B OTU domain-containing protein 6B yes no 3 2.729E-16 69.952 2 3.222 3.3255 13.844 2 Median 3.222 3.3255 13.844 2 0 Median NaN NaN NaN 0 0 Median 29115000 6427300 22687000 29115000 6427300 22687000 0 0 0 819 446 841 2184;2185 3413;3414;3415 3415 3 ALSIVESEQDK FMKGLYKESSKAYERALSIVESEQDKAHIL AYERALSIVESEQDKAHILTALAITEYKQG R A L D K A 1 0 0 1 0 1 2 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1217.6139 Q6PGP7 Q6PGP7 1077 1087 TTC37 Tetratricopeptide repeat protein 37 yes yes 2 0.0028994 67.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 820 1855 842 2186 3416 3416 1 ALSLAR ERDRAEAEAREKETKALSLARALEEAMEQK AEAREKETKALSLARALEEAMEQKAELERL K A L A R A 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 6 0 629.38606 A0A024R1N1;P35579;A0A0U4BW16;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;Q7Z7R0;O14729;O14794;Q68D89;Q66K75;Q2PS10;P35580 A0A024R1N1 1478 1483 MYH9;MYH11;DKFZp686D10126;MYH10 Myosin-9;Myosin-11;Myosin-10 no no 2 0.031538 128 1 1.688 1.9124 NaN 1 Median 1.688 1.9124 NaN 1 0 Median NaN NaN NaN 0 0 Median 106300000 36836000 69465000 106300000 36836000 69465000 0 0 0 821 81;1544 843 2187 3417 3417 1 ALSLLSLPPK LVLSKPALEEEEAPRALSLLSLPPKKRSIL EEAPRALSLLSLPPKKRSILGLGQARPLEF R A L P K K 1 0 0 0 0 0 0 0 0 0 4 1 0 0 2 2 0 0 0 0 0 0 10 0 1037.6485 Q4VC44;I3L188 Q4VC44 249 258 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 0.004316 61.679 2 1 0.95363 0.87766 13.512 2 Median 0.79597 0.79768 NaN 1 0 Median 1.1425 0.96565 NaN 1 0 Median 8821200 3774300 5047000 6818000 2758700 4059400 2003200 1015600 987580 822 1781 844 2188;2189;2190 3418;3419;3420 3419 3 ALSLLTLLNVYQK KFQKKLKELGRLNAKALSLLTLLNVYQKKH AKALSLLTLLNVYQKKHLVEILSYHNCDSQ K A L Q K K 1 0 1 0 0 1 0 0 0 0 5 1 0 0 0 1 1 0 1 1 0 0 13 0 1474.8759 A0A024R363;A0A087X0F1;Q9UK61 A0A024R363 948 960 C3orf63;FAM208A Protein FAM208A no no 2 1.0579E-08 127.4 2 1.0445 1.0763 NaN 1 Median 1.0445 1.0763 NaN 1 0 Median NaN NaN NaN 0 0 Median 16315000 12359000 3955900 16315000 12359000 3955900 0 0 0 823 129;2105 845 2191;2192 3421;3422;3423 3422 3 ALSNLESIPGGYNALR RNPAMMQEMMRNQDRALSNLESIPGGYNAL LSNLESIPGGYNALRRMYTDIQEPMFSAAR R A L L R R 2 1 2 0 0 0 1 2 0 1 3 0 0 0 1 2 0 0 1 0 0 0 16 0 1673.8737 D3DVA8;A0A024R258;B4DZF6;B3KNI8;B3KNI2;Q59F94;Q9UMX0;Q9NRR5;H0YDS0;Q59FJ2 D3DVA8 90 105 UBQLN4;UBQLN1 Ubiquilin-1;Ubiquilin-4 yes no 2 0.0078919 34.685 2 1.2948 1.2969 16.251 2 Median 1.2948 1.2969 16.251 2 0 Median NaN NaN NaN 0 0 Median 18034000 7531900 10502000 18034000 7531900 10502000 0 0 0 824 105 846 2193;2194 3424;3425;3426;3427 3424 4 ALSPLEEWLR SSAQDPQAVLGALGRALSPLEEWLRLHTYL GALGRALSPLEEWLRLHTYLAGEAPTLADL R A L L R L 1 1 0 0 0 0 2 0 0 0 3 0 0 0 1 1 0 1 0 0 0 0 10 0 1212.6503 A0A024RCN6;P26640;A0A140T936;A0A140T954;A2ABF4;A0A0G2JJT9;A0A140T904 A0A024RCN6 138 147 VARS Valine--tRNA ligase yes no 2 0.00076493 81.594 1 2 0.72484 0.75784 32.431 3 Plateau 0.72484 0.75784 NaN 1 0 Median 0.49796 0.43695 9.059 2 0 Median 15921000 9376800 6544100 13090000 7697000 5392600 2831200 1679700 1151500 825 363 847 2195;2196;2197 3428;3429;3430;3431 3429 4 ALSSDSILSPAPDAR TPDWVSEGPQPGLRRALSSDSILSPAPDAR ALSSDSILSPAPDARAADPAPEVRKVNRIP R A L A R A 3 1 0 2 0 0 0 0 0 1 2 0 0 0 2 4 0 0 0 0 0 0 15 0 1498.7627 Q8IVT2 Q8IVT2 392 406 MISP Mitotic interactor and substrate of PLK1 yes yes 2 0.0028907 61.815 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4140300 4140300 0 4140300 4140300 0 0 0 0 826 1892 848 2198 3432 3432 1 ALSSLELSSHLAK ILTSPCSPEIRVYTKALSSLELSSHLAKDL TKALSSLELSSHLAKDLLVLLNEILEQVKD K A L A K D 2 0 0 0 0 0 1 0 1 0 4 1 0 0 0 4 0 0 0 0 0 0 13 0 1354.7456 Q9BPX3;Q6NUR1 Q9BPX3 853 865 NCAPG Condensin complex subunit 3 yes no 2;3 4.2161E-39 185.77 4 4 1.1667 1.1144 14.858 8 Median 0.8645 0.97622 3.4123 4 0 Median 1.5667 1.2854 2.3387 4 0 Median 568750000 282620000 286130000 444780000 233180000 211600000 123970000 49437000 74529000 827 1995 849 2199;2200;2201;2202;2203;2204;2205;2206 3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3444;3445;3446 3438 14 ALSSSADDASLVNASISSSVK ATFCSQRDGDASLNKALSSSADDASLVNAS DDASLVNASISSSVKATSPVKSTTSITDAK K A L V K A 4 0 1 2 0 0 0 0 0 1 2 1 0 0 0 8 0 0 0 2 0 0 21 0 2007.996 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6 B4DSL6 149 169 ANLN Actin-binding protein anillin yes no 2 6.2442E-18 95.57 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7056300 0 7056300 7056300 0 7056300 0 0 0 828 294 850 2207 3447 3447 1 ALSSSVIR EAEREKKRLERAKRRALSSSVIRELKEQYS LERAKRRALSSSVIRELKEQYSDAPEEIRD R A L I R E 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 3 0 0 0 1 0 0 8 0 831.48142 Q8NEJ9;H0YJ17 Q8NEJ9 200 207 NGDN Neuroguidin yes no 2 0.0050709 91.626 2 0.92529 0.99567 5.5181 2 Median 0.92529 0.99567 5.5181 2 0 Median NaN NaN NaN 0 0 Median 78214000 40835000 37379000 78214000 40835000 37379000 0 0 0 829 1927 851 2208;2209 3448;3449;3450;3451 3451 4 ALSVYGLPIR FIHDSLPPVLTDRERALSVYGLPIRWEAGE TDRERALSVYGLPIRWEAGEPVNVGAQLTT R A L I R W 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 0 0 1 1 0 0 10 0 1087.639 A0A0A8K8C0;Q9H6W3 A0A0A8K8C0 520 529 URLC2;NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 yes no 2 0.00054054 85.212 1 0.59488 0.61994 NaN 1 Median 0.59488 0.61994 NaN 1 0 Median NaN NaN NaN 0 0 Median 5140500 3104700 2035800 5140500 3104700 2035800 0 0 0 830 497 852 2210 3452 3452 1 ALTALFK GVMVPAPIQDLEALRALTALFKEQRNRETA IQDLEALRALTALFKEQRNRETAPRTIFQR R A L F K E 2 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 7 0 762.46398 Q9UBB4;Q7Z524 Q9UBB4 28 34 ATXN10 Ataxin-10 yes no 2 0.047335 59.641 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1185400 1185400 0 1185400 1185400 0 0 0 0 831 2095 853 2211 3453 3453 1 ALTALGLAVPR DSLRELLRLPLRYPRALTALGLAVPRGVLL RYPRALTALGLAVPRGVLLAGPPGVGKTQL R A L P R G 3 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 1 0 0 1 0 0 11 0 1080.6655 Q9BVQ7 Q9BVQ7 225 235 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 2.0681E-08 122.13 3 1 0.71496 0.72211 0.58608 2 Median 0.71496 0.72211 0.58608 2 0 Median NaN NaN NaN 0 0 Median 19098000 11799000 7299000 18365000 11066000 7299000 732600 732600 0 832 2009 854 2212;2213;2214;2215 3454;3455;3456;3457;3458 3456 5 ALTEPEAR LCRRRSLLELHKRRKALTEPEARYYLRQIV ELHKRRKALTEPEARYYLRQIVLGCQYLHR K A L A R Y 2 1 0 0 0 0 2 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 8 0 885.4556 P53350;B2R841;B4E083;Q59GD0;Q58A51 P53350 147 154 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 0.01993 58.815 1 1.0249 1.0726 NaN 1 Median 1.0249 1.0726 NaN 1 0 Median NaN NaN NaN 0 0 Median 12804000 6865500 5938900 12804000 6865500 5938900 0 0 0 833 1604 855 2216 3459 3459 1 ALTHLEMR PVVFVATKDTRALRKALTHLEMRRAARRPN DTRALRKALTHLEMRRAARRPNLPLKVKPT K A L M R R 1 1 0 0 0 0 1 0 1 0 2 0 1 0 0 0 1 0 0 0 0 0 8 0 969.50659 A0A024R534;O94776 A0A024R534 619 626 MTA2 Metastasis-associated protein MTA2 yes no 2 0.0050026 72.492 2 1.0489 1.0937 NaN 1 Median 1.0489 1.0937 NaN 1 0 Median NaN NaN NaN 0 0 Median 38476000 19925000 18551000 38476000 19925000 18551000 0 0 0 834 168 856 2217;2218 3460;3461 3460 140 2 ALTLGALTLPLAR PQSQELDVQVKDDSRALTLGALTLPLARLL SRALTLGALTLPLARLLTAPELILDQWFQL R A L A R L 3 1 0 0 0 0 0 1 0 0 5 0 0 0 1 0 2 0 0 0 0 0 13 0 1308.8129 B3KY56;B3KMV5;A0A024RB17;A0A024RB16;Q9BSJ8 B3KY56 505 517 FAM62A;ESYT1 Extended synaptotagmin-1 yes no 2 5.1087E-09 120.09 2 1.6382 1.6601 8.7047 2 Median 1.6382 1.6601 8.7047 2 0 Median NaN NaN NaN 0 0 Median 26576000 10517000 16059000 26576000 10517000 16059000 0 0 0 835 320 857 2219;2220 3462;3463;3464 3462 3 ALTQFPLPK RGSSFEMTDDDSAIRALTQFPLPKNLLAKV DDSAIRALTQFPLPKNLLAKVIQIATSSST R A L P K N 1 0 0 0 0 1 0 0 0 0 2 1 0 1 2 0 1 0 0 0 0 0 9 0 1013.591 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 210 218 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0049428 67.981 1 1.4165 1.1394 NaN 1 Median NaN NaN NaN 0 0 Median 1.4165 1.1394 NaN 1 0 Median 2499700 995380 1504300 0 0 0 2499700 995380 1504300 836 122 858 2221 3465;3466 3465 2 ALTQTGGPHVK GVFREATTEFSVDARALTQTGGPHVKARVA VDARALTQTGGPHVKARVANPSGNLTETYV R A L V K A 1 0 0 0 0 1 0 2 1 0 1 1 0 0 1 0 2 0 0 1 0 0 11 0 1107.6037 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1284 1294 FLNA;FLJ00119 Filamin-A yes no 2 0.00035655 99.257 1 1.4933 1.6192 NaN 1 Median 1.4933 1.6192 NaN 1 0 Median NaN NaN NaN 0 0 Median 22184000 9228500 12955000 22184000 9228500 12955000 0 0 0 837 1504 859 2222 3467;3468 3467 2 ALTSEIALLQSR STLNSGKKSLETEHKALTSEIALLQSRLKT EHKALTSEIALLQSRLKTEGSDLCDRVSEM K A L S R L 2 1 0 0 0 1 1 0 0 1 3 0 0 0 0 2 1 0 0 0 0 0 12 0 1300.7351 Q96HX3;Q6IBR0;Q53EP4;P04843;B4DL99;B7Z4L4;B4DNJ5 Q96HX3 486 497 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.00013806 93.561 1 2 1.826 1.9588 NaN 1 Median 1.826 1.9588 NaN 1 0 Median NaN NaN NaN 0 0 Median 29498000 13579000 15919000 25338000 9418900 15919000 4160500 4160500 0 838 1444 860 2223;2224;2225 3469;3470;3471;3472;3473 3470 5 ALTVAHELLCNKPEEEK LETLSHDTLVTTKTRALTVAHELLCNKPEE TVAHELLCNKPEEEKALLVQVVNKLGDPQN R A L E K A 2 0 1 0 1 0 4 0 1 0 3 2 0 0 1 0 1 0 0 1 0 0 17 1 1979.9986 B2R5U7;Q03701 B2R5U7 365 381 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 3.2282E-05 70.235 1 1.1623 0.99979 NaN 1 Median NaN NaN NaN 0 0 Median 1.1623 0.99979 NaN 1 0 Median 6517200 2831700 3685500 0 0 0 6517200 2831700 3685500 839 836;1683 861 2226 3474;3475 3475 2 ALTVPELTQQMFDAK PGFAPLTSRGSQQYRALTVPELTQQMFDAK ALTVPELTQQMFDAKNMMAACDPRHGRYLT R A L A K N 2 0 0 1 0 2 1 0 0 0 2 1 1 1 1 0 2 0 0 1 0 0 15 0 1690.86 Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;P04350;B4DE77;B4DJ43;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3 Q8IZ29 283 297 TUBB2C;TUBB4B;TUBB4A;TUBB3 Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2 1.7743E-07 105.2 3 2 2.1197 3.0153 40.966 4 Linear 2.6234 2.9491 39.43 3 0 Plateau 1.7128 1.4125 NaN 1 0 Median 169900000 47825000 122070000 153820000 43355000 110470000 16076000 4470300 11605000 840 1660;1441;502 862;863 2227;2228;2229;2230;2231 3476;3477;3478;3479;3480;3481;3482 3477 346 7 ALTVPELTQQMFDSK PGFAPLTSRGSQQYRALTVPELTQQMFDSK ALTVPELTQQMFDSKNMMAACDPRHGRYLT R A L S K N 1 0 0 1 0 2 1 0 0 0 2 1 1 1 1 1 2 0 0 1 0 0 15 0 1706.8549 Q13885;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2 Q13885 283 297 TUBB2A;TUBB2B;DKFZp566F223 Tubulin beta-2A chain;Tubulin beta-2B chain yes no 2 0.014359 39.625 1 2 1.3985 1.3077 114.5 2 Median 2.6298 2.9383 NaN 1 0 Median 0.74371 0.58195 NaN 1 0 Median 68707000 19228000 49479000 63072000 17051000 46021000 5635300 2176700 3458600 841 1723 864 2232;2233;2234 3483;3484;3485 3484 3 ALTVPELTQQVFDAK PGFAPLTSRGSQQYRALTVPELTQQVFDAK ALTVPELTQQVFDAKNMMAACDPRHGRYLT R A L A K N 2 0 0 1 0 2 1 0 0 0 2 1 0 1 1 0 2 0 0 2 0 0 15 0 1658.8879 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8 Q5JP53 265 279 TUBB;XTP3TPATP1 Tubulin beta chain yes no 2 5.1279E-22 144.1 2 2 1.3613 1.3734 31.41 4 Median 1.5169 1.8055 1.8118 2 0 Median 1.2011 1.0484 1.3073 2 0 Median 2658700000 1083300000 1575300000 2178600000 861860000 1316700000 480050000 221460000 258600000 842 1452 865 2235;2236;2237;2238 3486;3487;3488;3489;3490;3491;3492;3493 3487 8 ALVADSHPESER EDYAETVHQLSKTSRALVADSHPESERISM TSRALVADSHPESERISMRQSKVDKLYAGL R A L E R I 2 1 0 1 0 0 2 0 1 0 1 0 0 0 1 2 0 0 0 1 0 0 12 0 1309.6262 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1571 1582 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 2.6269E-05 100.48 3 3 2.0611 2.0669 53.738 5 Median 1.9936 1.9616 3.2243 3 0 Median 6.0947 5.3071 2.0737 2 0 Median 56454000 17442000 39011000 49810000 16846000 32964000 6643600 596640 6047000 843 415 866 2239;2240;2241;2242;2243;2244 3494;3495;3496;3497;3498;3499;3500;3501 3495 8 ALVATPGK KAVTTPGKKGATPGKALVATPGKKGAAIPA KGATPGKALVATPGKKGAAIPAKGAKNGKN K A L G K K 2 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 0 755.45414 B3KTP9;A0A024R4A0;P19338;Q9BQ02;C9JYW2;C9JLB1;C9J1H7;C9JWL1 B3KTP9 40 47 NCL Nucleolin yes no 2 0.0015211 108.24 2 1.031 1.1703 8.7133 2 Median 1.031 1.1703 8.7133 2 0 Median NaN NaN NaN 0 0 Median 301920000 154900000 147030000 301920000 154900000 147030000 0 0 0 844 151 867 2245;2246 3502;3503;3504;3505 3503 4 ALVATPGKK KAVTTPGKKGATPGKALVATPGKKGAAIPA GATPGKALVATPGKKGAAIPAKGAKNGKNA K A L K K G 2 0 0 0 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 9 1 883.5491 B3KTP9;A0A024R4A0;P19338;Q9BQ02;C9JYW2;C9JLB1;C9J1H7;C9JWL1 B3KTP9 40 48 NCL Nucleolin yes no 2 0.00082117 98.523 1 1 0.70025 0.70611 76.417 2 Median 1.0267 1.2121 NaN 1 0 Median 0.47762 0.41134 NaN 1 0 Median 51810000 27415000 24395000 48492000 25222000 23269000 3318100 2192400 1125700 845 151 868 2247;2248 3506;3507 3506 2 ALVAVLLSR HPHRLTGNKVQQYHRALVAVLLSRTWHVRR VQQYHRALVAVLLSRTWHVRRQAQQTVRKL R A L S R T 2 1 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 2 0 0 9 0 940.60695 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 568 576 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.017976 52.482 1 1.6053 1.6078 NaN 1 Median 1.6053 1.6078 NaN 1 0 Median NaN NaN NaN 0 0 Median 17167000 5711300 11455000 17167000 5711300 11455000 0 0 0 846 1205 869 2249 3508 3508 1 ALVAYYQK GHVAQIYAIRQSISKALVAYYQKYVDEASK IRQSISKALVAYYQKYVDEASKKEIKDILI K A L Q K Y 2 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 954.51747 P62249;M0R210;M0R3H0;A0A087WZ27;M0R1M5;M0QX76 P62249 91 98 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 0.001718 124.32 2 2 0.94097 0.93017 27.887 4 Median 1.0076 1.1907 5.362 2 0 Median 0.89712 0.73758 3.2469 2 0 Median 1262900000 629700000 633250000 1196500000 595250000 601250000 66439000 34448000 31991000 847 1636 870 2250;2251;2252;2253 3509;3510;3511;3512;3513;3514;3515 3510 7 ALVDGPCTQVR AGKLVAIVDVIDQNRALVDGPCTQVRRQAM DQNRALVDGPCTQVRRQAMPFKCMQLTDFI R A L V R R 1 1 0 1 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1214.6078 E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914;A8K3Q9 A8K3Q9 36 46 RPL14 60S ribosomal protein L14 no no 2 7.3983E-08 133.23 3 2 0.80468 0.75586 12.413 5 Median 0.7866 0.92956 12.876 3 0 Median 0.86373 0.75083 0.94376 2 0 Median 2775000000 1545000000 1230000000 2525300000 1412400000 1113000000 249690000 132620000 117070000 848 645;725 871 2254;2255;2256;2257;2258 3516;3517;3518;3519;3520;3521;3522;3523;3524;3525 3517 9 ALVDHENVISCPHLGASTK GAALDVFTEEPPRDRALVDHENVISCPHLG HENVISCPHLGASTKEAQSRCGEEIAVQFV R A L T K E 2 0 1 1 1 0 1 1 2 1 2 1 0 0 1 2 1 0 0 2 0 0 19 0 2047.0157 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8 O43175 271 289 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 3;4 0.00014795 48.315 2 1 2.5622 2.3998 50.717 2 Median 3.1789 3.435 NaN 1 0 Median 2.0652 1.6766 NaN 1 0 Median 62555000 10930000 51625000 59692000 10156000 49536000 2862400 773360 2089100 849 1382 872 2259;2260;2261 3526;3527;3528 3527 3 ALVDILSEVSK ALAQYQNHLQEQPRKALVDILSEVSKATLQ QPRKALVDILSEVSKATLQEILPEVLKADL K A L S K A 1 0 0 1 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 11 0 1172.6653 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 180 190 MYBBP1A Myb-binding protein 1A yes no 2 0.00041914 79.974 2 2 0.99425 0.92931 12.279 4 Median 0.92289 1.0397 2.2379 2 0 Median 1.0497 0.84152 0.40414 2 0 Median 216910000 110730000 106190000 174830000 90628000 84199000 42085000 20099000 21986000 850 1997 873 2262;2263;2264;2265 3529;3530;3531;3532;3533;3534;3535;3536;3537 3529 9 ALVDPGPDFVVCDEGHILK GRNVKSRKLKEIFNKALVDPGPDFVVCDEG PGPDFVVCDEGHILKNEASAVSKAMNSIRS K A L L K N 1 0 0 3 1 0 1 2 1 1 2 1 0 1 2 0 0 0 0 3 0 0 19 0 2080.0299 A4LAA3;P46100;B4DHH8;H0Y3T0 A4LAA3 1707 1725 ATRX Transcriptional regulator ATRX yes no 3 0.00016304 39.385 1 2 1.1917 0.97204 14.913 3 Median 0.74221 0.76068 NaN 1 0 Median 1.2156 0.98401 1.7318 2 0 Median 46202000 23754000 22448000 31896000 17360000 14536000 14305000 6393700 7911700 851 672 874 2266;2267;2268 3538;3539;3540;3541 3541 4 ALVEFESNPEETREPGSPPSVQR PESPESLTSVSRTRRALVEFESNPEETREP PEETREPGSPPSVQRAGLGSPERPPKTSPG R A L Q R A 1 2 1 0 0 1 5 1 0 0 1 0 0 1 4 3 1 0 0 2 0 0 23 1 2554.23 Q9H6F5;H0YG79 Q9H6F5 31 53 CCDC86 Coiled-coil domain-containing protein 86 yes no 3 4.8474E-13 98.703 2 2 0.38728 0.4448 65.411 3 Plateau 0.37692 0.42111 7.7384 2 0 Median 0.16295 0.13617 NaN 1 0 Median 123220000 94722000 28502000 96849000 70952000 25897000 26374000 23770000 2604500 852 2037 875 2269;2270;2271;2272 3542;3543;3544;3545;3546;3547;3548 3544 7 ALVELLR AYLRRIKMELQQKDRALVELLREKVGLFAE MELQQKDRALVELLREKVGLFAEMTHFQAE R A L L R E 1 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 812.51199 D3DVA5;V9GYM8;Q92974 D3DVA5 647 653 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 2 0.026711 76.847 1 1.1195 1.1482 NaN 1 Median 1.1195 1.1482 NaN 1 0 Median NaN NaN NaN 0 0 Median 6516600 2759700 3756900 6516600 2759700 3756900 0 0 0 853 1197 876 2273 3549 3549 1 ALVFQPVAELK ANTPDSGCVLGMRKRALVFQPVAELKDQTD MRKRALVFQPVAELKDQTDFEHRIPKEQWW R A L L K D 2 0 0 0 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 2 0 0 11 0 1213.7071 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9;Q7Z683 A0A024R0Y5 717 727 PFKM;DKFZp779O048 ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.0058056 55.549 1 1.8714 1.4518 NaN 1 Median NaN NaN NaN 0 0 Median 1.8714 1.4518 NaN 1 0 Median 3519800 1120400 2399400 0 0 0 3519800 1120400 2399400 854 61 877 2274 3550 3550 1 ALVLDCHYPEDEVGQEDEAESDIFSIR PNFVVEVIKNDDGKRALVLDCHYPEDEVGQ VGQEDEAESDIFSIREVSFQSTGESEWKDT R A L I R E 2 1 0 4 1 1 5 1 1 2 2 0 0 1 1 2 0 0 1 2 0 0 27 0 3135.3979 A8K651;Q07021;I3L3Q7;I3L3B0 A8K651 181 207 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 3 4.3173E-16 69.152 2 1.6691 1.6942 13.26 2 Median 1.6691 1.6942 13.26 2 0 Median NaN NaN NaN 0 0 Median 27378000 11445000 15933000 27378000 11445000 15933000 0 0 0 855 756 878 2275;2276 3551;3552 3552 2 ALVLNGK DRSIFTGLMIDPRTKALVLNGKPGHLQFYS LMIDPRTKALVLNGKPGHLQFYSLQSDKQL K A L G K P 1 0 1 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 713.44357 A8K330;Q8IWA0 A8K330 348 354 WDR75 WD repeat-containing protein 75 yes no 2 0.026742 77.72 1 1.0803 1.0684 NaN 1 Median 1.0803 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median 19320000 10100000 9220000 19320000 10100000 9220000 0 0 0 856 716 879 2277 3553 3553 1 ALVMLLEVR LAGDEEPEVRKNVCRALVMLLEVRMDRLLP RKNVCRALVMLLEVRMDRLLPHMHNIVEYM R A L V R M 1 1 0 0 0 0 1 0 0 0 3 0 1 0 0 0 0 0 0 2 0 0 9 0 1042.6209 A0A024RAM0;Q92973;B4DRY5;A0A024R7F7;Q4LE60;B3KPC8;A0A075B780;Q05D48;O14787 A0A024RAM0 246 254 TNPO1;TNPO2;TNPO2 variant protein Transportin-1;Transportin-2 yes no 2 0.0026577 67.993 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14004000 0 14004000 14004000 0 14004000 0 0 0 857 309 880 2278;2279 3554;3555 3555 225 2 ALVNCQYSSATFSTGER PHEIRGSRARALPDRALVNCQYSSATFSTG VNCQYSSATFSTGERKRRPHGDRKSCEMGL R A L E R K 2 1 1 0 1 1 1 1 0 0 1 0 0 1 0 3 2 0 1 1 0 0 17 0 1889.8578 Q9NPD3;E9PI41 Q9NPD3 70 86 EXOSC4 Exosome complex component RRP41 yes no 2 5.0766E-10 111.79 3 2 0.90444 0.85625 7.2827 4 Median 0.7862 0.80333 6.7075 2 0 Median 1.0539 0.88976 3.1156 2 0 Median 41990000 21485000 20505000 29776000 15444000 14332000 12214000 6041500 6172800 858 2056 881 2280;2281;2282;2283;2284 3556;3557;3558;3559;3560;3561;3562 3556 7 ALVQNDTLLQVK FDQQNGRTYLKYSIKALVQNDTLLQVKGTG SIKALVQNDTLLQVKGTGANGSFKLNRKKL K A L V K G 1 0 1 1 0 2 0 0 0 0 3 1 0 0 0 0 1 0 0 2 0 0 12 0 1340.7664 Q92522 Q92522 95 106 H1FX Histone H1x yes yes 2 6.2824E-18 143.89 2 2 0.77036 0.78185 38.831 4 Median 0.92357 1.0913 1.4058 2 0 Median 0.64439 0.55727 2.1334 2 0 Median 1460000000 799310000 660660000 1163300000 613250000 550060000 296660000 186060000 110600000 859 1946 882 2285;2286;2287;2288 3563;3564;3565;3566;3567;3568;3569;3570;3571;3572 3564 10 ALVTGYFMQVAHLER STDFTSRDYYINIRKALVTGYFMQVAHLER ALVTGYFMQVAHLERTGHYLTVKDNQVVQL K A L E R T 2 1 0 0 0 1 1 1 1 0 2 0 1 1 0 0 1 0 1 2 0 0 15 0 1733.8923 O43143;B4E0S6 O43143 692 706 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 3 3.7131E-05 79.652 2 2 1.5723 1.4709 41.142 4 Median 2.0634 2.1016 3.3911 2 0 Median 1.1994 1.0321 3.042 2 0 Median 41805000 17453000 24352000 36942000 15431000 21510000 4863600 2022000 2841700 860 1379 883;884 2289;2290;2291;2292 3573;3574;3575;3576;3577;3578;3579 3575 1042 7 ALVVEMSR RAIEALHGHELRPGRALVVEMSRPRPLNTW HELRPGRALVVEMSRPRPLNTWKIFVGNVS R A L S R P 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 8 0 903.48479 A0A0S2Z4Z0;Q96PK6;A0A0S2Z567;A0A0A6YYI9;A0A0S2Z5V2;F8WDX3;A0A0A0MSL8;B8ZZ74 A0A0S2Z4Z0 65 72 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 2 0.015661 50.703 2 1.5133 1.537 3.1001 2 Median 1.5133 1.537 3.1001 2 0 Median NaN NaN NaN 0 0 Median 38326000 15779000 22547000 38326000 15779000 22547000 0 0 0 861 571 885 2293;2294 3580;3581;3582 3581 422 3 ALWEDEGVR VPDFDFPPEFYEHAKALWEDEGVRACYERS FYEHAKALWEDEGVRACYERSNEYQLIDCA K A L V R A 1 1 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 9 0 1073.5142 Q5FWY2;A0A0S2Z3S5;A0A0S2Z3H8;P63092;Q5JWF2;B0AZR9;Q14455;S4R3E3;Q5JWE9;H0Y7F4;S4R3V9 Q5FWY2 138 146 GNAS;GSA Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 2 0.0074668 61.962 2 1.5128 1.5309 2.7218 2 Median 1.5128 1.5309 2.7218 2 0 Median NaN NaN NaN 0 0 Median 18056000 6656100 11400000 18056000 6656100 11400000 0 0 0 862 549 886 2295;2296 3583;3584 3583 2 ALWFQGR TREDAMAMVDHCLKKALWFQGRCVKVDLSE MVDHCLKKALWFQGRCVKVDLSEKYKKLVL K A L G R C 1 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 7 0 876.46062 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;H0Y8T4;Q5CZA7;B4DF66;B3KM87;B4DRS1;Q9H4N1 D6REM6 556 562 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 2 0.026859 80.999 1 0.94526 1.0775 NaN 1 Median 0.94526 1.0775 NaN 1 0 Median NaN NaN NaN 0 0 Median 100520000 51359000 49160000 100520000 51359000 49160000 0 0 0 863 542 887 2297 3585;3586 3586 2 ALYDTFSAFGNILSCK GNIFIKNLDKSIDNKALYDTFSAFGNILSC LYDTFSAFGNILSCKVVCDENGSKGYGFVH K A L C K V 2 0 1 1 1 0 0 1 0 1 2 1 0 2 0 2 1 0 1 0 0 0 16 0 1805.8658 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;B3KT93;A0A024R9E2;E5RGH3;E5RJB9;B1ANR0;Q6IQ30;Q13310;H0Y5F5;B1ANR1;H0YEQ8 A0A087WTT1 89 104 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 3.149E-06 83.182 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11943000 11943000 0 11943000 11943000 0 0 0 0 864 273;818 888 2298 3587 3587 1 ALYLIATNGTPELQNPEK MVEGEPPYLNENPLRALYLIATNGTPELQN LIATNGTPELQNPEKLSPIFRDFLNRCLEM R A L E K L 2 0 2 0 0 1 2 1 0 1 3 1 0 0 2 0 2 0 1 0 0 0 18 0 1971.0313 A8K5M4;Q9Y6B5;Q13177;H0YCG5;B7Z302;E9PM17;B7Z3K0;B3KNX7;A0A024R5P0;A8KAN3;Q13153 A8K5M4 451 468 PAK2;PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 1 yes no 2 0.00062353 56.951 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7347300 0 7347300 6405900 0 6405900 941410 0 941410 865 750 889 2299;2300;2301;2302 3588;3589;3590;3591 3589 4 ALYYLQIHPQELR VASCNSSQVVVAVGRALYYLQIHPQELRQI GRALYYLQIHPQELRQISHTEMEHEVACLD R A L L R Q 1 1 0 0 0 2 1 0 1 1 3 0 0 0 1 0 0 0 2 0 0 0 13 0 1642.8831 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 515 527 DDB1 DNA damage-binding protein 1 yes no 2;3 6.2579E-06 104.79 5 4 0.88325 0.86847 22.878 8 Median 0.65839 0.74814 19.158 4 0 Median 1.1801 0.99331 5.1518 4 0 Median 564880000 302430000 262450000 435960000 243010000 192960000 128910000 59421000 69490000 866 1770 890 2303;2304;2305;2306;2307;2308;2309;2310;2311 3592;3593;3594;3595;3596;3597;3598;3599;3600;3601;3602;3603;3604;3605;3606;3607;3608;3609;3610;3611 3601 19 AMDLAQAGSTVESK FTTYFLPLANTLKSKAMDLAQAGSTVESKI KAMDLAQAGSTVESKIYDTLQWQMWTLLPG K A M S K I 3 0 0 1 0 1 1 1 0 0 1 1 1 0 0 2 1 0 0 1 0 0 14 0 1406.6711 B3KMR5;Q5JTH9;B3KY97 B3KMR5 600 613 RRP12 RRP12-like protein yes no 2 2.305E-17 130.16 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 867 907 891 2312 3612 3612 727 1 AMDPQDLQNTEVPIATTAK ELLARLPPTLCTWLKAMDPQDLQNTEVPIA QDLQNTEVPIATTAKLVNKVIELLPEKHGQ K A M A K L 3 0 1 2 0 2 1 0 0 1 1 1 1 0 2 0 3 0 0 1 0 0 19 0 2041.999 B3KNG8;Q9H2M9 B3KNG8 587 605 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes no 2 0.0091218 41.621 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 868 913 892 2313 3613 3613 751 1 AMEVDERPTEQYSDIGGLDK LILETLPTEYDSRVKAMEVDERPTEQYSDI ERPTEQYSDIGGLDKQIQELVEAIVLPMNH K A M D K Q 1 1 0 3 0 1 3 2 0 1 1 1 1 0 1 1 1 0 1 1 0 0 20 1 2252.0267 E9PM69;R4GNH3;A0A140VK42;P17980;A8K781;E9PMD8;E9PN50 E9PM69 132 151 PSMC3 26S protease regulatory subunit 6A yes no 3 6.5454E-07 66.325 2 2.8834 3.2335 NaN 1 Median 2.8834 3.2335 NaN 1 0 Median NaN NaN NaN 0 0 Median 41309000 4764900 36544000 41309000 4764900 36544000 0 0 0 869 617 893 2314;2315 3614;3615;3616 3614 466 3 AMEVDIEERPK VDPNRAVPLRKRKVKAMEVDIEERPKELVR RKVKAMEVDIEERPKELVRKPYVLNDLEAE K A M P K E 1 1 0 1 0 0 3 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 11 1 1315.6442 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9P0T8;B4E098 Q9Y3C1 75 85 NOP16 Nucleolar protein 16 yes no 2;3 6.9853E-05 89.403 3 1 1.1087 1.2492 28.222 4 Median 1.1308 1.3316 8.0451 3 0 Median 0.86163 0.74214 NaN 1 0 Median 151810000 74637000 77173000 149900000 73467000 76432000 1911600 1170300 741270 870 2135 894;895 2316;2317;2318;2319 3617;3618;3619;3620 3619 1967 3 AMFLQPDLDSLVDFSTNNQK FLSPPALQGYVAWLRAMFLQPDLDSLVDFS PDLDSLVDFSTNNQKKAQDSSLHMPERAVF R A M Q K K 1 0 2 3 0 2 0 0 0 0 3 1 1 2 1 2 1 0 0 1 0 0 20 0 2282.0889 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 412 431 MYBBP1A Myb-binding protein 1A yes no 2 8.8985E-10 97.69 2 1.1067 1.1749 0.67687 2 Median 1.1067 1.1749 0.67687 2 0 Median NaN NaN NaN 0 0 Median 67953000 28600000 39352000 67953000 28600000 39352000 0 0 0 871 1997 896 2320;2321 3621;3622;3623 3623 1831 3 AMGIMNSFVNDIFER KVLKQVHPDTGISSKAMGIMNSFVNDIFER AMGIMNSFVNDIFERIAGEASRLAHYNKRS K A M E R I 1 1 2 1 0 0 1 1 0 2 0 0 2 2 0 1 0 0 0 1 0 0 15 0 1742.812 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;A0A024RCL8;B4DR52;P57053;O60814;Q0D2M2;Q16778;P33778;P23527;A0A024RCJ2;P06899;Q8N257 B2R4S9 59 73 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2 1.6932E-224 308.91 24 32 0.69442 0.82224 42.222 26 Median 0.73737 0.82836 40.607 15 0 Median 0.63684 0.55862 41.467 11 0 Median 30206000000 18870000000 11336000000 13682000000 6811700000 6870100000 16524000000 12058000000 4466000000 872 34;1513 897;898;899 2322;2323;2324;2325;2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342;2343;2344;2345;2346;2347;2348;2349;2350;2351;2352;2353;2354;2355;2356;2357;2358;2359;2360;2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371;2372;2373;2374;2375;2376;2377 3624;3625;3626;3627;3628;3629;3630;3631;3632;3633;3634;3635;3636;3637;3638;3639;3640;3641;3642;3643;3644;3645;3646;3647;3648;3649;3650;3651;3652;3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663;3664;3665;3666;3667;3668;3669;3670;3671;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688;3689;3690;3691;3692;3693;3694;3695;3696;3697;3698;3699;3700;3701;3702;3703;3704;3705;3706;3707;3708;3709;3710;3711;3712;3713;3714;3715;3716 3688 18;19 90 AMGQGLPDEEQEK SPCWASPQLLRIIFKAMGQGLPDEEQEKLL FKAMGQGLPDEEQEKLLRICSIYTQSGENS K A M E K L 1 0 0 1 0 2 3 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 13 0 1430.6348 Q9Y4W2 Q9Y4W2 487 499 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 8.5335E-10 123.51 2 2.4992 2.535 22.041 2 Median 2.4992 2.535 22.041 2 0 Median NaN NaN NaN 0 0 Median 19317000 5976300 13340000 19317000 5976300 13340000 0 0 0 873 2146 900 2378;2379 3717;3718 3718 1984 2 AMGVVVATGVNTEIGK KKNMLFSGTNIAAGKAMGVVVATGVNTEIG MGVVVATGVNTEIGKIRDEMVATEQERTPL K A M G K I 2 0 1 0 0 0 1 3 0 1 0 1 1 0 0 0 2 0 0 4 0 0 16 0 1544.8232 A0A0S2Z3L2;P16615;H7C5W9 A0A0S2Z3L2 219 234 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 3.1996E-09 99.522 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5364400 0 5364400 5364400 0 5364400 0 0 0 874 554 901 2380 3719 3719 408 1 AMLAQQYQEGTLSVEK LWELLFSEAISSEQRAMLAQQYQEGTLSVE MLAQQYQEGTLSVEKLAAKLSATLEQAAAT R A M E K L 2 0 0 0 0 3 2 1 0 0 2 1 1 0 0 1 1 0 1 1 0 0 16 0 1794.8822 A0A075B730;A0A087X1U6;P58107 A0A075B730 500 515 EPPK1 Epiplakin no no 2 7.729E-07 85.288 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5025500 0 5025500 5025500 0 5025500 0 0 0 875 397;1622 902 2381;2382 3720;3721 3721 286 2 AMLSGPGQFAENETNEVNFR FIVKREHALTSGTIKAMLSGPGQFAENETN PGQFAENETNEVNFREIPSHVLSKVCMYFT K A M F R E 2 1 3 0 0 1 3 2 0 0 1 0 1 2 1 1 1 0 0 1 0 0 20 0 2210.0062 E5RHG8;A0A024R7Y5;Q15369 E5RHG8 44 63 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2 5.8701E-14 94.551 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9809000 0 9809000 9809000 0 9809000 0 0 0 876 238 903 2383;2384 3722;3723 3723 177 2 AMNQQTTLDTPQLER KHVAYVFQALIYWIKAMNQQTTLDTPQLER AMNQQTTLDTPQLERKRTRELLELGIDNED K A M E R K 1 1 1 1 0 3 1 0 0 0 2 0 1 0 1 0 3 0 0 0 0 0 15 0 1744.8414 E7EMW7;O95071 E7EMW7 1954 1968 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.001371 55.452 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4253300 0 4253300 4253300 0 4253300 0 0 0 877 1218 904 2385;2386 3724;3725 3725 928 2 AMNVLTEAEER LQEMKEKLGRNVNMRAMNVLTEAEERYNDL VNMRAMNVLTEAEERYNDLMKKKRIVENDK R A M E R Y 2 1 1 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 11 0 1261.5973 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 987 997 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.4183E-13 128.27 6 8 1.2149 1.1323 18.427 11 Median 1.0271 1.1713 9.178 4 0 Median 1.2543 1.0237 22.823 7 0 Median 559100000 264020000 295080000 481660000 233190000 248470000 77436000 30832000 46603000 878 69 905;906 2387;2388;2389;2390;2391;2392;2393;2394;2395;2396;2397;2398;2399;2400 3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741;3742;3743;3744;3745;3746;3747;3748;3749 3729 39 24 AMPEEEPVRGPAK AERLAKRNRRAKRARAMPEEEPVRGPAKKQ ARAMPEEEPVRGPAKKQKQGKKSVFDEELT R A M A K K 2 1 0 0 0 0 3 1 0 0 0 1 1 0 3 0 0 0 0 1 0 0 13 1 1409.6973 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 695 707 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2;3 4.61E-20 150.1 4 1 0.98757 1.1807 26.923 5 Median 1.0224 1.2142 5.0171 4 0 Median 0.79711 0.6637 NaN 1 0 Median 249040000 119850000 129190000 245460000 117800000 127660000 3581800 2046800 1535100 879 899;1099 907 2401;2402;2403;2404;2405 3750;3751;3752;3753;3754;3755;3756;3757 3752 720 8 AMQADISQAAQILSSDPSR ASALQIATHTAFVAKAMQADISQAAQILSS DISQAAQILSSDPSRTHQALGILSKTYDAA K A M S R T 4 1 0 2 0 3 0 0 0 2 1 0 1 0 1 4 0 0 0 0 0 0 19 0 1987.9633 P42166 P42166 592 610 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 5.5935E-05 65.472 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 880 1562 908 2406;2407 3758;3759 3759 1315 2 AMSSGGSGGGVPEQEDSVLFR ______________________________ SGGGVPEQEDSVLFRRGTGQSDDSDIWDDT M A M F R R 1 1 0 1 0 1 2 5 0 0 1 0 1 1 1 4 0 0 0 2 0 0 21 0 2065.9375 B4DP61;E7EQZ4;Q16637;Q9UNT8 B4DP61 2 22 SMN2;SMN1;SMN Survival motor neuron protein yes no 2 0.00050013 41.092 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2616900 0 2616900 2616900 0 2616900 0 0 0 881 1019 909 2408 3760 3760 807 1 AMSTLVPQGGPVLCR HAMDTLQRNGYDLAKAMSTLVPQGGPVLCR AMSTLVPQGGPVLCRDEMEEWSASEAMLFE K A M C R D 1 1 0 0 1 1 0 2 0 0 2 0 1 0 2 1 1 0 0 2 0 0 15 0 1584.8116 A0A024R534;O94776 A0A024R534 248 262 MTA2 Metastasis-associated protein MTA2 yes no 2 9.482E-06 87.298 2 1.0723 1.0821 8.9151 2 Median 1.0723 1.0821 8.9151 2 0 Median NaN NaN NaN 0 0 Median 28795000 13342000 15453000 28795000 13342000 15453000 0 0 0 882 168 910 2409;2410 3761;3762;3763;3764 3764 141 4 AMTMLTIEQLSYLLK CEKITVAECIETQSKAMTMLTIEQLSYLLK AMTMLTIEQLSYLLKFAIQKMKQPGTDAFQ K A M L K F 1 0 0 0 0 1 1 0 0 1 4 1 2 0 0 1 2 0 1 0 0 0 15 0 1753.9358 A0A087WVZ6;A6H8Y8;A0A087WV57;Q2HXV5;Q5TH12;H7C4X9;A0A087WYS3;Q9ULU4 A0A087WVZ6 140 154 ZMYND8 Protein kinase C-binding protein 1 no no 2 0.00054118 57.164 2 0.98635 0.9924 15.603 2 Median 0.98635 0.9924 15.603 2 0 Median NaN NaN NaN 0 0 Median 15301000 7995200 7306200 15301000 7995200 7306200 0 0 0 883 422;1317 911 2411;2412 3765;3766;3767 3767 307;308 3 AMVEYEIDLQK QDLIKMIFDVESMKKAMVEYEIDLQKMPLG SMKKAMVEYEIDLQKMPLGKLSKRQIQAAY K A M Q K M 1 0 0 1 0 1 2 0 0 1 1 1 1 0 0 0 0 0 1 1 0 0 11 0 1337.6537 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 685 695 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 8.8011E-05 93.598 2 2 0.84724 0.94574 42.408 4 Linear 0.80967 0.91033 9.3058 2 0 Median 0.56452 0.4572 23.786 2 0 Median 216080000 123700000 92381000 196440000 111550000 84890000 19645000 12154000 7490300 884 139 912 2413;2414;2415;2416 3768;3769;3770;3771;3772;3773;3774;3775 3771 117 8 AMYPGTFYFQFK ______________________________ PMKAMYPGTFYFQFKNLWEANDRNETWLCF K A M F K N 1 0 0 0 0 1 0 1 0 0 0 1 1 3 1 0 1 0 2 0 0 0 12 0 1498.6955 M4VP52;Q59GY0;Q9NRW3 M4VP52 11 22 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes no 2 9.4326E-05 77.677 1 0.82371 0.82511 NaN 1 Median 0.82371 0.82511 NaN 1 0 Median NaN NaN NaN 0 0 Median 15736000 7242700 8493500 15736000 7242700 8493500 0 0 0 885 1357 913 2417 3776 3776 1025 1 ANANQPLLTPK ALVDFIYQYWKLKRKANANQPLLTPKTDEV LKRKANANQPLLTPKTDEVDNLAQQEQDVL K A N P K T 2 0 2 0 0 1 0 0 0 0 2 1 0 0 2 0 1 0 0 0 0 0 11 0 1165.6455 B5MBX1;A8K356;A8K9C0;A0A0C4DFT8;B4DFY8;G3XAA4;B3KPL2;Q9NQC1 B5MBX1 437 447 JADE2;PHF15 Protein Jade-2 yes no 2 0.0068776 63.076 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7908400 7908400 0 7908400 7908400 0 0 0 0 886 507 914 2418 3777 3777 1 ANATVDGLEQGYVVCPSEK SLKKEPLYVGVDDDKANATVDGLEQGYVVC VDGLEQGYVVCPSEKRFLLLFTFLKKNRKK K A N E K R 2 0 1 1 1 1 2 2 0 0 1 1 0 0 1 1 1 0 1 3 0 0 19 0 2035.9521 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7 Q4ZG72 269 287 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 5.3726E-157 244.56 3 1 1.2378 1.213 13.458 2 Median 0.97304 1.1029 NaN 1 0 Median 1.5746 1.3341 NaN 1 0 Median 201480000 123590000 77888000 139110000 99831000 39282000 62364000 23758000 38606000 887 303 915 2419;2420;2421;2422 3778;3779;3780;3781;3782;3783 3782 6 ANCIDSTASAEAVFASEVK HTFLRNGGHFVISIKANCIDSTASAEAVFA DSTASAEAVFASEVKKMQQENMKPQEQLTL K A N V K K 5 0 1 1 1 0 2 0 0 1 0 1 0 1 0 3 1 0 0 2 0 0 19 0 1968.9099 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4 Q96BS4 205 223 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 1.071E-22 132.44 3 2 0.82023 0.82325 3.2446 4 Median 0.73688 0.84607 0.84037 2 0 Median 0.92492 0.80089 0.86785 2 0 Median 690820000 372490000 318330000 370650000 207220000 163430000 320170000 165270000 154900000 888 1506 916 2423;2424;2425;2426;2427 3784;3785;3786;3787;3788;3789;3790;3791;3792;3793;3794;3795;3796 3790 13 ANCIDSTASAEAVFASEVKK HTFLRNGGHFVISIKANCIDSTASAEAVFA STASAEAVFASEVKKMQQENMKPQEQLTLE K A N K K M 5 0 1 1 1 0 2 0 0 1 0 2 0 1 0 3 1 0 0 2 0 0 20 1 2097.0048 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4 Q96BS4 205 224 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3 1.554E-06 54.225 2 0.86381 0.73451 2.7582 2 Median NaN NaN NaN 0 0 Median 0.86381 0.73451 2.7582 2 0 Median 54990000 28004000 26986000 0 0 0 54990000 28004000 26986000 889 1506 917 2428;2429 3797;3798;3799;3800;3801 3799 5 ANDYANAVLQALSNVPPLR GTTYLPGIVGLNNIKANDYANAVLQALSNV ANAVLQALSNVPPLRNYFLEEDNYKNIKRP K A N L R N 4 1 3 1 0 1 0 0 0 0 3 0 0 0 2 1 0 0 1 2 0 0 19 0 2025.0643 B9A018;Q53GS9;B7Z7L9;A0A087X1B2 B9A018 232 250 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.011102 24.964 1 0.89321 0.97618 NaN 1 Median 0.89321 0.97618 NaN 1 0 Median NaN NaN NaN 0 0 Median 36515000 15544000 20971000 36515000 15544000 20971000 0 0 0 890 1119 918 2430 3802 3802 1 ANEAMAIDTLLISDELFR HEPDRAFYGLKQVEKANEAMAIDTLLISDE AMAIDTLLISDELFRHQDVATRSRYVRLVD K A N F R H 3 1 1 2 0 0 2 0 0 2 3 0 1 1 0 1 1 0 0 0 0 0 18 0 2021.0139 B3KPC1;A0A024QZR3;Q9BRX2 B3KPC1 302 319 hCG_2002731;PELO Protein pelota homolog yes no 2 0.0024112 42.209 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1785500 1785500 0 1785500 1785500 0 0 0 0 891 26 919 2431 3803 3803 15 1 ANEEGLALLQEEIDK TNVSSLLNMERARDKANEEGLALLQEEIDK ANEEGLALLQEEIDKMVETTELMTGNIQSL K A N D K M 2 0 1 1 0 1 4 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 15 0 1670.8363 A0A024RD28;Q7L2Z9 A0A024RD28 150 164 C6orf139;CENPQ Centromere protein Q yes no 2 0.00014503 79.744 1 2 1.2009 0.97068 7.3985 2 Median NaN NaN NaN 0 0 Median 1.2009 0.97068 7.3985 2 0 Median 15101000 6721100 8380000 0 0 0 15101000 6721100 8380000 892 376 920 2432;2433;2434 3804;3805;3806 3805 3 ANEHQGIGFLNDPR FQGREKDFIILSCVRANEHQGIGFLNDPRR RANEHQGIGFLNDPRRLNVALTRARYGVII R A N P R R 1 1 2 1 0 1 1 2 1 1 1 0 0 1 1 0 0 0 0 0 0 0 14 0 1566.7539 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 844 857 UPF1 Regulator of nonsense transcripts 1 yes no 3 4.851E-05 61.641 1 1.8954 1.915 NaN 1 Median 1.8954 1.915 NaN 1 0 Median NaN NaN NaN 0 0 Median 19810000 7849800 11961000 19810000 7849800 11961000 0 0 0 893 231 921 2435 3807 3807 1 ANELLQR ICPLLYSTDDAICSKANELLQRSRQVQNKT TDDAICSKANELLQRSRQVQNKTEKERMLR K A N Q R S 1 1 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 842.46102 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 839 845 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.022881 91.626 2 1.038 1.1003 6.2972 2 Median 1.038 1.1003 6.2972 2 0 Median NaN NaN NaN 0 0 Median 67299000 31131000 36168000 67299000 31131000 36168000 0 0 0 894 39 922 2436;2437 3808;3809 3809 2 ANELPQPPVPEPANAGK PAEDDDYSPPSKRPKANELPQPPVPEPANA ELPQPPVPEPANAGKRKVREFNFEKWNARI K A N G K R 3 0 2 0 0 1 2 1 0 0 1 1 0 0 5 0 0 0 0 1 0 0 17 0 1727.8842 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347 X5D2J9 286 302 GTF2I General transcription factor II-I yes no 2 0.010131 53.252 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16129000 16129000 0 16129000 16129000 0 0 0 0 895 789 923 2438;2439 3810;3811 3811 2 ANENSNIQVLSER IGQTITISRVEGRRRANENSNIQVLSERSA RRANENSNIQVLSERSATEVDNNFSKPPPF R A N E R S 1 1 3 0 0 1 2 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 13 0 1472.7219 B4DTW7;Q6UN15 B4DTW7 100 112 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 2 2.0686E-06 100.55 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 896 1035 924 2440;2441;2442;2443 3812;3813;3814;3815 3814 4 ANEQEPCGWWLAR NKEITEGDEVEVYSRANEQEPCGWWLARVR SRANEQEPCGWWLARVRMMKGDFYVIEYAA R A N A R V 2 1 1 0 1 1 2 1 0 0 1 0 0 0 1 0 0 2 0 0 0 0 13 0 1615.7202 P51116;I3L1Z2 P51116 81 93 FXR2 Fragile X mental retardation syndrome-related protein 2 yes no 2 0.00031691 72.434 2 1.1323 1.1899 NaN 1 Median 1.1323 1.1899 NaN 1 0 Median NaN NaN NaN 0 0 Median 16998000 5145700 11852000 16998000 5145700 11852000 0 0 0 897 1593 925 2444;2445 3816;3817;3818 3817 3 ANGPNYIQPQK NGSLGEVTPCQHAKKANGPNYIQPQKRQTT HAKKANGPNYIQPQKRQTTFESQDRKAVSP K A N Q K R 1 0 2 0 0 2 0 1 0 1 0 1 0 0 2 0 0 0 1 0 0 0 11 0 1228.62 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50 A0A024R250 642 652 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.013324 55.112 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2881500 0 2881500 2881500 0 2881500 0 0 0 898 104 926 2446 3819 3819 1 ANGTTVHVGIHPSK RKKYVIYIERVQREKANGTTVHVGIHPSKV KANGTTVHVGIHPSKVVITRLKLDKDRKKI K A N S K V 1 0 1 0 0 0 0 2 2 1 0 1 0 0 1 1 2 0 0 2 0 0 14 0 1416.7474 Q6IBH6;P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KS10;E5RIT6;Q9UNX3 Q6IBH6 90 103 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 no no 2;3 2.5732E-21 167.73 4 4 0.67362 0.63747 37.48 8 Median 0.83264 0.90235 3.5628 4 0 Median 0.55354 0.44473 3.527 4 0 Median 400680000 226030000 174660000 349820000 192630000 157180000 50869000 33395000 17474000 899 1629;1214 927 2447;2448;2449;2450;2451;2452;2453;2454 3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832;3833;3834;3835 3822 16 ANGVTDLLVVHEHR NRGRHEVGALVRACKANGVTDLLVVHEHRG KANGVTDLLVVHEHRGTPVGLIVSHLPFGP K A N H R G 1 1 1 1 0 0 1 1 2 0 2 0 0 0 0 0 1 0 0 3 0 0 14 0 1558.8216 H0Y714;Q96G21;B8ZZ47;E7ENR5;B9A008 H0Y714 119 132 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 3 0.055481 16.427 1 1.6605 1.4424 NaN 1 Median NaN NaN NaN 0 0 Median 1.6605 1.4424 NaN 1 0 Median 2262500 990040 1272400 0 0 0 2262500 990040 1272400 900 1286 928 2455 3836 3836 1 ANILGLAAGQR RVEGITGKQMESFLKANILGLAAGQRCGAS SFLKANILGLAAGQRCGAS___________ K A N Q R C 3 1 1 0 0 1 0 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1082.6196 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 651 661 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.0015533 66.621 2 2 1.0937 1.0492 16.236 4 Median 0.82119 0.9088 4.8689 2 0 Median 1.444 1.1966 3.16 2 0 Median 117580000 61117000 56460000 97870000 53047000 44824000 19707000 8070900 11636000 901 1745 929 2456;2457;2458;2459 3837;3838;3839;3840;3841;3842;3843;3844 3839 8 ANINVENAFFTLAR LALDYGIKFMETSAKANINVENAFFTLARD KANINVENAFFTLARDIKAKMDKKLEGNSP K A N A R D 3 1 3 0 0 0 1 0 0 1 1 0 0 2 0 0 1 0 0 1 0 0 14 0 1578.8154 A0A024R7I3;P61006 A0A024R7I3 154 167 RAB8A Ras-related protein Rab-8A yes no 2 0.0010858 56.205 2 1.6994 1.4922 10.088 2 Median NaN NaN NaN 0 0 Median 1.6994 1.4922 10.088 2 0 Median 4315900 1458200 2857700 0 0 0 4315900 1458200 2857700 902 226 930 2460;2461 3845;3846;3847;3848 3847 4 ANITLSGK LITRHHLKKRASSARANITLSGKKRRKLLQ KRASSARANITLSGKKRRKLLQQIRLAQKE R A N G K K 1 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 802.45487 E9PLD3;A0A0B4J220;L0R588;E9PRG8 E9PLD3 60 67 C11orf98;C11orf48 Uncharacterized protein C11orf98 yes no 2 0.0079474 81.191 2 0.85759 0.95831 NaN 1 Median 0.85759 0.95831 NaN 1 0 Median NaN NaN NaN 0 0 Median 88102000 60811000 27291000 88102000 60811000 27291000 0 0 0 903 501 931 2462;2463 3849;3850 3849 2 ANLEESFPR ______________________________ ______________________________ M A N P R G 1 1 1 0 0 0 2 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 9 0 1061.5142 Q14690;B4DH82;B4DES7;S4R3Q4 Q14690 2 10 PDCD11 Protein RRP5 homolog yes no 1 0.0069818 44.349 1 0.82985 0.86283 NaN 1 Median 0.82985 0.86283 NaN 1 0 Median NaN NaN NaN 0 0 Median 20960000 10276000 10685000 20960000 10276000 10685000 0 0 0 904 1741 932 2464 3851 3851 1 ANLGVFSVFAPR LMPSNQQHKTDEKGRANLGVFSVFAPRGEH KGRANLGVFSVFAPRGEHTLQVKAIYNKSI R A N P R G 2 1 1 0 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 2 0 0 12 0 1276.6928 A6NHR9;J3KTL8 A6NHR9 1325 1336 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 1.5589E-08 121.83 2 2 1.0251 1.0857 6.3391 2 Median 1.0251 1.0857 6.3391 2 0 Median NaN NaN NaN 0 0 Median 58490000 30558000 27932000 53319000 25387000 27932000 5171600 5171600 0 905 684 933 2465;2466;2467;2468 3852;3853;3854;3855;3856;3857 3853 6 ANLNQHLTVHSVK RKYKCHLCPYAAKCRANLNQHLTVHSVKLV CRANLNQHLTVHSVKLVSTDTEDIVSAVTS R A N V K L 1 0 2 0 0 1 0 0 2 0 2 1 0 0 0 1 1 0 0 2 0 0 13 0 1459.7896 B3KSR1;G5E9Z1;Q17R98 B3KSR1 128 140 ZNF827 Zinc finger protein 827 yes no 2 0.0033906 65.347 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16433000 0 16433000 16433000 0 16433000 0 0 0 906 940 934 2469 3858 3858 1 ANLPQSFQVDTSK KVKCSGPGLSPGMVRANLPQSFQVDTSKAG VRANLPQSFQVDTSKAGVAPLQVKVQGPKG R A N S K A 1 0 1 1 0 2 0 0 0 0 1 1 0 1 1 2 1 0 0 1 0 0 13 0 1433.7151 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1465 1477 FLNA;FLJ00119 Filamin-A yes no 2 1.606E-16 127.87 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 907 1504 935 2470;2471 3859;3860 3860 2 ANLQELDQFLGPYPYATLK VDLSPAPESEVEAMRANLQELDQFLGPYPY ELDQFLGPYPYATLKKWISLTNFISEATVE R A N L K K 2 0 1 1 0 2 1 1 0 0 4 1 0 1 2 0 1 0 2 0 0 0 19 0 2180.1154 A2A2Q9;Q9Y312 A2A2Q9 113 131 AAR2 Protein AAR2 homolog yes no 2 0.00063286 49.929 1 1.358 1.378 NaN 1 Median 1.358 1.378 NaN 1 0 Median NaN NaN NaN 0 0 Median 6558100 2923600 3634600 6558100 2923600 3634600 0 0 0 908 647 936 2472 3861 3861 1 ANLQIDQINTDLNLER EEQGNTELINDRLKKANLQIDQINTDLNLE NLQIDQINTDLNLERSHAQKNENARQQLER K A N E R S 1 1 3 2 0 2 1 0 0 2 3 0 0 0 0 0 1 0 0 0 0 0 16 0 1868.9592 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1755 1770 MYH9;FLJ00279 Myosin-9 yes no 2 1.407E-13 125.03 2 2 2.0516 2.0846 15.743 4 Median 1.6592 1.9366 2.8422 2 0 Median 2.8114 2.436 14.461 2 0 Median 648940000 229380000 419560000 504740000 189260000 315470000 144210000 40115000 104090000 909 81 937 2473;2474;2475;2476 3862;3863;3864;3865;3866;3867;3868;3869 3864 8 ANLQQAIVTPLK NGTGGLFQGKTPLRKANLQQAIVTPLKPVD LRKANLQQAIVTPLKPVDNTYYKEAEKENL K A N L K P 2 0 1 0 0 2 0 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 12 0 1294.7609 Q643R0;Q9ULW0 Q643R0 64 75 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 6.7775E-06 107.45 1 1.357 1.1177 NaN 1 Median NaN NaN NaN 0 0 Median 1.357 1.1177 NaN 1 0 Median 10600000 4474700 6125200 0 0 0 10600000 4474700 6125200 910 1837 938 2477 3870 3870 0 ANLQQAIVTPLKPVDNTYYK NGTGGLFQGKTPLRKANLQQAIVTPLKPVD AIVTPLKPVDNTYYKEAEKENLVEQSIPSN K A N Y K E 2 0 2 1 0 2 0 0 0 1 2 2 0 0 2 0 2 0 2 2 0 0 20 1 2275.2212 Q643R0;Q9ULW0 Q643R0 64 83 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 4.3378E-18 98.269 1 2 1.2621 1.0727 3.8103 3 Median 0.89606 1.063 NaN 1 0 Median 1.3017 1.1059 4.316 2 0 Median 90310000 43389000 46920000 26786000 16886000 9900200 63524000 26504000 37020000 911 1837 939 2478;2479;2480 3871;3872;3873;3874;3875 3875 4 ANLSLLR GGRSEEKISDSEGFKANLSLLRRPGEKTYT ISDSEGFKANLSLLRRPGEKTYTQRCRLFV K A N L R R 1 1 1 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 785.47594 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 207 213 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.026774 78.616 2 1.8386 1.8832 15.216 2 Median 1.8386 1.8832 15.216 2 0 Median NaN NaN NaN 0 0 Median 38904000 16710000 22194000 38904000 16710000 22194000 0 0 0 912 1510 940 2481;2482 3876;3877;3878 3877 3 ANNPGIVLTFVLPTEQFHLGK PTPEAYIHRAGRTARANNPGIVLTFVLPTE VLTFVLPTEQFHLGKIEELLSGENRGPILL R A N G K I 1 0 2 0 0 1 1 2 1 1 3 1 0 2 2 0 2 0 0 2 0 0 21 0 2294.2423 Q9NY93;Q53HB9;H7C3E9 Q9NY93 379 399 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 3.5263E-16 108.17 4 0.94567 0.99528 9.1872 3 Median 0.94567 0.99528 9.1872 3 0 Median NaN NaN NaN 0 0 Median 125710000 62157000 63552000 125710000 62157000 63552000 0 0 0 913 2081 941 2483;2484;2485;2486 3879;3880;3881;3882;3883;3884 3879 6 ANNSQEPSPQLASSVASTR GTEHLKESEADNTKKANNSQEPSPQLASSV QEPSPQLASSVASTRSMPESLDSPTSGRPG K A N T R S 3 1 2 0 0 2 1 0 0 0 1 0 0 0 2 5 1 0 0 1 0 0 19 0 1942.9344 B7Z8X5;Q4W5K9;Q59FC9;B7Z481;A0A024RDE8;Q96HC4;H0Y8Y3 B7Z8X5 203 221 LIM;PDLIM5 PDZ and LIM domain protein 5 yes no 2 8.3908E-05 67.115 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 914 1105 942 2487 3885 3885 1 ANPALYVLR GSKPLIQQAMAKIMKANPALYVLRERIRKG MAKIMKANPALYVLRERIRKGLQLYSSEPT K A N L R E 2 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1015.5815 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1736 1744 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00096334 91.9 2 2 0.83841 0.82134 15.099 4 Median 0.84634 0.90941 6.8944 2 0 Median 0.83841 0.72305 10.514 2 0 Median 88563000 48026000 40537000 80350000 43731000 36619000 8213200 4295400 3917800 915 1854 943 2488;2489;2490;2491 3886;3887;3888;3889;3890;3891 3889 6 ANPDPNCCLGVFGLSLYTTER SHSPMSTRRRHVGNRANPDPNCCLGVFGLS CCLGVFGLSLYTTERDLREVFSKYGPIADV R A N E R D 1 1 2 1 2 0 1 2 0 0 3 0 0 1 2 1 2 0 1 1 0 0 21 0 2383.0937 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995 Q8N1H4 76 96 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2 5.3858E-08 72.417 2 1 1.1218 1.3064 30.589 3 Plateau 1.1205 1.2528 5.9279 2 0 Median 0.89083 0.74122 NaN 1 0 Median 129440000 61626000 67818000 107530000 49903000 57627000 21914000 11723000 10191000 916 889 944 2492;2493;2494 3892;3893;3894;3895;3896 3892 5 ANPDPNTCLGVFGLSLYTTER SHSPMSNRRRHTGSRANPDPNTCLGVFGLS TCLGVFGLSLYTTERDLREVFSRYGPLSGV R A N E R D 1 1 2 1 1 0 1 2 0 0 3 0 0 1 2 1 3 0 1 1 0 0 21 0 2324.1107 Q549U1;Q13595 Q549U1 113 133 HSU53209;TRA2A Transformer-2 protein homolog alpha yes no 2 1.9685E-06 49.482 1 1.1095 1.1014 NaN 1 Median 1.1095 1.1014 NaN 1 0 Median NaN NaN NaN 0 0 Median 16053000 8761400 7291900 16053000 8761400 7291900 0 0 0 917 1716 945 2495 3897;3898 3898 2 ANPFGGASHAK HDKQYKKAHLGTALKANPFGGASHAKGIVL TALKANPFGGASHAKGIVLEKVGVEAKQPN K A N A K G 3 0 1 0 0 0 0 2 1 0 0 1 0 1 1 1 0 0 0 0 0 0 11 0 1055.5148 A8K517;P62266;D6RD47;D6RDJ2;D6RIX0;D6R9I7 A8K517 38 48 RPS23 40S ribosomal protein S23 yes no 2;3 1.0869E-16 153.7 5 3 1.6472 1.4524 25.782 5 Median 0.80257 0.95096 2.7995 2 0 Median 1.701 1.5042 4.6818 3 0 Median 8658600000 5557300000 3101300000 7170900000 5014800000 2156100000 1487700000 542570000 945170000 918 744 946 2496;2497;2498;2499;2500;2501;2502;2503 3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913 3909 15 ANPQVGVAFPHIK DLDMVAIVRYAYDKRANPQVGVAFPHIKHN KRANPQVGVAFPHIKHNYECLVYVQLPFME R A N I K H 2 0 1 0 0 1 0 1 1 1 0 1 0 1 2 0 0 0 0 2 0 0 13 0 1376.7565 P13010;Q53T09 P13010 401 413 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 6.8494E-06 104.05 1 2 0.33655 0.37832 27.21 3 Plateau 0.33655 0.37832 NaN 1 0 Median 0.30038 0.23731 5.5559 2 0 Median 103560000 71280000 32279000 73110000 48425000 24685000 30449000 22855000 7594600 919 1476 947 2504;2505;2506 3914;3915;3916;3917 3914 4 ANPTQLNTVEFLWDPAK LDIDIPMSVGIIDPRANPTQLNTVEFLWDP PTQLNTVEFLWDPAKRTSVFIQVHCISTEF R A N A K R 2 0 2 1 0 1 1 0 0 0 2 1 0 1 2 0 2 1 0 1 0 0 17 0 1942.9789 A0A024R120;Q12800;F8VWL0;F8VX55 A0A024R120 165 181 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.00092457 44.457 2 1.1184 1.1277 NaN 1 Median 1.1184 1.1277 NaN 1 0 Median NaN NaN NaN 0 0 Median 11113000 4659700 6453500 11113000 4659700 6453500 0 0 0 920 66 948 2507;2508 3918;3919;3920 3920 3 ANSHFLVSAGSDR FLAHDQAVRTLQWCKANSHFLVSAGSDRKI CKANSHFLVSAGSDRKIKFWDLRRPYEPIN K A N D R K 2 1 1 1 0 0 0 1 1 0 1 0 0 1 0 3 0 0 0 1 0 0 13 0 1359.6531 Q8WUA4;Q53SY8;H0Y4Q6;H7C3X9 Q8WUA4 624 636 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.0034354 65.179 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2936700 0 2936700 2936700 0 2936700 0 0 0 921 1938 949 2509 3921 3921 1 ANSNLVLQADR ______________________________ YEYKANSNLVLQADRSLIDRTRRDEPTGEV K A N D R S 2 1 2 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1199.6258 O75643 O75643 15 25 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 3.0366E-05 100.88 2 2 1.0466 1.1037 5.2695 4 Linear 0.97325 1.0951 1.2498 2 0 Median 1.157 1.0039 2.477 2 0 Median 154140000 79409000 74726000 144860000 75172000 69692000 9271400 4237100 5034300 922 1411 950 2510;2511;2512;2513 3922;3923;3924;3925;3926;3927;3928 3922 7 ANSNPFEVK KASGAPAGARGGPAKANSNPFEVKVNRQKF RGGPAKANSNPFEVKVNRQKFQILGRKTRH K A N V K V 1 0 2 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 9 0 1004.4927 A8KA74;P78316;E9PFK5 A8KA74 27 35 NOP14 Nucleolar protein 14 yes no 2 1.0685E-07 138.78 2 1 1.0645 1.0358 13.247 3 Median 0.9869 1.111 9.9131 2 0 Median 1.1161 0.91445 NaN 1 0 Median 147670000 73866000 73809000 142690000 71494000 71193000 4988000 2372700 2615300 923 790 951 2514;2515;2516 3929;3930;3931;3932 3929 4 ANTVTPAVGR TQSIQGKGKGKRSSRANTVTPAVGRLEVSM KRSSRANTVTPAVGRLEVSMVKPTPGLTPR R A N G R L 2 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 2 0 0 10 0 984.53524 Q53HL2;A8K7A2;B4DXT3 Q53HL2 167 176 CDCA8 Borealin yes no 2 0.0029784 66.621 2 1.4652 1.1995 1.7404 2 Median NaN NaN NaN 0 0 Median 1.4652 1.1995 1.7404 2 0 Median 22670000 9052100 13618000 0 0 0 22670000 9052100 13618000 924 1789 952 2517;2518 3933;3934;3935;3936 3936 4 ANVELDHATLVR WSTKDFLQREHRSMRANVELDHATLVRFSP SMRANVELDHATLVRFSPDCRAFIVWLANG R A N V R F 2 1 1 1 0 0 1 0 1 0 2 0 0 0 0 0 1 0 0 2 0 0 12 0 1336.7099 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;B4DY59;A0A0S2Z5C1;A0A087WXC6 E9PF19 96 107 TBL2 Transducin beta-like protein 2 yes no 3 0.0026347 56.122 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28107000 0 28107000 28107000 0 28107000 0 0 0 925 582 953 2519 3937 3937 1 ANVNEILDFFHGYR SGRVTPIKIMNLPFKANVNEILDFFHGYRI KANVNEILDFFHGYRIIPDSVSIQYNEQGL K A N Y R I 1 1 2 1 0 0 1 1 1 1 1 0 0 2 0 0 0 0 1 1 0 0 14 0 1693.8213 B9ZVT1;Q8IXT5 B9ZVT1 816 829 RBM12B RNA-binding protein 12B yes no 3 6.6639E-05 66.989 2 2 1.1468 1.0844 9.488 4 Median 1.1468 1.171 5.9041 2 0 Median 1.1567 1.0122 4.788 2 0 Median 32385000 15636000 16749000 27351000 13221000 14130000 5034300 2415300 2619100 926 1122 954 2520;2521;2522;2523 3938;3939;3940;3941;3942;3943;3944;3945 3938 8 ANVVGNVWR GPHQARAAKLHGELRANVVGNVWRQYQATG LHGELRANVVGNVWRQYQATGFLWEQYSDR R A N W R Q 1 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 3 0 0 9 0 1013.5407 Q58F09;Q13724;A8K9K4 Q58F09 789 797 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.013074 60.682 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 927 1720 955 2524 3946 3946 1 ANWYFLLAR YIINGQKMWITNGGKANWYFLLARSDPDPK ITNGGKANWYFLLARSDPDPKAPANKAFTG K A N A R S 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 0 1 1 0 0 0 9 0 1152.608 B7Z9I1;B4DWX6;A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B4DVB1;A0A0S2Z3A5;B4DJE7;B4DVE0 B7Z9I1 162 170 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0021719 75.854 2 2.4711 2.5168 18.456 2 Median 2.4711 2.5168 18.456 2 0 Median NaN NaN NaN 0 0 Median 12713000 3597900 9115500 12713000 3597900 9115500 0 0 0 928 545 956 2525;2526 3947;3948;3949 3948 3 ANYAVDAYFR IAFTEWIEPPKRERKANYAVDAYFREALRV KRERKANYAVDAYFREALRVSEPKAPKAPR K A N F R E 3 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 0 10 0 1188.5564 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;D7EZH4 O60264 740 749 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.0010698 76.679 2 1 3.4071 3.3463 31.024 2 Median 2.3778 2.6871 NaN 1 0 Median 4.8821 4.1671 NaN 1 0 Median 175580000 69982000 105590000 137920000 63453000 74465000 37658000 6528600 31130000 929 1391 957 2527;2528;2529 3950;3951;3952;3953;3954 3950 5 APAHHPAAISTAK GVCSVLKGSEFMFEKAPAHHPAAISTAKFC EKAPAHHPAAISTAKFCIQEIEKSGGSKEA K A P A K F 5 0 0 0 0 0 0 0 2 1 0 1 0 0 2 1 1 0 0 0 0 0 13 0 1270.6782 B3KMR5;Q5JTH9 B3KMR5 274 286 RRP12 RRP12-like protein yes no 2;3 1.0868E-38 181.53 4 2 1.3328 1.3375 24.553 6 Median 1.4375 1.487 12.723 4 0 Median 1.1956 0.9636 0.043691 2 0 Median 92563000 36532000 56031000 85257000 33305000 51953000 7305600 3227200 4078400 930 907 958 2530;2531;2532;2533;2534;2535 3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966 3957 12 APAMFNIR KVVDPFSKKDWYDVKAPAMFNIRNIGKTLV KDWYDVKAPAMFNIRNIGKTLVTRTQGTKI K A P I R N 2 1 1 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 8 0 918.47456 Q6NXR8;A8K4W0;P61247;D6RG13;B7Z3M5;H0Y8L7;E9PFI5;H0Y9Y4;D6RI02 Q6NXR8 35 42 RPS3A 40S ribosomal protein S3a yes no 2 0.0031662 86.838 2 5 0.91197 0.76432 39.98 4 Median 1.2649 1.4426 NaN 1 0 Median 0.77895 0.65837 21.112 3 0 Median 236170000 145860000 90317000 205380000 125040000 80342000 30790000 20815000 9975400 931 742 959;960 2536;2537;2538;2539;2540;2541;2542 3967;3968;3969;3970;3971;3972;3973;3974;3975 3968 577 9 APAMQPAEIQFAQR ______________________________ MAPAMQPAEIQFAQRLASSEKGIRDRAVKK M A P Q R L 4 1 0 0 0 3 1 0 0 1 0 0 1 1 2 0 0 0 0 0 0 0 14 0 1556.7769 Q14684;Q6PJM8 Q14684 2 15 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 9.2432E-07 107.06 2 1 1.5987 1.5806 4.4057 3 Median 1.5462 1.6231 3.7515 2 0 Median 1.828 1.5271 NaN 1 0 Median 48389000 20636000 27753000 45062000 19414000 25648000 3326600 1221700 2104900 932 1740 961 2543;2544;2545 3976;3977;3978;3979 3978 1575 4 APASSLHTQEAGR EDWRNRLSRRQEGGKAPASSLHTQEAGRSL GKAPASSLHTQEAGRSLIKKRVTESRESQM K A P G R S 3 1 0 0 0 1 1 1 1 0 1 0 0 0 1 2 1 0 0 0 0 0 13 0 1323.6531 O95425;B4E3H1;Q659E9;A0A0J9YWY6 O95425 1155 1167 SVIL;DKFZp586H1823 Supervillin yes no 2 0.010686 41.399 1 1.8761 2.0111 NaN 1 Median 1.8761 2.0111 NaN 1 0 Median NaN NaN NaN 0 0 Median 3461500 1144900 2316600 3461500 1144900 2316600 0 0 0 933 1425 962 2546 3980 3980 1 APASVLPAATPR VEFAVEYFTRLREARAPASVLPAATPRQSL EARAPASVLPAATPRQSLGHPPPEPGPDRV R A P P R Q 4 1 0 0 0 0 0 0 0 0 1 0 0 0 3 1 1 0 0 1 0 0 12 0 1149.6506 A0A0S2Z472;A8KAH7;A0A024R2W3;P13861;C9J830;A0A0K0K1I3 A0A0S2Z472 45 56 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 0.0012602 61.593 1 1.8249 1.8351 NaN 1 Median 1.8249 1.8351 NaN 1 0 Median NaN NaN NaN 0 0 Median 11036000 3930000 7106000 11036000 3930000 7106000 0 0 0 934 124 963 2547 3981 3981 1 APDDLVAPVVK ______________________________ TKTKAPDDLVAPVVKKPHIYYGSLEEKERE K A P V K K 2 0 0 2 0 0 0 0 0 0 1 1 0 0 2 0 0 0 0 3 0 0 11 0 1122.6285 Q6IAP9;Q5T1M7;Q59EL4;O43172;B2R7V4 Q6IAP9 15 25 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 2 9.8957E-09 123.86 2 1 1.3588 1.3898 39.494 3 Plateau 1.2892 1.3188 7.4142 2 0 Median 0.80121 0.66948 NaN 1 0 Median 48803000 20847000 27956000 46987000 19813000 27174000 1816100 1033600 782460 935 1381 964 2548;2549;2550 3982;3983;3984;3985;3986 3983 5 APDEETLIALLAHAK LKQWEYCGQPKVVVKAPDEETLIALLAHAK APDEETLIALLAHAKMLGLTVSLIQDAGRT K A P A K M 4 0 0 1 0 0 2 0 1 1 3 1 0 0 1 0 1 0 0 0 0 0 15 0 1590.8617 Q96ME4;J3KQ48;Q9Y3E5 Q96ME4 120 134 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 3 0.00024131 50.088 2 1 0.72645 0.75257 4.158 3 Median 0.71491 0.73213 3.894 2 0 Median 0.96613 0.77273 NaN 1 0 Median 33073000 18122000 14951000 24248000 13480000 10768000 8824700 4642200 4182500 936 1329 965 2551;2552;2553 3987;3988;3989;3990;3991;3992 3990 6 APDVAPEEVDESK AAAVAPPERGVGNGRAPDVAPEEVDESKKE GRAPDVAPEEVDESKKEDFSEADLVDVSAY R A P S K K 2 0 0 2 0 0 3 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 13 0 1384.6358 D3DTX6;Q96SB3 D3DTX6 371 383 PPP1R9B Neurabin-2 yes no 2 0.00012689 78.653 2 1.1086 1.0905 NaN 1 Median 1.1086 1.0905 NaN 1 0 Median NaN NaN NaN 0 0 Median 8660400 4398500 4262000 8660400 4398500 4262000 0 0 0 937 1190 966 2554;2555 3993;3994;3995 3993 3 APEAAAAEREEVAYDPEDETILEEAK DTQLVERGRRHEVERAPEAAAAEREEVAYD VAYDPEDETILEEAKVTVDDLPNRMCADVR R A P A K V 7 1 0 2 0 0 8 0 0 1 1 1 0 0 2 0 1 0 1 1 0 0 26 1 2845.3141 Q9BTC0 Q9BTC0 1413 1438 DIDO1 Death-inducer obliterator 1 yes yes 3 7.3874E-14 83.312 1 0.6112 0.68049 NaN 1 Median 0.6112 0.68049 NaN 1 0 Median NaN NaN NaN 0 0 Median 19974000 11116000 8857500 19974000 11116000 8857500 0 0 0 938 2002 967 2556 3996;3997 3997 2 APEDFSQNWK KKPASGPGAVVRPPKAPEDFSQNWKALQEW VRPPKAPEDFSQNWKALQEWLLKQKSQAPE K A P W K A 1 0 1 1 0 1 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 10 0 1220.5462 Q9GZR2;A0A0C4DG31 Q9GZR2 62 71 REXO4 RNA exonuclease 4 yes no 2 0.010458 53.327 1 0.83641 0.68981 NaN 1 Median NaN NaN NaN 0 0 Median 0.83641 0.68981 NaN 1 0 Median 1837700 922690 915050 0 0 0 1837700 922690 915050 939 2021 968 2557 3998 3998 1 APEMTNELK KERQKTAGDGWFGMKAPEMTNELKNDLKAL GWFGMKAPEMTNELKNDLKALKMRASMDPK K A P L K N 1 0 1 0 0 0 2 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 9 0 1031.4957 Q5QJE6 Q5QJE6 650 658 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.017472 52.937 1 1.56 1.258 NaN 1 Median NaN NaN NaN 0 0 Median 1.56 1.258 NaN 1 0 Median 2996500 1154800 1841700 0 0 0 2996500 1154800 1841700 940 1813 969 2558 3999 3999 1 APEPTPQQVAQQQ LQMSERNILSRLANRAPEPTPQQVAQQQ__ NRAPEPTPQQVAQQQ_______________ R A P Q Q - 2 0 0 0 0 5 1 0 0 0 0 0 0 0 3 0 1 0 0 1 0 0 13 0 1420.6947 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1893 1905 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 4.326E-06 102.52 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67527000 0 0 67527000 0 0 0 0 0 941 515 970 2559;2560 4000;4001;4002 4001 3 APEQRPAPNAAPVDPTLR IFAILQSVKAREEGRAPEQRPAPNAAPVDP QRPAPNAAPVDPTLRTKQPIPAAYNRYDQE R A P L R T 4 2 1 1 0 1 1 0 0 0 1 0 0 0 5 0 1 0 0 1 0 0 18 1 1898.9963 Q6P1J9;A0A0S2Z5M9;B4DV47;A0A0S2Z5N1 Q6P1J9 264 281 CDC73 Parafibromin yes no 3 8.0123E-07 86.213 2 2 1.7848 1.8435 15.24 4 Median 1.7848 1.9978 3.0051 2 0 Median 1.7786 1.5883 12.705 2 0 Median 129520000 51438000 78081000 121450000 48516000 72931000 8072800 2922400 5150400 942 1851 971 2561;2562;2563;2564 4003;4004;4005;4006;4007;4008;4009 4005 7 APETEPIDVAAHLQLLGESLSLIGHR KSPPTTMLLPASPAKAPETEPIDVAAHLQL HLQLLGESLSLIGHRLQETEGMVAVSGSLS K A P H R L 3 1 0 1 0 1 3 2 2 2 5 0 0 0 2 2 1 0 0 1 0 0 26 0 2765.4712 Q2M3X1;B4DSN8;Q9UGU5 Q2M3X1 407 432 HMGXB4 HMG domain-containing protein 4 yes no 4 0.0006265 35.179 2 1.0865 1.092 20.077 2 Median 1.0865 1.092 20.077 2 0 Median NaN NaN NaN 0 0 Median 26881000 12393000 14487000 26881000 12393000 14487000 0 0 0 943 1030 972 2565;2566 4010;4011 4011 2 APFDLFENK EGQLEFRALLFIPRRAPFDLFENKKKKNNI LFIPRRAPFDLFENKKKKNNIKLYVRRVFI R A P N K K 1 0 1 1 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 9 0 1079.5288 B4DMA2;A0A024RD80;P08238;B4DGL0;Q58FF7 B4DMA2 301 309 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 0.0011742 88.948 2 1.9993 2.0824 10.103 2 Median 1.9993 2.0824 10.103 2 0 Median NaN NaN NaN 0 0 Median 61311000 20576000 40735000 61311000 20576000 40735000 0 0 0 944 379 973 2567;2568 4012;4013;4014;4015 4015 4 APFDLFENRK EGQLEFRALLFVPRRAPFDLFENRKKKNNI FVPRRAPFDLFENRKKKNNIKLYVRRVFIM R A P R K K 1 1 1 1 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 10 1 1235.6299 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 347 356 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 0.014996 49.3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 945 1348 974 2569 4016 4016 1 APFHQLR ISIKKALDTKIGRYKAPFHQLRISYGTNKG DTKIGRYKAPFHQLRISYGTNKGKNYTEEE K A P L R I 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 7 0 867.47152 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 930 936 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.023674 90.836 2 2.9712 3.404 20.325 2 Median 2.9712 3.404 20.325 2 0 Median NaN NaN NaN 0 0 Median 282770000 72918000 209850000 282770000 72918000 209850000 0 0 0 946 1391 975 2570;2571 4017;4018;4019;4020 4018 4 APGAEEDDSELQR APKTKEKNTKKVDHRAPGAEEDDSELQRAW HRAPGAEEDDSELQRAWGALIKEKEQSRQK R A P Q R A 2 1 0 2 0 1 3 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 13 0 1415.6165 Q53F19;K7ELP6 Q53F19 567 579 C17orf85 Uncharacterized protein C17orf85 yes no 2 0.0024253 69.672 1 1 0.66953 0.59531 NaN 1 Median NaN NaN NaN 0 0 Median 0.66953 0.59531 NaN 1 0 Median 5815200 5418400 396750 4917100 4917100 0 898110 501360 396750 947 1783 976 2572;2573 4021;4022 4021 2 APGAEEYAQQDVLK PGVLHCTTKFCDYGKAPGAEEYAQQDVLKK KAPGAEEYAQQDVLKKSYSKAFTLTISALF K A P L K K 3 0 0 1 0 2 2 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 14 0 1517.7362 B4DFN6;B4DI06;A0A024R1T5;P09543 B4DFN6 27 40 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 2 5.5505E-05 92.247 2 1.4574 1.5113 5.9444 2 Median 1.4574 1.5113 5.9444 2 0 Median NaN NaN NaN 0 0 Median 21925000 10314000 11611000 21925000 10314000 11611000 0 0 0 948 88 977 2574;2575 4023;4024;4025 4023 3 APGAGLGQDR SSSWLTRRAIRPENRAPGAGLGQDRQVPLW RPENRAPGAGLGQDRQVPLWGQLLLFLVFV R A P D R Q 2 1 0 1 0 1 0 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 10 0 940.47264 P50402;Q5HY57 P50402 212 221 EMD Emerin yes no 2 0.0078188 56.916 1 0.63684 0.66004 NaN 1 Median 0.63684 0.66004 NaN 1 0 Median NaN NaN NaN 0 0 Median 20541000 13487000 7053400 20541000 13487000 7053400 0 0 0 949 1590 978 2576 4026 4026 1 APGCVLSNPDQK PECREDFVLSITGKKAPGCVLSNPDQKGKM GKKAPGCVLSNPDQKGKMRRIDCLRQADKV K A P Q K G 1 0 1 1 1 1 0 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 12 0 1284.6132 Q6FI30;B7Z4T6;P08651 Q6FI30 92 103 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 2 0.0098911 46.796 1 0.8034 0.67178 NaN 1 Median NaN NaN NaN 0 0 Median 0.8034 0.67178 NaN 1 0 Median 1827300 779680 1047600 0 0 0 1827300 779680 1047600 950 1091 979 2577 4027 4027 1 APGDSTTSDASLAQK LSHMKPGEEGPDGERAPGDSTTSDASLAQK APGDSTTSDASLAQKPNKPAVPEAPIAKKE R A P Q K P 3 0 0 2 0 1 0 1 0 0 1 1 0 0 1 3 2 0 0 0 0 0 15 0 1447.6791 Q7Z5J4 Q7Z5J4 961 975 RAI1 Retinoic acid-induced protein 1 yes yes 2 2.6694E-05 87.719 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3014900 0 3014900 3014900 0 3014900 0 0 0 951 1879 980 2578 4028 4028 1 APGEQTVPALNLQNAFR ATFVKEITYRASNIKAPGEQTVPALNLQNA GEQTVPALNLQNAFRIIKEVQKRYKTREAE K A P F R I 3 1 2 0 0 2 1 1 0 0 2 0 0 1 2 0 1 0 0 1 0 0 17 0 1824.9482 Q9Y5B9 Q9Y5B9 607 623 SUPT16H FACT complex subunit SPT16 yes yes 2 3.087E-26 144.57 3 2 0.946 0.98344 9.548 3 Plateau 0.83121 0.98344 NaN 1 0 Median 1.0121 0.88077 10.064 2 0 Median 1099500000 585000000 514540000 722170000 395770000 326400000 377360000 189230000 188130000 952 2148 981 2579;2580;2581;2582;2583 4029;4030;4031;4032;4033;4034;4035;4036;4037;4038;4039 4035 11 APGLGAFR EKMYERMYAALGDPKAPGLGAFRRKFIQTF AALGDPKAPGLGAFRRKFIQTFGKEFDKHF K A P F R R 2 1 0 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 8 0 787.43407 P78527 P78527 3622 3629 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0010378 113.08 2 1 0.71273 0.7943 53.231 3 Median 0.74635 0.84622 8.9536 2 0 Median 0.40822 0.33877 NaN 1 0 Median 160740000 89738000 70997000 154950000 85662000 69285000 5788300 4076600 1711800 953 1665 982 2584;2585;2586 4040;4041;4042;4043;4044 4043 5 APGSGLALLPLK LERLTYHQLLERCVRAPGSGLALLPLKITF CVRAPGSGLALLPLKITFRSMGGAVSAAEL R A P L K I 2 0 0 0 0 0 0 2 0 0 4 1 0 0 2 1 0 0 0 0 0 0 12 0 1135.6965 A0A075B730;A0A087X1U6;P58107 A0A075B730 196 207 EPPK1 Epiplakin no no 2 1.4265E-28 151.83 2 1 2.0438 1.855 19.398 2 Median 2.0584 2.1278 NaN 1 0 Median 2.0293 1.6173 NaN 1 0 Median 34298000 7383100 26915000 32315000 6562800 25752000 1983200 820310 1162900 954 397;1622 983 2587;2588;2589 4045;4046;4047;4048;4049 4048 5 APGTNVAMASNQAVR ALFKCKFEEAQSILKAPGTNVAMASNQAVR APGTNVAMASNQAVRIVKEPTSHDNKDICK K A P V R I 4 1 2 0 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 2 0 0 15 0 1485.7358 P49792;Q13073 P49792 1307 1321 RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 0.00069651 71.176 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 955 1588 984 2590 4050 4050 1369 1 APIDTSDVEEK ESIANQRITAFKMEKAPIDTSDVEEKAEEI KMEKAPIDTSDVEEKAEEIIAEAEPPSEVV K A P E K A 1 0 0 2 0 0 2 0 0 1 0 1 0 0 1 1 1 0 0 1 0 0 11 0 1202.5667 B4DXG8;A5PLM5;Q06265;D6RIY6 B4DXG8 301 311 EXOSC9 Exosome complex component RRP45 yes no 2 1.2129E-12 145.25 2 2 1.0157 0.90169 13.02 4 Median 0.98273 1.0071 6.9132 2 0 Median 1.0157 0.81761 5.1171 2 0 Median 56197000 26466000 29730000 45005000 20982000 24022000 11192000 5484200 5707700 956 675 985 2591;2592;2593;2594 4051;4052;4053;4054;4055;4056;4057;4058 4053 8 APIIAVTR KSGRSAHQVARYRPRAPIIAVTRNPQTARQ VARYRPRAPIIAVTRNPQTARQAHLYRGIF R A P T R N 2 1 0 0 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 8 0 839.52289 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3;H3BR70 V9HWB8 448 455 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 0.0074903 82.716 2 2.5645 2.9396 4.8462 2 Median 2.5645 2.9396 4.8462 2 0 Median NaN NaN NaN 0 0 Median 285810000 77064000 208750000 285810000 77064000 208750000 0 0 0 957 1481 986 2595;2596 4059;4060 4060 2 APILIATDVASR QQERDWVLNEFKHGKAPILIATDVASRGLD HGKAPILIATDVASRGLDVEDVKFVINYDY K A P S R G 3 1 0 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 1 0 0 12 0 1225.703 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;Q59F66;Q92841;B4DZQ7;A0A0U1RQJ0 B4DN41 381 392 DDX5;DKFZp686J01190;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 2 1.7582E-05 104.52 2 2 1.1645 1.1604 39.885 4 Median 1.3991 1.6221 0.37474 2 0 Median 0.9638 0.81356 3.2167 2 0 Median 436240000 184620000 251620000 392030000 162020000 230000000 44210000 22595000 21615000 958 1009;1801 987 2597;2598;2599;2600 4061;4062;4063;4064;4065;4066;4067 4061 7 APIRPDIVNFVHTNLR GESSGKNVTLPAVFKAPIRPDIVNFVHTNL PIRPDIVNFVHTNLRKNNRQPYAVSELAGH K A P L R K 1 2 2 1 0 0 0 0 1 2 1 0 0 1 2 0 1 0 0 2 0 0 16 1 1861.0323 P36578;Q59GY2;B4DMJ6;B4DFI6;H3BTP7;H3BU31;B4DP82 P36578 30 45 RPL4 60S ribosomal protein L4 yes no 3;4 4.4695E-09 103.13 3 4 1.0017 0.93494 11.888 7 Median 0.92357 1.0962 10.014 3 0 Median 1.0072 0.896 7.3123 4 0 Median 636040000 352730000 283310000 454510000 266580000 187930000 181520000 86144000 95379000 959 1548 988 2601;2602;2603;2604;2605;2606;2607 4068;4069;4070;4071;4072;4073;4074;4075;4076;4077;4078;4079;4080;4081;4082;4083;4084;4085;4086 4069 18 APIRPDIVNFVHTNLRK GESSGKNVTLPAVFKAPIRPDIVNFVHTNL IRPDIVNFVHTNLRKNNRQPYAVSELAGHQ K A P R K N 1 2 2 1 0 0 0 0 1 2 1 1 0 1 2 0 1 0 0 2 0 0 17 2 1989.1272 P36578;Q59GY2;B4DMJ6;B4DFI6;H3BTP7;H3BU31;B4DP82 P36578 30 46 RPL4 60S ribosomal protein L4 yes no 4 0.044026 18.784 2 1.0054 0.96804 6.299 2 Median NaN NaN NaN 0 0 Median 1.0054 0.96804 6.299 2 0 Median 25987000 11790000 14197000 0 0 0 25987000 11790000 14197000 960 1548 989 2608;2609 4087;4088 4088 1 APIVTVGVNNDPADVR NKRTQIVTEIISEIRAPIVTVGVNNDPADV PIVTVGVNNDPADVRKKELKMAEIKVKLIE R A P V R K 2 1 2 2 0 0 0 1 0 1 0 0 0 0 2 0 1 0 0 4 0 0 16 0 1635.858 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 471 486 NCAPG Condensin complex subunit 3 no no 2 1.4806E-33 151.55 3 2 1.1459 1.1589 19.158 4 Median 0.83462 0.97848 1.836 2 0 Median 1.5696 1.3627 0.80096 2 0 Median 949060000 480220000 468840000 770440000 411410000 359030000 178620000 68809000 109810000 961 1995;1289 990 2610;2611;2612;2613;2614 4089;4090;4091;4092;4093;4094;4095;4096;4097;4098;4099;4100;4101;4102 4096 14 APLAVTSQVINCR LSVILMLEVGEGSHRAPLAVTSQVINCRNQ HRAPLAVTSQVINCRNQAVQFISALVDELK R A P C R N 2 1 1 0 1 1 0 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 13 0 1427.7555 P42695;G3V1A9;E9PKK4 P42695 319 331 NCAPD3 Condensin-2 complex subunit D3 yes no 2 8.3339E-19 143.4 2 2 1.2598 1.2093 27.177 4 Median 0.89172 0.94892 2.7192 2 0 Median 1.8018 1.5181 0.59495 2 0 Median 66041000 35785000 30256000 50079000 29667000 20412000 15962000 6117600 9844500 962 1565 991 2615;2616;2617;2618 4103;4104;4105;4106;4107;4108;4109 4106 7 APLNIPGTPVLEDFPQNDDEK SSPSERVFPMPLPRKAPLNIPGTPVLEDFP GTPVLEDFPQNDDEKERLQRRRSRVFDLQF K A P E K E 1 0 2 3 0 1 2 1 0 1 2 1 0 1 4 0 1 0 0 1 0 0 21 0 2308.1223 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470;C9JZP1 A8K4T8 42 62 NCAPH Condensin complex subunit 2 yes no 2 1.8175E-11 97.273 2 2 1.2295 1.2282 21.738 4 Median 0.88417 1.0234 1.0062 2 0 Median 1.7261 1.4898 2.5163 2 0 Median 726430000 339150000 387280000 456660000 243340000 213320000 269770000 95808000 173960000 963 740 992 2619;2620;2621;2622 4110;4111;4112;4113;4114;4115;4116;4117 4111 8 APLPDLYPFGTMR VTRPEPQALPSPAIRAPLPDLYPFGTMRGG IRAPLPDLYPFGTMRGGGFGDRDRDRDRGG R A P M R G 1 1 0 1 0 0 0 1 0 0 2 0 1 1 3 0 1 0 1 0 0 0 13 0 1476.7435 Q59F66;Q92841 Q59F66 71 83 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.0163 43.297 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 964 1801 993 2623;2624 4118;4119 4118 1665 2 APLQQCAEDR LELPELGCVEMTDLKAPLQQCAEDRQICPS MTDLKAPLQQCAEDRQICPSLAGFQFTQWD K A P D R Q 2 1 0 1 1 2 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1186.5401 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470;C9JZP1 A8K4T8 304 313 NCAPH Condensin complex subunit 2 yes no 2 3.2478E-65 219.7 2 0.58262 0.66259 29.667 2 Median 0.58262 0.66259 29.667 2 0 Median NaN NaN NaN 0 0 Median 187620000 106350000 81270000 187620000 106350000 81270000 0 0 0 965 740 994 2625;2626 4120;4121 4120 2 APNTPASGANGDGSMSQTQSGSTVK ASIVVYWNYQNSTCRAPNTPASGANGDGSM GDGSMSQTQSGSTVKATYATSDFTLLELNN R A P V K A 3 0 2 1 0 2 0 4 0 0 0 1 1 0 2 5 3 0 0 1 0 0 25 0 2349.0503 CON__P15636 CON__P15636 287 311 yes yes 2;3 0 332.29 9 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2525200000 2525200000 0 2268900000 2268900000 0 256320000 256320000 0 + 966 1163 995;996 2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637 4122;4123;4124;4125;4126;4127;4128;4129;4130;4131;4132 4124 877 11 APNTPDILEIEFK QAPPGLYTKTQDPAKAPNTPDILEIEFKKG AKAPNTPDILEIEFKKGVPVKVTNVKDGTT K A P F K K 1 0 1 1 0 0 2 0 0 2 1 1 0 1 2 0 1 0 0 0 0 0 13 0 1485.7715 Q5T6L4;P00966;A8KAP9;B4E395 Q5T6L4 216 228 ASS;ASS1 Argininosuccinate synthase yes no 2 3.2229E-14 126.71 3 1 2.0269 1.7053 NaN 1 Median NaN NaN NaN 0 0 Median 2.0269 1.7053 NaN 1 0 Median 39691000 656230 39034000 37549000 0 37549000 2141900 656230 1485600 967 1437 997 2638;2639;2640;2641 4133;4134;4135;4136 4135 4 APNTPDILEIEFKK QAPPGLYTKTQDPAKAPNTPDILEIEFKKG KAPNTPDILEIEFKKGVPVKVTNVKDGTTH K A P K K G 1 0 1 1 0 0 2 0 0 2 1 2 0 1 2 0 1 0 0 0 0 0 14 1 1613.8665 Q5T6L4;P00966;A8KAP9;B4E395 Q5T6L4 216 229 ASS;ASS1 Argininosuccinate synthase yes no 3 9.4773E-05 80.102 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12834000 0 12834000 12834000 0 12834000 0 0 0 968 1437 998 2642 4137 4137 1 APPPGLPAETIK VFEHVDQDLRTYLDKAPPPGLPAETIKDLM LDKAPPPGLPAETIKDLMRQFLRGLDFLHA K A P I K D 2 0 0 0 0 0 1 1 0 1 1 1 0 0 4 0 1 0 0 0 0 0 12 0 1189.6707 F8VZZ0;F8VZ51;Q6LC83;A0A024RBB6;P11802;F8VXD2;F8VYH9;F8VTV8;F8VWX7 F8VZZ0 33 44 CDK4 Cyclin-dependent kinase 4 yes no 2 0.013122 53.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4996800 0 4996800 4996800 0 4996800 0 0 0 969 331 999 2643 4138 4138 1 APPTACYAGAAPAPSQVK SSSSPPGTPSPADAKAPPTACYAGAAPAPS TACYAGAAPAPSQVKSKAKKTVDKHSDEYK K A P V K S 6 0 0 0 1 1 0 1 0 0 0 1 0 0 4 1 1 0 1 1 0 0 18 0 1755.8614 P17676;Q99557;Q9BSC0 P17676 243 260 CEBPB CCAAT/enhancer-binding protein beta yes no 2 2.3016E-16 140.08 2 2 1.2048 1.0794 26.517 4 Median 0.81554 0.84839 10.207 2 0 Median 1.6408 1.3239 5.02 2 0 Median 63440000 35208000 28232000 42302000 26837000 15465000 21138000 8371200 12767000 970 1493 1000 2644;2645;2646;2647 4139;4140;4141;4142;4143;4144;4145;4146;4147;4148 4140 10 APPVDDAEVDELVLQTK RPGKKPHSTRRSQPKAPPVDDAEVDELVLQ PVDDAEVDELVLQTKRSSRRQSLELQKCEE K A P T K R 2 0 0 3 0 1 2 0 0 0 2 1 0 0 2 0 1 0 0 3 0 0 17 0 1837.9309 Q9UIG0 Q9UIG0 1319 1335 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 6.1457E-74 184.21 2 2 35.005 29.876 8.837 2 Median NaN NaN NaN 0 0 Median 35.005 29.876 8.837 2 0 Median 415260000 5091900 410170000 263810000 0 263810000 151440000 5091900 146350000 971 2103 1001 2648;2649;2650;2651 4149;4150;4151;4152;4153;4154;4155 4150 7 APQETYADIGGLDNQIQEIK MDDTDPLVTVMKVEKAPQETYADIGGLDNQ YADIGGLDNQIQEIKESVELPLTHPEYYEE K A P I K E 2 0 1 2 0 3 2 2 0 3 1 1 0 0 1 0 1 0 1 0 0 0 20 0 2202.0804 Q53XL8;Q53HB3;P62191;G3V4X1 Q53XL8 179 198 PSMC1 26S protease regulatory subunit 4 yes no 2 3.8228E-10 99.566 2 1 2.1453 2.1839 32.158 3 Median 2.2777 2.3169 8.3571 2 0 Median 1.6461 1.3401 NaN 1 0 Median 38020000 12949000 25071000 30750000 10088000 20662000 7269900 2861300 4408600 972 1634 1002 2652;2653;2654 4156;4157;4158;4159;4160;4161 4159 6 APQMYEFHLPLSPEELLK ______________________________ MYEFHLPLSPEELLKSGGVNQYVVQEVLSI M A P L K S 1 0 0 0 0 1 3 0 1 0 4 1 1 1 3 1 0 0 1 0 0 0 18 0 2141.0867 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00;A0PJ76;F5GZK7;F5H431 B3KMS0 2 19 NCAPD2 Condensin complex subunit 1 yes no 3 3.2888E-05 48.907 1 0.88559 0.9532 NaN 1 Median 0.88559 0.9532 NaN 1 0 Median NaN NaN NaN 0 0 Median 33276000 16364000 16912000 33276000 16364000 16912000 0 0 0 973 908 1003 2655 4162 4162 735 1 APQVLVLAPTR IEKLHGELQDRKRGRAPQVLVLAPTRELAN KRGRAPQVLVLAPTRELANQVSKDFSDITK R A P T R E 2 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 1 0 0 2 0 0 11 0 1163.7026 Q9NR30 Q9NR30 260 270 DDX21 Nucleolar RNA helicase 2 yes yes 2 8.5874E-11 136.63 2 2 1.137 1.1332 15.396 4 Median 1.1084 1.2991 1.3431 2 0 Median 1.1488 0.9954 0.35128 2 0 Median 805980000 376530000 429450000 706660000 330750000 375910000 99317000 45777000 53540000 974 2065 1004 2656;2657;2658;2659 4163;4164;4165;4166;4167;4168;4169;4170;4171;4172 4167 10 APQVVAEAAK YSESAKKEVVAEVVKAPQVVAEAAKTAKRK AEVVKAPQVVAEAAKTAKRKRESESESDET K A P A K T 4 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 2 0 0 10 0 982.54475 O60832 O60832 434 443 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 3.3269E-10 136.57 2 2 0.79174 0.73201 18.311 4 Median 0.77299 0.87202 6.6918 2 0 Median 0.79174 0.63968 1.0082 2 0 Median 266230000 147520000 118710000 252740000 139530000 113210000 13490000 7986900 5502700 975 1398 1005 2660;2661;2662;2663 4173;4174;4175;4176;4177;4178;4179;4180 4175 8 APSAGSDFAATSGTLTVTNLLEK GSSLPSAASSCAEARAPSAGSDFAATSGTL AATSGTLTVTNLLEKVDDKIPKTFQNSLIH R A P E K V 4 0 1 1 0 0 1 2 0 0 3 1 0 1 1 3 4 0 0 1 0 0 23 0 2250.138 Q8NB90 Q8NB90 32 54 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 8.1736E-12 89.506 2 1.1901 1.2019 6.9024 2 Median 1.1901 1.2019 6.9024 2 0 Median NaN NaN NaN 0 0 Median 23511000 12762000 10750000 23511000 12762000 10750000 0 0 0 976 1919 1006 2664;2665 4181;4182;4183;4184;4185 4182 5 APSHVPFLLIGGGTAAFAAAR AALSASEGEEVPQDKAPSHVPFLLIGGGTA FLLIGGGTAAFAAARSIRARDPGARVLIVS K A P A R S 6 1 0 0 0 0 0 3 1 1 2 0 0 2 2 1 1 0 0 1 0 0 21 0 2023.1003 O95831;Q5RZA0 O95831 128 148 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 3 4.9953E-06 47.814 1 2 1.3124 1.1035 1.6422 2 Median NaN NaN NaN 0 0 Median 1.3124 1.1035 1.6422 2 0 Median 19870000 4722500 15148000 8826400 0 8826400 11044000 4722500 6321200 977 1431 1007 2666;2667;2668 4186;4187;4188;4189;4190 4189 5 APSIIFIDELDAIGTK GAKLVRDAFALAKEKAPSIIFIDELDAIGT PSIIFIDELDAIGTKRFDSEKAGDREVQRT K A P T K R 2 0 0 2 0 0 1 1 0 4 1 1 0 1 1 1 1 0 0 0 0 0 16 0 1701.9189 E9PM69;R4GNH3;A0A140VK42;P17980;A8K781;E9PKD5;E9PMD8;E9PN50 E9PM69 237 252 PSMC3 26S protease regulatory subunit 6A yes no 2 3.8413E-68 194.24 2 2.3257 2.4491 2.4537 2 Median 2.3257 2.4491 2.4537 2 0 Median NaN NaN NaN 0 0 Median 66817000 19721000 47096000 66817000 19721000 47096000 0 0 0 978 617 1008 2669;2670 4191;4192;4193 4192 3 APSLTNDEVEEFR KELVRSQADKVIEPRAPSLTNDEVEEFRAY PRAPSLTNDEVEEFRAYFNEKMSILQKGGK R A P F R A 1 1 1 1 0 0 3 0 0 0 1 0 0 1 1 1 1 0 0 1 0 0 13 0 1505.6998 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 537 549 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.012447 58.511 1 0.83294 0.86077 NaN 1 Median 0.83294 0.86077 NaN 1 0 Median NaN NaN NaN 0 0 Median 13900000 7695700 6204600 13900000 7695700 6204600 0 0 0 979 1708 1009 2671 4194 4194 0 APSSLSDAVPQR EEKMIPPTKPEIQAKAPSSLSDAVPQRADH QAKAPSSLSDAVPQRADHRVVGTIDQLVKR K A P Q R A 2 1 0 1 0 1 0 0 0 0 1 0 0 0 2 3 0 0 0 1 0 0 12 0 1226.6255 M0R3F6;A8K5G0;A0A024R7K0;M0R2Z9;Q8IX01;B4DSQ4 M0R3F6 570 581 SUGP2;SFRS14 SURP and G-patch domain-containing protein 2 yes no 2 8.9675E-07 101.38 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4548800 0 4548800 4548800 0 4548800 0 0 0 980 228 1010 2672;2673 4195;4196 4195 2 APSTWEESGLR QEQREKQPLEESASRAPSTWEESGLRYDKA SASRAPSTWEESGLRYDKAYPGDRRLSSVM R A P L R Y 1 1 0 0 0 0 2 1 0 0 1 0 0 0 1 2 1 1 0 0 0 0 11 0 1231.5833 Q9HC36;I3L0T6;I3L443 Q9HC36 83 93 RNMTL1 rRNA methyltransferase 3, mitochondrial yes no 2 0.0081792 51.268 1 1.1759 1.0632 NaN 1 Median NaN NaN NaN 0 0 Median 1.1759 1.0632 NaN 1 0 Median 2203600 954690 1248900 0 0 0 2203600 954690 1248900 981 2051 1011 2674 4197 4197 1 APSTYGGGLSVSSR GSSRISSVLAGGSCRAPSTYGGGLSVSSRF RAPSTYGGGLSVSSRFSSGGACGLGGGYGG R A P S R F 1 1 0 0 0 0 0 3 0 0 1 0 0 0 1 4 1 0 1 1 0 0 14 0 1337.6575 CON__P08779;P08779 CON__P08779 42 55 KRT16 Keratin, type I cytoskeletal 16 yes no 2 4.1993E-31 145.91 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121880000 121880000 0 112040000 112040000 0 9835600 9835600 0 + 982 1159 1012 2675;2676;2677;2678 4198;4199;4200;4201;4202 4200 5 APSTYGGGLSVSSSR GSSRISSVLAGGSCRAPSTYGGGLSVSSSR APSTYGGGLSVSSSRFSSGGAYGLGGGYGG R A P S R F 1 1 0 0 0 0 0 3 0 0 1 0 0 0 1 5 1 0 1 1 0 0 15 0 1424.6896 CON__P02533;P02533 CON__P02533 42 56 KRT14 Keratin, type I cytoskeletal 14 yes no 2 2.1227E-34 151.55 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 983 1150 1013 2679;2680;2681 4203;4204;4205 4203 3 APTNIVYK ISQVTIVGIIRHAEKAPTNIVYKIDDMTAA IIRHAEKAPTNIVYKIDDMTAAPMDVRQWV K A P Y K I 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 1 1 0 0 8 0 904.50182 B2R7E8;P15927;Q5TEJ7 B2R7E8 86 93 RPA2 Replication protein A 32 kDa subunit yes no 2 0.049526 50.127 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4200200 4200200 0 4200200 4200200 0 0 0 0 984 850 1014 2682 4206 4206 1 APTSTEANHIR WQQSSLSLRWASRLRAPTSTEANHIRLSCL SRLRAPTSTEANHIRLSCLAVGLALLKRCV R A P I R L 2 1 1 0 0 0 1 0 1 1 0 0 0 0 1 1 2 0 0 0 0 0 11 0 1195.5945 A8KA74;P78316;E9PFK5 A8KA74 674 684 NOP14 Nucleolar protein 14 yes no 2;3 9.6545E-31 177.06 4 1.0434 1.0457 1.0335 3 Median 1.0434 1.0457 1.0335 3 0 Median NaN NaN NaN 0 0 Median 42857000 21234000 21624000 42857000 21234000 21624000 0 0 0 985 790 1015 2683;2684;2685;2686 4207;4208;4209;4210;4211;4212 4211 6 APTTAAAAAAGVSSTK ASSSPAAGIPQEPQRAPTTAAAAAAGVSST PTTAAAAAAGVSSTKSKKGAKSHQGEKNAS R A P T K S 7 0 0 0 0 0 0 1 0 0 0 1 0 0 1 2 3 0 0 1 0 0 16 0 1373.7151 Q53G50;B2R8F3;O15479 Q53G50 65 80 MAGEB2 Melanoma-associated antigen B2 yes no 2 2.3012E-47 166.62 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4855600 0 4855600 4855600 0 4855600 0 0 0 986 861 1016 2687 4213 4213 1 APVIDIGIANTGK YTFTATPEDFPKKHKAPVIDIGIANTGKFI HKAPVIDIGIANTGKFIMTASSDTTVLIWS K A P G K F 2 0 1 1 0 0 0 2 0 3 0 1 0 0 1 0 1 0 0 1 0 0 13 0 1267.7136 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;B4DY59;A0A0S2Z5C1 E9PF19 153 165 TBL2 Transducin beta-like protein 2 yes no 2 0.00012317 90.653 1 2 0.82542 0.74782 14.499 2 Median 0.82063 0.82855 NaN 1 0 Median 0.83024 0.67495 NaN 1 0 Median 33825000 14575000 19250000 27370000 12388000 14982000 6455000 2187600 4267500 987 582 1017 2688;2689;2690 4214;4215;4216;4217;4218;4219 4214 6 APVLSIDPPVHEVEQGIDAK QPWYKAAVAWANQNRAPVLSIDPPVHEVEQ IDPPVHEVEQGIDAKWSLALGLPLPLGEHA R A P A K W 2 0 0 2 0 1 2 1 1 2 1 1 0 0 3 1 0 0 0 3 0 0 20 0 2113.1055 Q96F86 Q96F86 437 456 EDC3 Enhancer of mRNA-decapping protein 3 yes yes 3 1.4285E-05 38.915 1 2.1146 2.1109 NaN 1 Median 2.1146 2.1109 NaN 1 0 Median NaN NaN NaN 0 0 Median 14545000 4827000 9718300 14545000 4827000 9718300 0 0 0 988 1964 1018 2691 4220 4220 1 APVNTAELTDLLIQQNHIGSVIK DYDGIKKLLQQLFLKAPVNTAELTDLLIQQ TDLLIQQNHIGSVIKQTDVSEDSNDDMDED K A P I K Q 2 0 2 1 0 2 1 1 1 3 3 1 0 0 1 1 2 0 0 2 0 0 23 0 2473.354 Q9P287;B4E318;B4DUS0 Q9P287 85 107 BCCIP BRCA2 and CDKN1A-interacting protein yes no 3 1.7687E-49 162.81 2 2 2.3686 2.2342 20.014 4 Median 2.4116 2.6561 1.1374 2 0 Median 2.3413 1.8787 1.18 2 0 Median 131520000 34562000 96956000 95443000 24090000 71353000 36075000 10472000 25603000 989 2094 1019 2692;2693;2694;2695 4221;4222;4223;4224;4225;4226 4221 6 APVPASELLASGVLSR VETLRQERLSFSGLRAPVPASELLASGVLS PVPASELLASGVLSRAQFEQLKDGKTTVKD R A P S R A 3 1 0 0 0 0 1 1 0 0 3 0 0 0 2 3 0 0 0 2 0 0 16 0 1565.8777 Q15149;D3DWL0 Q15149 3447 3462 PLEC;PLEC1 Plectin yes no 2 1.9809E-44 164.48 2 2 2.1018 2.1251 4.3802 4 Median 1.8511 2.1251 0.6928 2 0 Median 2.5399 2.114 7.5367 2 0 Median 279160000 99632000 179530000 243530000 88963000 154560000 35634000 10669000 24965000 990 1754 1020 2696;2697;2698;2699 4227;4228;4229;4230;4231 4228 5 APVPGTPDSLSSGSSR SMVAQAMGVYGALTKAPVPGTPDSLSSGSS PVPGTPDSLSSGSSRDVQGTDASLDEELDR K A P S R D 1 1 0 1 0 0 0 2 0 0 1 0 0 0 3 5 1 0 0 1 0 0 16 0 1513.7372 Q9UJZ1;A0A087WYB4 Q9UJZ1 322 337 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 6.1992E-07 98.156 2 1 1.368 1.4052 7.9224 3 Median 1.2395 1.3136 9.5304 2 0 Median 1.619 1.4119 NaN 1 0 Median 55466000 26591000 28874000 54519000 26203000 28316000 946550 388220 558330 991 2104 1021 2700;2701;2702 4232;4233;4234;4235 4232 4 APVPTGEVYFADSFDR PDTTAPPSSPKVTYKAPVPTGEVYFADSFD PVPTGEVYFADSFDRGTLSGWILSKAKKDD K A P D R G 2 1 0 2 0 0 1 1 0 0 0 0 0 2 2 1 1 0 1 2 0 0 16 0 1769.8261 P27824;H0Y9Q7;Q16094;D6RB85;D6RDP7;D6RAQ8;D6RAU8;D6RHJ3;D6RD16 P27824 62 77 CANX Calnexin yes no 2 1.8665E-06 94.191 2 1 0.83349 0.88355 5.9584 2 Median 0.83349 0.88355 5.9584 2 0 Median NaN NaN NaN 0 0 Median 69603000 36508000 33095000 65997000 36508000 29490000 3605700 0 3605700 992 1526 1022 2703;2704;2705 4236;4237;4238;4239;4240;4241;4242 4238 7 APVQPQQSPAAAPGGTDEK ______________________________ PQQSPAAAPGGTDEKPSGKERRDAGDKDKE K A P E K P 4 0 0 1 0 3 1 2 0 0 0 1 0 0 4 1 1 0 0 1 0 0 19 0 1847.9014 Q59EG8;Q13200;B4DM22;Q9NSM5;C9JPC0;F8WBS8 Q59EG8 14 32 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 1.5453E-13 103.83 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8707000 0 8707000 8707000 0 8707000 0 0 0 993 1707 1023 2706;2707 4243;4244;4245 4245 3 APVQPQQSPAAAPGGTDEKPSGK ______________________________ PAAAPGGTDEKPSGKERRDAGDKDKEQELS K A P G K E 4 0 0 1 0 3 1 3 0 0 0 2 0 0 5 2 1 0 0 1 0 0 23 1 2217.1026 Q59EG8;Q13200;B4DM22;Q9NSM5;C9JPC0;F8WBS8 Q59EG8 14 36 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.00085859 32.025 2 2.6699 2.3266 1.915 2 Median NaN NaN NaN 0 0 Median 2.6699 2.3266 1.915 2 0 Median 5622700 1386400 4236300 0 0 0 5622700 1386400 4236300 994 1707 1024 2708;2709 4246;4247 4247 2 APWCYTTNSEVR KNLEENYCRNPNGEKAPWCYTTNSEVRWEY GEKAPWCYTTNSEVRWEYCTIPSCESSPLS K A P V R W 1 1 1 0 1 0 1 0 0 0 0 0 0 0 1 1 2 1 1 1 0 0 12 0 1482.6562 CON__P06868 CON__P06868 339 350 yes yes 2 0.0014978 77.379 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26684000 26684000 0 26684000 26684000 0 0 0 0 + 995 1157 1025 2710;2711 4248;4249 4249 2 APWELLELR TILFADLHAYLDNMKAPWELLELRVSYYEN YLDNMKAPWELLELRVSYYENVIKAMLESI K A P L R V 1 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 0 1 0 0 0 0 9 0 1125.6182 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 85 93 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.0018407 80.165 2 1 2.7492 2.8079 27.958 3 Plateau 2.7313 2.7817 15.296 2 0 Median 2.0131 1.7798 NaN 1 0 Median 26141000 7139100 19002000 25006000 6787200 18219000 1134700 351890 782790 996 567 1026 2712;2713;2714 4250;4251;4252;4253;4254 4250 5 AQAAAPASVPAQAPK LCRPKAKAKAKDQTKAQAAAPASVPAQAPK AQAAAPASVPAQAPKRTQAPTKASE_____ K A Q P K R 7 0 0 0 0 2 0 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 15 0 1376.7412 A0A024R326;Q6IPI1;P47914 A0A024R326 133 147 RPL29 60S ribosomal protein L29 yes no 2 1.6912E-07 109.24 2 2 0.66452 0.6728 34.028 4 Median 0.75358 0.90127 2.6813 2 0 Median 0.57354 0.50063 3.1356 2 0 Median 4286100000 2458500000 1827600000 3793100000 2143300000 1649800000 493070000 315260000 177810000 997 127 1027 2715;2716;2717;2718 4255;4256;4257;4258;4259;4260;4261;4262;4263;4264;4265;4266 4256 12 AQAALAVNISAAR ______________________________ ARAQAALAVNISAARGLQDVLRTNLGPKGT R A Q A R G 6 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1254.7044 Q59ET3;B2R9K8;A0A024RDL1;P40227 Q59ET3 14 26 CCT6A T-complex protein 1 subunit zeta yes no 2 1.8589E-13 130.01 1 1 1.4822 1.5116 NaN 1 Median 1.4822 1.5116 NaN 1 0 Median NaN NaN NaN 0 0 Median 19850000 7495000 12355000 18696000 7495000 11201000 1153800 0 1153800 998 389 1028 2719;2720 4267;4268;4269 4268 3 AQAEAQQPTFDALRDELR LPELEATKASLKKLRAQAEAQQPTFDALRD EAQQPTFDALRDELRGAQEVGERLQQRHGE R A Q L R G 4 2 0 2 0 3 2 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 18 1 2058.013 Q15149 Q15149 1274 1291 PLEC Plectin yes yes 3 2.9205E-08 93.495 2 2 1.528 1.7531 30.217 3 Median 1.4221 1.5877 14.012 2 0 Median 3.0128 2.6033 NaN 1 0 Median 99789000 34482000 65307000 90296000 33175000 57121000 9492400 1307000 8185400 999 1754 1029 2721;2722;2723;2724 4270;4271;4272;4273;4274;4275;4276 4272 7 AQAELVGTADEATR LDMLDLGAAKANLEKAQAELVGTADEATRA KAQAELVGTADEATRAEIQIRIEANEALVK K A Q T R A 4 1 0 1 0 1 2 1 0 0 1 0 0 0 0 0 2 0 0 1 0 0 14 0 1430.7001 P30049 P30049 137 150 ATP5D ATP synthase subunit delta, mitochondrial yes yes 2 2.3654E-07 105.17 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7380100 0 7380100 7380100 0 7380100 0 0 0 1000 1531 1030 2725 4277 4277 1 AQAEVEGLGK EPARECAQRIAEQQKAQAEVEGLGKGVARL AEQQKAQAEVEGLGKGVARLSAEAEKVLAL K A Q G K G 2 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1000.5189 Q15149 Q15149 1166 1175 PLEC Plectin yes yes 2 0.00035656 88.948 2 1.4272 1.4904 NaN 1 Median 1.4272 1.4904 NaN 1 0 Median NaN NaN NaN 0 0 Median 37640000 18532000 19107000 37640000 18532000 19107000 0 0 0 1001 1754 1031 2726;2727 4278;4279 4278 2 AQALEDLAGFK TLPGSKRQLQTPKEKAQALEDLAGFKELFQ PKEKAQALEDLAGFKELFQTPGHTEELVAA K A Q F K E 3 0 0 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 11 0 1161.603 P46013 P46013 1218 1228 MKI67 Antigen KI-67 yes no 2 7.3374E-08 113.71 2 2 1.7759 2.126 5.7204 2 Median 1.7759 2.126 5.7204 2 0 Median NaN NaN NaN 0 0 Median 3488500000 1302300000 2186200000 3408300000 1223100000 2185200000 80164000 79225000 938920 1002 1569 1032 2728;2729;2730;2731 4280;4281;4282;4283;4284;4285 4283 6 AQALEELTGFR NLPGSNRRLQTRKEKAQALEELTGFRELFQ RKEKAQALEELTGFRELFQTPCTDNPTTDE K A Q F R E 2 1 0 0 0 1 2 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1233.6354 P46013 P46013 1826 1836 MKI67 Antigen KI-67 yes yes 2 1.2181E-11 120.45 2 2 3.2345 2.8226 40.682 3 Median 1.2219 1.409 NaN 1 0 Median 3.2852 2.8499 1.3628 2 0 Median 479920000 134280000 345640000 338320000 102050000 236270000 141600000 32231000 109370000 1003 1569 1033 2732;2733;2734;2735 4286;4287;4288;4289;4290;4291;4292;4293;4294;4295;4296;4297;4298 4286 13 AQATAQDPVFQK STMFSSAASESLARRAQATAQDPVFQKLKG ARRAQATAQDPVFQKLKGQFTTDFDFSVPG R A Q Q K L 3 0 0 1 0 3 0 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 12 0 1302.6568 F2Z2U4;Q59FH1;H0Y4W2;Q9Y4A5 F2Z2U4 3393 3404 TRRAP Transformation/transcription domain-associated protein yes no 2 0.017148 67.113 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1004 1253 1034 2736 4299 4299 1 AQAVSEEEEEEEGK KNPSSLFSKEAPKRKAQAVSEEEEEEEGKS KAQAVSEEEEEEEGKSSSPKKKIKLKKSKN K A Q G K S 2 0 0 0 0 1 7 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 14 0 1562.6584 B4DKV2;G3V529;Q9GZR7;Q59FS7;B4DGI6;Q9P054 B4DKV2 78 91 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 1.3189E-21 148.28 2 1 1.0916 0.98339 2.2693 2 Median 0.92774 0.96774 NaN 1 0 Median 1.2844 0.9993 NaN 1 0 Median 16854000 7665500 9188000 13478000 6371300 7107200 3375000 1294200 2080800 1005 993 1035 2737;2738;2739 4300;4301;4302;4303;4304 4301 5 AQCPIVER LPHSAGRYAAKRFRKAQCPIVERLTNSMMM AAKRFRKAQCPIVERLTNSMMMHGRNNGKK K A Q E R L 1 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 8 0 971.48585 M0R0F0;Q53G25;A0A024R4Q8;P46782;M0R0R2;Q59EK8 M0R0F0 64 71 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.0012974 110.31 2 2 1.098 1.2983 31.884 4 Linear 1.0617 1.2212 6.3636 2 0 Median 0.87582 0.7103 8.5426 2 0 Median 401060000 190350000 210720000 374580000 176880000 197700000 26482000 13465000 13017000 1006 160 1036 2740;2741;2742;2743 4305;4306;4307;4308;4309;4310;4311;4312 4305 8 AQDEAFALQDVPLSSVVR GLVTLKHVYEIARIKAQDEAFALQDVPLSS EAFALQDVPLSSVVRSIIGSARSLGIRVVK K A Q V R S 3 1 0 2 0 2 1 0 0 0 2 0 0 1 1 2 0 0 0 3 0 0 18 0 1943.9953 Q53G19;Q9Y3B7;H0YCD5 Q53G19 125 142 MRPL11 39S ribosomal protein L11, mitochondrial yes no 2 5.0302E-17 109.84 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20247000 0 20247000 20247000 0 20247000 0 0 0 1007 1785 1037 2744;2745 4313;4314 4314 2 AQDEGLLSDVVPFK EQDEYALRSHSLAKKAQDEGLLSDVVPFKV KAQDEGLLSDVVPFKVPGKDTVTKDNGIRP K A Q F K V 1 0 0 2 0 1 1 1 0 0 2 1 0 1 1 1 0 0 0 2 0 0 14 0 1516.7773 P55084;B4DY96;F5GZQ3;D6W539;B4DDC9 P55084 255 268 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 3.6786E-14 126.1 2 2 1.0369 1.2296 23.003 4 Linear 1.0949 1.1654 5.0199 2 0 Median 0.97324 0.78576 2.8948 2 0 Median 87982000 44014000 43968000 73292000 36813000 36480000 14689000 7201200 7488300 1008 1615 1038 2746;2747;2748;2749 4315;4316;4317;4318;4319;4320;4321;4322;4323;4324;4325;4326 4316 12 AQDIETLK TKRRTAWREEEREKKAQDIETLKKFLLNKK EEEREKKAQDIETLKKFLLNKKPHVVTVAG K A Q L K K 1 0 0 1 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 916.48656 Q7KZ85 Q7KZ85 830 837 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.015121 61.962 2 1.913 1.9102 9.1086 2 Median 1.913 1.9102 9.1086 2 0 Median NaN NaN NaN 0 0 Median 22343000 8340700 14002000 22343000 8340700 14002000 0 0 0 1009 1870 1039 2750;2751 4327;4328 4328 2 AQDSSLHMPER DLDSLVDFSTNNQKKAQDSSLHMPERAVFR NQKKAQDSSLHMPERAVFRLRKWIIFRLVS K A Q E R A 1 1 0 1 0 1 1 0 1 0 1 0 1 0 1 2 0 0 0 0 0 0 11 0 1269.5772 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 433 443 MYBBP1A Myb-binding protein 1A yes no 2 0.00023476 74.841 1 1.1502 1.1926 NaN 1 Median 1.1502 1.1926 NaN 1 0 Median NaN NaN NaN 0 0 Median 13693000 6389300 7303700 13693000 6389300 7303700 0 0 0 1010 1997 1040 2752 4329;4330 4330 1832 2 AQDTQPSDATSAPGAEGLEPPAAR PVRATGARAKKAPQRAQDTQPSDATSAPGA TSAPGAEGLEPPAAREPALSRAGSCRQRGA R A Q A R E 6 1 0 2 0 2 2 2 0 0 1 0 0 0 4 2 2 0 0 0 0 0 24 0 2336.088 Q8N884 Q8N884 88 111 MB21D1 Cyclic GMP-AMP synthase yes yes 2 2.2728E-20 103.13 2 2 1.4895 1.4652 5.6703 4 Median 1.3452 1.5368 3.5805 2 0 Median 1.6228 1.4075 2.5234 2 0 Median 399900000 165690000 234210000 266100000 114340000 151760000 133800000 51346000 82454000 1011 1914 1041 2753;2754;2755;2756 4331;4332;4333;4334;4335;4336;4337;4338;4339;4340 4332 10 AQDVLVQEMEVVK EHNPYEKFSKEELKKAQDVLVQEMEVVKQG KKAQDVLVQEMEVVKQGMSHGELSSEAYNQ K A Q V K Q 1 0 0 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 0 4 0 0 13 0 1486.7701 B4DSH1;B3KY60;Q99459 B4DSH1 605 617 CDC5L Cell division cycle 5-like protein yes no 2 0.0010962 54.471 2 1.4019 1.4174 NaN 1 Median 1.4019 1.4174 NaN 1 0 Median NaN NaN NaN 0 0 Median 5641800 1846800 3795000 5641800 1846800 3795000 0 0 0 1012 957 1042 2757;2758 4341;4342;4343 4342 773 3 AQEEADYIEWLK GSSLLQKRAKTRQEKAQEEADYIEWLKGQK QEKAQEEADYIEWLKGQKEIRNPDSLKELT K A Q L K G 2 0 0 1 0 1 3 0 0 1 1 1 0 0 0 0 0 1 1 0 0 0 12 0 1493.7038 Q8N9T8;A0A024R7C4;B4DUT2;B4DUY9;H0YFD2;B7ZLF4;F8WFC1 Q8N9T8 196 207 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.0018377 73.499 2 1 0.61408 0.5477 70.009 2 Median 0.32872 0.33385 NaN 1 0 Median 1.1471 0.89853 NaN 1 0 Median 15056000 11567000 3489200 11709000 9719700 1989700 3346800 1847300 1499500 1013 1916 1043 2759;2760;2761 4344;4345;4346 4345 3 AQEEYEQIQAK FTIPKKNKKKTSNQKAQEEYEQIQAKRAAK SNQKAQEEYEQIQAKRAAKKQEFERRKQER K A Q A K R 2 0 0 0 0 3 3 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 11 0 1335.6307 Q9P031 Q9P031 172 182 CCDC59 Thyroid transcription factor 1-associated protein 26 yes yes 2 0.010239 48.981 2 1.0838 0.86255 7.7387 2 Median NaN NaN NaN 0 0 Median 1.0838 0.86255 7.7387 2 0 Median 6917000 3040300 3876700 0 0 0 6917000 3040300 3876700 1014 2090 1044 2762;2763 4347;4348;4349 4349 3 AQEFLQHR YSSILVVGGGLMFHKAQEFLQHRILNKMPP GGLMFHKAQEFLQHRILNKMPPSFRRIIEN K A Q H R I 1 1 0 0 0 2 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1027.5199 Q9H981;H0Y849 Q9H981 547 554 ACTR8 Actin-related protein 8 yes no 2 0.0083247 79.116 1 0.83605 0.84364 NaN 1 Median 0.83605 0.84364 NaN 1 0 Median NaN NaN NaN 0 0 Median 9530400 5761300 3769100 9530400 5761300 3769100 0 0 0 1015 2044 1045 2764 4350 4350 1 AQEGGGSEVFQELK LEAARMLCVNAPPKKAQEGGGSEVFQELKG KAQEGGGSEVFQELKGICIALGMSKPPANI K A Q L K G 1 0 0 0 0 2 3 3 0 0 1 1 0 1 0 1 0 0 0 1 0 0 14 0 1477.7049 I6L9E8;Q8NCA5;E9PH82;Q05CT2;B3KTW4 I6L9E8 134 147 FAM98A Protein FAM98A yes no 2 3.9792E-06 100.93 1 2 1.3838 1.5367 23.313 3 Plateau 1.3838 1.5375 NaN 1 0 Median 1.2712 1.0268 0.75067 2 0 Median 75464000 33675000 41789000 59997000 26731000 33266000 15466000 6943900 8522600 1016 1324 1046 2765;2766;2767 4351;4352;4353;4354;4355;4356 4352 6 AQEGPDAEIIGGER KVALELPASKFLWLKAQEGPDAEIIGGERS KAQEGPDAEIIGGERSVFYLLMKMFVTSSH K A Q E R S 2 1 0 1 0 1 3 3 0 2 0 0 0 0 1 0 0 0 0 0 0 0 14 0 1440.6845 O60287 O60287 622 635 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 8.1988E-10 122.33 2 1.2731 1.3449 0.23062 2 Median 1.2731 1.3449 0.23062 2 0 Median NaN NaN NaN 0 0 Median 63488000 27120000 36368000 63488000 27120000 36368000 0 0 0 1017 1392 1047 2768;2769 4357;4358;4359;4360 4358 4 AQEIDGQALLLLK IRSLPGCQEIAEEFRAQEIDGQALLLLKED FRAQEIDGQALLLLKEDHLMSAMNIKLGPA R A Q L K E 2 0 0 1 0 2 1 1 0 1 4 1 0 0 0 0 0 0 0 0 0 0 13 0 1410.8082 B3KPJ4;B4DG61;B7ZLY0;A0A0A0MSI2;Q8IXK0;P78365;H7C528;A5YM43;Q8NDX5 B3KPJ4 424 436 PHC2;HPH2;PHC3 Polyhomeotic-like protein 2;Polyhomeotic-like protein 3 no no 2 5.1868E-19 146.11 2 2 1.4988 1.3744 8.2215 4 Median 1.2472 1.3383 0.31492 2 0 Median 1.8862 1.4979 8.706 2 0 Median 89483000 32274000 57209000 55565000 21319000 34246000 33918000 10955000 22962000 1018 479;677 1048 2770;2771;2772;2773 4361;4362;4363;4364;4365;4366;4367;4368 4365 8 AQELGHSQSALASAQR RDSALETLQGQLEEKAQELGHSQSALASAQ QELGHSQSALASAQRELAAFRTKVQDHSKA K A Q Q R E 4 1 0 0 0 3 1 1 1 0 2 0 0 0 0 3 0 0 0 0 0 0 16 0 1652.823 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1175 1190 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 6.1743E-45 157.35 4 3 1.0014 1.1407 20.61 7 Median 0.95662 1.0815 18.297 4 0 Linear 1.48 1.2696 6.3879 3 0 Median 177730000 93853000 83881000 144400000 80738000 63667000 33329000 13115000 20215000 1019 186;1747 1049 2774;2775;2776;2777;2778;2779;2780 4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381 4375 13 AQELIQATNQILSHR LLFKMEEANLASRAKAQELIQATNQILSHR AQELIQATNQILSHRKPPSSLGMTPAPVPT K A Q H R K 2 1 1 0 0 3 1 0 1 2 2 0 0 0 0 1 1 0 0 0 0 0 15 0 1720.922 A0A024QZH6;Q9H7N4 A0A024QZH6 1124 1138 SR-A1;SCAF1 Splicing factor, arginine/serine-rich 19 yes no 3 0.0008158 44.312 1 1.1171 1.1023 NaN 1 Median 1.1171 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median 12872000 4457600 8414100 12872000 4457600 8414100 0 0 0 1020 22 1050 2781 4382 4382 1 AQEPESGLSEETQVK DYVAVARGSKDHNIRAQEPESGLSEETQVK AQEPESGLSEETQVKCLMDQATDPNILGRT R A Q V K C 1 0 0 0 0 2 4 1 0 0 1 1 0 0 1 2 1 0 0 1 0 0 15 0 1630.7686 P78527 P78527 4091 4105 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.088E-30 158.34 2 2 0.53385 0.50744 55.297 4 Median 0.73109 0.81955 3.6112 2 0 Median 0.39357 0.31489 3.2969 2 0 Median 195830000 117060000 78775000 160450000 92279000 68173000 35380000 24778000 10603000 1021 1665 1051 2782;2783;2784;2785 4383;4384;4385;4386;4387;4388;4389 4387 7 AQETGHLVMDVR FSYNDSKEWEEAMAKAQETGHLVMDVRRYG MAKAQETGHLVMDVRRYGKAGSPETKWIDA K A Q V R R 1 1 0 1 0 1 1 1 1 0 1 0 1 0 0 0 1 0 0 2 0 0 12 0 1354.6663 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424;H0YDQ3;H0YE95;H0YDG6 A0A1P7ZIM8 725 736 LMO7 LIM domain only protein 7 yes no 2 0.01366 45.911 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1022 640 1052 2786 4390 4390 496 1 AQEVAELK EEEEEQLNQTLAEMKAQEVAELKRKKKKLL QTLAEMKAQEVAELKRKKKKLLREQRKQRE K A Q L K R 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 886.476 Q8IY81;B4DKU3 Q8IY81 377 384 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.026101 54.776 1 1 1.1307 1.0332 4.7492 2 Median 0.99358 1.0685 NaN 1 0 Median 1.2867 0.99905 NaN 1 0 Median 43578000 20374000 23204000 40130000 18847000 21283000 3448400 1527300 1921200 1023 1898 1053 2787;2788 4391;4392 4391 2 AQEYDSSFPNWEFAR REEKKAQNSEMRMKRAQEYDSSFPNWEFAR AQEYDSSFPNWEFARMIKEFRATLECHPLT R A Q A R M 2 1 1 1 0 1 2 0 0 0 0 0 0 2 1 2 0 1 1 0 0 0 15 0 1845.7958 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q5JR91;Q5JR89 A8K3S3 220 234 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 4.3722E-07 103.75 2 2 0.88129 0.82917 8.6878 4 Median 0.75594 0.7967 1.5746 2 0 Median 1.0474 0.90362 8.0865 2 0 Median 61964000 35025000 26939000 53101000 30995000 22106000 8863700 4030300 4833400 1024 626 1054 2789;2790;2791;2792 4393;4394;4395;4396;4397;4398 4395 6 AQFAQPEILIGTIPGAGGTQR CELAMMCDIIYAGEKAQFAQPEILIGTIPG EILIGTIPGAGGTQRLTRAVGKSLAMEMVL K A Q Q R L 3 1 0 0 0 3 1 4 0 3 1 0 0 1 2 0 2 0 0 0 0 0 21 0 2124.1328 P30084 P30084 158 178 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2 7.8093E-06 56.482 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9585300 0 9585300 9585300 0 9585300 0 0 0 1025 1533 1055 2793;2794 4399;4400 4399 2 AQFEGIVTDLIR MDSSGPKHLNMKLTRAQFEGIVTDLIRRTI LTRAQFEGIVTDLIRRTIAPCQKAMQDAEV R A Q I R R 1 1 0 1 0 1 1 1 0 2 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1360.7351 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;A1XP52;H0YBG6 B7Z4V2 335 346 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.174E-05 107.24 2 2 1.6246 1.5824 47.875 4 Median 2.0886 2.3751 1.5165 2 0 Median 1.2161 1.0375 3.7838 2 0 Median 285490000 99232000 186260000 233040000 74888000 158150000 52455000 24345000 28111000 1026 1092 1056 2795;2796;2797;2798 4401;4402;4403;4404;4405;4406;4407;4408 4402 8 AQFEQLK PVPASELLASGVLSRAQFEQLKDGKTTVKD LASGVLSRAQFEQLKDGKTTVKDLSELGSV R A Q L K D 1 0 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 862.45487 Q15149;D3DWL0 Q15149 3463 3469 PLEC;PLEC1 Plectin yes no 2 0.014426 100.07 1 1.859 2.083 NaN 1 Median 1.859 2.083 NaN 1 0 Median NaN NaN NaN 0 0 Median 80769000 28985000 51784000 80769000 28985000 51784000 0 0 0 1027 1754 1057 2799 4409 4409 1 AQFLVEK AAVEAKQVAQQEAQRAQFLVEKAKQEQRQK VAQQEAQRAQFLVEKAKQEQRQKIVQAEGE R A Q E K A 1 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 833.4647 J3KPX7;Q99623;F5GY37;F5GWA7 J3KPX7 210 216 PHB2 Prohibitin-2 yes no 2 0.013473 102.71 1 1.5365 1.7843 NaN 1 Median 1.5365 1.7843 NaN 1 0 Median NaN NaN NaN 0 0 Median 226740000 95263000 131480000 226740000 95263000 131480000 0 0 0 1028 1328 1058 2800 4410 4410 1 AQHEDQVEQYK REFESRLADALQELRAQHEDQVEQYKKELE QELRAQHEDQVEQYKKELEKTYSAKLDNAR R A Q Y K K 1 0 0 1 0 3 2 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 11 0 1373.6212 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 250 260 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 1.399E-65 238.86 4 2 1.2384 1.3879 14.613 6 Plateau 1.2257 1.4008 4.5475 4 0 Linear 1.2837 1.0191 4.2692 2 0 Median 361670000 157110000 204560000 348710000 151800000 196910000 12959000 5311000 7648400 1029 1440 1059 2801;2802;2803;2804;2805;2806 4411;4412;4413;4414;4415;4416;4417;4418 4411 8 AQHQLGEFK MRCGDLLAASQVVNRAQHQLGEFKTWFQEY SQVVNRAQHQLGEFKTWFQEYMNSKDRRLS R A Q F K T 1 0 0 0 0 2 1 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1056.5352 Q8N1F7;A8K897;H3BVG0;H3BPA9 Q8N1F7 341 349 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0023407 85.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1030 1904 1060 2807 4419 4419 1 AQHQQALSSLELLNVLFR KVTENLRVLGEAQTKAQHQQALSSLELLNV QQALSSLELLNVLFRTCKHEKLTLDLTVLL K A Q F R T 2 1 1 0 0 3 1 0 1 0 5 0 0 1 0 2 0 0 0 1 0 0 18 0 2066.1273 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1077 1094 MYBBP1A Myb-binding protein 1A yes no 3 2.4382E-40 160.43 2 0.8904 1.0166 1.9489 2 Median 0.8904 1.0166 1.9489 2 0 Median NaN NaN NaN 0 0 Median 287690000 153230000 134460000 287690000 153230000 134460000 0 0 0 1031 1997 1061 2808;2809 4420;4421;4422;4423;4424 4423 5 AQHSENDLEEVGK QSQLTAFFLEALDFRAQHSENDLEEVGKTE FRAQHSENDLEEVGKTENCIIDCLVAMVVK R A Q G K T 1 0 1 1 0 1 3 1 1 0 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1454.6638 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1879 1891 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2;3 1.6026E-74 218.06 3 3 1.0643 0.90963 10.071 5 Median 0.88836 0.99793 15.104 2 0 Median 1.1192 0.90963 4.3421 3 0 Median 223120000 99715000 123400000 209480000 93771000 115710000 13641000 5943800 7696900 1032 897 1062 2810;2811;2812;2813;2814;2815 4425;4426;4427;4428;4429;4430;4431;4432;4433 4426 9 AQIAGYLYGVSPPDNPQVK PKNVLKKFICISDLRAQIAGYLYGVSPPDN GYLYGVSPPDNPQVKEIRCIVMVPQWGTHQ R A Q V K E 2 0 1 1 0 2 0 2 0 1 1 1 0 0 3 1 0 0 2 2 0 0 19 0 2016.0316 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2122 2140 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 3.4807E-17 122.64 3 2 0.9328 0.90356 14.122 4 Median 0.90049 0.98579 1.1972 2 0 Median 0.98278 0.78486 8.7947 2 0 Median 112650000 57521000 55129000 90279000 47273000 43006000 22371000 10248000 12124000 1033 1854 1063 2816;2817;2818;2819;2820 4434;4435;4436;4437;4438;4439;4440;4441;4442;4443;4444 4439 11 AQIDPVLLK VRNRNELAETLALLKAQIDPVLLKNSSQQD TLALLKAQIDPVLLKNSSQQDNSSRESPSL K A Q L K N 1 0 0 1 0 1 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 9 0 995.60153 Q96T23;H0YER1;H0YCN2;Q05DG0;H7C306 Q96T23 207 215 RSF1 Remodeling and spacing factor 1 yes no 2 0.018672 51.854 1 0.45994 0.49502 NaN 1 Median 0.45994 0.49502 NaN 1 0 Median NaN NaN NaN 0 0 Median 33239000 20648000 12591000 33239000 20648000 12591000 0 0 0 1034 1991 1064 2821 4445;4446 4445 2 AQIFANTVDNAR VRDWSHYFKIIEDLRAQIFANTVDNARIVL DLRAQIFANTVDNARIVLQIDNARLAADDF R A Q A R I 3 1 2 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1318.663 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 138 149 KRT18 Keratin, type I cytoskeletal 18 yes no 2 3.6427E-23 187.5 2 2 1.3673 1.3816 4.6315 4 Median 1.1287 1.3263 1.9467 2 0 Median 1.653 1.4322 1.2502 2 0 Median 1217400000 559830000 657590000 1118300000 521410000 596850000 99164000 38419000 60745000 1035 316 1065 2822;2823;2824;2825 4447;4448;4449;4450;4451;4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462 4449 16 AQIHDLVLVGGSTR LEPVEKALRDAKLDKAQIHDLVLVGGSTRI KAQIHDLVLVGGSTRIPKVQKLLQDFFNGR K A Q T R I 1 1 0 1 0 1 0 2 1 1 2 0 0 0 0 1 1 0 0 2 0 0 14 0 1464.8049 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5 A8K5I0 329 342 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 0.00018591 80.522 5 4 0.94789 0.90108 6.8602 7 Median 0.7834 0.90108 5.048 3 0 Median 1.0448 0.87437 8.515 4 0 Median 432000000 234130000 197870000 379420000 208760000 170650000 52586000 25366000 27221000 1036 533 1066 2826;2827;2828;2829;2830;2831;2832;2833;2834 4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477 4476 15 AQILVAKPELK RGPRGRETHPVPQKKAQILVAKPELKDPIR PQKKAQILVAKPELKDPIRKKRGRKPLPPE K A Q L K D 2 0 0 0 0 1 1 0 0 1 2 2 0 0 1 0 0 0 0 1 0 0 11 1 1208.7493 Q14781 Q14781 147 157 CBX2 Chromobox protein homolog 2 yes yes 2;3 0.015112 59.426 2 0.74924 0.86715 13.184 2 Median 0.74924 0.86715 13.184 2 0 Median NaN NaN NaN 0 0 Median 21738000 11166000 10571000 21738000 11166000 10571000 0 0 0 1037 1744 1067 2835;2836 4478;4479 4478 2 AQINIR YNEEILDLLCPSREKAQINIREDPKEGIKI DLLCPSREKAQINIREDPKEGIKIVGLTEK K A Q I R E 1 1 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 6 0 713.41842 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 162 167 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.035918 118.18 2 0.74812 0.82582 12.36 2 Median 0.74812 0.82582 12.36 2 0 Median NaN NaN NaN 0 0 Median 107460000 63850000 43613000 107460000 63850000 43613000 0 0 0 1038 1803 1068 2837;2838 4480;4481 4480 2 AQIQQFHSQIAAQTSASVLAEELHK QMQVQDILEQNEALKAQIQQFHSQIAAQTS AAQTSASVLAEELHKVIAEKDKQIKQTEDS K A Q H K V 5 0 0 0 0 5 2 0 2 2 2 1 0 1 0 3 1 0 0 1 0 0 25 0 2734.4038 A0A024R663;Q86UP2 A0A024R663 583 607 KTN1 Kinectin yes no 4 0.0065282 24.2 1 0.52307 0.41839 NaN 1 Median NaN NaN NaN 0 0 Median 0.52307 0.41839 NaN 1 0 Median 8804900 6139100 2665700 0 0 0 8804900 6139100 2665700 1039 197 1069 2839 4482 4482 1 AQIWDTAGQER EFATRSIQVDGKTIKAQIWDTAGQERYRAI KTIKAQIWDTAGQERYRAITSAYYRGAVGA K A Q E R Y 2 1 0 1 0 2 1 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 11 0 1273.6051 H3BMH2;H3BSC1;A0A024R5Z8;B4DMN1;P62491;Q15907 H3BMH2 62 72 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B yes no 2 0.0026408 72.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2661600 2661600 0 2661600 2661600 0 0 0 0 1040 194 1070 2840 4483;4484 4484 2 AQLADSFHLQQFFR LSRRNALHERAMRRRAQLADSFHLQQFFRD RAQLADSFHLQQFFRDSDELKSWVNEKMKT R A Q F R D 2 1 0 1 0 3 0 0 1 0 2 0 0 3 0 1 0 0 0 0 0 0 14 0 1706.8529 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 567 580 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 1.7874E-05 76.262 2 2 1.6525 1.6404 4.5976 2 Median 1.6525 1.6404 4.5976 2 0 Median NaN NaN NaN 0 0 Median 34380000 10995000 23385000 29472000 10995000 18478000 4907700 0 4907700 1041 523 1071 2841;2842;2843;2844 4485;4486;4487;4488 4486 4 AQLDQTGQHLFCVCGTR YAVERKIEPFYKGGKAQLDQTGQHLFCVCG LDQTGQHLFCVCGTRVNILEVASGAVLRSL K A Q T R V 1 1 0 1 2 3 0 2 1 0 2 0 0 1 0 0 2 0 0 1 0 0 17 0 1989.9149 Q12788 Q12788 30 46 TBL3 Transducin beta-like protein 3 yes yes 3 1.927E-06 86.455 1 2 1.2773 1.055 17.079 3 Median 0.73612 0.80613 NaN 1 0 Median 1.2892 1.0805 3.3704 2 0 Median 49436000 23956000 25480000 32186000 16663000 15523000 17250000 7293300 9956700 1042 1698 1072 2845;2846;2847 4489;4490;4491;4492;4493 4491 5 AQLEEEAAAAEERPLVFLCSGCR WSSMSEDASVADMERAQLEEEAAAAEERPL AAEERPLVFLCSGCRRPLGDSLSWVASQED R A Q C R R 5 2 0 0 2 1 5 1 0 0 3 0 0 1 1 1 0 0 0 1 0 0 23 1 2605.2265 Q9NYP9 Q9NYP9 67 89 MIS18A Protein Mis18-alpha yes yes 3 2.3286E-06 48.229 2 0.6372 0.57405 21.556 2 Median NaN NaN NaN 0 0 Median 0.6372 0.57405 21.556 2 0 Median 6803300 4054600 2748700 0 0 0 6803300 4054600 2748700 1043 2084 1073 2848;2849 4494;4495;4496 4495 3 AQLENHEPEEEEEEEMETEEK RDMNEKELEAQEARKAQLENHEPEEEEEEE EPEEEEEEEMETEEKEAGGSDEEQEKGSSS K A Q E K E 1 0 1 0 0 1 12 0 1 0 1 1 1 0 1 0 1 0 0 0 0 0 21 0 2587.0392 A0A024R0H6;Q8N7H5;M0QYC7 A0A024R0H6 369 389 PAF1 RNA polymerase II-associated factor 1 homolog yes no 3 7.9523E-17 111.45 2 1.6877 1.7824 22.058 2 Median 1.6877 1.7824 22.058 2 0 Median NaN NaN NaN 0 0 Median 35414000 15009000 20405000 35414000 15009000 20405000 0 0 0 1044 46 1074 2850;2851 4497;4498;4499;4500;4501;4502 4500 25 6 AQLEPVASPAK INAIKDYELQLVTYKAQLEPVASPAKKPKV VTYKAQLEPVASPAKKPKVQSGSESVIQEY K A Q A K K 3 0 0 0 0 1 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 11 0 1109.6081 Q15149 Q15149 1428 1438 PLEC Plectin yes yes 2 0.0063655 54.539 1 1.6748 1.7284 NaN 1 Median 1.6748 1.7284 NaN 1 0 Median NaN NaN NaN 0 0 Median 32760000 13365000 19395000 32760000 13365000 19395000 0 0 0 1045 1754 1075 2852 4503 4503 1 AQLGGPEAAK TQSNEITIPVTFESRAQLGGPEAAKSDETA TFESRAQLGGPEAAKSDETAAK________ R A Q A K S 3 0 0 0 0 1 1 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 10 0 940.49779 V9HW43;P04792;B4DL87;C9J3N8 V9HW43 189 198 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 0.044966 48.091 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13208000 13208000 0 13208000 13208000 0 0 0 0 1046 1443 1076 2853 4504 4504 1 AQLGLGHSYSR FHNLVKGLTDLSACKAQLGLGHSYSRAKVK SACKAQLGLGHSYSRAKVKFNVNRVDNMII K A Q S R A 1 1 0 0 0 1 0 2 1 0 2 0 0 0 0 2 0 0 1 0 0 0 11 0 1187.6047 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 144 154 NOP56 Nucleolar protein 56 yes no 2;3 8.1355E-23 188.28 4 4 0.82855 0.82746 5.2489 8 Median 0.73135 0.84989 5.2799 4 0 Median 0.94915 0.81832 4.4712 4 0 Median 1569700000 888970000 680730000 1297800000 747020000 550780000 271900000 141950000 129950000 1047 785 1077 2854;2855;2856;2857;2858;2859;2860;2861 4505;4506;4507;4508;4509;4510;4511;4512;4513;4514;4515;4516;4517;4518;4519;4520 4510 16 AQLIVGWR SARDLRSLQRIGPKKAQLIVGWRELHGPFS QRIGPKKAQLIVGWRELHGPFSQVEDLERV K A Q W R E 1 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 1 0 0 8 0 941.54469 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 615 622 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.021849 57.559 1 2 1.2654 1.0886 1.4158 3 Median 1.0592 1.0835 NaN 1 0 Median 1.2978 1.1005 1.5464 2 0 Median 39809000 19309000 20500000 33501000 16664000 16837000 6308300 2645000 3663300 1048 1745 1078 2862;2863;2864 4521;4522;4523;4524;4525;4526 4522 6 AQLLQGLDEAK EQNLSSQVECLELEKAQLLQGLDEAKNNYI ELEKAQLLQGLDEAKNNYIVLQSSVNGLIQ K A Q A K N 2 0 0 1 0 2 1 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1184.6401 P49454 P49454 2579 2589 CENPF Centromere protein F yes yes 2 7.9385E-10 125.48 2 0.93352 0.99662 2.8767 2 Median 0.93352 0.99662 2.8767 2 0 Median NaN NaN NaN 0 0 Median 68969000 33273000 35697000 68969000 33273000 35697000 0 0 0 1049 1581 1079 2865;2866 4527;4528;4529 4529 3 AQLLQPTLEINPR HFLRMQQLAKTQEERAQLLQPTLEINPRHA ERAQLLQPTLEINPRHALIKKLNQLRASEP R A Q P R H 1 1 1 0 0 2 1 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 13 0 1491.8409 Q5CAQ4;I3L0K7;K0A7K7;Q9BV61;Q59EK6;Q53G55;Q53FS6;A0A140VJY2;Q12931 Q5CAQ4 426 438 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 2 0.00015701 86.189 2 2.5318 2.5104 NaN 1 Median 2.5318 2.5104 NaN 1 0 Median NaN NaN NaN 0 0 Median 19040000 4051000 14989000 19040000 4051000 14989000 0 0 0 1050 612 1080 2867;2868 4530;4531 4531 2 AQLMADFQAGR LWEVMQSDLIPEEQRAQLMADFQAGRVTKE EEQRAQLMADFQAGRVTKERMIIIIIEIIE R A Q G R V 3 1 0 1 0 2 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 11 0 1206.5815 Q15149;D3DWL0;Q96IE3 Q15149 3739 3749 PLEC;PLEC1 Plectin yes no 2 0.0042269 61.353 3 1.944 2.0286 10.711 2 Median 1.944 2.0286 10.711 2 0 Median NaN NaN NaN 0 0 Median 84088000 20660000 63427000 84088000 20660000 63427000 0 0 0 1051 1754 1081 2869;2870;2871 4532;4533;4534 4534 1607 2 AQLNIGNVLPVGTMPEGTIVCCLEEKPGDR AEGIHTGQFVYCGKKAQLNIGNVLPVGTMP EGTIVCCLEEKPGDRGKLARASGNYATVIS K A Q D R G 1 1 2 1 2 1 3 4 0 2 3 1 1 0 3 0 2 0 0 3 0 0 30 1 3266.6098 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 94 123 RPL8 60S ribosomal protein L8 yes no 3 1.9924E-23 95.255 3 1.22 1.0829 55.975 3 Plateau NaN NaN NaN 0 0 Median 1.22 1.0829 55.975 3 0 Plateau 149280000 74531000 74749000 0 0 0 149280000 74531000 74749000 1052 1653 1082;1083 2872;2873;2874 4535;4536;4537;4538 4535 1431 4 AQLPVMVIVTPQDR VEEQVEIRSGFLAARAQLPVMVIVTPQDRK RAQLPVMVIVTPQDRKNSVWTQDGPSAQIL R A Q D R K 1 1 0 1 0 2 0 0 0 1 1 0 1 0 2 0 1 0 0 3 0 0 14 0 1565.8599 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 942 955 NOL6 Nucleolar protein 6 yes no 2 3.8984E-05 88.441 2 5 1.5741 1.3161 36.929 7 Median 1.7529 1.9846 0.04402 2 0 Median 1.4692 1.195 26.246 5 0 Median 166500000 57702000 108800000 124510000 38514000 85996000 41989000 19189000 22800000 1053 2038 1084;1085 2875;2876;2877;2878;2879;2880;2881 4539;4540;4541;4542;4543;4544;4545;4546;4547;4548;4549;4550 4540 1874 12 AQLSDYSDIVTTLDLAPPTK LIVDSVKELDSKTIRAQLSDYSDIVTTLDL YSDIVTTLDLAPPTKKLMMWKETGGVEKLF R A Q T K K 2 0 0 3 0 1 0 0 0 1 3 1 0 0 2 2 3 0 1 1 0 0 20 0 2147.0998 A0A024R9J0;O60216 A0A024R9J0 339 358 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 1.3851E-06 74.769 1 0.7616 0.79051 NaN 1 Median 0.7616 0.79051 NaN 1 0 Median NaN NaN NaN 0 0 Median 9874800 5249300 4625500 9874800 5249300 4625500 0 0 0 1054 280 1086 2882 4551;4552 4551 2 AQLSGLQLQPCLYK LFDFQKTGPPLVGPKAQLSGLQLQPCLYKR KAQLSGLQLQPCLYKRR_____________ K A Q Y K R 1 0 0 0 1 3 0 1 0 0 4 1 0 0 1 1 0 0 1 0 0 0 14 0 1617.8549 O43159;E9PPP6 O43159 441 454 RRP8 Ribosomal RNA-processing protein 8 yes no 2 0.00017671 72.652 1 2 0.72561 0.58168 25.38 3 Median 0.84291 0.86124 NaN 1 0 Median 0.68952 0.55815 5.8402 2 0 Median 29988000 15145000 14843000 14303000 6012400 8290500 15685000 9133000 6552100 1055 1380 1087 2883;2884;2885 4553;4554;4555;4556 4554 4 AQLSSSLQEGVMQK PSCEVNRECSVFLSKAQLSSSLQEGVMQKF KAQLSSSLQEGVMQKFNGHDALPFIPADKL K A Q Q K F 1 0 0 0 0 3 1 1 0 0 2 1 1 0 0 3 0 0 0 1 0 0 14 0 1504.7555 O96028;D6R9V2;D6RIS1 O96028 51 64 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 1.5539E-06 103.21 3 2 1.2005 1.2885 4.3727 3 Median 1.1726 1.2407 5.3383 2 0 Median 1.5863 1.2891 NaN 1 0 Median 52162000 20699000 31463000 46384000 19512000 26872000 5777800 1187000 4590700 1056 1435 1088;1089 2886;2887;2888;2889;2890 4557;4558;4559;4560;4561;4562 4557 1133 6 AQLVLVGATFPEGVGQLLNK IAEGPADLEDPFNPKAQLVLVGATFPEGVG VGATFPEGVGQLLNKVASPDAVTTITSSKL K A Q N K V 2 0 1 0 0 2 1 3 0 0 4 1 0 1 1 0 1 0 0 3 0 0 20 0 2053.1572 Q9NUL7 Q9NUL7 324 343 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 2 0.00012757 42.209 1 0.77933 0.82431 NaN 1 Median 0.77933 0.82431 NaN 1 0 Median NaN NaN NaN 0 0 Median 3774100 1993400 1780700 3774100 1993400 1780700 0 0 0 1057 2072 1090 2891 4563 4563 1 AQNDLIWNIK KKEKDKDSKLEKALKAQNDLIWNIKDELKK EKALKAQNDLIWNIKDELKKVCSTNDLKEL K A Q I K D 1 0 2 1 0 1 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1213.6455 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 240 249 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.020901 46.462 1 1.0141 0.83591 NaN 1 Median NaN NaN NaN 0 0 Median 1.0141 0.83591 NaN 1 0 Median 10841000 4904100 5937300 0 0 0 10841000 4904100 5937300 1058 139 1091 2892 4564 4564 1 AQNDLIWNIKDELK KKEKDKDSKLEKALKAQNDLIWNIKDELKK KAQNDLIWNIKDELKKVCSTNDLKELLIFN K A Q L K K 1 0 2 2 0 1 1 0 0 2 2 2 0 0 0 0 0 1 0 0 0 0 14 1 1698.8941 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 240 253 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 0.00010888 64.244 2 1.0914 0.9273 7.7931 2 Median NaN NaN NaN 0 0 Median 1.0914 0.9273 7.7931 2 0 Median 45521000 23209000 22312000 0 0 0 45521000 23209000 22312000 1059 139 1092 2893;2894 4565;4566;4567 4567 3 AQNIMESFENPFR AEDSKKGPLTVAQKKAQNIMESFENPFRMF KKAQNIMESFENPFRMFLPSLGHRAPVSQA K A Q F R M 1 1 2 0 0 1 2 0 0 1 0 0 1 2 1 1 0 0 0 0 0 0 13 0 1581.7246 Q01780 Q01780 681 693 EXOSC10 Exosome component 10 yes yes 2 0.00083539 69.721 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1060 1676 1093 2895;2896;2897;2898 4568;4569;4570;4571 4571 1473 4 AQNSELASTANMLR LERIARLEEKVKTLKAQNSELASTANMLRE KAQNSELASTANMLREQVAQLKQKVMNHVN K A Q L R E 3 1 2 0 0 1 1 0 0 0 2 0 1 0 0 2 1 0 0 0 0 0 14 0 1504.7304 P05412;Q6FHK0 P05412 289 302 JUN Transcription factor AP-1 yes no 2 7.8579E-05 90.685 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13888000 7063500 6824200 13888000 7063500 6824200 0 0 0 1061 1447 1094 2899;2900;2901;2902 4572;4573;4574;4575;4576 4576 1153 5 AQNTWGCGNSLR GAGATHSPPTDLVWKAQNTWGCGNSLRTAL VWKAQNTWGCGNSLRTALINSTGEEVAMRK K A Q L R T 1 1 2 0 1 1 0 2 0 0 1 0 0 0 0 1 1 1 0 0 0 0 12 0 1362.6099 P02545;W8QEH3;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 516 527 LMNA Prelamin-A/C;Lamin-A/C yes no 2 1.1201E-17 138.66 2 2 1.1576 1.0919 3.4495 4 Median 0.99577 1.0674 5.1911 2 0 Median 1.3438 1.0919 1.9041 2 0 Median 95613000 44502000 51110000 71199000 34556000 36643000 24414000 9946600 14467000 1062 1440 1095 2903;2904;2905;2906 4577;4578;4579;4580;4581;4582;4583;4584;4585 4580 9 AQPLEDLAGFTELSETSGHTQESLTAGK EEEPSRRRPRAPKEKAQPLEDLAGFTELSE SETSGHTQESLTAGKATKIPCESPPLEVVD K A Q G K A 3 0 0 1 0 2 4 3 1 0 4 1 0 1 1 3 4 0 0 0 0 0 28 0 2916.3989 P46013 P46013 2673 2700 MKI67 Antigen KI-67 yes yes 3 5.1232E-35 118.57 2 2 2.3305 2.378 17.717 4 Median 1.7332 2.0519 3.6725 2 0 Median 3.129 2.7732 4.5502 2 0 Median 2193300000 651320000 1542000000 1128700000 404060000 724610000 1064600000 247250000 817360000 1063 1569 1096 2907;2908;2909;2910 4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597 4593 12 AQPLEDLAGLK ASVTGSKRHPKTKEKAQPLEDLAGLKELFQ TKEKAQPLEDLAGLKELFQTPVCTDKPTTH K A Q L K E 2 0 0 1 0 1 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 11 0 1153.6343 P46013 P46013 1461 1471 MKI67 Antigen KI-67 yes no 2 0.0003981 98.044 2 2 2.4695 2.5022 20.696 4 Median 1.7593 2.0825 1.9283 2 0 Median 3.451 2.9786 0.61064 2 0 Median 1357900000 453100000 904800000 1089400000 390470000 698960000 268470000 62633000 205840000 1064 1569 1097 2911;2912;2913;2914 4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609 4603 12 AQPLSLEELLAK SKKDEEDEHGDKKPKAQPLSLEELLAKKKA KPKAQPLSLEELLAKKKAEEEAEAKPKFLS K A Q A K K 2 0 0 0 0 1 2 0 0 0 4 1 0 0 1 1 0 0 0 0 0 0 12 0 1310.7446 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56;F8VVA2 B3KY11 119 130 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.002854 57.532 1 2 1.091 0.89505 2.3092 3 Median 0.87765 0.89224 NaN 1 0 Median 1.1337 0.91237 2.7107 2 0 Median 27946000 13732000 14214000 16810000 8763700 8046400 11136000 4968100 6167500 1065 63 1098 2915;2916;2917 4610;4611;4612 4610 3 AQPSASLGVGYR TYRAQPSVSLGAAYRAQPSASLGVGYRTQP AYRAQPSASLGVGYRTQPMTAQAASYRAQP R A Q Y R T 2 1 0 0 0 1 0 2 0 0 1 0 0 0 1 2 0 0 1 1 0 0 12 0 1204.62 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 251 262 RBM14 RNA-binding protein 14 yes no 2 0.000197 90.108 1 2 1.07 0.94627 39.264 3 Median 1.6266 1.8095 NaN 1 0 Median 1.0532 0.91846 4.2197 2 0 Median 87435000 34263000 53172000 76665000 28600000 48065000 10771000 5663300 5107300 1066 571 1099 2918;2919;2920 4613;4614;4615;4616;4617 4613 5 AQPSVSLGAAYR ASYVAPLTAQPATYRAQPSVSLGAAYRAQP TYRAQPSVSLGAAYRAQPSASLGVGYRTQP R A Q Y R A 3 1 0 0 0 1 0 1 0 0 1 0 0 0 1 2 0 0 1 1 0 0 12 0 1218.6357 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 239 250 RBM14 RNA-binding protein 14 yes no 2 0.00023447 87.913 2 2 1.1004 1.6683 46.626 4 Linear 1.4513 1.6011 10.517 2 0 Median 0.8514 0.71894 0.23921 2 0 Median 106000000 43206000 62794000 93780000 36772000 57008000 12219000 6433600 5785600 1067 571 1100 2921;2922;2923;2924 4618;4619;4620;4621;4622;4623 4618 6 AQPSVSLGAPYR GYRTQPMTAQAASYRAQPSVSLGAPYRGQL SYRAQPSVSLGAPYRGQLASPSSQSAAASS R A Q Y R G 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 2 0 0 1 1 0 0 12 0 1244.6513 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 275 286 RBM14 RNA-binding protein 14 yes no 2 0.00020601 87.913 2 2 1.261 1.795 33.815 4 Linear 1.4882 1.6149 11.325 2 0 Median 1.0784 0.90912 0.97699 2 0 Median 112930000 47187000 65741000 101680000 41823000 59853000 11252000 5364200 5888100 1068 571 1101 2925;2926;2927;2928 4624;4625;4626;4627;4628;4629 4626 6 AQPTPSSSATQSKPTPVK ______________________________ TPSSSATQSKPTPVKPNYALKFTLAGHTKA R A Q V K P 2 0 0 0 0 2 0 0 0 0 0 2 0 0 4 4 3 0 0 1 0 0 18 1 1810.9425 P61964;V9GYQ5;V9GZ59 P61964 15 32 WDR5 WD repeat-containing protein 5 yes no 2;3 1.6488E-06 88.552 4 2 1.1196 1.2616 21.971 6 Median 0.95177 1.0937 16.083 4 0 Median 1.8562 1.5857 12.27 2 0 Median 97875000 49335000 48540000 84430000 44349000 40082000 13445000 4986600 8458600 1069 1630 1102 2929;2930;2931;2932;2933;2934 4630;4631;4632;4633;4634;4635;4636;4637 4633 8 AQPTPSSSATQSKPTPVKPNYALK ______________________________ TQSKPTPVKPNYALKFTLAGHTKAVSSVKF R A Q L K F 3 0 1 0 0 2 0 0 0 0 1 3 0 0 5 4 3 0 1 1 0 0 24 2 2497.3177 P61964;V9GYQ5;V9GZ59 P61964 15 38 WDR5 WD repeat-containing protein 5 yes no 4 4.1193E-06 46.178 1 1.7665 1.7472 NaN 1 Median NaN NaN NaN 0 0 Median 1.7665 1.7472 NaN 1 0 Median 6674300 2021800 4652600 0 0 0 6674300 2021800 4652600 1070 1630 1103 2935 4638;4639 4638 2 AQPVPHYGVPFKPQIPEAR PTKEDEEEDEPVVIKAQPVPHYGVPFKPQI PHYGVPFKPQIPEARTVEICPFSFDSRDKE K A Q A R T 2 1 0 0 0 2 1 1 1 1 0 1 0 1 5 0 0 0 1 2 0 0 19 1 2130.1374 Q643R0;Q9ULW0;B3KM90 Q643R0 513 531 HCTP4;TPX2 Targeting protein for Xklp2 yes no 4 1.0701E-05 45.704 2 2 1.133 1.0955 7.4688 4 Median 0.9503 1.095 12.807 2 0 Median 1.2674 1.0955 1.8257 2 0 Median 113420000 55951000 57469000 53397000 28728000 24670000 60023000 27224000 32799000 1071 1837 1104 2936;2937;2938;2939 4640;4641;4642;4643;4644;4645 4644 6 AQQEDALAQQAFEEAR QRLDGMGCLEFDEERAQQEDALAQQAFEEA QQEDALAQQAFEEARRRTREFEDRDRSHRE R A Q A R R 5 1 0 1 0 4 3 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 16 0 1803.8388 J3KS23;A0A024R6X2;Q13951;J3KRT0;A8K719 J3KS23 32 47 CBFB Core-binding factor subunit beta yes no 2 3.5018E-06 82.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5709000 0 5709000 5709000 0 5709000 0 0 0 1072 210 1105 2940 4646;4647 4647 2 AQQGIVFLDEVDK VIAKLLQDANYNVEKAQQGIVFLDEVDKIG EKAQQGIVFLDEVDKIGSVPGIHQLRDVGG K A Q D K I 1 0 0 2 0 2 1 1 0 1 1 1 0 1 0 0 0 0 0 2 0 0 13 0 1460.7511 Q9H072;A0A024R5X7;O76031 Q9H072 350 362 DKFZp586J151;CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2 0.013064 38.714 1 1.2239 1.2381 NaN 1 Median 1.2239 1.2381 NaN 1 0 Median NaN NaN NaN 0 0 Median 16442000 7888200 8553900 16442000 7888200 8553900 0 0 0 1073 191 1106 2941 4648 4648 1 AQQIHSQTSQQYPLYDLDLGK LKKSLLATMKTELQKAQQIHSQTSQQYPLY QTSQQYPLYDLDLGKFGEKVTQLTDRWQRI K A Q G K F 1 0 0 2 0 5 0 1 1 1 3 1 0 0 1 2 1 0 2 0 0 0 21 0 2432.1972 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 835 855 DSP;DSP variant protein Desmoplakin yes no 3 1.7736E-07 58.035 2 1 0.46063 0.41317 6.5525 2 Median 0.42358 0.43277 NaN 1 0 Median 0.50093 0.39447 NaN 1 0 Median 31571000 21610000 9961200 25788000 17587000 8200400 5782900 4022100 1760700 1074 1486 1107 2942;2943;2944 4649;4650;4651 4649 3 AQQPAAELMQDTR ELARLALVISELEGKAQQPAAELMQDTRDF GKAQQPAAELMQDTRDFLNRYPRKKFWVGK K A Q T R D 3 1 0 1 0 3 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 13 0 1457.6933 A0A024RCP3;Q12899 A0A024RCP3 246 258 TRIM26 Tripartite motif-containing protein 26 yes no 2 8.269E-11 112.13 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1075 365 1108 2945;2946;2947 4652;4653;4654 4652 273 3 AQQQEEQGSVNDVKEEEK WSVKPASSSFGSEAKAQQQEEQGSVNDVKE QEEQGSVNDVKEEEKEEKEVLPDQVEEEEE K A Q E K E 1 0 1 1 0 4 5 1 0 0 0 2 0 0 0 1 0 0 0 2 0 0 18 1 2073.9451 Q9Y4W2;B3KNR6 Q9Y4W2 552 569 LAS1L Ribosomal biogenesis protein LAS1L yes no 3 2.9892E-05 53.565 1 2 1.2543 1.1112 26.601 3 Median 1.5144 1.7239 NaN 1 0 Median 1.242 1.0889 2.861 2 0 Median 13821000 5227800 8593600 8849000 3101000 5748000 4972500 2126800 2845700 1076 2146 1109 2948;2949;2950 4655;4656;4657 4657 3 AQSLVISPPAPSPR SGKQESGSEIHVEVKAQSLVISPPAPSPRK KAQSLVISPPAPSPRKTPVASDQRRRSCKT K A Q P R K 2 1 0 0 0 1 0 0 0 1 1 0 0 0 4 3 0 0 0 1 0 0 14 0 1418.7882 P46013;Q70L73 P46013 573 586 MKI67 Antigen KI-67 no no 2 2.8798E-09 114.82 2 2 2.0859 2.3808 7.8598 3 Median 2.071 2.333 2.869 2 0 Median 3.2034 2.6609 NaN 1 0 Median 201450000 61970000 139480000 167580000 58032000 109540000 33871000 3937400 29934000 1077 1569;1864 1110 2951;2952;2953;2954 4658;4659;4660;4661;4662;4663;4664 4659 7 AQSYDIQAWK RKRKDHQPRRRLRNRAQSYDIQAWKKQCEE RLRNRAQSYDIQAWKKQCEELLNLIFQCED R A Q W K K 2 0 0 1 0 2 0 0 0 1 0 1 0 0 0 1 0 1 1 0 0 0 10 0 1208.5826 Q8WWQ0;Q9NWP3 Q8WWQ0 1313 1322 PHIP PH-interacting protein yes no 2 8.3436E-09 124.23 2 2 0.9943 0.90799 20.681 4 Median 0.72239 0.76748 0.0021472 2 0 Median 1.3548 1.0968 2.937 2 0 Median 92261000 52237000 40024000 79250000 46571000 32679000 13011000 5665500 7345700 1078 1942 1111 2955;2956;2957;2958 4665;4666;4667;4668;4669;4670 4668 6 AQTAHIVLEDGTK KWKFSRPGIRLLSVKAQTAHIVLEDGTKMK VKAQTAHIVLEDGTKMKGYSFGHPSSVAGE K A Q T K M 2 0 0 1 0 1 1 1 1 1 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1381.7201 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209;Q5R207;Q5R211;C9JTA4;E7EWJ3;Q05CV6 Q5R210 43 55 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.0011084 77.644 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5592600 0 5592600 5592600 0 5592600 0 0 0 1079 148 1112 2959;2960;2961 4671;4672;4673 4672 3 AQTEGINISEEALNHLGEIGTK MLYTPQEMKQIIKIRAQTEGINISEEALNH ISEEALNHLGEIGTKTTLRYSVQLLTPANL R A Q T K T 2 0 2 0 0 1 4 3 1 3 2 1 0 0 0 1 2 0 0 0 0 0 22 0 2323.1656 B5BUB1;Q9Y265;H7C4G5;J3QLR1 B5BUB1 379 400 RUVBL1 RuvB-like 1 yes no 3 3.1958E-59 147.21 2 2 0.97609 0.9587 3.8865 4 Median 0.82373 0.92964 3.1067 2 0 Median 1.1542 0.98258 2.2339 2 0 Median 395920000 204670000 191260000 255200000 138910000 116290000 140720000 65754000 74965000 1080 1076 1113 2962;2963;2964;2965 4674;4675;4676;4677;4678;4679;4680;4681;4682 4677 9 AQTGAPCLSFDIVR EELVMDEEAYVLYHRAQTGAPCLSFDIVRD RAQTGAPCLSFDIVRDHLGDNRTELPLTLY R A Q V R D 2 1 0 1 1 1 0 1 0 1 1 0 0 1 1 1 1 0 0 1 0 0 14 0 1533.761 Q8NCK5;Q9BQ67;Q8TCJ8;B2RDP6 Q8NCK5 60 73 GRWD1;DKFZp564C172 Glutamate-rich WD repeat-containing protein 1 yes no 2 5.7376E-05 91.961 2 2 0.72096 0.82301 13.968 3 Plateau 0.71209 0.7703 10.134 2 0 Median 0.7693 0.62586 NaN 1 0 Median 98158000 51682000 46476000 79195000 44700000 34496000 18963000 6982200 11981000 1081 1922 1114 2966;2967;2968;2969 4683;4684;4685;4686;4687;4688 4685 6 AQTLPTSVVTITSESSPGK HEVSASTQSTPASSRAQTLPTSVVTITSES PTSVVTITSESSPGKREKDKEKDKEKRFSL R A Q G K R 1 0 0 0 0 1 1 1 0 1 1 1 0 0 2 4 4 0 0 2 0 0 19 0 1901.9946 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;B4DIF8 D6W5C0 2240 2258 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 2.789E-09 80.706 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4404200 0 4404200 4404200 0 4404200 0 0 0 1082 415 1115 2970 4689 4689 1 AQTSLESQFTDRYPDNLK KIQQSYKKLLRKEKKAQTSLESQFTDRYPD SLESQFTDRYPDNLKHLYLAEEERHRKQAR K A Q L K H 1 1 1 2 0 2 1 0 0 0 2 1 0 1 1 2 2 0 1 0 0 0 18 1 2112.0124 Q9P031;F8VNY5 Q9P031 77 94 CCDC59 Thyroid transcription factor 1-associated protein 26 yes no 3 3.0326E-05 53.278 1 1.3656 1.1456 NaN 1 Median NaN NaN NaN 0 0 Median 1.3656 1.1456 NaN 1 0 Median 6430000 3017100 3412900 0 0 0 6430000 3017100 3412900 1083 2090 1116 2971 4690 4690 1 AQTTAQASTPGQPPPQPQAPSHAAGQSALPQR ASSTAASPAHPAKLRAQTTAQASTPGQPPP QAPSHAAGQSALPQRLVLPSQAQARLPSGE R A Q Q R L 7 1 0 0 0 7 0 2 1 0 1 0 0 0 7 3 3 0 0 0 0 0 32 0 3175.5759 Q96L91 Q96L91 1556 1587 EP400 E1A-binding protein p400 yes yes 3 0.00097326 29.859 2 1 0.93438 0.88333 29.734 2 Median 0.683 0.71584 NaN 1 0 Median 1.2783 1.09 NaN 1 0 Median 23974000 16842000 7131400 21170000 15807000 5363300 2803800 1035700 1768100 1084 1977 1117 2972;2973;2974 4691;4692;4693;4694 4692 4 AQTVTDSMFAVASK SPATSQSIAPPVPLKAQTVTDSMFAVASKD KAQTVTDSMFAVASKDAGCVNKSTHEFKPQ K A Q S K D 3 0 0 1 0 1 0 0 0 0 0 1 1 1 0 2 2 0 0 2 0 0 14 0 1454.7075 A0JLU2;B4DYG2;O43683;A8K5A6 A0JLU2 390 403 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 0.00024782 81.92 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1085 641 1118 2975;2976 4695;4696 4696 498 2 AQVADVVVSR DPATHRQKLYTLQDKAQVADVVVSRWLRVT TLQDKAQVADVVVSRWLRVTVAGGVHISGL K A Q S R W 2 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 4 0 0 10 0 1042.5771 A0A0U1RQF0;P49327 A0A0U1RQF0 1073 1082 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00069328 82.749 2 2 1.8634 1.9888 59.903 4 Linear 1.7249 1.826 8.9502 2 0 Median 0.75324 0.66459 21.674 2 0 Median 73343000 31346000 41996000 69118000 29188000 39929000 4225000 2158300 2066700 1086 587 1119 2977;2978;2979;2980 4697;4698;4699;4700;4701;4702 4698 6 AQVEQELTTLR MEKHKKFAEQTLRQKAQVEQELTTLRLQLE LRQKAQVEQELTTLRLQLEETDHQKNLLDE K A Q L R L 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 11 0 1286.683 Q15149 Q15149 2319 2329 PLEC Plectin yes yes 2 6.3512E-05 98.048 2 1.3221 1.349 NaN 1 Median 1.3221 1.349 NaN 1 0 Median NaN NaN NaN 0 0 Median 42747000 27637000 15110000 42747000 27637000 15110000 0 0 0 1087 1754 1120 2981;2982 4703;4704;4705 4705 3 AQVFSCPACR CQHNVCKDCLDRSFRAQVFSCPACRYDLGR DRSFRAQVFSCPACRYDLGRSYAMQVNQPL R A Q C R Y 2 1 0 0 2 1 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 10 0 1194.5274 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 767 776 UHRF1 E3 ubiquitin-protein ligase UHRF1 no no 2 0.0061058 59.245 1 2 0.74047 0.62837 11.712 2 Median NaN NaN NaN 0 0 Median 0.74047 0.62837 11.712 2 0 Median 8016900 4419800 3597000 0 0 0 8016900 4419800 3597000 1088 406 1121 2983;2984;2985 4706;4707;4708;4709 4708 4 AQVIYTR ELLSKGLIKLVSKHRAQVIYTRNTKGGDAP IKLVSKHRAQVIYTRNTKGGDAPAAGEDA_ R A Q T R N 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 7 0 849.47085 P62851 P62851 105 111 RPS25 40S ribosomal protein S25 yes yes 2 0.00014144 148.54 2 1.0883 1.2639 5.4217 2 Median 1.0883 1.2639 5.4217 2 0 Median NaN NaN NaN 0 0 Median 465470000 221020000 244450000 465470000 221020000 244450000 0 0 0 1089 1649 1122 2986;2987 4710;4711;4712 4710 3 AQVQLQLFK EEADRYQRLKDEVVRAQVQLQLFKLYHNEV KDEVVRAQVQLQLFKLYHNEVEIEKLNKEL R A Q F K L 1 0 0 0 0 3 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1073.6233 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;Q68EN4;H0Y7K8;Q5H934 Q14683 219 227 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.019957 58.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14102000 14102000 0 14102000 14102000 0 0 0 0 1090 1739 1123 2988 4713 4713 1 AQVSLLIR SVVAKFNASQLITQRAQVSLLIRRELTERA SQLITQRAQVSLLIRRELTERAKDFSLILD R A Q I R R 1 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 8 0 898.56 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 158 165 PHB2 Prohibitin-2 yes no 2 0.001025 114.78 2 1.5184 1.7093 1.9869 2 Median 1.5184 1.7093 1.9869 2 0 Median NaN NaN NaN 0 0 Median 207220000 79447000 127780000 207220000 79447000 127780000 0 0 0 1091 1328 1124 2989;2990 4714;4715;4716;4717;4718;4719 4714 6 AQVYVPLK KFNPEAGANCLVKYRAQVYVPLKELLNETE NCLVKYRAQVYVPLKELLNETEEEINKALN R A Q L K E 1 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 8 0 916.5382 A8K031;O14777;Q05DQ6 A8K031 455 462 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.038748 47.849 1 1.1099 1.1998 NaN 1 Median 1.1099 1.1998 NaN 1 0 Median NaN NaN NaN 0 0 Median 21950000 10164000 11785000 21950000 10164000 11785000 0 0 0 1092 696 1125 2991 4720 4720 1 AQYDELAR APKSQDLAKIMADIRAQYDELARKNREELD KIMADIRAQYDELARKNREELDKYWSQQIE R A Q A R K 2 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 8 0 964.46141 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 254 261 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.0092533 75.109 2 1 0.98669 1.1554 4.6506 3 Plateau 0.97609 1.1493 0.7475 2 0 Median 1.3015 1.0609 NaN 1 0 Median 1080500000 558730000 521820000 1065400000 551840000 513530000 15181000 6892000 8288800 1093 316 1126 2992;2993;2994 4721;4722;4723;4724;4725 4722 5 AQYEDIANR NSRSLDMDSIIAEVKAQYEDIANRSRAEAE IIAEVKAQYEDIANRSRAEAESMYQIKYEE K A Q N R S 2 1 1 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1078.5043 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__O95678;O95678;CON__Q8BGZ7 CON__P05787 265 273 KRT8;KRT75 Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 75 no no 2 7.7188E-06 129.68 2 2 1.3776 1.3873 11.594 4 Median 1.0721 1.266 0.074524 2 0 Median 1.7811 1.5454 2.4042 2 0 Median 1751800000 826350000 925470000 1599300000 771910000 827400000 152500000 54440000 98063000 + 1094 1156;1147;1180 1127 2995;2996;2997;2998 4726;4727;4728;4729;4730;4731;4732;4733 4728 8 AQYEDIAQK NNRSLDLDSIIAEVKAQYEDIAQKSKAEAE IIAEVKAQYEDIAQKSKAEAESLYQSKYEE K A Q Q K S 2 0 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 9 0 1064.5138 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;H6VRF9;H6VRG2 H6VRG3 356 364 KRT1 Keratin, type II cytoskeletal 1 no no 2 0.042582 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101730000 101730000 0 0 0 0 101730000 101730000 0 + 1095 1308;1309 1128 2999 4734 4734 1 AQYEEIANR NNRNLDLDSIIAEVKAQYEEIANRSRTEAE IIAEVKAQYEEIANRSRTEAESWYQTKYEE K A Q N R S 2 1 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1092.52 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;H0YIN9 CON__P13647 344 352 KRT5 Keratin, type II cytoskeletal 5 yes no 2 1.3909E-71 215.39 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 153540000 153540000 0 134380000 134380000 0 19158000 19158000 0 + 1096 1162 1129 3000;3001;3002 4735;4736;4737 4736 3 AQYEEIAQR NSRNLDLDSIIAEVKAQYEEIAQRSKEEAE IIAEVKAQYEEIAQRSKEEAEALYHSKYEE K A Q Q R S 2 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1106.5356 CON__P35908;P35908;Q01546;B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4 CON__P35908 360 368 KRT2;KRT76;KRT6C;KRT6A Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 2.2264E-11 138.54 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 414520000 414520000 0 361650000 361650000 0 52870000 52870000 0 + 1097 1166;859;1154 1130 3003;3004;3005;3006 4738;4739;4740;4741 4739 4 ARDINTEQGQNVLEILQDCFEEK HLKNGYRRRFCRPSRARDINTEQGQNVLEI GQNVLEILQDCFEEKSLANDFSTNSTKSVP R A R E K S 1 1 2 2 1 3 4 1 0 2 2 1 0 1 0 0 1 0 0 1 0 0 23 1 2748.3025 Q03188 Q03188 23 45 CENPC Centromere protein C yes yes 3 0.0016237 27.554 2 1.1546 0.97036 18.978 2 Median NaN NaN NaN 0 0 Median 1.1546 0.97036 18.978 2 0 Median 6877900 2886100 3991800 0 0 0 6877900 2886100 3991800 1098 1681 1131 3007;3008 4742;4743 4742 2 ARENIPTDR ARLETYENARKVLNKARENIPTDRHIWITA RKVLNKARENIPTDRHIWITAAKLEEANGN K A R D R H 1 2 1 1 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 9 1 1070.5469 O94906 O94906 456 464 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.01032 40.994 1 0.77896 0.87766 NaN 1 Median 0.77896 0.87766 NaN 1 0 Median NaN NaN NaN 0 0 Median 5268600 3572900 1695700 5268600 3572900 1695700 0 0 0 1099 1418 1132 3009 4744 4744 1 ARENPSEEAQNLVEFTDEEGYGR EICVPMSVEFEELLKARENPSEEAQNLVEF AQNLVEFTDEEGYGRYLDLHDCYLKYINLK K A R G R Y 2 2 2 1 0 1 6 2 0 0 1 0 0 1 1 1 1 0 1 1 0 0 23 1 2639.1736 Q53HM6;B3KY12;A8K7V1;A8K566;Q12874;B4DW90 Q53HM6 116 138 SF3A3 Splicing factor 3A subunit 3 yes no 3 0.0039344 23.913 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8992500 4467200 4525300 8992500 4467200 4525300 0 0 0 1100 747 1133 3010 4745 4745 1 ARFEELCSDLFR DSLFEGIDFYTSITRARFEELCSDLFRSTL ITRARFEELCSDLFRSTLEPVEKALRDAKL R A R F R S 1 2 0 1 1 0 2 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 12 1 1541.7297 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5;P48741 A8K5I0 300 311 HEL-S-103;HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 3 0.03979 19.754 1 0.89982 0.98765 NaN 1 Median 0.89982 0.98765 NaN 1 0 Median NaN NaN NaN 0 0 Median 12429000 7879300 4549800 12429000 7879300 4549800 0 0 0 1101 533;845 1134 3011 4746 4746 1 ARFEELNADLFR DSLYEGIDFYTSITRARFEELNADLFRGTL ITRARFEELNADLFRGTLDPVEKALRDAKL R A R F R G 2 2 1 1 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 12 1 1479.747 E9PN89;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;A0A024R6B5;P54652 V9HW22 300 311 HSPA8;HEL-S-72p;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2;3 2.6001E-08 112.73 3 3 1.4249 1.2434 23.612 4 Median 1.611 1.8724 NaN 1 0 Median 1.3524 1.2408 7.8293 3 0 Median 141220000 51056000 90167000 87049000 26799000 60250000 54173000 24257000 29917000 1102 1467;1248 1135 3012;3013;3014;3015;3016;3017 4747;4748;4749;4750;4751;4752;4753;4754;4755;4756 4756 10 ARPADCVLCPNK IPEGQWLCRHCLQSRARPADCVLCPNKGGA QSRARPADCVLCPNKGGAFKKTDDDRWGHV R A R N K G 2 1 1 1 2 0 0 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 12 1 1399.67 A0A024R4W4;A0A024R4V5;O95696;B4E3L9 A0A024R4W4 266 277 BRD1 Bromodomain-containing protein 1 yes no 2 0.001191 87.258 1 1 1.3016 1.2652 39.652 2 Median 0.83734 0.95588 NaN 1 0 Median 2.0234 1.6747 NaN 1 0 Median 24732000 12905000 11826000 20792000 11272000 9519700 3939600 1633000 2306600 1103 162 1136 3018;3019 4757;4758;4759 4758 3 ARPFPDGLAEDIDK CLSKSPNKHNRLYMKARPFPDGLAEDIDKG KARPFPDGLAEDIDKGEVSARQELKQRARY K A R D K G 2 1 0 3 0 0 1 1 0 1 1 1 0 1 2 0 0 0 0 0 0 0 14 1 1542.7678 P13639;Q8TA90;B4DPU3;Q6W6M8;M0R0I6 P13639 606 619 EEF2 Elongation factor 2 yes no 2;3 3.7925E-05 90.412 4 2 2.8145 3.2365 42.492 5 Median 3.2857 3.876 12.519 3 0 Median 2.1415 1.8352 29.991 2 0 Median 262560000 48022000 214540000 257780000 46768000 211020000 4778700 1253600 3525200 1104 1478 1137 3020;3021;3022;3023;3024;3025 4760;4761;4762;4763;4764;4765;4766 4762 7 ARPFPDGLAEDIDKGEVSAR CLSKSPNKHNRLYMKARPFPDGLAEDIDKG DGLAEDIDKGEVSARQELKQRARYLAEKYE K A R A R Q 3 2 0 3 0 0 2 2 0 1 1 1 0 1 2 1 0 0 0 1 0 0 20 2 2142.0705 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 606 625 EEF2 Elongation factor 2 yes no 4 0.024515 20.596 1 2.3241 2.3099 NaN 1 Median NaN NaN NaN 0 0 Median 2.3241 2.3099 NaN 1 0 Median 2808900 713960 2094900 0 0 0 2808900 713960 2094900 1105 1478 1138 3026 4767 4767 1 ARPNTVISQEPFVPK LEEELRQQKEAACFKARPNTVISQEPFVPK ARPNTVISQEPFVPKKEKKSVAEGLSGSLV K A R P K K 1 1 1 0 0 1 1 0 0 1 0 1 0 1 3 1 1 0 0 2 0 0 15 1 1681.9152 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 627 641 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2;3 5.295E-11 105.14 3 2 0.83118 0.93726 14.841 5 Median 0.75315 0.89966 5.9326 3 0 Median 1.3396 1.1525 1.8965 2 0 Median 161060000 87302000 73762000 120570000 70048000 50518000 40499000 17254000 23245000 1106 1837 1139 3027;3028;3029;3030;3031 4768;4769;4770;4771;4772;4773;4774;4775 4770 8 ARPSQFPEQSSSAQQNAR NDPPSRDNRVVGSARARPSQFPEQSSSAQQ SQFPEQSSSAQQNARRKSNCVKEVEKLQEK R A R A R R 3 2 1 0 0 4 1 0 0 0 0 0 0 1 2 4 0 0 0 0 0 0 18 1 1987.946 B0AZS5;D6R9M0 B0AZS5 91 108 KIF2A Kinesin-like protein yes no 3 6.6397E-23 144.3 2 2 0.9187 0.8921 19.173 4 Median 0.68937 0.7378 12.147 2 0 Median 1.1161 1.0043 2.0464 2 0 Median 28661000 16266000 12395000 24369000 13965000 10404000 4292400 2301900 1990500 1107 804 1140 3032;3033;3034;3035 4776;4777;4778;4779;4780;4781 4778 6 ARPSVLWCYK QVVILHHMLSKATVKARPSVLWCYKKELGF KATVKARPSVLWCYKKELGFSSHRKKRMRQ K A R Y K K 1 1 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 0 0 10 1 1278.6543 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 51 60 NAT10 N-acetyltransferase 10 no no 2 1.805E-06 107.15 2 2 1.1577 0.98164 22.301 3 Median 0.6368 0.73112 NaN 1 0 Median 1.2482 1.0542 10.088 2 0 Median 52355000 32443000 19912000 36258000 25950000 10308000 16097000 6492300 9604600 1108 2023;1687 1141 3036;3037;3038;3039 4782;4783;4784;4785;4786 4782 5 ARQEELYSELQAR LTGLSLLPLSEKAARARQEELYSELQARET ARARQEELYSELQARETFEKTPVEVPVGGF R A R A R E 2 2 0 0 0 2 3 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 13 1 1591.7954 Q15149;D3DWL0 Q15149 3356 3368 PLEC;PLEC1 Plectin yes no 2;3 2.072E-13 128.85 2 1.8954 2.1568 NaN 1 Median 1.8954 2.1568 NaN 1 0 Median NaN NaN NaN 0 0 Median 51962000 13532000 38430000 51962000 13532000 38430000 0 0 0 1109 1754 1142 3040;3041 4787;4788;4789;4790 4788 4 ASAAPKPEPVPVQK KIKGCTGSLNMTLQRASAAPKPEPVPVQKP RASAAPKPEPVPVQKPTVTSVCSETSQELA R A S Q K P 3 0 0 0 0 1 1 0 0 0 0 2 0 0 4 1 0 0 0 2 0 0 14 1 1417.7929 B7Z8X5;Q4W5K9;A0A024RDE8;Q96HC4;H0Y929;A0A0D9SFR4;H0YBI4 B7Z8X5 84 97 LIM;PDLIM5 PDZ and LIM domain protein 5 yes no 2 0.03626 64.439 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3890500 0 3890500 3890500 0 3890500 0 0 0 1110 1105 1143 3042 4791 4791 1 ASAEGPLLGPEAAPSGEGAGSK KVPEVTEKKNKKLKKASAEGPLLGPEAAPS LGPEAAPSGEGAGSKGEAVLRPGLDAEPEL K A S S K G 5 0 0 0 0 0 3 5 0 0 2 1 0 0 3 3 0 0 0 0 0 0 22 0 1951.9487 C9JQV0;Q9BRJ6 C9JQV0 22 43 C7orf50 Uncharacterized protein C7orf50 yes no 2 4.0102E-08 70.529 2 1 0.89723 0.91881 40.861 3 Plateau 0.87341 0.88323 11.022 2 0 Median 0.56416 0.44091 NaN 1 0 Median 33259000 15589000 17670000 29848000 13316000 16532000 3410900 2272300 1138600 1111 1141 1144 3043;3044;3045 4792;4793;4794;4795;4796;4797 4793 6 ASAETPAEEQELLTQVCGDVLSTCEHR EVISSAVDALQRLCRASAETPAEEQELLTQ LTQVCGDVLSTCEHRLSNIVLKENGTGNMD R A S H R L 3 1 0 1 2 2 5 1 1 0 3 0 0 0 1 2 3 0 0 2 0 0 27 0 3029.3706 P42695;G3V1A9 P42695 808 834 NCAPD3 Condensin-2 complex subunit D3 yes no 3 3.3272E-16 70.449 2 2 1.1644 1.1149 47.496 4 Median 0.69883 0.73738 5.1902 2 0 Median 1.9535 1.6741 4.2075 2 0 Median 121630000 52389000 69237000 60603000 32818000 27785000 61023000 19571000 41452000 1112 1565 1145 3046;3047;3048;3049 4798;4799;4800;4801;4802 4801 5 ASAFALQEQPVVNAVIDDTTK KKHNLKLGFMSAFVKASAFALQEQPVVNAV QEQPVVNAVIDDTTKEVVYRDYIDISVAVA K A S T K E 4 0 1 2 0 2 1 0 0 1 1 1 0 1 1 1 2 0 0 3 0 0 21 0 2216.1325 Q86TW7;Q86TQ8;Q6IBS5;A0A024R6C9;P36957 Q86TW7 203 223 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 2 3.3694E-07 60.401 2 0.83788 0.84301 15.982 2 Median 0.83788 0.84301 15.982 2 0 Median NaN NaN NaN 0 0 Median 16336000 9595800 6740600 16336000 9595800 6740600 0 0 0 1113 200 1146 3050;3051 4803;4804;4805 4804 3 ASAGAEQTPGPLSQSPGLVK AKAFLYEPTTQASGRASAGAEQTPGPLSQS EQTPGPLSQSPGLVKQAKQMVGGQQLPALA R A S V K Q 3 0 0 0 0 2 1 3 0 0 2 1 0 0 3 3 1 0 0 1 0 0 20 0 1893.9796 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q9H6H8 B2RWP5 2290 2309 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.026935 56.569 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1114 898 1147 3052 4806 4806 1 ASAGHVAVSSPTPETGPLQR NPAMSPAVSQPCTPRASAGHVAVSSPTPET VAVSSPTPETGPLQRLLPKARPMSLSTIAI R A S Q R L 3 1 0 0 0 1 1 2 1 0 1 0 0 0 3 3 2 0 0 2 0 0 20 0 1960.9967 P42695;Q96FA6 P42695 1320 1339 NCAPD3 Condensin-2 complex subunit D3 yes no 3 6.0273E-07 45.138 1 1 1.4114 1.339 9.2423 2 Median 1.1872 1.2543 NaN 1 0 Median 1.6779 1.4294 NaN 1 0 Median 43408000 18691000 24717000 40474000 17661000 22813000 2933900 1030100 1903800 1115 1565 1148 3053;3054 4807;4808;4809 4809 3 ASAPSPNAQVACDHCLK LAREPPADVWTPPARASAPSPNAQVACDHC APSPNAQVACDHCLKEAAVKTCLVCMASFC R A S L K E 4 0 1 1 2 1 0 0 1 0 1 1 0 0 2 2 0 0 0 1 0 0 17 0 1824.8247 Q14258;Q59GW5 Q14258 96 112 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 3 8.7262E-06 77.191 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13858000 0 13858000 13858000 0 13858000 0 0 0 1116 1731;1802 1149 3055;3056 4810;4811 4811 2 ASASGSGAQVGGPISSGSSASSVTVTR SRTVLCGTCGQPADKASASGSGAQVGGPIS PISSGSSASSVTVTRSYRSVGGSGGGSFGD K A S T R S 4 1 0 0 0 1 0 5 0 1 0 0 0 0 1 9 2 0 0 3 0 0 27 0 2364.1517 P02545;A0A0C4DGC5 P02545 598 624 LMNA Prelamin-A/C;Lamin-A/C yes no 2 8.7539E-54 139.9 2 1 1.329 1.5267 14.604 3 Plateau 1.3103 1.4984 2.6502 2 0 Median 1.3674 1.1659 NaN 1 0 Median 288500000 120550000 167950000 251720000 104850000 146870000 36779000 15697000 21082000 1117 1440 1150 3057;3058;3059 4812;4813;4814;4815;4816;4817 4816 6 ASAVSELSPR KPWPDATYGTGSASRASAVSELSPRERSPA GSASRASAVSELSPRERSPALKSPLQSVVV R A S P R E 2 1 0 0 0 0 1 0 0 0 1 0 0 0 1 3 0 0 0 1 0 0 10 0 1015.5298 Q9Y2W1;Q7Z5U1;Q05D20;Q6P0P7;Q6PJV4 Q9Y2W1 236 245 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 4.3914E-06 109.44 1 0.9566 1.088 NaN 1 Median 0.9566 1.088 NaN 1 0 Median NaN NaN NaN 0 0 Median 118340000 59771000 58568000 118340000 59771000 58568000 0 0 0 1118 2128 1151 3060 4818;4819 4819 2 ASDFSLEASVAEMK TDGTLQKCFEDSNGKASDFSLEASVAEMKE KASDFSLEASVAEMKEYITKFSLERQTWDQ K A S M K E 3 0 0 1 0 0 2 0 0 0 1 1 1 1 0 3 0 0 0 1 0 0 14 0 1483.6865 Q4G1A1;A8K3X3;Q9H410;Q5JW53;Q5JW54;Q5JW57 Q4G1A1 183 196 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 0.0059688 45.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3718700 3718700 0 3718700 3718700 0 0 0 0 1119 727 1152 3061 4820 4820 562 1 ASDGSFSLPLK MDLSIVRLRFSAFLRASDGSFSLPLKPVIS AFLRASDGSFSLPLKPVISQPIHDSKSPGA R A S L K P 1 0 0 1 0 0 0 1 0 0 2 1 0 1 1 3 0 0 0 0 0 0 11 0 1120.5764 Q00653;A0A1P8C958;D3DR86 Q00653 200 210 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2 0.0073711 52.725 1 2.4463 2.4639 NaN 1 Median 2.4463 2.4639 NaN 1 0 Median NaN NaN NaN 0 0 Median 13441000 3663300 9777900 13441000 3663300 9777900 0 0 0 1120 1674 1153 3062 4821 4821 1 ASDLEDEESAAR RDSGSDQDLDGAGVRASDLEDEESAARGPS GVRASDLEDEESAARGPSQEEEDNHSDEED R A S A R G 3 1 0 2 0 0 3 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 12 0 1291.5528 E7ERS3;B4DTK7;Q86VM9;H3BPD0;B4DZ24 E7ERS3 45 56 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 2 0.00044103 70.942 1 0.59265 0.59779 NaN 1 Median 0.59265 0.59779 NaN 1 0 Median NaN NaN NaN 0 0 Median 6115000 3876800 2238200 6115000 3876800 2238200 0 0 0 1121 1033 1154 3063 4822 4822 1 ASDPGLPAEEPK GLPDGRFHLPPRIHRASDPGLPAEEPKEKS IHRASDPGLPAEEPKEKSSRKVAEPELMGT R A S P K E 2 0 0 1 0 0 2 1 0 0 1 1 0 0 3 1 0 0 0 0 0 0 12 0 1209.5877 Q53SY7;F8VPD4;P27708 Q53SY7 1784 1795 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0002022 79.201 3 0.92234 0.94212 NaN 1 Median 0.92234 0.94212 NaN 1 0 Median NaN NaN NaN 0 0 Median 45488000 27780000 17708000 45488000 27780000 17708000 0 0 0 1122 1259 1155 3064;3065;3066 4823;4824;4825;4826 4825 4 ASDQLQVGVEFEASTR VTLGQAGMHATYYHKASDQLQVGVEFEAST SDQLQVGVEFEASTRMQDTSVSFGYQLDLP K A S T R M 2 1 0 1 0 2 2 1 0 0 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1735.8377 O96008;K7EKG4 O96008 278 293 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 0.0088297 47.915 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3499700 0 3499700 0 0 0 3499700 0 3499700 1123 1433 1156 3067;3068;3069 4827;4828;4829 4828 3 ASEIMVDDEELAQHPATTEDIR TDFLRAANPVDFLSKASEIMVDDEELAQHP DEELAQHPATTEDIRVCCQDIRVLGRKELR K A S I R V 3 1 0 3 0 1 4 0 1 2 1 0 1 0 1 1 2 0 0 1 0 0 22 0 2469.1329 Q8IY81;B4DKU3 Q8IY81 270 291 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 3 1.0892E-29 131.59 2 3 1.2159 1.121 22.158 5 Median 1.1911 1.3519 3.2586 2 0 Median 1.2402 1.0447 18.358 3 0 Median 262680000 126520000 136160000 220560000 106110000 114450000 42118000 20405000 21713000 1124 1898 1157;1158 3070;3071;3072;3073;3074 4830;4831;4832;4833;4834;4835;4836;4837;4838 4831 1739 9 ASELHLLETPLVVK PSSSQLKGSPQAISRASELHLLETPLVVKK RASELHLLETPLVVKKAKSLAMSVTTSGFS R A S V K K 1 0 0 0 0 0 2 0 1 0 4 1 0 0 1 1 1 0 0 2 0 0 14 0 1547.8923 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1167 1180 AHCTF1 Protein ELYS yes no 2;3 6.1821E-05 77.062 4 3 1.4544 1.5391 25.21 6 Median 1.4184 1.5793 11.649 3 0 Plateau 2.5424 2.0948 34.71 3 0 Median 197100000 76296000 120800000 114590000 51043000 63543000 82514000 25253000 57261000 1125 1945 1159 3075;3076;3077;3078;3079;3080;3081 4839;4840;4841;4842;4843;4844;4845;4846;4847;4848 4839 10 ASELNPESIYSVFK LSRGGYTTALKSFTKASELNPESIYSVFKV KASELNPESIYSVFKVAAIQQILGKYKEAV K A S F K V 1 0 1 0 0 0 2 0 0 1 1 1 0 1 1 3 0 0 1 1 0 0 14 0 1582.7879 Q6PGP7;D6RCE2 Q6PGP7 624 637 TTC37 Tetratricopeptide repeat protein 37 yes no 2 0.0088712 37.968 1 1.0971 1.0881 NaN 1 Median 1.0971 1.0881 NaN 1 0 Median NaN NaN NaN 0 0 Median 6012500 2753500 3259000 6012500 2753500 3259000 0 0 0 1126 1855 1160 3082 4849 4849 1 ASEMAGPPQMPNDFLSFQDIATEAAHPIR YYGLVMDLLVLGLHRASEMAGPPQMPNDFL LSFQDIATEAAHPIRLFCRYIDRIHIFFRF R A S I R L 5 1 1 2 0 2 2 1 1 2 1 0 2 2 4 2 1 0 0 0 0 0 29 0 3140.4696 Q6P2Q9 Q6P2Q9 1058 1086 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 3.0902E-16 68.934 1 2.0556 2.252 NaN 1 Median 2.0556 2.252 NaN 1 0 Median NaN NaN NaN 0 0 Median 31412000 10773000 20639000 31412000 10773000 20639000 0 0 0 1127 1854 1161 3083 4850 4850 1705;1706 1 ASESSKPWPDATYGTGSASR AKEQTFSGGTSQDTKASESSKPWPDATYGT KPWPDATYGTGSASRASAVSELSPRERSPA K A S S R A 3 1 0 1 0 0 1 2 0 0 0 1 0 0 2 5 2 1 1 0 0 0 20 1 2053.9341 Q9Y2W1;Q7Z5U1;Q05D20;Q6P0P7;Q6PJV4 Q9Y2W1 216 235 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3 0.060136 13.608 1 1.1632 1.0015 NaN 1 Median NaN NaN NaN 0 0 Median 1.1632 1.0015 NaN 1 0 Median 2424300 1155600 1268800 0 0 0 2424300 1155600 1268800 1128 2128 1162 3084 4851 4851 1 ASEVEEILDGNDEK DHGYTTLATSVTLLKASEVEEILDGNDEKY KASEVEEILDGNDEKYKAVSISTEPPTYLR K A S E K Y 1 0 1 2 0 0 4 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 14 0 1546.6999 Q9H836;G5E975;Q12824;B5MCL5;Q86WI8;A0A0U1RQQ2;Q86WI7;A0A0U1RRB8;C9JTA6;A0A0G2JSE9;B4E117;B4DRT1 Q9H836 84 97 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 2 3.5111E-57 191.52 2 2 1.1091 1.0219 25.366 4 Median 0.78729 0.83626 2.1917 2 0 Median 1.608 1.29 6.8016 2 0 Median 81506000 40462000 41045000 69812000 36189000 33623000 11695000 4273000 7421600 1129 1276 1163 3085;3086;3087;3088 4852;4853;4854;4855;4856;4857;4858 4853 7 ASEVFLQR ELYYVNRDTLFCYHKASEVFLQRLMALYVA TLFCYHKASEVFLQRLMALYVASHYKNSPN K A S Q R L 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 8 0 948.50288 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 521 528 NAT10 N-acetyltransferase 10 no no 2 1.733E-05 143 3 2 1.1633 1.172 21.872 5 Median 0.88328 1.0222 29.019 3 0 Median 1.3643 1.1784 0.76763 2 0 Median 855270000 413640000 441630000 784670000 382980000 401690000 70601000 30662000 39939000 1130 2023;1687 1164 3089;3090;3091;3092;3093 4859;4860;4861;4862;4863;4864;4865;4866;4867;4868 4864 9 ASEVMGPVEAAPEYR EIMMKIEEYISKQAKASEVMGPVEAAPEYR ASEVMGPVEAAPEYRVIVDANNLTVEIENE K A S Y R V 3 1 0 0 0 0 3 1 0 0 0 0 1 0 2 1 0 0 1 2 0 0 15 0 1604.7505 B4DWW8;E7EVX8;Q8WWY3;E7EU94;E7ESX0;E7EN72 B4DWW8 77 91 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 9.7344E-05 85.288 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1131 1046 1165 3094;3095;3096 4869;4870;4871 4869 820 3 ASEVQEFTAEFLEK ERFRAYQDYILADCKASEVQEFTAEFLEKV KASEVQEFTAEFLEKVLEPSGWRAVWHTNV K A S E K V 2 0 0 0 0 1 4 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 14 0 1626.7777 B2RDX0;A8K7Z9;A0A024R6R1;Q8NEM2 B2RDX0 95 108 SHCBP1 SHC SH2 domain-binding protein 1 yes no 2 0.00019192 70.488 2 0.89915 0.70672 4.5184 2 Median NaN NaN NaN 0 0 Median 0.89915 0.70672 4.5184 2 0 Median 6469100 2753200 3715900 0 0 0 6469100 2753200 3715900 1132 207 1166 3097;3098 4872;4873;4874;4875 4874 4 ASFASASAEVGKK SEEEEEERKKKCPKKASFASASAEVGKKGK KKASFASASAEVGKKGKKKCQKQGPPCSDS K A S K K G 4 0 0 0 0 0 1 1 0 0 0 2 0 1 0 3 0 0 0 1 0 0 13 1 1251.6459 O43159;E9PPY3 O43159 79 91 RRP8 Ribosomal RNA-processing protein 8 yes no 2 0.0041606 53.569 1 1 0.85309 0.85177 14.859 2 Median 0.82814 0.94613 NaN 1 0 Median 0.87878 0.76681 NaN 1 0 Median 17093000 9187200 7905800 14730000 8014300 6716100 2362600 1172900 1189700 1133 1380 1167 3099;3100 4876;4877 4876 2 ASFENNCEIGCFAK ______________________________ RASFENNCEIGCFAKLTNTYCLVAIGGSEN R A S A K L 2 0 2 0 2 0 2 1 0 1 0 1 0 2 0 1 0 0 0 0 0 0 14 0 1645.6865 P56537;B7ZBH1;F8WD20;B4DJH0;A0A0B4J1Y7;F8WDS6 P56537 5 18 EIF6 Eukaryotic translation initiation factor 6 yes no 2 4.5577E-15 136.48 2 2 0.96711 0.92122 2.7746 4 Median 0.82942 0.93377 4.3326 2 0 Median 1.1197 0.92122 1.5789 2 0 Median 257620000 135400000 122220000 189890000 102720000 87170000 67729000 32681000 35048000 1134 1619 1168 3101;3102;3103;3104 4878;4879;4880;4881;4882;4883;4884 4881 7 ASFPVQILPNLYLGSAR GLDSEGATPPPVGLRASFPVQILPNLYLGS FPVQILPNLYLGSARDSANLESLAKLGIRY R A S A R D 2 1 1 0 0 1 0 1 0 1 3 0 0 1 2 2 0 0 1 1 0 0 17 0 1845.0149 Q6P9C2;B2RAL9;Q99956;Q8N4A4 Q6P9C2 201 217 DUSP9 Dual specificity protein phosphatase;Dual specificity protein phosphatase 9 yes no 2 1.0326E-07 96.866 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1135 872 1169 3105;3106 4885;4886 4886 2 ASFVTEVLAHSGR ______________________________ ______________________________ M A S G R L 2 1 0 0 0 0 1 1 1 0 1 0 0 1 0 2 1 0 0 2 0 0 13 0 1372.7099 F5H3C1;B4DUQ3;B2R7C2;O43264 F5H3C1 2 14 ZW10 Centromere/kinetochore protein zw10 homolog yes no 2 0.00025161 84.507 3 1.3229 1.3382 NaN 1 Median 1.3229 1.3382 NaN 1 0 Median NaN NaN NaN 0 0 Median 12266000 4050500 8215300 12266000 4050500 8215300 0 0 0 1136 849 1170 3107;3108;3109 4887;4888;4889;4890 4889 4 ASGAGSEFQDQTR DALSLKELITEAQTKASGAGSEFQDQTRIR TKASGAGSEFQDQTRIRFMLETMLALKNND K A S T R I 2 1 0 1 0 2 1 2 0 0 0 0 0 1 0 2 1 0 0 0 0 0 13 0 1352.5957 Q5C9Z4 Q5C9Z4 532 544 NOM1 Nucleolar MIF4G domain-containing protein 1 yes yes 2 0.0001783 71.555 2 0.74143 0.78233 0.085724 2 Median 0.74143 0.78233 0.085724 2 0 Median NaN NaN NaN 0 0 Median 8079800 3948500 4131300 8079800 3948500 4131300 0 0 0 1137 1805 1171 3110;3111 4891;4892;4893;4894 4894 4 ASGFVFTR SQFTTFLSLIEIPLKASGFVFTRLDGSMAQ LIEIPLKASGFVFTRLDGSMAQKKRVESIQ K A S T R L 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 1 1 0 0 1 0 0 8 0 883.4552 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;H7C5K0 Q59GQ7 873 880 HLTF Helicase-like transcription factor yes no 2 0.0015581 107.9 2 0.39722 0.39844 NaN 1 Median 0.39722 0.39844 NaN 1 0 Median NaN NaN NaN 0 0 Median 35420000 30482000 4937200 35420000 30482000 4937200 0 0 0 1138 512 1172 3112;3113 4895;4896 4895 2 ASGGLPQFGDEYDFYR SFVKFALGSVVAVTKASGGLPQFGDEYDFY SGGLPQFGDEYDFYRSFPGFQAFCETQGDR K A S Y R S 1 1 0 2 0 1 1 3 0 0 1 0 0 2 1 1 0 0 2 0 0 0 16 0 1820.8006 Q01780;B4DKG8;B4DFE4;Q59G73;K7EJ37 Q01780 49 64 EXOSC10 Exosome component 10 yes no 2 1.1923E-05 86.772 2 2 0.831 0.84135 0.29776 2 Median 0.831 0.84135 0.29776 2 0 Median NaN NaN NaN 0 0 Median 53944000 20382000 33562000 38031000 20382000 17650000 15912000 0 15912000 1139 1676 1173 3114;3115;3116;3117 4897;4898;4899;4900 4898 4 ASGGSLQGHDAVLR LLMYLMDLTHLILDKASGGSLQGHDAVLRL KASGGSLQGHDAVLRLVEIRTVLEKLRPLD K A S L R L 2 1 0 1 0 1 0 3 1 0 2 0 0 0 0 2 0 0 0 1 0 0 14 0 1366.6953 Q8NEJ9;H0YJ17;G3V4G1 Q8NEJ9 75 88 NGDN Neuroguidin yes no 2;3 1.4135E-97 215.02 3 4 0.9301 0.76958 50.153 6 Median 0.34506 0.38904 74.99 2 0 Median 0.97041 0.7952 4.6346 4 0 Median 267430000 180680000 86748000 192140000 141260000 50880000 75283000 39416000 35868000 1140 1927 1174 3118;3119;3120;3121;3122;3123;3124 4901;4902;4903;4904;4905;4906;4907;4908;4909;4910;4911 4904 11 ASGLVPNVVVLVATVR GADIGMEKFFNIKCRASGLVPNVVVLVATV SGLVPNVVVLVATVRALKMHGGGPSVTAGV R A S V R A 2 1 1 0 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 6 0 0 16 0 1592.9614 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 665 680 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 7.0498E-05 81.92 2 1.9693 2.0277 8.303 2 Median 1.9693 2.0277 8.303 2 0 Median NaN NaN NaN 0 0 Median 10678000 4124800 6553400 10678000 4124800 6553400 0 0 0 1141 418 1175 3125;3126 4912;4913;4914;4915 4913 4 ASGNYATVISHNPETK CCLEEKPGDRGKLARASGNYATVISHNPET SGNYATVISHNPETKKTRVKLPSGSKKVIS R A S T K K 2 0 2 0 0 0 1 1 1 1 0 1 0 0 1 2 2 0 1 1 0 0 16 0 1687.8166 P62917;B4DVG7;E9PKZ0;G3V1A1 P62917 129 144 RPL8 60S ribosomal protein L8 yes no 2;3 5.7854E-81 222.55 6 4 0.80767 0.81883 8.685 9 Median 0.76359 0.92058 7.9164 5 0 Median 0.92793 0.80103 3.1219 4 0 Median 5672100000 3174200000 2497800000 5205500000 2934800000 2270700000 466590000 239410000 227170000 1142 1653 1176 3127;3128;3129;3130;3131;3132;3133;3134;3135;3136 4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931 4921 16 ASGNYATVISHNPETKK CCLEEKPGDRGKLARASGNYATVISHNPET GNYATVISHNPETKKTRVKLPSGSKKVISS R A S K K T 2 0 2 0 0 0 1 1 1 1 0 2 0 0 1 2 2 0 1 1 0 0 17 1 1815.9115 P62917;B4DVG7;E9PKZ0;G3V1A1 P62917 129 145 RPL8 60S ribosomal protein L8 yes no 3 3.1682E-07 88.551 2 1.0396 0.88276 4.3297 2 Median NaN NaN NaN 0 0 Median 1.0396 0.88276 4.3297 2 0 Median 23688000 11681000 12007000 0 0 0 23688000 11681000 12007000 1143 1653 1177 3137;3138 4932;4933;4934;4935 4934 4 ASGPGLNTTGVPASLPVEFTIDAK FKVKVLPTHDASKVKASGPGLNTTGVPASL GVPASLPVEFTIDAKDAGEGLLAVQITDPE K A S A K D 3 0 1 1 0 0 1 3 0 1 2 1 0 1 3 2 3 0 0 2 0 0 24 0 2341.2165 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1550 1573 FLNA;FLJ00119 Filamin-A yes no 2 6.5773E-09 56.599 2 1 1.255 1.2656 73.086 3 Median 1.2431 1.2557 1.1135 2 0 Median 5.564 4.4525 NaN 1 0 Median 43586000 16718000 26869000 34882000 15460000 19422000 8704000 1257500 7446500 1144 1504 1178 3139;3140;3141 4936;4937;4938;4939;4940 4937 5 ASGPPVSELITK VKKKARKSAGAAKRKASGPPVSELITKVVA KRKASGPPVSELITKVVAASKERSGVSLAA K A S T K V 1 0 0 0 0 0 1 1 0 1 1 1 0 0 2 2 1 0 0 1 0 0 12 0 1197.6605 Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16402;P16403 Q4VB24 35 46 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 4.3315E-48 194.49 5 1 0.91283 1.012 36.914 4 Median 0.97227 1.1641 16.961 3 0 Plateau 0.5889 0.53947 NaN 1 0 Median 20475000000 10418000000 10057000000 19086000000 9555300000 9530700000 1388900000 862730000 526190000 1145 656;1490 1179 3142;3143;3144;3145;3146;3147 4941;4942;4943;4944;4945;4946;4947;4948;4949;4950;4951;4952;4953;4954;4955;4956;4957;4958;4959;4960;4961;4962;4963;4964;4965;4966 4954 26 ASGSGGGSAALGPSGFGPSGGSGTK GPRAPRPPQPKKSKKASGSGGGSAALGPSG LGPSGFGPSGGSGTKLPKKATKTAPPALPT K A S T K L 3 0 0 0 0 0 0 10 0 0 1 1 0 1 2 6 1 0 0 0 0 0 25 0 2006.9294 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A0G2JHN8;A0A140T9I1;A0A140T9V2 A0A024RCR5 590 614 BRD2 Bromodomain-containing protein 2 yes no 2 2.4298E-42 143.28 3 1 1.2192 0.99432 NaN 1 Median NaN NaN NaN 0 0 Median 1.2192 0.99432 NaN 1 0 Median 38573000 35559000 3013100 32802000 32802000 0 5770300 2757200 3013100 1146 367 1180 3148;3149;3150;3151 4967;4968;4969;4970 4968 4 ASGTGTCLNLGSK A S S K 1 0 1 0 1 0 0 3 0 0 2 1 0 0 0 2 2 0 0 0 0 0 13 0 1264.6082 REV__H0Y9H7 yes no 2 0.00035282 63.076 1 0.7773 0.88291 NaN 1 Median 0.7773 0.88291 NaN 1 0 Median NaN NaN NaN 0 0 Median 142620000 86442000 56176000 142620000 86442000 56176000 0 0 0 + 1147 2155 1181 3152 4971 4971 1 ASHLLETLLCK VVNKLGDPQNRIATKASHLLETLLCKHPNM IATKASHLLETLLCKHPNMKGVVSGEVERL K A S C K H 1 0 0 0 1 0 1 0 1 0 4 1 0 0 0 1 1 0 0 0 0 0 11 0 1283.6908 B2R5U7;Q03701 B2R5U7 402 412 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.033929 26.412 1 0.94103 0.98301 NaN 1 Median 0.94103 0.98301 NaN 1 0 Median NaN NaN NaN 0 0 Median 16733000 8293800 8439100 16733000 8293800 8439100 0 0 0 1148 836;1683 1182 3153 4972 4972 1 ASHNNTQIQVVSASNEPLAFASCGTEGFR WAGKKFEEIPIAHIKASHNNTQIQVVSASN NEPLAFASCGTEGFRNAKKGTGIAAQTAGI K A S F R N 4 1 3 0 1 2 2 2 1 1 1 0 0 2 1 4 2 0 0 2 0 0 29 0 3091.4418 Q53GJ8;Q53FX9;P82912 Q53GJ8 90 118 MRPS11 28S ribosomal protein S11, mitochondrial yes no 3 0.00038235 28.365 1 1.3984 1.2028 NaN 1 Median NaN NaN NaN 0 0 Median 1.3984 1.2028 NaN 1 0 Median 2783100 1145600 1637500 0 0 0 2783100 1145600 1637500 1149 1669 1183 3154 4973;4974;4975 4973 3 ASINMLR RLRQIFNGTFVKLNKASINMLRIVEPYIAW GTFVKLNKASINMLRIVEPYIAWGYPNLKS K A S L R I 1 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 7 0 803.43236 A0A024R814;P18124;A8MUD9;C9JIJ5 A0A024R814 139 145 RPL7 60S ribosomal protein L7 yes no 2 0.0064223 98.807 5 1 2.2901 2.6139 84.609 3 Median 2.2901 2.6139 84.609 3 0 Median NaN NaN NaN 0 0 Median 452510000 263120000 189390000 449070000 259680000 189390000 3440000 3440000 0 1150 240 1184;1185 3155;3156;3157;3158;3159;3160 4976;4977;4978;4979;4980;4981;4982;4983 4981 180 8 ASITALEAK VKLQEMEGTVKSKYKASITALEAKIAQLEE VKSKYKASITALEAKIAQLEEQLDNETKER K A S A K I 3 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 9 0 902.5073 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1807 1815 MYH9;FLJ00279 Myosin-9 yes no 2 0.0021086 76.679 3 2 2.1553 2.0605 10.814 4 Median 1.6622 1.8817 5.2174 2 0 Median 2.7744 2.2411 4.2543 2 0 Median 394240000 111260000 282990000 378200000 107190000 271010000 16049000 4069800 11979000 1151 81 1186 3161;3162;3163;3164;3165 4984;4985;4986;4987;4988;4989;4990 4984 7 ASITPGTILIILTGR SHGKKPFSQHVRKLRASITPGTILIILTGR ASITPGTILIILTGRHRGKRVVFLKQLASG R A S G R H 1 1 0 0 0 0 0 2 0 4 2 0 0 0 1 1 3 0 0 0 0 0 15 0 1524.9239 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3;F8VZ45;U3KQR5;F8VR69 Q8TBK5 142 156 RPL6 60S ribosomal protein L6 yes no 2 1.3115E-47 183.37 2 1 0.8981 1.0648 NaN 1 Median 0.8981 1.0648 NaN 1 0 Median NaN NaN NaN 0 0 Median 776030000 510480000 265550000 558530000 292980000 265550000 217500000 217500000 0 1152 342 1187 3166;3167;3168 4991;4992;4993;4994;4995 4991 5 ASLCISTK MIEKLGGKLTGTANKASLCISTKKEVEKMN LTGTANKASLCISTKKEVEKMNKKMEEVKE K A S T K K 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 8 0 878.45315 A0A024R3T8;P09874;B4E0E1 A0A024R3T8 426 433 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.0038362 95.531 2 1 0.66644 0.74706 14.181 3 Median 0.65514 0.73337 2.6143 2 0 Median 1.1777 0.9356 NaN 1 0 Median 177460000 102160000 75302000 167380000 97539000 69842000 10077000 4617700 5459500 1153 139 1188 3169;3170;3171 4996;4997;4998;4999;5000 4998 5 ASLEAAIADAEQR ISRLQAEIEGLKGQRASLEAAIADAEQRGE QRASLEAAIADAEQRGELAIKDANAKLSEL R A S Q R G 5 1 0 1 0 1 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1343.6681 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 329 341 KRT8 Keratin, type II cytoskeletal 8 yes no 2 3.7855E-30 166.69 2 2 1.4159 1.4315 16.382 4 Median 1.0641 1.2536 1.5357 2 0 Median 1.9133 1.6602 3.7271 2 0 Median 1321200000 612800000 708430000 1171400000 560540000 610840000 149840000 52256000 97587000 + 1154 1156 1189 3172;3173;3174;3175 5001;5002;5003;5004;5005;5006;5007;5008 5001 8 ASLEAAIADAEQRGELAIK ISRLQAEIEGLKGQRASLEAAIADAEQRGE AAIADAEQRGELAIKDANAKLSELEAALQR R A S I K D 6 1 0 1 0 1 3 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 19 1 1955.0324 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 329 347 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 0.0076605 30.905 2 2.1133 1.7986 0.91887 2 Median NaN NaN NaN 0 0 Median 2.1133 1.7986 0.91887 2 0 Median 25205000 8039000 17166000 0 0 0 25205000 8039000 17166000 + 1155 1156 1190 3176;3177 5009;5010 5009 2 ASLEDAPVDDLTR AERSCTPSPDQISHRASLEDAPVDDLTRKF HRASLEDAPVDDLTRKFTYLGSQDRARPPS R A S T R K 2 1 0 3 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 13 0 1400.6783 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 283 295 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 4.3433E-29 147.91 2 1.38 1.5114 NaN 1 Median 1.38 1.5114 NaN 1 0 Median NaN NaN NaN 0 0 Median 48851000 13360000 35491000 48851000 13360000 35491000 0 0 0 1156 1873 1191 3178;3179 5011;5012;5013 5011 3 ASLEGNLAETENR MQALEIELQSQLSMKASLEGNLAETENRYC MKASLEGNLAETENRYCVQLSQIQGLIGSV K A S N R Y 2 1 2 0 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1402.6688 CON__Q04695;Q04695;F5GWP8;Q14666 CON__Q04695 322 334 KRT17 Keratin, type I cytoskeletal 17 yes no 2 6.4398E-05 92.112 1 1 0.61259 0.51021 NaN 1 Median NaN NaN NaN 0 0 Median 0.61259 0.51021 NaN 1 0 Median 31518000 28564000 2954000 24505000 24505000 0 7013800 4059700 2954000 + 1157 1168 1192 3180;3181 5014;5015 5014 2 ASLENSLEETK MQNLEIELQSQLSMKASLENSLEETKGRYC LSMKASLENSLEETKGRYCMQLAQIQEMIG K A S T K G 1 0 1 0 0 0 3 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 11 0 1219.5932 CON__P02533;P02533;A0A024R1X6;Q13092;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779;P08779;Q16195;K7ENW6 CON__P02533 353 363 KRT14;K14;KRT16;keratin Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 1.1208E-51 182.39 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157280000 157280000 0 138790000 138790000 0 18492000 18492000 0 + 1158 1150;1159 1193 3182;3183 5016;5017 5016 2 ASLENSLR VQSLEIDLDSMRNLKASLENSLREVEARYA DSMRNLKASLENSLREVEARYALQMEQLNG K A S L R E 1 1 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 8 0 888.46649 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__H-INV:HIT000015463 F8VZY9 318 325 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.040852 47.082 1 0.85431 0.95025 NaN 1 Median 0.85431 0.95025 NaN 1 0 Median NaN NaN NaN 0 0 Median 43397000 22861000 20536000 43397000 22861000 20536000 0 0 0 1159 316 1194 3184 5018 5018 1 ASLGPLQSK KELEGLPPGAKVTIRASLGPLQSKLPTAPF AKVTIRASLGPLQSKLPTAPFGCAPGTSFL R A S S K L 1 0 0 0 0 1 0 1 0 0 2 1 0 0 1 2 0 0 0 0 0 0 9 0 899.50763 Q8ND82;Q9UJJ2 Q8ND82 514 522 ZNF280C Zinc finger protein 280C yes no 2 0.012691 57.249 1 1 1.1414 1.0654 24.918 2 Median 0.81301 0.8933 NaN 1 0 Median 1.6025 1.2707 NaN 1 0 Median 46283000 27452000 18830000 41931000 25757000 16174000 4351400 1695200 2656200 1160 1924 1195 3185;3186 5019;5020 5019 2 ASLIEEDEPAEK LEAFIQNLNLAKYTKASLIEEDEPAEKENS YTKASLIEEDEPAEKENSSRKEVKIPKINN K A S E K E 2 0 0 1 0 0 4 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 12 0 1329.63 B2R5U7 B2R5U7 99 110 yes yes 2 1.8475E-12 125.74 2 2 0.99829 0.93921 14.263 4 Median 0.93435 1.0528 7.9331 2 0 Median 1.0496 0.84255 7.1479 2 0 Median 237490000 115160000 122330000 206810000 100920000 105890000 30682000 14234000 16447000 1161 836 1196 3187;3188;3189;3190 5021;5022;5023;5024;5025;5026;5027 5023 7 ASLLDDYQLPEILR RVQPGHCYHLYNGLRASLLDDYQLPEILRT RASLLDDYQLPEILRTPLEELCLQIKNALD R A S L R T 1 1 0 2 0 1 1 0 0 1 4 0 0 0 1 1 0 0 1 0 0 0 14 0 1644.8723 H7C5F5;E7EWK3;B7Z8P5;Q9H2U1 H7C5F5 100 113 DHX36 ATP-dependent RNA helicase DHX36 yes no 2 0.00069613 68.069 1 1.2517 1.243 NaN 1 Median 1.2517 1.243 NaN 1 0 Median NaN NaN NaN 0 0 Median 8391400 4777400 3614000 8391400 4777400 3614000 0 0 0 1162 1104 1197 3191 5028 5028 0 ASLLQLTR EAGLQEAGEEDTRLKASLLQLTRELEELKE EEDTRLKASLLQLTRELEELKEIEADLERQ K A S T R E 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 8 0 900.53927 B4E086;K7EJH0;K7EMX1;K7EJV2;K7ESQ2 B4E086 42 49 SPC24 yes no 2 0.00045427 132.08 2 0.87312 0.90108 14.436 2 Median 0.87312 0.90108 14.436 2 0 Median NaN NaN NaN 0 0 Median 41274000 23343000 17931000 41274000 23343000 17931000 0 0 0 1163 1061 1198 3192;3193 5029;5030;5031;5032 5032 4 ASLLTDEEDVDMALDQR ASSLGINPHVLQIMKASLLTDEEDVDMALD LLTDEEDVDMALDQRFSRLPSKADTSQEIC K A S Q R F 2 1 0 4 0 1 2 0 0 0 3 0 1 0 0 1 1 0 0 1 0 0 17 0 1919.8782 P52948;H7C3P6;A0A024RCC4 P52948 996 1012 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.00022513 63.091 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1164 1603 1199 3194 5033 5033 1389 1 ASLNGADIYSGCCTLK AMVEFDSVQSAQRAKASLNGADIYSGCCTL SLNGADIYSGCCTLKIEYAKPTRLNVFKND K A S L K I 2 0 1 1 2 0 0 2 0 1 2 1 0 0 0 2 1 0 1 0 0 0 16 0 1728.7811 B2R959;Q6NTA2;P14866;M0QXS5;M0R1W6;B4DVF8;B4DPK8 B2R959 218 233 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 1.7104E-06 94.688 2 1 1.6296 1.7008 43.746 3 Plateau 1.4637 1.5255 15.379 2 0 Median 0.93612 0.73228 NaN 1 0 Median 39652000 19159000 20493000 35933000 17125000 18808000 3719000 2034000 1684900 1165 865 1200 3195;3196;3197 5034;5035;5036;5037 5035 3 ASLNPSDTPPSVVNEDFLHDLK QNTLGVNVEHKTTSKASLNPSDTPPSVVNE TPPSVVNEDFLHDLKETNISYSQEADDRVF K A S L K E 1 0 2 3 0 0 1 0 1 0 3 1 0 1 3 3 1 0 0 2 0 0 22 0 2394.1703 A0A1B0GWA2;B7Z3Q4;O00116;B7ZAC5;Q53SG6 A0A1B0GWA2 62 83 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 3 0.013126 20.757 1 1.1182 1.1292 NaN 1 Median 1.1182 1.1292 NaN 1 0 Median NaN NaN NaN 0 0 Median 13231000 6319200 6912000 13231000 6319200 6912000 0 0 0 1166 635 1201 3198 5038;5039 5039 2 ASLPCSQEEATGGAK AVPSDLHLPEVSLDRASLPCSQEEATGGAK ASLPCSQEEATGGAKDTRMVHQTRASLRSV R A S A K D 3 0 0 0 1 1 2 2 0 0 1 1 0 0 1 2 1 0 0 0 0 0 15 0 1504.6828 A0PJ70;A8K9K0;Q8TF76 A0PJ70 215 229 GSG2 Serine/threonine-protein kinase haspin yes no 2 0.0084689 35.677 2 0.98347 0.99697 1.3804 2 Median 0.98347 0.99697 1.3804 2 0 Median NaN NaN NaN 0 0 Median 19162000 9007600 10155000 19162000 9007600 10155000 0 0 0 1167 646 1202 3199;3200 5040;5041 5041 2 ASLPLVLYIDR PLHPIPNRPVLTRARASLPLVLYIDRFLGG TRARASLPLVLYIDRFLGGVFSKRRIPKRT R A S D R F 1 1 0 1 0 0 0 0 0 1 3 0 0 0 1 1 0 0 1 1 0 0 11 0 1258.7285 B7ZL72;E9PLV1;Q9NQV6 B7ZL72 120 130 PRDM10 PR domain zinc finger protein 10 yes no 2 0.043067 44.309 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1168 1113 1203 3201 5042 5042 1 ASLSLIEK KIEALQNHENESVYKASLSLIEKYFSVEEE ENESVYKASLSLIEKYFSVEEEEDQNVVPE K A S E K Y 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 8 0 859.50148 Q7Z726;A8K7D9;P52292 Q7Z726 487 494 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.033338 50.04 1 1.1065 1.2463 NaN 1 Median 1.1065 1.2463 NaN 1 0 Median NaN NaN NaN 0 0 Median 58723000 28714000 30009000 58723000 28714000 30009000 0 0 0 1169 769 1204 3202 5043 5043 1 ASLVSEEEEDEEEDK PEVMVVESDLSDDGKASLVSEEEEDEEEDK ASLVSEEEEDEEEDKATPRRSRSRRSSIGL K A S D K A 1 0 0 2 0 0 7 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 15 0 1736.7112 A8K8X5;A0A024RA51;Q96GN5;C9JFL7;C9J8L0;C9IZR6 A8K8X5 113 127 CDCA7L Cell division cycle-associated 7-like protein yes no 2 1.0076E-06 93.623 3 1 0.80678 0.73817 45.609 2 Median 0.5278 0.53468 NaN 1 0 Median 1.2332 1.0191 NaN 1 0 Median 12905000 9739800 3165200 10573000 8578600 1994900 2331600 1161200 1170400 1170 295 1205 3203;3204;3205;3206 5044;5045;5046;5047;5048 5046 5 ASMDVENPDYSEEILK MHAEKLRKEKEEFEKASMDVENPDYSEEIL SMDVENPDYSEEILKGELAWIIYKNSVSII K A S L K G 1 0 1 2 0 0 3 0 0 1 1 1 1 0 1 2 0 0 1 1 0 0 16 0 1838.8244 B3KQ21;Q9NYH9;B3KX32;B4DSL9;B7Z9G4 B3KQ21 203 218 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 5.9309E-25 142.12 2 1.2338 1.3653 2.6503 2 Median 1.2338 1.3653 2.6503 2 0 Median NaN NaN NaN 0 0 Median 114350000 48504000 65846000 114350000 48504000 65846000 0 0 0 1171 925 1206 3207;3208 5049;5050;5051;5052 5050 758 4 ASMQPIQIAEGTGITTR DEEMKTGDPQETLRRASMQPIQIAEGTGIT MQPIQIAEGTGITTRQQRKRVSLEPHQGPG R A S T R Q 2 1 0 0 0 2 1 2 0 3 0 0 1 0 1 1 3 0 0 0 0 0 17 0 1772.9091 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1954 1970 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 2.5033E-45 166.62 2 2 0.81384 0.85424 19.054 4 Median 0.81384 0.86027 9.6555 2 0 Median 0.88215 0.7447 28.067 2 0 Median 77804000 43474000 34330000 65156000 36075000 29081000 12649000 7399400 5249200 1172 186;1747 1207;1208 3209;3210;3211;3212 5053;5054;5055;5056;5057;5058;5059;5060 5056 149 8 ASMSEFLESEDGEVEQQR TPITHILVCRPKRTKASMSEFLESEDGEVE SEFLESEDGEVEQQRTYSSGHNRLYFHSDT K A S Q R T 1 1 0 1 0 2 5 1 0 0 1 0 1 1 0 3 0 0 0 1 0 0 18 0 2069.8848 J3QQW9;Q15022;A8K1U9 J3QQW9 515 532 SUZ12 Polycomb protein SUZ12 yes no 2 4.8689E-08 89.629 2 1.3647 1.3807 NaN 1 Median 1.3647 1.3807 NaN 1 0 Median NaN NaN NaN 0 0 Median 19967000 7006200 12961000 19967000 7006200 12961000 0 0 0 1173 1336 1209 3213;3214 5061;5062;5063;5064;5065 5063 1008 5 ASNGDAWVEAHGK EVQKDIKNVPFKIVRASNGDAWVEAHGKLY VRASNGDAWVEAHGKLYSPSQIGAFVLMKM R A S G K L 3 0 1 1 0 0 1 2 1 0 0 1 0 0 0 1 0 1 0 1 0 0 13 0 1340.6109 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;D6RJI2 B7Z4V2 133 145 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 5.139E-06 101.93 2 2.4204 2.4405 NaN 1 Median 2.4204 2.4405 NaN 1 0 Median NaN NaN NaN 0 0 Median 16970000 1820000 15150000 16970000 1820000 15150000 0 0 0 1174 1092 1210 3215;3216 5066;5067;5068 5066 3 ASNLENSTYDLYTIPK MSYNPAENAVLLCTRASNLENSTYDLYTIP SNLENSTYDLYTIPKDADSQNPDAPEGKRS R A S P K D 1 0 2 1 0 0 1 0 0 1 2 1 0 0 1 2 2 0 2 0 0 0 16 0 1827.8891 P53621 P53621 383 398 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 5.0005E-05 83.617 1 1 1.1497 1.0268 36.711 2 Median 1.3168 1.3311 NaN 1 0 Median 1.0038 0.79202 NaN 1 0 Median 32691000 13052000 19638000 26734000 10042000 16691000 5956600 3010000 2946600 1175 1607 1211 3217;3218 5069;5070;5071 5069 3 ASNLLLNYK LEYIHEHEYVHGDIKASNLLLNYKNPDQVY VHGDIKASNLLLNYKNPDQVYLVDYGLAYR K A S Y K N 1 0 2 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 0 0 0 9 0 1034.576 A8K245;Q99986;H0YJ50 A8K245 180 188 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0046012 82.563 2 2 1.3861 1.0666 31.166 4 Linear 1.3782 1.4339 9.1805 2 0 Median 1.0413 0.84239 0.71367 2 0 Median 76730000 33301000 43429000 62268000 26656000 35612000 14462000 6644300 7817400 1176 707 1212 3219;3220;3221;3222 5072;5073;5074;5075 5075 4 ASNTAEVFFDGVR GGITHGPPEKKMGIKASNTAEVFFDGVRVP IKASNTAEVFFDGVRVPSENVLGEVGSGFK K A S V R V 2 1 1 1 0 0 1 1 0 0 0 0 0 2 0 1 1 0 0 2 0 0 13 0 1411.6732 Q53HR2;B4DEA8;P49748;B3KPA6;B3KPX1;A0A077H1I5 Q53HR2 304 316 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0024841 61.435 2 1.4308 1.49 NaN 1 Median 1.4308 1.49 NaN 1 0 Median NaN NaN NaN 0 0 Median 28874000 11317000 17557000 28874000 11317000 17557000 0 0 0 1177 965 1213 3223;3224 5076;5077;5078 5076 3 ASPITNDGEDEFVPSDGLDK DDDDDNNDLEELKVKASPITNDGEDEFVPS NDGEDEFVPSDGLDKDEYTFSPGKSKASPE K A S D K D 1 0 1 4 0 0 2 2 0 1 1 1 0 1 2 2 1 0 0 1 0 0 20 0 2104.9437 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1371 1390 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 2.761E-06 64.675 1 0.6747 0.69249 NaN 1 Median 0.6747 0.69249 NaN 1 0 Median NaN NaN NaN 0 0 Median 12993000 7511100 5481400 12993000 7511100 5481400 0 0 0 1178 1679 1214 3225 5079;5080 5080 2 ASPITNDGEDEFVPSDGLDKDEYTFSPGK DDDDDNNDLEELKVKASPITNDGEDEFVPS SDGLDKDEYTFSPGKSKASPEKSLHDKKSQ K A S G K S 1 0 1 5 0 0 3 3 0 1 1 2 0 2 3 3 2 0 1 1 0 0 29 1 3129.3938 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1371 1399 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 0.010205 22.081 2 1.1987 1.0213 0.73803 2 Median NaN NaN NaN 0 0 Median 1.1987 1.0213 0.73803 2 0 Median 18095000 6734900 11360000 0 0 0 18095000 6734900 11360000 1179 1679 1215 3226;3227 5081;5082;5083 5081 3 ASPLFSQHTAADK AKEELIFHCGFRRFRASPLFSQHTAADKHK FRASPLFSQHTAADKHKLQRFLTADMALVA R A S D K H 3 0 0 1 0 1 0 0 1 0 1 1 0 1 1 2 1 0 0 0 0 0 13 0 1371.6783 Q2NL82 Q2NL82 625 637 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 0.013183 38.58 1 1.1517 1.1702 NaN 1 Median 1.1517 1.1702 NaN 1 0 Median NaN NaN NaN 0 0 Median 10291000 5267700 5023700 10291000 5267700 5023700 0 0 0 1180 1776 1216 3228 5084 5084 1 ASPPSLEQPYLTHR AGMGDVVNIWAGQGKASPPSLEQPYLTHRL KASPPSLEQPYLTHRLSGPVHGLQFCPFED K A S H R L 1 1 0 0 0 1 1 0 1 0 2 0 0 0 3 2 1 0 1 0 0 0 14 0 1594.8104 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806 B0UZZ8 432 445 C6orf11;WDR46 WD repeat-containing protein 46 yes no 3 0.0027875 37.654 2 2 1.0921 1.06 6.0763 4 Median 0.8975 1.019 3.4302 2 0 Median 1.3568 1.1125 4.6819 2 0 Median 219090000 111530000 107570000 187910000 98013000 89901000 31181000 13515000 17666000 1181 809 1217 3229;3230;3231;3232 5085;5086;5087;5088;5089 5085 5 ASPSFEER EELTNTSKKALKQYRASPSFEERKQLGLPH KALKQYRASPSFEERKQLGLPHQRRGGNFK R A S E R K 1 1 0 0 0 0 2 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 8 0 921.41921 B3GQE6;Q53G15 B3GQE6 734 741 DDX27 yes no 2 0.0080668 80.229 1 1.0116 1.0935 NaN 1 Median 1.0116 1.0935 NaN 1 0 Median NaN NaN NaN 0 0 Median 48827000 22505000 26322000 48827000 22505000 26322000 0 0 0 1182 899 1218 3233 5090 5090 1 ASPSLERPEK ______________________________ ______________________________ M A S E K G 1 1 0 0 0 0 2 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 10 1 1112.5826 Q13601;B4DMS5 Q13601 2 11 KRR1 KRR1 small subunit processome component homolog yes no 2 0.00049639 86.898 1 1 1.518 1.5023 12.107 2 Median 1.4051 1.6366 NaN 1 0 Median 1.6401 1.3791 NaN 1 0 Median 47639000 19939000 27701000 43116000 18323000 24793000 4523700 1615800 2907900 1183 1717 1219 3234;3235 5091;5092 5091 2 ASPSPTDPVVPAVPIGPPPAGFR GHVMVNGPTTPIPVKASPSPTDPVVPAVPI VVPAVPIGPPPAGFRDILLREGPEGFARAV K A S F R D 3 1 0 1 0 0 0 2 0 1 0 0 0 1 8 2 1 0 0 3 0 0 23 0 2225.1845 A0A024R5C5;P11498 A0A024R5C5 520 542 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 8.6304E-06 54.524 2 1.6483 1.725 NaN 1 Median 1.6483 1.725 NaN 1 0 Median NaN NaN NaN 0 0 Median 19495000 5741600 13754000 19495000 5741600 13754000 0 0 0 1184 176 1220 3236;3237 5093;5094;5095 5095 3 ASQDPFPAAIILK GGEKSLNDLIEERYKASQDPFPAAIILKVA YKASQDPFPAAIILKVALNMARGLKYLHQE K A S L K V 3 0 0 1 0 1 0 0 0 2 1 1 0 1 2 1 0 0 0 0 0 0 13 0 1369.7606 V9HWH0;Q96KB5;E5RFX4 V9HWH0 133 145 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 2 0.000117 74.533 1 1 1.4232 1.2831 42.552 2 Median 1.6757 1.7335 NaN 1 0 Median 1.2088 0.94968 NaN 1 0 Median 28743000 11977000 16766000 24909000 9945300 14964000 3834000 2031700 1802300 1185 1975 1221 3238;3239 5096;5097 5096 2 ASQGSTLVHPFR INFLLGILYIATPNKASQGSTLVHPFRALG PNKASQGSTLVHPFRALGKNSELLVVSARE K A S F R A 1 1 0 0 0 1 0 1 1 0 1 0 0 1 1 2 1 0 0 1 0 0 12 0 1298.6731 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 628 639 NOP14 Nucleolar protein 14 yes no 2;3 1.833E-05 118.23 3 1 1.111 1.1769 10.527 4 Median 1.1071 1.1917 12.878 3 0 Median 1.3634 1.1623 NaN 1 0 Median 269510000 139460000 130050000 264950000 137700000 127250000 4555700 1763800 2791900 1186 790 1222 3240;3241;3242;3243 5098;5099;5100;5101;5102;5103;5104 5100 7 ASQPDLVDTPTSSK KESMTNEKTTKVSYRASQPDLVDTPTSSKP RASQPDLVDTPTSSKPQPKRSLRKADTEEE R A S S K P 1 0 0 2 0 1 0 0 0 0 1 1 0 0 2 3 2 0 0 1 0 0 14 0 1444.7046 P46013 P46013 1739 1752 MKI67 Antigen KI-67 yes yes 2 1.52E-14 133.05 2 2 2.3313 2.1903 29.856 4 Median 1.5033 1.6775 11.557 2 0 Median 3.417 2.7643 6.7518 2 0 Median 150150000 56877000 93278000 131090000 52737000 78350000 19068000 4140400 14928000 1187 1569 1223 3244;3245;3246;3247 5105;5106;5107;5108;5109;5110;5111;5112 5107 8 ASQPDLVDTPTSSKPQPK KESMTNEKTTKVSYRASQPDLVDTPTSSKP PDLVDTPTSSKPQPKRSLRKADTEEEFLAF R A S P K R 1 0 0 2 0 2 0 0 0 0 1 2 0 0 4 3 2 0 0 1 0 0 18 1 1894.9636 P46013 P46013 1739 1756 MKI67 Antigen KI-67 yes yes 2;3 1.0697E-12 91.858 4 2 1.8305 2.1495 21.773 6 Median 1.794 2.1058 4.6531 4 0 Median 3.7179 3.1632 2.0808 2 0 Median 1330000000 432570000 897450000 1078900000 379050000 699890000 251080000 53516000 197560000 1188 1569 1224 3248;3249;3250;3251;3252;3253 5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127 5122 15 ASQTLPQATMNHR RKRLEAEVKALQAKKASQTLPQATMNHRDI KKASQTLPQATMNHRDIARHQASSSVFSWQ K A S H R D 2 1 1 0 0 2 0 0 1 0 1 0 1 0 1 1 2 0 0 0 0 0 13 0 1453.7096 P49454 P49454 193 205 CENPF Centromere protein F yes yes 2 0.0163 43.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1189 1581 1225 3254 5128 5128 1361 1 ASREEILAQAK QAQMKDCMRELDDTRASREEILAQAKENEK DDTRASREEILAQAKENEKKLKSMEAEMIQ R A S A K E 3 1 0 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1214.6619 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1659 1669 MYH9;FLJ00279 Myosin-9 yes no 2 0.00041179 107.79 1 1 1.7269 2.0331 NaN 1 Median 1.7269 2.0331 NaN 1 0 Median NaN NaN NaN 0 0 Median 91426000 30798000 60628000 84913000 30798000 54115000 6513000 0 6513000 1190 81 1226 3255;3256 5129;5130;5131 5130 3 ASSAAGLTAAVVR HVEEFSPRAVYTSGKASSAAGLTAAVVRDE GKASSAAGLTAAVVRDEESHEFVIEAGALM K A S V R D 5 1 0 0 0 0 0 1 0 0 1 0 0 0 0 2 1 0 0 2 0 0 13 0 1172.6513 Q14566;Q4ZG57;B4DRF6 Q14566 423 435 MCM6 DNA replication licensing factor MCM6 yes no 2 7.3128E-05 93.258 2 2.0952 2.055 NaN 1 Median 2.0952 2.055 NaN 1 0 Median NaN NaN NaN 0 0 Median 19002000 4113700 14888000 19002000 4113700 14888000 0 0 0 1191 1734 1227 3257;3258 5132;5133;5134 5132 3 ASSAQSGGSSGGPAVPTVQR ______________________________ SGGSSGGPAVPTVQRGIIKMVLSGCAIIVR M A S Q R G 3 1 0 0 0 2 0 4 0 0 0 0 0 0 2 5 1 0 0 2 0 0 20 0 1799.8762 A0A140VK49;Q7KZF4;B4E299;I6TRR8 A0A140VK49 2 21 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 1.2276E-05 67.102 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6497100 0 6497100 6497100 0 6497100 0 0 0 1192 618 1228 3259;3260 5135;5136 5135 2 ASSASAPSSTPTGTTVVK HVTSNPVHAADSPAKASSASAPSSTPTGTT ASAPSSTPTGTTVVKVTPDLKPTEASSSAF K A S V K V 3 0 0 0 0 0 0 1 0 0 0 1 0 0 2 5 4 0 0 2 0 0 18 0 1647.8315 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1026 1043 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 1.4867E-14 109 3 0.83501 0.85793 NaN 1 Median 0.83501 0.85793 NaN 1 0 Median NaN NaN NaN 0 0 Median 21021000 14715000 6305900 21021000 14715000 6305900 0 0 0 1193 135 1229 3261;3262;3263 5137;5138;5139;5140 5140 4 ASSEGGTAAGAGLDSLHK RGLTARERFQNLDKKASSEGGTAAGAGLDS EGGTAAGAGLDSLHKNSVSQISVLSGGKAK K A S H K N 4 0 0 1 0 0 1 4 1 0 2 1 0 0 0 3 1 0 0 0 0 0 18 0 1627.7802 A4D275;O15143 A4D275 309 326 ARPC1B Actin-related protein 2/3 complex subunit 1B yes no 2 9.0799E-06 68.277 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8788600 0 8788600 8788600 0 8788600 0 0 0 1194 670 1230 3264;3265 5141;5142 5142 2 ASSEGTIPQVQR LSQKLKENHQSRKQKASSEGTIPQVQREEP KQKASSEGTIPQVQREEPAPEEEEPLLLQR K A S Q R E 1 1 0 0 0 2 1 1 0 1 0 0 0 0 1 2 1 0 0 1 0 0 12 0 1271.647 Q9BVJ6;B4E343 Q9BVJ6 478 489 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0012705 79.974 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85120000 0 85120000 77052000 0 77052000 8068100 0 8068100 1195 2008 1231 3266;3267;3268 5143;5144;5145 5144 3 ASSEGTIPQVQREEPAPEEEEPLLLQRPER LSQKLKENHQSRKQKASSEGTIPQVQREEP APEEEEPLLLQRPERVQTLEELEELGKEEC K A S E R V 2 3 0 0 0 3 8 1 0 1 3 0 0 0 5 2 1 0 0 1 0 0 30 2 3413.7063 Q9BVJ6;B4E343 Q9BVJ6 478 507 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 4 0.00039652 30.104 1 1.4948 1.7963 NaN 1 Median NaN NaN NaN 0 0 Median 1.4948 1.7963 NaN 1 0 Median 24871000 10703000 14168000 0 0 0 24871000 10703000 14168000 1196 2008 1232 3269 5146;5147 5147 2 ASSGLLYPLER FQGHSGAQCITCSYKASSGLLYPLERGFIY CSYKASSGLLYPLERGFIYVHKPPVHIRFD K A S E R G 1 1 0 0 0 0 1 1 0 0 3 0 0 0 1 2 0 0 1 0 0 0 11 0 1204.6452 A0A024R4Z6;Q08945 A0A024R4Z6 347 357 SSRP1 FACT complex subunit SSRP1 yes no 2 8.5874E-11 136.63 2 2 0.8092 0.83997 3.6931 4 Linear 0.704 0.83023 3.2849 2 0 Median 0.90428 0.78613 0.57723 2 0 Median 1612700000 920680000 692020000 1344700000 786340000 558340000 268020000 134340000 133680000 1197 167 1233 3270;3271;3272;3273 5148;5149;5150;5151;5152;5153;5154;5155;5156;5157 5155 10 ASSLISLLK VIILSLDRSDEDKEKASSLISLLKQEGIAT DEDKEKASSLISLLKQEGIATSDNFMQAFL K A S L K Q 1 0 0 0 0 0 0 0 0 1 3 1 0 0 0 3 0 0 0 0 0 0 9 0 930.57498 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89;E9PKF8 D3DQV9 600 608 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0054512 67.993 2 2.1242 2.2822 0.91018 2 Median 2.1242 2.2822 0.91018 2 0 Median NaN NaN NaN 0 0 Median 55687000 17237000 38450000 55687000 17237000 38450000 0 0 0 1198 1054 1234 3274;3275 5158;5159;5160;5161 5161 4 ASSQVNVEGQSR QEKAKEIYMTFLSSKASSQVNVEGQSRLNE SSKASSQVNVEGQSRLNEKILEEPHPLMFQ K A S S R L 1 1 1 0 0 2 1 1 0 0 0 0 0 0 0 3 0 0 0 2 0 0 12 0 1260.6058 O43665 O43665 94 105 RGS10 Regulator of G-protein signaling 10 yes yes 2 0.0029448 66.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4757600 4757600 0 4757600 4757600 0 0 0 0 1199 1387 1235 3276 5162 5162 1 ASSSDSEDSSEEEEEVQGPPAK KLQANGPVAKKAKKKASSSDSEDSSEEEEE DSSEEEEEVQGPPAKKAAVPAKRVGLPPGK K A S A K K 2 0 0 2 0 1 6 1 0 0 0 1 0 0 2 6 0 0 0 1 0 0 22 0 2292.9354 B2RAU8;A0A0A0MRM9;Q14978;S4R3C2 B2RAU8 82 103 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.00025445 56.599 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1200 468 1236 3277 5163 5163 1 ASSSLGLQDFDLLR VGEEKEAMNTRESGKASSSLGLQDFDLLRV KASSSLGLQDFDLLRVIGRGSYAKVLLVRL K A S L R V 1 1 0 2 0 1 0 1 0 0 4 0 0 1 0 3 0 0 0 0 0 0 14 0 1520.7835 B5BUK7;B2RCZ4;P41743 B5BUK7 236 249 PRKCI Protein kinase C;Protein kinase C iota type yes no 2 1.5139E-14 133.07 2 1.5408 1.5713 2.9066 2 Median 1.5408 1.5713 2.9066 2 0 Median NaN NaN NaN 0 0 Median 23682000 9555300 14127000 23682000 9555300 14127000 0 0 0 1201 884 1237 3278;3279 5164;5165;5166;5167;5168 5166 5 ASTAASSALGFSK KNLSDACKPLKKRNRASTAASSALGFSKSS NRASTAASSALGFSKSSSPSASLTENEVSD R A S S K S 4 0 0 0 0 0 0 1 0 0 1 1 0 1 0 4 1 0 0 0 0 0 13 0 1196.6037 O96028;Q05CW4;H0Y9U6 O96028 603 615 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 8.5218E-14 134.3 2 1 1.3808 1.2542 24.576 3 Median 1.0793 1.2184 34.675 2 0 Median 1.5696 1.2542 NaN 1 0 Median 154270000 76858000 77413000 145220000 73102000 72114000 9054800 3755900 5298900 1202 1435 1238 3280;3281;3282 5169;5170;5171;5172;5173;5174 5171 6 ASTEGVAIQGQQGTR KNPPKNVQQHEKVQKASTEGVAIQGQQGTR ASTEGVAIQGQQGTRLLPEQLIKEAFILSD K A S T R L 2 1 0 0 0 3 1 3 0 1 0 0 0 0 0 1 2 0 0 1 0 0 15 0 1501.7485 Q92621 Q92621 70 84 NUP205 Nuclear pore complex protein Nup205 yes yes 2 2.5107E-09 112.64 2 1 1.2613 1.3315 26.042 3 Median 1.302 1.3693 3.9607 2 0 Median 0.98363 0.87445 NaN 1 0 Median 37850000 15218000 22632000 35914000 14178000 21736000 1936600 1040100 896470 1203 1950 1239 3283;3284;3285 5175;5176;5177;5178 5175 4 ASTNAMLISAGLPPLK DREREREKEKEKELRASTNAMLISAGLPPL STNAMLISAGLPPLKASHSAHSTHSAHSTH R A S L K A 3 0 1 0 0 0 0 1 0 1 3 1 1 0 2 2 1 0 0 0 0 0 16 0 1582.8753 O43143 O43143 63 78 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 8.6099E-06 86.288 2 1 1.5545 1.683 52.081 3 Plateau 1.5488 1.6755 0.63595 2 0 Median 0.83348 0.67981 NaN 1 0 Median 80007000 32033000 47974000 74146000 29183000 44963000 5861200 2850000 3011200 1204 1379 1240 3286;3287;3288 5179;5180;5181;5182 5180 1043 4 ASVILAGLGFTPK YAKLEEIEADKAPARASVILAGLGFTPKMQ ARASVILAGLGFTPKMQQQPTREFSGGWRM R A S P K M 2 0 0 0 0 0 0 2 0 1 2 1 0 1 1 1 1 0 0 1 0 0 13 0 1272.7442 B4DRU9;A0A0S2Z5L1;Q9NUQ8 B4DRU9 266 278 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 0.00024023 88.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5383100 0 5383100 5383100 0 5383100 0 0 0 1205 583 1241 3289 5183 5183 1 ASVITQVFHVPLEER QEPAGAWGNKIRPIKASVITQVFHVPLEER ASVITQVFHVPLEERKYKDMNQFGEGEQAK K A S E R K 1 1 0 0 0 1 2 0 1 1 1 0 0 1 1 1 1 0 0 3 0 0 15 0 1723.9257 A0A024R4E5;Q00341;B2R5V9;C9J5E5;C9JIZ1;C9JZI8;C9JHS7;C9JHZ8;C9JES8;C9JT62;C9JK79 A0A024R4E5 73 87 HDLBP Vigilin yes no 3 4.4899E-06 89.541 1 2 1.3494 1.1389 29.972 3 Median 1.797 1.8231 NaN 1 0 Median 1.2895 1.0907 6.11 2 0 Median 26368000 10636000 15732000 20287000 7971100 12316000 6080300 2664400 3415900 1206 154 1242 3290;3291;3292 5184;5185;5186;5187;5188;5189 5185 6 ASVPSVQIQGQR QHSSTGPPPLLLAPRASVPSVQIQGQRIIQ APRASVPSVQIQGQRIIQQGLIRVANVPNT R A S Q R I 1 1 0 0 0 3 0 1 0 1 0 0 0 0 1 2 0 0 0 2 0 0 12 0 1268.6837 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 274 285 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.00074526 66.435 1 1 2.8477 2.5985 78.661 2 Median 1.4988 1.4899 NaN 1 0 Median 5.4106 4.532 NaN 1 0 Median 19419000 6726700 12692000 16244000 6155300 10088000 3175100 571330 2603700 1207 229 1243 3293;3294 5190;5191;5192 5190 3 ASVQGVPLESSNNDIFLPVK KENNKSFQSDDSSLRASVQGVPLESSNNDI VPLESSNNDIFLPVKQKIQCQQEKKAPLHN R A S V K Q 1 0 2 1 0 1 1 1 0 1 2 1 0 1 2 3 0 0 0 3 0 0 20 0 2113.1055 Q6P0N0;G5E9K5 Q6P0N0 182 201 MIS18BP1 Mis18-binding protein 1 yes no 2 6.6775E-06 53.001 2 2 0.97602 0.8826 29.342 4 Median 0.68202 0.70159 8.1921 2 0 Median 1.4196 1.1415 12.111 2 0 Median 46912000 22753000 24159000 23587000 13152000 10435000 23325000 9601200 13724000 1208 1849 1244 3295;3296;3297;3298 5193;5194;5195;5196;5197;5198 5195 5 ASVSITFDNSDK LQDLVYKNGQAGITKASVSITFDNSDKKQS ITKASVSITFDNSDKKQSPLGFEVHDEITV K A S D K K 1 0 1 2 0 0 0 0 0 1 0 1 0 1 0 3 1 0 0 1 0 0 12 0 1282.6041 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q6P712 A0A024R158 77 88 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 7.0704E-06 109.42 2 2 1.1761 1.1606 24.336 4 Median 0.81159 0.93946 1.2545 2 0 Median 1.7296 1.4315 1.0276 2 0 Median 543090000 281900000 261190000 463270000 252370000 210900000 79825000 29532000 50293000 1209 69 1245 3299;3300;3301;3302 5199;5200;5201;5202;5203;5204;5205;5206 5201 8 ASVSITFDNSDKK LQDLVYKNGQAGITKASVSITFDNSDKKQS TKASVSITFDNSDKKQSPLGFEVHDEITVT K A S K K Q 1 0 1 2 0 0 0 0 0 1 0 2 0 1 0 3 1 0 0 1 0 0 13 1 1410.6991 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q6P712 A0A024R158 77 89 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 2.4928E-09 123.79 2 1 0.88575 1.0458 24.537 3 Median 0.86314 1.0099 4.9425 2 0 Median 1.8119 1.538 NaN 1 0 Median 136520000 67045000 69475000 112510000 58251000 54261000 24008000 8794000 15214000 1210 69 1246 3303;3304;3305 5207;5208;5209;5210;5211 5209 5 ASVVTLPVYLNFTR LTQLRWVKQTNTEKKASVVTLPVYLNFTRA KASVVTLPVYLNFTRADLIFTVDFEIATKE K A S T R A 1 1 1 0 0 0 0 0 0 0 2 0 0 1 1 1 2 0 1 3 0 0 14 0 1578.877 Q14204 Q14204 4602 4615 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00029175 81.525 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10948000 0 10948000 10948000 0 10948000 0 0 0 1211 1729 1247 3306 5212 5212 1 ASWSSLSMDEK KHLSASQKALKEKEKASWSSLSMDEKVELY EKEKASWSSLSMDEKVELYRIKFKESFAEM K A S E K V 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 4 0 1 0 0 0 0 11 0 1239.5442 P13073;Q86WV2;H3BPG0;H3BN72;H3BNV9 P13073 68 78 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2 0.0022123 57.785 1 1.2505 1.2483 NaN 1 Median 1.2505 1.2483 NaN 1 0 Median NaN NaN NaN 0 0 Median 14312000 6845400 7467000 14312000 6845400 7467000 0 0 0 1212 1477 1248 3307 5213;5214 5214 1224 2 ASYAEQLSMLK VAEQERTAQQLRAEKASYAEQLSMLKKAHG RAEKASYAEQLSMLKKAHGLLAEENRGLGE K A S L K K 2 0 0 0 0 1 1 0 0 0 2 1 1 0 0 2 0 0 1 0 0 0 11 0 1239.6169 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1431 1441 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0005352 70.056 1 1.0576 1.1014 NaN 1 Median 1.0576 1.1014 NaN 1 0 Median NaN NaN NaN 0 0 Median 11617000 5824000 5793100 11617000 5824000 5793100 0 0 0 1213 186;1747 1249 3308 5215 5215 150 1 ASYDDPYKK STPPPYERTRLSPPRASYDDPYKKAVAMSK RLSPPRASYDDPYKKAVAMSKRYGSDRRLA R A S K K A 1 0 0 2 0 0 0 0 0 0 0 2 0 0 1 1 0 0 2 0 0 0 9 1 1085.5029 A0A0S2Z4Z0;Q96PK6;Q59GV2;B4DNG4 A0A0S2Z4Z0 586 594 RBM14 RNA-binding protein 14 yes no 2 0.0034495 77.318 1 1 1.127 1.1573 56.368 2 Median 1.462 1.724 NaN 1 0 Median 0.86882 0.77683 NaN 1 0 Median 16625000 6876600 9748100 14770000 5840200 8929600 1854900 1036400 818470 1214 571 1250 3309;3310 5216;5217;5218 5216 3 ASYVAPLTAQPATYR FFGRDRSPLRRSPPRASYVAPLTAQPATYR ASYVAPLTAQPATYRAQPSVSLGAAYRAQP R A S Y R A 4 1 0 0 0 1 0 0 0 0 1 0 0 0 2 1 2 0 2 1 0 0 15 0 1607.8308 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 224 238 RBM14 RNA-binding protein 14 yes no 2 2.3703E-07 107.85 2 2 1.115 1.0801 37.313 4 Median 1.3245 1.4739 2.4224 2 0 Median 0.94811 0.7745 5.4978 2 0 Median 159470000 75481000 83990000 131050000 60984000 70062000 28425000 14498000 13928000 1215 571 1251 3311;3312;3313;3314 5219;5220;5221;5222;5223;5224;5225 5220 7 ATAAPAGAPPQPQDLEFTK SFSRFYSLKVAPKVKATAAPAGAPPQPQDL PAGAPPQPQDLEFTKLPNGLVIASLENYSP K A T T K L 5 0 0 1 0 2 1 1 0 0 1 1 0 1 4 0 2 0 0 0 0 0 19 0 1908.9581 H3BSJ9;H3BRG4;P22695;H3BUE4;H3BUI9 H3BSJ9 24 42 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 7.2516E-06 77.185 3 1 1.6814 1.4894 35.489 2 Median 1.9226 1.9142 NaN 1 0 Median 1.4705 1.1588 NaN 1 0 Median 20961000 4676700 16284000 17715000 3292000 14423000 3246400 1384800 1861600 1216 1305 1252 3315;3316;3317;3318 5226;5227;5228;5229;5230 5227 5 ATAEALLALPVLR RSVLVMMLEPDPKLRATAEALLALPVLRQP LRATAEALLALPVLRQPRAWGVLWCMAAEA R A T L R Q 4 1 0 0 0 0 1 0 0 0 4 0 0 0 1 0 1 0 0 1 0 0 13 0 1336.8078 A6NHV6;Q0IJ49;B4DZM6;Q99640 A6NHV6 339 351 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase yes no 2 1.8952E-13 129.85 2 1.2696 1.2717 0.37764 2 Median 1.2696 1.2717 0.37764 2 0 Median NaN NaN NaN 0 0 Median 18108000 8008000 10100000 18108000 8008000 10100000 0 0 0 1217 685 1253 3319;3320 5231;5232 5231 2 ATAENNFEVELNYGLR ETDRTFSSESTLAQKATAENNFEVELNYGL TAENNFEVELNYGLRRWNGRRLRTYGKAPF K A T L R R 2 1 3 0 0 0 3 1 0 0 2 0 0 1 0 0 1 0 1 1 0 0 16 0 1838.8799 Q9NSI6 Q9NSI6 2079 2094 BRWD1 Bromodomain and WD repeat-containing protein 1 yes yes 2 0.002537 40.475 2 1.8395 1.5927 7.7438 2 Median NaN NaN NaN 0 0 Median 1.8395 1.5927 7.7438 2 0 Median 6074600 2034200 4040400 0 0 0 6074600 2034200 4040400 1218 2068 1254 3321;3322 5233;5234 5234 2 ATAGDTHLGGEDFDNR DVSILTIDDGIFEVKATAGDTHLGGEDFDN TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK K A T N R L 2 1 1 3 0 0 1 3 1 0 1 0 0 1 0 0 2 0 0 0 0 0 16 0 1674.7234 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4;Q9UQC1;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5;P48741 A8K5I0 221 236 HEL-S-103;HSPA1B;HSPA1A;HSP70-1;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2;3 1.6044E-24 166.7 4 4 0.91202 0.88756 6.631 8 Median 0.77024 0.88756 9.3098 4 0 Median 1.048 0.88628 3.931 4 0 Median 563770000 294890000 268880000 501900000 265240000 236670000 61868000 29655000 32213000 1219 533;845 1255 3323;3324;3325;3326;3327;3328;3329;3330 5235;5236;5237;5238;5239;5240;5241;5242;5243;5244;5245;5246;5247;5248 5238 14 ATALPLLK GVTNDQVDPSVDVLKATALPLLKQFGIDGE PSVDVLKATALPLLKQFGIDGESFELKIVR K A T L K Q 2 0 0 0 0 0 0 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 8 0 825.53239 Q9Y2P8 Q9Y2P8 134 141 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 0.022274 57.281 2 0.97788 1.0829 6.2873 2 Median 0.97788 1.0829 6.2873 2 0 Median NaN NaN NaN 0 0 Median 107710000 48682000 59028000 107710000 48682000 59028000 0 0 0 1220 2125 1256 3331;3332 5249;5250;5251 5251 3 ATAPVPTVGEGYGYGHESELSQASAAAR ASTSYYGRDRSPLRRATAPVPTVGEGYGYG YGHESELSQASAAARNSLYDMARYEREQYA R A T A R N 6 1 0 0 0 1 3 4 1 0 1 0 0 0 2 3 2 0 2 2 0 0 28 0 2775.31 A8K9U0;Q9BWF3;E9PB51 A8K9U0 314 341 RBM4 RNA-binding protein 4 yes no 3 1.005E-10 55.986 2 2 1.0067 0.9519 26.903 4 Median 1.1706 1.2244 16.918 2 0 Median 0.918 0.79697 6.4411 2 0 Median 54628000 26926000 27702000 45033000 22553000 22480000 9594900 4373300 5221600 1221 788 1257 3333;3334;3335;3336 5252;5253;5254;5255;5256;5257;5258 5254 7 ATATHTDVLK RLAELLTQQHGLQCRATATHTDVLKDGFVF GLQCRATATHTDVLKDGFVFRIRVAYQREP R A T L K D 2 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 3 0 0 1 0 0 10 0 1055.5611 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 779 788 NOL6 Nucleolar protein 6 yes no 2;3 3.1062E-30 209.21 3 2 1.1546 1.2024 4.6236 5 Median 1.1054 1.2281 4.18 3 0 Plateau 1.5162 1.2253 6.2076 2 0 Median 180560000 85760000 94799000 164410000 79115000 85294000 16150000 6644600 9505000 1222 2038 1258 3337;3338;3339;3340;3341 5259;5260;5261;5262;5263;5264;5265;5266 5263 8 ATAVMPDGQFK SSGNAKIGHPAPNFKATAVMPDGQFKDISL PNFKATAVMPDGQFKDISLSDYKGKYVVFF K A T F K D 2 0 0 1 0 1 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 11 0 1163.5645 Q06830;A0A0A0MSI0;B2R4P2 Q06830 17 27 PRDX1 Peroxiredoxin-1 yes no 2 1.3632E-05 100.02 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121290000 0 121290000 121290000 0 121290000 0 0 0 1223 1690 1259;1260 3342;3343;3344 5267;5268;5269 5267 1508 3 ATCAPQHGAPGPGPADASK SLHETSSVFVDSLTKATCAPQHGAPGPGPA PQHGAPGPGPADASKVVAKGLGLSKAYVGQ K A T S K V 5 0 0 1 1 1 0 3 1 0 0 1 0 0 4 1 1 0 0 0 0 0 19 0 1788.8213 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2541 2559 FLNA;FLJ00119 Filamin-A yes no 2;3 1.5733E-12 90.22 2 1 1.4844 1.4818 71.501 3 Median 1.1694 1.1704 33.358 2 0 Median 4.8127 3.7677 NaN 1 0 Median 24599000 9533900 15065000 21238000 8994600 12243000 3361500 539300 2822200 1224 1504 1261 3345;3346;3347 5270;5271;5272;5273;5274 5274 5 ATCFAYGQTGSGK FTARPLVQTIFEGGKATCFAYGQTGSGKTH GKATCFAYGQTGSGKTHTMGGDLSGKAQNA K A T G K T 2 0 0 0 1 1 0 3 0 0 0 1 0 1 0 1 2 0 1 0 0 0 13 0 1346.5925 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1;Q5JR91 A8K3S3 342 354 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.0044617 61.344 2 1 1.2 0.95072 NaN 1 Median NaN NaN NaN 0 0 Median 1.2 0.95072 NaN 1 0 Median 17090000 8503800 8585900 12203000 6404100 5798700 4886800 2099700 2787200 1225 626 1262 3348;3349;3350 5275;5276;5277;5278 5276 4 ATDENPCGIDSECINR IFTADLSEIPRCNCKATDENPCGIDSECIN TDENPCGIDSECINRMLLYECHPTVCPAGG K A T N R M 1 1 2 2 2 0 2 1 0 2 0 0 0 0 1 1 1 0 0 0 0 0 16 0 1849.7571 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q96DQ7 B2RWP5 1630 1645 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.00015318 67.456 1 0.62496 0.62143 NaN 1 Median 0.62496 0.62143 NaN 1 0 Median NaN NaN NaN 0 0 Median 7625200 3778900 3846300 7625200 3778900 3846300 0 0 0 1226 898 1263 3351 5279;5280;5281 5280 3 ATDTLPASIPHVIAR IIVIHPGSTTLRIGRATDTLPASIPHVIAR ATDTLPASIPHVIARRHKQQGQPLYKDSWL R A T A R R 3 1 0 1 0 0 0 0 1 2 1 0 0 0 2 1 2 0 0 1 0 0 15 0 1560.8624 Q9H981 Q9H981 63 77 ACTR8 Actin-related protein 8 yes yes 3 0.001323 39.629 1 0.5029 0.55041 NaN 1 Median 0.5029 0.55041 NaN 1 0 Median NaN NaN NaN 0 0 Median 33294000 15148000 18146000 33294000 15148000 18146000 0 0 0 1227 2044 1264 3352 5282 5282 1 ATDTSQGELVHPK ______________________________ ______________________________ M A T P K A 1 0 0 1 0 1 1 1 1 0 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1381.6838 Q5SSJ5;X6RGJ2;B0QZK9;B0QZK8 Q5SSJ5 2 14 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 6.4277E-89 234.29 2 2 0.76521 0.73743 14.788 4 Median 0.72443 0.85353 7.0733 2 0 Median 0.77886 0.66732 0.52747 2 0 Median 917740000 537940000 379800000 734640000 435650000 298990000 183110000 102300000 80810000 1228 1817 1265 3353;3354;3355;3356 5283;5284;5285;5286;5287;5288;5289;5290 5286 8 ATEALCWAEGQR ANYFQEKFFPGHESRATEALCWAEGQRLFS ESRATEALCWAEGQRLFSAGLNGEIMEYDL R A T Q R L 3 1 0 0 1 1 2 1 0 0 1 0 0 0 0 0 1 1 0 0 0 0 12 0 1390.6299 Q969X6;H3BSH7;H3BPD7;I3L4T9;J3KSI1 Q969X6 62 73 CIRH1A Cirhin yes no 2 1.8516E-22 150.61 2 2 1.0883 1.0019 21.801 4 Median 0.81094 0.82344 4.7153 2 0 Median 1.4098 1.197 2.1174 2 0 Median 47937000 26450000 21487000 38519000 22423000 16096000 9418000 4026500 5391400 1229 1955 1266 3357;3358;3359;3360 5291;5292;5293;5294;5295;5296;5297 5292 7 ATEDGEEDEVSAGEK DESEDDMSSQASKSKATEDGEEDEVSAGEK ATEDGEEDEVSAGEKEQDSDESYDDSD___ K A T E K E 2 0 0 2 0 0 5 2 0 0 0 1 0 0 0 1 1 0 0 1 0 0 15 0 1564.6377 A0A024R2G2;Q9BXW9 A0A024R2G2 1425 1439 FANCD2 Fanconi anemia group D2 protein yes no 2 0.0011654 66.498 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 964990 0 964990 964990 0 964990 0 0 0 1230 111 1267 3361 5298 5298 1 ATEMVEVGADDDEGGAER FHVKKIREGQVEVLKATEMVEVGADDDEGG MVEVGADDDEGGAERGEAGDLRRGSSPDVH K A T E R G 3 1 0 3 0 0 4 3 0 0 0 0 1 0 0 0 1 0 0 2 0 0 18 0 1849.7636 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 311 328 PTRF Polymerase I and transcript release factor yes no 2 3.0353E-23 136.24 2 1.1259 1.1363 6.1759 2 Median 1.1259 1.1363 6.1759 2 0 Median NaN NaN NaN 0 0 Median 30801000 15192000 15608000 30801000 15192000 15608000 0 0 0 1231 1017 1268 3362;3363 5299;5300;5301;5302;5303 5303 802 5 ATEMVEVGADDDEGGAERGEAGDLR FHVKKIREGQVEVLKATEMVEVGADDDEGG DDEGGAERGEAGDLRRGSSPDVHALLEITE K A T L R R 4 2 0 4 0 0 5 5 0 0 1 0 1 0 0 0 1 0 0 2 0 0 25 1 2548.0984 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 311 335 PTRF Polymerase I and transcript release factor yes no 3 1.4289E-36 133.68 2 0.98691 1.0902 2.7213 2 Median 0.98691 1.0902 2.7213 2 0 Median NaN NaN NaN 0 0 Median 54434000 26117000 28318000 54434000 26117000 28318000 0 0 0 1232 1017 1269 3364;3365 5304;5305;5306;5307 5304 802 4 ATENDIANFFSPLNPIR FHGGHFVHMRGLPFRATENDIANFFSPLNP ENDIANFFSPLNPIRVHIDIGADGRATGEA R A T I R V 2 1 3 1 0 0 1 0 0 2 1 0 0 2 2 1 1 0 0 0 0 0 17 0 1917.9585 Q53F48;A0A024QZK8;P31942;A0A024QZP1;B4DHY1 Q53F48 206 222 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 2 4.8221E-09 104.17 2 1.9495 2.2131 0.22845 2 Median 1.9495 2.2131 0.22845 2 0 Median NaN NaN NaN 0 0 Median 126710000 43062000 83649000 126710000 43062000 83649000 0 0 0 1233 23 1270 3366;3367 5308;5309;5310;5311;5312 5310 5 ATENDIYNFFSPLNPMR STTGHCVHMRGLPYRATENDIYNFFSPLNP ENDIYNFFSPLNPMRVHIEIGPDGRVTGEA R A T M R V 1 1 3 1 0 0 1 0 0 1 1 0 1 2 2 1 1 0 1 0 0 0 17 0 2027.9411 P55795;B4DFK9;B4DP00 P55795 300 316 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes no 2 5.4816E-05 58.674 2 1 1.1467 1.2236 73.638 3 Median 1.1977 1.2512 3.1524 2 0 Median 0.41393 0.34966 NaN 1 0 Median 46644000 21035000 25609000 43648000 18770000 24877000 2996300 2264600 731680 1234 1617 1271 3368;3369;3370 5313;5314;5315 5313 1404 2 ATENDIYNFFSPLNPVR STTGHCVHMRGLPYRATENDIYNFFSPLNP ENDIYNFFSPLNPVRVHIEIGPDGRVTGEA R A T V R V 1 1 3 1 0 0 1 0 0 1 1 0 0 2 2 1 1 0 1 1 0 0 17 0 1995.969 A0A024R7T3;P52597;B4DKS8;E9PCY7;G8JLB6;P31943;H0YB39;H0YBG7;Q68DG4;H0YBD7;B4DP51 E9PCY7 300 316 HNRPF;HNRNPF;HNRNPH1;DKFZp686A15170 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed no no 2 9.0325E-13 139.46 2 2 1.735 1.484 33.973 4 Linear 1.7016 1.9817 0.15638 2 0 Median 1.2698 1.1004 1.5417 2 0 Median 599730000 230660000 369070000 482810000 178800000 304010000 116920000 51864000 65055000 1235 1231;234 1272 3371;3372;3373;3374 5316;5317;5318;5319;5320;5321;5322;5323;5324;5325 5320 10 ATENPEQVASEGLPEPVLR TGSQGLSSLAEEAARATENPEQVASEGLPE PEQVASEGLPEPVLRKVELPVPTHRRPVQA R A T L R K 2 1 1 0 0 1 4 1 0 0 2 0 0 0 3 1 1 0 0 2 0 0 19 0 2035.0222 K7EKI4;K7ELF1;K7ELQ0;K7ES61;A0A024R7C5;X6RAY8;Q9BYD3 K7EKI4 31 49 MRPL4 39S ribosomal protein L4, mitochondrial yes no 2 1.8921E-05 62.68 2 2 1.2278 1.1543 17.145 4 Median 1.0533 1.0571 5.4199 2 0 Median 1.5568 1.3537 15.519 2 0 Median 35715000 17562000 18154000 29617000 15081000 14536000 6098400 2481300 3617100 1236 219 1273 3375;3376;3377;3378 5326;5327;5328;5329;5330;5331;5332 5329 7 ATEPVIAFYEK DNEETIKKRLETYYKATEPVIAFYEKRGIV TYYKATEPVIAFYEKRGIVRKVNAEGSVDS K A T E K R 2 0 0 0 0 0 2 0 0 1 0 1 0 1 1 0 1 0 1 1 0 0 11 0 1266.6496 Q6FGX9;Q53EY8;Q5T9B7;P00568;H0Y4J6 Q6FGX9 156 166 AK1 Adenylate kinase isoenzyme 1 yes no 2 0.0005685 74.162 1 2.6127 2.5596 NaN 1 Median 2.6127 2.5596 NaN 1 0 Median NaN NaN NaN 0 0 Median 21680000 6510700 15169000 21680000 6510700 15169000 0 0 0 1237 1436 1274 3379 5333 5333 1 ATEQSLDPPIEEEHQLR NEAVAALCGDQEIMKATEQSLDPPIEEEHQ EQSLDPPIEEEHQLRNSIEKLRARLEADEK K A T L R N 1 1 0 1 0 2 4 0 1 1 2 0 0 0 2 1 1 0 0 0 0 0 17 0 1990.9596 P49454 P49454 2380 2396 CENPF Centromere protein F yes yes 3 4.5631E-05 50.827 1 1.1024 1.1194 NaN 1 Median 1.1024 1.1194 NaN 1 0 Median NaN NaN NaN 0 0 Median 18261000 8753300 9507900 18261000 8753300 9507900 0 0 0 1238 1581 1275 3380 5334;5335 5335 2 ATESGAQSAPLPMEGVDISPK ______________________________ QSAPLPMEGVDISPKQDEGVLKVIKREGTG K A T P K Q 3 0 0 1 0 1 2 2 0 1 1 1 1 0 3 3 1 0 0 1 0 0 21 0 2084.0096 B2R9U2;Q02790;F5H120 B2R9U2 8 28 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes no 2 1.1893E-06 62.287 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3945900 0 3945900 3945900 0 3945900 0 0 0 1239 868 1276 3381 5336;5337 5336 680 2 ATEVAADALGEEWK ______________________________ MATEVAADALGEEWKGYVVRISGGNDKQGF M A T W K G 4 0 0 1 0 0 3 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 14 0 1488.7096 A2A3R5 A2A3R5 2 15 RPS6 40S ribosomal protein S6 yes yes 2 5.7376E-05 91.961 1 1 1.7509 1.3839 NaN 1 Median NaN NaN NaN 0 0 Median 1.7509 1.3839 NaN 1 0 Median 3200300 1052300 2147900 0 0 0 3200300 1052300 2147900 1240 648 1277 3382;3383 5338;5339;5340 5339 3 ATFAFGAQTSTTADQGAAK SMTKPSEKESEQPAKATFAFGAQTSTTADQ FGAQTSTTADQGAAKPVFSFLNNSSSSSST K A T A K P 6 0 0 1 0 2 0 2 0 0 0 1 0 2 0 1 4 0 0 0 0 0 19 0 1842.8748 A0A024QZW7;P49790 A0A024QZW7 1169 1187 NUP153 Nuclear pore complex protein Nup153 yes no 2 0.002161 53.967 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1241 31 1278 3384 5341 5341 1 ATFCLPILGVK GLRFKKAHVTHPELKATFCLPILGVKKNPS PELKATFCLPILGVKKNPSSPLYTTLGVIT K A T V K K 1 0 0 0 1 0 0 1 0 1 2 1 0 1 1 0 1 0 0 1 0 0 11 0 1217.6842 Q5J7U2;O95478 Q5J7U2 190 200 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 0.00042 79.906 2 2 1.0192 0.96625 1.4898 4 Median 0.87813 0.96839 0.062699 2 0 Median 1.205 0.95166 1.9017 2 0 Median 135920000 69037000 66886000 102160000 53996000 48169000 33759000 15042000 18717000 1242 1427 1279 3385;3386;3387;3388 5342;5343;5344;5345;5346;5347;5348 5343 7 ATFDAISK TSARGCTATLGNFAKATFDAISKTYSYLTP TLGNFAKATFDAISKTYSYLTPDLWKETVF K A T S K T 2 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 8 0 851.43888 P15880;Q8N5L9;Q6IPX5;H0YEN5;E9PQD7;Q9BSW5;O60249;Q6ZNN8;Q8NI62 P15880 239 246 RPS2;OK/KNS-cl.6 40S ribosomal protein S2 no no 2 0.0037164 95.909 2 2 0.96472 0.94435 30.3 4 Median 1.0473 1.2241 1.5923 2 0 Median 0.88223 0.7248 2.3215 2 0 Median 715480000 345080000 370400000 650210000 310130000 340090000 65269000 34954000 30314000 1243 1485;1930 1280 3389;3390;3391;3392 5349;5350;5351;5352;5353;5354 5349 6 ATFLGLTNEK EPYRNAQNPSLHHPRATFLGLTNEKIVLLS LHHPRATFLGLTNEKIVLLSANSIRATVAT R A T E K I 1 0 1 0 0 0 1 1 0 0 2 1 0 1 0 0 2 0 0 0 0 0 10 0 1092.5815 E7EMW7;O95071 E7EMW7 408 417 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.00013082 96.331 2 1.4695 1.5166 1.1554 2 Median 1.4695 1.5166 1.1554 2 0 Median NaN NaN NaN 0 0 Median 60362000 26069000 34293000 60362000 26069000 34293000 0 0 0 1244 1218 1281 3393;3394 5355;5356;5357 5355 3 ATGEADVEFVTHEDAVAAMSK LNPIRVHIDIGADGRATGEADVEFVTHEDA VEFVTHEDAVAAMSKDKNNMQHRYIKLFLN R A T S K D 5 0 0 2 0 0 3 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2176.9947 Q53F48;A0A024QZK8;P31942;A0A024QZP1;B4DHY1 Q53F48 233 253 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 3 1.1781E-11 92.932 2 4.4271 4.8281 0.31927 2 Median 4.4271 4.8281 0.31927 2 0 Median NaN NaN NaN 0 0 Median 81128000 16282000 64845000 81128000 16282000 64845000 0 0 0 1245 23 1282 3395;3396 5358;5359;5360 5359 9 3 ATGGGLSSVGGGSSTIK SGLGVGGGFSSSSGRATGGGLSSVGGGSST GGGLSSVGGGSSTIKYTTTSSSSRKSYKH_ R A T I K Y 1 0 0 0 0 0 0 6 0 1 1 1 0 0 0 4 2 0 0 1 0 0 17 0 1434.7314 CON__P04259;B4DKV4 CON__P04259 534 550 no no 2 3.1879E-09 100.22 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34507000 34507000 0 32603000 32603000 0 1904000 1904000 0 + 1246 1154 1283 3397;3398;3399 5361;5362;5363 5362 3 ATGILLYGLASR AATQAQQTLGSTIDKATGILLYGLASRLRD IDKATGILLYGLASRLRDTRRLSFLVSYIA K A T S R L 2 1 0 0 0 0 0 2 0 1 3 0 0 0 0 1 1 0 1 0 0 0 12 0 1233.7081 Q53HS0;P47897;A8K3A8;B4DNN3;B4DTH6;A0A0U1RQM8;A0A0U1RQU2;B7Z840;A0A0U1RQT0;A0A0U1RRI9;A0A0U1RQE9;A0A0U1RQL2;C9J165;F2Z2V6;I3QNU8 Q53HS0 51 62 QARS Glutamine--tRNA ligase yes no 2 0.00075687 66.262 2 2 1.5706 1.5373 47.012 3 Plateau 1.5837 1.5769 NaN 1 0 Median 0.80335 0.70076 5.94 2 0 Median 19843000 12389000 7453800 14602000 9539700 5062500 5240600 2849300 2391300 1247 1575 1284 3400;3401;3402;3403 5364;5365;5366;5367;5368;5369 5364 6 ATGPPVSELITK KATKKAAGAGAAKRKATGPPVSELITKAVA KRKATGPPVSELITKAVAASKERNGLSLAA K A T T K A 1 0 0 0 0 0 1 1 0 1 1 1 0 0 2 1 2 0 0 1 0 0 12 0 1211.6762 P16401 P16401 38 49 HIST1H1B Histone H1.5 yes yes 2 2.3628E-73 202.34 5 2 0.67354 0.73066 12.945 2 Median 0.67354 0.73066 12.945 2 0 Median NaN NaN NaN 0 0 Median 12845000000 12836000000 8893100 10929000000 10920000000 8893100 1916000000 1916000000 0 1248 1489 1285 3404;3405;3406;3407;3408;3409;3410 5370;5371;5372;5373;5374;5375;5376;5377;5378;5379;5380;5381;5382;5383;5384 5374 15 ATGPVVEQAVR AAYAIPMLQLLLHRKATGPVVEQAVRGLVL LHRKATGPVVEQAVRGLVLVPTKELARQAQ K A T V R G 2 1 0 0 0 1 1 1 0 0 0 0 0 0 1 0 1 0 0 3 0 0 11 0 1125.6142 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 74 84 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0024553 61.593 1 2 1.2057 0.98165 1.1918 3 Median 0.86061 0.97918 NaN 1 0 Median 1.215 0.99115 1.3624 2 0 Median 142300000 70897000 71401000 113800000 57956000 55847000 28495000 12941000 15554000 1249 2081 1286 3411;3412;3413 5385;5386;5387;5388;5389 5387 5 ATHDGAPELGAGGTR SDVYGANLFHQYLQKATHDGAPELGAGGTR ATHDGAPELGAGGTRQQQPSASQSCISILV K A T T R Q 3 1 0 1 0 0 1 4 1 0 1 0 0 0 1 0 2 0 0 0 0 0 15 0 1408.6695 Q9BXW7;A8MYZ9;B3KVW8 Q9BXW7 332 346 CECR5 Cat eye syndrome critical region protein 5 yes no 3 0.029499 22.154 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3375300 3375300 0 3375300 3375300 0 0 0 0 1250 2015 1287 3414 5390 5390 1 ATHGQTCARPMCIPPSYADLGK ______________________________ ARPMCIPPSYADLGKAARDIFNKGFGFGLV M A T G K A 3 1 0 1 2 1 0 2 1 1 1 1 1 0 3 1 2 0 1 0 0 0 22 1 2430.1243 A0A0A0MR02;A0A024QZT0;P45880;Q5JSD2;Q5JSD1 A0A0A0MR02 2 23 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 3 1.0558E-08 68.552 2 3.1435 3.5978 0.12069 2 Median 3.1435 3.5978 0.12069 2 0 Median NaN NaN NaN 0 0 Median 53497000 12968000 40530000 53497000 12968000 40530000 0 0 0 1251 28 1288 3415;3416 5391;5392;5393 5393 16 3 ATIAGGGVIPHIHK QLAIRGDEELDSLIKATIAGGGVIPHIHKS KATIAGGGVIPHIHKSLIGKKGQQKTA___ K A T H K S 2 0 0 0 0 0 0 3 2 3 0 1 0 0 1 0 1 0 0 1 0 0 14 0 1369.783 Q71UI9;P0C0S5 Q71UI9 103 116 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 2;3 1.6264E-09 152.27 5 3 0.70118 0.79669 8.2283 7 Median 0.68703 0.80091 8.2162 5 0 Median 0.8876 0.72767 1.0194 2 0 Median 7477400000 4334300000 3143100000 7214600000 4100800000 3113700000 262820000 233470000 29359000 1252 1462 1289 3417;3418;3419;3420;3421;3422;3423;3424 5394;5395;5396;5397;5398;5399;5400;5401;5402;5403;5404;5405;5406;5407;5408;5409 5404 15 ATIEDILFK ______________________________ ESGSLKATIEDILFKAKRKRVFEHHGQVRL K A T F K A 1 0 0 1 0 0 1 0 0 2 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1048.5805 R4GMS9;Q86U80;D6RJD3;B4DKI6;D6RID8;Q6P1K8;Q13888;D6RAW1;D6RIT7;D6RGC9 R4GMS9 14 22 GTF2H2;GTF2H2C General transcription factor IIH subunit 2-like protein;General transcription factor IIH subunit 2 yes no 2 0.028466 53.968 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2553700 2553700 0 2553700 2553700 0 0 0 0 1253 989 1290 3425;3426 5410;5411 5410 2 ATILDLSCNK DLNEVPVKELAALPKATILDLSCNKLTTLP AALPKATILDLSCNKLTTLPSDFCGLTHLV K A T N K L 1 0 1 1 1 0 0 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1133.5751 Q96AG4 Q96AG4 41 50 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 7.6247E-12 141.52 2 2 0.79844 0.75227 31.826 4 Median 0.89589 0.97685 2.61 2 0 Median 0.70505 0.56516 6.1123 2 0 Median 100960000 53397000 47558000 79475000 40794000 38681000 21481000 12604000 8877100 1254 1958 1291 3427;3428;3429;3430 5412;5413;5414;5415;5416;5417;5418;5419;5420 5415 9 ATISLSDSDLLR LLTDGDVHIRDDGRRATISLSDSDLLRLEG GRRATISLSDSDLLRLEGDSRTVRLLKELR R A T L R L 1 1 0 2 0 0 0 0 0 1 3 0 0 0 0 3 1 0 0 0 0 0 12 0 1289.6827 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 1088 1099 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0005793 68.893 2 1.0439 1.1544 0.21647 2 Median 1.0439 1.1544 0.21647 2 0 Median NaN NaN NaN 0 0 Median 116840000 60801000 56039000 116840000 60801000 56039000 0 0 0 1255 122 1292 3431;3432 5421;5422 5421 1 ATISNDGATILK GPRGMDKLIVDGRGKATISNDGATILKLLD RGKATISNDGATILKLLDVVHPAAKTSVDI K A T L K L 2 0 1 1 0 0 0 1 0 2 1 1 0 0 0 1 2 0 0 0 0 0 12 0 1202.6507 Q6IBT3;Q53HV2;Q99832;F8WAM2 Q6IBT3 56 67 CCT7 T-complex protein 1 subunit eta yes no 2 0.00068455 67.334 2 5.2219 5.4343 NaN 1 Median 5.2219 5.4343 NaN 1 0 Median NaN NaN NaN 0 0 Median 24925000 1711100 23214000 24925000 1711100 23214000 0 0 0 1256 1791 1293 3433;3434 5423;5424 5423 2 ATKPQPVNTSSVTVK ESSAATKKLSATIPKATKPQPVNTSSVTVK ATKPQPVNTSSVTVKSNRSSNMTATTKFVS K A T V K S 1 0 1 0 0 1 0 0 0 0 0 2 0 0 2 2 3 0 0 3 0 0 15 1 1555.857 B2RMQ4;Q8WWK9 B2RMQ4 214 228 CKAP2 Cytoskeleton-associated protein 2 yes no 2;3 5.968E-05 92.19 4 2 0.85571 0.98977 14.535 5 Median 0.74123 0.88553 7.535 3 0 Median 1.3556 1.1637 0.42926 2 0 Median 151310000 64428000 86880000 129890000 55042000 74848000 21418000 9385800 12032000 1257 895 1294 3435;3436;3437;3438;3439;3440 5425;5426;5427;5428;5429;5430;5431 5426 7 ATLDVFFVPLK VNHGELLNAAIEALKATLDVFFVPLKELAD EALKATLDVFFVPLKELADLPQNKSSQESI K A T L K E 1 0 0 1 0 0 0 0 0 0 2 1 0 2 1 0 1 0 0 2 0 0 11 0 1248.7118 B3KTW3;Q9NXV6 B3KTW3 221 231 CDKN2AIP CDKN2A-interacting protein yes no 2 0.00018274 93.551 2 1.4627 1.6034 4.0188 2 Median 1.4627 1.6034 4.0188 2 0 Median NaN NaN NaN 0 0 Median 6410100 2705500 3704600 6410100 2705500 3704600 0 0 0 1258 945 1295 3441;3442 5432;5433;5434;5435 5434 4 ATLEVILRPK YGPAEVKVSKEIFNKATLEVILRPKIGLPG EIFNKATLEVILRPKIGLPGVAEKSRERLI K A T P K I 1 1 0 0 0 0 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 10 1 1138.7074 Q9NQT4;B2RC50;M0R102 Q9NQT4 74 83 EXOSC5 Exosome complex component RRP46 yes no 2 0.0015564 94.85 1 1 0.73319 0.83856 NaN 1 Median 0.73319 0.83856 NaN 1 0 Median NaN NaN NaN 0 0 Median 23727000 12765000 10961000 21934000 12765000 9168300 1793000 0 1793000 1259 2060 1296 3443;3444 5436;5437 5437 1 ATLLLESGIR DNKTYLIRLQKPDFKATLLLESGIRIHTTE KPDFKATLLLESGIRIHTTEFEWPKNMMPS K A T I R I 1 1 0 0 0 0 1 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 10 0 1071.6288 G3V547;G3V4D9;G3V5V3;O60524 G3V547 48 57 NEMF Nuclear export mediator factor NEMF yes no 2 0.041621 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1260 1274 1297 3445 5438 5438 1 ATLLQQR TNTEIVECILKRGQKATLLQQRREGEMKEI CILKRGQKATLLQQRREGEMKEIERPFETY K A T Q R R 1 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 828.48175 P46013 P46013 911 917 MKI67 Antigen KI-67 yes yes 2 0.0038206 133.99 2 2 2.371 2.3713 21.77 4 Median 1.6754 1.9649 1.2962 2 0 Median 3.3039 2.8634 1.3737 2 0 Median 841080000 284740000 556330000 736520000 260000000 476520000 104560000 24747000 79817000 1261 1569 1298 3446;3447;3448;3449 5439;5440;5441;5442;5443;5444;5445;5446 5441 8 ATLNAFLYR FLRKRATEKISEDLRATLNAFLYRTGQHSN ISEDLRATLNAFLYRTGQHSNKFMLVLASN R A T Y R T 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 9 0 1067.5764 Q9NVI7;H0Y2W2;Q5T2N8;Q5SV16 Q9NVI7 479 487 ATAD3A;ATAD3C ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C yes no 2 0.007781 73.616 1 1.6027 1.683 NaN 1 Median 1.6027 1.683 NaN 1 0 Median NaN NaN NaN 0 0 Median 39548000 12569000 26979000 39548000 12569000 26979000 0 0 0 1262 2074 1299 3450 5447;5448 5447 2 ATLQEILPEVLK QPRKALVDILSEVSKATLQEILPEVLKADL VSKATLQEILPEVLKADLNIILSSPEQLEL K A T L K A 1 0 0 0 0 1 2 0 0 1 3 1 0 0 1 0 1 0 0 1 0 0 12 0 1352.7915 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 191 202 MYBBP1A Myb-binding protein 1A yes no 2 2.1502E-47 175.34 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 155140000 155140000 0 128680000 128680000 0 26462000 26462000 0 1263 1997 1300 3451;3452;3453 5449;5450;5451 5449 3 ATLSAEVYR RIWNNEDVNLDKVFKATLSAEVYRILSVQG LDKVFKATLSAEVYRILSVQGTEPLVLFKE K A T Y R I 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 9 0 1008.524 Q9H8H0;J3QLQ6 Q9H8H0 103 111 NOL11 Nucleolar protein 11 yes no 2 0.0010227 91.069 2 2 1.0351 0.9983 5.3183 4 Median 0.84847 0.96715 1.5382 2 0 Median 1.2823 1.049 4.0618 2 0 Median 290470000 154170000 136290000 260930000 141260000 119670000 29533000 12912000 16621000 1264 2042 1301 3454;3455;3456;3457 5452;5453;5454;5455;5456;5457;5458 5454 7 ATLSSIR PATSYVRTTINKNARATLSSIRHMIRKNKY TTINKNARATLSSIRHMIRKNKYRPDLRMA R A T I R H 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 0 7 0 746.42865 P46779;H0YKD8;O60251 P46779 88 94 RPL28 60S ribosomal protein L28 yes no 2 1.2441E-06 154.11 2 2 0.9274 0.92817 17.924 4 Median 0.91621 1.081 3.3845 2 0 Median 0.9274 0.79564 3.62 2 0 Median 1542300000 723770000 818550000 1487000000 694750000 792210000 55370000 29024000 26345000 1265 1572 1302 3458;3459;3460;3461 5459;5460;5461;5462;5463;5464 5461 6 ATNDEIFSILK GHSVALCLAVAFKSKATNDEIFSILKDVPN FKSKATNDEIFSILKDVPNPNQDDDDDEGF K A T L K D 1 0 1 1 0 0 1 0 0 2 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1249.6554 A0A024R179;Q09161 A0A024R179 512 522 NCBP1 Nuclear cap-binding protein subunit 1 yes no 2 0.00041914 79.974 1 1.4229 1.4696 NaN 1 Median 1.4229 1.4696 NaN 1 0 Median NaN NaN NaN 0 0 Median 11011000 4797200 6213700 11011000 4797200 6213700 0 0 0 1266 73 1303 3462 5465 5465 1 ATNESEDEIPQLVPIGK EHGKKKRGRGKAQVKATNESEDEIPQLVPI NESEDEIPQLVPIGKKTPANEKVEIQKHAT K A T G K K 1 0 1 1 0 1 3 1 0 2 1 1 0 0 2 1 1 0 0 1 0 0 17 0 1838.9262 O76021;J3QSV6;A0PJ61;Q32Q62 O76021 357 373 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.0931E-18 158.58 2 2 0.82929 0.96596 15.114 4 Linear 0.8054 0.9525 2.581 2 0 Median 0.8363 0.73453 1.832 2 0 Median 1754400000 982490000 771890000 1090300000 614440000 475820000 664120000 368050000 296060000 1267 1415 1304 3463;3464;3465;3466 5466;5467;5468;5469;5470;5471;5472;5473 5466 8 ATNIEVLSNTFQFTNEAR VRFNISTDRRDKLERATNIEVLSNTFQFTN IEVLSNTFQFTNEAREMGVIAAMRDGFGFI R A T A R E 2 1 3 0 0 1 2 0 0 1 1 0 0 2 0 1 3 0 0 1 0 0 18 0 2054.0069 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0 Q9GZV0 300 317 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 4.5783E-22 125.53 2 2 2.6558 2.7846 30.934 3 Plateau 2.6557 2.843 2.9307 2 0 Median 2.0374 1.6657 NaN 1 0 Median 95003000 31728000 63275000 75606000 20582000 55024000 19397000 11146000 8250600 1268 42 1305 3467;3468;3469;3470 5474;5475;5476;5477;5478;5479;5480;5481 5477 8 ATQAHSLSYAGCNFLR ______________________________ TQAHSLSYAGCNFLRQRLVLSTLSGRPVKI M A T L R Q 3 1 1 0 1 1 0 1 1 0 2 0 0 1 0 2 1 0 1 0 0 0 16 0 1794.8472 Q9Y2P8;Q5VYW8 Q9Y2P8 2 17 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 8.989E-12 114.56 3 2 1.2772 1.0956 14.92 4 Median 1.0201 1.0388 25.288 2 0 Median 1.3338 1.0956 0.004678 2 0 Median 67395000 26099000 41296000 40815000 14475000 26340000 26580000 11624000 14957000 1269 2125 1306 3471;3472;3473;3474;3475 5482;5483;5484;5485;5486;5487;5488;5489;5490;5491;5492 5487 11 ATQALVLAPTR TFAISILQQIELDLKATQALVLAPTRELAQ LDLKATQALVLAPTRELAQQIQKVVMALGD K A T T R E 3 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 11 0 1139.6663 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;B4E047;J3KS25;B4E102 A8K7F6 100 110 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 5.0805E-31 182.46 2 2 1.5965 1.5789 38.14 4 Median 1.8658 2.1908 1.2994 2 0 Median 1.3585 1.1321 2.024 2 0 Median 852150000 312520000 539640000 815650000 297270000 518370000 36508000 15243000 21265000 1270 770 1307 3476;3477;3478;3479 5493;5494;5495;5496;5497;5498;5499;5500;5501;5502 5497 10 ATQEWLEK QLQDALNELTEEHSKATQEWLEKQAQLEKE LTEEHSKATQEWLEKQAQLEKELSAALQDK K A T E K Q 1 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 8 0 1003.4975 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 351 358 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.013109 66.073 2 1.4052 1.1167 0.015943 2 Median NaN NaN NaN 0 0 Median 1.4052 1.1167 0.015943 2 0 Median 8778200 3714700 5063400 0 0 0 8778200 3714700 5063400 1271 186;1747;718 1308 3480;3481 5503;5504;5505 5505 3 ATQLLEGLVQELQK AWDSVDLDNPQENIKATQLLEGLVQELQKK KATQLLEGLVQELQKKAEHQVGEDGFLLKI K A T Q K K 1 0 0 0 0 3 2 1 0 0 4 1 0 0 0 0 1 0 0 1 0 0 14 0 1568.8774 Q8WW55;Q59H39;P51692;C9J4I3 Q8WW55 57 70 STAT5B Signal transducer and activator of transcription;Signal transducer and activator of transcription 5B yes no 2 0.00016448 74.392 1 2.0573 2.101 NaN 1 Median 2.0573 2.101 NaN 1 0 Median NaN NaN NaN 0 0 Median 11991000 3480900 8510400 11991000 3480900 8510400 0 0 0 1272 1597 1309 3482 5506;5507 5507 2 ATQQQHDFTLTQTADGR EGSLSARWPVAGQIRATQQQHDFTLTQTAD QQQHDFTLTQTADGRSSFDWLTGSSTDPLV R A T G R S 2 1 0 2 0 4 0 1 1 0 1 0 0 1 0 0 4 0 0 0 0 0 17 0 1916.8977 P78527 P78527 2637 2653 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.1016E-57 225.85 4 2 0.63405 0.7053 45.584 6 Median 0.65752 0.75232 9.1837 4 0 Median 0.37123 0.31235 5.7071 2 0 Median 452130000 277700000 174430000 402790000 242550000 160240000 49346000 35155000 14191000 1273 1665 1310 3483;3484;3485;3486;3487;3488 5508;5509;5510;5511;5512;5513;5514;5515;5516;5517;5518;5519 5514 12 ATQTLQANESASDILILR QEEGRERSRRAAAVKATQTLQANESASDIL TLQANESASDILILRSHESNAPGSAGGQAS K A T L R S 3 1 1 1 0 2 1 0 0 2 3 0 0 0 0 2 2 0 0 0 0 0 18 0 1943.0324 A0A1C7CYX1;A0A0A0MSU2;A0PJD3;A0A024R689;Q6PJG2 A0A1C7CYX1 970 987 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 2 0.023977 23.682 1 1.0188 0.86343 NaN 1 Median NaN NaN NaN 0 0 Median 1.0188 0.86343 NaN 1 0 Median 2927400 1250000 1677400 0 0 0 2927400 1250000 1677400 1274 638 1311 3489 5520 5520 1 ATRDELPYTFAAPESYEELR TPGKGLISGKERAGKATRDELPYTFAAPES LPYTFAAPESYEELRSLLLGRSMEEQLLVV K A T L R S 3 2 0 1 0 0 4 0 0 0 2 0 0 1 2 1 2 0 2 0 0 0 20 1 2357.1176 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 417 436 NOP14 Nucleolar protein 14 yes no 3 1.2308E-06 61.616 2 2 1.184 1.1384 12.033 4 Median 1.0076 1.1136 5.1368 2 0 Median 1.4409 1.2578 16.114 2 0 Median 115570000 48185000 67388000 51226000 21023000 30203000 64347000 27162000 37185000 1275 790 1312 3490;3491;3492;3493 5521;5522;5523;5524;5525;5526 5522 5 ATSELILLPVTGLECVGDR SRIDMDALEDYVWPRATSELILLPVTGLEC LILLPVTGLECVGDRLLAGEGPDVLVYSLD R A T D R L 1 1 0 1 1 0 2 2 0 1 4 0 0 0 1 1 2 0 0 2 0 0 19 0 2042.0718 A0A087X295;Q9NNW5;B4DK45;C9K020;B3KRR8;E9PBK6;B4DLP3;E5RFX3;F8WE36;Q9NW86 A0A087X295 42 60 WDR6 WD repeat-containing protein 6 yes no 2 2.8425E-09 80.469 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17236000 17236000 0 17236000 17236000 0 0 0 0 1276 451 1313 3494;3495 5527;5528 5527 2 ATSEVPGSQASPNPVPGDGLHR LEMGIKAARPEIADRATSEVPGSQASPNPV SQASPNPVPGDGLHRAGFDAFMTGYVMAYV R A T H R A 2 1 1 1 0 1 1 3 1 0 1 0 0 0 4 3 1 0 0 2 0 0 22 0 2172.056 Q96GM8;B3KSC7 Q96GM8 418 439 TOE1 Target of EGR1 protein 1 yes no 3 1.7766E-05 40.158 2 1.2317 1.2825 10.97 2 Median 1.2317 1.2825 10.97 2 0 Median NaN NaN NaN 0 0 Median 42928000 19814000 23115000 42928000 19814000 23115000 0 0 0 1277 1968 1314 3496;3497 5529;5530 5530 1 ATSFLLALEPELEAR AEVVLAHLGGGSTSRATSFLLALEPELEAR ATSFLLALEPELEARLAHLGVQVKGEDEEE R A T A R L 3 1 0 0 0 0 3 0 0 0 4 0 0 1 1 1 1 0 0 0 0 0 15 0 1658.8879 Q96HX3;Q6IBR0;Q53EP4;P04843;F8WF32 Q96HX3 27 41 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 5.251E-15 125.72 2 1.172 1.2331 7.6953 2 Median 1.172 1.2331 7.6953 2 0 Median NaN NaN NaN 0 0 Median 45314000 20902000 24412000 45314000 20902000 24412000 0 0 0 1278 1444 1315 3498;3499 5531;5532;5533;5534 5533 4 ATSGAATPVIASTK HMPMLRNNRDKDLIRATSGAATPVIASTKS RATSGAATPVIASTKSNLALTSPGRPPMGF R A T T K S 4 0 0 0 0 0 0 1 0 1 0 1 0 0 1 2 3 0 0 1 0 0 14 0 1273.6878 B4E3J2;F5H586;Q5H9S4;H0Y6W5;D3DRJ1;B4DR27;B1APH0;Q6ZN30 B4E3J2 339 352 BNC2;DKFZp686A01127;hCG_27250 Zinc finger protein basonuclin-2 yes no 2 0.023969 42.629 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5793700 0 5793700 4716700 0 4716700 1077000 0 1077000 1279 819 1316 3500;3501 5535;5536 5536 2 ATSILEFYR ATLSVGGKTVSRFRKATSILEFYRELGLPP VSRFRKATSILEFYRELGLPPKQTVKIFNI K A T Y R E 1 1 0 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 1 0 0 0 9 0 1098.571 H0Y9G6;E7ETU7;B4DKM0;P09001;D6RC14;E9PF06;B4DW56 H0Y9G6 173 181 MRPL3 39S ribosomal protein L3, mitochondrial yes no 2 0.041466 41.448 1 1.0798 0.95412 NaN 1 Median NaN NaN NaN 0 0 Median 1.0798 0.95412 NaN 1 0 Median 1474900 702580 772360 0 0 0 1474900 702580 772360 1280 992 1317 3502 5537 5537 1 ATTGTQTLLSSGTR GLLRAQGLRGWKARRATTGTQTLLSSGTRL RATTGTQTLLSSGTRLKHHGRQAPGLSQAK R A T T R L 1 1 0 0 0 1 0 2 0 0 2 0 0 0 0 2 5 0 0 0 0 0 14 0 1392.7209 M0R3F6;A8K5G0;A0A024R7K0;M0R2Z9;Q8IX01;B4DSQ4 M0R3F6 696 709 SUGP2;SFRS14 SURP and G-patch domain-containing protein 2 yes no 2 0.0064663 42.031 1 1.2424 1.2194 NaN 1 Median 1.2424 1.2194 NaN 1 0 Median NaN NaN NaN 0 0 Median 13798000 6289800 7508400 13798000 6289800 7508400 0 0 0 1281 228 1318 3503 5538 5538 1 ATTGYPDPYGGEK LVGLELKEKLLAAERATTGYPDPYGGEKLA ERATTGYPDPYGGEKLALFQAIGKEVVDRA R A T E K L 1 0 0 1 0 0 1 3 0 0 0 1 0 0 2 0 2 0 2 0 0 0 13 0 1354.6041 A0A075B730;A0A087X1U6;P58107 A0A075B730 93 105 EPPK1 Epiplakin no no 2 0.0091914 53.567 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12769000 0 12769000 12769000 0 12769000 0 0 0 1282 397;1622 1319 3504 5539 5539 1 ATTLPTDFNYNVDTLVQLHLK ATILTKSTLENQNWRATTLPTDFNYNVDTL DFNYNVDTLVQLHLKPGTRLLKMAQGHRAE R A T L K P 1 0 2 2 0 1 0 0 1 0 4 1 0 1 1 0 4 0 1 2 0 0 21 0 2402.2482 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 505 525 NCAPH Condensin complex subunit 2 yes no 3 1.5196E-11 92.492 2 2 1.2068 1.2082 23.053 4 Median 0.86728 0.99192 2.3172 2 0 Median 1.72 1.4763 2.7657 2 0 Median 550540000 259710000 290830000 349490000 187950000 161540000 201050000 71757000 129290000 1283 740 1320 3505;3506;3507;3508 5540;5541;5542;5543;5544 5543 5 ATTLPTDFNYNVDTLVQLHLKPGTR ATILTKSTLENQNWRATTLPTDFNYNVDTL NVDTLVQLHLKPGTRLLKMAQGHRAETEHY R A T T R L 1 1 2 2 0 1 0 1 1 0 4 1 0 1 2 0 5 0 1 2 0 0 25 1 2813.4712 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 505 529 NCAPH Condensin complex subunit 2 yes no 4 0.00012524 41.763 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11148000 11148000 0 11148000 11148000 0 0 0 0 1284 740 1321 3509 5545 5545 1 ATTQILEELK DLLKSSKEELNNSLKATTQILEELKKTKMD NNSLKATTQILEELKKTKMDNLKYVNQLKK K A T L K K 1 0 0 0 0 1 2 0 0 1 2 1 0 0 0 0 2 0 0 0 0 0 10 0 1144.634 P49454;Q9UHT7;A0A087WTY4 P49454 2858 2867 CENPF Centromere protein F yes no 2 0.0033968 64.711 1 1.1485 1.1913 NaN 1 Median 1.1485 1.1913 NaN 1 0 Median NaN NaN NaN 0 0 Median 14802000 5748700 9052900 14802000 5748700 9052900 0 0 0 1285 1581 1322 3510 5546 5546 1 ATTVAGVPCQEWAAQEPHQHSIFTPETNPQSGLER ADCMIGTGKSYRGKKATTVAGVPCQEWAAQ SIFTPETNPQSGLERNYCRNPDGDVNGPWC K A T E R N 4 1 1 0 1 4 4 2 2 1 1 0 0 1 4 2 4 1 0 2 0 0 35 0 3872.8176 CON__P06868 CON__P06868 498 532 yes yes 4 0.0045303 27.967 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26712000 26712000 0 0 0 0 26712000 26712000 0 + 1286 1157 1323 3511;3512 5547;5548;5549 5547 3 ATVGILITTIASK SECLNNIGDSSPLIRATVGILITTIASKGE IRATVGILITTIASKGELQNWPDLLPKLCS R A T S K G 2 0 0 0 0 0 0 1 0 3 1 1 0 0 0 1 3 0 0 1 0 0 13 0 1286.781 A0A024RAM0;Q92973 A0A024RAM0 116 128 TNPO1 Transportin-1 yes no 2 0.00012053 77.062 2 1 2.8157 2.9224 41.419 3 Plateau 2.7951 2.8906 15.694 2 0 Median 1.8087 1.4481 NaN 1 0 Median 24435000 7307800 17127000 21548000 6555200 14993000 2886200 752620 2133600 1287 309 1324 3513;3514;3515 5550;5551;5552;5553 5552 4 ATVIQAFR LTNFFGTLDSVLRYRATVIQAFRDMNRFTV DSVLRYRATVIQAFRDMNRFTVNETVLSTK R A T F R D 2 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 8 0 904.51305 O60287 O60287 1954 1961 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.016634 60.972 1 1.0626 1.0832 NaN 1 Median 1.0626 1.0832 NaN 1 0 Median NaN NaN NaN 0 0 Median 14780000 8403200 6377100 14780000 8403200 6377100 0 0 0 1288 1392 1325 3516 5554 5554 1 ATVLQTVFEDYVHSSER AQKSHAVGPQEIRERATVLQTVFEDYVHSS VLQTVFEDYVHSSERRVSWAKKALQSFIQA R A T E R R 1 1 0 1 0 1 2 0 1 0 1 0 0 1 0 2 2 0 1 3 0 0 17 0 1979.9589 B4DYZ1;F8WAJ0;Q9H8H2 B4DYZ1 561 577 DDX31 Probable ATP-dependent RNA helicase DDX31 no no 3 0.0054504 26.808 1 2 1.1293 0.94327 11.262 3 Median 0.79153 0.78909 NaN 1 0 Median 1.1331 0.95742 2.1058 2 0 Median 21349000 9912900 11436000 8672500 4087400 4585100 12676000 5825500 6850600 1289 1053;1268 1326 3517;3518;3519 5555;5556;5557;5558;5559 5555 5 ATVSAPFGK ELVYTDSEARDVFEKATVSAPFGKFQGKTV RDVFEKATVSAPFGKFQGKTVTIWEIINSE K A T G K F 2 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 0 9 0 876.47052 Q15149;D3DWL0 Q15149 3045 3053 PLEC;PLEC1 Plectin yes no 2 0.0033474 71.877 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1290 1754 1327 3520 5560 5560 1 AVAEFLNR ARDFGYVCETEFPAKAVAEFLNRQHSDPNE ETEFPAKAVAEFLNRQHSDPNEQVTRKNML K A V N R Q 2 1 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 918.49232 Q96SH1;P05549 Q96SH1 318 325 TFAP2A Transcription factor AP-2-alpha yes no 2 0.041999 46.663 1 2.2614 2.3162 NaN 1 Median 2.2614 2.3162 NaN 1 0 Median NaN NaN NaN 0 0 Median 26117000 9008500 17108000 26117000 9008500 17108000 0 0 0 1291 1448 1328 3521 5561 5561 1 AVAFFLESIAMHDIIAAEK ALQVLGTEAQSSLLKAVAFFLESIAMHDII FLESIAMHDIIAAEKCFGTGAAGNRTSPQE K A V E K C 5 0 0 1 0 0 2 0 1 3 1 1 1 2 0 1 0 0 0 1 0 0 19 0 2075.0761 P78527 P78527 1293 1311 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 7.1181E-05 44.567 1 0.9173 0.96696 NaN 1 Median 0.9173 0.96696 NaN 1 0 Median NaN NaN NaN 0 0 Median 4304300 2537800 1766500 4304300 2537800 1766500 0 0 0 1292 1665 1329 3522 5562 5562 1442 1 AVAFHPR TKPYRMLRHHKKALRAVAFHPRYPLFASGS RHHKKALRAVAFHPRYPLFASGSDDGSVIV R A V P R Y 2 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 7 0 796.43441 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 668 674 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.00050691 143.22 2 2 1.0264 1.004 4.0834 4 Median 0.90125 1.0401 1.0901 2 0 Median 1.1647 0.97048 0.87706 2 0 Median 412600000 216470000 196120000 376080000 200630000 175450000 36520000 15845000 20675000 1293 1726 1330 3523;3524;3525;3526 5563;5564;5565;5566;5567;5568 5563 6 AVAHHTTAAFIR LMYGPPGCGKTMLAKAVAHHTTAAFIRVVG LAKAVAHHTTAAFIRVVGSEFVQKYLGEGP K A V I R V 4 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 2 0 0 1 0 0 12 0 1293.6942 A8K2M0;P43686 A8K2M0 218 229 PSMC4 26S protease regulatory subunit 6B yes no 3 0.0082025 48.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5786000 0 5786000 5786000 0 5786000 0 0 0 1294 710 1331 3527 5569 5569 1 AVAILCNHQR ENIPAKILSYNRANRAVAILCNHQRAPPKT NRANRAVAILCNHQRAPPKTFEKSMMNLQT R A V Q R A 2 1 1 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1180.6135 P11387;B9EG90;Q9BVT2 P11387 625 634 TOP1 DNA topoisomerase 1 yes no 2;3 2.0837E-30 181.81 4 4 1.2073 1.2246 8.2106 8 Median 0.9678 1.124 4.9095 4 0 Median 1.4961 1.2971 1.5068 4 0 Median 1378700000 665450000 713230000 1162200000 577870000 584310000 216500000 87578000 128920000 1295 1470 1332 3528;3529;3530;3531;3532;3533;3534;3535 5570;5571;5572;5573;5574;5575;5576;5577;5578;5579;5580;5581;5582;5583;5584;5585 5571 16 AVALYFIDK YREDWKSKEMKVRQRAVALYFIDKLALRAG MKVRQRAVALYFIDKLALRAGNEKEEGETA R A V D K L 2 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1038.575 P11387;B9EG90;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;E5RIC7;B4E061;D3DWJ7 P11387 476 484 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0043738 69.825 1 2 1.5422 1.3291 4.6873 2 Median NaN NaN NaN 0 0 Median 1.5422 1.3291 4.6873 2 0 Median 514510000 366610000 147900000 262550000 262550000 0 251960000 104060000 147900000 1296 1470 1333 3536;3537;3538 5586;5587;5588;5589;5590;5591;5592;5593 5589 8 AVANEVGAYVSVINGPEIISK LLYGPPGTGKTMIARAVANEVGAYVSVING GAYVSVINGPEIISKFYGETEAKLRQIFAE R A V S K F 3 0 2 0 0 0 2 2 0 3 0 1 0 0 1 2 0 0 1 4 0 0 21 0 2129.1368 Q8NB90 Q8NB90 406 426 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 1.9685E-06 49.482 2 1.1819 1.1907 NaN 1 Median 1.1819 1.1907 NaN 1 0 Median NaN NaN NaN 0 0 Median 11077000 3722300 7354700 11077000 3722300 7354700 0 0 0 1297 1919 1334 3539;3540 5594;5595;5596;5597 5596 4 AVANQTSATFLR ILYGPPGTGKTLLAKAVANQTSATFLRVVG LAKAVANQTSATFLRVVGSELIQKYLGDGP K A V L R V 3 1 1 0 0 1 0 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 12 0 1277.6728 Q53XL8;Q53HB3;P62191 Q53XL8 238 249 PSMC1 26S protease regulatory subunit 4 yes no 2 1.144E-22 155.42 2 2 1.735 1.6346 29.251 4 Median 2.0205 2.0722 3.8956 2 0 Median 1.4456 1.2573 7.4531 2 0 Median 44780000 15380000 29400000 40638000 13292000 27347000 4141400 2088400 2053000 1298 1634 1335 3541;3542;3543;3544 5598;5599;5600;5601;5602;5603;5604 5598 7 AVANYDSVEEGEK AADKVVEEIRRRGGKAVANYDSVEEGEKVV GKAVANYDSVEEGEKVVKTALDAFGRIDVV K A V E K V 2 0 1 1 0 0 3 1 0 0 0 1 0 0 0 1 0 0 1 2 0 0 13 0 1409.6311 E7EWE5;B4DSD0;B4DDM5;B2R659;A0A0S2Z4J1;P51659;E7ER27 E7EWE5 45 57 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 0.0020461 55.353 2 0.92801 0.9208 NaN 1 Median 0.92801 0.9208 NaN 1 0 Median NaN NaN NaN 0 0 Median 8105600 5008800 3096800 8105600 5008800 3096800 0 0 0 1299 563 1336 3545;3546 5605;5606 5606 2 AVAQALEVIPR EKSKAMTGVEQWPYRAVAQALEVIPRTLIQ WPYRAVAQALEVIPRTLIQNCGASTIRLLT R A V P R T 3 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 0 2 0 0 11 0 1165.6819 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368 B4DUR8 394 404 CCT3 T-complex protein 1 subunit gamma yes no 2 0.01831 49.06 2 1.5644 1.3789 NaN 1 Median NaN NaN NaN 0 0 Median 1.5644 1.3789 NaN 1 0 Median 2126900 578630 1548300 0 0 0 2126900 578630 1548300 1300 951 1337 3547;3548 5607;5608 5607 2 AVASQLDCNFLK LLYGPPGTGKTLLARAVASQLDCNFLKVVS LARAVASQLDCNFLKVVSSSIVDKYIGESA R A V L K V 2 0 1 1 1 1 0 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1364.6758 V9HW24;A0A087X2I1;P62333;H0YJC0;B4DR91;H0YJS8 V9HW24 186 197 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 1.8589E-05 101.54 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27898000 0 27898000 27898000 0 27898000 0 0 0 1301 454 1338 3549;3550 5609;5610 5610 2 AVATWHANTER EYHRSVAGKIQKLSKAVATWHANTEREQKK KLSKAVATWHANTEREQKKETERIEKERMR K A V E R E 3 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 2 1 0 1 0 0 11 0 1254.6105 P51531;A0A0U1RQZ9;F6VDE0;B4DK35 P51531 479 489 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.012268 56.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6534400 6534400 0 6534400 6534400 0 0 0 0 1302 1595 1339 3551 5611 5611 1 AVATYHANTER EYHRSVTGKIQKLTKAVATYHANTEREQKK KLTKAVATYHANTEREQKKENERIEKERMR K A V E R E 3 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 2 0 1 1 0 0 11 0 1231.5945 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;A5D6X0 A7E2E1 503 513 SMARCA4 Transcription activator BRG1 yes no 2;3 1.3217E-12 144.77 2 0.72548 0.74777 1.5872 2 Median 0.72548 0.74777 1.5872 2 0 Median NaN NaN NaN 0 0 Median 47054000 28099000 18955000 47054000 28099000 18955000 0 0 0 1303 695 1340 3552;3553 5612;5613;5614;5615 5614 4 AVAVDSTGTYMATSGLDHQLK KEPLAKILCHRGGVRAVAVDSTGTYMATSG TGTYMATSGLDHQLKIFDLRGTYQPLSTRT R A V L K I 3 0 0 2 0 1 0 2 1 0 2 1 1 0 0 2 3 0 1 2 0 0 21 0 2164.047 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 364 384 C6orf11;WDR46 WD repeat-containing protein 46 yes no 3 3.3641E-16 107.45 1 4 1.3389 1.0912 46.27 5 Median 1.5131 1.7068 NaN 1 0 Median 0.99574 0.81255 38.015 4 0 Median 100360000 45239000 55117000 63012000 26094000 36919000 37344000 19145000 18199000 1304 809 1341;1342 3554;3555;3556;3557;3558 5616;5617;5618;5619;5620;5621;5622;5623;5624 5617 647 9 AVCMLSNTTAIAEAWAR PPTVVPGGDLAKVQRAVCMLSNTTAIAEAW CMLSNTTAIAEAWARLDHKFDLMYAKRAFV R A V A R L 5 1 1 0 1 0 1 0 0 1 1 0 1 0 0 1 2 1 0 1 0 0 17 0 1863.8971 B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;B4DN58;Q15670;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 339 355 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2 1.3182E-13 111.94 1 2 1.3096 1.1068 12.35 2 Median NaN NaN NaN 0 0 Median 1.3096 1.1068 12.35 2 0 Median 26342000 20614000 5728400 16022000 16022000 0 10321000 4592300 5728400 1305 922;1659;1869 1343;1344 3559;3560;3561 5625;5626;5627;5628;5629 5625 755 5 AVCMLSNTTAVAEAWAR PPTVVPGGDLAKVQRAVCMLSNTTAVAEAW CMLSNTTAVAEAWARLDHKFDLMYAKRAFV R A V A R L 5 1 1 0 1 0 1 0 0 0 1 0 1 0 0 1 2 1 0 2 0 0 17 0 1849.8815 Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532 Q53GA7 374 390 TUBA1C Tubulin alpha-1C chain yes no 2 5.3595E-27 134.99 6 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18078000 18078000 0 18078000 18078000 0 0 0 0 1306 1257 1345 3562;3563;3564;3565;3566;3567 5630;5631;5632;5633;5634;5635;5636;5637 5632 961 8 AVDALLTHCK APTARKQLDKEQVRKAVDALLTHCKSRKNN EQVRKAVDALLTHCKSRKNNYGLLLNENES K A V C K S 2 0 0 1 1 0 0 0 1 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1126.5805 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9;I3L3C4;I3L1A3 O76021 39 48 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 4.0841E-12 145.72 4 2 0.61951 0.63481 10.65 6 Median 0.58699 0.677 8.8824 4 0 Median 0.71714 0.58694 9.2048 2 0 Median 1067100000 664830000 402310000 993720000 621510000 372210000 73414000 43314000 30100000 1307 1415 1346 3568;3569;3570;3571;3572;3573 5638;5639;5640;5641;5642;5643;5644;5645;5646 5639 9 AVDDGVNTFK VLRGSTDNLMDDIERAVDDGVNTFKVLTRD DDIERAVDDGVNTFKVLTRDKRLVPGGGAT R A V F K V 1 0 1 2 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 2 0 0 10 0 1064.5138 Q7Z759;Q53HU0;P50990 Q7Z759 340 349 CCT8 T-complex protein 1 subunit theta yes no 2 1.2241E-05 103.55 1 4.294 4.7653 NaN 1 Median 4.294 4.7653 NaN 1 0 Median NaN NaN NaN 0 0 Median 48671000 10729000 37942000 48671000 10729000 37942000 0 0 0 1308 1592 1347 3574 5647 5647 1 AVDEAADALLK AQWRTVEGALKERRKAVDEAADALLKAKEE ERRKAVDEAADALLKAKEELEKMKSVIENA K A V L K A 4 0 0 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1114.587 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20;Q05DN3 Q16891 287 297 IMMT MICOS complex subunit MIC60 no no 2 7.1644E-08 108.43 2 0.87118 0.98788 NaN 1 Median 0.87118 0.98788 NaN 1 0 Median NaN NaN NaN 0 0 Median 125240000 46615000 78624000 125240000 46615000 78624000 0 0 0 1309 1774;1029;1128 1348 3575;3576 5648;5649 5649 2 AVDFAER FRAHVKHRKGAARLRAVDFAERHGYIKGIV RKGAARLRAVDFAERHGYIKGIVKDIIHDP R A V E R H 2 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 806.39227 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1;E9PP36 P62917 31 37 RPL8 60S ribosomal protein L8 yes no 2 0.027041 86.086 1 2 0.87184 0.98085 13.356 3 Plateau 0.82583 0.98085 NaN 1 0 Median 0.89939 0.78206 3.8461 2 0 Median 1174000000 631250000 542780000 919990000 497840000 422150000 254040000 133410000 120630000 1310 1653 1349 3577;3578;3579 5650;5651;5652;5653;5654;5655 5651 6 AVDIPHMDIEALK SVCVLGDQQHCDEAKAVDIPHMDIEALKKL AKAVDIPHMDIEALKKLNKNKKLVKKLAKK K A V L K K 2 0 0 2 0 0 1 0 1 2 1 1 1 0 1 0 0 0 0 1 0 0 13 0 1450.749 P62906;Q1JQ76 P62906 79 91 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2;3 2.4887E-09 120.06 4 3 1.286 1.0058 34.941 7 Median 0.98427 1.0151 48.744 4 0 Median 1.286 1.0058 9.3614 3 0 Median 162850000 85834000 77012000 130710000 71054000 59656000 32135000 14779000 17355000 1311 1651 1350;1351 3580;3581;3582;3583;3584;3585;3586 5656;5657;5658;5659;5660;5661;5662;5663;5664;5665;5666;5667 5658 1429 12 AVDITTPK DTDHEEKASNEDVTKAVDITTPKAARRGRK SNEDVTKAVDITTPKAARRGRKRKAEKQVE K A V P K A 1 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 2 0 0 1 0 0 8 0 843.47018 O75475;Q05CM9 O75475 136 143 PSIP1 PC4 and SFRS1-interacting protein yes no 2 0.0395 47.574 1 0.69965 0.78227 NaN 1 Median 0.69965 0.78227 NaN 1 0 Median NaN NaN NaN 0 0 Median 86693000 52689000 34004000 86693000 52689000 34004000 0 0 0 1312 1405 1352 3587 5668 5668 1 AVDPEDDFQR IGGSEAPAPQNKDQKAVDPEDDFQREMSFY NKDQKAVDPEDDFQREMSFYRQAQAAVLAV K A V Q R E 1 1 0 3 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 10 0 1190.5204 Q6IB29;H7C2Q8;Q99848;B4DHA6 Q6IB29 95 104 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 5.4663E-08 114.89 2 2 0.93932 1.0393 11.014 4 Linear 0.877 1.0277 4.8461 2 0 Median 0.98668 0.85517 1.607 2 0 Median 808510000 433990000 374510000 693360000 375550000 317810000 115150000 58448000 56701000 1313 1316 1353 3588;3589;3590;3591 5669;5670;5671;5672;5673;5674;5675 5669 7 AVDPGLPSVK AVLTSPVLVPGCPSKAVDPGLPSVKQEPPD GCPSKAVDPGLPSVKQEPPDPEEDKEENKD K A V V K Q 1 0 0 1 0 0 0 1 0 0 1 1 0 0 2 1 0 0 0 2 0 0 10 0 981.5495 A0A0A0MS90;A8K654;B4DI41;Q9UIS9;K7EN65 A0A0A0MS90 498 507 MBD1 Methyl-CpG-binding domain protein 1 yes no 2 0.04172 38.086 1 1.9025 1.6306 NaN 1 Median NaN NaN NaN 0 0 Median 1.9025 1.6306 NaN 1 0 Median 1127500 426330 701140 0 0 0 1127500 426330 701140 1314 477 1354 3592 5676 5676 1 AVDPSSVALVTLGSSK HLSAKITIAAYLPLKAVDPSSVALVTLGSS VDPSSVALVTLGSSKEMLFEGGPRPWILEP K A V S K E 2 0 0 1 0 0 0 1 0 0 2 1 0 0 1 4 1 0 0 3 0 0 16 0 1529.8301 Q8TEM1 Q8TEM1 645 660 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 3.1971E-06 89.959 1 2 0.9014 0.80276 39.354 2 Median 1.0378 1.0603 NaN 1 0 Median 0.78294 0.60776 NaN 1 0 Median 33890000 18162000 15728000 28282000 13985000 14297000 5607800 4176700 1431100 1315 1937 1355 3593;3594;3595 5677;5678;5679;5680 5677 4 AVDPTSGQLYGLAR LGRVKGRTGLRVVVKAVDPTSGQLYGLARE KAVDPTSGQLYGLARELSDEIQVQVFEKLQ K A V A R E 2 1 0 1 0 1 0 2 0 0 2 0 0 0 1 1 1 0 1 1 0 0 14 0 1446.7467 Q8TEM1 Q8TEM1 1259 1272 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.002192 80.763 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13002000 13002000 0 11691000 11691000 0 1311100 1311100 0 1316 1937 1356 3596;3597 5681;5682 5681 2 AVDQHNAEAQDIFGK TKDVSGLHSKLDRKKAVDQHNAEAQDIFGK AVDQHNAEAQDIFGKNLNSLFNNMEELIKD K A V G K N 3 0 1 2 0 2 1 1 1 1 0 1 0 1 0 0 0 0 0 1 0 0 15 0 1641.7747 P52732;B2RAM6 P52732 522 536 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2;3 5.3951E-06 92.151 5 2.5306 2.5426 10.779 2 Median 2.5306 2.5426 10.779 2 0 Median NaN NaN NaN 0 0 Median 43304000 11167000 32137000 43304000 11167000 32137000 0 0 0 1317 1602 1357 3598;3599;3600;3601;3602 5683;5684;5685;5686;5687;5688 5687 6 AVDSLVPIGR IPRISVREPMQTGIKAVDSLVPIGRGQREL QTGIKAVDSLVPIGRGQRELIIGDRQTGKT K A V G R G 1 1 0 1 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 2 0 0 10 0 1025.5869 V9HW26;P25705;K7ERX7;B4DGW3;K7EK77;K7ENJ4 V9HW26 195 204 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.00089646 79.474 1 1.396 1.4641 NaN 1 Median 1.396 1.4641 NaN 1 0 Median NaN NaN NaN 0 0 Median 12178000 4713000 7465500 12178000 4713000 7465500 0 0 0 1318 1518 1358 3603 5689 5689 1 AVDSQILPK KEKYEITEQRKIDQKAVDSQILPKIKAIPQ RKIDQKAVDSQILPKIKAIPQLQGYLRSVF K A V P K I 1 0 0 1 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 969.5495 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 252 260 RPL6 60S ribosomal protein L6 yes no 2 0.00033401 101.72 2 2 0.9775 1.1705 30.173 4 Linear 0.9715 1.1522 3.2879 2 0 Median 0.82167 0.6841 1.7639 2 0 Median 1443500000 712160000 731380000 1356800000 665230000 691590000 86724000 46932000 39792000 1319 342 1359 3604;3605;3606;3607 5690;5691;5692;5693;5694;5695;5696;5697;5698 5696 9 AVDTLAYLSDGDAR SSNSSSEPAMFIEDKAVDTLAYLSDGDARA KAVDTLAYLSDGDARAGLNGLQLAVLARLS K A V A R A 3 1 0 3 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 1 0 0 14 0 1465.7049 Q96S55;B3KT25 Q96S55 428 441 WRNIP1 ATPase WRNIP1 yes no 2 0.045486 26.753 1 0.66465 0.58028 NaN 1 Median NaN NaN NaN 0 0 Median 0.66465 0.58028 NaN 1 0 Median 1876800 1063400 813470 0 0 0 1876800 1063400 813470 1320 1987 1360 3608 5699 5699 1 AVDVGAFLR SVQRPGLARRPPARRAVDVGAFLRDLRDTS RPPARRAVDVGAFLRDLRDTSLAPPNIVLE R A V L R D 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 946.52362 H3BTR4;B3KPB2;Q96BT3;H3BUW2;A8K662;B4DMP9 H3BTR4 216 224 CENPT Centromere protein T yes no 2 0.019957 58.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8769300 8769300 0 8769300 8769300 0 0 0 0 1321 920 1361 3609 5700 5700 1 AVEEGLTYK SSASGPAQSVAKMFRAVEEGLTYKFHAAWS VAKMFRAVEEGLTYKFHAAWSSVLQLLCVF R A V Y K F 1 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 0 1008.5128 B3KMR5;Q5JTH9;B3KY97 B3KMR5 474 482 RRP12 RRP12-like protein yes no 2 0.0066845 63.565 2 2 1.3984 1.3228 1.1179 2 Median 1.2119 1.3333 NaN 1 0 Median 1.6136 1.3124 NaN 1 0 Median 63420000 21530000 41890000 58901000 19682000 39219000 4518200 1847700 2670500 1322 907 1362 3610;3611;3612;3613 5701;5702;5703;5704 5704 4 AVEIVTSTSAAK KVSASTLKRDADASKAVEIVTSTSAAKTGQ ASKAVEIVTSTSAAKTGQAKASVAKVNKST K A V A K T 3 0 0 0 0 0 1 0 0 1 0 1 0 0 0 2 2 0 0 2 0 0 12 0 1175.6398 Q14966;D6W5H1;A8K583;B4E187 Q14966 783 794 ZNF638 Zinc finger protein 638 yes no 2 0.00056919 78.655 3 0.64008 0.65517 NaN 1 Median 0.64008 0.65517 NaN 1 0 Median NaN NaN NaN 0 0 Median 28356000 9869400 18486000 28356000 9869400 18486000 0 0 0 1323 1746 1363 3614;3615;3616 5705;5706;5707 5707 3 AVELASLQNAK RRASQEANLLTLAQKAVELASLQNAKDGSG LAQKAVELASLQNAKDGSGSEEKRKSVLAS K A V A K D 3 0 1 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1142.6295 A0A1C7CYX1;A0A0A0MSU2;A0PJD3;A0A024R689;Q6PJG2;H7C1L3 A0A1C7CYX1 473 483 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 2 0.046979 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 625330 0 625330 0 0 0 625330 0 625330 1324 638 1364 3617 5708 5708 1 AVESGQLVSVHEK MVLDKPSPKTIAFVKAVESGQLVSVHEKES VKAVESGQLVSVHEKESIKHLKEEQGLVKN K A V E K E 1 0 0 0 0 1 2 1 1 0 1 1 0 0 0 2 0 0 0 3 0 0 13 0 1381.7201 Q9BRU9 Q9BRU9 160 172 UTP23 rRNA-processing protein UTP23 homolog yes yes 2;3 0.00014341 92.247 2 1 0.98081 0.77256 NaN 1 Median NaN NaN NaN 0 0 Median 0.98081 0.77256 NaN 1 0 Median 11473000 8543800 2928900 5788600 5788600 0 5684100 2755300 2928900 1325 1999 1365 3618;3619;3620 5709;5710;5711 5710 3 AVESGVPQPPDPPVQRDEEEEK ______________________________ QPPDPPVQRDEEEEKEVENEDEDDDDSDKE R A V E K E 1 1 0 2 0 2 5 1 0 0 0 1 0 0 5 1 0 0 0 3 0 0 22 1 2431.1503 Q9P287;B4E318;B4DUS0 Q9P287 9 30 BCCIP BRCA2 and CDKN1A-interacting protein yes no 3 0.056478 13.188 2 2.3321 2.0255 4.0586 2 Median NaN NaN NaN 0 0 Median 2.3321 2.0255 4.0586 2 0 Median 4444800 1595300 2849500 0 0 0 4444800 1595300 2849500 1326 2094 1366 3621;3622 5712;5713 5712 2 AVESIQAEDESAK LLDGVVEKLSVLKRKAVESIQAEDESAKLC RKAVESIQAEDESAKLCKRRIEHLKEHSSD K A V A K L 3 0 0 1 0 1 3 0 0 1 0 1 0 0 0 2 0 0 0 1 0 0 13 0 1375.6467 D6RID6;D6RDW4;D6REW7;D3DVP6;D6RIB6;D3DVP3;B4DQT1;B4DUB2;D3DVP1;B4DVN3;E7ESC7;Q7L5Y9 D6RID6 37 49 MAEA Macrophage erythroblast attacher yes no 2 0.0057449 56.548 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1904000 0 1904000 1904000 0 1904000 0 0 0 1327 1025 1367 3623 5714 5714 1 AVETLQAGQDGPGSQVDTLLR QPDMEGLEARRQQEKAVETLQAGQDGPGSQ AGQDGPGSQVDTLLRGVDSLLYRRGPGPLT K A V L R G 2 1 0 2 0 3 1 3 0 0 3 0 0 0 1 1 2 0 0 2 0 0 21 0 2154.0917 Q4VC44;I3L188;J3KNW1;B3KRZ0 Q4VC44 347 367 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 1.21E-58 170.11 2 2 1.1732 1.084 4.3192 4 Median 0.98403 1.0415 5.5023 2 0 Median 1.3051 1.0942 1.1755 2 0 Median 106780000 57487000 49289000 66078000 39959000 26119000 40699000 17528000 23171000 1328 1781 1368 3624;3625;3626;3627 5715;5716;5717;5718;5719;5720;5721;5722 5717 8 AVEVQGPSLESGDHGK VQVPAVDISSSLGGRAVEVQGPSLESGDHG VEVQGPSLESGDHGKIKFPTMKVPKFGVST R A V G K I 1 0 0 1 0 1 2 3 1 0 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1608.7744 Q09666;B4DTV0 Q09666 288 303 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 1.0548E-06 113.99 2 1.8635 1.8965 NaN 1 Median 1.8635 1.8965 NaN 1 0 Median NaN NaN NaN 0 0 Median 30518000 8984700 21533000 30518000 8984700 21533000 0 0 0 1329 1696 1369 3628;3629 5723;5724 5724 2 AVEYLLMGIPGDR QVIAALRASFNNPDRAVEYLLMGIPGDRES DRAVEYLLMGIPGDRESQAVVDPPQAASTG R A V D R E 1 1 0 1 0 0 1 2 0 1 2 0 1 0 1 0 0 0 1 1 0 0 13 0 1432.7384 P54727;B4DEA3;B7Z4W4;B7ZA74 P54727 221 233 RAD23B UV excision repair protein RAD23 homolog B yes no 2 3.1995E-05 95.401 1 0.76763 0.79522 NaN 1 Median 0.76763 0.79522 NaN 1 0 Median NaN NaN NaN 0 0 Median 21813000 11495000 10318000 21813000 11495000 10318000 0 0 0 1330 1610 1370 3630 5725;5726 5725 1397 2 AVFDETYPDPVR QDCPLAAAKAIQGLRAVFDETYPDPVRVVS GLRAVFDETYPDPVRVVSIGVPVSELLDDP R A V V R V 1 1 0 2 0 0 1 0 0 0 0 0 0 1 2 0 1 0 1 2 0 0 12 0 1407.667 P49588;H3BPK7 P49588 684 695 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.00034875 89.913 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28007000 0 28007000 28007000 0 28007000 0 0 0 1331 1583 1371 3631;3632 5727;5728 5728 2 AVFPLLYVR CRDLGLKDSVLAGLKAVFPLLYVRRIEGEV VLAGLKAVFPLLYVRRIEGEVNEILFCQLH K A V V R R 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 1 2 0 0 9 0 1076.6383 B3KNM8;B4E2X3;C4B4C6;Q8N6R0 B3KNM8 546 554 feat;METTL13 Methyltransferase-like protein 13 yes no 2 0.015109 62.717 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2011400 0 2011400 2011400 0 2011400 0 0 0 1332 915 1372 3633;3634 5729;5730 5729 2 AVFPSIVGR SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV GDDAPRAVFPSIVGRPRHQGVMVGMGQKDS R A V G R P 1 1 0 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 2 0 0 9 0 944.54435 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q7Z7J6;A6NL76;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;C9JUM1;F8WCH0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;G5E9R0;E7EVS6;C9JTX5;C9JZR7;Q6S8J3;A5A3E0;P0CG38;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282 P63261 29 37 ACTA2;ACTG2;ACTA1;ACTC1;ACTB;PS1TP5BP1;POTEE;POTEF;POTEI;ACTG1 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 1.5452E-05 122.13 2 2 2.1769 2.2083 1.3366 4 Median 1.8505 2.204 0.70978 2 0 Median 2.5662 2.2305 1.8517 2 0 Median 5731900000 1922600000 3809400000 5492300000 1857800000 3634500000 239660000 64833000 174820000 1333 1624;1656;1100 1373 3635;3636;3637;3638 5731;5732;5733;5734;5735;5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749;5750 5740 20 AVFPSIVGRPR SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV R A V P R H 1 2 0 0 0 0 0 1 0 1 0 0 0 1 2 1 0 0 0 2 0 0 11 1 1197.6982 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q7Z7J6;A6NL76;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;C9JUM1;F8WCH0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;G5E9R0;E7EVS6;C9JTX5;C9JZR7;Q6S8J3;A5A3E0;P0CG38;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282 P63261 29 39 ACTA2;ACTG2;ACTA1;ACTC1;ACTB;PS1TP5BP1;POTEE;POTEF;POTEI;ACTG1 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 2.6079E-07 124.08 5 4 2.4515 2.3476 8.0799 8 Median 2.0371 2.3476 4.6358 4 0 Median 2.9305 2.4782 10.574 4 0 Linear 4919400000 1512500000 3407000000 4288700000 1360500000 2928300000 630700000 152000000 478700000 1334 1624;1656;1100 1374 3639;3640;3641;3642;3643;3644;3645;3646;3647 5751;5752;5753;5754;5755;5756;5757;5758;5759;5760;5761;5762;5763;5764;5765;5766;5767;5768 5762 18 AVFQESIR SQMVEMEEQVVEDHRAVFQESIRWLEDEKA QVVEDHRAVFQESIRWLEDEKALLEMTEEV R A V I R W 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 8 0 948.50288 B0AZS5;O00139;B4DM85 B0AZS5 584 591 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 0.031214 51.43 1 1.4533 1.5769 NaN 1 Median 1.4533 1.5769 NaN 1 0 Median NaN NaN NaN 0 0 Median 49988000 21231000 28756000 49988000 21231000 28756000 0 0 0 1335 804 1375 3648 5769 5769 1 AVFVDLEPTVIDEIR TTFFCETGAGKHVPRAVFVDLEPTVIDEIR AVFVDLEPTVIDEIRNGPYRQLFHPEQLIT R A V I R N 1 1 0 2 0 0 2 0 0 2 1 0 0 1 1 0 1 0 0 3 0 0 15 0 1714.9142 P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366 65 79 TUBA4A Tubulin alpha-4A chain yes no 2 9.7194E-23 131.17 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120840000 14661000 106180000 106180000 0 106180000 14661000 14661000 0 1336 1659 1376 3649;3650;3651 5770;5771;5772 5770 3 AVFVDLEPTVIDEVR NTFFSETGAGKHVPRAVFVDLEPTVIDEVR AVFVDLEPTVIDEVRTGTYRQLFHPEQLIT R A V V R T 1 1 0 2 0 0 2 0 0 1 1 0 0 1 1 0 1 0 0 4 0 0 15 0 1700.8985 B3KT06;B3KPS3;P68363;A8JZY9;F8VVB9;B4DN58;F8VRZ4;F8VS66;F8VX09;F8VWV9;F8VRK0;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;Q71U36;F8VQQ4 B3KT06 30 44 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain no no 2 2.4056E-38 205.56 4 2 1.4294 1.4668 22.289 6 Median 1.5183 1.6916 13.682 4 0 Median 1.2787 1.1127 1.7155 2 0 Median 3770600000 1528800000 2241800000 3449700000 1386200000 2063500000 320810000 142590000 178220000 1337 922;1257;1869 1377 3652;3653;3654;3655;3656;3657 5773;5774;5775;5776;5777;5778;5779;5780;5781;5782;5783;5784;5785;5786;5787;5788;5789 5782 17 AVFWDIK DARMRLMKHDVNLGRAVFWDIKNRLPRSVT KHDVNLGRAVFWDIKNRLPRSVTTVQWENS R A V I K N 1 0 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 7 0 877.46979 Q6P2Q9 Q6P2Q9 1152 1158 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.041494 58.981 1 0.60767 0.62587 NaN 1 Median 0.60767 0.62587 NaN 1 0 Median NaN NaN NaN 0 0 Median 18114000 10947000 7167400 18114000 10947000 7167400 0 0 0 1338 1854 1378 3658 5790 5790 1 AVGASFPLYEPAK KGKGRDVESVQTPSKAVGASFPLYEPAKMK SKAVGASFPLYEPAKMKTPVQYSQQQNSPQ K A V A K M 3 0 0 0 0 0 1 1 0 0 1 1 0 1 2 1 0 0 1 1 0 0 13 0 1348.7027 P46013 P46013 332 344 MKI67 Antigen KI-67 yes yes 2 2.859E-13 125.74 2 2 2.5709 2.4531 26.534 4 Median 1.7456 1.9563 0.93437 2 0 Median 3.7676 3.0961 1.8534 2 0 Median 221370000 67677000 153690000 154620000 53513000 101110000 66747000 14163000 52584000 1339 1569 1379 3659;3660;3661;3662 5791;5792;5793;5794;5795;5796;5797;5798;5799;5800 5793 10 AVGHPFVIQLGR KQLGSILKTNVRACKAVGHPFVIQLGRIYL ACKAVGHPFVIQLGRIYLDMLNVYKCLSEN K A V G R I 1 1 0 0 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 2 0 0 12 0 1292.7353 O14980;B3KWD0;B7ZB16;B4DR01 O14980 701 712 XPO1 Exportin-1 yes no 3 0.0010836 65.5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13074000 0 13074000 13074000 0 13074000 0 0 0 1340 1371 1380 3663;3664 5801;5802 5802 2 AVGIWHCGSCMK KYTCSFCGKTKMKRRAVGIWHCGSCMKTVA KRRAVGIWHCGSCMKTVAGGAWTYNTTSAV R A V M K T 1 0 0 0 2 0 0 2 1 1 0 1 1 0 0 1 0 1 0 1 0 0 12 0 1404.6101 C9J4Z3;P61513;M0R0A1;Q6P4E4;E9PEL3;M0R2L6 C9J4Z3 27 38 RPL37A 60S ribosomal protein L37a yes no 2 0.00041741 64.711 2 2 0.76814 0.64955 26.75 3 Median 0.76814 0.80095 NaN 1 0 Median 0.67013 0.55308 22.738 2 0 Median 25201000 13790000 11410000 19142000 10101000 9040700 6058600 3689100 2369500 1341 1129 1381;1382 3665;3666;3667;3668 5803;5804;5805;5806 5804 848 4 AVGTFAR PLTDRQIDQFLVVARAVGTFARALDCSSSI DQFLVVARAVGTFARALDCSSSIRQPSLHM R A V A R A 2 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 7 0 720.39187 A0A024R534;O94776;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8 A0A024R534 199 205 MTA2;MTA3;tmp_locus_6 Metastasis-associated protein MTA2;Metastasis-associated protein MTA3 no no 2 0.015104 99.384 1 0.93497 1.0502 NaN 1 Median 0.93497 1.0502 NaN 1 0 Median NaN NaN NaN 0 0 Median 93759000 44535000 49224000 93759000 44535000 49224000 0 0 0 1342 168;1221 1383 3669 5807 5807 1 AVHEQLAALSQGPISK EERAHRLAELQEQLRAVHEQLAALSQGPIS VHEQLAALSQGPISKPKRKREKKEKKKKRK R A V S K P 3 0 0 0 0 2 1 1 1 1 2 1 0 0 1 2 0 0 0 1 0 0 16 0 1647.8944 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A0G2JHN8;A0A140T9I1;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7 A0A024RCR5 529 544 BRD2 Bromodomain-containing protein 2 yes no 3 0.042926 26.075 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1224800 1224800 0 0 0 0 1224800 1224800 0 1343 367 1384 3670 5808 5808 1 AVIDLNNR GNVYVKFRREEDAEKAVIDLNNRWFNGQPI REEDAEKAVIDLNNRWFNGQPIHAELSPVT K A V N R W 1 1 2 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 913.49813 P0DN76;Q01081;Q7Z780;B5BU08 P0DN76 126 133 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2 0.0055644 83.364 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1344 1463 1385 3671 5809 5809 1 AVIGIGIEEEDRK CDRAGSVATCQAVMRAVIGIGIEEEDRKHT MRAVIGIGIEEEDRKHTWMEDADSCVAHNA R A V R K H 1 1 0 1 0 0 3 2 0 3 0 1 0 0 0 0 0 0 0 1 0 0 13 1 1427.762 O94906 O94906 528 540 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.052352 26.124 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3162200 3162200 0 3162200 3162200 0 0 0 0 1345 1418 1386 3672 5810 5810 1 AVISLQSYFR VRGYLVRKQMRLQRKAVISLQSYFRMRKAR RLQRKAVISLQSYFRMRKARQYYLKMYKAI K A V F R M 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 2 0 0 1 1 0 0 10 0 1182.6397 Q8IZT6 Q8IZT6 1754 1763 ASPM Abnormal spindle-like microcephaly-associated protein yes yes 2 0.048381 47.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1464700 1464700 0 1464700 1464700 0 0 0 0 1346 1902 1387 3673 5811 5811 1 AVITPDFEK LTQIKEKKKNELLQKAVITPDFEKNHCVPP NELLQKAVITPDFEKNHCVPPYSESKYQLQ K A V E K N 1 0 0 1 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 9 0 1018.5335 Q5QJE6 Q5QJE6 607 615 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.0016071 83.206 2 2 1.1441 1.0938 10.278 4 Median 0.87699 0.98726 8.3734 2 0 Median 1.4424 1.1544 1.4959 2 0 Median 223020000 114580000 108440000 197500000 104420000 93084000 25514000 10161000 15353000 1347 1813 1388 3674;3675;3676;3677 5812;5813;5814;5815;5816;5817;5818;5819 5817 8 AVIWPQYVK YYGLGLSNEIGAIEKAVIWPQYVKDRIHST IGAIEKAVIWPQYVKDRIHSTYMYLAGSIG K A V V K D 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 1 1 2 0 0 9 0 1102.6175 B4DSV8;B4DPG9;Q9H3K2;Q9Y6G2;Q9P099 B4DSV8 100 108 GHITM Growth hormone-inducible transmembrane protein yes no 2 0.052654 45.718 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1348 1021 1389 3678 5820 5820 1 AVKDELLSEKPEVK YFKKHEKRMSKEEERAVKDELLSEKPEVKQ RAVKDELLSEKPEVKQKWASRLLAKLRKDI R A V V K Q 1 0 0 1 0 0 3 0 0 0 2 3 0 0 1 1 0 0 0 2 0 0 14 2 1583.877 B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857;S4R3K4 B1AKN6 55 68 NFIA Nuclear factor 1;Nuclear factor 1 A-type yes no 3 0.0609 23.419 1 0.84585 0.83657 NaN 1 Median NaN NaN NaN 0 0 Median 0.84585 0.83657 NaN 1 0 Median 1711100 946080 765060 0 0 0 1711100 946080 765060 1349 816 1390 3679 5821 5821 1 AVLALGGSLAGSAAEASHLVTDR PKVLFTGVVDARGERAVLALGGSLAGSAAE LAGSAAEASHLVTDRIRRTVKFLCALGRGI R A V D R I 6 1 0 1 0 0 1 3 1 0 4 0 0 0 0 3 1 0 0 2 0 0 23 0 2165.144 Q14676;B4DYH4 Q14676 1908 1930 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 2.0533E-30 133.38 2 2 0.75103 0.71192 14.309 4 Median 0.7149 0.72954 14.201 2 0 Median 0.80408 0.6732 18.655 2 0 Median 74130000 42534000 31596000 39652000 22704000 16947000 34479000 19830000 14649000 1350 1738 1391 3680;3681;3682;3683 5822;5823;5824;5825;5826;5827;5828;5829;5830;5831;5832;5833 5825 12 AVLDLESERR DEGHAIRNPNAQQTKAVLDLESERRWVLTG AQQTKAVLDLESERRWVLTGTPIQNSLKDL K A V R R W 1 2 0 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 1 1186.6306 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;H7C5K0 Q59GQ7 572 581 HLTF Helicase-like transcription factor yes no 3 2.9809E-05 82.417 2 0.57469 0.63253 NaN 1 Median 0.57469 0.63253 NaN 1 0 Median NaN NaN NaN 0 0 Median 32672000 28450000 4221700 32672000 28450000 4221700 0 0 0 1351 512 1392 3684;3685 5834;5835 5835 2 AVLETIR YGQPVAAGDTPAPRRAVLETIRTYLTITDT GDTPAPRRAVLETIRTYLTITDTQLVNSLL R A V I R T 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 7 0 800.4756 B3KMR5;Q5JTH9;B3KY97;B0AZM4;A8K6F0;A0A024R9L1;O60306 B3KMR5 712 718 RRP12;AQR RRP12-like protein;Intron-binding protein aquarius no no 2 0.03754 60.799 1 1.1811 1.2024 NaN 1 Median 1.1811 1.2024 NaN 1 0 Median NaN NaN NaN 0 0 Median 29964000 14475000 15489000 29964000 14475000 15489000 0 0 0 1352 907;282 1393 3686 5836 5836 1 AVLFCLSEDK VRKSSTPEEVKKRKKAVLFCLSEDKKNIIL KKRKKAVLFCLSEDKKNIILEEGKEILVGD K A V D K K 1 0 0 1 1 0 1 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1180.5798 G3V1A4;V9HWI5;E9PK25;P23528;E9PP50;E9PLJ3;B4E112;E9PQB7;E9PS23 G3V1A4 18 27 CFL1;HEL-S-15 Cofilin-1 yes no 2 0.00022723 93.178 2 1 4.6591 5.07 34.014 3 Median 4.8379 5.2372 4.5887 2 0 Median 3.4841 2.9134 NaN 1 0 Median 87740000 16219000 71521000 86467000 15925000 70542000 1272800 294440 978410 1353 1242 1394 3687;3688;3689 5837;5838;5839 5838 3 AVLGEVVLYSGAR VTRWFVTCVRQPEFRAVLGEVVLYSGARPL FRAVLGEVVLYSGARPLSHQPGPEAPALPK R A V A R P 2 1 0 0 0 0 1 2 0 0 2 0 0 0 0 1 0 0 1 3 0 0 13 0 1332.7402 A0A024RCN6;P26640;A0A140T936;A0A140T954 A0A024RCN6 202 214 VARS Valine--tRNA ligase yes no 2 0.00019093 71.555 2 0.90692 0.91223 14.183 2 Median 0.90692 0.91223 14.183 2 0 Median NaN NaN NaN 0 0 Median 34196000 16513000 17683000 34196000 16513000 17683000 0 0 0 1354 363 1395 3690;3691 5840;5841 5841 1 AVLGPLVGAVDQGTSSTR ______________________________ GPLVGAVDQGTSSTRFLLLVSATRGKPL__ K A V T R F 2 1 0 1 0 1 0 3 0 0 2 0 0 0 1 2 2 0 0 3 0 0 18 0 1726.9214 F8WF44;F8WDA9;F8WBI8;F8WC39;A6NP46;A8K8B7;Q14409;P32189 F8WF44 7 24 GK;GK3P Putative glycerol kinase 3;Glycerol kinase yes no 2 0.00062353 56.951 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10675000 0 10675000 10675000 0 10675000 0 0 0 1355 690 1396 3692 5842 5842 1 AVLIAGQPGTGK GVVLEMIREGKIAGRAVLIAGQPGTGKTAI AGRAVLIAGQPGTGKTAIAMGMAQALGPDT R A V G K T 2 0 0 0 0 1 0 3 0 1 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1110.6397 Q9Y230;B3KNL2;M0R0Y3;B4DW30;X6R2L4;M0QXI6 Q9Y230 72 83 RUVBL2 RuvB-like 2 yes no 2 0.00098904 62.823 2 1.2634 1.0088 4.1414 2 Median NaN NaN NaN 0 0 Median 1.2634 1.0088 4.1414 2 0 Median 23629000 10969000 12661000 0 0 0 23629000 10969000 12661000 1356 2120 1397 3693;3694 5843;5844;5845 5845 3 AVLLAGPPGTGK GVIVELIKSKKMAGRAVLLAGPPGTGKTAL AGRAVLLAGPPGTGKTALALAIAQELGSKV R A V G K T 2 0 0 0 0 0 0 3 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1079.6339 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 65 76 RUVBL1 RuvB-like 1 yes no 2 0.00020607 85.731 2 2 1.1539 0.92745 0.54123 3 Median 0.81787 0.92745 NaN 1 0 Median 1.1556 0.92473 0.72689 2 0 Median 186990000 72047000 114950000 149580000 54137000 95447000 37411000 17910000 19501000 1357 1076 1398 3695;3696;3697;3698 5846;5847;5848;5849;5850;5851;5852 5849 7 AVLLDLEPR DVFFYQADDEHYIPRAVLLDLEPRVIHSIL EHYIPRAVLLDLEPRVIHSILNSPYAKLYN R A V P R V 1 1 0 1 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 9 0 1024.5917 A0A1B4Z394;Q9NRH3;P23258;K7EKE5;K7EIS0 A0A1B4Z394 64 72 TUBG2;TUBG1 Tubulin gamma-2 chain;Tubulin gamma-1 chain;Tubulin gamma chain yes no 2 0.0074258 61.999 1 1.2752 1.274 NaN 1 Median 1.2752 1.274 NaN 1 0 Median NaN NaN NaN 0 0 Median 8832100 3303400 5528700 8832100 3303400 5528700 0 0 0 1358 637 1399 3699 5853;5854 5854 2 AVLLQVICLYQK CDAHQCDDAETILLKAVLLQVICLYQKVVP LLKAVLLQVICLYQKVVPHVVMQYNFDFSK K A V Q K V 1 0 0 0 1 2 0 0 0 1 3 1 0 0 0 0 0 0 1 2 0 0 12 0 1446.8269 O60287 O60287 556 567 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0020128 71.501 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 594440 0 594440 0 0 0 594440 0 594440 1359 1392 1400 3700 5855 5855 1 AVLLVGLCDSGK LVFWKLIRSRRSSQRAVLLVGLCDSGKTLL SQRAVLLVGLCDSGKTLLFVRLLTGLYRDT R A V G K T 1 0 0 1 1 0 0 2 0 0 3 1 0 0 0 1 0 0 0 2 0 0 12 0 1230.6642 Q549N5;Q9Y5M8;C9J5Z8 Q549N5 66 77 SRPRB Signal recognition particle receptor subunit beta yes no 2 0.028809 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1360 1794 1401 3701 5856 5856 1 AVLMEKPDVVVGTPSR RVANVSAAEDSVSQRAVLMEKPDVVVGTPS VLMEKPDVVVGTPSRILSHLQQDSLKLRDS R A V S R I 1 1 0 1 0 0 1 1 0 0 1 1 1 0 2 1 1 0 0 4 0 0 16 1 1696.9182 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 129 144 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 9.3649E-06 75.463 4 1.1195 1.2938 7.9502 3 Median 1.1195 1.2938 7.9502 3 0 Median NaN NaN NaN 0 0 Median 126250000 57193000 69060000 126250000 57193000 69060000 0 0 0 1361 2081 1402 3702;3703;3704;3705 5857;5858;5859;5860 5860 1917 3 AVLPTPVTK KNAPKRDLSFLLDKKAVLPTPVTKPKLDSA FLLDKKAVLPTPVTKPKLDSAAYKSDDSSD K A V T K P 1 0 0 0 0 0 0 0 0 0 1 1 0 0 2 0 2 0 0 2 0 0 9 0 924.56442 O75151;Q8N359;B4DH04 O75151 712 720 PHF2 Lysine-specific demethylase PHF2 yes no 2 0.0074668 61.962 2 1.1648 1.1865 5.8953 2 Median 1.1648 1.1865 5.8953 2 0 Median NaN NaN NaN 0 0 Median 23847000 10256000 13591000 23847000 10256000 13591000 0 0 0 1362 1400 1403 3706;3707 5861;5862;5863 5861 3 AVLQALEVLPVAPPPEPR LILKQAAKPPISKKKAVLQALEVLPVAPPP QALEVLPVAPPPEPRSLTAEEVKRLEEQEE K A V P R S 3 1 0 0 0 1 2 0 0 0 3 0 0 0 5 0 0 0 0 3 0 0 18 0 1895.088 A0A024R9G7;Q6PL18;A0A0B4J211 A0A024R9G7 951 968 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 1.3259E-05 77.527 2 1.051 1.0569 2.6607 2 Median 1.051 1.0569 2.6607 2 0 Median NaN NaN NaN 0 0 Median 22044000 11053000 10991000 22044000 11053000 10991000 0 0 0 1363 278 1404 3708;3709 5864;5865;5866;5867;5868 5868 5 AVLQEEQANLWFSK EEEEENPLLVPLEEKAVLQEEQANLWFSKG KAVLQEEQANLWFSKGSFAGIEDDADEALE K A V S K G 2 0 1 0 0 2 2 0 0 0 2 1 0 1 0 1 0 1 0 1 0 0 14 0 1661.8413 Q8IY81;B4DKU3 Q8IY81 519 532 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 7.149E-25 144.1 2 3 1.1929 0.95585 NaN 1 Median NaN NaN NaN 0 0 Median 1.1929 0.95585 NaN 1 0 Median 49723000 19930000 29794000 18846000 0 18846000 30877000 19930000 10948000 1364 1898 1405 3710;3711;3712;3713;3714 5869;5870;5871;5872;5873;5874;5875;5876 5874 8 AVLQFTPASWTYVR ASFKDIHTTTGKIKRAVLQFTPASWTYVRW RAVLQFTPASWTYVRWFDPKSSFQRVAGVY R A V V R W 2 1 0 0 0 1 0 0 0 0 1 0 0 1 1 1 2 1 1 2 0 0 14 0 1637.8566 Q9BSY0;A8KAH1;P48651 Q9BSY0 121 134 PTDSS1 Phosphatidylserine synthase 1 yes no 2 0.0016848 51.927 1 0.81902 0.84994 NaN 1 Median 0.81902 0.84994 NaN 1 0 Median NaN NaN NaN 0 0 Median 5655800 3153500 2502300 5655800 3153500 2502300 0 0 0 1365 793 1406 3715 5877 5877 1 AVLQPSINEEIQTVFNK TTSFTDPAISMDLLRAVLQPSINEEIQTVF LQPSINEEIQTVFNKYMKFFQKAALNVRDN R A V N K Y 1 0 2 0 0 2 2 0 0 2 1 1 0 1 1 1 1 0 0 2 0 0 17 0 1929.0207 F2Z2A4;H0Y501;H7C1M5;Q9H147 F2Z2A4 32 48 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 yes no 2 0.004162 35.523 2 1.0387 0.83553 4.4165 2 Median NaN NaN NaN 0 0 Median 1.0387 0.83553 4.4165 2 0 Median 8924200 4573700 4350500 0 0 0 8924200 4573700 4350500 1366 1252 1407 3716;3717 5878;5879 5879 2 AVLREEDTSNTTFGPADLK EQCTLMAEMHVVLLKAVLREEDTSNTTFGP EEDTSNTTFGPADLKDSVNSTLYFIDGMTW K A V L K D 2 1 1 2 0 0 2 1 0 0 2 1 0 1 1 1 3 0 0 1 0 0 19 1 2063.0171 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 154 172 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.00029499 37.112 1 1 1.3611 1.324 39.577 2 Median 0.88869 1.0008 NaN 1 0 Median 2.0848 1.7516 NaN 1 0 Median 18547000 8764400 9782800 13826000 7471000 6355100 4721100 1293400 3427700 1367 1224 1408 3718;3719 5880;5881;5882 5881 3 AVLSCIAPSAK YATLIENDSNPEVRRAVLSCIAPSAKTLPK EVRRAVLSCIAPSAKTLPKIVGRTKDVKEA R A V A K T 3 0 0 0 1 0 0 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 11 0 1115.6009 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 198 208 NCAPG Condensin complex subunit 3 yes no 2 5.3076E-10 129.63 2 2 1.0796 1.0402 21.403 4 Median 0.76359 0.86281 1.1367 2 0 Median 1.5602 1.2497 0.64907 2 0 Median 177780000 93165000 84616000 151580000 83436000 68148000 26197000 9728300 16468000 1368 1995 1409 3720;3721;3722;3723 5883;5884;5885;5886;5887;5888;5889;5890;5891 5887 9 AVLTFALDSVER TLVLDPTSKQEKEARAVLTFALDSVERKLL EARAVLTFALDSVERKLLMSSTKGLYSDTE R A V E R K 2 1 0 1 0 0 1 0 0 0 2 0 0 1 0 1 1 0 0 2 0 0 12 0 1319.7085 Q9NQT4;M0R050;B2RC50 Q9NQT4 179 190 EXOSC5 Exosome complex component RRP46 yes no 2 4.6772E-06 110.53 1 2 0.82593 0.823 7.4104 3 Plateau 0.79485 0.823 NaN 1 0 Median 0.8799 0.73594 5.147 2 0 Median 40761000 21209000 19552000 23115000 11441000 11675000 17646000 9768800 7877500 1369 2060 1410 3724;3725;3726 5892;5893;5894;5895;5896 5893 5 AVLTVQEPPSFVK YTCVAANVAGSDECRAVLTVQEPPSFVKEP CRAVLTVQEPPSFVKEPEPLEVLPGKNVTF R A V V K E 1 0 0 0 0 1 1 0 0 0 1 1 0 1 2 1 1 0 0 3 0 0 13 0 1413.7868 C0JYZ2;D3DPG0;A0A0A0MTS7;Q8WZ42 C0JYZ2 5885 5897 TTN Titin yes no 2 0.015682 36.693 1 0.60719 0.61695 NaN 1 Median 0.60719 0.61695 NaN 1 0 Median NaN NaN NaN 0 0 Median 13743000 8474400 5268100 13743000 8474400 5268100 0 0 0 1370 489 1411 3727 5897;5898 5898 2 AVLVALK VPPPFLGLPRFEARKAVLVALKERGLFRGI LPRFEARKAVLVALKERGLFRGIEDNPMVV K A V L K E 2 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 7 0 712.48471 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 639 645 VARS Valine--tRNA ligase yes no 2 0.030029 69.39 2 1.0907 1.0879 4.2329 2 Median 1.0907 1.0879 4.2329 2 0 Median NaN NaN NaN 0 0 Median 16946000 8964700 7981600 16946000 8964700 7981600 0 0 0 1371 363 1412 3728;3729 5899;5900 5899 2 AVLVDLEPGTMDSVR NVYYNEATGGKYVPRAVLVDLEPGTMDSVR AVLVDLEPGTMDSVRSGPFGQIFRPDNFVF R A V V R S 1 1 0 2 0 0 1 1 0 0 2 0 1 0 1 1 1 0 0 3 0 0 15 0 1600.8131 Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;M0QY85;M0QZL7;B4DNW1;M0R0X0;M0QY37;M0QX14;A0A075B724;Q3ZCM7;A0A183YE00;P04350;B4DE77;B4DJ43;M0R278 Q8IZ29 63 77 TUBB2C;TUBB4B;TUBB4A;TUBB8 Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain no no 2 2.492E-15 125.97 4 1 2.341 2.6749 55.269 3 Median 2.341 2.6749 55.269 3 0 Median NaN NaN NaN 0 0 Median 269840000 80483000 189360000 265310000 75949000 189360000 4534000 4534000 0 1372 1660;1441;1778 1413;1414 3730;3731;3732;3733;3734 5901;5902;5903;5904;5905;5906;5907 5904 1141 7 AVMSNLSAHGVK DGNQYVREAADDCAKAVMSNLSAHGVKLVL CAKAVMSNLSAHGVKLVLPSLLAALEEESW K A V V K L 2 0 1 0 0 0 0 1 1 0 1 1 1 0 0 2 0 0 0 2 0 0 12 0 1212.6285 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1485 1496 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.00010295 90.108 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 987780 0 987780 987780 0 987780 0 0 0 1373 1205 1415 3735 5908 5908 913 1 AVNPFLADVDK AFEALGTALKVVGEKAVNPFLADVDKLKLD VGEKAVNPFLADVDKLKLDKIKECSEKVEL K A V D K L 2 0 1 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1187.6186 Q14008 Q14008 474 484 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00021707 79.974 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14445000 13135000 1309900 13135000 13135000 0 1309900 0 1309900 1374 1725 1416 3736;3737;3738 5909;5910;5911 5910 3 AVNSATGVPTV VAVLQAHQAKEAAQKAVNSATGVPTV____ AAQKAVNSATGVPTV_______________ K A V T V - 2 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 2 0 0 3 0 0 11 0 1014.5346 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;Q5VX58;Q3ZCS4;Q9H361;H0YAS7;H0YAS6;H0YB75;H0YC10;L0R533 A0A087WTT1 512 522 PABPC1;PABPC3;RLIM Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 1 0.0043726 72.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4625000 0 0 4625000 0 0 0 0 0 1375 273 1417 3739 5912 5912 1 AVNSIISIVFGTR LRKLLKPDIERERLKAVNSIISIVFGTRRI LKAVNSIISIVFGTRRIAWAHLDRKLTVLD K A V T R R 1 1 1 0 0 0 0 1 0 3 0 0 0 1 0 2 1 0 0 2 0 0 13 0 1375.7823 J3KTG7;Q96QE5 J3KTG7 166 178 TEFM Transcription elongation factor, mitochondrial yes no 2 7.3128E-05 91.937 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1324600 0 1324600 1324600 0 1324600 0 0 0 1376 1332 1418 3740;3741;3742 5913;5914;5915 5914 3 AVPGGAGDASVLPSLPR YTQTSDPGRHVMLLRAVPGGAGDASVLPSL PGGAGDASVLPSLPREGQEKVLDRLDFVLT R A V P R E 3 1 0 1 0 0 0 3 0 0 2 0 0 0 3 2 0 0 0 2 0 0 17 0 1562.8417 H0YNE5;H0YLG5;A0A024R9P6;Q96TC7;B3KUI4 H0YNE5 68 84 RMDN3;FAM82C Regulator of microtubule dynamics protein 3 yes no 2 0.0033463 53.001 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20304000 0 20304000 20304000 0 20304000 0 0 0 1377 285 1419 3743;3744 5916;5917 5916 2 AVPGTEVPGHK ANLLEKTGGVDFHMKAVPGTEVPGHKNWVV FHMKAVPGTEVPGHKNWVVSKFGRVLPVLH K A V H K N 1 0 0 0 0 0 1 2 1 0 0 1 0 0 2 0 1 0 0 2 0 0 11 0 1090.5771 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H797;F5H692;Q7Z607 A0A024R250 129 139 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.00045925 76.827 2 0.97843 1.0205 25.445 2 Median 0.97843 1.0205 25.445 2 0 Median NaN NaN NaN 0 0 Median 48635000 25352000 23283000 48635000 25352000 23283000 0 0 0 1378 104 1420 3745;3746 5918;5919;5920 5920 3 AVPLALALISVSNPR TFGHLLRYGEPTLRRAVPLALALISVSNPR AVPLALALISVSNPRLNILDTLSKFSHDAD R A V P R L 3 1 1 0 0 0 0 0 0 1 3 0 0 0 2 2 0 0 0 2 0 0 15 0 1519.9086 Q59EG8;Q13200;B4DM22;Q13041;H7C1H2 Q59EG8 694 708 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 2.1251E-07 108.35 2 2.203 2.3299 1.9623 2 Median 2.203 2.3299 1.9623 2 0 Median NaN NaN NaN 0 0 Median 70690000 21692000 48999000 70690000 21692000 48999000 0 0 0 1379 1707 1421 3747;3748 5921;5922;5923 5923 3 AVPLAVPLGQTEVFQALQR ______________________________ AVPLGQTEVFQALQRLHMTIFSQSVSPCGK R A V Q R L 3 1 0 0 0 3 1 1 0 0 3 0 0 1 2 0 1 0 0 3 0 0 19 0 2036.1419 Q86W42 Q86W42 4 22 THOC6 THO complex subunit 6 homolog yes yes 2 3.2294E-05 56.205 2 0.97835 0.97445 10.829 2 Median 0.97835 0.97445 10.829 2 0 Median NaN NaN NaN 0 0 Median 21977000 11221000 10756000 21977000 11221000 10756000 0 0 0 1380 1886 1422 3749;3750 5924;5925 5924 2 AVPSSFSPFVEFK ELVLPALQYLAGESRAVPSSFSPFVEFKEK SRAVPSSFSPFVEFKEKTQQWKLLGQSQDN R A V F K E 1 0 0 0 0 0 1 0 0 0 0 1 0 3 2 3 0 0 0 2 0 0 13 0 1440.7289 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 440 452 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.00011207 80.102 2 2 1.1105 0.99425 28.08 4 Median 0.78285 0.78766 1.0838 2 0 Median 1.5922 1.279 3.7621 2 0 Median 29284000 14671000 14613000 16916000 10108000 6808400 12368000 4563600 7804300 1381 135 1423 3751;3752;3753;3754 5926;5927;5928;5929;5930;5931;5932 5930 7 AVPSWFVR SYPFCWRSDTPLIYKAVPSWFVRVENMVDQ DTPLIYKAVPSWFVRVENMVDQLLRNNDLC K A V V R V 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 2 0 0 8 0 960.51814 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4 Q59G75 428 435 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.011011 70.912 2 1.7145 1.8635 8.2167 2 Median 1.7145 1.8635 8.2167 2 0 Median NaN NaN NaN 0 0 Median 79082000 31134000 47949000 79082000 31134000 47949000 0 0 0 1382 1561 1424 3755;3756 5933;5934 5933 2 AVPVWDVLASGYVSGAAR RAATMEVKVGRLRGRAVPVWDVLASGYVSG VWDVLASGYVSGAAREELLAEFGSGTLDLP R A V A R E 4 1 0 1 0 0 0 2 0 0 1 0 0 0 1 2 0 1 1 4 0 0 18 0 1816.9472 A0A075B730;A0A087X1U6;P58107 A0A075B730 4645 4662 EPPK1 Epiplakin no no 2 0.0051708 50.562 2 1 2.2023 2.2647 24.026 3 Median 2.316 2.4295 9.9351 2 0 Median 1.9946 1.6319 NaN 1 0 Median 63647000 19449000 44198000 50183000 14616000 35567000 13465000 4833400 8631400 1383 397;1622 1425 3757;3758;3759 5935;5936;5937 5936 1 AVPVWDVLASGYVSR RAATMEVKVGRLRGRAVPVWDVLASGYVSR AVPVWDVLASGYVSRAAREELLAEFGSGTL R A V S R A 2 1 0 1 0 0 0 1 0 0 1 0 0 0 1 2 0 1 1 4 0 0 15 0 1617.8515 A0A075B730;A0A087X1U6;P58107 A0A075B730 2508 2522 EPPK1 Epiplakin no no 2 5.0188E-06 96.745 2 2 1.8996 1.9746 10.067 3 Plateau 1.8834 1.9612 2.4124 2 0 Median 1.9223 1.6516 NaN 1 0 Median 49446000 16738000 32708000 43033000 15454000 27579000 6413300 1284300 5129100 1384 397;1622 1426 3760;3761;3762;3763 5938;5939;5940;5941;5942 5940 5 AVQAFVDGSAIQVLK EIVLVLQQFDFNVDKAVQAFVDGSAIQVLK AVQAFVDGSAIQVLKEWNMTGKKKNNKRKR K A V L K E 3 0 0 1 0 2 0 1 0 1 1 1 0 1 0 1 0 0 0 3 0 0 15 0 1544.8562 A0A024R3V0;Q9NUQ6;C9JKE4;F8VZ02;F8VT91;C9JGM8;F8W6C2;C9IZC3;C9J8M7;F2Z2S1;C9JW67 A0A024R3V0 43 57 DNAPTP6;SPATS2L SPATS2-like protein yes no 2 0.027419 28.379 1 1.1562 0.9456 NaN 1 Median NaN NaN NaN 0 0 Median 1.1562 0.9456 NaN 1 0 Median 4786200 1923400 2862800 0 0 0 4786200 1923400 2862800 1385 141 1427 3764 5943 5943 1 AVQFFVQALR YVRGLCLYYEDCIEKAVQFFVQALRMAPDH DCIEKAVQFFVQALRMAPDHEKACIACRNA K A V L R M 2 1 0 0 0 2 0 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 10 0 1177.6608 B4DKK3;B7Z9W6;Q59EH7;Q99615;K7EPP7;K7ESP1;A8K4T2;K7EIH8 B4DKK3 101 110 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.0011608 75.213 2 1.0844 1.0974 2.7584 2 Median 1.0844 1.0974 2.7584 2 0 Median NaN NaN NaN 0 0 Median 18024000 8005700 10018000 18024000 8005700 10018000 0 0 0 1386 990 1428 3765;3766 5944;5945 5945 2 AVQGAQQPSLYQIR SHFKRKFIIHRGKRKAVQGAQQPSLYQIRT KAVQGAQQPSLYQIRTNGSALCTRCIQINT K A V I R T 2 1 0 0 0 4 0 1 0 1 1 0 0 0 1 1 0 0 1 1 0 0 14 0 1557.8263 B4DIX0;Q13045;Q59H95 B4DIX0 1016 1029 FLII Protein flightless-1 homolog yes no 2 3.6016E-06 102.05 2 1 1.7369 1.755 11.403 3 Median 1.6884 1.6934 5.057 2 0 Median 2.3303 2.0427 NaN 1 0 Median 19827000 7538800 12288000 18496000 7029400 11467000 1330500 509490 821030 1387 984 1429 3767;3768;3769 5946;5947;5948;5949 5948 4 AVQYNEPLK NMYGSQESLTKVFERAVQYNEPLKVFLHLA TKVFERAVQYNEPLKVFLHLADIYAKSEKF R A V L K V 1 0 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 9 0 1060.5553 Q14690 Q14690 1684 1692 PDCD11 Protein RRP5 homolog yes yes 2 2.5503E-05 113.5 2 2 1.2404 1.1651 6.179 4 Median 1.0853 1.2114 3.8806 2 0 Median 1.3887 1.1114 5.0238 2 0 Median 189380000 96324000 93059000 163600000 85612000 77989000 25781000 10711000 15070000 1388 1741 1430 3770;3771;3772;3773 5950;5951;5952;5953;5954;5955;5956;5957;5958 5950 9 AVREPPEDEEEEDGREK LIHVIRHCLNACIQRAVREPPEDEEEEDGR REPPEDEEEEDGREKENVTVLDKTLSVNDV R A V E K E 1 2 0 2 0 0 7 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 17 2 2012.8923 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 585 601 NCAPG2 Condensin-2 complex subunit G2 yes no 3;4 4.3018E-07 107.73 3 0.86151 0.96795 11.886 3 Median 0.86151 0.96795 11.886 3 0 Median NaN NaN NaN 0 0 Median 33062000 17323000 15740000 33062000 17323000 15740000 0 0 0 1389 1887 1431 3774;3775;3776 5959;5960;5961;5962;5963;5964 5961 6 AVSEEQQPALK HPPKPAKPEKNRINKAVSEEQQPALKGKKG RINKAVSEEQQPALKGKKGKEEKSKGKAKP K A V L K G 2 0 0 0 0 2 2 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1198.6194 Q8NE71;Q2L6I2;B4DNU2;Q5STZ8;A0PJ72;F5GYK6 Q8NE71 164 174 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.3453E-16 151.44 2 2 0.69684 0.56283 24.776 3 Median 0.75537 0.79185 NaN 1 0 Median 0.6557 0.52468 9.9238 2 0 Median 65000000 46704000 18296000 55960000 41280000 14680000 9040500 5424400 3616100 1390 1926 1432 3777;3778;3779;3780 5965;5966;5967;5968;5969 5966 5 AVSELELLGFIK TSEEMNEIIHARFIRAVSELELLGFIKPTK FIRAVSELELLGFIKPTKQKTDHVARLTWG R A V I K P 1 0 0 0 0 0 2 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 12 0 1317.7544 B4E014;Q9UBD5 B4E014 621 632 ORC3 Origin recognition complex subunit 3 yes no 2 0.00019628 90.15 2 1.2634 1.2792 4.3729 2 Median 1.2634 1.2792 4.3729 2 0 Median NaN NaN NaN 0 0 Median 14253000 6457500 7795900 14253000 6457500 7795900 0 0 0 1391 1058 1433 3781;3782 5970;5971;5972;5973 5970 4 AVSGYSDQVVHQR SCPLLKSLVFSSHCKAVSGYSDQVVHQRRS CKAVSGYSDQVVHQRRSATSSLRRCLLTEL K A V Q R R 1 1 0 1 0 2 0 1 1 0 0 0 0 0 0 2 0 0 1 3 0 0 13 0 1444.7059 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 979 991 INOC1;INO80 DNA helicase INO80 yes no 3 0.026577 28.053 1 0.61484 0.60301 NaN 1 Median 0.61484 0.60301 NaN 1 0 Median NaN NaN NaN 0 0 Median 13916000 7989100 5926600 13916000 7989100 5926600 0 0 0 1392 288 1434 3783 5974 5974 0 AVSISTEPPTYLR SEVEEILDGNDEKYKAVSISTEPPTYLREQ YKAVSISTEPPTYLREQKAKRNSQWVPTLP K A V L R E 1 1 0 0 0 0 1 0 0 1 1 0 0 0 2 2 2 0 1 1 0 0 13 0 1432.7562 Q9H836;G5E975;Q12824;Q86WI8;A0A0U1RQQ2;Q86WI7;A0A0U1RRB8;C9JTA6;A0A0G2JSE9;B4E117;B4DRT1 Q9H836 100 112 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 2 1.5942E-06 104.52 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14012000 14012000 0 14012000 14012000 0 0 0 0 1393 1276 1435 3784 5975 5975 1 AVSTVVVTTAPSPK PASHLQQGTASGSSKAVSTVVVTTAPSPKQ KAVSTVVVTTAPSPKQAPEQQ_________ K A V P K Q 2 0 0 0 0 0 0 0 0 0 0 1 0 0 2 2 3 0 0 4 0 0 14 0 1355.766 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1280 1293 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 1.7583E-09 118.9 2 1 0.89401 0.88931 49.974 3 Median 0.84785 0.85244 5.9898 2 0 Median 2.3895 2.0194 NaN 1 0 Median 22706000 10852000 11854000 20710000 10264000 10447000 1995900 588620 1407300 1394 135 1436 3785;3786;3787 5976;5977;5978 5976 3 AVTDFVIPECQK EQRCMRYNLSAGTIKAVTDFVIPECQKKSP TIKAVTDFVIPECQKKSPISKSMGTLENTF K A V Q K K 1 0 0 1 1 1 1 0 0 1 0 1 0 1 1 0 1 0 0 2 0 0 12 0 1405.6912 Q6P0N0 Q6P0N0 677 688 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.005878 61.353 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2969900 2969900 0 0 0 0 2969900 2969900 0 1395 1849 1437 3788;3789 5979;5980 5979 2 AVTELNEPLSNEDR AEQAERYDDMASAMKAVTELNEPLSNEDRN KAVTELNEPLSNEDRNLLSVAYKNVVGARR K A V D R N 1 1 2 1 0 0 3 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 14 0 1585.7584 A0A024R1K7;Q04917 A0A024R1K7 29 42 YWHAH 14-3-3 protein eta yes no 2 3.9623E-07 111.52 2 1.6126 1.6355 5.3119 2 Median 1.6126 1.6355 5.3119 2 0 Median NaN NaN NaN 0 0 Median 26416000 7992900 18423000 26416000 7992900 18423000 0 0 0 1396 78 1438 3790;3791 5981;5982;5983;5984;5985 5984 5 AVTEQGAELSNEER AEQAERYDDMATCMKAVTEQGAELSNEERN KAVTEQGAELSNEERNLLSVAYKNVVGGRR K A V E R N 2 1 1 0 0 1 4 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1531.7114 P27348;E9PG15;Q53RR5 P27348 28 41 YWHAQ 14-3-3 protein theta yes no 2 6.8812E-07 110.66 2 2.2775 2.3411 NaN 1 Median 2.2775 2.3411 NaN 1 0 Median NaN NaN NaN 0 0 Median 21233000 6893700 14340000 21233000 6893700 14340000 0 0 0 1397 1523 1439 3792;3793 5986;5987 5987 2 AVTEQGHELSNEER AEQAERYDDMAAAMKAVTEQGHELSNEERN KAVTEQGHELSNEERNLLSVAYKNVVGARR K A V E R N 1 1 1 0 0 1 4 1 1 0 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1597.7332 V9HWD6;P31946;B5BU24;Q4VY20;A0A0J9YWZ2;Q4VY19;A0A0J9YWE8;Q59EQ2 V9HWD6 30 43 HEL-S-1;YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 2;3 3.4622E-42 162.22 4 1 0.86923 0.76487 73.878 3 Median 0.9457 0.96325 102.77 2 0 Median 0.86923 0.76487 NaN 1 0 Median 33664000 8178600 25486000 32769000 7690400 25078000 895580 488140 407430 1398 1536 1440 3794;3795;3796;3797;3798 5988;5989;5990;5991;5992;5993 5989 6 AVTETSFNSVNVNGQR NVHSANVSKVSFNEKAVTETSFNSVNVNGQ VTETSFNSVNVNGQRGENSKLSLTPNCSST K A V Q R G 1 1 3 0 0 1 1 1 0 0 0 0 0 1 0 2 2 0 0 3 0 0 16 0 1721.8333 Q8IZT6;B3KWI2 Q8IZT6 275 290 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 0.0044516 52.693 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1399 1902 1441 3799;3800 5994;5995 5995 2 AVTGYRDPYTGQSVSLFQALK LVGPEFHEKLLSAEKAVTGYRDPYTGQSVS DPYTGQSVSLFQALKKGLIPREQGLRLLDA K A V L K K 2 1 0 1 0 2 0 2 0 0 2 1 0 1 1 2 2 0 2 2 0 0 21 1 2300.1801 Q15149;D3DWL0 Q15149 3238 3258 PLEC;PLEC1 Plectin yes no 3 0.001372 31.067 2 2.9216 2.4879 17.403 2 Median NaN NaN NaN 0 0 Median 2.9216 2.4879 17.403 2 0 Median 5414600 1584900 3829600 0 0 0 5414600 1584900 3829600 1400 1754 1442 3801;3802 5996;5997 5997 2 AVTVMMDPNSTQR MAMDQVNALCEQLVKAVTVMMDPNSTQRYR VKAVTVMMDPNSTQRYRLEALKFCEEFKEK K A V Q R Y 1 1 1 1 0 1 0 0 0 0 0 0 2 0 1 1 2 0 0 2 0 0 13 0 1448.6752 A8K5Y7;Q9HAV4;E2QRM3 A8K5Y7 16 28 XPO5 Exportin-5 yes no 2 0.011408 51.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1401 754 1443 3803 5998 5998 583;584 1 AVVEVNIPVESEVNLK EKLISQIQPEVDRERAVVEVNIPVESEVNL VVEVNIPVESEVNLKLQNIMMLLRKCCNHP R A V L K L 1 0 2 0 0 0 3 0 0 1 1 1 0 0 1 1 0 0 0 5 0 0 16 0 1737.9513 A0A087WSW7;F6XU50;Q6I7N8;A0A0B4J1V9;Q9NRZ9 A0A087WSW7 406 421 HELLS Lymphoid-specific helicase yes no 2 0.00167 44.193 1 0.87843 0.87684 NaN 1 Median 0.87843 0.87684 NaN 1 0 Median NaN NaN NaN 0 0 Median 14854000 7832300 7021300 14854000 7832300 7021300 0 0 0 1402 400 1444 3804 5999 5999 1 AVVGVVAGGGR KLPSGSKKVISSANRAVVGVVAGGGRIDKP SANRAVVGVVAGGGRIDKPILKAGRAYHKY R A V G R I 2 1 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 11 0 940.54541 P62917;E9PKZ0;E9PKU4;E9PP36 P62917 164 174 RPL8 60S ribosomal protein L8 yes no 2 0.00035426 85.064 2 2 0.84335 0.85417 13.867 4 Median 0.8126 0.96374 2.2212 2 0 Median 0.87221 0.75927 1.8083 2 0 Median 3497300000 1895800000 1601500000 3140300000 1712000000 1428300000 356910000 183790000 173130000 1403 1653 1445 3805;3806;3807;3808 6000;6001;6002;6003;6004;6005;6006;6007;6008;6009;6010;6011 6004 12 AVVIVDDR ELLEEAFSVFGQVERAVVIVDDRGRPSGKG VFGQVERAVVIVDDRGRPSGKGIVEFSGKP R A V D R G 1 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 8 0 885.49198 Q9BSV4;Q86VG2;P23246;Q6PIX2;A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9IZL7 A8K525 177 184 SFPQ;NONO Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein no no 2 0.0019305 104.45 2 1 1.5049 1.7653 40.003 3 Plateau 1.5049 1.7653 3.4375 2 0 Median 1.0234 0.884 NaN 1 0 Median 771260000 291030000 480230000 748420000 279030000 469390000 22840000 12001000 10839000 1404 573;1510 1446 3809;3810;3811 6012;6013;6014;6015;6016;6017 6015 6 AVVLHPR GKTRVTLTNHKKSVRAVVLHPRHYTFASGS TNHKKSVRAVVLHPRHYTFASGSPDNIKQW R A V P R H 1 1 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 2 0 0 7 0 790.48136 O43660;H0YA24;H0YAA2 O43660 377 383 PLRG1 Pleiotropic regulator 1 yes no 2 0.035946 65.263 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7873600 0 7873600 7873600 0 7873600 0 0 0 1405 1386 1447 3812 6018 6018 1 AVVLPGR SVLCLYDLGISKVVKAVVLPGRVTAIEPII LGISKVVKAVVLPGRVTAIEPIINHGGASA K A V G R V 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 7 0 710.44391 Q8WYP5;Q96M44 Q8WYP5 119 125 AHCTF1 Protein ELYS yes no 2 0.026766 74.597 2 1 1.8801 1.7331 30.874 2 Median 1.3654 1.3932 NaN 1 0 Median 2.5889 2.156 NaN 1 0 Median 53185000 12433000 40752000 46923000 10805000 36118000 6261600 1627600 4633900 1406 1945 1448 3813;3814;3815 6019;6020;6021;6022 6020 4 AVVMPLQLIQEQAASPNAEIHILK PLSHRTVTGAKPLKKAVVMPLQLIQEQAAS QEQAASPNAEIHILKNKGRKRKLESLDALE K A V L K N 4 0 1 0 0 3 2 0 1 3 3 1 1 0 2 1 0 0 0 2 0 0 24 0 2612.436 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q7LE35;I3L306 Q14807 529 552 KIF22;OBP-2;A-328A3.5 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 6.0262E-06 40.012 1 1.1056 1.1113 NaN 1 Median 1.1056 1.1113 NaN 1 0 Median NaN NaN NaN 0 0 Median 9934600 4567900 5366700 9934600 4567900 5366700 0 0 0 1407 1745 1449 3816 6023 6023 1597 1 AVVVDDYR GHDQRLKFWDMAQLRAVVVDDYRRRKKKGG WDMAQLRAVVVDDYRRRKKKGGPLRALSSK R A V Y R R 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 8 0 935.47125 Q9H6Y2;G3V1J0 Q9H6Y2 329 336 WDR55 WD repeat-containing protein 55 yes no 2 0.042651 46.426 1 1.2118 1.0607 NaN 1 Median NaN NaN NaN 0 0 Median 1.2118 1.0607 NaN 1 0 Median 1852900 719070 1133800 0 0 0 1852900 719070 1133800 1408 2039 1450 3817 6024 6024 1 AVVVPAR HKRPAPEKKETTVKKAVVVPARSEALGKEA KKETTVKKAVVVPARSEALGKEAACESSTP K A V A R S 2 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 7 0 710.44391 Q9BTC0 Q9BTC0 482 488 DIDO1 Death-inducer obliterator 1 yes yes 2 0.029007 74.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1409 2002 1451 3818 6025 6025 1 AVYTQDCPLAAAK KKAEEIANEMIEAAKAVYTQDCPLAAAKAI AKAVYTQDCPLAAAKAIQGLRAVFDETYPD K A V A K A 4 0 0 1 1 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 13 0 1406.6864 P49588;H3BPK7 P49588 665 677 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.00031803 88.495 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8838500 0 8838500 8838500 0 8838500 0 0 0 1410 1583 1452 3819;3820 6026;6027 6027 2 AVYVPFWQK DVPPSYVQTKFSRLKAVYVPFWQKKTFPEI KFSRLKAVYVPFWQKKTFPEIIDYLYETTL K A V Q K K 1 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 1 1 2 0 0 9 0 1136.6019 B4DZG2;A0A024R8C1;Q15361;A0A087WY09 B4DZG2 809 817 TTF1 Transcription termination factor 1 yes no 2 0.010523 59.205 2 2.0652 1.6585 6.93 2 Median NaN NaN NaN 0 0 Median 2.0652 1.6585 6.93 2 0 Median 4447200 1501100 2946100 0 0 0 4447200 1501100 2946100 1411 247 1453 3821;3822 6028;6029 6029 2 AWDFLSENQLQTVNFR TILKIPMNELTTILKAWDFLSENQLQTVNF WDFLSENQLQTVNFRQRKESVVQHLIHLCE K A W F R Q 1 1 2 1 0 2 1 0 0 0 2 0 0 2 0 1 1 1 0 1 0 0 16 0 1966.9537 Q96H22;H3BMC7;D3DUK9;H3BMD5 Q96H22 27 42 CENPN;C16orf60 Centromere protein N yes no 2 0.03675 36.284 1 0.51486 0.5204 NaN 1 Median 0.51486 0.5204 NaN 1 0 Median NaN NaN NaN 0 0 Median 9832700 5792100 4040700 9832700 5792100 4040700 0 0 0 1412 1970 1454 3823 6030 6030 0 AWEEYYK EPPQPPPTGQSDYTKAWEEYYKKIGQQPQQ TGQSDYTKAWEEYYKKIGQQPQQPGAPPQQ K A W Y K K 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 1 2 0 0 0 7 0 987.4338 A0A087WTP3;Q92945;M0QYG1;M0R0C6;M0R3J3;M0R251;M0R263 A0A087WTP3 621 627 KHSRP Far upstream element-binding protein 2 no no 2 0.031834 73.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7202300 0 7202300 7202300 0 7202300 0 0 0 1413 403 1455 3824 6031 6031 1 AWFQTPYATIR ASILPLCDIVWASEKAWFQTPYATIRLTPA ASEKAWFQTPYATIRLTPAGCSSYTFPQIL K A W I R L 2 1 0 0 0 1 0 0 0 1 0 0 0 1 1 0 2 1 1 0 0 0 11 0 1352.6877 A0A0B4J291;Q8N8U2 A0A0B4J291 378 388 CDYL2 Chromodomain Y-like protein 2 yes no 2 0.00032728 87.181 2 2 1.1544 1.1483 1.8816 3 Median 1.126 1.1497 0.17086 2 0 Median 1.3256 1.1129 NaN 1 0 Median 36509000 15018000 21491000 28686000 12943000 15743000 7823100 2075400 5747700 1414 503 1456 3825;3826;3827;3828 6032;6033;6034;6035;6036;6037 6032 6 AWGPGLEGGVVGK FEVKVGTECGNQKVRAWGPGLEGGVVGKSA VRAWGPGLEGGVVGKSADFVVEAIGDDVGT R A W G K S 1 0 0 0 0 0 1 5 0 0 1 1 0 0 1 0 0 1 0 2 0 0 13 0 1225.6455 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 581 593 FLNA Filamin-A yes no 2 0.0020397 72.006 2 1 0.90756 0.71332 NaN 1 Median NaN NaN NaN 0 0 Median 0.90756 0.71332 NaN 1 0 Median 22338000 1185800 21152000 19203000 0 19203000 3134800 1185800 1949000 1415 1504 1457 3829;3830;3831 6038;6039;6040 6038 3 AWIPSENIQDITVNIHR DNQVDVRFFGHHHQRAWIPSENIQDITVNI IPSENIQDITVNIHRLHVKRSMGWKKACDE R A W H R L 1 1 2 1 0 1 1 0 1 4 0 0 0 0 1 1 1 1 0 1 0 0 17 0 2005.0381 Q15326;E7ENI9;J3QKD2;Q5BJG6;B7Z3W2;B0QZE2;B7Z2J6;Q6PJR5;A0A0A0MRY2;Q5UGI2;B7Z3Z1 Q15326 318 334 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 2.2694E-05 66.965 2 2 1.3267 1.2006 5.9988 4 Median 1.1816 1.2507 9.5126 2 0 Median 1.4698 1.2006 0.89334 2 0 Median 83036000 38674000 44362000 57510000 27814000 29696000 25526000 10860000 14666000 1416 1758 1458 3832;3833;3834;3835 6041;6042;6043;6044;6045;6046;6047 6041 7 AWNDIKK YKKTKEAVLLLKKLKAWNDIKKVYASQRMR VLLLKKLKAWNDIKKVYASQRMRAGKGKMR K A W K K V 1 0 1 1 0 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 7 1 873.47085 P36578;Q59GY2;B4DMJ6;H3BM89;B4DFI6;Q53G74;B4DMJ2;H3BTP7 P36578 176 182 RPL4 60S ribosomal protein L4 yes no 2 0.046376 81.784 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1417 1548 1459 3836 6048 6048 1 AWVEEVRK KPSDAESSESSDDEKAWVEEVRKQRRLLQQ ESSDDEKAWVEEVRKQRRLLQQEEKVKRQE K A W R K Q 1 1 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 1 0 2 0 0 8 1 1015.5451 Q9BSC4;B4DS83 Q9BSC4 556 563 NOL10 Nucleolar protein 10 yes no 2 0.023839 63.48 1 1.3993 1.2101 NaN 1 Median NaN NaN NaN 0 0 Median 1.3993 1.2101 NaN 1 0 Median 14543000 5524000 9019000 0 0 0 14543000 5524000 9019000 1418 2000 1460 3837 6049 6049 1 AYAALAALEK GQKFQGAGSNKKVAKAYAALAALEKLFPDT KKVAKAYAALAALEKLFPDTPLALDANKKK K A Y E K L 5 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1019.5651 F4ZW64;F4ZW65;A0A024R7C7;F4ZW66;Q12906;A8K590;B4DFG4;B4DDF3 F4ZW64 578 587 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.0016591 72.643 1 1.3304 1.4376 NaN 1 Median 1.3304 1.4376 NaN 1 0 Median NaN NaN NaN 0 0 Median 21917000 8335500 13582000 21917000 8335500 13582000 0 0 0 1419 220 1461 3838 6050 6050 1 AYAPGGPAYQPVVEAFGTDILHK GLGAFVIDSDHLGHRAYAPGGPAYQPVVEA YQPVVEAFGTDILHKDGIINRKVLGSRVFG R A Y H K D 4 0 0 1 0 1 1 3 1 1 1 1 0 1 3 0 1 0 2 2 0 0 23 0 2400.2114 Q13057 Q13057 395 417 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes yes 3 6.5371E-06 43.841 2 2 1.2579 1.1448 22.473 4 Median 1.3622 1.3573 10.262 2 0 Median 1.1848 0.95188 12.273 2 0 Median 60616000 25212000 35404000 49693000 20038000 29655000 10923000 5173600 5749000 1420 1704 1462 3839;3840;3841;3842 6051;6052;6053;6054;6055;6056;6057;6058;6059 6052 9 AYDGTTYLPGIVGLNNIK KQQIANLDKQAKLSRAYDGTTYLPGIVGLN GTTYLPGIVGLNNIKANDYANAVLQALSNV R A Y I K A 1 0 2 1 0 0 0 3 0 2 2 1 0 0 1 0 2 0 2 1 0 0 18 0 1907.9993 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;A0A087WW31 B9A018 214 231 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 1.04E-07 89.266 2 2 0.7169 0.62423 9.8313 4 Median 0.62804 0.6267 13.722 2 0 Median 0.7762 0.62423 10.075 2 0 Median 58951000 34525000 24426000 48330000 28806000 19524000 10620000 5718500 4901800 1421 1119 1463 3843;3844;3845;3846 6060;6061;6062;6063;6064 6061 5 AYDIAGSTK MQSLDKDIVALMVRRAYDIAGSTKDVKVFL ALMVRRAYDIAGSTKDVKVFLNGNKLPVKG R A Y T K D 2 0 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 9 0 924.45526 P11388 P11388 243 251 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.3036E-06 134.48 2 2 0.75798 0.90269 14.396 3 Median 0.75573 0.89145 1.7719 2 0 Median 1.3457 1.1428 NaN 1 0 Median 989740000 539160000 450580000 925500000 512760000 412750000 64235000 26408000 37826000 1422 1471 1464 3847;3848;3849;3850 6065;6066;6067;6068;6069;6070;6071 6067 7 AYDLAGSCR MEKLDKDIVALMTRRAYDLAGSCRGVKVMF ALMTRRAYDLAGSCRGVKVMFNGKKLPVNG R A Y C R G 2 1 0 1 1 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1011.4444 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 236 244 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 1.5944E-11 139.97 3 1 0.966 0.82886 NaN 1 Median NaN NaN NaN 0 0 Median 0.966 0.82886 NaN 1 0 Median 65265000 49788000 15477000 56912000 45697000 11216000 8352700 4091400 4261300 1423 1679 1465 3851;3852;3853;3854 6072;6073;6074;6075;6076 6072 5 AYDLLDK ADKLTVKFWRALLSKAYDLLDKVNALLPTE FWRALLSKAYDLLDKVNALLPTETFIPVIR K A Y D K V 1 0 0 2 0 0 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 836.42798 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1584 1590 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.031652 66.799 1 0.94511 1.0683 NaN 1 Median 0.94511 1.0683 NaN 1 0 Median NaN NaN NaN 0 0 Median 83834000 40132000 43702000 83834000 40132000 43702000 0 0 0 1424 897 1466 3855 6077 6077 1 AYFTAPR LCGIHYIDAGYLGFKAYFTAPRKGTVWSLS DAGYLGFKAYFTAPRKGTVWSLSGSDWLGT K A Y P R K 2 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 7 0 824.41809 Q8WUA4;Q53SY8;H0Y4Q6;H7C3X9 Q8WUA4 698 704 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.031834 73.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9158700 0 9158700 9158700 0 9158700 0 0 0 1425 1938 1467 3856 6078 6078 1 AYFTSATMIIAIPTGVK WAHHMFTVGMDVDTRAYFTSATMIIAIPTG FTSATMIIAIPTGVKVFSWLATLHGSNMKW R A Y V K V 3 0 0 0 0 0 0 1 0 3 0 1 1 1 1 1 3 0 1 1 0 0 17 0 1782.959 Q5Q2N8;Q5Q1W2;A0A075X8H6;X2C5C9;A0A059S1Y5;A0A075X6S7;A0A059RPI8;A0A059QPI2;A0A059RP47;A0A1B1PEL1;A0A059QMF7;A0A059QD37;A0A088FSE5;A0A023Q488;C8YAE4;A0A059R5S6;X5D927;X5C9H5;X5BVM8;X5BMX5;X5BDH6;W8DJ92;W8DEK8;W8D226;W0C7W3;V9PAX5;V9N872;V9N3I6;V9JVR4;V9JU54;V9JI12;V9JCG6;V9JAP4;V9J978;V9J4D6;V9J248;V5N397;V5L903;V5JIE7;U5ZA32;U5YWV7;U3LSF4;U3L6G3;U3L439;U3KW58;T2HM13;T2HKF7;T1Q7E3;T1Q4Y6;S4SSZ5;R9Y9M1;R9Y9G2;R9Y6E5;R9Y634;R9Y5G0;R9Y4H6;R9Y445;R9Y438;R9Y3X2;R9Y251;R9Y1Y2;R4IBW8;R4IA65;R4I9P2;Q9B2W6;Q9B2V6;Q9B2V2;Q9B2U9;Q9B2U7;Q9B1K0;Q9B1J9;Q8WCY5;Q8WCX5;Q8WCW6;Q85L11;Q7YEF5;Q7YCF0;Q7YCE3;Q7Y7K9;Q7Y6V6;Q6VLK7;Q6VHV2;Q6RRI3;Q6RNG4;Q6RN73;Q6RMP2;Q6RKZ7;Q5XT74;Q5XS99;Q5XRR7;Q5S9T0;Q4ZF72;Q4VFI9;Q4GVU8;Q4GV90;Q4GUT4;Q4GTJ2;Q4GR21;Q4GKW4;Q4GIJ5;Q4GGC8;Q4GBG2;Q4GAL3;Q4G9M5;Q4G7P9;Q4G7F8;Q4F6E2;Q4F5X3;Q4F563;Q4F387;Q4F2G4;Q4F260;Q4F1M8;Q4F198;Q4EZA9;Q4EWN6;Q305V1;Q2HL32;Q2HKZ3;Q2HKD5;Q15IJ2;Q15HF4;Q0ZEM3;Q0Z7V8;Q0Z7S1;Q0Z7N0;Q0Z7K4;Q0Z7J1;Q0Z7D9;Q0VXC9;N0BWE9;L7Y0W9;L7XYA7;L7XWV6;L7XWN7;L7XVQ8;L7XRG2;L7XRA8;L7XQA3;L7XP46;L7XNU8;L7XKH8;L7XJZ7;L7XIT0;L7XGI1;L7XE69;L7P4C8;J7HAE4;I6TIT6;I3Q9N9;I3Q8N8;I3PXU2;H9TVE6;H9T635;H9T3W8;H9SVK6;H9SMX8;H9SH37;H9SAN8;H9S1H1;H9RVW4;H9RQ17;H9RLZ4;H9RI29;H9REE2;H9R9Z5;H9R6C1;H9R3E4;H9QP91;H9QMQ8;H9QFG0;H9QDP9;H9Q1L1;H9PU09;H9PJX4;H9PJE2;H9P677;H9P3H8;H9NZW7;H9NQR9;H9NNI9;H9MVI2;H9MP07;H9MKW5;H9M4B7;H9M478;H9LP88;H9LP39;H9LNZ7;H9LJV9;H9E7T2;H9E7M1;H9E7I2;H9E7G9;H9E7F6;H9E7E3;H9E7A4;H9E791;H9E778;G9LML2;G9LMG0;G9LLS6;G9LLD3;G9LKS5;G9LKL0;G9LIE3;G9LDZ6;G9LC85;G9C7X1;G5D8R7;G5D8E0;G5D8B4;G5D862;G5D823;G5D810;G3EBF7;G3CA48;G3CA09;G3C9Z6;G3C9Y3;F6N7M2;F2WJ44;F2WIN8;F2WI82;F2WHQ0;F2WG54;F2WEA4;F1CIP8;F1CIE4;F1B7C4;F1AK66;E9LCE9;E9LAX9;E9K944;E9JWI2;E7E4V8;E7E3Z6;E5E215;E5E1W3;E5E1V0;E5E1J6;E5E1I3;E5E1D1;E5E0B7;E5DYE1;E5DY11;E2FQV8;E2FPB2;E2CZ38;D9MZZ6;D9MZK8;D9MZ72;D7PAR1;D7P9P7;D6R6E1;D6R5V9;D6R536;D6N4H5;D6C1N7;D4IH19;D3YSB9;D3YLP1;D2K1K1;D0UTT2;D0UTR9;C9D6C5;C8Y5L7;C8Y372;C8Y359;C8Y0X9;C8XZE6;C7SK85;C7SJV5;C7SDQ5;C7BWV0;C5MMW9;B8X5P0;B8X5M7;B8X558;B8RFT7;B8RC45;B7TD03;B5M7Y6;B4F437;B3GSQ2;B3DEC2;B3DD95;B2XPY6;B2XNF6;B2XM03;B2XLJ8;B2XLI5;B2XLA7;B2XJ80;B2XI93;B2XHY2;B2XH81;B2XGN6;B2XEY0;B2KM44;B2CB36;B1PI08;B1NVJ4;B1NUS1;B1NUB5;B1NTV9;B0Z6V0;B0Z6P8;A8JLF0;A7XSQ0;A7LFE0;A7LEL7;A6ZGQ2;A6ZG99;A6ZFK2;A6ZEY2;A6ZA20;A6Z6U0;A6Z6C1;A6Z5Z1;A6Z1V1;A6Z0P9;A6YZK9;A6YYY8;A6YYA4;A6YV54;A6YV28;A6YU66;A6YTK8;A6NAM9;A4ZLB9;A4ZL80;A3RMP9;A1DTW0;A1DTC8;A1DSF3;A0SCP2;A0A1S6PBY2;A0A1S6NUF8;A0A1S6NS83;A0A1S6NQM8;A0A1S6NFK8;A0A1S6NEP9;A0A1S6MSZ7;A0A1S6MRR5;A0A1S6MR38;A0A1S6MDW5;A0A1L5YTI5;A0A1L1ZH85;A0A1L1ZBL2;A0A1L1ZA99;A0A1J0QWW6;A0A1J0QF44;A0A1I9S094;A0A1B2ALK6;A0A1B1PES1;A0A1B0WVA5;A0A1B0WUZ9;A0A1B0WUV3;A0A1B0W642;A0A1B0W381;A0A1B0VZ80;A0A191ZB55;A0A167L934;A0A141ZRF4;A0A120HFH0;A0A109PUH2;A0A109PQK6;A0A0X9WGC5;A0A0X9U3N0;A0A0X9TTD1;A0A0X9RUR2;A0A0X8DEK3;A0A0S3CSX4;A0A0S2IB02;A0A0N6YPU8;A0A0N6W1U5;A0A0K1MZC4;A0A0K1HQ03;A0A0G2UIR5;A0A0E3M100;A0A0E3JKK4;A0A0E3DJN0;A0A0E3DIC0;A0A0E3D777;A0A0D4WP08;A0A0B6CEA2;A0A0A7HLS2;A0A0A0QPJ2;A0A097QGB7;A0A097Q5Q6;A0A097PZ33;A0A097PVI9;A0A096X2Q6;A0A096X0J8;A0A096WXE1;A0A096WPC6;A0A096WLG7;A0A096WJI6;A0A096WFT6;A0A096WB77;A0A096WB29;A0A096VWL6;A0A075XDJ9;A0A075X739;A0A075X6I9;A0A068C3I7;A0A068C1W5;A0A068BX39;A0A068BQ73;A0A068BMI9;A0A068BLH5;A0A059SAV2;A0A059S9Y2;A0A059S7W0;A0A059S7V7;A0A059RZR9;A0A059RZ56;A0A059RYF2;A0A059RXU6;A0A059RXE8;A0A059RWV5;A0A059RWU6;A0A059RW06;A0A059RVX4;A0A059RVV8;A0A059RVA7;A0A059RV27;A0A059RUX1;A0A059RUQ7;A0A059RUN9;A0A059RUL2;A0A059RUA5;A0A059RU47;A0A059RU17;A0A059RTQ7;A0A059RTQ1;A0A059RTJ2;A0A059RTC9;A0A059RTB8;A0A059RT48;A0A059RT29;A0A059RSZ2;A0A059RSV5;A0A059RSL0;A0A059RSF2;A0A059RSE9;A0A059RSB9;A0A059RS64;A0A059RS27;A0A059RS25;A0A059RRN1;A0A059RRM2;A0A059RR92;A0A059RR08;A0A059RR03;A0A059RQC1;A0A059RQ39;A0A059RQ22;A0A059RPG4;A0A059RP89;A0A059RP35;A0A059RNW4;A0A059RNR8;A0A059RNK4;A0A059RND8;A0A059RM10;A0A059RL15;A0A059RKY1;A0A059RKT6;A0A059RKN3;A0A059RKL5;A0A059RKC0;A0A059RJY6;A0A059RJA5;A0A059RIM1;A0A059RIG5;A0A059RI82;A0A059RI06;A0A059RHU3;A0A059RHT3;A0A059RGQ1;A0A059R9I3;A0A059R9B8;A0A059R8S4;A0A059R2S3;A0A059R1N5;A0A059QZA3;A0A059QXN6;A0A059QXM3;A0A059QX78;A0A059QVS9;A0A059QVB1;A0A059QUZ1;A0A059QSZ9;A0A059QSP8;A0A059QSJ5;A0A059QSI9;A0A059QRD6;A0A059QQY6;A0A059QQF0;A0A059QQA1;A0A059QQ46;A0A059QQ12;A0A059QPW0;A0A059QPV3;A0A059QPP8;A0A059QPM6;A0A059QPB2;A0A059QNK0;A0A059QN30;A0A059QN28;A0A059QN10;A0A059QMX2;A0A059QMT2;A0A059QMS2;A0A059QLZ6;A0A059QLJ3;A0A059QLE2;A0A059QL41;A0A059QL24;A0A059QKK3;A0A059QK68;A0A059QK12;A0A059QJU3;A0A059QJR7;A0A059QJQ9;A0A059QJC8;A0A059QJB7;A0A059QJB6;A0A059QJ43;A0A059QJ22;A0A059QIM3;A0A059QIL9;A0A059QIH8;A0A059QIB6;A0A059QI24;A0A059QHQ8;A0A059QHB6;A0A059QGK2;A0A059QG65;A0A059QFN5;A0A059QF83;A0A059QEX3;A0A059QEM6;A0A059QDH5;A0A059QDC6;A0A059QC55;A0A059QC17;A0A059QBJ1;A0A059QBD7;A0A023RCN6;A0A023R6I9;A0A023R5A9;A0A023QYP8;A0A023QUR1;A0A023QUI5;A0A023QT79;A0A023QT24;A0A023QR89;A0A023QQ48;A0A023QGP7;A0A023QBJ9;A0A023Q8B2;A0A023Q7P2;A0A023Q5F4;A0A023Q552;A0A023Q4U0;A0A023Q4H9;A0A023Q3L7;A0A023Q3I2;A0A023Q2M3;A0A023Q2F1;A0A023I8X8;A0A023I8E0;A0A023I8C2;C7SJD6;C3UPN2;A0S1I7;A0A143FYP4;A0A059RDW3;A0A059QPS5;Q957U9;Q4F4Q7;Q2HKI7;L7XEH5;H9LPH4;F5BAC9;B7TCT8;B2Y9D8;A0A1S6N880;A0A1S6LZ02;A0A059RM34;P00395 Q5Q2N8 17 33 COX1;coxI;COI;CO1;cox1;MT-CO1 Cytochrome c oxidase subunit 1 yes no 2 0.00040653 59.306 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9018300 0 9018300 9018300 0 9018300 0 0 0 1426 1 1468 3857 6079 6079 0 1 AYGPGIEPTGNMVK PGAPLRPKLNPKKARAYGPGIEPTGNMVKK RAYGPGIEPTGNMVKKRAEFTVETRSAGQG R A Y V K K 1 0 1 0 0 0 1 3 0 1 0 1 1 0 2 0 1 0 1 1 0 0 14 0 1432.7021 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 286 299 FLNA Filamin-A yes no 2 6.1417E-05 80.706 2 1.6494 1.6998 NaN 1 Median 1.6494 1.6998 NaN 1 0 Median NaN NaN NaN 0 0 Median 25406000 15268000 10138000 25406000 15268000 10138000 0 0 0 1427 1504 1469 3858;3859 6080;6081 6081 1265 2 AYHEQLSVAEITNACFEPANQMVK HFPLATYAPVISAEKAYHEQLSVAEITNAC EITNACFEPANQMVKCDPRHGKYMACCLLY K A Y V K C 4 0 2 0 1 2 3 0 1 1 1 1 1 1 1 1 1 0 1 2 0 0 24 0 2749.284 B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;C9JDS9;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 246 269 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 3 6.1793E-36 126.32 2 2 1.9672 2.2581 69.557 3 Median 2.0019 2.2783 1.2602 2 0 Median 0.8179 0.68302 NaN 1 0 Median 361640000 136970000 224670000 303250000 109270000 193980000 58396000 27702000 30694000 1428 922;1659;1869 1470;1471 3860;3861;3862;3863 6082;6083;6084;6085;6086;6087;6088 6086 756 7 AYHEQLTVAEITNACFEPANQMVK HFPLATYAPVISAEKAYHEQLTVAEITNAC EITNACFEPANQMVKCDPRHGKYMACCLLY K A Y V K C 4 0 2 0 1 2 3 0 1 1 1 1 1 1 1 0 2 0 1 2 0 0 24 0 2763.2996 Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532 Q53GA7 281 304 TUBA1C Tubulin alpha-1C chain yes no 3 3.3235E-12 67.88 2 2 1.3742 1.3195 59 4 Median 1.6429 1.8188 2.2086 2 0 Median 0.90041 0.71892 42.695 2 0 Median 145200000 58348000 86851000 125230000 46917000 78318000 19965000 11431000 8533600 1429 1257 1472;1473 3864;3865;3866;3867 6089;6090;6091;6092;6093 6089 962 5 AYHMVCLDPDMEK CQQGGEIILCDTCPRAYHMVCLDPDMEKAP PRAYHMVCLDPDMEKAPEGKWSCPHCEKEG R A Y E K A 1 0 0 2 1 0 1 0 1 0 1 1 2 0 1 0 0 0 1 1 0 0 13 0 1607.6782 F5GWX5;A0A0C4DGG9;Q14839 F5GWX5 384 396 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0035892 51.445 1 0.75451 0.75194 NaN 1 Median 0.75451 0.75194 NaN 1 0 Median NaN NaN NaN 0 0 Median 6398700 4076300 2322400 6398700 4076300 2322400 0 0 0 1430 515 1474 3868 6094 6094 365;366 1 AYHSFLVEPISCHAWNK ______________________________ HSFLVEPISCHAWNKDRTQIAICPNNHEVH M A Y N K D 2 0 1 0 1 0 1 0 2 1 1 1 0 1 1 2 0 1 1 1 0 0 17 0 2057.9782 A4D275;O15143;C9JBJ7;C9K057;C9J4Z7;F8VXW2;C9JEY1;C9JQM8;C9JFG9;C9J6C8;C9JM51;F8WEB3;C9JTT6 A4D275 2 18 ARPC1B Actin-related protein 2/3 complex subunit 1B yes no 3 0.0018915 43.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5962500 0 5962500 5962500 0 5962500 0 0 0 1431 670 1475 3869 6095 6095 1 AYILNLVK VSDYAQMDRVLREERAYILNLVKQIKKTGC RVLREERAYILNLVKQIKKTGCNVLLIQKS R A Y V K Q 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 8 0 932.5695 B7Z9L0;A8K3C3;P50991;B7Z2F4;B7Z2Z8 B7Z9L0 225 232 CCT4 T-complex protein 1 subunit delta yes no 2 0.032325 58.167 1 4.7728 4.8384 NaN 1 Median 4.7728 4.8384 NaN 1 0 Median NaN NaN NaN 0 0 Median 12918000 2731500 10186000 12918000 2731500 10186000 0 0 0 1432 721 1476 3870 6096 6096 1 AYILVTPLK FSDEERKYMAINQKKAYILVTPLKSRKVIE AINQKKAYILVTPLKSRKVIEQRCMRYNLS K A Y L K S 1 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 1 0 1 1 0 0 9 0 1016.627 Q6P0N0 Q6P0N0 648 656 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.032349 52.716 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5095800 0 5095800 0 0 0 5095800 0 5095800 1433 1849 1477 3871;3872 6097;6098 6097 2 AYIQENLELVEK HGGGPTVTAGLPLPKAYIQENLELVEKGFS LPKAYIQENLELVEKGFSNLKKQIENARMF K A Y E K G 1 0 1 0 0 1 3 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 12 0 1447.7559 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 722 733 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.018669 40.616 1 1.6651 1.319 NaN 1 Median NaN NaN NaN 0 0 Median 1.6651 1.319 NaN 1 0 Median 2009400 522570 1486800 0 0 0 2009400 522570 1486800 1434 196 1478 3873 6099 6099 1 AYLEGTCVEWLR TQRKWEAARVAEQLRAYLEGTCVEWLRRYL QLRAYLEGTCVEWLRRYLENGKETLQRTDP R A Y L R R 1 1 0 0 1 0 2 1 0 0 2 0 0 0 0 0 1 1 1 1 0 0 12 0 1495.7129 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U3N9E1 157 168 HLA-A;HLA-C;HLA;HLA-Cw;HLA-A*31;MHC class I HLA-A;HLA-A*0226;HLA-A*33;HLA-A*02;HLA-DQB1;HLA-B;HLA-A2;HLC-C;HLA-B*5501 variant;HLA-CW;HLA-A*0225;HLAC;HLA-Cw*15P;HLA-A*03;HLA C*;HLA-B18;HLA-Cw*07;HLA-B*18 variant;HLA-Cw*0707;HLA-B*4202;HLA-B*1805;HLA-G;HLA -B;HLA-B41;MHC HLA class I histocompatibility antigen, A-29 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, B-59 alpha chain;HLA class I histocompatibility antigen, B-55 alpha chain;HLA class I histocompatibility antigen, B-54 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-41 alpha chain;HLA class I histocompatibility antigen, B-18 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;HLA class I histocompatibility antigen, Cw-1 alpha chain no no 2 0.039769 43.77 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1435 395;496 1479 3874 6100 6100 1 AYLFAHAVDFVPSEENNLVGTLK LANQKQQHLAFRDRRAYLFAHAVDFVPSEE DFVPSEENNLVGTLKISGYVRGQTLNVNRL R A Y L K I 3 0 2 1 0 0 2 1 1 0 3 1 0 2 1 1 1 0 1 3 0 0 23 0 2533.2853 Q2NL82;I3L1Q5 Q2NL82 251 273 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 3 3.2253E-08 55.705 3 2 0.8336 0.85624 45.633 5 Median 0.98422 0.97814 9.1108 3 0 Median 0.5593 0.44189 34.057 2 0 Median 63334000 36754000 26581000 32413000 15817000 16595000 30922000 20936000 9985400 1436 1776 1480 3875;3876;3877;3878;3879 6101;6102;6103;6104;6105;6106;6107;6108;6109;6110 6109 10 AYLPVNESFGFTADLR FEESQVAGTPMFVVKAYLPVNESFGFTADL YLPVNESFGFTADLRSNTGGQAFPQCVFDH K A Y L R S 2 1 1 1 0 0 1 1 0 0 2 0 0 2 1 1 1 0 1 1 0 0 16 0 1798.889 P13639;Q8TA90;B4DPU3 P13639 786 801 EEF2 Elongation factor 2 yes no 2 2.3337E-12 106.01 2 2 2.3523 2.0168 11.927 2 Median NaN NaN NaN 0 0 Median 2.3523 2.0168 11.927 2 0 Median 315910000 17562000 298350000 252950000 0 252950000 62956000 17562000 45394000 1437 1478 1481 3880;3881;3882;3883 6111;6112;6113;6114;6115;6116;6117 6111 7 AYPAAITILETAQK DARGMTPFMSAVSGRAYPAAITILETAQKI RAYPAAITILETAQKIAKAEISSSEKEEDV R A Y Q K I 4 0 0 0 0 1 1 0 0 2 1 1 0 0 1 0 2 0 1 0 0 0 14 0 1488.8188 E7EMW7;O95071 E7EMW7 1119 1132 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.00085746 57.836 1 1.6349 1.6363 NaN 1 Median 1.6349 1.6363 NaN 1 0 Median NaN NaN NaN 0 0 Median 7687900 3958200 3729700 7687900 3958200 3729700 0 0 0 1438 1218 1482 3884 6118 6118 1 AYPLADAHLTK ______________________________ VNPKAYPLADAHLTKKLLDLVQQSCNYKQL K A Y T K K 3 0 0 1 0 0 0 0 1 0 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1198.6346 Q6FHM6;B1AHD1;P55769 Q6FHM6 10 20 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2;3 1.8777E-05 105.4 4 3 0.80636 0.90415 8.631 7 Median 0.78216 0.9254 2.1602 4 0 Median 0.91459 0.78261 7.5327 3 0 Median 2610400000 1455900000 1154500000 2452700000 1375100000 1077600000 157710000 80803000 76902000 1439 812 1483 3885;3886;3887;3888;3889;3890;3891 6119;6120;6121;6122;6123;6124;6125;6126;6127;6128 6123 10 AYPVSGCFDYLSEDLPDTIHIGGR KGFINMQSVAKFVTKAYPVSGCFDYLSEDL YLSEDLPDTIHIGGRIAPKTVWDYVGKLKS K A Y G R I 1 1 0 3 1 0 1 3 1 2 2 0 0 1 2 2 1 0 2 1 0 0 24 0 2681.2432 Q9BTC0 Q9BTC0 1073 1096 DIDO1 Death-inducer obliterator 1 yes yes 3 1.1304E-05 36.9 2 1.8761 1.5292 0.6384 2 Median NaN NaN NaN 0 0 Median 1.8761 1.5292 0.6384 2 0 Median 23680000 7868000 15812000 0 0 0 23680000 7868000 15812000 1440 2002 1484 3892;3893 6129;6130;6131 6131 3 AYPYSQTGDDK VESKMLSALLTGVNRAYPYSQTGDDKVREQ GVNRAYPYSQTGDDKVREQIDTLFKVLHIV R A Y D K V 1 0 0 2 0 1 0 1 0 0 0 1 0 0 1 1 1 0 2 0 0 0 11 0 1243.5357 B2R5U7;Q03701 B2R5U7 493 503 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.00090132 71.614 1 1 0.94044 0.85959 10.898 2 Median 0.88867 0.92846 NaN 1 0 Median 0.99524 0.79584 NaN 1 0 Median 37034000 19449000 17585000 29972000 15822000 14149000 7062800 3626600 3436200 1441 836;1683 1485 3894;3895 6132;6133;6134 6132 3 AYQHGGVTGLSQY IDVALSQDSTYQGERAYQHGGVTGLSQY__ ERAYQHGGVTGLSQY_______________ R A Y Q Y - 1 0 0 0 0 2 0 3 1 0 1 0 0 0 0 1 1 0 2 1 0 0 13 0 1379.647 A0A024R7L5;A0A024R7L8;Q92900;B3KY55;A0A059XG73;A0A059XBJ6;A0A059XAM1 A0A024R7L5 1106 1118 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.0041266 61.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1442 231 1486 3896 6135 6135 1 AYSDPSTGEPATYGELQQR EETSRALSAPRADAKAYSDPSTGEPATYGE PSTGEPATYGELQQRCRPDQLTGLSLLPLS K A Y Q R C 2 1 0 1 0 2 2 2 0 0 1 0 0 0 2 2 2 0 2 0 0 0 19 0 2068.9338 Q15149;D3DWL0 Q15149 3317 3335 PLEC;PLEC1 Plectin yes no 2 2.3767E-22 150.11 2 1 2.044 2.1133 2.7895 3 Median 1.9879 2.1079 0.35846 2 0 Median 2.5793 2.2118 NaN 1 0 Median 69566000 24558000 45008000 61031000 22287000 38744000 8534800 2270700 6264100 1443 1754 1487 3897;3898;3899 6136;6137;6138;6139;6140;6141;6142 6138 6 AYSDQAIVNLLK KALLDNTKDKNTVVRAYSDQAIVNLLKMRQ VVRAYSDQAIVNLLKMRQGEEVFQSLSKIL R A Y L K M 2 0 1 1 0 1 0 0 0 1 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1333.7242 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2610 2621 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 2.4404E-05 100.25 2 2 2.8747 2.6323 22.599 2 Median 2.9851 3.0884 NaN 1 0 Median 2.7684 2.2435 NaN 1 0 Median 32150000 6240400 25909000 27689000 5571900 22117000 4460900 668490 3792500 1444 1205 1488 3900;3901;3902;3903 6143;6144;6145;6146;6147;6148;6149 6143 7 AYSEAHEISK ATGEKRATVVESSEKAYSEAHEISKEHMQP ESSEKAYSEAHEISKEHMQPTHPIRLGLAL K A Y S K E 2 0 0 0 0 0 2 0 1 1 0 1 0 0 0 2 0 0 1 0 0 0 10 0 1133.5353 B4DE78;B3KNB4;P61981;B4DHC4 B4DE78 113 122 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 2 9.4977E-12 128.27 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8159100 0 8159100 8159100 0 8159100 0 0 0 1445 912 1489 3904;3905;3906 6150;6151;6152 6150 3 AYTDAASLEVHLSTHTVK QHNKDKPFKCHNCHRAYTDAASLEVHLSTH DAASLEVHLSTHTVKHAKVYTCTICSRAYT R A Y V K H 3 0 0 1 0 0 1 0 2 0 2 1 0 0 0 2 3 0 1 2 0 0 18 0 1941.9796 D3DUR9;Q8TF68;R4GMR4 D3DUR9 411 428 ZNF384 Zinc finger protein 384 yes no 3 0.0035302 28.083 2 2.0051 1.6151 2.138 2 Median NaN NaN NaN 0 0 Median 2.0051 1.6151 2.138 2 0 Median 12897000 4431300 8465300 0 0 0 12897000 4431300 8465300 1446 1195 1490 3907;3908 6153;6154 6154 2 AYTPPEDLQSR EKKEPILVCPPLRSRAYTPPEDLQSRLESY LRSRAYTPPEDLQSRLESYVKEVFGSSLPS R A Y S R L 1 1 0 1 0 1 1 0 0 0 1 0 0 0 2 1 1 0 1 0 0 0 11 0 1275.6095 Q8N5N7 Q8N5N7 59 69 MRPL50 39S ribosomal protein L50, mitochondrial yes yes 2 0.00036279 77.677 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5363500 5363500 0 5363500 5363500 0 0 0 0 1447 1912 1491 3909;3910;3911;3912 6155;6156;6157;6158 6155 4 AYVDDTPAEQMK ETIMKYAEKLIQEGKAYVDDTPAEQMKAER EGKAYVDDTPAEQMKAEREQRIDSKHRKNP K A Y M K A 2 0 0 2 0 1 1 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 12 0 1366.6075 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 289 300 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 6.6621E-13 128.86 2 1 2.3918 2.4461 88.453 3 Plateau 2.3509 2.3605 5.7239 2 0 Median 0.6142 0.51091 NaN 1 0 Median 50354000 15348000 35006000 48089000 14104000 33985000 2265000 1244400 1020600 1448 1454 1492 3913;3914;3915 6159;6160;6161;6162 6160 1157 4 AYVEIEYEQETEPVAK HKGKMPLRGPLQRKRAYVEIEYEQETEPVA YVEIEYEQETEPVAKAKTT___________ R A Y A K A 2 0 0 0 0 1 5 0 0 1 0 1 0 0 1 0 1 0 2 2 0 0 16 0 1896.8993 Q9BXY0 Q9BXY0 281 296 MAK16 Protein MAK16 homolog yes yes 2 1.2271E-24 142.1 2 1 0.97986 1.0943 5.7897 2 Median 0.97986 1.0943 5.7897 2 0 Median NaN NaN NaN 0 0 Median 126380000 56319000 70066000 118230000 56319000 61914000 8152300 0 8152300 1449 2016 1493 3916;3917;3918 6163;6164;6165;6166;6167;6168;6169;6170;6171 6165 9 AYVSLFMR WLVRDLRGKSEKEFKAYVSLFMRHLCEPGA KSEKEFKAYVSLFMRHLCEPGADGAETFAD K A Y M R H 1 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 8 0 985.50552 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;Q659F1;Q659D0;Q6ZU36;Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4 F5GWX5 1451 1458 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.0056993 69.176 1 2 1.2157 1.1723 0.48364 2 Median 1.0944 1.1763 NaN 1 0 Median 1.3504 1.1683 NaN 1 0 Median 51930000 24669000 27262000 47142000 23550000 23592000 4788300 1118400 3669900 1450 515;1701 1494 3919;3920;3921 6172;6173;6174;6175 6172 367 4 AYVSTLMGVPGR LTVDTSLQNGRMSIKAYVSTLMGVPGRTMG SIKAYVSTLMGVPGRTMGVMFTPLTVKYAY K A Y G R T 1 1 0 0 0 0 0 2 0 0 1 0 1 0 1 1 1 0 1 2 0 0 12 0 1249.6489 B4DMT5;B3KSH1;O00303;B4DEW9;A0A0D9SEZ9;Q9BX72 B4DMT5 165 176 EIF3F;IFP38 Eukaryotic translation initiation factor 3 subunit F yes no 2 8.7865E-05 90.629 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5125700 0 5125700 5125700 0 5125700 0 0 0 1451 939 1495 3922 6176 6176 767 1 AYVVLGQFLVLK GEVLGKKLEERGFDKAYVVLGQFLVLKKDE FDKAYVVLGQFLVLKKDEDLFREWLKDTCG K A Y L K K 1 0 0 0 0 1 0 1 0 0 3 1 0 1 0 0 0 0 1 3 0 0 12 0 1348.8119 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 42 53 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 1.0171E-12 131.22 7 2 0.89198 0.87135 12.386 7 Median 0.83882 0.92873 10.838 5 0 Median 0.91144 0.79796 1.2556 2 0 Median 1112300000 568460000 543810000 551280000 277610000 273670000 560990000 290850000 270140000 1452 181 1496 3923;3924;3925;3926;3927;3928;3929;3930;3931 6177;6178;6179;6180;6181;6182;6183;6184;6185;6186;6187;6188;6189;6190;6191;6192;6193;6194 6192 18 CAGPTPEAELQALAR GNLLASDRNPPTGLRCAGPTPEAELQALAR CAGPTPEAELQALARDNTQLLINQLWQLPT R C A A R D 4 1 0 0 1 1 2 1 0 0 2 0 0 0 2 0 1 0 0 0 0 0 15 0 1582.7773 Q15050 Q15050 52 66 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 3.4534E-16 128.01 2 1 1.0273 0.85221 NaN 1 Median NaN NaN NaN 0 0 Median 1.0273 0.85221 NaN 1 0 Median 26070000 5552300 20518000 15026000 0 15026000 11044000 5552300 5491500 1453 1750 1497 3932;3933;3934 6195;6196;6197;6198 6195 4 CAPMSDLTDLK EKMKAMKRSRTWGQKCAPMSDLTDLKSLPD WGQKCAPMSDLTDLKSLPDTELMKDTARGQ K C A L K S 1 0 0 2 1 0 0 0 0 0 2 1 1 0 1 1 1 0 0 0 0 0 11 0 1249.5683 P46013 P46013 958 968 MKI67 Antigen KI-67 yes yes 2 0.0066641 54.416 1 1 2.4731 2.0262 NaN 1 Median NaN NaN NaN 0 0 Median 2.4731 2.0262 NaN 1 0 Median 2583300 826700 1756600 0 0 0 2583300 826700 1756600 1454 1569 1498 3935;3936 6199;6200 6200 1328 2 CCLTYCFNKPEDK GVFMASHFDRHYCGKCCLTYCFNKPEDK__ GKCCLTYCFNKPEDK_______________ K C C D K - 0 0 1 1 3 0 1 0 0 0 1 2 0 1 1 0 1 0 1 0 0 0 13 1 1733.7211 Q5RKT7;B2RDW1;P62979;Q8WYN9 Q5RKT7 144 156 RPS27A;HEL112 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes no 2;3 1.5176E-05 125.74 2 2 0.92002 1.0436 11.24 4 Linear 0.84652 0.97869 6.6781 2 0 Median 0.9603 0.81517 0.38535 2 0 Median 158320000 75678000 82644000 130820000 61701000 69124000 27498000 13977000 13521000 1455 891 1499 3937;3938;3939;3940 6201;6202;6203;6204;6205;6206;6207 6202 6 CDFTQMSQYFK EMTNEEKNIITNLSKCDFTQMSQYFKAQTE NLSKCDFTQMSQYFKAQTEARKQMSKEEKL K C D F K A 0 0 0 1 1 2 0 0 0 0 0 1 1 2 0 1 1 0 1 0 0 0 11 0 1453.6006 P11387;B9EG90 P11387 300 310 TOP1 DNA topoisomerase 1 yes no 2 0.00017689 84.213 3 1 1.3334 1.218 71.446 2 Median 1.9825 2.0186 NaN 1 0 Median 0.89686 0.73491 NaN 1 0 Median 24803000 7264100 17539000 19805000 4458700 15346000 4999000 2805400 2193500 1456 1470 1500 3941;3942;3943;3944 6208;6209;6210;6211;6212 6210 1184 5 CEEILHK QTKRSSRRQSLELQKCEEILHKIVKYRFSW RQSLELQKCEEILHKIVKYRFSWPFREPVT K C E H K I 0 0 0 0 1 0 2 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 927.4484 Q9UIG0 Q9UIG0 1348 1354 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.017962 105.12 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1457 2103 1501 3945 6213 6213 1 CEELLEK KFVIHCNSPVWGADKCEELLEKTVKNCLAL SPVWGADKCEELLEKTVKNCLALADDKKLK K C E E K T 0 0 0 0 1 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 919.43208 O75367;Q59FH0;B4DJC3 O75367 286 292 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.00077823 139.28 2 2 1.1555 1.1208 7.478 4 Median 1.0592 1.2003 3.6362 2 0 Median 1.2548 1.0612 1.6716 2 0 Median 392540000 182930000 209600000 278500000 133250000 145250000 114040000 49686000 64352000 1458 1401 1502 3946;3947;3948;3949 6214;6215;6216;6217;6218;6219;6220 6218 7 CEGINISGNFYR VAKQVLLGRKVVVVRCEGINISGNFYRNKL VVRCEGINISGNFYRNKLKYLAFLRKRMNT R C E Y R N 0 1 2 0 1 0 1 2 0 2 0 0 0 1 0 1 0 0 1 0 0 0 12 0 1428.6456 Q53H34;P40429;Q9BSQ6;Q5QTS3;M0QYS1;B4DNC8 Q53H34 38 49 RPL13A 60S ribosomal protein L13a yes no 2 1.4895E-13 136.96 2 2 0.82341 0.77627 19.931 4 Median 0.83777 0.89219 1.7885 2 0 Median 0.78281 0.64025 9.3498 2 0 Median 96352000 53242000 43110000 73691000 40490000 33201000 22660000 12751000 9909000 1459 1558 1503 3950;3951;3952;3953 6221;6222;6223;6224;6225;6226;6227 6223 7 CEIDPMFQK EQNINNLNVSEADRKCEIDPMFQKTAASFD SEADRKCEIDPMFQKTAASFDECSTAGVFL K C E Q K T 0 0 0 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 9 0 1166.51 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 239 247 NCAPH Condensin complex subunit 2 yes no 2 0.0093191 51.346 1 1.0153 1.0268 NaN 1 Median 1.0153 1.0268 NaN 1 0 Median NaN NaN NaN 0 0 Median 8863100 4702900 4160200 8863100 4702900 4160200 0 0 0 1460 740 1504 3954 6228 6228 573 1 CESAFLSK YARTDGKVFQFLNAKCESAFLSKRNPRQIN FQFLNAKCESAFLSKRNPRQINWTVLYRRK K C E S K R 1 0 0 0 1 0 1 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 8 0 940.43242 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 36 43 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 2 0.0021394 102.51 2 2 0.90744 0.90511 24.927 4 Median 0.63551 0.72635 1.2415 2 0 Median 1.3032 1.1184 0.0464 2 0 Median 490000000 262340000 227660000 288960000 175490000 113470000 201030000 86849000 114180000 1461 1140 1505 3955;3956;3957;3958 6229;6230;6231;6232;6233;6234;6235;6236;6237 6231 9 CFIVGADNVGSK NYFLKIIQLLDDYPKCFIVGADNVGSKQMQ YPKCFIVGADNVGSKQMQQIRMSLRGKAVV K C F S K Q 1 0 1 1 1 0 0 2 0 1 0 1 0 1 0 1 0 0 0 2 0 0 12 0 1265.6074 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;G3V210;F8VZS0;Q8NHW5;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 27 38 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 1.1287E-05 107.45 2 1 1.1236 1.1535 6.3274 2 Median 1.1236 1.1535 6.3274 2 0 Median NaN NaN NaN 0 0 Median 43468000 24087000 19381000 40950000 21570000 19381000 2517500 2517500 0 1462 345 1506 3959;3960;3961 6238;6239;6240;6241;6242;6243 6242 6 CGAALAGHQLIR CSLLRLQETLSAADRCGAALAGHQLIRGLG ADRCGAALAGHQLIRGLGQECVLSSSPAVL R C G I R G 3 1 0 0 1 1 0 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1265.6663 P78527;B4DL41 P78527 25 36 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 3.7016E-05 97.431 1 1 0.31244 0.27082 NaN 1 Median NaN NaN NaN 0 0 Median 0.31244 0.27082 NaN 1 0 Median 9205100 8548700 656430 6700100 6700100 0 2505000 1848600 656430 1463 1665 1507 3962;3963 6244;6245 6244 2 CGDGGQLVLCDR AKGEGKRQSEDECFRCGDGGQLVLCDRKFC CFRCGDGGQLVLCDRKFCTKAYHLSCLGLG R C G D R K 0 1 0 2 2 1 0 3 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1348.5864 O96028 O96028 1245 1256 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.0052988 62.408 1 1 1.3902 1.1672 NaN 1 Median NaN NaN NaN 0 0 Median 1.3902 1.1672 NaN 1 0 Median 9488800 6961100 2527700 5238700 5238700 0 4250200 1722500 2527700 1464 1435 1508 3964;3965 6246;6247 6246 2 CGFCHVGEEENEAR DRSPHRSSPSDTRPKCGFCHVGEEENEARG KCGFCHVGEEENEARGKLHIFNAKKAAAHY K C G A R G 1 1 1 0 2 0 4 2 1 0 0 0 0 1 0 0 0 0 0 1 0 0 14 0 1692.6621 A0A0D9SGE8;Q8IWS0;Q5JRC6 A0A0D9SGE8 213 226 PHF6 PHD finger protein 6 yes no 2;3 6.6107E-05 74.944 1 2 0.96352 0.80813 4.122 2 Median NaN NaN NaN 0 0 Median 0.96352 0.80813 4.122 2 0 Median 17092000 8501200 8590500 0 0 0 17092000 8501200 8590500 1465 528 1509 3966;3967;3968 6248;6249;6250;6251 6250 4 CGGSELNFR ______________________________ NIRVVRCGGSELNFRRAVFSADSKYIFCVS R C G F R R 0 1 1 0 1 0 1 2 0 0 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1038.4553 A8K330;Q8IWA0;F8WE20;F8WC81 A8K330 12 20 WDR75 WD repeat-containing protein 75 yes no 2 0.034146 44.377 1 1.1274 0.98351 NaN 1 Median NaN NaN NaN 0 0 Median 1.1274 0.98351 NaN 1 0 Median 3527400 1751100 1776300 0 0 0 3527400 1751100 1776300 1466 716 1510 3969 6252;6253 6253 2 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK LGGFEITPPVVLRLKCGSGPVHISGQHLVA EEDAESEDEEEEDVKLLSISGKRSAPGGGS K C G V K L 2 0 0 3 1 1 8 3 2 1 1 1 0 0 1 3 0 0 0 4 0 0 31 0 3379.4634 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;E5RI98;Q9NX34 A0A0S2Z4G7 104 134 NPM1 Nucleophosmin no no 4 0.02816 22.008 1 1.4933 1.1979 NaN 1 Median NaN NaN NaN 0 0 Median 1.4933 1.1979 NaN 1 0 Median 7576100 2772600 4803500 0 0 0 7576100 2772600 4803500 1467 559;1213;2078 1511 3970 6254 6254 1 CGSVLVR KIGKPHTVPCKVTGRCGSVLVRLIPAPRGT VPCKVTGRCGSVLVRLIPAPRGTGIVSAPV R C G V R L 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 7 0 789.41671 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PMM9;E9PQD7;I3L404;E9PM36 P15880 188 194 RPS2;rps2 40S ribosomal protein S2 yes no 2 0.0077251 128.75 2 1 0.93034 1.0233 26.087 3 Plateau 0.92733 1.0391 2.1706 2 0 Median 0.81024 0.66188 NaN 1 0 Median 118620000 62213000 56409000 104470000 54873000 49595000 14154000 7340200 6813500 1468 1485 1512 3971;3972;3973 6255;6256;6257;6258;6259;6260 6259 6 CGVCEVCQQPECGK KDDREDKENAFKRRRCGVCEVCQQPECGKC RCGVCEVCQQPECGKCKACKDMVKFGGSGR R C G G K C 0 0 0 0 4 2 2 2 0 0 0 1 0 0 1 0 0 0 0 2 0 0 14 0 1709.663 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 715 728 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0043219 45.653 1 0.95752 0.77612 NaN 1 Median NaN NaN NaN 0 0 Median 0.95752 0.77612 NaN 1 0 Median 2742300 1437500 1304800 0 0 0 2742300 1437500 1304800 1469 222 1513 3974 6261;6262 6262 2 CGVISPR RAGKIVVNLTGRLNKCGVISPRFDVQLKDL NLTGRLNKCGVISPRFDVQLKDLEKWQNNL K C G P R F 0 1 0 0 1 0 0 1 0 1 0 0 0 0 1 1 0 0 0 1 0 0 7 0 787.40106 B2R4W8;P62244;I3L3P7;A8K7H3 B2R4W8 72 78 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 0.014426 100.07 1 1 0.87523 0.83764 10.301 2 Median 0.70298 0.7788 NaN 1 0 Median 1.0897 0.90093 NaN 1 0 Median 75171000 44510000 30661000 63812000 39098000 24713000 11360000 5411600 5948000 1470 831 1514 3975;3976 6263;6264;6265;6266 6263 4 CGVQSFYTPR YTFNTHKAQHTFCKRCGVQSFYTPRSNPGG TFCKRCGVQSFYTPRSNPGGFGIAPHCLDE R C G P R S 0 1 0 0 1 1 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 0 10 0 1213.555 Q7Z7K6 Q7Z7K6 219 228 CENPV Centromere protein V yes yes 2 2.7898E-09 126.07 2 1 1.4065 1.3035 22.112 2 Median 1.094 1.1148 NaN 1 0 Median 1.8084 1.5241 NaN 1 0 Median 33333000 9624400 23708000 28560000 7990800 20569000 4772700 1633600 3139100 1471 1882 1515 3977;3978;3979 6267;6268;6269;6270 6268 4 CHTPPLYR LREYKVVGRCLPTPKCHTPPLYRMRIFAPN RCLPTPKCHTPPLYRMRIFAPNHVVAKSRF K C H Y R M 0 1 0 0 1 0 0 0 1 0 1 0 0 0 2 0 1 0 1 0 0 0 8 0 1042.5018 M0R117;B4DM74;Q02543;B4DM94;B4DUV3;Q53HD3;Q32XH3 M0R117 22 29 RPL18A 60S ribosomal protein L18a yes no 2;3 0.0015837 107.66 3 2 0.83745 0.78056 12.404 5 Median 0.83146 0.95117 12.368 3 0 Median 0.88742 0.76271 3.2723 2 0 Median 403650000 224110000 179540000 344800000 192970000 151830000 58844000 31138000 27706000 1472 1003 1516 3980;3981;3982;3983;3984 6271;6272;6273;6274;6275;6276;6277;6278;6279 6277 9 CHVQTIQLCR LSMCFLFSTFPRTGKCHVQTIQLCRRLTVE PRTGKCHVQTIQLCRRLTVEFMHYIIAARA K C H C R R 0 1 0 0 2 2 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1313.6333 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7BYY8 B5MCF9 153 162 PES1 Pescadillo homolog yes no 2 0.041207 38.293 1 1.1107 0.98193 NaN 1 Median NaN NaN NaN 0 0 Median 1.1107 0.98193 NaN 1 0 Median 1364500 545520 818980 0 0 0 1364500 545520 818980 1473 886 1517 3985 6280;6281 6280 2 CIAPETLR KRRYTIIPLNKISARCIAPETLRVAQNLVG LNKISARCIAPETLRVAQNLVGPDNVHVAL R C I L R V 1 1 0 0 1 0 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 8 0 958.4906 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 585 592 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0049299 87.323 3 0.69943 0.71586 NaN 1 Median 0.69943 0.71586 NaN 1 0 Median NaN NaN NaN 0 0 Median 41507000 14902000 26605000 41507000 14902000 26605000 0 0 0 1474 69 1518 3986;3987;3988 6282;6283;6284 6284 3 CIIPNHEK KLMATLRNTNPNFVRCIIPNHEKKAGKLDP TNPNFVRCIIPNHEKKAGKLDPHLVLDQLR R C I E K K 0 0 1 0 1 0 1 0 1 2 0 1 0 0 1 0 0 0 0 0 0 0 8 0 1009.5015 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;P35580 A0A024R1N1 671 678 MYH9;MYH11;MYH10 Myosin-9;Myosin-11;Myosin-10 no no 2;3 0.0076936 81.89 3 1.4787 1.5266 0.82557 2 Median 1.4787 1.5266 0.82557 2 0 Median NaN NaN NaN 0 0 Median 46452000 14475000 31977000 46452000 14475000 31977000 0 0 0 1475 81;1544 1519 3989;3990;3991 6285;6286;6287 6286 3 CITDPQTGLCLLPLK PNTEENLTYLQLMERCITDPQTGLCLLPLK CITDPQTGLCLLPLKEKKRERKTSSKSSVR R C I L K E 0 0 0 1 2 1 0 1 0 1 4 1 0 0 2 0 2 0 0 0 0 0 15 0 1727.895 Q15149;D3DWL0;Q96IE3 Q15149 4245 4259 PLEC;PLEC1 Plectin yes no 2 0.016147 45.661 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1678600 0 1678600 0 0 0 1678600 0 1678600 1476 1754 1520 3992 6288 6288 1 CIVQTTSWSQCSK GMEPRILYNPLQGQKCIVQTTSWSQCSKTC QKCIVQTTSWSQCSKTCGTGISTRVTNDNP K C I S K T 0 0 0 0 2 2 0 0 0 1 0 1 0 0 0 3 2 1 0 1 0 0 13 0 1583.7072 B4DI61;Q6FI18;O00622;Q53FA4;Q9UID7 B4DI61 205 217 CYR61 Protein CYR61 yes no 2 1.5942E-06 104.52 3 2 1.3469 1.0849 2.0299 2 Median NaN NaN NaN 0 0 Median 1.3469 1.0849 2.0299 2 0 Median 18764000 8754700 10009000 7496600 3731500 3765100 11267000 5023200 6243900 1477 979 1521 3993;3994;3995;3996;3997 6289;6290;6291;6292;6293;6294 6289 6 CIYFEAK LFVINEVCEMKNCNKCIYFEAKKKQDLYMW CEMKNCNKCIYFEAKKKQDLYMWLSNSPHG K C I A K K 1 0 0 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 929.43169 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 115 121 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.028572 71.715 1 2 1.3425 1.0767 11.074 3 Median 0.83317 0.89733 NaN 1 0 Median 1.3434 1.0864 1.2713 2 0 Median 55615000 27752000 27863000 40877000 21294000 19584000 14738000 6458800 8279200 1478 1934 1522 3998;3999;4000 6295;6296;6297 6295 3 CLLAASPENEAGGLK GCAFAQFMTQEAAQKCLLAASPENEAGGLK CLLAASPENEAGGLKLDGRQLKVDLAVTRD K C L L K L 3 0 1 0 1 0 2 2 0 0 3 1 0 0 1 1 0 0 0 0 0 0 15 0 1528.7555 A0A024R753;Q9NW13;B4DJ90 A0A024R753 392 406 RBM28 RNA-binding protein 28 yes no 2 0.00020485 76.143 2 2 1.1305 0.88807 9.5867 3 Median 0.77791 0.81229 NaN 1 0 Median 1.1728 0.93472 7.2396 2 0 Median 23127000 11552000 11576000 14826000 8062100 6763900 8301500 3489600 4811900 1479 214 1523 4001;4002;4003;4004 6298;6299;6300;6301;6302;6303;6304 6301 7 CLLIDYNPDSQELDFR PSINVHKVNLNTIKRCLLIDYNPDSQELDF LLIDYNPDSQELDFRHYSIKVVPVGASRGM R C L F R H 0 1 1 3 1 1 1 0 0 1 3 0 0 1 1 1 0 0 1 0 0 0 16 0 1996.92 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3 A0A0A6YYI3 180 195 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.019813 28.806 2 1.1642 1.0149 2.718 2 Median NaN NaN NaN 0 0 Median 1.1642 1.0149 2.718 2 0 Median 5098100 2560600 2537400 0 0 0 5098100 2560600 2537400 1480 493 1524 4005;4006 6305;6306 6306 2 CLSVSPGGQWLVSGSDDGSLR TCQALVYRGHSDLVRCLSVSPGGQWLVSGS GGQWLVSGSDDGSLRLWEVATARCVRTVPV R C L L R L 0 1 0 2 1 1 0 4 0 0 3 0 0 0 1 5 0 1 0 2 0 0 21 0 2176.0219 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 418 438 BOP1 Ribosome biogenesis protein BOP1 yes no 2 4.4224E-06 61.409 1 1 0.79133 0.6871 NaN 1 Median NaN NaN NaN 0 0 Median 0.79133 0.6871 NaN 1 0 Median 6151300 4754400 1396900 2676500 2676500 0 3474800 2077900 1396900 1481 1726 1525 4007;4008 6307;6308 6307 2 CMPAPEEIVEELPASK GGGKDGSVTGTKRLRCMPAPEEIVEELPAS MPAPEEIVEELPASKKQRVAPRARGKSSEP R C M S K K 2 0 0 0 1 0 4 0 0 1 1 1 1 0 3 1 0 0 0 1 0 0 16 0 1798.8481 P46013 P46013 3014 3029 MKI67 Antigen KI-67 yes yes 2 0.00067733 45.359 2 1.6545 1.7436 19.9 2 Median 1.6545 1.7436 19.9 2 0 Median NaN NaN NaN 0 0 Median 35384000 13559000 21826000 35384000 13559000 21826000 0 0 0 1482 1569 1526 4009;4010 6309;6310 6310 1329 2 CMQLTDFILK DGPCTQVRRQAMPFKCMQLTDFILKFPHSA AMPFKCMQLTDFILKFPHSAHQKYVRQAWQ K C M L K F 0 0 0 1 1 1 0 0 0 1 2 1 1 1 0 0 1 0 0 0 0 0 10 0 1267.6305 E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914;A8K3Q9 A8K3Q9 54 63 RPL14 60S ribosomal protein L14 no no 2 1.482E-08 119.75 1 1.1714 1.2293 NaN 1 Median 1.1714 1.2293 NaN 1 0 Median NaN NaN NaN 0 0 Median 24031000 10866000 13165000 24031000 10866000 13165000 0 0 0 1483 645;725 1527 4011 6311 6311 502 1 CNCKPTDENPCGFDSECLNR GKVQIYTADISEIPKCNCKPTDENPCGFDS TDENPCGFDSECLNRMLMFECHPQVCPAGE K C N N R M 0 1 3 2 4 0 2 1 0 0 1 1 0 1 2 1 1 0 0 0 0 0 20 1 2471.9563 O96028 O96028 1016 1035 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 3 0.014396 22.24 2 1.7218 1.4482 1.496 2 Median NaN NaN NaN 0 0 Median 1.7218 1.4482 1.496 2 0 Median 6774000 2603200 4170800 0 0 0 6774000 2603200 4170800 1484 1435 1528 4012;4013 6312;6313 6312 2 CNELQDIEK TPEEVIEYSAVFWERCNELQDIEKIMAQIE AVFWERCNELQDIEKIMAQIERGEARIQRR R C N E K I 0 0 1 1 1 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1147.5179 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 891 899 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 2.5262E-05 113.71 2 1 1.9753 1.9358 54.514 3 Median 1.9142 1.918 1.307 2 0 Median 6.2355 4.9302 NaN 1 0 Median 34714000 11928000 22786000 30569000 11247000 19322000 4144500 680940 3463600 1485 1391 1529 4014;4015;4016 6314;6315;6316 6314 3 CNTLITLIER DWFLKSRTAMELQRRCNTLITLIERENMEL ELQRRCNTLITLIERENMELEEKEKAEKKK R C N E R E 0 1 1 0 1 0 1 0 0 2 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1231.6595 O60264;B7ZAX9;B4DZC0 O60264 1001 1010 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.1573E-05 104.05 3 2 1.8898 1.8628 NaN 1 Median 1.8898 1.8628 NaN 1 0 Median NaN NaN NaN 0 0 Median 27768000 3362900 24405000 19366000 3362900 16003000 8401500 0 8401500 1486 1391 1530 4017;4018;4019;4020;4021 6317;6318;6319;6320;6321;6322 6319 6 CNVQFNLLDPLK SPYDAGADYLRACPKCNVQFNLLDPLKYHM CPKCNVQFNLLDPLKYHMKHCCPDMITKFL K C N L K Y 0 0 2 1 1 1 0 0 0 0 3 1 0 1 1 0 0 0 0 1 0 0 12 0 1459.7493 Q8ND82;Q9UJJ2 Q8ND82 242 253 ZNF280C Zinc finger protein 280C yes no 2 0.0077781 48.284 1 0.5375 0.43563 NaN 1 Median NaN NaN NaN 0 0 Median 0.5375 0.43563 NaN 1 0 Median 2688100 1739200 948900 0 0 0 2688100 1739200 948900 1487 1924 1531 4022 6323 6323 1 CNYNCPHANEAAFPFYR GETFSKNVMMIQSCKCNYNCPHANEAAFPF YNCPHANEAAFPFYRLFNDIHKFRD_____ K C N Y R L 3 1 3 0 2 0 1 0 1 0 0 0 0 2 2 0 0 0 2 0 0 0 17 0 2129.8836 B4DI61;Q6FI18;O00622;Q53FA4;Q9UID7 B4DI61 331 347 CYR61 Protein CYR61 yes no 3 3.169E-05 59.728 2 1.1837 1.0177 0.24022 2 Median NaN NaN NaN 0 0 Median 1.1837 1.0177 0.24022 2 0 Median 8162800 3580900 4581800 0 0 0 8162800 3580900 4581800 1488 979 1532 4023;4024 6324;6325;6326 6326 3 CPEALFQPSFLGMESCGIHETTFNSIMK LPDGQVITIGNERFRCPEALFQPSFLGMES ESCGIHETTFNSIMKCDVDIRKDLYANTVL R C P M K C 1 0 1 0 2 1 3 2 1 2 2 1 2 3 2 3 2 0 0 0 0 0 28 0 3230.4545 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;F1BXA6;A4UCT3;A5GZ75;P63261;B4E3A4;B4DVQ0;V9HVZ7 P63261 257 284 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 3 2.6295E-10 50.857 1 1 1.9131 1.8397 114.56 2 Median 3.6824 4.1356 NaN 1 0 Median 0.99388 0.81833 NaN 1 0 Median 145430000 39186000 106240000 116710000 24810000 91898000 28719000 14376000 14343000 1489 1624;1656;2186 1533 4025;4026 6327;6328 6328 1407;1408 2 CPNLTYLNLSGNK SDNIISGGLEVLAEKCPNLTYLNLSGNKIK EKCPNLTYLNLSGNKIKDLSTVEALQNLKN K C P N K I 0 0 3 0 1 0 0 1 0 0 3 1 0 0 1 1 1 0 1 0 0 0 13 0 1492.7344 Q53F20;Q9BTT0;E9PPH5;Q5TB19;B4E0D5;E9PLC4 Q53F20 87 99 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 0.032676 45.661 1 1.2759 1.0373 NaN 1 Median NaN NaN NaN 0 0 Median 1.2759 1.0373 NaN 1 0 Median 2693700 1012800 1680900 0 0 0 2693700 1012800 1680900 1490 1784 1534 4027 6329;6330 6330 2 CPQIVIAFYEER TDEADLVLAKEANVKCPQIVIAFYEERLTW NVKCPQIVIAFYEERLTWHAYPEDAENKEK K C P E R L 1 1 0 0 1 1 2 0 0 2 0 0 0 1 1 0 0 0 1 1 0 0 12 0 1523.7442 V9HWG0;P45973;Q6I9T7;A4D177;Q13185 V9HWG0 160 171 HEL25;CBX5;CBX3 Chromobox protein homolog 5;Chromobox protein homolog 3 no no 2 2.763E-08 137.98 2 1 0.59942 0.62074 NaN 1 Median 0.59942 0.62074 NaN 1 0 Median NaN NaN NaN 0 0 Median 40444000 34427000 6017200 32137000 26120000 6017200 8306600 8306600 0 1491 1568;662 1535 4028;4029;4030 6331;6332;6333 6332 3 CPQVEEAIVQSGQK VVLEVLDARDPLGCRCPQVEEAIVQSGQKK RCPQVEEAIVQSGQKKLVLILNKSDLVPKE R C P Q K K 1 0 0 0 1 3 2 1 0 1 0 1 0 0 1 1 0 0 0 2 0 0 14 0 1571.7614 A0A024R2Z6;Q9BVP2 A0A024R2Z6 146 159 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 1.8954E-29 168.02 2 2 0.89518 0.82075 12.141 4 Median 0.70951 0.7368 6.3382 2 0 Median 1.1176 0.89731 3.6901 2 0 Median 59625000 33502000 26123000 41506000 25707000 15799000 18119000 7794900 10324000 1492 125 1536 4031;4032;4033;4034 6334;6335;6336;6337;6338;6339;6340;6341;6342 6335 9 CPVICMVEVR C P V R 0 1 0 0 2 0 1 0 0 1 0 0 1 0 1 0 0 0 0 3 0 0 10 0 1261.5981 REV__Q7Z2K2 yes no 2 0.022158 41.979 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6859100 0 6859100 6859100 0 6859100 0 0 0 + 1493 2164 1537 4035 6343 6343 2009 1 CQNILQGNFKPDFYLK ILNQGQLASIFLDQKCQNILQGNFKPDFYL QNILQGNFKPDFYLKYIQKDLRLAIALGDA K C Q L K Y 0 0 2 1 1 2 0 1 0 1 2 2 0 2 1 0 0 0 1 0 0 0 16 1 1983.9877 D3DUE6;K7EMM8;D3DUE7;Q49A26 D3DUE7 502 517 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 3 0.00014834 54.237 1 1.5796 1.3536 NaN 1 Median NaN NaN NaN 0 0 Median 1.5796 1.3536 NaN 1 0 Median 8530900 3008400 5522500 0 0 0 8530900 3008400 5522500 1494 1194;1193 1538 4036 6344 6344 1 CSEGSFLLTTFPR VEFSGKPAARKALDRCSEGSFLLTTFPRPV DRCSEGSFLLTTFPRPVTVEPMDQLDDEEG R C S P R P 0 1 0 0 1 0 1 1 0 0 2 0 0 2 1 2 2 0 0 0 0 0 13 0 1513.7235 A8K525;A0A0S2Z4Z9;Q15233;H7C367 A8K525 208 220 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.0001555 85.813 2 1.3197 1.3257 NaN 1 Median 1.3197 1.3257 NaN 1 0 Median NaN NaN NaN 0 0 Median 12263000 8146800 4116100 12263000 8146800 4116100 0 0 0 1495 573 1539 4037;4038 6345;6346;6347;6348 6346 4 CSNPLDTSVK ELRGLGLSPDLVVCRCSNPLDTSVKEKISM LVVCRCSNPLDTSVKEKISMFCHVEPEQVI R C S V K E 0 0 1 1 1 0 0 0 0 0 1 1 0 0 1 2 1 0 0 1 0 0 10 0 1119.523 P17812;B4E1E0;B4DMB5;B7Z9C4 P17812 218 227 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.0041025 65.305 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1496 1494 1540 4039 6349 6349 1 CSQDQGVLASELAQNK ESPRCQPKPSEEAPKCSQDQGVLASELAQN SQDQGVLASELAQNKEELTPGAPQHQLPPV K C S N K E 2 0 1 1 1 3 1 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 16 0 1746.8207 Q9H6F5 Q9H6F5 127 142 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 1.3323E-24 141.37 2 2 0.56964 0.51622 29.533 4 Median 0.65696 0.67738 7.8041 2 0 Median 0.51463 0.40881 2.371 2 0 Median 58931000 36783000 22147000 23316000 12894000 10422000 35614000 23889000 11725000 1497 2037 1541 4040;4041;4042;4043 6350;6351;6352;6353;6354;6355;6356;6357;6358;6359 6358 10 CTGGEVGATSALAPK PPKFDPNEIKVVYLRCTGGEVGATSALAPK CTGGEVGATSALAPKIGPLGLSPKKVGDDI R C T P K I 3 0 0 0 1 0 1 3 0 0 1 1 0 0 1 1 2 0 0 1 0 0 15 0 1417.6871 P30050;Q59FI9;D3DS95 P30050 17 31 RPL12;hCG_21173 60S ribosomal protein L12 yes no 2 6.0219E-07 114.72 2 1 0.95392 1.0447 7.8409 3 Plateau 0.90779 1.0195 6.7341 2 0 Median 1.1305 0.91524 NaN 1 0 Median 208490000 100720000 107770000 184930000 89900000 95035000 23557000 10822000 12734000 1498 1532 1542 4044;4045;4046 6360;6361;6362;6363;6364;6365;6366 6361 7 CTLCSQPGATIGCEIK IKTVLQEIKRGKRMKCTLCSQPGATIGCEI TLCSQPGATIGCEIKACVKTYHYHCGVQDK K C T I K A 1 0 0 0 3 1 1 2 0 2 1 1 0 0 1 1 2 0 0 0 0 0 16 0 1793.811 A0A0D9SGE8;Q8IWS0;Q5JRC6;B4E138 A0A0D9SGE8 281 296 PHF6 PHD finger protein 6 yes no 2 0.0001139 78.324 1 2 1.0816 0.8756 7.365 2 Median NaN NaN NaN 0 0 Median 1.0816 0.8756 7.365 2 0 Median 19111000 6543300 12567000 5164900 0 5164900 13946000 6543300 7402600 1499 528 1543 4047;4048;4049 6367;6368;6369;6370;6371;6372;6373 6370 7 CVEVETDVVSNTSGSAR QEDLRVDGRGREDYRCVEVETDVVSNTSGS EVETDVVSNTSGSARVKLGHTDILVGVKAE R C V A R V 1 1 1 1 1 0 2 1 0 0 0 0 0 0 0 3 2 0 0 4 0 0 17 0 1808.8211 B2RDZ9;A0A024R2P7;Q15024;B4DIU0 B2RDZ9 34 50 EXOSC7 Exosome complex component RRP42 yes no 2 8.8619E-05 61.212 2 1.1219 0.98431 10.412 2 Median NaN NaN NaN 0 0 Median 1.1219 0.98431 10.412 2 0 Median 5017600 2569800 2447800 0 0 0 5017600 2569800 2447800 1500 120 1544 4050;4051 6374;6375;6376 6375 3 CVGLSPDGR NKSDTLPLATRYNVKCVGLSPDGRLAIIVD TRYNVKCVGLSPDGRLAIIVDEGGDALLVS K C V G R L 0 1 0 1 1 0 0 2 0 0 1 0 0 0 1 1 0 0 0 1 0 0 9 0 959.44946 Q15269;A0A0B4J2E5;C9J544 Q15269 60 68 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.0083617 65.246 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1501 1756 1545 4052 6377 6377 1 CVLPEEDSGELAK RLWQTVVGKTYGLWKCVLPEEDSGELAKPK WKCVLPEEDSGELAKPKIGFPETTEEELEE K C V A K P 1 0 0 1 1 0 3 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 13 0 1445.6708 Q9Y3F4;B0AZV0 Q9Y3F4 305 317 STRAP Serine-threonine kinase receptor-associated protein yes no 2 0.040086 42.718 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1502 2136 1546 4053 6378 6378 1 CYIVATVDR TYADDCLVQRVTQHKCYIVATVDRDLKRRI RVTQHKCYIVATVDRDLKRRIRKIPGVPIM K C Y D R D 1 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 9 0 1095.5383 G3V5S9;G3V1S4;Q4FZ45;Q9Y324;Q66K47 G3V5S9 139 147 FCF1;DKFZp686O2396 rRNA-processing protein FCF1 homolog yes no 2 0.0031099 75.854 2 2 1.0115 0.89146 9.3568 2 Median NaN NaN NaN 0 0 Median 1.0115 0.89146 9.3568 2 0 Median 3865000 2061900 1803100 0 0 0 3865000 2061900 1803100 1503 1272 1547 4054;4055;4056;4057 6379;6380;6381;6382;6383;6384;6385 6379 7 CYVQPQWVFDSVNAR QIVDRPGQQTSVIGRCYVQPQWVFDSVNAR CYVQPQWVFDSVNARLLLPVAEYFSGVQLP R C Y A R L 1 1 1 1 1 2 0 0 0 0 0 0 0 1 1 1 0 1 1 3 0 0 15 0 1867.8676 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;Q6ZUE0 B5MCF9 374 388 PES1 Pescadillo homolog yes no 2 0.0018483 46.592 2 1.0281 0.87274 2.1804 2 Median NaN NaN NaN 0 0 Median 1.0281 0.87274 2.1804 2 0 Median 5932200 2999700 2932400 0 0 0 5932200 2999700 2932400 1504 886 1548 4058;4059 6386;6387 6386 2 DAAFQNVLTHVCLD QQDLHRAIEKMKKSKDAAFQNVLTHVCLD_ KDAAFQNVLTHVCLD_______________ K D A L D - 2 0 1 2 1 1 0 0 1 0 2 0 0 1 0 0 1 0 0 2 0 0 14 0 1601.7508 Q8NBU5;B4E2J1 Q8NBU5 348 361 ATAD1 ATPase family AAA domain-containing protein 1 yes no 2 0.00046561 79.201 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9495600 0 0 6744600 0 0 2751100 0 0 1505 1920 1549 4060;4061;4062 6388;6389;6390 6388 3 DAAGIAMEAIAFAR GGRTMVQLFEKGYGKDAAGIAMEAIAFARN KDAAGIAMEAIAFARNQGFDVVLVDTAGRM K D A A R N 6 1 0 1 0 0 1 1 0 2 0 0 1 1 0 0 0 0 0 0 0 0 14 0 1405.7024 Q6IAX9;P08240;A0A024R3M0 Q6IAX9 497 510 SRPR Signal recognition particle receptor subunit alpha yes no 2 0.0024295 53.569 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5661500 0 5661500 5661500 0 5661500 0 0 0 1506 1455 1550 4063;4064 6391;6392;6393 6393 1165 3 DAALATALGDK AQIKLREYEAALNSKDAALATALGDKKSLE LNSKDAALATALGDKKSLEGDLEDLKDQIA K D A D K K 4 0 0 2 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1044.5451 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 146 156 LMNB1 Lamin-B1 yes no 2 0.0084432 50.791 1 1.1384 1.2272 NaN 1 Median 1.1384 1.2272 NaN 1 0 Median NaN NaN NaN 0 0 Median 34020000 14492000 19528000 34020000 14492000 19528000 0 0 0 1507 1502 1551 4065 6394 6394 1 DAALATALGDKK AQIKLREYEAALNSKDAALATALGDKKSLE NSKDAALATALGDKKSLEGDLEDLKDQIAQ K D A K K S 4 0 0 2 0 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 12 1 1172.6401 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 146 157 LMNB1 Lamin-B1 yes no 2 0.00017629 95.483 2 2 1.4765 1.4723 4.5484 4 Median 1.2015 1.4071 3.5012 2 0 Median 1.7663 1.5096 0.64226 2 0 Median 187870000 82206000 105660000 176210000 78112000 98096000 11661000 4093500 7568000 1508 1502 1552 4066;4067;4068;4069 6395;6396;6397;6398;6399;6400 6395 6 DAANLLNDALAIR LNILALVYRDQNKYKDAANLLNDALAIREK YKDAANLLNDALAIREKTLGKDHPAVAATL K D A I R E 4 1 2 2 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 13 0 1368.7361 Q7Z5D5;Q7RTQ9;Q7RTQ7;G5E9S8;G3V2E7;B5BU63;F8W6L3;B4DGB3;Q7RTQ8;Q7RTQ2;G3V3H3;Q7RTQ1;Q7RTQ0;Q7RTQ4;G3V5R9;Q7RTP8;E7EVH7;B4DS14;Q07866 Q7Z5D5 273 285 KNS2;KLC1 Kinesin light chain 1 yes no 2 1.5131E-05 94.616 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4684700 0 4684700 4684700 0 4684700 0 0 0 1509 972 1553 4070 6401;6402 6401 2 DAASAGLGSIGVK AVLIREGVSSTTPAKDAASAGLGSIGVKFS AKDAASAGLGSIGVKFSRDRESRSPFLKPD K D A V K F 3 0 0 1 0 0 0 3 0 1 1 1 0 0 0 2 0 0 0 1 0 0 13 0 1144.6088 A0A024QZH6;Q9H7N4 A0A024QZH6 853 865 SR-A1;SCAF1 Splicing factor, arginine/serine-rich 19 yes no 2 0.004753 60.255 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12570000 12570000 0 12570000 12570000 0 0 0 0 1510 22 1554 4071 6403 6403 1 DADDAVYELDGK DLKRGFGFVEFEDPRDADDAVYELDGKELC DPRDADDAVYELDGKELCSERVTIEHARAR R D A G K E 2 0 0 4 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1309.5674 A0A024R6D8;Q59EK7;Q13243;B4DJK0;B4DUA4;G3V5K8;B5BUD8 A0A024R6D8 49 60 SFRS5;SRSF5 Serine/arginine-rich splicing factor 5 yes no 2 3.9237E-23 160.53 5 1 1.0913 1.4231 29.457 5 Linear 1.1333 1.3698 10.437 4 0 Linear 0.84121 0.65698 NaN 1 0 Median 138310000 63365000 74943000 135050000 61530000 73517000 3261700 1835200 1426500 1511 202 1555 4072;4073;4074;4075;4076;4077 6404;6405;6406;6407;6408;6409;6410;6411;6412;6413;6414 6405 11 DADDAVYELNGK DLKNGYGFVEFEDSRDADDAVYELNGKELC DSRDADDAVYELNGKELCGEHVIVEHARGP R D A G K E 2 0 1 3 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1308.5834 A8K644;Q08170;A0A0D9SEM4;Q53F45;B4DEM8;V9HVZ0;A8K588;Q13247;Q59GY3;B5BU15 V9HVZ0 47 58 SFRS4;SRSF4;HEL-S-91;SRSF6;SFRS6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6 no no 2 3.5439E-28 145.34 2 1 0.78611 0.66573 NaN 1 Median NaN NaN NaN 0 0 Median 0.78611 0.66573 NaN 1 0 Median 47799000 780340 47019000 46338000 0 46338000 1461600 780340 681230 1512 748;755 1556 4078;4079;4080 6415;6416;6417 6415 3 DADPILISLR GPEAALEAEEWVSGRDADPILISLREAYVP WVSGRDADPILISLREAYVPSKQRDLKISR R D A L R E 1 1 0 2 0 0 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1111.6237 Q9NSK3;A0A024R5K1;Q9BR76 Q9NSK3 178 187 DKFZp762I166;CORO1B Coronin;Coronin-1B yes no 2 0.0014097 84.213 2 2 2.4686 2.3869 33.167 4 Median 1.7447 1.793 5.3768 2 0 Median 3.6099 3.1696 5.0187 2 0 Median 26639000 8204800 18434000 22660000 7287700 15372000 3979200 917120 3062100 1513 184 1557 4081;4082;4083;4084 6418;6419;6420;6421;6422;6423;6424 6419 7 DADSITLFDVQQK CDEIFYAGTGNLLLRDADSITLFDVQQKRT LRDADSITLFDVQQKRTLASVKISKVKYVI R D A Q K R 1 0 0 3 0 2 0 0 0 1 1 1 0 1 0 1 1 0 0 1 0 0 13 0 1478.7253 P53621 P53621 468 480 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0033389 63.624 1 1.7911 1.4209 NaN 1 Median NaN NaN NaN 0 0 Median 1.7911 1.4209 NaN 1 0 Median 10216000 3519900 6696500 0 0 0 10216000 3519900 6696500 1514 1607 1558 4085 6425 6425 1 DADSSISVLEIHSQK MKTGELEKETAPLRKDADSSISVLEIHSQK DADSSISVLEIHSQKAQIEEPDPPEMETSL K D A Q K A 1 0 0 2 0 1 1 0 1 2 1 1 0 0 0 4 0 0 0 1 0 0 15 0 1627.8053 Q96T23;H0YER1;H0YCN2 Q96T23 512 526 RSF1 Remodeling and spacing factor 1 yes no 2 4.7844E-10 112.84 2 0.43543 0.44277 10.121 2 Median 0.43543 0.44277 10.121 2 0 Median NaN NaN NaN 0 0 Median 47562000 32284000 15278000 47562000 32284000 15278000 0 0 0 1515 1991 1559 4086;4087 6426;6427;6428;6429 6426 4 DAEAWFNEK NMRSQYEQLAEQNRKDAEAWFNEKSKELTT AEQNRKDAEAWFNEKSKELTTEIDNNIEQI K D A E K S 2 0 1 1 0 0 2 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 9 0 1108.4825 CON__P13645;P13645;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 CON__P13645 335 343 KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 yes no 2 6.7183E-17 150.05 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 330940000 330940000 0 272970000 272970000 0 57969000 57969000 0 + 1516 1161 1560 4088;4089;4090;4091 6430;6431;6432;6433;6434;6435;6436 6431 7 DAEDALHNLDR RRPRGFAYVQFEDVRDAEDALHNLDRKWIC EDVRDAEDALHNLDRKWICGRQIEIQFAQG R D A D R K 2 1 1 3 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1267.5793 Q5JRI1;Q53GD7;A0A0S2Z504;O75494 Q5JRI1 63 73 SRSF10 Serine/arginine-rich splicing factor 10 yes no 2 3.0027E-23 172.21 2 2 0.9776 0.94201 33.277 4 Median 1.1206 1.2658 5.2931 2 0 Median 0.83016 0.71352 2.8014 2 0 Median 157580000 71802000 85783000 150390000 68269000 82118000 7196900 3532400 3664500 1517 574 1561 4092;4093;4094;4095 6437;6438;6439;6440;6441;6442;6443 6440 7 DAEDALHNLDRK RRPRGFAYVQFEDVRDAEDALHNLDRKWIC DVRDAEDALHNLDRKWICGRQIEIQFAQGD R D A R K W 2 1 1 3 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1395.6743 Q5JRI1;Q53GD7;A0A0S2Z504;O75494 Q5JRI1 63 74 SRSF10 Serine/arginine-rich splicing factor 10 yes no 3 0.02884 23.049 1 1.4244 1.6121 NaN 1 Median 1.4244 1.6121 NaN 1 0 Median NaN NaN NaN 0 0 Median 16111000 6122700 9988700 16111000 6122700 9988700 0 0 0 1518 574 1562 4096 6444 6444 1 DAEDAMDAMDGAVLDGR KESRGFAFVRFHDKRDAEDAMDAMDGAVLD EDAMDAMDGAVLDGRELRVQMARYGRPPDS R D A G R E 4 1 0 5 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 17 0 1750.7138 J3QL05;J3KP15;Q8NAK9;Q53FN0;A0A024R8U5;Q01130;B3KUY1 J3QL05 67 83 SRSF2;SFRS2 Serine/arginine-rich splicing factor 2 yes no 2 3.765E-27 135.58 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40516000 3500200 37016000 40516000 3500200 37016000 0 0 0 1519 258 1563 4097;4098;4099;4100;4101 6445;6446;6447;6448;6449;6450;6451;6452 6450 191;192 8 DAEDAVYGR RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP R D A G R D 2 1 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 9 0 994.43559 J3KTL2;Q07955;Q59FA2 J3KTL2 66 74 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00063538 96.492 1 1.2848 1.4158 NaN 1 Median 1.2848 1.4158 NaN 1 0 Median NaN NaN NaN 0 0 Median 55064000 23585000 31479000 55064000 23585000 31479000 0 0 0 1520 1333 1564 4102 6453 6453 1 DAEDWFFSK EMRDQYEKMAEKNRKDAEDWFFSKTEELNR AEKNRKDAEDWFFSKTEELNREVATNSELV K D A S K T 1 0 0 2 0 0 1 0 0 0 0 1 0 2 0 1 0 1 0 0 0 0 9 0 1143.4873 CON__Q04695;Q04695;F5GWP8;Q14666;K7ESE1 CON__Q04695 270 278 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.0055262 67.993 1 2 0.58649 0.49304 8.3704 2 Median NaN NaN NaN 0 0 Median 0.58649 0.49304 8.3704 2 0 Median 2990400 1799400 1191000 0 0 0 2990400 1799400 1191000 + 1521 1168 1565 4103;4104;4105 6454;6455;6456 6454 3 DAEEDDDTGGINLHK ELVQQWPQMQKSAIKDAEEDDDTGGINLHK DAEEDDDTGGINLHKAKERLQEEDKFDKEE K D A H K A 1 0 1 4 0 0 2 2 1 1 1 1 0 0 0 0 1 0 0 0 0 0 15 0 1627.6962 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 710 724 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 4.4834E-10 113.63 3 1 0.91952 0.90489 6.8336 3 Plateau 0.90523 0.89725 1.1984 2 0 Median 0.98536 0.79782 NaN 1 0 Median 37011000 18735000 18275000 34047000 17152000 16895000 2963700 1583000 1380700 1522 1708 1566 4106;4107;4108;4109 6457;6458;6459;6460;6461 6459 5 DAEEWFFTK EMRDQYEKMAEKNRKDAEEWFFTKTEELNR AEKNRKDAEEWFFTKTEELNREVATNSELV K D A T K T 1 0 0 1 0 0 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 9 0 1171.5186 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2 CON__P02533 301 309 KRT14 Keratin, type I cytoskeletal 14 yes no 2 0.0025812 80.219 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47636000 47636000 0 44469000 44469000 0 3167100 3167100 0 + 1523 1150 1567 4110;4111;4112 6462;6463;6464 6463 3 DAEGSTCLHLAAK AVKYLIKAGALVDPKDAEGSTCLHLAAKKG PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ K D A A K K 3 0 0 1 1 0 1 1 1 0 2 1 0 0 0 1 1 0 0 0 0 0 13 0 1371.6453 A0A1B0GV09;Q9H9B1;A0A0C4DGF8;A0A1B0GU48;A0A1B0GWF6;A0A0D9SFD7;A0A0D9SEY2;A0A0D9SFM6;A0A1B0GTP4 A0A1B0GV09 805 817 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 0.041457 41.164 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 713030 713030 0 0 0 0 713030 713030 0 1524 631 1568 4113 6465 6465 1 DAEQEGEGGGIITR EDTEKPSVNERPSEKDAEQEGEGGGIITRQ KDAEQEGEGGGIITRQTLKNMLDKEVKELR K D A T R Q 1 1 0 1 0 1 3 4 0 2 0 0 0 0 0 0 1 0 0 0 0 0 14 0 1430.6638 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 868 881 C10orf12 yes no 2 4.8299E-05 93.345 1 2 2.7976 2.369 33.575 3 Median 1.5579 1.5875 NaN 1 0 Median 3.2179 2.707 18.861 2 0 Median 21275000 5932800 15342000 14807000 4341300 10466000 6468000 1591500 4876500 1525 630 1569 4114;4115;4116 6466;6467;6468 6466 3 DAETWFLSK EMRDQYEQMAEKNRRDAETWFLSKTEELNK AEKNRRDAETWFLSKTEELNKEVASNSELV R D A S K T 1 0 0 1 0 0 1 0 0 0 1 1 0 1 0 1 1 1 0 0 0 0 9 0 1095.5237 CON__P08779;P08779;Q16195;K7ENW6 CON__P08779 303 311 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 2 0.049504 47.187 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11040000 11040000 0 11040000 11040000 0 0 0 0 + 1526 1159 1570 4117 6469 6469 1 DAFLGSFLYEYSR FAEDKDVCKNYQEAKDAFLGSFLYEYSRRH AKDAFLGSFLYEYSRRHPEYAVSVLLRLAK K D A S R R 1 1 0 1 0 0 1 1 0 0 2 0 0 2 0 2 0 0 2 0 0 0 13 0 1566.7355 CON__P02769 CON__P02769 347 359 yes yes 2 0.0043355 61.815 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11810000 11810000 0 11810000 11810000 0 0 0 0 + 1527 1153 1571 4118;4119 6470;6471 6470 2 DAFPVAGQK TVKALKEKIESEKGKDAFPVAGQKLIYAGK ESEKGKDAFPVAGQKLIYAGKILNDDTALK K D A Q K L 2 0 0 1 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 9 0 931.47633 P54727;B4DEA3;Q53F10;B7Z4W4;Q5W0S5;B7ZA74;Q5W0S4;K7ENJ0;K7ELW1;A8K1J3;A0A024R7G8;P54725 P54727 37 45 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A yes no 2 0.056712 36.395 1 0.90107 0.71077 NaN 1 Median NaN NaN NaN 0 0 Median 0.90107 0.71077 NaN 1 0 Median 5930500 2985600 2944900 0 0 0 5930500 2985600 2944900 1528 1610 1572 4120 6472 6472 1 DAGEGGLSLAIEGPSK HGVVNKPATFTVNTKDAGEGGLSLAIEGPS AGEGGLSLAIEGPSKAEISCTDNQDGTCSV K D A S K A 2 0 0 1 0 0 2 4 0 1 2 1 0 0 1 2 0 0 0 0 0 0 16 0 1499.7468 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4DTD5 P21333 1892 1907 FLNA;FLJ00119 Filamin-A yes no 2 1.4466E-17 131.13 1 1.1777 1.2685 NaN 1 Median 1.1777 1.2685 NaN 1 0 Median NaN NaN NaN 0 0 Median 33599000 15164000 18435000 33599000 15164000 18435000 0 0 0 1529 1504 1573 4121 6473 6473 1 DAGEGLLAVQITDPEGK GVPASLPVEFTIDAKDAGEGLLAVQITDPE GEGLLAVQITDPEGKPKKTHIQDNHDGTYT K D A G K P 2 0 0 2 0 1 2 3 0 1 2 1 0 0 1 0 1 0 0 1 0 0 17 0 1711.8628 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1574 1590 FLNA;FLJ00119 Filamin-A yes no 2 0.00014443 73.927 1 1.1608 1.2163 NaN 1 Median 1.1608 1.2163 NaN 1 0 Median NaN NaN NaN 0 0 Median 10739000 4283500 6455900 10739000 4283500 6455900 0 0 0 1530 1504 1574 4122 6474 6474 1 DAGEGLLAVQITDPEGKPK GVPASLPVEFTIDAKDAGEGLLAVQITDPE GLLAVQITDPEGKPKKTHIQDNHDGTYTVA K D A P K K 2 0 0 2 0 1 2 3 0 1 2 2 0 0 2 0 1 0 0 1 0 0 19 1 1937.0106 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1574 1592 FLNA;FLJ00119 Filamin-A yes no 2 4.509E-12 101.53 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11341000 0 11341000 11341000 0 11341000 0 0 0 1531 1504 1575 4123;4124 6475;6476 6476 2 DAGEGLLAVQITDQEGKPK GVPASLPVDFAIDARDAGEGLLAVQITDQE GLLAVQITDQEGKPKRAIVHDNKDGTYAVT R D A P K R 2 0 0 2 0 2 2 3 0 1 2 2 0 0 1 0 1 0 0 1 0 0 19 1 1968.0164 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1546 1564 FLNB;DKFZp686A1668 Filamin-B yes no 2 4.509E-12 101.53 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3853000 0 3853000 3853000 0 3853000 0 0 0 1532 1402 1576 4125;4126 6477;6478;6479 6479 3 DAGQISGLNVLR TVPAYFNDSQRQATKDAGQISGLNVLRVIN ATKDAGQISGLNVLRVINEPTAAALAYGLD K D A L R V 1 1 1 1 0 1 0 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 12 0 1241.6728 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3 B7Z4V2 193 204 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.042463 33.875 1 1.4311 1.2319 NaN 1 Median NaN NaN NaN 0 0 Median 1.4311 1.2319 NaN 1 0 Median 7289400 3132800 4156600 0 0 0 7289400 3132800 4156600 1533 1092 1577 4127 6480 6480 1 DAGTIAGLNVMR TVPAYFNDAQRQATKDAGTIAGLNVMRIIN ATKDAGTIAGLNVMRIINEPTAAAIAYGLD K D A M R I 2 1 1 1 0 0 0 2 0 1 1 0 1 0 0 0 1 0 0 1 0 0 12 0 1216.6234 V9HWB4;P11021;B4DEF7 V9HWB4 186 197 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.00036106 66.435 2 0.45888 0.45372 12.7 2 Median 0.45888 0.45372 12.7 2 0 Median NaN NaN NaN 0 0 Median 22586000 14402000 8184100 22586000 14402000 8184100 0 0 0 1534 1466 1578 4128;4129 6481;6482 6481 1178 1 DAGVIAGLNVLR TVPAYFNDSQRQATKDAGVIAGLNVLRIIN ATKDAGVIAGLNVLRIINEPTAAAIAYGLD K D A L R I 2 1 1 1 0 0 0 2 0 1 2 0 0 0 0 0 0 0 0 2 0 0 12 0 1196.6877 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;Q9UQC1 A8K5I0 160 171 HEL-S-103;HSPA1B;HSPA1A;HSP70-1 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2 1.0904E-17 138.98 2 2 0.90633 0.90751 2.6122 4 Median 0.78447 0.90751 0.42935 2 0 Median 1.0574 0.90878 4.5019 2 0 Median 427330000 242170000 185160000 369500000 213340000 156160000 57833000 28830000 29003000 1535 533 1579 4130;4131;4132;4133 6483;6484;6485;6486;6487;6488;6489 6484 7 DAGYGGISLAVEGPSK EGRTFEMSDFIVDTRDAGYGGISLAVEGPS AGYGGISLAVEGPSKVDIQTEDLEDGTCKV R D A S K V 2 0 0 1 0 0 1 4 0 1 1 1 0 0 1 2 0 0 1 1 0 0 16 0 1519.7518 O75369;A0A024R321;Q68CT4;E7EN95 O75369 2029 2044 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0065237 50.088 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1536 1402 1580 4134 6490 6490 1 DAGYGGLSLSIEGPSK EGHTFEPAEFIIDTRDAGYGGLSLSIEGPS AGYGGLSLSIEGPSKVDINTEDLEDGTCRV R D A S K V 1 0 0 1 0 0 1 4 0 1 2 1 0 0 1 3 0 0 1 0 0 0 16 0 1549.7624 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5C6 P21333 2074 2089 FLNA;FLJ00119 Filamin-A yes no 2 0.00090886 64.224 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1537 1504 1581 4135 6491 6491 1 DAHLLVESK IRNLLESYHVPELIKDAHLLVESKNLDFQK VPELIKDAHLLVESKNLDFQKTVQLTSSEL K D A S K N 1 0 0 1 0 0 1 0 1 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1010.5397 E5KNY5;P42704;B4DSR0 E5KNY5 641 649 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 1.5218E-05 122.33 2 1 2.2417 2.5188 44.074 3 Plateau 2.2558 2.4862 1.8385 2 0 Median 1.4543 1.1592 NaN 1 0 Median 111550000 33664000 77891000 109570000 32877000 76695000 1982500 787050 1195400 1538 1207 1582 4136;4137;4138 6492;6493;6494;6495;6496 6495 5 DAHQSLLATR VRNHPGLLLMDTTFRDAHQSLLATRVRTHD DTTFRDAHQSLLATRVRTHDLKKIAPYVAH R D A T R V 2 1 0 1 0 1 0 0 1 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1110.5782 A0A024R5C5;P11498 A0A024R5C5 572 581 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 7.3396E-06 100.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1539 176 1583 4139 6497 6497 1 DAIPENLPPLTADFAEDK KPLLEKSHCIAEVEKDAIPENLPPLTADFA PENLPPLTADFAEDKDVCKNYQEAKDAFLG K D A D K D 3 0 1 3 0 0 2 0 0 1 2 1 0 1 3 0 1 0 0 0 0 0 18 0 1954.9524 CON__P02769 CON__P02769 319 336 yes yes 2 0.0042285 47.774 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15669000 15669000 0 0 0 0 15669000 15669000 0 + 1540 1153 1584 4140 6498 6498 1 DAITQALFLR DVINESGLYRLKGHKDAITQALFLREKNLL LKGHKDAITQALFLREKNLLVTSGKDTMVK K D A L R E 2 1 0 1 0 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1146.6397 Q5TDG3;Q9UNX4 Q5TDG3 150 159 WDR3 WD repeat-containing protein 3 yes no 2 2.7092E-09 126.41 2 2 1.0946 1.0316 2.1109 4 Median 0.93336 1.0115 1.2178 2 0 Median 1.2692 1.0466 0.4905 2 0 Median 116530000 56834000 59696000 86328000 43526000 42802000 30202000 13308000 16894000 1541 1827 1585 4141;4142;4143;4144 6499;6500;6501;6502;6503;6504;6505;6506 6500 8 DALDGPAAEAEPEHSFDGLR TASQVAATKTLPNGRDALDGPAAEAEPEHS PAAEAEPEHSFDGLRRKVSAQRLQEAGILS R D A L R R 4 1 0 3 0 0 3 2 1 0 2 0 0 1 2 1 0 0 0 0 0 0 20 0 2095.9447 Q15149;D3DWL0 Q15149 2768 2787 PLEC;PLEC1 Plectin yes no 3 0.0051892 34.174 1 2.3414 2.0025 NaN 1 Median NaN NaN NaN 0 0 Median 2.3414 2.0025 NaN 1 0 Median 2759200 828120 1931000 0 0 0 2759200 828120 1931000 1542 1754 1586 4145 6507 6507 0 DALNIETAIK AYGSVKAYTNFDAERDALNIETAIKTKGVD FDAERDALNIETAIKTKGVDEVTIVNILTN R D A I K T 2 0 1 1 0 0 1 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1086.5921 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YKS4;B4DNH8;H0YMM1;A6NMY6;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 V9HW65 38 47 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2 0.0017287 72.325 2 1.1027 1.1423 23.309 2 Median 1.1027 1.1423 23.309 2 0 Median NaN NaN NaN 0 0 Median 32897000 14137000 18760000 32897000 14137000 18760000 0 0 0 1543 193 1587 4146;4147 6508;6509;6510 6509 2 DALNQATSQVESK NTQLARLQQENSILRDALNQATSQVESKQN LRDALNQATSQVESKQNAELAKLRQELSKV R D A S K Q 2 0 1 1 0 2 1 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 13 0 1389.6736 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 807 819 RRBP1 Ribosome-binding protein 1 yes no 2 1.4385E-05 95.162 1 1 0.83124 0.67128 NaN 1 Median NaN NaN NaN 0 0 Median 0.83124 0.67128 NaN 1 0 Median 8457500 1335000 7122500 5904400 0 5904400 2553100 1335000 1218100 1544 471 1588 4148;4149 6511;6512;6513 6511 3 DALTLSLSEQVAAALK PGAPPTAAAGSMMKKDALTLSLSEQVAAAL ALTLSLSEQVAAALKPAAAPPPTPLRADGA K D A L K P 4 0 0 1 0 1 1 0 0 0 4 1 0 0 0 2 1 0 0 1 0 0 16 0 1628.8985 P17535 P17535 48 63 JUND Transcription factor jun-D yes yes 2 1.1672E-35 151.98 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6013400 6013400 0 6013400 6013400 0 0 0 0 1545 1492 1589 4150;4151 6514;6515 6514 2 DANLTALAAIGPR AKEMQQQELAQMRQRDANLTALAAIGPRKK QRDANLTALAAIGPRKKRKVDCPGPGSGAE R D A P R K 4 1 1 1 0 0 0 1 0 1 2 0 0 0 1 0 1 0 0 0 0 0 13 0 1281.7041 A0A0G2JRY5;O00268;V9GY03;B4DYT3;J3KTH2;A4PBF7;Q92750 A0A0G2JRY5 375 387 TAF4;TAF4B;taf4b Transcription initiation factor TFIID subunit 4;Transcription initiation factor TFIID subunit 4B yes no 2 0.039559 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4119300 4119300 0 4119300 4119300 0 0 0 0 1546 535 1590 4152 6516 6516 1 DANLYISGLPR TIKVSYARPSSEVIKDANLYISGLPRTMTQ EVIKDANLYISGLPRTMTQKDVEDMFSRFG K D A P R T 1 1 1 1 0 0 0 1 0 1 2 0 0 0 1 1 0 0 1 0 0 0 11 0 1217.6404 Q15717;M0QZR9;M0R055 Q15717 105 115 ELAVL1 ELAV-like protein 1 yes no 2 0.00060333 73.887 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1547 1764 1591 4153 6517 6517 1 DANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPSR ADQMFFHSDYRPLIRDANNFVLDEQTQQAP PPFLVDVDGNPHPSRYQRLVPGRENCREEQ R D A S R Y 2 1 3 4 0 3 1 1 2 0 3 0 1 2 6 1 1 0 0 3 0 0 34 0 3794.8111 Q8WWQ0 Q8WWQ0 568 601 PHIP PH-interacting protein yes yes 4 3.2483E-31 90.944 2 0.99012 1.0994 8.7011 2 Median 0.99012 1.0994 8.7011 2 0 Median NaN NaN NaN 0 0 Median 116220000 66509000 49709000 116220000 66509000 49709000 0 0 0 1548 1942 1592 4154;4155 6518;6519;6520;6521 6520 1776 4 DANSSFFDNSSSPHLLDQLK QEVTPSRSTLQIGKRDANSSFFDNSSSPHL FFDNSSSPHLLDQLKAQNQELRNKINELEL R D A L K A 1 0 2 3 0 1 0 0 1 0 3 1 0 2 1 5 0 0 0 0 0 0 20 0 2221.0287 P49454 P49454 265 284 CENPF Centromere protein F yes yes 3 1.9852E-06 53.585 2 1.4749 1.5168 10.025 2 Median 1.4749 1.5168 10.025 2 0 Median NaN NaN NaN 0 0 Median 21619000 11291000 10328000 21619000 11291000 10328000 0 0 0 1549 1581 1593 4156;4157 6522;6523;6524;6525;6526 6526 5 DAPAESVAYHAQNNPPVPPKPQPK SHTNIHLLVTTYNLRDAPAESVAYHAQNNP HAQNNPPVPPKPQPKVQEKADIPVKSSPQA R D A P K V 4 0 2 1 0 2 1 0 1 0 0 2 0 0 7 1 0 0 1 2 0 0 24 1 2551.2819 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 573 596 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 1.0073E-11 62.611 3 2 0.99728 1.0073 42.935 4 Median 0.57801 0.67322 14.405 2 0 Median 1.6202 1.3952 3.4892 2 0 Median 73404000 44182000 29221000 65071000 40904000 24167000 8332900 3278400 5054500 1550 878 1594 4158;4159;4160;4161;4162 6527;6528;6529;6530;6531;6532;6533;6534;6535;6536;6537 6528 11 DAPPLLPSDTGQGYR GMHREVYALLYSDKKDAPPLLPSDTGQGYR DAPPLLPSDTGQGYRTVKAKLGSKKVRPWK K D A Y R T 1 1 0 2 0 1 0 2 0 0 2 0 0 0 3 1 1 0 1 0 0 0 15 0 1585.7736 B4DQG8;Q9NPF5;Q5TG40;B4DTH3;B4DEF2;B4DTU6;Q5TG38;Q5TG37 B4DQG8 67 81 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.020945 37.426 2 1 0.72739 0.73217 10.976 2 Median 0.72739 0.73217 10.976 2 0 Median NaN NaN NaN 0 0 Median 39639000 19201000 20438000 35799000 19201000 16599000 3839500 0 3839500 1551 1024 1595 4163;4164;4165 6538;6539;6540 6539 3 DAPQDFHPDR NSEDIRLSPFMADIRDAPQDFHPDRVKARG MADIRDAPQDFHPDRVKARGPGLEKTGVAV R D A D R V 1 1 0 3 0 1 0 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 10 0 1196.521 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 665 674 FLNA Filamin-A yes no 2 0.002984 66.595 2 1 1.7085 1.9241 29.09 3 Median 1.5452 1.7044 17.143 2 0 Median 3.2253 2.6946 NaN 1 0 Median 98496000 40056000 58440000 95153000 39379000 55774000 3342300 677010 2665300 1552 1504 1596 4166;4167;4168 6541;6542;6543;6544;6545 6542 5 DAPSLEEVEGHVADGSATEMGTTK AVHADVYRVLGGLGKDAPSLEEVEGHVADG GHVADGSATEMGTTKKAVKPKKKHLHRTIE K D A T K K 3 0 0 2 0 0 4 3 1 0 1 1 1 0 1 2 3 0 0 2 0 0 24 0 2430.0857 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 186 209 NCAPH Condensin complex subunit 2 yes no 3 1.4297E-45 138.93 1 4 1.9663 1.5309 24.248 5 Median 1.0616 1.2215 NaN 1 0 Median 1.9753 1.5641 26.401 4 0 Median 246020000 116600000 129420000 176220000 89442000 86776000 69805000 27157000 42648000 1553 740 1597;1598 4169;4170;4171;4172;4173 6546;6547;6548;6549;6550;6551;6552;6553 6547 574 8 DAQDAEAAMDGAELDGR KAPRGFAFVRFHDRRDAQDAEAAMDGAELD QDAEAAMDGAELDGRELRVQVARYGRRDLP R D A G R E 5 1 0 4 0 1 2 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 17 0 1733.7163 A0A024R3A8;Q9BRL6 A0A024R3A8 67 83 SRP46;SRSF8 Serine/arginine-rich splicing factor 8 yes no 2 0.00013999 72.891 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1554 133 1599 4174 6554 6554 113 1 DAQDVQASQAEADQQQTR RIRSIEALLEAGQARDAQDVQASQAEADQQ DVQASQAEADQQQTRLKELESQVSGLEKEA R D A T R L 4 1 0 3 0 6 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 18 0 1987.8831 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 971 988 RRBP1 Ribosome-binding protein 1 yes no 2 9.2649E-08 90.444 2 1 0.91684 0.91094 27.944 3 Median 0.94231 0.94691 5.4763 2 0 Median 0.6906 0.58632 NaN 1 0 Median 21244000 11557000 9687100 16053000 8559700 7492800 5191500 2997300 2194200 1555 471 1600 4175;4176;4177 6555;6556;6557;6558;6559 6556 5 DAQEFGADVR DMSTIKSKLEAREYRDAQEFGADVRLMFSN AREYRDAQEFGADVRLMFSNCYKYNPPDHE R D A V R L 2 1 0 2 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1106.4993 O60885;A0A024R7H8;Q6PIS5;Q6NXE4;Q05BM2;Q5BJ26;M0QZD9 O60885 414 423 BRD4 Bromodomain-containing protein 4 yes no 2 3.6338E-05 90.15 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1556 1399 1601 4178 6560 6560 1 DAQPSFSAEDIAK FRTVLIACNVKQMSKDAQPSFSAEDIAKIK SKDAQPSFSAEDIAKIKKFSKTRSKDIFDQ K D A A K I 3 0 0 2 0 1 1 0 0 1 0 1 0 1 1 2 0 0 0 0 0 0 13 0 1377.6412 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 271 283 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.0010013 72.652 2 1.2737 1.3917 6.8259 2 Median 1.2737 1.3917 6.8259 2 0 Median NaN NaN NaN 0 0 Median 79949000 36656000 43293000 79949000 36656000 43293000 0 0 0 1557 568 1602 4179;4180 6561;6562;6563;6564 6564 4 DAQQDLNLDIEK TERTPKHDVHQICDKDAQQDLNLDIEKITE CDKDAQQDLNLDIEKITETGAVKPTGECSG K D A E K I 1 0 1 3 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 12 0 1400.6783 P49454 P49454 1793 1804 CENPF Centromere protein F yes yes 2 0.016404 42.21 1 1.7954 1.4443 NaN 1 Median NaN NaN NaN 0 0 Median 1.7954 1.4443 NaN 1 0 Median 2501800 960460 1541300 0 0 0 2501800 960460 1541300 1558 1581 1603 4181 6565 6565 1 DAQTQLVGLHAK EQDLASMREFRGLLKDAQTQLVGLHAKQEE LLKDAQTQLVGLHAKQEELVQQTVSLTSTL K D A A K Q 2 0 0 1 0 2 0 1 1 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1279.6884 A8K8N3;Q96R06;A4FUA2 A8K8N3 615 626 SPAG5 Sperm-associated antigen 5 yes no 2 0.01773 52.705 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1559 779 1604 4182 6566 6566 1 DASGQPIFNASAK PPALKQPEDLVVLGKDASGQPIFNASAKHW GKDASGQPIFNASAKHWTNFVITENANDAI K D A A K H 3 0 1 1 0 1 0 1 0 1 0 1 0 1 1 2 0 0 0 0 0 0 13 0 1304.6361 Q6NUN2;A3F769;O15226;A3F768;A2I829;A2I832 Q6NUN2 323 335 NKRF;NRF NF-kappa-B-repressing factor yes no 2 1.8864E-13 129.89 1 1 0.74266 0.81365 NaN 1 Median 0.74266 0.81365 NaN 1 0 Median NaN NaN NaN 0 0 Median 54420000 30196000 24223000 52464000 28241000 24223000 1955900 1955900 0 1560 655 1605 4183;4184 6567;6568;6569 6567 3 DASLMVTNDGATILK LGPKGMDKILLSSGRDASLMVTNDGATILK DASLMVTNDGATILKNIGVDNPAAKVLVDM R D A L K N 2 0 1 2 0 0 0 1 0 1 2 1 1 0 0 1 2 0 0 1 0 0 15 0 1547.7865 F8VQ14;F5GWF6;V9HW96;P78371;B7Z4R3 F8VQ14 58 72 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 2 1.8932E-05 93.345 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1561 1255 1606 4185 6570 6570 959 1 DASLVTNEDHQR LHAEYESLRDLLKSKDASLVTNEDHQRSLL KSKDASLVTNEDHQRSLLAFDQQPAMHHSF K D A Q R S 1 1 1 2 0 1 1 0 1 0 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1383.6379 P49454 P49454 771 782 CENPF Centromere protein F yes yes 2 1.4585E-37 177.06 2 1.1019 1.161 11.254 2 Median 1.1019 1.161 11.254 2 0 Median NaN NaN NaN 0 0 Median 59032000 26915000 32117000 59032000 26915000 32117000 0 0 0 1562 1581 1607 4186;4187 6571;6572;6573;6574 6574 4 DASSSTFPTLTR EIAGVGVPELINSPKDASSSTFPTLTRHTF SPKDASSSTFPTLTRHTFVVFFRVMMAELE K D A T R H 1 1 0 1 0 0 0 0 0 0 1 0 0 1 1 3 3 0 0 0 0 0 12 0 1281.6201 A0A024R2G2;Q9BXW9;H7BZJ7 A0A024R2G2 1217 1228 FANCD2 Fanconi anemia group D2 protein yes no 2 0.005381 51.092 1 0.94366 0.9445 NaN 1 Median 0.94366 0.9445 NaN 1 0 Median NaN NaN NaN 0 0 Median 8971700 5532500 3439100 8971700 5532500 3439100 0 0 0 1563 111 1608 4188 6575 6575 1 DASSTYSQVENLNR KVSFLLPTLRKVNGKDASSTYSQVENLNRE KDASSTYSQVENLNRELTSRVTAHWEKFMA K D A N R E 1 1 2 1 0 1 1 0 0 0 1 0 0 0 0 3 1 0 1 1 0 0 14 0 1582.7223 A0A140VJD0;Q9UFC0;H7C5S6;Q59FT0 A0A140VJD0 126 139 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.0037659 46.592 2 1.2357 1.0577 13.531 2 Median NaN NaN NaN 0 0 Median 1.2357 1.0577 13.531 2 0 Median 9382500 4244200 5138300 0 0 0 9382500 4244200 5138300 1564 599 1609 4189;4190 6576;6577;6578 6578 3 DATNVAAAFEEAVR CRDNGDYPYFETSAKDATNVAAAFEEAVRR KDATNVAAAFEEAVRRVLATEDRSDHLIQT K D A V R R 5 1 1 1 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 14 0 1462.7052 A0A024RBV5;P51151 A0A024RBV5 157 170 RAB9A Ras-related protein Rab-9A yes no 2 1.7963E-09 118.77 2 1 2.5423 2.6134 52.342 3 Median 2.576 2.6235 0.54569 2 0 Median 1.2495 1.0596 NaN 1 0 Median 27615000 9645700 17969000 24608000 8278700 16329000 3007500 1367000 1640400 1565 348 1610 4191;4192;4193 6579;6580;6581;6582 6580 4 DATSRPTDNILIPQLIR MVLAGASEFDPQYNKDATSRPTDNILIPQL TSRPTDNILIPQLIREIGSINLKKNEPPLT K D A I R E 1 2 1 2 0 1 0 0 0 3 2 0 0 0 2 1 2 0 0 0 0 0 17 1 1922.0585 B3KNE7;B3KQF0;A0A0S2Z5M1;Q9UGP8 B3KNE7 123 139 SEC63 Translocation protein SEC63 homolog yes no 3 0.01921 32.091 2 0.5775 0.58022 NaN 1 Median 0.5775 0.58022 NaN 1 0 Median NaN NaN NaN 0 0 Median 15732000 11198000 4534000 15732000 11198000 4534000 0 0 0 1566 584 1611 4194;4195 6583;6584 6583 1 DAVITVPVFFNQAER YSRSLAEDFAEQPIKDAVITVPVFFNQAER DAVITVPVFFNQAERRAVLQAARMAGLKVL K D A E R R 2 1 1 1 0 1 1 0 0 1 0 0 0 2 1 0 1 0 0 3 0 0 15 0 1704.8835 B7Z766;A0A087X054;B7Z2N4;B3KXH0;Q9Y4L1;E9PJ21;Q05D91;A0A087WWI4;Q6IN67;K7EQK2;J3KTF1;A0A024R3G0;J3QL06 B7Z766 20 34 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.0017999 46.73 2 1.3128 1.3081 27.208 2 Median 1.3128 1.3081 27.208 2 0 Median NaN NaN NaN 0 0 Median 16735000 8410600 8324000 16735000 8410600 8324000 0 0 0 1567 443 1612 4196;4197 6585;6586 6586 2 DAVLLLFANK VADELQKMLLVDELRDAVLLLFANKQDLPN VDELRDAVLLLFANKQDLPNAMAISEMTDK R D A N K Q 2 0 1 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 10 0 1102.6386 P18085;C9JPM4;C9JAK5;U3KQF2 P18085 118 127 ARF4 ADP-ribosylation factor 4 yes no 2 9.5484E-06 105.57 2 2.5393 2.6686 8.472 2 Median 2.5393 2.6686 8.472 2 0 Median NaN NaN NaN 0 0 Median 40299000 13059000 27240000 40299000 13059000 27240000 0 0 0 1568 1498 1613 4198;4199 6587;6588;6589;6590 6587 4 DAVLLVFANK QESADELQKMEDELRDAVLLVFANKQDMPN EDELRDAVLLVFANKQDMPNAMPVSELTDK R D A N K Q 2 0 1 1 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 2 0 0 10 0 1088.623 C9J1Z8;A4D0Z3;B4DLJ3;P84085;B4DEB9;A0A024R3Q3;A0A024R0Y6;F5H423;P84077;P61204;B4E190 A0A024R3Q3 116 125 ARF5;ARF1;ARF3 ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3 no no 2 7.7112E-05 92.439 3 5.1396 5.2955 NaN 1 Median 5.1396 5.2955 NaN 1 0 Median NaN NaN NaN 0 0 Median 25934000 1732400 24202000 25934000 1732400 24202000 0 0 0 1569 660;62 1614 4200;4201;4202 6591;6592;6593;6594 6592 4 DAVSGLAFR EAQSCQHLYTFTGHRDAVSGLAFRRGTHQL TFTGHRDAVSGLAFRRGTHQLYSTSHDRSV R D A F R R 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 934.48723 O43818 O43818 242 250 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 1.5614E-05 121.99 2 1 0.8496 0.94837 10.758 3 Median 0.83567 0.94977 0.20878 2 0 Median 0.94658 0.78832 NaN 1 0 Median 342920000 188120000 154800000 327190000 180240000 146940000 15733000 7876500 7856300 1570 1389 1615 4203;4204;4205 6595;6596;6597;6598 6597 4 DAVSNTTNQLESK EAEIAHLKQENGILRDAVSNTTNQLESKQS LRDAVSNTTNQLESKQSAELNKLRQDYARL R D A S K Q 1 0 2 1 0 1 1 0 0 0 1 1 0 0 0 2 2 0 0 1 0 0 13 0 1405.6685 A0A024R663;Q86UP2 A0A024R663 431 443 KTN1 Kinectin yes no 2 5.9345E-06 105.2 2 0.48415 0.37676 9.9065 2 Median NaN NaN NaN 0 0 Median 0.48415 0.37676 9.9065 2 0 Median 6908700 4666000 2242700 0 0 0 6908700 4666000 2242700 1571 197 1616 4206;4207 6599;6600;6601;6602 6601 4 DAVTYTEHAK ETRGVLKVFLENVIRDAVTYTEHAKRKTVT ENVIRDAVTYTEHAKRKTVTAMDVVYALKR R D A A K R 2 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 10 0 1133.5353 B2R4R0;P62805;Q0VAS5 B2R4R0 69 78 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 9.601E-30 159.58 20 9 0.72446 0.69013 17.904 14 Median 0.6912 0.71841 19.278 9 0 Median 0.78344 0.63382 6.4018 5 0 Median 12547000000 10285000000 2262800000 10643000000 8429900000 2213400000 1904000000 1854700000 49365000 1572 828 1617 4208;4209;4210;4211;4212;4213;4214;4215;4216;4217;4218;4219;4220;4221;4222;4223;4224;4225;4226;4227;4228;4229;4230;4231;4232;4233;4234;4235;4236 6603;6604;6605;6606;6607;6608;6609;6610;6611;6612;6613;6614;6615;6616;6617;6618;6619;6620;6621;6622;6623;6624;6625;6626;6627;6628;6629;6630;6631;6632;6633;6634;6635;6636;6637;6638;6639;6640;6641;6642;6643;6644;6645;6646;6647;6648;6649;6650 6613 47 DAVTYTEHAKR ETRGVLKVFLENVIRDAVTYTEHAKRKTVT NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ R D A K R K 2 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 11 1 1289.6364 B2R4R0;P62805 B2R4R0 69 79 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 0.00035848 89.047 2 0.76957 0.86632 14.957 2 Median 0.76957 0.86632 14.957 2 0 Median NaN NaN NaN 0 0 Median 30583000 16583000 14000000 30583000 16583000 14000000 0 0 0 1573 828 1618 4237;4238 6651;6652 6651 1 DAVVGRPSMDK QASSHIGNSTQATVRDAVVGRPSMDKKAQ_ ATVRDAVVGRPSMDKKAQ____________ R D A D K K 1 1 0 2 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 2 0 0 11 1 1173.5812 F5H6I7;B4DXC4;Q6DD88 F5H6I7 510 520 ATL3 Atlastin-3 yes no 2 0.026964 54.608 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1574 1047 1619 4239 6653 6653 822 1 DAVVYPILVEFTR AALSKAFKVKPFVVRDAVVYPILVEFTREV VRDAVVYPILVEFTREVEEEPGIHSLKHNK R D A T R E 1 1 0 1 0 0 1 0 0 1 1 0 0 1 1 0 1 0 1 3 0 0 13 0 1520.8239 B7Z766;A0A087X054;B7Z2N4;B3KXH0;Q9Y4L1;E9PJ21;Q05D91;A0A087WWI4;Q6IN67;K7EQK2 B7Z766 288 300 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.0044591 61.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3556300 0 3556300 3556300 0 3556300 0 0 0 1575 443 1620 4240 6654;6655 6655 2 DCDLQEDACYNCGR PDICYRCGESGHLAKDCDLQEDACYNCGRG KDCDLQEDACYNCGRGGHIAKDCKEPKRER K D C G R G 1 1 1 3 3 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 14 0 1774.6345 A0A0S2Z4Q3;A0A0S2Z4K2;P62633 A0A0S2Z4Q3 59 72 CNBP Cellular nucleic acid-binding protein yes no 2 4.2647E-22 133.89 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6676500 0 6676500 6676500 0 6676500 0 0 0 1576 565 1621 4241;4242;4243 6656;6657;6658 6657 3 DCEVVMMIGLPGAGK LEDRVRGPKGPEEKKDCEVVMMIGLPGAGK DCEVVMMIGLPGAGKTTWVTKHAAENPGKY K D C G K T 1 0 0 1 1 0 1 3 0 1 1 1 2 0 1 0 0 0 0 2 0 0 15 0 1575.7459 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 455 469 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 5.9429E-08 101.93 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38289000 0 38289000 38289000 0 38289000 0 0 0 1577 999 1622 4244;4245 6659;6660 6660 787;788 2 DCFGCLR EWLKDTCGANAKQSRDCFGCLREWCDAFL_ GANAKQSRDCFGCLREWCDAFL________ R D C L R E 0 1 0 1 2 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 926.37386 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 76 82 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 0.026968 84.025 1 0.87163 1.0161 NaN 1 Median 0.87163 1.0161 NaN 1 0 Median NaN NaN NaN 0 0 Median 474790000 257740000 217050000 474790000 257740000 217050000 0 0 0 1578 181 1623 4246 6661 6661 1 DCLSIPYR RHNLEIIKTLVECWKDCLSIPYRLIFEKFS TLVECWKDCLSIPYRLIFEKFSGKDPNSKD K D C Y R L 0 1 0 1 1 0 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 8 0 1022.4855 P78527 P78527 2247 2254 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.011116 70.67 2 0.62027 0.62475 3.8248 2 Median 0.62027 0.62475 3.8248 2 0 Median NaN NaN NaN 0 0 Median 27923000 15120000 12803000 27923000 15120000 12803000 0 0 0 1579 1665 1624 4247;4248 6662;6663 6662 2 DCVAVAGPLGVTHFLILSK LTASRLQVRKKNSLKDCVAVAGPLGVTHFL VAGPLGVTHFLILSKTETNVYFKLMRLPGG K D C S K T 2 0 0 1 1 0 0 2 1 1 3 1 0 1 1 1 1 0 0 3 0 0 19 0 1996.0816 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 72 90 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2;3 6.3962E-08 101.62 4 4 0.69281 0.7353 50.384 8 Median 0.69281 0.7353 7.0707 4 0 Median 0.64211 0.53312 72.402 4 0 Median 318640000 175670000 142960000 131400000 79154000 52246000 187240000 96520000 90718000 1580 493 1625 4249;4250;4251;4252;4253;4254;4255;4256 6664;6665;6666;6667;6668;6669;6670;6671;6672;6673;6674;6675;6676 6673 13 DDAHYAVQAR LEKEMRSLGVDMDDKDDAHYAVQARRSRSI DMDDKDDAHYAVQARRSRSITRKRKREDSA K D D A R R 3 1 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 10 0 1144.5261 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 533 542 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 1.3473E-05 102.62 1 1.0516 1.1706 NaN 1 Median 1.0516 1.1706 NaN 1 0 Median NaN NaN NaN 0 0 Median 79125000 39334000 39791000 79125000 39334000 39791000 0 0 0 1581 1183 1626 4257 6677 6677 1 DDAQSVETLGK QKNTSNKNKLEDELKDDAQSVETLGKPKAK DELKDDAQSVETLGKPKAKRIRTSKTKQAS K D D G K P 1 0 0 2 0 1 1 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1161.5513 Q8WYP5;B3KRD0 Q8WYP5 2177 2187 AHCTF1 Protein ELYS yes no 2 3.647E-13 127.4 2 2 1.8483 1.5076 10.32 3 Median 1.1728 1.2767 NaN 1 0 Median 1.886 1.525 1.6171 2 0 Median 62414000 28375000 34039000 49088000 23425000 25664000 13326000 4950800 8375600 1582 1945 1627 4258;4259;4260;4261 6678;6679;6680;6681;6682;6683;6684 6679 7 DDAQSVETLGKPK QKNTSNKNKLEDELKDDAQSVETLGKPKAK LKDDAQSVETLGKPKAKRIRTSKTKQASKN K D D P K A 1 0 0 2 0 1 1 1 0 0 1 2 0 0 1 1 1 0 0 1 0 0 13 1 1386.6991 Q8WYP5;B3KRD0 Q8WYP5 2177 2189 AHCTF1 Protein ELYS yes no 2 1.6084E-06 106.29 1 2 2.0266 1.7214 3.7558 2 Median NaN NaN NaN 0 0 Median 2.0266 1.7214 3.7558 2 0 Median 28423000 9676000 18747000 0 0 0 28423000 9676000 18747000 1583 1945 1628 4262;4263;4264 6685;6686;6687;6688;6689 6685 5 DDDIAALVVDNGSGMCK ______________________________ DIAALVVDNGSGMCKAGFAGDDAPRAVFPS M D D C K A 2 0 1 4 1 0 0 2 0 1 1 1 1 0 0 1 0 0 0 2 0 0 17 0 1778.7815 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;B4DW52;G5E9R0;E7EVS6;C9JTX5;C9JZR7 Q53GK6 2 18 PS1TP5BP1;ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 2 1.1123E-07 98.531 1 3 2.0614 1.6327 15.583 3 Median 2.0967 2.0993 NaN 1 0 Median 2.0154 1.6053 2.394 2 0 Median 50865000 15789000 35075000 6752400 1757700 4994700 44112000 14032000 30081000 1584 1624 1629;1630 4265;4266;4267;4268 6690;6691;6692;6693;6694;6695;6696;6697;6698 6698 1409 9 DDEEADAIYAALDK NGYAGSLFSSGPYEKDDEEADAIYAALDKR KDDEEADAIYAALDKRMDERRKERREQREK K D D D K R 4 0 0 4 0 0 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 14 0 1537.6784 O94906 O94906 97 110 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 6.8264E-07 96.64 1 2 1.0068 0.91656 13.578 2 Median 0.83176 0.83265 NaN 1 0 Median 1.2186 1.0089 NaN 1 0 Median 16544000 9699300 6844300 13961000 8013700 5947300 2582500 1685600 896960 1585 1418 1631 4269;4270;4271 6699;6700;6701 6699 2 DDEENYLDLFSHK LTAEIEKIQKGDSKKDDEENYLDLFSHKNM KKDDEENYLDLFSHKNMKLKERVLIPVKQY K D D H K N 0 0 1 3 0 0 2 0 1 0 2 1 0 1 0 1 0 0 1 0 0 0 13 0 1623.7053 B4DDX2;Q07666;B4E043;B2R7B5 B4DDX2 120 132 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 2 0.00023067 69.01 3 1.4243 1.4686 NaN 1 Median 1.4243 1.4686 NaN 1 0 Median NaN NaN NaN 0 0 Median 14658000 8321700 6336700 14658000 8321700 6336700 0 0 0 1586 962 1632 4272;4273;4274 6702;6703;6704 6704 3 DDESDAPCSSLGLSSSGSGDAAR EEAVNEVDNENTQQKDDESDAPCSSLGLSS SSLGLSSSGSGDAARAPKSVPRPKRLTSST K D D A R A 3 1 0 4 1 0 1 3 0 0 2 0 0 0 1 7 0 0 0 0 0 0 23 0 2239.9135 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 975 997 C10orf12 yes no 2 7.246E-05 48.883 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1199700 0 1199700 0 0 0 1199700 0 1199700 1587 630 1633 4275 6705 6705 1 DDEVQVVR ELRQKYNVRSMPIRKDDEVQVVRGHYKGQQ RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY K D D V R G 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 8 0 958.47197 Q6IBH6;P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KTJ8;A0A024RBF6;E5RIT6;Q9UNX3 Q6IBH6 52 59 RPL26;hCG_26523;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 no no 2 0.00080118 127.31 2 2 0.69684 0.69703 43.742 4 Median 0.86486 1.0115 1.2984 2 0 Median 0.56648 0.47451 3.0194 2 0 Median 571790000 319110000 252680000 533070000 294650000 238420000 38720000 24458000 14262000 1588 1629;1214 1634 4276;4277;4278;4279 6706;6707;6708;6709;6710;6711;6712;6713 6707 8 DDFLGAAEGK FFKISPDLNIKCERKDDFLGAAEGKLQCNR KCERKDDFLGAAEGKLQCNRLMPNSQKDCH K D D G K L 2 0 0 2 0 0 1 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1021.4716 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 752 761 CDCA2 Cell division cycle-associated protein 2 yes no 2 0.023327 53.751 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6304600 6304600 0 6304600 6304600 0 0 0 0 1589 1233 1635 4280 6714 6714 1 DDGLFSGDPNWFPK VQRTLMNLGGLAVARDDGLFSGDPNWFPKK RDDGLFSGDPNWFPKKSKENPRNFSDNQLQ R D D P K K 0 0 1 3 0 0 0 2 0 0 1 1 0 2 2 1 0 1 0 0 0 0 14 0 1593.71 X6RJP6;P37802 X6RJP6 140 153 TAGLN2 Transgelin-2 yes no 2 0.0060049 54.784 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3076300 0 3076300 3076300 0 3076300 0 0 0 1590 1550 1636 4281 6715 6715 1 DDGNQPQDQITITGYEK QIRLEHDVNIQFPDKDDGNQPQDQITITGY GNQPQDQITITGYEKNTEAARDAILRIVGE K D D E K N 0 0 1 3 0 3 1 2 0 2 0 1 0 0 1 0 2 0 1 0 0 0 17 0 1920.8701 A0A024R4E5;Q00341;B2R5V9;Q96CF6;Q2HJC8 A0A024R4E5 1092 1108 HDLBP Vigilin yes no 2 6.4187E-09 94.688 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16188000 0 16188000 16188000 0 16188000 0 0 0 1591 154 1637 4282;4283;4284;4285 6716;6717;6718;6719;6720 6719 5 DDGSTLMEIDGDK PKVDFPTAIGMVVERDDGSTLMEIDGDKGK ERDDGSTLMEIDGDKGKQGGPTYYIDTNAL R D D D K G 0 0 0 4 0 0 1 2 0 1 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1394.5871 Q6FI97;Q53FS0;O96019;H7C5S0;C9JQT2 Q6FI97 48 60 BAF53A;ACTL6A Actin-like protein 6A yes no 2 3.3002E-06 102.52 4 0.84996 0.8325 15.527 3 Median 0.84996 0.8325 15.527 3 0 Median NaN NaN NaN 0 0 Median 71350000 38108000 33242000 71350000 38108000 33242000 0 0 0 1592 1434 1638 4286;4287;4288;4289 6721;6722;6723;6724;6725;6726;6727 6727 1127 6 DDGVFVQEVTQNSPAAR NWQGSGSHGLTIAQRDDGVFVQEVTQNSPA GVFVQEVTQNSPAARTGVVKEGDQIVGATI R D D A R T 2 1 1 2 0 2 1 1 0 0 0 0 0 1 1 1 1 0 0 3 0 0 17 0 1831.8701 Q09666;B4DTV0;E9PQE3;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q96EC4;Q9BVU3 Q09666 29 45 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 7.0301E-35 161.48 2 2 1.749 1.8789 43.808 3 Plateau 1.7753 1.8741 0.35929 2 0 Median 1.0445 0.87754 NaN 1 0 Median 54607000 19140000 35468000 48179000 16844000 31336000 6428000 2296000 4132000 1593 1696 1639 4290;4291;4292;4293 6728;6729;6730;6731;6732;6733;6734 6728 7 DDGVSIPGEYTSFLAPISSSK ELSPECLDGAQHFLKDDGVSIPGEYTSFLA PGEYTSFLAPISSSKLYNEVRACREKDRDP K D D S K L 1 0 0 2 0 0 1 2 0 2 1 1 0 1 2 5 1 0 1 1 0 0 21 0 2169.0477 B4DV00;B2RDD7;O14744;H0YJD3 B4DV00 353 373 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 8.723E-05 39.509 1 1.7112 1.7222 NaN 1 Median 1.7112 1.7222 NaN 1 0 Median NaN NaN NaN 0 0 Median 7133800 2335200 4798600 7133800 2335200 4798600 0 0 0 1594 885 1640 4294 6735 6735 1 DDIAQVDYVEPSQNTISLK LKPKSWVRLKRGIYKDDIAQVDYVEPSQNT QVDYVEPSQNTISLKMIPRIDYDRIKARMS K D D L K M 1 0 1 3 0 2 1 0 0 2 1 1 0 0 1 2 1 0 1 2 0 0 19 0 2134.043 B4E0Q4;B4DZJ7;O00267;B4DJK4 B4E0Q4 147 165 SUPT5H Transcription elongation factor SPT5 yes no 2 8.3908E-05 67.115 2 1 1.396 1.1665 NaN 1 Median NaN NaN NaN 0 0 Median 1.396 1.1665 NaN 1 0 Median 8805800 849440 7956400 6582500 0 6582500 2223400 849440 1373900 1595 1056 1641 4295;4296;4297 6736;6737;6738 6736 3 DDIDLDALAAEIEGAGAAK ______________________________ LDALAAEIEGAGAAKEQEPQKSKGKKKKEK K D D A K E 6 0 0 4 0 0 2 2 0 2 2 1 0 0 0 0 0 0 0 0 0 0 19 0 1856.9004 Q8N5A0;A0A087WUT6;O60841;A0JLR8;Q05CQ1 Q8N5A0 15 33 EIF5B Eukaryotic translation initiation factor 5B yes no 2 9.1651E-13 102.73 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5413500 5413500 0 5413500 5413500 0 0 0 0 1596 414 1642 4298;4299;4300 6739;6740;6741 6740 3 DDIENIAR RDFNQFIKANEKWGRDDIENIAREVEGKTP ANEKWGRDDIENIAREVEGKTPEEVIEYSA R D D A R E 1 1 1 2 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 8 0 944.45632 O60264;B7ZAX9;B4DZC0 O60264 863 870 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.00098664 119.89 2 1 2.2145 2.502 3.4877 2 Median 2.2145 2.502 3.4877 2 0 Median NaN NaN NaN 0 0 Median 135190000 37085000 98101000 132330000 37085000 95248000 2853000 0 2853000 1597 1391 1643 4301;4302;4303 6742;6743;6744;6745;6746 6742 5 DDIIICEIGDVFK VVVQHVHFDGLGRTKDDIIICEIGDVFKAK TKDDIIICEIGDVFKAKNLIEVMRKSHEAR K D D F K A 0 0 0 3 1 0 1 1 0 4 0 1 0 1 0 0 0 0 0 1 0 0 13 0 1535.7541 Q9Y512 Q9Y512 60 72 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.00011761 88.441 2 1.1566 1.1803 2.3409 2 Median 1.1566 1.1803 2.3409 2 0 Median NaN NaN NaN 0 0 Median 30167000 14258000 15909000 30167000 14258000 15909000 0 0 0 1598 2147 1644 4304;4305 6747;6748;6749;6750 6748 4 DDILINRPAK AYRTFIKGKNYMKQRDDILINRPAKKHLEL YMKQRDDILINRPAKKHLELYDRDLKHFRI R D D A K K 1 1 1 2 0 0 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 10 1 1153.6455 Q8TED0;H0Y8P4 Q8TED0 349 358 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.0010996 98.033 2 0.89568 1.0052 NaN 1 Median 0.89568 1.0052 NaN 1 0 Median NaN NaN NaN 0 0 Median 42559000 11810000 30750000 42559000 11810000 30750000 0 0 0 1599 1936 1645 4306;4307 6751;6752 6752 2 DDINLLPSK FHKRTPNRYHLRSKKDDINLLPSKSSVTKI HLRSKKDDINLLPSKSSVTKICRDPQTPVL K D D S K S 0 0 1 2 0 0 0 0 0 1 2 1 0 0 1 1 0 0 0 0 0 0 9 0 1013.5393 Q643R0;Q9ULW0;B3KM90 Q643R0 349 357 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.0031039 72.643 1 2 1.2848 1.0134 27.888 3 Median 0.64583 0.65459 NaN 1 0 Median 1.3119 1.0556 5.7693 2 0 Median 24053000 12611000 11443000 12932000 7675000 5256800 11121000 4935700 6185800 1600 1837 1646 4308;4309;4310 6753;6754;6755;6756;6757;6758 6758 6 DDISTAAGMVK ASKLRAVLEKLKLSRDDISTAAGMVKGVVD KLSRDDISTAAGMVKGVVDHLLLRLKCDSA R D D V K G 2 0 0 2 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 1 0 0 11 0 1106.5278 Q8N884 Q8N884 177 187 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.00021488 82.645 3 2.5475 2.8688 NaN 1 Median 2.5475 2.8688 NaN 1 0 Median NaN NaN NaN 0 0 Median 103740000 35252000 68489000 103740000 35252000 68489000 0 0 0 1601 1914 1647 4311;4312;4313 6759;6760;6761;6762;6763;6764 6762 1747 6 DDLALFCLQELR IIYEQVMIAALDYGRDDLALFCLQELRRQF YGRDDLALFCLQELRRQFPGSHRVKRLTGM R D D L R R 1 1 0 2 1 1 1 0 0 0 4 0 0 1 0 0 0 0 0 0 0 0 12 0 1491.7392 Q53HG5;A8K4K9;Q15006;H0YAS9;E5RGJ2 Q53HG5 69 80 EMC2 ER membrane protein complex subunit 2 yes no 2 0.041873 43.512 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1602 736 1648 4314 6765 6765 1 DDLGNTLEK VEAIINPTNADIDLKDDLGNTLEKKGGKEF ADIDLKDDLGNTLEKKGGKEFVEAVLELRK K D D E K K 0 0 1 2 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1003.4822 O75367;Q59FH0 O75367 227 235 H2AFY Core histone macro-H2A.1 yes no 2 3.0707E-08 147.19 2 2 1.1227 1.3136 16.001 4 Linear 1.0893 1.295 1.5808 2 0 Median 1.141 0.98206 0.57866 2 0 Median 2243300000 1068100000 1175100000 2010800000 959930000 1050900000 232460000 108220000 124240000 1603 1401 1649 4315;4316;4317;4318 6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6776;6777;6778;6779 6771 14 DDLYAEQMER EITTDLGKHQHMHDRDDLYAEQMEREMRHK HMHDRDDLYAEQMEREMRHKLKTAFKNFIE R D D E R E 1 1 0 2 0 1 2 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 10 0 1268.5343 Q9Y5B9 Q9Y5B9 761 770 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0077908 54.982 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1604 2148 1650 4319 6780 6780 1987 1 DDNFGEGNDGGILDDK LNEKINHLEYEDQYKDDNFGEGNDGGILDD DNFGEGNDGGILDDKLISNNDGGIFDDPPA K D D D K L 0 0 2 5 0 0 1 4 0 1 1 1 0 1 0 0 0 0 0 0 0 0 16 0 1679.6911 A0A024R9J0;O60216 A0A024R9J0 217 232 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 0.00017365 61.11 1 0.61544 0.60473 NaN 1 Median 0.61544 0.60473 NaN 1 0 Median NaN NaN NaN 0 0 Median 8975400 4961000 4014500 8975400 4961000 4014500 0 0 0 1605 280 1651 4320 6781 6781 1 DDNMFQIGK TSRALSSSKQSSSSRDDNMFQIGKMRYVSV QSSSSRDDNMFQIGKMRYVSVRDFKGKVLI R D D G K M 0 0 1 2 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1066.4753 Q6IBA2;Q59G24;P53999;B7Z1Z0;Q6E433 Q6IBA2 60 68 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2 9.0898E-05 106.94 3 1 0.94244 0.99408 2.0137 3 Median 0.94244 0.99408 2.0137 3 0 Median NaN NaN NaN 0 0 Median 100870000 52874000 47994000 100870000 52874000 47994000 0 0 0 1606 1608 1652;1653 4321;4322;4323;4324 6782;6783;6784;6785;6786;6787 6784 1396 6 DDPALATYYGSLFK FFKEFWEQKPLLIQRDDPALATYYGSLFKL RDDPALATYYGSLFKLTDLKSLCSRGMYYG R D D F K L 2 0 0 2 0 0 0 1 0 0 2 1 0 1 1 1 1 0 2 0 0 0 14 0 1559.7508 Q8IUF8;D6RCB6 Q8IUF8 69 82 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes no 2 0.00021847 84.479 1 2 1.2931 1.0121 NaN 1 Median NaN NaN NaN 0 0 Median 1.2931 1.0121 NaN 1 0 Median 8316100 1758600 6557500 2649900 0 2649900 5666200 1758600 3907600 1607 1891 1654 4325;4326;4327 6788;6789;6790;6791 6789 4 DDPENDNSELPTAK ALDELMDGDIIVFQKDDPENDNSELPTAKE KDDPENDNSELPTAKEYFRDLYHRVDVIFC K D D A K E 1 0 2 3 0 0 2 0 0 0 1 1 0 0 2 1 1 0 0 0 0 0 14 0 1543.6638 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5 Q93009 771 784 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 3.2662E-10 124.12 2 1 0.67342 0.65963 12.803 3 Median 0.65187 0.6546 1.0826 2 0 Median 1.0365 0.81679 NaN 1 0 Median 50977000 27856000 23121000 47092000 26111000 20981000 3885700 1745800 2139800 1608 1954 1655 4328;4329;4330 6792;6793;6794;6795;6796 6795 5 DDPSKPVHLTAFLGYK KRSSRHRGKVKSFPKDDPSKPVHLTAFLGY DPSKPVHLTAFLGYKAGMTHIVREVDRPGS K D D Y K A 1 0 0 2 0 0 0 1 1 0 2 2 0 1 2 1 1 0 1 1 0 0 16 1 1786.9254 P39023;Q8TBW1;Q96QL0;H7C422;H7C3M2;B4DN06;F8WCR1;B3KS36 P39023 35 50 RPL3 60S ribosomal protein L3 no no 3 8.7196E-07 90.453 1 2 1.0388 0.90577 17.239 3 Median 1.0388 1.1921 NaN 1 0 Median 1.0423 0.88644 3.0503 2 0 Median 131440000 62210000 69231000 21901000 10868000 11033000 109540000 51343000 58197000 1609 1554;936 1656 4331;4332;4333 6797;6798;6799;6800;6801;6802 6800 6 DDPVTNLNNAFEVAEK HRHRPELIEYDKLRKDDPVTNLNNAFEVAE DPVTNLNNAFEVAEKYLDIPKMLDAEDIVN K D D E K Y 2 0 3 2 0 0 2 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 16 0 1774.8374 A0A0S2Z3G9;O43707;B4DSX0;B4E337;K7EJH8 A0A0S2Z3G9 218 233 ACTN4 Alpha-actinin-4 yes no 2 0.00015175 64.224 2 2.1964 2.2323 NaN 1 Median 2.1964 2.2323 NaN 1 0 Median NaN NaN NaN 0 0 Median 15019000 3010000 12009000 15019000 3010000 12009000 0 0 0 1610 548 1657 4334;4335 6803;6804;6805 6804 3 DDQLTLTPMGR AAIAQLDLLGALEHKDDQLTLTPMGRKMAA LEHKDDQLTLTPMGRKMAAFPLEPKFAKTI K D D G R K 0 1 0 2 0 1 0 1 0 0 2 0 1 0 1 0 2 0 0 0 0 0 11 0 1245.6023 B4DIS6;Q9H6R0;I3L1L6;Q9NPV4;Q05BE5 B4DIS6 544 554 DHX33;DKFZp762F2011 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.012443 50.292 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1611 983 1658 4336 6806 6806 783 1 DDSPLYIFDSSYGEHPK KMKMKYYIEYMESTRDDSPLYIFDSSYGEH SPLYIFDSSYGEHPKRRKLLEDYKVPKFFT R D D P K R 0 0 0 3 0 0 1 1 1 1 1 1 0 1 2 3 0 0 2 0 0 0 17 0 1968.8741 B2WTI3;B2WTI4;K7EJU9;A0A0S2PZM4;Q6NYC1 B2WTI3 126 142 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 yes no 2 0.00050692 62.088 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3477400 0 3477400 3477400 0 3477400 0 0 0 1612 543 1659 4337;4338;4339 6807;6808;6809 6808 3 DDTHYLLYIYDK WRIRPLPEEMLSYARDDTHYLLYIYDKMRL YARDDTHYLLYIYDKMRLEMWERGNGQPVQ R D D D K M 0 0 0 3 0 0 0 0 1 1 2 1 0 0 0 0 1 0 3 0 0 0 12 0 1557.7351 Q01780;B4DKG8;B4DFE4 Q01780 439 450 EXOSC10 Exosome component 10 yes no 2 8.3904E-05 112.13 1 2 1.2948 1.0471 4.4941 2 Median NaN NaN NaN 0 0 Median 1.2948 1.0471 4.4941 2 0 Median 19798000 11771000 8026600 4705300 4705300 0 15093000 7066000 8026600 1613 1676 1660 4340;4341;4342 6810;6811;6812 6812 3 DDVAPESGDTTVK KKRQQARKTASVLSKDDVAPESGDTTVKKP SKDDVAPESGDTTVKKPESKKEQTPEHGKK K D D V K K 1 0 0 3 0 0 1 1 0 0 0 1 0 0 1 1 2 0 0 2 0 0 13 0 1332.6045 O76021;J3QSV6;A0PJ61;Q32Q62 O76021 319 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 4.5595E-07 112.13 2 2 0.66898 0.68998 14.98 4 Median 0.65267 0.77247 2.7542 2 0 Median 0.69963 0.60138 6.2213 2 0 Median 1423200000 855030000 568180000 1206600000 724560000 482030000 216610000 130470000 86143000 1614 1415 1661 4343;4344;4345;4346 6813;6814;6815;6816;6817 6815 5 DDVAQTDLLQIDPNFGSK KVKGLVLGPIHKNQKDDVAQTDLLQIDPNF AQTDLLQIDPNFGSKEDFDSLLQSAKKKSI K D D S K E 1 0 1 4 0 2 0 1 0 1 2 1 0 1 1 1 1 0 0 1 0 0 18 0 1974.9535 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599;F5H0E2 B4E2Z3 151 168 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.013768 41.644 1 1 1.6406 1.3309 NaN 1 Median NaN NaN NaN 0 0 Median 1.6406 1.3309 NaN 1 0 Median 2816300 903710 1912600 0 0 0 2816300 903710 1912600 1615 1072 1662 4347;4348 6818;6819 6819 2 DDVDVALLPTIVEK ESLLFYGCEEREQEKDDVDVALLPTIVEKV KDDVDVALLPTIVEKVILPKLTVIAENMWD K D D E K V 1 0 0 3 0 0 1 0 0 1 2 1 0 0 1 0 1 0 0 3 0 0 14 0 1525.8239 Q8N2J1;B3KY25;B3KSC0;Q9Y5B6 Q8N2J1 20 33 PAXBP1 PAX3- and PAX7-binding protein 1 yes no 2 0.00011813 82.171 1 1.1435 1.133 NaN 1 Median 1.1435 1.133 NaN 1 0 Median NaN NaN NaN 0 0 Median 8253600 3620500 4633100 8253600 3620500 4633100 0 0 0 1616 938 1663 4349 6820 6820 1 DDVIQICGPADGIR LFTNFSGADLLKLTRDDVIQICGPADGIRL RDDVIQICGPADGIRLFNALKGRMVRPRLT R D D I R L 1 1 0 3 1 1 0 2 0 3 0 0 0 0 1 0 0 0 0 1 0 0 14 0 1527.7351 A0A024R120;Q12800;F8VWL0 A0A024R120 363 376 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.016025 48.004 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10555000 10555000 0 10555000 10555000 0 0 0 0 1617 66 1664 4350 6821;6822 6821 2 DDVSISVEEGK GDPPLGALLAVEHVKDDVSISVEEGKENIL EHVKDDVSISVEEGKENILHVSENVIFTDV K D D G K E 0 0 0 2 0 0 2 1 0 1 0 1 0 0 0 2 0 0 0 2 0 0 11 0 1176.551 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5;V9GZ76 P07814 26 36 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 7.8729E-05 98.055 2 2.3856 2.685 NaN 1 Median 2.3856 2.685 NaN 1 0 Median NaN NaN NaN 0 0 Median 111140000 24486000 86651000 111140000 24486000 86651000 0 0 0 1618 1454 1665 4351;4352 6823;6824;6825 6824 3 DEAEDLLGR IFLKNEDEEEEEEEKDEAEDLLGRGSRAAL EEEEEKDEAEDLLGRGSRAALLTERTRNEM K D E G R G 1 1 0 2 0 0 2 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1016.4775 Q9Y5B9 Q9Y5B9 445 453 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0018198 80.438 2 0.68682 0.73381 4.1015 2 Median 0.68682 0.73381 4.1015 2 0 Median NaN NaN NaN 0 0 Median 74477000 40911000 33565000 74477000 40911000 33565000 0 0 0 1619 2148 1666 4353;4354 6826;6827;6828 6826 3 DEAEDYYDVITHPMDFQTVQNK VKYRFSWPFREPVTRDEAEDYYDVITHPMD DVITHPMDFQTVQNKCSCGSYRSVQEFLTD R D E N K C 1 0 1 4 0 2 2 0 1 1 0 1 1 1 1 0 2 0 2 2 0 0 22 0 2657.1592 Q9UIG0 Q9UIG0 1371 1392 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 1.0737E-23 112.58 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62688000 0 62688000 49369000 0 49369000 13319000 0 13319000 1620 2103 1667 4355;4356;4357;4358 6829;6830;6831;6832 6830 1924 4 DEALSDGDDLRDFPSDLK VAKVTVKSENLKVIKDEALSDGDDLRDFPS LSDGDDLRDFPSDLKKAHHLKRGATMNEDS K D E L K K 1 1 0 6 0 0 1 1 0 0 3 1 0 1 1 2 0 0 0 0 0 0 18 1 2006.9069 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPI9;D2CPJ0;D2CPK1;E7EUB5;D2CPJ8 A0A024R2M8 90 107 XPC DNA repair protein complementing XP-C cells yes no 2;3 7.4131E-05 61.375 3 0.53164 0.59982 NaN 1 Median 0.53164 0.59982 NaN 1 0 Median NaN NaN NaN 0 0 Median 22712000 12624000 10088000 22712000 12624000 10088000 0 0 0 1621 118 1668 4359;4360;4361 6833;6834;6835 6833 2 DEAQNEGPATESEAPLK KEEEAIKEEVVKEPKDEAQNEGPATESEAP AQNEGPATESEAPLKEDGLLPKPLSSGGEE K D E L K E 3 0 1 1 0 1 4 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 17 0 1784.8065 B3KTJ9;Q8N163;E2PSM9;G3V119;H0YB24 B3KTJ9 600 616 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 4.7587E-07 120.87 2 1.1328 1.1434 NaN 1 Median 1.1328 1.1434 NaN 1 0 Median NaN NaN NaN 0 0 Median 13268000 6736900 6531300 13268000 6736900 6531300 0 0 0 1622 943 1669 4362;4363 6836;6837;6838 6838 3 DECNVVEVVAR HVLALTMLCLTEGAKDECNVVEVVARNHDH EGAKDECNVVEVVARNHDHQEIAVPVANLK K D E A R N 1 1 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 11 0 1288.6082 O75607 O75607 77 87 NPM3 Nucleoplasmin-3 yes yes 2 0.00018263 93.556 1 1 1.387 1.2827 53.618 2 Median 1.832 1.874 NaN 1 0 Median 1.0501 0.87794 NaN 1 0 Median 38380000 14397000 23983000 34806000 12544000 22262000 3573500 1853200 1720300 1623 1409 1670 4364;4365 6839;6840;6841 6839 3 DEDISLTLNMNEEEVEK QGQTRYHFLILLFSKDEDISLTLNMNEEEV DISLTLNMNEEEVEKRFEGRLTKNMSGSLY K D E E K R 0 0 2 2 0 0 5 0 0 1 2 1 1 0 0 1 1 0 0 1 0 0 17 0 2006.899 A0A024R4Z6;Q08945 A0A024R4Z6 280 296 SSRP1 FACT complex subunit SSRP1 yes no 2 2.8308E-25 138.02 4 0.90373 1.016 1.0835 2 Median 0.90373 1.016 1.0835 2 0 Median NaN NaN NaN 0 0 Median 184930000 95675000 89257000 184930000 95675000 89257000 0 0 0 1624 167 1671 4366;4367;4368;4369 6842;6843;6844;6845;6846;6847;6848;6849;6850 6847 136 9 DEDLFR DKAYVVLGQFLVLKKDEDLFREWLKDTCGA LGQFLVLKKDEDLFREWLKDTCGANAKQSR K D E F R E 0 1 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 6 0 793.36063 A0A024R5H0;O75531;B2R4V4;A0A0C4DFW4;B2RC94;A0A024RDZ1;Q5JUR7 A0A024R5H0 55 60 BANF1;TEX30;RP11-484I6.3 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed;Testis-expressed sequence 30 protein yes no 2 0.037313 122.5 1 1.0789 1.1965 NaN 1 Median 1.0789 1.1965 NaN 1 0 Median NaN NaN NaN 0 0 Median 66871000 26196000 40675000 66871000 26196000 40675000 0 0 0 1625 181 1672 4370 6851 6851 1 DEENNPLETEYGLSVYK TTLVAFPSSSVYPTKDEENNPLETEYGLSV ENNPLETEYGLSVYKDHQTITIQEMPEKAP K D E Y K D 0 0 2 1 0 0 4 1 0 0 2 1 0 0 1 1 1 0 2 1 0 0 17 0 1998.9058 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 178 194 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 7.3436E-14 124.86 1 2 0.92551 0.75672 35.623 3 Median 1.3542 1.3342 NaN 1 0 Median 0.89534 0.72345 6.3581 2 0 Median 31307000 13183000 18124000 19584000 7274800 12309000 11723000 5908200 5815000 1626 568 1673 4371;4372;4373 6852;6853;6854;6855;6856 6852 5 DEESGGGSNPFQHLEK ______________________________ EESGGGSNPFQHLEKSAVLQEARVFNETPI K D E E K S 0 0 1 1 0 1 3 3 1 0 1 1 0 1 1 2 0 0 0 0 0 0 16 0 1729.7544 Q9Y678;D6RG17 Q9Y678 9 24 COPG1 Coatomer subunit gamma-1 yes no 2 0.0063121 50.354 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1627 2151 1674 4374 6857 6857 1 DEETGLCLLPLK EENLTYLQLKERCIKDEETGLCLLPLKEKK CIKDEETGLCLLPLKEKKKQVQTSQKNTLR K D E L K E 0 0 0 1 1 0 2 1 0 0 4 1 0 0 1 0 1 0 0 0 0 0 12 0 1386.7065 P15924;Q4LE79 P15924 2436 2447 DSP;DSP variant protein Desmoplakin yes no 2 6.5403E-14 129.38 2 0.43595 0.45657 NaN 1 Median 0.43595 0.45657 NaN 1 0 Median NaN NaN NaN 0 0 Median 18162000 14264000 3897800 18162000 14264000 3897800 0 0 0 1628 1486 1675 4375;4376 6858;6859 6858 2 DEFGELEGTRPNK PTLLDADFPDSDLNKDEFGELEGTRPNKKF NKDEFGELEGTRPNKKFKCKHCLKIFRSTA K D E N K K 0 1 1 1 0 0 3 2 0 0 1 1 0 1 1 0 1 0 0 0 0 0 13 1 1490.7001 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 532 544 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 0.0037161 77.744 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1629 2109 1676 4377 6860 6860 1 DEIALVLFGTDGTDNPLSGGDQYQNITVHR VITMFVQRQVFAENKDEIALVLFGTDGTDN PLSGGDQYQNITVHRHLMLPDFDLLEDIES K D E H R H 1 1 2 4 0 2 1 4 1 2 3 0 0 1 1 1 3 0 1 2 0 0 30 0 3244.5636 P13010;Q53TC2;C9JZ81 P13010 52 81 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 2.3973E-11 57.688 2 0.34148 0.3713 9.7777 2 Median 0.34148 0.3713 9.7777 2 0 Median NaN NaN NaN 0 0 Median 85716000 63023000 22694000 85716000 63023000 22694000 0 0 0 1630 1476 1677 4378;4379 6861;6862;6863;6864 6861 4 DEICNEMVEQMQQR LKERQEKLQLEMHLRDEICNEMVEQMQQRE RDEICNEMVEQMQQREQWCSEHLDTQKELL R D E Q R E 0 1 1 1 1 3 3 0 0 1 0 0 2 0 0 0 0 0 0 1 0 0 14 0 1808.7492 O95235;H0YAC9 O95235 590 603 KIF20A Kinesin-like protein KIF20A yes no 2 0.00028861 67.726 2 0.49815 0.49948 NaN 1 Median 0.49815 0.49948 NaN 1 0 Median NaN NaN NaN 0 0 Median 9243700 2873600 6370100 9243700 2873600 6370100 0 0 0 1631 1421 1678 4380;4381 6865;6866 6866 1112;1113 2 DEIENSIVHR LIRRRRTRIGYSFKKDEIENSIVHRVQGVF YSFKKDEIENSIVHRVQGVFQRASAKWKDD K D E H R V 0 1 1 1 0 0 2 0 1 2 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1210.5942 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 82 91 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 3.6565E-16 154.56 2 1 0.99569 1.1125 4.3262 2 Median 0.99569 1.1125 4.3262 2 0 Median NaN NaN NaN 0 0 Median 118020000 69797000 48219000 118020000 69797000 48219000 0 0 0 1632 925 1679 4382;4383;4384 6867;6868;6869;6870 6868 4 DEIFQVQWSPHNETILASSGTDR LRNLKLKLHSFESHKDEIFQVQWSPHNETI SPHNETILASSGTDRRLNVWDLSKIGEEQS K D E D R R 1 1 1 2 0 2 2 1 1 2 1 0 0 1 1 3 2 1 0 1 0 0 23 0 2629.2409 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5;B4DRT0 Q09028 318 340 RBBP4 Histone-binding protein RBBP4 yes no 3 3.6181E-23 119.83 1 2 1.64 1.3431 43.052 3 Median 0.60858 0.64345 NaN 1 0 Median 1.6597 1.3561 1.3575 2 0 Median 64925000 34132000 30792000 40742000 24496000 16246000 24182000 9636300 14546000 1633 1695 1680 4385;4386;4387 6871;6872;6873;6874;6875;6876 6872 6 DEILPTTPISEQK PKKPLPDHVSIVEPKDEILPTTPISEQKGG PKDEILPTTPISEQKGGKPEPPAMPQPVPT K D E Q K G 0 0 0 1 0 1 2 0 0 2 1 1 0 0 2 1 2 0 0 0 0 0 13 0 1469.7613 P23396;Q53G83;E9PL09;E9PPU1;H0YEU2;Q9NQS8;E9PSF4 P23396 215 227 RPS3 40S ribosomal protein S3 yes no 2 5.4124E-06 105.86 3 2 1.1496 1.1472 17.208 4 Median 1.124 1.3284 1.1906 2 0 Median 1.1939 0.98676 1.7563 2 0 Median 1112100000 529660000 582430000 1035000000 494260000 540740000 77088000 35401000 41687000 1634 1511 1681 4388;4389;4390;4391;4392 6877;6878;6879;6880;6881;6882;6883;6884;6885;6886;6887;6888;6889;6890 6882 14 DEKIEELEALLQEAR KESLTSFYQEEIQERDEKIEELEALLQEAR DEKIEELEALLQEARQQSVAHQQSGSELAL R D E A R Q 2 1 0 1 0 1 5 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 15 1 1784.9156 O95235 O95235 645 659 KIF20A Kinesin-like protein KIF20A yes yes 3 0.0014512 42.913 2 1.3299 1.1117 8.4264 2 Median NaN NaN NaN 0 0 Median 1.3299 1.1117 8.4264 2 0 Median 8356500 3021800 5334700 0 0 0 8356500 3021800 5334700 1635 1421 1682 4393;4394 6891;6892;6893 6892 3 DELADEIANSSGK LAAAERAKRQAQQERDELADEIANSSGKGA ERDELADEIANSSGKGALALEEKRRLEARI R D E G K G 2 0 1 2 0 0 2 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 13 0 1347.6154 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1704 1716 MYH9;FLJ00279 Myosin-9 yes no 2 3.9432E-05 92.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11334000 11334000 0 11334000 11334000 0 0 0 0 1636 81 1683 4395 6894;6895 6895 2 DELHIVEAEAMNYEGSPIK HQLSLRTVSLGAGAKDELHIVEAEAMNYEG IVEAEAMNYEGSPIKVTLATLKMSVQPTVS K D E I K V 2 0 1 1 0 0 4 1 1 2 1 1 1 0 1 1 0 0 1 1 0 0 19 0 2144.0096 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86 A0A0S2Z4G7 55 73 NPM1 Nucleophosmin yes no 2;3 2.483E-24 137.44 7 4 0.97827 1.0305 71.252 10 Median 1.4944 1.7602 31.931 6 0 Plateau 0.50389 0.41443 37.639 4 0 Median 1446000000 619290000 826760000 1298600000 519370000 779190000 147490000 99926000 47565000 1637 559 1684;1685 4396;4397;4398;4399;4400;4401;4402;4403;4404;4405;4406 6896;6897;6898;6899;6900;6901;6902;6903;6904;6905;6906;6907;6908;6909;6910;6911;6912;6913;6914;6915;6916 6898 416 21 DELIHELK PLLVAYKEDEIPVLKDELIHELKQTLNAIK DEIPVLKDELIHELKQTLNAIKLEEKGVYV K D E L K Q 0 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 995.52876 Q8N5A0;A0A087WUT6;O60841;B3KM86;D3DVI5 Q8N5A0 961 968 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.030551 51.864 1 1.515 1.7068 NaN 1 Median 1.515 1.7068 NaN 1 0 Median NaN NaN NaN 0 0 Median 59296000 17335000 41961000 59296000 17335000 41961000 0 0 0 1638 414 1686 4407 6917 6917 1 DELKPAVTQLLWER TIQCLEEILCEFVQKDELKPAVTQLLWERA KDELKPAVTQLLWERATEKVACCPLERCSS K D E E R A 1 1 0 1 0 1 2 0 0 0 3 1 0 0 1 0 1 1 0 1 0 0 14 1 1696.9148 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 746 759 NCAPD2 Condensin complex subunit 1 yes no 3 1.9119E-06 100.45 2 2 1.0588 1.0508 15.108 4 Median 0.80538 0.91743 4.5578 2 0 Median 1.3879 1.1857 2.4469 2 0 Median 67950000 34593000 33357000 44484000 25582000 18901000 23466000 9011000 14455000 1639 908 1687 4408;4409;4410;4411 6918;6919;6920;6921;6922;6923;6924;6925;6926 6922 9 DELLGEKPEVK KHEKRMSKDEERAVKDELLGEKPEVKQKWA RAVKDELLGEKPEVKQKWASRLLAKLRKDI K D E V K Q 0 0 0 1 0 0 3 1 0 0 2 2 0 0 1 0 0 0 0 1 0 0 11 1 1255.666 Q6FI30;B7Z4T6;P08651 Q6FI30 50 60 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 2 1.239E-11 140.49 2 1 0.71736 0.8169 7.9145 3 Plateau 0.69074 0.80856 4.1571 2 0 Median 0.82438 0.71192 NaN 1 0 Median 163900000 99488000 64416000 159210000 96827000 62381000 4696400 2660600 2035800 1640 1091 1688 4412;4413;4414 6927;6928;6929;6930;6931;6932;6933 6930 7 DELLSEKPEVK KHEKRMSKEEERAVKDELLSEKPEVKQKWA RAVKDELLSEKPEVKQKWASRLLAKLRKDI K D E V K Q 0 0 0 1 0 0 3 0 0 0 2 2 0 0 1 1 0 0 0 1 0 0 11 1 1285.6765 B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857;S4R3K4 B1AKN6 58 68 NFIA Nuclear factor 1;Nuclear factor 1 A-type yes no 2 0.00042525 98.048 2 1 0.68184 0.78977 26.221 3 Median 0.69386 0.81142 3.8248 2 0 Median 0.59834 0.51648 NaN 1 0 Median 103600000 60311000 43286000 98675000 57525000 41150000 4921700 2786000 2135700 1641 816 1689 4415;4416;4417 6934;6935;6936;6937 6935 4 DELPYTFAAPESYEELR KGLISGKERAGKATRDELPYTFAAPESYEE LPYTFAAPESYEELRSLLLGRSMEEQLLVV R D E L R S 2 1 0 1 0 0 4 0 0 0 2 0 0 1 2 1 1 0 2 0 0 0 17 0 2028.9317 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 420 436 NOP14 Nucleolar protein 14 yes no 2 8.7041E-05 61.375 2 2 1.2866 1.1803 2.4926 4 Median 1.104 1.1546 2.3048 2 0 Median 1.4475 1.1957 1.0439 2 0 Median 87108000 38640000 48468000 54141000 23794000 30347000 32967000 14846000 18121000 1642 790 1690 4418;4419;4420;4421 6938;6939;6940;6941;6942;6943;6944;6945;6946 6941 9 DELTDLDQSNVTEETPEGEEHHPVADTENK DKRGGSGSHNWGTVKDELTDLDQSNVTEET PEGEEHHPVADTENKENEVEEVKEEGPKEM K D E N K E 1 0 2 4 0 1 7 1 2 0 2 1 0 0 2 1 4 0 0 2 0 0 30 0 3377.4655 Q63HR1;Q5VU21;D3DQ69 Q63HR1 223 252 DKFZp686P17171;SERBP1 yes no 3;4 5.0769E-11 60.176 4 2.2432 2.259 18.145 3 Median 2.2432 2.259 18.145 3 0 Median NaN NaN NaN 0 0 Median 70771000 19468000 51303000 70771000 19468000 51303000 0 0 0 1643 1832 1691 4422;4423;4424;4425 6947;6948;6949;6950;6951;6952 6950 6 DEMLQMIR QQGRLVDQNLNKIGKDEMLQMIRHGATHVF NLNKIGKDEMLQMIRHGATHVFASKESEIT K D E I R H 0 1 0 1 0 1 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 8 0 1034.4889 O60264;B7ZAX9;B4DZC0 O60264 648 655 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.0022641 74.415 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5494400 0 5494400 5494400 0 5494400 0 0 0 1644 1391 1692 4426 6953 6953 1061;1062 1 DENFAATDAIPSNVLR EWMKLEDFQKHLDGKDENFAATDAIPSNVL ENFAATDAIPSNVLRDAVKNGDYITVKVAL K D E L R D 3 1 2 2 0 0 1 0 0 1 1 0 0 1 1 1 1 0 0 1 0 0 16 0 1731.8428 Q99549;B3KS10 Q99549 556 571 MPHOSPH8 M-phase phosphoprotein 8 yes no 2 0.0037348 55.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5348100 5348100 0 5348100 5348100 0 0 0 0 1645 1994 1693 4427 6954 6954 1 DENLALYVENQFR LNENSYVPREAGSQKDENLALYVENQFREF QKDENLALYVENQFREFKLSKVWRDQHFVK K D E F R E 1 1 2 1 0 1 2 0 0 0 2 0 0 1 0 0 0 0 1 1 0 0 13 0 1609.7736 A8K6Q8;P02786;G3V0E5 A8K6Q8 162 174 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.053808 50.354 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 902890 902890 0 0 0 0 902890 902890 0 1646 761 1694 4428 6955 6955 1 DEPEDDGYFVPPK KKEKENGFSSPPQIKDEPEDDGYFVPPKED IKDEPEDDGYFVPPKEDIKPLKRPRDEDDA K D E P K E 0 0 0 3 0 0 2 1 0 0 0 1 0 1 3 0 0 0 1 1 0 0 13 0 1506.6515 P11387;B9EG90;Q6PK95;Q6NWZ5 P11387 118 130 TOP1 DNA topoisomerase 1 yes no 2 2.8566E-13 125.75 2 2 1.214 1.1914 12.604 4 Median 1.1265 1.3001 0.26895 2 0 Median 1.3144 1.0524 5.4597 2 0 Median 443650000 209690000 233960000 419550000 199140000 220410000 24100000 10546000 13554000 1647 1470 1695 4429;4430;4431;4432 6956;6957;6958;6959;6960;6961;6962;6963;6964;6965 6961 10 DEPEEELQK KEKKGKGSLGSQGAKDEPEEELQKGMGTVE GSQGAKDEPEEELQKGMGTVEGGDQSNPKS K D E Q K G 0 0 0 1 0 1 4 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 9 0 1115.4982 E7ETY2;B4DRA2;Q9UFD4;H0YA99;Q13428 Q13428 1415 1423 TCOF1;DKFZp434G1035 Treacle protein no no 2 0.0019479 78.77 3 0.47526 0.48504 NaN 1 Median 0.47526 0.48504 NaN 1 0 Median NaN NaN NaN 0 0 Median 68890000 60391000 8498900 68890000 60391000 8498900 0 0 0 1648 1712;1225 1696 4433;4434;4435 6966;6967;6968 6968 3 DEPIHILNVAIK EAGHTSLYDEDKVPRDEPIHILNVAIKTDC VPRDEPIHILNVAIKTDCDIEDDRLAAMFR R D E I K T 1 0 1 1 0 0 1 0 1 3 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1360.7715 A0A024R0Y2;B2ZZ90;Q13085;A2NX49 A0A024R0Y2 1205 1216 hCG_30204;ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.035332 45.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4611500 0 4611500 4611500 0 4611500 0 0 0 1649 60 1697 4436 6969 6969 1 DEPTGEVLSLVGK LVLQADRSLIDRTRRDEPTGEVLSLVGKLE RRDEPTGEVLSLVGKLEGTRMGDKAQRTKP R D E G K L 0 0 0 1 0 0 2 2 0 0 2 1 0 0 1 1 1 0 0 2 0 0 13 0 1342.698 O75643 O75643 34 46 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00037296 62.166 2 2 1.0542 0.99499 11.322 4 Median 0.98418 1.1057 2.8053 2 0 Median 1.1238 0.91069 0.40239 2 0 Median 172970000 87746000 85220000 159590000 81472000 78113000 13380000 6274000 7106500 1650 1411 1698 4437;4438;4439;4440 6970;6971;6972;6973;6974 6972 5 DEQLESLFQR YSILRHVAEVLEYTKDEQLESLFQRTAWVF LEYTKDEQLESLFQRTAWVFDDKYKRPGYG K D E Q R T 0 1 0 1 0 2 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 10 0 1263.6095 Q53XC0;P05198;H0YJS4;G3V4T5 Q53XC0 124 133 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.00019263 94.309 2 1 1.3957 1.453 58.939 3 Plateau 1.3654 1.4085 4.4044 2 0 Median 0.58954 0.50818 NaN 1 0 Median 42824000 18682000 24142000 41155000 17715000 23440000 1668500 966580 701960 1651 1445 1699 4441;4442;4443 6975;6976;6977;6978;6979;6980 6975 6 DEQPSGSVETGFEDK RLLSCPGTVAKDLRRDEQPSGSVETGFEDK DEQPSGSVETGFEDKIPKRRFSEMQNERRE R D E D K I 0 0 0 2 0 1 3 2 0 0 0 1 0 1 1 2 1 0 0 1 0 0 15 0 1623.69 Q9NVV4;Q5T851 Q9NVV4 43 57 MTPAP Poly(A) RNA polymerase, mitochondrial yes no 2 0.007883 50.207 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1652 2075 1700 4444 6981 6981 1 DEQQISAAVEK EAVGGKALPCIVDVRDEQQISAAVEKAVKK VDVRDEQQISAAVEKAVKKFGAYTIAKYGM R D E E K A 2 0 0 1 0 2 2 0 0 1 0 1 0 0 0 1 0 0 0 1 0 0 11 0 1216.5935 B2R923;A0A024R159;Q6YN16 B2R923 77 87 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 3.0387E-16 137.46 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7588100 0 7588100 7588100 0 7588100 0 0 0 1653 70 1701 4445 6982 6982 1 DERQEDPYGPQTK RPRFEPVHFVASSSKDERQEDPYGPQTKEV SKDERQEDPYGPQTKEVNEQTHFASMPRDI K D E T K E 0 1 0 2 0 2 2 1 0 0 0 1 0 0 2 0 1 0 1 0 0 0 13 1 1561.7009 Q6NUN2;A3F769;O15226 Q6NUN2 69 81 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.0010796 70.488 1 0.77982 0.86317 NaN 1 Median 0.77982 0.86317 NaN 1 0 Median NaN NaN NaN 0 0 Median 7674400 4262600 3411800 7674400 4262600 3411800 0 0 0 1654 655 1702 4446 6983 6983 1 DESSPYAAMLAAQDVAQR TICRVTGGMKVKADRDESSPYAAMLAAQDV SPYAAMLAAQDVAQRCKELGITALHIKLRA R D E Q R C 5 1 0 2 0 2 1 0 0 0 1 0 1 0 1 2 0 0 1 1 0 0 18 0 1921.884 P62263;H0YB22;E5RH77 P62263 67 84 RPS14 40S ribosomal protein S14 yes no 2 1.8842E-05 69.716 2 1 1.568 1.3342 NaN 1 Median NaN NaN NaN 0 0 Median 1.568 1.3342 NaN 1 0 Median 2846800 951900 1894900 0 0 0 2846800 951900 1894900 1655 1638 1703;1704 4447;4448;4449 6984;6985;6986 6985 1418 3 DETEFYLGK REHTALLKIEGVYARDETEFYLGKRCAYVY EGVYARDETEFYLGKRCAYVYKAKNNTVTP R D E G K R 0 0 0 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1100.5026 P18077;F8WBS5;F8WB72;C9K025 P18077 37 45 RPL35A 60S ribosomal protein L35a yes no 1;2 0.00050627 98.299 4 2 0.88065 0.97597 21.474 6 Median 0.89528 1.0355 6.3603 4 0 Median 0.81938 0.67698 0.39295 2 0 Median 927310000 481090000 446220000 851940000 439460000 412480000 75367000 41628000 33740000 1656 1497 1705 4450;4451;4452;4453;4454;4455 6987;6988;6989;6990;6991;6992;6993;6994;6995;6996 6990 8 DETIHIYDMK SAVAVNSRFVVTGSKDETIHIYDMKKKIEH VTGSKDETIHIYDMKKKIEHGALVHHSGTI K D E M K K 0 0 0 2 0 0 1 0 1 2 0 1 1 0 0 0 1 0 1 0 0 0 10 0 1263.5805 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 61 70 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 1.7112E-16 154.85 2 4 1.3847 1.257 42.502 6 Median 1.4489 1.5958 19.738 2 0 Median 1.0992 0.90013 38.07 4 0 Median 128950000 47822000 81124000 110870000 38695000 72179000 18072000 9127500 8944800 1657 580 1706;1707 4456;4457;4458;4459;4460;4461 6997;6998;6999;7000;7001;7002;7003;7004;7005 7000 433 9 DETLTYAQVDR EKARQTPHKPFLLFRDETLTYAQVDRRSNQ LLFRDETLTYAQVDRRSNQVARALHDHLGL R D E D R R 1 1 0 2 0 1 1 0 0 0 1 0 0 0 0 0 2 0 1 1 0 0 11 0 1309.615 Q53GS2;O14975 Q53GS2 76 86 SLC27A2 Very long-chain acyl-CoA synthetase yes no 2 0.00058585 74.162 2 0.85901 0.86564 NaN 1 Median 0.85901 0.86564 NaN 1 0 Median NaN NaN NaN 0 0 Median 7794200 4041700 3752500 7794200 4041700 3752500 0 0 0 1658 1370 1708 4462;4463 7006;7007 7007 1 DETNYGIPQR SASRDKTIIMWKLTRDETNYGIPQRALRGH WKLTRDETNYGIPQRALRGHSHFVSDVVIS R D E Q R A 0 1 1 1 0 1 1 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 10 0 1191.552 E9KL35;P63244;D6RAC2;D6RHH4;D6R9Z1;D6R9L0;D6REE5;D6RFX4;B4DVD2;D6RBD0;D6RFZ9;D6RAU2;E9PD14;B4E0C3;D6RGK8;D6R909;B4DWC6 E9KL35 48 57 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 5.0494E-10 135.83 2 1 1.7891 1.9178 6.6715 3 Median 1.7287 1.9779 4.3685 2 0 Median 2.1888 1.7854 NaN 1 0 Median 286880000 102130000 184750000 277420000 98933000 178490000 9452700 3195100 6257600 1659 1227 1709 4464;4465;4466 7008;7009;7010;7011;7012 7009 5 DETSGLHLLPLPESAPALPTEEQVQR QGRTSYAQLLEECPRDETSGLHLLPLPESA PESAPALPTEEQVQRSLQAVPGAKDGTSLW R D E Q R S 2 1 0 1 0 2 4 1 1 0 5 0 0 0 4 2 2 0 0 1 0 0 26 0 2826.44 A0A075B730;A0A087X1U6;P58107 A0A075B730 1080 1105 EPPK1 Epiplakin no no 3 0.00013172 35.179 2 1.604 1.5865 NaN 1 Median 1.604 1.5865 NaN 1 0 Median NaN NaN NaN 0 0 Median 23226000 4663800 18562000 23226000 4663800 18562000 0 0 0 1660 397;1622 1710 4467;4468 7013;7014;7015 7015 3 DETVSDCSPHIANIGR GTMNLGGSLTRQMEKDETVSDCSPHIANIG ETVSDCSPHIANIGRLVEDMENKIRSTLNE K D E G R L 1 1 1 2 1 0 1 1 1 2 0 0 0 0 1 2 1 0 0 1 0 0 16 0 1769.8003 B1AK87;B1AK85;B2R7T8;B1AK88;B4DWA6;P47756;Q7L4N0 B1AK87 188 203 CAPZB F-actin-capping protein subunit beta yes no 2;3 1.7025E-07 101.71 5 1.0379 1.0292 NaN 1 Median 1.0379 1.0292 NaN 1 0 Median NaN NaN NaN 0 0 Median 17909000 4585300 13324000 17909000 4585300 13324000 0 0 0 1661 814 1711 4469;4470;4471;4472;4473 7016;7017;7018;7019;7020;7021 7021 6 DEVASLLFDPK QRLALPQSDASLLSRDEVASLLFDPKEAAT LLSRDEVASLLFDPKEAATIDRDTAFAIGC R D E P K E 1 0 0 2 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 1 0 0 11 0 1232.6289 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;Q6P664 B2RWN5 24 34 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00026225 90.108 2 2 1.0743 1.0432 4.7087 4 Median 0.92648 1.0432 0.67487 2 0 Median 1.2758 1.0168 7.7116 2 0 Median 170210000 84221000 85986000 148420000 75444000 72974000 21790000 8777100 13012000 1662 897 1712 4474;4475;4476;4477 7022;7023;7024;7025;7026;7027;7028;7029;7030;7031 7023 9 DEVLENVSPSCPK LLLLLFLDAANAQARDEVLENVSPSCPKDA ARDEVLENVSPSCPKDAVRFKHLRKYVYNY R D E P K D 0 0 1 1 1 0 2 0 0 0 1 1 0 0 2 2 0 0 0 2 0 0 13 0 1472.6817 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 26 38 yes yes 2 0.00012866 90.827 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4235200 4235200 0 2790200 2790200 0 1444900 1444900 0 + 1663 1146 1713 4478;4479 7032;7033;7034 7032 3 DEVVAEHPDASGEEIEELLR GDAASQFLVFCQKHRDEVVAEHPDASGEEI EHPDASGEEIEELLRSQWSLLSEKQRARYN R D E L R S 2 1 0 2 0 0 6 1 1 1 2 0 0 0 1 1 0 0 0 2 0 0 20 0 2236.0495 O96028;Q05CW4;H0Y9L4 O96028 469 488 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 0.029105 16.716 1 1.0995 1.1201 NaN 1 Median 1.0995 1.1201 NaN 1 0 Median NaN NaN NaN 0 0 Median 6977300 3378600 3598700 6977300 3378600 3598700 0 0 0 1664 1435 1714 4480 7035;7036;7037 7035 3 DEYTFSPGK NDGEDEFVPSDGLDKDEYTFSPGKSKASPE SDGLDKDEYTFSPGKSKASPEKSLHDKKSQ K D E G K S 0 0 0 1 0 0 1 1 0 0 0 1 0 1 1 1 1 0 1 0 0 0 9 0 1042.4607 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1391 1399 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.0042156 70.919 2 0.58014 0.62213 NaN 1 Median 0.58014 0.62213 NaN 1 0 Median NaN NaN NaN 0 0 Median 37503000 28874000 8629400 37503000 28874000 8629400 0 0 0 1665 1679 1715 4481;4482 7038;7039;7040 7040 3 DFAAEVVHPGDLK WGGNKTYTAYVDLEKDFAAEVVHPGDLKNS EKDFAAEVVHPGDLKNSVEVALNKLLDPIR K D F L K N 2 0 0 2 0 0 1 1 1 0 1 1 0 1 1 0 0 0 0 2 0 0 13 0 1396.6987 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 298 310 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 6.6302E-48 169.58 2 2 1.9763 1.5344 NaN 1 Median NaN NaN NaN 0 0 Median 1.9763 1.5344 NaN 1 0 Median 48120000 1067000 47053000 42307000 0 42307000 5813100 1067000 4746100 1666 567 1716 4483;4484;4485;4486 7041;7042;7043;7044;7045 7042 5 DFAIDIIK KPENEFAFNAEFKDKDFAIDIIKSTHDHWK NAEFKDKDFAIDIIKSTHDHWKALVTKKTN K D F I K S 1 0 0 2 0 0 0 0 0 3 0 1 0 1 0 0 0 0 0 0 0 0 8 0 933.51713 V9HWB5;Q15181 V9HWB5 214 221 HEL-S-66p;PPA1 Inorganic pyrophosphatase yes no 2 0.038104 54.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4884300 0 4884300 4884300 0 4884300 0 0 0 1667 1755 1717 4487 7046 7046 1 DFAYGETDPLIR LWPLRDLDTGEEVTRDFAYGETDPLIRKCM VTRDFAYGETDPLIRKCMLLPWAPTDMLDL R D F I R K 1 1 0 2 0 0 1 1 0 1 1 0 0 1 1 0 1 0 1 0 0 0 12 0 1395.667 A0A024R4U3;Q14166 A0A024R4U3 241 252 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 2 0.0020261 71.349 2 1.3254 1.3197 NaN 1 Median 1.3254 1.3197 NaN 1 0 Median NaN NaN NaN 0 0 Median 18420000 4161000 14259000 18420000 4161000 14259000 0 0 0 1668 161 1718 4488;4489 7047;7048;7049 7047 3 DFCSQSCLSTYELK KDVISAQFENTTTSKDFCSQSCLSTYELKK KDFCSQSCLSTYELKKKPIVTINTNSISTK K D F L K K 0 0 0 1 2 1 1 0 0 0 2 1 0 1 0 3 1 0 1 0 0 0 14 0 1736.7386 Q5VZL5;H7C1I7 Q5VZL5 415 428 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.024871 42.426 2 1.6152 1.3493 NaN 1 Median NaN NaN NaN 0 0 Median 1.6152 1.3493 NaN 1 0 Median 2800200 586280 2214000 0 0 0 2800200 586280 2214000 1669 1835 1719 4490;4491 7050;7051 7051 2 DFDGLVQVIIPQDESAASVK GWIQCRRQNTFLVLRDFDGLVQVIIPQDES VQVIIPQDESAASVKKILCEAPVESVVQVS R D F V K K 2 0 0 3 0 2 1 1 0 2 1 1 0 1 1 2 0 0 0 3 0 0 20 0 2130.0845 A8K4A8;A0A024R8Z9;Q6PI48 A8K4A8 85 104 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 7.5033E-06 67.275 2 1.8296 1.8412 13.936 2 Median 1.8296 1.8412 13.936 2 0 Median NaN NaN NaN 0 0 Median 12738000 4180100 8557700 12738000 4180100 8557700 0 0 0 1670 266 1720 4492;4493 7052;7053 7052 2 DFDREVEIR KTNSLRRRKLASFLKDFDREVEIRIKQIES LASFLKDFDREVEIRIKQIESDRQNLLKEV K D F I R I 0 2 0 2 0 0 2 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 9 1 1177.5728 Q53HL2;A8K7A2 Q53HL2 27 35 CDCA8 Borealin yes no 2;3 0.004206 105.2 3 0.92419 1.0249 6.7829 3 Plateau 0.92419 1.0249 6.7829 3 0 Plateau NaN NaN NaN 0 0 Median 405700000 208180000 197520000 405700000 208180000 197520000 0 0 0 1671 1789 1721 4494;4495;4496 7054;7055;7056;7057 7055 4 DFEASFIR KIRKIRARDDNPGLRDFEASFIRLLDKITN DDNPGLRDFEASFIRLLDKITNGSRIEINQ R D F I R L 1 1 0 1 0 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 8 0 983.47125 Q9Y2P8;Q5VYW8 Q9Y2P8 46 53 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 0.00068832 128.86 2 2 0.86322 0.95376 29.816 3 Median 0.8886 1.0022 7.0113 2 0 Median 0.72543 0.6023 NaN 1 0 Median 118670000 58733000 59933000 110560000 53979000 56577000 8109900 4754100 3355700 1672 2125 1722 4497;4498;4499;4500 7058;7059;7060;7061;7062;7063 7059 6 DFFQSYGNVVELR FIGNLPHEVDKSELKDFFQSYGNVVELRIN LKDFFQSYGNVVELRINSGGKLPNFGFVVF K D F L R I 0 1 1 1 0 1 1 1 0 0 1 0 0 2 0 1 0 0 1 2 0 0 13 0 1572.7573 Q6FI03;Q5U0Q1;Q13283;B7Z8K4;Q6ZP53;Q53HH4;Q32P45 Q6FI03 358 370 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2 0.00012689 79.659 2 1 1.9775 1.8281 8.0385 3 Median 1.8215 1.8247 11.367 2 0 Median 2.1722 1.8281 NaN 1 0 Median 21184000 8485400 12699000 18110000 7020900 11089000 3073800 1464500 1609300 1673 1710 1723 4501;4502;4503 7064;7065;7066;7067 7065 4 DFGLLVFVR SPAVLALQTSLVFSRDFGLLVFVRKSLNSI SLVFSRDFGLLVFVRKSLNSIEFRECREEI R D F V R K 0 1 0 1 0 0 0 1 0 0 2 0 0 2 0 0 0 0 0 2 0 0 9 0 1064.6019 P78527 P78527 62 70 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00030602 102.72 3 0.74977 0.74925 NaN 1 Median 0.74977 0.74925 NaN 1 0 Median NaN NaN NaN 0 0 Median 11178000 8956900 2221000 11178000 8956900 2221000 0 0 0 1674 1665 1724 4504;4505;4506 7068;7069;7070;7071 7071 4 DFGYVCETEFPAK LLTSLVEGEAVHLARDFGYVCETEFPAKAV ARDFGYVCETEFPAKAVAEFLNRQHSDPNE R D F A K A 1 0 0 1 1 0 2 1 0 0 0 1 0 2 1 0 1 0 1 1 0 0 13 0 1561.6759 Q96SH1;P05549;Q6VUC0 Q96SH1 305 317 TFAP2A;TFAP2E Transcription factor AP-2-alpha;Transcription factor AP-2-epsilon yes no 2 0.022534 45.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1675 1448 1725 4507 7072 7072 1 DFHLIQANK EECRNFEQGLKAYGKDFHLIQANKVRTRSV LKAYGKDFHLIQANKVRTRSVGECVAFYYM K D F N K V 1 0 1 1 0 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1084.5665 Q8N108 Q8N108 306 314 MIER1 Mesoderm induction early response protein 1 yes yes 2 8.3248E-08 141.39 2 1 1.2305 1.2878 11.124 2 Median 1.2305 1.2878 11.124 2 0 Median NaN NaN NaN 0 0 Median 53338000 18049000 35289000 51810000 16522000 35289000 1527600 1527600 0 1676 1903 1726 4508;4509;4510 7073;7074;7075 7073 3 DFHVDEQTTVK GKWEKPFEMKHTTERDFHVDEQTTVKVPMM TTERDFHVDEQTTVKVPMMNRLGMFDLHYC R D F V K V 0 0 0 2 0 1 1 0 1 0 0 1 0 1 0 0 2 0 0 2 0 0 11 0 1317.6201 CON__P34955 CON__P34955 229 239 yes yes 2 1.0595E-51 183.03 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19372000 19372000 0 19372000 19372000 0 0 0 0 + 1677 1164 1727 4511 7076 7076 1 DFIDLTLSK ______________________________ VVPSAKDFIDLTLSKTQRKTPTVIHKHYQI K D F S K T 0 0 0 2 0 0 0 0 0 1 2 1 0 1 0 1 1 0 0 0 0 0 9 0 1050.5597 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;O60747 Q8N4P8 15 23 GTPBP4 Nucleolar GTP-binding protein 1 yes no 1;2 0.0021437 81.642 4 2 1.2153 1.2931 5.4858 6 Median 1.1898 1.3661 6.0509 4 0 Linear 1.5954 1.2871 6.2998 2 0 Median 250740000 110420000 140320000 204650000 92684000 111970000 46085000 17738000 28346000 1678 1183 1728 4512;4513;4514;4515;4516;4517 7077;7078;7079;7080;7081;7082;7083;7084;7085;7086 7081 8 DFIEDYVDILR LHALCGKLLTLVSTRDFIEDYVDILRQAKQ VSTRDFIEDYVDILRQAKQEFRELKAEQHR R D F L R Q 0 1 0 3 0 0 1 0 0 2 1 0 0 1 0 0 0 0 1 1 0 0 11 0 1396.6874 D3DS96;Q9NRL2;Q59G54;A0A087WWN7 D3DS96 631 641 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 4.8303E-08 111.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9451700 0 9451700 9451700 0 9451700 0 0 0 1679 1187 1729 4518 7087 7087 1 DFIHDSLPPVLTDR GHFAPVDAVADQRAKDFIHDSLPPVLTDRE KDFIHDSLPPVLTDRERALSVYGLPIRWEA K D F D R E 0 1 0 3 0 0 0 0 1 1 2 0 0 1 2 1 1 0 0 1 0 0 14 0 1623.8257 A0A0A8K8C0;Q9H6W3 A0A0A8K8C0 504 517 URLC2;NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 yes no 3 0.00037766 55.196 2 0.89868 0.89371 NaN 1 Median 0.89868 0.89371 NaN 1 0 Median NaN NaN NaN 0 0 Median 10788000 7191400 3596600 10788000 7191400 3596600 0 0 0 1680 497 1730 4519;4520 7088;7089;7090 7089 3 DFIILSCVR EVEIASVDAFQGREKDFIILSCVRANEHQG FQGREKDFIILSCVRANEHQGIGFLNDPRR K D F V R A 0 1 0 1 1 0 0 0 0 2 1 0 0 1 0 1 0 0 0 1 0 0 9 0 1121.5903 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 835 843 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.041169 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1681 231 1731 4521 7091 7091 1 DFILPISDVR HLSLSHQPDKKGVPRDFILPISDVRASIGA KGVPRDFILPISDVRASIGAGFIYPLVGTM R D F V R A 0 1 0 2 0 0 0 0 0 2 1 0 0 1 1 1 0 0 0 1 0 0 10 0 1173.6394 A0A087WVM4;B7ZM99;Q6UB35;B2RD24;Q4VXM1;Q4VXM0;Q8WX68 A0A087WVM4 861 870 MTHFD1L;bA251O17.4 Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.0026779 67.993 2 1 1.6785 1.7018 9.2692 2 Median 1.6785 1.7018 9.2692 2 0 Median NaN NaN NaN 0 0 Median 21752000 6893300 14859000 20913000 6054300 14859000 838930 838930 0 1682 418 1732 4522;4523;4524 7092;7093;7094;7095;7096 7092 5 DFISVLR SMRKRAKLISTVSKKDFISVLRGMDGSTNE LISTVSKKDFISVLRGMDGSTNETASSRKK K D F L R G 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 7 0 848.4756 Q9Y3B9;A8K201 Q9Y3B9 209 215 RRP15 RRP15-like protein yes no 2 0.028171 72.355 1 0.60554 0.69765 NaN 1 Median 0.60554 0.69765 NaN 1 0 Median NaN NaN NaN 0 0 Median 54312000 31588000 22724000 54312000 31588000 22724000 0 0 0 1683 2134 1733 4525 7097 7097 1 DFKPGDLIFAK ______________________________ ______________________________ R D F A K M 1 0 0 2 0 0 0 1 0 1 1 2 0 2 1 0 0 0 0 0 0 0 11 1 1249.6707 O75475;Q05CM9;Q8N4N4 O75475 4 14 PSIP1 PC4 and SFRS1-interacting protein no no 2 0.0022814 79.659 1 1.3069 1.1105 NaN 1 Median NaN NaN NaN 0 0 Median 1.3069 1.1105 NaN 1 0 Median 39180000 17454000 21726000 0 0 0 39180000 17454000 21726000 1684 1405;1908 1734 4526 7098 7098 1 DFLAGGIAAAISK ______________________________ AKDFLAGGIAAAISKTAVAPIERVKLLLQV K D F S K T 4 0 0 1 0 0 0 2 0 2 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1232.6765 Q6I9V5;Q59EI9;P12236 Q6I9V5 11 23 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes no 2 0.0033135 64.439 2 1 0.79117 0.65624 NaN 1 Median NaN NaN NaN 0 0 Median 0.79117 0.65624 NaN 1 0 Median 4940500 936630 4003900 3363500 0 3363500 1577000 936630 640380 1685 1474 1735 4527;4528;4529 7099;7100;7101 7100 3 DFLDSLGFSTR LSSKGVKIWDANGSRDFLDSLGFSTREEGD NGSRDFLDSLGFSTREEGDLGPVYGFQWRH R D F T R E 0 1 0 2 0 0 0 1 0 0 2 0 0 2 0 2 1 0 0 0 0 0 11 0 1256.6037 Q53Y97;Q53FB7;A8K9A5;P04818 Q53Y97 116 126 TYMS Thymidylate synthase yes no 2 0.00022817 91.584 2 2.6806 2.7848 33.555 2 Median 2.6806 2.7848 33.555 2 0 Median NaN NaN NaN 0 0 Median 9917900 3091400 6826500 9917900 3091400 6826500 0 0 0 1686 782 1736 4530;4531 7102;7103 7103 2 DFLEAVNK GMFAIRARRKIATEKDFLEAVNKVIKSYAK RKIATEKDFLEAVNKVIKSYAKFSATPRYM K D F N K V 1 0 1 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 934.476 A0A140VK70;P35998;Q75L23 A0A140VK70 408 415 PSMC2 26S protease regulatory subunit 7 yes no 2 0.026448 57.281 2 3.0402 3.1178 NaN 1 Median 3.0402 3.1178 NaN 1 0 Median NaN NaN NaN 0 0 Median 19316000 2912700 16403000 19316000 2912700 16403000 0 0 0 1687 620 1737 4532;4533 7104;7105 7105 2 DFLEEANR DVAVFCLSLMGTNIRDFLEEANRVLKPGGL LMGTNIRDFLEEANRVLKPGGLLKVAEVSS R D F N R V 1 1 1 1 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 992.45632 O43159;E9PPP6 O43159 373 380 RRP8 Ribosomal RNA-processing protein 8 yes no 2 0.008243 79.469 1 1 1.0314 0.96084 27.536 2 Median 1.1644 1.1674 NaN 1 0 Median 0.91355 0.79084 NaN 1 0 Median 20587000 9183100 11404000 17990000 7892200 10098000 2596400 1291000 1305500 1688 1380 1738 4534;4535 7106;7107 7106 2 DFLIPIGK MYGVPFEFPPEAQSKDFLIPIGKAKIERQG PPEAQSKDFLIPIGKAKIERQGTHITVVSH K D F G K A 0 0 0 1 0 0 0 1 0 2 1 1 0 1 1 0 0 0 0 0 0 0 8 0 901.5273 P11177;F8WF02;C9J634;Q59G68 P11177 220 227 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 0.027969 53.554 1 1.4996 1.5354 NaN 1 Median 1.4996 1.5354 NaN 1 0 Median NaN NaN NaN 0 0 Median 9389700 2862300 6527400 9389700 2862300 6527400 0 0 0 1689 1468 1739 4536 7108 7108 1 DFLLKPELLR DIKGSYVSIHSSGFRDFLLKPELLRAIVDC SSGFRDFLLKPELLRAIVDCGFEHPSEVQH R D F L R A 0 1 0 1 0 0 1 0 0 0 4 1 0 1 1 0 0 0 0 0 0 0 10 1 1242.7336 A0A024RCM3;Q13838;Q5STU3;F6WLT2;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;F6QYI9;A0A0G2JJL7;F6R6M7;K7EN69;Q7KYK3;K7ENP6;A0A0G2JHN7;K7EL56;K7EIL8;F6U6E2;F6S2B7;F6SXL5;B4DH55;B4DF34;O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3 O00148 48 57 hCG_2005638;DDX39B;DDX39A;BAT1;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2;3 0.0059189 76.228 4 1.2973 1.5572 13.085 3 Median 1.2973 1.5572 13.085 3 0 Median NaN NaN NaN 0 0 Median 209150000 99340000 109810000 209150000 99340000 109810000 0 0 0 1690 1359;362 1740 4537;4538;4539;4540 7109;7110;7111;7112;7113;7114 7110 6 DFLLNYPFSTSVK RQIYGYDSRFSIFGKDFLLNYPFSTSVKLS GKDFLLNYPFSTSVKLSTGCTGTLVAEKHV K D F V K L 0 0 1 1 0 0 0 0 0 0 2 1 0 2 1 2 1 0 1 1 0 0 13 0 1529.7766 B3KQQ9;O95084 B3KQQ9 143 155 PRSS23 Serine protease 23 yes no 2 0.045069 40.715 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4225600 0 4225600 4225600 0 4225600 0 0 0 1691 929 1741 4541 7115 7115 1 DFLLTAR ______________________________ PRKIEEIKDFLLTARRKDAKSVKIKKNKDN K D F A R R 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 7 0 834.45995 A0A024R8P8;P63173;J3KT73;J3QL01;J3KSP2 A0A024R8P8 10 16 RPL38 60S ribosomal protein L38 yes no 2 0.01383 101.72 1 1 1.0899 1.0502 5.215 2 Median 0.93338 1.0122 NaN 1 0 Median 1.2726 1.0896 NaN 1 0 Median 55839000 27687000 28152000 49818000 25116000 24703000 6020900 2571100 3449800 1692 253 1742 4542;4543 7116;7117;7118 7117 3 DFLMSGLPDLLK SEKSQDCDVQCKAKRDFLMSGLPDLLKRQI AKRDFLMSGLPDLLKRQIAKKAAALDVYNA R D F L K R 0 0 0 2 0 0 0 1 0 0 4 1 1 1 1 1 0 0 0 0 0 0 12 0 1347.7108 Q96QE3;H0UIC2;A0A075B754 Q96QE3 836 847 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.00057234 73.499 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4324500 0 4324500 4324500 0 4324500 0 0 0 1693 1984 1743 4544;4545 7119;7120;7121;7122 7120 1816 4 DFLQEVCLRPSADPIFEPR GIREKALHKHLNKHRDFLQEVCLRPSADPI EVCLRPSADPIFEPRQLPAFQEGIMSWSPK R D F P R Q 1 2 0 2 1 1 2 0 0 1 2 0 0 2 3 1 0 0 0 1 0 0 19 1 2288.126 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9;H0YHL2 J3QK86 1442 1460 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 3 1.5904E-05 53.779 1 0.84046 0.8694 NaN 1 Median 0.84046 0.8694 NaN 1 0 Median NaN NaN NaN 0 0 Median 12630000 6173800 6455800 12630000 6173800 6455800 0 0 0 1694 1260 1744 4546 7123 7123 1 DFLQGSSCIAGIYNETTK ESGQISYDEVGERIKDFLQGSSCIAGIYNE QGSSCIAGIYNETTKQKLGIYEAMKIGLVR K D F T K Q 1 0 1 1 1 1 1 2 0 2 1 1 0 1 0 2 2 0 1 0 0 0 18 0 2002.9306 P15924;Q4LE79 P15924 2252 2269 DSP;DSP variant protein Desmoplakin yes no 2 0.0077419 42.209 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8943900 8943900 0 7457900 7457900 0 1486000 1486000 0 1695 1486 1745 4547;4548 7124;7125 7124 2 DFMIQGGDPTGTGR RRGYYNGTKFHRIIKDFMIQGGDPTGTGRG KDFMIQGGDPTGTGRGGASIYGKQFEDELH K D F G R G 0 1 0 2 0 1 0 4 0 1 0 0 1 1 1 0 2 0 0 0 0 0 14 0 1450.6511 A0A024RCX8;Q9Y3C6 A0A024RCX8 59 72 PPIL1 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase-like 1 yes no 2 0.021928 40.715 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1696 374 1746 4549 7126 7126 277 1 DFMYVSQDPK EKALAMGYKPKAYLRDFMYVSQDPKDQLLL KAYLRDFMYVSQDPKDQLLLGPTYATPKVL R D F P K D 0 0 0 2 0 1 0 0 0 0 0 1 1 1 1 1 0 0 1 1 0 0 10 0 1228.5434 P55084;B4DY96;B5MD38;F5GZQ3;B4DDC9 P55084 339 348 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.0093909 53.775 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9966900 0 9966900 9966900 0 9966900 0 0 0 1697 1615 1747 4550;4551 7127;7128 7127 1403 2 DFNHINVELSLLGK GRTVIVKGPRGTLRRDFNHINVELSLLGKK RDFNHINVELSLLGKKKKRLRVDKWWGNRK R D F G K K 0 0 2 1 0 0 1 1 1 1 3 1 0 1 0 1 0 0 0 1 0 0 14 0 1597.8464 Q53Z07;P32969;E7ESE0;D6RAN4;H0Y9V9;B4E1M5;B4DLV8 Q53Z07 37 50 RPL9 60S ribosomal protein L9 yes no 2;3 2.7997E-21 145.71 4 3 0.94604 0.97927 9.3902 7 Median 0.94802 1.0892 4.9483 4 0 Linear 1.0664 0.92273 4.6158 3 0 Plateau 735670000 368590000 367080000 520480000 264530000 255950000 215200000 104070000 111130000 1698 1537 1748 4552;4553;4554;4555;4556;4557;4558 7129;7130;7131;7132;7133;7134;7135;7136;7137;7138;7139;7140;7141;7142;7143 7132 15 DFNVPLSISR LEGPAPWGFRLQGGKDFNVPLSISRLTPGG LQGGKDFNVPLSISRLTPGGKAAQAGVAVG K D F S R L 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 2 0 0 0 1 0 0 10 0 1146.6033 Q9NR12;D6RAN1;D6RF83;H7BYK4;D6RH06 Q9NR12 23 32 PDLIM7 PDZ and LIM domain protein 7 yes no 2 0.009241 54.982 1 1.5833 1.5991 NaN 1 Median 1.5833 1.5991 NaN 1 0 Median NaN NaN NaN 0 0 Median 10071000 4428300 5643100 10071000 4428300 5643100 0 0 0 1699 2064 1749 4559 7144 7144 1 DFPLSGYVELR RILTDYGFEGHPFRKDFPLSGYVELRYDDE PFRKDFPLSGYVELRYDDEVKRVVAEPVEL K D F L R Y 0 1 0 1 0 0 1 1 0 0 2 0 0 1 1 1 0 0 1 1 0 0 11 0 1294.6558 Q9UF24;O75489;Q53FM7 Q9UF24 127 137 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 2 0.029801 39.001 1 1.6551 1.6929 NaN 1 Median 1.6551 1.6929 NaN 1 0 Median NaN NaN NaN 0 0 Median 5102000 2093000 3009000 5102000 2093000 3009000 0 0 0 1700 1406 1750 4560 7145 7145 1 DFQAISDVIGNK EEQLLAVQAIRKYGRDFQAISDVIGNKSVV YGRDFQAISDVIGNKSVVQVKNFFVNYRRR R D F N K S 1 0 1 2 0 1 0 1 0 2 0 1 0 1 0 1 0 0 0 1 0 0 12 0 1305.6565 Q9UKL0 Q9UKL0 404 415 RCOR1 REST corepressor 1 yes yes 2 0.0012048 80.706 3 1 1.3196 1.1653 25.483 3 Median 1.0374 1.0641 35.267 2 0 Median 1.4051 1.1653 NaN 1 0 Median 33008000 10900000 22108000 31227000 10009000 21218000 1781100 890740 890380 1701 2106 1751 4561;4562;4563;4564 7146;7147;7148;7149;7150 7148 5 DFQQALYELSYHVIK RILSENKSHDSSTYRDFQQALYELSYHVIK DFQQALYELSYHVIKGNLKHEQASNVLSDI R D F I K G 1 0 0 1 0 2 1 0 1 1 2 1 0 1 0 1 0 0 2 1 0 0 15 0 1852.9359 Q8NI27;F2Z2V2 Q8NI27 44 58 THOC2 THO complex subunit 2 yes no 3 0.0099921 26.435 1 1.2165 1.2717 NaN 1 Median 1.2165 1.2717 NaN 1 0 Median NaN NaN NaN 0 0 Median 3961700 1566000 2395700 3961700 1566000 2395700 0 0 0 1702 1929 1752 4565 7151 7151 1 DFQSGQHVIVR TDELSLTNCAVVNEKDFQSGQHVIVRTSPN VNEKDFQSGQHVIVRTSPNHRYTFTLKTHP K D F V R T 0 1 0 1 0 2 0 1 1 1 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1284.6575 I3L0N3;B7Z5J7;P46459;B4DGR3;I3L0L3;I3L338;I3L4Q9 I3L0N3 23 33 NSF Vesicle-fusing ATPase yes no 2 1.2345E-11 119.53 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10727000 0 10727000 10727000 0 10727000 0 0 0 1703 1096 1753 4566 7152 7152 1 DFSAPTLEDHFNK RGAFFMDEDEEVYKRDFSAPTLEDHFNKTI KRDFSAPTLEDHFNKTILPKVMQVKNFGRS R D F N K T 1 0 1 2 0 0 1 0 1 0 1 1 0 2 1 1 1 0 0 0 0 0 13 0 1519.6943 P55081 P55081 359 371 MFAP1 Microfibrillar-associated protein 1 yes yes 2 0.0055988 57.174 2 1.356 1.3758 NaN 1 Median 1.356 1.3758 NaN 1 0 Median NaN NaN NaN 0 0 Median 6568500 3266100 3302400 6568500 3266100 3302400 0 0 0 1704 1614 1754 4567;4568 7153;7154 7154 1 DFSASYFSGEQEVTPSR PSHLSSNSQRTPIRRDFSASYFSGEQEVTP SASYFSGEQEVTPSRSTLQIGKRDANSSFF R D F S R S 1 1 0 1 0 1 2 1 0 0 0 0 0 2 1 4 1 0 1 1 0 0 17 0 1905.8381 P49454 P49454 240 256 CENPF Centromere protein F yes yes 2 0.00013319 79.492 3 1 1.6856 1.464 NaN 1 Median NaN NaN NaN 0 0 Median 1.6856 1.464 NaN 1 0 Median 2284200 1195200 1089000 0 0 0 2284200 1195200 1089000 1705 1581 1755 4569;4570;4571;4572 7155;7156;7157;7158 7156 4 DFSDITKK LVLAPTRELANQVSKDFSDITKKLSVACFY LANQVSKDFSDITKKLSVACFYGGTPYGGQ K D F K K L 0 0 0 2 0 0 0 0 0 1 0 2 0 1 0 1 1 0 0 0 0 0 8 1 952.48656 Q9NR30 Q9NR30 279 286 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.045786 53.968 2 1.2823 1.1072 1.2191 2 Median NaN NaN NaN 0 0 Median 1.2823 1.1072 1.2191 2 0 Median 7310500 3181800 4128600 0 0 0 7310500 3181800 4128600 1706 2065 1756 4573;4574 7159;7160 7160 2 DFSNSPLHR VQLPREGQEDQGLTKDFSNSPLHRFKKPGS DQGLTKDFSNSPLHRFKKPGSKNFQNIFPP K D F H R F 0 1 1 1 0 0 0 0 1 0 1 0 0 1 1 2 0 0 0 0 0 0 9 0 1071.5098 A0A024R163;O95758 A0A024R163 450 458 ROD1;PTBP3 Polypyrimidine tract-binding protein 3 yes no 2 7.1625E-06 113.26 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1707 71 1757 4575 7161 7161 1 DFSYNYFGFK LANKDRLNSAIIYDRDFSYNYFGFKTLERS IIYDRDFSYNYFGFKTLERSYLLKINGKVA R D F F K T 0 0 1 1 0 0 0 1 0 0 0 1 0 3 0 1 0 0 2 0 0 0 10 0 1286.5608 B4DNN4;Q53GZ5;P23921;B4E0I8 B4DNN4 110 119 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.0019093 71.501 2 3.8394 3.9926 5.6155 2 Median 3.8394 3.9926 5.6155 2 0 Median NaN NaN NaN 0 0 Median 23524000 6419700 17104000 23524000 6419700 17104000 0 0 0 1708 1014 1758 4576;4577 7162;7163;7164 7164 3 DFTATFGPLDSLNTR VLSAAMYPDVFAHFKDFTATFGPLDSLNTR DFTATFGPLDSLNTRLFLQGPKIAEEFEVE K D F T R L 1 1 1 2 0 0 0 1 0 0 2 0 0 2 1 1 3 0 0 0 0 0 15 0 1653.7999 A0A024R5C5;P11498;E9PS68 A0A024R5C5 1022 1036 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 0.00022046 66.262 2 1 1.8454 1.8659 54.424 3 Plateau 1.826 1.8431 8.0906 2 0 Median 0.81927 0.72183 NaN 1 0 Median 20810000 6914100 13896000 19393000 6320100 13073000 1416400 593950 822470 1709 176 1759 4578;4579;4580 7165;7166;7167 7165 3 DFTDIQQDFLPWK SEANLFEEALEKYGKDFTDIQQDFLPWKSL GKDFTDIQQDFLPWKSLTSIIEYYYMWKTT K D F W K S 0 0 0 3 0 2 0 0 0 1 1 1 0 2 1 0 1 1 0 0 0 0 13 0 1651.7882 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7 E7ESY4 306 318 MTA1 Metastasis-associated protein MTA1 yes no 2 2.3839E-13 127.76 2 0.66042 0.67337 0.17259 2 Median 0.66042 0.67337 0.17259 2 0 Median NaN NaN NaN 0 0 Median 25939000 15895000 10044000 25939000 15895000 10044000 0 0 0 1710 1223 1760 4581;4582 7168;7169;7170;7171 7169 4 DFTDLIVINEDR RGLALKKIIPQCIARDFTDLIVINEDRKTP IARDFTDLIVINEDRKTPNGLILSHLPNGP R D F D R K 0 1 1 3 0 0 1 0 0 2 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1448.7147 Q9H9Y2 Q9H9Y2 191 202 RPF1 Ribosome production factor 1 yes yes 2 7.0704E-06 109.42 2 2 1.0305 0.98237 8.8735 4 Median 1.0325 1.0381 3.9863 2 0 Median 1.0299 0.91043 6.9413 2 0 Median 23671000 12427000 11244000 19265000 10421000 8844000 4406200 2006300 2399900 1711 2048 1761 4583;4584;4585;4586 7172;7173;7174;7175;7176;7177;7178;7179 7173 8 DFTDLIVINEDRK RGLALKKIIPQCIARDFTDLIVINEDRKTP ARDFTDLIVINEDRKTPNGLILSHLPNGPT R D F R K T 0 1 1 3 0 0 1 0 0 2 1 1 0 1 0 0 1 0 0 1 0 0 13 1 1576.8097 Q9H9Y2 Q9H9Y2 191 203 RPF1 Ribosome production factor 1 yes yes 2 3.5552E-13 128.88 2 2 0.92212 0.93267 33.012 4 Median 1.0337 1.2254 1.2727 2 0 Median 0.80813 0.69317 4.6341 2 0 Median 152410000 73070000 79343000 117290000 54456000 62835000 35122000 18614000 16508000 1712 2048 1762 4587;4588;4589;4590 7180;7181;7182;7183;7184;7185;7186;7187 7185 8 DFTVASPAEFVTR LVKQGRDRKKIDSQRDFTVASPAEFVTRFG QRDFTVASPAEFVTRFGGNKVIEKVLIANN R D F T R F 2 1 0 1 0 0 1 0 0 0 0 0 0 2 1 1 2 0 0 2 0 0 13 0 1438.7092 A0A024R0Y2;B2ZZ90;Q13085;A2NX49;O00763;A0A087WVR6;A0A087X0W4;A0A0C4DGT1;S4R3S7 A0A024R0Y2 21 33 hCG_30204;ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 2 0.0038515 63.624 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2427600 2427600 0 2427600 2427600 0 0 0 0 1713 60 1763 4591 7188 7188 1 DFTVSAMHGDMDQK TRRKVDWLTEKMHARDFTVSAMHGDMDQKE RDFTVSAMHGDMDQKERDVIMREFRSGSSR R D F Q K E 1 0 0 3 0 1 0 1 1 0 0 1 2 1 0 1 1 0 0 1 0 0 14 0 1580.6599 A8K7F6;P60842;A8K088;J3KT12;B4DNH2;J3KSZ0;J3QL52 A8K7F6 296 309 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 1.2E-29 157.03 3 4.2148 4.7252 5.4167 2 Median 4.2148 4.7252 5.4167 2 0 Median NaN NaN NaN 0 0 Median 171410000 41813000 129600000 171410000 41813000 129600000 0 0 0 1714 770 1764 4592;4593;4594 7189;7190;7191;7192 7191 596;597 4 DFTVSGNLLFIR SRDAAPLPRPGAVLKDFTVSGNLLFIRLTA VLKDFTVSGNLLFIRLTAADHRQLQLSISS K D F I R L 0 1 1 1 0 0 0 1 0 1 2 0 0 2 0 1 1 0 0 1 0 0 12 0 1380.7402 A4FUI5 A4FUI5 67 78 CTAG2 yes yes 2 0.00014575 93.111 2 1.5279 1.5219 NaN 1 Median 1.5279 1.5219 NaN 1 0 Median NaN NaN NaN 0 0 Median 14899000 2907800 11991000 14899000 2907800 11991000 0 0 0 1715 671 1765 4595;4596 7193;7194;7195 7193 3 DFVAEPMGEK ______________________________ SQKHRDFVAEPMGEKPVGSLAGIGEVLGKK R D F E K P 1 0 0 1 0 0 2 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 10 0 1121.5063 A0A024R5H0;O75531;E9PJJ8 A0A024R5H0 9 18 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 0.0001058 93.467 2 2 0.79057 0.77853 53.267 4 Median 1.0259 1.2143 1.672 2 0 Median 0.59951 0.48373 6.1048 2 0 Median 1386800000 673280000 713470000 1366500000 660540000 706000000 20219000 12746000 7472600 1716 181 1766 4597;4598;4599;4600 7196;7197;7198;7199;7200;7201;7202 7198 147 7 DFVAEPMGEKPVGSLAGIGEVLGK ______________________________ KPVGSLAGIGEVLGKKLEERGFDKAYVVLG R D F G K K 2 0 0 1 0 0 3 5 0 1 2 2 1 1 2 1 0 0 0 3 0 0 24 1 2399.2406 A0A024R5H0;O75531 A0A024R5H0 9 32 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 3 1.1553E-12 73.036 2 0.59359 0.5048 4.4144 2 Median NaN NaN NaN 0 0 Median 0.59359 0.5048 4.4144 2 0 Median 52242000 28934000 23308000 0 0 0 52242000 28934000 23308000 1717 181 1767 4601;4602 7203;7204;7205;7206;7207 7207 147 5 DFVAPHLAQPTGSQSPPPGSK AEVLLDSDGEFLPVRDFVAPHLAQPTGSQS LAQPTGSQSPPPGSKRLAFLRWEFPNFNSR R D F S K R 2 0 0 1 0 2 0 2 1 0 1 1 0 1 5 3 1 0 0 1 0 0 21 0 2117.0542 D3DVL7;B4DU42;Q969Z0;B3KRS4;B3KMT3;B3KM73;H7C4R5 D3DVL7 485 505 TBRG4 Protein TBRG4 yes no 3 1.106E-09 85.932 2 1.8507 1.9165 1.1987 2 Median 1.8507 1.9165 1.1987 2 0 Median NaN NaN NaN 0 0 Median 33985000 13918000 20066000 33985000 13918000 20066000 0 0 0 1718 1036 1768 4603;4604 7208;7209;7210;7211;7212;7213 7208 6 DFVASIDATYAK NNAFEELVAFQRALKDFVASIDATYAKQYE ALKDFVASIDATYAKQYEEFYVGLEGSFGS K D F A K Q 3 0 0 2 0 0 0 0 0 1 0 1 0 1 0 1 1 0 1 1 0 0 12 0 1299.6347 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 82 93 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.00021727 82.261 3 2 1.0029 0.79901 50.944 3 Median 1.4577 1.6393 NaN 1 0 Median 0.88745 0.69944 18.823 2 0 Median 70735000 22567000 48168000 65041000 19911000 45130000 5694400 2656700 3037700 1719 568 1769 4605;4606;4607;4608;4609 7214;7215;7216;7217;7218;7219;7220 7216 7 DFVNYLVR GNSTNKKDAQSNAARDFVNYLVRINEIKSE AQSNAARDFVNYLVRINEIKSEEVPAFGVA R D F V R I 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 2 0 0 8 0 1024.5342 Q08211;Q58F26;Q6PJK6 Q08211 64 71 DHX9 ATP-dependent RNA helicase A yes no 2 0.0078606 81.119 2 2 1.41 1.4245 4.7269 4 Linear 1.2367 1.3938 5.2815 2 0 Median 1.5989 1.3099 0.74734 2 0 Median 248490000 107490000 141000000 225910000 98991000 126920000 22575000 8499300 14075000 1720 1691 1770 4610;4611;4612;4613 7221;7222;7223;7224;7225;7226;7227 7223 7 DFVQVMR RVEGMTELYFQLKSKDFVQVMRHRDDERQK LYFQLKSKDFVQVMRHRDDERQKVCLDIIY K D F M R H 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 2 0 0 7 0 893.44292 P78527 P78527 2419 2425 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.027912 51.572 1 0.79461 0.81832 NaN 1 Median 0.79461 0.81832 NaN 1 0 Median NaN NaN NaN 0 0 Median 24717000 13433000 11284000 24717000 13433000 11284000 0 0 0 1721 1665 1771 4614 7228 7228 1443 1 DFVTDADAEVLEHSGK TSSSNPSSPAPDWYKDFVTDADAEVLEHSG FVTDADAEVLEHSGKMVLLFEILRMAEEIG K D F G K M 2 0 0 3 0 0 2 1 1 0 1 1 0 1 0 1 1 0 0 2 0 0 16 0 1731.7952 A4LAA3;P46100;B4DHH8;B4DLE1 A4LAA3 2004 2019 ATRX Transcriptional regulator ATRX yes no 2 1.4077E-06 95.651 2 1 1.7316 1.3556 NaN 1 Median NaN NaN NaN 0 0 Median 1.7316 1.3556 NaN 1 0 Median 9292000 1949100 7342900 5427300 0 5427300 3864700 1949100 1915600 1722 672 1772 4615;4616;4617 7229;7230;7231;7232;7233 7233 5 DFWGDDYK VCRNCECLSCIDCGKDFWGDDYKNHVKCIS SCIDCGKDFWGDDYKNHVKCISEDQKYGGK K D F Y K N 0 0 0 3 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 0 0 0 8 0 1044.4189 Q9NX58;A8K3Y5;D6RDJ1 Q9NX58 39 46 LYAR Cell growth-regulating nucleolar protein yes no 2 0.051374 43.246 2 1.2042 0.97454 3.1713 2 Median NaN NaN NaN 0 0 Median 1.2042 0.97454 3.1713 2 0 Median 13583000 5958100 7624800 0 0 0 13583000 5958100 7624800 1723 2079 1773 4618;4619 7234;7235;7236 7234 3 DFYAAHPSADAANGSNEDRGEVADEDK KLVPGLFKNEMKRRRDFYAAHPSADAANGS NGSNEDRGEVADEDKRIITDDEIISLSIEF R D F D K R 6 1 2 5 0 0 3 2 1 0 0 1 0 1 1 2 0 0 1 1 0 0 27 1 2850.1965 Q5T8Z4;R4GMX3;P35226 Q5T8Z4 96 122 BMI1;COMMD3-BMI1 Polycomb complex protein BMI-1 yes no 3 0.0045709 33.414 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1724 1540 1774 4620 7237 7237 1 DFYFSVK KEQIGKVDEIFGQLRDFYFSVKLSENMKAS DEIFGQLRDFYFSVKLSENMKASSFKKLQK R D F V K L 0 0 0 1 0 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 7 0 904.43307 A0A024RDJ3;Q9NY12 A0A024RDJ3 122 128 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2 0.029227 70.67 2 0.82013 0.92883 8.9027 2 Median 0.82013 0.92883 8.9027 2 0 Median NaN NaN NaN 0 0 Median 260120000 142140000 117980000 260120000 142140000 117980000 0 0 0 1725 387 1775 4621;4622 7238;7239;7240 7240 3 DFYVAFQDLPTR LKTFVKDRKEIPLAKDFYVAFQDLPTRHKI LAKDFYVAFQDLPTRHKIRELTSSRIGLLT K D F T R H 1 1 0 2 0 1 0 0 0 0 1 0 0 2 1 0 1 0 1 1 0 0 12 0 1470.7143 Q14566;Q4ZG57 Q14566 109 120 MCM6 DNA replication licensing factor MCM6 yes no 2 0.00023548 85.958 1 2 1.1459 0.99306 38.51 3 Median 1.89 1.9046 NaN 1 0 Median 1.1355 0.97803 2.1557 2 0 Median 15989000 6486400 9502900 10613000 3994400 6618400 5376400 2491900 2884500 1726 1734 1776 4623;4624;4625 7241;7242;7243;7244;7245;7246 7242 6 DGALTQLNVAFSR DEDYLYREELAQFHRDGALTQLNVAFSREQ HRDGALTQLNVAFSREQSHKVYVQHLLKQD R D G S R E 2 1 1 1 0 1 0 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 13 0 1390.7205 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;E7EMD0;B4DDH3;B4DKM8;B4E305 B2R6E5 588 600 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 4.6889E-09 112.15 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9149400 2992200 6157200 5162000 0 5162000 3987500 2992200 995280 1727 719 1777 4626;4627;4628 7247;7248;7249;7250 7247 4 DGANIVIAAK ASRGIGKAIALKAAKDGANIVIAAKTAQPH LKAAKDGANIVIAAKTAQPHPKLLGTIYTA K D G A K T 3 0 1 1 0 0 0 1 0 2 0 1 0 0 0 0 0 0 0 1 0 0 10 0 970.54475 B2R923;A0A024R159;Q6YN16 B2R923 33 42 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 0.00022829 93.143 1 2.4144 2.3809 NaN 1 Median 2.4144 2.3809 NaN 1 0 Median NaN NaN NaN 0 0 Median 24762000 7830600 16932000 24762000 7830600 16932000 0 0 0 1728 70 1778 4629 7251 7251 1 DGDSVMVLPTIPEEEAK QLTAEKRVATPVDWKDGDSVMVLPTIPEEE DSVMVLPTIPEEEAKKLFPKGVFTKELPSG K D G A K K 1 0 0 2 0 0 3 1 0 1 1 1 1 0 2 1 1 0 0 2 0 0 17 0 1828.8764 V9HWC7;P30041 V9HWC7 183 199 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 0.00022023 63.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1729 1527 1779 4630 7252 7252 1293 1 DGEDQTQDTELVETRPAGDGTFQK ALSFYPAEITLTWQRDGEDQTQDTELVETR ELVETRPAGDGTFQK_______________ R D G Q K - 1 1 0 4 0 3 3 3 0 0 1 1 0 1 1 0 4 0 0 1 0 0 24 1 2636.1838 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U3N9E1 219 242 HLA-A;HLA-C;HLA;HLA-Cw;HLA-A*31;MHC class I HLA-A;HLA-A*0226;HLA-A*33;HLA-A*02;HLA-DQB1;HLA-B;HLA A;HLA-A24AK;HLA-A*0201V3;Cw;HLA-H HLA class I histocompatibility antigen, A-29 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-43 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-26 alpha chain;HLA class I histocompatibility antigen, A-23 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-24 alpha chain;HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain;Beta-2-microglobulin;Putative HLA class I histocompatibility antigen, alpha chain H;HLA class I histocompatibility antigen, B-73 alpha chain;HLA class I histocompatibility antigen, A-80 alpha chain;HLA class I histocompatibility antigen, Cw-2 alpha chain no no 3 7.2972E-13 75.646 2 2 0.96551 0.99041 7.5593 4 Median 0.88272 1.024 2.6938 2 0 Median 1.0953 0.92446 7.7223 2 0 Median 79082000 39972000 39110000 63254000 33049000 30205000 15828000 6923500 8904100 1730 395 1780 4631;4632;4633;4634 7253;7254;7255;7256 7254 4 DGEQHEDLNEVAK WNIFNRMPIARKIIKDGEQHEDLNEVAKLF IKDGEQHEDLNEVAKLFNIHED________ K D G A K L 1 0 1 2 0 1 3 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1482.6587 O95831;A0A140VK04;E9PMA0 O95831 594 606 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2;3 1.1361E-162 259.75 3 1 1.8439 1.7226 45.355 2 Median 2.1566 2.3739 NaN 1 0 Median 1.5765 1.25 NaN 1 0 Median 72349000 33008000 39341000 68023000 31273000 36750000 4325500 1735100 2590300 1731 1431 1781 4635;4636;4637;4638 7257;7258;7259;7260;7261;7262 7259 6 DGEVDATASSIPELER EEESIAAVPGRRGRRDGEVDATASSIPELE GEVDATASSIPELERQIEKLSKRQLFFRKK R D G E R Q 2 1 0 2 0 0 3 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 16 0 1687.7901 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1041 1056 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 1.5487E-08 103.88 2 2 1.3816 1.2692 33.974 4 Median 0.9042 0.94097 4.717 2 0 Median 1.9971 1.6904 2.9379 2 0 Median 67875000 32668000 35207000 53247000 28117000 25130000 14628000 4551100 10077000 1732 1260 1782 4639;4640;4641;4642 7263;7264;7265;7266;7267;7268;7269;7270;7271 7267 9 DGFHIR ARICANKYMVKSCGKDGFHIRVRLHPFHVI KYMVKSCGKDGFHIRVRLHPFHVIRINKML K D G I R V 0 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 6 0 743.37147 F8W7C6;A0A087WV22;X1WI28;X5D2T3;P27635;B8A6G2;X5D2W5;A6QRI9 X1WI28 83 88 RPL10 60S ribosomal protein L10 no no 2 0.034228 112.95 1 0.89926 1.0688 NaN 1 Median 0.89926 1.0688 NaN 1 0 Median NaN NaN NaN 0 0 Median 1101300000 600820000 500490000 1101300000 600820000 500490000 0 0 0 1733 1524;1266 1783 4643 7272 7272 1 DGGAAAAGPRPEQEPR ECARRSQPERCRPRRDGGAAAAGPRPEQEP GGAAAAGPRPEQEPRAAPAEPDFIFRAPIK R D G P R A 4 2 0 1 0 1 2 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 16 1 1577.7546 Q8NCN4 Q8NCN4 146 161 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 3 7.1267E-05 58.83 1 0.76977 0.75514 NaN 1 Median 0.76977 0.75514 NaN 1 0 Median NaN NaN NaN 0 0 Median 3753100 2678300 1074800 3753100 2678300 1074800 0 0 0 1734 1923 1784 4644 7273;7274 7273 2 DGGILPR VTNSGKTHTIQGTIKDGGILPRSLALIFNS HTIQGTIKDGGILPRSLALIFNSLQGQLHP K D G P R S 0 1 0 1 0 0 0 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 7 0 726.40244 O95235;D6RBN1 O95235 176 182 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 0.016949 102.98 2 2 1.2274 1.0479 16.906 3 Median 0.74017 0.80943 NaN 1 0 Median 1.283 1.0798 4.2406 2 0 Median 59363000 40450000 18913000 48229000 35475000 12753000 11134000 4974400 6159400 1735 1421 1785 4645;4646;4647;4648 7275;7276;7277;7278 7275 4 DGHFNPEVVK FRFGNPLHIAQKLFRDGHFNPEVVKYRQLC QKLFRDGHFNPEVVKYRQLCFKSQYKRYLN R D G V K Y 0 0 1 1 0 0 1 1 1 0 0 1 0 1 1 0 0 0 0 2 0 0 10 0 1140.5564 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1;E9PJU3;E9PJG2 A0A024R3K9 113 122 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.032178 51.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1786700 0 1786700 0 0 0 1786700 0 1786700 1736 135 1786 4649 7279 7279 1 DGIDDESYEAIFK GAGKGKYYAVNYPLRDGIDDESYEAIFKPV LRDGIDDESYEAIFKPVMSKVMEMFQPSAV R D G F K P 1 0 0 3 0 0 2 1 0 2 0 1 0 1 0 1 0 0 1 0 0 0 13 0 1500.662 Q6IT96;Q13547;B5BU61;B4DRG0 Q6IT96 230 242 HDAC1 Histone deacetylase;Histone deacetylase 1 yes no 2 0.00013091 89.171 2 0.7532 0.75158 1.3095 2 Median 0.7532 0.75158 1.3095 2 0 Median NaN NaN NaN 0 0 Median 48190000 25718000 22472000 48190000 25718000 22472000 0 0 0 1737 1715 1787 4650;4651 7280;7281;7282;7283;7284 7284 5 DGIDDESYEAIFKPVMSK GAGKGKYYAVNYPLRDGIDDESYEAIFKPV DDESYEAIFKPVMSKVMEMFQPSAVVLQCG R D G S K V 1 0 0 3 0 0 2 1 0 2 0 2 1 1 1 2 0 0 1 1 0 0 18 1 2042.9507 Q6IT96;Q13547;B5BU61;B4DRG0 Q6IT96 230 247 HDAC1 Histone deacetylase;Histone deacetylase 1 yes no 3 0.0039633 29.444 2 2.276 2.0156 16.477 2 Median NaN NaN NaN 0 0 Median 2.276 2.0156 16.477 2 0 Median 3767900 976580 2791300 0 0 0 3767900 976580 2791300 1738 1715 1788 4652;4653 7285;7286 7285 2 DGIDDESYGQIFKPIISK GAGKGKYYAVNFPMRDGIDDESYGQIFKPI DDESYGQIFKPIISKVMEMYQPSAVVLQCG R D G S K V 0 0 0 3 0 1 1 2 0 4 0 2 0 1 1 2 0 0 1 0 0 0 18 1 2024.0102 Q92769;B3KUJ5 Q92769 231 248 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 2;3 6.9628E-06 76.155 2 3 1.5631 1.3287 23.284 5 Median 0.81883 0.95869 3.3068 2 0 Median 1.6372 1.3916 9.8216 3 0 Median 287340000 151950000 135390000 214160000 124070000 90083000 73182000 27872000 45310000 1739 1952 1789 4654;4655;4656;4657;4658 7287;7288;7289;7290;7291;7292;7293;7294;7295;7296 7288 10 DGIEFAFK LDQLKTREAIAMLHKDGIEFAFKEPNPQGE AIAMLHKDGIEFAFKEPNPQGESHPPLNLA K D G F K E 1 0 0 1 0 0 1 1 0 1 0 1 0 2 0 0 0 0 0 0 0 0 8 0 925.45453 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;Q6AI02;B4DQ46;Q4LE48;Q8WVM7;Q68DW7;B4E2Q7 B2R8Y6 907 914 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2;DKFZp686P168;STAG1 variant protein;STAG1;DKFZp781D1416 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.042651 46.426 1 0.78599 0.79862 NaN 1 Median 0.78599 0.79862 NaN 1 0 Median NaN NaN NaN 0 0 Median 6309900 3729500 2580400 6309900 3729500 2580400 0 0 0 1740 863 1790 4659 7297 7297 1 DGIISDIFDK CDTAFETSKFFTDLRDGIISDIFDKKKKK_ FTDLRDGIISDIFDKKKKK___________ R D G D K K 0 0 0 3 0 0 0 1 0 3 0 1 0 1 0 1 0 0 0 0 0 0 10 0 1121.5605 Q8IW76;B7ZKK7;P19525 Q8IW76 500 509 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.0052581 60.398 2 1.4701 1.5176 1.2541 2 Median 1.4701 1.5176 1.2541 2 0 Median NaN NaN NaN 0 0 Median 24203000 9190200 15013000 24203000 9190200 15013000 0 0 0 1741 1111 1791 4660;4661 7298;7299;7300 7300 3 DGIQLSEYLPEVK SKDSIFVKILQKLLKDGIQLSEYLPEVKDL LKDGIQLSEYLPEVKDLLQADQLGSLKSNP K D G V K D 0 0 0 1 0 1 2 1 0 1 2 1 0 0 1 1 0 0 1 1 0 0 13 0 1489.7664 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 1095 1107 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.00013325 80.245 2 2 1.1335 1.0003 10.142 4 Median 1.0422 1.0642 10.362 2 0 Median 1.193 0.95134 8.6917 2 0 Median 31877000 15730000 16147000 23462000 11872000 11590000 8415700 3858300 4557300 1742 1070 1792 4662;4663;4664;4665 7301;7302;7303;7304;7305 7301 5 DGLAALAYHAGLSDSAR LSRRECDTMADTLQRDGLAALAYHAGLSDS LAALAYHAGLSDSARDEVQQKWINQGGCQV R D G A R D 5 1 0 2 0 0 0 2 1 0 3 0 0 0 0 2 0 0 1 0 0 0 17 0 1686.8325 B2RAN0;P54132;H0YNU5;B7ZKN7;B7Z8C1 B2RAN0 911 927 BLM Bloom syndrome protein yes no 2 0.00042874 66.989 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1743 873 1793 4666;4667 7306;7307 7307 2 DGLDYILGALESGK KKKDGSSSVPLSFARDGLDYILGALESGKN RDGLDYILGALESGKNSGLYDSSGEEEEDA R D G G K N 1 0 0 2 0 0 1 3 0 1 3 1 0 0 0 1 0 0 1 0 0 0 14 0 1449.7351 Q5C9Z4 Q5C9Z4 214 227 NOM1 Nucleolar MIF4G domain-containing protein 1 yes yes 2 0.00014514 77.593 1 0.71566 0.75842 NaN 1 Median 0.71566 0.75842 NaN 1 0 Median NaN NaN NaN 0 0 Median 4154700 2279300 1875400 4154700 2279300 1875400 0 0 0 1744 1805 1794 4668 7308 7308 1 DGLEVAVLPHNIR NIGQLVDVKVLEKTKDGLEVAVLPHNIRAF TKDGLEVAVLPHNIRAFLPTSHLSDHVANG K D G I R A 1 1 1 1 0 0 1 1 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 0 1431.7834 Q14690;B4DH82;B4DES7 Q14690 649 661 PDCD11 Protein RRP5 homolog yes no 2 1.6302E-13 130.98 2 2 1.2068 1.1758 5.2936 4 Median 1.0631 1.1716 8.995 2 0 Median 1.3578 1.1758 1.7398 2 0 Median 222780000 107290000 115490000 135550000 69200000 66345000 87233000 38090000 49144000 1745 1741 1795 4669;4670;4671;4672 7309;7310;7311;7312;7313;7314;7315 7310 7 DGLGGLPDIVR DVKIVILPDYLEIARDGLGGLPDIVRDRVT EIARDGLGGLPDIVRDRVTSAVEALLSADS R D G V R D 0 1 0 2 0 0 0 3 0 1 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1110.6033 A0A140VJZ1;P45974 A0A140VJZ1 134 144 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 9.6497E-05 93.178 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10692000 0 10692000 10692000 0 10692000 0 0 0 1746 613 1796 4673 7316 7316 1 DGLIVETLTVGCK MHPKETTRQLSLAVKDGLIVETLTVGCKGS VKDGLIVETLTVGCKGSKAGIEQEGYWLPG K D G C K G 0 0 0 1 1 0 1 2 0 1 2 1 0 0 0 0 2 0 0 2 0 0 13 0 1403.733 Q15326;E7ENI9;J3QKD2;Q5BJG6;B7Z3W2;B0QZE2;B7Z2J6;Q6PJR5;A0A0A0MRY2;Q5UGI2;E7EV75;E9PE09 Q15326 62 74 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 2 0.0025719 64.439 1 2 1.7673 1.4241 5.1913 2 Median NaN NaN NaN 0 0 Median 1.7673 1.4241 5.1913 2 0 Median 15760000 3555500 12204000 5847800 0 5847800 9912000 3555500 6356500 1747 1758 1797 4674;4675;4676 7317;7318;7319;7320;7321 7320 5 DGLLDDEEFALANHLIK NTVLGKIWKLADVDKDGLLDDEEFALANHL LLDDEEFALANHLIKVKLEGHELPADLPPH K D G I K V 2 0 1 3 0 0 2 1 1 1 4 1 0 1 0 0 0 0 0 0 0 0 17 0 1911.9578 B2R5U3;A0A024R571;Q9H4M9;B4DMV9;B4DR44;B4DTR4 B2R5U3 493 509 EHD1 EH domain-containing protein 1 yes no 3 0.00032184 40.187 1 3.5638 3.6018 NaN 1 Median 3.5638 3.6018 NaN 1 0 Median NaN NaN NaN 0 0 Median 8620400 1662300 6958200 8620400 1662300 6958200 0 0 0 1748 172 1798 4677 7322 7322 1 DGLSEAAAQSR AVIPETEAVRRIVERDGLSEAAAQSRLQSQ IVERDGLSEAAAQSRLQSQMSGQQLVEQSH R D G S R L 3 1 0 1 0 1 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 11 0 1103.5207 Q13057 Q13057 504 514 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes yes 2 0.00041914 79.974 1 1.2772 1.2766 NaN 1 Median 1.2772 1.2766 NaN 1 0 Median NaN NaN NaN 0 0 Median 8870400 3966800 4903600 8870400 3966800 4903600 0 0 0 1749 1704 1799 4678 7323 7323 1 DGLVSLLTTSEGADEPQR MALELMTVLVGSPRKDGLVSLLTTSEGADE VSLLTTSEGADEPQRLQFPLPTAQRSLEPG K D G Q R L 1 1 0 2 0 1 2 2 0 0 3 0 0 0 1 2 2 0 0 1 0 0 18 0 1886.9222 Q71UH7;V9HWE7;P51570;K7ERJ9;B4E1A8 Q71UH7 70 87 GALK1;HEL-S-19 Galactokinase yes no 2 1.5935E-14 108.17 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1750 1596 1800 4679 7324 7324 1 DGMDNQGGYGSVGR GGSGMGGSGMGGYGRDGMDNQGGYGSVGRM RDGMDNQGGYGSVGRMGMGNNYSGGYGTPD R D G G R M 0 1 1 2 0 1 0 5 0 0 0 0 1 0 0 1 0 0 1 1 0 0 14 0 1411.5786 Q53F48;A0A024QZK8;P31942;A0A024QZP1;B4DHY1 Q53F48 288 301 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 2 1.9897E-06 100.55 1 2.8772 2.8588 NaN 1 Median 2.8772 2.8588 NaN 1 0 Median NaN NaN NaN 0 0 Median 8204500 2132900 6071700 8204500 2132900 6071700 0 0 0 1751 23 1801 4680 7325 7325 10 1 DGNASGTTLLEALDCILPPTRPTDK SANMPWFKGWKVTRKDGNASGTTLLEALDC EALDCILPPTRPTDKPLRLPLQDVYKIGGI K D G D K P 2 1 1 3 1 0 1 2 0 1 4 1 0 0 3 1 4 0 0 0 0 0 25 1 2654.3221 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q6P4C9;A0A087WV01;Q9H2I7;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q53HR1 Q6IPT9 220 244 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 no no 3 4.5058E-36 130.65 2 2.2592 2.7382 0.99486 2 Median 2.2592 2.7382 0.99486 2 0 Median NaN NaN NaN 0 0 Median 3067100000 954540000 2112500000 3067100000 954540000 2112500000 0 0 0 1752 1658;1790 1802 4681;4682 7326;7327;7328;7329;7330;7331;7332 7326 7 DGNGYISAAELR DSEEEIREAFRVFDKDGNGYISAAELRHVM FDKDGNGYISAAELRHVMTNLGEKLTDESL K D G L R H 2 1 1 1 0 0 1 2 0 1 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1264.6048 Q9BRL5;P0DP25;P0DP24;P0DP23;B4DJ51;B2RDW0;H0Y7A7;E7ETZ0;E7EMB3;G3V361;Q96HY3 Q9BRL5 96 107 CALM3;CALM2;CALM1 yes no 2 0.006454 60.305 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17800000 17800000 0 17800000 17800000 0 0 0 0 1753 890 1803 4683;4684 7333;7334 7334 2 DGNLHEGDIILK QIFVKEMTRTGLATKDGNLHEGDIILKING ATKDGNLHEGDIILKINGTVTENMSLTDAR K D G L K I 0 0 1 2 0 0 1 2 1 2 2 1 0 0 0 0 0 0 0 0 0 0 12 0 1322.683 B7Z2R3;A0A024R225;B7Z954;A0A024R233;A0A1B0GTW1;Q9UDY2 B7Z2R3 318 329 TJP2 Tight junction protein ZO-2 yes no 2 0.00035008 72.289 1 3.0725 3.1173 NaN 1 Median 3.0725 3.1173 NaN 1 0 Median NaN NaN NaN 0 0 Median 12852000 3150500 9701800 12852000 3150500 9701800 0 0 0 1754 101 1804 4685 7335 7335 1 DGNPDNETYLHR EQVSVVINFDLPVDKDGNPDNETYLHRIGR VDKDGNPDNETYLHRIGRTGRFGKRGLAVN K D G H R I 0 1 2 2 0 0 1 1 1 0 1 0 0 0 1 0 1 0 1 0 0 0 12 0 1429.6222 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;Q59FQ9;Q68DY7;B4DL69;Q69YM2;A0A024QZ90;I3L352;Q9HBZ9;Q7Z4W5 I3L0H8 383 394 DDX19A;DDX19B;DKFZp686C21137;hCG_1998531;DKFZp762C1313 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2;3 7.0162E-09 143.28 3 2.636 2.9855 12.718 3 Plateau 2.636 2.9855 12.718 3 0 Plateau NaN NaN NaN 0 0 Median 100480000 29538000 70944000 100480000 29538000 70944000 0 0 0 1755 593 1805 4686;4687;4688 7336;7337;7338;7339;7340 7336 5 DGPGETDAFGNSEGK PGVSPPAAPAAPGPKDGPGETDAFGNSEGK DGPGETDAFGNSEGKELVASGENKIKQGLL K D G G K E 1 0 1 2 0 0 2 4 0 0 0 1 0 1 1 1 1 0 0 0 0 0 15 0 1479.6114 A8K132;O94925;Q53TX0 A8K132 107 121 GLS Glutaminase kidney isoform, mitochondrial yes no 2 0.00032576 75.088 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9904300 0 9904300 9904300 0 9904300 0 0 0 1756 701 1806 4689;4690 7341;7342 7342 2 DGPGFYTTR VAVGLKQGKVIIVVKDGPGFYTTRCLAPMM VIIVVKDGPGFYTTRCLAPMMSEVIRILQE K D G T R C 0 1 0 1 0 0 0 2 0 0 0 0 0 1 1 0 2 0 1 0 0 0 9 0 1012.4614 E9KL44;P40939;B4DRH6;B4DDZ5;H0YFD6 E9KL44 541 549 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.021253 49.536 1 1.1686 1.2555 NaN 1 Median 1.1686 1.2555 NaN 1 0 Median NaN NaN NaN 0 0 Median 46998000 22836000 24163000 46998000 22836000 24163000 0 0 0 1757 1228 1807 4691 7343;7344 7343 2 DGPLNMILDDGGDLTNLIHTK DEEYLWCIEQTLYFKDGPLNMILDDGGDLT ILDDGGDLTNLIHTKYPQLLPGIRGISEET K D G T K Y 0 0 2 4 0 0 0 3 1 2 4 1 1 0 1 0 2 0 0 0 0 0 21 0 2251.1154 P23526 P23526 122 142 AHCY Adenosylhomocysteinase yes yes 3 6.7887E-06 46.578 1 1.9517 1.9329 NaN 1 Median 1.9517 1.9329 NaN 1 0 Median NaN NaN NaN 0 0 Median 5899300 1748400 4150900 5899300 1748400 4150900 0 0 0 1758 1512 1808 4692 7345 7345 1283 1 DGPPHQVLVVPLHSR KKEAVLAEKRQLGGKDGPPHQVLVVPLHSR DGPPHQVLVVPLHSRISLPEAMQLLQDRDT K D G S R I 0 1 0 1 0 1 0 1 2 0 2 0 0 0 3 1 0 0 0 3 0 0 15 0 1649.9002 Q2NL82;I3L1Q5 Q2NL82 79 93 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 3 0.00089901 32.815 2 0.56772 0.48156 0.41724 2 Median NaN NaN NaN 0 0 Median 0.56772 0.48156 0.41724 2 0 Median 10579000 6557700 4021200 0 0 0 10579000 6557700 4021200 1759 1776 1809 4693;4694 7346;7347 7346 2 DGQAMLWDLNEGK VTVSPDGSLCASGGKDGQAMLWDLNEGKHL GKDGQAMLWDLNEGKHLYTLDGGDIINALC K D G G K H 1 0 1 2 0 1 1 2 0 0 2 1 1 0 0 0 0 1 0 0 0 0 13 0 1475.6715 E9KL35;P63244;J3KPE3;D6RAC2;H0Y8W2;H0YAF8;D6R9Z1;H0YAM7;D6R9L0;D6REE5;D6RFX4;H0Y8R5 E9KL35 213 225 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 4.7765E-19 142.08 1 1.1108 1.2047 NaN 1 Median 1.1108 1.2047 NaN 1 0 Median NaN NaN NaN 0 0 Median 45026000 23046000 21980000 45026000 23046000 21980000 0 0 0 1760 1227 1810 4695 7348 7348 938 1 DGQILPVPNVVVR ELVPRRVAIFIEKTKDGQILPVPNVVVRDV TKDGQILPVPNVVVRDVACGANHTLVLDSQ K D G V R D 0 1 1 1 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 4 0 0 13 0 1404.8089 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 256 268 RCC2 Protein RCC2 yes no 2 0.010469 51.092 1 1 0.74208 0.68654 26.862 2 Median 0.82136 0.83016 NaN 1 0 Median 0.67044 0.56778 NaN 1 0 Median 14852000 8706500 6145400 9846500 5613000 4233500 5005300 3093400 1911900 1761 301 1811 4696;4697 7349;7350 7349 2 DGQVINETSQHHDDLE THSKRTLLIKTVETRDGQVINETSQHHDDL GQVINETSQHHDDLE_______________ R D G L E - 0 0 1 3 0 2 2 1 2 1 1 0 0 0 0 1 1 0 0 1 0 0 16 0 1835.7922 V9HWE1;P08670;Q53HU8 V9HWE1 451 466 HEL113;VIM Vimentin yes no 2;3 5.2957E-36 154.28 7 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 765980000 0 0 739800000 0 0 26178000 0 0 1762 1457 1812 4698;4699;4700;4701;4702;4703;4704;4705 7351;7352;7353;7354;7355;7356;7357;7358;7359 7355 9 DGQYILATGTYKPR DFEMPTVCTTIKVSKDGQYILATGTYKPRV KDGQYILATGTYKPRVRCYDTYQLSLKFER K D G P R V 1 1 0 1 0 1 0 2 0 1 1 1 0 0 1 0 2 0 2 0 0 0 14 1 1581.8151 Q9BSC4;B4DS83 Q9BSC4 63 76 NOL10 Nucleolar protein 10 yes no 2 0.00072702 75.819 2 2 1.3416 1.3155 12.246 4 Median 1.0388 1.1737 15.52 2 0 Median 1.5709 1.3514 3.1994 2 0 Median 79563000 33735000 45828000 37630000 16859000 20771000 41933000 16876000 25057000 1763 2000 1813 4706;4707;4708;4709 7360;7361;7362;7363;7364;7365;7366;7367;7368 7362 9 DGSAFEDGLR SQGHLTRAICCRVTRDGSAFEDGLRHPFIV CRVTRDGSAFEDGLRHPFIVNHPKVGRVSI R D G L R H 1 1 0 2 0 0 1 2 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1065.4727 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3 A0A024DAK3 1087 1096 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 7.8785E-05 98.033 2 1.8244 1.954 NaN 1 Median 1.8244 1.954 NaN 1 0 Median NaN NaN NaN 0 0 Median 49035000 8544600 40491000 49035000 8544600 40491000 0 0 0 1764 5 1814 4710;4711 7369;7370;7371 7370 3 DGSCGVAYVVQEPGDYEVSVK VEGPSKAEISFEDRKDGSCGVAYVVQEPGD AYVVQEPGDYEVSVKFNEEHIPDSPFVVPV K D G V K F 1 0 0 2 1 1 2 3 0 0 0 1 0 0 1 2 0 0 2 5 0 0 21 0 2257.0209 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5C6;Q2VP91 P21333 2290 2310 FLNA;FLJ00119 Filamin-A yes no 2 0.027601 36.445 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1765 1504 1815 4712 7372 7372 1 DGSCSVEYIPYEAGTYSLNVTYGGHQVPGSPFK VEGPSEAKMSCMDNKDGSCSVEYIPYEAGT NVTYGGHQVPGSPFKVPVHDVTDASKVKCS K D G F K V 1 0 1 1 1 1 2 5 1 1 1 1 0 1 3 4 2 0 4 3 0 0 33 0 3578.63 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1407 1439 FLNA;FLJ00119 Filamin-A yes no 3 0.00025494 26.493 1 2.4848 1.9882 NaN 1 Median NaN NaN NaN 0 0 Median 2.4848 1.9882 NaN 1 0 Median 7149500 2193000 4956600 0 0 0 7149500 2193000 4956600 1766 1504 1816 4713 7373 7373 1 DGSLASNPYSGDLTK YSIPFPTPTTPLTGRDGSLASNPYSGDLTK DGSLASNPYSGDLTKFGRGDASSPAPATTL R D G T K F 1 0 1 2 0 0 0 2 0 0 2 1 0 0 1 3 1 0 1 0 0 0 15 0 1523.7104 B4DZJ6;B4DYY5;F8W726;Q14157;H0Y5H6;H7C2T8 B4DZJ6 764 778 UBAP2L Ubiquitin-associated protein 2-like yes no 2 0.037474 39.179 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5618600 0 5618600 5618600 0 5618600 0 0 0 1767 1052 1817 4714 7374 7374 1 DGSLEDDEDEEDDLDEGVGGK DSSMVENEVIKSLGKDGSLEDDEDEEDDLD DEDEEDDLDEGVGGKRRSMEVKPAQASHTN K D G G K R 0 0 0 7 0 0 5 4 0 0 2 1 0 0 0 1 0 0 0 1 0 0 21 0 2236.8615 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1609 1629 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 2.5796E-15 102.52 2 0.94705 0.97056 4.6668 2 Median 0.94705 0.97056 4.6668 2 0 Median NaN NaN NaN 0 0 Median 24557000 10942000 13616000 24557000 10942000 13616000 0 0 0 1768 1699 1818 4715;4716 7375;7376;7377;7378;7379 7379 5 DGSLIVSSSYDGLCR LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR DGSLIVSSSYDGLCRIWDTASGQCLKTLID R D G C R I 0 1 0 2 1 0 0 2 0 1 2 0 0 0 0 4 0 0 1 1 0 0 15 0 1627.7512 P61964 P61964 182 196 WDR5 WD repeat-containing protein 5 yes yes 2 3.7816E-11 108.35 1 2 1.6793 1.4084 1.361 2 Median NaN NaN NaN 0 0 Median 1.6793 1.4084 1.361 2 0 Median 16548000 6709300 9838800 0 0 0 16548000 6709300 9838800 1769 1630 1819 4717;4718;4719 7380;7381;7382;7383 7380 4 DGTGVVEFVR HMREAGDVCYADVYRDGTGVVEFVRKEDMT ADVYRDGTGVVEFVRKEDMTYAVRKLDNTK R D G V R K 0 1 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 3 0 0 10 0 1077.5455 J3KTL2;Q07955;Q59FA2;J3KSR8;B7Z570 J3KTL2 155 164 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 1.6945E-09 130.75 2 2 1.3222 1.5711 50.537 4 Linear 1.2867 1.5053 1.0489 2 0 Median 0.74259 0.62734 0.24415 2 0 Median 609930000 272310000 337620000 565590000 247250000 318340000 44337000 25055000 19281000 1770 1333 1820 4720;4721;4722;4723 7384;7385;7386;7387;7388;7389;7390;7391;7392 7386 9 DGTIDFTPGSELLITK NINQGSITFAGGPGRDGTIDFTPGSELLIT GTIDFTPGSELLITKAKNGHLAVVAPRLNS R D G T K A 0 0 0 2 0 0 1 2 0 2 2 1 0 1 1 1 3 0 0 0 0 0 16 0 1705.8774 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 1008 1023 MYO1C Unconventional myosin-Ic no no 2 0.00015486 71.268 1 1 1.5746 1.466 26.464 2 Median 1.5794 1.7676 NaN 1 0 Median 1.5698 1.2158 NaN 1 0 Median 67045000 28321000 38724000 53896000 23190000 30706000 13149000 5130600 8018400 1771 1088;1189 1821 4724;4725 7393;7394 7394 2 DGTLKPGDTIIEPTSGNTGIGLALAAAVR VKDRISLRMIEDAERDGTLKPGDTIIEPTS SGNTGIGLALAAAVRGYRCIIVMPEKMSSE R D G V R G 4 1 1 2 0 0 1 5 0 3 3 1 0 0 2 1 4 0 0 1 0 0 29 1 2807.5029 C9JMA6;B7Z6W5;Q9NTF0;B7Z2D6;P0DN79;P35520 C9JMA6 133 161 CBS;DKFZp727E011 Cystathionine beta-synthase yes no 3 9.7907E-07 52.824 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13846000 0 13846000 13846000 0 13846000 0 0 0 1772 1086 1822 4726;4727 7395;7396 7396 2 DGTSPEEEIEIER VKQIGINKKSVKSAKDGTSPEEEIEIERQK AKDGTSPEEEIEIERQKAEMALLMMDEDED K D G E R Q 0 1 0 1 0 0 5 1 0 2 0 0 0 0 1 1 1 0 0 0 0 0 13 0 1502.6736 Q9H501 Q9H501 691 703 ESF1 ESF1 homolog yes yes 2 0.00010772 91.937 2 1 1.2841 1.1918 12.859 2 Median 1.0825 1.0882 NaN 1 0 Median 1.5233 1.3052 NaN 1 0 Median 25342000 12122000 13220000 19240000 9881600 9358000 6102600 2240200 3862300 1773 2033 1823 4728;4729;4730 7397;7398;7399;7400 7399 4 DGTTHQTSLELFMYLNEVAGK IEFKKGVPVKVTNVKDGTTHQTSLELFMYL TSLELFMYLNEVAGKHGVGRIDIVENRFIG K D G G K H 1 0 1 1 0 1 2 2 1 0 3 1 1 1 0 1 3 0 1 1 0 0 21 0 2353.126 Q5T6L4;P00966;A8KAP9;B4E395 Q5T6L4 240 260 ASS;ASS1 Argininosuccinate synthase yes no 3 4.4677E-06 62.362 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13114000 0 13114000 13114000 0 13114000 0 0 0 1774 1437 1824 4731;4732 7401;7402 7401 1136 2 DGVFLYFEDNAGVIVNNK HPAVVIRQRKSYRRKDGVFLYFEDNAGVIV FLYFEDNAGVIVNNKGEMKGSAITGPVAKE K D G N K G 1 0 3 2 0 0 1 2 0 1 1 1 0 2 0 0 0 0 1 3 0 0 18 0 2012.9844 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;J3KTJ3 Q9BTQ7 86 103 RPL23 60S ribosomal protein L23 yes no 2 1.1666E-63 178.32 3 1 0.7787 0.80556 20.388 2 Median 0.7787 0.80556 20.388 2 0 Median NaN NaN NaN 0 0 Median 109600000 35638000 73963000 62703000 35638000 27064000 46899000 0 46899000 1775 84 1825 4733;4734;4735;4736 7403;7404;7405;7406;7407 7404 5 DGVGMVEYLR HMREAGDVCYADVQKDGVGMVEYLRKEDME ADVQKDGVGMVEYLRKEDMEYALRKLDDTK K D G L R K 0 1 0 1 0 0 1 2 0 0 1 0 1 0 0 0 0 0 1 2 0 0 10 0 1137.5488 Q13242;A8K3M9;H0YIB4 Q13242 145 154 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.00080379 72.643 1 2.2422 2.2446 NaN 1 Median 2.2422 2.2446 NaN 1 0 Median NaN NaN NaN 0 0 Median 17099000 3863000 13236000 17099000 3863000 13236000 0 0 0 1776 1709 1826 4737 7408 7408 1541 1 DGVIEASINHEK IAPKMQSSLLAKAIRDGVIEASINHEKGYV AIRDGVIEASINHEKGYVQSKEMIDIYSTR R D G E K G 1 0 1 1 0 0 2 1 1 2 0 1 0 0 0 1 0 0 0 1 0 0 12 0 1310.6466 O95325;B3KNN7;B4DEB0;B4DPM7;Q96N86;B4DV84;Q8N9M2;Q6IBN0;O43242 O95325 25 36 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 2 0.00021299 89.171 2 1.5785 1.5706 NaN 1 Median 1.5785 1.5706 NaN 1 0 Median NaN NaN NaN 0 0 Median 11840000 2876700 8962900 11840000 2876700 8962900 0 0 0 1777 916 1827 4738;4739 7409;7410;7411 7410 3 DGVLAYAR VQGFFKKAGATFRLKDGVLAYARLSHLSDS GATFRLKDGVLAYARLSHLSDSKNVFNPEA K D G A R L 2 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 863.45012 Q14690;B4DH82;B4DES7 Q14690 388 395 PDCD11 Protein RRP5 homolog yes no 2 0.034605 49.358 1 0.82272 0.70802 NaN 1 Median NaN NaN NaN 0 0 Median 0.82272 0.70802 NaN 1 0 Median 7158800 3866800 3292000 0 0 0 7158800 3866800 3292000 1778 1741 1828 4740 7412 7412 1 DGVPEGAQLQGPVHR RRGPPRNAGEIGEMKDGVPEGAQLQGPVHR DGVPEGAQLQGPVHRNPTYRPRYRSRGPPR K D G H R N 1 1 0 1 0 2 1 3 1 0 1 0 0 0 2 0 0 0 0 2 0 0 15 0 1558.7852 A0A024RAV4;A0A024RAQ1;P16989;Q96GD7 A0A024RAV4 200 214 CSDA;YBX3 Y-box-binding protein 3 yes no 2 0.0030378 55.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1779 310 1829 4741 7413 7413 1 DGVVEITGK DVNHFAPDELTVKTKDGVVEITGKHEERQD LTVKTKDGVVEITGKHEERQDEHGYISRCF K D G G K H 0 0 0 1 0 0 1 2 0 1 0 1 0 0 0 0 1 0 0 2 0 0 9 0 916.48656 V9HW43;P04792;B4DL87 V9HW43 115 123 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 1;2 0.0019956 78.149 2 2 1.0605 0.99909 29.753 4 Median 1.1872 1.3465 23.437 2 0 Median 1.0605 0.85221 3.719 2 0 Median 356970000 151470000 205500000 346160000 146450000 199700000 10812000 5018100 5793900 1780 1443 1830 4742;4743;4744;4745 7414;7415;7416;7417;7418;7419 7415 6 DGVWNLQNEVTK ILPKCRTSYEEFTHKDGVWNLQNEVTKERT THKDGVWNLQNEVTKERTAQCFLRVDDESM K D G T K E 0 0 2 1 0 1 1 1 0 0 1 1 0 0 0 0 1 1 0 2 0 0 12 0 1401.6888 Q6P2Q9 Q6P2Q9 1211 1222 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00049783 70.1 1 1 0.7079 0.62249 3.3724 2 Median 0.6205 0.60782 NaN 1 0 Median 0.8076 0.63751 NaN 1 0 Median 25451000 15238000 10214000 22231000 13617000 8614800 3219900 1621100 1598800 1781 1854 1831 4746;4747 7420;7421;7422 7420 3 DGWPAMGIHGDK ETKRRCDELTRKMRRDGWPAMGIHGDKSQQ MRRDGWPAMGIHGDKSQQERDWVLNEFKHG R D G D K S 1 0 0 2 0 0 0 3 1 1 0 1 1 0 1 0 0 1 0 0 0 0 12 0 1282.5765 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2 B4DN41 353 364 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0064236 44.425 2 1.2414 1.2443 0.63271 2 Median 1.2414 1.2443 0.63271 2 0 Median NaN NaN NaN 0 0 Median 53420000 26103000 27317000 53420000 26103000 27317000 0 0 0 1782 1009 1832 4748;4749 7423;7424 7424 795 2 DGYDYDGYR EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP DAVYGRDGYDYDGYRLRVEFPRSGRGTGRG R D G Y R L 0 1 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 3 0 0 0 9 0 1122.4254 J3KTL2;Q07955;Q59FA2;A8K1L8 J3KTL2 75 83 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00064829 96.311 2 2 1.0276 1.0005 46.663 4 Median 1.2996 1.4964 2.369 2 0 Median 0.7886 0.6674 2.6971 2 0 Median 327640000 140040000 187600000 313220000 131940000 181270000 14424000 8094800 6329600 1783 1333 1833 4750;4751;4752;4753 7425;7426;7427;7428;7429;7430 7427 6 DGYIHYGQTVK LLDDDESEGEEFTVRDGYIHYGQTVKLVCS FTVRDGYIHYGQTVKLVCSVTGMALPRLII R D G V K L 0 0 0 1 0 1 0 2 1 1 0 1 0 0 0 0 1 0 2 1 0 0 11 0 1279.6197 B7Z8D8;D6R927;Q14663;A0A024R9Q8;Q06330 B7Z8D8 239 249 RBPJ;KBF2;RBPSUH Recombining binding protein suppressor of hairless yes no 2 0.0029374 69.786 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7531400 7531400 0 7531400 7531400 0 0 0 0 1784 287 1834 4754 7431;7432 7431 2 DHAISLSEPR PNSSESFEHIARSARDHAISLSEPRMLWGS ARSARDHAISLSEPRMLWGSDPYPHAEPQQ R D H P R M 1 1 0 1 0 0 1 0 1 1 1 0 0 0 1 2 0 0 0 0 0 0 10 0 1123.5622 E7EPN9;Q9Y520;B4DM27;B4DQN8 E7EPN9 797 806 PRRC2C Protein PRRC2C yes no 2 0.0068307 61.691 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2807300 2807300 0 2807300 2807300 0 0 0 0 1785 1219 1835 4755;4756 7433;7434 7433 2 DHASIQMNVAEVDK VPRKCSASNRIIGAKDHASIQMNVAEVDKV KDHASIQMNVAEVDKVTGRFNGQFKTYAIC K D H D K V 2 0 1 2 0 1 1 0 1 1 0 1 1 0 0 1 0 0 0 2 0 0 14 0 1555.7301 Q8WVC2;Q6FGH5;P63220;Q9BYK1 Q8WVC2 28 41 RPS21 40S ribosomal protein S21 yes no 2;3 1.955E-21 143.56 5 1 1.7489 1.9215 4.8468 5 Median 1.7198 1.9268 5.5923 4 0 Median 2.3842 1.9215 NaN 1 0 Median 344610000 129890000 214730000 342680000 129220000 213450000 1936100 660880 1275200 1786 1655 1836;1837 4757;4758;4759;4760;4761;4762 7435;7436;7437;7438;7439;7440;7441;7442 7435 1432 8 DHAVFTR PGLEPGDIIIVLDQKDHAVFTRRGEDLFMC IIIVLDQKDHAVFTRRGEDLFMCMDIQLVE K D H T R R 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 7 0 844.41915 P31689;B7Z5C0;Q9NXZ8 P31689 247 253 DNAJA1;HDJ2 DnaJ homolog subfamily A member 1 yes no 2 0.009996 116.11 1 1 0.89589 0.87794 77.473 2 Median 1.3528 1.5184 NaN 1 0 Median 0.59333 0.50764 NaN 1 0 Median 98662000 48827000 49835000 92729000 45303000 47425000 5933200 3523700 2409500 1787 1535 1838 4763;4764 7443;7444;7445 7444 3 DHAVVVGVYRPPPK NMKPQEQLTLEPYERDHAVVVGVYRPPPKV RDHAVVVGVYRPPPKVKN____________ R D H P K V 1 1 0 1 0 0 0 1 1 0 0 1 0 0 3 0 0 0 1 4 0 0 14 1 1532.8463 Q96BS4;P22087 Q96BS4 244 257 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 1.9504E-57 152.16 2 4 0.78714 0.79881 17.693 6 Median 0.70286 0.83966 4.5505 2 0 Median 0.86952 0.759 19.654 4 0 Median 485030000 270040000 214990000 343010000 194740000 148280000 142010000 75300000 66714000 1788 1506 1839 4765;4766;4767;4768;4769;4770 7446;7447;7448;7449;7450;7451;7452;7453;7454;7455;7456;7457;7458;7459;7460 7449 15 DHFYSDDDAIEADSEGDAEPCDK ATDTSDSEGSCGSEKDHFYSDDDAIEADSE AIEADSEGDAEPCDKENENDGESSVGTNMG K D H D K E 3 0 0 7 1 0 3 1 1 1 0 1 0 1 1 2 0 0 1 0 0 0 23 0 2599.9769 Q9Y3B9;A0JLN3 Q9Y3B9 54 76 RRP15 RRP15-like protein yes no 3 1.3275E-05 51.39 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12432000 0 12432000 12432000 0 12432000 0 0 0 1789 2134 1840 4771;4772 7461;7462;7463;7464 7464 4 DHGGALGPEEFK EQMQEFRASFNHFDKDHGGALGPEEFKACL FDKDHGGALGPEEFKACLISLGYDVENDRQ K D H F K A 1 0 0 1 0 0 2 3 1 0 1 1 0 1 1 0 0 0 0 0 0 0 12 0 1255.5833 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;A0A0S2Z3X3 A0A0S2Z3G9 780 791 ACTN4 Alpha-actinin-4 yes no 2 3.1474E-23 133.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1790 548 1841 4773 7465 7465 1 DHIMEIFSTYGK PTKVHIGRLTRNVTKDHIMEIFSTYGKIKM VTKDHIMEIFSTYGKIKMIDMPVERMHPHL K D H G K I 0 0 0 1 0 0 1 1 1 2 0 1 1 1 0 1 1 0 1 0 0 0 12 0 1439.6755 H3BV80;H3BMS0;H3BMM9;H3BTC0;D3DU92;Q15287;A0A024R9P1 H3BV80 81 92 RNPS1;hCG_2026745 RNA-binding protein with serine-rich domain 1 yes no 2 1.1829E-13 121.9 2 1.081 1.1356 NaN 1 Median 1.081 1.1356 NaN 1 0 Median NaN NaN NaN 0 0 Median 30232000 8003700 22229000 30232000 8003700 22229000 0 0 0 1791 1192 1842 4774;4775 7466;7467;7468 7466 905 3 DHINDIIK HQARKRYRDRLQYFRDHINDIIKIQAFIRA DRLQYFRDHINDIIKIQAFIRANKARDDYK R D H I K I 0 0 1 2 0 0 0 0 1 3 0 1 0 0 0 0 0 0 0 0 0 0 8 0 966.51345 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;H0YLE8;B4E2M0;Q6P1N4 A4QPB0 834 841 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.011052 70.816 1 1.8895 1.9972 NaN 1 Median 1.8895 1.9972 NaN 1 0 Median NaN NaN NaN 0 0 Median 20121000 7590200 12531000 20121000 7590200 12531000 0 0 0 1792 352 1843 4776 7469 7469 1 DHIVLTVLPDQDQSDEAQEK GKLPRLDSVVRLQFKDHIVLTVLPDQDQSD TVLPDQDQSDEAQEKMVYIYHSLKNSRETH K D H E K M 1 0 0 4 0 3 2 0 1 1 2 1 0 0 1 1 1 0 0 2 0 0 20 0 2279.0917 Q8IUF8 Q8IUF8 370 389 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 3 0.00018642 36.253 1 2 1.2676 0.9956 9.5525 2 Median NaN NaN NaN 0 0 Median 1.2676 0.9956 9.5525 2 0 Median 27124000 22133000 4990300 17779000 17779000 0 9344400 4354100 4990300 1793 1891 1844 4777;4778;4779 7470;7471;7472;7473;7474;7475;7476 7475 7 DHLSFR VEMHLRSEHPPLCGRDHLSFRSYYFPVKNV SEHPPLCGRDHLSFRSYYFPVKNVIDGDLC R D H F R S 0 1 0 1 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 0 0 0 6 0 773.38204 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 1159 1164 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.054104 69.432 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8905500 0 8905500 8905500 0 8905500 0 0 0 1794 764 1845 4780 7477 7477 1 DHLYGTLDPNTR VEGVAHIIDPKAISKDHLYGTLDPNTREWT ISKDHLYGTLDPNTREWTDGLFTHVLRKII K D H T R E 0 1 1 2 0 0 0 1 1 0 2 0 0 0 1 0 2 0 1 0 0 0 12 0 1400.6684 Q14204 Q14204 2262 2273 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0042605 64.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5171400 0 5171400 5171400 0 5171400 0 0 0 1795 1729 1846 4781 7478;7479 7479 2 DHNVEFR IIKEVLLEAQDMAVRDHNVEFRSNLYIAES EAQDMAVRDHNVEFRSNLYIAESTSGRGQC R D H F R S 0 1 1 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 915.41988 E7ESL0;J3KQY1;Q9NWU5 E7ESL0 131 137 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 0.012163 106.36 1 1.0944 1.1238 NaN 1 Median 1.0944 1.1238 NaN 1 0 Median NaN NaN NaN 0 0 Median 14304000 6554400 7750000 14304000 6554400 7750000 0 0 0 1796 1222 1847 4782 7480;7481 7480 2 DHPLPEVAHVK VKSEDFSLPAYMDRRDHPLPEVAHVKHLSA MDRRDHPLPEVAHVKHLSASQKALKEKEKA R D H V K H 1 0 0 1 0 0 1 0 2 0 1 1 0 0 2 0 0 0 0 2 0 0 11 0 1240.6564 P13073;Q86WV2;H3BPG0;H3BN72;H3BNV9 P13073 43 53 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 3 0.00064744 62.408 2 1.1845 1.2971 5.3993 2 Median 1.1845 1.2971 5.3993 2 0 Median NaN NaN NaN 0 0 Median 92329000 49295000 43034000 92329000 49295000 43034000 0 0 0 1797 1477 1848 4783;4784 7482;7483 7482 2 DHQTITIQEMPEK ENNPLETEYGLSVYKDHQTITIQEMPEKAP YKDHQTITIQEMPEKAPAGQLPRSVDVILD K D H E K A 0 0 0 1 0 2 2 0 1 2 0 1 1 0 1 0 2 0 0 0 0 0 13 0 1568.7505 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 195 207 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 7.9872E-07 101.71 5 2.5499 2.5787 NaN 1 Median 2.5499 2.5787 NaN 1 0 Median NaN NaN NaN 0 0 Median 15804000 5746900 10057000 15804000 5746900 10057000 0 0 0 1798 568 1849 4785;4786;4787;4788;4789 7484;7485;7486;7487;7488;7489;7490 7485 420 7 DHQYGLPIK VLLYDLRSDKPLLVKDHQYGLPIKSVHFQD KPLLVKDHQYGLPIKSVHFQDSLDLILSAD K D H I K S 0 0 0 1 0 1 0 1 1 1 1 1 0 0 1 0 0 0 1 0 0 0 9 0 1069.5556 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 268 276 NOL10 Nucleolar protein 10 yes no 2 1.9871E-05 118.33 1 2 1.3522 1.0497 28.785 3 Median 0.58715 0.66267 NaN 1 0 Median 1.362 1.087 4.9406 2 0 Median 90657000 54347000 36311000 65519000 44002000 21517000 25138000 10345000 14794000 1799 2000 1850 4790;4791;4792 7491;7492;7493;7494;7495 7492 5 DHQYQFLEDAVR CDTLTCRDCQLNAHKDHQYQFLEDAVRNQR AHKDHQYQFLEDAVRNQRKLLASLVKRLGD K D H V R N 1 1 0 2 0 2 1 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 12 0 1519.7056 B2R8R5;Q13263;M0R3C0;M0R2I3 B2R8R5 239 250 TRIM28 Transcription intermediary factor 1-beta yes no 2 1.1856E-37 179.19 2 2 1.5758 1.1736 33.873 4 Linear 1.5363 1.6232 12.48 2 0 Median 1.1169 0.91522 1.7835 2 0 Median 88913000 36616000 52297000 67198000 26635000 40563000 21715000 9980300 11734000 1800 862 1851 4793;4794;4795;4796 7496;7497;7498;7499;7500;7501;7502;7503;7504;7505;7506;7507 7498 12 DHTLVQTIAR LKFIDPFCKIAAKTKDHTLVQTIARGVFEA AAKTKDHTLVQTIARGVFEAIVDQSPFVPE K D H A R G 1 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1152.6251 Q14684;Q6PJM8 Q14684 205 214 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 6.0556E-08 113.71 1 2 1.6613 1.3406 6.2089 3 Median 1.1546 1.2349 NaN 1 0 Median 1.6828 1.3674 2.8052 2 0 Median 72755000 35698000 37057000 45167000 24104000 21063000 27587000 11594000 15994000 1801 1740 1852 4797;4798;4799 7508;7509;7510;7511 7511 4 DHTVSGDEDYCPR WVHDSIDYRFNHHCKDHTVSGDEDYCPRSK CKDHTVSGDEDYCPRSKKANLGKNASMNTQ K D H P R S 0 1 0 3 1 0 1 1 1 0 0 0 0 0 1 1 1 0 1 1 0 0 13 0 1549.6103 Q9UIG0 Q9UIG0 943 955 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 3.2688E-29 149.96 3 4 19.997 17.422 13.105 3 Median NaN NaN NaN 0 0 Median 19.997 17.422 13.105 3 0 Median 64712000 1111600 63600000 38514000 0 38514000 26197000 1111600 25086000 1802 2103 1853 4800;4801;4802;4803;4804;4805;4806 7512;7513;7514;7515;7516;7517;7518 7514 7 DHYPCVSSLEQLTELGR RRLQEKTSKLPDMLKDHYPCVSSLEQLTEL YPCVSSLEQLTELGRETDAFVCRPNAALCR K D H G R E 0 1 0 1 1 1 2 1 1 0 3 0 0 0 1 2 1 0 1 1 0 0 17 0 2002.9418 B2RMQ4;Q8WWK9 B2RMQ4 643 659 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.0070188 33.685 2 0.76393 0.64996 69.56 2 Median NaN NaN NaN 0 0 Median 0.76393 0.64996 69.56 2 0 Median 12600000 6012500 6587600 0 0 0 12600000 6012500 6587600 1803 895 1854 4807;4808 7519;7520 7519 2 DIAAGEELLYDYGDR HDIDGVPHLILIASRDIAAGEELLYDYGDR DIAAGEELLYDYGDRSKASIEAHPWLKH__ R D I D R S 2 1 0 3 0 0 2 2 0 1 2 0 0 0 0 0 0 0 2 0 0 0 15 0 1698.7737 E3VVS3;A0A0C4DFR3;Q9NQR1 E3VVS3 295 309 SETD8 N-lysine methyltransferase SETD8 yes no 2 1.4847E-15 118.37 1 2 2.7794 2.3473 8.4821 2 Median NaN NaN NaN 0 0 Median 2.7794 2.3473 8.4821 2 0 Median 28169000 4363800 23805000 12365000 0 12365000 15803000 4363800 11440000 1804 505 1855 4809;4810;4811 7521;7522;7523;7524 7521 4 DIALSLPQLPR TLDTCLKLDDTVYLRDIALSLPQLPRELPS VYLRDIALSLPQLPRELPSSHTNAKVAEVL R D I P R E 1 1 0 1 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 11 0 1221.7081 B3KMB8;A0A024R419;Q9NYY8 B3KMB8 557 567 KIAA0971;FASTKD2 FAST kinase domain-containing protein 2 yes no 2 0.00031294 87.913 1 1.7448 1.7595 NaN 1 Median 1.7448 1.7595 NaN 1 0 Median NaN NaN NaN 0 0 Median 6228000 2684200 3543800 6228000 2684200 3543800 0 0 0 1805 147 1856 4812 7525 7525 1 DICACAATGTGK TPIQKACIPVGLLGKDICACAATGTGKTAA LGKDICACAATGTGKTAAFALPVLERLIYK K D I G K T 3 0 0 1 2 0 0 2 0 1 0 1 0 0 0 0 2 0 0 0 0 0 12 0 1223.5275 B3GQE6;A0A087X059;B7Z6D5;Q96GQ7 B3GQE6 226 237 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.00048613 79.693 2 1 1.1021 0.88082 NaN 1 Median NaN NaN NaN 0 0 Median 1.1021 0.88082 NaN 1 0 Median 11873000 9657700 2215400 7738400 7738400 0 4134700 1919400 2215400 1806 899;1099 1857 4813;4814;4815 7526;7527;7528;7529 7527 4 DICNDVLSLLEK QMAREYREKIETELRDICNDVLSLLEKFLI ELRDICNDVLSLLEKFLIPNASQAESKVFY R D I E K F 0 0 1 2 1 0 1 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 12 0 1417.7123 D0PNI1;P63104;B0AZS6;E7EX29;E7ESK7 D0PNI1 92 103 YWHAZ 14-3-3 protein zeta/delta yes no 2 1.3299E-12 129.16 2 1.7969 1.7786 NaN 1 Median 1.7969 1.7786 NaN 1 0 Median NaN NaN NaN 0 0 Median 9453000 3426300 6026700 9453000 3426300 6026700 0 0 0 1807 1182 1858 4816;4817 7530;7531 7530 2 DIDAFWLQR SGELMSSKKKDLHPRDIDAFWLQRQLSRFY KDLHPRDIDAFWLQRQLSRFYDDAIVSQKK R D I Q R Q 1 1 0 2 0 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 9 0 1162.5771 O75643;A4FU77 O75643 262 270 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.6857E-05 120.92 2 2 0.93742 0.8969 12.648 4 Median 0.8164 0.82949 12.267 2 0 Median 1.0918 0.95976 10.798 2 0 Median 29795000 16245000 13550000 26861000 14777000 12084000 2934100 1468200 1465900 1808 1411 1859 4818;4819;4820;4821 7532;7533;7534;7535;7536;7537;7538 7532 7 DIDEVSSLLR EILPNLVCCSAKNLRDIDEVSSLLRTSIMS AKNLRDIDEVSSLLRTSIMSKQYGNEVFLA R D I L R T 0 1 0 2 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1145.5928 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 105 114 CCT8 T-complex protein 1 subunit theta yes no 2 0.00041053 87.308 4 3.113 3.1088 NaN 1 Median 3.113 3.1088 NaN 1 0 Median NaN NaN NaN 0 0 Median 32989000 3982800 29006000 32989000 3982800 29006000 0 0 0 1809 1592 1860 4822;4823;4824;4825 7539;7540;7541;7542;7543 7542 5 DIDIHEVR MKVTEKIPVRHLYTKDIDIHEVRIGWSLTT VRHLYTKDIDIHEVRIGWSLTTSGMLLGEE K D I V R I 0 1 0 2 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 1 0 0 8 0 995.50361 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5;Q5RI18 B4DLR3 312 319 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 0.0029488 105.57 5 2 0.95371 0.87905 51.529 4 Median 1.377 1.4901 32.16 2 0 Median 0.74843 0.64811 0.62646 2 0 Median 1095100000 261820000 833310000 1015900000 216760000 799150000 79224000 45063000 34160000 1810 999 1861 4826;4827;4828;4829;4830;4831;4832 7544;7545;7546;7547;7548;7549;7550;7551;7552;7553;7554 7549 11 DIDILIVR VIHCKSLPGVVTRHKDIDILIVRENTEGEY GVVTRHKDIDILIVRENTEGEYSSLEHESV K D I V R E 0 1 0 2 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 1 0 0 8 0 955.57023 H7C1W2;E9PF84;O15384;G5E9Q7;D3DWV9;E7EQB8;P51553 H7C1W2 100 107 IDH3G;hCG_2004980 Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial yes no 2 0.030669 51.787 1 1.1076 1.2095 NaN 1 Median 1.1076 1.2095 NaN 1 0 Median NaN NaN NaN 0 0 Median 30070000 13791000 16279000 30070000 13791000 16279000 0 0 0 1811 1199 1862 4833 7555 7555 1 DIDILNSAGK LSKMQREWYTRILMKDIDILNSAGKMDKMR RILMKDIDILNSAGKMDKMRLLNILMQLRK K D I G K M 1 0 1 2 0 0 0 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1044.5451 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 431 440 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.0067028 58.433 1 2.0465 2.2888 NaN 1 Median 2.0465 2.2888 NaN 1 0 Median NaN NaN NaN 0 0 Median 85967000 24502000 61465000 85967000 24502000 61465000 0 0 0 1812 1391 1863 4834 7556;7557 7557 2 DIDISSPEFK VTAYTVDVTGREGAKDIDISSPEFKIKIPR REGAKDIDISSPEFKIKIPRHELTEISNVD K D I F K I 0 0 0 2 0 0 1 0 0 2 0 1 0 1 1 2 0 0 0 0 0 0 10 0 1149.5554 Q09666;B4DTV0 Q09666 172 181 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00051176 85.676 2 2 1.3094 1.6115 33.579 4 Linear 1.5738 1.5714 3.5435 2 0 Median 1.092 0.88076 4.314 2 0 Median 57534000 27675000 29859000 53181000 25341000 27839000 4353000 2333100 2019800 1813 1696 1864 4835;4836;4837;4838 7558;7559;7560;7561;7562 7560 5 DIDNNLITSTPR KEERENPSKRSRIERDIDNNLITSTPRAGE IERDIDNNLITSTPRAGEKPNKQISRVRRK R D I P R A 0 1 2 2 0 0 0 0 0 2 1 0 0 0 1 1 2 0 0 0 0 0 12 0 1357.6838 A0A024R5Q8;Q05D32;H0YMH7;H0YNU2;H0YNW9 A0A024R5Q8 77 88 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 1.4823E-22 153.12 2 2 1.1651 1.0843 11.997 4 Median 0.95365 0.95896 12.44 2 0 Median 1.341 1.1321 1.1673 2 0 Median 47618000 23342000 24276000 35733000 17800000 17933000 11885000 5542300 6342400 1814 187 1865 4839;4840;4841;4842 7563;7564;7565;7566;7567;7568;7569;7570;7571;7572;7573;7574;7575 7564 13 DIEDVFYK CRIYVGNLPPDIRTKDIEDVFYKYGAIRDI PPDIRTKDIEDVFYKYGAIRDIDLKNRRGG K D I Y K Y 0 0 0 2 0 0 1 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1027.4862 J3KTL2;Q07955;Q59FA2;A8K1L8;J3QQV5;J3KSW7 J3KTL2 31 38 SRSF1 Serine/arginine-rich splicing factor 1 yes no 1;2 0.0082133 85.064 3 2 1.3312 1.5625 46.598 5 Plateau 1.3385 1.5734 8.7582 3 0 Plateau 0.79469 0.64038 4.1068 2 0 Median 764300000 320060000 444240000 742100000 308250000 433850000 22197000 11805000 10392000 1815 1333 1866 4843;4844;4845;4846;4847 7576;7577;7578;7579;7580;7581;7582;7583;7584;7585 7578 10 DIEEIIDELK MVQINDNYYEDLTAKDIEEIIDELKAGKIP DLTAKDIEEIIDELKAGKIPKPGPRSGRFS K D I L K A 0 0 0 2 0 0 3 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1215.6234 Q9UEH5;Q6IPW4;Q6IB76;A8K750;E7EPT4;P19404 Q9UEH5 182 191 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 2 0.0040971 73.985 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2738300 0 2738300 2738300 0 2738300 0 0 0 1816 766 1867 4848;4849;4850 7586;7587;7588 7588 3 DIELSDDPYDCIR RIPRVRVLEDEEGSKDIELSDDPYDCIRLS SKDIELSDDPYDCIRLSVENVPCIVTLCKI K D I I R L 0 1 0 4 1 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 0 13 0 1609.693 B2RDZ9;A0A024R2P7;Q15024 B2RDZ9 179 191 EXOSC7 Exosome complex component RRP42 yes no 2 0.00013105 79.693 1 2 1.0027 0.86694 7.3368 3 Median 0.77775 0.77119 NaN 1 0 Median 1.0187 0.87484 1.2821 2 0 Median 21073000 8775000 12298000 12036000 5594800 6440700 9037000 3180200 5856800 1817 120 1868 4851;4852;4853 7589;7590;7591;7592 7589 4 DIENQYETQITQIEHEVSSSGQEVQSSAK DMRQEYEQLIAKNRKDIENQYETQITQIEH HEVSSSGQEVQSSAKEVTQLRHGVQELEIE K D I A K E 1 0 1 1 0 5 5 1 1 3 0 1 0 0 0 5 2 0 1 2 0 0 29 0 3263.5066 CON__P35527;P35527;K7EQQ3 CON__P35527 340 368 KRT9 Keratin, type I cytoskeletal 9 yes no 3 2.8533E-58 136.14 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1323900000 1323900000 0 1323900000 1323900000 0 0 0 0 + 1818 1165 1869 4854;4855;4856 7593;7594;7595;7596 7595 4 DIEQFTEFFENPAFRPDGLK VAHMMPDLPNVGLERDIEQFTEFFENPAFR TEFFENPAFRPDGLKLYPTLVIRGTGLYEL R D I L K L 1 1 1 2 0 1 3 1 0 1 1 1 0 4 2 0 1 0 0 0 0 0 20 1 2399.1434 Q9H9T3;B4DXV1;B4DPB7;B4DKA4 Q9H9T3 297 316 ELP3 Elongator complex protein 3 yes no 3 5.5663E-14 102.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4512900 0 4512900 4512900 0 4512900 0 0 0 1819 2047 1870 4857 7597 7597 1 DIFMFITR IYAPEAPYTSPDKLKDIFMFITRQLKGLED TSPDKLKDIFMFITRQLKGLEDTKSPQFNR K D I T R Q 0 1 0 1 0 0 0 0 0 2 0 0 1 2 0 0 1 0 0 0 0 0 8 0 1041.5317 Q9NTI5;B7Z5S1 Q9NTI5 105 112 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2 0.046504 42.109 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1820 2069 1871 4858 7598 7598 1897 1 DIFPYSENK IFFFGTHETAFLGPKDIFPYSENKEKYGKP AFLGPKDIFPYSENKEKYGKPNKRKGFNEG K D I N K E 0 0 1 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 9 0 1111.5186 O75475;Q05CM9 O75475 57 65 PSIP1 PC4 and SFRS1-interacting protein yes no 2 0.001665 82.452 2 2 0.96432 0.91473 10.092 4 Median 0.74203 0.83224 2.7489 2 0 Median 1.2304 0.989 0.42268 2 0 Median 192410000 109330000 83081000 153990000 92274000 61715000 38417000 17051000 21366000 1821 1405 1872 4859;4860;4861;4862 7599;7600;7601;7602;7603;7604;7605;7606 7599 8 DIFSEVGPVVSFR RVGNIPYEATEEQLKDIFSEVGPVVSFRLV LKDIFSEVGPVVSFRLVYDRETGKPKGYGF K D I F R L 0 1 0 1 0 0 1 1 0 1 0 0 0 2 1 2 0 0 0 3 0 0 13 0 1450.7456 A0A0A0MT56;E9PID8;B4DUD5;E7EWR4;B3V096;P33240 A0A0A0MT56 25 37 CSTF2 Cleavage stimulation factor subunit 2 yes no 2 0.00021605 69.721 1 2.2752 2.3345 NaN 1 Median 2.2752 2.3345 NaN 1 0 Median NaN NaN NaN 0 0 Median 6495800 2633700 3862100 6495800 2633700 3862100 0 0 0 1822 485 1873 4863 7607 7607 1 DIFSEVGSVVSFR FVGNIPYEATEEQLKDIFSEVGSVVSFRLV LKDIFSEVGSVVSFRLVYDRETGKPKGYGF K D I F R L 0 1 0 1 0 0 1 1 0 1 0 0 0 2 0 3 0 0 0 3 0 0 13 0 1440.7249 Q9H0L4 Q9H0L4 34 46 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 2 0.00044472 84.507 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1839400 0 1839400 1839400 0 1839400 0 0 0 1823 2024 1874 4864 7608 7608 1 DIGEGNLSTAAAAALAAAAVK EVVESEGERKTKVERDIGEGNLSTAAAAAL LSTAAAAALAAAAVKAKHLAAVEERKIKSL R D I V K A 9 0 1 1 0 0 1 2 0 1 2 1 0 0 0 1 1 0 0 1 0 0 21 0 1883.9953 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 887 907 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 3.9838E-16 111.12 3 0.62347 0.65313 NaN 1 Median 0.62347 0.65313 NaN 1 0 Median NaN NaN NaN 0 0 Median 33097000 19686000 13411000 33097000 19686000 13411000 0 0 0 1824 321 1875 4865;4866;4867 7609;7610;7611;7612 7610 4 DIGVPMTSVR AAHFDGKGEVEEYFRDIGVPMTSVRLPCYF EEYFRDIGVPMTSVRLPCYFENLLSHFLPQ R D I V R L 0 1 0 1 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 2 0 0 10 0 1073.5539 Q9HBL8;I3L543;I3L0Y6;I3L1Y8;I3L3I6 Q9HBL8 142 151 NMRAL1 NmrA-like family domain-containing protein 1 yes no 2 0.036576 41.029 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1825 2049 1876 4868 7613 7613 1881 1 DIHEELPK LFQSSGLTNGIIEEKDIHEELPKRKERKQE NGIIEEKDIHEELPKRKERKQEEREDDKDS K D I P K R 0 0 0 1 0 0 2 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 8 0 979.49746 A0A024R2Z6;Q9BVP2 A0A024R2Z6 456 463 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0047461 92.653 2 2 1.1751 0.94442 2.2673 3 Median 0.86945 0.98134 NaN 1 0 Median 1.1836 0.94358 0.12654 2 0 Median 132320000 81833000 50490000 95113000 64666000 30447000 37209000 17166000 20043000 1826 125 1877 4869;4870;4871;4872 7614;7615;7616;7617;7618;7619;7620 7615 7 DIHELFVPENK ELLQEQNIVPYTIIKDIHELFVPENKLDHV TIIKDIHELFVPENKLDHVRAEAETLPSLS K D I N K L 0 0 1 1 0 0 2 0 1 1 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1339.6772 Q5TB52;B4DWB5;O95340 Q5TB52 223 233 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 0.0024609 74.376 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12594000 0 12594000 12594000 0 12594000 0 0 0 1827 1044 1878 4873 7621 7621 1 DIIALNPLYR LMVEALTAEIVKTIRDIIALNPLYRESVLQ VKTIRDIIALNPLYRESVLQMMQAGQRVVD R D I Y R E 1 1 1 1 0 0 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 0 10 0 1186.671 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;A4VCH6 K7EJE8 172 181 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.00046576 85.064 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10116000 0 10116000 10116000 0 10116000 0 0 0 1828 946 1879 4874;4875 7622;7623 7623 2 DIICQIAYAR YNTPKYRMIVRVTNRDIICQIAYARIEGDM RVTNRDIICQIAYARIEGDMIVCAAYAHEL R D I A R I 2 1 0 1 1 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1221.6176 A2RUM7;P46777;Q59GX9;B3KTM6;Q9BUV4;Q5T7N0 A2RUM7 59 68 RPL5 60S ribosomal protein L5 yes no 2 1.094E-21 148.14 4 2 0.82536 0.69449 2.8106 2 Median NaN NaN NaN 0 0 Median 0.82536 0.69449 2.8106 2 0 Median 124690000 107030000 17666000 83548000 83548000 0 41146000 23480000 17666000 1829 653 1880 4876;4877;4878;4879;4880;4881 7624;7625;7626;7627;7628;7629;7630;7631;7632 7624 9 DIIDTPMDFATVR PFRQPVDLLEYPDYRDIIDTPMDFATVRET YRDIIDTPMDFATVRETLEAGNYESPMELC R D I V R E 1 1 0 3 0 0 0 0 0 2 0 0 1 1 1 0 2 0 0 1 0 0 13 0 1492.7232 Q8WWQ0;Q9NWP3 Q8WWQ0 1355 1367 PHIP PH-interacting protein yes no 2 6.2537E-05 79.201 3 4 1.2912 1.136 22.935 4 Median 0.94198 0.95958 NaN 1 0 Median 1.5996 1.3448 24.767 3 0 Median 65586000 44315000 21271000 50290000 38389000 11901000 15296000 5926300 9370000 1830 1942 1881;1882 4882;4883;4884;4885;4886;4887;4888 7633;7634;7635;7636;7637;7638;7639;7640;7641 7633 1777 9 DIIGLAETGSGK TKIQIEAIPLALQGRDIIGLAETGSGKTGA QGRDIIGLAETGSGKTGAFALPILNALLET R D I G K T 1 0 0 1 0 0 1 3 0 2 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1159.6085 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;B4DYP6 Q53GJ1 56 67 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 4.3013E-08 115.7 1 1.1078 1.2382 NaN 1 Median 1.1078 1.2382 NaN 1 0 Median NaN NaN NaN 0 0 Median 99004000 45923000 53081000 99004000 45923000 53081000 0 0 0 1831 313 1883 4889 7642;7643 7643 2 DIIGVAETGSGK TPIQRQAIPIGLQNRDIIGVAETGSGKTAA QNRDIIGVAETGSGKTAAFLIPLLVWITTL R D I G K T 1 0 0 1 0 0 1 3 0 2 0 1 0 0 0 1 1 0 0 1 0 0 12 0 1145.5928 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56;H0YI52 B3KY11 410 421 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.021812 38.402 1 1.6261 1.3549 NaN 1 Median NaN NaN NaN 0 0 Median 1.6261 1.3549 NaN 1 0 Median 1760900 597760 1163200 0 0 0 1760900 597760 1163200 1832 63 1884 4890 7644 7644 1 DIIHDPGR VDFAERHGYIKGIVKDIIHDPGRGAPLAKV YIKGIVKDIIHDPGRGAPLAKVVFRDPYRF K D I G R G 0 1 0 2 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 0 8 0 921.46683 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 47 54 RPL8 60S ribosomal protein L8 yes no 2;3 0.0018665 105.04 3 3 0.84945 0.86212 25.365 4 Median 0.84143 1.0012 29.32 3 0 Median 0.85756 0.74236 NaN 1 0 Median 3181900000 1614200000 1567700000 2978800000 1542300000 1436600000 203080000 71957000 131130000 1833 1653 1885 4891;4892;4893;4894;4895;4896 7645;7646;7647;7648;7649;7650;7651;7652;7653 7648 9 DIIHYDPTK SNSTNRGSVAAKKFKDIIHYDPTKQDHATY AAKKFKDIIHYDPTKQDHATYERKRDDKPK K D I T K Q 0 0 0 2 0 0 0 0 1 2 0 1 0 0 1 0 1 0 1 0 0 0 9 0 1100.5502 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50 A0A024R250 949 957 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.00079125 94.309 2 2 1.2112 1.1244 1.2442 2 Median 1.0141 1.1146 NaN 1 0 Median 1.4465 1.1344 NaN 1 0 Median 62576000 36411000 26166000 56602000 34895000 21707000 5973800 1515500 4458300 1834 104 1886 4897;4898;4899;4900 7654;7655;7656;7657;7658;7659 7655 6 DIIIFVGTPVQK GKAMHTPKPSVGEEKDIIIFVGTPVQKLDL EEKDIIIFVGTPVQKLDLTENLTGSKRRPQ K D I Q K L 0 0 0 1 0 1 0 1 0 3 0 1 0 1 1 0 1 0 0 2 0 0 12 0 1328.7704 P46013 P46013 1308 1319 MKI67 Antigen KI-67 yes yes 2 5.5677E-18 144.65 2 2 2.3869 2.3255 18.502 4 Median 1.7482 1.9826 2.974 2 0 Median 3.2553 2.7245 2.8031 2 0 Median 342550000 110030000 232520000 247390000 88766000 158620000 95159000 21264000 73895000 1835 1569 1887 4901;4902;4903;4904 7660;7661;7662;7663;7664;7665;7666;7667;7668 7662 9 DIILGMEISAPSQQR KNNVNVASLTQSEIRDIILGMEISAPSQQR DIILGMEISAPSQQRQQIAEIEKQTKEQSQ R D I Q R Q 1 1 0 1 0 2 1 1 0 3 1 0 1 0 1 2 0 0 0 0 0 0 15 0 1656.8505 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2009 2023 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00010639 63.091 2 1.2567 1.2857 NaN 1 Median 1.2567 1.2857 NaN 1 0 Median NaN NaN NaN 0 0 Median 55040000 38527000 16513000 55040000 38527000 16513000 0 0 0 1836 1854 1888 4905;4906 7669;7670;7671;7672 7670 1707 4 DIILQSNPLLEAFGNAK ISRVSGGGTKVQHVKDIILQSNPLLEAFGN ILQSNPLLEAFGNAKTVRNNNSSRFGKYFE K D I A K T 2 0 2 1 0 1 1 1 0 2 3 1 0 1 1 1 0 0 0 0 0 0 17 0 1841.9887 Q4KMR3;Q12965;Q6ZNI9;O00160;B0I1T1;Q4LE34;Q14779;B4DVP3;Q92827 Q4KMR3 144 160 MYO1E;FLJ00395;MYO1F;MYO1F variant protein Unconventional myosin-Ie;Unconventional myosin-If yes no 2 1.0969E-12 118.48 2 0.91674 0.9114 3.9945 2 Median 0.91674 0.9114 3.9945 2 0 Median NaN NaN NaN 0 0 Median 50830000 26159000 24671000 50830000 26159000 24671000 0 0 0 1837 1703 1889 4907;4908 7673;7674;7675;7676 7676 4 DIINEEEVQFLK GDAFPELKKDPDMVKDIINEEEVQFLKTLS MVKDIINEEEVQFLKTLSRGRRILDRKIQS K D I L K T 0 0 1 1 0 1 3 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1475.7508 P49588 P49588 373 384 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 7.8233E-38 167.93 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1838 1583 1890 4909 7677 7677 1 DIINNTSLAELEK RLLDTKLMASTQPFKDIINNTSLAELEKRL FKDIINNTSLAELEKRLKETPFNPPKVESA K D I E K R 1 0 2 1 0 0 2 0 0 2 2 1 0 0 0 1 1 0 0 0 0 0 13 0 1458.7566 O95453;H3BRK1;B3KN69 O95453 336 348 PARN Poly(A)-specific ribonuclease PARN yes no 2 0.00063265 82.171 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1839 1426 1891 4910 7678 7678 1 DIISDTSGDFRK INRVYKEMYKTDLEKDIISDTSGDFRKLMV LEKDIISDTSGDFRKLMVALAKGRRAEDGS K D I R K L 0 1 0 3 0 0 0 1 0 2 0 1 0 1 0 2 1 0 0 0 0 0 12 1 1352.6572 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YKS4;H0YM50;A6NMY6;H0YNP5;H0YNA0;H0YN28;H0YL33;B3KRQ1;H0YN52 V9HW65 158 169 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2 0.00033416 78.655 1 1.1886 1.3702 NaN 1 Median 1.1886 1.3702 NaN 1 0 Median NaN NaN NaN 0 0 Median 28743000 12555000 16188000 28743000 12555000 16188000 0 0 0 1840 193 1892 4911 7679;7680 7679 2 DIISIAEDEDLR HLKKPGGFDISLFYRDIISIAEDEDLRVHF FYRDIISIAEDEDLRVHFEESSKLEDLLRK R D I L R V 1 1 0 3 0 0 2 0 0 3 1 0 0 0 0 1 0 0 0 0 0 0 12 0 1387.6831 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 219 230 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 7.8154E-13 132.78 3 2 0.34165 0.33926 32.91 4 Median 0.38745 0.45188 1.5315 2 0 Median 0.29828 0.25562 1.0229 2 0 Median 537100000 389760000 147340000 483610000 348620000 134990000 53486000 41138000 12348000 1841 82 1893 4912;4913;4914;4915;4916 7681;7682;7683;7684;7685;7686;7687;7688;7689;7690 7684 10 DIISIAEDEDLRVHFEESSK HLKKPGGFDISLFYRDIISIAEDEDLRVHF AEDEDLRVHFEESSKLEDLLRKVRAKETRK R D I S K L 1 1 0 3 0 0 4 0 1 3 1 1 0 1 0 3 0 0 0 1 0 0 20 1 2331.123 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 219 238 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.0025108 28.083 1 1 0.33764 0.28354 NaN 1 Median NaN NaN NaN 0 0 Median 0.33764 0.28354 NaN 1 0 Median 4846600 3499600 1347000 0 0 0 4846600 3499600 1347000 1842 82 1894 4917;4918 7691;7692 7692 2 DIIVEFIK FLCLTLKMLQIQPEKDIIVEFIKNEDFKYV LQIQPEKDIIVEFIKNEDFKYVRMLGALYM K D I I K N 0 0 0 1 0 0 1 0 0 3 0 1 0 1 0 0 0 0 0 1 0 0 8 0 975.56408 Q8NAV1 Q8NAV1 85 92 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2 0.013465 65.252 2 1.2795 1.287 10.309 2 Median 1.2795 1.287 10.309 2 0 Median NaN NaN NaN 0 0 Median 18168000 8593900 9574200 18168000 8593900 9574200 0 0 0 1843 1917 1895 4919;4920 7693;7694 7693 2 DIIVIGNDITYR AWKMTFKSPEYPEGRDIIVIGNDITYRIGS EGRDIIVIGNDITYRIGSFGPQEDLLFLRA R D I Y R I 0 1 1 2 0 0 0 1 0 4 0 0 0 0 0 0 1 0 1 1 0 0 12 0 1390.7456 A0A024R0Y2;B2ZZ90;Q13085;Q7Z5W8;Q59FY4 A0A024R0Y2 1598 1609 hCG_30204;ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.0010164 73.067 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1844 60 1896 4921;4922;4923;4924 7695;7696;7697;7698 7696 4 DIKPENLLLGLK ADALMYCHGKKVIHRDIKPENLLLGLKGEL IHRDIKPENLLLGLKGELKIADFGWSVHAP R D I L K G 0 0 1 1 0 0 1 1 0 1 4 2 0 0 1 0 0 0 0 0 0 0 12 1 1351.8075 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 Q96GD4 200 211 AURKB Aurora kinase B no no 2;3 0.0012229 100.55 4 3 1.1138 1.3185 17.084 7 Median 1.1067 1.2801 2.5226 4 0 Median 2.1291 1.806 7.2683 3 0 Plateau 715170000 306670000 408500000 491230000 232200000 259020000 223950000 74470000 149480000 1845 881;1967 1897 4925;4926;4927;4928;4929;4930;4931 7699;7700;7701;7702;7703;7704;7705;7706;7707 7703 9 DIKPENLLLGSAGELK ANALSYCHSKRVIHRDIKPENLLLGSAGEL IKPENLLLGSAGELKIADFGWSVHAPSSRR R D I L K I 1 0 1 1 0 0 2 2 0 1 4 2 0 0 1 1 0 0 0 0 0 0 16 1 1695.9407 O14965;B4DX16;A3KFJ0;B2R6Z3;Q5QPD4 O14965 256 271 AURKA Aurora kinase A yes no 2;3 0.012662 34.179 1 2 1.1187 1.1539 9.1945 3 Plateau 1.0103 1.1539 NaN 1 0 Median 1.2011 1.0362 9.5884 2 0 Median 24659000 11245000 13414000 14298000 6319200 7979200 10360000 4925500 5434900 1846 1369 1898 4932;4933;4934 7708;7709;7710 7708 3 DILADLIPK VLAARHASASSTNLKDILADLIPKEQARIK SSTNLKDILADLIPKEQARIKTFRQQHGKT K D I P K E 1 0 0 2 0 0 0 0 0 2 2 1 0 0 1 0 0 0 0 0 0 0 9 0 996.58555 B4DJV2;A0A024RB75;O75390;F8W0J2;F8VP03;F8VWQ5;F8VU34;F8VR34;F8VTT8;F8W4S1;F8W031 B4DJV2 22 30 CS Citrate synthase;Citrate synthase, mitochondrial yes no 2 0.027097 47.198 2 2.9033 3.0038 41.486 2 Median 2.9033 3.0038 41.486 2 0 Median NaN NaN NaN 0 0 Median 9704900 2752700 6952100 9704900 2752700 6952100 0 0 0 1847 326 1899 4935;4936 7711;7712 7712 2 DILAVLTMK QVVLQDLDKKENGLRDILAVLTMKRDGSLH KENGLRDILAVLTMKRDGSLHVTCTDQETG R D I M K R 1 0 0 1 0 0 0 0 0 1 2 1 1 0 0 0 1 0 0 1 0 0 9 0 1002.5784 Q0VDF9 Q0VDF9 475 483 HSPA14 Heat shock 70 kDa protein 14 yes yes 2 0.0031501 66.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1848 1697 1900 4937 7713 7713 1530 1 DILCGAADEVLAVLK VLLSFIQAALGDQPRDILCGAADEVLAVLK DILCGAADEVLAVLKNEKLRDKERRKEIDL R D I L K N 3 0 0 2 1 0 1 1 0 1 3 1 0 0 0 0 0 0 0 2 0 0 15 0 1585.8385 O75643 O75643 130 144 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.033051 40.015 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21877000 21877000 0 21877000 21877000 0 0 0 0 1849 1411 1901 4938 7714 7714 1 DILDEEK NICQKLSPDGGKIPKDILDEEKFNVELIVQ PDGGKIPKDILDEEKFNVELIVQCIRLSEM K D I E K F 0 0 0 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 860.41273 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1276 1282 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.03153 66.993 2 0.99976 1.09 1.4922 2 Median 0.99976 1.09 1.4922 2 0 Median NaN NaN NaN 0 0 Median 78406000 38955000 39450000 78406000 38955000 39450000 0 0 0 1850 897 1902 4939;4940 7715;7716 7716 2 DILELGGPEGDAASGTISK ______________________________ LGGPEGDAASGTISKKDIINPDKKKSKKSS R D I S K K 2 0 0 2 0 0 2 4 0 2 2 1 0 0 1 2 1 0 0 0 0 0 19 0 1828.9054 B4DQG8;Q9NPF5;Q5TG40;B4DTH3;B4DEF2;B4DTU6;Q5TG38;Q5TG39;Q5TG36;B4DU03 B4DQG8 9 27 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 5.797E-06 69.716 1 2 1.2329 0.97692 20.193 3 Median 0.73321 0.7573 NaN 1 0 Median 1.3116 1.0499 10.192 2 0 Median 27605000 15955000 11650000 18408000 11615000 6793200 9196500 4339400 4857000 1851 1024 1903 4941;4942;4943 7717;7718;7719 7717 2 DILETHLR VCVNLMKALKMSPYKDILETHLREKITAQS LKMSPYKDILETHLREKITAQSIEELCAVN K D I L R E 0 1 0 1 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 995.53999 P78527 P78527 1413 1420 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0075008 82.671 1 2 0.3191 0.26171 50.183 3 Median 0.54651 0.62249 NaN 1 0 Median 0.31868 0.26101 0.37915 2 0 Median 131710000 84828000 46880000 106080000 65392000 40688000 25627000 19436000 6191500 1852 1665 1904 4944;4945;4946 7720;7721;7722;7723 7721 4 DILHATFEESLDK NTKVKGPFVTWQVVRDILHATFEESLDKTS VRDILHATFEESLDKTSHSVGRRARYIVKN R D I D K T 1 0 0 2 0 0 2 0 1 1 2 1 0 1 0 1 1 0 0 0 0 0 13 0 1516.7409 Q6AHZ7;Q12789;Q6AWA4;H3BRD0 Q6AHZ7 1299 1311 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0039328 63.32 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8994600 8994600 0 8994600 8994600 0 0 0 0 1853 1699 1905 4947 7724 7724 1 DILIQYDR YYQKYVDEASKKEIKDILIQYDRTLLVADP ASKKEIKDILIQYDRTLLVADPRRCESKKF K D I D R T 0 1 0 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1034.5397 P62249;M0R210;A0A087WZ27 P62249 110 117 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 0.00097085 121.99 2 2 1.0319 1.177 29.101 3 Plateau 1.0319 1.1772 NaN 1 0 Median 0.86647 0.71125 0.9204 2 0 Median 234400000 163540000 70864000 204250000 147880000 56371000 30152000 15658000 14494000 1854 1636 1906 4948;4949;4950;4951 7725;7726;7727;7728;7729;7730;7731;7732;7733;7734;7735;7736;7737;7738;7739 7726 15 DILLQGLK KLLDYTEKPLYENLRDILLQGLKAIGSKDD PLYENLRDILLQGLKAIGSKDDGKLDLSVV R D I L K A 0 0 0 1 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 8 0 898.54877 A8K245;Q99986;H0YJ50;H0YJJ9 A8K245 322 329 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0093492 78.616 3 1.4664 1.4866 NaN 1 Median 1.4664 1.4866 NaN 1 0 Median NaN NaN NaN 0 0 Median 39695000 11549000 28146000 39695000 11549000 28146000 0 0 0 1855 707 1907 4952;4953;4954 7740;7741;7742;7743;7744 7741 5 DILLQQQQQLGHGGPEAAPR AAASAAAKPPPLSAKDILLQQQQQLGHGGP QQQQLGHGGPEAAPRAPQALERYPLAAAAE K D I P R A 2 1 0 1 0 5 1 3 1 1 3 0 0 0 2 0 0 0 0 0 0 0 20 0 2155.1134 Q7Z5L9 Q7Z5L9 90 109 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes yes 3 3.4697E-05 43.12 1 1.4292 1.4414 NaN 1 Median 1.4292 1.4414 NaN 1 0 Median NaN NaN NaN 0 0 Median 9409600 5543200 3866500 9409600 5543200 3866500 0 0 0 1856 1880 1908 4955 7745 7745 1 DILLRPELEELR DHTVCHLLFANQTEKDILLRPELEELRNKH TEKDILLRPELEELRNKHSARFKLWYTLDR K D I L R N 0 2 0 1 0 0 3 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 12 1 1494.8406 A0A024R4X0;P00387;Q6ZVI6 A0A024R4X0 205 216 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 2;3 0.0056414 52.725 3 1 1.0719 1.2223 33.434 4 Linear 1.0957 1.2449 21.2 3 0 Plateau 0.63726 0.57633 NaN 1 0 Median 74127000 37361000 36766000 70588000 35023000 35565000 3539200 2338100 1201100 1857 164 1909 4956;4957;4958;4959 7746;7747;7748;7749 7747 3 DILLVNDHLLNFVR IRHDVIVSIVTAAKKDILLVNDHLLNFVRE KDILLVNDHLLNFVRERTLDKRWRVRKEAM K D I V R E 0 1 2 2 0 0 0 0 1 1 4 0 0 1 0 0 0 0 0 2 0 0 14 0 1679.9359 Q9NTI5;B7Z5S1 Q9NTI5 381 394 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2;3 1.0251E-05 95.631 2 3 0.52284 0.53346 22.718 5 Median 0.57803 0.58908 14.026 2 0 Median 0.46993 0.41166 22.922 3 0 Median 17082000 10787000 6295100 12319000 7342200 4976600 4763300 3444700 1318500 1858 2069 1910 4960;4961;4962;4963;4964 7750;7751;7752;7753;7754;7755;7756 7752 7 DILPCLDGYLK WSIYIDRHVMQPYYKDILPCLDGYLKTSAL PYYKDILPCLDGYLKTSALSDETKNNWEVS K D I L K T 0 0 0 2 1 0 0 1 0 1 3 1 0 0 1 0 0 0 1 0 0 0 11 0 1305.6639 P78527;B4DL41 P78527 791 801 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.00046386 84.213 2 2 0.44279 0.40101 55.603 4 Median 0.60845 0.65697 5.1717 2 0 Median 0.3175 0.25116 1.5337 2 0 Median 117010000 77018000 39994000 80181000 48942000 31239000 36831000 28076000 8755300 1859 1665 1911 4965;4966;4967;4968 7757;7758;7759;7760;7761;7762 7758 6 DILQNVFK AAWNKEDFPWSGKVKDILQNVFKLEKFRPL PWSGKVKDILQNVFKLEKFRPLQLETINVT K D I F K L 0 0 1 1 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 975.53893 A0A024RAV2;P46063;F5H2L2;F8WA66;F8WD97;F5H4P4;F5H3W0 A0A024RAV2 81 88 RECQL ATP-dependent DNA helicase Q1 yes no 2 0.011674 69.383 2 2 0.94287 0.80371 15.278 3 Median 0.94287 0.95838 NaN 1 0 Median 0.91549 0.75377 9.0739 2 0 Median 21838000 7753100 14085000 17562000 5619200 11943000 4276100 2133800 2142300 1860 314 1912 4969;4970;4971;4972 7763;7764;7765;7766;7767;7768 7765 6 DILTAIAADLCK QQLEALRRMVQEREKDILTAIAADLCKSEF REKDILTAIAADLCKSEFNVYSQEVITVLG K D I C K S 3 0 0 2 1 0 0 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1302.6853 J3QRD1;Q59H65;P51648;J3QKK9;K7EN73;J3KTG1;C9JGJ2;I3L0X1 J3QRD1 40 51 ALDH3A2 Fatty aldehyde dehydrogenase yes no 2 2.3371E-08 120.09 2 1.369 1.3715 2.1915 2 Median 1.369 1.3715 2.1915 2 0 Median NaN NaN NaN 0 0 Median 21437000 9541000 11896000 21437000 9541000 11896000 0 0 0 1861 1338 1913 4973;4974 7769;7770;7771;7772 7771 4 DILVATDVAGR EQREFALSNLKAGAKDILVATDVAGRGIDI AGAKDILVATDVAGRGIDIQDVSMVVNYDM K D I G R G 2 1 0 2 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1128.6139 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 696 706 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 2.8475E-06 111.61 2 1 0.79646 0.75149 19.734 2 Median 0.8414 0.86402 NaN 1 0 Median 0.75392 0.65361 NaN 1 0 Median 36008000 12145000 23863000 33947000 11052000 22895000 2060600 1092700 967900 1862 63 1914 4975;4976;4977 7773;7774;7775;7776 7774 4 DILVEVNHPFIVK ATLKVRDRVRTKMERDILVEVNHPFIVKLH ERDILVEVNHPFIVKLHYAFQTEGKLYLIL R D I V K L 0 0 1 1 0 0 1 0 1 2 1 1 0 1 1 0 0 0 0 3 0 0 13 0 1521.8555 B4DKZ2;B4DG22;B7ZB17;P51812;B1AXG1;B1AXG2;Q9UK32 B4DKZ2 91 103 RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 yes no 2 9.3779E-05 93.096 1 1.8254 1.9017 NaN 1 Median 1.8254 1.9017 NaN 1 0 Median NaN NaN NaN 0 0 Median 19084000 3556300 15528000 19084000 3556300 15528000 0 0 0 1863 971 1915 4978 7777 7777 1 DINAVLIDMER SALNLAKNIGLTKARDINAVLIDMERQGDV TKARDINAVLIDMERQGDVYRQGTTPPIWH R D I E R Q 1 1 1 2 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 1 0 0 11 0 1287.6493 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 329 339 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.023018 64.374 1 2.8869 2.9069 NaN 1 Median 2.8869 2.9069 NaN 1 0 Median NaN NaN NaN 0 0 Median 10769000 2159200 8609700 10769000 2159200 8609700 0 0 0 1864 5 1916 4979 7778 7778 2 0 DINAYNCEEPTEK ALSIDSVEDHLAWSKDINAYNCEEPTEKLP SKDINAYNCEEPTEKLPFPIIDDRNRELAI K D I E K L 1 0 2 1 1 0 3 0 0 1 0 1 0 0 1 0 1 0 1 0 0 0 13 0 1581.6617 V9HWC7;P30041 V9HWC7 85 97 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 7.5789E-09 108.35 2 2 5.2525 4.8717 58.468 2 Median 7.0984 7.366 NaN 1 0 Median 3.8867 3.222 NaN 1 0 Median 29785000 2855100 26930000 25999000 2288200 23711000 3786100 566840 3219300 1865 1527 1917 4980;4981;4982;4983 7779;7780;7781;7782 7780 4 DINESDEVEVYSR PFHDVRFPPPVGYNKDINESDEVEVYSRAN NKDINESDEVEVYSRANEKEPCCWWLAKVR K D I S R A 0 1 1 2 0 0 3 0 0 1 0 0 0 0 0 2 0 0 1 2 0 0 13 0 1553.6845 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7 X5DQX7 58 70 FMR1 Fragile X mental retardation protein 1 yes no 2 2.0772E-06 110.08 2 2 1.3109 1.254 4.9491 4 Median 1.1951 1.3064 0.76029 2 0 Median 1.4504 1.2004 1.1433 2 0 Median 106320000 46685000 59633000 87084000 39041000 48043000 19234000 7643500 11591000 1866 1689 1918 4984;4985;4986;4987 7783;7784;7785;7786;7787;7788;7789;7790 7787 8 DINLQDEDWNEFNDINK NMAIPGGPKFEPLVRDINLQDEDWNEFNDI NLQDEDWNEFNDINKIIIRQPIRTEYKIAF R D I N K I 0 0 4 4 0 1 2 0 0 2 1 1 0 1 0 0 0 1 0 0 0 0 17 0 2120.9287 Q6P2Q9;I3L0J9 Q6P2Q9 285 301 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 6.6894E-05 89.959 2 1 0.77054 0.67731 12.157 3 Median 0.68718 0.69275 17.094 2 0 Median 0.85809 0.67731 NaN 1 0 Median 34532000 19258000 15274000 29182000 16467000 12715000 5350300 2790900 2559300 1867 1854 1919 4988;4989;4990 7791;7792;7793;7794 7792 4 DINLTIMLK D I L K 0 0 1 1 0 0 0 0 0 2 2 1 1 0 0 0 1 0 0 0 0 0 9 0 1059.5998 REV__A0A0U1RRM2 yes yes 2 0.044563 40.002 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 1868 2166 1920 4991 7795 7795 2010 1 DINSVAIAPNDK PILLQAQTTQRCHDKDINSVAIAPNDKLLA HDKDINSVAIAPNDKLLATGSQDRTAKLWA K D I D K L 2 0 2 2 0 0 0 0 0 2 0 1 0 0 1 1 0 0 0 1 0 0 12 0 1255.6408 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 481 492 TBL3 Transducin beta-like protein 3 no no 2 6.8459E-13 133.42 2 2 1.0532 0.99368 3.5774 4 Median 0.86711 0.97003 0.072238 2 0 Median 1.2875 1.0296 1.6893 2 0 Median 185910000 92255000 93658000 150600000 77139000 73460000 35314000 15116000 20198000 1869 1698;436 1921 4992;4993;4994;4995 7796;7797;7798;7799;7800;7801;7802;7803 7798 8 DINTDFLLVVLR IRGISHVIVDEIHERDINTDFLLVVLRDVV HERDINTDFLLVVLRDVVQAYPEVRIVLMS R D I L R D 0 1 1 2 0 0 0 0 0 1 3 0 0 1 0 0 1 0 0 2 0 0 12 0 1416.7977 Q08211;Q58F26;Q6PJK6 Q08211 517 528 DHX9 ATP-dependent RNA helicase A yes no 2 0.011691 61.78 1 3.2577 2.8034 NaN 1 Median NaN NaN NaN 0 0 Median 3.2577 2.8034 NaN 1 0 Median 7136300 2212300 4924000 0 0 0 7136300 2212300 4924000 1870 1691 1922 4996 7804 7804 0 DINTFLGTPVQK GKAMHTPKPAVGEEKDINTFLGTPVQKLDQ EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ K D I Q K L 0 0 1 1 0 1 0 1 0 1 1 1 0 1 1 0 2 0 0 1 0 0 12 0 1331.7085 P46013 P46013 1794 1805 MKI67 Antigen KI-67 yes yes 2 4.6772E-06 110.53 2 1.7282 2.0422 0.21975 2 Median 1.7282 2.0422 0.21975 2 0 Median NaN NaN NaN 0 0 Median 1186900000 447690000 739180000 1186900000 447690000 739180000 0 0 0 1871 1569 1923 4997;4998 7805;7806 7806 1 DINTFSMR NMIIQSISLLDQLDKDINTFSMRVREWYGY LLDQLDKDINTFSMRVREWYGYHFPELVKI K D I M R V 0 1 1 1 0 0 0 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 8 0 982.45422 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 181 188 NOP56 Nucleolar protein 56 yes no 2 0.0037975 81.215 3 5 0.9644 0.98715 33.108 7 Median 0.9665 1.0895 1.9637 3 0 Median 0.68255 0.57802 27.066 4 0 Median 217760000 104040000 113720000 192690000 90164000 102520000 25074000 13879000 11195000 1872 785 1924;1925 4999;5000;5001;5002;5003;5004;5005;5006 7807;7808;7809;7810;7811;7812;7813;7814;7815;7816;7817;7818 7812 617 12 DINTFVGTPVEK GKAMHTPKAAVGEEKDINTFVGTPVEKLDL EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ K D I E K L 0 0 1 1 0 0 1 1 0 1 0 1 0 1 1 0 2 0 0 2 0 0 12 0 1318.6769 P46013 P46013 1916 1927 MKI67 Antigen KI-67 yes yes 2 2.9606E-13 135.99 2 1.5926 1.8816 3.5091 2 Median 1.5926 1.8816 3.5091 2 0 Median NaN NaN NaN 0 0 Median 926140000 355840000 570300000 926140000 355840000 570300000 0 0 0 1873 1569 1926 5007;5008 7819;7820;7821;7822;7823;7824 7820 6 DIPGLTDTTVPR NLSVLNLVIVKKGEKDIPGLTDTTVPRRLG GEKDIPGLTDTTVPRRLGPKRASRIRKLFN K D I P R R 0 1 0 2 0 0 0 1 0 1 1 0 0 0 2 0 3 0 0 1 0 0 12 0 1283.6721 Q96DV6;A2A3R6;P62753;Q9BZU1;A2A3R5 Q96DV6 120 131 RPS6 40S ribosomal protein S6 no no 2 8.1414E-23 157.66 14 6 0.86183 0.96684 20.826 11 Median 0.8089 0.89676 15.934 7 0 Median 1.3979 1.2038 1.8047 4 0 Median 13080000000 6309400000 6770200000 10742000000 5337900000 5404500000 2337200000 971530000 1365700000 1874 649;648 1927 5009;5010;5011;5012;5013;5014;5015;5016;5017;5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028 7825;7826;7827;7828;7829;7830;7831;7832;7833;7834;7835;7836;7837;7838;7839;7840;7841;7842;7843;7844;7845;7846;7847;7848;7849;7850;7851;7852;7853;7854;7855;7856;7857;7858;7859;7860;7861;7862;7863;7864;7865;7866;7867;7868;7869;7870;7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883;7884;7885;7886 7876 62 DIPSLVVAGQK HPVSTSENARTQGLRDIPSLVVAGQKGTKY QGLRDIPSLVVAGQKGTKYLCASSVGGETL R D I Q K G 1 0 0 1 0 1 0 1 0 1 1 1 0 0 1 1 0 0 0 2 0 0 11 0 1125.6394 Q5VWN6 Q5VWN6 1109 1119 FAM208B Protein FAM208B yes yes 2 0.0036929 66.621 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3001300 3001300 0 3001300 3001300 0 0 0 0 1875 1833 1928 5029;5030 7887;7888 7888 2 DIPVTIHNLEEYLR TLPGFPNIELKKGGKDIPVTIHNLEEYLRL KDIPVTIHNLEEYLRLVIFWALNEGVSRQF K D I L R L 0 1 1 1 0 0 2 0 1 2 2 0 0 0 1 0 1 0 1 1 0 0 14 0 1710.8941 Q14669;H7C2Y1 Q14669 1810 1823 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 2 0.0042853 59.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1989300 0 1989300 0 0 0 1989300 0 1989300 1876 1736 1929 5031 7889 7889 1 DIQDSLTVSNEVQTAK VHYYEDGNVQLVSHKDIQDSLTVSNEVQTA IQDSLTVSNEVQTAKEFIKIVEAAENEYQT K D I A K E 1 0 1 2 0 2 1 0 0 1 1 1 0 0 0 2 2 0 0 2 0 0 16 0 1746.8636 Q53GE2;Q53GC7;A4D0V4;P47755;B4DE01 Q53GE2 211 226 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 2 3.5048E-05 92.295 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1877 659 1930 5032 7890 7890 1 DIQEESTFSSR LLSPARLYAIAAKEKDIQEESTFSSRKISN AKEKDIQEESTFSSRKISNQFDWALMRLDL K D I S R K 0 1 0 1 0 1 2 0 0 1 0 0 0 1 0 3 1 0 0 0 0 0 11 0 1297.5786 E5KNY5;P42704;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 67 77 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 4.4729E-10 130.94 2 2 1.6172 1.5242 32.778 4 Median 1.8858 2.0202 3.691 2 0 Median 1.3399 1.148 3.9368 2 0 Median 78378000 30819000 47559000 73658000 28745000 44913000 4720200 2074000 2646200 1878 1207 1931 5033;5034;5035;5036 7891;7892;7893;7894;7895;7896;7897;7898 7891 8 DIQGPGNPQCFSLR ______________________________ RDIQGPGNPQCFSLRTEQGTVLIGSEHGLI R D I L R T 0 1 1 1 1 2 0 2 0 1 1 0 0 1 2 1 0 0 0 0 0 0 14 0 1587.7464 Q8N516;Q4LE38;O95163 Q8N516 14 27 IKBKAP;IKBKAP variant protein Elongator complex protein 1 yes no 2 0.0029413 58.172 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1879 1419 1932 5037 7899 7899 1 DIQSCTVEVHFQK SKKLSVLIHNSDEHKDIQSCTVEVHFQKII HKDIQSCTVEVHFQKIIDKEGDDYEVIPNS K D I Q K I 0 0 0 1 1 2 1 0 1 1 0 1 0 1 0 1 1 0 0 2 0 0 13 0 1589.7508 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 154 166 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein no no 2;3 1.435E-18 138.22 4 4 1.238 1.1564 26.686 8 Median 0.75497 0.82748 12.133 4 0 Median 1.818 1.4781 6.0021 4 0 Linear 279050000 133870000 145190000 187250000 101170000 86079000 91802000 32693000 59109000 1880 2070;1136 1933 5038;5039;5040;5041;5042;5043;5044;5045 7900;7901;7902;7903;7904;7905;7906;7907;7908;7909;7910;7911;7912;7913;7914;7915;7916 7906 17 DISEASVFDAYVLPK KKFVIRNIVEAAAVRDISEASVFDAYVLPK DISEASVFDAYVLPKLYVKLHYCVSCAIHS R D I P K L 2 0 0 2 0 0 1 0 0 1 1 1 0 1 1 2 0 0 1 2 0 0 15 0 1652.8298 A0A024RB14;P62854;Q75MH1 A0A024RB14 52 66 RPS26 40S ribosomal protein S26 yes no 2 6.1097E-99 229 4 2 0.71317 0.84695 27.635 6 Median 0.70725 0.78462 11.046 4 0 Median 1.4221 1.2839 4.2517 2 0 Median 6755300000 3469100000 3286200000 3964800000 2312900000 1651900000 2790400000 1156100000 1634300000 1881 319 1934 5046;5047;5048;5049;5050;5051 7917;7918;7919;7920;7921;7922;7923;7924;7925;7926;7927;7928;7929;7930;7931;7932;7933;7934 7923 18 DISEVIALGVPNPR AAPDKRSKLQRNENRDISEVIALGVPNPRT RDISEVIALGVPNPRTSNEVQYDQRLFNQS R D I P R T 1 1 1 1 0 0 1 1 0 2 1 0 0 0 2 1 0 0 0 2 0 0 14 0 1478.8093 B7Z9X2;B4DY36;A0A024R6E3;Q6I9S2;Q13573;G3V4X8;G3V3A4;B4DEG7;Q9ULA6 B7Z9X2 312 325 SNW1 SNW domain-containing protein 1 yes no 2 7.9997E-06 83.869 1 1.3237 1.3464 NaN 1 Median 1.3237 1.3464 NaN 1 0 Median NaN NaN NaN 0 0 Median 7271900 3559800 3712100 7271900 3559800 3712100 0 0 0 1882 203 1935 5052 7935 7935 0 DISLSDYK PNFKATAVMPDGQFKDISLSDYKGKYVVFF MPDGQFKDISLSDYKGKYVVFFFYPLDFTF K D I Y K G 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2 0 0 1 0 0 0 8 0 939.45493 Q06830;A0A0A0MSI0 Q06830 28 35 PRDX1 Peroxiredoxin-1 yes no 2 0.0087497 77.282 2 1 3.0816 3.4701 28.771 3 Median 3.1192 3.5135 1.7566 2 0 Median 2.7075 2.1356 NaN 1 0 Median 139000000 32342000 106660000 133540000 30700000 102840000 5457900 1641800 3816200 1883 1690 1936 5053;5054;5055 7936;7937;7938;7939 7938 4 DISNCWAPK RVALNSREPHMCLVRDISNCWAPKVETAIT HMCLVRDISNCWAPKVETAITKVRTPVMNS R D I P K V 1 0 1 1 1 0 0 0 0 1 0 1 0 0 1 1 0 1 0 0 0 0 9 0 1089.4913 Q15061 Q15061 376 384 WDR43 WD repeat-containing protein 43 yes yes 2 0.0011746 88.942 2 2 0.9609 0.86654 6.9135 4 Median 0.79434 0.81887 0.33651 2 0 Median 1.1529 0.92246 1.1796 2 0 Median 41600000 23489000 18111000 32209000 19551000 12658000 9391100 3937600 5453500 1884 1752 1937 5056;5057;5058;5059 7940;7941;7942;7943;7944;7945;7946 7942 7 DISNTLIMLADK SGNVEAKVVCFYRRRDISNTLIMLADKHAK RRRDISNTLIMLADKHAKEIEEESETTVEA R D I D K H 1 0 1 2 0 0 0 0 0 2 2 1 1 0 0 1 1 0 0 0 0 0 12 0 1332.6959 E7EQY4;E7EV10;Q9BTC8;E9PCS8;Q53SC0;E9PF88 E7EQY4 50 61 MTA3;tmp_locus_6 Metastasis-associated protein MTA3 yes no 2 0.0078225 49.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3144900 3144900 0 3144900 3144900 0 0 0 0 1885 1221 1938 5060 7947 7947 930 1 DISQLQIDLTGALGK YYEYRKAKDQLDIAKDISQLQIDLTGALGK DISQLQIDLTGALGKRTRFQENYVAQLILD K D I G K R 1 0 0 2 0 2 0 2 0 2 3 1 0 0 0 1 1 0 0 0 0 0 15 0 1570.8566 B4DRC7;Q6P3X3 B4DRC7 209 223 TTC27 Tetratricopeptide repeat protein 27 yes no 2 0.002567 62.694 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4599200 0 4599200 4599200 0 4599200 0 0 0 1886 1026 1939 5061 7948 7948 1 DISSSLNSLADSNAR NGNVEAKVVCLFRRRDISSSLNSLADSNAR DISSSLNSLADSNAREFEEESKQPGVSEQQ R D I A R E 2 1 2 2 0 0 0 0 0 1 2 0 0 0 0 5 0 0 0 0 0 0 15 0 1548.738 A0A024R534;O94776 A0A024R534 50 64 MTA2 Metastasis-associated protein MTA2 yes no 2 1.3635E-38 169.65 2 2 1.1417 1.1197 30.255 4 Median 0.76797 0.87479 1.0213 2 0 Median 1.7176 1.4737 4.9696 2 0 Median 276280000 138980000 137300000 217450000 116620000 100830000 58828000 22356000 36472000 1887 168 1940 5062;5063;5064;5065 7949;7950;7951;7952;7953;7954;7955;7956;7957 7952 9 DISSTLIALADK NGNVEAKVVCFYRRRDISSTLIALADKHAT RRRDISSTLIALADKHATLSVCYKAGPGAD R D I D K H 2 0 0 2 0 0 0 0 0 2 2 1 0 0 0 2 1 0 0 0 0 0 12 0 1245.6816 E7ESY4;Q13330;H7C3F3 E7ESY4 50 61 MTA1 Metastasis-associated protein MTA1 yes no 2 0.0001401 93.442 2 1 0.90044 0.91987 31.27 3 Median 0.86688 0.88697 5.1511 2 0 Median 1.9225 1.5189 NaN 1 0 Median 54901000 29582000 25319000 49681000 27910000 21771000 5219800 1672000 3547800 1888 1223 1941 5066;5067;5068 7958;7959;7960;7961;7962;7963 7958 6 DISTILDEER GRGKDISTITGHRGKDISTILDEERKENKR GHRGKDISTILDEERKENKRPQRAAAARRK K D I E R K 0 1 0 2 0 0 2 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1189.5826 Q96T23;H0YDG9 Q96T23 1062 1071 RSF1 Remodeling and spacing factor 1 yes no 2 0.023936 52.579 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1889 1991 1942 5069 7964 7964 1 DISTILDEERK GRGKDISTITGHRGKDISTILDEERKENKR HRGKDISTILDEERKENKRPQRAAAARRKK K D I R K E 0 1 0 2 0 0 2 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 11 1 1317.6776 Q96T23;H0YDG9 Q96T23 1062 1072 RSF1 Remodeling and spacing factor 1 yes no 2 3.9715E-12 140.16 2 2 0.59384 0.59363 29.027 4 Median 0.40015 0.47101 6.3979 2 0 Median 0.89639 0.76767 10.035 2 0 Median 121470000 78414000 43060000 94560000 64249000 30311000 26914000 14165000 12749000 1890 1991 1943 5070;5071;5072;5073 7965;7966;7967;7968;7969;7970;7971;7972 7968 8 DISTITGHR DDIKEADGGGVGRGKDISTITGHRGKDIST GVGRGKDISTITGHRGKDISTILDEERKEN K D I H R G 0 1 0 1 0 0 0 1 1 2 0 0 0 0 0 1 2 0 0 0 0 0 9 0 998.51451 Q96T23;H0YDG9 Q96T23 1051 1059 RSF1 Remodeling and spacing factor 1 yes no 2 6.477E-06 131.03 1 1 0.65172 0.64599 24.063 2 Median 0.4716 0.54492 NaN 1 0 Median 0.90061 0.76582 NaN 1 0 Median 61342000 41261000 20081000 56012000 38471000 17541000 5329700 2790400 2539300 1891 1991 1944 5074;5075 7973;7974;7975 7973 3 DISTTLNADEAVAR RIPAVKERIAKFFGKDISTTLNADEAVARG KDISTTLNADEAVARGCALQCAILSPAFKV K D I A R G 3 1 1 2 0 0 1 0 0 1 1 0 0 0 0 1 2 0 0 1 0 0 14 0 1474.7264 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;A0A0A0MSM0;B4DY72;B3KNM0;Q53ZP9;A0A140VKE7;B4DZR0;O95757;D6RJ96;E9PDE8;B4DXT2 A0A024RDQ0 361 374 HSPH1;HSPA4L Heat shock protein 105 kDa;Heat shock 70 kDa protein 4L no no 2 1.2465E-09 120.77 2 1 1.8767 2.0504 8.8126 2 Median 1.8767 2.0504 8.8126 2 0 Median NaN NaN NaN 0 0 Median 94718000 34004000 60714000 92327000 31613000 60714000 2391300 2391300 0 1892 390;624 1945 5076;5077;5078 7976;7977;7978;7979 7976 4 DITAEFLVK LHQQYKEASEVKPPRDITAEFLVKSKHRDL EVKPPRDITAEFLVKSKHRDLTALCKEYDE R D I V K S 1 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 9 0 1034.5648 A8K2R3;O60341 A8K2R3 351 359 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.038591 42.599 1 0.99204 1.0021 NaN 1 Median 0.99204 1.0021 NaN 1 0 Median NaN NaN NaN 0 0 Median 10096000 5078000 5018200 10096000 5078000 5018200 0 0 0 1893 711 1946 5079 7980 7980 1 DITLFHAMDTLQR IRQPSLHMSAAAASRDITLFHAMDTLQRNG SRDITLFHAMDTLQRNGYDLAKAMSTLVPQ R D I Q R N 1 1 0 2 0 1 0 0 1 1 2 0 1 1 0 0 2 0 0 0 0 0 13 0 1559.7766 A0A024R534;O94776 A0A024R534 228 240 MTA2 Metastasis-associated protein MTA2 yes no 2;3 0.00012863 79.659 3 4 1.5923 1.3732 20.208 4 Median NaN NaN NaN 0 0 Median 1.5923 1.3732 20.208 4 0 Median 36986000 5892600 31094000 21391000 0 21391000 15595000 5892600 9702200 1894 168 1947;1948 5080;5081;5082;5083;5084;5085;5086 7981;7982;7983;7984;7985;7986;7987;7988;7989;7990;7991 7991 142 11 DITNVSLYPVVK TTPPETQQSPHLSLKDITNVSLYPVVKIRR SLKDITNVSLYPVVKIRRLSLSPKKNKASP K D I V K I 0 0 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 3 0 0 12 0 1346.7446 B5BUA4;Q5FBB7;A0A024R2J4 B5BUA4 443 454 SGOL1 Shugoshin-like 1 yes no 2 1.4464E-05 105.98 2 2 1.1031 1.033 8.077 4 Median 0.91115 0.95355 9.1051 2 0 Median 1.3117 1.0595 1.3634 2 0 Median 75790000 37871000 37919000 53274000 27627000 25647000 22516000 10244000 12273000 1895 1075 1949 5087;5088;5089;5090 7992;7993;7994;7995;7996 7994 5 DITSSIHFEAYR YLRDLLIRTHMQNIKDITSSIHFEAYRVKR NIKDITSSIHFEAYRVKRLNEGSSAMANGM K D I Y R V 1 1 0 1 0 0 1 0 1 2 0 0 0 1 0 2 1 0 1 0 0 0 12 0 1437.6888 A0A0S2Z5W9;A0A024R8Q0;A0A0S2Z5A5;A0A024R8V0;Q9UHD8;A2VCQ5 A0A0S2Z5W9 317 328 SEPT9;MAFK Septin-9 yes no 2 0.019112 51.927 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1896 254 1950 5091;5092 7997;7998 7997 2 DIVALMVR FQPDLSKFKMQSLDKDIVALMVRRAYDIAG KMQSLDKDIVALMVRRAYDIAGSTKDVKVF K D I V R R 1 1 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 2 0 0 8 0 915.52117 P11388 P11388 234 241 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0090389 76.035 5 3 0.9696 0.89468 46.714 8 Median 1.3519 1.566 55.929 5 0 Linear 1.4001 1.1447 36.571 3 0 Median 536630000 255660000 280970000 469830000 224480000 245350000 66795000 31179000 35616000 1897 1471 1951;1952 5093;5094;5095;5096;5097;5098;5099;5100 7999;8000;8001;8002;8003;8004;8005;8006;8007;8008;8009;8010 8009 1192 12 DIVEELSALK PTSTRRRPKTPLGKRDIVEELSALKQLTQT PLGKRDIVEELSALKQLTQTTHTDKVPGDE R D I L K Q 1 0 0 1 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1115.6074 P46013 P46013 2129 2138 MKI67 Antigen KI-67 yes yes 2 1.874E-08 122.13 2 2 1.9811 2.2161 16.382 3 Median 1.973 2.1604 3.5994 2 0 Median 3.4348 2.8594 NaN 1 0 Median 203590000 48624000 154970000 113640000 37191000 76450000 89950000 11433000 78517000 1898 1569 1953 5101;5102;5103;5104 8011;8012;8013;8014;8015;8016;8017 8013 7 DIVINANPASPPLSLLVLHR LDLNSVLGKDYGALKDIVINANPASPPLSL ANPASPPLSLLVLHRLLCEHFRVLSTVHTH K D I H R L 2 1 2 1 0 0 0 0 1 2 4 0 0 0 3 2 0 0 0 2 0 0 20 0 2138.2212 B2R7M3;A0A024QZY1;Q13155;A8MU58;F8W950 B2R7M3 121 140 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 3 2.9836E-05 44.089 2 1.6976 1.7957 1.6825 2 Median 1.6976 1.7957 1.6825 2 0 Median NaN NaN NaN 0 0 Median 49876000 18808000 31068000 49876000 18808000 31068000 0 0 0 1899 32 1954 5105;5106 8018;8019;8020;8021 8019 4 DIVISVGIYNLVQK TRKRALSRLKLKLNKDIVISVGIYNLVQKA KDIVISVGIYNLVQKALKPPPIKLYRETNE K D I Q K A 0 0 1 1 0 1 0 1 0 3 1 1 0 0 0 1 0 0 1 3 0 0 14 0 1559.8923 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 266 279 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0001464 77.379 1 0.5449 0.54993 NaN 1 Median 0.5449 0.54993 NaN 1 0 Median NaN NaN NaN 0 0 Median 8047400 4702600 3344800 8047400 4702600 3344800 0 0 0 1900 82 1955 5107 8022;8023 8022 2 DIVPGDIVEIAVGDK VYRQDRKSVQRIKAKDIVPGDIVEIAVGDK DIVPGDIVEIAVGDKVPADIRLTSIKSTTL K D I D K V 1 0 0 3 0 0 1 2 0 3 0 1 0 0 1 0 0 0 0 3 0 0 15 0 1538.8192 A0A0S2Z3L2;P16615 A0A0S2Z3L2 144 158 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 8.4103E-06 94.191 2 2.3405 2.3604 6.6302 2 Median 2.3405 2.3604 6.6302 2 0 Median NaN NaN NaN 0 0 Median 28229000 9281600 18947000 28229000 9281600 18947000 0 0 0 1901 554 1956 5108;5109 8024;8025;8026;8027 8026 4 DIVQFVPFR DGGSLRSPLGEVAIRDIVQFVPFRQFQNAP GEVAIRDIVQFVPFRQFQNAPKEALAQCVL R D I F R Q 0 1 0 1 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 2 0 0 9 0 1119.6077 A0A024R994;O75131;Q4G168;B3KWK1;B2RD40;A8K8A4;E7ENV7;B7Z370;Q96FN4;Q8IYJ1;Q96A23;O95741;Q86YQ8;Q9HCH3;Q9UBL6 A0A024R994 485 493 CPNE3;CPNE4;CPNE6;CPNE8;CPNE2;CPNE9;CPNE5;CPNE7 Copine-3;Copine-2;Copine-9;Copine-4;Copine-6;Copine-8;Copine-5;Copine-7 yes no 2 0.00052528 109.86 2 2 1.0344 0.99824 55.727 4 Median 1.5987 1.6278 8.0032 2 0 Median 0.70794 0.62306 5.5133 2 0 Median 28703000 10981000 17723000 26048000 9400200 16648000 2655000 1580400 1074600 1902 271 1957 5110;5111;5112;5113 8028;8029;8030;8031;8032;8033;8034;8035;8036 8031 9 DIVSLVPR TNIITSKELLQTKLKDIVSLVPRLRHIITV LLQTKLKDIVSLVPRLRHIITVDGKPPTWS K D I P R L 0 1 0 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 8 0 897.52837 B3KN05;B2RBE0;A0A024R497;O95573;F5GWH2 B3KN05 212 219 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.014589 62.659 2 1.1436 1.1467 NaN 1 Median 1.1436 1.1467 NaN 1 0 Median NaN NaN NaN 0 0 Median 11279000 6476600 4802900 11279000 6476600 4802900 0 0 0 1903 150 1958 5114;5115 8037;8038 8038 2 DIWLGAQRPDTLLTHVR ATQASAAFLVSLYIKDIWLGAQRPDTLLTH WLGAQRPDTLLTHVRMVCEAADDAPSSEEE K D I V R M 1 2 0 2 0 1 0 1 1 1 3 0 0 0 1 0 2 1 0 1 0 0 17 1 1990.0748 O60287 O60287 2224 2240 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 0.00043758 44.294 2 1.266 1.1175 19.394 2 Median NaN NaN NaN 0 0 Median 1.266 1.1175 19.394 2 0 Median 9477900 3942400 5535500 0 0 0 9477900 3942400 5535500 1904 1392 1959 5116;5117 8039;8040 8039 2 DKDDDEVFEK FRKLLLNRCQKEFEKDKDDDEVFEKKQKEM KEFEKDKDDDEVFEKKQKEMDEAATAEERG K D K E K K 0 0 0 4 0 0 2 0 0 0 0 2 0 1 0 0 0 0 0 1 0 0 10 1 1238.5303 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6 E7EX73 691 700 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 1.7596E-39 192.5 2 1.9436 2.2715 11.975 2 Median 1.9436 2.2715 11.975 2 0 Median NaN NaN NaN 0 0 Median 80614000 25568000 55046000 80614000 25568000 55046000 0 0 0 1905 896 1960 5118;5119 8041;8042;8043 8042 3 DKLDETGNSLK LPVKGFRSYVDMYLKDKLDETGNSLKVIHE MYLKDKLDETGNSLKVIHEQVNHRWEVCLT K D K L K V 0 0 1 2 0 0 1 1 0 0 2 2 0 0 0 1 1 0 0 0 0 0 11 1 1218.6092 P11388 P11388 277 287 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.9468E-153 289.22 2 2 1.0317 1.0403 11.367 4 Median 0.78938 0.92779 7.8389 2 0 Median 1.3062 1.1111 0.97426 2 0 Median 2409400000 1273500000 1135900000 1636800000 951740000 685110000 772530000 321750000 450790000 1906 1471 1961 5120;5121;5122;5123 8044;8045;8046;8047;8048;8049;8050;8051;8052;8053;8054 8045 11 DKLDETGVALK LPVNGFRSYVDLYVKDKLDETGVALKVIHE LYVKDKLDETGVALKVIHELANERWDVCLT K D K L K V 1 0 0 2 0 0 1 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1187.6398 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 270 280 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.0011023 92.611 2 1.0309 0.87638 4.337 2 Median NaN NaN NaN 0 0 Median 1.0309 0.87638 4.337 2 0 Median 32139000 14833000 17306000 0 0 0 32139000 14833000 17306000 1907 1679 1962 5124;5125 8055;8056;8057;8058 8057 4 DKLDGNELDLSLSDLNEVPVK ______________________________ ELDLSLSDLNEVPVKELAALPKATILDLSC R D K V K E 0 0 2 4 0 0 2 1 0 0 5 2 0 0 1 2 0 0 0 2 0 0 21 1 2312.1747 Q96AG4;I3L223 Q96AG4 13 33 LRRC59 Leucine-rich repeat-containing protein 59 yes no 3 2.496E-09 70.352 1 2 0.8555 0.72886 38.052 3 Median 1.1813 1.393 NaN 1 0 Median 0.84663 0.72083 1.568 2 0 Median 89824000 48802000 41022000 14764000 6979900 7784300 75060000 41822000 33238000 1908 1958 1963 5126;5127;5128 8059;8060;8061;8062;8063;8064;8065;8066 8065 8 DKLDILGAAETGSGK KDPELEALTLAPAIRDKLDILGAAETGSGK DKLDILGAAETGSGKTLAFAIPMIHAVLQW R D K G K T 2 0 0 2 0 0 1 3 0 1 2 2 0 0 0 1 1 0 0 0 0 0 15 1 1473.7675 B4DKV2;G3V529;Q9GZR7;Q59FS7;B4DM03 B4DKV2 136 150 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.0011909 77.912 2 0.98062 0.83794 4.8381 2 Median NaN NaN NaN 0 0 Median 0.98062 0.83794 4.8381 2 0 Median 12590000 6660300 5929400 0 0 0 12590000 6660300 5929400 1909 993 1964 5129;5130 8067;8068;8069 8069 3 DKPLPPLLAR EAPRRPSRKGLRNDKDKPLPPLLARVGGNI LRNDKDKPLPPLLARVGGNIEVLGFNARQR K D K A R V 1 1 0 1 0 0 0 0 0 0 3 1 0 0 3 0 0 0 0 0 0 0 10 1 1118.6812 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;Q659F1;Q659D0;Q6ZU36;B3KRD4;Q12873;B4DLC6;Q2TAZ1 F5GWX5 1390 1399 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.014438 67.993 2 0.70916 0.84481 5.271 2 Median 0.70916 0.84481 5.271 2 0 Median NaN NaN NaN 0 0 Median 203680000 114040000 89632000 203680000 114040000 89632000 0 0 0 1910 515;1701 1965 5131;5132 8070;8071;8072;8073 8070 4 DKYPNLQVIGGNVVTAAQAK QGNSIFQINMIKYIKDKYPNLQVIGGNVVT LQVIGGNVVTAAQAKNLIDAGVDALRVGMG K D K A K N 3 0 2 1 0 2 0 2 0 1 1 2 0 0 1 0 1 0 1 3 0 0 20 1 2085.1219 H0Y4R1;P12268;B7Z1G4 H0Y4R1 224 243 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3 3.7513E-13 89.831 2 1.4631 1.2431 3.8098 2 Median NaN NaN NaN 0 0 Median 1.4631 1.2431 3.8098 2 0 Median 30879000 11898000 18981000 0 0 0 30879000 11898000 18981000 1911 1282 1966 5133;5134 8074;8075;8076;8077 8074 4 DLAALGDK ASVQALQRKHEGFERDLAALGDKVNSLGET KHEGFERDLAALGDKVNSLGETAERLIQSH R D L D K V 2 0 0 2 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 801.42323 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1261 1268 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.042931 52.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6235700 0 6235700 6235700 0 6235700 0 0 0 1912 523 1967 5135 8078 8078 1 DLAGSIIGK DLGGPIITTQVTIPKDLAGSIIGKGGQRIK QVTIPKDLAGSIIGKGGQRIKQIRHESGAS K D L G K G 1 0 0 1 0 0 0 2 0 2 1 1 0 0 0 1 0 0 0 0 0 0 9 0 872.49673 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;B3KU16;S4R359 B4DUQ1 373 381 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 0.015433 54.776 1 1.3132 1.417 NaN 1 Median 1.3132 1.417 NaN 1 0 Median NaN NaN NaN 0 0 Median 37270000 16856000 20414000 37270000 16856000 20414000 0 0 0 1913 102 1968 5136 8079 8079 1 DLAIYYSYGDFLLGK EEGRSRSEYLNRLKKDLAIYYSYGDFLLGK DLAIYYSYGDFLLGKLMDLFPLSELVEFLE K D L G K L 1 0 0 2 0 0 0 2 0 1 3 1 0 1 0 1 0 0 3 0 0 0 15 0 1736.8661 P46087;F5GYR3 P46087 273 287 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 1.3111E-05 90.653 3 0.91632 0.93889 0.32984 2 Median 0.91632 0.93889 0.32984 2 0 Median NaN NaN NaN 0 0 Median 25766000 13232000 12534000 25766000 13232000 12534000 0 0 0 1914 1570 1969 5137;5138;5139 8080;8081;8082;8083 8083 4 DLALGLVPGDR CRRVVHFAEPGAGTKDLALGLVPGDRLVEI AGTKDLALGLVPGDRLVEINGHNVESKSRD K D L D R L 1 1 0 2 0 0 0 2 0 0 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1124.619 A0A0D9SFK2;A0A024QZ63;Q92614 A0A0D9SFK2 265 275 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.034059 48.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2935000 0 2935000 2935000 0 2935000 0 0 0 1915 12 1970 5140 8084 8084 1 DLALVNDQLLGFVR IRHDVIVTIITAAKRDLALVNDQLLGFVRE RDLALVNDQLLGFVRERTLDKRWRVRKEAM R D L V R E 1 1 1 2 0 1 0 1 0 0 4 0 0 1 0 0 0 0 0 2 0 0 14 0 1571.8671 G1UI16;Q29RF7 G1UI16 391 404 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 7.0939E-21 138.25 2 0.68184 0.70141 7.3832 2 Median 0.68184 0.70141 7.3832 2 0 Median NaN NaN NaN 0 0 Median 21049000 13131000 7917500 21049000 13131000 7917500 0 0 0 1916 1270 1971 5141;5142 8085;8086;8087;8088 8087 4 DLANIAEVEVSIPAK ANCEAARSRILSIQKDLANIAEVEVSIPAK DLANIAEVEVSIPAKLHNSLIGTKGRLIRS K D L A K L 3 0 1 1 0 0 2 0 0 2 1 1 0 0 1 1 0 0 0 2 0 0 15 0 1567.8457 A0A024R4E5;Q00341;B2R5V9;H0Y394;Q6ZS03;Q96CF6;Q6ZN49;H7BZC3;H7C2D1 A0A024R4E5 649 663 HDLBP Vigilin yes no 2 6.3843E-07 98.337 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1917 154 1972 5143;5144 8089;8090 8090 2 DLANLEVPHELPTK EAMERLKMLALLKRKDLANLEVPHELPTKQ KDLANLEVPHELPTKQDGSGVKGYEEKLNG K D L T K Q 1 0 1 1 0 0 2 0 1 0 3 1 0 0 2 0 1 0 0 1 0 0 14 0 1574.8304 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 53 66 GATAD2B Transcriptional repressor p66-beta yes no 2;3 1.5582E-07 118.76 4 2 0.73877 0.80903 82.854 6 Median 0.7179 0.77087 21.15 4 0 Median 4.1966 3.381 20.759 2 0 Median 184630000 104560000 80076000 174940000 102530000 72417000 9689200 2030000 7659300 1918 591 1973 5145;5146;5147;5148;5149;5150 8091;8092;8093;8094;8095;8096;8097;8098;8099 8094 9 DLAPIGIR ASKGGIVGMTLPIARDLAPIGIRVMTIAPG MTLPIARDLAPIGIRVMTIAPGLFGTPLLT R D L I R V 1 1 0 1 0 0 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 8 0 853.50215 A0A0S2Z410;Q99714 A0A0S2Z410 185 192 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 0.011674 69.383 1 1.9571 2.095 NaN 1 Median 1.9571 2.095 NaN 1 0 Median NaN NaN NaN 0 0 Median 45506000 15816000 29690000 45506000 15816000 29690000 0 0 0 1919 555 1974 5151 8100 8100 1 DLAPYLPSVTPGLK AAQIIGNMYSLTDQKDLAPYLPSVTPGLKA KDLAPYLPSVTPGLKASLLDPVPEVRTVSA K D L L K A 1 0 0 1 0 0 0 1 0 0 3 1 0 0 3 1 1 0 1 1 0 0 14 0 1469.813 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1650 1663 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.00019192 70.488 2 2 1.4081 1.2814 38.065 4 Median 1.7685 1.7779 0.67126 2 0 Median 1.1309 0.9197 1.2518 2 0 Median 42451000 14567000 27884000 37035000 11879000 25156000 5415300 2687300 2728000 1920 1205 1975 5152;5153;5154;5155 8101;8102;8103;8104;8105;8106;8107;8108 8104 8 DLAQALINR RPVTLRTNTLKTRRRDLAQALINRGVNLDP LKTRRRDLAQALINRGVNLDPLGKWSKTGL R D L N R G 2 1 1 1 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1012.5665 P46087;F5GYR3 P46087 323 331 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 4.0887E-05 112.17 3 2 1.1078 0.9289 13.684 3 Median 1.0164 1.1669 NaN 1 0 Median 1.1104 0.92106 1.1986 2 0 Median 172520000 92426000 80099000 138670000 76969000 61705000 33851000 15457000 18394000 1921 1570 1976 5156;5157;5158;5159;5160 8109;8110;8111;8112;8113;8114;8115;8116 8109 8 DLAQDEAVWLER KLCQALAINKSFDQRDLAQDEAVWLERGPL DQRDLAQDEAVWLERGPLEPSEPAVVAAAR R D L E R G 2 1 0 2 0 1 2 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 12 0 1443.6994 A2IDA3;Q1W6H1;P29372 A2IDA3 218 229 MPG DNA-3-methyladenine glycosylase yes no 2 0.0006885 77.64 2 0.56035 0.49228 19.851 2 Median NaN NaN NaN 0 0 Median 0.56035 0.49228 19.851 2 0 Median 4942800 3039700 1903100 0 0 0 4942800 3039700 1903100 1922 651 1977 5161;5162 8117;8118;8119 8118 3 DLAQINDLQAQLEEANK ELMKKHKAAVAQASRDLAQINDLQAQLEEA AQINDLQAQLEEANKEKQELQEKLQALQSQ R D L N K E 3 0 2 2 0 3 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 17 0 1911.9538 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4DZ32;B3KVF8;B4DFN7 A0A0D9SFK2 1771 1787 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.00022233 76.073 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1923 12 1978 5163 8120 8120 1 DLASVNNLLK LSEVEALLASEDYGKDLASVNNLLKKHQLL EDYGKDLASVNNLLKKHQLLEADISAHEDR K D L L K K 1 0 2 1 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1085.6081 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1674 1683 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.036959 40.002 1 2.8227 2.3127 NaN 1 Median NaN NaN NaN 0 0 Median 2.8227 2.3127 NaN 1 0 Median 2517400 542860 1974500 0 0 0 2517400 542860 1974500 1924 523 1979 5164 8121 8121 1 DLASVQALLR IKEKEQLMASDDFGRDLASVQALLRKHEGL DDFGRDLASVQALLRKHEGLERDLAALEDK R D L L R K 2 1 0 1 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1084.6241 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 286 295 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0018674 71.692 2 1.572 1.5969 NaN 1 Median 1.572 1.5969 NaN 1 0 Median NaN NaN NaN 0 0 Median 10335000 5793800 4541000 10335000 5793800 4541000 0 0 0 1925 523 1980 5165;5166 8122;8123 8122 2 DLASVSLK RQTMLFSATMTDEVKDLASVSLKNPVRIFV TMTDEVKDLASVSLKNPVRIFVNSNTDVAP K D L L K N 1 0 0 1 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 8 0 831.47018 B3GQE6;Q53G15;A0A087X059;B7Z6D5;Q96GQ7 B3GQE6 380 387 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.013465 65.252 1 1.1733 1.2603 NaN 1 Median 1.1733 1.2603 NaN 1 0 Median NaN NaN NaN 0 0 Median 39591000 18625000 20966000 39591000 18625000 20966000 0 0 0 1926 899;1099 1981 5167 8124;8125;8126 8124 3 DLAVPAALTPR TAVMIIAYHTVCTPRDLAVPAALTPRASPG CTPRDLAVPAALTPRASPGHSPHYFAASSP R D L P R A 3 1 0 1 0 0 0 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 11 0 1122.6397 Q8TEM1 Q8TEM1 1836 1846 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0070376 53.327 1 1.1014 1.1002 NaN 1 Median 1.1014 1.1002 NaN 1 0 Median NaN NaN NaN 0 0 Median 8824100 4414400 4409700 8824100 4414400 4409700 0 0 0 1927 1937 1982 5168 8127 8127 1 DLAYCVSQLPLTER LCQRFRTSRTERQQRDLAYCVSQLPLTERG RDLAYCVSQLPLTERGLRKMLDNFDCFGDK R D L E R G 1 1 0 1 1 1 1 0 0 0 3 0 0 0 1 1 1 0 1 1 0 0 14 0 1663.824 B3KMS0;Q15021;B3KY03 B3KMS0 1225 1238 NCAPD2 Condensin complex subunit 1 yes no 2 5.2238E-30 159.99 2 2 1.2212 1.1983 16.683 4 Median 0.91487 1.0305 2.5342 2 0 Median 1.5841 1.3742 0.57071 2 0 Median 313310000 150530000 162780000 171910000 95600000 76315000 141400000 54932000 86467000 1928 908 1983 5169;5170;5171;5172 8128;8129;8130;8131;8132;8133;8134;8135 8130 8 DLDDFQSWLSR EASLGEASKLQQFLRDLDDFQSWLSRTQTA QFLRDLDDFQSWLSRTQTAIASEDMPNTLT R D L S R T 0 1 0 3 0 1 0 0 0 0 2 0 0 1 0 2 0 1 0 0 0 0 11 0 1380.631 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 984 994 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00085012 72.006 2 1.3033 1.3143 NaN 1 Median 1.3033 1.3143 NaN 1 0 Median NaN NaN NaN 0 0 Median 6211400 2878300 3333000 6211400 2878300 3333000 0 0 0 1929 415 1984 5173;5174 8136;8137 8137 2 DLDEDANGITDEGK QANVESLKETKQNCKDLDEDANGITDEGKE KDLDEDANGITDEGKEINEKSSQLKNLSEL K D L G K E 1 0 1 4 0 0 2 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 14 0 1490.6373 Q5QJE6;J3KP30 Q5QJE6 298 311 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 3.507E-57 191.53 2 2 1.2106 1.1224 12.044 4 Median 0.91277 1.0199 3.7861 2 0 Median 1.5539 1.2448 4.885 2 0 Median 145130000 69524000 75608000 120510000 59834000 60679000 24619000 9690500 14929000 1930 1813 1985 5175;5176;5177;5178 8138;8139;8140;8141;8142;8143;8144;8145;8146;8147 8138 10 DLDEEIFDDDDFYHQLLR EPEILPQAPANAHLKDLDEEIFDDDDFYHQ EEIFDDDDFYHQLLRELIERKTSSLDPNDQ K D L L R E 0 1 0 6 0 1 2 0 1 1 3 0 0 2 0 0 0 0 1 0 0 0 18 0 2297.0124 Q9NY61;A0A087WWS8;A0A087WTH8 Q9NY61 452 469 AATF Protein AATF yes no 2;3 1.1876E-51 142.01 4 3 0.9721 1.0846 25.186 7 Median 0.9082 1.0703 13.184 4 0 Linear 1.7301 1.5092 14.193 3 0 Median 241440000 111330000 130110000 115280000 62828000 52451000 126160000 48502000 77660000 1931 2080 1986 5179;5180;5181;5182;5183;5184;5185 8148;8149;8150;8151;8152;8153;8154;8155;8156;8157;8158;8159 8152 12 DLDELSRYPEDK DQASNILASFGLSARDLDELSRYPEDKITP SARDLDELSRYPEDKITPENLPQILLQLKR R D L D K I 0 1 0 3 0 0 2 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 12 1 1478.6889 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991 D6REM6 121 132 MATR3;DKFZp686K23100 Matrin-3 yes no 2 3.4386E-17 143.79 2 2 1.3786 1.6001 27.353 3 Plateau 1.3811 1.5786 1.9121 2 0 Median 1.1738 0.9835 NaN 1 0 Median 66129000 26629000 39500000 59385000 23593000 35792000 6743500 3035200 3708200 1932 542 1987 5186;5187;5188;5189 8160;8161;8162;8163;8164;8165 8163 6 DLDLDAFAEELER AGALEEILENPERLKDLDLDAFAEELERQG LKDLDLDAFAEELERQGYGDKHITLYDIRA K D L E R Q 2 1 0 3 0 0 3 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 13 0 1534.7151 Q7KZ85 Q7KZ85 1101 1113 SUPT6H Transcription elongation factor SPT6 yes yes 2 5.8191E-09 110.66 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3936900 3936900 0 3936900 3936900 0 0 0 0 1933 1870 1988 5190 8166 8166 1 DLDRPESQSPK GRKSKAELLLLKLSKDLDRPESQSPKRPPE KLSKDLDRPESQSPKRPPEDFETPSGERPR K D L P K R 0 1 0 2 0 1 1 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 11 1 1270.6153 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 159 169 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.029574 61.213 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1934 1938 1989 5191 8167 8167 1 DLDVITIPSK CVRKRPLNKKETQMKDLDVITIPSKDVVMV ETQMKDLDVITIPSKDVVMVHEPKQKVDLT K D L S K D 0 0 0 2 0 0 0 0 0 2 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1099.6125 B0AZS5;O00139;B4DM85;D6R9M0 B0AZS5 196 205 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 0.0040971 73.985 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25669000 25669000 0 24643000 24643000 0 1025900 1025900 0 1935 804 1990 5192;5193;5194 8168;8169;8170 8169 3 DLEAEHVEVEDTTLNR AMELSAEYLREKLQRDLEAEHVEVEDTTLN LEAEHVEVEDTTLNRCSCSFRVLVVSAKFE R D L N R C 1 1 1 2 0 0 4 0 1 0 2 0 0 0 0 0 2 0 0 2 0 0 16 0 1868.8752 A0A087WZT3;Q9H3K6;H3BV85;H3BTW0;A0A0B4J295;H3BVE0 A0A087WZT3 81 96 BOLA2;BOLA2B BolA-like protein 2 yes no 2;3 7.1595E-09 101.39 2 3.8266 3.8338 NaN 1 Median 3.8266 3.8338 NaN 1 0 Median NaN NaN NaN 0 0 Median 24719000 3868800 20851000 24719000 3868800 20851000 0 0 0 1936 441 1991 5195;5196 8171;8172 8172 2 DLEAHIDSANK SMAVAARKKLEMDLKDLEAHIDSANKNRDE MDLKDLEAHIDSANKNRDEAIKQLRKLQAQ K D L N K N 2 0 1 2 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1211.5782 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1621 1631 MYH9;FLJ00279 Myosin-9 yes no 2 5.1535E-41 196.07 1 2 2.5901 2.2539 4.0059 3 Median 2.0101 2.3655 NaN 1 0 Median 2.6434 2.2191 2.2041 2 0 Median 501220000 139940000 361270000 396440000 111970000 284460000 104780000 27968000 76811000 1937 81 1992 5197;5198;5199 8173;8174;8175 8173 3 DLEALLNSK TKKEGDLIAAQARLKDLEALLNSKEAALST AQARLKDLEALLNSKEAALSTALSEKRTLE K D L S K E 1 0 1 1 0 0 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 1001.5393 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 136 144 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.021717 56.258 1 2 1.4637 1.175 3.0331 2 Median NaN NaN NaN 0 0 Median 1.4637 1.175 3.0331 2 0 Median 39062000 5647400 33414000 25453000 0 25453000 13609000 5647400 7961700 1938 1440 1993 5200;5201;5202 8176;8177;8178 8178 3 DLEDGEVPQHAGK ARRESGGRPIKPPKKDLEDGEVPQHAGKKG KKDLEDGEVPQHAGKKGKLSEHLRYCDSIL K D L G K K 1 0 0 2 0 1 2 2 1 0 1 1 0 0 1 0 0 0 0 1 0 0 13 0 1393.6474 A0A024R8H6;Q15059;A0A140F1N4 A0A024R8H6 292 304 BRD3 Bromodomain-containing protein 3 yes no 2 1.0245E-29 157.24 2 1 0.83392 0.7729 38.98 2 Median 0.56612 0.5867 NaN 1 0 Median 1.2284 1.0182 NaN 1 0 Median 23979000 19298000 4681700 21681000 18304000 3377500 2298000 993830 1304200 1939 249 1994 5203;5204;5205 8179;8180;8181;8182;8183;8184 8181 6 DLEDLFYK GRIYVGNLPTDVREKDLEDLFYKYGRIREI PTDVREKDLEDLFYKYGRIREIELKNRHGL K D L Y K Y 0 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 8 0 1041.5019 Q13242;A8K3M9;H0YIB4;S4R3G0;B4DFT9 Q13242 29 36 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.0052559 91.041 2 1.8475 1.8618 2.254 2 Median 1.8475 1.8618 2.254 2 0 Median NaN NaN NaN 0 0 Median 28956000 10541000 18415000 28956000 10541000 18415000 0 0 0 1940 1709 1995 5206;5207 8185;8186;8187;8188 8188 4 DLEDSLAR SQLQKQLAAKEAKLRDLEDSLARERDTSRR AKEAKLRDLEDSLARERDTSRRLLAEKERE R D L A R E 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 917.44543 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8 P02545 322 329 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.0092533 75.109 2 1.1785 1.335 1.915 2 Median 1.1785 1.335 1.915 2 0 Median NaN NaN NaN 0 0 Median 142640000 59133000 83511000 142640000 59133000 83511000 0 0 0 1941 1440 1996 5208;5209 8189;8190 8189 2 DLEEALEMGVDWSLR PVGVGSKGVIPMNAKDLEEALEMGVDWSLR DLEEALEMGVDWSLREGYAWAEDKEHCEEY K D L L R E 1 1 0 2 0 0 3 1 0 0 3 0 1 0 0 1 0 1 0 1 0 0 15 0 1761.8244 Q9Y3I0;B4DNA0 Q9Y3I0 167 181 RTCB tRNA-splicing ligase RtcB homolog yes no 2 2.1999E-15 127.37 3 1.2467 1.3025 NaN 1 Median 1.2467 1.3025 NaN 1 0 Median NaN NaN NaN 0 0 Median 4806500 2082000 2724500 4806500 2082000 2724500 0 0 0 1942 2137 1997 5210;5211;5212 8191;8192;8193 8191 1971 3 DLEEDHACIPIK IIAGAGELHLEICLKDLEEDHACIPIKKSD CLKDLEEDHACIPIKKSDPVVSYRETVSEE K D L I K K 1 0 0 2 1 0 2 0 1 2 1 1 0 0 1 0 0 0 0 0 0 0 12 0 1438.6762 P13639;Q8TA90;B4DPU3;Q6PK56 P13639 560 571 EEF2 Elongation factor 2 yes no 2 0.00024011 86.898 2 1 4.944 5.3255 NaN 1 Median 4.944 5.3255 NaN 1 0 Median NaN NaN NaN 0 0 Median 44045000 6559600 37485000 41173000 6559600 34614000 2871400 0 2871400 1943 1478 1998 5213;5214;5215 8194;8195;8196;8197 8195 4 DLEEFFSTVGK ______________________________ IRPRDLEEFFSTVGKVRDVRMISDRNSRRS R D L G K V 0 0 0 1 0 0 2 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1270.6081 A0A0U1RQH7;B7Z4L7;Q6N037;E1P5S2;G3XAC6;B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;Q7Z3L0;Q6MZY7;H0Y4X3;Q5QP23;Q5QP22 A0A0U1RQH7 15 25 DKFZp686A11192;RNPC2;RBM39;DKFZp781C0423;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 2 2.7321E-06 111.65 2 2 0.78693 0.69357 41.801 4 Median 0.99936 0.99488 2.0676 2 0 Median 0.59909 0.48264 2.3206 2 0 Median 61809000 31138000 30671000 51460000 24982000 26478000 10349000 6155900 4192600 1944 588 1999 5216;5217;5218;5219 8198;8199;8200;8201;8202;8203;8204 8199 7 DLEGAVSR RGFSDSGGGPPAKQRDLEGAVSRLGGERRT GPPAKQRDLEGAVSRLGGERRTRRESRQES R D L S R L 1 1 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 845.4243 Q9H307;A8K964;G3V5F0;G3V579 Q9H307 78 85 PNN Pinin yes no 2 0.011377 75.109 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1945 2028 2000 5220 8205 8205 1 DLEGENIEIVFAKPPDQK ERDGAVKAMEEMNGKDLEGENIEIVFAKPP GENIEIVFAKPPDQKKKKKK__________ K D L Q K K 1 0 1 2 0 1 3 1 0 2 1 2 0 1 2 0 0 0 0 1 0 0 18 1 2041.0368 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645;B7Z213 Q05CK9 431 448 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 3 0.0001443 46.663 2 1.3037 1.5144 5.1198 2 Median 1.3037 1.5144 5.1198 2 0 Median NaN NaN NaN 0 0 Median 29809000 16351000 13458000 29809000 16351000 13458000 0 0 0 1946 864 2001 5221;5222 8206;8207;8208 8207 3 DLEGLSQR GCLETAEEVKRKLQKDLEGLSQRHEEKVAA VKRKLQKDLEGLSQRHEEKVAAYDKLEKTK K D L Q R H 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 916.46141 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1393 1400 MYH9 Myosin-9 yes no 2 0.021837 64.265 1 2 2.5788 2.1812 0.49895 2 Median NaN NaN NaN 0 0 Median 2.5788 2.1812 0.49895 2 0 Median 72093000 3524800 68569000 58942000 0 58942000 13152000 3524800 9627000 1947 81 2002 5223;5224;5225 8209;8210;8211 8209 3 DLEGSDIDTR DEEAFEDNSEEYIRRDLEGSDIDTRRRAAC EYIRRDLEGSDIDTRRRAACDLVRGLCKFF R D L T R R 0 1 0 3 0 0 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1119.5044 B4DUC5;P55060;B4DPS6;B4DM31;B4DM67 B4DUC5 156 165 CSE1L Exportin-2 yes no 2 0.010843 62.463 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2709800 2709800 0 2709800 2709800 0 0 0 0 1948 1037 2003 5226 8212 8212 1 DLEHPLLPDGILEIPK MNKQVFEQWLLTDLRDLEHPLLPDGILEIP LEHPLLPDGILEIPKGELNGFYALQINSLV R D L P K G 0 0 0 2 0 0 2 1 1 2 4 1 0 0 3 0 0 0 0 0 0 0 16 0 1797.9877 A0A0A0MSU3;Q9H9A7 A0A0A0MSU3 63 78 RMI1 RecQ-mediated genome instability protein 1 yes no 3 0.00011198 52.254 2 1 0.40255 0.40835 NaN 1 Median 0.40255 0.40835 NaN 1 0 Median NaN NaN NaN 0 0 Median 8093400 6447900 1645500 7740700 6095200 1645500 352700 352700 0 1949 481 2004 5227;5228;5229 8213;8214;8215;8216;8217 8215 5 DLELEMGDDYILDLQK RKRMETEESRKKRERDLELEMGDDYILDLQ LELEMGDDYILDLQKYWDLMNLSEKHDKIP R D L Q K Y 0 0 0 4 0 1 2 1 0 1 4 1 1 0 0 0 0 0 1 0 0 0 16 0 1908.9027 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 398 413 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 3.1572E-25 146.07 2 1 1.471 1.6584 2.2513 2 Median 1.471 1.6584 2.2513 2 0 Median NaN NaN NaN 0 0 Median 233060000 87743000 145320000 222670000 87743000 134920000 10397000 0 10397000 1950 1183 2005 5230;5231;5232 8218;8219;8220;8221;8222 8218 894 5 DLENGSHIR VKKAILCLLLGGVERDLENGSHIRGDINIL LGGVERDLENGSHIRGDINILLIGDPSVAK R D L I R G 0 1 1 1 0 0 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1039.5047 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 328 336 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.024033 47.082 1 1 0.83351 0.78893 47.321 2 Median 1.0681 1.1024 NaN 1 0 Median 0.65043 0.56457 NaN 1 0 Median 26203000 12985000 13218000 24034000 11705000 12329000 2169200 1280300 888910 1951 568 2006 5233;5234 8223;8224 8223 2 DLENLGLTHLIGSPFLR PESTVYDDYKFVTKKDLENLGLTHLIGSPF ENLGLTHLIGSPFLRAYMHGFFMDIRLYHK K D L L R A 0 1 1 1 0 0 1 2 1 1 5 0 0 1 1 1 1 0 0 0 0 0 17 0 1894.0312 Q9BSC4;B4DS83 Q9BSC4 380 396 NOL10 Nucleolar protein 10 yes no 2;3 2.2684E-10 104.44 5 1 0.99995 1.0719 9.7601 5 Median 0.97226 1.0843 11.037 4 0 Median 1.1921 1.0288 NaN 1 0 Median 234280000 112590000 121690000 149950000 78951000 70996000 84329000 33638000 50691000 1952 2000 2007 5235;5236;5237;5238;5239;5240 8225;8226;8227;8228;8229;8230;8231;8232;8233;8234;8235;8236 8226 11 DLEQGDVSETIR LFSRIFNCNPDDMARDLEQGDVSETIRVFF MARDLEQGDVSETIRVFFEQSKSFPPAAKS R D L I R V 0 1 0 2 0 1 2 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1360.647 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 344 355 LIG3 DNA ligase 3;DNA ligase yes no 2 6.809E-09 123.79 1 0.52441 0.5737 NaN 1 Median 0.52441 0.5737 NaN 1 0 Median NaN NaN NaN 0 0 Median 34121000 21530000 12591000 34121000 21530000 12591000 0 0 0 1953 1589 2008 5241 8237;8238 8238 2 DLESLFHR KKREGELTVAQGRVKDLESLFHRSEVELAA VAQGRVKDLESLFHRSEVELAAALSDKRGL K D L H R S 0 1 0 1 0 0 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 1015.5087 Q03252 Q03252 151 158 LMNB2 Lamin-B2 yes yes 2 0.054216 105.12 1 1.319 1.3201 NaN 1 Median 1.319 1.3201 NaN 1 0 Median NaN NaN NaN 0 0 Median 17074000 7298900 9774900 17074000 7298900 9774900 0 0 0 1954 1682 2009 5242 8239 8239 0 DLETDEVEEFLENK HCQKTDLKLSLLDQRDLETDEVEEFLENKN RDLETDEVEEFLENKNVQTPQCKLRRYQGN R D L N K N 0 0 1 2 0 0 5 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 14 0 1708.7679 A8K4Q6;O14867;C9JMP6;C9IYR0 A8K4Q6 164 177 BACH1 Transcription regulator protein BACH1 yes no 2 7.4152E-05 89.403 2 1 1.7105 1.7322 2.4717 2 Median 1.7105 1.7322 2.4717 2 0 Median NaN NaN NaN 0 0 Median 16278000 5433300 10844000 14555000 5433300 9121900 1722300 0 1722300 1955 739 2010 5243;5244;5245 8240;8241;8242;8243;8244 8240 5 DLEWVER NDVNGLKQCLAEFKRDLEWVERLDVTLGPV QCLAEFKRDLEWVERLDVTLGPVPEIGGSE R D L E R L 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 7 0 945.4556 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 63 69 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.051136 54.549 1 1.0361 0.86886 NaN 1 Median NaN NaN NaN 0 0 Median 1.0361 0.86886 NaN 1 0 Median 4868500 2429300 2439200 0 0 0 4868500 2429300 2439200 1956 1316 2011 5246 8245 8245 1 DLFDLILTCEER NKRIKPRPERFQNCKDLFDLILTCEERVYD NCKDLFDLILTCEERVYDQVVEDLNSREQE K D L E R V 0 1 0 2 1 0 2 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 12 0 1522.7337 B4DMK6;Q9NP77 B4DMK6 103 114 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 yes no 2 0.00088271 84.17 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1921900 0 1921900 1921900 0 1921900 0 0 0 1957 1006 2012 5247;5248 8246;8247 8247 2 DLFDLNSSEEDDTEGFSER RKMADRKDEDRKQFKDLFDLNSSEEDDTEG LNSSEEDDTEGFSERGILRPLSTRHGVEDD K D L E R G 0 1 1 4 0 0 4 1 0 0 2 0 0 2 0 3 1 0 0 0 0 0 19 0 2203.9029 Q9Y3T9;Q9H9J5;Q8NAK7 Q9Y3T9 666 684 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.0018543 50.155 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6394500 0 6394500 6394500 0 6394500 0 0 0 1958 2139 2013 5249 8248 8248 1 DLFDPIIEDR VGCVAGDEESYEVFKDLFDPIIEDRHGGYK YEVFKDLFDPIIEDRHGGYKPSDEHKTDLN K D L D R H 0 1 0 3 0 0 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 10 0 1231.6085 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;G3V4N7;G3V461 V9HWH2 87 96 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 0.002232 80.755 4 4.715 4.9517 NaN 1 Median 4.715 4.9517 NaN 1 0 Median NaN NaN NaN 0 0 Median 22695000 2429700 20265000 22695000 2429700 20265000 0 0 0 1959 557 2014 5250;5251;5252;5253 8249;8250;8251;8252;8253 8249 5 DLFEQALDGCPPK KFIARYGGRKLERARDLFEQALDGCPPKYA ARDLFEQALDGCPPKYAKTLYLLYAQLEEE R D L P K Y 1 0 0 2 1 1 1 1 0 0 2 1 0 1 2 0 0 0 0 0 0 0 13 0 1488.6919 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 429 441 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 0.0091824 54.784 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1960 1838 2015 5254 8254 8254 1 DLFNVDAFK DSFDEMNAELQSKLKDLFNVDAFKLESLEA LQSKLKDLFNVDAFKLESLEAKNRALNEQI K D L F K L 1 0 1 2 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 9 0 1067.5288 A8K031;O14777;Q05DQ6 A8K031 256 264 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.0035543 71.501 2 1 0.86739 0.83589 3.636 3 Median 0.83081 0.85137 2.595 2 0 Median 1.0251 0.80632 NaN 1 0 Median 32656000 16714000 15942000 29381000 14851000 14529000 3275200 1862600 1412600 1961 696 2016 5255;5256;5257 8255;8256;8257;8258;8259 8256 5 DLFQVAFNR KGVTDHTQRLSIITKDLFQVAFNRVARGML LSIITKDLFQVAFNRVARGMLHQDHITFAM K D L N R V 1 1 1 1 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 9 0 1108.5665 Q14204 Q14204 3862 3870 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.029116 56.547 1 1.6044 1.6771 NaN 1 Median 1.6044 1.6771 NaN 1 0 Median NaN NaN NaN 0 0 Median 4741900 1847000 2894800 4741900 1847000 2894800 0 0 0 1962 1729 2017 5258 8260 8260 1 DLFTASNDPLLWR LLDVRSVLSLSAVCRDLFTASNDPLLWRFL CRDLFTASNDPLLWRFLYLRDFRDNTVRVQ R D L W R F 1 1 1 2 0 0 0 0 0 0 3 0 0 1 1 1 1 1 0 0 0 0 13 0 1546.778 Q5HYB3;A8K7F7;Q9Y3I1 Q5HYB3 72 84 DKFZp686B08113;FBXO7 F-box only protein 7 yes no 2 0.020015 47.559 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2461300 2461300 0 2461300 2461300 0 0 0 0 1963 771 2018 5259;5260 8261;8262 8262 2 DLGALTPDER PPHTDSLRASKIRLRDLGALTPDERLTPLG KIRLRDLGALTPDERLTPLGYHLASLPVDV R D L E R L 1 1 0 2 0 0 1 1 0 0 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1085.5353 Q6P158;Q59G60;H7C109 Q6P158 1042 1051 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2 0.00043658 73.233 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1964 1850 2019 5261 8263 8263 1 DLGDLCGPYYPEHCLPK SCLVCCLCQNPANFKDLGDLCGPYYPEHCL GDLCGPYYPEHCLPKKKPKLKEKVRPEGTC K D L P K K 0 0 0 2 2 0 1 2 1 0 3 1 0 0 3 0 0 0 2 0 0 0 17 0 2032.9023 Q7Z5J4 Q7Z5J4 1698 1714 RAI1 Retinoic acid-induced protein 1 yes yes 3 0.0051126 27.514 1 0.94646 0.75458 NaN 1 Median NaN NaN NaN 0 0 Median 0.94646 0.75458 NaN 1 0 Median 3091900 1898000 1194000 0 0 0 3091900 1898000 1194000 1965 1879 2020 5262 8264 8264 1 DLGEEHFK FRRDTHKSEIAHRFKDLGEEHFKGLVLIAF EIAHRFKDLGEEHFKGLVLIAFSQYLQQCP K D L F K G 0 0 0 1 0 0 2 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 973.45051 CON__P02769 CON__P02769 37 44 yes yes 2 0.012137 74.127 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37194000 37194000 0 37194000 37194000 0 0 0 0 + 1966 1153 2021 5263;5264 8265;8266 8265 2 DLGEELEALK ESERASRNKAEKQKRDLGEELEALKTELED EKQKRDLGEELEALKTELEDTLDSTAAQQE R D L L K T 1 0 0 1 0 0 3 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1115.571 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;Q7Z7R0 A0A024R1N1 1136 1145 MYH9;MYH11 Myosin-9;Myosin-11 yes no 2 0.00032481 86.67 2 3 1.7087 1.924 10.998 3 Median 1.6588 1.8454 5.8989 2 0 Median 2.826 2.2011 NaN 1 0 Median 145030000 53171000 91856000 123990000 43967000 80021000 21040000 9204200 11835000 1967 81 2022 5265;5266;5267;5268;5269 8267;8268;8269;8270;8271;8272 8272 6 DLGFNGAPYR EALTKEELEFEVPFRDLGFNGAPYRSTCLL EVPFRDLGFNGAPYRSTCLLQPTSSALVNA R D L Y R S 1 1 1 1 0 0 0 2 0 0 1 0 0 1 1 0 0 0 1 0 0 0 10 0 1108.5302 Q9Y5B9 Q9Y5B9 803 812 SUPT16H FACT complex subunit SPT16 yes yes 2 2.9156E-11 122.74 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 184170000 75494000 108680000 175740000 73154000 102580000 8432600 2340500 6092100 1968 2148 2023 5270;5271;5272;5273;5274;5275 8273;8274;8275;8276;8277;8278 8273 6 DLGLAFEIPPHMK LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ GKDLGLAFEIPPHMKNQALFPACVLKNAEL K D L M K N 1 0 0 1 0 0 1 1 1 1 2 1 1 1 2 0 0 0 0 0 0 0 13 0 1466.7592 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 130 142 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 4.3051E-06 95.573 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12759000 0 12759000 12759000 0 12759000 0 0 0 1969 452 2024 5276;5277;5278 8279;8280;8281 8280 316 3 DLGVLDVIFHPTQPWVFSSGADGTVR LLVPVKVLKGHVLTRDLGVLDVIFHPTQPW TQPWVFSSGADGTVRLFT____________ R D L V R L 1 1 0 3 0 1 0 3 1 1 2 0 0 2 2 2 2 1 0 4 0 0 26 0 2812.4184 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 718 743 BOP1 Ribosome biogenesis protein BOP1 yes no 3 1.3201E-37 137.24 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28226000 16373000 11853000 28226000 16373000 11853000 0 0 0 1970 1726 2025 5279 8282 8282 1 DLGVTDVLCEACDQLGWTK ASQPIVEEEETKTFKDLGVTDVLCEACDQL TDVLCEACDQLGWTKPTKIQIEAIPLALQG K D L T K P 1 0 0 3 2 1 1 2 0 0 3 1 0 0 0 0 2 1 0 2 0 0 19 0 2178.9926 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9;B4DYP6 Q53GJ1 21 39 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 1.2371E-16 115.8 2 0.92284 0.94655 4.6673 2 Median 0.92284 0.94655 4.6673 2 0 Median NaN NaN NaN 0 0 Median 32600000 21157000 11443000 32600000 21157000 11443000 0 0 0 1971 313 2026 5280;5281 8283;8284;8285 8283 3 DLGVTDVLCEACDQLGWTKPTK ASQPIVEEEETKTFKDLGVTDVLCEACDQL LCEACDQLGWTKPTKIQIEAIPLALQGRDI K D L T K I 1 0 0 3 2 1 1 2 0 0 3 2 0 0 1 0 3 1 0 2 0 0 22 1 2505.188 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9;B4DYP6 Q53GJ1 21 42 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 3 1.7071E-29 132.48 2 1.3469 1.1462 3.6176 2 Median NaN NaN NaN 0 0 Median 1.3469 1.1462 3.6176 2 0 Median 33912000 14347000 19565000 0 0 0 33912000 14347000 19565000 1972 313 2027 5282;5283 8286;8287;8288;8289 8288 4 DLHTTAFK LERLGRSRWQGELQRDLHTTAFKVDAGKLH WQGELQRDLHTTAFKVDAGKLHYHRKILNK R D L F K V 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 2 0 0 0 0 0 8 0 931.47633 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 196 203 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0015831 107.66 2 1 0.74993 0.80998 12.891 2 Median 0.74993 0.80998 12.891 2 0 Median NaN NaN NaN 0 0 Median 78660000 43259000 35401000 76899000 43259000 33640000 1761400 0 1761400 1973 1699 2028 5284;5285;5286 8290;8291;8292 8290 3 DLIDEGHAATQLVNQLHDVVVENNLSDK ACQSGSFDKLEAVVKDLIDEGHAATQLVNQ NQLHDVVVENNLSDKQKSIITEKLAEVDKC K D L D K Q 2 0 3 4 0 2 2 1 2 1 4 1 0 0 0 1 1 0 0 4 0 0 28 0 3085.5316 P35249;H7C1P0 P35249 295 322 RFC4 Replication factor C subunit 4 yes no 3 0.031709 14.053 1 0.71136 0.56574 NaN 1 Median NaN NaN NaN 0 0 Median 0.71136 0.56574 NaN 1 0 Median 6628800 3754600 2874200 0 0 0 6628800 3754600 2874200 1974 1541 2029 5287 8293 8293 1 DLIDNSFNR LALGAVIASSKKAKRDLIDNSFNRYTFNED SKKAKRDLIDNSFNRYTFNEDEGELPEWFV R D L N R Y 0 1 2 2 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1092.52 Q8IY81;B4DKU3 Q8IY81 683 691 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 1.2444E-05 107.9 1 2 1.34 1.1356 4.0305 2 Median NaN NaN NaN 0 0 Median 1.34 1.1356 4.0305 2 0 Median 13910000 6136600 7773500 0 0 0 13910000 6136600 7773500 1975 1898 2030 5288;5289;5290 8294;8295;8296;8297 8294 4 DLIDYVR AEASLPEKKGNTLSRDLIDYVRYMVENHGE KKGNTLSRDLIDYVRYMVENHGEDYKAMAR R D L V R Y 0 1 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 892.46543 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9P0T8 Q9Y3C1 114 120 NOP16 Nucleolar protein 16 yes no 2 0.03394 63.148 1 0.86555 0.98024 NaN 1 Median 0.86555 0.98024 NaN 1 0 Median NaN NaN NaN 0 0 Median 47947000 21390000 26557000 47947000 21390000 26557000 0 0 0 1976 2135 2031 5291 8298 8298 1 DLIEFGMIPEFVGR DIEEKDRLLRHVEARDLIEFGMIPEFVGRL RDLIEFGMIPEFVGRLPVVVPLHSLDEKTL R D L G R L 0 1 0 1 0 0 2 2 0 2 1 0 1 2 1 0 0 0 0 1 0 0 14 0 1621.8174 Q9H072;A0A024R5X7;O76031 Q9H072 486 499 DKFZp586J151;CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2 3.7439E-05 88.441 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3892000 0 3892000 3892000 0 3892000 0 0 0 1977 191 2032 5292;5293;5294 8299;8300;8301 8300 156 3 DLIGIDNLVVPGR MIKMENFQKLHELKKDLIGIDNLVVPGRPG KKDLIGIDNLVVPGRPGSFSLIRTPHLGQA K D L G R P 0 1 1 2 0 0 0 2 0 2 2 0 0 0 1 0 0 0 0 2 0 0 13 0 1379.7773 C9JME2;Q9Y4F1;M0QXT1;H0Y783 C9JME2 746 758 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 yes no 2 0.00036193 62.633 1 1.425 1.4367 NaN 1 Median 1.425 1.4367 NaN 1 0 Median NaN NaN NaN 0 0 Median 6334900 2838700 3496200 6334900 2838700 3496200 0 0 0 1978 1139 2033 5295 8302 8302 1 DLIGVQNLLK IREKEPIAASTNRGKDLIGVQNLLKKHQAL TNRGKDLIGVQNLLKKHQALQAEIAGHEPR K D L L K K 0 0 1 1 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 1 0 0 10 0 1111.6601 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 815 824 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.00019285 94.302 2 2 1.8048 1.8015 5.7101 2 Median 1.8048 1.8015 5.7101 2 0 Median NaN NaN NaN 0 0 Median 20882000 7282500 13599000 17683000 7282500 10401000 3198400 0 3198400 1979 523 2034 5296;5297;5298;5299 8303;8304;8305;8306;8307 8303 5 DLIHGAPVGK VLGEKTSNLRVKTLRDLIHGAPVGKPAANR VKTLRDLIHGAPVGKPAANRAFVSMVYSEE R D L G K P 1 0 0 1 0 0 0 2 1 1 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1005.5607 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709;Q68EN4;H0Y7K8;Q5H934;Q7Z4C6 Q14683 63 72 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0003605 88.819 2 0.86062 0.94226 4.1227 2 Median 0.86062 0.94226 4.1227 2 0 Median NaN NaN NaN 0 0 Median 86321000 44399000 41922000 86321000 44399000 41922000 0 0 0 1980 1739 2035 5300;5301 8308;8309;8310;8311 8309 4 DLIIEQR ELLELASRMENERTKDLIIEQRFHRTIIGQ RMENERTKDLIIEQRFHRTIIGQKGERIRE K D L Q R F 0 1 0 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 885.49198 A0A024R4E5;Q00341;B2R5V9;H0Y394;Q6ZS03;Q96CF6;Q6ZN49;H7BZC3 A0A024R4E5 511 517 HDLBP Vigilin yes no 2 0.048672 58.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13404000 0 13404000 13404000 0 13404000 0 0 0 1981 154 2036 5302 8312 8312 1 DLILADYGK TLTDEEWIKVEVQLKDLILADYGKKNNVNV VEVQLKDLILADYGKKNNVNVASLTQSEIR K D L G K K 1 0 0 2 0 0 0 1 0 1 2 1 0 0 0 0 0 0 1 0 0 0 9 0 1006.5335 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 1985 1993 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.010772 58.981 1 1 0.66669 0.63445 37.554 2 Median 0.4219 0.48648 NaN 1 0 Median 1.0535 0.82741 NaN 1 0 Median 187410000 134860000 52548000 185140000 133790000 51352000 2263400 1067400 1196000 1982 1854 2037 5303;5304 8313;8314 8313 2 DLILPTIQK SCAPLLRYLSHSEFKDLILPTIQKSLLRSP SHSEFKDLILPTIQKSLLRSPENVIETISS K D L Q K S 0 0 0 1 0 1 0 0 0 2 2 1 0 0 1 0 1 0 0 0 0 0 9 0 1039.6277 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 260 268 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0091127 60.478 2 1.8134 1.8331 1.6471 2 Median 1.8134 1.8331 1.6471 2 0 Median NaN NaN NaN 0 0 Median 42482000 15897000 26585000 42482000 15897000 26585000 0 0 0 1983 1205 2038 5305;5306 8315;8316;8317;8318;8319 8315 5 DLINLAK DGLVYAVEFSHRSGRDLINLAKKRTNIIPV EFSHRSGRDLINLAKKRTNIIPVIEDARHP R D L A K K 1 0 1 1 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 785.4647 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1 Q96BS4 138 144 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 0.026804 79.454 1 1 0.84445 0.84234 8.2706 2 Median 0.75891 0.89307 NaN 1 0 Median 0.93963 0.79449 NaN 1 0 Median 450540000 239170000 211370000 392550000 209640000 182900000 57996000 29529000 28467000 1984 1506 2039 5307;5308 8320;8321 8320 2 DLIQDQNMDEK LQSSVVATSKERTRRDLIQDQNMDEKGKQR RTRRDLIQDQNMDEKGKQRNRRIFGLLMGT R D L E K G 0 0 1 3 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 11 0 1347.5976 Q9H307;A8K964 Q9H307 127 137 PNN Pinin yes no 2 0.00012705 90.108 2 1.6056 1.6605 19.383 2 Median 1.6056 1.6605 19.383 2 0 Median NaN NaN NaN 0 0 Median 33540000 12411000 21129000 33540000 12411000 21129000 0 0 0 1985 2028 2040 5309;5310 8322;8323 8322 1866 2 DLIQMLVQR EKIQGKITIENRSKKDLIQMLVQRGYESDP ENRSKKDLIQMLVQRGYESDPVKAWKEAQE K D L Q R G 0 1 0 1 0 2 0 0 0 1 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1114.6169 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 1065 1073 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.0021719 75.854 2 3 0.9712 0.85516 14.478 4 Median 0.6841 0.70803 NaN 1 0 Median 1.0495 0.92122 10.586 3 0 Median 24982000 13894000 11089000 20360000 11431000 8929500 4622300 2463200 2159100 1986 1679 2041;2042 5311;5312;5313;5314;5315 8324;8325;8326;8327;8328;8329;8330;8331 8331 1481 8 DLITQATLLYTMADK YVQQARKEKNKDNKKDLITQATLLYTMADK DLITQATLLYTMADKIIMYDQNHLLGRACF K D L D K I 2 0 0 2 0 1 0 0 0 1 3 1 1 0 0 0 3 0 1 0 0 0 15 0 1695.8753 A8K6X9;Q6PD62;H0YCE8 A8K6X9 108 122 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 6.9653E-05 79.82 1 2.6764 2.6957 NaN 1 Median 2.6764 2.6957 NaN 1 0 Median NaN NaN NaN 0 0 Median 13440000 3537700 9902400 13440000 3537700 9902400 0 0 0 1987 765 2043 5316 8332;8333 8333 591 2 DLIVAEA KIQLSSLIAAFQVTRDLIVAEA________ IAAFQVTRDLIVAEA_______________ R D L E A - 2 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 729.39087 Q6LES9;A8K3S0;Q59GW7;P40937;A8K4Z2 Q6LES9 334 340 RFC5 Replication factor C subunit 5 yes no 1 0.054077 67.035 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6957600 0 0 6957600 0 0 0 0 0 1988 726 2044 5317 8334 8334 1 DLKPENILVTSGGTVK LRGLDFLHANCIVHRDLKPENILVTSGGTV LKPENILVTSGGTVKLADFGLARIYSYQMA R D L V K L 0 0 1 1 0 0 1 2 0 1 2 2 0 0 1 1 2 0 0 2 0 0 16 1 1669.9251 F8VZZ0;F8VZ51;Q6LC83;A0A024RBB6;P11802;F8VXD2;F8VYH9;F8VTV8;F8VWX7 F8VZZ0 66 81 CDK4 Cyclin-dependent kinase 4 yes no 2 0.0035861 68.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8785100 0 8785100 8785100 0 8785100 0 0 0 1989 331 2045 5318 8335 8335 1 DLKPQNLLIDDK LQGIVFCHSRRVLHRDLKPQNLLIDDKGTI LHRDLKPQNLLIDDKGTIKLADFGLARAFG R D L D K G 0 0 1 3 0 1 0 0 0 1 3 2 0 0 1 0 0 0 0 0 0 0 12 1 1410.7718 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6 A0A024QZP7 128 139 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 1.7766E-07 117.95 2 1.3632 1.5968 4.7593 2 Median 1.3632 1.5968 4.7593 2 0 Median NaN NaN NaN 0 0 Median 233130000 100800000 132320000 233130000 100800000 132320000 0 0 0 1990 25 2046 5319;5320 8336;8337;8338 8338 3 DLLALFNSFKPK RLAVCNMDWDRLKAKDLLALFNSFKPKGGV KAKDLLALFNSFKPKGGVIFSVKIYPSEFG K D L P K G 1 0 1 1 0 0 0 0 0 0 3 2 0 2 1 1 0 0 0 0 0 0 12 1 1391.7813 Q9H501;A0JLU5;Q05C10;A0A087WX71 Q9H501 364 375 ESF1 ESF1 homolog yes no 2 0.00019152 99.568 2 1.0421 1.2177 6.9613 2 Median 1.0421 1.2177 6.9613 2 0 Median NaN NaN NaN 0 0 Median 39087000 17754000 21333000 39087000 17754000 21333000 0 0 0 1991 2033 2047 5321;5322 8339;8340;8341;8342 8340 4 DLLATGTR SFVASYVEIYNETVRDLLATGTRKGQGGEC IYNETVRDLLATGTRKGQGGECEIRRAGPG R D L T R K 1 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 0 0 0 8 0 845.46068 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 471 478 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.027685 60.682 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6109800 6109800 0 6109800 6109800 0 0 0 0 1992 371 2048 5323 8343 8343 1 DLLDLLVEAK LATSFFNERNINITKDLLDLLVEAKQEVPS INITKDLLDLLVEAKQEVPSWLENMAYEHH K D L A K Q 1 0 0 2 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 10 0 1127.6438 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E132;A0A0J9YVQ7;A0A087WVZ1 A0A0D9SFB3 555 564 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 1;2 3.8375E-08 118.18 3 1.6781 1.8123 1.6186 3 Median 1.6781 1.8123 1.6186 3 0 Median NaN NaN NaN 0 0 Median 90928000 34506000 56422000 90928000 34506000 56422000 0 0 0 1993 522 2049 5324;5325;5326 8344;8345;8346;8347;8348 8344 5 DLLFILTAK KIAVMELFRPKGESKDLLFILTAKYNACIL PKGESKDLLFILTAKYNACILEYKQSGESI K D L A K Y 1 0 0 1 0 0 0 0 0 1 3 1 0 1 0 0 1 0 0 0 0 0 9 0 1032.6219 Q16531;F5GY55;B7Z2A1;B4DZP5;F5H2L3;F5GWI0;F5GZY8;F5GYG8 Q16531 75 83 DDB1 DNA damage-binding protein 1 yes no 2 0.0042207 69.812 2 0.74481 0.75962 4.7766 2 Median 0.74481 0.75962 4.7766 2 0 Median NaN NaN NaN 0 0 Median 46086000 27269000 18818000 46086000 27269000 18818000 0 0 0 1994 1770 2050 5327;5328 8349;8350;8351;8352;8353 8350 5 DLLHLPELFSPGMLVR TKKLNEQVTQEQPLKDLLHLPELFSPGMLV LLHLPELFSPGMLVRCVVSSLGITDRGKKS K D L V R C 0 1 0 1 0 0 1 1 1 0 5 0 1 1 2 1 0 0 0 1 0 0 16 0 1835.9968 Q14690;B4DH82;B4DES7 Q14690 135 150 PDCD11 Protein RRP5 homolog yes no 3 0.00014954 48.823 2 1.5564 1.6575 3.4094 2 Median 1.5564 1.6575 3.4094 2 0 Median NaN NaN NaN 0 0 Median 51457000 21494000 29963000 51457000 21494000 29963000 0 0 0 1995 1741 2051 5329;5330 8354;8355;8356 8355 1579 3 DLLHPSLEEEK LKLIVIICFFVQLARDLLHPSLEEEKKKHK QLARDLLHPSLEEEKKKHKKKRLVQSPNSY R D L E K K 0 0 0 1 0 0 3 0 1 0 3 1 0 0 1 1 0 0 0 0 0 0 11 0 1308.6561 H0YMV8;Q71UM5;C9JLI6 H0YMV8 22 32 RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like yes no 2 1.218E-12 137.46 2 2 0.64107 0.63394 18.801 4 Median 0.45862 0.52785 8.1045 2 0 Median 0.85982 0.72348 0.88504 2 0 Median 499620000 311570000 188050000 395190000 254660000 140530000 104430000 56906000 47525000 1996 1298 2052 5331;5332;5333;5334 8357;8358;8359;8360;8361;8362;8363;8364 8358 8 DLLHPSPEEEK ______________________________ PLAKDLLHPSPEEEKRKHKKKRLVQSPNSY K D L E K R 0 0 0 1 0 0 3 0 1 0 2 1 0 0 2 1 0 0 0 0 0 0 11 0 1292.6248 P42677;Q5T4L4 P42677 6 16 RPS27 40S ribosomal protein S27 yes no 2 5.9012E-17 180.07 4 2 1.464 1.4763 19.767 4 Median 1.0443 1.2321 4.3421 2 0 Median 1.9939 1.73 1.2103 2 0 Median 1423400000 631010000 792360000 1066200000 512360000 553840000 357180000 118650000 238520000 1997 1564 2053 5335;5336;5337;5338;5339;5340 8365;8366;8367;8368;8369;8370;8371;8372;8373;8374;8375;8376 8366 12 DLLLNTMSQEEK RLGLIEWLENTVTLKDLLLNTMSQEEKAAY TLKDLLLNTMSQEEKAAYLSDPRAPPCEYK K D L E K A 0 0 1 1 0 1 2 0 0 0 3 1 1 0 0 1 1 0 0 0 0 0 12 0 1419.6915 P78527 P78527 3814 3825 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 6.2116E-05 88.495 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13535000 2529400 11005000 11005000 0 11005000 2529400 2529400 0 1998 1665 2054;2055 5341;5342;5343;5344 8377;8378;8379;8380 8378 1444 4 DLLLVR QSVVLSKMNFESFVKDLLLVRQYRVEVYKN KMNFESFVKDLLLVRQYRVEVYKNRAGNKA K D L V R Q 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 6 0 727.45922 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;V9H068;V9H0D5;V9H023;V9H0B2;Q0ZAJ2;V9H062;V9H015;C9J809 V9H019 91 96 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.049101 74.849 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1999 1237 2056 5345 8381 8381 1 DLLPCFPEGLVK SKEATTTLHMLTLLKDLLPCFPEGLVKSCS LLKDLLPCFPEGLVKSCSETLLRVMTLSHV K D L V K S 0 0 0 1 1 0 1 1 0 0 3 1 0 1 2 0 0 0 0 1 0 0 12 0 1386.7217 B3KMR5;Q5JTH9 B3KMR5 313 324 RRP12 RRP12-like protein yes no 2 0.00098223 74.162 2 2 1.2584 1.1382 6.8622 4 Median 1.1858 1.1974 2.0755 2 0 Median 1.3229 1.0709 3.5105 2 0 Median 74683000 32574000 42110000 54847000 23714000 31133000 19836000 8859700 10976000 2000 907 2057 5346;5347;5348;5349 8382;8383;8384;8385;8386 8383 5 DLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAAR SMDGLGSSCPASHCRDLLPHPVLGRPPAPL QGAVYTDIPAPEAARQCAPPPAPPTSSSAT R D L A R Q 6 2 0 2 0 1 1 3 1 1 4 0 0 0 8 0 1 0 1 2 0 0 33 1 3355.8041 P31276 P31276 71 103 HOXC13 Homeobox protein Hox-C13 yes yes 4 0.00023799 25.657 1 0.44614 0.46212 NaN 1 Median 0.44614 0.46212 NaN 1 0 Median NaN NaN NaN 0 0 Median 12740000 9644200 3095500 12740000 9644200 3095500 0 0 0 2001 1534 2058 5350 8387;8388 8387 2 DLLPSDMAVALLEAQAGTGHIIDPATSAR EEAGQKLSIYNALKKDLLPSDMAVALLEAQ QAGTGHIIDPATSARLTVDEAVRAGLVGPE K D L A R L 6 1 0 3 0 1 1 2 1 2 4 0 1 0 2 2 2 0 0 1 0 0 29 0 2932.4964 Q15149;D3DWL0 Q15149 3184 3212 PLEC;PLEC1 Plectin yes no 3 1.0904E-10 49.793 2 2.2249 2.3546 9.168 2 Median 2.2249 2.3546 9.168 2 0 Median NaN NaN NaN 0 0 Median 71051000 22133000 48918000 71051000 22133000 48918000 0 0 0 2002 1754 2059 5351;5352 8389;8390 8389 1608 2 DLLPVAVEILPVSEK VASSETSSLSLVPPKDLLPVAVEILPVSEK DLLPVAVEILPVSEKNLSLTPSAPSLTLEA K D L E K N 1 0 0 1 0 0 2 0 0 1 3 1 0 0 2 1 0 0 0 3 0 0 15 0 1620.9338 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4 A0A0A0MS59 2325 2339 SRCAP Helicase SRCAP yes no 2 4.3705E-05 85.845 2 0.9562 0.96049 1.9015 2 Median 0.9562 0.96049 1.9015 2 0 Median NaN NaN NaN 0 0 Median 14353000 7116700 7236400 14353000 7116700 7236400 0 0 0 2003 476 2060 5353;5354 8391;8392 8392 2 DLLQADQLGSLK LKDGIQLSEYLPEVKDLLQADQLGSLKSNP EVKDLLQADQLGSLKSNPYFEFVLKANYEY K D L L K S 1 0 0 2 0 2 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 12 0 1299.7034 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 1108 1119 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.0068504 71.349 1 1.3519 1.3356 NaN 1 Median 1.3519 1.3356 NaN 1 0 Median NaN NaN NaN 0 0 Median 9360000 3544800 5815300 9360000 3544800 5815300 0 0 0 2004 1070 2061 5355 8393 8393 0 DLLQDLK IPAATTSLITMLNAKDLLQDLKFVPSDEKK LITMLNAKDLLQDLKFVPSDEKKKQGCQRE K D L L K F 0 0 0 2 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 843.47018 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9 Q6P1J9 379 385 CDC73 Parafibromin yes no 2 0.028306 72.138 2 1.8579 1.9591 5.5056 2 Median 1.8579 1.9591 5.5056 2 0 Median NaN NaN NaN 0 0 Median 68435000 25967000 42468000 68435000 25967000 42468000 0 0 0 2005 1851 2062 5356;5357 8394;8395;8396;8397 8395 4 DLLQQLLPK FSNESTAVKERDAVKDLLQQLLPKFKRKAN ERDAVKDLLQQLLPKFKRKANKELEEKNRM K D L P K F 0 0 0 1 0 2 0 0 0 0 4 1 0 0 1 0 0 0 0 0 0 0 9 0 1066.6386 B4DS87;B4DSG6;B2R7G4;P32780 B4DS87 94 102 GTF2H1 General transcription factor IIH subunit 1 yes no 2 0.0013315 86.794 2 1 0.70197 0.63693 0.75066 2 Median 0.6373 0.63356 NaN 1 0 Median 0.77322 0.64032 NaN 1 0 Median 9841200 7064100 2777100 8137100 6148200 1988900 1704100 915840 788220 2006 851 2063 5358;5359;5360 8398;8399;8400 8399 3 DLLSCNHTVLDPDLR HCYPEYLSNFPQEVKDLLSCNHTVLDPDLR DLLSCNHTVLDPDLRMTLYTHIVTDIKNIN K D L L R M 0 1 1 3 1 0 0 0 1 0 4 0 0 0 1 1 1 0 0 1 0 0 15 0 1766.8621 E7EW05;B4DT66;Q9NVU7 E7EW05 83 97 SDAD1 Protein SDA1 homolog yes no 3 0.0085726 28.212 2 0.81659 0.71451 14.325 2 Median NaN NaN NaN 0 0 Median 0.81659 0.71451 14.325 2 0 Median 4554500 2321600 2232900 0 0 0 4554500 2321600 2232900 2007 1032 2064 5361;5362 8401;8402 8401 2 DLLTPPADKPGQDNR LDLRWAVGIKDPQIRDLLTPPADKPGQDNR DLLTPPADKPGQDNRSKLRNMTDFRLAGLD R D L N R S 1 1 1 3 0 1 0 1 0 0 2 1 0 0 3 0 1 0 0 0 0 0 15 1 1635.8216 I3VM54;I3VM53;Q9Y2K7 I3VM54 1004 1018 KDM2A Lysine-specific demethylase 2A yes no 3 0.0010124 45.614 1 0.46643 0.5491 NaN 1 Median 0.46643 0.5491 NaN 1 0 Median NaN NaN NaN 0 0 Median 33993000 23168000 10825000 33993000 23168000 10825000 0 0 0 2008 1323 2065 5363 8403 8403 1 DLLVNSGPLAVR STAVSYLEVYNEQIRDLLVNSGPLAVREDT QIRDLLVNSGPLAVREDTQKGVVVHGLTLH R D L V R E 1 1 1 1 0 0 0 1 0 0 3 0 0 0 1 1 0 0 0 2 0 0 12 0 1252.7139 B2R6H3;Q8NI77;Q4G194 B2R6H3 169 180 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 0.00047768 70.399 1 1 0.54619 0.50713 5.2228 2 Median 0.52935 0.5262 NaN 1 0 Median 0.56356 0.48874 NaN 1 0 Median 18333000 10874000 7459300 16242000 9723300 6518400 2091700 1150800 940910 2009 842 2066 5364;5365 8404;8405 8404 2 DLMVGDEASELR ______________________________ ______________________________ M D L L R S 1 1 0 2 0 0 2 1 0 0 2 0 1 0 0 1 0 0 0 1 0 0 12 0 1333.6184 B4DHK9;P61160 B4DHK9 2 13 ACTR2 Actin-related protein 2 yes no 2 0.00024061 85.355 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21834000 0 21834000 21834000 0 21834000 0 0 0 2010 976 2067 5366;5367 8406;8407 8407 780 2 DLNDRPVGPR IVAMINYNEAMAAIKDLNDRPVGPRKVKLT MAAIKDLNDRPVGPRKVKLTLL________ K D L P R K 0 2 1 2 0 0 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 10 1 1137.5891 B9ZVT1;Q8IXT5 B9ZVT1 865 874 RBM12B RNA-binding protein 12B yes no 2 0.0038952 82.279 1 0.70985 0.79377 NaN 1 Median 0.70985 0.79377 NaN 1 0 Median NaN NaN NaN 0 0 Median 26333000 15676000 10658000 26333000 15676000 10658000 0 0 0 2011 1122 2068 5368 8408 8408 1 DLNFEVR DHVPLATPNGDVLIRDLNFEVRSGANVLIC PNGDVLIRDLNFEVRSGANVLICGPNGCGK R D L V R S 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 0 891.44503 B4DL07;P28288;B4DZ22 B4DL07 482 488 ABCD3 ATP-binding cassette sub-family D member 3 yes no 2 0.045012 60.788 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4992800 0 4992800 4992800 0 4992800 0 0 0 2012 994 2069 5369 8409 8409 1 DLNILGR LFREHCVCVQGNYIKDLNILGRDLSKTIII CVQGNYIKDLNILGRDLSKTIIIDNSPQAF K D L G R D 0 1 1 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 799.4552 A0A024R5Q8;Q05D32 A0A024R5Q8 389 395 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.026656 75.311 2 0.96348 0.98483 0.78237 2 Median 0.96348 0.98483 0.78237 2 0 Median NaN NaN NaN 0 0 Median 22626000 11283000 11343000 22626000 11283000 11343000 0 0 0 2013 187 2070 5370;5371 8410;8411 8410 2 DLNSQADSLMTSSAFDTSQVK QLLEADISAHEDRLKDLNSQADSLMTSSAF DSLMTSSAFDTSQVKDKRDTINGRFQKIKS K D L V K D 2 0 1 3 0 2 0 0 0 0 2 1 1 1 0 5 2 0 0 1 0 0 21 0 2244.0216 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1701 1721 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 5.0643E-08 67.416 2 2.1182 2.1576 NaN 1 Median 2.1182 2.1576 NaN 1 0 Median NaN NaN NaN 0 0 Median 20394000 3028800 17365000 20394000 3028800 17365000 0 0 0 2014 523 2071 5372;5373 8412;8413;8414 8414 385 3 DLNSYLEDK VDGHSSKNDIHTLLKDLNSYLEDKVYLTGY IHTLLKDLNSYLEDKVYLTGYNFTLADILL K D L D K V 0 0 1 2 0 0 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1095.5084 H0YAL7;D6RBD7;C9J1V9;O43324 H0YAL7 84 92 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2 0.011808 65.305 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6852800 0 6852800 6852800 0 6852800 0 0 0 2015 1127 2072 5374 8415 8415 1 DLNWIHVQDAEEAWK TLRLCEDQNGNPYVKDLNWIHVQDAEEAWK DLNWIHVQDAEEAWKLLKVGRKNQSFASTH K D L W K L 2 0 1 2 0 1 2 0 1 1 1 1 0 0 0 0 0 2 0 1 0 0 15 0 1852.8744 O95235 O95235 343 357 KIF20A Kinesin-like protein KIF20A yes yes 3 0.00020845 52.372 2 2 0.83015 0.7561 22.59 4 Median 0.63903 0.65245 0.98769 2 0 Median 1.1753 0.94687 11.956 2 0 Median 38370000 18832000 19538000 22094000 11563000 10531000 16276000 7269300 9006900 2016 1421 2073 5375;5376;5377;5378 8416;8417;8418;8419;8420;8421;8422;8423 8418 8 DLNYCFSGMSDHR GYNDGYGFGSDRFGRDLNYCFSGMSDHRYG GRDLNYCFSGMSDHRYGDGGSTFQSTTGHC R D L H R Y 0 1 1 2 1 0 0 1 1 0 1 0 1 1 0 2 0 0 1 0 0 0 13 0 1600.6399 E9PCY7;G8JLB6;P31943;H0YB39;H0YBG7;Q68DG4;H0YBD7;P55795;B4DFK9;B4DP00 E9PCY7 263 275 HNRNPH1;DKFZp686A15170;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 7.8221E-07 110.66 4 1.8957 2.1787 26.578 3 Median 1.8957 2.1787 26.578 3 0 Median NaN NaN NaN 0 0 Median 163020000 51144000 111880000 163020000 51144000 111880000 0 0 0 2017 1231;1617 2074 5379;5380;5381;5382 8424;8425;8426;8427;8428;8429 8429 945 6 DLPDVQELITQVR NEVNSDAGAFKNSLKDLPDVQELITQVRSE LKDLPDVQELITQVRSEKCSLQAAAILDAN K D L V R S 0 1 0 2 0 2 1 0 0 1 2 0 0 0 1 0 1 0 0 2 0 0 13 0 1524.8148 Q9UHB9;B4DVI7;Q96K98;Q96K97 Q9UHB9 509 521 SRP68 Signal recognition particle subunit SRP68 yes no 2 6.6973E-07 111.86 2 0.91274 0.92567 3.9094 2 Median 0.91274 0.92567 3.9094 2 0 Median NaN NaN NaN 0 0 Median 36098000 18629000 17469000 36098000 18629000 17469000 0 0 0 2018 2101 2075 5383;5384 8430;8431 8431 2 DLPEHAVLK DYKQRTQKKAEVEGKDLPEHAVLKMKGNFT AEVEGKDLPEHAVLKMKGNFTLPEVAECFD K D L L K M 1 0 0 1 0 0 1 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1020.5604 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 586 594 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.0015079 84.498 2 2 1.0496 1.0202 51.897 4 Median 1.3559 1.6059 3.1579 2 0 Median 0.81813 0.65412 1.8454 2 0 Median 1308600000 560570000 748040000 1269000000 539350000 729610000 39649000 21221000 18427000 2019 999 2076 5385;5386;5387;5388 8432;8433;8434;8435;8436 8436 5 DLPERDQFR NQLSRAVRELARRLRDLPERDQFRVRASAA LARRLRDLPERDQFRVRASAALLDKLYALG R D L F R V 0 2 0 2 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 9 1 1174.5731 Q9NV31 Q9NV31 64 72 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 7.0105E-05 124.23 2 0.68077 0.77584 NaN 1 Median 0.68077 0.77584 NaN 1 0 Median NaN NaN NaN 0 0 Median 40372000 21985000 18387000 40372000 21985000 18387000 0 0 0 2020 2073 2077 5389;5390 8437;8438 8438 2 DLPFETLEVEAK NLRSFTKDAHALIYKDLPFETLEVEAKVAL IYKDLPFETLEVEAKVALEIFQHSKYKVDF K D L A K V 1 0 0 1 0 0 3 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 12 0 1389.7028 C9JG87;Q9NYK5 C9JG87 203 214 MRPL39 39S ribosomal protein L39, mitochondrial yes no 2 0.00021804 82.417 2 1.3855 1.428 NaN 1 Median 1.3855 1.428 NaN 1 0 Median NaN NaN NaN 0 0 Median 16742000 4110800 12631000 16742000 4110800 12631000 0 0 0 2021 1134 2078 5391;5392 8439;8440;8441;8442 8442 4 DLPFVEEIK LCKTQKQSTTTLNKKDLPFVEEIKEGECQV TTLNKKDLPFVEEIKEGECQVKKVNKMTSK K D L I K E 0 0 0 1 0 0 2 0 0 1 1 1 0 1 1 0 0 0 0 1 0 0 9 0 1088.5754 Q562F6;B7Z7S9 Q562F6 1055 1063 SGOL2 Shugoshin-like 2 yes no 2 0.0091583 60.436 2 1.0668 1.0622 3.2814 2 Median 1.0668 1.0622 3.2814 2 0 Median NaN NaN NaN 0 0 Median 39091000 19773000 19318000 39091000 19773000 19318000 0 0 0 2022 1795 2079 5393;5394 8443;8444;8445;8446;8447 8444 5 DLPIPGTISSAGDGNSESR SPVEKRRRGRPPKARDLPIPGTISSAGDGN PGTISSAGDGNSESRTQPPPHPSPLTPLPP R D L S R T 1 1 1 2 0 0 1 3 0 2 1 0 0 0 2 4 1 0 0 0 0 0 19 0 1871.8861 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4 A0A0A0MS59 2688 2706 SRCAP Helicase SRCAP yes no 2 0.059442 20.427 1 1.3514 1.1958 NaN 1 Median NaN NaN NaN 0 0 Median 1.3514 1.1958 NaN 1 0 Median 2421100 1149000 1272100 0 0 0 2421100 1149000 1272100 2023 476 2080 5395 8448 8448 1 DLPLAQGIK KQYMRRSTCTINYSKDLPLAQGIKFQ____ TINYSKDLPLAQGIKFQ_____________ K D L I K F 1 0 0 1 0 1 0 1 0 1 2 1 0 0 1 0 0 0 0 0 0 0 9 0 953.55458 A0A1B0GTY9;A0A140T9V3;A0A1B0GTG2;A0A1B0GW77;P49419;A0A1B0GV49;A0A1B0GTJ4 A0A1B0GTY9 469 477 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.051865 46.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5083500 0 5083500 5083500 0 5083500 0 0 0 2024 598 2081 5396 8449 8449 1 DLPLLLFR GLNGAVFRPEVPLRRDLPLLLFRTQTSDPA PEVPLRRDLPLLLFRTQTSDPAMLPTMIGL R D L F R T 0 1 0 1 0 0 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 8 0 985.59605 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3;Q96RV7;Q96RV6 O43175 462 469 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.0048051 92.467 3 3.0342 3.2127 0.87704 2 Median 3.0342 3.2127 0.87704 2 0 Median NaN NaN NaN 0 0 Median 62211000 17223000 44988000 62211000 17223000 44988000 0 0 0 2025 1382 2082 5397;5398;5399 8450;8451;8452;8453;8454 8454 5 DLPLNELEVAK D L A K 1 0 1 1 0 0 2 0 0 0 3 1 0 0 1 0 0 0 0 1 0 0 11 0 1239.6711 REV__Q5THJ4 yes yes 2 0.015675 54.416 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14276000 0 14276000 14276000 0 14276000 0 0 0 + 2026 2180 2083 5400 8455 8455 1 DLPNALDEK PQLQGIPVLVLGNKRDLPNALDEKQLIEKM VLGNKRDLPNALDEKQLIEKMNLSAIQDRE R D L E K Q 1 0 1 2 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 9 0 1013.5029 B4DQT8;A0A024R2D4;B4E1J8;Q9NVJ2 B4DQT8 124 132 ARL8B ADP-ribosylation factor-like protein 8B yes no 2 0.0085335 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5966100 0 5966100 5966100 0 5966100 0 0 0 2027 109 2084 5401 8456 8456 1 DLPRPSEVNETILRPLNVEPPLTDLQK ERVKEMKRMHKAVQKDLPRPSEVNETILRP LRPLNVEPPLTDLQKSEELIKKEMITMLHY K D L Q K S 0 2 2 2 0 1 3 0 0 1 5 1 0 0 5 1 2 0 0 2 0 0 27 2 3082.6663 B4DSH1;B3KY60;Q99459 B4DSH1 517 543 CDC5L Cell division cycle 5-like protein yes no 4 0.055918 13.702 1 0.89225 0.83547 NaN 1 Median NaN NaN NaN 0 0 Median 0.89225 0.83547 NaN 1 0 Median 8381900 4222500 4159500 0 0 0 8381900 4222500 4159500 2028 957 2085 5402 8457 8457 1 DLPVTEAVFSALVTGHAR DIEGASKILGFMKTKDLPVTEAVFSALVTG VTEAVFSALVTGHARAGDMENAENILTVMR K D L A R A 3 1 0 1 0 0 1 1 1 0 2 0 0 1 1 1 2 0 0 3 0 0 18 0 1881.9949 E5KNY5;P42704;B4DSR0;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 227 244 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 1.2782E-05 62.891 3 2.0765 2.237 13.746 3 Median 2.0765 2.237 13.746 3 0 Median NaN NaN NaN 0 0 Median 55704000 16086000 39619000 55704000 16086000 39619000 0 0 0 2029 1207 2086 5403;5404;5405 8458;8459;8460;8461;8462 8462 5 DLQANVEHLVQK GADAAYIFEEPFTIRDLQANVEHLVQKMKT TIRDLQANVEHLVQKMKTTVKRGLVLRNEK R D L Q K M 1 0 1 1 0 2 1 0 1 0 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1392.7361 A0A024R0Y5;P08237;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9 A0A024R0Y5 604 615 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 4.2479E-30 174.57 2 2.4594 2.6876 6.7287 2 Median 2.4594 2.6876 6.7287 2 0 Median NaN NaN NaN 0 0 Median 86690000 23254000 63436000 86690000 23254000 63436000 0 0 0 2030 61 2087 5406;5407 8463;8464;8465 8464 3 DLQDELAGNSEQR QEQIKQRTKLELKAKDLQDELAGNSEQRKR AKDLQDELAGNSEQRKRLLKERQKLLEKIE K D L Q R K 1 1 1 2 0 2 2 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 13 0 1473.6696 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 311 323 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.00013111 73.848 2 2 0.79274 0.76774 16.026 4 Median 0.77507 0.78926 13.818 2 0 Median 0.83674 0.70756 21.452 2 0 Median 51105000 27955000 23150000 44137000 24084000 20053000 6967500 3870800 3096800 2031 803 2088 5408;5409;5410;5411 8466;8467;8468;8469;8470;8471;8472 8468 7 DLQHPNEFIR RLLHEMILVCDAYRKDLQHPNEFIRGSTLR DAYRKDLQHPNEFIRGSTLRFLCKLKEAEL K D L I R G 0 1 1 1 0 1 1 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 10 0 1267.6309 P53618;E9PP73;E9PP63;E9PKQ1 P53618 108 117 COPB1 Coatomer subunit beta yes no 2 0.00013049 96.342 2 1.5456 1.5619 7.1645 2 Median 1.5456 1.5619 7.1645 2 0 Median NaN NaN NaN 0 0 Median 31237000 11414000 19823000 31237000 11414000 19823000 0 0 0 2032 1606 2089 5412;5413 8473;8474;8475;8476 8475 4 DLQIEVQEELKR QLRAEILKKRALLDKDLQIEVQEELKRDLK LDKDLQIEVQEELKRDLKIKKEKDLMQLAQ K D L K R D 0 1 0 1 0 2 3 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 12 1 1498.7991 E7ETD6;Q12830;Q9H5E0;J3QQQ8;J3KSK9;E9PE19;B4DJV8 E7ETD6 2480 2491 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.043963 42.718 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1167900 0 1167900 0 0 0 1167900 0 1167900 2033 1224 2090 5414 8477 8477 1 DLQMVNISLR IRARPRKISSPTGSKDLQMVNISLRVLSRP PTGSKDLQMVNISLRVLSRPNAQELPSMYQ K D L L R V 0 1 1 1 0 1 0 0 0 1 2 0 1 0 0 1 0 0 0 1 0 0 10 0 1187.6332 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7 J3KPX7 98 107 PHB2 Prohibitin-2 yes no 2 4.007E-12 140.75 4 5 2.1439 2.2546 27.443 6 Median 2.2929 2.63 6.5753 3 0 Median 1.8816 1.5963 23.066 3 0 Median 582690000 215600000 367100000 570710000 210890000 359820000 11988000 4705900 7281900 2034 1328 2091;2092 5415;5416;5417;5418;5419;5420;5421;5422;5423 8478;8479;8480;8481;8482;8483;8484;8485;8486;8487;8488;8489 8482 1003 10 DLQNVNITLR CRSRPRNVPVITGSKDLQNVNITLRILFRP ITGSKDLQNVNITLRILFRPVASQLPRIFT K D L L R I 0 1 2 1 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1184.6513 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0;A8K9G2 Q6PUJ7 84 93 HEL-S-54e;PHB Prohibitin yes no 2 2.1513E-22 168.83 2 2 1.9461 1.9272 19.636 4 Median 1.4196 1.6603 4.1207 2 0 Median 2.7442 2.3033 8.2502 2 0 Median 673670000 247750000 425920000 632740000 236680000 396060000 40931000 11067000 29864000 2035 730 2093 5424;5425;5426;5427 8490;8491;8492;8493;8494;8495;8496 8491 7 DLQPFPTCQALVYR NVDPEDLIPKLPRPRDLQPFPTCQALVYRG RDLQPFPTCQALVYRGHSDLVRCLSVSPGG R D L Y R G 1 1 0 1 1 2 0 0 0 0 2 0 0 1 2 0 1 0 1 1 0 0 14 0 1706.845 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 397 410 BOP1 Ribosome biogenesis protein BOP1 yes no 2 2.4473E-06 105.46 2 2 0.9776 0.95417 11.279 4 Median 0.79331 0.85576 6.0361 2 0 Median 1.1993 1.0299 1.4418 2 0 Median 145710000 73426000 72281000 82558000 45077000 37481000 63148000 28349000 34799000 2036 1726 2094 5428;5429;5430;5431 8497;8498;8499;8500;8501;8502;8503;8504 8502 8 DLQSNVEHLTEK GADAAYIFEEPFDIRDLQSNVEHLTEKMKT DIRDLQSNVEHLTEKMKTTIQRGLVLRNES R D L E K M 0 0 1 1 0 1 2 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1411.6943 Q01813;Q8WTZ9;O14943;B1APP8 Q01813 614 625 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 1.5783E-22 152.47 2 2.2371 2.5119 4.4703 2 Median 2.2371 2.5119 4.4703 2 0 Median NaN NaN NaN 0 0 Median 236880000 75095000 161790000 236880000 75095000 161790000 0 0 0 2037 1677 2095 5432;5433 8505;8506;8507;8508 8507 4 DLRPSALPFVASLIR FEQALTGAFMSAVIKDLRPSALPFVASLIR DLRPSALPFVASLIRHYTMVAVAQQCGPFL K D L I R H 2 2 0 1 0 0 0 0 0 1 3 0 0 1 2 2 0 0 0 1 0 0 15 1 1653.9566 F2Z2U4;Q59FH1;H0Y4W2;Q9Y4A5 F2Z2U4 1032 1046 TRRAP Transformation/transcription domain-associated protein yes no 3 0.00030946 63.128 2 0.54132 0.61992 NaN 1 Median 0.54132 0.61992 NaN 1 0 Median NaN NaN NaN 0 0 Median 8430400 7100900 1329500 8430400 7100900 1329500 0 0 0 2038 1253 2096 5434;5435 8509;8510;8511 8509 3 DLSDAIEQTFQR GSSVEISLENSELFKDLSDAIEQTFQRRNS LFKDLSDAIEQTFQRRNSETKVRRSTRLQK K D L Q R R 1 1 0 2 0 2 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 12 0 1421.6787 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 857 868 CDCA2 Cell division cycle-associated protein 2 yes no 2 1.6336E-29 170.99 2 2 0.91224 0.84858 40.601 4 Median 0.5644 0.5851 24.853 2 0 Median 1.3702 1.1185 11.337 2 0 Median 65779000 33132000 32647000 38837000 22007000 16830000 26943000 11125000 15817000 2039 1233 2097 5436;5437;5438;5439 8512;8513;8514;8515;8516;8517;8518;8519 8513 8 DLSELGSVR RAQFEQLKDGKTTVKDLSELGSVRTLLQGS GKTTVKDLSELGSVRTLLQGSGCLAGIYLE K D L V R T 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 2 0 0 0 1 0 0 9 0 974.50327 Q15149;D3DWL0 Q15149 3477 3485 PLEC;PLEC1 Plectin yes no 2 0.041169 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2040 1754 2098 5440 8520 8520 1 DLSGGLGGQEEEEEQR AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQ LSGGLGGQEEEEEQRWLDALEKGELDDNGD R D L Q R W 0 1 0 1 0 2 5 4 0 0 2 0 0 0 0 1 0 0 0 0 0 0 16 0 1731.7548 J3KQ70;B4DJ31;Q9C086;B8ZZ93;B8ZZH7;F8WCL7 J3KQ70 136 151 INO80B-WBP1;INO80B INO80 complex subunit B yes no 2 7.5721E-07 100.38 4 0.89506 0.91225 NaN 1 Median 0.89506 0.91225 NaN 1 0 Median NaN NaN NaN 0 0 Median 9740800 2795000 6945900 9740800 2795000 6945900 0 0 0 2041 985 2099 5441;5442;5443;5444 8521;8522;8523;8524 8522 4 DLSHIGDAVVISCAK CVVKMPSGEFACICRDLSHIGDAVVISCAK DLSHIGDAVVISCAKDGVKFSASGELGNGN R D L A K D 2 0 0 2 1 0 0 1 1 2 1 1 0 0 0 2 0 0 0 2 0 0 15 0 1583.7977 Q6FI35;Q6FHF5;P12004 Q6FI35 150 164 PCNA Proliferating cell nuclear antigen yes no 2;3 6.1387E-07 98.337 5 3 0.58596 0.46867 27.339 5 Median 0.65687 0.69667 2.3787 2 0 Median 0.55885 0.43583 9.4926 3 0 Median 66764000 43538000 23227000 56991000 36940000 20051000 9773000 6597400 3175600 2042 1473 2100 5445;5446;5447;5448;5449;5450;5451;5452 8525;8526;8527;8528;8529;8530;8531;8532;8533;8534;8535;8536;8537 8527 13 DLSLENGAHAYNR SEEGYLAKVKSLLNKDLSLENGAHAYNREV NKDLSLENGAHAYNREVNGRLENGNQARSE K D L N R E 2 1 2 1 0 0 1 1 1 0 2 0 0 0 0 1 0 0 1 0 0 0 13 0 1458.6852 A0A024R7E3;P26358;Q59FP7;K7EJL0 A0A024R7E3 151 163 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.034911 32.523 1 0.99978 0.86937 NaN 1 Median NaN NaN NaN 0 0 Median 0.99978 0.86937 NaN 1 0 Median 965820 509150 456670 0 0 0 965820 509150 456670 2043 222 2101 5453 8538 8538 1 DLSSEELAAFQK SIIGSARSLGIRVVKDLSSEELAAFQKERA VVKDLSSEELAAFQKERAIFLAAQKEADLA K D L Q K E 2 0 0 1 0 1 2 0 0 0 2 1 0 1 0 2 0 0 0 0 0 0 12 0 1336.6511 Q53G19;Q9Y3B7 Q53G19 158 169 MRPL11 39S ribosomal protein L11, mitochondrial yes no 2 0.0007062 76.943 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4692600 4692600 0 4692600 4692600 0 0 0 0 2044 1785 2102 5454;5455;5456 8539;8540;8541 8541 3 DLSSSEPVHAK QLMKDLGQRVSFLTRDLSSSEPVHAKKRKH FLTRDLSSSEPVHAKKRKHERIIDKYEKIP R D L A K K 1 0 0 1 0 0 1 0 1 0 1 1 0 0 1 3 0 0 0 1 0 0 11 0 1168.5724 A8K905;Q8WTT2 A8K905 113 123 NOC3L Nucleolar complex protein 3 homolog yes no 2 4.9514E-22 143.7 3 2 1.2058 1.1373 5.3496 2 Median 1.083 1.1812 NaN 1 0 Median 1.3425 1.0951 NaN 1 0 Median 136730000 62489000 74244000 126430000 60087000 66346000 10300000 2402000 7897800 2045 780 2103 5457;5458;5459;5460;5461 8542;8543;8544;8545;8546;8547;8548;8549 8546 8 DLSSVQTLLTK IGEKENSLKTDDYGRDLSSVQTLLTKQETF DYGRDLSSVQTLLTKQETFDAGLQAFQQEG R D L T K Q 0 0 0 1 0 1 0 0 0 0 3 1 0 0 0 2 2 0 0 1 0 0 11 0 1203.6711 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16;Q14917 A0A0D9SF54 1992 2002 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0014769 67.207 1 1.6984 1.7643 NaN 1 Median 1.6984 1.7643 NaN 1 0 Median NaN NaN NaN 0 0 Median 16955000 4141300 12813000 16955000 4141300 12813000 0 0 0 2046 523 2104 5462 8550;8551 8551 2 DLSTVEALQNLK CPNLTYLNLSGNKIKDLSTVEALQNLKNLK KIKDLSTVEALQNLKNLKSLDLFNCEITNL K D L L K N 1 0 1 1 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 12 0 1329.714 Q53F20;Q9BTT0;E9PPH5 Q53F20 102 113 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 5.5939E-13 134.25 2 2.2729 2.5226 3.6364 2 Median 2.2729 2.5226 3.6364 2 0 Median NaN NaN NaN 0 0 Median 114480000 30910000 83568000 114480000 30910000 83568000 0 0 0 2047 1784 2105 5463;5464 8552;8553;8554;8555;8556 8556 5 DLSYCLSGMYDHR GLSDGYGFTTDLFGRDLSYCLSGMYDHRYG GRDLSYCLSGMYDHRYGDSEFTVQSTTGHC R D L H R Y 0 1 0 2 1 0 0 1 1 0 2 0 1 0 0 2 0 0 2 0 0 0 13 0 1615.6759 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 263 275 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2 6.8762E-05 82.417 2 1.4891 1.4606 NaN 1 Median 1.4891 1.4606 NaN 1 0 Median NaN NaN NaN 0 0 Median 13973000 5224500 8748700 13973000 5224500 8748700 0 0 0 2048 234 2106 5465;5466 8557;8558;8559;8560 8559 173 4 DLTDYLMK YALPHAILRLDLAGRDLTDYLMKILTERGY RLDLAGRDLTDYLMKILTERGYSFTTTAER R D L M K I 0 0 0 2 0 0 0 0 0 0 2 1 1 0 0 0 1 0 1 0 0 0 8 0 997.47903 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q13707;B4DUI8;Q562R1;K4EQ44;K4EP00;K4ENJ5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;B3KWQ3;Q6PJ43;B7ZAP6;A0AUL6;P63261;B4E3A4;I3L3I0;I3L1U9;I3L4N8;V9HVZ7 P63261 184 191 ACTA2;ACTG2;ACTA1;ACTC1;ACTBL2;PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 1;2 0.00036889 106.36 6 6 2.7206 2.2258 29.954 12 Median 2.7206 3.2008 34.295 6 0 Median 2.7142 2.1738 18.355 6 0 Median 2925600000 792610000 2133000000 2785400000 749490000 2035900000 140170000 43110000 97059000 2049 1624;1656;1100;2186 2107;2108 5467;5468;5469;5470;5471;5472;5473;5474;5475;5476;5477;5478 8561;8562;8563;8564;8565;8566;8567;8568;8569;8570;8571;8572;8573;8574;8575;8576;8577;8578;8579;8580;8581;8582;8583;8584 8565 839 24 DLTEALDEDADPTK EEEVAKEQLTDADTKDLTEALDEDADPTKS KDLTEALDEDADPTKSALSAVASLAAAWPQ K D L T K S 2 0 0 4 0 0 2 0 0 0 2 1 0 0 1 0 2 0 0 0 0 0 14 0 1531.689 D3DS96;Q9NRL2 D3DS96 503 516 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 5.4586E-15 122.7 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19614000 0 19614000 17329000 0 17329000 2285100 0 2285100 2050 1187 2109 5479;5480;5481 8585;8586;8587 8586 3 DLTGVQNLR IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL SEDYGRDLTGVQNLRKKHKRLEAELAAHEP R D L L R K 0 1 1 1 0 1 0 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1014.5458 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16;Q14917 A0A0D9SF54 1780 1788 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.04983 47.082 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 528500 0 528500 0 0 0 528500 0 528500 2051 523 2110 5482 8588 8588 1 DLTIPESSTVK EQSPRKRGRPPKDEKDLTIPESSTVKGMMA KDEKDLTIPESSTVKGMMAGPMAAFKWQPT K D L V K G 0 0 0 1 0 0 1 0 0 1 1 1 0 0 1 2 2 0 0 1 0 0 11 0 1188.6238 D3DUE6;K7EMM8;D3DUE7;Q49A26;K7EPU6 D3DUE7 202 212 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2 0.0011039 85.731 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 172310000 0 172310000 134420000 0 134420000 37889000 0 37889000 2052 1194;1193 2111 5483;5484;5485;5486 8589;8590;8591;8592 8590 4 DLTLDQAYSYAVENAK PLVIQMTDDEKYLWKDLTLDQAYSYAVENA LTLDQAYSYAVENAKDIIACGFDINKTFIF K D L A K D 3 0 1 2 0 1 1 0 0 0 2 1 0 0 0 1 1 0 2 1 0 0 16 0 1799.8578 G3V3H8;G3V3Y5;A0A024R6K8;P23381 G3V3H8 164 179 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 2 0.0018658 62.088 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6672100 0 6672100 6672100 0 6672100 0 0 0 2053 204 2112 5487 8593 8593 1 DLTNSHFFLFDFQK FLRAVTKLGFKIVSKDLTNSHFFLFDFQKT KDLTNSHFFLFDFQKTGPPLVGPKAQLSGL K D L Q K T 0 0 1 2 0 1 0 0 1 0 2 1 0 4 0 1 1 0 0 0 0 0 14 0 1757.8413 O43159;E9PPP6 O43159 418 431 RRP8 Ribosomal RNA-processing protein 8 yes no 3 4.8539E-05 75.462 2 2 1.364 1.2166 73.264 4 Median 2.2726 2.2833 5.176 2 0 Median 0.82056 0.64353 6.1995 2 0 Median 29203000 12386000 16816000 20376000 7513800 12862000 8826700 4872500 3954100 2054 1380 2113 5488;5489;5490;5491 8594;8595;8596;8597;8598;8599;8600 8595 7 DLTNVQNLQK LYEVEGHLASDDYGKDLTNVQNLQKKHALL DDYGKDLTNVQNLQKKHALLEADVAAHQDR K D L Q K K 0 0 2 1 0 2 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1171.6197 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 709 718 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 1.7025E-15 133.58 2 2.3975 2.4379 NaN 1 Median 2.3975 2.4379 NaN 1 0 Median NaN NaN NaN 0 0 Median 29371000 4252800 25119000 29371000 4252800 25119000 0 0 0 2055 523 2114 5492;5493 8601;8602 8601 2 DLTSVNILLK LHGLESQIQSDDYGKDLTSVNILLKKQQML DDYGKDLTSVNILLKKQQMLENQMEVRKKE K D L L K K 0 0 1 1 0 0 0 0 0 1 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1114.6598 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;O15020 D6W5C0 1325 1334 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2 0.00017639 81.548 3 1 1.683 1.7108 6.5176 2 Median 1.683 1.7108 6.5176 2 0 Median NaN NaN NaN 0 0 Median 20301000 7241700 13059000 19469000 7241700 12227000 831640 0 831640 2056 415;1372 2115 5494;5495;5496;5497 8603;8604;8605;8606;8607;8608;8609 8605 7 DLTTAGAVTQCYR YDSRSGTHNMYREYRDLTTAGAVTQCYRDM YRDLTTAGAVTQCYRDMGARHRARAHSIQI R D L Y R D 2 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 3 0 1 1 0 0 13 0 1454.6824 M0R117;B4DM74;Q02543;M0R3D6;M0R1A7;B2R4C0;Q32XH3;M0R0P7 M0R117 99 111 RPL18A 60S ribosomal protein L18a yes no 2 1.9219E-23 152.54 2 2 0.90791 0.9252 2.7343 4 Median 0.80074 0.93969 2.069 2 0 Median 1.0464 0.908 2.526 2 0 Median 857840000 462250000 395590000 707430000 388940000 318490000 150410000 73307000 77100000 2057 1003 2116 5498;5499;5500;5501 8610;8611;8612;8613;8614;8615;8616;8617;8618;8619;8620;8621;8622;8623;8624 8613 15 DLVAIEAK AGVMALQRKLTGMERDLVAIEAKLSDLQKE KLTGMERDLVAIEAKLSDLQKEAEKLESEH R D L A K L 2 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 857.48583 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 918 925 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.047267 55.531 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2058 415 2117 5502 8625 8625 1 DLVAQAPLK KIHPLVRLPLATIVKDLVAQAPLKPKTPRG LATIVKDLVAQAPLKPKTPRGTKTPINRNQ K D L L K P 2 0 0 1 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 953.55458 A0A024R534;O94776 A0A024R534 523 531 MTA2 Metastasis-associated protein MTA2 yes no 2 0.004147 69.998 2 0.74563 0.81194 1.0918 2 Median 0.74563 0.81194 1.0918 2 0 Median NaN NaN NaN 0 0 Median 83843000 47309000 36534000 83843000 47309000 36534000 0 0 0 2059 168 2118 5503;5504 8626;8627;8628 8626 3 DLVAQAPLKPK KIHPLVRLPLATIVKDLVAQAPLKPKTPRG TIVKDLVAQAPLKPKTPRGTKTPINRNQLS K D L P K T 2 0 0 1 0 1 0 0 0 0 2 2 0 0 2 0 0 0 0 1 0 0 11 1 1178.7023 A0A024R534;O94776 A0A024R534 523 533 MTA2 Metastasis-associated protein MTA2 yes no 2 0.0018552 85.862 2 2 1.2106 1.2036 32.12 4 Median 0.77649 0.90813 2.6942 2 0 Median 1.8613 1.5827 1.5771 2 0 Median 157720000 80786000 76939000 121140000 67257000 53882000 36587000 13529000 23057000 2060 168 2119 5505;5506;5507;5508 8629;8630;8631;8632;8633;8634 8631 6 DLVEGFTDAEIR DKKPKRRGRPRSVRKDLVEGFTDAEIRRFI VRKDLVEGFTDAEIRRFIKAYKKFGLPLER K D L I R R 1 1 0 2 0 0 2 1 0 1 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1363.662 A0A024RC75;O14647;A0A1B0GTU9;A0A1B0GTM9 A0A024RC75 1126 1137 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0007062 76.943 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2061 354 2120 5509 8635 8635 1 DLVIVAANLQK GVSQELISAGLVDGRDLVIVAANLQKIVEE VDGRDLVIVAANLQKIVEEPQSNRSVTFKL R D L Q K I 2 0 1 1 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1182.6972 A0A024R2M7;O95747 A0A024R2M7 478 488 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 0.0022065 76.827 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6284500 0 6284500 6284500 0 6284500 0 0 0 2062 117 2121 5510 8636 8636 1 DLVLGPSGVLQGIR CDITFACVSDPKAAKDLVLGPSGVLQGIRP KDLVLGPSGVLQGIRPGKCYVDMSTVDADT K D L I R P 0 1 0 1 0 1 0 3 0 1 3 0 0 0 1 1 0 0 0 2 0 0 14 0 1422.8195 D3DUE6;K7EMM8;D3DUE7;Q49A26 D3DUE7 355 368 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2 4.8873E-05 93.258 2 2 1.4331 1.3435 16.983 4 Median 1.2022 1.2083 11.774 2 0 Median 1.7593 1.5196 14.19 2 0 Median 29024000 11478000 17546000 24258000 9880700 14377000 4766300 1597000 3169300 2063 1194;1193 2122 5511;5512;5513;5514 8637;8638;8639;8640;8641;8642;8643;8644;8645;8646 8640 10 DLVLGPSGVLQGIRPGK CDITFACVSDPKAAKDLVLGPSGVLQGIRP VLGPSGVLQGIRPGKCYVDMSTVDADTVTE K D L G K C 0 1 0 1 0 1 0 4 0 1 3 1 0 0 2 1 0 0 0 2 0 0 17 1 1704.9887 D3DUE6;K7EMM8;D3DUE7;Q49A26 D3DUE7 355 371 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2;3 4.565E-17 125.54 4 4 1.5265 1.5824 12.634 8 Median 1.2295 1.4345 6.12 4 0 Median 1.9902 1.6945 7.7655 4 0 Median 482870000 188650000 294220000 272490000 119610000 152880000 210380000 69039000 141340000 2064 1194;1193 2123 5515;5516;5517;5518;5519;5520;5521;5522 8647;8648;8649;8650;8651;8652;8653;8654;8655;8656;8657;8658;8659 8650 13 DLVLPTQALPASPALK GAQDSEAAFAKLDQKDLVLPTQALPASPAL LVLPTQALPASPALKNKRPRKDENESSAPA K D L L K N 3 0 0 1 0 1 0 0 0 0 4 1 0 0 3 1 1 0 0 1 0 0 16 0 1632.9451 Q15554;H3BR06;U3KQ35;J3KSZ6 Q15554 354 369 TERF2 Telomeric repeat-binding factor 2 yes no 2 0.0020459 61.435 2 2 1.333 1.3905 19.189 3 Plateau 1.333 1.4121 NaN 1 0 Median 1.277 1.0235 6.7629 2 0 Median 12740000 3865800 8873800 6850900 1555700 5295200 5888700 2310100 3578600 2065 1762 2124 5523;5524;5525;5526 8660;8661;8662;8663;8664;8665 8662 6 DLVWLEEIQEEAER CDQKLMEFLCNMDNKDLVWLEEIQEEAERM KDLVWLEEIQEEAERMFTREFSKEPELMPK K D L E R M 1 1 0 1 0 1 5 0 0 1 2 0 0 0 0 0 0 1 0 1 0 0 14 0 1757.8472 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 30 43 INCENP Inner centromere protein yes no 2 6.5232E-55 188.06 2 0.79248 0.90374 NaN 1 Median 0.79248 0.90374 NaN 1 0 Median NaN NaN NaN 0 0 Median 126430000 86921000 39506000 126430000 86921000 39506000 0 0 0 2066 2059 2125 5527;5528 8666;8667;8668 8666 3 DLWYLETEKPPPPAR RDGYRKAWNNQVCCKDLWYLETEKPPPPAR DLWYLETEKPPPPARVQLVRANTNSLEVSW K D L A R V 1 1 0 1 0 0 2 0 0 0 2 1 0 0 4 0 1 1 1 0 0 0 15 1 1810.9254 A6NEM2;P51610;Q05C05 A6NEM2 355 369 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.0052209 64.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2067 680 2126 5529 8669 8669 1 DLYANTVLSGGTTMYPGIADR TTFNSIMKCDVDIRKDLYANTVLSGGTTMY VLSGGTTMYPGIADRMQKEITALAPSTMKI K D L D R M 2 1 1 2 0 0 0 3 0 1 2 0 1 0 1 1 3 0 2 1 0 0 21 0 2214.0627 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;F1BXA6;A4UCT3;A5GZ75;Q9UE89;P63261;B4E3A4;B4DVQ0;V9HVZ7 P63261 292 312 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 9.2461E-59 171.46 4 6 2.3268 2.0743 23.154 10 Median 1.8899 2.1082 31.305 4 0 Median 2.5097 2.0743 19.165 6 0 Median 4168300000 1298800000 2869500000 3203600000 979870000 2223800000 964640000 318920000 645720000 2068 1624;1656;2186 2127;2128 5530;5531;5532;5533;5534;5535;5536;5537;5538;5539 8670;8671;8672;8673;8674;8675;8676;8677;8678;8679;8680;8681;8682;8683;8684;8685;8686;8687;8688;8689;8690;8691;8692;8693;8694;8695;8696;8697;8698 8695 1410 29 DLYEDELVPLFEK QPGIGTEVFVGKIPRDLYEDELVPLFEKAG PRDLYEDELVPLFEKAGPIWDLRLMMDPLS R D L E K A 0 0 0 2 0 0 3 0 0 0 3 1 0 1 1 0 0 0 1 1 0 0 13 0 1608.7923 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5;B4DT28 B2R7W4 175 187 HNRNPR;HNRPR;DKFZp686A13234 Heterogeneous nuclear ribonucleoprotein R yes no 2 1.6175E-30 171.92 2 1.3308 1.3384 1.6818 2 Median 1.3308 1.3384 1.6818 2 0 Median NaN NaN NaN 0 0 Median 55453000 24830000 30623000 55453000 24830000 30623000 0 0 0 2069 855 2129 5540;5541 8699;8700;8701;8702 8700 4 DLYEPTHGGK VGRDPAGMPHPETKKDLYEPTHGGKVLSMA PETKKDLYEPTHGGKVLSMAPGLTSVEIIP K D L G K V 0 0 0 1 0 0 1 2 1 0 1 1 0 0 1 0 1 0 1 0 0 0 10 0 1115.5247 Q5TB52;B4DWB5;O95340;Q9UIR2 Q5TB52 525 534 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 0.0086658 64.711 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23919000 0 23919000 23919000 0 23919000 0 0 0 2070 1044 2130 5542 8703 8703 1 DLYIRPNIAQK DSLVINLNRSNPKLKDLYIRPNIAQKRMQG PKLKDLYIRPNIAQKRMQGSLEAHVNGFRF K D L Q K R 1 1 1 1 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 0 11 1 1329.7405 Q9Y5B9 Q9Y5B9 664 674 SUPT16H FACT complex subunit SPT16 yes yes 2 1.4633E-11 138.66 2 2 0.75417 0.7688 1.2836 4 Median 0.64633 0.7688 1.0118 2 0 Median 0.88993 0.76738 1.971 2 0 Median 211720000 114260000 97459000 160360000 87966000 72393000 51363000 26297000 25066000 2071 2148 2131 5543;5544;5545;5546 8704;8705;8706;8707;8708;8709;8710 8707 7 DLYLIPLSAQDPVPSK RGRFGVVANNNRHVKDLYLIPLSAQDPVPS LYLIPLSAQDPVPSKLLPFEGPGLESPRPN K D L S K L 1 0 0 2 0 1 0 0 0 1 3 1 0 0 3 2 0 0 1 1 0 0 16 0 1754.9455 Q9BTC0 Q9BTC0 1158 1173 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00015117 62.924 2 2 1.2661 1.1418 35.218 4 Median 0.8096 0.8236 11.251 2 0 Median 1.8849 1.4984 3.4953 2 0 Median 56498000 24759000 31739000 29574000 15621000 13954000 26924000 9138400 17785000 2072 2002 2132 5547;5548;5549;5550 8711;8712;8713;8714;8715;8716 8713 6 DMAAPGTSSVPAPTAGNAEK DEQIESMFNSKKRVKDMAAPGTSSVPAPTA GTSSVPAPTAGNAEKLEIAKRLALRINAQK K D M E K L 5 0 1 1 0 0 1 2 0 0 0 1 1 0 3 2 2 0 0 1 0 0 20 0 1870.8731 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 829 848 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 7.182E-05 51.211 3 1.7581 1.755 NaN 1 Median 1.7581 1.755 NaN 1 0 Median NaN NaN NaN 0 0 Median 21951000 4245900 17705000 21951000 4245900 17705000 0 0 0 2073 511 2133 5551;5552;5553 8717;8718;8719 8718 356 3 DMEANLLPGFLR DQTVYIVLDKAEYLRDMEANLLPGFLRLQE YLRDMEANLLPGFLRLQELADRNVTVLFLS R D M L R L 1 1 1 1 0 0 1 1 0 0 3 0 1 1 1 0 0 0 0 0 0 0 12 0 1374.6966 Q9UDM8;A4D0P7;O43913;Q53FC8 Q9UDM8 132 143 ORC5L;ORC5 Origin recognition complex subunit 5 yes no 2 0.0017799 61.65 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8812200 0 8812200 8812200 0 8812200 0 0 0 2074 657 2134 5554;5555 8720;8721 8721 514 2 DMEDPTPVPNIEEVVLPK RRSQKEEDEQEDLTKDMEDPTPVPNIEEVV DPTPVPNIEEVVLPKNVNLKKDSENTPVKG K D M P K N 0 0 1 2 0 0 3 0 0 1 1 1 1 0 4 0 1 0 0 3 0 0 18 0 2021.0027 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 370 387 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 4.3904E-06 80.69 2 1.0064 1.0081 5.9019 2 Median 1.0064 1.0081 5.9019 2 0 Median NaN NaN NaN 0 0 Median 55461000 28528000 26933000 55461000 28528000 26933000 0 0 0 2075 1798 2135 5556;5557 8722;8723;8724;8725;8726 8723 1661 5 DMESDYSGQGVDQLQR PVYGFQWRHFGAEYRDMESDYSGQGVDQLQ MESDYSGQGVDQLQRVIDTIKTNPDDRRII R D M Q R V 0 1 0 3 0 3 1 2 0 0 1 0 1 0 0 2 0 0 1 1 0 0 16 0 1826.7741 Q53Y97;Q53FB7;A8K9A5;P04818 Q53Y97 148 163 TYMS Thymidylate synthase yes no 2 8.2145E-08 101.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2076 782 2136 5558 8727 8727 616 1 DMFQETMEAMR FLSNGHVTIPGQQDKDMFQETMEAMRIMGI QQDKDMFQETMEAMRIMGIPEEEQMGLLRV K D M M R I 1 1 0 1 0 1 2 0 0 0 0 0 3 1 0 0 1 0 0 0 0 0 11 0 1387.557 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 317 327 MYH9 Myosin-9 yes no 2 3.3555E-06 105.98 2 5.0509 5.1798 9.2839 2 Median 5.0509 5.1798 9.2839 2 0 Median NaN NaN NaN 0 0 Median 37928000 6030800 31897000 37928000 6030800 31897000 0 0 0 2077 81 2137 5559;5560 8728;8729;8730 8728 52;53;54 3 DMFSFEIPEHHVIVSASSDGFIK LVCLCEFKAHENRVKDMFSFEIPEHHVIVS EHHVIVSASSDGFIKMWKLKQDKKVPPSLL K D M I K M 1 0 0 2 0 0 2 1 2 3 0 1 1 3 1 4 0 0 0 2 0 0 23 0 2591.2366 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 250 272 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 3 1.1134E-08 60.278 1 2 0.87936 0.7102 NaN 1 Median NaN NaN NaN 0 0 Median 0.87936 0.7102 NaN 1 0 Median 23666000 7272500 16394000 6630000 0 6630000 17036000 7272500 9763600 2078 580 2138;2139 5561;5562;5563 8731;8732;8733;8734 8732 434 4 DMGGYSTTTDFIK DAVKKVIKVGKVRTRDMGGYSTTTDFIKSV TRDMGGYSTTTDFIKSVIGHLQTKGSNL__ R D M I K S 0 0 0 2 0 0 0 2 0 1 0 1 1 1 0 1 3 0 1 0 0 0 13 0 1434.6337 A0A087WZN1;O43837;A0A0D9SG66;Q9UIC5 A0A087WZN1 362 374 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.0070357 46.592 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5795300 0 5795300 5795300 0 5795300 0 0 0 2079 439 2140 5564 8735 8735 313 1 DMLEAGILDTYLGK KNVGLDIEAEVPAVKDMLEAGILDTYLGKY KDMLEAGILDTYLGKYWAIKLATNAAVTVL K D M G K Y 1 0 0 2 0 0 1 2 0 1 3 1 1 0 0 0 1 0 1 0 0 0 14 0 1537.7698 Q7Z759;Q53HU0;P50990;H7C2U0 Q7Z759 440 453 CCT8 T-complex protein 1 subunit theta yes no 2 2.9459E-09 107.85 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2080 1592 2141 5565 8736 8736 1372 1 DMLTQTYDLIER VISKTVPPVDIVFERDMLTQTYDLIERRGT FERDMLTQTYDLIERRGTKGISQAEIRVAM R D M E R R 0 1 0 2 0 1 1 0 0 1 2 0 1 0 0 0 2 0 1 0 0 0 12 0 1496.7181 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 367 378 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.011627 44.863 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3629000 3629000 0 3629000 3629000 0 0 0 0 2081 1699 2142 5566 8737 8737 1532 1 DMNQFGEGEQAK ITQVFHVPLEERKYKDMNQFGEGEQAKICL KYKDMNQFGEGEQAKICLEIMQRTGAHLEL K D M A K I 1 0 1 1 0 2 2 2 0 0 0 1 1 1 0 0 0 0 0 0 0 0 12 0 1352.5667 A0A024R4E5;Q00341;B2R5V9;B4DKR8;C9J5E5;C9JIZ1;C9JZI8;C9JHS7;C9JHZ8;C9JES8 A0A024R4E5 91 102 HDLBP Vigilin yes no 2 0.00010409 81.771 1 1.7426 1.8154 NaN 1 Median 1.7426 1.8154 NaN 1 0 Median NaN NaN NaN 0 0 Median 4017800 2165500 1852300 4017800 2165500 1852300 0 0 0 2082 154 2143 5567 8738 8738 129 1 DMPIQAFLLYQEPVLGPVR KVLPVPQKAVPYPQRDMPIQAFLLYQEPVL QAFLLYQEPVLGPVRGPFPIIV________ R D M V R G 1 1 0 1 0 2 1 1 0 1 3 0 1 1 3 0 0 0 1 2 0 0 19 0 2185.1605 CON__P02666 CON__P02666 184 202 yes yes 2 7.3895E-10 82.55 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44585000 44585000 0 44585000 44585000 0 0 0 0 + 2083 1152 2144 5568;5569 8739;8740 8740 860 2 DMSTWVFGAER IDWTDDSRCFVVGSKDMSTWVFGAERWDNL VGSKDMSTWVFGAERWDNLIYYALGGHKDA K D M E R W 1 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 1 1 0 1 0 0 11 0 1297.5761 Q15269;A0A0B4J2E5 Q15269 165 175 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.0001697 85.377 2 1 1.043 1.1391 19.779 3 Plateau 1.0291 1.0964 8.0004 2 0 Median 0.92091 0.78956 NaN 1 0 Median 70401000 35508000 34893000 67067000 33895000 33172000 3333500 1612800 1720700 2084 1756 2145 5570;5571;5572 8741;8742;8743;8744;8745;8746 8743 1623 6 DMVQDLLDFK KTFGTAIVINPEKDKDMVQDLLDFKDKVDH PEKDKDMVQDLLDFKDKVDHVIEVCFQKNE K D M F K D 0 0 0 3 0 1 0 0 0 0 2 1 1 1 0 0 0 0 0 1 0 0 10 0 1222.5904 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 360 369 CUL4A Cullin-4A yes no 2 0.00066136 73.985 3 0.88619 0.8919 0.65214 3 Median 0.88619 0.8919 0.65214 3 0 Median NaN NaN NaN 0 0 Median 28373000 14702000 13671000 28373000 14702000 13671000 0 0 0 2085 1718 2146 5573;5574;5575 8747;8748;8749 8747 1552 2 DMYNIIR LKKGWKWKDEDISQKDMYNIIRIHNQNNEQ KDEDISQKDMYNIIRIHNQNNEQAWKEILK K D M I R I 0 1 1 1 0 0 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 0 7 0 923.45349 A0A024RBY9;P53701;Q68D50 A0A024RBY9 146 152 HCCS;DKFZp779I1858 Cytochrome c-type heme lyase yes no 2 0.046161 50.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2086 350 2147 5576 8750 8750 258 1 DNAAVDGISLHLQDICPLLYSTDDAICSK LTGALIASLINCYIRDNAAVDGISLHLQDI ICPLLYSTDDAICSKANELLQRSRQVQNKT R D N S K A 3 0 1 5 2 1 0 1 1 3 4 1 0 0 1 3 1 0 1 1 0 0 29 0 3203.5115 B4DLT2;A0A024R071;O75694 B4DLT2 810 838 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.026892 14.977 2 1.1303 1.1527 9.1933 2 Median 1.1303 1.1527 9.1933 2 0 Median NaN NaN NaN 0 0 Median 10979000 3605200 7373600 10979000 3605200 7373600 0 0 0 2087 39 2148 5577;5578 8751;8752 8751 2 DNALLSAIEESRK PVKDTDIQGFLKNEKDNALLSAIEESRKRT EKDNALLSAIEESRKRTFGMAEEYHRESML K D N R K R 2 1 1 1 0 0 2 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 13 1 1444.7522 Q8N1F7;A8K897;H3BVG0;H3BV11;H3BRI8;H3BM93;H3BNN5 Q8N1F7 107 119 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00059616 62.924 2 1.5577 1.7219 21.743 2 Median 1.5577 1.7219 21.743 2 0 Median NaN NaN NaN 0 0 Median 22492000 9167800 13324000 22492000 9167800 13324000 0 0 0 2088 1904 2149 5579;5580 8753;8754 8754 2 DNEEVVLSENK KKNAQQLKRNPKRKKDNEEVVLSENKVRNT KRKKDNEEVVLSENKVRNTVKKNKNHLKDL K D N N K V 0 0 2 1 0 0 3 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1274.599 A0A024RD28;Q7L2Z9 A0A024RD28 24 34 C6orf139;CENPQ Centromere protein Q yes no 2 0.0346 58.63 1 0.8376 0.83062 NaN 1 Median 0.8376 0.83062 NaN 1 0 Median NaN NaN NaN 0 0 Median 8204400 4795700 3408700 8204400 4795700 3408700 0 0 0 2089 376 2150 5581 8755 8755 0 DNEQALYELVK DEKGVEAIPEGSHIKDNEQALYELVKCNFD SHIKDNEQALYELVKCNFDTEEALRRLRFN K D N V K C 1 0 1 1 0 1 2 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1320.6561 Q8N108 Q8N108 252 262 MIER1 Mesoderm induction early response protein 1 yes yes 2 0.0011188 85.622 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14044000 14044000 0 14044000 14044000 0 0 0 0 2090 1903 2151 5582;5583 8756;8757 8756 2 DNFGFIETANHDK NSNSKRLLGYVATLKDNFGFIETANHDKEI LKDNFGFIETANHDKEIFFHYSEFSGDVDS K D N D K E 1 0 2 2 0 0 1 1 1 1 0 1 0 2 0 0 1 0 0 0 0 0 13 0 1506.6739 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 497 509 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 1.7422E-23 153.54 2 2 2.2769 2.5274 23.188 3 Median 2.3143 2.5331 0.31771 2 0 Median 2.1516 1.6952 NaN 1 0 Median 93240000 27492000 65748000 83572000 25712000 57860000 9668100 1780100 7888000 2091 42 2152 5584;5585;5586;5587 8758;8759;8760;8761;8762;8763;8764;8765;8766 8763 9 DNFNVDEIFLK AQQITGMRFCEASAKDNFNVDEIFLKLVDD ASAKDNFNVDEIFLKLVDDILKKMPLDILR K D N L K L 0 0 2 2 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 11 0 1352.6612 Q6IQ22 Q6IQ22 189 199 RAB12 Ras-related protein Rab-12 yes yes 2 0.0005685 74.162 1 2.7459 2.7682 NaN 1 Median 2.7459 2.7682 NaN 1 0 Median NaN NaN NaN 0 0 Median 4879600 1704500 3175100 4879600 1704500 3175100 0 0 0 2092 1846 2153 5588 8767;8768 8767 2 DNGNLCDYDTQNILELK LQVTNEFQTVDLLIKDNGNLCDYDTQNILE GNLCDYDTQNILELKKYVTDRKSAEQNESK K D N L K K 0 0 3 3 1 1 1 1 0 1 3 1 0 0 0 0 1 0 1 0 0 0 17 0 2023.9157 Q562F6;B7Z7S9 Q562F6 871 887 SGOL2 Shugoshin-like 2 yes no 2 0.018775 40.278 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2229400 0 2229400 0 0 0 2229400 0 2229400 2093 1795 2154 5589 8769 8769 1 DNHFAIFIIPQGR YTLHVVDSPTVKPSRDNHFAIFIIPQGRET SRDNHFAIFIIPQGRETEWLFGMDEGRKQL R D N G R E 1 1 1 1 0 1 0 1 1 3 0 0 0 2 1 0 0 0 0 0 0 0 13 0 1526.7994 B3KNM8;B4E2X3;C4B4C6;Q8N6R0;B3KNI0 B3KNM8 211 223 feat;METTL13 Methyltransferase-like protein 13 yes no 3 0.0088605 43.03 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6371300 0 6371300 6371300 0 6371300 0 0 0 2094 915 2155 5590 8770 8770 1 DNHLLGTFDLTGIPPAPR TVTIKVYEGERPLTKDNHLLGTFDLTGIPP LLGTFDLTGIPPAPRGVPQIEVTFEIDVNG K D N P R G 1 1 1 2 0 0 0 2 1 1 3 0 0 1 3 0 2 0 0 0 0 0 18 0 1933.0058 V9HWB4;P11021 V9HWB4 475 492 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 3 7.1112E-06 70.783 2 1 0.80685 0.86623 23.894 3 Plateau 0.79161 0.83578 12.2 2 0 Median 0.65891 0.56817 NaN 1 0 Median 50202000 26078000 24124000 46803000 24080000 22723000 3398300 1997500 1400700 2095 1466 2156 5591;5592;5593 8771;8772;8773 8771 2 DNHNLIER SETEAKALLKERQKKDNHNLIERRRRFNIN LKERQKKDNHNLIERRRRFNINDRIKELGT K D N E R R 0 1 2 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 1009.4941 A0A0H3W5T2;B4DNC7;A8K5K3;O75030;B1AKB5;C9JBI8;A0A024RCY3;B4DPL3;B0QYS6;B0QYS7;P19484;Q75KY0;A0A1B0GXL9;B1AKB4;B7Z757;O14948;B4DIA5;A0A024QZ23;P19532 B4DIA5 244 251 MITF;TFEB;TFEC;TFE3 Microphthalmia-associated transcription factor;Transcription factor EB;Transcription factor EC;Transcription factor E3 no no 2 0.0015574 107.9 2 1 0.83814 0.90918 16.327 2 Median 0.83814 0.90918 16.327 2 0 Median NaN NaN NaN 0 0 Median 89919000 48221000 41697000 86448000 48221000 38226000 3471000 0 3471000 2096 9;536 2157 5594;5595;5596 8774;8775;8776 8775 3 DNIDITLQWLIQHSK QDREICCYSISCKEKDNIDITLQWLIQHSK DNIDITLQWLIQHSKSRRS___________ K D N S K S 0 0 1 2 0 2 0 0 1 3 2 1 0 0 0 1 1 1 0 0 0 0 15 0 1822.9577 B4DQT8;A0A024R2D4;B4E1J8;Q9NVJ2;B2R7U5;A0A024R977;Q96BM9 B4DQT8 159 173 ARL8B;ARL8A ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A yes no 2 1.9095E-05 89.301 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3201900 0 3201900 3201900 0 3201900 0 0 0 2097 109 2158 5597 8777 8777 1 DNIQGITK GLGKGGAKRHRKVLRDNIQGITKPAIRRLA RHRKVLRDNIQGITKPAIRRLARRGGVKRI R D N T K P 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 0 0 0 8 0 887.47125 B2R4R0;P62805;Q0VAS5 B2R4R0 25 32 HIST1H4H;HIST1H4A Histone H4 yes no 2 7.7054E-14 164.77 5 2 0.73008 0.72633 9.9866 6 Median 0.72507 0.75228 8.3674 4 0 Median 0.7766 0.66779 4.6767 2 0 Median 7628900000 6485800000 1143100000 7248300000 6271500000 976760000 380610000 214230000 166380000 2098 828 2159 5598;5599;5600;5601;5602;5603;5604 8778;8779;8780;8781;8782;8783;8784;8785;8786;8787;8788;8789;8790;8791 8786 14 DNIQGITKPAIR GLGKGGAKRHRKVLRDNIQGITKPAIRRLA VLRDNIQGITKPAIRRLARRGGVKRISGLI R D N I R R 1 1 1 1 0 1 0 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 12 1 1324.7463 B2R4R0;P62805;Q0VAS5 B2R4R0 25 36 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 8.0027E-22 153.11 4 3 0.80952 0.77813 8.7983 6 Median 0.76063 0.91452 9.5911 3 0 Plateau 0.87807 0.74512 3.7593 3 0 Median 1147400000 675520000 471860000 1014400000 604860000 409530000 132990000 70656000 62330000 2099 828 2160 5605;5606;5607;5608;5609;5610;5611 8792;8793;8794;8795;8796;8797;8798;8799;8800;8801;8802 8795 11 DNLAEDIMR VDQLTNDKARVEVERDNLAEDIMRLREKLQ RVEVERDNLAEDIMRLREKLQEEMLQREEA R D N M R L 1 1 1 2 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1075.4968 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8 V9HWE1 176 184 HEL113;VIM Vimentin yes no 2 0.00031409 96.311 6 1 1.4868 1.6961 NaN 1 Median 1.4868 1.6961 NaN 1 0 Median NaN NaN NaN 0 0 Median 291040000 85515000 205530000 288940000 85515000 203420000 2103700 0 2103700 2100 1457 2161 5612;5613;5614;5615;5616;5617;5618 8803;8804;8805;8806;8807;8808;8809;8810;8811 8803 1170 9 DNLEFFLAGIGR KPSCTIIPLMKKDHRDNLEFFLAGIGRLHL DHRDNLEFFLAGIGRLHLSGIDANPNALFP R D N G R L 1 1 1 1 0 0 1 2 0 1 2 0 0 2 0 0 0 0 0 0 0 0 12 0 1350.6932 A0A0U1RQF0;P49327 A0A0U1RQF0 791 802 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.5405E-12 127.76 2 1.3828 1.3905 6.9068 2 Median 1.3828 1.3905 6.9068 2 0 Median NaN NaN NaN 0 0 Median 30420000 12946000 17474000 30420000 12946000 17474000 0 0 0 2101 587 2162 5619;5620 8812;8813 8812 2 DNLPLQENVTIQK AINPELLQLLPLHPKDNLPLQENVTIQKQK PKDNLPLQENVTIQKQKRRSVNSKIPAPKE K D N Q K Q 0 0 2 1 0 2 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1510.7991 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;Q5JR91;Q5JR89 A8K3S3 78 90 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 2.7627E-19 148.19 2 2 1.1773 1.1076 1.4819 4 Median 0.99042 1.1129 1.1831 2 0 Median 1.3888 1.0975 1.7979 2 0 Median 273980000 132120000 141850000 246070000 119770000 126300000 27906000 12355000 15552000 2102 626 2163 5621;5622;5623;5624 8814;8815;8816;8817;8818;8819;8820;8821;8822 8817 9 DNNGVIGLLEPMKK ALTDDGRVFLWGSFRDNNGVIGLLEPMKKS RDNNGVIGLLEPMKKSMVPVQVQLDVPVVK R D N K K S 0 0 2 1 0 0 1 2 0 1 2 2 1 0 1 0 0 0 0 1 0 0 14 1 1526.8127 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 148 161 RCC1 Regulator of chromosome condensation yes no 2 0.0011821 60.301 2 0.86878 1.0163 27.827 2 Median 0.86878 1.0163 27.827 2 0 Median NaN NaN NaN 0 0 Median 47242000 23642000 23600000 47242000 23642000 23600000 0 0 0 2103 550 2164 5625;5626 8823;8824 8824 402 2 DNNLLGR GVLIQVYEGERAMTKDNNLLGRFELSGIPP EGERAMTKDNNLLGRFELSGIPPAPRGVPQ K D N G R F 0 1 2 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 800.41407 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNX1;B4E1T6;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5 A8K5I0 452 458 HEL-S-103;HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 no no 2 0.033026 79.146 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36234000 0 36234000 36234000 0 36234000 0 0 0 2104 533;845 2165 5627 8825 8825 1 DNPLDPVLAK VSFAQLKNLKWLDLKDNPLDPVLAKVAGDC WLDLKDNPLDPVLAKVAGDCLDEKQCKQCA K D N A K V 1 0 1 2 0 0 0 0 0 0 2 1 0 0 2 0 0 0 0 1 0 0 10 0 1080.5815 Q96AG4 Q96AG4 117 126 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.00097865 78.149 2 1 0.89982 1.007 34.337 3 Median 0.92453 1.0304 3.2559 2 0 Median 0.72532 0.56927 NaN 1 0 Median 160580000 87995000 72582000 143650000 78573000 65078000 16926000 9421500 7504600 2105 1958 2166 5628;5629;5630 8826;8827;8828;8829;8830;8831 8827 6 DNPNLLFNMCGFECR TTVQWENSFVSVYSKDNPNLLFNMCGFECR DNPNLLFNMCGFECRILPKCRTSYEEFTHK K D N C R I 0 1 3 1 2 0 1 1 0 0 2 0 1 2 1 0 0 0 0 0 0 0 15 0 1885.791 Q6P2Q9 Q6P2Q9 1181 1195 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0016621 42.095 1 1.2311 1.2237 NaN 1 Median 1.2311 1.2237 NaN 1 0 Median NaN NaN NaN 0 0 Median 8490200 3712100 4778100 8490200 3712100 4778100 0 0 0 2106 1854 2167 5631 8832 8832 1708 1 DNPNQYHYVA RIESLIDRDYMERDKDNPNQYHYVA_____ MERDKDNPNQYHYVA_______________ K D N V A - 1 0 2 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 2 1 0 0 10 0 1219.5258 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 750 759 CUL4A Cullin-4A yes no 2 0.039802 49.442 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26822000 0 0 26822000 0 0 0 0 0 2107 1718 2168 5632 8833 8833 1 DNPTAQQIMQLLR SVEPAQGEAREGSPRDNPTAQQIMQLLREM PRDNPTAQQIMQLLREMQNPRERPGLGSNP R D N L R E 1 1 1 1 0 3 0 0 0 1 2 0 1 0 1 0 1 0 0 0 0 0 13 0 1526.7875 Q08379;Q5HYE0;A0A087WYC0;Q5PXD5 Q08379 956 968 GOLGA2;DKFZp686K0319 Golgin subfamily A member 2 yes no 2 0.012629 44.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2108 1692 2169 5633 8834 8834 1522 1 DNQFLAR KHKREFKGAVREIRKDNQFLARMQLSEIME GAVREIRKDNQFLARMQLSEIMERDAERKR K D N A R M 1 1 1 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 862.42972 A8KA74;P78316 A8KA74 810 816 NOP14 Nucleolar protein 14 yes no 2 0.026655 75.269 1 1.0104 1.0342 NaN 1 Median 1.0104 1.0342 NaN 1 0 Median NaN NaN NaN 0 0 Median 26247000 13091000 13155000 26247000 13091000 13155000 0 0 0 2109 790 2170 5634 8835;8836 8836 2 DNQLSEVANK VVPSDLYPLVLGFLRDNQLSEVANKFAKAT LGFLRDNQLSEVANKFAKATGATQQDANAS R D N N K F 1 0 2 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1116.5411 B2RAU8;A0A0A0MRM9;Q14978;S4R349;S4R402;S4R341 B2RAU8 24 33 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 2.9159E-40 193.41 1 2 1.0625 1.1802 30.605 3 Plateau 1.0625 1.1802 NaN 1 0 Median 0.86782 0.69591 3.621 2 0 Median 61461000 31712000 29749000 49812000 25470000 24343000 11648000 6241800 5406500 2110 468 2171 5635;5636;5637 8837;8838;8839;8840 8837 4 DNQNFCVPCYEK HRCQQPIGTKSFIPKDNQNFCVPCYEKQHA IPKDNQNFCVPCYEKQHAMQCVQCKKPITT K D N E K Q 0 0 2 1 2 1 1 0 0 0 0 1 0 1 1 0 0 0 1 1 0 0 12 0 1572.6337 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q53T40;Q2TSB7 I0CE67 135 146 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 2 0.013633 53.569 2 1 1.0465 0.84349 NaN 1 Median NaN NaN NaN 0 0 Median 1.0465 0.84349 NaN 1 0 Median 10243000 1301700 8940800 7241700 0 7241700 3000800 1301700 1699100 2111 478 2172 5638;5639;5640 8841;8842;8843 8841 3 DNSCVQEIAEK FGIGKGKNLGVSFPKDNSCVQEIAEKQALA SFPKDNSCVQEIAEKQALAVGNKIVLHTEQ K D N E K Q 1 0 1 1 1 1 2 0 0 1 0 1 0 0 0 1 0 0 0 1 0 0 11 0 1291.5714 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1230 1240 CASC5 Protein CASC5 yes no 2 0.0030718 68.49 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3494800 3494800 0 3494800 3494800 0 0 0 0 2112 1928 2173 5641 8844 8844 1 DNSHPFVGLAFK DDSKEKTKILMNSSRDNSHPFVGLAFKLEV SSRDNSHPFVGLAFKLEVGRFGQLTYVRSY R D N F K L 1 0 1 1 0 0 0 1 1 0 1 1 0 2 1 1 0 0 0 1 0 0 12 0 1330.667 C9IZ01;E5KND7;E5KND5;Q96RP9;D3DNL3;F8WAU4;Q9H9M0 C9IZ01 348 359 GFM1 Elongation factor G, mitochondrial yes no 2 0.035364 44.309 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2113 1126 2174 5642 8845 8845 1 DNSILPPLDK IPEGVEQEIYFKVCRDNSILPPLDKEKGET FKVCRDNSILPPLDKEKGETLLSPLVMCGP R D N D K E 0 0 1 2 0 0 0 0 0 1 2 1 0 0 2 1 0 0 0 0 0 0 10 0 1110.5921 A0A087X0K9;Q6MZU1;G5E9E7;A9CQZ8;G3V1L9;Q07157;H0Y3R8;B4DZK4;Q68DX9 A0A087X0K9 1586 1595 TJP1;DKFZp686A1195;DKFZp686M05161 Tight junction protein ZO-1 yes no 2 0.0044399 72.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5288100 0 5288100 5288100 0 5288100 0 0 0 2114 444 2175 5643 8846 8846 1 DNTQLLINQLWQLPTER CAGPTPEAELQALARDNTQLLINQLWQLPT TQLLINQLWQLPTERVEEAIVARLPEPTTR R D N E R V 0 1 2 1 0 3 1 0 0 1 4 0 0 0 1 0 2 1 0 0 0 0 17 0 2081.0906 Q15050 Q15050 67 83 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 2.2497E-81 202.13 1 0.57049 0.65285 NaN 1 Median 0.57049 0.65285 NaN 1 0 Median NaN NaN NaN 0 0 Median 86430000 46429000 40001000 86430000 46429000 40001000 0 0 0 2115 1750 2176 5644 8847;8848 8847 2 DNTSVYHISGK VIPNSNFYVSRTACRDNTSVYHISGKKKTF TACRDNTSVYHISGKKKTFKDVGNLLRSHG R D N G K K 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 2 1 0 1 1 0 0 11 0 1219.5833 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 192 202 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.4158E-131 265.23 2 2 1.2063 1.2071 23.218 4 Median 0.85016 1.0047 0.62593 2 0 Median 1.7507 1.4971 5.1264 2 0 Median 1192100000 614150000 577970000 1025800000 554530000 471300000 166290000 59622000 106670000 2116 2070 2177 5645;5646;5647;5648 8849;8850;8851;8852;8853;8854;8855 8850 7 DNVSSPGGATIHALHVLESGGFR AKMLLHSEQHPGQLKDNVSSPGGATIHALH ATIHALHVLESGGFRSLLINAVEASCIRTR K D N F R S 2 1 1 1 0 0 1 4 2 1 2 0 0 1 1 3 1 0 0 2 0 0 23 0 2320.156 Q2TU78;E7D7X9;A0A024R8U9;P32322;Q8TBX0;J3QKT4;E2QRB3;B7Z8T1;J3KQ22 Q2TU78 109 131 PIG45;PYCR1 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 3 0.015568 19.755 1 0.25751 0.2217 NaN 1 Median NaN NaN NaN 0 0 Median 0.25751 0.2217 NaN 1 0 Median 7367000 6009300 1357700 0 0 0 7367000 6009300 1357700 2117 259 2178 5649 8856;8857 8857 2 DNWEDEPQEPQEPNK VYLKSQLNCLLLSGRDNWEDEPQEPQEPNK DNWEDEPQEPQEPNKVPLEDTETDELWASL R D N N K V 0 0 2 2 0 2 4 0 0 0 0 1 0 0 3 0 0 1 0 0 0 0 15 0 1853.7704 Q6RFH5;E9PS41 Q6RFH5 323 337 WDR74 WD repeat-containing protein 74 yes no 2 2.8603E-10 117.86 3 0.81929 0.83864 6.6605 2 Median 0.81929 0.83864 6.6605 2 0 Median NaN NaN NaN 0 0 Median 31914000 18011000 13904000 31914000 18011000 13904000 0 0 0 2118 1859 2179 5650;5651;5652 8858;8859;8860;8861 8860 4 DNYPQSVPR LQQKAVASEIFKGKKDNYPQSVPRLFISTR IFKGKKDNYPQSVPRLFISTRLGTDEISPR K D N P R L 0 1 1 1 0 1 0 0 0 0 0 0 0 0 2 1 0 0 1 1 0 0 9 0 1074.5094 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 862 870 MYO1C Unconventional myosin-Ic no no 2 0.001457 85.161 1 1.225 1.2613 NaN 1 Median 1.225 1.2613 NaN 1 0 Median NaN NaN NaN 0 0 Median 19703000 8697400 11006000 19703000 8697400 11006000 0 0 0 2119 1088;1189 2180 5653 8862 8862 1 DPAAGHTEESMTDDK PRESAQAIEDLAGFKDPAAGHTEESMTDDK DPAAGHTEESMTDDKTTKIPCKSSPELEDT K D P D K T 2 0 0 3 0 0 2 1 1 0 0 1 1 0 1 1 2 0 0 0 0 0 15 0 1602.6468 P46013 P46013 2805 2819 MKI67 Antigen KI-67 yes yes 2 0.025248 29.215 1 3.6497 2.9629 NaN 1 Median NaN NaN NaN 0 0 Median 3.6497 2.9629 NaN 1 0 Median 4431400 879970 3551400 0 0 0 4431400 879970 3551400 2120 1569 2181 5654 8863 8863 1 DPAEGDGAQPEETPR IWDKIKNLFSRQGSKDPAEGDGAQPEETPR DPAEGDGAQPEETPRDGDKA__________ K D P P R D 2 1 0 2 0 1 3 2 0 0 0 0 0 0 3 0 1 0 0 0 0 0 15 0 1567.675 E9PNH1;B4DIW2;F5H6X6;B4DSM6;A0A024R592;E9PKU7;B4DZ53;V9HWJ0;B4DJ30;Q14697 E9PNH1 100 114 GANAB;HEL-S-164nA Neutral alpha-glucosidase AB yes no 2 1.3279E-11 116.24 2 1.1829 1.1935 NaN 1 Median 1.1829 1.1935 NaN 1 0 Median NaN NaN NaN 0 0 Median 9426600 4865800 4560900 9426600 4865800 4560900 0 0 0 2121 175 2182 5655;5656 8864;8865;8866;8867 8864 4 DPALNSGVSQKPDPAK TTGAKKRAAPKGTKRDPALNSGVSQKPDPA PALNSGVSQKPDPAKTKNRRKRKPSTSDDS R D P A K T 2 0 1 2 0 1 0 1 0 0 1 2 0 0 3 2 0 0 0 1 0 0 16 1 1622.8264 P11388 P11388 1444 1459 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 8.4787E-56 182.33 2 4 1.4502 1.2478 21.512 6 Median 0.77088 0.88643 4.2305 2 0 Median 1.5609 1.341 8.1394 4 0 Median 54639000 26524000 28115000 31980000 17411000 14569000 22659000 9112700 13546000 2122 1471 2183 5657;5658;5659;5660;5661;5662 8868;8869;8870;8871;8872;8873;8874;8875;8876;8877;8878;8879 8870 12 DPANFQYPAESVLAYK FNPIISRKDITGKLKDPANFQYPAESVLAY PANFQYPAESVLAYKEGHLSPDIVAEQKKL K D P Y K E 3 0 1 1 0 1 1 0 0 0 1 1 0 1 2 1 0 0 2 1 0 0 16 0 1811.873 B4DLR8;Q3B792;H3BRK3;P15559;H3BNV2;Q53G81 B4DLR8 62 77 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2 5.0459E-47 163.99 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50161000 0 50161000 50161000 0 50161000 0 0 0 2123 1000 2184 5663;5664 8880;8881 8880 2 DPAQPMSPGEATQSGAR ______________________________ AQPMSPGEATQSGARPADRYGLLKHSREFL R D P A R P 3 1 0 1 0 2 1 2 0 0 0 0 1 0 3 2 1 0 0 0 0 0 17 0 1698.7631 Q9BQG0;B4DZZ1;B4DWP5 Q9BQG0 5 21 MYBBP1A Myb-binding protein 1A yes no 2 6.1234E-07 88.552 2 1.3456 1.3894 9.8581 2 Median 1.3456 1.3894 9.8581 2 0 Median NaN NaN NaN 0 0 Median 33021000 14008000 19014000 33021000 14008000 19014000 0 0 0 2124 1997 2185 5665;5666 8882;8883;8884;8885;8886 8886 1833 5 DPAQPMSPGEATQSGARPADR ______________________________ SPGEATQSGARPADRYGLLKHSREFLDFFW R D P D R Y 4 2 0 2 0 2 1 2 0 0 0 0 1 0 4 2 1 0 0 0 0 0 21 1 2137.9811 Q9BQG0;B4DZZ1;B4DWP5 Q9BQG0 5 25 MYBBP1A Myb-binding protein 1A yes no 3 6.3015E-05 52.814 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4714800 0 4714800 4714800 0 4714800 0 0 0 2125 1997 2186 5667 8887 8887 1833 1 DPEAFLVQIVSK KVIFSTLLGMKGTQRDPEAFLVQIVSKSQL TQRDPEAFLVQIVSKSQLPSENREGKVLWT R D P S K S 1 0 0 1 0 1 1 0 0 1 1 1 0 1 1 1 0 0 0 2 0 0 12 0 1344.7289 A0A024R932;Q8N0S6 A0A024R932 133 144 C1orf155;CENPL Centromere protein L yes no 2 1.5921E-12 127.42 2 0.9329 0.94339 21.939 2 Median 0.9329 0.94339 21.939 2 0 Median NaN NaN NaN 0 0 Median 14439000 7896200 6543100 14439000 7896200 6543100 0 0 0 2126 269 2187 5668;5669 8888;8889;8890;8891;8892;8893 8893 6 DPEDRIPSPLGYAAIPIK ______________________________ DRIPSPLGYAAIPIKFSEKQQASHYLYVRA R D P I K F 2 1 0 2 0 0 1 1 0 3 1 1 0 0 4 1 0 0 1 0 0 0 18 1 1951.0415 Q9Y3A4 Q9Y3A4 12 29 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 3 4.0927E-08 86.005 2 2 1.3115 1.2825 3.2912 4 Median 1.1035 1.2541 5.1625 2 0 Median 1.5021 1.2825 0.91202 2 0 Median 67366000 30268000 37098000 43679000 20862000 22816000 23687000 9405300 14282000 2127 2133 2188 5670;5671;5672;5673 8894;8895;8896;8897;8898;8899 8898 6 DPENFPFVVLGNK LDSWRDEFLIQASPRDPENFPFVVLGNKID PRDPENFPFVVLGNKIDLENRQVATKRAQA R D P N K I 0 0 2 1 0 0 1 1 0 0 1 1 0 2 2 0 0 0 0 2 0 0 13 0 1474.7456 A0A158RFU6;P51149;C9J592 A0A158RFU6 114 126 RAB7A Ras-related protein Rab-7a yes no 2 2.1849E-16 125.97 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2128 628 2189 5674 8900 8900 1 DPEPEDEVPDVK PLPIVVASPRGPLRKDPEPEDEVPDVKLDW LRKDPEPEDEVPDVKLDWEDVKTAQGMKRS K D P V K L 0 0 0 3 0 0 3 0 0 0 0 1 0 0 3 0 0 0 0 2 0 0 12 0 1367.6093 P82675 P82675 394 405 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 2 0.00034029 72.434 1 1.2212 1.235 NaN 1 Median 1.2212 1.235 NaN 1 0 Median NaN NaN NaN 0 0 Median 6854200 2983200 3870900 6854200 2983200 3870900 0 0 0 2129 1668 2190 5675 8901 8901 1 DPFAHLPK MDECEQALAAEPKAKDPFAHLPKSTFVLDE AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE K D P P K S 1 0 0 1 0 0 0 0 1 0 1 1 0 1 2 0 0 0 0 0 0 0 8 0 923.4865 Q53YD7;P26641;B4DUP0 Q53YD7 278 285 EEF1G Elongation factor 1-gamma yes no 2 0.010177 77.282 1 2 1.7773 1.4153 5.8544 2 Median NaN NaN NaN 0 0 Median 1.7773 1.4153 5.8544 2 0 Median 52742000 2868700 49873000 44402000 0 44402000 8340100 2868700 5471400 2130 1522 2191 5676;5677;5678 8902;8903;8904 8902 3 DPFSSSLQNR RCLHPLLVVVSCLTRDPFSSSLQNRAEVDK SCLTRDPFSSSLQNRAEVDKVKALLSHDSG R D P N R A 0 1 1 1 0 1 0 0 0 0 1 0 0 1 1 3 0 0 0 0 0 0 10 0 1149.5415 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 881 890 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 4.5146E-08 108.74 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2131 122 2192 5679 8905 8905 1 DPGGGAGAITVASHSK TKVAELLEKYKGPARDPGGGAGAITVASHS PGGGAGAITVASHSKAVVSQAWREEVAAPG R D P S K A 3 0 0 1 0 0 0 4 1 1 0 1 0 0 1 2 1 0 0 1 0 0 16 0 1423.7056 J3KPS2;Q6ZRV2 J3KPS2 474 489 FAM83H Protein FAM83H yes no 2 4.431E-10 112.44 2 0.73835 0.74064 NaN 1 Median 0.73835 0.74064 NaN 1 0 Median NaN NaN NaN 0 0 Median 9869800 5121400 4748500 9869800 5121400 4748500 0 0 0 2132 1327 2193 5680;5681 8906;8907;8908 8907 3 DPGGITAGSTDEPPMLTK GVPEEAQPPRLGQERDPGGITAGSTDEPPM GITAGSTDEPPMLTKEEPVPELLEAETMEM R D P T K E 1 0 0 2 0 0 1 3 0 1 1 1 1 0 3 1 3 0 0 0 0 0 18 0 1785.8455 I3L1Q2;Q8WUZ0 I3L1Q2 148 165 BCL7C B-cell CLL/lymphoma 7 protein family member C yes no 2 0.0003915 48.659 2 1.0527 1.1023 NaN 1 Median 1.0527 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median 3934200 1865600 2068600 3934200 1865600 2068600 0 0 0 2133 1319 2194 5682;5683 8909;8910 8909 999 2 DPGVPNSAPFK LRKEAKKRGHKKPRKDPGVPNSAPFKEALL KPRKDPGVPNSAPFKEALLREAELRKQRLE K D P F K E 1 0 1 1 0 0 0 1 0 0 0 1 0 1 3 1 0 0 0 1 0 0 11 0 1127.5611 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5;C9JYH9 A0A024R2Z6 35 45 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.00040918 80.755 2 1 0.80981 0.90799 3.1032 3 Median 0.80181 0.88514 3.8637 2 0 Median 1.1647 0.90799 NaN 1 0 Median 165920000 91129000 74788000 162430000 89441000 72992000 3483900 1688500 1795400 2134 125 2195 5684;5685;5686 8911;8912;8913 8911 3 DPIDVNYEK VAYSLLRGGSDDSSKDPIDVNYEKLKTDIK SDDSSKDPIDVNYEKLKTDIKVVDRDSEEA K D P E K L 0 0 1 2 0 0 1 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 9 0 1091.5135 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 788 796 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.3829E-11 152.34 2 2 0.86871 0.83117 8.6916 4 Median 0.67796 0.79573 9.0253 2 0 Median 1.0902 0.86567 8.6143 2 0 Median 645190000 378710000 266480000 617320000 365570000 251750000 27869000 13141000 14728000 2135 139 2196 5687;5688;5689;5690 8914;8915;8916;8917;8918;8919;8920 8917 7 DPIPYLPPLEK TQFLPPNLLALFAPRDPIPYLPPLEKLPHE FAPRDPIPYLPPLEKLPHEKHHNQPYCGIA R D P E K L 0 0 0 1 0 0 1 0 0 1 2 1 0 0 4 0 0 0 1 0 0 0 11 0 1280.7016 A8KAQ5;A0A024QZD5;P08621 A8KAQ5 17 27 SNRP70;SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 0.0015603 72.607 2 2 1.0454 0.96318 26.53 4 Median 1.1704 1.2263 3.9077 2 0 Median 0.9704 0.77585 0.33246 2 0 Median 86046000 42863000 43183000 77239000 38577000 38662000 8806800 4286500 4520400 2136 17 2197 5691;5692;5693;5694 8921;8922;8923;8924;8925;8926 8921 6 DPIVMGVTVEAGQVK PCKIKILPQYIFNSRDPIVMGVTVEAGQVK DPIVMGVTVEAGQVKQGTPMCVPSKNFVDI R D P V K Q 1 0 0 1 0 1 1 2 0 1 0 1 1 0 1 0 1 0 0 4 0 0 15 0 1541.8123 Q8N5A0;A0A087WUT6;O60841;B3KM86;D3DVI5 Q8N5A0 1106 1120 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.00010888 71.076 2 1.9772 2.0411 9.4874 2 Median 1.9772 2.0411 9.4874 2 0 Median NaN NaN NaN 0 0 Median 62848000 23835000 39013000 62848000 23835000 39013000 0 0 0 2137 414 2198 5695;5696 8927;8928 8928 299 2 DPIVNVWYSVNGER IKYNREGDLLFTVAKDPIVNVWYSVNGERL KDPIVNVWYSVNGERLGTYMGHTGAVWCVD K D P E R L 0 1 2 1 0 0 1 1 0 1 0 0 0 0 1 1 0 1 1 3 0 0 14 0 1646.8053 Q5U0F4;Q53HU7;Q13347;Q5TFK1 Q5U0F4 31 44 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 2 0.00022318 84.289 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8623900 0 8623900 8623900 0 8623900 0 0 0 2138 1711 2199 5697;5698;5699 8929;8930;8931 8929 3 DPLLASGTDGVGTK GGFAGLFDLKAAGFKDPLLASGTDGVGTKL KDPLLASGTDGVGTKLKIAQLCNKHDTIGQ K D P T K L 1 0 0 2 0 0 0 3 0 0 2 1 0 0 1 1 2 0 0 1 0 0 14 0 1329.6776 Q3B7A7;Q59HH3;P22102;B4DJ93;O14660;Q71VH3 Q3B7A7 486 499 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 7.6916E-10 122.51 2 2.8152 2.9662 4.1849 2 Median 2.8152 2.9662 4.1849 2 0 Median NaN NaN NaN 0 0 Median 32497000 9558900 22938000 32497000 9558900 22938000 0 0 0 2139 1507 2200 5700;5701 8932;8933;8934;8935 8934 4 DPLLLAIIPK QMTWGALFRHEILSRDPLLLAIIPKYLRAS EILSRDPLLLAIIPKYLRASMTNLVKMGFP R D P P K Y 1 0 0 1 0 0 0 0 0 2 3 1 0 0 2 0 0 0 0 0 0 0 10 0 1091.6954 A8K5Y7;Q9HAV4;B3KPQ5;H0Y9I3 A8K5Y7 387 396 XPO5 Exportin-5 yes no 2 1.842E-12 124.98 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2140 754 2201 5702;5703;5704 8936;8937;8938 8938 3 DPLPPLDPQAIKPILK DIRLVAEKMIWWANKDPLPPLDPQAIKPIL PLPPLDPQAIKPILKALLDNTKDKNTVVRA K D P L K A 1 0 0 2 0 1 0 0 0 2 3 2 0 0 5 0 0 0 0 0 0 0 16 1 1754.0342 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2580 2595 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 7.1867E-05 73.022 2 1 1.9686 2.2789 NaN 1 Median 1.9686 2.2789 NaN 1 0 Median NaN NaN NaN 0 0 Median 11578000 4935600 6642800 10345000 3702400 6642800 1233200 1233200 0 2141 1205 2202 5705;5706;5707 8939;8940;8941;8942 8939 4 DPNAFLFDHLLTLK QARVDAHRCIVRALKDPNAFLFDHLLTLKP KDPNAFLFDHLLTLKPVKFLEGELIHDLLT K D P L K P 1 0 1 2 0 0 0 0 1 0 4 1 0 2 1 0 1 0 0 0 0 0 14 0 1642.8719 Q7L2H7;J3KNJ2;H0YCQ8 Q7L2H7 214 227 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 2 3.2081E-21 145 2 1.8811 1.869 NaN 1 Median 1.8811 1.869 NaN 1 0 Median NaN NaN NaN 0 0 Median 8093500 3060100 5033400 8093500 3060100 5033400 0 0 0 2142 1872 2203 5708;5709 8943;8944;8945 8943 3 DPNAFLFDHLLTLKPVK QARVDAHRCIVRALKDPNAFLFDHLLTLKP NAFLFDHLLTLKPVKFLEGELIHDLLTIFV K D P V K F 1 0 1 2 0 0 0 0 1 0 4 2 0 2 2 0 1 0 0 1 0 0 17 1 1967.088 Q7L2H7;J3KNJ2;H0YCQ8 Q7L2H7 214 230 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 3 0.0081564 26.837 1 1.5985 1.4203 NaN 1 Median NaN NaN NaN 0 0 Median 1.5985 1.4203 NaN 1 0 Median 1448600 574400 874210 0 0 0 1448600 574400 874210 2143 1872 2204 5710 8946 8946 1 DPNGPTHSSTLFVR ______________________________ KDPNGPTHSSTLFVRDDGSSMSFYVRPSPA K D P V R D 0 1 1 1 0 0 0 1 1 0 1 0 0 1 2 2 2 0 0 1 0 0 14 0 1526.7478 Q9NYB0 Q9NYB0 10 23 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 2;3 0.016875 45.915 2 1.3391 1.4029 NaN 1 Median 1.3391 1.4029 NaN 1 0 Median NaN NaN NaN 0 0 Median 10924000 6458000 4465800 10924000 6458000 4465800 0 0 0 2144 2082 2205 5711;5712 8947;8948 8947 1 DPNLLLSVSK VGHGNAINELKFHPRDPNLLLSVSKDHALR KFHPRDPNLLLSVSKDHALRLWNIQTDTLV R D P S K D 0 0 1 1 0 0 0 0 0 0 3 1 0 0 1 2 0 0 0 1 0 0 10 0 1084.6128 O75530;B4DVW7;E9PJK2 O75530 202 211 EED Polycomb protein EED yes no 2 0.00054734 90.827 2 1.0272 1.042 NaN 1 Median 1.0272 1.042 NaN 1 0 Median NaN NaN NaN 0 0 Median 36815000 12889000 23925000 36815000 12889000 23925000 0 0 0 2145 1407 2206 5713;5714 8949;8950 8949 2 DPNTYFIVGTAMVYPEEAEPK QNEYALSLVSCKLGKDPNTYFIVGTAMVYP IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ K D P P K Q 2 0 1 1 0 0 3 1 0 1 0 1 1 1 3 0 2 0 2 2 0 0 21 0 2370.109 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;F5H198 Q16531 824 844 DDB1 DNA damage-binding protein 1 yes no 2 1.5072E-15 100.43 2 2 0.89435 0.81631 31.505 4 Median 1.0222 1.0744 1.0234 2 0 Median 0.7835 0.6226 0.4885 2 0 Median 98644000 47683000 50960000 69715000 31846000 37869000 28929000 15838000 13091000 2146 1770 2207 5715;5716;5717;5718 8951;8952;8953;8954;8955;8956;8957 8952 1633 7 DPPDPYVSLLLLPDK VSIVHGCRSLRQNGRDPPDPYVSLLLLPDK DPPDPYVSLLLLPDKNRGTKRRTSQKKRTL R D P D K N 0 0 0 3 0 0 0 0 0 0 4 1 0 0 4 1 0 0 1 1 0 0 15 0 1680.8974 B3KY56;B3KMV5;A0A024RB17;A0A024RB16;Q9BSJ8 B3KY56 958 972 FAM62A;ESYT1 Extended synaptotagmin-1 yes no 2 0.00093495 76.522 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4570100 0 4570100 4570100 0 4570100 0 0 0 2147 320 2208 5719;5720 8958;8959 8958 2 DPPSEANSIQSANATTK KNTNKKTKPKSDILKDPPSEANSIQSANAT PSEANSIQSANATTKTSETNHTSRPRLKNV K D P T K T 3 0 2 1 0 1 1 0 0 1 0 1 0 0 2 3 2 0 0 0 0 0 17 0 1729.8119 Q8N488 Q8N488 120 136 RYBP RING1 and YY1-binding protein yes yes 2 0.00048025 63.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2148 1907 2209 5721 8960 8960 1 DPQFAEDYIFK LRDLTQNTVVSINFKDPQFAEDYIFKAVML INFKDPQFAEDYIFKAVMLPGARKPAAVLK K D P F K A 1 0 0 2 0 1 1 0 0 1 0 1 0 2 1 0 0 0 1 0 0 0 11 0 1371.6347 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 681 691 XRN2 5-3 exoribonuclease 2 yes no 2 0.0045664 57.785 2 1.0261 1.0501 2.8965 2 Median 1.0261 1.0501 2.8965 2 0 Median NaN NaN NaN 0 0 Median 19868000 10893000 8975100 19868000 10893000 8975100 0 0 0 2149 903 2210 5722;5723 8961;8962 8962 2 DPQGPGPGLEAFVSAAK RKEELTGVRFKAQLKDPQGPGPGLEAFVSA QGPGPGLEAFVSAAKKLPREDVYDVVEGYI K D P A K K 3 0 0 1 0 1 1 3 0 0 1 1 0 1 3 1 0 0 0 1 0 0 17 0 1639.8206 O60287 O60287 41 57 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00015475 53.3 2 1 1.4942 1.5268 26.466 3 Plateau 1.4942 1.5268 19.712 2 0 Median 1.3009 1.0341 NaN 1 0 Median 43150000 18780000 24370000 36560000 16186000 20374000 6589600 2593200 3996500 2150 1392 2211 5724;5725;5726 8963;8964;8965;8966 8963 4 DPQTPVLQTK INLLPSKSSVTKICRDPQTPVLQTKHRARA TKICRDPQTPVLQTKHRARAVTCKSTAELE R D P T K H 0 0 0 1 0 2 0 0 0 0 1 1 0 0 2 0 2 0 0 1 0 0 10 0 1125.603 Q643R0;Q9ULW0;B3KM90 Q643R0 366 375 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.0045944 64.654 2 1 1.3098 1.0239 NaN 1 Median NaN NaN NaN 0 0 Median 1.3098 1.0239 NaN 1 0 Median 2094800 831830 1263000 0 0 0 2094800 831830 1263000 2151 1837 2212 5727;5728;5729 8967;8968;8969 8968 3 DPSFRPTAK FTKSFKEFIDACLNKDPSFRPTAKELLKHK DACLNKDPSFRPTAKELLKHKFIVKNSKKT K D P A K E 1 1 0 1 0 0 0 0 0 0 0 1 0 1 2 1 1 0 0 0 0 0 9 1 1017.5243 Q8NBY1;B4E0Y9;Q9P289;Q9NWX4;Q499L9;Q96SR7 Q8NBY1 258 266 STK26;MST4 Serine/threonine-protein kinase 26 yes no 2 0.0001362 113.71 2 1.4648 1.6697 21.697 2 Median 1.4648 1.6697 21.697 2 0 Median NaN NaN NaN 0 0 Median 58053000 21850000 36203000 58053000 21850000 36203000 0 0 0 2152 1065 2213 5730;5731 8970;8971;8972;8973 8972 4 DPSGLFYILPFQK ARLKTFTANQIDEIKDPSGLFYILPFQKGY IKDPSGLFYILPFQKGYLVNWDVQRQVWDY K D P Q K G 0 0 0 1 0 1 0 1 0 1 2 1 0 2 2 1 0 0 1 0 0 0 13 0 1523.8024 F8VP72;F8W043;F8W0Q1;Q9P0A0;F8VRL1;F8W057;Q9GZN1 F8VP72 50 62 ACTR6 Actin-related protein 6 yes no 2 0.00034992 63.216 1 0.50965 0.54674 NaN 1 Median 0.50965 0.54674 NaN 1 0 Median NaN NaN NaN 0 0 Median 3815500 2642800 1172700 3815500 2642800 1172700 0 0 0 2153 1258 2214 5732 8974 8974 1 DPSLPAASSSSSSSK GSKSASRTHRGSHRKDPSLPAASSSSSSSK DPSLPAASSSSSSSKRGKKMCSDGEKAEKR K D P S K R 2 0 0 1 0 0 0 0 0 0 1 1 0 0 2 8 0 0 0 0 0 0 15 0 1406.6525 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPK7;D2CPK0;D2CPJ1;D2CPJ3 A0A024R2M8 494 508 XPC DNA repair protein complementing XP-C cells yes no 2 0.021318 33.761 1 1.057 0.88089 NaN 1 Median NaN NaN NaN 0 0 Median 1.057 0.88089 NaN 1 0 Median 2247800 1113900 1133900 0 0 0 2247800 1113900 1133900 2154 118 2215 5733 8975;8976 8976 2 DPSLPVASSSSSSSK GSKSASRTHRGSHRKDPSLPVASSSSSSSK DPSLPVASSSSSSSKRGKKMCSDGEKAEKR K D P S K R 1 0 0 1 0 0 0 0 0 0 1 1 0 0 2 8 0 0 0 1 0 0 15 0 1434.6838 D2CPI8 D2CPI8 164 178 yes yes 2 1.1373E-05 91.961 2 2 0.81676 0.86946 34.511 3 Median 0.6277 0.65086 40.954 2 0 Median 1.1325 0.90094 NaN 1 0 Median 70402000 32452000 37951000 60340000 28922000 31418000 10063000 3530200 6532300 2155 1184 2216 5734;5735;5736;5737 8977;8978;8979;8980;8981;8982 8977 6 DPSLSDSSTVGLQR FSINSVASTYSEFAKDPSLSDSSTVGLQRE KDPSLSDSSTVGLQRELSKASKSDATSGIL K D P Q R E 0 1 0 2 0 1 0 1 0 0 2 0 0 0 1 4 1 0 0 1 0 0 14 0 1460.7107 A0A024RC67;O43663 A0A024RC67 585 598 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.021038 44.612 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5668200 5668200 0 5668200 5668200 0 0 0 0 2156 353 2217 5738 8983 8983 1 DPSSDLHLLLDQSK EESVLLYCHSSEGNKDPSSDLHLLLDQSKF KDPSSDLHLLLDQSKFSSLKRTMSIKESSS K D P S K F 0 0 0 3 0 1 0 0 1 0 4 1 0 0 1 3 0 0 0 0 0 0 14 0 1566.789 Q4KMR5;E9PH99;Q9Y4E5 Q4KMR5 410 423 ZNF451 Zinc finger protein 451 yes no 2 0.033972 30.004 1 1.0683 1.0711 NaN 1 Median 1.0683 1.0711 NaN 1 0 Median NaN NaN NaN 0 0 Median 13824000 6784500 7039200 13824000 6784500 7039200 0 0 0 2157 1236 2218 5739 8984 8984 1 DPTEHIPEIILNNFTTR MSSVRLRKEIKRRGKDPTEHIPEIILNNFT TEHIPEIILNNFTTRLGHSIGRMFASLFPH K D P T R L 0 1 2 1 0 0 2 0 1 3 1 0 0 1 2 0 3 0 0 0 0 0 17 0 2009.0218 Q9H9Y2 Q9H9Y2 238 254 RPF1 Ribosome production factor 1 yes yes 3 1.8832E-05 67.646 2 2 0.9287 0.86144 18.987 4 Median 0.9794 1.0323 16.042 2 0 Median 0.92719 0.77791 4.8818 2 0 Median 70792000 36037000 34755000 60313000 30133000 30180000 10480000 5904400 4575200 2158 2048 2219 5740;5741;5742;5743 8985;8986;8987;8988;8989;8990;8991;8992;8993;8994 8991 10 DPTNDLTFYVSQK SKALETLNSCKKLGRDPTNDLTFYVSQKRN GRDPTNDLTFYVSQKRNNVYFSQSAANLDN R D P Q K R 0 0 1 2 0 1 0 0 0 0 1 1 0 1 1 1 2 0 1 1 0 0 13 0 1526.7253 Q96QE3 Q96QE3 1740 1752 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 2 0.011136 52.555 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2084900 0 2084900 0 0 0 2084900 0 2084900 2159 1984 2220 5744 8995 8995 1 DPTPSFYDLWAQEDPNAVLGR VHAIKMGWIQPRRPRDPTPSFYDLWAQEDP YDLWAQEDPNAVLGRHKMHVPAPKLALPGH R D P G R H 2 1 1 3 0 1 1 1 0 0 2 0 0 1 3 1 1 1 1 1 0 0 21 0 2390.1179 Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 275 295 BOP1 Ribosome biogenesis protein BOP1 yes no 2 1.1863E-18 103.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10983000 10983000 0 10983000 10983000 0 0 0 0 2160 1726 2221 5745 8996;8997 8997 2 DPVQEAWAEDVDLR RQAHLYRGIFPVLCKDPVQEAWAEDVDLRV KDPVQEAWAEDVDLRVNFAMNVGKARGFFK K D P L R V 2 1 0 3 0 1 2 0 0 0 1 0 0 0 1 0 0 1 0 2 0 0 14 0 1641.7635 V9HWB8;P14618;A0A024R5Z9;B4DNK4;B4DRT3;Q8WUW7;Q504U3;H3BR70 V9HWB8 476 489 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 0.00014952 94.122 1 1.9592 1.6841 NaN 1 Median NaN NaN NaN 0 0 Median 1.9592 1.6841 NaN 1 0 Median 6607100 2278200 4328800 0 0 0 6607100 2278200 4328800 2161 1481 2222 5746 8998 8998 1 DPVTIDCGHVFCR LEEEVTCSICLDYLRDPVTIDCGHVFCRSC LRDPVTIDCGHVFCRSCTTDVRPISGSRPV R D P C R S 0 1 0 2 2 0 0 1 1 1 0 0 0 1 1 0 1 0 0 2 0 0 13 0 1574.697 A0A024RCP3;Q12899;A2AE48;A0A0G2JIW2;A2AE50;Q5SPU2 A0A024RCP3 25 37 TRIM26 Tripartite motif-containing protein 26 yes no 2 1.5027E-05 94.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3383000 3383000 0 3383000 3383000 0 0 0 0 2162 365 2223 5747 8999 8999 1 DPVTTGTPQPPQR FRKEAGDFYYMAGNKDPVTTGTPQPPQRRP NKDPVTTGTPQPPQRRPSGPVQSYGPPQGS K D P Q R R 0 1 0 1 0 2 0 1 0 0 0 0 0 0 4 0 3 0 0 1 0 0 13 0 1392.6997 W5ZR30;Q9UGU0;I3L1M7 W5ZR30 97 109 TCF20 Transcription factor 20 yes no 2 1.0167E-05 98.249 2 1 1.4139 1.2317 NaN 1 Median NaN NaN NaN 0 0 Median 1.4139 1.2317 NaN 1 0 Median 6594900 3122500 3472500 5094700 2575600 2519100 1500200 546820 953370 2163 2100 2224 5748;5749;5750 9000;9001;9002 9001 3 DPYCHPVCANR YADPTKRLELYFRPKDPYCHPVCANRFSTS FRPKDPYCHPVCANRFSTSSLLLRIRKRTR K D P N R F 1 1 1 1 2 0 0 0 1 0 0 0 0 0 2 0 0 0 1 1 0 0 11 0 1387.5761 Q9Y5Q8;Q5T7U1;Q5T7U4 Q9Y5Q8 68 78 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.03872 47.603 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1984500 0 1984500 1984500 0 1984500 0 0 0 2164 2149 2225 5751 9003 9003 1 DPYSGSTISLFQAMQK HEQLLSAEKAVTGYRDPYSGSTISLFQAMQ PYSGSTISLFQAMQKGLVLRQHGIRLLEAQ R D P Q K G 1 0 0 1 0 2 0 1 0 1 1 1 1 1 1 3 1 0 1 0 0 0 16 0 1771.8451 Q15149;D3DWL0 Q15149 3575 3590 PLEC;PLEC1 Plectin yes no 2 5.8377E-05 72.34 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6003600 0 6003600 6003600 0 6003600 0 0 0 2165 1754 2226 5752 9004;9005 9005 1609 2 DPYTEQTISLFQAMK HDRLLSAERAVTGYRDPYTEQTISLFQAMK DPYTEQTISLFQAMKKELIPTEEALRLLDA R D P M K K 1 0 0 1 0 2 1 0 0 1 1 1 1 1 1 1 2 0 1 0 0 0 15 0 1770.8498 Q15149;D3DWL0;Q96IE3 Q15149 3910 3924 PLEC;PLEC1 Plectin yes no 2 0.00019441 58.274 2 2.2256 2.2742 4.7809 2 Median 2.2256 2.2742 4.7809 2 0 Median NaN NaN NaN 0 0 Median 21853000 8162800 13690000 21853000 8162800 13690000 0 0 0 2166 1754 2227 5753;5754 9006;9007 9007 1610 2 DQAEEEPNRIPSR KEEDVVTPKPGKRKRDQAEEEPNRIPSRSL KRDQAEEEPNRIPSRSLRRTKLNQESTAPK R D Q S R S 1 2 1 1 0 1 3 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 13 1 1539.7277 Q14676;B4DYH4 Q14676 1867 1879 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 4.1044E-05 103.08 2 0.59775 0.66146 2.1307 2 Median 0.59775 0.66146 2.1307 2 0 Median NaN NaN NaN 0 0 Median 29908000 17133000 12775000 29908000 17133000 12775000 0 0 0 2167 1738 2228 5755;5756 9008;9009 9009 2 DQAVMISGESGAGK AVADTVYRALRTERRDQAVMISGESGAGKT RDQAVMISGESGAGKTEATKRLLQFYAETC R D Q G K T 2 0 0 1 0 1 1 3 0 1 0 1 1 0 0 2 0 0 0 1 0 0 14 0 1348.6293 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6;I3L168;I3L3F5 F5H6E2 109 122 MYO1C Unconventional myosin-Ic yes no 2 0.00084332 69.03 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2168 1088 2229 5757;5758;5759 9010;9011;9012 9011 832 3 DQAWDDVVR ETTLQLEDIIKQRIRDQAWDDVVRKEKPKE IKQRIRDQAWDDVVRKEKPKEDAYEYKKRL R D Q V R K 1 1 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 9 0 1102.5043 B3KPV5;O00566 B3KPV5 435 443 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 0.052695 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4947000 4947000 0 4947000 4947000 0 0 0 0 2169 924 2230 5760 9013 9013 1 DQDAIETDAMIK YNEELNEDDSQSDEKDQDAIETDAMIKKKT DEKDQDAIETDAMIKKKTKSSKPSKPEKDK K D Q I K K 2 0 0 3 0 1 1 0 0 2 0 1 1 0 0 0 1 0 0 0 0 0 12 0 1348.618 P35251;H0Y9P8 P35251 1110 1121 RFC1 Replication factor C subunit 1 yes no 2 6.9771E-11 110.53 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9558700 9558700 0 9558700 9558700 0 0 0 0 2170 1542 2231 5761;5762;5763 9014;9015;9016 9015 1299 3 DQDLEPGAPSMGAK GEIDCEDWIKKTTARDQDLEPGAPSMGAKS RDQDLEPGAPSMGAKSLCIPFKPLCELQPG R D Q A K S 2 0 0 2 0 1 1 2 0 0 1 1 1 0 2 1 0 0 0 0 0 0 14 0 1414.6398 P07814;B4DP50 P07814 1464 1477 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 8.2199E-05 73.655 2 3.5258 3.5417 NaN 1 Median 3.5258 3.5417 NaN 1 0 Median NaN NaN NaN 0 0 Median 16696000 2610700 14086000 16696000 2610700 14086000 0 0 0 2171 1454 2232 5764;5765 9017;9018 9018 1158 2 DQDLITIIGK DSTGARVIFPAAEDKDQDLITIIGKEDAVR AAEDKDQDLITIIGKEDAVREAQKELEALI K D Q G K E 0 0 0 2 0 1 0 1 0 3 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1114.6234 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H0Y394;Q6ZS03;Q96CF6;Q6ZN49;H7C2D1;Q2HJC8 A0A024R4E5 770 779 HDLBP Vigilin yes no 2 0.013553 49.418 1 1.4767 1.4993 NaN 1 Median 1.4767 1.4993 NaN 1 0 Median NaN NaN NaN 0 0 Median 16695000 7074800 9620500 16695000 7074800 9620500 0 0 0 2172 154 2233 5766 9019 9019 1 DQDLTIPESSTVK AVDAVEEFLRRAKGKDQDLTIPESSTVKGM GKDQDLTIPESSTVKGMMAGPMAAFKWQPT K D Q V K G 0 0 0 2 0 1 1 0 0 1 1 1 0 0 1 2 2 0 0 1 0 0 13 0 1431.7093 K7EQB2 K7EQB2 97 109 GLYR1 yes yes 2 0.00012565 78.342 1 1 1.267 1.3038 NaN 1 Median 1.267 1.3038 NaN 1 0 Median NaN NaN NaN 0 0 Median 19942000 7570300 12372000 18025000 7570300 10454000 1917100 0 1917100 2173 1346 2234 5767;5768 9020;9021 9020 2 DQEALEAVK NKQAEVKKMDSGYRKDQEALEAVKRLKEKL DSGYRKDQEALEAVKRLKEKLEAEMKKLNY K D Q V K R 2 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1001.5029 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 447 455 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 1;2 1.4829E-10 140.45 3 2 0.79645 0.83973 29.254 5 Median 0.73388 0.81565 2.1725 3 0 Median 1.722 1.3977 0.28659 2 0 Median 389800000 203020000 186770000 333030000 181460000 151570000 56765000 21566000 35199000 2174 69 2235 5769;5770;5771;5772;5773 9022;9023;9024;9025;9026;9027;9028;9029;9030;9031;9032 9027 10 DQEEEMDYAPDDVYDYK AYFLPVEETLKKRKRDQEEEMDYAPDDVYD EEEMDYAPDDVYDYKIAREYNWNVKNKASK R D Q Y K I 1 0 0 5 0 1 3 0 0 0 0 1 1 0 1 0 0 0 3 1 0 0 17 0 2123.8154 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 274 290 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 2.3049E-07 86.467 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16611000 0 16611000 16611000 0 16611000 0 0 0 2175 46 2236 5774;5775;5776;5777 9033;9034;9035;9036 9035 26 4 DQEFTVDTR KIKLNGLENRVEVGKDQEFTVDTRGAGGQG RVEVGKDQEFTVDTRGAGGQGKLDVTILSP K D Q T R G 0 1 0 2 0 1 1 0 0 0 0 0 0 1 0 0 2 0 0 1 0 0 9 0 1109.4989 O75369;A0A024R321;Q68CT4;E7EN95 O75369 961 969 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.003088 76.221 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2176 1402 2237 5778;5779 9037;9038 9038 2 DQFGFINYEVGDSK YNITPLRRATVECVKDQFGFINYEVGDSKK KDQFGFINYEVGDSKKLFFHVKEVQDGIEL K D Q S K K 0 0 1 2 0 1 1 2 0 1 0 1 0 2 0 1 0 0 1 1 0 0 14 0 1617.7311 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93;Q8WU01;Q9UG12 Q9GZV0 652 665 CSDE1;UNR;DKFZp586J0620;DKFZp566C233 Cold shock domain-containing protein E1 yes no 2 0.00017456 72.958 1 2.5095 2.4649 NaN 1 Median 2.5095 2.4649 NaN 1 0 Median NaN NaN NaN 0 0 Median 23219000 7339900 15879000 23219000 7339900 15879000 0 0 0 2177 42 2238 5780 9039 9039 1 DQFLDTLQAHGHDVNSFVR VLSGDQLEAAARDTRDQFLDTLQAHGHDVN DTLQAHGHDVNSFVRSRVLQLFTRIVQQKA R D Q V R S 1 1 1 3 0 2 0 1 2 0 2 0 0 2 0 1 1 0 0 2 0 0 19 0 2198.0505 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 363 381 NCAPD2 Condensin complex subunit 1 yes no 3;4 5.5733E-19 125.18 2 4 1.4611 1.2117 16.471 6 Median 0.83444 0.92206 3.2557 2 0 Median 1.4837 1.2647 4.5772 4 0 Median 442610000 191810000 250790000 136070000 69903000 66166000 306540000 121910000 184630000 2178 908 2239 5781;5782;5783;5784;5785;5786 9040;9041;9042;9043;9044;9045;9046;9047;9048;9049;9050;9051;9052 9041 13 DQGTYEDYVEGLR FEHFLPMLQTVAKNKDQGTYEDYVEGLRVF NKDQGTYEDYVEGLRVFDKEGNGTVMGAEI K D Q L R V 0 1 0 2 0 1 2 2 0 0 1 0 0 0 0 0 1 0 2 1 0 0 13 0 1543.6791 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;F8VPF3;G3V1Y7;Q6IBG5;H0YI43;F8VZU9;F8W180 F8W1R7 82 94 MYL6 Myosin light polypeptide 6 yes no 2 6.1524E-19 145.28 2 2 1.5672 1.5085 5.0225 4 Median 1.4017 1.5776 0.84942 2 0 Median 1.7573 1.4469 0.40705 2 0 Median 187990000 76699000 111290000 158110000 65381000 92732000 29874000 11318000 18556000 2179 1101 2240 5787;5788;5789;5790 9053;9054;9055;9056;9057;9058;9059 9056 7 DQIAQLEASLAAAK LGDKKSLEGDLEDLKDQIAQLEASLAAAKK KDQIAQLEASLAAAKKQLADETLLKVDLEN K D Q A K K 5 0 0 1 0 2 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 14 0 1427.762 P20700;E9PBF6;A0A0D9SFE5 P20700 168 181 LMNB1 Lamin-B1 yes no 2 0.0010077 77.279 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6115200 0 6115200 6115200 0 6115200 0 0 0 2180 1502 2241 5791;5792 9060;9061 9061 2 DQIVDLTVGNNK QKNYSPYYNTIDDLKDQIVDLTVGNNKTLL DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF K D Q N K T 0 0 2 2 0 1 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1314.6779 CON__P35527;P35527 CON__P35527 213 224 KRT9 Keratin, type I cytoskeletal 9 yes no 2 3.7507E-08 107.55 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 479520000 479520000 0 392440000 392440000 0 87078000 87078000 0 + 2181 1165 2242 5793;5794 9062;9063;9064 9062 3 DQIYDIFQK FVLDEADEMLSRGFKDQIYDIFQKLNSNTQ LSRGFKDQIYDIFQKLNSNTQVVLLSATMP K D Q Q K L 0 0 0 2 0 2 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 0 9 0 1168.5764 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;B4DNH2;J3QR64;J3KSZ0;J3KTN0;B4DKP9 A8K7F6 194 202 EIF4A1 Eukaryotic initiation factor 4A-I yes no 1;2 3.3014E-07 119.41 3 2 2.0082 2.5181 27.123 4 Linear 1.9315 2.1867 3.8719 2 0 Median 1.7002 1.3697 1.7903 2 0 Median 330320000 125720000 204600000 292200000 110970000 181230000 38122000 14756000 23366000 2182 770 2243 5795;5796;5797;5798;5799 9065;9066;9067;9068;9069;9070;9071 9065 6 DQLDSTGRPLVILPQR RLSILTKSLLLRRTKDQLDSTGRPLVILPQ QLDSTGRPLVILPQRKFQLHHLKLSEDEET K D Q Q R K 0 2 0 2 0 2 0 1 0 1 3 0 0 0 2 1 1 0 0 1 0 0 16 1 1806.9952 A0A024R0F1;Q9UNY4 A0A024R0F1 823 838 TTF2 Transcription termination factor 2 yes no 3 4.5194E-05 79.652 1 0.92052 1.0284 NaN 1 Median 0.92052 1.0284 NaN 1 0 Median NaN NaN NaN 0 0 Median 26015000 12569000 13447000 26015000 12569000 13447000 0 0 0 2183 44 2244 5800 9072;9073 9073 2 DQLLLGPTYATPK KAYLRDFMYVSQDPKDQLLLGPTYATPKVL PKDQLLLGPTYATPKVLEKAGLTMNDIDAF K D Q P K V 1 0 0 1 0 1 0 1 0 0 3 1 0 0 2 0 2 0 1 0 0 0 13 0 1415.766 P55084;B4DY96;B5MD38;F5GZQ3;B4DDC9 P55084 349 361 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 3.0063E-06 108.9 1 1 1.0486 0.98546 35.012 2 Median 1.1571 1.2623 NaN 1 0 Median 0.95019 0.76934 NaN 1 0 Median 44464000 15722000 28743000 40094000 13370000 26723000 4370700 2351500 2019200 2184 1615 2245 5801;5802 9074;9075;9076;9077 9076 4 DQLQEQLQALK EQQKATEKERVAQEKDQLQEQLQALKESLK AQEKDQLQEQLQALKESLKVTKGSLEEEKR K D Q L K E 1 0 0 1 0 4 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1312.6987 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;F5H4J1;A8K394;Q4LE64;Q14980 Q4LE64 698 708 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 9.8957E-09 123.86 1 1 1.1187 1.0454 16.623 2 Median 0.85455 0.92948 NaN 1 0 Median 1.4646 1.1758 NaN 1 0 Median 62339000 28718000 33621000 48115000 23042000 25073000 14224000 5676300 8548000 2185 186;1747;718 2246 5803;5804 9078;9079;9080 9078 3 DQLQTFSEEHPVLLTEAPLNPR DWNDMERIWQYVYSKDQLQTFSEEHPVLLT EEHPVLLTEAPLNPRKNRERAAEVFFETFN K D Q P R K 1 1 1 1 0 2 3 0 1 0 4 0 0 1 3 1 2 0 0 1 0 0 22 0 2533.2813 B4DMT4;B4DXP9;R4GMT0;B4DM97;P61163;A0A1B0GVS3 B4DMT4 23 44 ACTR1A Alpha-centractin yes no 3 1.224E-10 87.156 2 2 1.3792 1.2337 13.611 4 Median 1.4233 1.4155 13.436 2 0 Median 1.3792 1.1672 1.8248 2 0 Median 46451000 18620000 27831000 31704000 12078000 19626000 14747000 6542000 8205200 2186 1004 2247 5805;5806;5807;5808 9081;9082;9083;9084;9085;9086 9085 6 DQLSVLENGVDIVVGTPGR PKLRELLIIGGVAARDQLSVLENGVDIVVG VLENGVDIVVGTPGRLDDLVSTGKLNLSQV R D Q G R L 0 1 1 2 0 1 1 3 0 1 2 0 0 0 1 1 1 0 0 4 0 0 19 0 1967.0324 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 250 268 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 1.0995E-16 116.86 2 1.4204 1.4394 6.7716 2 Median 1.4204 1.4394 6.7716 2 0 Median NaN NaN NaN 0 0 Median 26667000 10333000 16335000 26667000 10333000 16335000 0 0 0 2187 452 2248 5809;5810 9087;9088 9087 2 DQLVYPLLAFTR ANIYKDLQKLSRLFKDQLVYPLLAFTRQAL LFKDQLVYPLLAFTRQALNLPDVFGLVILP K D Q T R Q 1 1 0 1 0 1 0 0 0 0 3 0 0 1 1 0 1 0 1 1 0 0 12 0 1434.7871 Q5HYB3;A8K7F7;Q9Y3I1 Q5HYB3 21 32 DKFZp686B08113;FBXO7 F-box only protein 7 yes no 2 0.005381 51.092 2 1.237 1.3078 15.455 2 Median 1.237 1.3078 15.455 2 0 Median NaN NaN NaN 0 0 Median 7878700 4278100 3600500 7878700 4278100 3600500 0 0 0 2188 771 2249 5811;5812 9089;9090;9091 9091 3 DQMQPGGTAISVTVPYR QGCQRENETLIQRRKDQMQPGGTAISVTVP MQPGGTAISVTVPYRVVDQPLKLMPQDWDR K D Q Y R V 1 1 0 1 0 2 0 2 0 1 0 0 1 0 2 1 2 0 1 2 0 0 17 0 1818.8934 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9 Q6P1J9 410 426 CDC73 Parafibromin yes no 2 2.1919E-07 95.981 1 2.4536 2.4965 NaN 1 Median 2.4536 2.4965 NaN 1 0 Median NaN NaN NaN 0 0 Median 29794000 9067800 20726000 29794000 9067800 20726000 0 0 0 2189 1851 2250 5813 9092;9093 9093 1700 2 DQMQQQLNDYEQLLDVK RRMLTDKEREMAEIRDQMQQQLNDYEQLLD MQQQLNDYEQLLDVKLALDMEISAYRKLLE R D Q V K L 0 0 1 3 0 5 1 0 0 0 3 1 1 0 0 0 0 0 1 1 0 0 17 0 2106.9892 P20700;E9PBF6;B4DZT3 P20700 351 367 LMNB1 Lamin-B1 yes no 2 2.995E-45 164.81 2 1 1.4776 1.6213 46.272 3 Median 1.5179 1.6493 2.4168 2 0 Median 0.90786 0.7404 NaN 1 0 Median 87471000 32797000 54674000 81697000 29958000 51738000 5773700 2838100 2935500 2190 1502 2251 5814;5815;5816 9094;9095;9096;9097 9096 1257 4 DQNIFVSR AKRERFELLKHQKLKDQNIFVSRTRLCLHN LKHQKLKDQNIFVSRTRLCLHNLPKAVDDK K D Q S R T 0 1 1 1 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 8 0 977.49304 A0A024R753;Q9NW13 A0A024R753 479 486 RBM28 RNA-binding protein 28 yes no 2 0.011482 69.825 1 1 1.0458 1.0002 4.8697 2 Median 0.90376 0.96637 NaN 1 0 Median 1.2101 1.0353 NaN 1 0 Median 50989000 25682000 25307000 45061000 23040000 22020000 5928500 2641800 3286800 2191 214 2252 5817;5818 9098;9099;9100;9101 9101 4 DQNILLGTTYR NNVSSYLSKNILAFRDQNILLGTTYRIIAN LAFRDQNILLGTTYRIIANALSSEPACLAE R D Q Y R I 0 1 1 1 0 1 0 1 0 1 2 0 0 0 0 0 2 0 1 0 0 0 11 0 1292.6725 P78527 P78527 3325 3335 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 3.9733E-08 112.83 2 1 0.66203 0.74837 NaN 1 Median 0.66203 0.74837 NaN 1 0 Median NaN NaN NaN 0 0 Median 165510000 121820000 43685000 162280000 121820000 40458000 3226900 0 3226900 2192 1665 2253 5819;5820;5821 9102;9103;9104;9105 9104 4 DQNTVETLQR RIQDKHKKLPEELGRDQNTVETLQRMHTTF EELGRDQNTVETLQRMHTTFEHDIQALGTQ R D Q Q R M 0 1 1 1 0 2 1 0 0 0 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1202.5891 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1749 1758 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0056566 67.881 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2347400 0 2347400 0 0 0 2347400 0 2347400 2193 415 2254 5822 9106 9106 1 DQNYPGAIAIHHPNVAEK ANPAFNLFWAGWDRRDQNYPGAIAIHHPNV YPGAIAIHHPNVAEKRISNSTSPTSFVAWG R D Q E K R 3 0 2 1 0 1 1 1 2 2 0 1 0 0 2 0 0 0 1 1 0 0 18 0 1972.9755 CON__P15636 CON__P15636 343 360 yes yes 2;3;4 4.76E-67 179.97 11 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19717000000 19717000000 0 18458000000 18458000000 0 1259300000 1259300000 0 + 2194 1163 2255 5823;5824;5825;5826;5827;5828;5829;5830;5831;5832;5833;5834;5835;5836;5837;5838 9107;9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9121;9122;9123;9124;9125;9126;9127;9128;9129;9130 9111 24 DQNYPGAIAIHHPNVAEKR ANPAFNLFWAGWDRRDQNYPGAIAIHHPNV PGAIAIHHPNVAEKRISNSTSPTSFVAWGG R D Q K R I 3 1 2 1 0 1 1 1 2 2 0 1 0 0 2 0 0 0 1 1 0 0 19 1 2129.0766 CON__P15636 CON__P15636 343 361 yes yes 3 0.0022562 37.672 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 2195 1163 2256 5839 9131 9131 1 DQSAVVVQGLPEGVAFK GKSTVVPVPYEKMLRDQSAVVVQGLPEGVA SAVVVQGLPEGVAFKHPENYDLATLKWILE R D Q F K H 2 0 0 1 0 2 1 2 0 0 1 1 0 1 1 1 0 0 0 4 0 0 17 0 1742.9203 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9;A0A0A0VEB4 X5D2J9 144 160 GTF2I;GTF2I-RARA General transcription factor II-I yes no 2 6.6809E-05 72.891 2 1.2556 1.0145 1.1347 2 Median NaN NaN NaN 0 0 Median 1.2556 1.0145 1.1347 2 0 Median 14733000 6486600 8246300 0 0 0 14733000 6486600 8246300 2196 789 2257 5840;5841 9132;9133;9134;9135 9134 4 DQSGVQELVK ILVSLLADCNDHQMRDQSGVQELVKQVLST DHQMRDQSGVQELVKQVLSTLRAIAGNDDV R D Q V K Q 0 0 0 1 0 2 1 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 0 1101.5666 Q6NXE6;B4E1N1;Q68CW5;H0YH65 Q6NXE6 336 345 ARMC6;DKFZp762A1314 Armadillo repeat-containing protein 6 yes no 2 0.0016591 72.643 1 0.96914 0.95255 NaN 1 Median 0.96914 0.95255 NaN 1 0 Median NaN NaN NaN 0 0 Median 20121000 8638700 11482000 20121000 8638700 11482000 0 0 0 2197 1848 2258 5842 9136;9137 9137 2 DQSLGNWR DLEGKFVQLKNNSDKDQSLGNWRIKRQVLE LKNNSDKDQSLGNWRIKRQVLEGEEIAYKF K D Q W R I 0 1 1 1 0 1 0 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 8 0 974.45699 Q03252;A0A0A7M1X5 Q03252 495 502 LMNB2 Lamin-B2 yes no 2 0.027455 57.177 2 1.0968 1.0819 NaN 1 Median 1.0968 1.0819 NaN 1 0 Median NaN NaN NaN 0 0 Median 22224000 14874000 7350100 22224000 14874000 7350100 0 0 0 2198 1682 2259 5843;5844 9138;9139 9139 2 DQTDDQVTIDSALATQK LDVQLKYFDLGLPNRDQTDDQVTIDSALAT TDDQVTIDSALATQKYSVAVKCATITPDEA R D Q Q K Y 2 0 0 4 0 3 0 0 0 1 1 1 0 0 0 1 3 0 0 1 0 0 17 0 1847.8749 Q13584;Q53GL5;P48735 Q13584 57 73 IDH2 Isocitrate dehydrogenase [NADP];Isocitrate dehydrogenase [NADP], mitochondrial yes no 2 1.6677E-18 121.24 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2199 1578 2260 5845 9140 9140 1 DQTIVDPFSSK MYIKQVIIQGFRSYRDQTIVDPFSSKHNVI RSYRDQTIVDPFSSKHNVIVGRNGSGKSNL R D Q S K H 0 0 0 2 0 1 0 0 0 1 0 1 0 1 1 2 1 0 0 1 0 0 11 0 1235.6034 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 16 26 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.00045025 77.533 1 2 1.158 0.90852 17.063 3 Median 0.74679 0.73586 NaN 1 0 Median 1.2049 0.9681 8.9829 2 0 Median 24202000 11750000 12452000 19561000 9730800 9829700 4641000 2019100 2622000 2200 803 2261 5846;5847;5848 9141;9142;9143;9144 9142 4 DQTPDENDQVIVK NELQNLTAAEVVVPRDQTPDENDQVIVKII PRDQTPDENDQVIVKIIGHFYASQMAQRKI R D Q V K I 0 0 1 3 0 2 1 0 0 1 0 1 0 0 1 0 1 0 0 2 0 0 13 0 1499.7104 Q9NZI8;D3DTW3 Q9NZI8 526 538 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 2.058E-13 129.16 3 1 3.0325 3.3351 45.127 3 Plateau 2.9155 3.13 20.079 2 0 Median 1.9065 1.4905 NaN 1 0 Median 78257000 20741000 57515000 74856000 19735000 55121000 3400700 1006100 2394600 2201 2087 2262 5849;5850;5851;5852 9145;9146;9147;9148;9149;9150 9149 6 DQTPDENDQVVVK NELQNLSSAEVVVPRDQTPDENDQVVVKIT PRDQTPDENDQVVVKITGHFYACQVAQRKI R D Q V K I 0 0 1 3 0 2 1 0 0 0 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1485.6947 O00425 O00425 526 538 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 1.3476E-20 133.23 4 2 1.0469 0.81612 NaN 1 Median NaN NaN NaN 0 0 Median 1.0469 0.81612 NaN 1 0 Median 52373000 3835600 48537000 46724000 0 46724000 5648300 3835600 1812700 2202 1364 2263 5853;5854;5855;5856;5857;5858 9151;9152;9153;9154;9155;9156;9157 9153 7 DQTPDENEEVIVR NELQNLTSAEVIVPRDQTPDENEEVIVRII PRDQTPDENEEVIVRIIGHFFASQTAQRKI R D Q V R I 0 1 1 2 0 1 3 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 13 0 1542.7162 F8W930;Q9Y6M1 F8W930 554 566 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.0031456 66.262 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5378500 5378500 0 5378500 5378500 0 0 0 0 2203 1267 2264 5859 9158 9158 1 DQVANSAFVER KENQKHIYYITGETKDQVANSAFVERLRKH GETKDQVANSAFVERLRKHGLEVIYMIEPI K D Q E R L 2 1 1 1 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1234.5942 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 500 510 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2 4.7026E-13 125.74 2 1.7231 1.8813 NaN 1 Median 1.7231 1.8813 NaN 1 0 Median NaN NaN NaN 0 0 Median 39101000 15844000 23256000 39101000 15844000 23256000 0 0 0 2204 1348 2265 5860;5861 9159;9160 9159 2 DQVDIAVQELLQLK QGEVVRKLKTEKAPKDQVDIAVQELLQLKA KDQVDIAVQELLQLKAQYKSLIGVEYKPVS K D Q L K A 1 0 0 2 0 3 1 0 0 1 3 1 0 0 0 0 0 0 0 2 0 0 14 0 1610.8879 P07814;V9GYZ6;Q3KQZ8;B4DKX5 P07814 926 939 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0016313 71.085 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2205 1454 2266 5862 9161 9161 1 DQVFIFLK MGLLQFGPTEKFQDKDQVFIFLKKNAVIVD TEKFQDKDQVFIFLKKNAVIVDTTICDPHY K D Q L K K 0 0 0 1 0 1 0 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 8 0 1008.5644 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 990 997 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.014589 62.659 2 0.98687 1.0001 5.8828 2 Median 0.98687 1.0001 5.8828 2 0 Median NaN NaN NaN 0 0 Median 14990000 8333200 6656400 14990000 8333200 6656400 0 0 0 2206 1699 2267 5863;5864 9162;9163 9162 2 DQVIYPDGR FYVPQRPYMTLGTLRDQVIYPDGREDQKRK TLGTLRDQVIYPDGREDQKRKGISDLVLKE R D Q G R E 0 1 0 2 0 1 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 9 0 1061.5142 B4DL07;P28288 B4DL07 545 553 ABCD3 ATP-binding cassette sub-family D member 3 yes no 2 0.0083009 65.305 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2207 994 2268 5865 9164 9164 1 DQVTAQEIFQDNHEDGPTAK SKIKTLFPLIEAKKKDQVTAQEIFQDNHED QEIFQDNHEDGPTAKKLKTEQGGAHFSVSS K D Q A K K 2 0 1 3 0 3 2 1 1 1 0 1 0 1 1 0 2 0 0 1 0 0 20 0 2242.0138 P13010;Q53T09 P13010 546 565 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 4.2761E-24 133.21 5 2 0.35004 0.38535 19.762 7 Median 0.3524 0.39795 4.5976 5 0 Median 0.30985 0.2665 2.4659 2 0 Median 1141600000 846680000 294880000 917160000 675200000 241950000 224400000 171480000 52924000 2208 1476 2269 5866;5867;5868;5869;5870;5871;5872 9165;9166;9167;9168;9169;9170;9171;9172;9173;9174;9175;9176;9177;9178 9174 14 DQVVILHHMLSK ERQRSLFVVVGDRGKDQVVILHHMLSKATV RGKDQVVILHHMLSKATVKARPSVLWCYKK K D Q S K A 0 0 0 1 0 1 0 0 2 1 2 1 1 0 0 1 0 0 0 2 0 0 12 0 1418.7704 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 35 46 NAT10 N-acetyltransferase 10 no no 2;3 0.0011295 47.532 2 2 1.3623 1.4078 20.555 3 Median 1.3536 1.4894 7.9661 2 0 Median 1.3623 1.0575 NaN 1 0 Median 123060000 50589000 72471000 108920000 45476000 63439000 14144000 5112700 9031600 2209 2023;1687 2270;2271 5873;5874;5875;5876 9179;9180;9181;9182 9181 1502 4 DQVYPQYVIEYTEDK VDTRSNPSVFVIFQKDQVYPQYVIEYTEDK DQVYPQYVIEYTEDKACVIS__________ K D Q D K A 0 0 0 2 0 2 2 0 0 1 0 1 0 0 1 0 1 0 3 2 0 0 15 0 1888.8731 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 883 897 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.0006361 53.252 1 1.2839 1.2831 NaN 1 Median 1.2839 1.2831 NaN 1 0 Median NaN NaN NaN 0 0 Median 15252000 7608200 7644300 15252000 7608200 7644300 0 0 0 2210 1873 2272 5877 9183;9184 9184 2 DRDLVTEDTGVR IENAEMSTESYDQGKDRDLVTEDTGVRNEA QGKDRDLVTEDTGVRNEAQEEIYKKGQSKR K D R V R N 0 2 0 3 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 2 0 0 12 1 1374.6739 Q5T0F3;Q13823;B4DPI9 Q5T0F3 179 190 GNL2 Nucleolar GTP-binding protein 2 yes no 2 1.2526E-05 112.43 2 1.0557 1.1756 1.458 2 Median 1.0557 1.1756 1.458 2 0 Median NaN NaN NaN 0 0 Median 89910000 47342000 42568000 89910000 47342000 42568000 0 0 0 2211 1721 2273 5878;5879 9185;9186;9187;9188 9187 4 DRDRERRR ELGPDGPDGPEEKGRDRDRERRRGHRSERE GPEEKGRDRDRERRRGHRSERERRRDRDRD R D R R R G 0 5 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 4 1157.6126 A8KAQ5;A0A024QZD5;P08621;Q9UFS1;B3KPV0 A8KAQ5 349 356 SNRP70;SNRNP70;DKFZp434N041 U1 small nuclear ribonucleoprotein 70 kDa yes no 3 0.050857 25.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2212 17 2274 5880 9189 9189 1 DRDSQITAIEK GVSVKQQFTEEEIYKDRDSQITAIEKTFED EIYKDRDSQITAIEKTFEDAQKSISQHYSK K D R E K T 1 1 0 2 0 1 1 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 11 1 1274.6466 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 171 181 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.001346 90.653 2 1 1.6125 1.8725 21.089 3 Median 1.6417 1.9108 2.864 2 0 Median 1.5769 1.3284 NaN 1 0 Median 72367000 25380000 46988000 69150000 24362000 44789000 3217000 1018000 2199000 2213 46 2275 5881;5882;5883 9190;9191;9192;9193;9194 9193 5 DREDYVPYTGEK EHLLSYLEKEALEHKDREDYVPYTGEKKGK EHKDREDYVPYTGEKKGKTFIPKQKPVQTF K D R E K K 0 1 0 2 0 0 2 1 0 0 0 1 0 0 1 0 1 0 2 1 0 0 12 1 1470.6627 Q5HYL6;Q9NYL9 Q5HYL6 82 93 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 2 0.047294 55.261 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2214 1808 2276 5884 9195 9195 1 DREEDGGGLEPAAVAR GAGAGAGARRPRGTRDREEDGGGLEPAAVA REEDGGGLEPAAVARDLLRGTSNMSFEELL R D R A R D 3 2 0 2 0 0 3 3 0 0 1 0 0 0 1 0 0 0 0 1 0 0 16 1 1640.7754 B2R9K5;Q96EU6 B2R9K5 24 39 RRP36 Ribosomal RNA processing protein 36 homolog yes no 3 0.0079757 24.041 1 0.86212 0.78895 NaN 1 Median NaN NaN NaN 0 0 Median 0.86212 0.78895 NaN 1 0 Median 1689700 991620 698110 0 0 0 1689700 991620 698110 2215 867 2277 5885 9196 9196 1 DREIQLEISGK GTPLTLYYSHWRKLRDREIQLEISGKERLE RKLRDREIQLEISGKERLEDLNFPEIKRRK R D R G K E 0 1 0 1 0 1 2 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1286.683 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7 Q9Y3T9 627 637 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.01974 59.418 1 1.1424 0.9367 NaN 1 Median NaN NaN NaN 0 0 Median 1.1424 0.9367 NaN 1 0 Median 4866800 2099800 2767000 0 0 0 4866800 2099800 2767000 2216 2139 2278 5886 9197 9197 1 DRFTDILVR DILKKRLQLPVWEYKDRFTDILVRHQSFVL PVWEYKDRFTDILVRHQSFVLVGETGSGKT K D R V R H 0 2 0 2 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 1 1133.6193 O43143;B4E0S6 O43143 144 152 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.020794 79.974 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32275000 32275000 0 32275000 32275000 0 0 0 0 2217 1379 2279 5887;5888 9198;9199 9199 2 DRIDAFLR VEELLKEVRLSEKKKDRIDAFLREVNQRVV RLSEKKKDRIDAFLREVNQRVVRVPSVPET K D R L R E 1 2 0 2 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 1 1004.5403 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 103 110 NOL6 Nucleolar protein 6 yes no 2 0.043571 80.165 1 0.98058 1.0652 NaN 1 Median 0.98058 1.0652 NaN 1 0 Median NaN NaN NaN 0 0 Median 35368000 15122000 20246000 35368000 15122000 20246000 0 0 0 2218 2038 2280 5889 9200 9200 1 DRPASGSPFQLFLSK KSNAKLWNEVLASLKDRPASGSPFQLFLSK DRPASGSPFQLFLSKVEETFQCICCQELVF K D R S K V 1 1 0 1 0 1 0 1 0 0 2 1 0 2 2 3 0 0 0 0 0 0 15 1 1648.8573 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 716 730 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.0059211 30.974 2 0.85742 0.75854 6.3321 2 Median NaN NaN NaN 0 0 Median 0.85742 0.75854 6.3321 2 0 Median 3810700 1906900 1903700 0 0 0 3810700 1906900 1903700 2219 406 2281 5890;5891 9201;9202;9203 9203 3 DRPSAAHIVEALETDV KVIELFSVCTNEDPKDRPSAAHIVEALETD RPSAAHIVEALETDV_______________ K D R D V - 3 1 0 2 0 0 2 0 1 1 1 0 0 0 1 1 1 0 0 2 0 0 16 1 1721.8584 V9HWH0;Q96KB5 V9HWH0 307 322 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 3 0.00051278 64.675 1 1 1.2628 1.1801 46.314 2 Median 1.6224 1.6374 NaN 1 0 Median 0.98285 0.85055 NaN 1 0 Median 13027000 4792500 8234800 10330000 3240500 7089100 2697700 1552000 1145700 2220 1975 2282 5892;5893 9204;9205;9206 9204 3 DRVVNLAVDK ILSCRKAGSIMREGRDRVVNLAVDKTGRIL MREGRDRVVNLAVDKTGRILACHGTDSVLE R D R D K T 1 1 1 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 10 1 1127.6299 Q5TDG3;Q9UNX4 Q5TDG3 280 289 WDR3 WD repeat-containing protein 3 yes no 2 0.0043174 81.017 1 1.0018 1.1847 NaN 1 Median 1.0018 1.1847 NaN 1 0 Median NaN NaN NaN 0 0 Median 38814000 16457000 22358000 38814000 16457000 22358000 0 0 0 2221 1827 2283 5894 9207 9207 1 DSAAFEDNEVQDEFLEK DVQEESEGSDTDDNKDSAAFEDNEVQDEFL AAFEDNEVQDEFLEKLETSEFFELTSEEKL K D S E K L 2 0 1 3 0 1 4 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 17 0 1984.8538 Q9UIG0 Q9UIG0 715 731 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 4.5509E-25 170.95 2 2 30.326 24.887 4.2392 3 Median 21.189 23.717 NaN 1 0 Median 30.876 25.343 2.569 2 0 Median 215350000 6028500 209320000 150150000 3963800 146190000 65202000 2064600 63137000 2222 2103 2284 5895;5896;5897;5898 9208;9209;9210;9211 9209 4 DSAIPVESDTDDEGAPR LEEDEAIRKNVNIYRDSAIPVESDTDDEGA AIPVESDTDDEGAPRISLAEMLEDLHISQD R D S P R I 2 1 0 4 0 0 2 1 0 1 0 0 0 0 2 2 1 0 0 1 0 0 17 0 1772.7701 B4DKU1;B3KMN5;B3KT11;C9JA08;Q96D46 B4DKU1 281 297 NMD3 60S ribosomal export protein NMD3 yes no 2 0.00022302 66.989 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2849500 0 2849500 2849500 0 2849500 0 0 0 2223 906 2285 5899 9212 9212 1 DSALEFLTQLSR PVLQKRLCHPCWEVRDSALEFLTQLSRHWG EVRDSALEFLTQLSRHWGGQADFRCALLAS R D S S R H 1 1 0 1 0 1 1 0 0 0 3 0 0 1 0 2 1 0 0 0 0 0 12 0 1378.7092 Q6PJG6 Q6PJG6 518 529 BRAT1 BRCA1-associated ATM activator 1 yes yes 2 0.00018756 84.658 2 1.3365 1.4208 NaN 1 Median 1.3365 1.4208 NaN 1 0 Median NaN NaN NaN 0 0 Median 5162600 3052600 2110000 5162600 3052600 2110000 0 0 0 2224 1856 2286 5900;5901 9213;9214;9215 9214 3 DSALETLQGQLEEK LERSLEAERASRAERDSALETLQGQLEEKA RDSALETLQGQLEEKAQELGHSQSALASAQ R D S E K A 1 0 0 1 0 2 3 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1559.7679 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1161 1174 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 4.7801E-56 180.97 2 2 1.0081 0.93927 37.333 2 Median 0.66837 0.72135 NaN 1 0 Median 1.5205 1.223 NaN 1 0 Median 89421000 35314000 54107000 58532000 17243000 41289000 30889000 18071000 12818000 2225 186;1747 2287 5902;5903;5904;5905 9216;9217;9218;9219;9220;9221 9218 6 DSAVNAICYGAK PLEKLLTSHKRLVMKDSAVNAICYGAKIML VMKDSAVNAICYGAKIMLPGVLRYEDGIEV K D S A K I 3 0 1 1 1 0 0 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 12 0 1267.5867 O60832;H7C2Q2 O60832 303 314 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 2.6986E-06 111.46 2 2 0.74512 0.68194 15.302 4 Median 0.74512 0.77892 6.7416 2 0 Median 0.74668 0.60549 4.7505 2 0 Median 77025000 39504000 37521000 64388000 32473000 31915000 12637000 7030800 5606300 2226 1398 2288 5906;5907;5908;5909 9222;9223;9224;9225;9226;9227 9223 6 DSAYQSITHYRPVSASR SEEECKDRERPMYGRDSAYQSITHYRPVSA AYQSITHYRPVSASRSSLDLSYYPTSSSTS R D S S R S 2 2 0 1 0 1 0 0 1 1 0 0 0 0 1 4 1 0 2 1 0 0 17 1 1936.9391 P50402;Q5HY57 P50402 158 174 EMD Emerin yes no 3 0.014 38.376 2 0.72941 0.78477 NaN 1 Median 0.72941 0.78477 NaN 1 0 Median NaN NaN NaN 0 0 Median 23887000 14067000 9820500 23887000 14067000 9820500 0 0 0 2227 1590 2289 5910;5911 9228;9229 9229 2 DSCNTALVLCPFK GVGTVAREDLPGHLKDSCNTALVLCPFKDS LKDSCNTALVLCPFKDSGCKHRCPKLAMAR K D S F K D 1 0 1 1 2 0 0 0 0 0 2 1 0 1 1 1 1 0 0 1 0 0 13 0 1523.7112 A0A024QZ59;Q9BUZ4;A0A024QZ19;B4DUU9;F6SA91 A0A024QZ59 241 253 TRAF4 TNF receptor-associated factor 4 yes no 2 0.0039427 63.283 2 1 1.7597 1.3828 NaN 1 Median NaN NaN NaN 0 0 Median 1.7597 1.3828 NaN 1 0 Median 6878400 938740 5939700 4610600 0 4610600 2267900 938740 1329100 2228 11 2290 5912;5913;5914 9230;9231;9232;9233 9231 4 DSDEADLVLAK ATDSSGELMFLMKWKDSDEADLVLAKEANM MKWKDSDEADLVLAKEANMKCPQIVIAFYE K D S A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1174.5717 A4D177;Q13185 A4D177 144 154 CBX3 Chromobox protein homolog 3 yes no 2 1.0397E-22 163.32 2 1.0968 1.2432 3.6089 2 Median 1.0968 1.2432 3.6089 2 0 Median NaN NaN NaN 0 0 Median 287230000 140230000 147000000 287230000 140230000 147000000 0 0 0 2229 662 2291 5915;5916 9234;9235;9236;9237 9236 4 DSDENLTDAEGK PAVLSSKRRRISYQRDSDENLTDAEGKVIG YQRDSDENLTDAEGKVIGLQIFNIDTDRAC R D S G K V 1 0 1 3 0 0 2 1 0 0 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1292.5368 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 194 205 CDCA2 Cell division cycle-associated protein 2 yes no 2 3.5524E-05 99.568 1 0.5436 0.54724 NaN 1 Median 0.5436 0.54724 NaN 1 0 Median NaN NaN NaN 0 0 Median 5323400 2906200 2417200 5323400 2906200 2417200 0 0 0 2230 1233 2292 5917 9238 9238 1 DSDGSVVQFLYGEDGLDIPK KHLEGLVVQYDLTVRDSDGSVVQFLYGEDG VVQFLYGEDGLDIPKTQFLQPKQFPFLASN R D S P K T 0 0 0 4 0 1 1 3 0 1 2 1 0 1 1 2 0 0 1 2 0 0 20 0 2153.0164 O95602;B9ZVN9;B7ZKR9;B7Z8X7;B7Z284;Q53T12 O95602 1009 1028 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.004018 30.483 2 0.82815 0.8283 2.4436 2 Median 0.82815 0.8283 2.4436 2 0 Median NaN NaN NaN 0 0 Median 10708000 5006500 5701600 10708000 5006500 5701600 0 0 0 2231 1428 2293 5918;5919 9239;9240 9239 2 DSDPFIRK IMVDKYIPNISMCLKDSDPFIRKQTLILLT NISMCLKDSDPFIRKQTLILLTNLLQEEFV K D S R K Q 0 1 0 2 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 1 976.49779 P42695;G3V1A9;Q96FA6;E9PLE0 P42695 989 996 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.032327 58.194 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10096000 0 10096000 7100600 0 7100600 2994900 0 2994900 2232 1565 2294 5920;5921 9241;9242 9241 2 DSEDMGVVVSLGTGNR SLLGRKILAAIIMKKDSEDMGVVVSLGTGN SEDMGVVVSLGTGNRCVKGDSLSLKGETVN K D S N R C 0 1 1 2 0 0 1 3 0 0 1 0 1 0 0 2 1 0 0 3 0 0 16 0 1634.757 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 877 892 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.017027 40.516 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2233 5 2295 5922 9243 9243 3 1 DSEDNPQTLLFSATCPHWVFNVAK FADQVEEILSVAYKKDSEDNPQTLLFSATC LFSATCPHWVFNVAKKYMKSTYEQVDLIGK K D S A K K 2 0 2 2 1 1 1 0 1 0 2 1 0 2 2 2 2 1 0 2 0 0 24 0 2775.2963 Q9NR30 Q9NR30 364 387 DDX21 Nucleolar RNA helicase 2 yes yes 3 3.9825E-21 107.25 1 1.1352 0.98289 NaN 1 Median NaN NaN NaN 0 0 Median 1.1352 0.98289 NaN 1 0 Median 119030000 55342000 63688000 0 0 0 119030000 55342000 63688000 2234 2065 2296 5923 9244 9244 1 DSEEAEIIR VNYEKLKTDIKVVDRDSEEAEIIRKYVKNT IKVVDRDSEEAEIIRKYVKNTHATTHNAYD R D S I R K 1 1 0 1 0 0 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 9 0 1060.5037 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 807 815 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.8622E-05 119.41 1 0.56263 0.57034 NaN 1 Median 0.56263 0.57034 NaN 1 0 Median NaN NaN NaN 0 0 Median 28560000 16156000 12404000 28560000 16156000 12404000 0 0 0 2235 139 2297 5924 9245;9246 9246 2 DSEEAEIIRK VNYEKLKTDIKVVDRDSEEAEIIRKYVKNT KVVDRDSEEAEIIRKYVKNTHATTHNAYDL R D S R K Y 1 1 0 1 0 0 3 0 0 2 0 1 0 0 0 1 0 0 0 0 0 0 10 1 1188.5986 A0A024R3T8;P09874;B2R5W3 A0A024R3T8 807 816 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.4286E-11 140.45 2 2 0.83603 0.8382 22.662 4 Median 0.59852 0.70901 17.984 2 0 Median 1.1534 0.97102 15.113 2 0 Median 122080000 73959000 48117000 111720000 69142000 42573000 10361000 4817000 5544300 2236 139 2298 5925;5926;5927;5928 9247;9248;9249;9250;9251;9252 9247 5 DSEEFGENEEENVHSK ENQEAHEQDGNDELKDSEEFGENEEENVHS SEEFGENEEENVHSKELLSAEENKRAHELI K D S S K E 0 0 2 1 0 0 6 1 1 0 0 1 0 1 0 2 0 0 0 1 0 0 16 0 1877.7551 H7BXE3;A0A024R5X3;Q9NWH9;H0YKU6;H0YL55 H7BXE3 125 140 SLTM SAFB-like transcription modulator yes no 2 1.4234E-08 104.59 1 1.3218 1.3336 NaN 1 Median 1.3218 1.3336 NaN 1 0 Median NaN NaN NaN 0 0 Median 7921400 2855100 5066300 7921400 2855100 5066300 0 0 0 2237 190 2299 5929 9253;9254 9253 2 DSENLASPSEYPENGER LKNLNNSNLFSPVNRDSENLASPSEYPENG ENLASPSEYPENGERFSFLSKPVDENHQQD R D S E R F 1 1 2 1 0 0 4 1 0 0 1 0 0 0 2 3 0 0 1 0 0 0 17 0 1892.8024 P52948;A0A024RCC4;Q86TI1;B4DWF8;A8KA17 P52948 617 633 NUP98;NUP98/HOXC13 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0034408 53.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2238 1603 2300 5930 9255 9255 1 DSEPLGIEEAQIGK TITFPAMVHRTAGQKDSEPLGIEEAQIGKR KDSEPLGIEEAQIGKRGYLTPTSAREHLSA K D S G K R 1 0 0 1 0 1 3 2 0 2 1 1 0 0 1 1 0 0 0 0 0 0 14 0 1484.7359 O95602;B9ZVN9;B7ZKR9 O95602 239 252 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.0053616 43.897 2 0.80942 0.82814 10.518 2 Median 0.80942 0.82814 10.518 2 0 Median NaN NaN NaN 0 0 Median 18250000 9346600 8903500 18250000 9346600 8903500 0 0 0 2239 1428 2301 5931;5932 9256;9257;9258 9258 3 DSEPSSTVSLNGTFFK SLEEQLSALTLSELRDSEPSSTVSLNGTFF SEPSSTVSLNGTFFKMELFEGMRESTKISS R D S F K M 0 0 1 1 0 0 1 1 0 0 1 1 0 2 1 4 2 0 0 1 0 0 16 0 1714.805 A0A024R0F1;Q9UNY4 A0A024R0F1 965 980 TTF2 Transcription termination factor 2 yes no 2 0.0032483 37.426 1 2 1.6775 1.3233 36.333 3 Median 0.71426 0.71298 NaN 1 0 Median 1.6909 1.3374 1.5035 2 0 Median 23018000 12556000 10462000 14680000 9484400 5195300 8338400 3072000 5266400 2240 44 2302 5933;5934;5935 9259;9260;9261;9262 9262 4 DSETVDEDEEVDPALTVGTIK VEGPAAKRTMRPTQKDSETVDEDEEVDPAL EDEEVDPALTVGTIKKHTLSIGDMVTGTVK K D S I K K 1 0 0 4 0 0 4 1 0 1 1 1 0 0 1 1 3 0 0 3 0 0 21 0 2261.0434 Q14690;B4DH82 Q14690 1009 1029 PDCD11 Protein RRP5 homolog yes no 2 9.2404E-07 57.328 2 2 1.3015 1.1475 4.5736 3 Median 1.0233 1.1475 NaN 1 0 Median 1.3527 1.1103 5.8822 2 0 Median 146580000 60941000 85642000 93847000 38019000 55828000 52736000 22922000 29814000 2241 1741 2303 5936;5937;5938;5939 9263;9264;9265;9266;9267;9268;9269;9270;9271;9272 9266 10 DSETVDEDEEVDPALTVGTIKK VEGPAAKRTMRPTQKDSETVDEDEEVDPAL DEEVDPALTVGTIKKHTLSIGDMVTGTVKS K D S K K H 1 0 0 4 0 0 4 1 0 1 1 2 0 0 1 1 3 0 0 3 0 0 22 1 2389.1384 Q14690;B4DH82 Q14690 1009 1030 PDCD11 Protein RRP5 homolog yes no 3 0.0010052 27.739 2 1.3595 1.1754 3.1694 2 Median NaN NaN NaN 0 0 Median 1.3595 1.1754 3.1694 2 0 Median 6816800 2863300 3953500 0 0 0 6816800 2863300 3953500 2242 1741 2304 5940;5941 9273;9274;9275;9276;9277 9277 5 DSFAQQLHQEAER GGERRSLESCLLDLRDSFAQQLHQEAERQP LRDSFAQQLHQEAERQPGAASLTAAQLLDT R D S E R Q 2 1 0 1 0 3 2 0 1 0 1 0 0 1 0 1 0 0 0 0 0 0 13 0 1557.7172 J3KPS2;Q6ZRV2 J3KPS2 522 534 FAM83H Protein FAM83H yes no 2 0.0003876 87.001 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2243 1327 2305 5942 9278 9278 1 DSFIGENSR AHTPFRESKLTQVLRDSFIGENSRTCMIAT LTQVLRDSFIGENSRTCMIATISPGISSCE R D S S R T 0 1 1 1 0 0 1 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 9 0 1023.4621 B0AZS5;O00139;A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1;H0Y5Z9 A8K3S3 550 558 KIF2A;KIF2C Kinesin-like protein;Kinesin-like protein KIF2A;Kinesin-like protein KIF2C no no 2 0.0032669 72.23 2 0.79683 0.88337 9.9197 2 Median 0.79683 0.88337 9.9197 2 0 Median NaN NaN NaN 0 0 Median 100110000 54134000 45981000 100110000 54134000 45981000 0 0 0 2244 626;804 2306 5943;5944 9279;9280;9281 9281 3 DSGDGVTHTVPIYEGYALPHAILR ______________________________ VPIYEGYALPHAILRLDLAGRDLTDYLMKI M D S L R L 2 1 0 2 0 0 1 3 2 2 2 0 0 0 2 1 2 0 2 2 0 0 24 0 2580.2973 V9HVZ7 V9HVZ7 2 25 HEL-176 yes yes 3 8.4181E-06 38.583 2 2.6332 2.1779 0.51038 2 Median NaN NaN NaN 0 0 Median 2.6332 2.1779 0.51038 2 0 Median 19805000 5164900 14640000 0 0 0 19805000 5164900 14640000 2245 2186 2307 5945;5946 9282;9283;9284 9283 3 DSGEEAAEPSAPSR GGGGGAQMAATVPSRDSGEEAAEPSAPSRT RDSGEEAAEPSAPSRTPQCEPQAPEMLQRA R D S S R T 3 1 0 1 0 0 3 1 0 0 0 0 0 0 2 3 0 0 0 0 0 0 14 0 1401.6008 Q00653;A0A1P8C958 Q00653 415 428 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2 0.0012497 72.652 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1317500 0 1317500 1317500 0 1317500 0 0 0 2246 1674 2308 5947 9285 9285 1 DSGLVSQQLPWLFEK VTTSCSSILCSGAQRDSGLVSQQLPWLFEK DSGLVSQQLPWLFEKDHMVVGHWENRFAKA R D S E K D 0 0 0 1 0 2 1 1 0 0 3 1 0 1 1 2 0 1 0 1 0 0 15 0 1745.8988 A8K4P8;Q14146;Q6PCC8 A8K4P8 830 844 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 2 0.0012327 58.172 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2247 738 2309 5948 9286 9286 1 DSGNLYDSEIQNVLGVK LEDPSEFETPALSTKDSGNLYDSEIQNVLG GNLYDSEIQNVLGVKHGHDMQPACQNDSKI K D S V K H 0 0 2 2 0 1 1 2 0 1 2 1 0 0 0 2 0 0 1 2 0 0 17 0 1849.9058 Q562F6;B7Z7S9 Q562F6 773 789 SGOL2 Shugoshin-like 2 yes no 2 2.2157E-09 108.68 2 2 1.1044 1.1551 7.1282 2 Median 1.1044 1.1551 7.1282 2 0 Median NaN NaN NaN 0 0 Median 54501000 15070000 39432000 36172000 15070000 21103000 18329000 0 18329000 2248 1795 2310 5949;5950;5951;5952 9287;9288;9289;9290;9291;9292 9292 6 DSGPLSDPITGK PELRLQSDDILPLGKDSGPLSDPITGKPYV LGKDSGPLSDPITGKPYVPLLEAEEVRLSQ K D S G K P 0 0 0 2 0 0 0 2 0 1 1 1 0 0 2 2 1 0 0 0 0 0 12 0 1185.5877 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 361 372 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0010019 62.633 2 1.2626 1.2706 7.5815 2 Median 1.2626 1.2706 7.5815 2 0 Median NaN NaN NaN 0 0 Median 37437000 16090000 21347000 37437000 16090000 21347000 0 0 0 2249 122 2311 5953;5954 9293;9294;9295 9293 3 DSGPLSDPITGKPYVPLLEAEEVR PELRLQSDDILPLGKDSGPLSDPITGKPYV TGKPYVPLLEAEEVRLSQSLLELWRRRGPV K D S V R L 1 1 0 2 0 0 3 2 0 1 3 1 0 0 4 2 1 0 1 2 0 0 24 1 2581.3275 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 361 384 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 0.0018804 24.397 2 1.5126 1.2562 1.7214 2 Median NaN NaN NaN 0 0 Median 1.5126 1.2562 1.7214 2 0 Median 12106000 4252800 7853400 0 0 0 12106000 4252800 7853400 2250 122 2312 5955;5956 9296;9297;9298 9298 3 DSGSQEVLSELR ELSQDAEPAGSQETKDSGSQEVLSELRVLS ETKDSGSQEVLSELRVLSQKLKENHQSRKQ K D S L R V 0 1 0 1 0 1 2 1 0 0 2 0 0 0 0 3 0 0 0 1 0 0 12 0 1318.6365 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 450 461 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 1.7019E-73 215.56 2 2 1.2126 1.1795 4.7017 4 Median 0.99723 1.124 4.4869 2 0 Median 1.4616 1.2029 0.4436 2 0 Median 174040000 79776000 94263000 143250000 67387000 75865000 30787000 12389000 18398000 2251 2008 2313 5957;5958;5959;5960 9299;9300;9301;9302;9303;9304;9305 9303 7 DSGTMWQLK REALEVAVAGTELFRDSGTMWQLKLQVLIE GTELFRDSGTMWQLKLQVLIESKSPDIAML R D S L K L 0 0 0 1 0 1 0 1 0 0 1 1 1 0 0 1 1 1 0 0 0 0 9 0 1064.4961 B3KQ21;Q9NYH9;B3KX32 B3KQ21 401 409 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.0070717 55.531 2 1.102 1.1636 4.8613 2 Median 1.102 1.1636 4.8613 2 0 Median NaN NaN NaN 0 0 Median 40169000 18953000 21216000 40169000 18953000 21216000 0 0 0 2252 925 2314 5961;5962 9306;9307 9307 759 2 DSIANATVLLDYHLNYLK KAWQGMVPFVFVGTKDSIANATVLLDYHLN ANATVLLDYHLNYLKEVDQLRLERLQIDEQ K D S L K E 2 0 2 2 0 0 0 0 1 1 4 1 0 0 0 1 1 0 2 1 0 0 18 0 2062.0735 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;R9WPL0;A0A087WXI3;B4DFH8;B4DZ17 X5DQX7 408 425 FMR1 Fragile X mental retardation protein 1 yes no 2 3.3994E-05 63.76 1 1 1.4142 1.3024 1.7912 2 Median 1.2117 1.286 NaN 1 0 Median 1.6505 1.319 NaN 1 0 Median 32439000 13790000 18649000 23419000 10120000 13299000 9019600 3669800 5349800 2253 1689 2315 5963;5964 9308;9309 9308 2 DSIFEPAK FLYSELMKYNSQTAKDSIFEPAKGGEKLQI YNSQTAKDSIFEPAKGGEKLQIKKAVSFHL K D S A K G 1 0 0 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 905.44945 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 937 944 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.033654 49.833 1 1.9902 2.0817 NaN 1 Median 1.9902 2.0817 NaN 1 0 Median NaN NaN NaN 0 0 Median 24236000 7010600 17225000 24236000 7010600 17225000 0 0 0 2254 5 2316 5965 9310 9310 1 DSIFSNLTGQLDYQGFEK LNDKVKKKALTSFERDSIFSNLTGQLDYQG FSNLTGQLDYQGFEKADMVIEAVFEDLSLK R D S E K A 0 0 1 2 0 2 1 2 0 1 2 1 0 2 0 2 1 0 1 0 0 0 18 0 2060.9691 E9KL44;P40939;B4DRH6;B4DDZ5 E9KL44 423 440 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 3.4642E-08 96.464 2 1.3421 1.3493 6.1861 2 Median 1.3421 1.3493 6.1861 2 0 Median NaN NaN NaN 0 0 Median 55901000 23004000 32897000 55901000 23004000 32897000 0 0 0 2255 1228 2317 5966;5967 9311;9312;9313;9314 9313 4 DSIIYLTADSPNVMTTFR LLTSTEKSHVDLFPKDSIIYLTADSPNVMT IYLTADSPNVMTTFRHDKVYVIGSFVDKSM K D S F R H 1 1 1 2 0 0 0 0 0 2 1 0 1 1 1 2 3 0 1 1 0 0 18 0 2042.9983 Q7L0Y3;C9JVB6 Q7L0Y3 285 302 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 0.0001792 57.802 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9074300 0 9074300 9074300 0 9074300 0 0 0 2256 1871 2318 5968;5969 9315;9316 9315 1722 2 DSITPDIATKPGQPLFLDSISPK NVRRHFDEVHRGLRRDSITPDIATKPGQPL TKPGQPLFLDSISPKKSFKTRKQKSSSKAE R D S P K K 1 0 0 3 0 1 0 1 0 3 2 2 0 1 4 3 2 0 0 0 0 0 23 1 2439.2897 Q2TB10;B7Z4V7;Q49A13 Q2TB10 316 338 ZNF800 Zinc finger protein 800 yes no 3 9.0973E-06 44.258 2 2.1286 1.8151 11.791 2 Median NaN NaN NaN 0 0 Median 2.1286 1.8151 11.791 2 0 Median 13488000 4124700 9363500 0 0 0 13488000 4124700 9363500 2257 1777 2319 5970;5971 9317;9318 9317 2 DSIVHQAGMLK NVSLLYDLENLPASKDSIVHQAGMLKRNCF PASKDSIVHQAGMLKRNCFASVFEKYFQFQ K D S L K R 1 0 0 1 0 1 0 1 1 1 1 1 1 0 0 1 0 0 0 1 0 0 11 0 1197.6176 Q9BXV5;Q53R19;O15144 Q9BXV5 52 62 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 0.016773 46.022 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2258 1375 2320 5972 9319 9319 1038 1 DSIVQGFQWGTR TLPSEVGKALLGSVKDSIVQGFQWGTREGP SVKDSIVQGFQWGTREGPLCDELIRNVKFK K D S T R E 0 1 0 1 0 2 0 2 0 1 0 0 0 1 0 1 1 1 0 1 0 0 12 0 1392.6786 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2;K7EP67;K7EJ74 B4DZB1 715 726 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.00019323 77.379 1 1 0.89117 0.84312 4.9131 2 Median 0.85355 0.87293 NaN 1 0 Median 0.93045 0.81433 NaN 1 0 Median 22553000 10991000 11562000 18989000 9658400 9330100 3564600 1332800 2231800 2259 794 2321 5973;5974 9320;9321;9322 9320 3 DSLDPSFTHAMQLLTAEIEK MEPENKYLPELMAEKDSLDPSFTHAMQLLT SFTHAMQLLTAEIEKIQKGDSKKDDEENYL K D S E K I 2 0 0 2 0 1 2 0 1 1 3 1 1 1 1 2 2 0 0 0 0 0 20 0 2245.0936 B4DDX2;Q07666;B4E043;B2R7B5 B4DDX2 92 111 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 3 9.7244E-14 109.03 4 1.6954 1.7382 36.772 4 Median 1.6954 1.7382 36.772 4 0 Median NaN NaN NaN 0 0 Median 87942000 26132000 61810000 87942000 26132000 61810000 0 0 0 2260 962 2322 5975;5976;5977;5978 9323;9324;9325;9326 9324 774 4 DSLGAYSETHSDDVTQVR FWDARMNSQNLSTTKDSLGAYSETHSDDVT GAYSETHSDDVTQVRFHPSNPNMVVSGSSD K D S V R F 1 1 0 3 0 1 1 1 1 0 1 0 0 0 0 3 2 0 1 2 0 0 18 0 1978.8868 A0A024R667;Q96FK6;G3V4B8 A0A024R667 160 177 C14orf150;WDR89 WD repeat-containing protein 89 yes no 3 0.0028831 47.68 2 0.69102 0.70656 NaN 1 Median 0.69102 0.70656 NaN 1 0 Median NaN NaN NaN 0 0 Median 20307000 13682000 6624800 20307000 13682000 6624800 0 0 0 2261 198 2323 5979;5980 9327;9328 9328 2 DSLIFLVDASK EENLEASGDYKYSGRDSLIFLVDASKAMFE YSGRDSLIFLVDASKAMFESQSEDELTPFD R D S S K A 1 0 0 2 0 0 0 0 0 1 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1206.6496 A0A024R1N4;P12956;B2RDN9 A0A024R1N4 36 46 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 2.1791E-05 104.22 3 2 0.34927 0.33907 37.013 4 Median 0.40671 0.46458 0.86322 2 0 Median 0.29721 0.24483 2.3813 2 0 Median 405300000 292500000 112800000 335470000 238080000 97389000 69833000 54417000 15415000 2262 82 2324 5981;5982;5983;5984;5985 9329;9330;9331;9332;9333;9334;9335;9336;9337 9335 9 DSLIIIDELGR AEMLETASILRSATKDSLIIIDELGRGTST SATKDSLIIIDELGRGTSTYDGFGLAWAIS K D S G R G 0 1 0 2 0 0 1 1 0 3 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1242.682 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;B4DL39;B4DSB9;B4DN49 V9H019 742 752 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.00043595 78.655 2 1.0055 1.0212 0.52043 2 Median 1.0055 1.0212 0.52043 2 0 Median NaN NaN NaN 0 0 Median 26988000 14936000 12052000 26988000 14936000 12052000 0 0 0 2263 1237 2325 5986;5987 9338;9339 9339 2 DSLTLVFVETK DKRSFLLDLLNATGKDSLTLVFVETKKGAD ATGKDSLTLVFVETKKGADSLEDFLYHEGY K D S T K K 0 0 0 1 0 0 1 0 0 0 2 1 0 1 0 1 2 0 0 2 0 0 11 0 1250.6758 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1 A0A0D9SFB3 441 451 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 7.8874E-05 98.048 2 1 1.3646 1.9202 37.824 3 Plateau 1.4738 1.5037 46.232 2 0 Median 1.3646 1.0816 NaN 1 0 Median 22487000 9913600 12574000 18270000 8313000 9956600 4217700 1600600 2617100 2264 522 2326 5988;5989;5990 9340;9341;9342;9343 9342 4 DSLVDIIGICK QFDFTGIDDLENKSKDSLVDIIGICKSYED NKSKDSLVDIIGICKSYEDATKITVRSNNR K D S C K S 0 0 0 2 1 0 0 1 0 3 1 1 0 0 0 1 0 0 0 1 0 0 11 0 1231.6482 P27694;I3L4R8 P27694 314 324 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.00040918 80.755 2 2 0.44343 0.40203 58.838 4 Median 0.67127 0.67638 6.7454 2 0 Median 0.2983 0.2448 3.3289 2 0 Median 25369000 15843000 9525500 20605000 12574000 8031100 4763800 3269400 1494400 2265 1525 2327 5991;5992;5993;5994 9344;9345;9346;9347;9348;9349;9350 9346 7 DSLVLNNITR LKFIDPFCRIAARTKDSLVLNNITRGIFET AARTKDSLVLNNITRGIFETIVEQAPLAIE K D S T R G 0 1 2 1 0 0 0 0 0 1 2 0 0 0 0 1 1 0 0 1 0 0 10 0 1143.6248 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 211 220 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 0.0022851 80.231 2 1 1.3689 1.4335 16.655 3 Median 1.1801 1.3281 22.714 2 0 Median 1.7498 1.4335 NaN 1 0 Median 195920000 75854000 120060000 179320000 69800000 109520000 16594000 6053500 10540000 2266 1618 2328 5995;5996;5997 9351;9352;9353;9354;9355 9354 5 DSLVQSCPGSLSLCAGVK SLSGSKSPCPQEKSKDSLVQSCPGSLSLCA VQSCPGSLSLCAGVKSSTPPGESYFGVSSL K D S V K S 1 0 0 1 2 1 0 2 0 0 3 1 0 0 1 4 0 0 0 2 0 0 18 0 1876.9023 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1023 1040 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.00042556 60.448 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9764200 9764200 0 9764200 9764200 0 0 0 0 2267 619 2329 5998;5999 9356;9357 9357 2 DSLYKPILR GQLRLAHGVRLKANKDSLYKPILRQKKHFN RLKANKDSLYKPILRQKKHFNSLHIPKALQ K D S L R Q 0 1 0 1 0 0 0 0 0 1 2 1 0 0 1 1 0 0 1 0 0 0 9 1 1103.6339 Q14692 Q14692 1148 1156 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0086405 83.265 1 2 1.3552 1.1576 4.0021 2 Median NaN NaN NaN 0 0 Median 1.3552 1.1576 4.0021 2 0 Median 25230000 10222000 15008000 0 0 0 25230000 10222000 15008000 2268 1742 2330 6000;6001;6002 9358;9359;9360 9360 3 DSNELSDSAGEEDSADLK ERCKRGRFVVKEEKKDSNELSDSAGEEDSA ELSDSAGEEDSADLKRAQKDKGLHVEVRVN K D S L K R 2 0 1 4 0 0 3 1 0 0 2 1 0 0 0 4 0 0 0 0 0 0 18 0 1880.7759 Q9Y6X9 Q9Y6X9 772 789 MORC2 MORC family CW-type zinc finger protein 2 yes yes 2 0.0058441 48.527 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2269 2154 2331 6003 9361 9361 1 DSNNLCLHFNPR EVAPDAKSFVLNLGKDSNNLCLHFNPRFNA LGKDSNNLCLHFNPRFNAHGDANTIVCNSK K D S P R F 0 1 3 1 1 0 0 0 1 0 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1485.6783 P09382 P09382 38 49 LGALS1 Galectin-1 yes yes 3 4.5777E-06 89.548 1 2 3.0812 2.7857 54.019 3 Median 6.1988 6.4295 NaN 1 0 Median 2.8926 2.5536 12.305 2 0 Median 27483000 3983900 23500000 22698000 2603000 20095000 4785000 1380900 3404100 2270 1460 2332 6004;6005;6006 9362;9363;9364 9362 3 DSNPDEIEIDFETLKPTTLR GRVVHIIQSREPSLRDSNPDEIEIDFETLK EIEIDFETLKPTTLRELERYVKSCLQKKQR R D S L R E 0 1 1 3 0 0 3 0 0 2 2 1 0 1 2 1 3 0 0 0 0 0 20 1 2332.1434 A0A024R8H6;Q15059;B4DS09 A0A024R8H6 608 627 BRD3 Bromodomain-containing protein 3 yes no 3 0.027203 24.893 1 0.45411 0.50147 NaN 1 Median 0.45411 0.50147 NaN 1 0 Median NaN NaN NaN 0 0 Median 6867700 5011100 1856600 6867700 5011100 1856600 0 0 0 2271 249 2333 6007 9365 9365 0 DSNPEEIEIDFETLKPSTLR GRVVHIIQAREPSLRDSNPEEIEIDFETLK EIEIDFETLKPSTLRELERYVLSCLRKKPR R D S L R E 0 1 1 2 0 0 4 0 0 2 2 1 0 1 2 2 2 0 0 0 0 0 20 1 2332.1434 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A0G2JHN8;A0A140T9I1 A0A024RCR5 678 697 BRD2 Bromodomain-containing protein 2 yes no 2;3 0.0033702 30.543 4 1.0208 0.84613 9.2551 4 Median NaN NaN NaN 0 0 Median 1.0208 0.84613 9.2551 4 0 Median 17976000 8490000 9486300 0 0 0 17976000 8490000 9486300 2272 367 2334 6008;6009;6010;6011 9366;9367;9368;9369 9369 4 DSPAFPDSPWR SASKLRIAQVSPGPRDSPAFPDSPWRERVL PGPRDSPAFPDSPWRERVLAPILPDNFSTP R D S W R E 1 1 0 2 0 0 0 0 0 0 0 0 0 1 3 2 0 1 0 0 0 0 11 0 1273.5728 Q9NQS7;B3KPD3 Q9NQS7 268 278 INCENP Inner centromere protein yes no 2 0.00079231 70.908 2 2 2.0154 1.6271 21.085 3 Median 1.0957 1.1389 NaN 1 0 Median 2.0199 1.6405 1.1538 2 0 Median 47698000 20259000 27439000 22211000 12409000 9801500 25488000 7850000 17638000 2273 2059 2335 6012;6013;6014;6015 9370;9371;9372;9373 9371 4 DSPFGLSFVR RWDRVKIVCSQPYSKDSPFGLSFVRFHSPP QPYSKDSPFGLSFVRFHSPPDKDEAEAPSQ K D S V R F 0 1 0 1 0 0 0 1 0 0 1 0 0 2 1 2 0 0 0 1 0 0 10 0 1123.5662 F5H8D7;A0A024R0S8;Q59HH7;B4DTD3;P18887;B2RCY5;B4DEB2;M0QZ96;M0R0D2;M0R1U8;M0QYS5 F5H8D7 108 117 XRCC1 DNA repair protein XRCC1 yes no 2 0.009241 54.982 1 2 0.56766 0.4889 14.952 3 Median 0.57476 0.56973 NaN 1 0 Median 0.53384 0.45448 10.324 2 0 Median 21576000 14155000 7420500 15737000 10662000 5075000 5838500 3493000 2345600 2274 58 2336 6016;6017;6018 9374;9375;9376;9377 9374 4 DSPSVWAAVPGK MADGTCQDAAIVGYKDSPSVWAAVPGKTFV GYKDSPSVWAAVPGKTFVNITPAEVGVLVG K D S G K T 2 0 0 1 0 0 0 1 0 0 0 1 0 0 2 2 0 1 0 2 0 0 12 0 1212.6139 P07737;CON__P02584;I3L3D5 P07737 27 38 PFN1 Profilin-1 yes no 2 0.0048177 63.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8976300 0 8976300 8976300 0 8976300 0 0 0 2275 1453 2337 6019 9378 9378 1 DSPTQEREELFIQK NLSKNRELQKLPALKDSPTQEREELFIQKL KDSPTQEREELFIQKLRQCCVLFDFVSDPL K D S Q K L 0 1 0 1 0 2 3 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 14 1 1718.8475 B4DSD7;E9PFR3;A8K6Y2;A0A024RD11;Q14738;Q59EF0;H0Y8C4 B4DSD7 65 78 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 2 0.033029 52.247 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2276 375 2338 6020 9379 9379 1 DSQDAGGFGPEDR QALHSLELHYQAFLRDSQDAGGFGPEDRLM LRDSQDAGGFGPEDRLMAEREYGSCSHHYQ R D S D R L 1 1 0 3 0 1 1 3 0 0 0 0 0 1 1 1 0 0 0 0 0 0 13 0 1349.5484 Q15149 Q15149 1076 1088 PLEC Plectin yes yes 2 0.00015089 89.356 2 1 1.4033 1.4659 8.4269 2 Median 1.4033 1.4659 8.4269 2 0 Median NaN NaN NaN 0 0 Median 48187000 20071000 28116000 46872000 20071000 26801000 1315300 0 1315300 2277 1754 2339 6021;6022;6023 9380;9381;9382;9383 9381 4 DSSLVNEQSQITR IHKERPQKHSHEIFRDSSLVNEQSQITRRK FRDSSLVNEQSQITRRKKRKKDFQHLISSP R D S T R R 0 1 1 1 0 2 1 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 13 0 1475.7216 B4DZG2;A0A024R8C1;Q15361 B4DZG2 39 51 TTF1 Transcription termination factor 1 yes no 2 9.4251E-24 157.97 3 1 1.1957 1.154 25.729 2 Median 0.88897 0.96207 NaN 1 0 Median 1.6083 1.3843 NaN 1 0 Median 43300000 14431000 28868000 36056000 11673000 24383000 7243900 2758100 4485800 2278 247 2340 6024;6025;6026;6027 9384;9385;9386;9387;9388 9387 5 DSSQSPSQVDQFCK PIPAVLLANKCDQNKDSSQSPSQVDQFCKE KDSSQSPSQVDQFCKEHGFAGWFETSAKDN K D S C K E 0 0 0 2 1 3 0 0 0 0 0 1 0 1 1 4 0 0 0 1 0 0 14 0 1611.6835 B2R5I8;Q13637 B2R5I8 150 163 RAB32 Ras-related protein Rab-32 yes no 2 0.00056856 78.342 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2206700 0 2206700 2206700 0 2206700 0 0 0 2279 833 2341 6028 9389 9389 1 DSSQVHPLAVLLLTDGDVHIR TYFMAVKSNGSVFVRDSSQVHPLAVLLLTD PLAVLLLTDGDVHIRDDGRRATISLSDSDL R D S I R D 1 1 0 3 0 1 0 1 2 1 4 0 0 0 1 2 1 0 0 3 0 0 21 0 2284.2175 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 1062 1082 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 2.225E-05 41.256 1 2 1.4409 1.2165 9.683 2 Median NaN NaN NaN 0 0 Median 1.4409 1.2165 9.683 2 0 Median 17037000 4719900 12317000 5034000 0 5034000 12003000 4719900 7283500 2280 122 2342 6029;6030;6031 9390;9391;9392;9393;9394;9395 9393 6 DSSSPWQCPVCR RVYHSKCLSDEFRLRDSSSPWQCPVCRSIK RLRDSSSPWQCPVCRSIKKKNTNKQEMGTY R D S C R S 0 1 0 1 2 1 0 0 0 0 0 0 0 0 2 3 0 1 0 1 0 0 12 0 1477.6078 Q15326;E7ENI9;J3QKD2;Q6PJR5;E7EV75 Q15326 135 146 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 2 0.0015283 60.91 2 1.1343 1.1485 11.237 2 Median 1.1343 1.1485 11.237 2 0 Median NaN NaN NaN 0 0 Median 17905000 8676200 9229000 17905000 8676200 9229000 0 0 0 2281 1758 2343 6032;6033 9396;9397;9398;9399 9397 4 DSTEYFIVFEPR AEIMSLVLAESSPGRDSTEYFIVFEPRLPL PGRDSTEYFIVFEPRLPLLSRTLEPYILPF R D S P R L 0 1 0 1 0 0 2 0 0 1 0 0 0 2 1 1 1 0 1 1 0 0 12 0 1501.7089 A6NHR9;J3KTL8 A6NHR9 1585 1596 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.00018123 85.958 2 2 1.2722 1.1541 16.503 4 Median 1.018 1.034 6.1822 2 0 Median 1.5573 1.3349 11.231 2 0 Median 33566000 15862000 17704000 25671000 13087000 12584000 7895100 2775300 5119800 2282 684 2344 6034;6035;6036;6037 9400;9401;9402;9403;9404;9405;9406;9407 9403 8 DSTLIMQLLR EAIAELDTLSEESYKDSTLIMQLLRDNLTL EESYKDSTLIMQLLRDNLTLWTSDTQGDEA K D S L R D 0 1 0 1 0 1 0 0 0 1 3 0 1 0 0 1 1 0 0 0 0 0 10 0 1188.6536 D0PNI1;P63104;B0AZS6;E7EX29;B7Z2E6;H0YB80;Q2F831;P31947;P27348;Q53S41;B4DMT8;B4DY04;V9HWD6;P31946;B5BU24;A0A024R1K7;Q04917;Q9H4N8;B2R6N6;B4DE78;B3KNB4;P61981;B4DHC4;V9HW98;P62258;G9K389;G9K388;B7ZA86;K7EM20 D0PNI1 213 222 YWHAZ;SFN;YWHAQ;HEL-S-1;YWHAB;YWHAH;YWHAG;HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein eta;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon no no 2 4.626E-06 105.57 6 2.1792 2.2092 19.815 6 Median 2.1792 2.2092 19.815 6 0 Median NaN NaN NaN 0 0 Median 95548000 29500000 66049000 95548000 29500000 66049000 0 0 0 2283 1182;1637;1523;912;1536;78 2345;2346 6038;6039;6040;6041;6042;6043 9408;9409;9410;9411;9412;9413;9414;9415;9416;9417;9418;9419;9420 9408 48 13 DSVAQGTTNVHSSEHAGR HIKNVKEDSTADDSKDSVAQGTTNVHSSEH AQGTTNVHSSEHAGRNGRNAADPISGDFKE K D S G R N 2 1 1 1 0 1 1 2 2 0 0 0 0 0 0 3 2 0 0 2 0 0 18 0 1851.846 P46013 P46013 173 190 MKI67 Antigen KI-67 yes yes 2;3 3.6276E-64 147.12 3 2 1.9512 2.1732 21.528 5 Median 1.7966 2.0456 10.353 3 0 Median 3.3196 2.8799 2.3805 2 0 Median 330380000 99402000 230980000 202610000 69026000 133580000 127770000 30375000 97399000 2284 1569 2347 6044;6045;6046;6047;6048 9421;9422;9423;9424;9425;9426;9427;9428;9429;9430;9431 9421 11 DSVVAGFQWATK LTDITKGVQYLNEIKDSVVAGFQWATKEGA EIKDSVVAGFQWATKEGALCEENMRGVRFD K D S T K E 2 0 0 1 0 1 0 1 0 0 0 1 0 1 0 1 1 1 0 2 0 0 12 0 1307.651 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 677 688 EEF2 Elongation factor 2 yes no 2 0.00072982 66.663 1 3.1369 3.5193 NaN 1 Median 3.1369 3.5193 NaN 1 0 Median NaN NaN NaN 0 0 Median 66568000 10533000 56035000 66568000 10533000 56035000 0 0 0 2285 1478 2348 6049 9432;9433 9433 2 DSWVDIFR SSLPAAFKHFALMQRDSWVDIFRLLFWGGS HFALMQRDSWVDIFRLLFWGGSYGGAGQPQ R D S F R L 0 1 0 2 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 8 0 1036.4978 CON__Q3ZBS7 CON__Q3ZBS7 315 322 yes yes 2 0.027685 60.682 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12434000 12434000 0 12434000 12434000 0 0 0 0 + 2286 1173 2349 6050 9434 9434 1 DSYGATSHLPNK ______________________________ GTRDSYGATSHLPNKGALAKVKNNFKDLMS R D S N K G 1 0 1 1 0 0 0 1 1 0 1 1 0 0 1 2 1 0 1 0 0 0 12 0 1288.6048 X6RER8;B0QZ72;B3KV88;A0A087X169;Q5T6S3 X6RER8 12 23 PHF19 PHD finger protein 19 yes no 2 0.00088014 84.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4252700 0 4252700 4252700 0 4252700 0 0 0 2287 448 2350 6051 9435 9435 1 DSYLILETLPTEYDSR DAEKLKPGDLVGVNKDSYLILETLPTEYDS SYLILETLPTEYDSRVKAMEVDERPTEQYS K D S S R V 0 1 0 2 0 0 2 0 0 1 3 0 0 0 1 2 2 0 2 0 0 0 16 0 1913.9258 E9PM69;R4GNH3;A0A140VK42;P17980;A8K781;E9PKD5;E9PMD8;E9PN50;E9PLG2 E9PM69 114 129 PSMC3 26S protease regulatory subunit 6A yes no 2 4.5101E-07 121.02 2 2 1.6196 1.4982 27.717 4 Median 1.9344 1.9528 8.5962 2 0 Median 1.4358 1.2177 0.434 2 0 Median 45299000 16194000 29105000 36197000 12482000 23715000 9101900 3711700 5390200 2288 617 2351 6052;6053;6054;6055 9436;9437;9438;9439;9440;9441;9442;9443 9439 8 DSYVGDEAQSKR GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL GQKDSYVGDEAQSKRGILTLKYPIEHGIVT K D S K R G 1 1 0 2 0 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 12 1 1353.6161 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q7Z7J6;A6NL76;B4DUI8;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;C9JUM1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B3KUD3;G5E9R0;E7EVS6;C9JTX5;C9JZR7;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;A1E282 P63261 51 62 ACTA2;ACTG2;ACTA1;ACTC1;ACTB;PS1TP5BP1;ACTG1 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 0.00095703 69.01 1 4.0184 3.3803 NaN 1 Median NaN NaN NaN 0 0 Median 4.0184 3.3803 NaN 1 0 Median 3259600 575610 2684000 0 0 0 3259600 575610 2684000 2289 1624;1656;1100 2352 6056 9444 9444 1 DTAEGVSQELISAGLVDGR KKELNDIRFEFTPGRDTAEGVSQELISAGL GVSQELISAGLVDGRDLVIVAANLQKIVEE R D T G R D 2 1 0 2 0 1 2 3 0 1 2 0 0 0 0 2 1 0 0 2 0 0 19 0 1915.9487 A0A024R2M7;O95747 A0A024R2M7 459 477 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 2.3358E-23 119.32 3 3.3253 3.3886 NaN 1 Median 3.3253 3.3886 NaN 1 0 Median NaN NaN NaN 0 0 Median 13618000 3378300 10239000 13618000 3378300 10239000 0 0 0 2290 117 2353 6057;6058;6059 9445;9446;9447 9446 3 DTCHELDELQLCK GADSEQADIARMLYKDTCHELDELQLCKNC YKDTCHELDELQLCKNCFYLSNARPDNWFC K D T C K N 0 0 0 2 2 1 2 0 1 0 3 1 0 0 0 0 1 0 0 0 0 0 13 0 1659.7233 Q15326;E7ENI9;J3QKD2;Q5BJG6;B7Z3W2;B7Z2J6;Q6PJR5 Q15326 247 259 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 2;3 8.1616E-05 52.576 3 1.7966 1.428 12.619 3 Median NaN NaN NaN 0 0 Median 1.7966 1.428 12.619 3 0 Median 9612300 3623400 5988900 0 0 0 9612300 3623400 5988900 2291 1758 2354 6060;6061;6062 9448;9449;9450 9450 3 DTDDVPMILVGNK FNDLQDLREQILRVKDTDDVPMILVGNKCD VKDTDDVPMILVGNKCDLEDERVVGKEQGQ K D T N K C 0 0 1 3 0 0 0 1 0 1 1 1 1 0 1 0 1 0 0 2 0 0 13 0 1415.6966 A0A024RB87;P61224;F5H6R7;F5H004;F5GX62;Q9BXV4;E7ESV4;F5H7Y6;A0A0J9YXB3;A6NIZ1;F5H823;B7ZB78;F5GZG1 A0A024RB87 105 117 RAP1B Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 2 0.00081024 69.915 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2292 329 2355 6063 9451 9451 250 1 DTDEADLVLAK ATDSCGDLMFLMKWKDTDEADLVLAKEANV MKWKDTDEADLVLAKEANVKCPQIVIAFYE K D T A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1188.5874 V9HWG0;P45973 V9HWG0 144 154 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 1.3165E-12 144.79 2 2 0.82504 0.75965 14.132 4 Median 0.75699 0.87013 7.7091 2 0 Median 0.86733 0.69036 2.0307 2 0 Median 442940000 249990000 192950000 408680000 231640000 177040000 34264000 18352000 15912000 2293 1568 2356 6064;6065;6066;6067 9452;9453;9454;9455;9456;9457;9458;9459 9454 8 DTDIVDEAIYYFK PIRSQFKGPAPRETKDTDIVDEAIYYFKAN TKDTDIVDEAIYYFKANVFFKNYEIKNEAD K D T F K A 1 0 0 3 0 0 1 0 0 2 0 1 0 1 0 0 1 0 2 1 0 0 13 0 1590.7454 F8VR50;C9JZD1;B4DM63;Q2LE71;B2R4D5;O15145 F8VR50 30 42 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 2 4.1308E-05 97.456 2 2.3502 2.347 4.1061 2 Median 2.3502 2.347 4.1061 2 0 Median NaN NaN NaN 0 0 Median 11271000 3444100 7826700 11271000 3444100 7826700 0 0 0 2294 826 2357 6068;6069 9460;9461;9462;9463 9463 4 DTEAGETFSSVQANLSK LAMLDEEPKTKKARKDTEAGETFSSVQANL EAGETFSSVQANLSKAEKHKYPHKVKTAQV K D T S K A 2 0 1 1 0 1 2 1 0 0 1 1 0 1 0 3 2 0 0 1 0 0 17 0 1782.8272 P35251;Q14756 P35251 244 260 RFC1;LLDBP Replication factor C subunit 1 yes no 2 2.2243E-18 134.68 2 2 0.56654 0.51132 11.967 4 Median 0.44764 0.46166 1.1013 2 0 Median 0.7021 0.56755 1.4104 2 0 Median 45576000 29709000 15867000 31962000 21430000 10532000 13614000 8279600 5334800 2295 1542 2358 6070;6071;6072;6073 9464;9465;9466;9467;9468;9469;9470;9471;9472;9473 9467 10 DTEEPLPVK DIHLDLPSNNNLVSKDTEEPLPVKESDQTL NNLVSKDTEEPLPVKESDQTLAALLSPKES K D T V K E 0 0 0 1 0 0 2 0 0 0 1 1 0 0 2 0 1 0 0 1 0 0 9 0 1026.5233 P18583;H7C1M2 P18583 1678 1686 SON Protein SON yes no 2 0.021743 55.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2296 1499 2359 6074 9474 9474 1 DTEPLIQTAK EHLDKISDSVLVDIKDTEPLIQTAKTTLGS LVDIKDTEPLIQTAKTTLGSKVVNSCHRQM K D T A K T 1 0 0 1 0 1 1 0 0 1 1 1 0 0 1 0 2 0 0 0 0 0 10 0 1114.587 B4DE30;E7ENZ3;B4DYC8;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;Q96GI1 B4DE30 86 95 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 2 8.4605E-06 99.802 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 776560 0 776560 0 0 0 776560 0 776560 2297 960 2360 6075;6076 9475;9476 9475 2 DTEQYEREDFLIK TVYGSNDQDPYVTLKDTEQYEREDFLIKPS LKDTEQYEREDFLIKPSDNLIVCGRAEQDQ K D T I K P 0 1 0 2 0 1 3 0 0 1 1 1 0 1 0 0 1 0 1 0 0 0 13 1 1684.7944 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DJV5;Q86X79;Q05BL3;Q6PKI5;Q6PIN4;F8VZ56 Q9BV37 134 146 PWP1 Periodic tryptophan protein 1 homolog yes no 3 0.0025309 55.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11023000 11023000 0 11023000 11023000 0 0 0 0 2298 339 2361 6077 9477 9477 1 DTFEHDPSESIDEFNK QEESPLKSKSQEEPKDTFEHDPSESIDEFN TFEHDPSESIDEFNKSSATSGDIWPGLSAY K D T N K S 0 0 1 3 0 0 3 0 1 1 0 1 0 2 1 2 1 0 0 0 0 0 16 0 1908.8014 Q9NYF8;Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 189 204 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2;3 6.3609E-07 98.105 2 1 1.0935 1.1822 14.442 3 Plateau 1.0764 1.114 10.201 2 0 Median 1.0935 0.89699 NaN 1 0 Median 34869000 15698000 19170000 29751000 13148000 16602000 5118200 2550100 2568100 2299 2083 2362 6078;6079;6080 9478;9479;9480;9481;9482 9479 5 DTFYDNFENEPILYGR ______________________________ TFYDNFENEPILYGRSYTWLCYEVKIKRGR R D T G R S 0 1 2 2 0 0 2 1 0 1 1 0 0 2 1 0 1 0 2 0 0 0 16 0 1991.8901 W0HJ78;B0QYD3;Q9UH17;Q6ICH2;B2CML4;Q96AK3 W0HJ78 15 30 APOBEC3B;bK150C2.9;APOBEC3DE;APOBEC3D DNA dC->dU-editing enzyme APOBEC-3B;DNA dC->dU-editing enzyme APOBEC-3D no no 2 2.0479E-09 111.52 1 2 0.76673 0.65147 23.942 3 Median 0.45211 0.46932 NaN 1 0 Median 0.82945 0.69808 9.7726 2 0 Median 25289000 15798000 9491600 13618000 9241400 4376800 11671000 6556200 5114800 2300 807;823 2363 6081;6082;6083 9483;9484;9485;9486;9487 9483 5 DTGIFLDLMHLK SAKASRARTKAGDLRDTGIFLDLMHLKKPG DLRDTGIFLDLMHLKKPGGFDISLFYRDII R D T L K K 0 0 0 2 0 0 0 1 1 1 3 1 1 1 0 0 1 0 0 0 0 0 12 0 1401.7326 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 195 206 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 1.2603E-20 141.95 5 2 0.4576 0.44462 71.031 2 Median 0.64889 0.73472 NaN 1 0 Median 0.3227 0.26907 NaN 1 0 Median 210570000 130030000 80541000 142440000 72673000 69771000 68128000 57357000 10771000 2301 82 2364;2365 6084;6085;6086;6087;6088;6089;6090 9488;9489;9490;9491;9492;9493;9494;9495;9496 9494 75 9 DTGNFVIGQILSDQSR KGLDIVRRDWCDLAKDTGNFVIGQILSDQS TGNFVIGQILSDQSRDTIVENIQKRLIEIG K D T S R D 0 1 1 2 0 2 0 2 0 2 1 0 0 1 0 2 1 0 0 1 0 0 16 0 1748.8693 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1089 1104 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 7.7547E-05 77.185 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5179900 0 5179900 5179900 0 5179900 0 0 0 2302 408 2366 6091;6092 9497;9498 9498 2 DTGNIFSEPVPLSEVPDYLDHIK FLILLRKTLEQLQEKDTGNIFSEPVPLSEV PVPLSEVPDYLDHIKKPMDFFTMKQNLEAY K D T I K K 0 0 1 3 0 0 2 1 1 2 2 1 0 1 3 2 1 0 1 2 0 0 23 0 2584.2697 P55201 P55201 648 670 BRPF1 Peregrin yes yes 3 3.6671E-08 54.626 2 0.87656 0.88082 0.79554 2 Median 0.87656 0.88082 0.79554 2 0 Median NaN NaN NaN 0 0 Median 25286000 13145000 12141000 25286000 13145000 12141000 0 0 0 2303 1616 2367 6093;6094 9499;9500;9501;9502;9503 9502 5 DTGVFEHTWK QLKSLTKLLIMKILRDTGVFEHTWKELELW MKILRDTGVFEHTWKELELWLEHLENTMEE R D T W K E 0 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 2 1 0 1 0 0 10 0 1218.5669 O60287 O60287 667 676 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.008747 59.153 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2304 1392 2368 6095 9504 9504 1 DTHDQLSEPSEVR HLPLEVAYQRGYLNKDTHDQLSEPSEVRSY NKDTHDQLSEPSEVRSYVDPSTDERLSYTQ K D T V R S 0 1 0 2 0 1 2 0 1 0 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1511.6852 Q15149;D3DWL0;Q96IE3 Q15149 3969 3981 PLEC;PLEC1 Plectin yes no 2;3 5.8059E-14 117.93 5 2 1.9104 1.978 9.7605 5 Median 1.8249 1.9934 9.4889 3 0 Plateau 2.4147 2.0842 7.3939 2 0 Median 109970000 30009000 79966000 101320000 27654000 73671000 8650300 2355200 6295200 2305 1754 2369 6096;6097;6098;6099;6100;6101;6102 9505;9506;9507;9508;9509;9510;9511;9512;9513;9514 9512 10 DTILAELLQIHK NSEKKKKRDTPMLPKDTILAELLQIHKEHI LPKDTILAELLQIHKEHIVGYHEHDSLLDH K D T H K E 1 0 0 1 0 1 1 0 1 2 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1392.7977 A4LAA3;P46100;B4DHH8;B4DLE1;B4DLW1 A4LAA3 2234 2245 ATRX Transcriptional regulator ATRX yes no 2 3.7124E-23 169.41 2 2 1.1081 1.0244 18.175 4 Median 0.86062 0.88449 5.8449 2 0 Median 1.4697 1.1956 6.94 2 0 Median 79878000 39431000 40447000 60535000 31732000 28803000 19343000 7699300 11643000 2306 672 2370 6103;6104;6105;6106 9515;9516;9517;9518;9519;9520 9515 6 DTLFCYHK GCPLPEACELYYVNRDTLFCYHKASEVFLQ ELYYVNRDTLFCYHKASEVFLQRLMALYVA R D T H K A 0 0 0 1 1 0 0 0 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 1082.4855 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 513 520 NAT10 N-acetyltransferase 10 no no 2 0.0071702 84.097 2 1 0.8989 1.0193 14.847 3 Median 0.84931 0.95015 9.9406 2 0 Median 1.5045 1.1917 NaN 1 0 Median 213900000 113450000 100450000 195340000 105780000 89566000 18564000 7678400 10885000 2307 2023;1687 2371 6107;6108;6109 9521;9522;9523;9524 9522 4 DTLGLFLR TGKTARAIRDMCLEKDTLGLFLREGSASTE RDMCLEKDTLGLFLREGSASTEVLRTEAEQ K D T L R E 0 1 0 1 0 0 0 1 0 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 933.52837 O75643;A4FU77;Q9H8B9 O75643 746 753 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0088507 76.847 2 0.94474 0.99332 2.8692 2 Median 0.94474 0.99332 2.8692 2 0 Median NaN NaN NaN 0 0 Median 53240000 28287000 24953000 53240000 28287000 24953000 0 0 0 2308 1411 2372 6110;6111 9525;9526;9527 9527 3 DTLLSPDSSFEYVPPK LTLLQVASRQKHLPKDTLLSPDSSFEYVPP TLLSPDSSFEYVPPKPKPSRVKEKFLEQSM K D T P K P 0 0 0 2 0 0 1 0 0 0 2 1 0 1 3 3 1 0 1 1 0 0 16 0 1793.8723 Q59HG1;O95239;B3KNC0 Q59HG1 1012 1027 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.011597 46.352 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4999900 0 4999900 4999900 0 4999900 0 0 0 2309 1803 2373 6112 9528 9528 1 DTLVADNLDQATR VKDEKIRQAFYFALRDTLVADNLDQATRVA LRDTLVADNLDQATRVAYQKDRRWRVVTLQ R D T T R V 2 1 1 3 0 1 0 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 13 0 1430.7001 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 714 726 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 4.3323E-07 140.09 2 2 1.2025 1.2226 21.699 4 Median 0.86301 1.0141 3.6131 2 0 Median 1.6946 1.4719 3.4247 2 0 Median 1096000000 574180000 521780000 899460000 500610000 398850000 196500000 73565000 122940000 2310 2070 2374 6113;6114;6115;6116 9529;9530;9531;9532;9533;9534;9535;9536;9537;9538;9539 9530 11 DTLYEAVR ______________________________ MSSKVSRDTLYEAVREVLHGNQRKRRKFLE R D T V R E 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 8 0 965.48181 P62906 P62906 8 15 RPL10A 60S ribosomal protein L10a yes yes 2 5.1851E-09 157.99 2 2 0.9938 1.0079 14.513 4 Median 0.96038 1.1307 0.21188 2 0 Median 1.0316 0.88094 3.0018 2 0 Median 1148600000 562300000 586330000 1097100000 537010000 560070000 51549000 25284000 26265000 2311 1651 2375 6117;6118;6119;6120 9540;9541;9542;9543;9544;9545;9546;9547 9541 8 DTMSDLPEVR ITRLSSGPFRTITVRDTMSDLPEVRNGASA TITVRDTMSDLPEVRNGASALEISYNGEPQ R D T V R N 0 1 0 2 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 10 0 1161.5336 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0;K7ENW7 A0A024R7E3 1431 1440 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.00010387 93.598 1 0.76564 0.76978 NaN 1 Median 0.76564 0.76978 NaN 1 0 Median NaN NaN NaN 0 0 Median 19257000 10722000 8535800 19257000 10722000 8535800 0 0 0 2312 222 2376 6121 9548 9548 164 1 DTNGENIAESLVAEGLATR KTPQGREYGMIYLGKDTNGENIAESLVAEG ENIAESLVAEGLATRREGMRANNPEQNRLS K D T T R R 3 1 2 1 0 0 3 2 0 1 2 0 0 0 0 1 2 0 0 1 0 0 19 0 1958.9545 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;I6TRR8 A0A140VK49 117 135 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 3.4875E-06 83.692 2 1 1.505 1.649 53.758 3 Plateau 1.5191 1.6059 3.7437 2 0 Median 0.73961 0.63363 NaN 1 0 Median 64253000 26577000 37676000 58171000 23137000 35033000 6082500 3439900 2642700 2313 618 2377 6122;6123;6124 9549;9550;9551;9552;9553;9554 9550 6 DTPDEPWAFPAR GNLARRAAATQPDAKDTPDEPWAFPAREFL DAKDTPDEPWAFPAREFLRKKLIGKEVCFT K D T A R E 2 1 0 2 0 0 1 0 0 0 0 0 0 1 3 0 1 1 0 0 0 0 12 0 1400.6361 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8 A0A140VK49 72 83 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.00021365 81.525 2 1.3432 1.3944 10.409 2 Median 1.3432 1.3944 10.409 2 0 Median NaN NaN NaN 0 0 Median 43534000 18858000 24676000 43534000 18858000 24676000 0 0 0 2314 618 2378 6125;6126 9555;9556;9557;9558 9555 4 DTPEGLQWVQLSAEEIPSR SFSPRMPVGDFFEERDTPEGLQWVQLSAEE GLQWVQLSAEEIPSRIQAITGKRGRPRNTE R D T S R I 1 1 0 1 0 2 3 1 0 1 2 0 0 0 2 2 1 1 0 1 0 0 19 0 2154.0593 J3QK86;J3KPG5;F8VU39;Q9UIF9 J3QK86 594 612 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 3.9793E-05 50.806 2 2.1064 1.7861 2.2141 2 Median NaN NaN NaN 0 0 Median 2.1064 1.7861 2.2141 2 0 Median 9132200 2732100 6400100 0 0 0 9132200 2732100 6400100 2315 1260 2379 6127;6128 9559;9560 9560 2 DTPITHISFHPK RTVQKQGFHHLWLQRDTPITHISFHPKRPM LQRDTPITHISFHPKRPMHILLHDAYMFCI R D T P K R 0 0 0 1 0 0 0 0 2 2 0 1 0 1 2 1 2 0 0 0 0 0 12 0 1391.7197 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4;A0A0J9YWK2 Q969X6 580 591 CIRH1A Cirhin yes no 3 0.00020255 64.55 2 2 1.1309 1.0438 7.1837 4 Median 0.91018 0.97371 4.4941 2 0 Median 1.3608 1.0929 1.1622 2 0 Median 83364000 42373000 40991000 72648000 38213000 34435000 10716000 4160200 6555700 2316 1955 2380 6129;6130;6131;6132 9561;9562;9563;9564;9565;9566;9567 9563 7 DTPLYTDNTANGIALLWAPR DEEFELPEFVEPFLKDTPLYTDNTANGIAL TDNTANGIALLWAPRPFNLRSGRTRRALDI K D T P R P 3 1 2 2 0 0 0 1 0 1 3 0 0 0 2 0 3 1 1 0 0 0 20 0 2201.1117 Q6P2Q9;I3L0J9 Q6P2Q9 390 409 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 2.1974E-06 68.809 1 0.44712 0.44836 NaN 1 Median 0.44712 0.44836 NaN 1 0 Median NaN NaN NaN 0 0 Median 9102600 6302300 2800400 9102600 6302300 2800400 0 0 0 2317 1854 2381 6133 9568;9569;9570 9569 3 DTQSVSAIGEEK RTVAVDWAVAKDKYKDTQSVSAIGEEKSHE KYKDTQSVSAIGEEKSHESKHQESVKKKGR K D T E K S 1 0 0 1 0 1 2 1 0 1 0 1 0 0 0 2 1 0 0 1 0 0 12 0 1262.599 A0A024R753;Q9NW13;B4DJ90;C9JAA9;H7C5G8 A0A024R753 197 208 RBM28 RNA-binding protein 28 yes no 2 1.4823E-22 153.12 2 2 1.0426 0.94796 8.0817 4 Median 0.91413 0.93125 7.5842 2 0 Median 1.2194 0.98424 10.382 2 0 Median 65882000 35519000 30363000 51930000 29582000 22348000 13952000 5936700 8015600 2318 214 2382 6134;6135;6136;6137 9571;9572;9573;9574;9575;9576;9577;9578;9579;9580 9575 10 DTQTSITDSCAVYR GKTLLFVRLLTGLYRDTQTSITDSCAVYRV RDTQTSITDSCAVYRVNNNRGNSLTLIDLP R D T Y R V 1 1 0 2 1 1 0 0 0 1 0 0 0 0 0 2 3 0 1 1 0 0 14 0 1615.7148 Q549N5;Q9Y5M8 Q549N5 91 104 SRPRB Signal recognition particle receptor subunit beta yes no 2 4.2743E-42 160.67 2 2 1.0239 0.88676 0.39715 2 Median NaN NaN NaN 0 0 Median 1.0239 0.88676 0.39715 2 0 Median 8656400 1710400 6946000 5024700 0 5024700 3631700 1710400 1921300 2319 1794 2383 6138;6139;6140;6141 9581;9582;9583;9584 9582 4 DTSASAVAVGLK KMQLLEIITTEKTSKDTSASAVAVGLKQGK TSKDTSASAVAVGLKQGKVIIVVKDGPGFY K D T L K Q 3 0 0 1 0 0 0 1 0 0 1 1 0 0 0 2 1 0 0 2 0 0 12 0 1117.5979 E9KL44;P40939;B4DRH6;B4DDZ5;H0YFD6 E9KL44 520 531 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 9.8015E-06 108.15 2 2 0.99649 0.89225 4.6055 4 Median 0.82421 0.85897 3.1252 2 0 Median 1.1576 0.92112 2.2527 2 0 Median 73348000 35753000 37594000 67364000 32904000 34459000 5983800 2849100 3134700 2320 1228 2384 6142;6143;6144;6145 9585;9586;9587;9588;9589 9587 5 DTSATTALELVAGER RNCVKGLVASLISVKDTSATTALELVAGER DTSATTALELVAGERLYNVVVDTEVTGKKL K D T E R L 3 1 0 1 0 0 2 1 0 0 2 0 0 0 0 1 3 0 0 1 0 0 15 0 1532.7682 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 534 548 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 4.4304E-10 113.77 2 2 1.1861 1.1993 23.575 4 Median 0.83502 0.97786 1.369 2 0 Median 1.6915 1.4703 1.3169 2 0 Median 893810000 437760000 456050000 636940000 344640000 292300000 256880000 93122000 163750000 2321 69 2385 6146;6147;6148;6149 9590;9591;9592;9593;9594;9595;9596;9597;9598;9599;9600;9601 9600 12 DTSEDIEELVEPVAAHGPK QPFKPLSIGGIIILKDTSEDIEELVEPVAA DIEELVEPVAAHGPKIEEEEQEPEPPEPFE K D T P K I 2 0 0 2 0 0 4 1 1 1 1 1 0 0 2 1 1 0 0 2 0 0 19 0 2034.9746 B2R6D0;A0A087WW66;Q99460 B2R6D0 916 934 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 3 0.002562 28.14 2 2.7785 2.8853 NaN 1 Median 2.7785 2.8853 NaN 1 0 Median NaN NaN NaN 0 0 Median 17715000 3705800 14009000 17715000 3705800 14009000 0 0 0 2322 424 2386 6150;6151 9602;9603 9603 2 DTSFLGSDDIGNIDVR QSALYDALFSSQSPKDTSFLGSDDIGNIDV TSFLGSDDIGNIDVREPELEDLTRYDVGAI K D T V R E 0 1 1 4 0 0 0 2 0 2 1 0 0 1 0 2 1 0 0 1 0 0 16 0 1722.8061 P49792;D3DX73 P49792 397 412 RANBP2;hCG_1994636 E3 SUMO-protein ligase RanBP2 yes no 2 4.1894E-05 84.289 2 1.2093 1.2333 9.6187 2 Median 1.2093 1.2333 9.6187 2 0 Median NaN NaN NaN 0 0 Median 21321000 8972600 12349000 21321000 8972600 12349000 0 0 0 2323 1588 2387 6152;6153 9604;9605;9606;9607 9604 4 DTSSDPLLELR CVDSGILRVWHDKDKDTSSDPLLELRVGPG DKDKDTSSDPLLELRVGPGVCRMRQDPAHP K D T L R V 0 1 0 2 0 0 1 0 0 0 3 0 0 0 1 2 1 0 0 0 0 0 11 0 1244.6248 Q6RFH5;E9PS41;B4E018 Q6RFH5 118 128 WDR74 WD repeat-containing protein 74 yes no 2 2.9761E-08 120.68 2 2 1.1772 0.96254 4.165 3 Median 0.85544 0.948 NaN 1 0 Median 1.204 0.9935 4.4771 2 0 Median 96521000 46749000 49773000 64729000 33106000 31623000 31793000 13642000 18150000 2324 1859 2388 6154;6155;6156;6157 9608;9609;9610;9611;9612;9613;9614 9609 7 DTSVEGSEMVPGK QVYSFGCNDEGALGRDTSVEGSEMVPGKVE GRDTSVEGSEMVPGKVELQEKVVQVSAGDS R D T G K V 0 0 0 1 0 0 2 2 0 0 0 1 1 0 1 2 1 0 0 2 0 0 13 0 1334.6024 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 102 114 RCC1 Regulator of chromosome condensation yes no 2 7.3487E-25 162.36 2 2 0.7096 0.65323 42.581 4 Median 0.86289 0.95661 5.4864 2 0 Median 0.57397 0.45856 1.5786 2 0 Median 123950000 66818000 57129000 115130000 61196000 53934000 8816700 5621500 3195300 2325 550 2389 6158;6159;6160;6161 9615;9616;9617;9618;9619;9620;9621;9622 9618 403 8 DTTEVPSSTVEK QECAERHIIDNFFVKDTTEVPSSTVEKSNQ FVKDTTEVPSSTVEKSNQVCTSCEDNAEAN K D T E K S 0 0 0 1 0 0 2 0 0 0 0 1 0 0 1 2 3 0 0 2 0 0 12 0 1291.6143 A0A024R784;O15164;B4DYZ9;Q6ZSA6 A0A024R784 147 158 TRIM24 Transcription intermediary factor 1-alpha yes no 2 0.0072615 60.754 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2326 217 2390 6162 9623 9623 1 DTTIMELR QERETFSSAEGTVDKDTTIMELRDRLPKKQ AEGTVDKDTTIMELRDRLPKKQQASASTDG K D T L R D 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 0 2 0 0 0 0 0 8 0 977.48518 A4LAA3;P46100;A0A096LNW1;A0A096LNL9;B7Z1D8 A4LAA3 898 905 ATRX Transcriptional regulator ATRX yes no 2 0.025751 42.599 1 2.1478 2.3488 NaN 1 Median 2.1478 2.3488 NaN 1 0 Median NaN NaN NaN 0 0 Median 34947000 11435000 23512000 34947000 11435000 23512000 0 0 0 2327 672 2391 6163 9624;9625 9625 520 2 DTVILPIK WSDIAGLDDVITDLKDTVILPIKKKHLFEN DVITDLKDTVILPIKKKHLFENSRLLQPPK K D T I K K 0 0 0 1 0 0 0 0 0 2 1 1 0 0 1 0 1 0 0 1 0 0 8 0 897.55352 Q8NBU5;B4E2J1 Q8NBU5 105 112 ATAD1 ATPase family AAA domain-containing protein 1 yes no 2 0.0064355 85.359 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13152000 0 13152000 13152000 0 13152000 0 0 0 2328 1920 2392 6164;6165;6166 9626;9627;9628;9629 9629 4 DTVTISGPQAPVFEFVEQLRK QRCPPGVVPACHNSKDTVTISGPQAPVFEF GPQAPVFEFVEQLRKEGVFAKEVRTGGMAF K D T R K E 1 1 0 1 0 2 2 1 0 1 1 1 0 2 2 1 2 0 0 3 0 0 21 1 2360.2376 A0A0U1RQF0;P49327 A0A0U1RQF0 647 667 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 3.9521E-07 49.528 1 1.9354 2.1649 NaN 1 Median 1.9354 2.1649 NaN 1 0 Median NaN NaN NaN 0 0 Median 11941000 3655800 8285200 11941000 3655800 8285200 0 0 0 2329 587 2393 6167 9630;9631 9630 2 DTWGVVSSGSSK SPVINYIVEKQDTRKDTWGVVSSGSSKTKL TRKDTWGVVSSGSSKTKLKIPHLQKGCEYV K D T S K T 0 0 0 1 0 0 0 2 0 0 0 1 0 0 0 4 1 1 0 2 0 0 12 0 1208.5673 C0JYZ2;D3DPG0;A0A0A0MTS7;Q8WZ42;D3DPF9;A0A0A0MRA3 C0JYZ2 17649 17660 TTN Titin yes no 2 0.0021406 59.35 3 0.87463 0.96342 6.706 2 Median 0.87463 0.96342 6.706 2 0 Median NaN NaN NaN 0 0 Median 129780000 64781000 65002000 129780000 64781000 65002000 0 0 0 2330 489 2394 6168;6169;6170 9632;9633;9634;9635 9634 4 DTYDTSIDSLEENLDK KLEGEDGDVKCLSEKDTYDTSIDSLEENLD TYDTSIDSLEENLDKKKKGKKFPEASDRCL K D T D K K 0 0 1 4 0 0 2 0 0 1 2 1 0 0 0 2 2 0 1 0 0 0 16 0 1856.8163 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 759 774 C10orf12 yes no 2 0.0035071 56.139 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1403600 0 1403600 0 0 0 1403600 0 1403600 2331 630 2395 6171 9636 9636 1 DTYEETGLQGHPSQFSGR VALLPNGKLILSLDKDTYEETGLQGHPSQF EETGLQGHPSQFSGRKIMKFIVSIDLMELS K D T G R K 0 1 0 1 0 2 2 3 1 0 1 0 0 1 1 2 2 0 1 0 0 0 18 0 2007.8922 X6RLL4;A0A087X1N3;O75818 X6RLL4 62 79 RPP40 Ribonuclease P protein subunit p40 yes no 2 0.0060578 48.177 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2332 449 2396 6172 9637 9637 1 DTYLDTQVVGQTGVIR NSSDWVTTDIQVKVRDTYLDTQVVGQTGVI TYLDTQVVGQTGVIRSVTGGMCSVYLKDSE R D T I R S 0 1 0 2 0 2 0 2 0 1 1 0 0 0 0 0 3 0 1 3 0 0 16 0 1763.9054 B4E0Q4;B4DZJ7;O00267;B4DJK4 B4E0Q4 849 864 SUPT5H Transcription elongation factor SPT5 yes no 2 0.00091716 64.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2333 1056 2397 6173 9638 9638 1 DVACGANHTLVLDSQK TKDGQILPVPNVVVRDVACGANHTLVLDSQ VACGANHTLVLDSQKRVFSWGFGGYGRLGH R D V Q K R 2 0 1 2 1 1 0 1 1 0 2 1 0 0 0 1 1 0 0 2 0 0 16 0 1726.8308 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 269 284 RCC2 Protein RCC2 yes no 2 0.00094414 71.548 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2334 301 2398 6174;6175 9639;9640 9640 2 DVAEEIANYRPTLDTLHEQASALPQEHAESPDVR GHDEYSTQSLVKKHKDVAEEIANYRPTLDT ASALPQEHAESPDVRGRLSGIEERYKEVAE K D V V R G 5 2 1 3 0 2 5 0 2 1 3 0 0 0 3 2 2 0 1 2 0 0 34 1 3800.8242 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 702 735 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 4 1.7809E-07 42.865 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3910900 0 3910900 0 0 0 3910900 0 3910900 2335 415 2399 6176 9641 9641 1 DVAENAGLFIDFVQR LTPHARRAVAHTLPKDVAENAGLFIDFVQR DVAENAGLFIDFVQRQIHNQDLPLSMIVAI K D V Q R Q 2 1 1 2 0 1 1 1 0 1 1 0 0 2 0 0 0 0 0 2 0 0 15 0 1692.8471 Q7Z3K3;B4DSK8 Q7Z3K3 1096 1110 POGZ Pogo transposable element with ZNF domain yes no 2 0.00022422 90.614 2 0.58977 0.59804 18.221 2 Median 0.58977 0.59804 18.221 2 0 Median NaN NaN NaN 0 0 Median 17304000 10656000 6648300 17304000 10656000 6648300 0 0 0 2336 1874 2400 6177;6178 9642;9643;9644;9645 9645 4 DVAEVDTVRR RELYQQLQRGERSVRDVAEVDTVRRALRGA ERSVRDVAEVDTVRRALRGANVIAGVWLEE R D V R R A 1 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 10 1 1158.5993 Q15149;D3DWL0 Q15149 3146 3155 PLEC;PLEC1 Plectin yes no 2 3.7735E-09 128.36 2 2.1039 2.3443 22.05 2 Median 2.1039 2.3443 22.05 2 0 Median NaN NaN NaN 0 0 Median 78486000 27021000 51465000 78486000 27021000 51465000 0 0 0 2337 1754 2401 6179;6180 9646;9647 9647 2 DVASEVNLTAYK LRFIPDDITFDDEPKDVASEVNLTAYKPKY EPKDVASEVNLTAYKPKYFTSAAMGTSTVE K D V Y K P 2 0 1 1 0 0 1 0 0 0 1 1 0 0 0 1 1 0 1 2 0 0 12 0 1308.6561 Q9H501;A0JLU5;Q05C10;A0A087WX71 Q9H501 482 493 ESF1 ESF1 homolog yes no 2 0.010076 57.019 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2338 2033 2402 6181 9648 9648 1 DVASEVNLTAYKPK LRFIPDDITFDDEPKDVASEVNLTAYKPKY KDVASEVNLTAYKPKYFTSAAMGTSTVEIT K D V P K Y 2 0 1 1 0 0 1 0 0 0 1 2 0 0 1 1 1 0 1 2 0 0 14 1 1533.8039 Q9H501;A0JLU5;Q05C10;A0A087WX71 Q9H501 482 495 ESF1 ESF1 homolog yes no 2 0.0324 42.802 1 2.2171 1.8797 NaN 1 Median NaN NaN NaN 0 0 Median 2.2171 1.8797 NaN 1 0 Median 6334000 1735600 4598400 0 0 0 6334000 1735600 4598400 2339 2033 2403 6182 9649 9649 1 DVAVMQLR VKDRFLRQLDFNSSKDVAVMQLRSGSKFPV LDFNSSKDVAVMQLRSGSKFPVFNMSYNPA K D V L R S 1 1 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 2 0 0 8 0 930.49569 P53621 P53621 351 358 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.030542 49.358 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2340 1607 2404 6183 9650 9650 1395 1 DVAYQYVK KTTWHRISVFRPGLRDVAYQYVKKRSRIYL VFRPGLRDVAYQYVKKRSRIYLEGKIDYGE R D V V K K 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 2 2 0 0 8 0 984.49165 Q567R6;A4D1U3;Q04837;A0A0G2JLD8;E7EUY5;B7Z268;C9K0U8 Q567R6 96 103 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 0.0065286 86.866 1 1 0.75331 0.72124 36.348 2 Median 0.83431 0.93261 NaN 1 0 Median 0.68018 0.55777 NaN 1 0 Median 106380000 60381000 45996000 101290000 57205000 44088000 5084900 3176100 1908800 2341 666 2405 6184;6185 9651;9652;9653;9654 9652 4 DVCSHFDLNK SLMTAMVTQGPEAARDVCSHFDLNKKTLYT PEAARDVCSHFDLNKKTLYTLVTKRDSKGV R D V N K K 0 0 1 2 1 0 0 0 1 0 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1233.5448 O60287 O60287 167 176 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 7.3668E-06 107.21 1 1.265 1.2788 NaN 1 Median 1.265 1.2788 NaN 1 0 Median NaN NaN NaN 0 0 Median 16394000 7895700 8498000 16394000 7895700 8498000 0 0 0 2342 1392 2406 6186 9655 9655 1 DVDEAYMNK NKRTEMENEFVLIKKDVDEAYMNKVELESR FVLIKKDVDEAYMNKVELESRLEGLTDEIN K D V N K V 1 0 1 2 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 9 0 1083.4543 CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8W1U3;F8VP67;CON__Q9H552 CON__P05787 199 207 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.0074668 61.962 1 1 1.3105 1.1786 66.625 2 Median 0.72752 0.73583 NaN 1 0 Median 2.3606 1.8879 NaN 1 0 Median 11344000 4821800 6522300 8913800 4071500 4842300 2430300 750380 1679900 + 2343 1156 2407 6187;6188 9656;9657 9656 2 DVDFEGTDEPIFGK GKLQSESTNNGKNKRDVDFEGTDEPIFGKK RDVDFEGTDEPIFGKKPRIEESITEDLSLA R D V G K K 0 0 0 3 0 0 2 2 0 1 0 1 0 2 1 0 1 0 0 1 0 0 14 0 1567.7042 P42285;A8K6I4;H0Y8U3 P42285 65 78 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 4.5577E-15 136.48 2 2 1.0851 1.0114 12.61 4 Median 1.0248 1.1154 2.5621 2 0 Median 1.1271 0.90273 4.7911 2 0 Median 93098000 49455000 43643000 76028000 41906000 34123000 17070000 7549500 9520500 2344 1563 2408 6189;6190;6191;6192 9658;9659;9660;9661 9658 4 DVDFMYVELIQR GYGLFAGPCKVINAKDVDFMYVELIQRCKQ NAKDVDFMYVELIQRCKQMFLTQTDTGDDR K D V Q R C 0 1 0 2 0 1 1 0 0 1 1 0 1 1 0 0 0 0 1 2 0 0 12 0 1526.7439 P78527;B4DL41 P78527 380 391 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 5.077E-06 107.83 2 1 0.8327 0.84001 91.443 3 Median 0.8791 0.87707 6.1052 2 0 Median 0.21563 0.18028 NaN 1 0 Median 32062000 17688000 14374000 28462000 14766000 13696000 3600800 2922300 678560 2345 1665 2409 6193;6194;6195 9662;9663;9664;9665;9666 9665 1445 5 DVDGAYMTK NKRTNAENEFVTIKKDVDGAYMTKVDLQAK FVTIKKDVDGAYMTKVDLQAKLDNLQQEID K D V T K V 1 0 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 0 9 0 998.4379 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 290 298 KRT1 Keratin, type II cytoskeletal 1 no no 2 0.021651 57.59 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24555000 24555000 0 14237000 14237000 0 10318000 10318000 0 + 2346 1308;1309 2410 6196;6197 9667;9668 9668 2 DVDGLTSINAGR SINTEEVINAIAPEKDVDGLTSINAGRLAR PEKDVDGLTSINAGRLARGDLNDCFIPCTP K D V G R L 1 1 1 2 0 0 0 2 0 1 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1216.6048 A0A024R652;P11586 A0A024R652 123 134 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00023557 83.438 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2347 196 2411 6198;6199 9669;9670 9670 2 DVDGVTDINLGK NLFSNKVLNALKPEKDVDGVTDINLGKLVR PEKDVDGVTDINLGKLVRGDAHECFVSPVA K D V G K L 0 0 1 3 0 0 0 2 0 1 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1244.6248 A0A087WVM4;B7ZM99;Q6UB35;H0Y327;Q5JYA8;Q5JYA3 A0A087WVM4 112 123 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.00022704 83.869 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2348 418 2412 6200 9671 9671 1 DVDIIDHHDNTYTVK LDVQFSGLTKGDAVRDVDIIDHHDNTYTVK DVDIIDHHDNTYTVKYTPVQQGPVGVNVTY R D V V K Y 0 0 1 4 0 0 0 0 2 2 0 1 0 0 0 0 2 0 1 2 0 0 15 0 1783.8377 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 922 936 FLNA Filamin-A yes no 3 0.00024034 50.155 1 1.4575 1.4978 NaN 1 Median 1.4575 1.4978 NaN 1 0 Median NaN NaN NaN 0 0 Median 11689000 4276300 7412500 11689000 4276300 7412500 0 0 0 2349 1504 2413 6201 9672;9673 9672 2 DVDLTLPGWGEWGGVGLKPSAK FLKEKREAVEASKPKDVDLTLPGWGEWGGV GWGEWGGVGLKPSAKKRRRFLIKAPEGPPR K D V A K K 1 0 0 2 0 0 1 5 0 0 3 2 0 0 2 1 1 2 0 2 0 0 22 1 2281.1743 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 623 644 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C no no 3 1.9303E-11 88.396 1 1 0.73214 0.71057 72.908 2 Median 0.38151 0.42434 NaN 1 0 Median 1.405 1.1899 NaN 1 0 Median 21905000 10614000 11292000 5728600 4005400 1723200 16177000 6608100 9568500 2350 2008;393 2414 6202;6203 9674;9675;9676 9675 3 DVDNAYMIK NKRTAAENDFVTLKKDVDNAYMIKVELQSK FVTLKKDVDNAYMIKVELQSKVDLLNQEIE K D V I K V 1 0 1 2 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 0 9 0 1067.4957 CON__P35908;P35908 CON__P35908 294 302 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 0.019767 48.794 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 2351 1166 2415 6204 9677 9677 885 1 DVDTIFECK CFRSGTKQLKHILLKDVDTIFECKLCRSLF KHILLKDVDTIFECKLCRSLFRGLPNLITH K D V C K L 0 0 0 2 1 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 9 0 1125.5012 Q2TB10;A0A087WXB4;C9JHX9;C9K0M9;C9JLY3 Q2TB10 64 72 ZNF800 Zinc finger protein 800 yes no 2 0.0028526 80.165 2 2 1.8946 1.582 5.1745 2 Median NaN NaN NaN 0 0 Median 1.8946 1.582 5.1745 2 0 Median 3969700 1407400 2562300 0 0 0 3969700 1407400 2562300 2352 1777 2416 6205;6206;6207;6208 9678;9679;9680;9681;9682 9678 5 DVDTQEFNLEK HNKNTKQANPSVLERDVDTQEFNLEKARLE VLERDVDTQEFNLEKARLEVHRFGITGYGK R D V E K A 0 0 1 2 0 1 2 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1336.6147 Q8NDD1;Q5TBH9;B4E0F7 Q8NDD1 160 170 C1orf131 Uncharacterized protein C1orf131 yes no 2 2.8124E-31 185.14 2 2 1.2425 1.1659 12.328 4 Median 1.1661 1.3113 4.5153 2 0 Median 1.3153 1.0644 0.77035 2 0 Median 147400000 65537000 81864000 126730000 56454000 70274000 20673000 9082400 11590000 2353 1925 2417 6209;6210;6211;6212 9683;9684;9685;9686;9687;9688;9689 9685 7 DVDTYYLSNLVK GLSIIPARFTRVLPRDVDTYYLSNLVKWFI LPRDVDTYYLSNLVKWFIGTFTVNAELSAS R D V V K W 0 0 1 2 0 0 0 0 0 0 2 1 0 0 0 1 1 0 2 2 0 0 12 0 1428.7137 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPI9;D2CPJ0 A0A024R2M8 248 259 XPC DNA repair protein complementing XP-C cells yes no 2 0.00019323 82.417 1 2 0.91816 0.72353 11.063 3 Median 0.58577 0.63183 NaN 1 0 Median 0.94979 0.75445 5.919 2 0 Median 73591000 39103000 34488000 34343000 20122000 14221000 39248000 18981000 20267000 2354 118 2418 6213;6214;6215 9690;9691;9692;9693;9694 9691 4 DVDVVCVDMSIEQK VDKENINNTPKHFRKDVDVVCVDMSIEQKL KDVDVVCVDMSIEQKLPRKPKTDKFQVLAK K D V Q K L 0 0 0 3 1 1 1 0 0 1 0 1 1 0 0 1 0 0 0 4 0 0 14 0 1635.7484 B4DZG2;A0A024R8C1;Q15361 B4DZG2 122 135 TTF1 Transcription termination factor 1 yes no 2 0.0031413 42.001 1 1.2374 1.2575 NaN 1 Median 1.2374 1.2575 NaN 1 0 Median NaN NaN NaN 0 0 Median 6345500 2528600 3816900 6345500 2528600 3816900 0 0 0 2355 247 2419 6216 9695 9695 185 1 DVDYSDALTEK EEEEKIFGRGSRQRRDVDYSDALTEKQWLR RQRRDVDYSDALTEKQWLRAIEDGNLEEME R D V E K Q 1 0 0 3 0 0 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 11 0 1254.5616 P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8;A0A0U1RRG6 P51531 1313 1323 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.021612 52.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2356 1595 2420 6217 9696 9696 1 DVEDFLSPLLGK TVIRKVEGDIWALQKDVEDFLSPLLGKTPV LQKDVEDFLSPLLGKTPVTQVNEVTGTLRI K D V G K T 0 0 0 2 0 0 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 12 0 1331.6973 H0YDP7;Q59GE9;A0A024R578;Q13405 H0YDP7 84 95 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 5.5319E-06 110.14 2 1.0355 1.047 0.13738 2 Median 1.0355 1.047 0.13738 2 0 Median NaN NaN NaN 0 0 Median 14486000 7576600 6909500 14486000 7576600 6909500 0 0 0 2357 173 2421 6218;6219 9697;9698;9699;9700 9699 4 DVEDVPITVE LSPEIRRELQSAVPRDVEDVPITVE_____ SAVPRDVEDVPITVE_______________ R D V V E - 0 0 0 2 0 0 2 0 0 1 0 0 0 0 1 0 1 0 0 3 0 0 10 0 1114.5394 Q13895 Q13895 428 437 BYSL Bystin yes yes 1 0.013608 65.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6328000 0 0 6328000 0 0 0 0 0 2358 1724 2422 6220 9701 9701 1 DVEFEVVGDAPEK YTLLINILHSEDLGKDVEFEVVGDAPEKVG GKDVEFEVVGDAPEKVGPKQAEDAAKSITN K D V E K V 1 0 0 2 0 0 3 1 0 0 0 1 0 1 1 0 0 0 0 3 0 0 13 0 1432.6722 B3KMZ6;B2RDF5;Q9UBT2;U3KQ93;B3KNA3 B3KMZ6 541 553 UBA2 SUMO-activating enzyme subunit 2 yes no 2 6.9036E-09 109.24 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6637200 0 6637200 6637200 0 6637200 0 0 0 2359 887 2423 6221;6222 9702;9703;9704 9702 3 DVEGSTSPQIGDK YDDCGVKLTIAFQAKDVEGSTSPQIGDKVE AKDVEGSTSPQIGDKVEFSISDKQRPGQQV K D V D K V 0 0 0 2 0 1 1 2 0 1 0 1 0 0 1 2 1 0 0 1 0 0 13 0 1331.6205 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 445 457 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 0.00012689 78.653 1 2.9482 3.1815 NaN 1 Median 2.9482 3.1815 NaN 1 0 Median NaN NaN NaN 0 0 Median 34578000 9884800 24693000 34578000 9884800 24693000 0 0 0 2360 42 2424 6223 9705;9706;9707 9707 3 DVEGSTSPQIGDKVEFSISDK YDDCGVKLTIAFQAKDVEGSTSPQIGDKVE SPQIGDKVEFSISDKQRPGQQVATCVRLLG K D V D K Q 0 0 0 3 0 1 2 2 0 2 0 2 0 1 1 4 1 0 0 2 0 0 21 1 2237.0699 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 445 465 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 3 0.0016491 29.84 1 1.9849 1.7742 NaN 1 Median NaN NaN NaN 0 0 Median 1.9849 1.7742 NaN 1 0 Median 1946500 738500 1208000 0 0 0 1946500 738500 1208000 2361 42 2425 6224 9708 9708 1 DVESYIHR DIPEVDLVIQSSPPKDVESYIHRSGRTGRA IQSSPPKDVESYIHRSGRTGRAGRTGVCIC K D V H R S 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 8 0 1017.488 Q9NR30 Q9NR30 517 524 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.0021178 102.71 2 2 1.0328 1.0051 8.1456 4 Median 0.93775 1.0921 4.8327 2 0 Median 1.1043 0.95651 0.10869 2 0 Median 630780000 335170000 295610000 535750000 289490000 246260000 95023000 45671000 49352000 2362 2065 2426 6225;6226;6227;6228 9709;9710;9711;9712;9713;9714;9715;9716 9710 8 DVFASEVTPSDLQK LTTNVTEQTEKDGDKDVFASEVTPSDLQKQ KDVFASEVTPSDLQKQMGNLEDAETKDLLV K D V Q K Q 1 0 0 2 0 1 1 0 0 0 1 1 0 1 1 2 1 0 0 2 0 0 14 0 1534.7515 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1362 1375 AHCTF1 Protein ELYS yes no 2 5.6346E-70 208.56 2 2 1.9779 1.8749 11.738 4 Median 1.5348 1.6941 2.7123 2 0 Median 2.5835 2.0694 2.3274 2 0 Median 156300000 52037000 104260000 113710000 40639000 73075000 42585000 11398000 31187000 2363 1945 2427 6229;6230;6231;6232 9717;9718;9719;9720;9721;9722;9723;9724;9725 9718 9 DVFERPSAK AQNTKFFKQKAAGVRDVFERPSAKKRKTT_ KAAGVRDVFERPSAKKRKTT__________ R D V A K K 1 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 9 1 1047.5349 P55081 P55081 426 434 MFAP1 Microfibrillar-associated protein 1 yes yes 2 0.006505 88.495 1 0.95337 1.0858 NaN 1 Median 0.95337 1.0858 NaN 1 0 Median NaN NaN NaN 0 0 Median 19434000 7861700 11572000 19434000 7861700 11572000 0 0 0 2364 1614 2428 6233 9726 9726 1 DVFRDPALK RYSVDIPLDKTVVNKDVFRDPALKRKLKKK KTVVNKDVFRDPALKRKLKKKSAYGLSLKN K D V L K R 1 1 0 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 9 1 1059.5713 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7;K7EQQ9;Q6LCU2 E4W6B6 99 107 RPL27 60S ribosomal protein L27 yes no 2 3.0062E-05 132.01 2 2 0.84658 0.87409 24.871 4 Median 0.88596 1.07 3.3366 2 0 Median 0.80223 0.69958 6.2301 2 0 Median 1921700000 1056800000 864900000 1791400000 984860000 806520000 130340000 71958000 58380000 2365 93 2429 6234;6235;6236;6237 9727;9728;9729;9730;9731 9729 5 DVGNLLR NTSVYHISGKKKTFKDVGNLLRSHGIDLDH SGKKKTFKDVGNLLRSHGIDLDHNRFLILQ K D V L R S 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 785.43955 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 208 214 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.027013 85.306 1 0.93319 1.0639 NaN 1 Median 0.93319 1.0639 NaN 1 0 Median NaN NaN NaN 0 0 Median 137660000 71552000 66104000 137660000 71552000 66104000 0 0 0 2366 2070 2430 6238 9732 9732 1 DVGSLASVQR QDLYERLEHGQATAKDVGSLASVQRYLQGT QATAKDVGSLASVQRYLQGTGCIAGLLLPG K D V Q R Y 1 1 0 1 0 1 0 1 0 0 1 0 0 0 0 2 0 0 0 2 0 0 10 0 1030.5407 A0A075B730;A0A087X1U6 A0A075B730 570 579 EPPK1 yes no 2 0.0068687 66.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22129000 0 22129000 22129000 0 22129000 0 0 0 2367 397 2431 6239 9733 9733 1 DVHTLLDR DHLERVLEAAAQAARDVHTLLDRVVRQHVR AAAQAARDVHTLLDRVVRQHVREASILLGD R D V D R V 0 1 0 2 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 967.50869 Q9NPD3;E9PI41 Q9NPD3 223 230 EXOSC4 Exosome complex component RRP41 yes no 2 0.01413 70.919 1 1 0.99678 0.84562 NaN 1 Median NaN NaN NaN 0 0 Median 0.99678 0.84562 NaN 1 0 Median 22669000 20993000 1676400 19586000 19586000 0 3083100 1406600 1676400 2368 2056 2432 6240;6241 9734;9735 9734 2 DVIDEPIIEEPSR PEVPREDQQQQHQQRDVIDEPIIEEPSRLQ QRDVIDEPIIEEPSRLQESVMEASRTNIDE R D V S R L 0 1 0 2 0 0 3 0 0 3 0 0 0 0 2 1 0 0 0 1 0 0 13 0 1510.7515 A0A024R9J0;O60216 A0A024R9J0 438 450 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 3.5616E-09 113.63 3 1 0.90482 0.85603 37.163 2 Median 0.65031 0.65821 NaN 1 0 Median 1.2589 1.1133 NaN 1 0 Median 33633000 25753000 7880500 29637000 23540000 6097200 3996500 2213200 1783300 2369 280 2433 6242;6243;6244;6245 9736;9737;9738;9739;9740;9741;9742 9739 7 DVIEEHGPSEK LPRETLAKNKKEMAKDVIEEHGPSEKAING EMAKDVIEEHGPSEKAINGPTSASGDDISK K D V E K A 0 0 0 1 0 0 3 1 1 1 0 1 0 0 1 1 0 0 0 1 0 0 11 0 1238.5779 A0A0F7KYT8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;H7C4S4 A0A0F7KYT8 624 634 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.0073354 52.79 2 2.0156 1.7321 7.8882 2 Median NaN NaN NaN 0 0 Median 2.0156 1.7321 7.8882 2 0 Median 3230700 1136000 2094800 0 0 0 3230700 1136000 2094800 2370 531 2434 6246;6247 9743;9744 9744 2 DVIEEYFK SCVVVKDYGKESQAKDVIEEYFKCKK____ GKESQAKDVIEEYFKCKK____________ K D V F K C 0 0 0 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1041.5019 P25398 P25398 122 129 RPS12 40S ribosomal protein S12 yes yes 2 0.0015831 102.72 2 1 1.4933 1.7101 19.385 3 Plateau 1.4992 1.7038 0.52054 2 0 Median 1.4925 1.2179 NaN 1 0 Median 282900000 106350000 176560000 274970000 103100000 171870000 7934600 3248000 4686600 2371 1515 2435 6248;6249;6250 9745;9746;9747;9748;9749;9750;9751;9752;9753 9747 9 DVIGFNMAGLDYLK EKLRETTISKVSQVRDVIGFNMAGLDYLKR RDVIGFNMAGLDYLKRECEAKSEVMFFADA R D V L K R 1 0 1 2 0 0 0 2 0 1 2 1 1 1 0 0 0 0 1 1 0 0 14 0 1554.7752 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 893 906 WDR3 WD repeat-containing protein 3 yes no 2 7.1657E-05 77.124 4 2 1.2974 0.77255 38.099 6 Plateau 1.3257 1.4454 45.915 4 0 Linear 0.91772 0.74399 4.6726 2 0 Median 107130000 48574000 58555000 90904000 39905000 50999000 16224000 8668600 7555600 2372 1827 2436;2437 6251;6252;6253;6254;6255;6256 9754;9755;9756;9757;9758;9759;9760;9761;9762 9757 1682 9 DVISAQFENTTTSK KKTCSSCSKDILNPKDVISAQFENTTTSKD KDVISAQFENTTTSKDFCSQSCLSTYELKK K D V S K D 1 0 1 1 0 1 1 0 0 1 0 1 0 1 0 2 3 0 0 1 0 0 14 0 1539.7417 Q5VZL5;H7C1I7 Q5VZL5 401 414 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 9.9709E-10 121.68 1 1 1.3315 1.1701 51.614 2 Median 0.82587 0.81231 NaN 1 0 Median 2.1467 1.6855 NaN 1 0 Median 23115000 10561000 12554000 19960000 9415700 10544000 3154700 1145500 2009300 2373 1835 2438 6257;6258 9763;9764;9765 9763 3 DVLAHQVPNAK VDLILENTSKVPAPKDVLAHQVPNAKKLRR PAPKDVLAHQVPNAKKLRRKEQLWEKLAKQ K D V A K K 2 0 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1190.6408 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4DVK1;B4E013;M0QZ34;M0QX73 Q7L4X7 129 139 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 5.4796E-08 110.76 3 2 1.2344 0.98491 15.204 3 Median 1.2332 1.2683 NaN 1 0 Median 1.2492 0.97522 1.3981 2 0 Median 30715000 17493000 13222000 24001000 14175000 9825500 6714500 3318200 3396300 2374 1068 2439 6259;6260;6261;6262;6263 9766;9767;9768;9769;9770;9771;9772 9767 7 DVLDSVL EDLESVGKGAVHDVKDVLDSVL________ KGAVHDVKDVLDSVL_______________ K D V V L - 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 7 0 759.40143 P81605 P81605 104 110 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 1 0.052014 69.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4262400 0 0 4262400 0 0 0 0 0 2375 1666 2440 6264 9773 9773 1 DVLGWGENDR DQGLLCDLLWSDPDKDVLGWGENDRGVSFT SDPDKDVLGWGENDRGVSFTFGAEVVAKFL K D V D R G 0 1 1 2 0 0 1 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 10 0 1159.5258 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;B4DNE3 A0A024RBP2 212 221 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 2 3.8375E-08 118.18 2 1 1.6126 1.8193 26.969 3 Median 1.594 1.7761 3.4006 2 0 Median 3.4481 2.8283 NaN 1 0 Median 130140000 51261000 78879000 117760000 48072000 69683000 12385000 3189200 9195800 2376 343 2441 6265;6266;6267 9774;9775;9776;9777;9778 9774 5 DVLIQGLIDENPGLQLIIR SETDNDSQEIFKLAKDVLIQGLIDENPGLQ QGLIDENPGLQLIIRNFWSHETRLPSNTLD K D V I R N 0 1 1 2 0 2 1 2 0 4 4 0 0 0 1 0 0 0 0 1 0 0 19 0 2118.2049 P78527 P78527 2504 2522 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.5675E-26 123.02 1 0.19891 0.1658 NaN 1 Median NaN NaN NaN 0 0 Median 0.19891 0.1658 NaN 1 0 Median 10608000 8968700 1639000 0 0 0 10608000 8968700 1639000 2377 1665 2442 6268 9779 9779 0 DVLLDVAYAYGK AISYHLVQKPFSLTKDVLLDVAYAYGKLSF LTKDVLLDVAYAYGKLSFHQTQVSQRLATD K D V G K L 2 0 0 2 0 0 0 1 0 0 2 1 0 0 0 0 0 0 2 2 0 0 12 0 1325.6867 D3DVL7;B4DU42;Q969Z0;C9IZN7;B3KRS4;B3KMT3 D3DVL7 239 250 TBRG4 Protein TBRG4 yes no 2 0.00077045 85.377 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9850000 0 9850000 9850000 0 9850000 0 0 0 2378 1036 2443 6269 9780 9780 1 DVLLPWYNAYR ENLRFKEEGVRDVLKDVLLPWYNAYRFLIQ DVLKDVLLPWYNAYRFLIQNVLRLQKEEEI K D V Y R F 1 1 1 1 0 0 0 0 0 0 2 0 0 0 1 0 0 1 2 1 0 0 11 0 1408.7139 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4 Q59G75 668 678 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.00018196 92.439 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3637000 3637000 0 3637000 3637000 0 0 0 0 2379 1561 2444 6270 9781 9781 1 DVLLQVDDER QAACKQVRRTEKKLKDVLLQVDDERRNAEQ EKKLKDVLLQVDDERRNAEQYKDQADKAST K D V E R R 0 1 0 3 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 10 0 1200.5986 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1846 1855 MYH9;FLJ00279 Myosin-9 yes no 2 0.0037627 75.294 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3814600 0 3814600 3814600 0 3814600 0 0 0 2380 81 2445 6271 9782 9782 1 DVLLQVDDERR QAACKQVRRTEKKLKDVLLQVDDERRNAEQ KKLKDVLLQVDDERRNAEQYKDQADKASTR K D V R R N 0 2 0 3 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 11 1 1356.6997 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1846 1856 MYH9;FLJ00279 Myosin-9 yes no 2 0.00058144 85.622 1 1.9238 2.2938 NaN 1 Median 1.9238 2.2938 NaN 1 0 Median NaN NaN NaN 0 0 Median 235610000 72534000 163080000 235610000 72534000 163080000 0 0 0 2381 81 2446 6272 9783 9783 1 DVLLTAWENEQAVIER SHPVTDGYIVCEEFKDVLLTAWENEQAVIE VLLTAWENEQAVIERKEKEKKEKRALGNWK K D V E R K 2 1 1 1 0 1 3 0 0 1 2 0 0 0 0 0 1 1 0 2 0 0 16 0 1884.9581 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPI8 A0A024R2M8 819 834 XPC DNA repair protein complementing XP-C cells no no 2 1.4087E-08 122.39 2 1 0.7577 0.61743 NaN 1 Median NaN NaN NaN 0 0 Median 0.7577 0.61743 NaN 1 0 Median 25596000 21161000 4435200 16012000 16012000 0 9583800 5148600 4435200 2382 118;1184 2447 6273;6274;6275 9784;9785;9786 9785 3 DVLSVAFSSDNR LTTGTTTRRFVGHTKDVLSVAFSSDNRQIV HTKDVLSVAFSSDNRQIVSGSRDKTIKLWN K D V N R Q 1 1 1 2 0 0 0 0 0 0 1 0 0 1 0 3 0 0 0 2 0 0 12 0 1308.631 E9KL35;P63244;J3KPE3;H0Y8W2;H0YAF8;D6RHH4;D6R9Z1;H0YAM7;D6R9L0;D6RFX4;B4DVD2;D6RFZ9;D6RAU2;E9PD14 E9KL35 107 118 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 1.3553E-05 106.4 1 2 1.7886 1.5696 10.65 3 Median 1.7886 1.7894 NaN 1 0 Median 1.8261 1.5081 5.6498 2 0 Median 50256000 17612000 32644000 17021000 6675000 10346000 33234000 10937000 22298000 2383 1227 2448 6276;6277;6278 9787;9788;9789;9790;9791 9789 5 DVMASAALAAEPSPLPGSLIR TEQKKIIKKRENKKRDVMASAALAAEPSPL ALAAEPSPLPGSLIRGQRKSASSFFKELRE R D V I R G 5 1 0 1 0 0 1 1 0 1 3 0 1 0 3 3 0 0 0 1 0 0 21 0 2065.0878 Q8NDD1;Q5TBH9;Q5TBI2;B4E0F7 Q8NDD1 61 81 C1orf131 Uncharacterized protein C1orf131 yes no 2 5.768E-16 107.99 2 2 1.2382 1.1645 40.368 4 Median 1.5829 1.6617 2.4596 2 0 Median 0.97963 0.82622 0.70276 2 0 Median 69096000 28758000 40338000 56801000 22765000 34036000 12295000 5993100 6302100 2384 1925 2449 6279;6280;6281;6282 9792;9793;9794;9795;9796;9797;9798 9794 1755 7 DVMQQQLAEYQELLDVK RKMLDAKEQEMTEMRDVMQQQLAEYQELLD MQQQLAEYQELLDVKLALDMEINAYRKLLE R D V V K L 1 0 0 2 0 4 2 0 0 0 3 1 1 0 0 0 0 0 1 2 0 0 17 0 2049.0089 Q03252;A0A0A7M1X5 Q03252 365 381 LMNB2 Lamin-B2 yes no 2 1.9618E-05 79.614 2 1.4625 1.4834 6.7601 2 Median 1.4625 1.4834 6.7601 2 0 Median NaN NaN NaN 0 0 Median 22569000 10152000 12417000 22569000 10152000 12417000 0 0 0 2385 1682 2450 6283;6284 9799;9800;9801;9802;9803 9801 1497 5 DVNAAIAAIK YMACCLLYRGDVVPKDVNAAIAAIKTKRSI DVVPKDVNAAIAAIKTKRSIQFVDWCPTGF K D V I K T 4 0 1 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 10 0 984.5604 P68366 P68366 327 336 TUBA4A Tubulin alpha-4A chain yes yes 2 0.015301 60.91 3 2 1.2584 1.0832 27.965 3 Median 1.6537 1.6205 NaN 1 0 Median 1.1951 1.0127 9.5171 2 0 Median 38654000 9020600 29634000 35545000 7649700 27895000 3109300 1371000 1738400 2386 1659 2451 6285;6286;6287;6288;6289 9804;9805;9806;9807;9808 9806 4 DVNAAIATIK YMACCLLYRGDVVPKDVNAAIATIKTKRSI DVVPKDVNAAIATIKTKRSIQFVDWCPTGF K D V I K T 3 0 1 1 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 1 0 0 10 0 1014.571 B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;Q53GA7;F5H5D3;Q9BQE3;Q8N532;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 292 301 TUBA1B;TUBA1C;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2 0.00031979 90.15 3 2 1.5114 1.7287 31.125 5 Median 1.5121 1.7779 1.5895 3 0 Plateau 1.2325 0.99988 5.2967 2 0 Median 743290000 292420000 450870000 690660000 268600000 422060000 52628000 23821000 28807000 2387 922;1257;1869 2452 6290;6291;6292;6293;6294 9809;9810;9811;9812;9813;9814;9815;9816;9817;9818 9810 10 DVNQQEFVR ______________________________ PGVTVKDVNQQEFVRALAAFLKKSGKLKVP K D V V R A 0 1 1 1 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 9 0 1133.5465 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 B0ZBD0 8 16 RPS19 40S ribosomal protein S19 yes no 2 5.0902E-09 130.27 2 2 1.1289 1.0007 14.063 3 Median 1.065 1.2436 NaN 1 0 Median 1.173 0.97796 3.2533 2 0 Median 581570000 272380000 309190000 545930000 256420000 289510000 35638000 15953000 19685000 2388 811 2453 6295;6296;6297;6298 9819;9820;9821;9822;9823;9824;9825;9826 9819 8 DVNTNSENWAVVK RASGFVRARGGGDIRDVNTNSENWAVVKAA IRDVNTNSENWAVVKAALVAGMYPNLVHVD R D V V K A 1 0 3 1 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 3 0 0 13 0 1474.7052 Q6ZMY0;Q9H6S0 Q6ZMY0 870 882 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 2 3.3404E-09 121.9 2 1.4313 1.423 NaN 1 Median 1.4313 1.423 NaN 1 0 Median NaN NaN NaN 0 0 Median 15044000 3897400 11147000 15044000 3897400 11147000 0 0 0 2389 1863 2454 6299;6300 9827;9828 9827 2 DVNVNFEK RRDYVFIEFCVEDSKDVNVNFEKSKLTFSC FCVEDSKDVNVNFEKSKLTFSCLGGSDNFK K D V E K S 0 0 2 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 963.46616 A0A024RB32;A0A087WYT3;B3KUY2;Q15185;B4DDC6 A0A024RB32 26 33 PTGES3 Prostaglandin E synthase 3 yes no 1;2 0.0092601 93.649 3 4.4764 5.1698 4.1932 3 Plateau 4.4764 5.1698 4.1932 3 0 Plateau NaN NaN NaN 0 0 Median 399820000 75553000 324260000 399820000 75553000 324260000 0 0 0 2390 323 2455 6301;6302;6303 9829;9830;9831;9832 9832 4 DVPAYSQDTFK NPTRSEDLLDYGPFRDVPAYSQDTFKVHYE GPFRDVPAYSQDTFKVHYENNSPFLTITSM R D V F K V 1 0 0 2 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 1 0 0 11 0 1269.5877 Q96HX3;Q6IBR0;Q53EP4;P04843;B4DL99;B7Z4L4 Q96HX3 166 176 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.0018568 64.297 2 1.2477 1.2846 4.2863 2 Median 1.2477 1.2846 4.2863 2 0 Median NaN NaN NaN 0 0 Median 28871000 12917000 15954000 28871000 12917000 15954000 0 0 0 2391 1444 2456 6304;6305 9833;9834;9835;9836 9834 4 DVPDSQQHPAPEK GQRRESSRPVKPPKKDVPDSQQHPAPEKSS KKDVPDSQQHPAPEKSSKVSEQLKCCSGIL K D V E K S 1 0 0 2 0 2 1 0 1 0 0 1 0 0 3 1 0 0 0 1 0 0 13 0 1446.6739 O60885;A0A024R7H8;Q6PIS5;Q6NXE4;Q05BM2;Q5BJ26;M0QZD9 O60885 334 346 BRD4 Bromodomain-containing protein 4 yes no 2 0.00015017 84.479 2 0.6707 0.68497 1.8548 2 Median 0.6707 0.68497 1.8548 2 0 Median NaN NaN NaN 0 0 Median 11749000 6406000 5343000 11749000 6406000 5343000 0 0 0 2392 1399 2457 6306;6307 9837;9838;9839 9838 3 DVPESFTSEAYQWLNR GISREKVQWGVFVPRDVPESFTSEAYQWLN VPESFTSEAYQWLNRSQFYFLTKSQSLLTF R D V N R S 1 1 1 1 0 1 2 0 0 0 1 0 0 1 1 2 1 1 1 1 0 0 16 0 1940.8905 A8K330;Q8IWA0 A8K330 638 653 WDR75 WD repeat-containing protein 75 yes no 2 8.5138E-09 107.85 2 2 0.971 0.96981 7.9049 4 Median 0.80328 0.89377 6.7562 2 0 Median 1.185 1.0067 0.48624 2 0 Median 147100000 76640000 70462000 99894000 55396000 44499000 47207000 21244000 25963000 2393 716 2458 6308;6309;6310;6311 9840;9841;9842;9843;9844;9845;9846 9842 7 DVPLPVVR KLWTMPISSVRFVPRDVPLPVVRVASVFAN SVRFVPRDVPLPVVRVASVFANADKGDDEK R D V V R V 0 1 0 1 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 3 0 0 8 0 893.53345 Q86U86;E7EVG2;H0Y5B5;Q9NUX9 Q86U86 1089 1096 PBRM1 Protein polybromo-1 yes no 2 0.028567 53.163 1 0.7006 0.70102 NaN 1 Median 0.7006 0.70102 NaN 1 0 Median NaN NaN NaN 0 0 Median 11418000 6583000 4835100 11418000 6583000 4835100 0 0 0 2394 1883 2459 6312 9847 9847 1 DVPLTAEEVEFVVEK RWDQQYVIQLTSMFKDVPLTAEEVEFVVEK DVPLTAEEVEFVVEKALSMFSKMNLQEIPP K D V E K A 1 0 0 1 0 0 4 0 0 0 1 1 0 1 1 0 1 0 0 4 0 0 15 0 1702.8665 B7ZMF2;Q9NVI1;H3BP78;F8W7R3;B3KNW8;H3BN35;H3BT54;H3BMG4 B7ZMF2 183 197 FANCI Fanconi anemia group I protein yes no 2 0.00038708 73.848 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6548100 6548100 0 6548100 6548100 0 0 0 0 2395 1116 2460 6313 9848 9848 1 DVPNETLQVEEDDRPELPWWK NLTEWIEILKTVVNRDVPNETLQVEEDDRP LQVEEDDRPELPWWKCKKWALHILARLFER R D V W K C 0 1 1 3 0 1 4 0 0 0 2 1 0 0 3 0 1 2 0 2 0 0 21 1 2594.2289 O95373 O95373 239 259 IPO7 Importin-7 yes yes 3 2.6824E-07 57.989 2 2.0672 2.2765 2.813 2 Median 2.0672 2.2765 2.813 2 0 Median NaN NaN NaN 0 0 Median 16897000 6950600 9946100 16897000 6950600 9946100 0 0 0 2396 1424 2461 6314;6315 9849;9850 9850 2 DVPVVAILGSGGGFR KLLGPKNSEGLHSARDVPVVAILGSGGGFR DVPVVAILGSGGGFRAMVGFSGVMKALYES R D V F R A 1 1 0 1 0 0 0 4 0 1 1 0 0 1 1 1 0 0 0 3 0 0 15 0 1442.7882 A8K2S1;P47712 A8K2S1 186 200 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes no 2 3.2116E-06 98.105 2 2 2.1431 2.005 57.547 4 Median 3.1911 3.2522 22.622 2 0 Median 1.4299 1.2582 20.122 2 0 Median 29031000 7560100 21471000 26372000 6451200 19921000 2659400 1108800 1550600 2397 712 2462 6316;6317;6318;6319 9851;9852;9853;9854;9855;9856 9853 6 DVQDELR RSQAASILTKFQELKDVQDELRIKENELRA LTKFQELKDVQDELRIKENELRALEEELAG K D V L R I 0 1 0 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 873.41921 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 683 689 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.027041 86.086 1 1 1.2602 1.2337 36.277 2 Median 0.82208 0.95455 NaN 1 0 Median 1.9319 1.5944 NaN 1 0 Median 82947000 41381000 41566000 64084000 34640000 29444000 18863000 6741300 12122000 2398 69 2463 6320;6321 9857;9858;9859 9858 3 DVQDSLTVSNEAQTAK VHYYEDGNVQLVSHKDVQDSLTVSNEAQTA VQDSLTVSNEAQTAKEFIKIIENAENEYQT K D V A K E 2 0 1 2 0 2 1 0 0 0 1 1 0 0 0 2 2 0 0 2 0 0 16 0 1704.8166 A8K0T9;A0A024R0E5;P52907 A8K0T9 211 226 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 2 1.7938E-12 154.1 1 2 2.4994 1.9832 19.535 3 Median 1.5444 1.5369 NaN 1 0 Median 2.6663 2.1153 9.1165 2 0 Median 34704000 13843000 20861000 26210000 10971000 15239000 8493800 2871900 5621900 2399 43 2464 6322;6323;6324 9860;9861;9862;9863 9860 4 DVQEIATVVVPK RLKSILKLDGDVLMKDVQEIATVVVPKPKH LMKDVQEIATVVVPKPKHCQEKMQCEVKDE K D V P K P 1 0 0 1 0 1 1 0 0 1 0 1 0 0 1 0 1 0 0 4 0 0 12 0 1296.7289 A0A024RB76;Q9BRT6 A0A024RB76 43 54 C12orf31;LLPH Protein LLP homolog yes no 2 2.4328E-05 101.38 2 2 0.78661 0.74808 31.662 4 Median 0.87271 0.979 1.851 2 0 Median 0.71701 0.56642 3.1471 2 0 Median 197850000 108280000 89567000 167650000 90357000 77296000 30192000 17922000 12270000 2400 327 2465 6325;6326;6327;6328 9864;9865;9866;9867;9868;9869;9870 9864 7 DVQEIFR LDECDKMLEQLDMRRDVQEIFRLTPHEKQC LEQLDMRRDVQEIFRLTPHEKQCMMFSATL R D V F R L 0 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 905.46068 A0A024RCM3;Q13838;A0A0G2JJZ9;Q5STU3;F6WLT2;B4DP52;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;B4DIJ6;F6UJC5;A0A140TA18;B4DIZ8;O00148;B4DX78;K7EQN7;A0A024R7H0 O00148 209 215 hCG_2005638;DDX39B;DDX39A;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 0.025781 88.734 2 1.4627 1.542 5.3954 2 Median 1.4627 1.542 5.3954 2 0 Median NaN NaN NaN 0 0 Median 59926000 25638000 34288000 59926000 25638000 34288000 0 0 0 2401 1359;362 2466 6329;6330 9871;9872;9873 9871 3 DVQGTDASLDEELDR PVPGTPDSLSSGSSRDVQGTDASLDEELDR DVQGTDASLDEELDRVKMS___________ R D V D R V 1 1 0 4 0 1 2 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 15 0 1661.738 Q9UJZ1;A0A087WYB4 Q9UJZ1 338 352 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 0.00018754 77.185 1 1.3157 1.3775 NaN 1 Median 1.3157 1.3775 NaN 1 0 Median NaN NaN NaN 0 0 Median 10856000 3649500 7206300 10856000 3649500 7206300 0 0 0 2402 2104 2467 6331 9874;9875;9876 9874 3 DVQGWGENDR DQGLLCDLLWSDPDKDVQGWGENDRGVSFT SDPDKDVQGWGENDRGVSFTFGAEVVAKFL K D V D R G 0 1 1 2 0 1 1 2 0 0 0 0 0 0 0 0 0 1 0 1 0 0 10 0 1174.5003 P62136;A0A140VJS9;B3KXM2;E9PMD7;V9HW04;P62140;B4DJ75;B7ZB67 P62136 212 221 PPP1CA;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 0.002232 70.028 2 2 1.237 1.137 27.764 4 Median 0.85784 0.9036 1.9888 2 0 Median 1.7396 1.4577 4.6414 2 0 Median 66525000 32925000 33600000 49263000 26480000 22783000 17262000 6445400 10817000 2403 1632;1633 2468 6332;6333;6334;6335 9877;9878;9879;9880;9881 9881 3 DVQIGDIVTVGECR KRHKNMSVHLSPCFRDVQIGDIVTVGECRP RDVQIGDIVTVGECRPLSKTVRFNVLKVTK R D V C R P 0 1 0 2 1 1 1 2 0 2 0 0 0 0 0 0 1 0 0 3 0 0 14 0 1559.7614 P62280;M0R1H5 P62280 119 132 RPS11 40S ribosomal protein S11 yes no 2 1.2548E-10 124.86 2 2 0.88545 0.85262 6.3073 4 Median 0.80655 0.87996 7.2659 2 0 Median 0.99188 0.8332 6.0614 2 0 Median 128860000 67333000 61524000 96436000 50573000 45863000 32421000 16760000 15661000 2404 1641 2469 6336;6337;6338;6339 9882;9883;9884;9885;9886;9887;9888 9882 7 DVQIGDIVTVGECRPLSK KRHKNMSVHLSPCFRDVQIGDIVTVGECRP IGDIVTVGECRPLSKTVRFNVLKVTKAAGT R D V S K T 0 1 0 2 1 1 1 2 0 2 1 1 0 0 1 1 1 0 0 3 0 0 18 1 1985.0252 P62280;M0R1H5 P62280 119 136 RPS11 40S ribosomal protein S11 yes no 2;3 7.9278E-11 114.69 4 4 0.88772 0.97139 8.0152 8 Median 0.82299 0.9914 1.383 4 0 Median 0.99009 0.87606 7.9909 4 0 Median 2404200000 1304600000 1099600000 1357100000 760150000 596960000 1047100000 544500000 502630000 2405 1641 2470 6340;6341;6342;6343;6344;6345;6346;6347 9889;9890;9891;9892;9893;9894;9895;9896;9897;9898;9899;9900;9901;9902;9903;9904;9905 9895 17 DVQSPGFLNEPLSSK DNMELSKSATCKNIKDVQSPGFLNEPLSSK DVQSPGFLNEPLSSKSQRRKSLKLKNDKTI K D V S K S 0 0 1 1 0 1 1 1 0 0 2 1 0 1 2 3 0 0 0 1 0 0 15 0 1616.8046 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1073 1087 CASC5 Protein CASC5 yes no 2 2.4507E-05 87.001 2 2 0.91266 0.83139 10.573 4 Median 0.73508 0.75695 5.0393 2 0 Median 1.1199 0.90029 3.0341 2 0 Median 56168000 31975000 24193000 45227000 27050000 18177000 10941000 4925100 6015700 2406 1928 2471 6348;6349;6350;6351 9906;9907;9908;9909;9910;9911;9912;9913 9910 8 DVQTALALAK GNNCVFAPADVTSEKDVQTALALAKGKFGR VTSEKDVQTALALAKGKFGRVDVAVNCAGI K D V A K G 3 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1028.5866 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 70 79 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 0.0022766 69.825 1 2 1.6791 1.7681 31.889 3 Plateau 1.6791 1.7681 NaN 1 0 Median 1.2686 1.019 3.0593 2 0 Median 35818000 14955000 20863000 30696000 12619000 18077000 5122400 2336700 2785700 2407 555 2472 6352;6353;6354 9914;9915;9916;9917;9918;9919 9914 6 DVSSVELLMNNHQGIK MEDVIRQIEAQEKPRDVSSVELLMNNHQGI VSSVELLMNNHQGIKAEIDARNDSFTTCIE R D V I K A 0 0 2 1 0 1 1 1 1 1 2 1 1 0 0 2 0 0 0 2 0 0 16 0 1782.8934 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1856 1871 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.004179 44.299 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2852300 0 2852300 2852300 0 2852300 0 0 0 2408 415 2473 6355 9920 9920 300 1 DVTEAEQAEEQAR HALTGASDSRVILWKDVTEAEQAEEQARQE WKDVTEAEQAEEQARQEEQVVRQQELDNLL K D V A R Q 3 1 0 1 0 2 4 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 13 0 1474.6536 Q12788;J3KNP2;A0JLS5 Q12788 634 646 TBL3 Transducin beta-like protein 3 yes no 2 6.9545E-49 192.44 3 2 1.0087 0.98242 3.907 4 Median 0.86337 0.97443 3.7647 2 0 Median 1.1975 0.99934 5.0248 2 0 Median 190500000 100590000 89910000 153500000 84078000 69419000 37004000 16512000 20492000 2409 1698 2474 6356;6357;6358;6359;6360 9921;9922;9923;9924;9925;9926;9927;9928;9929 9925 9 DVTEAEQAEEQARQEEQVVR HALTGASDSRVILWKDVTEAEQAEEQARQE EQAEEQARQEEQVVRQQELDNLLHEKRYLR K D V V R Q 3 2 0 1 0 4 6 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 20 1 2343.0939 Q12788;J3KNP2;A0JLS5 Q12788 634 653 TBL3 Transducin beta-like protein 3 yes no 3 3.081E-13 92.307 2 2 1.1482 1.0827 10.47 4 Median 1.0853 1.1974 10.998 2 0 Median 1.1906 1.0391 2.5766 2 0 Median 113470000 50647000 62826000 61915000 28819000 33095000 51558000 21828000 29730000 2410 1698 2475 6361;6362;6363;6364 9930;9931;9932;9933;9934;9935;9936;9937;9938 9936 9 DVTGAEALLER INGIRGLVSSDELAKDVTGAEALLERHQEH ELAKDVTGAEALLERHQEHRTEIDARAGTF K D V E R H 2 1 0 1 0 0 2 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1172.6037 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1350 1360 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 2.2587E-08 121.83 2 2 1.4331 1.5257 0.48184 2 Median 1.4331 1.5257 0.48184 2 0 Median NaN NaN NaN 0 0 Median 51798000 21066000 30732000 50062000 21066000 28996000 1735900 0 1735900 2411 523 2476 6365;6366;6367;6368 9939;9940;9941;9942;9943 9941 5 DVTILAATNRPDR LAQLLTEMDGIEQLKDVTILAATNRPDRID LKDVTILAATNRPDRIDKALMRPGRIDRII K D V D R I 2 2 1 2 0 0 0 0 0 1 1 0 0 0 1 0 2 0 0 1 0 0 13 1 1440.7685 Q8NB90 Q8NB90 765 777 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 0.00069311 79.07 1 1.0559 1.1545 NaN 1 Median 1.0559 1.1545 NaN 1 0 Median NaN NaN NaN 0 0 Median 13189000 5387400 7801600 13189000 5387400 7801600 0 0 0 2412 1919 2477 6369 9944 9944 1 DVTVLSVAEEQDLLK ELIDQDDCISHSEPKDVTVLSVAEEQDLLK DVTVLSVAEEQDLLKQERLVTVDEIGEVEE K D V L K Q 1 0 0 2 0 1 2 0 0 0 3 1 0 0 0 1 1 0 0 3 0 0 15 0 1657.8774 Q14966;A0A096LPK8;Q57Z90 Q14966 1662 1676 ZNF638;NP220 Zinc finger protein 638 yes no 2 1.6472E-10 121.02 2 1.5678 1.6169 7.3811 2 Median 1.5678 1.6169 7.3811 2 0 Median NaN NaN NaN 0 0 Median 20988000 8997000 11991000 20988000 8997000 11991000 0 0 0 2413 1746 2478 6370;6371 9945;9946;9947 9947 3 DVVEPLLRPQWYVR IEDNPMVVPLCNRSKDVVEPLLRPQWYVRC KDVVEPLLRPQWYVRCGEMAQAASAAVTRG K D V V R C 0 2 0 1 0 1 1 0 0 0 2 0 0 0 2 0 0 1 1 3 0 0 14 1 1768.9624 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 668 681 VARS Valine--tRNA ligase yes no 3 0.052126 25.322 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2414 363 2479 6372 9948 9948 1 DVVMEPTMK EVQEKAIEEQMVAAKDVVMEPTMKTLSDDL QMVAAKDVVMEPTMKTLSDDLDEAAKEFQE K D V M K T 0 0 0 1 0 0 1 0 0 0 0 1 2 0 1 0 1 0 0 2 0 0 9 0 1048.4933 Q9H0A0;A0A087WV29 Q9H0A0 923 931 NAT10 N-acetyltransferase 10 yes no 2 0.011489 60.019 2 1.0596 1.0541 6.3478 2 Median 1.0596 1.0541 6.3478 2 0 Median NaN NaN NaN 0 0 Median 49723000 19982000 29740000 49723000 19982000 29740000 0 0 0 2415 2023 2480 6373;6374 9949;9950;9951;9952 9951 1858;1859 4 DVVMVGLGDHQFQMQLLQR VIYQQIIQTYLTVCKDVVMVGLGDHQFQMQ VGLGDHQFQMQLLQRSLGIMQTVKGFFYVS K D V Q R S 0 1 0 2 0 4 0 2 1 0 3 0 2 1 0 0 0 0 0 3 0 0 19 0 2213.1085 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 890 908 NCAPG2 Condensin-2 complex subunit G2 yes no 3 5.1129E-07 75.682 2 2.6358 2.8779 NaN 1 Median 2.6358 2.8779 NaN 1 0 Median NaN NaN NaN 0 0 Median 50100000 10093000 40007000 50100000 10093000 40007000 0 0 0 2416 1887 2481 6375;6376 9953;9954 9953 1731;1732 2 DVVMVHEPK ETQMKDLDVITIPSKDVVMVHEPKQKVDLT ITIPSKDVVMVHEPKQKVDLTRYLENQTFR K D V P K Q 0 0 0 1 0 0 1 0 1 0 0 1 1 0 1 0 0 0 0 3 0 0 9 0 1052.5325 B0AZS5;O00139;B4DM85;D6R9M0 B0AZS5 206 214 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 4.2051E-05 96.948 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29309000 0 29309000 29309000 0 29309000 0 0 0 2417 804 2482 6377;6378 9955;9956 9955 644 2 DVVQAYPEVR HERDINTDFLLVVLRDVVQAYPEVRIVLMS LVVLRDVVQAYPEVRIVLMSATIDTSMFCE R D V V R I 1 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 10 0 1174.5982 Q08211;Q58F26;Q6PJK6 Q08211 529 538 DHX9 ATP-dependent RNA helicase A yes no 2 0.00035698 91.867 1 2 1.4151 1.2033 4.7563 2 Median NaN NaN NaN 0 0 Median 1.4151 1.2033 4.7563 2 0 Median 249120000 20322000 228790000 201160000 0 201160000 47953000 20322000 27631000 2418 1691 2483 6379;6380;6381 9957;9958;9959;9960 9957 4 DVVSSLR GPTLTFQVKKYSLVRDVVSSLRRHRMHEQQ VKKYSLVRDVVSSLRRHRMHEQQFAHPPLL R D V L R R 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 7 0 774.42357 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 120 126 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.026873 81.381 2 1 0.92641 0.92055 7.5414 2 Median 0.75985 0.87275 NaN 1 0 Median 1.1295 0.97098 NaN 1 0 Median 88191000 29089000 59102000 81553000 25674000 55879000 6637800 3414400 3223400 2419 493 2484 6382;6383;6384 9961;9962;9963 9962 3 DVVSSLRR GPTLTFQVKKYSLVRDVVSSLRRHRMHEQQ KKYSLVRDVVSSLRRHRMHEQQFAHPPLLV R D V R R H 0 2 0 1 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 8 1 930.52468 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 120 127 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.02126 67.032 1 1 1.2712 1.1507 NaN 1 Median NaN NaN NaN 0 0 Median 1.2712 1.1507 NaN 1 0 Median 10749000 2032600 8716900 6169600 0 6169600 4579900 2032600 2547200 2420 493 2485 6385;6386 9964;9965 9965 2 DVWGIEGPIDAAFTR LDEKAVRPGYPKLIRDVWGIEGPIDAAFTR DVWGIEGPIDAAFTRVNCQGKTYLFKGSQY R D V T R V 2 1 0 2 0 0 1 2 0 2 0 0 0 1 1 0 1 1 0 1 0 0 15 0 1645.81 CON__Q3ZBS7;B7Z553;D9ZGG2;P04004 CON__Q3ZBS7 194 208 VTN Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B yes no 2 9.957E-07 93.766 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34852000 34852000 0 34852000 34852000 0 0 0 0 + 2421 1173 2486 6387;6388 9966;9967;9968 9966 3 DVYAVLQLEAEEK DVILKFRDKIEKMEKDVYAVLQLEAEEKEM EKDVYAVLQLEAEEKEMQQSEAQINTAKRL K D V E K E 2 0 0 1 0 1 3 0 0 0 2 1 0 0 0 0 0 0 1 2 0 0 13 0 1505.7613 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 578 590 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 4.1448E-09 121.08 2 2 0.92822 0.86843 7.578 4 Median 0.75224 0.81799 0.97063 2 0 Median 1.1609 0.93053 2.2777 2 0 Median 132830000 71693000 61135000 91621000 53259000 38361000 41207000 18434000 22773000 2422 899;1099 2487 6389;6390;6391;6392 9969;9970;9971;9972;9973;9974;9975;9976;9977 9973 9 DVYVQLYLQHLTAR LVANNVTLPAGEQRKDVYVQLYLQHLTARN KDVYVQLYLQHLTARNRPPLPAGTNSKGPP K D V A R N 1 1 0 1 0 2 0 0 1 0 3 0 0 0 0 0 1 0 2 2 0 0 14 0 1717.9152 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;P42166 P42166 35 48 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2;3 8.8357E-05 87.216 2 4 1.0572 0.93302 20.352 4 Median 0.7587 0.8408 NaN 1 0 Median 1.1866 1.0354 22.773 3 0 Median 91845000 49998000 41847000 64752000 36770000 27982000 27093000 13228000 13865000 2423 334;1562 2488 6393;6394;6395;6396;6397;6398 9978;9979;9980;9981;9982;9983;9984;9985;9986;9987 9978 10 DWDELEEEAR DYSKESLGSEEESGKDWDELEEEARKADRE EESGKDWDELEEEARKADRESRYEEEEEQS K D W A R K 1 1 0 2 0 0 4 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 10 0 1290.5364 Q9Y5B9 Q9Y5B9 989 998 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00013082 96.331 2 2 0.80105 0.755 9.2735 4 Median 0.65745 0.69489 4.3482 2 0 Median 0.93692 0.80948 2.4679 2 0 Median 55791000 33489000 22302000 47270000 29094000 18176000 8521100 4394900 4126300 2424 2148 2489 6399;6400;6401;6402 9988;9989;9990;9991;9992;9993 9988 6 DWDELEEEARK DYSKESLGSEEESGKDWDELEEEARKADRE ESGKDWDELEEEARKADRESRYEEEEEQSR K D W R K A 1 1 0 2 0 0 4 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 11 1 1418.6314 Q9Y5B9 Q9Y5B9 989 999 SUPT16H FACT complex subunit SPT16 yes yes 2 4.0205E-08 121.6 2 1 0.77625 0.92334 33.144 3 Median 0.76698 0.89328 4.6813 2 0 Median 1.9056 1.5814 NaN 1 0 Median 70294000 40075000 30219000 66532000 38970000 27563000 3761200 1105300 2655900 2425 2148 2490 6403;6404;6405 9994;9995;9996;9997;9998;9999 9997 6 DWEDDSDEDMSNFDR RAKLNWLSVDFNNWKDWEDDSDEDMSNFDR DWEDDSDEDMSNFDRFSEMMNNMGGDEDVD K D W D R F 0 1 1 6 0 0 2 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 15 0 1874.6537 A0A024RB32;A0A087WYT3;B3KUY2;Q15185;B4DDC6 A0A024RB32 108 122 PTGES3 Prostaglandin E synthase 3 yes no 2 0.0021768 53.569 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2426 323 2491 6406;6407 10000;10001 10001 248 2 DWNIPFK CHFMPPEKVHKELFKDWNIPFKQPSYPSVK KVHKELFKDWNIPFKQPSYPSVKRYNRNRT K D W F K Q 0 0 1 1 0 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 7 0 918.45995 Q9BYG3;C9J808;C9J6C5;B4DSM4 Q9BYG3 133 139 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 0.024609 89.903 2 2 1.1175 1.0423 9.5707 4 Median 0.87882 0.96591 0.18572 2 0 Median 1.412 1.1388 1.9438 2 0 Median 113790000 58676000 55117000 97695000 52184000 45510000 16099000 6491900 9606900 2427 2019 2492 6408;6409;6410;6411 10002;10003;10004;10005;10006;10007;10008 10005 7 DWVLNEFK WPAMGIHGDKSQQERDWVLNEFKHGKAPIL DKSQQERDWVLNEFKHGKAPILIATDVASR R D W F K H 0 0 1 1 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 1 0 0 8 0 1049.5182 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2 B4DN41 370 377 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0064228 87.323 2 1.1431 1.1561 NaN 1 Median 1.1431 1.1561 NaN 1 0 Median NaN NaN NaN 0 0 Median 42618000 13004000 29614000 42618000 13004000 29614000 0 0 0 2428 1009 2493 6412;6413 10009;10010;10011 10011 3 DWVLNEFR WPAMCIHGDKSQPERDWVLNEFRSGKAPIL DKSQPERDWVLNEFRSGKAPILIATDVASR R D W F R S 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 8 0 1077.5243 Q59F66;Q92841;B4DZQ7;A0A0U1RQJ0 Q59F66 460 467 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.013109 66.073 2 1.2153 1.213 3.7479 2 Median 1.2153 1.213 3.7479 2 0 Median NaN NaN NaN 0 0 Median 15231000 6137400 9093600 15231000 6137400 9093600 0 0 0 2429 1801 2494 6414;6415 10012;10013 10012 2 DYAFVHFEDR SFSEFGKLERVKKLKDYAFVHFEDRGAAVK VKKLKDYAFVHFEDRGAAVKAMDEMNGKEI K D Y D R G 1 1 0 2 0 0 1 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 10 0 1297.5728 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5;B4DT28;B4DMD1 B2R7W4 375 384 HNRNPR;HNRPR;DKFZp686A13234 Heterogeneous nuclear ribonucleoprotein R yes no 2 0.0024806 68.893 1 0.65639 0.56094 NaN 1 Median NaN NaN NaN 0 0 Median 0.65639 0.56094 NaN 1 0 Median 3254300 1704600 1549700 0 0 0 3254300 1704600 1549700 2430 855 2495 6416 10014;10015 10014 2 DYAFVHMEK LFERRGRVIECDVVKDYAFVHMEKEADAKA ECDVVKDYAFVHMEKEADAKAAIAQLNGKE K D Y E K E 1 0 0 1 0 0 1 0 1 0 0 1 1 1 0 0 0 0 1 1 0 0 9 0 1138.5117 A0A0S2Z4Z0;Q96PK6;A0A0S2Z567 A0A0S2Z4Z0 113 121 RBM14 RNA-binding protein 14 yes no 2 0.0065878 56.432 1 2.2029 2.173 NaN 1 Median 2.2029 2.173 NaN 1 0 Median NaN NaN NaN 0 0 Median 24895000 8082700 16812000 24895000 8082700 16812000 0 0 0 2431 571 2496 6417 10016 10016 423 1 DYDEEEQGYDSEK ERKSESDKDVKQVTRDYDEEEQGYDSEKEK TRDYDEEEQGYDSEKEKKEEKKPIETGSPK R D Y E K E 0 0 0 3 0 1 4 1 0 0 0 1 0 0 0 1 0 0 2 0 0 0 13 0 1605.5955 Q05519;Q6MZM2;Q6N079;Q5T757 Q05519 424 436 SRSF11;DKFZp686D02116;DKFZp686P22142 Serine/arginine-rich splicing factor 11 yes no 2 8.5211E-11 116.55 2 1 0.47007 0.39474 NaN 1 Median NaN NaN NaN 0 0 Median 0.47007 0.39474 NaN 1 0 Median 1377000 884010 492980 0 0 0 1377000 884010 492980 2432 1684 2497 6418;6419;6420 10017;10018;10019 10018 3 DYDWINAER REAEDGAAKVSKMLKDYDWINAERHLFGQP VSKMLKDYDWINAERHLFGQPNSAYDFKTN K D Y E R H 1 1 1 2 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 9 0 1180.5149 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;A0A0C4DGE5 A0A024R158 937 945 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.001489 84.743 2 2 1.1098 1.071 33.996 4 Median 0.72609 0.80197 0.60059 2 0 Median 1.7132 1.4445 2.0056 2 0 Median 158470000 79878000 78594000 114540000 64224000 50315000 43933000 15654000 28279000 2433 69 2498 6421;6422;6423;6424 10020;10021;10022;10023;10024;10025;10026 10020 7 DYELQLVTYK EECQRFAKQYINAIKDYELQLVTYKAQLEP INAIKDYELQLVTYKAQLEPVASPAKKPKV K D Y Y K A 0 0 0 1 0 1 1 0 0 0 2 1 0 0 0 0 1 0 2 1 0 0 10 0 1270.6445 Q15149 Q15149 1418 1427 PLEC Plectin yes yes 2 0.0054397 63.534 2 1.3818 1.3634 NaN 1 Median 1.3818 1.3634 NaN 1 0 Median NaN NaN NaN 0 0 Median 9268200 2607100 6661100 9268200 2607100 6661100 0 0 0 2434 1754 2499 6425;6426 10027;10028 10028 2 DYEVELLR KEKDAYHKKCDQKKKDYEVELLRFLESLPE KCDQKKKDYEVELLRFLESLPEEEQQRVLG K D Y L R F 0 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 8 0 1035.5237 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0 E9PKP7 316 323 UBTF Nucleolar transcription factor 1 yes no 2 0.0010071 117.16 2 2 0.93145 0.92922 21.347 4 Median 0.65653 0.75667 8.1393 2 0 Median 1.2529 1.0851 1.0251 2 0 Median 417330000 238200000 179130000 329190000 199360000 129820000 88145000 38842000 49302000 2435 1244 2500 6427;6428;6429;6430 10029;10030;10031;10032;10033;10034;10035;10036 10030 8 DYEVSDSAPHLEGLAEFQENVR PESPFMFSLHLNEARDYEVSDSAPHLEGLA APHLEGLAEFQENVRKTNNFSAFLANVRKA R D Y V R K 2 1 1 2 0 1 4 1 1 0 2 0 0 1 1 2 0 0 1 2 0 0 22 0 2504.1456 Q9HBM1 Q9HBM1 181 202 SPC25 Kinetochore protein Spc25 yes yes 3 1.0631E-08 71.527 2 2 0.76575 0.76037 14.128 4 Median 0.74788 0.76037 7.6702 2 0 Median 0.8644 0.7318 22.919 2 0 Median 50027000 24131000 25896000 36326000 16738000 19588000 13701000 7393100 6308200 2436 2050 2501 6431;6432;6433;6434 10037;10038;10039;10040;10041;10042;10043 10039 6 DYFEEYGK FVGGIKEDTEEHHLRDYFEEYGKIDTIEII TEEHHLRDYFEEYGKIDTIEIITDRQSGKK R D Y G K I 0 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 8 0 1049.4342 P22626;A0A087WUI2;I6L957;A0A024RA28 P22626 130 137 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 1;2 0.0021115 116.73 5 2 2.327 2.5761 47.061 5 Median 2.4684 2.6231 1.0517 3 0 Median 1.3665 1.1055 4.4364 2 0 Median 222120000 49619000 172500000 209360000 44007000 165350000 12765000 5612100 7152800 2437 1508 2502 6435;6436;6437;6438;6439;6440;6441 10044;10045;10046;10047;10048;10049;10050 10044 7 DYFEQYGK FVGGIKEDTEEHHLRDYFEQYGKIEVIEIM TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK R D Y G K I 0 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 8 0 1048.4502 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q9BSM5;Q0VAC0;F8VZ49;A0A024RC46;A0A024QZ98;Q32P51;F8VYN5;F8VTQ5 F8W6I7 123 130 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 0.022274 57.281 2 1 1.7309 1.6299 71.539 2 Median 2.4177 2.703 NaN 1 0 Median 1.2392 0.9828 NaN 1 0 Median 168600000 33952000 134650000 162180000 31270000 130910000 6419500 2681900 3737700 2438 317 2503 6442;6443;6444 10051;10052;10053;10054;10055 10052 5 DYGEIFNVQLPDK PHSALPEEVQELFIRDYGEIFNVQLPDKEE IRDYGEIFNVQLPDKEERTKFFEDLILKQA R D Y D K E 0 0 1 2 0 1 1 1 0 1 1 1 0 1 1 0 0 0 1 1 0 0 13 0 1536.746 A0A024R9G7;Q6PL18;A0A0B4J211 A0A024R9G7 914 926 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 0.02389 45.915 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3207100 3207100 0 3207100 3207100 0 0 0 0 2439 278 2504 6445 10056 10056 1 DYGNSPLHR VQLPREGQEDQGLTKDYGNSPLHRFKKPGS DQGLTKDYGNSPLHRFKKPGSKNFQNIFPP K D Y H R F 0 1 1 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 1 0 0 0 9 0 1057.4941 A6NLN1;A0A0U1RRM4;P26599;A0A0D9SF20;A0A087WUW5;K7ELW5 A6NLN1 425 433 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 1.4666E-07 125.82 3 1 2.1788 2.3844 NaN 1 Median 2.1788 2.3844 NaN 1 0 Median NaN NaN NaN 0 0 Median 56063000 10139000 45924000 56063000 10139000 45924000 0 0 0 2440 592 2505 6446;6447;6448;6449 10057;10058;10059;10060 10057 4 DYGVFIQFPSGLSGLAPK IHPGMLLIGFVKSIKDYGVFIQFPSGLSGL VFIQFPSGLSGLAPKAIMSDKFVTSTSDHF K D Y P K A 1 0 0 1 0 1 0 3 0 1 2 1 0 2 2 2 0 0 1 1 0 0 18 0 1894.9829 Q14690;B4DH82;B4DES7 Q14690 741 758 PDCD11 Protein RRP5 homolog yes no 2 2.3166E-12 110.92 2 1.1235 1.256 3.3375 2 Median 1.1235 1.256 3.3375 2 0 Median NaN NaN NaN 0 0 Median 138760000 64922000 73839000 138760000 64922000 73839000 0 0 0 2441 1741 2506 6450;6451 10061;10062;10063;10064;10065 10064 5 DYGVLLEGSGLALR MNIALLSDLTKQISRDYGVLLEGSGLALRG RDYGVLLEGSGLALRGLFIIDPNGVIKHLS R D Y L R G 1 1 0 1 0 0 1 3 0 0 4 0 0 0 0 1 0 0 1 1 0 0 14 0 1461.7827 Q53HC2;P30048 Q53HC2 171 184 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 2 3.2055E-09 113.63 2 2 2.9342 2.9556 44.418 4 Linear 2.8829 2.9001 13.721 2 0 Median 1.6006 1.3761 13.125 2 0 Median 43565000 13037000 30528000 36079000 10334000 25745000 7485900 2703000 4782900 2442 1530 2507 6452;6453;6454;6455 10066;10067;10068;10069;10070;10071;10072;10073;10074;10075 10068 10 DYIVVGSDSGR VIRSLMAFRLTGGTKDYIVVGSDSGRIVIL GGTKDYIVVGSDSGRIVILEYQPSKNMFEK K D Y G R I 0 1 0 2 0 0 0 2 0 1 0 0 0 0 0 2 0 0 1 2 0 0 11 0 1166.5568 A8K6V3;Q15393;J3QL37;J3QRB2 A8K6V3 76 86 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.00093586 71.349 2 1 1.286 1.2969 32.575 3 Plateau 1.3013 1.2967 0.027771 2 0 Median 0.84248 0.73757 NaN 1 0 Median 30713000 12660000 18053000 28862000 11738000 17124000 1851200 922080 929120 2443 764 2508 6456;6457;6458 10076;10077;10078;10079;10080;10081 10076 6 DYLDFLDDEEDQGIYQSK GTVVLDDVELREAQRDYLDFLDDEEDQGIY DFLDDEEDQGIYQSKVRELISDNQYRLIVN R D Y S K V 0 0 0 5 0 2 2 1 0 1 2 1 0 1 0 1 0 0 2 0 0 0 18 0 2191.9433 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492 Q53HJ4 18 35 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 3.9761E-05 80.469 2 1.0792 1.1127 2.3142 2 Median 1.0792 1.1127 2.3142 2 0 Median NaN NaN NaN 0 0 Median 32222000 13070000 19152000 32222000 13070000 19152000 0 0 0 2444 568 2509 6459;6460 10082;10083;10084;10085;10086;10087 10086 6 DYLHLPPEIVPATLR HFYWYLTNEGIQYLRDYLHLPPEIVPATLR DYLHLPPEIVPATLRRSRPETGRPRPKGLE R D Y L R R 1 1 0 1 0 0 1 0 1 1 3 0 0 0 3 0 1 0 1 1 0 0 15 0 1732.9512 P46783;F6U211;S4R435 P46783 81 95 RPS10;RPS10-NUDT3 40S ribosomal protein S10 yes no 2;3 3.8324E-05 76.759 4 4 1.2499 1.3544 21.829 8 Median 1.2565 1.3927 2.7789 4 0 Median 1.1853 1.0022 27.166 4 0 Median 297830000 131000000 166820000 272060000 118830000 153230000 25770000 12173000 13597000 2445 1573 2510 6461;6462;6463;6464;6465;6466;6467;6468 10088;10089;10090;10091;10092;10093;10094;10095;10096;10097;10098;10099;10100;10101 10090 14 DYLHYIR VVTKMKMQRTIVIRRDYLHYIRKYNRFEKR QRTIVIRRDYLHYIRKYNRFEKRHKNMSVH R D Y I R K 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 978.49232 P62280;M0QZC5;M0R1H5 P62280 91 97 RPS11 40S ribosomal protein S11 yes no 2 0.015104 99.384 2 2 0.91246 0.91601 6.7238 4 Median 0.83305 0.97078 0.83781 2 0 Median 0.99496 0.86456 0.80141 2 0 Median 697370000 371400000 325970000 463860000 252060000 211800000 233510000 119340000 114170000 2446 1641 2511 6469;6470;6471;6472 10102;10103;10104;10105;10106;10107;10108 10103 7 DYLLMEEEFIR HTQCRLKLLKLERIKDYLLMEEEFIRNQEQ ERIKDYLLMEEEFIRNQEQMKPLEEKQEEE K D Y I R N 0 1 0 1 0 0 3 0 0 1 2 0 1 1 0 0 0 0 1 0 0 0 11 0 1456.6908 Q53XL8;Q53HB3;P62191 Q53XL8 70 80 PSMC1 26S protease regulatory subunit 4 yes no 2 0.00036265 85.29 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17062000 0 17062000 17062000 0 17062000 0 0 0 2447 1634 2512 6473;6474 10109;10110;10111 10110 1415 3 DYLLSESEDEGDNDGERK LLALSQQEELADLPKDYLLSESEDEGDNDG LSESEDEGDNDGERKHQKLLEAISSLDGKN K D Y R K H 0 1 1 4 0 0 4 2 0 0 2 1 0 0 0 2 0 0 1 0 0 0 18 1 2069.8662 Q9BVJ6;O60531 Q9BVJ6 25 42 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2;3 3.5E-16 116.84 3 2 1.9572 1.8964 12.527 4 Median 1.5205 1.6647 13.327 2 0 Median 2.3282 1.9754 0.66498 2 0 Median 34908000 8454700 26454000 28779000 6414600 22364000 6129600 2040100 4089600 2448 2008 2513 6475;6476;6477;6478;6479 10112;10113;10114;10115;10116;10117;10118;10119;10120;10121;10122 10120 11 DYLSPVLADLAQR QVLEPLMNLEVTVARDYLSPVLADLAQRRG ARDYLSPVLADLAQRRGNIQEIQTRQDNKV R D Y Q R R 2 1 0 2 0 1 0 0 0 0 3 0 0 0 1 1 0 0 1 1 0 0 13 0 1459.7671 A0A024RAJ7;A0A024RAK1;Q969S9 A0A024RAJ7 652 664 GFM2 Ribosome-releasing factor 2, mitochondrial yes no 2 0.0013564 76.143 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2456000 0 2456000 2456000 0 2456000 0 0 0 2449 307 2514 6480 10123;10124 10123 2 DYNTALSLHK ENRTRYAFVMFKTLKDYNTALSLHKTVLQY FKTLKDYNTALSLHKTVLQYRPVHIDPISR K D Y H K T 1 0 1 1 0 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1160.5826 B9ZVT1;Q8IXT5 B9ZVT1 336 345 RBM12B RNA-binding protein 12B yes no 2 0.055405 35.541 1 1.0538 0.87371 NaN 1 Median NaN NaN NaN 0 0 Median 1.0538 0.87371 NaN 1 0 Median 1764200 897590 866610 0 0 0 1764200 897590 866610 2450 1122 2515 6481 10125 10125 1 DYQELMNTK DALQQAKEDLARLLRDYQELMNTKLALDLE LARLLRDYQELMNTKLALDLEIATYRTLLE R D Y T K L 0 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 9 0 1140.5121 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 464 472 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.4419E-11 133.12 1 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85981000 85981000 0 58863000 58863000 0 27118000 27118000 0 + 2451 1308;1309 2516;2517 6482;6483;6484;6485;6486 10126;10127;10128;10129;10130 10126 991 5 DYQELMNVK EALQQAKEDLARLLRDYQELMNVKLALDVE LARLLRDYQELMNVKLALDVEIATYRKLLE R D Y V K L 0 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 9 0 1138.5329 CON__P35908;P35908;Q01546;CON__Q01546;H0YID6;CON__Q5XKE5;Q5XKE5 CON__P35908 468 476 KRT2;KRT76;KRT79 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 79 no no 2 0.001563 75.213 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19257000 19257000 0 18239000 18239000 0 1017600 1017600 0 + 2452 1166;1175 2518 6487;6488;6489 10131;10132;10133 10131 886 3 DYSAPVNFISAGLK DSDDERPSFGGKRARDYSAPVNFISAGLKK RDYSAPVNFISAGLKKGAAEEAESEDSDDE R D Y L K K 2 0 1 1 0 0 0 1 0 1 1 1 0 1 1 2 0 0 1 1 0 0 14 0 1480.7562 Q8N523;A0A024R1I7;Q9UBB9;B4DSX8;F6UKU9;F6SQZ1;F6XM96 Q8N523 73 86 TFIP11 Tuftelin-interacting protein 11 yes no 2 0.054404 24.276 1 1.2411 1.0499 NaN 1 Median NaN NaN NaN 0 0 Median 1.2411 1.0499 NaN 1 0 Median 1183200 516020 667160 0 0 0 1183200 516020 667160 2453 77 2519 6490 10134 10134 1 DYSDHPSGGSYR PSRGYSDRDGYGRDRDYSDHPSGGSYRDSY RDRDYSDHPSGGSYRDSYESYGW_______ R D Y Y R D 0 1 0 2 0 0 0 2 1 0 0 0 0 0 1 3 0 0 2 0 0 0 12 0 1339.5429 H0Y6E7;H3BT71;P38159;B4E352;Q2VIN3;Q96E39;B3KRG5;H3BUY5 H0Y6E7 273 284 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 2 1.2608E-29 172.1 1 1.3045 1.3368 NaN 1 Median 1.3045 1.3368 NaN 1 0 Median NaN NaN NaN 0 0 Median 19194000 7603100 11591000 19194000 7603100 11591000 0 0 0 2454 1284 2520 6491 10135;10136 10136 2 DYSLLPLLAAAPQVGEK NSSTIIQNPVETPKKDYSLLPLLAAAPQVG SLLPLLAAAPQVGEKIAFKLLELTSSYSPD K D Y E K I 3 0 0 1 0 1 1 1 0 0 4 1 0 0 2 1 0 0 1 1 0 0 17 0 1783.972 P38432 P38432 460 476 COIL Coilin yes yes 2 6.4793E-07 94.191 2 0.81123 0.8338 4.5482 2 Median 0.81123 0.8338 4.5482 2 0 Median NaN NaN NaN 0 0 Median 25005000 13441000 11564000 25005000 13441000 11564000 0 0 0 2455 1552 2521 6492;6493 10137;10138;10139;10140 10140 4 DYTYEELLNR SFSNQTGPAWAGSERDYTYEELLNRVFNIM AGSERDYTYEELLNRVFNIMREKNPDMVAG R D Y N R V 0 1 1 1 0 0 2 0 0 0 2 0 0 0 0 0 1 0 2 0 0 0 10 0 1314.6092 Q6IBR8;B5BU01;P20042;Q96I16 Q6IBR8 173 182 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 2 0.0016073 72.879 2 0.7089 0.59855 5.3054 2 Median NaN NaN NaN 0 0 Median 0.7089 0.59855 5.3054 2 0 Median 7351200 3698600 3652600 0 0 0 7351200 3698600 3652600 2456 1073 2522 6494;6495 10141;10142;10143 10143 3 DYVAPTANLDQK AAERFAKERRLRIWRDYVAPTANLDQKDKQ IWRDYVAPTANLDQKDKQFVAKVMQVLNAD R D Y Q K D 2 0 1 2 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 12 0 1333.6514 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8 A0A140VK49 328 339 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 2.3371E-08 120.09 2 1 1.4866 1.6765 36.975 3 Plateau 1.4752 1.6205 4.8088 2 0 Median 1.0848 0.85641 NaN 1 0 Median 99997000 40899000 59098000 94674000 38208000 56466000 5323800 2691300 2632500 2457 618 2523 6496;6497;6498 10144;10145;10146;10147 10146 4 DYVDLFR SGEVRTGKWKVPTYKDYVDLFRHLLSSDQM KWKVPTYKDYVDLFRHLLSSDQMMDSILAD K D Y F R H 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 926.44978 P78527;B4DL41 P78527 526 532 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.038498 60.358 1 0.62045 0.63512 NaN 1 Median 0.62045 0.63512 NaN 1 0 Median NaN NaN NaN 0 0 Median 35843000 19554000 16288000 35843000 19554000 16288000 0 0 0 2458 1665 2524 6499 10148;10149 10148 2 DYYQTLGLAR ______________________________ ______________________________ K D Y A R G 1 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 1 0 2 0 0 0 10 0 1198.5982 Q6FI51;Q6FHS4;P25685;B4DKK9 Q6FI51 4 13 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 0.041181 38.303 1 0.47794 0.47997 NaN 1 Median 0.47794 0.47997 NaN 1 0 Median NaN NaN NaN 0 0 Median 9200700 5058600 4142200 9200700 5058600 4142200 0 0 0 2459 1517 2525 6500 10150 10150 1 EAAAAAAAAHQQALR AEQEKKAAALRLKEKEAAAAAAAAHQQALR EAAAAAAAAHQQALREESGAGDKG______ K E A L R E 9 1 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 15 0 1448.7484 A0A1C7CYX1 A0A1C7CYX1 1076 1090 yes yes 2 0.0002215 66.056 2 0.89293 0.92207 46.286 2 Median 0.89293 0.92207 46.286 2 0 Median NaN NaN NaN 0 0 Median 10077000 5102700 4973900 10077000 5102700 4973900 0 0 0 2460 638 2526 6501;6502 10151;10152 10151 2 EAAENSLVAYK YHRYLAEFATGNDRKEAAENSLVAYKAASD NDRKEAAENSLVAYKAASDIAMTELPPTHP K E A Y K A 3 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1193.5928 V9HW98;P62258;G9K389;G9K388;B7ZA86;K7EM20 V9HW98 143 153 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 2 1.3191E-05 107.57 1 1 1.6257 1.521 14.205 2 Median 1.6083 1.6817 NaN 1 0 Median 1.6432 1.3756 NaN 1 0 Median 21530000 8390800 13139000 19324000 7496700 11827000 2206500 894130 1312400 2461 1637 2527 6503;6504 10153;10154;10155 10153 3 EAAFDDAVEER ______________________________ MADKEAAFDDAVEERVINEEYKIWKKNTPF K E A E R V 3 1 0 2 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 11 0 1250.5415 Q09028;E9PNS2;E9PIC4;E9PNS6 Q09028 5 15 RBBP4 Histone-binding protein RBBP4 yes no 2 2.7331E-05 102.06 2 2 1.1633 1.1646 27.158 4 Median 0.78074 0.91506 2.5636 2 0 Median 1.6954 1.4636 0.78039 2 0 Median 703110000 383650000 319470000 628160000 357340000 270820000 74950000 26308000 48642000 2462 1695 2528 6505;6506;6507;6508 10156;10157;10158;10159;10160;10161;10162;10163;10164;10165 10159 10 EAAGTTAAAGTGGATEQPPR ______________________________ TAAAGTGGATEQPPRHREHKKHKHRSGGSG K E A P R H 6 1 0 0 0 1 2 4 0 0 0 0 0 0 2 0 4 0 0 0 0 0 20 0 1812.8602 O43290;E9PQI8;B4DP43 O43290 12 31 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 8.968E-14 111.83 2 0.87225 0.87923 13.471 2 Median 0.87225 0.87923 13.471 2 0 Median NaN NaN NaN 0 0 Median 22551000 11980000 10572000 22551000 11980000 10572000 0 0 0 2463 1384 2529 6509;6510 10166;10167;10168;10169 10168 4 EAALAEVADEK GKEADAEANHREAGKEAALAEVADEKMLSG EAGKEAALAEVADEKMLSGLTKDLQRSLPP K E A E K M 4 0 0 1 0 0 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1144.5612 A8K4T8;Q15003;B4DRG7;E9PHA2;H7C415 A8K4T8 675 685 NCAPH Condensin complex subunit 2 yes no 2 1.548E-10 135.55 2 2 0.81736 0.9652 5.6326 2 Median 0.81736 0.9652 5.6326 2 0 Median NaN NaN NaN 0 0 Median 1114200000 578110000 536060000 1056100000 578110000 477960000 58093000 0 58093000 2464 740 2530 6511;6512;6513;6514 10170;10171;10172;10173;10174;10175 10172 6 EAALGAGFSDK FGTVIQEVKTSNVAREAALGAGFSDKTPAH NVAREAALGAGFSDKTPAHTVTMACISANQ R E A D K T 3 0 0 1 0 0 1 2 0 0 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1064.5138 P55084;B4DY96;B5MD38;F5GZQ3;D6W539;B4DDC9;C9JEY0;C9JE81;Q92799 P55084 118 128 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.013026 47.559 1 1.1508 1.1849 NaN 1 Median 1.1508 1.1849 NaN 1 0 Median NaN NaN NaN 0 0 Median 32462000 17324000 15138000 32462000 17324000 15138000 0 0 0 2465 1615 2531 6515 10176 10176 1 EAALSQEQIQILAK ETKQNLTGLCQKVCKEAALSQEQIQILAKY KEAALSQEQIQILAKYSAADCPLSFLISEK K E A A K Y 3 0 0 0 0 3 2 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 14 0 1540.8461 A8K4Q6;O14867 A8K4Q6 627 640 BACH1 Transcription regulator protein BACH1 yes no 2 1.4241E-09 108.47 1 2 2.4001 1.8776 NaN 1 Median NaN NaN NaN 0 0 Median 2.4001 1.8776 NaN 1 0 Median 13466000 979100 12487000 7616300 0 7616300 5849600 979100 4870500 2466 739 2532 6516;6517;6518 10177;10178;10179 10177 3 EAALSTALSEK AQARLKDLEALLNSKEAALSTALSEKRTLE LNSKEAALSTALSEKRTLEGELHDLRGQVA K E A E K R 3 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 11 0 1118.5819 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 145 155 LMNA Prelamin-A/C;Lamin-A/C yes no 1;2 0.00032579 87.298 3 2 1.4119 1.4648 25.374 5 Median 1.3476 1.5818 18.611 3 0 Median 1.4176 1.138 0.65257 2 0 Median 699030000 321650000 377380000 662390000 306570000 355820000 36638000 15079000 21558000 2467 1440 2533 6519;6520;6521;6522;6523 10180;10181;10182;10183;10184;10185;10186;10187 10181 8 EAALTSEEVGADLEQVEVLQK LFREANELQQWINEKEAALTSEEVGADLEQ EEVGADLEQVEVLQKKFDDFQKDLKANESR K E A Q K K 3 0 0 1 0 2 5 1 0 0 3 1 0 0 0 1 1 0 0 3 0 0 21 0 2257.1325 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16;B4DGT1;B4DTV8 A0A0D9SF54 1091 1111 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 4.7076E-09 85.457 2 1 1.7387 1.812 78.502 3 Median 1.5335 1.6011 17.497 2 0 Median 7.5153 6.1313 NaN 1 0 Median 28091000 11039000 17051000 22025000 10277000 11748000 6065700 762330 5303400 2468 523 2534 6524;6525;6526 10188;10189;10190 10188 3 EAALVQQEEEK RLARVNEQRMKAAEKEAALVQQEEEKAEQR AAEKEAALVQQEEEKAEQRKRARAEKKALK K E A E K A 2 0 0 0 0 2 4 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1272.6198 Q15020;B4DYA2;B4DRG9;F8VV04;B4E3R6 Q15020 587 597 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 2.7897E-12 128.36 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15745000 0 15745000 15745000 0 15745000 0 0 0 2469 1748 2535 6527;6528 10191;10192 10191 2 EAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLR EFFEVANDVIPNLLKEAASLLEAGEERPGE GSALQDPECFAHLLRFYDGICKWEEGSPTP K E A L R F 5 2 0 1 1 5 6 4 1 0 5 0 0 1 2 4 1 0 0 0 0 0 38 1 4095.9192 A0A024R570;A0A024R5E3;A0A024R5D2;O00255;Q9UE24 A0A024R570 343 380 MEN1 Menin yes no 4 0.00014538 25.709 2 1.3816 1.2127 4.7568 2 Median NaN NaN NaN 0 0 Median 1.3816 1.2127 4.7568 2 0 Median 15682000 6714900 8967600 0 0 0 15682000 6714900 8967600 2470 171 2536 6529;6530 10193;10194;10195;10196;10197;10198 10196 6 EAATQAQQTLGSTIDK ARETLKNSALSAQLREAATQAQQTLGSTID AATQAQQTLGSTIDKATGILLYGLASRLRD R E A D K A 3 0 0 1 0 3 1 1 0 1 1 1 0 0 0 1 3 0 0 0 0 0 16 0 1660.8268 Q53HS0;P47897;A8K3A8;B4DNN3;B4DTH6;A0A0U1RQM8;A0A0U1RQU2;B7Z840;A0A0U1RQT0;C9J165;F2Z2V6;I3QNU8 Q53HS0 35 50 QARS Glutamine--tRNA ligase yes no 2 3.8275E-106 216.68 2 1 1.2206 1.1126 68.422 2 Median 1.7222 1.8049 NaN 1 0 Median 0.86505 0.68583 NaN 1 0 Median 40313000 11186000 29127000 36027000 8975300 27051000 4286100 2210800 2075300 2471 1575 2537 6531;6532;6533 10199;10200;10201;10202 10199 4 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR GPNPWMLRSCTSDTKEAATQEDPEQLPELE EGEERPVAEEEILLREFEERRSLRKRSELS K E A L R E 4 2 0 1 0 2 12 2 1 1 4 0 0 0 3 2 1 0 0 2 0 0 37 1 4114.9455 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 386 422 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 4 8.7726E-47 102.53 2 2 1.2888 1.2205 11.637 4 Median 1.0862 1.2205 0.37383 2 0 Median 1.5489 1.3404 17.842 2 0 Median 309040000 140220000 168830000 147400000 77163000 70242000 161640000 63052000 98584000 2472 2008 2538 6534;6535;6536;6537 10203;10204;10205;10206;10207;10208;10209;10210;10211 10211 9 EAAWAITNATSGGSAEQIK ALISILQTAEFRTRKEAAWAITNATSGGSA AITNATSGGSAEQIKYLVELGCIKPLCDLL K E A I K Y 5 0 1 0 0 1 2 2 0 2 0 1 0 0 0 2 2 1 0 0 0 0 19 0 1903.9276 Q5BKZ2;P52294;B3KXZ2;B3KWR2 Q5BKZ2 399 417 KPNA1 Importin subunit alpha;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes no 2 0.0050271 48.704 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2473 1600 2539 6538 10212 10212 1 EAAWAITNATSGGTPEQIR VLIEILQKAEFRTRKEAAWAITNATSGGTP AITNATSGGTPEQIRYLVSLGCIKPLCDLL K E A I R Y 4 1 1 0 0 1 2 2 0 2 0 0 0 0 1 1 3 1 0 0 0 0 19 0 1971.965 B4DII5;B4DWX3;O60684;O15131 B4DII5 394 412 KPNA6;KPNA5 Importin subunit alpha;Importin subunit alpha-7;Importin subunit alpha-6 yes no 2 2.3758E-06 81.619 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2474 980 2540 6539;6540;6541 10213;10214;10215 10215 3 EACGVIVELIK AKQAASGLVGQENAREACGVIVELIKSKKM ENAREACGVIVELIKSKKMAGRAVLLAGPP R E A I K S 1 0 0 0 1 0 2 1 0 2 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1229.669 B5BUB1;Q9Y265 B5BUB1 47 57 RUVBL1 RuvB-like 1 yes no 2 0.00071156 73.067 1 2 1.1571 0.90384 13.238 3 Median 0.7487 0.75578 NaN 1 0 Median 1.1705 0.94053 5.6278 2 0 Median 52112000 26007000 26105000 28390000 15892000 12498000 23722000 10114000 13608000 2475 1076 2541 6542;6543;6544 10216;10217;10218;10219 10219 4 EADGILKPLPK NVLEIWNLVFIQYNREADGILKPLPKKSID QYNREADGILKPLPKKSIDTGMGLERLVSV R E A P K K 1 0 0 1 0 0 1 1 0 1 2 2 0 0 2 0 0 0 0 0 0 0 11 1 1179.6863 P49588 P49588 225 235 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.00065726 99.136 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5290200 0 5290200 5290200 0 5290200 0 0 0 2476 1583 2542 6545 10220 10220 1 EADGSETPEPFAAEAK VTVMLSGIKCPTFRREADGSETPEPFAAEA ADGSETPEPFAAEAKFFTESRLLQRDVQII R E A A K F 4 0 0 1 0 0 4 1 0 0 0 1 0 1 2 1 1 0 0 0 0 0 16 0 1647.7264 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8 A0A140VK49 234 249 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 1.9809E-44 164.48 2 1.64 1.7597 7.9066 2 Median 1.64 1.7597 7.9066 2 0 Median NaN NaN NaN 0 0 Median 70076000 27722000 42354000 70076000 27722000 42354000 0 0 0 2477 618 2543 6546;6547 10221;10222;10223;10224 10222 4 EADLDVATITK VTEFEQRHHCLELAKEADLDVATITKTVVE ELAKEADLDVATITKTVVENIRKKDNGEFS K E A T K T 2 0 0 2 0 0 1 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1174.6081 P57740;B3KMK0 P57740 627 637 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.005851 64.374 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20790000 20790000 0 20790000 20790000 0 0 0 0 2478 1621 2544 6548;6549 10225;10226 10225 2 EADQTHAQNFSSAVK RQLRALLLSHQFKRREADQTHAQNFSSAVK EADQTHAQNFSSAVKSPVQVILLRALAFLA R E A V K S 3 0 1 1 0 2 1 0 1 0 0 1 0 1 0 2 1 0 0 1 0 0 15 0 1631.754 H0Y4R5;Q5SNT2 H0Y4R5 105 119 TMEM201 Transmembrane protein 201 yes no 2;3 1.3285E-15 119.69 3 1.1338 1.1677 13.744 2 Median 1.1338 1.1677 13.744 2 0 Median NaN NaN NaN 0 0 Median 26256000 11374000 14881000 26256000 11374000 14881000 0 0 0 2479 1283 2545 6550;6551;6552 10227;10228;10229 10229 3 EAEAAEAEEPWGEEAR RFEGQVRQKVRIVSREAEAAEAEEPWGEEA AEAAEAEEPWGEEAREGRRRGPRRESKPEE R E A A R E 5 1 0 0 0 0 7 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 16 0 1772.7489 A0A024R570;A0A024R5E3;E7EN32;A0A024R5D2;O00255;Q9UE24 A0A024R570 426 441 MEN1 Menin yes no 2 0.00015478 71.085 2 1.2392 1.0759 14.444 2 Median NaN NaN NaN 0 0 Median 1.2392 1.0759 14.444 2 0 Median 6588000 2703800 3884200 0 0 0 6588000 2703800 3884200 2480 171 2546 6553;6554 10230;10231;10232 10232 3 EAEAAIYHLQLFEELR DYPLEAVRMQHLIAREAEAAIYHLQLFEEL AEAAIYHLQLFEELRRLAPITSDPTEATAV R E A L R R 3 1 0 0 0 1 4 0 1 1 3 0 0 1 0 0 0 0 1 0 0 0 16 0 1930.9789 V9HWB8;P14618;B4DNK4;Q8WUW7;Q9UKK4;Q9UN47;Q9NYI7 V9HWB8 384 399 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 3 4.3131E-05 76.151 2 1.9841 1.9835 1.6814 2 Median 1.9841 1.9835 1.6814 2 0 Median NaN NaN NaN 0 0 Median 14922000 4307800 10614000 14922000 4307800 10614000 0 0 0 2481 1481 2547 6555;6556 10233;10234 10233 2 EAEEVMDAGCQESAGPER HQPSDEVGTSIEHPREAEEVMDAGCQESAG EVMDAGCQESAGPERITDQEASENHVAATG R E A E R I 3 1 0 1 1 1 5 2 0 0 0 0 1 0 1 1 0 0 0 1 0 0 18 0 1963.7888 Q96F88;Q99575 Q96F88 768 785 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 4.2406E-42 153.39 4 0.41671 0.42097 NaN 1 Median 0.41671 0.42097 NaN 1 0 Median NaN NaN NaN 0 0 Median 23579000 20572000 3007200 23579000 20572000 3007200 0 0 0 2482 1965 2548 6557;6558;6559;6560 10235;10236;10237;10238 10238 1810 4 EAELLEPLMPAIR EFIRGSTLRFLCKLKEAELLEPLMPAIRAC LKEAELLEPLMPAIRACLEHRHSYVRRNAV K E A I R A 2 1 0 0 0 0 3 0 0 1 3 0 1 0 2 0 0 0 0 0 0 0 13 0 1480.796 P53618;E9PP73 P53618 129 141 COPB1 Coatomer subunit beta yes no 2 0.00065544 71.614 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6088200 0 6088200 6088200 0 6088200 0 0 0 2483 1606 2549 6561 10239 10239 1394 1 EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK EGAELMESVMDVVRKEAESCDCLQGFQLTH GGGTGSGMGTLLLSKIREEYPDRIINTFSI K E A S K I 1 0 0 1 2 2 2 7 1 0 6 1 1 1 0 4 3 0 0 0 0 0 32 0 3310.5268 Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00 Q3ZCM7 123 154 TUBB8 Tubulin beta-8 chain yes no 3 6.4416E-78 157.43 2 1.5471 1.3007 0.37236 2 Median NaN NaN NaN 0 0 Median 1.5471 1.3007 0.37236 2 0 Median 107260000 40840000 66418000 0 0 0 107260000 40840000 66418000 2484 1778 2550 6562;6563 10240;10241;10242;10243;10244 10242 5 EAEYEESVAK TREPLILEEEREMEREAEYEESVAKEDQPA REMEREAEYEESVAKEDQPAVPGETQGDSY R E A A K E 2 0 0 0 0 0 4 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 10 0 1153.5139 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 720 729 WDR3 WD repeat-containing protein 3 yes no 2 5.1419E-10 135.79 2 2 1.0906 1.0161 1.9616 4 Median 0.9044 1.0184 3.2338 2 0 Median 1.2988 1.0161 1.0177 2 0 Median 197990000 101160000 96823000 182910000 94778000 88133000 15076000 6385900 8690000 2485 1827 2551 6564;6565;6566;6567 10245;10246;10247;10248;10249;10250;10251;10252;10253 10248 9 EAFAGDDVIR ELEDEEERNHRQMIKEAFAGDDVIRDFLKE RQMIKEAFAGDDVIRDFLKEKREAVEASKP K E A I R D 2 1 0 2 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1091.5247 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 597 606 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C no no 2 1.5861E-22 149.57 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90035000 0 90035000 86102000 0 86102000 3933000 0 3933000 2486 2008;393 2552 6568;6569;6570;6571;6572 10254;10255;10256;10257;10258;10259 10257 6 EAFAGDDVIRDFLK ELEDEEERNHRQMIKEAFAGDDVIRDFLKE KEAFAGDDVIRDFLKEKREAVEASKPKDVD K E A L K E 2 1 0 3 0 0 1 1 0 1 1 1 0 2 0 0 0 0 0 1 0 0 14 1 1594.7991 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 597 610 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C no no 2;3 0.00065157 81.709 3 2 1.146 1.2338 6.892 5 Median 1.0797 1.1629 6.7695 3 0 Median 1.5216 1.2894 6.2356 2 0 Median 70784000 33730000 37054000 52648000 25959000 26689000 18137000 7771400 10365000 2487 2008;393 2553 6573;6574;6575;6576;6577 10260;10261;10262;10263;10264;10265;10266;10267;10268;10269 10264 10 EAFEQPQTSSTPPR QSKGKKRNPGLKIPKEAFEQPQTSSTPPRD KEAFEQPQTSSTPPRDLDSKACISIGNQNF K E A P R D 1 1 0 0 0 2 2 0 0 0 0 0 0 1 3 2 2 0 0 0 0 0 14 0 1573.7372 B5BU16;A8K3Y2;P52564;A0A0A0MRF7;K7EIW3;Q6MZH7 B5BU16 18 31 MAP2K6;DKFZp686N0154 Dual specificity mitogen-activated protein kinase kinase 6 yes no 2 0.00072171 77.062 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8522700 0 8522700 8522700 0 8522700 0 0 0 2488 728 2554 6578 10270 10270 1 EAFFHQELPLYIPPPIFSR HTSMYDKVLMLRPEKEAFFHQELPLYIPPP HQELPLYIPPPIFSRLDAPVDYFYRPETQH K E A S R L 1 1 0 0 0 1 2 0 1 2 2 0 0 3 4 1 0 0 1 0 0 0 19 0 2300.1994 Q9Y5Q8;Q5T7U1;Q5T7U0;Q5T7U4;B7Z1V3 Q9Y5Q8 157 175 GTF3C5 General transcription factor 3C polypeptide 5 yes no 3 6.968E-05 45.704 1 1.2112 1.2414 NaN 1 Median 1.2112 1.2414 NaN 1 0 Median NaN NaN NaN 0 0 Median 6549600 2283900 4265700 6549600 2283900 4265700 0 0 0 2489 2149 2555 6579 10271;10272 10272 2 EAFGFIER KKKQARCQGVVCAMKEAFGFIERGDVVKEI GVVCAMKEAFGFIERGDVVKEIFFHYSEFK K E A E R G 1 1 0 0 0 0 2 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 8 0 967.47633 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;E9PNG3 Q9GZV0 164 171 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 0.014111 71.501 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7749100 7749100 0 7749100 7749100 0 0 0 0 2490 42 2556 6580;6581 10273;10274 10273 2 EAFLQEVWK KLWREQGLSRHQLGREAFLQEVWKWKEEKG RHQLGREAFLQEVWKWKEEKGDRIYHQLKK R E A W K W 1 0 0 0 0 1 2 0 0 0 1 1 0 1 0 0 0 1 0 1 0 0 9 0 1148.5866 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 410 418 VARS Valine--tRNA ligase yes no 2 0.0015079 84.498 1 0.64293 0.65985 NaN 1 Median 0.64293 0.65985 NaN 1 0 Median NaN NaN NaN 0 0 Median 11750000 8033200 3717100 11750000 8033200 3717100 0 0 0 2491 363 2557 6582 10275;10276 10275 2 EAFQLFDR ______________________________ DQTAEFKEAFQLFDRTGDGKILYSQCGDVM K E A D R T 1 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1024.4978 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;G3V1Y7 F8W1R7 14 21 MYL6 Myosin light polypeptide 6 yes no 2 0.00062584 129.72 2 2 1.5638 1.6182 5.0113 4 Linear 1.4036 1.6105 1.3496 2 0 Median 1.7501 1.4803 1.5666 2 0 Median 304520000 133150000 171370000 290780000 128380000 162390000 13739000 4764800 8974300 2492 1101 2558 6583;6584;6585;6586 10277;10278;10279;10280;10281;10282;10283;10284 10280 8 EAFSLFDK ______________________________ EQIAEFKEAFSLFDKDGDGTITTKELGTVM K E A D K D 1 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 0 0 0 0 0 0 8 0 955.4651 Q9BRL5;P0DP25;P0DP24;P0DP23;B4DJ51;B2RDW0;H0Y7A7;F8WBR5;M0QZ52;G3V479;E7ETZ0;E7EMB3;A8K1M2;P27482 Q9BRL5 15 22 CALM3;CALM2;CALM1;CALML3 Calmodulin-like protein 3 yes no 2 0.023225 56.659 1 1.1115 1.2567 NaN 1 Median 1.1115 1.2567 NaN 1 0 Median NaN NaN NaN 0 0 Median 84806000 40619000 44187000 84806000 40619000 44187000 0 0 0 2493 890 2559 6587 10285;10286 10286 2 EAFTADGDQVFAGR ARAVMQSQKPPKNCREAFTADGDQVFAGRY REAFTADGDQVFAGRYYSSENTRPKFLSRD R E A G R Y 3 1 0 2 0 1 1 2 0 0 0 0 0 2 0 0 1 0 0 1 0 0 14 0 1482.6739 Q96SB8;C9JMN1 Q96SB8 635 648 SMC6 Structural maintenance of chromosomes protein 6 yes no 2 0.024077 42.556 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5225400 5225400 0 5225400 5225400 0 0 0 0 2494 1989 2560 6588 10287 10287 1 EAGAGGLAIAVEGPSK RAEAGVPAEFSIWTREAGAGGLAIAVEGPS AGAGGLAIAVEGPSKAEISFEDRKDGSCGV R E A S K A 4 0 0 0 0 0 2 4 0 1 1 1 0 0 1 1 0 0 0 1 0 0 16 0 1425.7464 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5C6;Q2VP91 P21333 2265 2280 FLNA;FLJ00119 Filamin-A yes no 2 1.407E-13 125.03 1 1.8873 2.0477 NaN 1 Median 1.8873 2.0477 NaN 1 0 Median NaN NaN NaN 0 0 Median 45441000 16828000 28613000 45441000 16828000 28613000 0 0 0 2495 1504 2561 6589 10288;10289 10288 2 EAGAGGLSIAVEGPSK RGEAGVPAEFSIWTREAGAGGLSIAVEGPS AGAGGLSIAVEGPSKAEITFDDHKNGSCGV R E A S K A 3 0 0 0 0 0 2 4 0 1 1 1 0 0 1 2 0 0 0 1 0 0 16 0 1441.7413 O75369;A0A024R321;Q68CT4;E7EN95 O75369 2220 2235 FLNB;DKFZp686A1668 Filamin-B no no 2 1.0638E-06 96.745 1 1 2.0233 1.8733 2.6868 2 Median 1.8188 1.8381 NaN 1 0 Median 2.2507 1.9092 NaN 1 0 Median 10074000 4113200 5960400 8595000 3470100 5124900 1478600 643130 835500 2496 1402 2562 6590;6591 10290;10291;10292 10290 3 EAGDFYYMAGNK ASETSGHQGYQGFRKEAGDFYYMAGNKDPV FRKEAGDFYYMAGNKDPVTTGTPQPPQRRP K E A N K D 2 0 1 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 2 0 0 0 12 0 1364.5707 W5ZR30;Q9UGU0;I3L1M7 W5ZR30 85 96 TCF20 Transcription factor 20 yes no 2 0.028632 40.994 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2497 2100 2563 6592 10293 10293 1923 1 EAGDVCYADVQK LPPSGSWQDLKDHMREAGDVCYADVQKDGV HMREAGDVCYADVQKDGVGMVEYLRKEDME R E A Q K D 2 0 0 2 1 1 1 1 0 0 0 1 0 0 0 0 0 0 1 2 0 0 12 0 1353.5871 Q13242;H0YIB4 Q13242 133 144 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 2.7608E-05 99.53 1 2 1.1318 0.90621 4.8431 2 Median NaN NaN NaN 0 0 Median 1.1318 0.90621 4.8431 2 0 Median 14229000 2603800 11625000 8382700 0 8382700 5846400 2603800 3242600 2498 1709 2564 6593;6594;6595 10294;10295;10296;10297 10294 4 EAGDVCYADVYR LPPSGSWQDLKDHMREAGDVCYADVYRDGT HMREAGDVCYADVYRDGTGVVEFVRKEDMT R E A Y R D 2 1 0 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 2 2 0 0 12 0 1416.598 J3KTL2;Q07955;Q59FA2;A8K1L8;J3KSR8;B7Z570 J3KTL2 143 154 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 9.786E-18 140.16 2 2 0.79548 0.79892 52.519 4 Median 1.0812 1.2466 0.46985 2 0 Median 0.58973 0.50225 3.1912 2 0 Median 381580000 183080000 198500000 333080000 153390000 179690000 48506000 29694000 18811000 2499 1333 2565 6596;6597;6598;6599 10298;10299;10300;10301;10302;10303;10304;10305;10306;10307 10298 10 EAGEDEEGFLSK GGSTMDSSAGSKARREAGEDEEGFLSKLKK ARREAGEDEEGFLSKLKKMFTS________ R E A S K L 1 0 0 1 0 0 4 2 0 0 1 1 0 1 0 1 0 0 0 0 0 0 12 0 1309.5674 Q59E88;Q53G26;Q96EY1 Q59E88 460 471 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 9.1905E-06 108.43 2 2 1.2042 1.0679 35.692 4 Median 1.4162 1.4527 12.516 2 0 Median 1.0119 0.79949 9.9247 2 0 Median 47330000 20094000 27236000 41581000 17125000 24455000 5748800 2968800 2780100 2500 1786 2566 6600;6601;6602;6603 10308;10309;10310;10311 10309 4 EAGELKPEEEITVGPVQK RSLGEIPIVESEIKKEAGELKPEEEITVGP ELKPEEEITVGPVQKLVTEMGTYATQSALS K E A Q K L 1 0 0 0 0 1 5 2 0 1 1 2 0 0 2 0 1 0 0 2 0 0 18 1 1952.0102 P53618 P53618 496 513 COPB1 Coatomer subunit beta yes yes 3 3.6239E-08 82.707 2 1.6259 1.8996 2.4979 2 Median 1.6259 1.8996 2.4979 2 0 Median NaN NaN NaN 0 0 Median 53277000 19462000 33814000 53277000 19462000 33814000 0 0 0 2501 1606 2567 6604;6605 10312;10313 10312 2 EAGENAPVLSDDELVSMSVR MTTNPKPNKALKVKKEAGENAPVLSDDELV APVLSDDELVSMSVRELNQHLRGLTKEEVT K E A V R E 2 1 1 2 0 0 3 1 0 0 2 0 1 0 1 3 0 0 0 3 0 0 20 0 2116.9947 A0A024R804;A8WFP5;O60675 A0A024R804 16 35 MAFK Transcription factor MafK yes no 2 8.9722E-07 71.344 2 2 1.7827 1.7928 15.503 4 Median 1.7827 1.8831 7.8047 2 0 Median 1.8777 1.5798 18.752 2 0 Median 76911000 29291000 47620000 65603000 25542000 40061000 11308000 3749500 7558900 2502 239 2568;2569 6606;6607;6608;6609 10314;10315;10316;10317;10318;10319;10320 10315 179 7 EAGEQGDIEPR QRINIPPQRGPRPIREAGEQGDIEPRRMVR RPIREAGEQGDIEPRRMVRHPDSHQLFIGN R E A P R R 1 1 0 1 0 1 3 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 11 0 1199.5418 Q6FI03;Q5U0Q1;Q13283;B7Z8K4;Q6ZP53;Q32P45 Q6FI03 321 331 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2 0.013418 55.084 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6238900 0 6238900 6238900 0 6238900 0 0 0 2503 1710 2570 6610 10321 10321 1 EAGFGGGPNATITTSLK AWQAVEPSDIAACFREAGFGGGPNATITTS GFGGGPNATITTSLKSEGEEEEEEEEEEEE R E A L K S 2 0 1 0 0 0 1 4 0 1 1 1 0 1 1 1 3 0 0 0 0 0 17 0 1619.8155 P07199 P07199 386 402 CENPB Major centromere autoantigen B yes yes 2 5.1669E-45 166.62 2 2 1.8139 1.5323 12.371 4 Median 1.4592 1.5929 20.927 2 0 Median 1.9132 1.5323 2.469 2 0 Median 135610000 54656000 80956000 93083000 39764000 53319000 42529000 14892000 27636000 2504 1450 2571 6611;6612;6613;6614 10322;10323;10324;10325;10326;10327;10328;10329 10325 8 EAGGNYTPALTEQEVYAQVAR LEILHTYQKEQRNAKEAGGNYTPALTEQEV TPALTEQEVYAQVARLFKNQEDLLSEFGQF K E A A R L 4 1 1 0 0 2 3 2 0 0 1 0 0 0 1 0 2 0 2 2 0 0 21 0 2266.0866 Q96ST3 Q96ST3 344 364 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 2.1693E-11 96.734 1 0.69052 0.69729 NaN 1 Median 0.69052 0.69729 NaN 1 0 Median NaN NaN NaN 0 0 Median 10136000 7309300 2826600 10136000 7309300 2826600 0 0 0 2505 1990 2572 6615 10330 10330 1 EAGLSNAAFESDFK NALLPTLRKQYCTLKEAGLSNAAFESDFKE KEAGLSNAAFESDFKEIEHLVERKKVVVWA K E A F K E 3 0 1 1 0 0 2 1 0 0 1 1 0 2 0 2 0 0 0 0 0 0 14 0 1484.6783 B2R6H3;Q8NI77;Q4G194 B2R6H3 589 602 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 7.0893E-05 89.9 2 1 0.75987 0.7472 8.8431 3 Median 0.73478 0.73976 1.4142 2 0 Median 1.0515 0.86136 NaN 1 0 Median 40811000 25376000 15435000 38217000 24492000 13725000 2594500 883980 1710500 2506 842 2573 6616;6617;6618 10331;10332;10333 10332 3 EAGLVAQHPPAR KLKKERKKEERQRLREAGLVAQHPPARRSG RLREAGLVAQHPPARRSGAELALDYLCRWA R E A A R R 3 1 0 0 0 1 1 1 1 0 1 0 0 0 2 0 0 0 0 1 0 0 12 0 1244.6626 C9JQV0;Q9BRJ6;A0A024R836;H7C0T1;H7C2R9 C9JQV0 84 95 C7orf50;MGC11257 Uncharacterized protein C7orf50 yes no 2 0.00027855 82.287 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2507 1141 2574 6619 10334 10334 1 EAGNINQSLLTLGR SENIGRSGAVDKRAREAGNINQSLLTLGRV REAGNINQSLLTLGRVITALVERTPHVPYR R E A G R V 1 1 2 0 0 1 1 2 0 1 3 0 0 0 0 1 1 0 0 0 0 0 14 0 1484.7947 P52732;B2RAM6 P52732 284 297 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.00062534 77.867 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16078000 0 16078000 16078000 0 16078000 0 0 0 2508 1602 2575 6620 10335 10335 1 EAGNINQSLMTLR SERTNRTRAEGNRLREAGNINQSLMTLRTC LREAGNINQSLMTLRTCMDVLRENQMYGTN R E A L R T 1 1 2 0 0 1 1 1 0 1 2 0 1 0 0 1 1 0 0 0 0 0 13 0 1445.7297 H7BYN4;Q02241;H0YKQ5 H7BYN4 356 368 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 2.8901E-06 98.898 3 0.97874 1.005 NaN 1 Median 0.97874 1.005 NaN 1 0 Median NaN NaN NaN 0 0 Median 22968000 16453000 6514900 22968000 16453000 6514900 0 0 0 2509 1312 2576 6621;6622;6623 10336;10337;10338;10339 10338 996 4 EAGNINTSLHTLGR GSERCKDQKSGERLKEAGNINTSLHTLGRC KEAGNINTSLHTLGRCIAALRQNQQNRSKQ K E A G R C 1 1 2 0 0 0 1 2 1 1 2 0 0 0 0 1 2 0 0 0 0 0 14 0 1481.7587 O95235 O95235 426 439 KIF20A Kinesin-like protein KIF20A yes yes 2;3 1.1915E-09 110.08 1 4 1.2418 1.0313 3.394 4 Median NaN NaN NaN 0 0 Median 1.2418 1.0313 3.394 4 0 Median 92701000 53816000 38885000 23167000 23167000 0 69534000 30649000 38885000 2510 1421 2577 6624;6625;6626;6627;6628 10340;10341;10342;10343;10344;10345;10346 10340 7 EAGTDMQESQPTVGLDDETPQLLGPTHK EYETLAMPEGSQAGREAGTDMQESQPTVGL GLDDETPQLLGPTHKKKSKKKKKKKSNHQE R E A H K K 1 0 0 3 0 3 3 3 1 0 3 1 1 0 3 1 4 0 0 1 0 0 28 0 2993.3924 B4DZG2;A0A024R8C1;Q15361 B4DZG2 245 272 TTF1 Transcription termination factor 1 yes no 3 3.8674E-16 66.447 1 1.001 1.084 NaN 1 Median 1.001 1.084 NaN 1 0 Median NaN NaN NaN 0 0 Median 22088000 8978000 13110000 22088000 8978000 13110000 0 0 0 2511 247 2578 6629 10347;10348;10349 10348 186 3 EAGVEMGDEDDLSTPNEK PTLRLEYCEALAMLREAGVEMGDEDDLSTP VEMGDEDDLSTPNEKLLGHLVKEKYDTDFY R E A E K L 1 0 1 3 0 0 4 2 0 0 1 1 1 0 1 1 1 0 0 1 0 0 18 0 1934.8051 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 324 341 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.001909 49.929 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5674500 0 5674500 5674500 0 5674500 0 0 0 2512 610 2579 6630;6631 10350;10351 10350 462 2 EAGVFVPR NQASETAVAKNQALKEAGVFVPRSFDELGE AKNQALKEAGVFVPRSFDELGEIIQSVYED K E A P R S 1 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 2 0 0 8 0 873.47085 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 771 778 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.0080127 80.462 1 1.5147 1.5906 NaN 1 Median 1.5147 1.5906 NaN 1 0 Median NaN NaN NaN 0 0 Median 22972000 8756700 14215000 22972000 8756700 14215000 0 0 0 2513 89 2580 6632 10352 10352 1 EAGYPNYLIR NVYILKGMIDQISMKEAGYPNYLIRKFMFG QISMKEAGYPNYLIRKFMFGFPENWKEHID K E A I R K 1 1 1 0 0 0 1 1 0 1 1 0 0 0 1 0 0 0 2 0 0 0 10 0 1194.6033 Q6P0N0;G5E9K5 Q6P0N0 448 457 MIS18BP1 Mis18-binding protein 1 yes no 2 0.028964 43.218 2 1.2784 1.1026 0.62621 2 Median NaN NaN NaN 0 0 Median 1.2784 1.1026 0.62621 2 0 Median 8420700 3617300 4803500 0 0 0 8420700 3617300 4803500 2514 1849 2581 6633;6634 10353;10354 10354 2 EAHEPLAVADAK KINKQLKKVLKKIVKEAHEPLAVADAKLGG IVKEAHEPLAVADAKLGGVIKEKLNLSCIH K E A A K L 4 0 0 1 0 0 2 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1249.6303 Q9Y2X3;B3KN82;B4DUY3 Q9Y2X3 82 93 NOP58 Nucleolar protein 58 yes no 2;3 3.4499E-48 195.83 4 5 0.87772 0.92029 11.536 9 Median 0.82951 0.93948 10.047 4 0 Median 0.99594 0.83233 11.485 5 0 Median 1083700000 564680000 519010000 905620000 476800000 428820000 178070000 87877000 90189000 2515 2129 2582 6635;6636;6637;6638;6639;6640;6641;6642;6643 10355;10356;10357;10358;10359;10360;10361;10362;10363;10364;10365;10366;10367;10368 10355 14 EAHLPVIENK GWGETQGTFGEGLLKEAHLPVIENKVCNRN EGLLKEAHLPVIENKVCNRNEYLDGRVKPT K E A N K V 1 0 1 0 0 0 2 0 1 1 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1148.619 CON__P06868 CON__P06868 720 729 yes yes 2 0.013857 59.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11281000 11281000 0 11281000 11281000 0 0 0 0 + 2516 1157 2583 6644 10369 10369 1 EAHQLFLEPEVLDPESVELK LDPNKYPVPENWLHKEAHQLFLEPEVLDPE FLEPEVLDPESVELKWSEPNEEELIKFMCG K E A L K W 1 0 0 1 0 1 5 0 1 0 4 1 0 1 2 1 0 0 0 2 0 0 20 0 2321.1791 Q6FHX6;P39748;B4DWZ4;I3L3E9 Q6FHX6 278 297 FEN1 Flap endonuclease 1 yes no 3 1.1481E-06 60.561 2 2 0.92702 0.87788 70.879 4 Median 1.5022 1.6262 6.8301 2 0 Median 0.59753 0.47796 5.6255 2 0 Median 102420000 46875000 55540000 77273000 30822000 46451000 25143000 16054000 9089500 2517 1555 2584 6645;6646;6647;6648 10370;10371;10372;10373;10374;10375;10376;10377 10370 8 EAIANYVK LTPLFISIDPERDTKEAIANYVKEFSPKLV DPERDTKEAIANYVKEFSPKLVGLTGTREE K E A V K E 2 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 8 0 906.48108 J3QL56;O75880 J3QL56 180 187 SCO1 Protein SCO1 homolog, mitochondrial yes no 2 0.038748 47.849 1 1.3774 1.3574 NaN 1 Median 1.3774 1.3574 NaN 1 0 Median NaN NaN NaN 0 0 Median 19535000 6443500 13091000 19535000 6443500 13091000 0 0 0 2518 1334 2585 6649 10378 10378 1 EAIDSPVSFLALHNQIR HQTGLKVVRLCAKSREAIDSPVSFLALHNQ IDSPVSFLALHNQIRNMDSMPELQKLQQLK R E A I R N 2 1 1 1 0 1 1 0 1 2 2 0 0 1 1 2 0 0 0 1 0 0 17 0 1909.0058 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 550 566 UPF1 Regulator of nonsense transcripts 1 yes no 3 6.4165E-06 83.54 2 2 2.3516 2.4332 32.827 4 Linear 2.2356 2.2695 8.9512 2 0 Median 1.5474 1.3254 16.124 2 0 Median 46014000 15289000 30726000 38829000 12760000 26068000 7185700 2528200 4657500 2519 231 2586 6650;6651;6652;6653 10379;10380;10381;10382 10380 4 EAIEGTYIDK PRYYKNIGLGFKTPKEAIEGTYIDKKCPFT FKTPKEAIEGTYIDKKCPFTGNVSIRGRIL K E A D K K 1 0 0 1 0 0 2 1 0 2 0 1 0 0 0 0 1 0 1 0 0 0 10 0 1137.5554 P62280;M0QZC5 P62280 49 58 RPS11 40S ribosomal protein S11 yes no 2 5.006E-06 108.98 2 3 0.96803 0.98953 11.103 2 Median 0.894 1.0704 NaN 1 0 Median 1.0482 0.91481 NaN 1 0 Median 1781500000 1293300000 488180000 1545800000 1144500000 401300000 235700000 148830000 86876000 2520 1641 2587 6654;6655;6656;6657;6658 10383;10384;10385;10386;10387;10388;10389 10383 7 EAIEGTYIDKK PRYYKNIGLGFKTPKEAIEGTYIDKKCPFT KTPKEAIEGTYIDKKCPFTGNVSIRGRILS K E A K K C 1 0 0 1 0 0 2 1 0 2 0 2 0 0 0 0 1 0 1 0 0 0 11 1 1265.6503 P62280;M0QZC5 P62280 49 59 RPS11 40S ribosomal protein S11 yes no 2 0.0018564 70.028 2 2 1.1418 0.98727 6.1417 3 Median 0.95303 1.087 NaN 1 0 Median 1.1503 0.9784 1.276 2 0 Median 60661000 30300000 30360000 11699000 6911400 4787300 48962000 23389000 25573000 2521 1641 2588 6659;6660;6661;6662 10390;10391;10392;10393;10394 10394 4 EAIETQLAEYHK QQKLWNEELKYARGKEAIETQLAEYHKLAR RGKEAIETQLAEYHKLARKLKLIPKGAENS K E A H K L 2 0 0 0 0 1 3 0 1 1 1 1 0 0 0 0 1 0 1 0 0 0 12 0 1430.7042 A8K031;O14777;Q05DQ6 A8K031 406 417 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 5.9175E-05 115.82 2 1 0.7908 0.72014 12.891 2 Median 0.64371 0.6574 NaN 1 0 Median 0.97149 0.78887 NaN 1 0 Median 20130000 13170000 6960800 17256000 11581000 5675000 2874300 1588400 1285900 2522 696 2589 6663;6664;6665 10395;10396;10397;10398;10399 10397 5 EAIIPGSVYDR NPGARFMTTAMYDAREAIIPGSVYDRSSQG YDAREAIIPGSVYDRSSQGRPSSMYFQTHD R E A D R S 1 1 0 1 0 0 1 1 0 2 0 0 0 0 1 1 0 0 1 1 0 0 11 0 1218.6245 A0A024R7L5;A0A024R7L8;Q92900;B3KY55;Q6ZUC8 A0A024R7L5 939 949 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.0023604 61.765 3 2.323 2.2852 NaN 1 Median 2.323 2.2852 NaN 1 0 Median NaN NaN NaN 0 0 Median 22402000 5280100 17122000 22402000 5280100 17122000 0 0 0 2523 231 2590 6666;6667;6668 10400;10401;10402;10403;10404 10402 5 EAIIVGSIITK GILIPLCESGTCTLREAIIVGSIITKCSIP CTLREAIIVGSIITKCSIPVLHSSAAMLKI R E A T K C 1 0 0 0 0 0 1 1 0 4 0 1 0 0 0 1 1 0 0 1 0 0 11 0 1142.6911 Q13895 Q13895 304 314 BYSL Bystin yes yes 2 0.00060448 73.887 2 1 1.097 1.2014 21.851 3 Median 1.1152 1.2177 1.9068 2 0 Median 1.0202 0.83459 NaN 1 0 Median 97471000 44149000 53321000 91966000 41411000 50555000 5504800 2738800 2766000 2524 1724 2591 6669;6670;6671 10405;10406;10407 10405 3 EAINVEQAFQTIAR CYSKNNIPYFETSAKEAINVEQAFQTIARN KEAINVEQAFQTIARNALKQETEVELYNEF K E A A R N 3 1 1 0 0 2 2 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 14 0 1588.8209 A0A158RFU6;P51149;C9J8S3;C9J4V0;C9J4S4 A0A158RFU6 158 171 RAB7A Ras-related protein Rab-7a yes no 2 0.00020466 68.676 2 0.94303 0.79564 4.1393 2 Median NaN NaN NaN 0 0 Median 0.94303 0.79564 4.1393 2 0 Median 12113000 6789500 5323200 0 0 0 12113000 6789500 5323200 2525 628 2592 6672;6673 10408;10409 10409 2 EAIQCVDNNQSVLVSAHTSAGK KAAKEYPFILDAFQREAIQCVDNNQSVLVS NNQSVLVSAHTSAGKTVCAEYAIALALREK R E A G K T 3 0 2 1 1 2 1 1 1 1 1 1 0 0 0 3 1 0 0 3 0 0 22 0 2327.1176 P42285;B4E3M6 P42285 146 167 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 3 3.5946E-06 47.75 1 2 1.0303 0.86302 2.8298 3 Median 0.82446 0.86302 NaN 1 0 Median 1.0467 0.84476 3.601 2 0 Median 28596000 12598000 15998000 12040000 5000200 7040000 16556000 7598000 8958100 2526 1563 2593 6674;6675;6676 10410;10411;10412;10413;10414;10415;10416;10417 10413 8 EAISDAALEATENEPLNK IKTSIEVKATENCAKEAISDAALEATENEP SDAALEATENEPLNKETEEMCVMLVSNLPN K E A N K E 4 0 2 1 0 0 4 0 0 1 2 1 0 0 1 1 1 0 0 0 0 0 18 0 1913.9218 Q14966;D6W5H1;A8K583;B4E187 Q14966 882 899 ZNF638 Zinc finger protein 638 yes no 2 2.8607E-05 67.234 1 1 0.91302 0.81892 15.278 2 Median 0.88956 0.91234 NaN 1 0 Median 0.93709 0.73506 NaN 1 0 Median 19746000 10544000 9202000 17683000 9572000 8111100 2062800 971860 1090900 2527 1746 2594 6677;6678 10418;10419 10418 2 EAISDSLLR EDTRIKFLTDGMLLREAISDSLLRKYSCVI DGMLLREAISDSLLRKYSCVILDEAHERTI R E A L R K 1 1 0 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 9 0 1002.5346 B4DIS6;Q9H6R0;I3L1L6 B4DIS6 237 245 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.0021086 76.679 2 2 1.5106 1.4318 14.2 4 Median 1.5571 1.5937 3.7137 2 0 Median 1.4314 1.2609 6.5319 2 0 Median 37192000 15594000 21599000 32429000 13730000 18699000 4763800 1863800 2900000 2528 983 2595 6679;6680;6681;6682 10420;10421;10422;10423;10424;10425;10426 10424 7 EAITHLLGVALTR LENPTINHQKNRPTREAITHLLGVALTRYN TREAITHLLGVALTRYNHMLSATVKIIQML R E A T R Y 2 1 0 0 0 0 1 1 1 1 3 0 0 0 0 0 2 0 0 1 0 0 13 0 1392.8089 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 221 233 NCAPD2 Condensin complex subunit 1 yes no 2;3 4.0557E-05 112.64 4 4 1.4544 1.2673 20.902 7 Median 0.86657 0.98393 0.2551 3 0 Plateau 1.5704 1.3459 12.694 4 0 Median 434470000 215960000 218500000 248520000 138080000 110440000 185940000 77882000 108060000 2529 908 2596 6683;6684;6685;6686;6687;6688;6689;6690 10427;10428;10429;10430;10431;10432;10433;10434;10435;10436;10437;10438;10439;10440;10441;10442;10443;10444;10445 10443 19 EAIVAALLTR RQEFIRIRPNREGDREAIVAALLTRTFTDH REGDREAIVAALLTRTFTDHVMLFTQTKKQ R E A T R T 3 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1055.6339 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 420 429 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.00060252 84.213 2 1 0.83023 0.9214 4.5993 3 Plateau 0.81644 0.92056 0.12913 2 0 Median 1.027 0.85009 NaN 1 0 Median 158720000 86711000 72010000 143860000 79968000 63892000 14860000 6742500 8117700 2530 899;1099 2597 6691;6692;6693 10446;10447;10448;10449;10450 10448 5 EAIVTSEELGQDLEHVEVLQK YLRECEDVMDWINDKEAIVTSEELGQDLEH EELGQDLEHVEVLQKKFEEFQTDMAAHEER K E A Q K K 1 0 0 1 0 2 5 1 1 1 3 1 0 0 0 1 1 0 0 3 0 0 21 0 2365.2013 A0A0D9SF54;A0A0D9SGF6;Q13813;B4DGT1;B4DTV8 A0A0D9SF54 169 189 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 1.1617E-09 85.855 2 1 3.4935 3.2232 114.44 2 Median 1.3888 1.435 NaN 1 0 Median 8.7883 7.2399 NaN 1 0 Median 40028000 8828700 31199000 29379000 8087400 21291000 10649000 741320 9907600 2531 523 2598 6694;6695;6696 10451;10452;10453;10454;10455 10452 5 EAIYNDVLTK ALSRQASQELDVKRREAIYNDVLTKQQMLI DVKRREAIYNDVLTKQQMLISCVQRILMNR R E A T K Q 1 0 1 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1164.6027 A4LAA3;P46100;B4DHH8;B4DLE1;B4DLW1 A4LAA3 2388 2397 ATRX Transcriptional regulator ATRX yes no 2 1.2687E-08 123.35 2 1 0.80745 0.81657 9.2319 3 Median 0.79013 0.78656 5.296 2 0 Median 1.1609 0.91034 NaN 1 0 Median 51812000 29312000 22500000 48017000 27758000 20259000 3794400 1553900 2240500 2532 672 2599 6697;6698;6699 10456;10457;10458;10459;10460 10458 5 EAKPDELMDSK IFAPPNTSDMEAVWKEAKPDELMDSKLRCV AVWKEAKPDELMDSKLRCVFEMPNENDKLN K E A S K L 1 0 0 2 0 0 2 0 0 0 1 2 1 0 1 1 0 0 0 0 0 0 11 1 1261.586 A8KA83;Q9P0L0 A8KA83 108 118 VAPA Vesicle-associated membrane protein-associated protein A yes no 2 2.0359E-08 121.6 1 1.2654 1.4793 NaN 1 Median 1.2654 1.4793 NaN 1 0 Median NaN NaN NaN 0 0 Median 12559000 5861700 6696900 12559000 5861700 6696900 0 0 0 2533 791 2600 6700 10461 10461 635 1 EALAFIIR LFEGLKFFLNREVPREALAFIIRSFGGEVS LNREVPREALAFIIRSFGGEVSWDKSLCIG R E A I R S 2 1 0 0 0 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 8 0 931.5491 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 324 331 PES1 Pescadillo homolog yes no 2 0.003222 97.473 2 2 1.0266 1.0236 7.7949 4 Median 0.94205 1.0765 0.37479 2 0 Median 1.1521 0.94704 4.2481 2 0 Median 297440000 150950000 146490000 266710000 136440000 130260000 30734000 14506000 16228000 2534 886 2601 6701;6702;6703;6704 10462;10463;10464;10465;10466;10467;10468;10469;10470;10471;10472 10465 11 EALALQGSLEFDDAGGEGVTSHVDDEYR LPCDENRLIPTELRREALALQGSLEFDDAG AGGEGVTSHVDDEYRWAGVEDPKVMITTSR R E A Y R W 3 1 0 4 0 1 4 4 1 0 3 0 0 1 0 2 1 0 1 2 0 0 28 0 2979.337 H0Y714;Q96G21;B8ZZ47 H0Y714 38 65 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 3 9.8863E-28 104.3 1 1 1.254 1.1817 19.588 2 Median 1.2501 1.3572 NaN 1 0 Median 1.258 1.0288 NaN 1 0 Median 41795000 23390000 18406000 28154000 17482000 10671000 13641000 5907400 7734000 2535 1286 2602 6705;6706 10473;10474;10475;10476;10477 10476 5 EALCGCTVNVPTLDGR RDGSDVIYPARISLREALCGCTVNVPTLDG ALCGCTVNVPTLDGRTIPVVFKDVIRPGMR R E A G R T 1 1 1 1 2 0 1 2 0 0 2 0 0 0 1 0 2 0 0 2 0 0 16 0 1760.8186 Q6FI51;Q6FHS4;P25685;M0R080 Q6FI51 264 279 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 0.04203 39.73 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5190200 0 5190200 5190200 0 5190200 0 0 0 2536 1517 2603 6707;6708 10478;10479 10479 2 EALDIHAVDGTTEESSSLQASTTNDSGYR LEDVDGVLFVSFESKEALDIHAVDGTTEES SSSLQASTTNDSGYRARISQLEKELIEDLK K E A Y R A 3 1 1 3 0 1 3 2 1 1 2 0 0 0 0 5 4 0 1 1 0 0 29 0 3053.3698 B9EGR5;Q8IWI9;H3BP52;H3BTF4;Q9H6M4 B9EGR5 672 700 MGA MAX gene-associated protein yes no 3 0.011402 20.455 1 1.8233 1.5244 NaN 1 Median NaN NaN NaN 0 0 Median 1.8233 1.5244 NaN 1 0 Median 3632100 1054900 2577200 0 0 0 3632100 1054900 2577200 2537 1121 2604 6709 10480 10480 1 EALDVLGAVLK MEKVAASPEDIKLCREALDVLGAVLKALTS KLCREALDVLGAVLKALTSADGASEEQSQN R E A L K A 2 0 0 1 0 0 1 1 0 0 3 1 0 0 0 0 0 0 0 2 0 0 11 0 1126.6598 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;B4DKI9;D6RH20;Q8N6F2 Q6PKB3 86 96 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 2.7317E-05 102.07 2 2 1.5762 1.4462 25.738 4 Median 1.622 1.6506 3.6189 2 0 Median 1.3442 1.1179 21.344 2 0 Median 30091000 10951000 19140000 26763000 9557200 17206000 3328500 1393700 1934800 2538 305 2605 6710;6711;6712;6713 10481;10482;10483;10484;10485;10486 10483 6 EALEALVPVTIEVEVPFDLHR IIIISGRKEKCEAAKEALEALVPVTIEVEV VPVTIEVEVPFDLHRYVIGQKGSGIRKMMD K E A H R Y 2 1 0 1 0 0 4 0 1 1 3 0 0 1 2 0 1 0 0 4 0 0 21 0 2375.2737 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H0Y394;Q6ZS03;Q96CF6;Q2HJC8 A0A024R4E5 965 985 HDLBP Vigilin yes no 3 0.0014351 27.61 1 2.8516 3.0878 NaN 1 Median 2.8516 3.0878 NaN 1 0 Median NaN NaN NaN 0 0 Median 27364000 8771600 18592000 27364000 8771600 18592000 0 0 0 2539 154 2606 6714 10487 10487 1 EALELTDTGLLSGSEER FGRLKDDREKCAKAKEALELTDTGLLSGSE LELTDTGLLSGSEERVQVALEELQDLKGVW K E A E R V 1 1 0 1 0 0 4 2 0 0 4 0 0 0 0 2 2 0 0 0 0 0 17 0 1818.8847 Q14204 Q14204 1302 1318 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 3.7023E-07 96.734 1 1.8641 1.8839 NaN 1 Median 1.8641 1.8839 NaN 1 0 Median NaN NaN NaN 0 0 Median 9639800 4222700 5417100 9639800 4222700 5417100 0 0 0 2540 1729 2607 6715 10488 10488 1 EALENANTNTEVLK LAQIDGTLSTIEFQREALENANTNTEVLKN REALENANTNTEVLKNMGYAAKAMKAAHDN R E A L K N 2 0 3 0 0 0 3 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 14 0 1544.7682 Q9H444 Q9H444 94 107 CHMP4B Charged multivesicular body protein 4b yes yes 2 0.0049382 44.612 1 1.3841 1.3883 NaN 1 Median 1.3841 1.3883 NaN 1 0 Median NaN NaN NaN 0 0 Median 7559200 2600700 4958600 7559200 2600700 4958600 0 0 0 2541 2030 2608 6716 10489;10490 10490 2 EALENCITLQDFNR ELKMAEIKVKLIEAKEALENCITLQDFNRA KEALENCITLQDFNRASELKEEIKALEDAR K E A N R A 1 1 2 1 1 1 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 14 0 1721.8043 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 504 517 NCAPG Condensin complex subunit 3 no no 2 1.4392E-37 166.87 2 2 1.1219 1.111 29.374 4 Median 0.75745 0.85009 5.8028 2 0 Median 1.6258 1.4089 1.535 2 0 Median 264310000 132530000 131770000 162140000 92590000 69554000 102160000 39944000 62217000 2542 1995;1289 2609 6717;6718;6719;6720 10491;10492;10493;10494;10495;10496;10497;10498;10499;10500;10501;10502 10497 12 EALEVAVAGTELFR YKQLSVSLLCYNFLREALEVAVAGTELFRD REALEVAVAGTELFRDSGTMWQLKLQVLIE R E A F R D 3 1 0 0 0 0 3 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 14 0 1503.7933 B3KQ21;Q9NYH9;B3KX32 B3KQ21 387 400 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 5.3108E-30 159.94 2 2 1.1028 1.0706 8.7747 4 Median 0.90029 0.98425 9.2996 2 0 Median 1.3398 1.1077 2.2247 2 0 Median 125530000 59716000 65812000 88454000 45051000 43403000 37074000 14665000 22409000 2543 925 2610 6721;6722;6723;6724 10503;10504;10505;10506;10507;10508;10509;10510 10506 8 EALEYQR LRHFEELETIMDREREALEYQRQQLLADRQ ETIMDREREALEYQRQQLLADRQAFHMEQL R E A Q R Q 1 1 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 7 0 907.43995 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 953 959 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.031576 71.715 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5665900 5665900 0 5665900 5665900 0 0 0 0 2544 321 2611 6725 10511 10511 1 EALGGQALYPHVLVK TKNGKWMGIAFRIQKEALGGQALYPHVLVK EALGGQALYPHVLVKNCAVEFNFGQRAEPY K E A V K N 2 0 0 0 0 1 1 2 1 0 3 1 0 0 1 0 0 0 1 2 0 0 15 0 1593.8879 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0;M0QYZ0 M0R3F1 210 224 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 0.0014779 38.199 2 1 0.99524 0.92309 6.7592 3 Median 0.96734 0.97838 8.2264 2 0 Median 1.151 0.92175 NaN 1 0 Median 42519000 22776000 19743000 39465000 21439000 18026000 3054200 1336700 1717400 2545 49 2612 6726;6727;6728 10512;10513;10514;10515;10516 10515 5 EALGIPAAASFK LCDALNAWQLVKELKEALGIPAAASFKHVS ELKEALGIPAAASFKHVSPAGAAVGIPLSE K E A F K H 4 0 0 0 0 0 1 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 12 0 1173.6394 V9HWH7;B2R7P8;P31939;B4DP06 V9HWH7 255 266 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.0021749 69.65 3 2.5046 2.6383 NaN 1 Median 2.5046 2.6383 NaN 1 0 Median NaN NaN NaN 0 0 Median 28096000 6857500 21238000 28096000 6857500 21238000 0 0 0 2546 852 2613 6729;6730;6731 10517;10518;10519;10520 10517 4 EALGLGPPAAQLTPPPAPVGLR PPLLPSVLGPAGGDREALGLGPPAAQLTPP PAAQLTPPPAPVGLRGSGLRGLQKDSGPLP R E A L R G 4 1 0 0 0 1 1 3 0 0 4 0 0 0 6 0 1 0 0 1 0 0 22 0 2121.1946 A0A087WZ13;E9PAU2;Q8IY67 A0A087WZ13 451 472 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 2 0.023189 22.606 1 1.8306 1.8669 NaN 1 Median 1.8306 1.8669 NaN 1 0 Median NaN NaN NaN 0 0 Median 5210400 1849900 3360400 5210400 1849900 3360400 0 0 0 2547 438 2614 6732 10521 10521 1 EALIAASETLK LSRHNTAVSQLTKAKEALIAASETLKERKA TKAKEALIAASETLKERKAAIRDIEGKLPQ K E A L K E 3 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1144.634 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 525 535 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 3.2449E-10 132.88 2 0.84664 1.0009 4.3839 2 Median 0.84664 1.0009 4.3839 2 0 Median NaN NaN NaN 0 0 Median 1103700000 602670000 501010000 1103700000 602670000 501010000 0 0 0 2548 2070 2615 6733;6734 10522;10523;10524 10523 3 EALLELLR TLVQRYKADLATDQKEALLELLRLQPHPQL DLATDQKEALLELLRLQPHPQLSPEIRREL K E A L R L 1 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 955.57023 Q13895 Q13895 399 406 BYSL Bystin yes yes 2 1.5387E-05 143.85 2 2 1.06 1.0271 21.238 4 Median 1.1205 1.216 0.7492 2 0 Median 0.99799 0.84422 4.6029 2 0 Median 92047000 43122000 48924000 78191000 35810000 42382000 13856000 7312900 6542600 2549 1724 2616 6735;6736;6737;6738 10525;10526;10527;10528;10529;10530;10531 10528 7 EALLGVQEDVDEYVK ELHYPLGERRSDYDREALLGVQEDVDEYVK EALLGVQEDVDEYVKLGHEEQQKRLQAIIK R E A V K L 1 0 0 2 0 1 3 1 0 0 2 1 0 0 0 0 0 0 1 3 0 0 15 0 1705.841 Q14257;H0YL43 Q14257 42 56 RCN2 Reticulocalbin-2 yes no 2 2.1296E-10 119.76 1 2 1.5787 1.3879 11.944 3 Median 1.5708 1.569 NaN 1 0 Median 1.6338 1.3096 8.2164 2 0 Median 52160000 21693000 30467000 26505000 10171000 16334000 25656000 11523000 14133000 2550 1730 2617 6739;6740;6741 10532;10533;10534;10535;10536;10537 10533 6 EALLSSAVDHGSDEVK QTIIAGWREATKAAREALLSSAVDHGSDEV ALLSSAVDHGSDEVKFRQDLMNIAGTTLSS R E A V K F 2 0 0 2 0 0 2 1 1 0 2 1 0 0 0 3 0 0 0 2 0 0 16 0 1655.8002 F8VQ14;F5GWF6;V9HW96;P78371 F8VQ14 139 154 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 2 0.010855 47.189 1 1 3.2937 2.7287 NaN 1 Median NaN NaN NaN 0 0 Median 3.2937 2.7287 NaN 1 0 Median 9520000 468590 9051500 7794500 0 7794500 1725600 468590 1257000 2551 1255 2618 6742;6743 10538;10539 10538 2 EALNSLSQLSYSTSSSK DKKINEMSKEVTKLKEALNSLSQLSYSTSS LNSLSQLSYSTSSSKRQSQQLEALQQQVKQ K E A S K R 1 0 1 0 0 1 1 0 0 0 3 1 0 0 0 7 1 0 1 0 0 0 17 0 1800.8741 Q9P0K7;B3KMZ9 Q9P0K7 896 912 RAI14 Ankycorbin yes no 2 0.017034 43.382 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2552 2093 2619 6744 10540 10540 1 EALNVFGNDYDTEDGTGVR ______________________________ VFGNDYDTEDGTGVRDYIHVVDLAKGHIAA R E A V R D 1 1 2 3 0 0 2 3 0 0 1 0 0 1 0 0 2 0 1 2 0 0 19 0 2070.913 Q5QPP9;Q5QPP3;Q5QPP4;A0A024RAB7;Q14376 Q5QPP9 7 25 GALE UDP-glucose 4-epimerase yes no 2 8.115E-05 67.234 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2553 299 2620 6745;6746;6747 10541;10542;10543 10541 3 EALNVINTHTK LHCKVVCLIQNGSFKEALNVINTHTKVLAN GSFKEALNVINTHTKVLANNSLSFEKAYCE K E A T K V 1 0 2 0 0 0 1 0 1 1 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1238.6619 V9HWK0;O76094;Q86X80;A0PJJ5;Q0D2M6;Q71V07;R4GNC1 V9HWK0 63 73 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 1.9541E-12 142 2 1.1314 1.1749 4.0446 2 Median 1.1314 1.1749 4.0446 2 0 Median NaN NaN NaN 0 0 Median 38961000 19291000 19669000 38961000 19291000 19669000 0 0 0 2554 1416 2621 6748;6749 10544;10545;10546;10547 10546 3 EALPVSLPQIPCLSSFK QTPVENSTNSQHQVKEALPVSLPQIPCLSS LPVSLPQIPCLSSFKIHQPYTLTFAELVED K E A F K I 1 0 0 0 1 1 1 0 0 1 3 1 0 1 3 3 0 0 0 1 0 0 17 0 1885.0019 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6;E9PJ60 Q8TDR3 566 582 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 2 0.010144 31.675 2 1.6483 1.6501 7.4479 2 Median 1.6483 1.6501 7.4479 2 0 Median NaN NaN NaN 0 0 Median 11216000 4106900 7109300 11216000 4106900 7109300 0 0 0 2555 1901 2622 6750;6751 10548;10549;10550;10551 10549 4 EALQYFYFLR LLMLYTRKFESTDPREALQYFYFLRDEKDS STDPREALQYFYFLRDEKDSQGENMFLRCV R E A L R D 1 1 0 0 0 1 1 0 0 0 2 0 0 2 0 0 0 0 2 0 0 0 10 0 1348.6816 Q8N1F7;A8K897;H3BVG0 Q8N1F7 546 555 NUP93 Nuclear pore complex protein Nup93 yes no 2 4.5577E-08 116.73 1 1.9303 1.9351 NaN 1 Median 1.9303 1.9351 NaN 1 0 Median NaN NaN NaN 0 0 Median 11296000 4831400 6464600 11296000 4831400 6464600 0 0 0 2556 1904 2623 6752 10552 10552 1 EALSFPHLHLR IGSFAEPSSVSFSSKEALSFPHLHLRGQRN FSSKEALSFPHLHLRGQRNDRDQHTDSTQS K E A L R G 1 1 0 0 0 0 1 0 2 0 3 0 0 1 1 1 0 0 0 0 0 0 11 0 1318.7146 Q03164 Q03164 2363 2373 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 3 0.057227 18.19 1 2.049 1.849 NaN 1 Median NaN NaN NaN 0 0 Median 2.049 1.849 NaN 1 0 Median 2083000 760660 1322300 0 0 0 2083000 760660 1322300 2557 1680 2624 6753 10553 10553 1 EALVDTLTGILSPVQEVR GAASGLPGPVAQGLKEALVDTLTGILSPVQ VDTLTGILSPVQEVRAAAEEQIKVLEVTEE K E A V R A 1 1 0 1 0 1 2 1 0 1 3 0 0 0 1 1 2 0 0 3 0 0 18 0 1939.0626 Q96P70 Q96P70 23 40 IPO9 Importin-9 yes yes 2 8.6826E-06 68.809 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2479800 0 2479800 2479800 0 2479800 0 0 0 2558 1983 2625 6754 10554 10554 1 EAMEDGEIDGNK GFVDFNSEEDAKAAKEAMEDGEIDGNKVTL AAKEAMEDGEIDGNKVTLDWAKPKGEGGFG K E A N K V 1 0 1 2 0 0 3 2 0 1 0 1 1 0 0 0 0 0 0 0 0 0 12 0 1306.5347 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 551 562 NCL Nucleolin yes no 2 0.016404 42.21 2 0.63529 0.53896 3.1728 2 Median NaN NaN NaN 0 0 Median 0.63529 0.53896 3.1728 2 0 Median 3328200 1822200 1506000 0 0 0 3328200 1822200 1506000 2559 151 2626 6755;6756 10555;10556;10557 10555 3 EAMNDPLLER AKTILKYMTDGMLLREAMNDPLLERYGVII GMLLREAMNDPLLERYGVIILDEAHERTLA R E A E R Y 1 1 1 1 0 0 2 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 10 0 1186.5652 O43143;B4E0S6 O43143 244 253 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.00034978 82.287 2 1.6752 1.8839 0.92713 2 Median 1.6752 1.8839 0.92713 2 0 Median NaN NaN NaN 0 0 Median 113040000 43252000 69790000 113040000 43252000 69790000 0 0 0 2560 1379 2627 6757;6758 10558;10559;10560;10561;10562;10563 10562 1044 6 EAMVQAEEAAAEITR YETGEIPRKNLDVMKEAMVQAEEAAAEITR EAMVQAEEAAAEITRKLEKQEKKRLKKEKK K E A T R K 5 1 0 0 0 1 4 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 15 0 1617.7668 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653;Q9BSN3 A8K9K6 423 437 NOP56 Nucleolar protein 56 yes no 2 1.4884E-84 216.68 4 7 0.96178 0.8693 30.723 11 Median 1.0152 1.1622 8.233 4 0 Median 0.74793 0.62259 24.15 7 0 Median 652190000 336600000 315580000 535370000 272290000 263080000 116820000 64313000 52506000 2561 785 2628;2629 6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769 10564;10565;10566;10567;10568;10569;10570;10571;10572;10573;10574;10575;10576;10577;10578;10579;10580;10581;10582;10583;10584;10585;10586;10587;10588 10564 618 25 EAMVQAEEAAAEITRK YETGEIPRKNLDVMKEAMVQAEEAAAEITR AMVQAEEAAAEITRKLEKQEKKRLKKEKKR K E A R K L 5 1 0 0 0 1 4 0 0 1 0 1 1 0 0 0 1 0 0 1 0 0 16 1 1745.8618 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653;Q9BSN3 A8K9K6 423 438 NOP56 Nucleolar protein 56 yes no 3 0.00046707 56.817 2 0.70018 0.80448 NaN 1 Median 0.70018 0.80448 NaN 1 0 Median NaN NaN NaN 0 0 Median 33493000 22175000 11318000 33493000 22175000 11318000 0 0 0 2562 785 2630 6770;6771 10589;10590 10589 618 1 EANAFEEQLLK HEQWVNEDRHYMKRKEANAFEEQLLKQKMD MKRKEANAFEEQLLKQKMDELHKKLHQVVE K E A L K Q 2 0 1 0 0 1 3 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 11 0 1290.6456 A0JLU2;B4DYG2;O43683;A8K5A6 A0JLU2 280 290 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 0.043074 35.652 1 0.88558 0.69225 NaN 1 Median NaN NaN NaN 0 0 Median 0.88558 0.69225 NaN 1 0 Median 3404800 1671700 1733100 0 0 0 3404800 1671700 1733100 2563 641 2631 6772 10591 10591 1 EANEILQR KREDLVVAPAGITLKEANEILQRSKKGKLP PAGITLKEANEILQRSKKGKLPIVNEDDEL K E A Q R S 1 1 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 971.50361 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;C9K0R9;A0A024R725;C9J381;H0Y4R1;P12268;B7Z1G4;Q6QE17;E7ETK5 H0Y4R1 128 135 IMPDH;DKFZp781N0678;IMPDH1;IMPDH2 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1;Inosine-5-monophosphate dehydrogenase 2 no no 2 6.3053E-14 166.78 2 2 1.3392 1.3082 17.705 4 Median 1.3221 1.5197 0.79454 2 0 Median 1.3628 1.119 1.6879 2 0 Median 359450000 150390000 209060000 338700000 141240000 197450000 20750000 9144500 11605000 2564 1282;935 2632 6773;6774;6775;6776 10592;10593;10594;10595;10596 10593 5 EANFTVSSMHGDMPQK CNTKRKVDWLTEKMREANFTVSSMHGDMPQ ANFTVSSMHGDMPQKERESIMKEFRSGASR R E A Q K E 1 0 1 1 0 1 1 1 1 0 0 1 2 1 1 2 1 0 0 1 0 0 16 0 1777.7764 A0A024R8W0;P38919 A0A024R8W0 299 314 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2;3 1.9457E-05 76.073 2 4.4449 4.7225 NaN 1 Median 4.4449 4.7225 NaN 1 0 Median NaN NaN NaN 0 0 Median 35084000 3354300 31729000 35084000 3354300 31729000 0 0 0 2565 261 2633 6777;6778 10597;10598;10599 10599 197;198 3 EANLQALIATGGDINAAIER QQQLEQLNSMGFINREANLQALIATGGDIN ALIATGGDINAAIERLLGSQLS________ R E A E R L 5 1 2 1 0 1 2 2 0 3 2 0 0 0 0 0 1 0 0 0 0 0 20 0 2039.0647 D3DVA8;A0A024R258;B4DZF6;B3KNI8;B3KNI2;Q59F94;Q9UMX0;Q9NRR5 D3DVA8 397 416 UBQLN4;UBQLN1 Ubiquilin-1;Ubiquilin-4 no no 2 9.8831E-07 68.83 2 1 0.73821 0.70087 28.551 2 Median 0.82477 0.85766 NaN 1 0 Median 0.66073 0.57274 NaN 1 0 Median 14404000 3801400 10602000 11904000 2526100 9377500 2500300 1275300 1224900 2566 105 2634 6779;6780;6781 10600;10601;10602;10603 10601 4 EANNFLWPFK EDLIHEIYTVGKRFKEANNFLWPFKLSSPR GKRFKEANNFLWPFKLSSPRGGMKKKTTHF K E A F K L 1 0 2 0 0 0 1 0 0 0 1 1 0 2 1 0 0 1 0 0 0 0 10 0 1264.6241 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 214 223 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2 2.1901E-40 195.32 2 2 0.81786 0.80939 12.694 4 Median 0.76763 0.90131 0.60612 2 0 Median 0.8731 0.72372 1.2155 2 0 Median 728340000 416360000 311980000 647020000 373070000 273950000 81320000 43289000 38030000 2567 240 2635 6782;6783;6784;6785 10604;10605;10606;10607;10608;10609;10610;10611;10612;10613;10614 10609 11 EAPAPVAHPAPGGPEEQWQR DARKKVPAAPITVSKEAPAPVAHPAPGGPE VAHPAPGGPEEQWQRAIHERGEAVCPTCNV K E A Q R A 4 1 0 0 0 2 3 2 1 0 0 0 0 0 5 0 0 1 0 1 0 0 20 0 2123.0185 Q96KM6 Q96KM6 483 502 ZNF512B Zinc finger protein 512B yes yes 3 0.00048463 34.615 1 1 2.0166 1.7376 NaN 1 Median NaN NaN NaN 0 0 Median 2.0166 1.7376 NaN 1 0 Median 6796100 5191900 1604200 4134700 4134700 0 2661400 1057200 1604200 2568 1976 2636 6786;6787 10615;10616;10617 10616 3 EAPASVVPFVR SPVRVKREFEPASAREAPASVVPFVRVKRE ASAREAPASVVPFVRVKREREVDEDSEPER R E A V R V 2 1 0 0 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 3 0 0 11 0 1170.6397 B9A018;Q53GS9;F8WC91 B9A018 61 71 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.0038045 66.962 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9709100 0 9709100 9709100 0 9709100 0 0 0 2569 1119 2637 6788;6789 10618;10619 10618 2 EAPNPIHLTVDTSLQNGR DITEHSVLIHEYYSREAPNPIHLTVDTSLQ NPIHLTVDTSLQNGRMSIKAYVSTLMGVPG R E A G R M 1 1 2 1 0 1 1 1 1 1 2 0 0 0 2 1 2 0 0 1 0 0 18 0 1960.9967 B4DMT5;B3KSH1;O00303;B4DEW9 B4DMT5 143 160 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 3 0.0047181 24.793 1 1 1.3485 1.2554 8.7757 2 Median 1.3609 1.3358 NaN 1 0 Median 1.3362 1.1799 NaN 1 0 Median 15237000 6880600 8356400 13773000 6326800 7446700 1463500 553820 909670 2570 939 2638 6790;6791 10620;10621 10620 2 EAPPMEKPEVVK RKQHSLLKRLRKAKKEAPPMEKPEVVKTHL AKKEAPPMEKPEVVKTHLRDMIILPEMVGS K E A V K T 1 0 0 0 0 0 3 0 0 0 0 2 1 0 3 0 0 0 0 2 0 0 12 1 1352.701 S4R456;K7EM56;A0A0B4J2B4;K7EJ78;S4R417;K7EQJ5;K7ELC2;P62841 S4R456 33 44 RPS15 40S ribosomal protein S15 yes no 2;3 2.6868E-08 118.23 4 1.448 1.6957 6.3917 4 Median 1.448 1.6957 6.3917 4 0 Median NaN NaN NaN 0 0 Median 475370000 198000000 277380000 475370000 198000000 277380000 0 0 0 2571 504 2639 6792;6793;6794;6795 10622;10623;10624;10625;10626 10622 355 5 EAQAVPATLPELEATK QGAEEVLRAHEEQLKEAQAVPATLPELEAT AQAVPATLPELEATKASLKKLRAQAEAQQP K E A T K A 4 0 0 0 0 1 3 0 0 0 2 1 0 0 2 0 2 0 0 1 0 0 16 0 1666.8778 Q15149 Q15149 1251 1266 PLEC Plectin yes yes 2 1.9278E-08 94.122 3 1 2.7941 2.2787 NaN 1 Median NaN NaN NaN 0 0 Median 2.7941 2.2787 NaN 1 0 Median 41300000 1377700 39922000 35517000 0 35517000 5783200 1377700 4405400 2572 1754 2640 6796;6797;6798;6799 10627;10628;10629;10630;10631 10629 5 EAQDIILQLR KMLVLALENEKSKVKEAQDIILQLRKECYY KSKVKEAQDIILQLRKECYYLTCQLYALKG K E A L R K 1 1 0 1 0 2 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1197.6717 B5BUA4;Q5FBB7;A0A024R2J4 B5BUA4 77 86 SGOL1 Shugoshin-like 1 yes no 2 1.9453E-06 105.52 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3375900 0 3375900 0 0 0 3375900 0 3375900 2573 1075 2641 6800 10632 10632 1 EAQELSQNSAIK SGHQGRTIIFCETKKEAQELSQNSAIKQDA TKKEAQELSQNSAIKQDAQSLHGDIPQKQR K E A I K Q 2 0 1 0 0 2 2 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 12 0 1316.6572 Q9NR30 Q9NR30 450 461 DDX21 Nucleolar RNA helicase 2 yes yes 2 1.0535E-103 242.59 2 2 1.1679 1.1381 12.623 4 Median 1.1259 1.2771 3.7158 2 0 Median 1.2143 1.0301 1.5305 2 0 Median 428470000 199840000 228640000 308420000 146600000 161820000 120050000 53237000 66813000 2574 2065 2642 6801;6802;6803;6804 10633;10634;10635;10636;10637;10638;10639 10634 7 EAQLYAAQAHLK MLDLAKIIFKRQETKEAQLYAAQAHLKLGE ETKEAQLYAAQAHLKLGEVSVESENYVQAV K E A L K L 4 0 0 0 0 2 1 0 1 0 2 1 0 0 0 0 0 0 1 0 0 0 12 0 1341.7041 Q53H03;P49321;E9PI86;O95138;Q5T626;Q5T624;E9PRH9;B4DS57;H0YF33;Q9P1N1 Q53H03 536 547 NASP Nuclear autoantigenic sperm protein yes no 2 2.3758E-05 101.65 2 1.5704 1.5835 5.5963 2 Median 1.5704 1.5835 5.5963 2 0 Median NaN NaN NaN 0 0 Median 27449000 10853000 16597000 27449000 10853000 16597000 0 0 0 2575 1579 2643 6805;6806 10640;10641 10640 2 EAQTSFLHLGYLPNQLFR DILAPTVQELAALEKEAQTSFLHLGYLPNQ TSFLHLGYLPNQLFRTF_____________ K E A F R T 1 1 1 0 0 2 1 1 1 0 4 0 0 2 1 1 1 0 1 0 0 0 18 0 2133.1007 F1T0B3;A0A087X2G1;A3RJH1;Q92499 F1T0B3 640 657 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 0.00012239 45.618 2 2 1.0634 0.99352 11.721 4 Median 0.92039 0.94835 5.8776 2 0 Median 1.2805 1.0951 13.063 2 0 Median 75753000 36338000 39415000 40958000 20603000 20355000 34795000 15735000 19060000 2576 452 2644 6807;6808;6809;6810 10642;10643;10644;10645;10646;10647;10648;10649 10647 8 EASDLLEQNR ELTSLLEKELEQSQKEASDLLEQNRLLQDQ EQSQKEASDLLEQNRLLQDQLRVALGREQS K E A N R L 1 1 1 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1173.5626 J3KSW8;U6FSN9;Q6WCQ1;B9EGI2;Q8N236;H0Y2S9 J3KSW8 495 504 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.00053294 90.906 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10933000 0 10933000 10933000 0 10933000 0 0 0 2577 1330 2645 6811 10650 10650 1 EASDPQPEEADGGLK DPRNKISFKFDHLRKEASDPQPEEADGGLK EASDPQPEEADGGLKSWRESCDSALRAYVK K E A L K S 2 0 0 2 0 1 3 2 0 0 1 1 0 0 2 1 0 0 0 0 0 0 15 0 1541.6845 A8K0T9;A0A024R0E5;P52907 A8K0T9 104 118 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 2 1.28E-07 110.08 2 1.294 1.3174 9.5059 2 Median 1.294 1.3174 9.5059 2 0 Median NaN NaN NaN 0 0 Median 30802000 13938000 16864000 30802000 13938000 16864000 0 0 0 2578 43 2646 6812;6813 10651;10652;10653;10654 10653 4 EASEDASALGSSSYK FQGRMLHVLPSTIKKEASEDASALGSSSYK EASEDASALGSSSYKKKKEAQDKANSASSH K E A Y K K 3 0 0 1 0 0 2 1 0 0 1 1 0 0 0 5 0 0 1 0 0 0 15 0 1500.658 Q9Y4C8 Q9Y4C8 483 497 RBM19 Probable RNA-binding protein 19 yes yes 2 0.0013025 60.161 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2579 2145 2647 6814;6815 10655;10656 10655 2 EASGDLPEAQIVK NLGVAVIHDYADWVKEASGDLPEAQIVKHW VKEASGDLPEAQIVKHWSLTWTLCEALWGH K E A V K H 2 0 0 1 0 1 2 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1355.6933 P52948;H7C3P6;A0A024RCC4 P52948 1255 1267 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0099391 42.243 1 1.4446 1.4939 NaN 1 Median 1.4446 1.4939 NaN 1 0 Median NaN NaN NaN 0 0 Median 12731000 4645900 8084900 12731000 4645900 8084900 0 0 0 2580 1603 2648 6816 10657 10657 1 EASGETTGVDITK GNEVDSQSSIRTEAKEASGETTGVDITKIQ AKEASGETTGVDITKIQVKRCETMREKHMQ K E A T K I 1 0 0 1 0 0 2 2 0 1 0 1 0 0 0 1 3 0 0 1 0 0 13 0 1306.6252 B4DLG2;O75152;E9PQ61 B4DLG2 487 499 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.039731 31.478 1 1.1547 0.95823 NaN 1 Median NaN NaN NaN 0 0 Median 1.1547 0.95823 NaN 1 0 Median 2286700 1364300 922340 0 0 0 2286700 1364300 922340 2581 996 2649 6817 10658 10658 1 EASILLGD DVHTLLDRVVRQHVREASILLGD_______ VVRQHVREASILLGD_______________ R E A G D - 1 0 0 1 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 8 0 816.4229 Q9NPD3 Q9NPD3 238 245 EXOSC4 Exosome complex component RRP41 yes yes 1 0.0075151 90.706 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9711200 0 0 9711200 0 0 0 0 0 2582 2056 2650 6818 10659 10659 1 EASLQFVVEPSEATNR QKSHPKSVPVSSKKKEASLQFVVEPSEATN ASLQFVVEPSEATNRSVQAHEVHQKILATD K E A N R S 2 1 1 0 0 1 3 0 0 0 1 0 0 1 1 2 1 0 0 2 0 0 16 0 1775.869 Q03188;H0Y8J2 Q03188 94 109 CENPC Centromere protein C yes no 2 1.2378E-08 105.65 2 2 0.97071 0.92311 31.019 4 Median 0.64982 0.68674 11.175 2 0 Median 1.4189 1.1611 1.7874 2 0 Median 96601000 51627000 44974000 74759000 42429000 32330000 21843000 9198100 12644000 2583 1681 2651 6819;6820;6821;6822 10660;10661;10662;10663;10664;10665;10666 10663 7 EASYSLIR EDVLPLAFTRLCEPKEASYSLIRKYVSQYY TRLCEPKEASYSLIRKYVSQYYPKLRVDIR K E A I R K 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 0 8 0 937.4869 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 275 282 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0087497 77.282 1 2 0.90377 0.81002 5.7214 3 Median 0.7349 0.87011 NaN 1 0 Median 0.91612 0.79336 2.9383 2 0 Median 466970000 275150000 191820000 385180000 233090000 152090000 81791000 42053000 39738000 2584 1817 2652 6823;6824;6825 10667;10668;10669;10670;10671;10672 10669 6 EATADDLIK VVANLQYDDGSGMKREATADDLIKVVEELT GSGMKREATADDLIKVVEELTRIH______ R E A I K V 2 0 0 2 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 974.49204 Q16531;B4DSA8;B4DZP5 Q16531 1123 1131 DDB1 DNA damage-binding protein 1 yes no 2 0.0067325 71.692 2 1 1.3045 1.0715 NaN 1 Median NaN NaN NaN 0 0 Median 1.3045 1.0715 NaN 1 0 Median 85856000 80548000 5307900 76381000 76381000 0 9474900 4167000 5307900 2585 1770 2653 6826;6827;6828 10673;10674;10675 10674 3 EATAQKPTGSVGSTVTTPPPLVR KLVLLKKLRQSQIQKEATAQKPTGSVGSTV GSVGSTVTTPPPLVRGTQNIPAGKPSLQTS K E A V R G 2 1 0 0 0 1 1 2 0 0 1 1 0 0 4 2 5 0 0 3 0 0 23 1 2293.2278 A0A024R7K7;A0A024R7M6;Q86YP4 A0A024R7K7 173 195 GATAD2A Transcriptional repressor p66-alpha yes no 3 0.00040801 34.658 1 1 1.4512 1.4251 19.826 2 Median 1.0806 1.2387 NaN 1 0 Median 1.949 1.6395 NaN 1 0 Median 27832000 13836000 13996000 23413000 12442000 10972000 4419100 1394700 3024400 2586 229 2654 6829;6830 10676;10677;10678 10676 3 EATDAIGHLDR IVMPDGSGIYDPCEKEATDAIGHLDRQQRE PCEKEATDAIGHLDRQQREDITQSAQHALR K E A D R Q 2 1 0 2 0 0 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 11 0 1196.5786 F4ZW64;F4ZW65;A0A024R7C7;F4ZW66;Q12906;A8K590;Q59GP7 F4ZW64 298 308 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.0025118 73.885 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7966500 0 7966500 7966500 0 7966500 0 0 0 2587 220 2655 6831 10679 10679 1 EATGHFQESEPFSHIDPEESEETR LLAKASYKKAIILTREATGHFQESEPFSHI EPFSHIDPEESEETRLLNILGLIFKGPAAS R E A T R L 1 1 0 1 0 1 7 1 2 1 0 0 0 2 2 3 2 0 0 0 0 0 24 0 2787.1896 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 538 561 NCAPD2 Condensin complex subunit 1 yes no 3;4 5.2044E-22 111.97 2 2 1.1923 1.1599 19.835 4 Median 0.89609 0.96661 8.6932 2 0 Median 1.5797 1.3447 3.8263 2 0 Median 103530000 48087000 55448000 68436000 33778000 34657000 35099000 14308000 20790000 2588 908 2656 6832;6833;6834;6835 10680;10681;10682;10683;10684;10685;10686;10687 10684 8 EATHSSGFSGSSASVASTSSIK TLSIKKLSPIIEDSREATHSSGFSGSSASV FSGSSASVASTSSIKCLQIPEKLELTNETS R E A I K C 3 0 0 0 0 0 1 2 1 1 0 1 0 1 0 9 2 0 0 1 0 0 22 0 2083.9658 O60566 O60566 678 699 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 3 0.037177 13.332 1 1.1985 1.2072 NaN 1 Median 1.1985 1.2072 NaN 1 0 Median NaN NaN NaN 0 0 Median 16148000 5903700 10244000 16148000 5903700 10244000 0 0 0 2589 1396 2657 6836 10688 10688 1 EATNPPVIQEEK EGGRELSDFISYLQREATNPPVIQEEKPKK LQREATNPPVIQEEKPKKKKKAQEDL____ R E A E K P 1 0 1 0 0 1 3 0 0 1 0 1 0 0 2 0 1 0 0 1 0 0 12 0 1353.6776 B4DDM1;B3KQT9;B3KQT2;V9HVY3;P30101 B4DDM1 257 268 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 2 0.016404 47.971 2 1.3053 1.3544 NaN 1 Median 1.3053 1.3544 NaN 1 0 Median NaN NaN NaN 0 0 Median 16002000 4093700 11909000 16002000 4093700 11909000 0 0 0 2590 930 2658 6837;6838 10689;10690 10690 2 EATTEFSVDAR VQCYGPGIEGQGVFREATTEFSVDARALTQ GVFREATTEFSVDARALTQTGGPHVKARVA R E A A R A 2 1 0 1 0 0 2 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 11 0 1224.5622 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1273 1283 FLNA;FLJ00119 Filamin-A yes no 2 2.2671E-05 103.88 2 1 1.389 1.5645 1.111 2 Median 1.389 1.5645 1.111 2 0 Median NaN NaN NaN 0 0 Median 154260000 61391000 92873000 150590000 61391000 89196000 3677100 0 3677100 2591 1504 2659 6839;6840;6841 10691;10692;10693 10691 3 EATTTLHMLTLLK AKFCIQEIEKSGGSKEATTTLHMLTLLKDL SKEATTTLHMLTLLKDLLPCFPEGLVKSCS K E A L K D 1 0 0 0 0 0 1 0 1 0 4 1 1 0 0 0 4 0 0 0 0 0 13 0 1470.8116 B3KMR5;Q5JTH9 B3KMR5 300 312 RRP12 RRP12-like protein yes no 2 0.0059301 48.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9354800 0 9354800 9354800 0 9354800 0 0 0 2592 907 2660 6842 10694 10694 728 1 EATWTMSNITAGR VFPSLLTNPKTNIQKEATWTMSNITAGRQD QKEATWTMSNITAGRQDQIQQVVNHGLVPF K E A G R Q 2 1 1 0 0 0 1 1 0 1 0 0 1 0 0 1 3 1 0 0 0 0 13 0 1436.6718 Q7Z726;A8K7D9;P52292 Q7Z726 354 366 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.0053824 53.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2593 769 2661 6843 10695 10695 595 1 EAVEENGVITDK DPEACYIGTEPWKPKEAVEENGVITDKADI KPKEAVEENGVITDKADIFAFGLTLWEMMT K E A D K A 1 0 1 1 0 0 3 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 12 0 1302.6303 V9HWH0;Q96KB5 V9HWH0 216 227 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 2 9.6174E-05 96.015 1 1.7494 1.7464 NaN 1 Median 1.7494 1.7464 NaN 1 0 Median NaN NaN NaN 0 0 Median 14223000 3738100 10484000 14223000 3738100 10484000 0 0 0 2594 1975 2662 6844 10696 10696 1 EAVEQFESQGVDLSNIVK ENIEEFAMGPEEAVKEAVEQFESQGVDLSN EQFESQGVDLSNIVKTAPKVSADGSQEPTH K E A V K T 1 0 1 1 0 2 3 1 0 1 1 1 0 1 0 2 0 0 0 3 0 0 18 0 1990.9848 Q6NXE6;F5H2X2;F5H2K4;F5GWV0;F5H4P3;F5H3X1;F5H052 Q6NXE6 57 74 ARMC6 Armadillo repeat-containing protein 6 yes no 2 0.0010299 54.524 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3924100 0 3924100 3924100 0 3924100 0 0 0 2595 1848 2663 6845 10697 10697 1 EAVFATCGQQVDIWDEQR ILGKTVYTGIDHHWKEAVFATCGQQVDIWD FATCGQQVDIWDEQRTNPICSMTWGFDSIS K E A Q R T 2 1 0 2 1 3 2 1 0 1 0 0 0 1 0 0 1 1 0 2 0 0 18 0 2150.9691 A0A087WT20;Q9NV06;B3KME9;A0A087X1F8;E5RHM4 A0A087WT20 320 337 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 8.3022E-05 49.482 2 1.2701 1.0665 0.93232 2 Median NaN NaN NaN 0 0 Median 1.2701 1.0665 0.93232 2 0 Median 16516000 6982100 9533700 0 0 0 16516000 6982100 9533700 2596 402 2664 6846;6847 10698;10699;10700;10701 10700 4 EAVGGQAEDHLK EMQQRVIKKSKDMAKEAVGGQAEDHLKLKD MAKEAVGGQAEDHLKLKDGQQQNETKKKKG K E A L K L 2 0 0 1 0 1 2 2 1 0 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1252.6048 A0A0A0MRP0;Q8IWC1 A0A0A0MRP0 599 610 MAP7D3 MAP7 domain-containing protein 3 yes no 2 0.0022514 59.067 1 0.82545 0.87174 NaN 1 Median 0.82545 0.87174 NaN 1 0 Median NaN NaN NaN 0 0 Median 4256200 2364100 1892100 4256200 2364100 1892100 0 0 0 2597 470 2665 6848 10702 10702 1 EAVILPIK WNDVAGLEGAKEALKEAVILPIKFPHLFTG GAKEALKEAVILPIKFPHLFTGKRTPWRGI K E A I K F 1 0 0 0 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 8 0 881.5586 A0A024R705;Q9UN37;I3L4J1;A8K5D8;A8K4G7;A0A024R2C5;O75351 A0A024R705 141 148 VPS4A;VPS4B Vacuolar protein sorting-associated protein 4A;Vacuolar protein sorting-associated protein 4B yes no 2 0.016959 60.76 1 2.6444 2.7674 NaN 1 Median 2.6444 2.7674 NaN 1 0 Median NaN NaN NaN 0 0 Median 12055000 2905000 9149800 12055000 2905000 9149800 0 0 0 2598 213 2666 6849 10703 10703 1 EAVLLLK PLVVEDKVEGYKKTKEAVLLLKKLKAWNDI VEGYKKTKEAVLLLKKLKAWNDIKKVYASQ K E A L K K 1 0 0 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 784.50584 P36578;Q59GY2;H3BM89;B4DFI6;Q53G74;B4DMJ2;H3BTP7 P36578 166 172 RPL4 60S ribosomal protein L4 yes no 2 0.056031 52.299 1 1.0942 0.91542 NaN 1 Median NaN NaN NaN 0 0 Median 1.0942 0.91542 NaN 1 0 Median 50639000 24121000 26518000 0 0 0 50639000 24121000 26518000 2599 1548 2667 6850 10704 10704 1 EAVLNAYR RRMLPLIWSKEPGVREAVLNAYRQLYLNPK SKEPGVREAVLNAYRQLYLNPKGDSARAKA R E A Y R Q 2 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 934.48723 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00 B3KMS0 691 698 NCAPD2 Condensin complex subunit 1 yes no 2 3.4057E-14 170.94 2 2 1.168 1.1765 11.919 4 Median 0.91946 1.079 2.6367 2 0 Median 1.518 1.3127 5.8865 2 0 Median 843730000 435060000 408660000 756980000 401660000 355320000 86750000 33408000 53342000 2600 908 2668 6851;6852;6853;6854 10705;10706;10707;10708;10709;10710;10711;10712;10713 10709 9 EAVQLVNTR LHLLTQEALSIHGVKEAVQLVNTREEVEDL SIHGVKEAVQLVNTREEVEDLCRLDKMIDL K E A T R E 1 1 1 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1028.5615 P54886 P54886 531 539 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.00017706 93.267 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62594000 0 62594000 60648000 0 60648000 1945200 0 1945200 2601 1611 2669 6855;6856 10714;10715 10714 2 EAVQLVNTREEVEDLCR LHLLTQEALSIHGVKEAVQLVNTREEVEDL VQLVNTREEVEDLCRLDKMIDLIIPRGSSQ K E A C R L 1 2 1 1 1 1 4 0 0 0 2 0 0 0 0 0 1 0 0 3 0 0 17 1 2059.0004 P54886 P54886 531 547 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 0.044218 33.308 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1485100 0 1485100 0 0 0 1485100 0 1485100 2602 1611 2670 6857 10716 10716 1 EAVVHLR KRKAEVKKTKAGNTKEAVVHLRKSTRNTSN KTKAGNTKEAVVHLRKSTRNTSNIPVILEP K E A L R K 1 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 822.47119 Q6P0N0 Q6P0N0 798 804 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.012017 106.76 1 2 1.2436 1.0698 37.614 3 Median 0.53655 0.57572 NaN 1 0 Median 1.2914 1.1022 4.2219 2 0 Median 54855000 33226000 21629000 46484000 29618000 16867000 8371200 3608900 4762300 2603 1849 2671 6858;6859;6860 10717;10718;10719;10720;10721 10718 5 EAVVQEPER EAQINTAKRLLEKGKEAVVQEPERSWFQTK LLEKGKEAVVQEPERSWFQTKEERKKEKIA K E A E R S 1 1 0 0 0 1 3 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 9 0 1055.5247 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 611 619 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 3.6284E-24 157.86 3 3 0.91666 0.89044 3.9817 2 Median 0.80035 0.91587 NaN 1 0 Median 1.0499 0.86572 NaN 1 0 Median 149230000 105710000 43520000 134470000 95219000 39256000 14760000 10496000 4264100 2604 899;1099 2672 6861;6862;6863;6864;6865;6866 10722;10723;10724;10725;10726;10727;10728;10729 10722 8 EAVVWEAASMSQK GSRSELRRFQDGAIREAVVWEAASMSQKRL IREAVVWEAASMSQKRLIPHQVVTHLLALH R E A Q K R 3 0 0 0 0 1 2 0 0 0 0 1 1 0 0 2 0 1 0 2 0 0 13 0 1434.6813 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 599 611 NOL6 Nucleolar protein 6 yes no 2 7.0049E-05 83.081 2 1 1.1146 1.131 26.522 3 Median 1.1445 1.1743 5.3026 2 0 Median 0.90345 0.74518 NaN 1 0 Median 27760000 13053000 14708000 25405000 11669000 13736000 2355400 1383500 971950 2605 2038 2673 6867;6868;6869 10730;10731;10732;10733;10734 10731 1875 5 EAWEEEQEVAELLK IWTCKSTGSSQLTHKEAWEEEQEVAELLKE KEAWEEEQEVAELLKEEFPAWYEKLVLEMV K E A L K E 2 0 0 0 0 1 6 0 0 0 2 1 0 0 0 0 0 1 0 1 0 0 14 0 1701.8097 Q9UIG0 Q9UIG0 64 77 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.0369E-07 105.46 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38961000 0 38961000 38961000 0 38961000 0 0 0 2606 2103 2674 6870;6871 10735;10736 10735 2 EAYGAVTQTVR LVSDTRRVSDIQWFREAYGAVTQTVRVVAL QWFREAYGAVTQTVRVVALEQSRQQRGWVF R E A V R V 2 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 2 0 1 2 0 0 11 0 1193.6041 Q6FGV9;Q15126 Q6FGV9 120 130 PMVK Phosphomevalonate kinase yes no 2 0.0019655 79.148 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17339000 0 17339000 17339000 0 17339000 0 0 0 2607 1753 2675 6872;6873 10737;10738 10737 2 EAYLVGLFEDTNLCAIHAK LRFQSSAVMALQEAREAYLVGLFEDTNLCA VGLFEDTNLCAIHAKRVTIMPKDIQLVSRI R E A A K R 3 0 1 1 1 0 2 1 1 1 3 1 0 1 0 0 1 0 1 1 0 0 19 0 2163.067 Q5TEC6 Q5TEC6 98 116 HIST2H3PS2 Histone H3 yes yes 2;3 1.9509E-06 68.243 1 1 0.71797 0.64694 0.82618 2 Median 0.62498 0.64317 NaN 1 0 Median 0.8248 0.65073 NaN 1 0 Median 15506000 9291600 6214700 9559100 5863700 3695400 5947100 3427900 2519300 2608 1828 2676 6874;6875 10739;10740;10741;10742 10741 4 EAYPEEAYIADLDAK KVKWGDIEFPPPFGREAYPEEAYIADLDAK EAYPEEAYIADLDAKSGASLKLTLLNPKGR R E A A K S 4 0 0 2 0 0 3 0 0 1 1 1 0 0 1 0 0 0 2 0 0 0 15 0 1696.7832 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396 A0A024R1Y2 245 259 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.0005851 54.343 1 2 1.3542 1.0974 34.03 3 Median 1.5834 1.6535 NaN 1 0 Median 1.1811 0.96095 18.775 2 0 Median 16187000 7114300 9072400 10943000 4668800 6273700 5244100 2445500 2798700 2609 89 2677 6876;6877;6878 10743;10744;10745 10743 3 ECADLWPR KGEMKGSAITGPVAKECADLWPRIASNAGS ITGPVAKECADLWPRIASNAGSIA______ K E C P R I 1 1 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 8 0 1045.4651 Q9BTQ7;A0A024R1Q8;P62829;J3KTJ3 Q9BTQ7 118 125 RPL23 60S ribosomal protein L23 yes no 2 0.0038926 95.352 2 2 1.0279 1.0305 43.253 4 Median 0.61303 0.71114 1.8789 2 0 Median 1.7353 1.5031 2.8094 2 0 Median 511400000 288770000 222630000 419820000 255040000 164780000 91585000 33729000 57856000 2610 84 2678 6879;6880;6881;6882 10746;10747;10748;10749;10750;10751;10752;10753;10754 10747 9 ECDPDLCLTCGAADHWDSK AQCNTKQCPCYLAVRECDPDLCLTCGAADH DLCLTCGAADHWDSKNVSCKNCSIQRGSKK R E C S K N 2 0 0 4 3 0 1 1 1 0 2 1 0 0 1 1 1 1 0 0 0 0 19 0 2248.8824 A0A090N8E9;Q15910;F2YMM1;S4S3R8;Q75MP9;Q75MQ0 A0A090N8E9 584 602 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 5.4379E-06 64.2 2 2 1.4434 1.2786 33.512 4 Median 0.93527 0.92885 11.913 2 0 Median 2.0279 1.6388 1.8231 2 0 Median 42115000 18792000 23323000 24890000 13317000 11573000 17225000 5475300 11750000 2611 456 2679 6883;6884;6885;6886 10755;10756;10757;10758;10759;10760 10757 6 ECFVCTACR ITTGGVTYREQPWHKECFVCTACRKQLSGQ EQPWHKECFVCTACRKQLSGQRFTARDDFA K E C C R K 1 1 0 0 3 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 9 0 1201.4678 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q53T40;Q2TSB7 I0CE67 174 182 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 2 0.013656 60.118 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3286300 0 3286300 3286300 0 3286300 0 0 0 2612 478 2680 6887;6888 10761;10762 10762 2 ECGQLLISENQK TRQRKCGFCKSNRDKECGQLLISENQKVAA RDKECGQLLISENQKVAAHHKCMLFSSALV K E C Q K V 0 0 1 0 1 2 2 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 12 0 1417.6871 A0A0D9SGE8;Q8IWS0;Q5JRC6 A0A0D9SGE8 27 38 PHF6 PHD finger protein 6 yes no 2 9.881E-23 156.48 2 2 0.80117 0.76371 4.2316 4 Median 0.66742 0.75057 1.3726 2 0 Median 0.98453 0.79422 4.4582 2 0 Median 234330000 128140000 106200000 190990000 106100000 84890000 43343000 22036000 21307000 2613 528 2681 6889;6890;6891;6892 10763;10764;10765;10766;10767;10768;10769 10769 7 ECLPLIIFLR GVFAPRPSTGPHKLRECLPLIIFLRNRLKY PHKLRECLPLIIFLRNRLKYALTGDEVKKI R E C L R N 0 1 0 0 1 0 1 0 0 2 3 0 0 1 1 0 0 0 0 0 0 0 10 0 1272.7264 B2R491;P62701;Q96IR1;Q53HV1;B7Z1M6 B2R491 40 49 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 0.00013321 96.253 2 0.93718 1.0154 5.3368 2 Median 0.93718 1.0154 5.3368 2 0 Median NaN NaN NaN 0 0 Median 85745000 44267000 41478000 85745000 44267000 41478000 0 0 0 2614 824 2682 6893;6894 10770;10771;10772;10773 10773 4 ECLQHELQTIR LRNKELKLQESEKEKECLQHELQTIRGDLE EKEKECLQHELQTIRGDLETSNLQDMQSQE K E C I R G 0 1 0 0 1 2 2 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1425.7034 P49454 P49454 1232 1242 CENPF Centromere protein F yes yes 3 0.02898 28.624 1 0.94089 0.96456 NaN 1 Median 0.94089 0.96456 NaN 1 0 Median NaN NaN NaN 0 0 Median 14413000 7044200 7368700 14413000 7044200 7368700 0 0 0 2615 1581 2683 6895 10774 10774 1 ECLSVWNIK QDHVAVLGSPLAASKECLSVWNIKFQTLQT PLAASKECLSVWNIKFQTLQTSKELPQGTS K E C I K F 0 0 1 0 1 0 1 0 0 1 1 1 0 0 0 1 0 1 0 1 0 0 9 0 1147.5696 Q9H8H0 Q9H8H0 285 293 NOL11 Nucleolar protein 11 yes yes 2 0.023452 56.177 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6781900 4990000 1791900 4990000 4990000 0 1791900 0 1791900 2616 2042 2684 6896;6897 10775;10776 10775 2 ECPSDECGAGVFMASHFDR YYKVDENGKISRLRRECPSDECGAGVFMAS DECGAGVFMASHFDRHYCGKCCLTYCFNKP R E C D R H 2 1 0 2 2 0 2 2 1 0 0 0 1 2 1 2 0 0 0 1 0 0 19 0 2170.8507 Q5RKT7;B2RDW1;P62979;Q8WYN9 Q5RKT7 120 138 RPS27A;HEL112 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes no 3 1.3047E-30 139.11 2 4 1.1141 0.92982 46.179 6 Median 1.3065 1.5288 2.1345 2 0 Median 0.83061 0.71507 30.912 4 0 Median 702800000 316530000 386270000 598950000 257880000 341070000 103850000 58657000 45197000 2617 891 2685;2686 6898;6899;6900;6901;6902;6903 10777;10778;10779;10780;10781;10782;10783;10784 10780 699 8 ECSFCEDPR PVTLTEMNYSKYGAKECSFCEDPRFARTGV SKYGAKECSFCEDPRFARTGVCISCDAGMC K E C P R F 0 1 0 1 2 0 2 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 9 0 1198.4383 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 440 448 PHF14 PHD finger protein 14 yes no 2 0.0018606 79.906 2 2 1.028 0.94019 44.71 4 Median 0.62294 0.61812 13.342 2 0 Median 1.5641 1.3249 2.5371 2 0 Median 31946000 16959000 14987000 24156000 13653000 10503000 7789900 3306200 4483800 2618 590 2687 6904;6905;6906;6907 10785;10786;10787;10788;10789;10790 10787 6 ECSVTSDLDFPTQVIPLK PVHILTSVSSLRGTRECSVTSDLDFPTQVI VTSDLDFPTQVIPLKTLNAVASVPIMYSWS R E C L K T 0 0 0 2 1 1 1 0 0 1 2 1 0 1 2 2 2 0 0 2 0 0 18 0 2048.0136 A0A090N8E9;Q15910;B7Z8K5;Q6R125;G3XAL2;Q59H64 A0A090N8E9 82 99 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 2 8.177E-10 101.39 2 2 1.7606 1.4114 19.341 3 Median 0.97273 1.0151 NaN 1 0 Median 1.7911 1.4188 0.74282 2 0 Median 52698000 21098000 31600000 16774000 8513700 8260400 35924000 12584000 23340000 2619 456 2688 6908;6909;6910;6911 10791;10792;10793;10794 10792 4 ECVAPHMADIGSVTSSASGPAQSVAK QVLTAATQSLKEILKECVAPHMADIGSVTS SVTSSASGPAQSVAKMFRAVEEGLTYKFHA K E C A K M 5 0 0 1 1 1 1 2 1 1 0 1 1 0 2 5 1 0 0 3 0 0 26 0 2556.1948 B3KMR5;Q5JTH9;B3KY97 B3KMR5 445 470 RRP12 RRP12-like protein yes no 3 1.2836E-12 65.213 1 0.95381 0.99404 NaN 1 Median 0.95381 0.99404 NaN 1 0 Median NaN NaN NaN 0 0 Median 11679000 6670100 5008900 11679000 6670100 5008900 0 0 0 2620 907 2689 6912 10795 10795 729 1 EDAAGTSGLGELNSR KVSDEREGTTKGNEKEDAAGTSGLGELNSR EDAAGTSGLGELNSREQTNQSLRKGKKKKR K E D S R E 2 1 1 1 0 0 2 3 0 0 2 0 0 0 0 2 1 0 0 0 0 0 15 0 1475.6852 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 266 280 GPATCH4 G patch domain-containing protein 4 yes no 2 1.6613E-15 134.08 2 2 1.6087 1.6082 17.459 4 Median 1.1954 1.3668 4.7766 2 0 Median 2.1303 1.8421 0.97113 2 0 Median 298640000 108070000 190570000 225970000 83867000 142110000 72665000 24203000 48462000 2621 1820 2690 6913;6914;6915;6916 10796;10797;10798;10799;10800;10801;10802;10803 10798 8 EDAGDNDDTEGAIGVR RMELREHGEKKKRSREDAGDNDDTEGAIGV DAGDNDDTEGAIGVRNKVAGGKMKKRKGR_ R E D V R N 2 1 1 4 0 0 2 3 0 1 0 0 0 0 0 0 1 0 0 1 0 0 16 0 1632.6863 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 419 434 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2 1.907E-44 164.9 2 2 1.139 1.0974 9.1882 4 Median 1.0544 1.1934 2.4166 2 0 Median 1.2475 1.0199 0.91481 2 0 Median 198710000 97077000 101630000 167710000 83679000 84029000 30999000 13397000 17601000 2622 313 2691 6917;6918;6919;6920 10804;10805;10806;10807;10808;10809;10810 10805 7 EDALDYLIGGLYHEK TRLNIQDVREVVNMKEDALDYLIGGLYHEK EDALDYLIGGLYHEKTDTLHVIGGTNKGRI K E D E K T 1 0 0 2 0 0 2 2 1 1 3 1 0 0 0 0 0 0 2 0 0 0 15 0 1734.8465 A0A024R667;Q96FK6 A0A024R667 271 285 C14orf150;WDR89 WD repeat-containing protein 89 yes no 2 0.0031794 42.809 1 0.82886 0.83083 NaN 1 Median 0.82886 0.83083 NaN 1 0 Median NaN NaN NaN 0 0 Median 5559400 3076800 2482600 5559400 3076800 2482600 0 0 0 2623 198 2692 6921 10811 10811 1 EDALELTEK IAKSKQEKRERQAQREDALELTEKLDQDWK ERQAQREDALELTEKLDQDWKEIQTLLSHK R E D E K L 1 0 0 1 0 0 3 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1046.5132 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 212 220 NOP14 Nucleolar protein 14 yes no 2 1.885E-05 119.21 2 1.0966 1.2327 1.0944 2 Median 1.0966 1.2327 1.0944 2 0 Median NaN NaN NaN 0 0 Median 138590000 64480000 74109000 138590000 64480000 74109000 0 0 0 2624 790 2693 6922;6923 10812;10813;10814;10815 10812 4 EDALLYQSK NSTRGDADMYDLPKKEDALLYQSKGYNDDY YDLPKKEDALLYQSKGYNDDYYEESYFTTR K E D S K G 1 0 0 1 0 1 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1065.5342 P50402;Q5HY57 P50402 80 88 EMD Emerin yes no 2 0.00087207 93.178 1 0.86949 0.85332 NaN 1 Median 0.86949 0.85332 NaN 1 0 Median NaN NaN NaN 0 0 Median 20458000 9607800 10850000 20458000 9607800 10850000 0 0 0 2625 1590 2694 6924 10816;10817;10818 10818 3 EDAMAMVDHCLK LMRMKSQAFIEMETREDAMAMVDHCLKKAL ETREDAMAMVDHCLKKALWFQGRCVKVDLS R E D L K K 2 0 0 2 1 0 1 0 1 0 1 1 2 0 0 0 0 0 0 1 0 0 12 0 1418.5992 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;H0Y8T4;Q5CZA7;B4DF66;B3KM87;B4DRS1;Q9H4N1 D6REM6 543 554 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 2 0.00022398 76.228 2 2.4798 2.4875 3.8432 2 Median 2.4798 2.4875 3.8432 2 0 Median NaN NaN NaN 0 0 Median 21887000 6195600 15691000 21887000 6195600 15691000 0 0 0 2626 542 2695 6925;6926 10819;10820 10820 397;398 2 EDCFFYSLVFDPVQK TLLNETDILSQYLEKEDCFFYSLVFDPVQK EDCFFYSLVFDPVQKTLLADQGEIRVGCKY K E D Q K T 0 0 0 2 1 1 1 0 0 0 1 1 0 3 1 1 0 0 1 2 0 0 15 0 1892.8655 A0A024R534;O94776 A0A024R534 124 138 MTA2 Metastasis-associated protein MTA2 yes no 2 8.8784E-06 93.839 2 0.7909 0.78745 1.7232 2 Median 0.7909 0.78745 1.7232 2 0 Median NaN NaN NaN 0 0 Median 23257000 13562000 9694500 23257000 13562000 9694500 0 0 0 2627 168 2696 6927;6928 10821;10822;10823;10824 10822 4 EDCSPDEFIDVIVGNR ILHEYKIFNAEVLFREDCSPDEFIDVIVGN DCSPDEFIDVIVGNRVYMPCLYVYNKIDQI R E D N R V 0 1 1 3 1 0 2 1 0 2 0 0 0 1 1 1 0 0 0 2 0 0 16 0 1863.8309 A8MZF9;P55039;Q59FW9 A8MZF9 221 236 DRG2 Developmentally-regulated GTP-binding protein 2 yes no 2 0.0035069 41.052 2 2.6464 2.8224 NaN 1 Median 2.6464 2.8224 NaN 1 0 Median NaN NaN NaN 0 0 Median 5876000 1196400 4679600 5876000 1196400 4679600 0 0 0 2628 801 2697 6929;6930 10825;10826 10825 2 EDDALWPPPDR MEELKRIIDDSEITKEDDALWPPPDRVGRQ EITKEDDALWPPPDRVGRQELEIVIGDEHI K E D D R V 1 1 0 3 0 0 1 0 0 0 1 0 0 0 3 0 0 1 0 0 0 0 11 0 1309.5939 F5H6P7;A0A023T6R1;P61326;Q96A72;F5H3U9;F5H6N1 F5H6P7 28 38 MAGOHB;FLJ10292;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 yes no 2 0.038787 45.022 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2629 3 2698 6931 10827 10827 1 EDEAPILEQR RQRKGRDTGPGKRKREDEAPILEQRENRMN GKRKREDEAPILEQRENRMNPLRCPVKFYE R E D Q R E 1 1 0 1 0 1 3 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1198.583 A6NHB5;Q14202;A6NHN7 A6NHB5 1279 1288 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 2.6362E-06 110.76 2 1 0.87154 0.9008 36.055 3 Median 0.81518 0.86586 5.5933 2 0 Median 1.7917 1.6107 NaN 1 0 Median 69380000 37487000 31893000 67123000 36535000 30589000 2256700 952890 1303900 2630 681 2699 6932;6933;6934 10828;10829;10830;10831 10829 4 EDEEEDDDVVAPKPPIEPEEEK TYTKETQTPVMAQPKEDEEEDDDVVAPKPP DVVAPKPPIEPEEEKTLKKDEENDSKAPPH K E D E K T 1 0 0 4 0 0 8 0 0 1 0 2 0 0 4 0 0 0 0 2 0 0 22 1 2537.1181 E7EQU2;E7ESD3;E7EMU4;E7EV09;E7EQL5;Q59GU5;A0A140VKE9;Q13409 E7EQU2 144 165 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes no 3 0.001025 31.917 1 2.325 2.7278 NaN 1 Median 2.325 2.7278 NaN 1 0 Median NaN NaN NaN 0 0 Median 13442000 3603200 9839100 13442000 3603200 9839100 0 0 0 2631 625 2700 6935 10832;10833 10833 2 EDEEEDEPVVIK SPAFALKNRIRMPTKEDEEEDEPVVIKAQP PTKEDEEEDEPVVIKAQPVPHYGVPFKPQI K E D I K A 0 0 0 2 0 0 5 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 12 0 1429.646 Q643R0;Q9ULW0;B3KM90 Q643R0 501 512 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 3.5917E-47 174.02 3 2 1.3682 1.082 31.115 3 Median 0.59751 0.65244 NaN 1 0 Median 1.3847 1.1155 4.3085 2 0 Median 101670000 36765000 64902000 82082000 29615000 52466000 19585000 7149400 12436000 2632 1837 2701 6936;6937;6938;6939;6940 10834;10835;10836;10837;10838;10839;10840 10836 7 EDEISLEDLIER PPGFVLKKDKKKEEKEDEISLEDLIERERS EEKEDEISLEDLIERERSALGPNVTKITLE K E D E R E 0 1 0 2 0 0 4 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1459.7042 B7Z592;Q8WU90 B7Z592 227 238 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes no 2 0.0003692 72.006 1 1.7063 1.7384 NaN 1 Median 1.7063 1.7384 NaN 1 0 Median NaN NaN NaN 0 0 Median 6963700 2484900 4478800 6963700 2484900 4478800 0 0 0 2633 1093 2702 6941 10841;10842 10841 2 EDEQQQALQDIASR QEVDEFLLRLSKLTKEDEQQQALQDIASRC KEDEQQQALQDIASRCTANDLKCIIRLIKH K E D S R C 2 1 0 2 0 4 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 14 0 1629.7594 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 390 403 LIG3 DNA ligase 3;DNA ligase yes no 2 3.4817E-98 231.17 2 2 0.55842 0.58216 9.5094 4 Linear 0.54071 0.57333 3.3982 2 0 Median 0.57913 0.49014 3.7415 2 0 Median 70114000 46404000 23710000 55420000 36634000 18786000 14694000 9770500 4923600 2634 1589 2703 6942;6943;6944;6945 10843;10844;10845;10846;10847;10848;10849;10850;10851 10846 9 EDFELQLNK QELAGYTGGDVSFIKEDFELQLNKQLIFDS DVSFIKEDFELQLNKQLIFDSVFSASFWGG K E D N K Q 0 0 1 1 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1134.5557 Q9Y512 Q9Y512 298 306 SAMM50 Sorting and assembly machinery component 50 homolog no no 2 0.0011206 89.698 2 2 1.4554 1.3058 19.857 4 Median 1.172 1.2078 0.77349 2 0 Median 2.0042 1.6073 19.122 2 0 Median 66052000 31560000 34492000 58174000 28691000 29483000 7877300 2868500 5008800 2635 2147 2704 6946;6947;6948;6949 10852;10853;10854;10855;10856 10855 5 EDFHSYLPIIDPILSK AVGEHEKVINNQKEKEDFHSYLPIIDPILS DFHSYLPIIDPILSKSKSYKNEVTPSSTTA K E D S K S 0 0 0 2 0 0 1 0 1 3 2 1 0 1 2 2 0 0 1 0 0 0 16 0 1885.9826 Q8IZT6;B3KWI2 Q8IZT6 539 554 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 0.00022801 48.177 2 0.87924 0.89475 8.5084 2 Median 0.87924 0.89475 8.5084 2 0 Median NaN NaN NaN 0 0 Median 15450000 7989400 7460900 15450000 7989400 7460900 0 0 0 2636 1902 2705 6950;6951 10857;10858;10859;10860;10861 10858 5 EDFVLSITGK RLLAKLRKDIRPECREDFVLSITGKKAPGC RPECREDFVLSITGKKAPGCVLSNPDQKGK R E D G K K 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 1 1 0 0 1 0 0 10 0 1107.5812 Q6FI30;B7Z4T6;P08651 Q6FI30 81 90 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 2 0.00056044 70.056 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9837000 0 9837000 9837000 0 9837000 0 0 0 2637 1091 2706 6952;6953;6954;6955 10862;10863;10864;10865 10864 4 EDFVLTVTGK RLLAKLRKDIRPEYREDFVLTVTGKKPPCC RPEYREDFVLTVTGKKPPCCVLSNPDQKGK R E D G K K 0 0 0 1 0 0 1 1 0 0 1 1 0 1 0 0 2 0 0 2 0 0 10 0 1107.5812 A0A1B0GW37;U3KQE8;Q5VW28;A0A1B0GWJ4;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWI9;Q5VW27;Q5VW30;Q5VW26;O00712;B4DS74;U3KPY9;A0A087WXP2;Q5W0Y9;A0A0S2Z4H3;A0A1B0GVN4;A0A1B0GTC1;B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857;S4R3K4 B1AKN6 89 98 NFIB;NFIA Nuclear factor 1;Nuclear factor 1 B-type;Nuclear factor 1 A-type no no 2 0.00040024 80.755 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20855000 20855000 0 19131000 19131000 0 1724000 1724000 0 2638 816;473 2707 6956;6957;6958 10866;10867;10868 10867 3 EDGAISTIVLR SEVGDTQVVVFKHEKEDGAISTIVLRGSTD KHEKEDGAISTIVLRGSTDNLMDDIERAVD K E D L R G 1 1 0 1 0 0 1 1 0 2 1 0 0 0 0 1 1 0 0 1 0 0 11 0 1172.6401 Q7Z759;Q53HU0;P50990 Q7Z759 317 327 CCT8 T-complex protein 1 subunit theta yes no 2 5.7494E-16 132.01 2 1 1.8475 1.6516 NaN 1 Median NaN NaN NaN 0 0 Median 1.8475 1.6516 NaN 1 0 Median 54471000 663910 53807000 52498000 0 52498000 1973000 663910 1309100 2639 1592 2708 6959;6960;6961 10869;10870;10871;10872 10871 4 EDGELNLMK KIDISAVVAYTIAVKEDGELNLMKKAASIT YTIAVKEDGELNLMKKAASITSEVFNKFFK K E D M K K 0 0 1 1 0 0 2 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1047.4907 Q9Y5B9;Q0VGA3 Q9Y5B9 176 184 SUPT16H FACT complex subunit SPT16 yes no 2 6.6197E-12 152.47 2 1 1.0297 1.1657 49.156 3 Median 1.0424 1.1743 1.0378 2 0 Median 0.62505 0.50127 NaN 1 0 Median 176420000 90196000 86229000 168190000 85460000 82728000 8237400 4736100 3501200 2640 2148 2709 6962;6963;6964 10873;10874;10875;10876;10877 10874 1988 5 EDGELNLMKK KIDISAVVAYTIAVKEDGELNLMKKAASIT TIAVKEDGELNLMKKAASITSEVFNKFFKE K E D K K A 0 0 1 1 0 0 2 1 0 0 2 2 1 0 0 0 0 0 0 0 0 0 10 1 1175.5856 Q9Y5B9;Q0VGA3 Q9Y5B9 176 185 SUPT16H FACT complex subunit SPT16 yes no 2 0.00035305 95.605 2 1.1196 1.2943 30.486 2 Median 1.1196 1.2943 30.486 2 0 Median NaN NaN NaN 0 0 Median 24863000 10435000 14428000 24863000 10435000 14428000 0 0 0 2641 2148 2710 6965;6966 10878;10879 10879 1988 2 EDGLAQQQTQLNLR SKADEASELACPTPKEDGLAQQQTQLNLRS KEDGLAQQQTQLNLRSLLVNPEGPTLMRLN K E D L R S 1 1 1 1 0 4 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 14 0 1612.8169 A0A0U1RQF0;P49327 A0A0U1RQF0 2205 2218 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.212E-06 109.11 2 1 1.3656 1.3143 59.699 2 Median 1.8561 2.0045 NaN 1 0 Median 1.0047 0.86168 NaN 1 0 Median 37979000 19207000 18772000 33513000 16967000 16546000 4465500 2239400 2226000 2642 587 2711 6967;6968;6969 10880;10881;10882;10883 10883 4 EDGMVPFVFVGTK VRVRIEGDNENKLPREDGMVPFVFVGTKES PREDGMVPFVFVGTKESIGNVQVLLEYHIA R E D T K E 0 0 0 1 0 0 1 2 0 0 0 1 1 2 1 0 1 0 0 3 0 0 13 0 1424.701 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 329 341 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.0010943 54.486 1 1.2155 1.2013 NaN 1 Median 1.2155 1.2013 NaN 1 0 Median NaN NaN NaN 0 0 Median 19349000 9471200 9878000 19349000 9471200 9878000 0 0 0 2643 531 2712 6970 10884 10884 389 1 EDGQEYAQVIK GKNENESEKRELVFKEDGQEYAQVIKMLGN LVFKEDGQEYAQVIKMLGNGRLEALCFDGV K E D I K M 1 0 0 1 0 2 2 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 11 0 1278.6092 A6NJH9;P47813;O14602 A6NJH9 30 40 EIF1AY;EIF1AX Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2 9.3155E-12 122.33 1 1 1.0435 0.84252 NaN 1 Median NaN NaN NaN 0 0 Median 1.0435 0.84252 NaN 1 0 Median 14160000 1247400 12913000 11378000 0 11378000 2781800 1247400 1534400 2644 687 2713 6971;6972 10885;10886 10885 2 EDGSGDRGDGPFR CDISLQFFLPFSLGKEDGSGDRGDGPFRLG GKEDGSGDRGDGPFRLGGHGPSFPLKGITE K E D F R L 0 2 0 3 0 0 1 4 0 0 0 0 0 1 1 1 0 0 0 0 0 0 13 1 1363.5753 P13010;Q53T09 P13010 172 184 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 6.8702E-13 153.97 4 1 0.32252 0.35196 18.568 5 Median 0.32679 0.35665 6.6589 4 0 Median 0.29847 0.24361 NaN 1 0 Median 514630000 383260000 131370000 477300000 354540000 122760000 37326000 28718000 8607500 2645 1476 2714 6973;6974;6975;6976;6977 10887;10888;10889;10890;10891;10892;10893 10892 7 EDHEVEVGVLK VSERRLNQEVALNLKEDHEVEVGVLKESVD LNLKEDHEVEVGVLKESVDLPEEKLPISDS K E D L K E 0 0 0 1 0 0 3 1 1 0 1 1 0 0 0 0 0 0 0 3 0 0 11 0 1252.6299 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1488 1498 AHCTF1 Protein ELYS yes no 2 7.6531E-65 197.27 2 2 2.7338 2.1869 5.8053 2 Median NaN NaN NaN 0 0 Median 2.7338 2.1869 5.8053 2 0 Median 85574000 6535600 79038000 61731000 0 61731000 23843000 6535600 17307000 2646 1945 2715 6978;6979;6980;6981 10894;10895;10896;10897;10898;10899 10894 6 EDHLMSAMNIK FRAQEIDGQALLLLKEDHLMSAMNIKLGPA LLLKEDHLMSAMNIKLGPALKIYARISMLK K E D I K L 1 0 1 1 0 0 1 0 1 1 1 1 2 0 0 1 0 0 0 0 0 0 11 0 1287.5951 B3KPJ4;B4DG61;B7ZLY0;A0A0A0MSI2;Q8IXK0;H7C528;A5YM43;Q8NDX5 B3KPJ4 437 447 PHC2;PHC3 Polyhomeotic-like protein 2;Polyhomeotic-like protein 3 no no 2 0.0098617 43.651 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4470400 0 4470400 4470400 0 4470400 0 0 0 2647 479;677 2716 6982 10900 10900 327;328 1 EDHPDLIQNAK QREKQEFERNLARFREDHPDLIQNAKKSDI ARFREDHPDLIQNAKKSDIPEKPKTPQQLW R E D A K K 1 0 1 2 0 1 1 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 11 0 1278.6204 E9PKP7;P17480;A8K962;B4DNQ1;O00164;Q05BZ1 E9PKP7 181 191 UBTF Nucleolar transcription factor 1 yes no 2 0.047113 55.908 1 0.6595 0.66799 NaN 1 Median 0.6595 0.66799 NaN 1 0 Median NaN NaN NaN 0 0 Median 5773700 3578400 2195200 5773700 3578400 2195200 0 0 0 2648 1244 2717 6983 10901 10901 0 EDIDAAIETYNLLSER RPQHMLMRVSVGIHKEDIDAAIETYNLLSE DIDAAIETYNLLSERWFTHASPTLFNAGTN K E D E R W 2 1 1 2 0 0 3 0 0 2 2 0 0 0 0 1 1 0 1 0 0 0 16 0 1850.8898 B4DNN4;Q53GZ5;P23921;B4E0I8;B4DS95 B4DNN4 151 166 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 8.5568E-09 100.55 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15502000 783520 14719000 14719000 0 14719000 783520 783520 0 2649 1014 2718 6984;6985 10902;10903 10902 2 EDIIQGFR TVYCLNDDDETEVLKEDIIQGFRYGSDIVP DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ K E D F R Y 0 1 0 1 0 1 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 8 0 976.49779 P13010;Q53T09 P13010 308 315 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 2.5117E-21 185.22 2 2 0.3299 0.32839 31.304 4 Median 0.36738 0.43151 1.4617 2 0 Median 0.29145 0.25097 0.85776 2 0 Median 890690000 650880000 239800000 825080000 600720000 224350000 65610000 50162000 15448000 2650 1476 2719 6986;6987;6988;6989 10904;10905;10906;10907;10908;10909;10910 10906 7 EDILNYLEK LSEVVGSGKDGRILKEDILNYLEKQTGAIL DGRILKEDILNYLEKQTGAILPPSPKVEIM K E D E K Q 0 0 1 1 0 0 2 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 9 0 1135.5761 P11182;B4E1Q7;Q5VVL7 P11182 203 211 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 2 0.014195 59.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2651 1469 2720 6990 10911 10911 1 EDILVTLNDLIK TFSECLNLINEGCPKEDILVTLNDLIKNIP CPKEDILVTLNDLIKNIPDAKKLVKYWICL K E D I K N 0 0 1 2 0 0 1 0 0 2 3 1 0 0 0 0 1 0 0 1 0 0 12 0 1384.7813 B2RMQ4;Q8WWK9 B2RMQ4 440 451 CKAP2 Cytoskeleton-associated protein 2 yes no 2 1.8219E-22 150.81 2 0.78782 0.86108 5.6601 2 Median 0.78782 0.86108 5.6601 2 0 Median NaN NaN NaN 0 0 Median 90264000 52139000 38125000 90264000 52139000 38125000 0 0 0 2652 895 2721 6991;6992 10912;10913;10914;10915 10912 4 EDINLSVR VHVEVHQRGSSTAKKEDINLSVRKLLNRHN GSSTAKKEDINLSVRKLLNRHNIVFGDYTW K E D V R K 0 1 1 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 944.49271 Q15645;H0YAL2 Q15645 36 43 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 0.042516 57.047 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2653 1763 2722 6993 10916 10916 1 EDISSIEIVGGATR EPPLKAVMEQANLQREDISSIEIVGGATRI REDISSIEIVGGATRIPAVKEQITKFFLKD R E D T R I 1 1 0 1 0 0 2 2 0 3 0 0 0 0 0 2 1 0 0 1 0 0 14 0 1445.7362 B3KNM0;Q53ZP9;A0A140VKE7;B4DZR0;O95757;D6RJ96;E9PDE8;B4DXT2 B3KNM0 333 346 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.00014105 91.914 3 1.3845 1.3811 NaN 1 Median 1.3845 1.3811 NaN 1 0 Median NaN NaN NaN 0 0 Median 31552000 14152000 17400000 31552000 14152000 17400000 0 0 0 2654 624 2723 6994;6995;6996 10917;10918;10919 10919 3 EDITQEFPGK YDMEIIEEEAFLAWKEDITQEFPGKGKALF FLAWKEDITQEFPGKGKALFQVNQWLTWLE K E D G K G 0 0 0 1 0 1 2 1 0 1 0 1 0 1 1 0 1 0 0 0 0 0 10 0 1162.5506 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89;H0YE22 D3DQV9 871 880 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.013857 59.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12181000 12181000 0 12181000 12181000 0 0 0 0 2655 1054 2724 6997 10920 10920 1 EDITQSAQHALR KEATDAIGHLDRQQREDITQSAQHALRLAA QQREDITQSAQHALRLAAFGQLHKVLGMDP R E D L R L 2 1 0 1 0 2 1 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 12 0 1367.6793 F4ZW64;F4ZW65;A0A024R7C7;F4ZW66;Q12906;A8K590;Q59GP7;B4DFG4 F4ZW64 312 323 ILF3 Interleukin enhancer-binding factor 3 yes no 2;3 0.00022365 87.913 3 1 1.5167 1.4146 15.444 2 Median 1.6032 1.5779 NaN 1 0 Median 1.4348 1.2683 NaN 1 0 Median 30498000 5695200 24803000 29132000 4870100 24262000 1366000 825100 540910 2656 220 2725 6998;6999;7000;7001 10921;10922;10923;10924;10925 10923 5 EDKYEEEIK NLKCLSAAEEKYSQKEDKYEEEIKILTDKL EKYSQKEDKYEEEIKILTDKLKEAETRAEF K E D I K I 0 0 0 1 0 0 4 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 9 1 1181.5452 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;Q8NAG3;B4DWT5;Q5VU61;J3KN67;M1VPF4;P06753;Q6LDX7;Q5VU62;B4DQ80;Q8NAH0;Q8NI98;K7EPB9;B4DVY2;V9HW56;P67936;B4DTB1;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951;K7EMU5;U3KQK2 Q5HYB6 166 174 DKFZp686J1372;TPM3;TPM3-ROS1;HEL-S-82p;OK/SW-cl.5;TPM4;HEL-S-108;HEL-S-273;TPM2;TPM2b Tyrosine-protein kinase receptor;Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 2 5.0842E-07 140.17 2 1 2.4954 2.8535 21.189 3 Median 2.5984 3.0361 8.7745 2 0 Median 2.4954 2.1375 NaN 1 0 Median 82534000 20626000 61908000 78300000 19247000 59053000 4233700 1379100 2854600 + 2657 562;1043 2726 7002;7003;7004 10926;10927;10928;10929;10930;10931 10928 6 EDLAAFVEELDK EVNDLKRKSPSDLWKEDLAAFVEELDKVES LWKEDLAAFVEELDKVESQEREDVLAGMSG K E D D K V 2 0 0 2 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 0 1377.6664 Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;B7ZB27;Q6W6M6 Q71UH4 1159 1170 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 1.5678E-22 152.54 2 2 0.74521 0.70555 13.45 4 Median 0.56256 0.63318 0.1022 2 0 Median 0.99798 0.79839 2.2814 2 0 Median 232970000 137480000 95493000 190930000 116250000 74676000 42044000 21226000 20818000 2658 1679 2727 7005;7006;7007;7008 10932;10933;10934;10935;10936;10937;10938;10939;10940 10933 9 EDLATFIEELEAVEAK ELDTLKRKSPSDLWKEDLATFIEELEAVEA DLATFIEELEAVEAKEKQDEQVGLPGKGGK K E D A K E 3 0 0 1 0 0 5 0 0 1 2 1 0 1 0 0 1 0 0 1 0 0 16 0 1805.8935 P11388 P11388 1169 1184 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.5414E-95 225.15 5 1 13.408 0.83796 154.83 3 Plateau 0.73283 0.82771 1.7413 2 0 Median 13.569 12.091 NaN 1 0 Median 1318600000 607330000 711260000 901040000 422890000 478150000 417550000 184440000 233110000 2659 1471 2728 7009;7010;7011;7012;7013;7014 10941;10942;10943;10944;10945;10946;10947;10948;10949 10949 9 EDLCISPGK QFIADVIENSQIIQKEDLCISPGKLVWVLY SQIIQKEDLCISPGKLVWVLYCDLICLDYD K E D G K L 0 0 0 1 1 0 1 1 0 1 1 1 0 0 1 1 0 0 0 0 0 0 9 0 1017.4801 Q96B26;Q5JXM0 Q96B26 122 130 EXOSC8;DKFZp564C0482 Exosome complex component RRP43 yes no 2 0.013595 56.434 1 0.8514 0.86405 NaN 1 Median 0.8514 0.86405 NaN 1 0 Median NaN NaN NaN 0 0 Median 13505000 8633000 4872100 13505000 8633000 4872100 0 0 0 2660 1959 2729 7015 10950 10950 1 EDLLDQLK VGHDRYLVVGRKRRKEDLLDQLKQEGQVGH VGRKRRKEDLLDQLKQEGQVGHYELVMPQA K E D L K Q 0 0 0 2 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 972.51278 Q6NUN2;A3F769;O15226;A3F768;A2I829 Q6NUN2 667 674 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.010573 71.922 2 0.90859 0.94272 3.65 2 Median 0.90859 0.94272 3.65 2 0 Median NaN NaN NaN 0 0 Median 53705000 29689000 24016000 53705000 29689000 24016000 0 0 0 2661 655 2730 7016;7017 10951;10952;10953;10954;10955 10955 5 EDLMGLAIGTHGANIQQAR SKQLAAAFQEEFTVREDLMGLAIGTHGANI GLAIGTHGANIQQARKVPGVTAIELGEETC R E D A R K 3 1 1 1 0 2 1 3 1 2 2 0 1 0 0 0 1 0 0 0 0 0 19 0 1994.0004 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29;A0A087WWR6;P51116 P51116 237 255 FMR1;FXR2 Fragile X mental retardation protein 1;Fragile X mental retardation syndrome-related protein 2 no no 3 1.0305E-06 81.723 3 1.6754 1.8782 5.2157 3 Plateau 1.6754 1.8782 5.2157 3 0 Plateau NaN NaN NaN 0 0 Median 105860000 43303000 62561000 105860000 43303000 62561000 0 0 0 2662 1593;1689 2731 7018;7019;7020 10956;10957;10958;10959;10960 10957 1377 5 EDLMGLAIGTHGSNIQQAR TKQLAAAFHEEFVVREDLMGLAIGTHGSNI GLAIGTHGSNIQQARKVPGVTAIELDEDTG R E D A R K 2 1 1 1 0 2 1 3 1 2 2 0 1 0 0 1 1 0 0 0 0 0 19 0 2009.9953 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 227 245 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 1.0305E-06 81.723 4 1.4997 1.5767 8.0454 2 Median 1.4997 1.5767 8.0454 2 0 Median NaN NaN NaN 0 0 Median 71611000 24972000 46640000 71611000 24972000 46640000 0 0 0 2663 531 2732 7021;7022;7023;7024 10961;10962;10963;10964;10965;10966 10961 390 6 EDLNCQEEEDPMNK TTVSDDVSMTFITSKEDLNCQEEEDPMNKL KEDLNCQEEEDPMNKLKGQKIVSCRICKGD K E D N K L 0 0 2 2 1 1 4 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 14 0 1749.6822 Q6IAM0;O75821;K7EL20;A8K5K5;B7Z1G0;K7ENA8 Q6IAM0 135 148 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 0.00058646 55.314 2 1.4884 1.6319 NaN 1 Median 1.4884 1.6319 NaN 1 0 Median NaN NaN NaN 0 0 Median 5784100 1337500 4446500 5784100 1337500 4446500 0 0 0 2664 1414 2733 7025;7026 10967;10968 10967 1107 2 EDLPAENGETK GAKGKQAEVANQETKEDLPAENGETKTEES QETKEDLPAENGETKTEESPASDEAGEKEA K E D T K T 1 0 1 1 0 0 3 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 11 0 1201.5463 A6NL93;Q6NSG7;Q3B790;A6NEL0;P05114;A0A024R2A3 A6NL93 62 72 HMGN1;hCG_1979072 Non-histone chromosomal protein HMG-14 yes no 2 9.0605E-18 142.43 3 2 0.46301 0.36774 57.451 3 Median 0.86124 0.96949 NaN 1 0 Median 0.45066 0.35875 3.5009 2 0 Median 194230000 73827000 120410000 181690000 65157000 116530000 12544000 8669400 3874900 2665 679 2734 7027;7028;7029;7030;7031 10969;10970;10971;10972;10973;10974;10975 10972 7 EDLPAENGETKTEESPASDEAGEK GAKGKQAEVANQETKEDLPAENGETKTEES TKTEESPASDEAGEKEAKSD__________ K E D E K E 3 0 1 2 0 0 7 2 0 0 1 2 0 0 2 2 2 0 0 0 0 0 24 1 2532.0987 A6NL93;Q6NSG7;Q3B790;A6NEL0;P05114;A0A024R2A3 A6NL93 62 85 HMGN1;hCG_1979072 Non-histone chromosomal protein HMG-14 yes no 3 0.0016182 26.157 2 0.45932 0.39037 3.1718 2 Median NaN NaN NaN 0 0 Median 0.45932 0.39037 3.1718 2 0 Median 63577000 43914000 19663000 0 0 0 63577000 43914000 19663000 2666 679 2735 7032;7033 10976;10977;10978 10976 3 EDLQELNDR STPLSPTRITRLQEKEDLQELNDRLAVYID TRLQEKEDLQELNDRLAVYIDRVRSLETEN K E D D R L 0 1 1 2 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1130.5204 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;W5X314 P02545 33 41 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.00056832 97.431 1 2 1.4717 1.5744 14.219 3 Plateau 1.3457 1.5744 NaN 1 0 Median 1.472 1.2325 2.1418 2 0 Median 244720000 103890000 140830000 206950000 89075000 117870000 37767000 14811000 22956000 2667 1440 2736 7034;7035;7036 10979;10980;10981;10982;10983;10984 10984 6 EDLQPVQIQSLETLGVLAR PAIMEHLREFLLTGREDLQPVQIQSLETLG PVQIQSLETLGVLARAVGEPMRPLAEECCQ R E D A R A 1 1 0 1 0 3 2 1 0 1 4 0 0 0 1 1 1 0 0 2 0 0 19 0 2108.1477 H0YN14;D3DS63;B3KTB3;B3KT38;B3KPS9;Q59FI4;Q8TEX9;B3KPY9;Q6I9Y8;B3KSQ4;Q59H62;B3KQ33;B4DXR7 H0YN14 535 553 IPO4 Importin-4 yes no 2 0.032444 31.827 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2527600 0 2527600 2527600 0 2527600 0 0 0 2668 923 2737 7037 10985 10985 1 EDLRLPEGDLGK QDGYLSLLQDSGEVREDLRLPEGDLGKEIE EVREDLRLPEGDLGKEIEQKYDCGEEILIT R E D G K E 0 1 0 2 0 0 2 2 0 0 3 1 0 0 1 0 0 0 0 0 0 0 12 1 1340.6936 I3L397;I3L504;P63241 I3L397 110 121 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 yes no 2;3 5.1014E-07 107.06 3 3.8727 4.6216 11.948 2 Median 3.8727 4.6216 11.948 2 0 Median NaN NaN NaN 0 0 Median 348500000 67442000 281060000 348500000 67442000 281060000 0 0 0 2669 1322 2738 7038;7039;7040 10986;10987;10988;10989;10990 10989 5 EDLRNEVQK E D Q K 0 1 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1129.5728 REV__Q5THJ4 yes no 3 0.0066654 47.603 1 0.73123 0.87283 NaN 1 Median 0.73123 0.87283 NaN 1 0 Median NaN NaN NaN 0 0 Median 51582000 30515000 21066000 51582000 30515000 21066000 0 0 0 + 2670 2180 2739 7041 10991 10991 1 EDLSGIAEMFK RVLNNFISNQKMDFKEDLSGIAEMFKTPVK MDFKEDLSGIAEMFKTPVKEQPQLTSTCHI K E D F K T 1 0 0 1 0 0 2 1 0 1 1 1 1 1 0 1 0 0 0 0 0 0 11 0 1238.5853 P46013;Q70L73 P46013 750 760 MKI67 Antigen KI-67 no no 2 4.7836E-09 123.86 3 6 2.5322 2.6742 29.186 9 Median 2.2912 2.6742 39.14 3 0 Plateau 3.5995 2.8865 22.573 6 0 Median 524620000 149810000 374810000 446220000 131640000 314580000 78399000 18172000 60228000 2671 1569;1864 2740;2741 7042;7043;7044;7045;7046;7047;7048;7049;7050 10992;10993;10994;10995;10996;10997;10998;10999;11000;11001;11002;11003;11004;11005 10995 1330 14 EDLTEIR LLPHIRGNVGFVFTKEDLTEIRDMLLANKV NVGFVFTKEDLTEIRDMLLANKVPAAARAG K E D I R D 0 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 874.43961 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;F8VW21;G3V210;F8VZS0;B4E3D5;Q8NHW5;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 93 99 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.009996 116.11 2 2 0.89091 1.0117 11.411 4 Linear 0.83985 0.98218 1.8235 2 0 Median 0.9628 0.82176 8.3254 2 0 Median 681850000 362210000 319640000 620800000 331800000 289000000 61046000 30408000 30638000 2672 345 2742 7051;7052;7053;7054 11006;11007;11008;11009;11010;11011;11012 11009 7 EDLTEIRDMLLANK LLPHIRGNVGFVFTKEDLTEIRDMLLANKV KEDLTEIRDMLLANKVPAAARAGAIAPCEV K E D N K V 1 1 1 2 0 0 2 0 0 1 3 1 1 0 0 0 1 0 0 0 0 0 14 1 1659.8502 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;F8VW21;G3V210;F8VZS0;B4E3D5;Q8NHW5;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 93 106 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2;3 2.4921E-05 96.229 4 1.4191 1.6926 6.3496 4 Median 1.4191 1.6926 6.3496 4 0 Median NaN NaN NaN 0 0 Median 502890000 221630000 281260000 502890000 221630000 281260000 0 0 0 2673 345 2743 7055;7056;7057;7058 11013;11014;11015;11016;11017;11018 11017 257 6 EDLVVAPAGITLK EEEHDCFLEEIMTKREDLVVAPAGITLKEA KREDLVVAPAGITLKEANEILQRSKKGKLP R E D L K E 2 0 0 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 13 0 1324.7602 H0Y4R1;P12268;B7Z1G4;Q6QE17;E7ETK5 H0Y4R1 115 127 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.01031 57.348 2 1.0614 1.0993 20.395 2 Median 1.0614 1.0993 20.395 2 0 Median NaN NaN NaN 0 0 Median 20866000 9635600 11230000 20866000 9635600 11230000 0 0 0 2674 1282 2744 7059;7060 11019;11020 11020 1 EDLWILQDQCR VLVSILKHCDVSGMKEDLWILQDQCRDPAV SGMKEDLWILQDQCRDPAVSVRKQALQSLT K E D C R D 0 1 0 2 1 2 1 0 0 1 2 0 0 0 0 0 0 1 0 0 0 0 11 0 1474.6875 P42695;G3V1A9;E9PKK4 P42695 579 589 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.0056516 64.297 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1653700 0 1653700 1653700 0 1653700 0 0 0 2675 1565 2745 7061;7062 11021;11022 11022 2 EDLWILQDQCRDPAVSVR VLVSILKHCDVSGMKEDLWILQDQCRDPAV WILQDQCRDPAVSVRKQALQSLTELLMAQP K E D V R K 1 2 0 3 1 2 1 0 0 1 2 0 0 0 1 1 0 1 0 2 0 0 18 1 2199.0743 P42695;G3V1A9;E9PKK4 P42695 579 596 NCAPD3 Condensin-2 complex subunit D3 yes no 3 0.038534 26.075 1 2.3865 2.1585 NaN 1 Median NaN NaN NaN 0 0 Median 2.3865 2.1585 NaN 1 0 Median 3637700 1623900 2013800 0 0 0 3637700 1623900 2013800 2676 1565 2746 7063 11023 11023 0 EDMTYAVR DVYRDGTGVVEFVRKEDMTYAVRKLDNTKF VVEFVRKEDMTYAVRKLDNTKFRSHEGETA K E D V R K 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 8 0 983.43823 J3KTL2;Q07955;Q59FA2;A8K1L8;J3KSR8;B7Z570 J3KTL2 166 173 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.0055718 66.682 2 1.0323 1.0602 NaN 1 Median 1.0323 1.0602 NaN 1 0 Median NaN NaN NaN 0 0 Median 37506000 10588000 26918000 37506000 10588000 26918000 0 0 0 2677 1333 2747 7064;7065 11024;11025 11025 1007 2 EDNIGNQLLR IQGRSAEEAYKQQIKEDNIGNQLLRKMGWT KQQIKEDNIGNQLLRKMGWTGGGLGKSGEG K E D L R K 0 1 2 1 0 1 1 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1170.5993 Q6NUN2;A3F769;O15226;A3F768;A2I829 Q6NUN2 551 560 NKRF;NRF NF-kappa-B-repressing factor yes no 2 4.1431E-11 119.29 2 0.7096 0.73387 NaN 1 Median 0.7096 0.73387 NaN 1 0 Median NaN NaN NaN 0 0 Median 35920000 26674000 9246300 35920000 26674000 9246300 0 0 0 2678 655 2748 7066;7067 11026;11027;11028;11029;11030 11030 5 EDPNLVPSISNK DPYNVLAPKGASGTREDPNLVPSISNKRIV GTREDPNLVPSISNKRIVGCICEEDNTSVV R E D N K R 0 0 2 1 0 0 1 0 0 1 1 1 0 0 2 2 0 0 0 1 0 0 12 0 1311.667 P10606;Q6FHM4 P10606 75 86 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes no 2 4.0239E-06 110.84 1 1.3311 1.4927 NaN 1 Median 1.3311 1.4927 NaN 1 0 Median NaN NaN NaN 0 0 Median 113580000 55275000 58306000 113580000 55275000 58306000 0 0 0 2679 1465 2749 7068 11031;11032 11032 2 EDQLLCTDCYSNEYSSK SQCRNSLVDKPFAAKEDQLLCTDCYSNEYS QLLCTDCYSNEYSSKCQECKKTIMPGTRKM K E D S K C 0 0 1 2 2 1 2 0 0 0 2 1 0 0 0 3 1 0 2 0 0 0 17 0 2110.846 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q2TSB7;Q53QP3 I0CE67 74 90 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 2 1.4136E-12 116.51 2 2.0718 2.1534 13.81 2 Median 2.0718 2.1534 13.81 2 0 Median NaN NaN NaN 0 0 Median 26822000 9469300 17352000 26822000 9469300 17352000 0 0 0 2680 478 2750 7069;7070 11033;11034;11035;11036;11037;11038;11039 11037 7 EDQPAVPGETQGDSYFTGK REMEREAEYEESVAKEDQPAVPGETQGDSY AVPGETQGDSYFTGKKTIETVKAAERIMEA K E D G K K 1 0 0 2 0 2 2 3 0 0 0 1 0 1 2 1 2 0 1 1 0 0 19 0 2024.8963 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 730 748 WDR3 WD repeat-containing protein 3 yes no 2 2.9448E-09 99.481 2 2 1.0585 1.0239 4.7182 4 Median 0.8774 0.97836 1.7044 2 0 Median 1.2872 1.0597 0.1348 2 0 Median 192050000 95043000 97011000 121960000 64466000 57493000 70096000 30578000 39519000 2681 1827 2751 7071;7072;7073;7074 11040;11041;11042;11043;11044;11045;11046 11043 7 EDQPAVPGETQGDSYFTGKK REMEREAEYEESVAKEDQPAVPGETQGDSY VPGETQGDSYFTGKKTIETVKAAERIMEAI K E D K K T 1 0 0 2 0 2 2 3 0 0 0 2 0 1 2 1 2 0 1 1 0 0 20 1 2152.9913 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 730 749 WDR3 WD repeat-containing protein 3 yes no 3 0.0002334 35.703 2 1.3996 1.1923 2.7828 2 Median NaN NaN NaN 0 0 Median 1.3996 1.1923 2.7828 2 0 Median 15217000 6177000 9040000 0 0 0 15217000 6177000 9040000 2682 1827 2752 7075;7076 11047;11048;11049 11048 3 EDQQTVLKPQFYEIK LLQQEEKVKRQERLKEDQQTVLKPQFYEIK EDQQTVLKPQFYEIKAGEEFRSFKDSATKQ K E D I K A 0 0 0 1 0 3 2 0 0 1 1 2 0 1 1 0 1 0 1 1 0 0 15 1 1864.9571 Q9BSC4;B4DS83 Q9BSC4 582 596 NOL10 Nucleolar protein 10 yes no 2;3 0.00016398 59.261 2 4 1.6361 1.3949 7.229 6 Median 1.1263 1.32 7.9188 2 0 Median 1.6899 1.4487 5.062 4 0 Median 127940000 53692000 74253000 81199000 36652000 44547000 46745000 17039000 29706000 2683 2000 2753 7077;7078;7079;7080;7081;7082 11050;11051;11052;11053;11054;11055;11056 11051 7 EDQSILCTGESGAGK YAITDTAYRSMMQDREDQSILCTGESGAGK EDQSILCTGESGAGKTENTKKVIQYLAYVA R E D G K T 1 0 0 1 1 1 2 3 0 1 1 1 0 0 0 2 1 0 0 0 0 0 15 0 1550.6883 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;Q5BKV1;E7ERA5;P35580;Q7Z406;M0QY43 A0A024R1N1 166 180 MYH9;MYH11;MYH10;MYH14 Myosin-9;Myosin-11;Myosin-10;Myosin-14 no no 2 2.4122E-38 164.9 2 2 2.0961 1.9842 28.712 4 Median 1.4138 1.5641 2.7426 2 0 Median 3.162 2.5626 5.2695 2 0 Median 158230000 63547000 94681000 141870000 59806000 82063000 16359000 3741000 12618000 2684 81;1544;1875 2754 7083;7084;7085;7086 11057;11058;11059;11060;11061;11062;11063 11060 7 EDQTEYLEER YSAYLVAEKVILHLKEDQTEYLEERRVKEV ILHLKEDQTEYLEERRVKEVVKRHSQFIGY K E D E R R 0 1 0 1 0 1 4 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1310.5626 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;Q58FF7;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;G3V2J8;Q58FF6 B4DMA2 149 158 HSP90AB1;HSP90AB3P;EL52;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4 no no 2 2.6958E-16 156.83 2 2 1.7946 1.8023 43.771 4 Median 2.2479 2.646 1.704 2 0 Median 1.4323 1.24 0.28906 2 0 Median 1184200000 360800000 823390000 1089200000 321620000 767550000 95016000 39178000 55838000 2685 379;1348;1799 2755 7087;7088;7089;7090 11064;11065;11066;11067;11068;11069;11070;11071 11067 8 EDSAPPSSVAR VQARRSRSITRKRKREDSAPPSSVARSGSC KRKREDSAPPSSVARSGSCSRTPRDVSGLR R E D A R S 2 1 0 1 0 0 1 0 0 0 0 0 0 0 2 3 0 0 0 1 0 0 11 0 1114.5255 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 554 564 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.018526 44.753 1 0.97992 0.99821 NaN 1 Median 0.97992 0.99821 NaN 1 0 Median NaN NaN NaN 0 0 Median 6996300 3251600 3744700 6996300 3251600 3744700 0 0 0 2686 1183 2756 7091 11072 11072 1 EDSAVFYELK GRAGKSGVAITFLTKEDSAVFYELKQAILE TFLTKEDSAVFYELKQAILESPVSSCPPEL K E D L K Q 1 0 0 1 0 0 2 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 10 0 1199.571 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 751 760 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.017179 47.96 1 0.89483 0.90492 NaN 1 Median 0.89483 0.90492 NaN 1 0 Median NaN NaN NaN 0 0 Median 28838000 14748000 14090000 28838000 14748000 14090000 0 0 0 2687 63 2757 7092 11073;11074;11075 11074 3 EDSAYGSQSVEQEAEK GPETRDKLPSTAEVKEDSAYGSQSVEQEAE DSAYGSQSVEQEAEKLGPPPEPPGGLCHGH K E D E K L 2 0 0 1 0 2 4 1 0 0 0 1 0 0 0 3 0 0 1 1 0 0 16 0 1755.7435 Q00653 Q00653 864 879 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes yes 2 1.616E-06 88.021 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8432500 0 8432500 8432500 0 8432500 0 0 0 2688 1674 2758 7093;7094 11076;11077 11076 2 EDSGMVPLIIPVSVPVR GVEFSEPSLATKRAREDSGMVPLIIPVSVP SGMVPLIIPVSVPVRTVDPTEAAQAGGLDE R E D V R T 0 1 0 1 0 0 1 1 0 2 1 0 1 0 3 2 0 0 0 4 0 0 17 0 1806.9914 A0A1C7CYX1;A0A0A0MSU2;A0PJD3;A0A024R689;Q6PJG2;H7C1L3 A0A1C7CYX1 518 534 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 2 0.0028649 44.299 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2706200 2706200 0 2706200 2706200 0 0 0 0 2689 638 2759 7095 11078 11078 494 1 EDSGSVPSTGPSQGTPISLK PCQWSYVTSVPSAPKEDSGSVPSTGPSQGT VPSTGPSQGTPISLKRKSAGSMCITQFMKK K E D L K R 0 0 0 1 0 1 1 3 0 1 1 1 0 0 3 5 2 0 0 1 0 0 20 0 1942.9484 D6W625;Q13111 D6W625 851 870 CHAF1A Chromatin assembly factor 1 subunit A yes no 2 8.0209E-05 45.115 3 0.8987 0.90743 12.617 2 Median 0.8987 0.90743 12.617 2 0 Median NaN NaN NaN 0 0 Median 19981000 11552000 8428400 19981000 11552000 8428400 0 0 0 2690 1204 2760 7096;7097;7098 11079;11080;11081;11082 11080 4 EDSHPFDLGLYNEAVK TAKATILCTSYVQFKEDSHPFDLGLYNEAV DSHPFDLGLYNEAVKIIHDFPQFYPLGIVQ K E D V K I 1 0 1 2 0 0 2 1 1 0 2 1 0 1 1 1 0 0 1 1 0 0 16 0 1832.8581 B5MC59;A4D105;P35244 B5MC59 50 65 RPA3 Replication protein A 14 kDa subunit yes no 3 0.00011646 51.577 1 0.80342 0.85396 NaN 1 Median 0.80342 0.85396 NaN 1 0 Median NaN NaN NaN 0 0 Median 20599000 12298000 8300900 20599000 12298000 8300900 0 0 0 2691 661 2761 7099 11083;11084 11083 2 EDSLAQAGETINALK CQQNLDAASKRLREKEDSLAQAGETINALK EDSLAQAGETINALKGRISELQWSVMDQEM K E D L K G 3 0 1 1 0 1 2 1 0 1 2 1 0 0 0 1 1 0 0 0 0 0 15 0 1558.7839 A4D218;Q9Y6D9;C9JTA2;C9K086;C9JIR0 A4D218 149 163 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 2 0.010354 47.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2692 668 2762 7100 11085 11085 1 EDSLDSVLFLK QACEDHVQAQILPFREDSLDSVLFLKKINT LPFREDSLDSVLFLKKINTCWQDHCRQMIM R E D L K K 0 0 0 2 0 0 1 0 0 0 3 1 0 1 0 2 0 0 0 1 0 0 11 0 1264.6551 Q13619;A0A0A0MR50;B2RBV7;A0A087WWN2 Q13619 123 133 CUL4A Cullin-4A no no 2 7.3902E-08 113.62 2 2 0.79394 0.81105 14.776 4 Linear 0.74782 0.75744 18.671 2 0 Median 0.79394 0.63582 0.17254 2 0 Median 30158000 17267000 12891000 24243000 13997000 10246000 5914600 3269700 2644900 2693 1718 2763 7101;7102;7103;7104 11086;11087;11088;11089;11090;11091 11088 6 EDSQRPGAHLTVK KVDGRVVEPKRAVSREDSQRPGAHLTVKKI SREDSQRPGAHLTVKKIFVGGIKEDTEEHH R E D V K K 1 1 0 1 0 1 1 1 1 0 1 1 0 0 1 1 1 0 0 1 0 0 13 1 1436.7372 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q9BSM5;Q0VAC0;Q6IPF2;F8VZ49;A0A024RC46;A0A024QZ98;Q32P51;F8VYN5;B4DP35;F8W646 F8W6I7 93 105 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 2.4582E-06 115.18 4 1 2.1643 2.6136 31.983 5 Median 2.2696 2.6761 5.6697 4 0 Median 1.5066 1.3198 NaN 1 0 Median 395650000 119090000 276560000 393250000 118000000 275250000 2399600 1083900 1315700 2694 317 2764 7105;7106;7107;7108;7109 11092;11093;11094;11095;11096;11097;11098;11099;11100 11099 9 EDSVKPGAHLTVK KVDGRVVEPKRAVSREDSVKPGAHLTVKKI SREDSVKPGAHLTVKKIFVGGIKEDTEEYN R E D V K K 1 0 0 1 0 0 1 1 1 0 1 2 0 0 1 1 1 0 0 2 0 0 13 1 1379.7409 P51991;B4E3E6;B4DDB6;Q65ZQ3 P51991 114 126 HNRNPA3;HNRPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 yes no 2;3 0.0013069 47.987 2 1.5734 1.8345 NaN 1 Median 1.5734 1.8345 NaN 1 0 Median NaN NaN NaN 0 0 Median 44013000 3903600 40110000 44013000 3903600 40110000 0 0 0 2695 1598 2765 7110;7111 11101;11102 11101 2 EDTEEYNLR GAHLTVKKIFVGGIKEDTEEYNLRDYFEKY FVGGIKEDTEEYNLRDYFEKYGKIETIEVM K E D L R D 0 1 1 1 0 0 3 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1167.5044 P51991;B4E3E6;B4DDB6;Q65ZQ3 P51991 135 143 HNRNPA3;HNRPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 yes no 2 0.00045646 98.997 1 2 1.6045 0.732 48.431 3 Plateau 1.6218 1.6824 NaN 1 0 Median 0.83807 0.72719 0.93283 2 0 Median 32071000 13937000 18134000 22671000 9276100 13394000 9400100 4660800 4739300 2696 1598 2766 7112;7113;7114 11103;11104;11105;11106 11104 4 EDTFFYSLVYDPSLK ALLNETESVLSYLDKEDTFFYSLVYDPSLK EDTFFYSLVYDPSLKTLLADKGEIRVGPRY K E D L K T 0 0 0 2 0 0 1 0 0 0 2 1 0 2 1 2 1 0 2 1 0 0 15 0 1822.8665 E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8 E7EQY4 127 141 MTA3;tmp_locus_6 Metastasis-associated protein MTA3 yes no 2 2.3703E-07 107.85 2 0.71988 0.75373 NaN 1 Median 0.71988 0.75373 NaN 1 0 Median NaN NaN NaN 0 0 Median 15560000 11401000 4158900 15560000 11401000 4158900 0 0 0 2697 1221 2767 7115;7116 11107;11108;11109 11109 3 EDTLEFLIK YSILHHFRSIDPGLKEDTLEFLIKVVSRHS IDPGLKEDTLEFLIKVVSRHSQELPAILDD K E D I K V 0 0 0 1 0 0 2 0 0 1 2 1 0 1 0 0 1 0 0 0 0 0 9 0 1106.5859 B3KMS0;A0PJ76 B3KMS0 79 87 NCAPD2 Condensin complex subunit 1 yes no 2 0.00085417 93.429 2 2 1.205 1.1745 13.39 4 Median 0.91784 1.0506 0.13915 2 0 Median 1.5758 1.3243 1.3339 2 0 Median 450200000 211140000 239050000 348720000 175330000 173390000 101480000 35813000 65665000 2698 908 2768 7117;7118;7119;7120 11110;11111;11112;11113;11114;11115;11116;11117;11118;11119;11120;11121 11111 12 EDVATWQQSSLSLR RALGKNSELLVVSAREDVATWQQSSLSLRW REDVATWQQSSLSLRWASRLRAPTSTEANH R E D L R W 1 1 0 1 0 2 1 0 0 0 2 0 0 0 0 3 1 1 0 1 0 0 14 0 1618.7951 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 654 667 NOP14 Nucleolar protein 14 yes no 2 3.6498E-14 126.19 2 2 1.0835 1.0147 7.0219 4 Median 0.90634 0.95858 2.8386 2 0 Median 1.3102 1.0749 2.9544 2 0 Median 80725000 41147000 39579000 53934000 29232000 24702000 26791000 11915000 14876000 2699 790 2769 7121;7122;7123;7124 11122;11123;11124;11125;11126;11127;11128;11129;11130;11131 11124 10 EDVFVHQTAIK NVRNGYGFINRNDTKEDVFVHQTAIKKNNP NDTKEDVFVHQTAIKKNNPRKYLRSVGDGE K E D I K K 1 0 0 1 0 1 1 0 1 1 0 1 0 1 0 0 1 0 0 2 0 0 11 0 1285.6667 P67809;Q6PKI6;Q7KZ24;H0Y449;A0A0D9SEI8;Q59EB5;B2RCC2;Q9Y2T7;A0A024RAV4;A0A024RAQ1;P16989;Q96GD7 P67809 82 92 YBX1;YBX3;YBX2;CSDA Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 no no 2 6.2398E-17 157.75 1 2 2.3436 2.6463 NaN 1 Median 2.3436 2.6463 NaN 1 0 Median NaN NaN NaN 0 0 Median 131540000 42446000 89090000 128720000 39634000 89090000 2812100 2812100 0 2700 1657;310 2770 7125;7126;7127 11132;11133;11134 11132 3 EDVLEQR EARAFEEDQVAGRLKEDVLEQRGRLQKLVA DQVAGRLKEDVLEQRGRLQKLVAKEIQAPA K E D Q R G 0 1 0 1 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 887.43486 O43818 O43818 114 120 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.010107 125.08 1 1 0.79893 0.77234 3.8495 2 Median 0.71298 0.79365 NaN 1 0 Median 0.89524 0.7516 NaN 1 0 Median 83217000 48411000 34806000 78972000 46310000 32661000 4245500 2100200 2145300 2701 1389 2771 7128;7129 11135;11136;11137 11136 3 EDVLTLLLPVMGDSK GSIFGLGLAYAGSNREDVLTLLLPVMGDSK EDVLTLLLPVMGDSKSSMEVAGVTALACGM R E D S K S 0 0 0 2 0 0 1 1 0 0 4 1 1 0 1 1 1 0 0 2 0 0 15 0 1628.8695 Q59EG8;Q13200;B4DM22;Q9NSM5;Q13041 Q59EG8 500 514 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 7.4463E-12 115.29 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5655100 0 5655100 5655100 0 5655100 0 0 0 2702 1707 2772 7130;7131 11138;11139 11138 1537 2 EDVNEAIR STALARLRMVDVVEKEDVNEAIRLMEMSKD MVDVVEKEDVNEAIRLMEMSKDSLLGDKGQ K E D I R L 1 1 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 944.45632 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;Q9H4N9 B3KUD7 521 528 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.0065084 86.953 2 1.1844 1.1802 12.095 2 Median 1.1844 1.1802 12.095 2 0 Median NaN NaN NaN 0 0 Median 32800000 15647000 17153000 32800000 15647000 17153000 0 0 0 2703 560 2773 7132;7133 11140;11141 11140 2 EDYQFDELNTEILNNLADQELQLNHLK LQTQNSEIVKDDEGKEDYQFDELNTEILNN LNNLADQELQLNHLKNSITSYFGAAGRIAC K E D L K N 1 0 4 3 0 3 4 0 1 1 6 1 0 1 0 0 1 0 1 0 0 0 27 0 3258.5681 Q9Y483;Q96G26;B4DZG1 Q9Y483 523 549 MTF2 Metal-response element-binding transcription factor 2 yes no 3 0.00051078 28.665 1 0.88801 0.88771 NaN 1 Median 0.88801 0.88771 NaN 1 0 Median NaN NaN NaN 0 0 Median 14084000 7941600 6142400 14084000 7941600 6142400 0 0 0 2704 2143 2774 7134 11142;11143 11143 2 EEAAEHIPLLFFAFPSAK TDMDQAMERYVSMPREEAAEHIPLLFFAFP AEHIPLLFFAFPSAKDPTWEDRFPGRSTMI R E E A K D 4 0 0 0 0 0 3 0 1 1 2 1 0 3 2 1 0 0 0 0 0 0 18 0 2016.0357 H7C3J0;B4DKE1;Q6NUM9;I0EZ74;H7BZ81 H7C3J0 218 235 RETSAT All-trans-retinol 13,14-reductase yes no 3 0.009787 52.52 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2705 988 2775 7135 11144 11144 1 EEAEALYHSK AEVKAQYEEIAQRSKEEAEALYHSKYEELQ AQRSKEEAEALYHSKYEELQVTVGRHGDSL K E E S K Y 2 0 0 0 0 0 3 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1175.5459 CON__P35908;P35908 CON__P35908 371 380 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 1.587E-15 134.26 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 114190000 114190000 0 108740000 108740000 0 5449700 5449700 0 + 2706 1166 2776 7136;7137 11145;11146 11145 2 EEAEETNVLPK EEDDSLVDVYYREGKEEAEETNVLPKEKQT REGKEEAEETNVLPKEKQTKPAEAPRLQLS K E E P K E 1 0 1 0 0 0 4 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 11 0 1257.6089 Q14690;B4DH82 Q14690 1509 1519 PDCD11 Protein RRP5 homolog yes no 2 3.8977E-08 119.21 2 2 1.212 1.1053 6.7849 4 Median 1.0584 1.1774 5.9148 2 0 Median 1.3536 1.066 2.0959 2 0 Median 169280000 79169000 90114000 160920000 75385000 85533000 8365900 3784700 4581200 2707 1741 2777 7138;7139;7140;7141 11147;11148;11149;11150;11151;11152 11149 6 EEAENTLQSFR IMRLREKLQEEMLQREEAENTLQSFRQDVD MLQREEAENTLQSFRQDVDNASLARLDLER R E E F R Q 1 1 1 0 0 1 3 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1322.6103 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 197 207 HEL113;VIM Vimentin yes no 2 8.784E-66 219.7 1 2 3.6106 3.0328 39.797 3 Median 1.3372 1.5473 NaN 1 0 Median 3.6333 3.081 2.23 2 0 Median 316340000 127530000 188810000 271980000 118160000 153810000 44363000 9365500 34998000 2708 1457 2778 7142;7143;7144 11153;11154;11155;11156;11157;11158 11154 6 EEAETPAEATGKPQR QNSWKKRQVFKSLCREEAETPAEATGKPQR EEAETPAEATGKPQRDEAGPQRQLPALDGS R E E Q R D 3 1 0 0 0 1 4 1 0 0 0 1 0 0 2 0 2 0 0 0 0 0 15 1 1612.7693 Q8N9T8;A0A024R7C4;B4DUT2 Q8N9T8 593 607 KRI1;FLJ12949 Protein KRI1 homolog yes no 2;3 3.5659E-08 131.43 4 2 0.78107 0.86065 18.126 6 Median 0.71378 0.79946 10.178 4 0 Median 1.3103 1.0942 1.6125 2 0 Median 51658000 29834000 21824000 43139000 25880000 17259000 8518800 3954100 4564700 2709 1916 2779 7145;7146;7147;7148;7149;7150 11159;11160;11161;11162;11163;11164;11165;11166;11167;11168;11169 11160 11 EEAGAPGGGAGMAAGFPYALR LKAEPGFEPADCKRKEEAGAPGGGAGMAAG GGGAGMAAGFPYALRAYLGYQAVPSGSSGS K E E L R A 6 1 0 0 0 0 2 6 0 0 1 0 1 1 2 0 0 0 1 0 0 0 21 0 1948.9101 P17676 P17676 188 208 CEBPB CCAAT/enhancer-binding protein beta yes yes 2 6.1059E-08 65.295 1 1.2151 1.2151 NaN 1 Median 1.2151 1.2151 NaN 1 0 Median NaN NaN NaN 0 0 Median 16458000 7826800 8631400 16458000 7826800 8631400 0 0 0 2710 1493 2780 7151 11170;11171;11172 11172 1248 3 EEAGGEAAAAAAAER PPPPSELKKAEQQQREEAGGEAAAAAAAER EEAGGEAAAAAAAERGEMKAAAGQESEGPA R E E E R G 8 1 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 1372.6219 A0A0S2Q0B1;O14497 A0A0S2Q0B1 33 47 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.039485 38.799 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 461360 0 461360 0 0 0 461360 0 461360 2711 544 2781 7152 11173 11173 1 EEALEEADELDR REERHQEYLKMLAEREEALEEADELDRLVT AEREEALEEADELDRLVTAKTESVQYDHPN R E E D R L 2 1 0 2 0 0 5 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1417.6209 B4DGP7;V9GYY5;A0A024R1M6;Q9UGY1;B3KQ09 B4DGP7 76 87 MGC3731;NOL12 Nucleolar protein 12 yes no 2 6.809E-09 123.79 2 0.84316 0.85359 6.4429 2 Median 0.84316 0.85359 6.4429 2 0 Median NaN NaN NaN 0 0 Median 38450000 21650000 16801000 38450000 21650000 16801000 0 0 0 2712 80 2782 7153;7154 11174;11175;11176;11177;11178 11177 5 EEAPASPLRPLYPQISPLK PSTAIKIQFTSLYHKEEAPASPLRPLYPQI ASPLRPLYPQISPLKIHIPEPDLRSMVSPV K E E L K I 2 1 0 0 0 1 2 0 0 1 3 1 0 0 5 2 0 0 1 0 0 0 19 1 2105.1521 B4DY33;A4D1Z4;P85037;U3KQ26 B4DY33 91 109 KIAA0415;FOXK1 Forkhead box protein K1 yes no 3 0.011768 23.172 1 1.5833 1.7528 NaN 1 Median 1.5833 1.7528 NaN 1 0 Median NaN NaN NaN 0 0 Median 7832000 4695200 3136800 7832000 4695200 3136800 0 0 0 2713 667 2783 7155 11179 11179 1 EEAQALEDLTGFK TENLTGSKRRPQTPKEEAQALEDLTGFKEL PKEEAQALEDLTGFKELFQTPGHTEEAVAA K E E F K E 2 0 0 1 0 1 3 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 13 0 1449.6987 P46013 P46013 1338 1350 MKI67 Antigen KI-67 yes yes 2 3.0932E-19 147.91 3 2 2.4628 2.4672 21.244 4 Median 1.7612 2.07 1.9416 2 0 Median 3.4577 2.9828 3.9629 2 0 Median 1053600000 339540000 714030000 791920000 280740000 511180000 261640000 58792000 202850000 2714 1569 2784 7156;7157;7158;7159;7160 11180;11181;11182;11183;11184;11185;11186;11187;11188;11189;11190 11180 11 EEAQSLEDLAGFK AARVTGMKKWPRTPKEEAQSLEDLAGFKEL PKEEAQSLEDLAGFKELFQTPGPSEESMTD K E E F K E 2 0 0 1 0 1 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 13 0 1435.6831 P46013 P46013 1094 1106 MKI67 Antigen KI-67 yes no 2 1.2904E-18 166.97 3 2 2.4939 2.5291 18.756 4 Median 1.8137 2.1553 0.3728 2 0 Median 3.4008 2.982 1.053 2 0 Median 2291700000 744840000 1546900000 1673100000 603920000 1069100000 618640000 140920000 477720000 2715 1569 2785 7161;7162;7163;7164;7165 11191;11192;11193;11194;11195;11196;11197;11198;11199;11200;11201;11202;11203;11204 11197 14 EEASGSSVTAEEAKK FWEIVVQDGITLITKEEASGSSVTAEEAKK EEASGSSVTAEEAKKFLAPKDKPSGDTAAV K E E K K F 3 0 0 0 0 0 4 1 0 0 0 2 0 0 0 3 1 0 0 1 0 0 15 1 1521.7158 P13010;Q53T09 P13010 689 703 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.00023107 80.17 1 0.36313 0.40218 NaN 1 Median 0.36313 0.40218 NaN 1 0 Median NaN NaN NaN 0 0 Median 4261900 2752700 1509200 4261900 2752700 1509200 0 0 0 2716 1476 2786 7166 11205 11205 1 EEAWVIGSVVAR KEQTEQILRGIQQHKEEAWVIGSVVARAEG QHKEEAWVIGSVVARAEGSPRVKVKNLIES K E E A R A 2 1 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 1 0 3 0 0 12 0 1314.6932 Q3B7A7;Q59HH3;P22102;B4DJ93;A0A140TA71 Q3B7A7 758 769 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.0040376 65.719 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2717 1507 2787 7167 11206 11206 1 EEAYNSLMK TVKSVLELIPELNEKEEAYNSLMKSYVSEK PELNEKEEAYNSLMKSYVSEKDVTSAKALY K E E M K S 1 0 1 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 9 0 1083.4907 E5KNY5;P42704;H7C3W8 E5KNY5 1318 1326 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 1.0403E-05 106.36 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13299000 0 13299000 13299000 0 13299000 0 0 0 2718 1207 2788 7168;7169 11207;11208 11208 920 2 EEDESANSLRPGALFFSR SQKVTVTKLGQFRVKEEDESANSLRPGALF ESANSLRPGALFFSRINKTSPVTASDPAGP K E E S R I 2 2 1 1 0 0 3 1 0 0 2 0 0 2 1 3 0 0 0 0 0 0 18 1 2023.9599 F5H8D7;A0A024R0S8;Q59HH7;B4DTD3;P18887;B2RCY5;B4DEB2;M0QZ96;M0R0D2;M0R1U8;M0QYS5 F5H8D7 146 163 XRCC1 DNA repair protein XRCC1 yes no 3 0.031438 20.368 1 0.54287 0.4869 NaN 1 Median NaN NaN NaN 0 0 Median 0.54287 0.4869 NaN 1 0 Median 2368000 987680 1380300 0 0 0 2368000 987680 1380300 2719 58 2789 7170 11209 11209 1 EEDGSLSLDGADSTGVVAK EEWSCSLCHVLPDLKEEDGSLSLDGADSTG SLSLDGADSTGVVAKLSPANQRKCERVLLA K E E A K L 2 0 0 3 0 0 2 3 0 0 2 1 0 0 0 3 1 0 0 2 0 0 19 0 1848.8589 B2R8R5;Q13263;M0R0K9 B2R8R5 677 695 TRIM28 Transcription intermediary factor 1-beta yes no 2 7.3262E-06 77.078 2 1 1.7574 1.9554 27.608 3 Plateau 1.7151 1.8543 11.462 2 0 Median 1.4309 1.174 NaN 1 0 Median 83296000 34552000 48745000 78157000 32518000 45639000 5139600 2033800 3105800 2720 862 2790 7171;7172;7173 11210;11211;11212;11213 11212 4 EEDPATGTGDPPR GQRVYLHLRRTRRPKEEDPATGTGDPPRKK PKEEDPATGTGDPPRKKPTRLAIGVEGGFD K E E P R K 1 1 0 2 0 0 2 2 0 0 0 0 0 0 3 0 2 0 0 0 0 0 13 0 1340.5844 A0A140VJZ1;P45974;F5H571 A0A140VJZ1 81 93 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.040494 41.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2962400 0 2962400 2962400 0 2962400 0 0 0 2721 613 2791 7174 11214 11214 1 EEDPATGTGDPPRK GQRVYLHLRRTRRPKEEDPATGTGDPPRKK KEEDPATGTGDPPRKKPTRLAIGVEGGFDL K E E R K K 1 1 0 2 0 0 2 2 0 0 0 1 0 0 3 0 2 0 0 0 0 0 14 1 1468.6794 A0A140VJZ1;P45974;F5H571 A0A140VJZ1 81 94 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 3 0.017815 18.596 1 2.4643 2.8143 NaN 1 Median 2.4643 2.8143 NaN 1 0 Median NaN NaN NaN 0 0 Median 3248000 1074700 2173300 3248000 1074700 2173300 0 0 0 2722 613 2792 7175 11215 11215 1 EEDSSVIHYDNEAIAR GTEELFKDENEGENKEEDSSVIHYDNEAIA EDSSVIHYDNEAIARLLDRNQDATEDTDVQ K E E A R L 2 1 1 2 0 0 3 0 1 2 0 0 0 0 0 2 0 0 1 1 0 0 16 0 1846.8333 Q12873;B4DLC6 Q12873 1247 1262 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 3 4.6743E-05 64.507 1 0.61416 0.60535 NaN 1 Median 0.61416 0.60535 NaN 1 0 Median NaN NaN NaN 0 0 Median 14681000 7423100 7258200 14681000 7423100 7258200 0 0 0 2723 1701 2793 7176 11216 11216 1 EEDTSNTTFGPADLK LMAEMHVVLLKAVLREEDTSNTTFGPADLK EEDTSNTTFGPADLKDSVNSTLYFIDGMTW R E E L K D 1 0 1 2 0 0 2 1 0 0 1 1 0 1 1 1 3 0 0 0 0 0 15 0 1623.7264 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 158 172 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 2.6006E-05 86.911 2 1 0.7135 0.71664 46.809 3 Median 0.70819 0.70918 1.4815 2 0 Median 1.9179 1.5951 NaN 1 0 Median 48201000 26998000 21203000 45934000 26171000 19762000 2266900 826610 1440300 2724 1224 2794 7177;7178;7179 11217;11218;11219 11218 3 EEEAGGFIANLEPVSLADR GNNGFIWIYPTPEHKEEEAGGFIANLEPVS GGFIANLEPVSLADREVISRLRNCIISLVT K E E D R E 3 1 1 1 0 0 4 2 0 1 2 0 0 1 1 1 0 0 0 1 0 0 19 0 2015.98 Q13868;A3KFL5;A3KFL2;B3KQW2;A2VCR1 Q13868 213 231 EXOSC2 Exosome complex component RRP4 yes no 2 1.7747E-05 64.104 2 1 1.0175 1.1875 19.336 3 Plateau 1.0659 1.1359 14.816 2 0 Median 1.0175 0.8572 NaN 1 0 Median 61533000 30256000 31277000 56887000 27898000 28989000 4646200 2357600 2288500 2725 1722 2795 7180;7181;7182 11220;11221;11222;11223 11222 4 EEEEDTAEKPGKEEDVVTPK QPQRGEVSQKTVIIKEEEEDTAEKPGKEED TAEKPGKEEDVVTPKPGKRKRDQAEEEPNR K E E P K P 1 0 0 2 0 0 7 1 0 0 0 3 0 0 2 0 2 0 0 2 0 0 20 2 2258.0438 Q14676;B4DYH4 Q14676 1841 1860 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 0.006945 25.158 1 1.0718 1.2528 NaN 1 Median 1.0718 1.2528 NaN 1 0 Median NaN NaN NaN 0 0 Median 9834700 3977200 5857500 9834700 3977200 5857500 0 0 0 2726 1738 2796 7183 11224 11224 1 EEEEEAGESVEDIFSEVVGR PAPSRPALQEKQPEKEEEEEAGESVEDIFS AGESVEDIFSEVVGRKRQRSGPNRGAKRRR K E E G R K 1 1 0 1 0 0 8 2 0 1 0 0 0 1 0 2 0 0 0 3 0 0 20 0 2237.9812 Q8TDD1 Q8TDD1 636 655 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 1.4038E-23 133.16 2 0.91932 0.92383 0.31096 2 Median 0.91932 0.92383 0.31096 2 0 Median NaN NaN NaN 0 0 Median 31302000 16451000 14851000 31302000 16451000 14851000 0 0 0 2727 1933 2797 7184;7185 11225;11226;11227;11228;11229 11228 5 EEEEEEEEDQEGDRETTIR RLKPPAGWKADLLQREEEEEEEEDQEGDRE EEEEDQEGDRETTIRGKATPAEEEKTGKVK R E E I R G 0 2 0 2 0 1 10 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 19 1 2350.9521 Q15269;A0A0B4J2E5 Q15269 240 258 PWP2 Periodic tryptophan protein 2 homolog yes no 2;3 2.8992E-64 178.12 4 2 1.0992 1.0626 13.672 6 Median 0.93475 1.0528 17.43 4 0 Median 1.2558 1.1037 4.8058 2 0 Median 215680000 113550000 102130000 201110000 107140000 93970000 14569000 6404300 8164800 2728 1756 2798 7186;7187;7188;7189;7190;7191 11230;11231;11232;11233;11234;11235;11236;11237;11238;11239;11240;11241 11230 12 EEEEEEEEEQLNQTLAEMK DEEDSTAGTTKQPSKEEEEEEEEEQLNQTL EEEEEQLNQTLAEMKAQEVAELKRKKKKLL K E E M K A 1 0 1 0 0 2 10 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 19 0 2335.9849 Q8IY81;B4DKU3 Q8IY81 358 376 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 7.3946E-23 130.1 3 1.4461 1.4774 23.365 2 Median 1.4461 1.4774 23.365 2 0 Median NaN NaN NaN 0 0 Median 28786000 12703000 16082000 28786000 12703000 16082000 0 0 0 2729 1898 2799 7192;7193;7194 11242;11243;11244;11245 11242 1740 4 EEEEEPEGKPSDAESSESSDDEK KKKLRLLEQQELREKEEEEEPEGKPSDAES KPSDAESSESSDDEKAWVEEVRKQRRLLQQ K E E E K A 1 0 0 3 0 0 9 1 0 0 0 2 0 0 2 5 0 0 0 0 0 0 23 1 2537.9889 Q9BSC4;B4DS83 Q9BSC4 533 555 NOL10 Nucleolar protein 10 yes no 3 8.7365E-07 59.469 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3813100 0 3813100 3813100 0 3813100 0 0 0 2730 2000 2800 7195;7196 11246;11247 11247 2 EEEEEVFESSVPQR FQARVSRQTLLALEKEEEEEVFESSVPQRS KEEEEEVFESSVPQRSTLAELKSKGKKTAR K E E Q R S 0 1 0 0 0 1 6 0 0 0 0 0 0 1 1 2 0 0 0 2 0 0 14 0 1692.7479 O60566;H0YMK5 O60566 211 224 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 2 1.9001E-14 131.83 2 1 1.0279 1.0212 9.8498 3 Median 0.96222 0.96999 7.278 2 0 Median 1.2923 1.1219 NaN 1 0 Median 28809000 14057000 14752000 26446000 13187000 13259000 2362700 869630 1493100 2731 1396 2801 7197;7198;7199 11248;11249;11250;11251;11252;11253 11250 6 EEEELSSQMSSFNEAMTQIR EACSNGALIPGNLSKEEEELSSQMSSFNEA SSQMSSFNEAMTQIRELEEKAMEELKEIIQ K E E I R E 1 1 1 0 0 2 5 0 0 1 1 0 2 1 0 4 1 0 0 0 0 0 20 0 2345.0151 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1;H0Y5Z9 A8K3S3 623 642 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.0034978 48.704 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2732 626 2802 7200 11254 11254 481;482 1 EEEGTGVVHQAPYFGAEDYR KENGAFTVLVDNYVKEEEGTGVVHQAPYFG GVVHQAPYFGAEDYRVCMDFNIIRKDSLPV K E E Y R V 2 1 0 1 0 1 4 3 1 0 0 0 0 1 1 0 1 0 2 2 0 0 20 0 2252.9974 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4 Q59G75 332 351 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 3 4.4296E-11 89.859 2 2.4337 2.6597 NaN 1 Median 2.4337 2.6597 NaN 1 0 Median NaN NaN NaN 0 0 Median 53228000 12089000 41139000 53228000 12089000 41139000 0 0 0 2733 1561 2803 7201;7202 11255;11256 11255 2 EEEIAALVIDNGSGMCK ______________________________ EIAALVIDNGSGMCKAGFAGDDAPRAVFPS M E E C K A 2 0 1 1 1 0 3 2 0 2 1 1 1 0 0 1 0 0 0 1 0 0 17 0 1834.8441 P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P63261 2 18 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes no 2 2.4559E-45 168.98 1 2.7125 3.0309 NaN 1 Median 2.7125 3.0309 NaN 1 0 Median NaN NaN NaN 0 0 Median 92882000 25748000 67134000 92882000 25748000 67134000 0 0 0 2734 1656 2804 7203 11257 11257 1435 1 EEEIITLQQFLR DAAGKVLDRWAIMSREEEIITLQQFLRFGE MSREEEIITLQQFLRFGETKSIVELMAIQE R E E L R F 0 1 0 0 0 2 3 0 0 2 2 0 0 1 0 0 1 0 0 0 0 0 12 0 1517.809 B4E3J2;F5H586;Q5H9S4;H0Y6W5;D3DRJ1;B4DR27;B1APH0;Q6ZN30;Q06HB9;A0A1B0GX98;Q06HC2;Q06HC3;Q06HC1;Q06HC4 B4E3J2 65 76 BNC2;DKFZp686A01127;hCG_27250 Zinc finger protein basonuclin-2 yes no 2 0.00048051 88.495 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2163700 0 2163700 0 0 0 2163700 0 2163700 2735 819 2805 7204;7205 11258;11259 11259 2 EEEISELK LTKELNACREQLLEKEEEISELKAERNNTR REQLLEKEEEISELKAERNNTRLLLEHLEC K E E L K A 0 0 0 0 0 0 4 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 0 975.47606 F8VWR9;B7Z4H8;B1APN9;G3V200;Q4LE62;O75335;O75334 F8VWR9 103 110 PPFIA2;PPFIA4;PPFIA2 variant protein Liprin-alpha-4;Liprin-alpha-2 yes no 2 0.0019305 104.45 2 0.81413 0.87593 NaN 1 Median 0.81413 0.87593 NaN 1 0 Median NaN NaN NaN 0 0 Median 47622000 36326000 11295000 47622000 36326000 11295000 0 0 0 2736 821 2806 7206;7207 11260;11261 11260 2 EEELEETGNQHNDVEIEEAGEEEEK EEQKAEQEEGKVAQREEELEETGNQHNDVE HNDVEIEEAGEEEEKEIAIVHSDAEKEQEE R E E E K E 1 0 2 1 0 1 12 2 1 1 1 1 0 0 0 0 1 0 0 1 0 0 25 0 2914.2112 Q9H307;A8K964;B4DTD4;B4E392 Q9H307 316 340 PNN Pinin yes no 3 7.9521E-06 43.349 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12824000 0 12824000 12824000 0 12824000 0 0 0 2737 2028 2807 7208;7209;7210 11262;11263;11264 11263 3 EEELNAIR VEELLETGLIQVATKEEELNAIRTENSSLT LIQVATKEEELNAIRTENSSLTKEVQDLKA K E E I R T 1 1 1 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 972.48762 A0A024R663;Q86UP2;G3V4Y7;H0YJZ8 A0A024R663 762 769 KTN1 Kinectin yes no 2 0.041527 46.835 1 0.33184 0.28872 NaN 1 Median NaN NaN NaN 0 0 Median 0.33184 0.28872 NaN 1 0 Median 1253100 762820 490290 0 0 0 1253100 762820 490290 2738 197 2808 7211 11265 11265 1 EEEMGEEEEVER NEYLSSFKVAQYVVREEEMGEEEEVEREII VVREEEMGEEEEVEREIIKQEESVDPDYWE R E E E R E 0 1 0 0 0 0 8 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 12 0 1493.5828 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1282 1293 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 1.7779E-29 164.97 1 0.88929 0.93257 NaN 1 Median 0.88929 0.93257 NaN 1 0 Median NaN NaN NaN 0 0 Median 39334000 20363000 18970000 39334000 20363000 18970000 0 0 0 2739 515 2809 7212 11266;11267 11266 368 2 EEENVGIDITEPLYMQR NFQRFLQRFIDPLAKEEENVGIDITEPLYM ENVGIDITEPLYMQRLGEINVIGEPFLNVN K E E Q R L 0 1 1 1 0 1 4 1 0 2 1 0 1 0 1 0 1 0 1 1 0 0 17 0 2034.9568 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RFJ8 B4DLA6 140 156 MCM4 DNA replication licensing factor MCM4 yes no 2 0.0038667 46.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2740 235 2810 7213 11268 11268 175 1 EEESQQQAVLEQERR KRIQAEVEAQLARQKEEESQQQAVLEQERR EEESQQQAVLEQERRDRELALRIAQSEAEL K E E R R D 1 2 0 0 0 4 5 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 15 1 1857.8817 A0A0A0MRM8;A0A0D9SGC1;E7EW20;Q9UM54;Q5JVM0 A0A0A0MRM8 994 1008 MYO6 Unconventional myosin-VI yes no 3 0.03555 35.037 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2741 467 2811 7214 11269 11269 1 EEETEAAIGAPPTATEGPETK GTPGAPPLAGMAIVKEEETEAAIGAPPTAT AIGAPPTATEGPETKPVLMALAEGPGAEGP K E E T K P 4 0 0 0 0 0 6 2 0 1 0 1 0 0 3 0 4 0 0 0 0 0 21 0 2126.9855 B2R8R5;Q13263;M0R0K9 B2R8R5 555 575 TRIM28 Transcription intermediary factor 1-beta yes no 2 6.939E-29 132.31 2 1.596 1.5977 2.2355 2 Median 1.596 1.5977 2.2355 2 0 Median NaN NaN NaN 0 0 Median 38179000 15062000 23117000 38179000 15062000 23117000 0 0 0 2742 862 2812 7215;7216 11270;11271;11272;11273;11274 11271 5 EEETLDTIK AQKVVPDPNVIKLKREEETLDTIKQYYVLC VIKLKREEETLDTIKQYYVLCSSRDEKFQA R E E I K Q 0 0 0 1 0 0 3 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 9 0 1076.5237 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;Q59FQ9;Q68DY7;B4DL69;Q69YM2;A0A024QZ90;I3L352;B4DS24;Q9HBZ9;Q7Z4W5 I3L0H8 268 276 DDX19A;DDX19B;DKFZp686C21137;hCG_1998531;DKFZp762C1313 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 0.025193 47.96 1 2.268 2.4475 NaN 1 Median 2.268 2.4475 NaN 1 0 Median NaN NaN NaN 0 0 Median 21816000 7765800 14050000 21816000 7765800 14050000 0 0 0 2743 593 2813 7217 11275 11275 1 EEEVTGPVIAPLFPQK IRSGGPVVVLVQLEREEEVTGPVIAPLFPQ EEVTGPVIAPLFPQKREEGWWVVIGDAKSN R E E Q K R 1 0 0 0 0 1 3 1 0 1 1 1 0 1 3 0 1 0 0 2 0 0 16 0 1752.9298 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 2044 2059 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 2.16E-06 97.456 2 2 0.97782 0.88241 18.785 4 Median 0.99688 1.0508 3.8994 2 0 Median 0.96992 0.76073 0.18489 2 0 Median 73640000 38949000 34691000 66025000 34808000 31217000 7615500 4141700 3473700 2744 1411 2814 7218;7219;7220;7221 11276;11277;11278;11279;11280;11281 11277 6 EEEWDPEYTPK NNNNNSNNDFQKRNREEEWDPEYTPKSKKY KRNREEEWDPEYTPKSKKYYLHDDREGEGS R E E P K S 0 0 0 1 0 0 4 0 0 0 0 1 0 0 2 0 1 1 1 0 0 0 11 0 1421.5987 Q9NYF8;B0AZU3;H0YF14;Q9Y2W1 Q9Y2W1 866 876 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 no no 2 0.0080049 61.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4422300 4422300 0 4422300 4422300 0 0 0 0 2745 2128;2083 2815 7222 11282 11282 1 EEFQHAMGGVPAWAETTK SESKLSKDNLKKRLKEEFQHAMGGVPAWAE QHAMGGVPAWAETTKRKTSSDDESEEDEDD K E E T K R 3 0 0 0 0 1 3 2 1 0 0 1 1 1 1 0 2 1 0 1 0 0 18 0 1987.9098 B2RAX6;Q9Y5J1 B2RAX6 160 177 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 1.904E-05 50.392 1 1.0104 1.0265 NaN 1 Median 1.0104 1.0265 NaN 1 0 Median NaN NaN NaN 0 0 Median 30046000 15270000 14776000 30046000 15270000 14776000 0 0 0 2746 876 2816 7223 11283 11283 682 1 EEFVEDAAALK AVEGLAYLTFDADVKEEFVEDAAALKALFQ ADVKEEFVEDAAALKALFQLSRLEERSVLF K E E L K A 3 0 0 1 0 0 3 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 11 0 1220.5925 Q9H3U1 Q9H3U1 562 572 UNC45A Protein unc-45 homolog A yes yes 2 0.010548 58.433 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4171000 0 4171000 4171000 0 4171000 0 0 0 2747 2029 2817 7224 11284 11284 1 EEGDEEGEGDEAEDEEQRGPELK QNAAKASRKKLKRVREEGDEEGEGDEAEDE GDEAEDEEQRGPELKQASRRDMYTICQSAG R E E L K Q 1 1 0 3 0 1 10 4 0 0 1 1 0 0 1 0 0 0 0 0 0 0 23 1 2575.0318 Q7KZ85 Q7KZ85 494 516 SUPT6H Transcription elongation factor SPT6 yes yes 3 4.1153E-08 56.882 1 1.3493 1.5046 NaN 1 Median 1.3493 1.5046 NaN 1 0 Median NaN NaN NaN 0 0 Median 11212000 5128100 6084000 11212000 5128100 6084000 0 0 0 2748 1870 2818 7225 11285;11286 11286 2 EEGDLGPVYGFQWR NGSRDFLDSLGFSTREEGDLGPVYGFQWRH REEGDLGPVYGFQWRHFGAEYRDMESDYSG R E E W R H 0 1 0 1 0 1 2 3 0 0 1 0 0 1 1 0 0 1 1 1 0 0 14 0 1651.7631 Q53Y97;Q53FB7;A8K9A5;P04818 Q53Y97 127 140 TYMS Thymidylate synthase yes no 2 0.023838 42.718 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4722000 0 4722000 4722000 0 4722000 0 0 0 2749 782 2819 7226 11287 11287 1 EEGETADTVGCCSLR LYFIDKLALRAGNEKEEGETADTVGCCSLR EEGETADTVGCCSLRVEHINLHPELDGQEY K E E L R V 1 1 0 1 2 0 3 2 0 0 1 0 0 0 0 1 2 0 0 1 0 0 15 0 1682.6876 P11387;B9EG90 P11387 494 508 TOP1 DNA topoisomerase 1 yes no 2 1.7986E-47 181.49 3 2 1.1842 1.2002 10.178 4 Median 0.94235 1.1052 5.8548 2 0 Median 1.4877 1.2952 4.9714 2 0 Median 1130700000 529320000 601370000 728000000 365330000 362680000 402690000 163990000 238690000 2750 1470 2820 7227;7228;7229;7230;7231 11288;11289;11290;11291;11292;11293;11294;11295;11296;11297;11298;11299;11300;11301 11299 14 EEGIENFDVYAIK KSFTGNFVIDENILKEEGIENFDVYAIKPG LKEEGIENFDVYAIKPGHPLQPDFFLDEYP K E E I K P 1 0 1 1 0 0 3 1 0 2 0 1 0 1 0 0 0 0 1 1 0 0 13 0 1525.73 B2R923;A0A024R159;Q6YN16;B4DWC7;B4E136 B2R923 178 190 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 1.5897E-05 99.568 2 2.2526 2.263 NaN 1 Median 2.2526 2.263 NaN 1 0 Median NaN NaN NaN 0 0 Median 21697000 5807500 15890000 21697000 5807500 15890000 0 0 0 2751 70 2821 7232;7233 11302;11303 11303 2 EEGNLEAVLNALDK AQLQTSIREEISDIKEEGNLEAVLNALDKI KEEGNLEAVLNALDKIVEEGKVRKEPAWRP K E E D K I 2 0 2 1 0 0 3 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 14 0 1513.7624 U3KQ54;Q6P1K2;D3DVB3 U3KQ54 97 110 PMF1-BGLAP;PMF1;hCG_1999356 Polyamine-modulated factor 1 yes no 2 3.9792E-06 100.93 2 1 0.80721 0.82306 18.877 3 Median 0.77117 0.79553 4.8106 2 0 Median 1.3393 1.0973 NaN 1 0 Median 26465000 13922000 12543000 23943000 12833000 11110000 2521900 1089000 1432800 2752 1852 2822 7234;7235;7236 11304;11305;11306;11307;11308 11304 5 EEGTPLTLYYSHWR VSEQQAVEAWEKLTREEGTPLTLYYSHWRK REEGTPLTLYYSHWRKLRDREIQLEISGKE R E E W R K 0 1 0 0 0 0 2 1 1 0 2 0 0 0 1 1 2 1 2 0 0 0 14 0 1750.8315 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7 Q9Y3T9 610 623 NOC2L Nucleolar complex protein 2 homolog yes no 2;3 0.00047063 61.167 3 2 0.9702 0.89908 3.676 4 Median 0.86297 0.90989 5.1735 2 0 Median 1.0392 0.89892 3.5077 2 0 Median 54865000 24901000 29964000 45865000 20057000 25808000 9000100 4844200 4155900 2753 2139 2823 7237;7238;7239;7240;7241 11309;11310;11311;11312;11313 11311 4 EEIAQLAR VVWLWLGTQSFVFQREEIAQLARQYAGLDH QSFVFQREEIAQLARQYAGLDHELAFSRLI R E E A R Q 2 1 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 928.49779 B4DR71;A2A3U5;Q99720 B4DR71 40 47 hCG_20471;SIGMAR1 Sigma non-opioid intracellular receptor 1 yes no 2 0.0033502 97.068 2 0.69134 0.7108 NaN 1 Median 0.69134 0.7108 NaN 1 0 Median NaN NaN NaN 0 0 Median 36455000 23322000 13133000 36455000 23322000 13133000 0 0 0 2754 650 2824 7242;7243 11314;11315;11316 11314 3 EEIDPDEEESAK SGPNTQNEDIEKEVKEEIDPDEEESAKKKH EVKEEIDPDEEESAKKKHLDKKRKLKEMFD K E E A K K 1 0 0 2 0 0 5 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 12 0 1389.5783 Q14692 Q14692 811 822 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 8.0644E-18 142 2 2 0.95933 1.0727 4.2688 3 Median 0.95786 1.077 0.56378 2 0 Median 1.2563 1.0006 NaN 1 0 Median 202150000 104780000 97372000 192460000 99633000 92832000 9687700 5147400 4540200 2755 1742 2825 7244;7245;7246;7247 11317;11318;11319;11320;11321;11322 11320 6 EEIDPDEEESAKK SGPNTQNEDIEKEVKEEIDPDEEESAKKKH VKEEIDPDEEESAKKKHLDKKRKLKEMFDA K E E K K K 1 0 0 2 0 0 5 0 0 1 0 2 0 0 1 1 0 0 0 0 0 0 13 1 1517.6733 Q14692 Q14692 811 823 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.031247 20.733 1 0.69566 0.77362 NaN 1 Median 0.69566 0.77362 NaN 1 0 Median NaN NaN NaN 0 0 Median 5715300 3109600 2605700 5715300 3109600 2605700 0 0 0 2756 1742 2826 7248 11323 11323 0 EEIGNVQLEK EKTVQDLKQEIKALKEEIGNVQLEKAQQLS IKALKEEIGNVQLEKAQQLSITSKVQELQN K E E E K A 0 0 1 0 0 1 3 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1157.5928 A0A024R663;Q86UP2;G3V4Y7;H0YJZ8;G3V5G2 A0A024R663 843 852 KTN1 Kinectin yes no 2 0.012291 50.834 2 0.50587 0.43051 4.0593 2 Median NaN NaN NaN 0 0 Median 0.50587 0.43051 4.0593 2 0 Median 3331100 1991100 1340000 0 0 0 3331100 1991100 1340000 2757 197 2827 7249;7250 11324;11325 11324 2 EEIIEAFVQELR QELLEEVKKELQKVKEEIIEAFVQELRKRG KVKEEIIEAFVQELRKRGSP__________ K E E L R K 1 1 0 0 0 1 4 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 12 0 1474.7668 A0A0S2Z4I7;A0A0S2Z4I9;A0A0S2Z4N8;A0A024R0V4;P50552 A0A0S2Z4I7 272 283 VASP Vasodilator-stimulated phosphoprotein yes no 2 0.00099151 83 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1863900 0 1863900 1863900 0 1863900 0 0 0 2758 59 2828 7251 11326 11326 1 EEILAQAK MKDCMRELDDTRASREEILAQAKENEKKLK DDTRASREEILAQAKENEKKLKSMEAEMIQ R E E A K E 2 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 900.49165 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1662 1669 MYH9;FLJ00279 Myosin-9 yes no 2 0.0015211 108.24 3 1.9217 2.1428 NaN 1 Median 1.9217 2.1428 NaN 1 0 Median NaN NaN NaN 0 0 Median 81110000 17998000 63112000 81110000 17998000 63112000 0 0 0 2759 81 2829 7252;7253;7254 11327;11328;11329;11330 11330 4 EEINDIK LSASKMLSKFRKIIKEEINDIKDTDVIMKR SKFRKIIKEEINDIKDTDVIMKRKRGGSPA K E E I K D 0 0 1 1 0 0 2 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 7 0 859.42871 Q8N884 Q8N884 286 292 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.037624 60.76 1 1.5382 1.5065 NaN 1 Median 1.5382 1.5065 NaN 1 0 Median NaN NaN NaN 0 0 Median 22166000 8805100 13361000 22166000 8805100 13361000 0 0 0 2760 1914 2830 7255 11331 11331 1 EEIQENEEAVK QNKRTPDLPEEEYVKEEIQENEEAVKKMLV EYVKEEIQENEEAVKKMLVEATREFEEVVV K E E V K K 1 0 1 0 0 1 5 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 11 0 1316.6096 Q9NYB0 Q9NYB0 241 251 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 2 0.0015136 82.749 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1924000 0 1924000 1924000 0 1924000 0 0 0 2761 2082 2831 7256 11332 11332 1 EEIQETQTPTHSR KDDEIVFKQPISCVKEEIQETQTPTHSRKK VKEEIQETQTPTHSRKKRRRSSNQ______ K E E S R K 0 1 0 0 0 2 3 0 1 1 0 0 0 0 1 1 3 0 0 0 0 0 13 0 1554.7274 Q9BYG3;H7BZL0 Q9BYG3 272 284 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2;3 2.3587E-238 318.83 4 4 1.1652 1.1384 7.5318 8 Median 1.0464 1.2249 3.7926 4 0 Median 1.237 1.0662 2.689 4 0 Median 892960000 431450000 461510000 746220000 364970000 381250000 146740000 66476000 80266000 2762 2019 2832 7257;7258;7259;7260;7261;7262;7263;7264 11333;11334;11335;11336;11337;11338;11339;11340;11341;11342;11343;11344;11345;11346;11347 11337 15 EEIQSSISGVTAAYNR DEPPNFVQNSMQLSREEIQSSISGVTAAYN EIQSSISGVTAAYNREQLWLANEGLITRLQ R E E N R E 2 1 1 0 0 1 2 1 0 2 0 0 0 0 0 3 1 0 1 1 0 0 16 0 1723.8377 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;H0YLE8;B4E2M0;Q6P1N4;A0A087WWP1 A4QPB0 723 738 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 2.0345E-17 128.36 2 2 1.1711 1.1227 38.85 4 Median 1.4839 1.4894 1.7423 2 0 Median 0.87281 0.77246 14.651 2 0 Median 31674000 14011000 17663000 27375000 11769000 15606000 4299600 2242500 2057100 2763 352 2833 7265;7266;7267;7268 11348;11349;11350;11351;11352;11353;11354 11348 7 EEISATQIIVCTPEK GITVAELTGDHQLCKEEISATQIIVCTPEK EEISATQIIVCTPEKWDIITRKGGERTYTQ K E E E K W 1 0 0 0 1 1 3 0 0 3 0 1 0 0 1 1 2 0 0 1 0 0 15 0 1716.8604 O75643;A4FU77;Q9H8B9 O75643 578 592 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 4.4612E-15 127.56 2 2 0.84534 0.80178 16.19 4 Median 0.84534 0.88385 4.551 2 0 Median 0.86724 0.68929 12.147 2 0 Median 35796000 19307000 16489000 27562000 14831000 12731000 8233400 4475600 3757800 2764 1411 2834 7269;7270;7271;7272 11355;11356;11357;11358;11359;11360;11361;11362 11357 8 EELAQFHR LYYGCRRSDEDYLYREELAQFHRDGALTQL DEDYLYREELAQFHRDGALTQLNVAFSREQ R E E H R D 1 1 0 0 0 1 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1028.5039 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;E7EMD0;B4DDH3;B4DKM8;B4E305 B2R6E5 580 587 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.0022282 101.69 1 2.1051 2.1726 NaN 1 Median 2.1051 2.1726 NaN 1 0 Median NaN NaN NaN 0 0 Median 24055000 7737700 16318000 24055000 7737700 16318000 0 0 0 2765 719 2835 7273 11363 11363 1 EELAYLK TLARADLEMQIESLKEELAYLKKNHEEEMN EMQIESLKEELAYLKKNHEEEMNALRGQVG K E E L K K 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 864.45928 CON__P02533;P02533;A0A024R1X6;K7ELP7;CON__Q04695;Q04695;F5GWP8;Q14666;K7EPJ9;K7ESE1;B4DE59;K7EMS3 CON__P02533 244 250 KRT14;KRT17;KRT19 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 0.026804 79.454 1 1 0.064526 0.062659 75.273 2 Median 0.031933 0.036798 NaN 1 0 Median 0.13039 0.10669 NaN 1 0 Median 190260000 181140000 9113800 181820000 173730000 8088100 8437000 7411200 1025700 + 2766 1150;1168;964 2836 7274;7275 11364;11365 11364 2 EELDFQK MLRRVDAENRLQTMKEELDFQKNIYSEELR ENRLQTMKEELDFQKNIYSEELRETKRRHE K E E Q K N 0 0 0 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 907.42871 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 202 208 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.028486 71.852 2 1 1.2405 1.4133 8.8408 3 Plateau 1.2129 1.4066 3.9756 2 0 Median 1.4951 1.2166 NaN 1 0 Median 483870000 220530000 263330000 476710000 217520000 259190000 7154500 3013400 4141000 2767 1440 2837 7276;7277;7278 11366;11367;11368 11366 3 EELEALFLPYDLK QNRNMGKPAQPALSREELEALFLPYDLKRL SREELEALFLPYDLKRLEMYSRNMVDYHLI R E E L K R 1 0 0 1 0 0 3 0 0 0 4 1 0 1 1 0 0 0 1 0 0 0 13 0 1578.8181 Q9H0A0;A0A087WV29 Q9H0A0 811 823 NAT10 N-acetyltransferase 10 yes no 2 4.485E-49 195.51 2 0.94101 1.0825 0.15922 2 Median 0.94101 1.0825 0.15922 2 0 Median NaN NaN NaN 0 0 Median 387730000 194760000 192970000 387730000 194760000 192970000 0 0 0 2768 2023 2838 7279;7280 11369;11370;11371;11372 11370 4 EELEEMLVEK KTVTRDVIGSRWLIKEELEEMLVEKLSDLD RWLIKEELEEMLVEKLSDLDYMQFIRLLEK K E E E K L 0 0 0 0 0 0 5 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 10 0 1247.5955 Q86WV4;P82933;H7BZC4 Q86WV4 109 118 MRPS9 28S ribosomal protein S9, mitochondrial yes no 2 1.1073E-05 92.838 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8311200 0 8311200 8311200 0 8311200 0 0 0 2769 1670 2839 7281;7282 11373;11374 11373 1472 2 EELEEVIK LATVQPGQNFHMFTKEELEEVIKDI_____ NFHMFTKEELEEVIKDI_____________ K E E I K D 0 0 0 0 0 0 4 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 987.51244 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 232 239 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 2 0.057469 41.025 1 1.9794 1.5526 NaN 1 Median NaN NaN NaN 0 0 Median 1.9794 1.5526 NaN 1 0 Median 2063500 650550 1413000 0 0 0 2063500 650550 1413000 2770 595 2840 7283 11375 11375 1 EELEFEVPFR TAFKNFIEKVEALTKEELEFEVPFRDLGFN EALTKEELEFEVPFRDLGFNGAPYRSTCLL K E E F R D 0 1 0 0 0 0 4 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 10 0 1293.6241 Q9Y5B9 Q9Y5B9 793 802 SUPT16H FACT complex subunit SPT16 yes yes 2 2.8483E-09 125.82 2 2 0.69065 0.80697 20.754 3 Median 0.69079 0.81271 1.0022 2 0 Median 0.64006 0.56743 NaN 1 0 Median 1020100000 599010000 421140000 1018800000 598190000 420640000 1322800 820880 501870 2771 2148 2841 7284;7285;7286;7287 11376;11377;11378;11379;11380;11381;11382 11377 7 EELEQASQAHGAR ITDLQSSISNLSQAKEELEQASQAHGARLT AKEELEQASQAHGARLTAQVASLTSELTTL K E E A R L 3 1 0 0 0 2 3 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1424.6644 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 483 495 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 4.457E-89 233.54 4 4 1.1692 1.1186 14.028 8 Median 0.95434 0.97586 15.665 4 0 Median 1.3961 1.1753 5.621 4 0 Median 166450000 87378000 79076000 133540000 73199000 60337000 32919000 14180000 18739000 2772 186;1747;718 2842 7288;7289;7290;7291;7292;7293;7294;7295 11383;11384;11385;11386;11387;11388;11389;11390;11391;11392;11393;11394;11395;11396;11397;11398;11399 11389 17 EELEQTYHAK HEMREQHDAQVRLYKEELEQTYHAKLENAR VRLYKEELEQTYHAKLENARLSSEMNTSTV K E E A K L 1 0 0 0 0 1 3 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 10 0 1246.583 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 262 271 LMNB1 Lamin-B1 yes no 2;3 1.9962E-10 137.14 1 1 1.0954 1.0083 23.193 2 Median 1.1378 1.188 NaN 1 0 Median 1.0547 0.85576 NaN 1 0 Median 37531000 19390000 18141000 24341000 12431000 11910000 13190000 6958700 6231300 2773 1502 2843 7296;7297 11400;11401;11402 11401 3 EELFIEQK VRRDKTLLKEKRKRREELFIEQKKRKLLPD KEKRKRREELFIEQKKRKLLPDTILEKLTT R E E Q K K 0 0 0 0 0 1 3 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 1034.5284 A0A024QZW2;Q9UMY1;H7C2B1 A0A024QZW2 102 109 NOL7 Nucleolar protein 7 yes no 2 0.0080127 80.462 1 1.0712 1.1069 NaN 1 Median 1.0712 1.1069 NaN 1 0 Median NaN NaN NaN 0 0 Median 11425000 6137600 5286900 11425000 6137600 5286900 0 0 0 2774 30 2844 7298 11403 11403 1 EELGFRPEYSASQLK MIDRWYHPGCFVKNREELGFRPEYSASQLK EELGFRPEYSASQLKGFSLLATEDKEALKK R E E L K G 1 1 0 0 0 1 3 1 0 0 2 1 0 1 1 2 0 0 1 0 0 0 15 1 1752.8683 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0 A0A024R3T8 168 182 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 0.0001014 63.128 2 1 0.71795 0.84486 12.724 3 Median 0.66559 0.78954 9.5775 2 0 Median 1.1352 0.95148 NaN 1 0 Median 139820000 79209000 60608000 133680000 76160000 57517000 6139100 3048300 3090800 2775 139 2845 7299;7300;7301 11404;11405;11406 11405 3 EELGLIEQAYDNPHEALSR KEAYSVKSRLNQSQREELGLIEQAYDNPHE LIEQAYDNPHEALSRIKRHLLTQRAFKEVG R E E S R I 2 1 1 1 0 1 4 1 1 1 3 0 0 0 1 1 0 0 1 0 0 0 19 0 2183.0495 Q6P2Q9;I3L0J9 Q6P2Q9 862 880 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 5.9631E-13 109.89 4 1 0.78966 0.89146 10.539 2 Median 0.78966 0.89146 10.539 2 0 Median NaN NaN NaN 0 0 Median 146770000 80868000 65906000 143020000 80868000 62152000 3754100 0 3754100 2776 1854 2846 7302;7303;7304;7305;7306 11407;11408;11409;11410;11411;11412 11408 6 EELGRPATLLWLIQK DEKAESDGEEKEEVKEELGRPATLLWLIQK EELGRPATLLWLIQKLSRIAKLEAAYSPRN K E E Q K L 1 1 0 0 0 1 2 1 0 1 4 1 0 0 1 0 1 1 0 0 0 0 15 1 1766.0091 O75691;B4DN27 O75691 2611 2625 UTP20 Small subunit processome component 20 homolog yes no 3 0.00036057 50.155 2 2 1.3615 1.3318 12.536 4 Median 1.1796 1.3017 8.7668 2 0 Median 1.733 1.4438 16.953 2 0 Median 40175000 19138000 21038000 31740000 16058000 15682000 8435200 3080000 5355200 2777 1412 2847 7307;7308;7309;7310 11413;11414;11415;11416;11417;11418 11413 6 EELIAELQDCEGLIVR QDGGLQVVEKQNLSKEELIAELQDCEGLIV ELIAELQDCEGLIVRSATKVTADVINAAEK K E E V R S 1 1 0 1 1 1 4 1 0 2 3 0 0 0 0 0 0 0 0 1 0 0 16 0 1885.9455 O43175;V9HW79 O43175 39 54 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 2.6627E-05 85.554 2 1.525 1.2678 10.878 2 Median NaN NaN NaN 0 0 Median 1.525 1.2678 10.878 2 0 Median 15266000 5688900 9577600 0 0 0 15266000 5688900 9577600 2778 1382 2848 7311;7312 11419;11420;11421;11422;11423;11424 11419 6 EELLAEFGSGTLDLPALTR VWDVLASGYVSRAAREELLAEFGSGTLDLP AEFGSGTLDLPALTRRLTAIIEEAEEAPGA R E E T R R 2 1 0 1 0 0 3 2 0 0 5 0 0 1 1 1 2 0 0 0 0 0 19 0 2031.0524 A0A075B730;A0A087X1U6;P58107 A0A075B730 2526 2544 EPPK1 Epiplakin no no 2 2.9179E-51 171.76 2 2.1926 2.4667 2.7495 2 Median 2.1926 2.4667 2.7495 2 0 Median NaN NaN NaN 0 0 Median 187310000 57680000 129630000 187310000 57680000 129630000 0 0 0 2779 397;1622 2849 7313;7314 11425;11426;11427;11428;11429 11426 5 EELLAVGK TKQQLKASLGKVGVKEELLAVGKFTRTSGE LGKVGVKEELLAVGKFTRTSGETTHTHREP K E E G K F 1 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 857.48583 P46013 P46013 1036 1043 MKI67 Antigen KI-67 yes no 2 0.0077064 81.784 2 2 2.3123 2.3483 16.726 4 Median 1.7001 2.0359 1.2189 2 0 Median 3.1482 2.718 1.7148 2 0 Median 4141500000 1599500000 2542000000 3867100000 1534700000 2332400000 274420000 64772000 209650000 2780 1569 2850 7315;7316;7317;7318 11430;11431;11432;11433;11434;11435;11436;11437;11438 11435 9 EELLEYEEK YIMQLPVPMDAALNKEELLEYEEKKRQAEE DAALNKEELLEYEEKKRQAEEEKMALPELV K E E E K K 0 0 0 0 0 0 5 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 9 0 1180.5499 A0A140VJZ1;P45974 A0A140VJZ1 500 508 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 3.0873E-07 120.15 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10984000 0 10984000 10984000 0 10984000 0 0 0 2781 613 2851 7319 11439 11439 1 EELLFMK NITRLQLETEIEALKEELLFMKKNHEEEVK ETEIEALKEELLFMKKNHEEEVKGLQAQIA K E E M K K 0 0 0 0 0 0 2 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 7 0 908.46774 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__H-INV:HIT000015463;CON__P05784 F8VZY9 208 214 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.013005 80.555 4 1.1242 1.1997 35.481 4 Median 1.1242 1.1997 35.481 4 0 Median NaN NaN NaN 0 0 Median 387400000 165360000 222040000 387400000 165360000 222040000 0 0 0 + 2782 316;1155 2852;2853 7320;7321;7322;7323 11440;11441;11442;11443;11444;11445 11440 234 6 EELLFMKK NITRLQLETEIEALKEELLFMKKNHEEEVK TEIEALKEELLFMKKNHEEEVKGLQAQIAS K E E K K N 0 0 0 0 0 0 2 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 8 1 1036.5627 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 208 215 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.017781 81.784 2 1.2232 1.4298 9.1773 2 Median 1.2232 1.4298 9.1773 2 0 Median NaN NaN NaN 0 0 Median 95700000 40486000 55213000 95700000 40486000 55213000 0 0 0 + 2783 316;1155 2854 7324;7325 11446;11447 11446 234 2 EELLHSEK VTKQAIREARLKEIKEELLHSEKLKTYFED ARLKEIKEELLHSEKLKTYFEDNPRDLQLL K E E E K L 0 0 0 0 0 0 3 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 983.49238 Q9NY93;Q53HB9;H7BZN7 Q9NY93 452 459 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 1.2949E-09 161.9 2 1 0.92015 0.98895 6.7874 3 Median 0.9047 0.97081 9.479 2 0 Median 1.2626 0.98895 NaN 1 0 Median 121100000 60561000 60538000 109500000 55332000 54164000 11603000 5229200 6373400 2784 2081 2855 7326;7327;7328 11448;11449;11450;11451;11452;11453 11448 6 EELLQVVEAMK DDDIENEADISMYGKEELLQVVEAMKTLLL MYGKEELLQVVEAMKTLLLKERQEKLQLEM K E E M K T 1 0 0 0 0 1 3 0 0 0 2 1 1 0 0 0 0 0 0 2 0 0 11 0 1287.6744 O95235 O95235 561 571 KIF20A Kinesin-like protein KIF20A yes yes 2 8.9266E-07 105.2 1 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 787170 787170 0 0 0 0 787170 787170 0 2785 1421 2856;2857 7329;7330;7331;7332 11454;11455;11456;11457 11455 1114 4 EELMSSDLEETAGSTSIPK SISFSKPKKKKSFSKEELMSSDLEETAGST SSDLEETAGSTSIPKRKKSTPKEETVNDPE K E E P K R 1 0 0 1 0 0 4 1 0 1 2 1 1 0 1 4 2 0 0 0 0 0 19 0 2022.9303 A8K9K6;O00567;Q9BSN3 A8K9K6 515 533 NOP56 Nucleolar protein 56 yes no 2 6.91E-23 130.61 3 2 0.89537 0.86504 42.336 4 Median 1.0813 1.2308 42.845 3 0 Median 0.74143 0.60799 NaN 1 0 Median 330560000 169890000 160670000 286760000 142030000 144730000 43802000 27860000 15943000 2786 785 2858;2859 7333;7334;7335;7336;7337 11458;11459;11460;11461;11462;11463;11464;11465 11458 619 8 EELNAISGPNEFAEFYNR GNLRDLYDDKDGLRKEELNAISGPNEFAEF NAISGPNEFAEFYNRLKQIKEFHRKHPNEI K E E N R L 2 1 3 0 0 0 4 1 0 1 1 0 0 2 1 1 0 0 1 0 0 0 18 0 2098.9596 Q53HM6;B3KY12;A8K7V1;A8K566;Q12874 Q53HM6 70 87 SF3A3 Splicing factor 3A subunit 3 yes no 2 0.0004567 59.898 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11975000 0 11975000 10274000 0 10274000 1701300 0 1701300 2787 747 2860 7338;7339;7340 11466;11467;11468 11467 3 EELPVIPK KGSSSQAPASKKLNKEELPVIPKGKPKSGR ASKKLNKEELPVIPKGKPKSGRVWKDRSKK K E E P K G 0 0 0 0 0 0 2 0 0 1 1 1 0 0 2 0 0 0 0 1 0 0 8 0 923.53278 Q9H6F5 Q9H6F5 230 237 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.013659 64.803 2 2 0.58914 0.57889 42.702 4 Median 0.72688 0.84255 2.2097 2 0 Median 0.48611 0.40229 0.60365 2 0 Median 539580000 316680000 222900000 460660000 263460000 197200000 78917000 53221000 25696000 2788 2037 2861 7341;7342;7343;7344 11469;11470;11471;11472;11473;11474;11475 11474 7 EELRELNDR TTPLSPTRLSRLQEKEELRELNDRLAVYID SRLQEKEELRELNDRLAVYIDKVRSLETEN K E E D R L 0 2 1 1 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1172.5786 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5;Q03252 P20700 34 42 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 3 0.0031132 63.076 1 1.273 1.2523 NaN 1 Median 1.273 1.2523 NaN 1 0 Median NaN NaN NaN 0 0 Median 5577100 2951300 2625800 5577100 2951300 2625800 0 0 0 2789 1502;1682 2862 7345 11476 11476 1 EELRLEEAK KSSPEERERMIKQLKEELRLEEAKLVLLKK MIKQLKEELRLEEAKLVLLKKLRQSQIQKE K E E A K L 1 1 0 0 0 0 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1115.5823 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;C9JHD7;C9JJK9 A0A024R7K7 150 158 GATAD2A Transcriptional repressor p66-alpha yes no 2 1.2321E-16 185.81 2 1 0.61064 0.71902 48.133 3 Median 0.58561 0.68536 6.7802 2 0 Median 1.8757 1.571 NaN 1 0 Median 80702000 46884000 33818000 74807000 44996000 29811000 5894600 1888100 4006600 2790 229 2863 7346;7347;7348 11477;11478;11479;11480;11481 11477 5 EELSAILK LHTGSAPSSSTPFNKEELSAILKFGAEELF SSTPFNKEELSAILKFGAEELFKEPEGEEQ K E E L K F 1 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 901.51205 O14646 O14646 963 970 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.023558 63.21 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12203000 5692900 6510100 12203000 5692900 6510100 0 0 0 2791 1366 2864 7349;7350;7351 11482;11483;11484;11485 11482 4 EELSALVAPAFAHTSQVLVDK AFALGGLGSGFASNREELSALVAPAFAHTS VAPAFAHTSQVLVDKSLKGWKEIEYEVVRD R E E D K S 4 0 0 1 0 1 2 0 1 0 3 1 0 1 1 2 1 0 0 3 0 0 21 0 2224.1739 Q53SY7;F8VPD4;P27708 Q53SY7 498 518 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 1.291E-07 59.585 1 0.99558 1.0048 NaN 1 Median 0.99558 1.0048 NaN 1 0 Median NaN NaN NaN 0 0 Median 13273000 6832600 6440600 13273000 6832600 6440600 0 0 0 2792 1259 2865 7352 11486 11486 1 EELSAVER STKRCPKTRPRKEVKEELSAVERLTQTSGQ RPRKEVKEELSAVERLTQTSGQSTHTHKEP K E E E R L 1 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 931.46108 P46013 P46013 2614 2621 MKI67 Antigen KI-67 yes yes 2 8.434E-05 137.18 2 2 2.1885 2.2243 21.703 4 Median 1.5193 1.7848 13.73 2 0 Median 2.9189 2.5323 0.94117 2 0 Median 989190000 367810000 621380000 851730000 332130000 519600000 137460000 35677000 101780000 2793 1569 2866 7353;7354;7355;7356 11487;11488;11489;11490;11491;11492;11493;11494 11490 8 EELSEEGYLAK EIKNQLCDLETKLRKEELSEEGYLAKVKSL KLRKEELSEEGYLAKVKSLLNKDLSLENGA K E E A K V 1 0 0 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1266.598 A0A024R7E3;P26358;Q59FP7;K7EJL0 A0A024R7E3 133 143 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 2.7964E-05 102.07 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13857000 13857000 0 11592000 11592000 0 2264700 2264700 0 2794 222 2867 7357;7358 11495;11496 11495 2 EELSNVLAAMR IKKRVGTHIRAKRKREELSNVLAAMRKAAA KRKREELSNVLAAMRKAAAKKD________ R E E M R K 2 1 1 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 11 0 1231.6231 Q9Y3U8 Q9Y3U8 88 98 RPL36 60S ribosomal protein L36 yes yes 2 1.8517E-16 131.62 5 6 1.8343 2.0721 72.899 4 Linear 1.7672 2.0218 NaN 1 0 Median 0.7057 0.57009 21.76 3 0 Plateau 243560000 144000000 99558000 214830000 124720000 90104000 28730000 19276000 9453700 2795 2140 2868;2869 7359;7360;7361;7362;7363;7364;7365;7366;7367;7368;7369 11497;11498;11499;11500;11501;11502;11503;11504;11505;11506;11507;11508;11509;11510 11500 1980 14 EELSNVLAAMRK IKKRVGTHIRAKRKREELSNVLAAMRKAAA RKREELSNVLAAMRKAAAKKD_________ R E E R K A 2 1 1 0 0 0 2 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 12 1 1359.718 Q9Y3U8 Q9Y3U8 88 99 RPL36 60S ribosomal protein L36 yes yes 3 0.0044483 44.616 1 1.7511 1.9835 NaN 1 Median 1.7511 1.9835 NaN 1 0 Median NaN NaN NaN 0 0 Median 16536000 5918800 10617000 16536000 5918800 10617000 0 0 0 2796 2140 2870 7370 11511 11511 1980 1 EELTLEGIR TKKFMRDPIRILVKKEELTLEGIRQFYINV RILVKKEELTLEGIRQFYINVEREEWKLDT K E E I R Q 0 1 0 0 0 0 3 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1058.5608 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;B4DNH2;J3KSZ0;J3KTN0;B4DKP9 A8K7F6 239 247 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 0.0010522 90.657 2 1 2.0742 2.3602 39.705 3 Plateau 2.0487 2.3091 5.5962 2 0 Median 1.3988 1.1648 NaN 1 0 Median 178700000 58769000 119930000 172440000 56392000 116050000 6256500 2377100 3879400 2797 770 2871 7371;7372;7373 11512;11513;11514;11515;11516;11517;11518 11515 7 EELVLELQTAK IKELELEVINLQKEKEELVLELQTAKKDAN QKEKEELVLELQTAKKDANQAKLSERRRKR K E E A K K 1 0 0 0 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1271.6973 Q59HG1;O95239;Q6PKB2;B4DYE2 Q59HG1 579 589 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 3.708E-13 148.94 2 0.83354 0.93852 NaN 1 Median 0.83354 0.93852 NaN 1 0 Median NaN NaN NaN 0 0 Median 106480000 40247000 66237000 106480000 40247000 66237000 0 0 0 2798 1803 2872 7374;7375 11519;11520;11521 11519 3 EELYLQR EMKPNLGAIAEYKKKEELYLQRVAELDKIT AIAEYKKKEELYLQRVAELDKITYERDSFR K E E Q R V 0 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 949.4869 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1100 1106 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0085438 127.66 2 1 0.84072 0.96204 12.564 3 Median 0.82289 0.94039 3.2182 2 0 Median 1.4275 1.1648 NaN 1 0 Median 297070000 162520000 134550000 284220000 157310000 126910000 12854000 5213400 7640500 2799 2070 2873 7376;7377;7378 11522;11523;11524;11525 11524 4 EELYQNLTR AFRALSSEGKPYVTKEELYQNLTREQADYC KPYVTKEELYQNLTREQADYCVSHMKPYVD K E E T R E 0 1 1 0 0 1 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1164.5775 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1 A0A0D9SF54 2412 2420 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 9.6685E-06 127.56 2 1.3083 1.3447 2.4779 2 Median 1.3083 1.3447 2.4779 2 0 Median NaN NaN NaN 0 0 Median 30487000 12010000 18476000 30487000 12010000 18476000 0 0 0 2800 523 2874 7379;7380 11526;11527 11527 2 EENAEQQALAAK NKKDELQSERNYLWREENAEQQALAAKRED LWREENAEQQALAAKREDLEKKQQLLRAAT R E E A K R 4 0 1 0 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 12 0 1300.6259 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 475 486 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 7.7105E-23 157.96 2 2 0.97883 0.9002 10.386 4 Median 0.80815 0.8258 13.087 2 0 Median 1.1469 0.92533 4.7811 2 0 Median 58556000 29540000 29017000 42024000 22014000 20010000 16533000 7525800 9007100 2801 803 2875 7381;7382;7383;7384 11528;11529;11530;11531;11532;11533;11534;11535 11528 8 EENAGAEAAQSLSHEQPQDSSEAGAAALPR GGGLNIAEPSGGAGREENAGAEAAQSLSHE QPQDSSEAGAAALPRGPEEPERPVRRSFQI R E E P R G 8 1 1 1 0 3 5 2 1 0 2 0 0 0 2 4 0 0 0 0 0 0 30 0 3020.3708 Q9UK61 Q9UK61 58 87 FAM208A Protein FAM208A yes yes 3 3.761E-07 40.819 1 1.0947 1.0802 NaN 1 Median 1.0947 1.0802 NaN 1 0 Median NaN NaN NaN 0 0 Median 14847000 6229700 8617700 14847000 6229700 8617700 0 0 0 2802 2105 2876 7385 11536;11537;11538;11539 11539 4 EENFFGPK EAQFKAQGRIYGKLKEENFFGPKEEVKLET RIYGKLKEENFFGPKEEVKLETHIRVPASA K E E P K E 0 0 1 0 0 0 2 1 0 0 0 1 0 2 1 0 0 0 0 0 0 0 8 0 966.4447 Q9NZI8;D3DTW3 Q9NZI8 476 483 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 0.016899 60.799 2 2.6941 2.7438 10.74 2 Median 2.6941 2.7438 10.74 2 0 Median NaN NaN NaN 0 0 Median 56452000 17899000 38553000 56452000 17899000 38553000 0 0 0 2803 2087 2877 7386;7387 11540;11541 11540 2 EENSHTEQPPLMK LPPSLDHNYAQWQEREENSHTEQPPLMKKI EREENSHTEQPPLMKKIIPAPKPKGPGEPD R E E M K K 0 0 1 0 0 1 3 0 1 0 1 1 1 0 2 1 1 0 0 0 0 0 13 0 1538.7035 Q03164 Q03164 1809 1821 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.00077461 57.174 1 0.47965 0.47491 NaN 1 Median 0.47965 0.47491 NaN 1 0 Median NaN NaN NaN 0 0 Median 5879100 3988000 1891200 5879100 3988000 1891200 0 0 0 2804 1680 2878 7388 11542 11542 1489 1 EENSTEEQALEDQNAK YYKEIEDRQKLKRKKEENSTEEQALEDQNA ENSTEEQALEDQNAKRAITYQIAKNRGLTP K E E A K R 2 0 2 1 0 2 5 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 16 0 1833.7864 Q9NQZ2 Q9NQZ2 393 408 UTP3 Something about silencing protein 10 yes yes 2 1.2527E-33 153.34 4 2 1.1798 1.0445 3.6946 4 Median 1.0171 1.0172 5.316 2 0 Median 1.3065 1.0477 1.9993 2 0 Median 90794000 40563000 50231000 53162000 23592000 29569000 37633000 16971000 20662000 2805 2063 2879 7389;7390;7391;7392;7393;7394 11543;11544;11545;11546;11547;11548;11549 11543 7 EENVDIEGLDPAPSVSALTPHAGTGPVNPPAR YHSVTVPLVGEPGPKEENVDIEGLDPAPSV LTPHAGTGPVNPPARCSRTFITFSDDATFE K E E A R C 4 1 2 2 0 0 3 3 1 1 2 0 0 0 6 2 2 0 0 3 0 0 32 0 3206.5844 Q15906 Q15906 229 260 VPS72 Vacuolar protein sorting-associated protein 72 homolog yes yes 3 0.022224 14.636 1 2 0.88689 0.84433 10.871 3 Median 0.84739 0.84433 NaN 1 0 Median 0.98803 0.83074 15.317 2 0 Median 25798000 14394000 11404000 16523000 9982800 6539800 9275500 4411300 4864100 2806 1767 2880 7395;7396;7397 11550;11551;11552;11553;11554;11555 11554 6 EEPAIAPIEHVLSGWK LKNRQAEQLVFPLEKEEPAIAPIEHVLSGW EPAIAPIEHVLSGWKARTPLEQEIFNLLHK K E E W K A 2 0 0 0 0 0 3 1 1 2 1 1 0 0 2 1 0 1 0 1 0 0 16 0 1774.9254 Q9BVJ6;B4E343 Q9BVJ6 164 179 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2;3 4.6641E-05 66.673 2 3 1.4284 1.1422 17.325 4 Median 0.85719 0.85928 NaN 1 0 Median 1.4427 1.1647 7.3054 3 0 Median 53515000 20661000 32854000 21846000 8547700 13299000 31669000 12114000 19555000 2807 2008 2881 7398;7399;7400;7401;7402 11556;11557;11558;11559;11560;11561;11562;11563;11564 11559 9 EEPAPEEEEPLLLQRPER KQKASSEGTIPQVQREEPAPEEEEPLLLQR APEEEEPLLLQRPERVQTLEELEELGKEEC R E E E R V 1 2 0 0 0 1 7 0 0 0 3 0 0 0 4 0 0 0 0 0 0 0 18 1 2160.0699 Q9BVJ6;B4E343 Q9BVJ6 490 507 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 1.9333E-06 67.646 2 2 1.1301 1.1516 5.2245 4 Median 0.97223 1.101 4.2443 2 0 Median 1.3631 1.1884 2.3464 2 0 Median 304950000 143560000 161380000 249650000 120880000 128780000 55295000 22688000 32608000 2808 2008 2882 7403;7404;7405;7406 11565;11566;11567;11568;11569;11570;11571 11570 7 EEPFFPPPEEFVFIHAVPVEER VLCKNCVVELNFGQKEEPFFPPPEEFVFIH PEEFVFIHAVPVEERVRTAVPPKTIEECEV K E E E R V 1 1 0 0 0 0 6 0 1 1 0 0 0 4 5 0 0 0 0 3 0 0 22 0 2640.29 H3BQZ7;Q1KMD3 H3BQZ7 418 439 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 3 2.6631E-08 62.19 2 0.79671 0.7937 1.5097 2 Median 0.79671 0.7937 1.5097 2 0 Median NaN NaN NaN 0 0 Median 21366000 12583000 8782300 21366000 12583000 8782300 0 0 0 2809 1303 2883 7407;7408 11572;11573;11574;11575 11575 4 EEPGSDSGTTAVVALIR EEEEEEMMVPGMEGKEEPGSDSGTTAVVAL PGSDSGTTAVVALIRGKQLIVANAGDSRCV K E E I R G 2 1 0 1 0 0 2 2 0 1 1 0 0 0 1 2 2 0 0 2 0 0 17 0 1700.8581 B4DDC8;B3KXL8;Q6IAU5;B2R665;O15355;Q96IN7;Q59GB2 B4DDC8 290 306 PPM1G Protein phosphatase 1G yes no 2 1.0528E-09 103.88 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13484000 0 13484000 13484000 0 13484000 0 0 0 2810 839 2884 7409;7410 11576;11577 11577 2 EEPLAVSK SKQRLKIPLVKVDMKEEPLAVSKLTRTSGE LVKVDMKEEPLAVSKLTRTSGETTQTHTEP K E E S K L 1 0 0 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 8 0 871.4651 P46013 P46013 2493 2500 MKI67 Antigen KI-67 yes yes 2 0.024775 62.464 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 199200000 0 199200000 199200000 0 199200000 0 0 0 2811 1569 2885 7411;7412 11578;11579 11578 2 EEPLSEEEPCTSTAIASPEK SVKKKKKRGKKKHIKEEPLSEEEPCTSTAI EEEPCTSTAIASPEKKKKKKKKRENED___ K E E E K K 2 0 0 0 1 0 6 0 0 1 1 1 0 0 3 3 2 0 0 0 0 0 20 0 2202.9838 Q9Y2X3;B3KN82 Q9Y2X3 498 517 NOP58 Nucleolar protein 58 yes no 2 9.9166E-65 177.63 2 1.8964 1.8912 1.1325 2 Median 1.8964 1.8912 1.1325 2 0 Median NaN NaN NaN 0 0 Median 51192000 19194000 31998000 51192000 19194000 31998000 0 0 0 2812 2129 2886 7413;7414 11580;11581;11582;11583;11584;11585 11583 6 EEPVEEAEEEAPEASTAPK PEDLSLSKQLKIQVKEEPVEEAEEEAPEAS EEAEEEAPEASTAPKEAGPSKEASLWPCEK K E E P K E 4 0 0 0 0 0 8 0 0 0 0 1 0 0 3 1 1 0 0 1 0 0 19 0 2040.9011 Q9ULJ3 Q9ULJ3 880 898 ZBTB21 Zinc finger and BTB domain-containing protein 21 yes yes 2 1.5264E-07 93.494 1 1 1.0091 0.78908 NaN 1 Median NaN NaN NaN 0 0 Median 1.0091 0.78908 NaN 1 0 Median 3708800 1910000 1798800 0 0 0 3708800 1910000 1798800 2813 2109 2887 7415;7416 11586;11587 11586 2 EEPVTADVINPMALR KPLEVNAIKKEAGTKEEPVTADVINPMALR EEPVTADVINPMALRQREELREKLAAAKEK K E E L R Q 2 1 1 1 0 0 2 0 0 1 1 0 1 0 2 0 1 0 0 2 0 0 15 0 1653.8396 O43290 O43290 148 162 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.0016365 55.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9015400 9015400 0 9015400 9015400 0 0 0 0 2814 1384 2888 7417 11588 11588 1055 1 EEQMDGTVTLK LGDMEGRLFMLLLEKEEQMDGTVTLKDLRV LLEKEEQMDGTVTLKDLRVELLGETSIAEC K E E L K D 0 0 0 1 0 1 2 1 0 0 1 1 1 0 0 0 2 0 0 1 0 0 11 0 1249.586 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 288 298 DDB1 DNA damage-binding protein 1 yes no 2 2.4629E-08 117.31 2 4 1.2079 1.131 6.1704 4 Median 0.95402 1.0725 0.43505 2 0 Median 1.5183 1.1933 0.4989 2 0 Median 190300000 92250000 98046000 170430000 83493000 86941000 19862000 8757500 11105000 2815 1770 2889;2890 7418;7419;7420;7421;7422;7423 11589;11590;11591;11592;11593;11594;11595;11596;11597 11591 1634 9 EEQVQGPVELLSIPEDAPEK SVKIYPSEFGKERMKEEQVQGPVELLSIPE GPVELLSIPEDAPEKDWTSREKLRDYQFKR K E E E K D 1 0 0 1 0 2 5 1 0 1 2 1 0 0 3 1 0 0 0 2 0 0 20 0 2206.1005 Q9H501;A0JLU5;Q05C10;A0A087WX71 Q9H501 396 415 ESF1 ESF1 homolog yes no 2 6.7403E-07 81.311 1 0.71306 0.72277 NaN 1 Median 0.71306 0.72277 NaN 1 0 Median NaN NaN NaN 0 0 Median 18207000 10946000 7261600 18207000 10946000 7261600 0 0 0 2816 2033 2891 7424 11598;11599 11598 2 EESAATQALK IHPDQKNINAYVVFKEESAATQALKRNGAQ YVVFKEESAATQALKRNGAQIADGFRIRVD K E E L K R 3 0 0 0 0 1 2 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 10 0 1046.5244 P42696;A2A2V2 P42696 252 261 RBM34 RNA-binding protein 34 yes no 2 0.0026988 67.897 1 0.94047 0.97367 NaN 1 Median 0.94047 0.97367 NaN 1 0 Median NaN NaN NaN 0 0 Median 11177000 5144900 6032200 11177000 5144900 6032200 0 0 0 2817 1566 2892 7425 11600 11600 1 EESDDEAAVEEEEEEK VEEPMEEEEAAKEEKEESDDEAAVEEEEEE ESDDEAAVEEEEEEKKPKTKKVEKTVWDWE K E E E K K 2 0 0 2 0 0 9 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 16 0 1865.7174 Q5CAQ5;V9HWP2;P14625;B4DU71;Q59FC6 Q5CAQ5 304 319 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 2 0.00088609 57.175 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2818 1482 2893 7426 11601 11601 1 EESGKPGAHVTVK SIDGRVVEPKRAVAREESGKPGAHVTVKKL AREESGKPGAHVTVKKLFVGGIKEDTEEHH R E E V K K 1 0 0 0 0 0 2 2 1 0 0 2 0 0 1 1 1 0 0 2 0 0 13 1 1337.6939 P22626;A0A087WUI2;I6L957;A0A024RA28 P22626 100 112 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 5.7492E-30 182.71 4 2 1.7067 1.7816 44.828 6 Median 2.2097 2.5879 37.708 4 0 Median 1.3435 1.1414 2.5263 2 0 Median 319260000 99947000 219310000 291120000 87942000 203180000 28135000 12006000 16129000 2819 1508 2894 7427;7428;7429;7430;7431;7432 11602;11603;11604;11605;11606;11607;11608;11609;11610;11611;11612 11606 11 EESQIPVDEVFFHR DIRHLPVNSKEFLAKEESQIPVDEVFFHRY KEESQIPVDEVFFHRYYKKVAVKEKQKRDA K E E H R Y 0 1 0 1 0 1 3 0 1 1 0 0 0 2 1 1 0 0 0 2 0 0 14 0 1730.8264 B2R5U7;Q03701 B2R5U7 803 816 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 2.9377E-05 66.215 2 2 1.0474 1.0253 9.5452 4 Median 0.98517 1.0907 6.4043 2 0 Median 1.1635 0.95575 7.6006 2 0 Median 141420000 64057000 77366000 111660000 50623000 61039000 29760000 13433000 16327000 2820 836;1683 2895 7433;7434;7435;7436 11613;11614;11615;11616;11617;11618;11619;11620;11621 11616 9 EESSELEQPFAQDTSSVGPDR ILDILGETCKSEPVKEESSELEQPFAQDTS EQPFAQDTSSVGPDRKLAEEEDLFDSAHPE K E E D R K 1 1 0 2 0 2 4 1 0 0 1 0 0 1 2 4 1 0 0 1 0 0 21 0 2307.0139 Q14151;A0PJ47 Q14151 231 251 SAFB2 Scaffold attachment factor B2 no no 2 0.036532 33.204 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2821 1727 2896 7437 11622 11622 1 EESSELEQPFAQDTSSVGPDRK ILDILGETCKSEPVKEESSELEQPFAQDTS QPFAQDTSSVGPDRKLAEEEDLFDSAHPEE K E E R K L 1 1 0 2 0 2 4 1 0 0 1 1 0 1 2 4 1 0 0 1 0 0 22 1 2435.1088 Q14151;A0PJ47 Q14151 231 252 SAFB2 Scaffold attachment factor B2 no no 3 1.9252E-07 50.055 1 1.3118 1.4035 NaN 1 Median 1.3118 1.4035 NaN 1 0 Median NaN NaN NaN 0 0 Median 12808000 4212900 8595600 12808000 4212900 8595600 0 0 0 2822 1727 2897 7438 11623 11623 1 EESTTGNANLLEK LHRLAQEREAAKAKKEESTTGNANLLEKTG KKEESTTGNANLLEKTGGVDFHMKAVPGTE K E E E K T 1 0 2 0 0 0 3 1 0 0 2 1 0 0 0 1 2 0 0 0 0 0 13 0 1404.6733 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H797;F5H692;F5H7D5 A0A024R250 107 119 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.005387 57.885 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2398500 2398500 0 0 0 0 2398500 2398500 0 2823 104 2898 7439 11624 11624 1 EETFTLSTIK NFEAAWDEVGDEFEKEETFTLSTIKTLEEA DEFEKEETFTLSTIKTLEEAVGNIVKFLGM K E E I K T 0 0 0 0 0 0 2 0 0 1 1 1 0 1 0 1 3 0 0 0 0 0 10 0 1167.6023 Q9Y678;B3KW21;Q8WUI6;H0Y8X7 Q9Y678 786 795 COPG1;COPG Coatomer subunit gamma-1 yes no 2 0.0015966 72.928 1 1.4121 1.4724 NaN 1 Median 1.4121 1.4724 NaN 1 0 Median NaN NaN NaN 0 0 Median 34092000 13906000 20186000 34092000 13906000 20186000 0 0 0 2824 2151 2899 7440 11625 11625 1 EETLNMQGLK E E L K 0 0 1 0 0 1 2 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1161.57 REV__C9JAY6 yes no 2 0.015918 41.652 1 0.63684 0.71195 NaN 1 Median 0.63684 0.71195 NaN 1 0 Median NaN NaN NaN 0 0 Median 103840000 64120000 39717000 103840000 64120000 39717000 0 0 0 + 2825 2162 2900 7441 11626 11626 2006 1 EETLVIPSTGIK IPSSTFSAHNRREEKEETLVIPSTGIKLPS EEKEETLVIPSTGIKLPSSVFASEFEEDVG K E E I K L 0 0 0 0 0 0 2 1 0 2 1 1 0 0 1 1 2 0 0 1 0 0 12 0 1285.7129 Q96GA3;B4DTT8 Q96GA3 97 108 LTV1 Protein LTV1 homolog yes no 2 0.00020091 78.939 1 1.1195 1.1282 NaN 1 Median 1.1195 1.1282 NaN 1 0 Median NaN NaN NaN 0 0 Median 10019000 4727200 5291400 10019000 4727200 5291400 0 0 0 2826 1966 2901 7442 11627;11628 11628 2 EETPGQRPAVTETHQLAELNEK FRLMLLEKDVNPGGKEETPGQRPAVTETHQ PAVTETHQLAELNEKKNERLRAAFGISDSY K E E E K K 2 1 1 0 0 2 5 1 1 0 2 1 0 0 2 0 3 0 0 1 0 0 22 1 2476.2194 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8;I3L1I8;A0A087X1W1;I3L1C0;Q05BI2;Q05CV9 A0A140VK53 109 130 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 3;4 1.5976E-07 53.033 2 1.3853 1.5721 14.335 2 Median 1.3853 1.5721 14.335 2 0 Median NaN NaN NaN 0 0 Median 35599000 11123000 24477000 35599000 11123000 24477000 0 0 0 2827 619 2902 7443;7444 11629;11630 11630 2 EETVGIFSPLSVK KRCSKVVSFSKPIEKEETVGIFSPLSVKLN EKEETVGIFSPLSVKLNIVISPYHFDNSWK K E E V K L 0 0 0 0 0 0 2 1 0 1 1 1 0 1 1 2 1 0 0 2 0 0 13 0 1404.75 A0A0D9SFM0;Q149N8;H7C2W2 A0A0D9SFM0 86 98 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 0.00032476 64.439 2 0.99598 0.9947 3.5294 2 Median 0.99598 0.9947 3.5294 2 0 Median NaN NaN NaN 0 0 Median 13321000 7190700 6130100 13321000 7190700 6130100 0 0 0 2828 527 2903 7445;7446 11631;11632 11632 2 EETVLATVQALQTASHLSQQADLR ASQEALSALTARLSKEETVLATVQALQTAS ALQTASHLSQQADLRSIVEEIEDLVARLDE K E E L R S 4 1 0 1 0 4 2 0 1 0 4 0 0 0 0 2 3 0 0 2 0 0 24 0 2608.3457 B2RE46;P04844 B2RE46 155 178 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 3 0.035713 13.248 1 0.55579 0.46564 NaN 1 Median NaN NaN NaN 0 0 Median 0.55579 0.46564 NaN 1 0 Median 4022900 2448400 1574500 0 0 0 4022900 2448400 1574500 2829 894 2904 7447 11633 11633 1 EETVNDPEEAGHR AGSTSIPKRKKSTPKEETVNDPEEAGHRSG PKEETVNDPEEAGHRSGSKKKRKFSKGEPV K E E H R S 1 1 1 1 0 0 4 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 13 0 1481.6383 A8K9K6;O00567;Q9BSN3 A8K9K6 541 553 NOP56 Nucleolar protein 56 yes no 2;3 7.562E-142 302.09 4 4 0.86318 0.8497 8.9166 8 Median 0.77847 0.89908 4.8931 4 0 Median 0.92971 0.7925 6.1798 4 0 Median 1220100000 690770000 529280000 1063600000 610000000 453610000 156430000 80768000 75667000 2830 785 2905 7448;7449;7450;7451;7452;7453;7454;7455 11634;11635;11636;11637;11638;11639;11640;11641;11642;11643;11644;11645;11646;11647;11648 11637 15 EEVEDLCR SIHGVKEAVQLVNTREEVEDLCRLDKMIDL VQLVNTREEVEDLCRLDKMIDLIIPRGSSQ R E E C R L 0 1 0 1 1 0 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 1048.4495 P54886 P54886 540 547 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0021172 102.72 2 2.3527 2.3569 NaN 1 Median 2.3527 2.3569 NaN 1 0 Median NaN NaN NaN 0 0 Median 23809000 4354300 19455000 23809000 4354300 19455000 0 0 0 2831 1611 2906 7456;7457 11649;11650 11650 2 EEVEEVLDSK MQDPLSPKAPLICTKEEVEEVLDSKAGWGS LICTKEEVEEVLDSKAGWGSPCHLSGESVI K E E S K A 0 0 0 1 0 0 4 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 0 1175.5558 Q7Z5J4;A8MXE8 Q7Z5J4 902 911 RAI1 Retinoic acid-induced protein 1 yes no 2 2.0467E-05 93.649 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2832 1879 2907 7458;7459 11651;11652 11652 2 EEVGEEAIVELVENGK WVPSDKSGFEPASLKEEVGEEAIVELVENG EVGEEAIVELVENGKKVKVNKDDIQKMNPP K E E G K K 1 0 1 0 0 0 6 2 0 1 1 1 0 0 0 0 0 0 0 3 0 0 16 0 1742.8574 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;Q5BKV1;B1AH99 A0A024R1N1 48 63 MYH9 Myosin-9 yes no 2 1.763E-08 102.66 2 2.9331 2.3829 11.728 2 Median NaN NaN NaN 0 0 Median 2.9331 2.3829 11.728 2 0 Median 20026000 6021500 14005000 0 0 0 20026000 6021500 14005000 2833 81 2908 7460;7461 11653;11654;11655 11653 3 EEVGEEAIVELVENGKK WVPSDKSGFEPASLKEEVGEEAIVELVENG VGEEAIVELVENGKKVKVNKDDIQKMNPPK K E E K K V 1 0 1 0 0 0 6 2 0 1 1 2 0 0 0 0 0 0 0 3 0 0 17 1 1870.9524 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;Q5BKV1;B1AH99 A0A024R1N1 48 64 MYH9 Myosin-9 yes no 2;3 1.899E-05 65.225 2 1 1.8013 2.1321 NaN 1 Median 1.8013 2.1321 NaN 1 0 Median NaN NaN NaN 0 0 Median 40218000 10565000 29653000 35142000 10565000 24577000 5075500 0 5075500 2834 81 2909 7462;7463;7464 11656;11657;11658;11659 11657 4 EEVGINTETSSAER FPGSEEICSSSKRSKEEVGINTETSSAERK KEEVGINTETSSAERKRRLPVWFAKGSDTS K E E E R K 1 1 1 0 0 0 4 1 0 1 0 0 0 0 0 2 2 0 0 1 0 0 14 0 1520.6954 Q14191;Q59F09 Q14191 1390 1403 WRN Werner syndrome ATP-dependent helicase yes no 2 9.1553E-11 113.69 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2835 1728 2910 7465 11660 11660 1 EEVNEWFTK RLRGEVGLLFTNRTKEEVNEWFTKYTEMDY FTNRTKEEVNEWFTKYTEMDYARAGNKAAF K E E T K Y 0 0 1 0 0 0 3 0 0 0 0 1 0 1 0 0 1 1 0 1 0 0 9 0 1180.5401 A0A024RAE1;Q9UKD2 A0A024RAE1 110 118 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 0.00055371 97.635 1 0.76394 0.85195 NaN 1 Median 0.76394 0.85195 NaN 1 0 Median NaN NaN NaN 0 0 Median 62024000 36882000 25142000 62024000 36882000 25142000 0 0 0 2836 302 2911 7466 11661 11661 1 EEVPTALVEAHVR SAAAKSALEEFSKMKEEVPTALVEAHVRKV MKEEVPTALVEAHVRKVEEAAKVTGKADPA K E E V R K 2 1 0 0 0 0 3 0 1 0 1 0 0 0 1 0 1 0 0 3 0 0 13 0 1448.7623 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 740 752 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 3 0.00010131 64.224 1 0.64884 0.65452 NaN 1 Median 0.64884 0.65452 NaN 1 0 Median NaN NaN NaN 0 0 Median 19629000 13249000 6379800 19629000 13249000 6379800 0 0 0 2837 321 2912 7467 11662 11662 1 EEVQSLREEAEK ASNSARAAERSSALREEVQSLREEAEKQRV ALREEVQSLREEAEKQRVASENLRQELTSQ R E E E K Q 1 1 0 0 0 1 5 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1445.6998 A0A024R5M9;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1292 1303 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 1.9912E-28 164.9 2 1 0.81063 0.93441 24.953 3 Median 0.77542 0.88747 7.2879 2 0 Median 1.5792 1.3546 NaN 1 0 Median 55601000 27713000 27888000 52976000 26718000 26257000 2625400 994580 1630800 2838 186;1747 2913 7468;7469;7470 11663;11664;11665;11666 11665 4 EEVSIEVLK THLILFFRTLGLQTKEEVSIEVLKTYIQLL LGLQTKEEVSIEVLKTYIQLLIREKHTNLI K E E L K T 0 0 0 0 0 0 3 0 0 1 1 1 0 0 0 1 0 0 0 2 0 0 9 0 1044.5703 P57740;B3KMK0 P57740 566 574 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.027045 53.968 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7267600 0 7267600 7267600 0 7267600 0 0 0 2839 1621 2914 7471;7472 11667;11668 11668 2 EEVTELLAR PSAKQLVPEHVVMTKEEVTELLARYKLREN HVVMTKEEVTELLARYKLRENQLPRIQAGD K E E A R Y 1 1 0 0 0 0 3 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1058.5608 A0A087WVZ9;E5KT65;P19388;B4DJ89;A0A087WWX0;A0A0A0MQR7 A0A087WVZ9 127 135 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 2 0.0036347 69.825 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2840 423 2915 7473 11669 11669 1 EEVTPEQLK RVKLQDGVHIIKETKEEVTPEQLKLMRTQD IIKETKEEVTPEQLKLMRTQDVKYIEMKRV K E E L K L 0 0 0 0 0 1 3 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1071.5448 Q9Y3A2 Q9Y3A2 87 95 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 2.5787E-05 113.26 2 0.94811 1.061 6.3896 2 Median 0.94811 1.061 6.3896 2 0 Median NaN NaN NaN 0 0 Median 135680000 64085000 71597000 135680000 64085000 71597000 0 0 0 2841 2132 2916 7474;7475 11670;11671;11672;11673 11672 4 EEYITSALESTEEK TTQKHLQETKLQLVKEEYITSALESTEEKL KEEYITSALESTEEKLHDAASKLLNTVEET K E E E K L 1 0 0 0 0 0 5 0 0 1 1 1 0 0 0 2 2 0 1 0 0 0 14 0 1627.7465 P52732;B2RAM6 P52732 478 491 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 8.5539E-05 87.667 2 1 2.09 2.1138 31.078 3 Plateau 2.078 2.095 5.3934 2 0 Median 1.5123 1.2279 NaN 1 0 Median 31952000 11289000 20662000 29080000 10409000 18671000 2871900 880730 1991100 2842 1602 2917 7476;7477;7478 11674;11675;11676;11677;11678;11679 11677 6 EFAAALTAER KPCGPQCYQHLEGAKEFAAALTAERIKTPP LEGAKEFAAALTAERIKTPPKRPGGRRRGR K E F E R I 4 1 0 0 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1077.5455 A0A090N8E9;Q15910;F2YMM1;S4S3R8;Q75MP9;Q75MQ0;B7Z8K5 A0A090N8E9 338 347 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 2 6.0796E-08 113.66 2 1 0.97745 1.1271 32.514 3 Median 0.97092 1.0545 9.4116 2 0 Median 2.126 1.8299 NaN 1 0 Median 96241000 47802000 48439000 88990000 45228000 43762000 7251300 2573900 4677400 2843 456 2918 7479;7480;7481 11680;11681;11682;11683;11684;11685 11681 6 EFADSLGIPFLETSAK SDLTTKKVVDNTTAKEFADSLGIPFLETSA FADSLGIPFLETSAKNATNVEQAFMTMAAE K E F A K N 2 0 0 1 0 0 2 1 0 1 2 1 0 2 1 2 1 0 0 0 0 0 16 0 1723.8669 E9PLD0;Q9H0U4;B7Z8M7;Q6FIG4;Q5U0I6;P62820;E7END7;Q92928;Q96RD8 E9PLD0 106 121 RAB1B;RAB1A;RAB1C Ras-related protein Rab-1B;Ras-related protein Rab-1A;Putative Ras-related protein Rab-1C yes no 2 1.2316E-17 132.14 2 1.7063 1.8815 1.4056 2 Median 1.7063 1.8815 1.4056 2 0 Median NaN NaN NaN 0 0 Median 100770000 38205000 62561000 100770000 38205000 62561000 0 0 0 2844 1246 2919 7482;7483 11686;11687;11688;11689 11688 4 EFAGEDTSDLFLEER PAFKEHLRDFLVQIKEFAGEDTSDLFLEER EFAGEDTSDLFLEEREIALRQADEEKHKRQ K E F E R E 1 1 0 2 0 0 4 1 0 0 2 0 0 2 0 1 1 0 0 0 0 0 15 0 1756.7792 O14980;B3KWD0;B7ZB16;B4DR01 O14980 1024 1038 XPO1 Exportin-1 yes no 2 0.0003568 74.46 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6579800 0 6579800 6579800 0 6579800 0 0 0 2845 1371 2920 7484 11690 11690 1 EFALSNLK YNACTLHGGKGQEQREFALSNLKAGAKDIL GKGQEQREFALSNLKAGAKDILVATDVAGR R E F L K A 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 8 0 920.49673 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 684 691 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0092222 75.243 2 0.88322 0.95173 6.5289 2 Median 0.88322 0.95173 6.5289 2 0 Median NaN NaN NaN 0 0 Median 78018000 43111000 34907000 78018000 43111000 34907000 0 0 0 2846 63 2921 7485;7486 11691;11692;11693;11694 11694 4 EFASHLQQLQDALNELTEEHSK NQLSEENGDLSFKLREFASHLQQLQDALNE QLQDALNELTEEHSKATQEWLEKQAQLEKE R E F S K A 2 0 1 1 0 3 4 0 2 0 4 1 0 1 0 2 1 0 0 0 0 0 22 0 2566.23 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 329 350 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 6.1985E-05 36.627 2 1.6418 1.31 78.79 2 Median NaN NaN NaN 0 0 Median 1.6418 1.31 78.79 2 0 Median 10850000 5276800 5573400 0 0 0 10850000 5276800 5573400 2847 186;1747;718 2922 7487;7488 11695;11696 11695 1 EFCENLSADCR DCEAEVRAAASHKVKEFCENLSADCRENVI HKVKEFCENLSADCRENVIMSQILPCIKEL K E F C R E 1 1 1 1 2 0 2 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 11 0 1399.5496 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;C9J9C1 B4DQY1 274 284 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 1.1752E-05 93.111 3 2 1.0504 0.94871 19.964 3 Median 1.1832 1.1966 NaN 1 0 Median 0.99858 0.87344 11.691 2 0 Median 18142000 10767000 7375000 13101000 8336900 4763800 5041800 2430500 2611200 2848 723 2923 7489;7490;7491;7492;7493 11697;11698;11699;11700;11701;11702 11699 6 EFEEGLVSQYK AEKSTKTRKETQKLREFEEGLVSQYKFYLE QKLREFEEGLVSQYKFYLENLEQMVKDWKQ R E F Y K F 0 0 0 0 0 1 3 1 0 0 1 1 0 1 0 1 0 0 1 1 0 0 11 0 1327.6296 A8K905;Q8WTT2;B4DXL4 A8K905 296 306 NOC3L Nucleolar complex protein 3 homolog yes no 2 7.5655E-10 126.07 1 1.1163 1.1147 NaN 1 Median 1.1163 1.1147 NaN 1 0 Median NaN NaN NaN 0 0 Median 15077000 8250300 6826900 15077000 8250300 6826900 0 0 0 2849 780 2924 7494 11703;11704 11704 2 EFEFSQLPLK DSSSTAPAQLGKKGKEFEFSQLPLKVEFLE GKKGKEFEFSQLPLKVEFLECSAKGGRGDV K E F L K V 0 0 0 0 0 1 2 0 0 0 2 1 0 2 1 1 0 0 0 0 0 0 10 0 1236.639 Q549N5;Q9Y5M8;H7C4H2 Q549N5 231 240 SRPRB Signal recognition particle receptor subunit beta yes no 2 1.0764E-07 114.28 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21246000 21246000 0 21246000 21246000 0 0 0 0 2850 1794 2925 7495;7496 11705;11706 11706 2 EFEQIDK ______________________________ ______________________________ K E F D K S 0 0 0 1 0 1 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 907.42871 A8K3M3;P18031 A8K3M3 6 12 PTPN1 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 1 yes no 2 0.040379 69.383 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3830700 0 3830700 3830700 0 3830700 0 0 0 2851 724 2926 7497;7498 11707;11708 11708 2 EFEQLRK YHKVVKKGKAKKALKEFEQLRKVNPAAALE GKAKKALKEFEQLRKVNPAAALEELEKIEK K E F R K V 0 1 0 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 948.50288 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 267 273 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0076836 132.96 1 2 1.526 1.2881 8.9445 3 Median 0.96018 1.1454 NaN 1 0 Median 1.5574 1.3261 4.1159 2 0 Median 70918000 33802000 37116000 50619000 25550000 25069000 20299000 8252000 12047000 2852 2008 2927 7499;7500;7501 11709;11710;11711;11712;11713 11709 5 EFESAIVEAAR GLHMTKGLALWEAYREFESAIVEAARLEKV EAYREFESAIVEAARLEKVHSLFRRQLAIP R E F A R L 3 1 0 0 0 0 3 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 11 0 1220.6037 Q15020;B4DRG9;F8VV04;B4E3R6;F8VVK9;F8VZM2;F8W667 Q15020 233 243 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0088364 60.518 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2853 1748 2928 7502 11714 11714 1 EFETPEK VLNEKKLQEVDSLWKEFETPEKANKIVKLK QEVDSLWKEFETPEKANKIVKLKHFEKFQD K E F E K A 0 0 0 0 0 0 3 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 7 0 878.40216 Q9Y2X3;B4DUY3;F8WED0 Q9Y2X3 31 37 NOP58 Nucleolar protein 58 yes no 2 0.025144 89.369 1 1 0.92114 0.8784 13.317 2 Median 0.8338 0.96514 NaN 1 0 Median 1.0176 0.79946 NaN 1 0 Median 249440000 133990000 115450000 232350000 125280000 107070000 17092000 8711700 8379900 2854 2129 2929 7503;7504 11715;11716;11717 11716 3 EFFEVANDVIPNLLK IQDYNYCREDEEIYKEFFEVANDVIPNLLK EFFEVANDVIPNLLKEAASLLEAGEERPGE K E F L K E 1 0 2 1 0 0 2 0 0 1 2 1 0 2 1 0 0 0 0 2 0 0 15 0 1746.9192 A0A024R570;A0A024R5E3;E7EN32;A0A024R5D2;O00255;Q9UE24 A0A024R570 328 342 MEN1 Menin yes no 2 0.00022114 76.143 2 0.97637 1.0197 NaN 1 Median 0.97637 1.0197 NaN 1 0 Median NaN NaN NaN 0 0 Median 16960000 7277000 9682600 16960000 7277000 9682600 0 0 0 2855 171 2930 7505;7506 11718;11719;11720;11721 11718 4 EFFEYFGNFAFDK IKPSQNTETLELLLKEFFEYFGNFAFDKNS LKEFFEYFGNFAFDKNSINIRQGREQNKPD K E F D K N 1 0 1 1 0 0 2 1 0 0 0 1 0 5 0 0 0 0 1 0 0 0 13 0 1659.7246 Q9NVV4 Q9NVV4 443 455 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 2 0.015499 50.284 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1324400 0 1324400 1324400 0 1324400 0 0 0 2856 2075 2931 7507;7508 11722;11723;11724 11724 3 EFFFNVYINK KRCPYSKFQIRELEREFFFNVYINKEKRLQ RELEREFFFNVYINKEKRLQLSRMLNLTDR R E F N K E 0 0 2 0 0 0 1 0 0 1 0 1 0 3 0 0 0 0 1 1 0 0 10 0 1319.655 O43248;Q14DW8;A0A087WWK9;P31277 O43248 250 259 HOXC11;HOXD11 Homeobox protein Hox-C11;Homeobox protein Hox-D11 no no 2 0.020744 62.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2857 1383;426 2932 7509 11725 11725 1 EFFMSFGNVVELR FVGNLPHDIDENELKEFFMSFGNVVELRIN LKEFFMSFGNVVELRINTKGVGGKLPNFGF K E F L R I 0 1 1 0 0 0 2 1 0 0 1 0 1 3 0 1 0 0 0 2 0 0 13 0 1573.7599 A0A024RDB2;A0A024RDE5;Q9UN86 A0A024RDB2 316 328 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 2 0.00085775 67.726 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6092400 0 6092400 6092400 0 6092400 0 0 0 2858 382 2933 7510;7511;7512 11726;11727;11728 11727 280 3 EFGATECINPQDFSK IIGVDINKDKFARAKEFGATECINPQDFSK EFGATECINPQDFSKPIQEVLIEMTDGGVD K E F S K P 1 0 1 1 1 1 2 1 0 1 0 1 0 2 1 1 1 0 0 0 0 0 15 0 1741.7618 Q6IRT1;Q6FI45;P11766;H0YAG8 Q6IRT1 234 248 ADH5 S-(hydroxymethyl)glutathione dehydrogenase;Alcohol dehydrogenase class-3 yes no 2 0.0050018 56.087 2 1 1.4994 1.2411 NaN 1 Median NaN NaN NaN 0 0 Median 1.4994 1.2411 NaN 1 0 Median 16954000 583920 16370000 15331000 0 15331000 1622700 583920 1038800 2859 1472 2934 7513;7514;7515 11729;11730;11731 11729 3 EFGFSGLNVK KNQSETLNWLSNAIKEFGFSGLNVKAFISN SNAIKEFGFSGLNVKAFISNVKTALAATNP K E F V K A 0 0 1 0 0 0 1 2 0 0 1 1 0 2 0 1 0 0 0 1 0 0 10 0 1096.5553 Q14008 Q14008 745 754 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0073232 57.59 1 0.6744 0.70358 NaN 1 Median 0.6744 0.70358 NaN 1 0 Median NaN NaN NaN 0 0 Median 10067000 5697200 4370200 10067000 5697200 4370200 0 0 0 2860 1725 2935 7516 11732;11733 11733 2 EFGIGDLVWGK ADSGDGDSSEYQDGKEFGIGDLVWGKIKGF QDGKEFGIGDLVWGKIKGFSWWPAMVVSWK K E F G K I 0 0 0 1 0 0 1 3 0 1 1 1 0 1 0 0 0 1 0 1 0 0 11 0 1219.6237 Q9UBC3;Q59H79;B4DSJ7;B4DHM3;B4DUZ5;Q2PJS8 Q9UBC3 222 232 DNMT3B DNA (cytosine-5)-methyltransferase 3B yes no 2 0.00074756 72.643 4 0.81797 0.90693 NaN 1 Median 0.81797 0.90693 NaN 1 0 Median NaN NaN NaN 0 0 Median 4889800 1338000 3551800 4889800 1338000 3551800 0 0 0 2861 2097 2936 7517;7518;7519;7520 11734;11735;11736;11737;11738 11738 5 EFHGNIIK DPPSAKAAIDWFDGKEFHGNIIKVSFATRR IDWFDGKEFHGNIIKVSFATRRPEFMRGGG K E F I K V 0 0 1 0 0 0 1 1 1 2 0 1 0 1 0 0 0 0 0 0 0 0 8 0 956.50797 B4E312;A0A075B7D9;Q92804 B4E312 110 117 TAF15 TATA-binding protein-associated factor 2N yes no 2 0.024382 55.902 1 1.7774 1.9269 NaN 1 Median 1.7774 1.9269 NaN 1 0 Median NaN NaN NaN 0 0 Median 44605000 14647000 29957000 44605000 14647000 29957000 0 0 0 2862 399 2937 7521 11739 11739 1 EFHLNESGDPSSK YFDENPYFENKVLSKEFHLNESGDPSSKST SKEFHLNESGDPSSKSTEIKWKSGKDLTKR K E F S K S 0 0 1 1 0 0 2 1 1 0 1 1 0 1 1 3 0 0 0 0 0 0 13 0 1445.6423 A0A0C4DFV9;B2RCX0;A0A024R895;Q5VXV3;A0A087X027;Q01105;P0DME0 A0A0C4DFV9 131 143 SET;SETSIP Protein SET;Protein SETSIP yes no 2 0.026695 44.425 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2863 244 2938 7522 11740 11740 1 EFIGQQLILIIK EHRGDFSYIGNLMTKEFIGQQLILIIKSLD MTKEFIGQQLILIIKSLDTSEEGGRKKLLA K E F I K S 0 0 0 0 0 2 1 1 0 4 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1413.8595 Q9BPX3;Q6NUR1 Q9BPX3 399 410 NCAPG Condensin complex subunit 3 yes no 2 1.6058E-37 175.91 2 0.84058 0.92043 15.649 2 Median 0.84058 0.92043 15.649 2 0 Median NaN NaN NaN 0 0 Median 89092000 49300000 39792000 89092000 49300000 39792000 0 0 0 2864 1995 2939 7523;7524 11741;11742;11743;11744 11744 4 EFIPCIFSSGIK IAGDDSTIVQVLEVKEFIPCIFSSGIKEDR EVKEFIPCIFSSGIKEDRISTINILLSTLK K E F I K E 0 0 0 0 1 0 1 1 0 3 0 1 0 2 1 2 0 0 0 0 0 0 12 0 1396.7061 O60287 O60287 222 233 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.001682 60.518 2 1 1.0776 0.98077 14.764 2 Median 0.87123 0.88354 NaN 1 0 Median 1.3327 1.0887 NaN 1 0 Median 12274000 3238800 9034900 10396000 2558000 7837500 1878200 680830 1197400 2865 1392 2940 7525;7526;7527 11745;11746;11747;11748 11745 4 EFIPLPR IYEAQPEISRAFQTREFIPLPRLLAMVMVT ISRAFQTREFIPLPRLLAMVMVTTVPLVCN R E F P R L 0 1 0 0 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 7 0 870.49634 O60287 O60287 415 421 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.036931 64.776 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39987000 0 39987000 39987000 0 39987000 0 0 0 2866 1392 2941 7528 11749 11749 1 EFLDFFWDIAKPEQETR GARPADRYGLLKHSREFLDFFWDIAKPEQE LDFFWDIAKPEQETRLAATEKLLEYLRGRP R E F T R L 1 1 0 2 0 1 3 0 0 1 1 1 0 3 1 0 1 1 0 0 0 0 17 1 2170.0371 Q9BQG0;B4DZZ1;B4DWP5 Q9BQG0 34 50 MYBBP1A Myb-binding protein 1A yes no 3 3.5692E-05 63.918 2 0.76098 0.83723 NaN 1 Median 0.76098 0.83723 NaN 1 0 Median NaN NaN NaN 0 0 Median 5809300 3743600 2065600 5809300 3743600 2065600 0 0 0 2867 1997 2942 7529;7530 11750;11751 11750 2 EFLEQLPK ITAKVGTLKRKQQMREFLEQLPKDDHDDFF KRKQQMREFLEQLPKDDHDDFFSTTPLQHQ R E F P K D 0 0 0 0 0 1 2 0 0 0 2 1 0 1 1 0 0 0 0 0 0 0 8 0 1002.5386 Q6P0N0 Q6P0N0 976 983 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.0079089 81.297 2 1.1604 1.1777 NaN 1 Median 1.1604 1.1777 NaN 1 0 Median NaN NaN NaN 0 0 Median 21511000 14410000 7100800 21511000 14410000 7100800 0 0 0 2868 1849 2943 7531;7532 11752;11753 11753 2 EFLFSLPDK DSIDPALRRPGRFDREFLFSLPDKEARKEI PGRFDREFLFSLPDKEARKEILKIHTRDWN R E F D K E 0 0 0 1 0 0 1 0 0 0 2 1 0 2 1 1 0 0 0 0 0 0 9 0 1094.5648 A0A024R9G7;Q6PL18 A0A024R9G7 593 601 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 0.018473 56.729 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2869 278 2944 7533 11754 11754 1 EFLLSLDDSVDETEAVK EIDLGVPPPVMKTFKEFLLSLDDSVDETEA LLSLDDSVDETEAVKRYNDYKLDFRRQQMQ K E F V K R 1 0 0 3 0 0 3 0 0 0 3 1 0 1 0 2 1 0 0 2 0 0 17 0 1908.9204 Q9BXP5;H7C0U8 Q9BXP5 154 170 SRRT Serrate RNA effector molecule homolog yes no 2 0.00015713 67.456 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2683800 0 2683800 2683800 0 2683800 0 0 0 2870 2013 2945 7534 11755;11756 11756 2 EFLQQQYR SAVLQRGIQNQAEPREFLQQQYRLFQTRLT QNQAEPREFLQQQYRLFQTRLTETHLPAQA R E F Y R L 0 1 0 0 0 3 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1110.5458 A0JLU2;B4DYG2;O43683;A8K5A6;C9JRC7;C9JQA4 A0JLU2 134 141 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 0.047328 44.721 1 1.2255 1.0672 NaN 1 Median NaN NaN NaN 0 0 Median 1.2255 1.0672 NaN 1 0 Median 1802800 742120 1060700 0 0 0 1802800 742120 1060700 2871 641 2946 7535 11757 11757 1 EFLVAGGEDFK EAPATINSASLHPEKEFLVAGGEDFKLYKY HPEKEFLVAGGEDFKLYKYDYNSGEELESY K E F F K L 1 0 0 1 0 0 2 2 0 0 1 1 0 2 0 0 0 0 0 1 0 0 11 0 1210.587 Q9Y3F4;B0AZV0;H0YH33 Q9Y3F4 236 246 STRAP Serine-threonine kinase receptor-associated protein yes no 2 0.0020746 78.098 2 3.4587 3.7401 NaN 1 Median 3.4587 3.7401 NaN 1 0 Median NaN NaN NaN 0 0 Median 76352000 6967000 69385000 76352000 6967000 69385000 0 0 0 2872 2136 2947 7536;7537 11758;11759 11759 1 EFNAEVHR PHSTKRFPGYDSESKEFNAEVHRKHIMGQN GYDSESKEFNAEVHRKHIMGQNVADYMRYL K E F H R K 1 1 1 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1000.4726 A2RUM7;P46777;Q59GX9;B3KTM6 A2RUM7 189 196 RPL5 60S ribosomal protein L5 yes no 2;3 1.3991E-114 265.41 4 4 0.94745 0.95038 21.704 8 Median 0.98569 1.132 3.6531 4 0 Median 0.90865 0.76534 4.922 4 0 Median 2233800000 1087800000 1146000000 2101600000 1018400000 1083200000 132220000 69425000 62799000 2873 653 2948 7538;7539;7540;7541;7542;7543;7544;7545 11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775 11761 16 EFNAEVHRK PHSTKRFPGYDSESKEFNAEVHRKHIMGQN YDSESKEFNAEVHRKHIMGQNVADYMRYLM K E F R K H 1 1 1 0 0 0 2 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 9 1 1128.5676 A2RUM7;P46777;Q59GX9;B3KTM6 A2RUM7 189 197 RPL5 60S ribosomal protein L5 yes no 2;3 3.0602E-08 166.09 5 2 1.0531 1.1221 13.773 5 Median 1.0318 1.1836 3.4907 3 0 Median 1.0739 0.91222 1.9402 2 0 Median 107510000 60704000 46803000 101350000 57972000 43374000 6161600 2732300 3429200 2874 653 2949 7546;7547;7548;7549;7550;7551;7552 11776;11777;11778;11779;11780;11781;11782;11783;11784 11776 9 EFNAFVLDK KGNIAQMYHAPGKKREFNAFVLDKTYFGPY APGKKREFNAFVLDKTYFGPYDETTCIDWT R E F D K T 1 0 1 1 0 0 1 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 9 0 1081.5444 Q15269;A0A0B4J2E5 Q15269 130 138 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.00018162 114.97 3 2 1.0661 1.0423 4.367 4 Median 0.92222 1.0792 0.11193 2 0 Median 1.239 1.0011 0.88241 2 0 Median 611630000 324350000 287280000 565100000 303870000 261240000 46529000 20487000 26041000 2875 1756 2950 7553;7554;7555;7556;7557 11785;11786;11787;11788;11789;11790;11791;11792 11789 8 EFNEDGALAVLQQFK VAHSDLDERAIEALKEFNEDGALAVLQQFK EFNEDGALAVLQQFKDSDLSHVQNKSAFLC K E F F K D 2 0 1 1 0 2 2 1 0 0 2 1 0 2 0 0 0 0 0 1 0 0 15 0 1707.8468 Q05CK9;Q59GL1;B2R8Z8;O60506;F6UXX1 Q05CK9 103 117 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 1.1441E-09 105.13 2 1 1.9306 1.9216 0.65259 2 Median 1.9306 1.9216 0.65259 2 0 Median NaN NaN NaN 0 0 Median 52413000 18631000 33782000 49471000 18631000 30840000 2941700 0 2941700 2876 864 2951 7558;7559;7560 11793;11794;11795 11794 2 EFNEEGALSVLQQFK VAYVDLDEGAIDALREFNEEGALSVLQQFK EFNEEGALSVLQQFKESDLSHVQNKSAFLC R E F F K E 1 0 1 0 0 2 3 1 0 0 2 1 0 2 0 1 0 0 0 1 0 0 15 0 1737.8574 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5 B2R7W4 70 84 HNRNPR;HNRPR;DKFZp686A13234 Heterogeneous nuclear ribonucleoprotein R yes no 2 0.00067637 52.391 2 1 1.9183 1.9661 10.297 2 Median 1.9183 1.9661 10.297 2 0 Median NaN NaN NaN 0 0 Median 26912000 8897000 18015000 25675000 8897000 16778000 1236400 0 1236400 2877 855 2952 7561;7562;7563 11796;11797;11798 11796 3 EFPITEAVGSDK RPSVKETLQKSGVRKEFPITEAVGSDKTNR VRKEFPITEAVGSDKTNRHPLECLPGLIQD K E F D K T 1 0 0 1 0 0 2 1 0 1 0 1 0 1 1 1 1 0 0 1 0 0 12 0 1291.6296 Q6P0N0;H0YJM1 Q6P0N0 851 862 MIS18BP1 Mis18-binding protein 1 yes no 2 0.0016389 70.977 1 2 1.3626 1.0636 19.959 3 Median 0.7368 0.76528 NaN 1 0 Median 1.3756 1.0802 2.1865 2 0 Median 20091000 8900000 11191000 11413000 5271800 6141000 8678300 3628300 5050100 2878 1849 2953 7564;7565;7566 11799;11800;11801 11800 3 EFPPGTPR VLEQLIVAHFPMQSREFPPGTPRFNNYVDC HFPMQSREFPPGTPRFNNYVDCMKKFLDAL R E F P R F 0 1 0 0 0 0 1 1 0 0 0 0 0 1 3 0 1 0 0 0 0 0 8 0 899.45012 P78527 P78527 1728 1735 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.051419 54.205 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2879 1665 2954 7567 11802 11802 1 EFPVSSGSQHR AAKPTPPKSQVTLTKEFPVSSGSQHRKKEA TLTKEFPVSSGSQHRKKEADSVYGEWVPVE K E F H R K 0 1 0 0 0 1 1 1 1 0 0 0 0 1 1 3 0 0 0 1 0 0 11 0 1229.5789 P18583;Q6ZRV7;J3QSZ5;B3KRA1;H7C1M2;H7C2G8 P18583 2174 2184 SON Protein SON yes no 2 0.015675 54.416 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5888600 0 5888600 5888600 0 5888600 0 0 0 2880 1499 2955 7568 11803 11803 1 EFQEELSR SARCSLEQKIKEKEKEFQEELSRQQRSFQT KIKEKEKEFQEELSRQQRSFQTLDQECIQM K E F S R Q 0 1 0 0 0 1 3 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 1036.4825 P49454 P49454 395 402 CENPF Centromere protein F yes yes 2 0.0088018 77.058 1 1.3126 1.2881 NaN 1 Median 1.3126 1.2881 NaN 1 0 Median NaN NaN NaN 0 0 Median 14056000 4551500 9504100 14056000 4551500 9504100 0 0 0 2881 1581 2956 7569 11804 11804 1 EFQLTEENTK CYAESIDDQLNTLLKEFQLTEENTKLRYLT NTLLKEFQLTEENTKLRYLTCSLIEDMAAA K E F T K L 0 0 1 0 0 1 3 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1237.5826 Q9NVV4;Q5T852 Q9NVV4 196 205 MTPAP Poly(A) RNA polymerase, mitochondrial yes no 2 3.8359E-11 120.15 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23134000 0 23134000 23134000 0 23134000 0 0 0 2882 2075 2957 7570;7571;7572;7573 11805;11806;11807;11808 11807 4 EFSANNPFK IPMSKMMTILGAKWREFSANNPFKGSAAAV LGAKWREFSANNPFKGSAAAVAAAAAAAAA R E F F K G 1 0 2 0 0 0 1 0 0 0 0 1 0 2 1 1 0 0 0 0 0 0 9 0 1052.4927 Q12873;H7C2H0 Q12873 195 203 CHD3 Chromodomain-helicase-DNA-binding protein 3 no no 2 0.0023541 81.119 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13761000 13761000 0 13761000 13761000 0 0 0 0 2883 1701 2958 7574 11809 11809 1 EFSGHQGQINDMAFSPDGR FSISVLDIETRKIVREFSGHQGQINDMAFS HQGQINDMAFSPDGRWLISAAMDCSIRTWD R E F G R W 1 1 1 2 0 2 1 3 1 1 0 0 1 2 1 2 0 0 0 0 0 0 19 0 2091.9069 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 561 579 WDR36 WD repeat-containing protein 36 yes no 3 3.1479E-06 70.555 3 1 1.3776 1.4457 18.178 4 Median 1.3241 1.4736 15.682 3 0 Median 1.4332 1.2219 NaN 1 0 Median 178750000 75114000 103640000 175940000 74162000 101780000 2807200 951700 1855500 2884 486 2959;2960 7575;7576;7577;7578 11810;11811;11812;11813;11814 11811 330 4 EFSIIEHTR NTLLSAPIHTQMQQKEFSIIEHTRERKHAN TQMQQKEFSIIEHTRERKHANDQTVIFSDE K E F T R E 0 1 0 0 0 0 2 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 9 0 1130.572 Q8NG31;E9PPJ1;Q05C46 Q8NG31 151 159 CASC5 Protein CASC5 no no 3 0.0057467 45.161 1 0.79959 0.80114 NaN 1 Median 0.79959 0.80114 NaN 1 0 Median NaN NaN NaN 0 0 Median 6806200 3193800 3612300 6806200 3193800 3612300 0 0 0 2885 1928;1685 2961 7579 11815 11815 1 EFSITDVVPYPISLR CALQCAILSPAFKVREFSITDVVPYPISLR EFSITDVVPYPISLRWNSPAEEGSSDCEVF R E F L R W 0 1 0 1 0 0 1 0 0 2 1 0 0 1 2 2 1 0 1 2 0 0 15 0 1734.9192 O14992;A0A087WTS8;A0A087WYC1;Q59GF8;V9HW33;B4DH02;P34932;B4DT47;B4DIZ3;B4DUS3;B4E354;B4E0H6 O14992 391 405 HS24/p52;HSPA4;HEL-S-5a Heat shock 70 kDa protein 4 yes no 2 4.0894E-05 86.014 2 1.7006 1.7022 8.3795 2 Median 1.7006 1.7022 8.3795 2 0 Median NaN NaN NaN 0 0 Median 13917000 5262200 8655200 13917000 5262200 8655200 0 0 0 2886 404 2962 7580;7581 11816;11817;11818 11817 3 EFSPFGSITSAK IKNLDDTIDDEKLRKEFSPFGSITSAKVML LRKEFSPFGSITSAKVMLEDGRSKGFGFVC K E F A K V 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 3 1 0 0 0 0 0 12 0 1269.6241 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;Q53GL4;H0YEU6;Q147Y3;Q3B867;Q59GZ7 B1ANR0 313 324 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.00020181 89.827 2 2 1.8765 1.7411 40.142 4 Median 2.2542 2.4583 0.85491 2 0 Median 1.5281 1.2268 1.5855 2 0 Median 93969000 28570000 65399000 85204000 25137000 60067000 8765200 3433300 5331900 2887 818 2963 7582;7583;7584;7585 11819;11820;11821;11822;11823 11820 5 EFSPFGTITSAK VKNLDDGIDDERLRKEFSPFGTITSAKVMM LRKEFSPFGTITSAKVMMEGGRSKGFGFVC K E F A K V 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 2 2 0 0 0 0 0 12 0 1283.6398 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;H0YAR2;H0YAP2;H0YB86 A0A087WTT1 288 299 PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 1 yes no 2 0.00091074 83.869 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23593000 0 23593000 23593000 0 23593000 0 0 0 2888 273 2964 7586 11824 11824 1 EFSTNNPFK IAVSKMMMVLGAKWREFSTNNPFKGSSGAS LGAKWREFSTNNPFKGSSGASVAAAAAAAV R E F F K G 0 0 2 0 0 0 1 0 0 0 0 1 0 2 1 1 1 0 0 0 0 0 9 0 1082.5033 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;F5H6N4;Q05CG6 F5GWX5 204 212 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 6.7674E-08 143.11 2 2 1.1167 1.0658 34.447 4 Median 0.70692 0.79404 0.72886 2 0 Median 1.7923 1.4415 1.8036 2 0 Median 187390000 109780000 77612000 169460000 103330000 66132000 17925000 6444700 11480000 2889 515 2965 7587;7588;7589;7590 11825;11826;11827;11828;11829;11830;11831;11832;11833 11828 9 EFTDLLAQDR VTRKNMLLATKQICKEFTDLLAQDRSPLGN KQICKEFTDLLAQDRSPLGNSRPNPILEPG K E F D R S 1 1 0 2 0 1 1 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1206.5881 Q96SH1;P05549;A8K557;Q92481;B2R9E2 Q96SH1 349 358 TFAP2A;TFAP2B Transcription factor AP-2-alpha;Transcription factor AP-2-beta yes no 2 0.0037552 63.076 1 2 1.2011 1.0057 34.541 3 Median 0.57314 0.56769 NaN 1 0 Median 1.2019 1.031 3.5155 2 0 Median 21733000 12102000 9630900 15574000 9128300 6445900 6159100 2974100 3185000 2890 1448 2966 7591;7592;7593 11834;11835;11836 11834 3 EFTEAVEAK LILDDVSLTHLTFGKEFTEAVEAKQVAQQE HLTFGKEFTEAVEAKQVAQQEAERARFVVE K E F A K Q 2 0 0 0 0 0 3 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 9 0 1022.492 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;A8K9G2 Q6PUJ7 178 186 HEL-S-54e;PHB Prohibitin yes no 2 0.00033904 101.54 2 2 2.1318 2.052 14.397 4 Median 1.5884 1.822 3.8672 2 0 Median 2.9164 2.3214 4.4939 2 0 Median 403130000 157290000 245840000 370610000 149080000 221530000 32521000 8212200 24309000 2891 730 2967 7594;7595;7596;7597 11837;11838;11839;11840;11841;11842 11838 6 EFTNFLDTIIR EECIWYKVNNYEHGKEFTNFLDTIIRAECF EHGKEFTNFLDTIIRAECFLQEGFYSCEAF K E F I R A 0 1 1 1 0 0 1 0 0 2 1 0 0 2 0 0 2 0 0 0 0 0 11 0 1367.7085 B4DZL4;A0A024RCG4;Q92674 B4DZL4 413 423 FSHPRH1;CENPI Centromere protein I yes no 2 2.7331E-05 102.07 2 0.68146 0.69065 1.1964 2 Median 0.68146 0.69065 1.1964 2 0 Median NaN NaN NaN 0 0 Median 21307000 12488000 8819100 21307000 12488000 8819100 0 0 0 2892 360 2968 7598;7599 11843;11844;11845;11846 11843 4 EFTNHWWNELFNK TLKQDTHGVGHDPAKEFTNHWWNELFNKTA AKEFTNHWWNELFNKTAANLVVETGQDGVQ K E F N K T 0 0 3 0 0 0 2 0 1 0 1 1 0 2 0 0 1 2 0 0 0 0 13 0 1763.8056 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 59 71 GPATCH4 G patch domain-containing protein 4 yes no 3 0.050594 18.596 1 1.9096 1.4937 NaN 1 Median NaN NaN NaN 0 0 Median 1.9096 1.4937 NaN 1 0 Median 3229400 1206500 2022900 0 0 0 3229400 1206500 2022900 2893 1820 2969 7600 11847 11847 1 EFTNVYIK KSRKEREAELGARAKEFTNVYIKNFGEDMD ELGARAKEFTNVYIKNFGEDMDDERLKDLF K E F I K N 0 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 1 0 0 8 0 1012.5229 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;H0YAR2;H0YBN4;B1ANR0;Q6IQ30;Q13310;H0Y5F5;H0YCC8 A0A087WTT1 164 171 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 0.011407 69.998 1 2.499 2.7096 NaN 1 Median 2.499 2.7096 NaN 1 0 Median NaN NaN NaN 0 0 Median 44743000 14859000 29883000 44743000 14859000 29883000 0 0 0 2894 273;818 2970 7601 11848;11849 11849 2 EFTPYDYSQSDFK LKISKKPKDPEPPEKEFTPYDYSQSDFKAF EKEFTPYDYSQSDFKAFAGNSKSKVSSQFD K E F F K A 0 0 0 2 0 1 1 0 0 0 0 1 0 2 1 2 1 0 2 0 0 0 13 0 1625.6886 Q01780 Q01780 814 826 EXOSC10 Exosome component 10 yes yes 2 0.00014459 87.568 2 1 0.88298 0.8638 6.0197 3 Median 0.88033 0.89417 4.8868 2 0 Median 1.0243 0.821 NaN 1 0 Median 51830000 27146000 24684000 43473000 23433000 20040000 8356900 3712900 4643900 2895 1676 2971 7602;7603;7604 11850;11851;11852;11853;11854 11852 5 EFTVNIMDTCER FMELTFNQAAKGVNKEFTVNIMDTCERCNG VNKEFTVNIMDTCERCNGKGNEPGTKVQHC K E F E R C 0 1 1 1 1 0 2 0 0 1 0 0 1 1 0 0 2 0 0 1 0 0 12 0 1513.6541 Q59E88;Q53G26;Q96EY1;B3KM81;I3L1T6 Q59E88 225 236 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 0.00057234 73.499 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8916700 0 8916700 8916700 0 8916700 0 0 0 2896 1786 2972 7605 11855;11856 11855 1652 2 EFVDYYYSTNR VTDVTKQKDCKMKLKEFVDYYYSTNRKRVL MKLKEFVDYYYSTNRKRVLNVTNLEFSDTR K E F N R K 0 1 1 1 0 0 1 0 0 0 0 0 0 1 0 1 1 0 3 1 0 0 11 0 1455.6307 O75151 O75151 176 186 PHF2 Lysine-specific demethylase PHF2 yes yes 2 0.05005 34.692 2 1.7576 1.5396 4.8636 2 Median NaN NaN NaN 0 0 Median 1.7576 1.5396 4.8636 2 0 Median 3071100 1321600 1749500 0 0 0 3071100 1321600 1749500 2897 1400 2973 7606;7607 11857;11858 11858 2 EFVEAVLELR LKDDLGNTLEKKGGKEFVEAVLELRKKNGP KKGGKEFVEAVLELRKKNGPLEVAGAAVSA K E F L R K 1 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 0 0 0 2 0 0 10 0 1203.6499 O75367;Q59FH0;B4DJC3 O75367 240 249 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 2.8407E-12 147.2 2 2 1.0947 1.101 13.884 4 Median 1.054 1.2415 1.4183 2 0 Median 1.1229 0.9769 1.3569 2 0 Median 1841800000 881480000 960340000 1553500000 745600000 807910000 288310000 135880000 152430000 2898 1401 2974 7608;7609;7610;7611 11859;11860;11861;11862;11863;11864;11865;11866;11867;11868;11869;11870;11871;11872 11871 14 EFVEAVLELRK LKDDLGNTLEKKGGKEFVEAVLELRKKNGP KGGKEFVEAVLELRKKNGPLEVAGAAVSAG K E F R K K 1 1 0 0 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 2 0 0 11 1 1331.7449 O75367;Q59FH0;B4DJC3 O75367 240 250 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.00041651 90.696 2 1.3304 1.1285 3.4321 2 Median NaN NaN NaN 0 0 Median 1.3304 1.1285 3.4321 2 0 Median 18357000 7714300 10642000 0 0 0 18357000 7714300 10642000 2899 1401 2975 7612;7613 11873;11874;11875;11876 11873 4 EFVLPFLR GIPVAALLEPDEVLKEFVLPFLRLDVEEVD EPDEVLKEFVLPFLRLDVEEVDLSLRIFIQ K E F L R L 0 1 0 0 0 0 1 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 8 0 1019.5804 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678 Q9HBB9 643 650 GEMIN4 Gem-associated protein 4 yes no 2 0.0067093 86.086 2 2.4512 2.468 10.791 2 Median 2.4512 2.468 10.791 2 0 Median NaN NaN NaN 0 0 Median 15120000 4887500 10232000 15120000 4887500 10232000 0 0 0 2900 1940 2976 7614;7615 11877;11878 11877 2 EFVSASFDK HVSAVLDVDYSPTGKEFVSASFDKSIRIFP YSPTGKEFVSASFDKSIRIFPVDKSRSREV K E F D K S 1 0 0 1 0 0 1 0 0 0 0 1 0 2 0 2 0 0 0 1 0 0 9 0 1028.4815 A0A087WT20;Q9NV06;A0A087X1F8 A0A087WT20 448 456 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.0012677 87.639 2 1 1.0594 1.1511 4.0211 3 Median 1.0189 1.1178 4.155 2 0 Median 1.4377 1.1722 NaN 1 0 Median 99973000 46517000 53455000 93454000 43914000 49540000 6518700 2603200 3915500 2901 402 2977 7616;7617;7618 11879;11880;11881;11882;11883 11879 5 EFVSSDESSSGENK SKSSSRQLSESFKSKEFVSSDESSSGENKS KEFVSSDESSSGENKSKKKRRRSEDSEEEE K E F N K S 0 0 1 1 0 0 3 1 0 0 0 1 0 1 0 5 0 0 0 1 0 0 14 0 1500.6216 A0A024R4Z6;Q08945 A0A024R4Z6 664 677 SSRP1 FACT complex subunit SSRP1 yes no 2 1.4416E-09 108.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4526700 0 4526700 4526700 0 4526700 0 0 0 2902 167 2978 7619 11884 11884 1 EFYGENIK SLQNQIVWKIKETVKEFYGENIKESPDYER KIKETVKEFYGENIKESPDYERIINLRHFK K E F I K E 0 0 1 0 0 0 2 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 0 998.47091 J3QRD1;Q59H65;P51648;Q68D64;J3QS00;I3L1M4 J3QRD1 267 274 ALDH3A2;DKFZp686E23276 Fatty aldehyde dehydrogenase yes no 2 0.023396 56.547 1 1.1975 1.2528 NaN 1 Median 1.1975 1.2528 NaN 1 0 Median NaN NaN NaN 0 0 Median 11989000 4886500 7102200 11989000 4886500 7102200 0 0 0 2903 1338 2979 7620 11885 11885 1 EGAFSNFPISEETIK ESNSEIEQEIPVEQKEGAFSNFPISEETIK EGAFSNFPISEETIKLLKGRGVTFLFPIQA K E G I K L 1 0 1 0 0 0 3 1 0 2 0 1 0 2 1 2 1 0 0 0 0 0 15 0 1667.8043 Q9NR30;B4DW97;A0A087WVC1;Q9BQ39;B4DED6;K0J110;Q53FI9 Q9NR30 185 199 DDX21;DDX50;mcdrh Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 2 3.5639E-10 116.03 2 2 1.1944 1.1906 12.684 4 Median 1.1473 1.3336 1.4592 2 0 Median 1.2386 1.0711 0.38833 2 0 Median 785970000 362820000 423160000 487320000 228800000 258520000 298660000 134020000 164640000 2904 2065;416 2980 7621;7622;7623;7624 11886;11887;11888;11889;11890;11891;11892;11893 11886 8 EGATVYATGTHAQVEDGR ______________________________ TVYATGTHAQVEDGRLMEQLLSSVGFCTEV R E G G R L 3 1 0 1 0 1 2 3 1 0 0 0 0 0 0 0 3 0 1 2 0 0 18 0 1860.8602 Q2TU78;E7D7X9;A0A024R8U9;P32322;J3QKT4;E2QRB3;E7D7Y0;A0A1B2JLU7;B7Z8T1;J3KQ22;J3QL24;J3QR88;J3QLK9;J3QL23;J3QL32 Q2TU78 10 27 PIG45;PYCR1 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 2;3 1.0253E-05 67.997 4 1 0.64204 0.64964 52.966 3 Median 0.66767 0.66597 3.5102 2 0 Median 0.30168 0.26636 NaN 1 0 Median 36320000 22540000 13780000 32653000 19966000 12688000 3666600 2574600 1092000 2905 259 2981 7625;7626;7627;7628;7629 11894;11895;11896;11897;11898;11899 11896 6 EGDAHPLGALPVGTLINNVESEPGR ILNSNHIGRMAVAAREGDAHPLGALPVGTL PVGTLINNVESEPGRGAQYIRAAGAGNVRS R E G G R G 2 1 2 1 0 0 3 4 1 1 3 0 0 0 3 1 1 0 0 2 0 0 25 0 2541.2823 C9IY40;Q5T653;A0A024RD44 C9IY40 178 202 MRPL2 39S ribosomal protein L2, mitochondrial yes no 3 9.8761E-07 47.728 1 2 1.0056 0.98666 14.768 3 Median 0.99941 0.98666 NaN 1 0 Median 1.1687 0.97453 20.861 2 0 Median 24732000 11158000 13574000 14922000 6708000 8213900 9809600 4449600 5359900 2906 1125 2982 7630;7631;7632 11900;11901;11902;11903 11900 4 EGDDYEVIPN QSCTVEVHFQKIIDKEGDDYEVIPN_____ KIIDKEGDDYEVIPN_______________ K E G P N - 0 0 1 2 0 0 2 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 10 0 1149.4826 C9JJ64 C9JJ64 171 180 SMC4 yes yes 1 5.4937E-05 102.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3754800 0 0 3754800 0 0 0 0 0 2907 1136 2983 7633 11904 11904 1 EGDDYEVIPNSNFYVSR QSCTVEVHFQKIIDKEGDDYEVIPNSNFYV DDYEVIPNSNFYVSRTACRDNTSVYHISGK K E G S R T 0 1 2 2 0 0 2 1 0 1 0 0 0 1 1 2 0 0 2 2 0 0 17 0 2002.8909 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 171 187 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 6.8066E-08 99.5 2 2 1.1709 1.1818 25.674 4 Median 0.82024 0.95047 1.3943 2 0 Median 1.705 1.4813 2.543 2 0 Median 629510000 309030000 320480000 406690000 226320000 180370000 222820000 82710000 140110000 2908 2070 2984 7634;7635;7636;7637 11905;11906;11907;11908;11909;11910;11911;11912;11913;11914 11911 10 EGDETPNSIPADIVFIIK IKKGWKEGTKITFPREGDETPNSIPADIVF ETPNSIPADIVFIIKDKDHPKFKRDGSNII R E G I K D 1 0 1 2 0 0 2 1 0 4 0 1 0 1 2 1 1 0 0 1 0 0 18 0 1957.0044 B4DNN2;Q59E89;Q9UDY4 B4DNN2 104 121 DNAJB4 DnaJ homolog subfamily B member 4 yes no 2 2.0334E-09 88.163 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11944000 0 11944000 11944000 0 11944000 0 0 0 2909 1013 2985 7638 11915 11915 1 EGDFNNLTAAAFHK GKVKYSRLAKYFFNKEGDFNNLTAAAFHKK KEGDFNNLTAAAFHKKSHLLVTGFASGIFH K E G H K K 3 0 2 1 0 0 1 1 1 0 1 1 0 2 0 0 1 0 0 0 0 0 14 0 1533.7212 Q15269;A0A0B4J2E5 Q15269 285 298 PWP2 Periodic tryptophan protein 2 homolog yes no 2;3 0.001402 66.758 3 2 1.0062 1.0187 6.0555 5 Median 0.98813 1.0413 4.3134 3 0 Median 1.2025 0.97155 5.2808 2 0 Median 129990000 68268000 61718000 114840000 61124000 53717000 15145000 7144300 8001000 2910 1756 2986 7639;7640;7641;7642;7643 11916;11917;11918;11919;11920;11921;11922 11919 7 EGDGVYYNELETR KASKGYEENYFFIFREGDGVYYNELETRVR FREGDGVYYNELETRVRLSKRRAKAGVQSG R E G T R V 0 1 1 1 0 0 3 2 0 0 1 0 0 0 0 0 1 0 2 1 0 0 13 0 1543.6791 A0A024R0H6;Q8N7H5 A0A024R0H6 317 329 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.00012284 77.64 2 2 1.7058 1.6634 7.672 4 Median 1.62 1.7125 6.6995 2 0 Median 1.8681 1.5915 8.8275 2 0 Median 83105000 30331000 52774000 71926000 26144000 45782000 11179000 4187100 6991600 2911 46 2987 7644;7645;7646;7647 11923;11924;11925;11926;11927;11928;11929;11930;11931 11928 9 EGDLIAAQAR VREEFKELKARNTKKEGDLIAAQARLKDLE RNTKKEGDLIAAQARLKDLEALLNSKEAAL K E G A R L 3 1 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1042.5407 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 124 133 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.00017611 94.85 2 2 1.3022 1.2516 14.027 4 Median 1.2186 1.4239 3.573 2 0 Median 1.3726 1.12 1.0369 2 0 Median 644140000 284510000 359630000 615740000 272220000 343510000 28406000 12284000 16122000 2912 1440 2988 7648;7649;7650;7651 11932;11933;11934;11935;11936;11937;11938;11939 11934 8 EGDPLVFATVGSNR HNQPLFGVQFNWHSKEGDPLVFATVGSNRV KEGDPLVFATVGSNRVTLYECHSQGEIRLL K E G N R V 1 1 1 1 0 0 1 2 0 0 1 0 0 1 1 1 1 0 0 2 0 0 14 0 1460.726 O75530;B4DVW7;E9PJK2;B4DFK0 O75530 107 120 EED Polycomb protein EED yes no 2 5.0936E-05 92.943 3 2 1.7418 1.4319 4.9712 2 Median NaN NaN NaN 0 0 Median 1.7418 1.4319 4.9712 2 0 Median 78789000 58851000 19938000 47357000 47357000 0 31431000 11494000 19938000 2913 1407 2989 7652;7653;7654;7655;7656 11940;11941;11942;11943;11944;11945;11946 11944 7 EGDQTSNNIPADIVFVLK VKKGWKEGTKITFPKEGDQTSNNIPADIVF QTSNNIPADIVFVLKDKPHNIFKRDGSDVI K E G L K D 1 0 2 2 0 1 1 1 0 2 1 1 0 1 1 1 1 0 0 2 0 0 18 0 1958.9949 Q6FI51;Q6FHS4;P25685;M0R080 Q6FI51 223 240 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 0.00076618 41.092 2 0.90871 0.91871 12.27 2 Median 0.90871 0.91871 12.27 2 0 Median NaN NaN NaN 0 0 Median 27148000 11626000 15522000 27148000 11626000 15522000 0 0 0 2914 1517 2990 7657;7658 11947;11948 11948 2 EGDREAIVAALLTR APFLRQEFIRIRPNREGDREAIVAALLTRT REGDREAIVAALLTRTFTDHVMLFTQTKKQ R E G T R T 3 2 0 1 0 0 2 1 0 1 2 0 0 0 0 0 1 0 0 1 0 0 14 1 1512.826 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 416 429 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 3 0.0016105 35.091 2 1.0749 0.93985 1.8997 2 Median NaN NaN NaN 0 0 Median 1.0749 0.93985 1.8997 2 0 Median 15767000 7282800 8483800 0 0 0 15767000 7282800 8483800 2915 899;1099 2991 7659;7660 11949;11950;11951 11951 3 EGDVEEPTDDSLPTTGDAGGREPMEEK SSKQVVKQGLQERSKEGDVEEPTDDSLPTT PTTGDAGGREPMEEKLLEIQGKIEAVEMHL K E G E K L 1 1 0 4 0 0 6 4 0 0 1 1 1 0 3 1 3 0 0 1 0 0 27 1 2860.2193 Q9UKN8 Q9UKN8 642 668 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 3 6.4182E-16 64.488 2 1.0755 1.1973 3.1476 2 Median 1.0755 1.1973 3.1476 2 0 Median NaN NaN NaN 0 0 Median 34895000 15221000 19674000 34895000 15221000 19674000 0 0 0 2916 2107 2992 7661;7662 11952;11953;11954 11953 1937 3 EGDVLTLLESER DTSRSIIRNVKGPVREGDVLTLLESEREAR PVREGDVLTLLESEREARRLR_________ R E G E R E 0 1 0 1 0 0 3 1 0 0 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1359.6882 B2R4R9;P62857 B2R4R9 52 63 RPS28 40S ribosomal protein S28 yes no 2 3.1955E-38 185.96 2 2 1.2286 1.3973 12.848 4 Linear 1.17 1.3707 3.9704 2 0 Median 1.2746 1.1021 1.9625 2 0 Median 801650000 369340000 432310000 716120000 331820000 384300000 85525000 37519000 48006000 2917 829 2993 7663;7664;7665;7666 11955;11956;11957;11958;11959;11960;11961;11962;11963;11964 11955 10 EGDVLTPEQAR KRGVVTLLSDYEVCKEGDVLTPEQARVLKL EVCKEGDVLTPEQARVLKLFGYEMAEFKVT K E G A R V 1 1 0 1 0 1 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1213.5939 A0A024RAE1;Q9UKD2 A0A024RAE1 178 188 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 5.164E-10 129.85 2 2 1.052 0.95617 25.505 4 Linear 1.0454 1.1951 1.712 2 0 Median 0.91783 0.76867 1.038 2 0 Median 318800000 153300000 165500000 280030000 133130000 146900000 38766000 20166000 18600000 2918 302 2994 7667;7668;7669;7670 11965;11966;11967;11968;11969;11970;11971;11972 11966 8 EGDYVPPEK GVQLPPHLSPFVTEKEGDYVPPEKLKLLAL PFVTEKEGDYVPPEKLKLLALQRGEDPGNL K E G E K L 0 0 0 1 0 0 2 1 0 0 0 1 0 0 2 0 0 0 1 1 0 0 9 0 1032.4764 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;Q6ZUE0;H7C267 B5MCF9 414 422 PES1 Pescadillo homolog yes no 2 0.016418 61.691 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26674000 0 26674000 26674000 0 26674000 0 0 0 2919 886 2995 7671;7672 11973;11974 11974 2 EGEDSSVIHYDDK ELFKDEATDGGGDNKEGEDSSVIHYDDKAI NKEGEDSSVIHYDDKAIERLLDRNQDETED K E G D K A 0 0 0 3 0 0 2 1 1 1 0 1 0 0 0 2 0 0 1 1 0 0 13 0 1492.6318 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1233 1245 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 2.0572E-23 151.79 4 4 1.163 1.0769 35.279 8 Median 0.72864 0.78702 1.7043 4 0 Median 1.8758 1.5025 6.0118 4 0 Median 206660000 109400000 97264000 166260000 95235000 71023000 40405000 14164000 26241000 2920 515 2996 7673;7674;7675;7676;7677;7678;7679;7680 11975;11976;11977;11978;11979;11980;11981;11982;11983;11984;11985;11986 11979 12 EGEELVMDEEAYVLYHR GPAQVYLPGRGPPLREGEELVMDEEAYVLY EELVMDEEAYVLYHRAQTGAPCLSFDIVRD R E G H R A 1 1 0 1 0 0 5 1 1 0 2 0 1 0 0 0 0 0 2 2 0 0 17 0 2080.9412 Q8NCK5;Q9BQ67;Q8TCJ8;B2RDP6 Q8NCK5 43 59 GRWD1;DKFZp564C172 Glutamate-rich WD repeat-containing protein 1 yes no 3 1.286E-05 77.562 3 0.89659 0.91587 NaN 1 Median 0.89659 0.91587 NaN 1 0 Median NaN NaN NaN 0 0 Median 28972000 10121000 18851000 28972000 10121000 18851000 0 0 0 2921 1922 2997 7681;7682;7683 11987;11988;11989 11987 1752 3 EGEEPTVYSDEEEPK SQFTFKYHHVGKLLKEGEEPTVYSDEEEPK EGEEPTVYSDEEEPKDESARKND_______ K E G P K D 0 0 0 1 0 0 6 1 0 0 0 1 0 0 2 1 1 0 1 1 0 0 15 0 1736.7265 Q6IB11;O00264 Q6IB11 173 187 PGRMC1 Membrane-associated progesterone receptor component 1 yes no 2 0.00050047 71.555 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6243300 0 6243300 6243300 0 6243300 0 0 0 2922 1361 2998 7684;7685 11990;11991 11991 2 EGEFVAQFK AKHELLQPFNVLYEKEGEFVAQFKFTVLLM NVLYEKEGEFVAQFKFTVLLMPNGPMRITS K E G F K F 1 0 0 0 0 1 2 1 0 0 0 1 0 2 0 0 0 0 0 1 0 0 9 0 1053.5131 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08 A8K6Y1 312 320 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.0076027 69.905 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6901800 0 6901800 6901800 0 6901800 0 0 0 2923 328 2999 7686 11992 11992 1 EGELTVAQGR LRAELDEVNKSAKKREGELTVAQGRVKDLE SAKKREGELTVAQGRVKDLESLFHRSEVEL R E G G R V 1 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1058.5356 Q03252 Q03252 139 148 LMNB2 Lamin-B2 yes yes 2 7.2801E-05 96.948 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15265000 0 15265000 15265000 0 15265000 0 0 0 2924 1682 3000 7687;7688;7689 11993;11994;11995 11994 3 EGENPPDGFMAPK EFDFISGTRMRKLAREGENPPDGFMAPKAW AREGENPPDGFMAPKAWKVLTDYYRSLEKN R E G P K A 1 0 1 1 0 0 2 2 0 0 0 1 1 1 3 0 0 0 0 0 0 0 13 0 1387.6078 Q5TB52;B4DWB5;O95340;Q9UIR2 Q5TB52 587 599 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 5.0733E-05 90.142 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14574000 0 14574000 14574000 0 14574000 0 0 0 2925 1044 3001 7690 11996 11996 817 1 EGETVEPYK HLGVVEAYSGLTKKKEGETVEPYKVNLSQD GLTKKKEGETVEPYKVNLSQDLEHQLQNII K E G Y K V 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 9 0 1050.487 Q08211;Q58F26;Q6PJK6 Q08211 267 275 DHX9 ATP-dependent RNA helicase A yes no 2 6.4488E-06 131.06 2 1.2634 1.4281 1.1758 2 Median 1.2634 1.4281 1.1758 2 0 Median NaN NaN NaN 0 0 Median 218290000 99189000 119100000 218290000 99189000 119100000 0 0 0 2926 1691 3002 7691;7692 11997;11998;11999;12000 11999 4 EGFLDTLVVLHR ADPATLTRPVHDAAREGFLDTLVVLHRAGA AAREGFLDTLVVLHRAGARLDVRDAWGRLP R E G H R A 0 1 0 1 0 0 1 1 1 0 3 0 0 1 0 0 1 0 0 2 0 0 12 0 1397.7667 J3QRG6;K7PML8;P42771;K7ES20;L8E941;K7ENC6;D1LYX3;K7PPU3;P42772 J3QRG6 88 99 CDKN2A;CDKN2B Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B no no 2;3 2.492E-05 101.11 4 1.8637 1.8975 4.1281 4 Median 1.8637 1.8975 4.1281 4 0 Median NaN NaN NaN 0 0 Median 48387000 15938000 32449000 48387000 15938000 32449000 0 0 0 2927 1339 3003 7693;7694;7695;7696 12001;12002;12003;12004;12005;12006;12007;12008 12003 8 EGFPITALR GQKVALKKVLMENEKEGFPITALREIKILQ LMENEKEGFPITALREIKILQLLKHENVVN K E G L R E 1 1 0 0 0 0 1 1 0 1 1 0 0 1 1 0 1 0 0 0 0 0 9 0 1002.5498 B5BU53;B2R9L6;A0A024R880;P50750;X6RE90 B5BU53 57 65 CDK9 Cyclin-dependent kinase 9 yes no 2 0.012314 58.23 3 1.8752 1.9417 62.376 2 Median 1.8752 1.9417 62.376 2 0 Median NaN NaN NaN 0 0 Median 41995000 15974000 26021000 41995000 15974000 26021000 0 0 0 2928 243 3004 7697;7698;7699 12009;12010;12011 12009 3 EGGFLLLHTLLR GDPASALSNMVAALREGGFLLLHTLLRGHP ALREGGFLLLHTLLRGHPLGDIVAFLTSTE R E G L R G 0 1 0 0 0 0 1 2 1 0 5 0 0 1 0 0 1 0 0 0 0 0 12 0 1367.7925 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1336 1347 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0024057 60.518 1 1.4157 1.4387 NaN 1 Median 1.4157 1.4387 NaN 1 0 Median NaN NaN NaN 0 0 Median 7434100 3127400 4306700 7434100 3127400 4306700 0 0 0 2929 587 3005 7700 12012;12013 12012 2 EGGGDEPLNFLDPK EQRKLARQRSRAWLKEGGGDEPLNFLDPKV KEGGGDEPLNFLDPKVAQRVLATQPGPGRG K E G P K V 0 0 1 2 0 0 2 3 0 0 2 1 0 1 2 0 0 0 0 0 0 0 14 0 1486.694 B3KMR5;Q5JTH9;B3KY97;B3KPQ2;A0A087X0G0 B3KMR5 1111 1124 RRP12 RRP12-like protein yes no 2 9.3416E-10 111.86 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42520000 15809000 26711000 35941000 15809000 20132000 6579300 0 6579300 2930 907 3006 7701;7702;7703 12014;12015;12016;12017;12018 12014 5 EGGVTFTWVEK KPPGTFLLRFSESSKEGGVTFTWVEKDISG ESSKEGGVTFTWVEKDISGKTQIQSVEPYT K E G E K D 0 0 0 0 0 0 2 2 0 0 0 1 0 1 0 0 2 1 0 2 0 0 11 0 1251.6136 G8JLH9;B4DNP0;B7ZA24;B4DVR6;B5BTZ6;P40763 G8JLH9 518 528 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 2 0.0011644 85.29 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8215100 0 8215100 8215100 0 8215100 0 0 0 2931 1015 3007 7704 12019 12019 1 EGHLSPDIVAEQK PANFQYPAESVLAYKEGHLSPDIVAEQKKL YKEGHLSPDIVAEQKKLEAADLVIFQSGIL K E G Q K K 1 0 0 1 0 1 2 1 1 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1421.7151 B4DLR8;Q3B792;H3BRK3;P15559;H3BNV2 B4DLR8 78 90 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2 1.0724E-29 154.15 2 4.7989 5.1589 NaN 1 Median 4.7989 5.1589 NaN 1 0 Median NaN NaN NaN 0 0 Median 45768000 4465200 41303000 45768000 4465200 41303000 0 0 0 2932 1000 3008 7705;7706 12020;12021;12022 12020 3 EGHQVALLSGEMMVEQR HTRKTASWLAAELSKEGHQVALLSGEMMVE HQVALLSGEMMVEQRAAVIERFREGKEKVL K E G Q R A 1 1 0 0 0 2 3 2 1 0 2 0 2 0 0 1 0 0 0 2 0 0 17 0 1912.9135 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;Q59FQ9;Q68DY7;B4DL69;Q69YM2;A0A024QZ90;I3L352;B4DS24 I3L0H8 324 340 DDX19A;DDX19B;DKFZp686C21137;hCG_1998531;DKFZp762C1313 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 3 1.5572E-05 75.682 2 4.5742 4.6621 NaN 1 Median 4.5742 4.6621 NaN 1 0 Median NaN NaN NaN 0 0 Median 43315000 4519700 38795000 43315000 4519700 38795000 0 0 0 2933 593 3009 7707;7708 12023;12024 12024 450;451 2 EGIESGDPGTDDGR LKAQNKIAESIPYLKEGIESGDPGTDDGRF KEGIESGDPGTDDGRFYFHLGDAMQRVGNK K E G G R F 0 1 0 3 0 0 2 4 0 1 0 0 0 0 1 1 1 0 0 0 0 0 14 0 1403.5801 Q12797 Q12797 513 526 ASPH Aspartyl/asparaginyl beta-hydroxylase yes yes 2 0.00019766 69.672 1 0.48964 0.4958 NaN 1 Median 0.48964 0.4958 NaN 1 0 Median NaN NaN NaN 0 0 Median 5482500 3447000 2035500 5482500 3447000 2035500 0 0 0 2934 1700 3010 7709 12025 12025 1 EGINIFLDGYVPTENLR VPSAYGVVTMPFSVREGINIFLDGYVPTEN INIFLDGYVPTENLRFRDASLVFKVAETAN R E G L R F 0 1 2 1 0 0 2 2 0 2 2 0 0 1 1 0 1 0 1 1 0 0 17 0 1948.9894 P61221;D6R9I9 P61221 307 323 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 0.023343 40.066 1 1.6562 1.6711 NaN 1 Median 1.6562 1.6711 NaN 1 0 Median NaN NaN NaN 0 0 Median 10375000 3285500 7089100 10375000 3285500 7089100 0 0 0 2935 1628 3011 7710 12026 12026 0 EGININR SERQKKTKAEGDRLKEGININRGLLCLGNV KAEGDRLKEGININRGLLCLGNVISALGDD K E G N R G 0 1 2 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 814.42972 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 262 268 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.032919 64.776 2 0.86347 0.97368 3.0198 2 Median 0.86347 0.97368 3.0198 2 0 Median NaN NaN NaN 0 0 Median 165790000 86439000 79352000 165790000 86439000 79352000 0 0 0 2936 1803 3012 7711;7712 12027;12028 12027 2 EGIPALDNFLDKL PSQVVAETRKRKGLKEGIPALDNFLDKL__ LKEGIPALDNFLDKL_______________ K E G K L - 1 0 1 2 0 0 1 1 0 1 3 1 0 1 1 0 0 0 0 0 0 0 13 1 1443.7609 P13639;Q8TA90;B4DPU3 P13639 846 858 EEF2 Elongation factor 2 yes no 2 2.8646E-06 110.54 1 1.6338 1.8687 NaN 1 Median 1.6338 1.8687 NaN 1 0 Median NaN NaN NaN 0 0 Median 185240000 42851000 142390000 185240000 42851000 142390000 0 0 0 2937 1478 3013 7713 12029 12029 1 EGIPPDQQR PSDTIENVKAKIQDKEGIPPDQQRLIFAGK AKIQDKEGIPPDQQRLIFAGKQLEDGRTLS K E G Q R L 0 1 0 1 0 2 1 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 9 0 1038.5094 Q5RKT7;B2RDW1;P62979;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;M0R1V7;Q49A90;Q9UFQ0;Q96H31;Q66K58;Q59EM9;J3QSA3;F5GZ39;M0R1M6;M0R2S1 Q5RKT7 34 42 RPS27A;HEL112;UBB;UBC;UBA52;UbC;DKFZp434K0435 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2 0.0018358 80.229 1 0.77825 0.87207 NaN 1 Median 0.77825 0.87207 NaN 1 0 Median NaN NaN NaN 0 0 Median 90482000 52443000 38039000 90482000 52443000 38039000 0 0 0 2938 891 3014 7714 12030;12031;12032;12033;12034;12035 12033 6 EGIQWEAK EKAPEGKWSCPHCEKEGIQWEAKEDNSEGE SCPHCEKEGIQWEAKEDNSEGEEILEEVGG K E G A K E 1 0 0 0 0 1 2 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 8 0 959.47125 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 410 417 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0088018 77.058 2 1 0.9011 0.97252 26.958 3 Median 0.87085 0.94267 4.4084 2 0 Median 1.8964 1.4989 NaN 1 0 Median 81577000 42784000 38793000 76412000 41096000 35316000 5165200 1687900 3477300 2939 515 3015 7715;7716;7717 12036;12037;12038;12039;12040;12041 12039 6 EGIVQTEQIR RLDKERLAARLEGHKEGIVQTEQIRSLSEA LEGHKEGIVQTEQIRSLSEAMSVEKIAAIK K E G I R S 0 1 0 0 0 2 2 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1171.6197 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 162 171 CDC73 Parafibromin yes no 2 1.9962E-10 137.14 2 1 2.2719 2.5222 11.131 3 Plateau 2.2118 2.4924 6.4925 2 0 Median 2.4911 2.091 NaN 1 0 Median 140790000 45672000 95115000 136570000 44438000 92127000 4221700 1234200 2987500 2940 1851 3016 7718;7719;7720 12042;12043;12044;12045;12046;12047 12044 6 EGKEEAEETNVLPK GLSEEDDSLVDVYYREGKEEAEETNVLPKE REGKEEAEETNVLPKEKQTKPAEAPRLQLS R E G P K E 1 0 1 0 0 0 5 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 14 1 1571.7679 Q14690;B4DH82 Q14690 1506 1519 PDCD11 Protein RRP5 homolog yes no 2;3 1.6326E-20 145.31 2 3 1.4512 1.3287 9.3936 5 Median 1.0508 1.2145 12.706 2 0 Median 1.5877 1.3563 6.3583 3 0 Median 58071000 23474000 34596000 28459000 11615000 16843000 29612000 11859000 17753000 2941 1741 3017 7721;7722;7723;7724;7725 12048;12049;12050;12051;12052;12053;12054;12055 12051 8 EGLDEVAGIINDAK ELVSKIGDKNWKIRKEGLDEVAGIINDAKF KEGLDEVAGIINDAKFIQPNIGELPTALKG K E G A K F 2 0 1 2 0 0 2 2 0 2 1 1 0 0 0 0 0 0 0 1 0 0 14 0 1442.7253 Q14008 Q14008 879 892 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0069475 41.218 1 1.6738 1.3314 NaN 1 Median NaN NaN NaN 0 0 Median 1.6738 1.3314 NaN 1 0 Median 2967800 1026100 1941700 0 0 0 2967800 1026100 1941700 2942 1725 3018 7726 12056;12057 12056 2 EGLEIVK HGPSFPLKGITEQQKEGLEIVKMVMISLEG KGITEQQKEGLEIVKMVMISLEGEDGLDEI K E G V K M 0 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 786.44872 P13010;Q53T09 P13010 203 209 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.030326 68.915 1 1 0.34602 0.3386 35.032 2 Median 0.36746 0.43378 NaN 1 0 Median 0.32583 0.26431 NaN 1 0 Median 391390000 288810000 102580000 365370000 269200000 96172000 26022000 19612000 6411000 2943 1476 3019 7727;7728 12058;12059 12058 2 EGLELPEDEEEK QLKEFDGKSLVSVTKEGLELPEDEEEKKKM VTKEGLELPEDEEEKKKMEESKAKFENLCK K E G E K K 0 0 0 1 0 0 6 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 12 0 1415.6304 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF7;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7;Q58FG0;Q58FF6 B4DMA2 501 512 HSP90AB1;HSP90AB3P;EL52;HSP90AA1;HSP90AA5P;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4 no no 2 1.8864E-12 125.48 3 2 1.8718 1.8429 43.353 4 Median 2.273 2.6777 2.5144 2 0 Median 1.5484 1.265 2.8976 2 0 Median 782540000 238890000 543650000 726520000 216340000 510170000 56019000 22545000 33475000 2944 379;1348;1799 3020 7729;7730;7731;7732;7733 12060;12061;12062;12063;12064;12065;12066;12067;12068;12069;12070;12071;12072;12073 12067 14 EGLELPEDEEEKK QLKEFDGKSLVSVTKEGLELPEDEEEKKKM TKEGLELPEDEEEKKKMEESKAKFENLCKL K E G K K K 0 0 0 1 0 0 6 1 0 0 2 2 0 0 1 0 0 0 0 0 0 0 13 1 1543.7253 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF7;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7;Q58FG0;Q58FF6 B4DMA2 501 513 HSP90AB1;HSP90AB3P;EL52;HSP90AA1;HSP90AA5P;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4 no no 2;3 0.0019683 72.652 3 2.0848 2.3968 NaN 1 Median 2.0848 2.3968 NaN 1 0 Median NaN NaN NaN 0 0 Median 64608000 7120100 57488000 64608000 7120100 57488000 0 0 0 2945 379;1348;1799 3021 7734;7735;7736 12074;12075;12076;12077 12074 4 EGLEYIPLR PWFFKHVENYLKTNREGLEYIPLRHYYHRH YLKTNREGLEYIPLRHYYHRHTRSIFWELQ R E G L R H 0 1 0 0 0 0 2 1 0 1 2 0 0 0 1 0 0 0 1 0 0 0 9 0 1088.5866 Q3LIE7;B7ZAV4;Q15392 Q3LIE7 228 236 Nbla03646;DHCR24 Delta(24)-sterol reductase yes no 2 0.00021282 106.04 2 1.8133 1.8302 19.528 2 Median 1.8133 1.8302 19.528 2 0 Median NaN NaN NaN 0 0 Median 36730000 14837000 21892000 36730000 14837000 21892000 0 0 0 2946 1110 3022 7737;7738 12078;12079;12080;12081 12081 4 EGLISQDGSSLEALLR SFPSIKPDTDQTLKKEGLISQDGSSLEALL GLISQDGSSLEALLRTDPLEKRGAPDPRVD K E G L R T 1 1 0 1 0 1 2 2 0 1 4 0 0 0 0 3 0 0 0 0 0 0 16 0 1686.8788 A0A024R582;J3KMZ8;Q92785 A0A024R582 109 124 DPF2 Zinc finger protein ubi-d4 yes no 2 0.00015201 64.827 1 0.99924 1.0049 NaN 1 Median 0.99924 1.0049 NaN 1 0 Median NaN NaN NaN 0 0 Median 11019000 5662000 5356800 11019000 5662000 5356800 0 0 0 2947 174 3023 7739 12082;12083 12083 2 EGLLAIFK ARCTTSILHNLSHHREGLLAIFKSGGIPAL HNLSHHREGLLAIFKSGGIPALVRMLSSPV R E G F K S 1 0 0 0 0 0 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 889.5273 B4DE59;C9JTX4;C9J826;C9JK18;C9JKY1;A0A0S2Z487;A0A024R1X8;P14923;B4DSW9;B4DL06;B4DGU4;B5BU28;A0A024R2Q3;P35222 B4DE59 217 224 JUP;CTNNB1 Junction plakoglobin;Catenin beta-1 no no 2 0.027494 60.799 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3690700 3690700 0 3690700 3690700 0 0 0 0 2948 964;94 3024 7740 12084 12084 1 EGLLGLQNLLK EVLNHCASSNWSERKEGLLGLQNLLKSQRT SERKEGLLGLQNLLKSQRTLSRVELKRLCE K E G L K S 0 0 1 0 0 1 1 2 0 0 5 1 0 0 0 0 0 0 0 0 0 0 11 0 1196.7129 B7Z5R7;B7Z4E5;B7Z7Q8;H0Y5T1;F8WA11;Q7Z460 B7Z5R7 609 619 CLASP1 CLIP-associating protein 1 no no 2 0.00018556 93.429 2 0.8535 0.86393 22.774 2 Median 0.8535 0.86393 22.774 2 0 Median NaN NaN NaN 0 0 Median 14435000 8287600 6146900 14435000 8287600 6146900 0 0 0 2949 1090 3025 7741;7742 12085;12086;12087;12088 12087 4 EGLNLPSQLAHR SIEDICHVLSTVCKKEGLNLPSQLAHRLAE CKKEGLNLPSQLAHRLAEKSCRNLRKALLM K E G H R L 1 1 1 0 0 1 1 1 1 0 3 0 0 0 1 1 0 0 0 0 0 0 12 0 1333.7102 B4DKE6;Q53HK8;A0A024RDQ8;P40938;Q5U0C2;A0A087X270 B4DKE6 203 214 RFC3 Replication factor C subunit 3 yes no 2;3 0.0032206 66.758 5 1.1459 1.146 26.536 2 Median 1.1459 1.146 26.536 2 0 Median NaN NaN NaN 0 0 Median 26897000 10580000 16318000 26897000 10580000 16318000 0 0 0 2950 391 3026 7743;7744;7745;7746;7747 12089;12090;12091;12092;12093 12092 5 EGLPEDGTLYR YLPQEEKSPLFSVQREGLPEDGTLYRINRF SVQREGLPEDGTLYRINRFSSITAHPERWD R E G Y R I 0 1 0 1 0 0 2 2 0 0 2 0 0 0 1 0 1 0 1 0 0 0 11 0 1248.5986 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 363 373 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.038119 36.334 2 1.3549 1.1458 4.2793 2 Median NaN NaN NaN 0 0 Median 1.3549 1.1458 4.2793 2 0 Median 6614700 2741400 3873200 0 0 0 6614700 2741400 3873200 2951 1938 3027 7748;7749 12094;12095 12094 2 EGLPVALDK ERLTQDAVAKANQTKEGLPVALDKHILGFD KANQTKEGLPVALDKHILGFDTGDAVLNEA K E G D K H 1 0 0 1 0 0 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 940.52295 Q5RLJ0;Q549M8;Q9Y224 Q5RLJ0 177 185 C14orf166 UPF0568 protein C14orf166 yes no 2 0.019158 51.415 1 1.0851 1.1653 NaN 1 Median 1.0851 1.1653 NaN 1 0 Median NaN NaN NaN 0 0 Median 37401000 18090000 19310000 37401000 18090000 19310000 0 0 0 2952 1793 3028 7750 12096;12097 12097 2 EGLSACQQSGFPAVLSSK SEAGKESEMTDLTRKEGLSACQQSGFPAVL SACQQSGFPAVLSSKRRRISYQRDSDENLT K E G S K R 2 0 0 0 1 2 1 2 0 0 2 1 0 1 1 4 0 0 0 1 0 0 18 0 1864.8989 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 168 185 CDCA2 Cell division cycle-associated protein 2 yes no 2 0.00019459 48.112 1 2 1.4463 1.1672 4.5228 2 Median NaN NaN NaN 0 0 Median 1.4463 1.1672 4.5228 2 0 Median 29240000 17443000 11797000 8908800 8908800 0 20331000 8534500 11797000 2953 1233 3029 7751;7752;7753 12098;12099;12100 12099 3 EGLTSIEEVTK VRSQVMDEATALQLREGLTSIEEVTKNLQK LQLREGLTSIEEVTKNLQKFLEGTSCIAGV R E G T K N 0 0 0 0 0 0 3 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1204.6187 Q15149;D3DWL0;Q96IE3 Q15149 4050 4060 PLEC;PLEC1 Plectin yes no 2 0.0003695 83.869 2 1 1.8037 2.0408 7.4803 3 Median 1.8036 2.0291 0.81365 2 0 Median 2.8374 2.3089 NaN 1 0 Median 202620000 72395000 130230000 195460000 70613000 124850000 7160100 1782100 5378000 2954 1754 3030 7754;7755;7756 12101;12102;12103;12104;12105 12101 5 EGLVPLSVSSGK IHSPNIQDSSFDSVREGLVPLSVSSGKNVI SVREGLVPLSVSSGKNVIIKENFALECSPA R E G G K N 0 0 0 0 0 0 1 2 0 0 2 1 0 0 1 3 0 0 0 2 0 0 12 0 1171.6449 Q562F6;B7Z7S9 Q562F6 1157 1168 SGOL2 Shugoshin-like 2 yes no 2 0.025556 49.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8106900 0 8106900 8106900 0 8106900 0 0 0 2955 1795 3031 7757 12106 12106 1 EGMFNNANVLFK RTHFTHSQFIVVSLKEGMFNNANVLFKTKF SLKEGMFNNANVLFKTKFVDGVSTVARFTQ K E G F K T 1 0 3 0 0 0 1 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 12 0 1382.6653 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1 A0A024R158 1147 1158 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 8.4556E-13 126.41 3 6 1.266 1.3962 22.312 9 Median 1.257 1.409 0.53626 3 0 Median 1.3328 1.0629 26.205 6 0 Median 355670000 159580000 196090000 295340000 134620000 160720000 60331000 24959000 35372000 2956 69 3032;3033 7758;7759;7760;7761;7762;7763;7764;7765;7766 12107;12108;12109;12110;12111;12112;12113;12114;12115;12116;12117;12118;12119 12108 40 11 EGMNIVEAMER TEWLDGKHVVFGKVKEGMNIVEAMERFGSR GKVKEGMNIVEAMERFGSRNGKTSKKITIA K E G E R F 1 1 1 0 0 0 3 1 0 1 0 0 2 0 0 0 0 0 0 1 0 0 11 0 1277.5744 V9HWF5;A8K486;P62937;B4DM82;B2RE56;Q71V99 V9HWF5 134 144 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 2 0.00017436 84.054 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4052700 0 4052700 4052700 0 4052700 0 0 0 2957 731 3034 7767;7768 12120;12121 12120 564;565 2 EGNEQLTEEER LEEVTGLKCNFESAREGNEQLTEEERLLKF ESAREGNEQLTEEERLLKFSIGAKCNTDTF R E G E R L 0 1 1 0 0 1 5 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 11 0 1332.5794 Q8NB90 Q8NB90 298 308 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 0.00022817 91.584 1 1.1167 1.1495 NaN 1 Median 1.1167 1.1495 NaN 1 0 Median NaN NaN NaN 0 0 Median 6332000 2775900 3556000 6332000 2775900 3556000 0 0 0 2958 1919 3035 7769 12122;12123 12122 2 EGNGFQEETWR QLRLKPFYLVPKHAKEGNGFQEETWRLSFS KHAKEGNGFQEETWRLSFSHIEKEILNNHG K E G W R L 0 1 1 0 0 1 3 2 0 0 0 0 0 1 0 0 1 1 0 0 0 0 11 0 1351.5793 Q8N884 Q8N884 366 376 MB21D1 Cyclic GMP-AMP synthase yes yes 2 7.8874E-05 98.048 2 2 1.4899 1.4159 1.9842 4 Median 1.2946 1.3882 1.4752 2 0 Median 1.6924 1.4318 0.26248 2 0 Median 81751000 36562000 45189000 68304000 31701000 36603000 13447000 4860600 8586700 2959 1914 3036 7770;7771;7772;7773 12124;12125;12126;12127;12128 12126 5 EGNQEVPFDVPELWYEDEK IPREKTLRLLAEILREGNQEVPFDVPELWY EVPFDVPELWYEDEKHSLNSSSASTTEPDF R E G E K H 0 0 1 2 0 1 5 1 0 0 1 1 0 1 2 0 0 1 1 2 0 0 19 0 2322.0328 E5KNY5;P42704;B4DSR0 E5KNY5 1002 1020 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00039807 55.196 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4807800 0 4807800 4807800 0 4807800 0 0 0 2960 1207 3037 7774 12129 12129 1 EGNSPSFFNPEEAATVTSYLK GFPIIFHGVMGKDEREGNSPSFFNPEEAAT FFNPEEAATVTSYLKLLLAPSSKKGKARLS R E G L K L 2 0 2 0 0 0 3 1 0 0 1 1 0 2 2 3 2 0 1 1 0 0 21 0 2287.0645 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 726 746 MOV10 Putative helicase MOV-10 yes no 2 9.1542E-05 39.005 2 1.2797 1.3214 9.9675 2 Median 1.2797 1.3214 9.9675 2 0 Median NaN NaN NaN 0 0 Median 29599000 12735000 16864000 29599000 12735000 16864000 0 0 0 2961 1102 3038 7775;7776 12130;12131;12132 12132 3 EGNVPNIIIAGPPGTGK VGNEDTVSRLEVFAREGNVPNIIIAGPPGT NVPNIIIAGPPGTGKTTSILCLARALLGPA R E G G K T 1 0 2 0 0 0 1 4 0 3 0 1 0 0 3 0 1 0 0 1 0 0 17 0 1632.8835 Q75MT5;B5BUD2;P35250 Q75MT5 66 82 RFC2 Replication factor C subunit 2 yes no 2 6.9462E-05 70.622 2 2 1.131 1.2204 22.091 4 Linear 1.1116 1.1827 7.9746 2 0 Median 1.0099 0.81356 0.98475 2 0 Median 81240000 44331000 36909000 68805000 37575000 31230000 12435000 6756300 5678900 2962 1079 3039 7777;7778;7779;7780 12133;12134;12135;12136;12137;12138 12133 6 EGPEGFAR PIGPPPAGFRDILLREGPEGFARAVRNHPG FRDILLREGPEGFARAVRNHPGLLLMDTTF R E G A R A 1 1 0 0 0 0 2 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 8 0 861.39808 A0A024R5C5;P11498 A0A024R5C5 548 555 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 0.027663 53.754 1 2.0661 2.0813 NaN 1 Median 2.0661 2.0813 NaN 1 0 Median NaN NaN NaN 0 0 Median 10680000 2740700 7939800 10680000 2740700 7939800 0 0 0 2963 176 3040 7781 12139 12139 1 EGPLCDELIR SVKDSIVQGFQWGTREGPLCDELIRNVKFK QWGTREGPLCDELIRNVKFKILDAVVAQEP R E G I R N 0 1 0 1 1 0 2 1 0 1 2 0 0 0 1 0 0 0 0 0 0 0 10 0 1200.5809 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;K7EP67;K7EJ74 B4DZB1 727 736 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.052973 45.997 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 966870 966870 0 0 0 0 966870 966870 0 2964 794 3041 7782 12140 12140 1 EGPSGSGDSQLSASSR PPVPQGEAEEDSQGKEGPSGSGDSQLSASS GPSGSGDSQLSASSRSESGRMKKSDNKMGI K E G S R S 1 1 0 1 0 1 1 3 0 0 1 0 0 0 1 6 0 0 0 0 0 0 16 0 1520.6703 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 743 758 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 1.9966E-17 128.54 2 2 1.2839 1.2055 28.694 4 Median 0.95328 0.95413 0.66901 2 0 Median 1.7929 1.5651 4.5081 2 0 Median 25607000 11968000 13639000 21026000 10384000 10642000 4580800 1583700 2997100 2965 1699 3042 7783;7784;7785;7786 12141;12142;12143;12144;12145;12146 12144 6 EGPVQFEEDPFGLDK PDKEFSGSDRRQRGREGPVQFEEDPFGLDK EGPVQFEEDPFGLDKFLEEAKQHGGSKRPS R E G D K F 0 0 0 2 0 1 3 2 0 0 1 1 0 2 2 0 0 0 0 1 0 0 15 0 1705.7835 B7Z9X2;B4DY36;A0A024R6E3;Q6I9S2;Q13573;G3V4X8;Q9ULA6 B7Z9X2 414 428 SNW1 SNW domain-containing protein 1 yes no 2 0.054654 38.634 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2966 203 3043 7787 12147 12147 1 EGPYSISVLYGDEEVPR DNADGTQTVNYVPSREGPYSISVLYGDEEV PYSISVLYGDEEVPRSPFKVKVLPTHDASK R E G P R S 0 1 0 1 0 0 3 2 0 1 1 0 0 0 2 2 0 0 2 2 0 0 17 0 1908.9105 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1516 1532 FLNA;FLJ00119 Filamin-A yes no 2 0.00012979 56.951 2 1 1.3281 1.3349 13.365 2 Median 1.3281 1.3349 13.365 2 0 Median NaN NaN NaN 0 0 Median 39056000 15891000 23165000 33833000 15891000 17942000 5222600 0 5222600 2967 1504 3044 7788;7789;7790 12148;12149;12150;12151;12152 12150 5 EGQGEGETQEAAAAAAAAR GPAGRGDGDSGRSQREGQGEGETQEAAAAA EGETQEAAAAAAAARRQEQTLRDATMEVQR R E G A R R 8 1 0 0 0 2 4 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 19 0 1786.8082 P58107 P58107 2614 2632 EPPK1 Epiplakin yes no 2 3.2041E-108 223.46 2 2 2.1941 2.5638 19.542 4 Linear 2.2117 2.4874 1.0627 2 0 Median 2.1862 1.7735 0.47837 2 0 Median 184570000 56377000 128190000 158760000 48146000 110610000 25809000 8231400 17578000 2968 1622 3045 7791;7792;7793;7794 12153;12154;12155;12156;12157;12158;12159 12154 7 EGQGEGETQEAAAATAAAR GPAGRGDGDSGRSQREGQGEGETQEAAAAT EGETQEAAAATAAARRQEQTLRDATMEVQR R E G A R R 7 1 0 0 0 2 4 3 0 0 0 0 0 0 0 0 2 0 0 0 0 0 19 0 1816.8187 A0A075B730;A0A087X1U6;P58107 A0A075B730 3656 3674 EPPK1 Epiplakin no no 2 2.1067E-66 169.4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8026200 0 8026200 8026200 0 8026200 0 0 0 2969 397;1622 3046 7795 12160;12161 12161 2 EGRPPEPTPAK KRVPSPTPAPKEAVREGRPPEPTPAKRKRR EAVREGRPPEPTPAKRKRRSSSSSSSSSSS R E G A K R 1 1 0 0 0 0 2 1 0 0 0 1 0 0 4 0 1 0 0 0 0 0 11 1 1177.6091 A0A140VK53;Q9UQ35;O60382 A0A140VK53 2592 2602 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.001784 90.15 2 0.89339 1.0113 NaN 1 Median 0.89339 1.0113 NaN 1 0 Median NaN NaN NaN 0 0 Median 19962000 8072500 11889000 19962000 8072500 11889000 0 0 0 2970 619 3047 7796;7797 12162;12163 12163 2 EGRPSGEAFVELESEDEVK KIQNGAQGIRFIYTREGRPSGEAFVELESE SGEAFVELESEDEVKLALKKDRETMGHRYV R E G V K L 1 1 0 1 0 0 6 2 0 0 1 1 0 1 1 2 0 0 0 2 0 0 19 1 2105.9753 E9PCY7;G8JLB6;P31943;D6RIU0;D6RBM0;E7EQJ0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EN40;D6RDL0 E9PCY7 50 68 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2;3 9.5059E-13 109.72 3 2 2.3607 2.9485 42.003 4 Linear 2.2394 2.6776 0.87215 2 0 Median 1.5061 1.2941 2.2761 2 0 Median 435910000 130770000 305140000 399340000 117650000 281700000 36563000 13120000 23443000 2971 1231 3048 7798;7799;7800;7801;7802 12164;12165;12166;12167;12168;12169;12170 12164 7 EGRPSGEAFVELESEEEVK KIQNGTSGIRFIYTREGRPSGEAFVELESE SGEAFVELESEEEVKLALKKDRETMGHRYV R E G V K L 1 1 0 0 0 0 7 2 0 0 1 1 0 1 1 2 0 0 0 2 0 0 19 1 2119.991 P55795;B4DFK9;B4DP00 P55795 50 68 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes no 3 6.9406E-06 67.396 2 2 0.83064 0.82386 33.708 4 Median 0.93256 1.0901 0.013115 2 0 Median 0.71875 0.60854 3.2594 2 0 Median 98413000 53197000 45216000 81317000 43176000 38140000 17096000 10020000 7075700 2972 1617 3049 7803;7804;7805;7806 12171;12172;12173;12174;12175;12176;12177;12178;12179;12180 12173 10 EGSALSHVR INLQYVSEVENCKGKEGSALSHVRKIVEKH ENCKGKEGSALSHVRKIVEKHFRDVESQKI K E G V R K 1 1 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 0 1 0 0 9 0 954.48829 B4DUG4;K7ELG9;Q3MHD2 B4DUG4 73 81 LSM12 Protein LSM12 homolog yes no 2 0.0015256 85.666 2 1.8309 1.8211 NaN 1 Median 1.8309 1.8211 NaN 1 0 Median NaN NaN NaN 0 0 Median 13748000 3164900 10583000 13748000 3164900 10583000 0 0 0 2973 1038 3050 7807;7808 12181;12182 12181 2 EGSASTEVLR RDMCLEKDTLGLFLREGSASTEVLRTEAEQ GLFLREGSASTEVLRTEAEQCKNLELKDLL R E G L R T 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 10 0 1047.5197 O75643;A4FU77;Q9H8B9 O75643 754 763 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 3.0008E-08 119.86 2 1 0.84671 0.8297 27.097 2 Median 0.8839 1.0049 NaN 1 0 Median 0.81109 0.68503 NaN 1 0 Median 148130000 60253000 87881000 143310000 57809000 85504000 4821400 2443900 2377500 2974 1411 3051 7809;7810;7811 12183;12184;12185;12186;12187 12183 5 EGSLVINSK KITKNLGFGMGIEFREGSLVINSKNQYKLK MGIEFREGSLVINSKNQYKLKKGMVFSINL R E G S K N 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 9 0 945.51311 Q9Y5B9;Q0VGA3 Q9Y5B9 358 366 SUPT16H FACT complex subunit SPT16 yes no 2 7.6829E-06 129.72 2 0.72604 0.83789 2.1124 2 Median 0.72604 0.83789 2.1124 2 0 Median NaN NaN NaN 0 0 Median 412430000 236380000 176060000 412430000 236380000 176060000 0 0 0 2975 2148 3052 7812;7813 12188;12189;12190 12190 3 EGTLIEDSPDFR CRVKGAPSPKVEWYREGTLIEDSPDFRILQ WYREGTLIEDSPDFRILQKKPRSMAEPEEI R E G F R I 0 1 0 2 0 0 2 1 0 1 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1377.6412 A0A087WX60;Q86TC9;A5PKT7 A0A087WX60 177 188 MYPN Myopalladin yes no 2 0.0010242 62.303 1 1.9432 1.9763 NaN 1 Median 1.9432 1.9763 NaN 1 0 Median NaN NaN NaN 0 0 Median 7288800 3260500 4028300 7288800 3260500 4028300 0 0 0 2976 429 3053 7814 12191 12191 1 EGTLTQVPLAPPPPGAPPSPAPAR ESDLAPSDKEAPTPKEGTLTQVPLAPPPPG APPPPGAPPSPAPARFTARGGRVFTPRGVP K E G A R F 4 1 0 0 0 1 1 2 0 0 2 0 0 0 9 1 2 0 0 1 0 0 24 0 2317.243 P48634;B4DLY2 P48634 1129 1152 PRRC2A Protein PRRC2A yes no 2 0.011737 29.733 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3402200 0 3402200 3402200 0 3402200 0 0 0 2977 1576 3054 7815 12192 12192 1 EGTSVLEHTSDGFPENK TLGMMDMLFATMRRKEGTSVLEHTSDGFPE TSVLEHTSDGFPENKKIES___________ K E G N K K 0 0 1 1 0 0 3 2 1 0 1 1 0 1 1 2 2 0 0 1 0 0 17 0 1845.8381 Q8TED0;H0Y8P4 Q8TED0 498 514 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 3 1.7479E-09 83.418 2 1 0.97139 1.112 5.7326 3 Median 0.9696 1.1147 0.34866 2 0 Median 1.2561 1.0095 NaN 1 0 Median 393860000 194770000 199090000 377170000 187110000 190060000 16693000 7655800 9037000 2978 1936 3055 7816;7817;7818 12193;12194;12195;12196;12197;12198 12195 6 EGTYDGSWALADVMSQLK NRSADFNPDFVFTEKEGTYDGSWALADVMS YDGSWALADVMSQLKKKRAATTLDEKIEKV K E G L K K 2 0 0 2 0 1 1 2 0 0 2 1 1 0 0 2 1 1 1 1 0 0 18 0 1969.9091 B3GQE6;Q3MI07;A0A087WYH5;B7Z6D5;Q96GQ7 B3GQE6 61 78 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.00064518 56.569 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2068800 2068800 0 2068800 2068800 0 0 0 0 2979 899;1099 3056 7819 12199 12199 1 EGVDESFIK ILAMNHLKKIMKTSKEGVDESFIKEAVLAR IMKTSKEGVDESFIKEAVLARLGDDNIDVV K E G I K E 0 0 0 1 0 0 2 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 9 0 1022.492 B2RWN5;Q9H583;Q5T3Q7 B2RWN5 511 519 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00022612 105.57 1 2 1.2199 1.0186 6.714 3 Median 0.96883 1.0828 NaN 1 0 Median 1.2334 0.98212 5.1606 2 0 Median 125290000 64990000 60304000 98107000 52992000 45114000 27188000 11998000 15190000 2980 897 3057 7820;7821;7822 12200;12201;12202 12200 3 EGVEHQLR FIVALKVLFKSQIEKEGVEHQLRREIEIQA FKSQIEKEGVEHQLRREIEIQAHLHHPNIL K E G L R R 0 1 0 0 0 1 2 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 966.48829 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 Q96GD4 116 123 AURKB Aurora kinase B no no 2;3 3.097E-14 171.38 2 0.97371 1.1155 7.038 2 Median 0.97371 1.1155 7.038 2 0 Median NaN NaN NaN 0 0 Median 323610000 155900000 167710000 323610000 155900000 167710000 0 0 0 2981 881;1967 3058 7823;7824 12203;12204;12205 12204 3 EGVHGGLINK TVTKTDKTLVLLMGKEGVHGGLINKKCYEM LLMGKEGVHGGLINKKCYEMASHLRRSQY_ K E G N K K 0 0 1 0 0 0 1 3 1 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1022.5509 P07737;K7EJ44 P07737 117 126 PFN1 Profilin-1 yes no 2 2.0575E-05 103.83 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19710000 0 19710000 19710000 0 19710000 0 0 0 2982 1453 3059 7825 12206 12206 1 EGVVGPELHHK DPVRNRRLTVNEAVKEGVVGPELHHKLLSA EAVKEGVVGPELHHKLLSAERAVTGYKDPY K E G H K L 0 0 0 0 0 0 2 2 2 0 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1200.6251 Q15149;D3DWL0 Q15149 2893 2903 PLEC;PLEC1 Plectin yes no 2;3 0.00098909 74.92 3 1 1.3503 1.3986 26.349 4 Median 1.2364 1.2609 25.616 3 0 Median 2.0124 1.6833 NaN 1 0 Median 71994000 31751000 40243000 70725000 31319000 39406000 1269500 432290 837170 2983 1754 3060 7826;7827;7828;7829 12207;12208;12209;12210 12208 4 EGYGGFR QLSVATEQPELEGPREGYGGFRGQREGSRG QPELEGPREGYGGFRGQREGSRGFRGQRDG R E G F R G 0 1 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 7 0 784.3504 Q9NR30;Q8NI92 Q9NR30 719 725 DDX21;OK/SW-cl.65 Nucleolar RNA helicase 2 yes no 2 0.026905 83.087 2 1.0492 1.2104 8.3291 2 Median 1.0492 1.2104 8.3291 2 0 Median NaN NaN NaN 0 0 Median 254550000 122410000 132150000 254550000 122410000 132150000 0 0 0 2984 2065 3061 7830;7831 12211;12212 12211 2 EGYNNPPISGENLIGLSR DAPVDYFYRPETQHREGYNNPPISGENLIG NNPPISGENLIGLSRARRPHNAIFVNFEDE R E G S R A 0 1 3 0 0 0 2 3 0 2 2 0 0 0 2 2 0 0 1 0 0 0 18 0 1928.9592 Q9Y5Q8;Q5T7U1;Q5T7U0;Q5T7U4;B7Z1V3 Q9Y5Q8 192 209 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.00021062 54.276 2 1 1.0354 1.0531 7.078 2 Median 1.0354 1.0531 7.078 2 0 Median NaN NaN NaN 0 0 Median 26551000 10981000 15570000 23660000 10981000 12678000 2891400 0 2891400 2985 2149 3062 7832;7833;7834 12213;12214;12215;12216 12215 4 EHALLAYTLGVK VGEFEAGISKNGQTREHALLAYTLGVKQLI QTREHALLAYTLGVKQLIVGVNKMDSTEPP R E H V K Q 2 0 0 0 0 0 1 1 1 0 3 1 0 0 0 0 1 0 1 1 0 0 12 0 1313.7343 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q53G89;Q9NZS6;A0A087WV01;Q9H2I7;Q16577;A9X7H1;Q05639;Q59GP5;Q53HR1 Q6IPT9 135 146 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2;3 1.2393E-73 218.49 8 3 2.2114 2.4298 36.168 6 Median 2.297 2.6845 9.7273 4 0 Median 1.5148 1.3182 1.7955 2 0 Median 4939900000 1558000000 3381900000 4516900000 1393900000 3123100000 422970000 164150000 258820000 2986 1658;1790 3063 7835;7836;7837;7838;7839;7840;7841;7842;7843;7844;7845 12217;12218;12219;12220;12221;12222;12223;12224;12225;12226;12227;12228;12229;12230;12231;12232;12233;12234;12235;12236;12237;12238;12239;12240;12241;12242;12243 12220 27 EHCVCVQGNYIK ILDPKKQLVRHRLFREHCVCVQGNYIKDLN LFREHCVCVQGNYIKDLNILGRDLSKTIII R E H I K D 0 0 1 0 2 1 1 1 1 1 0 1 0 0 0 0 0 0 1 2 0 0 12 0 1505.6755 A0A024R5Q8;Q05D32 A0A024R5Q8 377 388 CTDSPL2 CTD small phosphatase-like protein 2 yes no 3 0.043163 14.687 1 1.5576 1.2852 NaN 1 Median NaN NaN NaN 0 0 Median 1.5576 1.2852 NaN 1 0 Median 2351400 924040 1427300 0 0 0 2351400 924040 1427300 2987 187 3064 7846 12244 12244 1 EHDPVGQMVNNPK GYQTAFSQLAFAGKKEHDPVGQMVNNPKIH KKEHDPVGQMVNNPKIHLAQSLHKLSTACP K E H P K I 0 0 2 1 0 1 1 1 1 0 0 1 1 0 2 0 0 0 0 2 0 0 13 0 1463.6827 B4DUC5;P55060;B4DPS6;B4DM31;B4DS32 B4DUC5 696 708 CSE1L Exportin-2 yes no 2;3 0.0071136 46.462 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7274300 0 7274300 7274300 0 7274300 0 0 0 2988 1037 3065 7847;7848 12245;12246 12245 813 2 EHELLEQQK QQEERAKQQGDHSLKEHELLEQQKRAAVLL GDHSLKEHELLEQQKRAAVLLEQERQQEIA K E H Q K R 0 0 0 0 0 2 3 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1152.5775 Q13435;E9PJ04;H0YCG1;E9PJT3 Q13435 174 182 SF3B2 Splicing factor 3B subunit 2 yes no 2 2.8949E-72 234.82 1 1.1119 1.1304 NaN 1 Median 1.1119 1.1304 NaN 1 0 Median NaN NaN NaN 0 0 Median 12609000 5519600 7089200 12609000 5519600 7089200 0 0 0 2989 1713 3066 7849 12247;12248;12249 12249 3 EHEVFQR PGVEPGDIVLLLQEKEHEVFQRDGNDLHMT IVLLLQEKEHEVFQRDGNDLHMTYKIGLVE K E H Q R D 0 1 0 0 0 1 2 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 943.45118 A0A024R6S1;O60884 A0A024R6S1 256 262 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 0.00049712 143.37 2 1.6576 1.6976 NaN 1 Median 1.6576 1.6976 NaN 1 0 Median NaN NaN NaN 0 0 Median 6593000 2562300 4030800 6593000 2562300 4030800 0 0 0 2990 208 3067 7850;7851 12250;12251 12250 2 EHFSSEVTISNLLNLFQR IDVVLSAISAFEIFKEHFSSEVTISNLLNL SSEVTISNLLNLFQRAELSKNGEWYEVLKI K E H Q R A 0 1 2 0 0 1 2 0 1 1 3 0 0 2 0 3 1 0 0 1 0 0 18 0 2133.0855 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 546 563 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 1.8491E-159 253.06 2 1.0507 1.1676 6.4524 2 Median 1.0507 1.1676 6.4524 2 0 Median NaN NaN NaN 0 0 Median 155980000 77022000 78956000 155980000 77022000 78956000 0 0 0 2991 897 3068 7852;7853 12252;12253 12253 2 EHGAFDAVK TDTESELDLISRLSREHGAFDAVKCTHWAE ISRLSREHGAFDAVKCTHWAEGGKGALALA R E H V K C 2 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 9 0 972.46649 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 776 784 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00068897 95.741 1 1.8286 1.7912 NaN 1 Median 1.8286 1.7912 NaN 1 0 Median NaN NaN NaN 0 0 Median 21784000 7182000 14602000 21784000 7182000 14602000 0 0 0 2992 196 3069 7854 12254 12254 1 EHGLNPDVVQNIQDICNSK RSHNLMDRKVLAIMREHGLNPDVVQNIQDI NPDVVQNIQDICNSKHMQKNPPGPRAPSSH R E H S K H 0 0 3 2 1 2 1 1 1 2 1 1 0 0 1 1 0 0 0 2 0 0 19 0 2179.0328 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 204 222 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 3 0.040956 17.678 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11052000 11052000 0 11052000 11052000 0 0 0 0 2993 1873 3070 7855 12255 12255 1 EHGVVPQADNATPSER QKDDINKKAFDKFKKEHGVVPQADNATPSE HGVVPQADNATPSERFEGPYTDFTPWTTEE K E H E R F 2 1 1 1 0 1 2 1 1 0 0 0 0 0 2 1 1 0 0 2 0 0 16 0 1705.802 Q99543;Q08AR5 Q99543 528 543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 3 0.001529 36.127 1 1.6886 1.6631 NaN 1 Median 1.6886 1.6631 NaN 1 0 Median NaN NaN NaN 0 0 Median 13186000 4934900 8251100 13186000 4934900 8251100 0 0 0 2994 1993 3071 7856 12256 12256 1 EHIAASVSIPSEK RTFIVGAQMNVKEFKEHIAASVSIPSEKQR FKEHIAASVSIPSEKQRLIYQGRVLQDDKK K E H E K Q 2 0 0 0 0 0 2 0 1 2 0 1 0 0 1 3 0 0 0 1 0 0 13 0 1366.7092 A0A0G2JL47;A0A024RCR6;A0A0G2JK23;P46379;F6S6P2;X6REW1;A0A0G2JJM1;F6TC96;F6UR09;F6U1F2;F6XTU0;A0A0G2JJR8;A0A1B0GX79;F6WML8;F6VEM6;F6X9W3;F6U341 A0A0G2JL47 44 56 BAT3;BAG6 Large proline-rich protein BAG6 yes no 2 0.00014771 83.862 1 1.3731 1.3975 NaN 1 Median 1.3731 1.3975 NaN 1 0 Median NaN NaN NaN 0 0 Median 12438000 6138000 6300000 12438000 6138000 6300000 0 0 0 2995 368 3072 7857 12257 12257 1 EHIDNFLEQLR YLIRKFMFGFPENWKEHIDNFLEQLRAGEK ENWKEHIDNFLEQLRAGEKNREKTKQKQKT K E H L R A 0 1 1 1 0 1 2 0 1 1 2 0 0 1 0 0 0 0 0 0 0 0 11 0 1412.7048 Q6P0N0;G5E9K5 Q6P0N0 469 479 MIS18BP1 Mis18-binding protein 1 yes no 2 0.0040596 58.699 1 1.0102 0.84687 NaN 1 Median NaN NaN NaN 0 0 Median 1.0102 0.84687 NaN 1 0 Median 4085200 1928800 2156400 0 0 0 4085200 1928800 2156400 2996 1849 3073 7858 12258;12259 12258 2 EHIEDFK TVKKILSDIGLEYCKEHIEDFKQFEPNDFY DIGLEYCKEHIEDFKQFEPNDFYLKNTTWE K E H F K Q 0 0 0 1 0 0 2 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 916.42905 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 33 39 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.0037696 134.06 1 2 1.7143 1.3981 36.322 3 Median 0.70175 0.76496 NaN 1 0 Median 1.7717 1.4329 3.4851 2 0 Median 53299000 28154000 25145000 39958000 23306000 16653000 13341000 4848300 8492900 2997 878 3074 7859;7860;7861 12260;12261;12262;12263;12264 12260 5 EHINLGCDMDFDIAGPSIR NTGKKNAKIKTGYKREHINLGCDMDFDIAG LGCDMDFDIAGPSIRGALVLGYEGWLAGYQ R E H I R G 1 1 1 3 1 0 1 2 1 3 1 0 1 1 1 1 0 0 0 0 0 0 19 0 2158.9776 A0A1L1UHR1;P21796;B3KTS5;C9JI87 A0A1L1UHR1 121 139 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 3 1.551E-06 78.794 2 1 1.6717 1.8523 30.019 3 Plateau 1.6573 1.821 8.1642 2 0 Median 1.2728 1.0932 NaN 1 0 Median 97942000 37652000 60289000 91557000 34750000 56807000 6384900 2902800 3482100 2998 639 3075 7862;7863;7864 12265;12266;12267;12268 12265 495 4 EHLLLAR ILVVAANDGPMPQTREHLLLARQIGVEHVV DGPMPQTREHLLLARQIGVEHVVVYVNKAD R E H A R Q 1 1 0 0 0 0 1 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 850.50249 P49411 P49411 163 169 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.025781 88.734 2 2 1.3669 1.1753 36.995 3 Median 1.9452 2.177 NaN 1 0 Median 1.3579 1.1485 3.2689 2 0 Median 157440000 35429000 122010000 143400000 29651000 113750000 14044000 5778200 8265400 2999 1580 3076 7865;7866;7867;7868 12269;12270;12271;12272;12273 12269 5 EHLLQGLLPDVQVPTSVK LAEKIKVNWTPEINKEHLLQGLLPDVQVPT LQGLLPDVQVPTSVKDMRYCQVSFQDDHVS K E H V K D 0 0 0 1 0 2 1 1 1 0 4 1 0 0 2 1 1 0 0 3 0 0 18 0 1972.0993 A6NHR9;J3KTL8 A6NHR9 1102 1119 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 4.741E-06 75.91 2 2 1.183 1.0831 9.3697 4 Median 1.0413 1.0663 7.0551 2 0 Median 1.4269 1.1453 12.747 2 0 Median 78416000 35075000 43341000 48071000 24006000 24065000 30345000 11069000 19277000 3000 684 3077 7869;7870;7871;7872 12274;12275;12276;12277;12278;12279;12280 12278 7 EHLTTVLDK SSLLCIELFQSLSCKEHLTTVLDKLLLTTQ QSLSCKEHLTTVLDKLLLTTQFPFKINEKV K E H D K L 0 0 0 1 0 0 1 0 1 0 2 1 0 0 0 0 2 0 0 1 0 0 9 0 1054.5659 B4E014;Q9UBD5;B7Z8A5;B7ZAI3;Q6IBJ0;B4DZ51 B4E014 221 229 ORC3;ORC3L Origin recognition complex subunit 3 yes no 2 0.0012322 88.136 1 1 1.2868 1.1653 26.818 2 Median 1.3898 1.4086 NaN 1 0 Median 1.1915 0.96402 NaN 1 0 Median 18493000 6761400 11732000 16574000 5941000 10633000 1919600 820360 1099300 3001 1058 3078 7873;7874 12281;12282 12281 2 EHMQPTHPIR ESSEKAYSEAHEISKEHMQPTHPIRLGLAL HEISKEHMQPTHPIRLGLALNYSVFYYEIQ K E H I R L 0 1 0 0 0 1 1 0 2 1 0 0 1 0 2 0 1 0 0 0 0 0 10 0 1244.6084 B4DE78;B3KNB4;P61981;B4DHC4 B4DE78 123 132 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 2 0.0039793 59.245 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3002 912 3079 7875 12283 12283 750 1 EHPFLVK LRRPKRIIIRGHDEREHPFLVKGGEDLRQD IIRGHDEREHPFLVKGGEDLRQDQRVEQLF R E H V K G 0 0 0 0 0 0 1 0 1 0 1 1 0 1 1 0 0 0 0 1 0 0 7 0 868.48069 P78527 P78527 3747 3753 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.009923 113.85 1 1 0.48533 0.45707 68.174 2 Median 0.65837 0.74018 NaN 1 0 Median 0.35777 0.28224 NaN 1 0 Median 78263000 46749000 31514000 72828000 42817000 30011000 5434400 3931200 1503200 3003 1665 3080 7876;7877 12284;12285;12286 12284 3 EHQDGTAFSCTPDGR PSTSFCHLCPNSFCKEHQDGTAFSCTPDGR EHQDGTAFSCTPDGRSYCCEHDLGAASVRS K E H G R S 1 1 0 2 1 1 1 2 1 0 0 0 0 1 1 1 2 0 0 0 0 0 15 0 1676.6849 O96028 O96028 1306 1320 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2;3 7.6202E-22 172.76 4 2 0.82997 0.88619 24.938 6 Median 0.84262 0.90828 7.219 4 0 Linear 1.5841 1.353 0.51736 2 0 Median 95574000 46168000 49406000 87575000 43028000 44548000 7998500 3140500 4858000 3004 1435 3081 7878;7879;7880;7881;7882;7883 12287;12288;12289;12290;12291;12292;12293;12294;12295 12290 9 EHQEFLTK NRKNELEQLKEAFAKEHQEFLTKLAFAEER LKEAFAKEHQEFLTKLAFAEERNQNLMLEL K E H T K L 0 0 0 0 0 1 2 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 8 0 1030.5084 P49454 P49454 1081 1088 CENPF Centromere protein F yes yes 2 0.0016981 106.6 1 1.4854 1.5837 NaN 1 Median 1.4854 1.5837 NaN 1 0 Median NaN NaN NaN 0 0 Median 20864000 8615600 12249000 20864000 8615600 12249000 0 0 0 3005 1581 3082 7884 12296 12296 1 EHQEMDEGSQSLEK SKDRTTSFFLNSPEKEHQEMDEGSQSLEKL KEHQEMDEGSQSLEKLDVSKGNSSVSITSD K E H E K L 0 0 0 1 0 2 4 1 1 0 1 1 1 0 0 2 0 0 0 0 0 0 14 0 1645.689 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1287 1300 AHCTF1 Protein ELYS yes no 2 4.8563E-05 87.001 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3051600 0 3051600 3051600 0 3051600 0 0 0 3006 1945 3083 7885 12297 12297 1788 1 EHSAFQAPAVK FMMWKFINFQLRRWREHSAFQAPAVKKKPT RRWREHSAFQAPAVKKKPTVTKGRSSKKGT R E H V K K 3 0 0 0 0 1 1 0 1 0 0 1 0 1 1 1 0 0 0 1 0 0 11 0 1183.5986 G3XAN4;Q6FHU7;Q6FHL3;A8K032;Q15629 G3XAN4 239 249 TRAM1 Translocating chain-associated membrane protein;Translocating chain-associated membrane protein 1 yes no 2 5.1395E-31 182.39 1 1.0456 1.1161 NaN 1 Median 1.0456 1.1161 NaN 1 0 Median NaN NaN NaN 0 0 Median 20962000 11349000 9612800 20962000 11349000 9612800 0 0 0 3007 697 3084 7886 12298 12298 1 EHSLQVSPSLEK PPMQLGFPSLHSFIKEHSLQVSPSLEKGAK FIKEHSLQVSPSLEKGAKADTGLDDDIENE K E H E K G 0 0 0 0 0 1 2 0 1 0 2 1 0 0 1 3 0 0 0 1 0 0 12 0 1352.6936 O95235 O95235 526 537 KIF20A Kinesin-like protein KIF20A yes yes 2 1.4732E-37 176.95 1 1 1.029 0.90442 36.732 2 Median 1.1781 1.1727 NaN 1 0 Median 0.89872 0.69754 NaN 1 0 Median 22567000 11747000 10820000 19023000 9889400 9133900 3544100 1857500 1686600 3008 1421 3085 7887;7888 12299;12300 12299 2 EHTLAWK ______________________________ LIIGSGGREHTLAWKLAQSHHVKQVLVAPG R E H W K L 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 1 1 0 0 0 0 7 0 883.4552 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;C9JZG2;C9JKQ7 Q3B7A7 14 20 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.0079269 128.48 1 2.0789 2.2174 NaN 1 Median 2.0789 2.2174 NaN 1 0 Median NaN NaN NaN 0 0 Median 20901000 7725900 13175000 20901000 7725900 13175000 0 0 0 3009 1507 3086 7889 12301 12301 1 EHVDVIAK SHRVLQRALECLPSKEHVDVIAKFAQLEFQ LECLPSKEHVDVIAKFAQLEFQLGDAERAK K E H A K F 1 0 0 1 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 2 0 0 8 0 909.49198 Q14690 Q14690 1759 1766 PDCD11 Protein RRP5 homolog yes yes 2 1.0848E-14 174.27 2 2 1.3333 1.2364 6.7487 4 Median 1.1639 1.3072 5.0672 2 0 Median 1.473 1.1832 3.4164 2 0 Median 200970000 91627000 109340000 170840000 79578000 91261000 30127000 12049000 18077000 3010 1741 3087 7890;7891;7892;7893 12302;12303;12304;12305;12306;12307 12302 6 EHVEEISELFYDAK ANLLAKINGKDSIEKEHVEEISELFYDAKS KEHVEEISELFYDAKSSAKILADQQDKYMK K E H A K S 1 0 0 1 0 0 4 0 1 1 1 1 0 1 0 1 0 0 1 1 0 0 14 0 1707.7992 B5BUB1;Q9Y265;H7C4G5 B5BUB1 428 441 RUVBL1 RuvB-like 1 yes no 2;3 1.907E-21 147.26 2 3 1.1866 0.95381 10.301 4 Median 0.75988 0.77768 NaN 1 0 Median 1.1998 0.95753 0.49087 3 0 Median 50545000 26669000 23876000 31721000 18499000 13222000 18824000 8170600 10653000 3011 1076 3088 7894;7895;7896;7897;7898 12308;12309;12310;12311;12312;12313 12309 6 EHVIEALR IGQVIMSIRTKLQNKEHVIEALRRAKFKFP RTKLQNKEHVIEALRRAKFKFPGRQKIHIS K E H L R R 1 1 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 965.52943 F8W7C6;A0A087WV22;H7C123;X5D7P1;H7C2C5;X1WI28;X5D2T3;P27635 X1WI28 146 153 RPL10 60S ribosomal protein L10 no no 2 1.1981E-05 145.34 2 2 0.96934 1.0688 9.9275 4 Linear 0.89734 1.0554 4.5554 2 0 Median 1.0319 0.89414 0.32019 2 0 Median 1233100000 649050000 584050000 1132900000 597680000 535250000 100180000 51375000 48805000 3012 1524;1266 3089 7899;7900;7901;7902 12314;12315;12316;12317;12318;12319;12320;12321;12322;12323;12324;12325 12314 12 EHVIEALRR IGQVIMSIRTKLQNKEHVIEALRRAKFKFP TKLQNKEHVIEALRRAKFKFPGRQKIHISK K E H R R A 1 2 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 9 1 1121.6305 F8W7C6;A0A087WV22;H7C123;X5D7P1;H7C2C5;X1WI28;X5D2T3;P27635 X1WI28 146 154 RPL10 60S ribosomal protein L10 no no 3 0.00017697 95.502 2 1 1.0007 1.061 7.6677 3 Median 0.96789 1.0774 2.1614 2 0 Median 1.0464 0.94589 NaN 1 0 Median 48812000 25926000 22885000 45746000 24402000 21344000 3066200 1524900 1541300 3013 1524;1266 3090 7903;7904;7905 12326;12327;12328 12327 2 EHYLEDILAK GCPVIKVPGFMYPVKEHYLEDILAKLGKHQ MYPVKEHYLEDILAKLGKHQYLHRHRHHES K E H A K L 1 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1229.6292 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 592 601 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0060288 59.35 1 1.4828 1.1666 NaN 1 Median NaN NaN NaN 0 0 Median 1.4828 1.1666 NaN 1 0 Median 3858200 1652500 2205700 0 0 0 3858200 1652500 2205700 3014 122 3091 7906 12329 12329 1 EIADLGEALATAVIPQWQK AKVKAQTAPNKDVQREIADLGEALATAVIP LGEALATAVIPQWQKDELRETLKSLKKVMD R E I Q K D 4 0 0 1 0 2 2 1 0 2 2 1 0 0 1 0 1 1 0 1 0 0 19 0 2052.0892 P49588 P49588 794 812 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 1.4356E-22 130.56 1 4.1228 4.1932 NaN 1 Median 4.1228 4.1932 NaN 1 0 Median NaN NaN NaN 0 0 Median 12544000 2554200 9990000 12544000 2554200 9990000 0 0 0 3015 1583 3092 7907 12330 12330 1 EIAEAYDVLSDPR HPDKNKEPGAEEKFKEIAEAYDVLSDPRKR FKEIAEAYDVLSDPRKREIFDRYGEEGLKG K E I P R K 2 1 0 2 0 0 2 0 0 1 1 0 0 0 1 1 0 0 1 1 0 0 13 0 1476.7096 Q6FI51;Q6FHS4;P25685;B4DKK9 Q6FI51 47 59 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 0.0077003 54.343 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9914100 0 9914100 9914100 0 9914100 0 0 0 3016 1517 3093 7908 12331 12331 1 EIAEAYLGK FYPEEVSSMVLTKMKEIAEAYLGKTVTNAV VLTKMKEIAEAYLGKTVTNAVVTVPAYFND K E I G K T 2 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 992.51786 E9PN89;A4D111;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65 V9HW22 129 137 HSPA8;LOC401308;HEL-S-72p Heat shock cognate 71 kDa protein no no 2 0.0021808 75.738 2 2 1.4101 1.354 18.094 4 Median 1.3786 1.5822 1.4551 2 0 Median 1.4405 1.1574 1.6173 2 0 Median 400910000 168020000 232890000 364400000 152230000 212170000 36513000 15794000 20719000 3017 1467;1248 3094 7909;7910;7911;7912 12332;12333;12334;12335;12336;12337;12338 12332 7 EIAEEYGGVMVSFPR KHHRHFVIRRGQVLREIAEEYGGVMVSFPR EIAEEYGGVMVSFPRSGTQSDKVTLKGAKD R E I P R S 1 1 0 0 0 0 3 2 0 1 0 0 1 1 1 1 0 0 1 2 0 0 15 0 1682.7974 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H0Y394;Q6ZS03;Q96CF6;Q6ZN49;H7C2D1;Q2HJC8 A0A024R4E5 825 839 HDLBP Vigilin yes no 2 0.0001088 74.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8098000 0 8098000 8098000 0 8098000 0 0 0 3018 154 3095 7913 12339 12339 130 1 EIAENALGK QGRSTGEAFVQFASKEIAENALGKHKERIG VQFASKEIAENALGKHKERIGHRYIEIFRS K E I G K H 2 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 943.49746 Q53F48;A0A024QZK8;P31942 Q53F48 68 76 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 2 0.0014475 86.095 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40701000 0 40701000 40701000 0 40701000 0 0 0 3019 23 3096 7914 12340 12340 1 EIAIDVPNVSWSDIGGLESIK DFLQAMNDIRPSAMREIAIDVPNVSWSDIG PNVSWSDIGGLESIKLKLEQAVEWPLKHPE R E I I K L 1 0 1 2 0 0 2 2 0 4 1 1 0 0 1 3 0 1 0 2 0 0 21 0 2241.1529 Q8NB90 Q8NB90 616 636 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 0.003005 37.013 2 0.95211 0.94531 NaN 1 Median 0.95211 0.94531 NaN 1 0 Median NaN NaN NaN 0 0 Median 8186700 3164000 5022800 8186700 3164000 5022800 0 0 0 3020 1919 3097 7915;7916 12341;12342;12343 12343 3 EIAQDFK TELLIRKLPFQRLVREIAQDFKTDLRFQSA LPFQRLVREIAQDFKTDLRFQSAAIGALQE R E I F K T 1 0 0 1 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 849.42323 K7EK07;B2R4P9;P84243;B4E380;Q16695;B2R6Y1;K7EMV3;B4DEB1;A8K4Y7;K7ES00;Q6TXQ4;P68431;Q71DI3 K7EK07 74 80 H3F3B;H3F3A;HIST3H3;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.2 no no 2 0.020239 97.473 8 4 0.76538 0.74756 9.4642 6 Median 0.76154 0.80792 9.7331 4 0 Median 0.89846 0.72763 0.98334 2 0 Median 23916000000 23652000000 263860000 21273000000 21033000000 239330000 2642800000 2618300000 24537000 3021 827;1661;1865 3098 7917;7918;7919;7920;7921;7922;7923;7924;7925;7926;7927;7928 12344;12345;12346;12347;12348;12349;12350;12351;12352;12353;12354;12355;12356;12357;12358;12359;12360;12361;12362;12363;12364;12365;12366;12367;12368;12369;12370;12371;12372;12373;12374;12375;12376;12377;12378;12379;12380 12345 37 EIAQDFKTDLR TELLIRKLPFQRLVREIAQDFKTDLRFQSA RLVREIAQDFKTDLRFQSAAIGALQEASEA R E I L R F 1 1 0 2 0 1 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 11 1 1334.683 K7EK07;B2R4P9;P84243;B4E380;Q16695;B2R6Y1;K7EMV3;B4DEB1;A8K4Y7;K7ES00;Q6TXQ4;P68431;Q71DI3 K7EK07 74 84 H3F3B;H3F3A;HIST3H3;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.2 no no 2 0.033458 57.785 1 0.83001 0.97612 NaN 1 Median 0.83001 0.97612 NaN 1 0 Median NaN NaN NaN 0 0 Median 71786000 34888000 36898000 71786000 34888000 36898000 0 0 0 3022 827;1661;1865 3099 7929 12381 12381 0 EIAQEFK TELLIRKLPFQRLVREIAQEFKTDLRFQSS LPFQRLVREIAQEFKTDLRFQSSAVMALQE R E I F K T 1 0 0 0 0 1 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 863.43888 Q5TEC6 Q5TEC6 74 80 HIST2H3PS2 Histone H3 yes yes 2 0.042314 58.604 1 0.74185 0.83827 NaN 1 Median 0.74185 0.83827 NaN 1 0 Median NaN NaN NaN 0 0 Median 142020000 83958000 58063000 142020000 83958000 58063000 0 0 0 3023 1828 3100 7930 12382 12382 1 EIAQEFKTDLR TELLIRKLPFQRLVREIAQEFKTDLRFQSS RLVREIAQEFKTDLRFQSSAVMALQEAREA R E I L R F 1 1 0 1 0 1 2 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 11 1 1348.6987 Q5TEC6 Q5TEC6 74 84 HIST2H3PS2 Histone H3 yes yes 2;3 1.4546E-30 185.27 8 4 0.75888 0.86828 23.976 7 Median 0.72602 0.87313 20.395 5 0 Median 0.76989 0.68824 7.2074 2 0 Median 13864000000 11016000000 2847800000 12026000000 9619100000 2407200000 1837600000 1397100000 440560000 3024 1828 3101 7931;7932;7933;7934;7935;7936;7937;7938;7939;7940;7941;7942 12383;12384;12385;12386;12387;12388;12389;12390;12391;12392;12393;12394;12395;12396;12397;12398;12399;12400;12401;12402;12403;12404;12405;12406;12407;12408;12409;12410;12411;12412;12413;12414 12411 32 EIAQEGKGDYLR E I L R 1 1 0 1 0 1 2 2 0 1 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1377.6888 REV__P31689 yes yes 2 0.0012743 86.136 1 0.79486 0.93858 NaN 1 Median 0.79486 0.93858 NaN 1 0 Median NaN NaN NaN 0 0 Median 136910000 73733000 63181000 136910000 73733000 63181000 0 0 0 + 3025 2177 3102 7943 12415;12416;12417 12416 3 EICAVLAAVTEVIR SKVQRFWESNSAAHKEICAVLAAVTEVIRS KEICAVLAAVTEVIRSQGGKETETEYFAAL K E I I R S 3 1 0 0 1 0 2 0 0 2 1 0 0 0 0 0 1 0 0 3 0 0 14 0 1542.844 B3KMR5;Q5JTH9;A0A087X1U8 B3KMR5 123 136 RRP12 RRP12-like protein yes no 2 0.042321 45.829 1 1.3496 1.3608 NaN 1 Median 1.3496 1.3608 NaN 1 0 Median NaN NaN NaN 0 0 Median 6299200 2132200 4167000 6299200 2132200 4167000 0 0 0 3026 907 3103 7944 12418 12418 0 EIDDTYIEDAADVDAR EIVLPENAEKELEEREIDDTYIEDAADVDA IDDTYIEDAADVDARKQAIRDAERVKEMKR R E I A R K 3 1 0 5 0 0 2 0 0 2 0 0 0 0 0 0 1 0 1 1 0 0 16 0 1809.7905 B4DSH1;B3KY60;Q99459 B4DSH1 479 494 CDC5L Cell division cycle 5-like protein yes no 2 2.3238E-18 127.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3027 957 3104 7945 12419 12419 1 EIDGGLETLR ASQVTLEGDKLKVEREIDGGLETLRLKLPA LKVEREIDGGLETLRLKLPAVVTADLRLNE R E I L R L 0 1 0 1 0 0 2 2 0 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1101.5666 P38117;M0QY67 P38117 165 174 ETFB Electron transfer flavoprotein subunit beta yes no 2 0.0011505 75.378 2 3.8232 4.0044 2.7155 2 Median 3.8232 4.0044 2.7155 2 0 Median NaN NaN NaN 0 0 Median 55773000 12055000 43718000 55773000 12055000 43718000 0 0 0 3028 1551 3105 7946;7947 12420;12421;12422;12423;12424;12425 12420 6 EIDLLLGQTDDTR AVLKNEKLRDKERRKEIDLLLGQTDDTRYH RKEIDLLLGQTDDTRYHVLVNLGKKITDYG K E I T R Y 0 1 0 3 0 1 1 1 0 1 3 0 0 0 0 0 2 0 0 0 0 0 13 0 1487.7468 O75643 O75643 156 168 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 1.0505E-37 159.09 3 2 1.0062 1.1224 15.702 3 Plateau 0.99567 1.1224 NaN 1 0 Median 1.0148 0.85791 3.4146 2 0 Median 171630000 120960000 50668000 157360000 114170000 43195000 14269000 6795600 7473000 3029 1411 3106 7948;7949;7950;7951;7952 12426;12427;12428;12429;12430;12431;12432;12433;12434 12429 9 EIDLVNRDPK ADELSEKQVYDAHTKEIDLVNRDPKHLNDD DAHTKEIDLVNRDPKHLNDDVVKIDFEDVI K E I P K H 0 1 1 2 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1197.6354 C9JKI3;Q7Z4F3;A0A024R757;E9PCT5;A9XTE5;Q2TNI1;Q59E85;Q03135;A0A1I9UVK8;A0A024R2D8;P56539 C9JKI3 17 26 CAV1;CAV3 Caveolin;Caveolin-1;Caveolin-3 yes no 2 0.010068 71.692 2 1.0419 1.1704 7.9143 2 Median 1.0419 1.1704 7.9143 2 0 Median NaN NaN NaN 0 0 Median 42270000 19393000 22876000 42270000 19393000 22876000 0 0 0 3030 215 3107 7953;7954 12435;12436 12435 2 EIDPENFK DFEKRLGTVLPVIEKEIDPENFKDIMEETE VLPVIEKEIDPENFKDIMEETEEKAADRLL K E I F K D 0 0 1 1 0 0 2 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 8 0 990.46583 O75691;B4DN27 O75691 2413 2420 UTP20 Small subunit processome component 20 homolog yes no 2 0.012794 66.799 1 1 1.4496 1.3781 11.468 2 Median 1.3258 1.4945 NaN 1 0 Median 1.5849 1.2708 NaN 1 0 Median 80202000 35538000 44663000 76009000 33871000 42138000 4192600 1667400 2525300 3031 1412 3108 7955;7956 12437;12438;12439 12438 3 EIDVISIPSK CVRKRPLNKQELAKKEIDVISIPSKCLLLV ELAKKEIDVISIPSKCLLLVHEPKLKVDLT K E I S K C 0 0 0 1 0 0 1 0 0 3 0 1 0 0 1 2 0 0 0 1 0 0 10 0 1099.6125 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1;Q5JR91;Q5JR89 A8K3S3 277 286 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 2.8483E-09 125.82 2 2 1.0303 1.0208 4.5805 4 Linear 0.90718 1.0175 1.1782 2 0 Median 1.1766 0.94099 0.68124 2 0 Median 173100000 88334000 84769000 163410000 83854000 79554000 9694700 4479900 5214800 3032 626 3109 7957;7958;7959;7960 12440;12441;12442;12443;12444;12445;12446;12447;12448;12449 12444 10 EIEALNFK VLESHFQSQKDCYEKEIEALNFKVVHLSQE QKDCYEKEIEALNFKVVHLSQEINHLQKLF K E I F K V 1 0 1 0 0 0 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 962.5073 Q9NQX4;Q9P0E7 Q9NQX4 1165 1172 MYO5C Unconventional myosin-Vc yes no 2 0.005003 86.866 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3033 2062 3110 7961 12450 12450 1 EIEDFDSLEALR DSQTQLFVSSKDVIKEIEDFDSLEALRLEG VIKEIEDFDSLEALRLEGNTVGVEAARVIA K E I L R L 1 1 0 2 0 0 3 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 12 0 1435.6831 B4DY16;A0A024R1U0;P46060;B0QYT5;B0QYT4 B4DY16 34 45 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.020956 49.3 1 2.2023 2.2332 NaN 1 Median 2.2023 2.2332 NaN 1 0 Median NaN NaN NaN 0 0 Median 9796000 3541600 6254400 9796000 3541600 6254400 0 0 0 3034 90 3111 7962 12451 12451 1 EIEEESETTVEADLTDK DISNTLIMLADKHAKEIEEESETTVEADLT EEESETTVEADLTDKQKHQLKHRELFLSRQ K E I D K Q 1 0 0 2 0 0 6 0 0 1 1 1 0 0 0 1 3 0 0 1 0 0 17 0 1936.8637 E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8 E7EQY4 65 81 MTA3;tmp_locus_6 Metastasis-associated protein MTA3 yes no 2 8.0952E-18 126.09 2 2 0.69254 0.6913 48.02 3 Median 0.66229 0.66069 6.4038 2 0 Median 1.9112 1.5122 NaN 1 0 Median 32741000 16556000 16185000 24288000 11166000 13122000 8452600 5390000 3062600 3035 1221 3112 7963;7964;7965;7966 12452;12453;12454;12455;12456;12457;12458 12456 7 EIEELQSQAQALSQEGK KKQQMLENQMEVRKKEIEELQSQAQALSQE EELQSQAQALSQEGKSTDEVDSKRLTVQTK K E I G K S 2 0 0 0 0 4 4 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 17 0 1886.9222 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1349 1365 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.987E-35 162.22 2 2 2.8805 2.6012 27.205 4 Median 1.953 2.0507 2.8347 2 0 Median 4.1628 3.2808 2.0346 2 0 Median 42536000 14651000 27885000 34608000 13091000 21516000 7928100 1559200 6368900 3036 415 3113 7967;7968;7969;7970 12459;12460;12461;12462;12463;12464 12460 6 EIEESKEPGVEDTEWSNTQTEEAIQTR NGGLKAKTITKKRKKEIEESKEPGVEDTEW TEWSNTQTEEAIQTRSRTRKRVQK______ K E I T R S 1 1 1 1 0 2 8 1 0 2 0 1 0 0 1 2 4 1 0 1 0 0 27 1 3134.4164 A8K245;Q99986;H0YJF7 A8K245 361 387 VRK1 Serine/threonine-protein kinase VRK1 yes no 3 3.084E-10 52.824 1 2 0.99205 0.84237 16.269 3 Median 0.99205 1.1134 NaN 1 0 Median 0.97817 0.84 0.39831 2 0 Median 48833000 25185000 23648000 12783000 6810100 5973000 36050000 18375000 17675000 3037 707 3114 7971;7972;7973 12465;12466;12467;12468 12465 4 EIEEYIHK VIYYKIRQQLAKLGKEIEEYIHKPKYCLPF QLAKLGKEIEEYIHKPKYCLPFLQPGRLVK K E I H K P 0 0 0 0 0 0 3 0 1 2 0 1 0 0 0 0 0 0 1 0 0 0 8 0 1059.5237 P42285;B4E3M6 P42285 639 646 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.0022334 101.64 2 1.3 1.3078 NaN 1 Median 1.3 1.3078 NaN 1 0 Median NaN NaN NaN 0 0 Median 35968000 22538000 13430000 35968000 22538000 13430000 0 0 0 3038 1563 3115 7974;7975 12469;12470 12470 2 EIEGEEIEIVLAKPPDK DRGAAVKAMDEMNGKEIEGEEIEIVLAKPP EGEEIEIVLAKPPDKKRKERQAARQASRST K E I D K K 1 0 0 1 0 0 5 1 0 3 1 2 0 0 2 0 0 0 0 1 0 0 17 1 1908.0092 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5;B4DT28;B4DMD1;Q7Z334 B2R7W4 398 414 HNRNPR;HNRPR;DKFZp686A13234;DKFZp686O0665 Heterogeneous nuclear ribonucleoprotein R yes no 3 0.00030082 39.982 1 1.4974 1.714 NaN 1 Median 1.4974 1.714 NaN 1 0 Median NaN NaN NaN 0 0 Median 18913000 6405700 12507000 18913000 6405700 12507000 0 0 0 3039 855 3116 7976 12471;12472 12472 2 EIEHLVER KEAGLSNAAFESDFKEIEHLVERKKVVVWA AFESDFKEIEHLVERKKVVVWADQTAEQPK K E I E R K 0 1 0 0 0 0 3 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 1023.5349 B2R6H3;Q8NI77;Q4G194 B2R6H3 603 610 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 0.022631 57.047 1 0.71417 0.74326 NaN 1 Median 0.71417 0.74326 NaN 1 0 Median NaN NaN NaN 0 0 Median 21086000 11370000 9716300 21086000 11370000 9716300 0 0 0 3040 842 3117 7977 12473 12473 1 EIEIDIEPTDK ______________________________ LTGKEIEIDIEPTDKVERIKERVEEKEGIP K E I D K V 0 0 0 2 0 0 3 0 0 3 0 1 0 0 1 0 1 0 0 0 0 0 11 0 1300.6398 Q15843;F8VSA6;E9PS38;S4R3E9;E9PL57 Q15843 12 22 NEDD8;NEDD8-MDP1 NEDD8 yes no 2 7.9385E-10 125.48 2 2 0.80718 0.86362 9.7979 3 Plateau 0.76865 0.86362 7.6986 2 0 Median 0.95406 0.74997 NaN 1 0 Median 215580000 117330000 98258000 199100000 111570000 87529000 16489000 5759600 10729000 3041 1766 3118 7978;7979;7980;7981 12474;12475;12476;12477;12478;12479;12480 12477 7 EIELGNEDYCIK LCIEDRPMPKLEIEKEIELGNEDYCIKREY IEKEIELGNEDYCIKREYLICEDYKLFWVA K E I I K R 0 0 1 1 1 0 3 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 12 0 1481.6708 O60566 O60566 758 769 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.00019323 90.108 2 1 0.744 0.75124 15.715 3 Median 0.69674 0.70534 8.9149 2 0 Median 1.1669 0.90507 NaN 1 0 Median 17846000 9446100 8399700 14359000 7609700 6748900 3487200 1836500 1650700 3042 1396 3119 7982;7983;7984 12481;12482;12483;12484;12485 12482 4 EIELIGSGGFGQVFK ETKYTVDKRFGMDFKEIELIGSGGFGQVFK EIELIGSGGFGQVFKAKHRIDGKTYVIKRV K E I F K A 0 0 0 0 0 1 2 4 0 2 1 1 0 2 0 1 0 0 0 1 0 0 15 0 1579.8246 Q8IW76;B7ZKK7;P19525;Q05CP4;Q6PK38 Q8IW76 269 283 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 5.2424E-15 125.74 2 1.3315 1.3589 0.33787 2 Median 1.3315 1.3589 0.33787 2 0 Median NaN NaN NaN 0 0 Median 60665000 27273000 33392000 60665000 27273000 33392000 0 0 0 3043 1111 3120 7985;7986 12486;12487;12488;12489 12487 4 EIELPSGQLMGLFNR LGIGLQHKSVDQLEKEIELPSGQLMGLFNR EIELPSGQLMGLFNRIIRKVVKLFNEVQEK K E I N R I 0 1 1 0 0 1 2 2 0 1 3 0 1 1 1 1 0 0 0 0 0 0 15 0 1702.8712 Q9H0A0;A0A087WV29 Q9H0A0 883 897 NAT10 N-acetyltransferase 10 yes no 2 2.4284E-32 145.46 3 4 1.0281 0.88336 NaN 1 Median NaN NaN NaN 0 0 Median 1.0281 0.88336 NaN 1 0 Median 290710000 25155000 265560000 189110000 3218600 185890000 101600000 21937000 79663000 3044 2023 3121;3122 7987;7988;7989;7990;7991;7992;7993 12490;12491;12492;12493;12494;12495;12496;12497;12498;12499 12491 1860 10 EIEQVYR SQLTTRSKAIASKTKEIEQVYRQDCETFGM KAIASKTKEIEQVYRQDCETFGMVVKMLIE K E I Y R Q 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 935.47125 F8W0Q9;F8WF16;B7Z615;B7Z8L1;F8W6A0;B7Z8M9;B7Z695;Q8NEY8 F8W0Q9 318 324 PPHLN1 Periphilin-1 yes no 2 0.03244 66.994 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1551900 0 1551900 0 0 0 1551900 0 1551900 3045 1264 3123 7994;7995 12500;12501 12500 2 EIERPFETYK QKATLLQQRREGEMKEIERPFETYKENIEL EGEMKEIERPFETYKENIELKENDEKMKAM K E I Y K E 0 1 0 0 0 0 3 0 0 1 0 1 0 1 1 0 1 0 1 0 0 0 10 1 1310.6507 P46013 P46013 924 933 MKI67 Antigen KI-67 yes yes 2;3 1.5803E-29 179.1 4 4 2.4449 2.5154 14.535 8 Median 1.8475 2.2024 8.24 4 0 Median 3.2777 2.7863 5.6539 4 0 Median 585760000 185610000 400150000 452270000 154610000 297660000 133490000 31002000 102490000 3046 1569 3124 7996;7997;7998;7999;8000;8001;8002;8003 12502;12503;12504;12505;12506;12507;12508;12509;12510;12511;12512;12513;12514;12515;12516 12510 15 EIESEIDSEEELINK ESALKRSELVNWYLKEIESEIDSEEELINK EIESEIDSEEELINKKRIIEKVIHRLTHYD K E I N K K 0 0 1 1 0 0 6 0 0 3 1 1 0 0 0 2 0 0 0 0 0 0 15 0 1775.8313 Q14566;Q4ZG57 Q14566 755 769 MCM6 DNA replication licensing factor MCM6 yes no 2 2.1981E-09 107.85 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4867700 0 4867700 4867700 0 4867700 0 0 0 3047 1734 3125 8004;8005 12517;12518;12519 12517 3 EIESSPQYR EEFRQRELRAAQLAREIESSPQYRLRIAME AAQLAREIESSPQYRLRIAMENDDGRTEEE R E I Y R L 0 1 0 0 0 1 2 0 0 1 0 0 0 0 1 2 0 0 1 0 0 0 9 0 1107.5197 A0A024QZC0;A0A024QZB7;A0A024QZ91;Q8WWM7;H3BSK9;H3BUF6 A0A024QZC0 180 188 ATXN2L Ataxin-2-like protein yes no 2 0.0031169 75.738 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3048 14 3126 8006 12520 12520 1 EIETTGQIMHR SQKDEESSEGTHHAKEIETTGQIMHRAENR HHAKEIETTGQIMHRAENRKKFLRSIIKTT K E I H R A 0 1 0 0 0 1 2 1 1 2 0 0 1 0 0 0 2 0 0 0 0 0 11 0 1313.6398 Q6IEH8;Q6KC79 Q6IEH8 1709 1719 NIPBL Nipped-B-like protein yes no 2 1.4568E-05 87.476 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3049 1843 3127 8007 12521 12521 1695 1 EIETYHNLLEGGQEDFESSGAGK QEYSLLLSIKMRLEKEIETYHNLLEGGQED LEGGQEDFESSGAGKIGLGGRGGSGGSYGR K E I G K I 1 0 1 1 0 1 5 4 1 1 2 1 0 1 0 2 1 0 1 0 0 0 23 0 2509.1245 CON__P35527;P35527;K7EQQ3 CON__P35527 450 472 KRT9 Keratin, type I cytoskeletal 9 yes no 3 8.1118E-124 208.28 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2354200000 2354200000 0 1711000000 1711000000 0 643220000 643220000 0 + 3050 1165 3128 8008;8009;8010;8011;8012 12522;12523;12524;12525;12526;12527;12528;12529 12522 8 EIEYEVVR HTSQVLVDKSLKGWKEIEYEVVRDAYGNCV KSLKGWKEIEYEVVRDAYGNCVTVCNMENL K E I V R D 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0 8 0 1035.5237 Q53SY7;F8VPD4;P27708;Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209;Q5R207 Q53SY7 525 532 CAD;CPS1 CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase;Carbamoyl-phosphate synthase [ammonia], mitochondrial no no 2 0.0083405 79.116 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3051 1259;148 3129 8013 12530 12530 1 EIFDIAFPDEQAEALAVER FITEGLEVHFVEHYREIFDIAFPDEQAEAL IAFPDEQAEALAVER_______________ R E I E R - 4 1 0 2 0 1 4 0 0 2 1 0 0 2 1 0 0 0 0 1 0 0 19 0 2162.0532 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0 K7EJE8 811 829 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 1.0866E-16 116.96 3 3.9087 4.0275 8.2116 2 Median 3.9087 4.0275 8.2116 2 0 Median NaN NaN NaN 0 0 Median 41696000 6966800 34729000 41696000 6966800 34729000 0 0 0 3052 946 3130 8014;8015;8016 12531;12532;12533;12534;12535;12536 12534 6 EIFEQPESVVNTMR LQQIMKGNFSSFMQKEIFEQPESVVNTMRG KEIFEQPESVVNTMRGRVNFDDYTVNLGGL K E I M R G 0 1 1 0 0 1 3 0 0 1 0 0 1 1 1 1 1 0 0 2 0 0 14 0 1677.8032 Q06210 Q06210 346 359 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.0019196 56.404 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3053 1688 3131 8017 12537 12537 1506 1 EIFITFR GVEDGQTVRMPVGKREIFITFRVQKSPVFR VRMPVGKREIFITFRVQKSPVFRRDGADIH R E I F R V 0 1 0 0 0 0 1 0 0 2 0 0 0 2 0 0 1 0 0 0 0 0 7 0 924.5069 Q59E88;Q53G26;Q96EY1;B3KM81 Q59E88 324 330 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 0.03394 63.148 1 1.4164 1.4298 NaN 1 Median 1.4164 1.4298 NaN 1 0 Median NaN NaN NaN 0 0 Median 10249000 4536400 5712300 10249000 4536400 5712300 0 0 0 3054 1786 3132 8018 12538 12538 1 EIFLSQPILLELEAPLK QLTENEIRGLCLKSREIFLSQPILLELEAP FLSQPILLELEAPLKICGDIHGQYYDLLRL R E I L K I 1 0 0 0 0 1 3 0 0 2 5 1 0 1 2 1 0 0 0 0 0 0 17 0 1952.1234 P62136;A0A140VJS9;B3KXM2;E9PMD7;F5H1L6;F5H037;F8WE71;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 P62136 44 60 PPP1CA;PPP1CB;PPP1CC;HEL-S-80p Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 3.9665E-45 168.76 2 2 1.8704 1.8301 18.728 4 Median 1.3883 1.5641 14.577 2 0 Median 2.4372 2.0596 9.0723 2 0 Median 317840000 124520000 193320000 184410000 86079000 98331000 133430000 38441000 94990000 3055 1632;343;1633 3133 8019;8020;8021;8022 12539;12540;12541;12542;12543 12539 5 EIFLTVPVGGGESLR IYNISGNGSPLADSKEIFLTVPVGGGESLR EIFLTVPVGGGESLRLLASDLQRHSIAQLD K E I L R L 0 1 0 0 0 0 2 3 0 1 2 0 0 1 1 1 1 0 0 2 0 0 15 0 1572.8512 Q53HL2;A8K7A2 Q53HL2 226 240 CDCA8 Borealin yes no 2 5.7507E-07 100.93 2 2 1.1903 1.1993 2.8665 4 Median 1.0088 1.1755 1.9684 2 0 Median 1.4079 1.2243 2.0509 2 0 Median 773630000 367190000 406440000 500310000 252760000 247550000 273320000 114430000 158890000 3056 1789 3134 8023;8024;8025;8026 12544;12545;12546;12547;12548;12549;12550;12551;12552 12547 9 EIFNFVLK CNFTKSMEEDPQTSREIFNFVLKAIRPQID EDPQTSREIFNFVLKAIRPQIDLKRYAVPS R E I L K A 0 0 1 0 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 8 0 1008.5644 P78527;B4DL41 P78527 247 254 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0060143 88.643 2 2 0.72518 0.87434 57.246 4 Linear 0.6284 0.70299 9.4378 2 0 Median 0.33358 0.26325 9.7206 2 0 Median 202290000 125640000 76649000 173650000 103630000 70024000 28636000 22012000 6625000 3057 1665 3135 8027;8028;8029;8030 12553;12554;12555;12556;12557;12558;12559;12560 12558 8 EIGDYIR THYTPLACGSNPLKREIGDYIRTGFINLDK CGSNPLKREIGDYIRTGFINLDKPSNPSSH R E I I R T 0 1 0 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 7 0 864.43413 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 82 88 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.014426 100.07 2 1 0.95617 1.1156 34.26 3 Plateau 0.93497 1.066 8.7545 2 0 Median 0.73039 0.59471 NaN 1 0 Median 284710000 150990000 133720000 275030000 145410000 129610000 9686200 5576500 4109700 3058 1398 3136 8031;8032;8033 12561;12562;12563;12564 12562 4 EIGGLTQVNK GRKPLDLYRLYVSVKEIGGLTQVNKNKKWR YVSVKEIGGLTQVNKNKKWRELATNLNVGT K E I N K N 0 0 1 0 0 1 1 2 0 1 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1057.5768 A0A0S2Q0B1;O14497;H0Y488;A0A1B0GTU5;A0A087WUV6;Q96TA9;Q4LE49 A0A0S2Q0B1 1060 1069 ARID1A;ARID1A variant protein AT-rich interactive domain-containing protein 1A yes no 2 0.026708 52.867 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8727400 8727400 0 8727400 8727400 0 0 0 0 3059 544 3137 8034 12565 12565 1 EIGLLADEIEIYGK ISRGQTPKAVDVLAKEIGLLADEIEIYGKS KEIGLLADEIEIYGKSKAKVRLSVLERLKD K E I G K S 1 0 0 1 0 0 3 2 0 3 2 1 0 0 0 0 0 0 1 0 0 0 14 0 1561.8239 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 315 328 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 3.8972E-05 94.767 2 1.3593 1.3636 20.191 2 Median 1.3593 1.3636 20.191 2 0 Median NaN NaN NaN 0 0 Median 11933000 4434400 7498600 11933000 4434400 7498600 0 0 0 3060 418 3138 8035;8036 12566;12567;12568;12569 12569 4 EIGLLSEEVELYGETK ISRSCKPKPIGKLAREIGLLSEEVELYGET IGLLSEEVELYGETKAKVLLSALERLKHRP R E I T K A 0 0 0 0 0 0 5 2 0 1 3 1 0 0 0 1 1 0 1 1 0 0 16 0 1807.9091 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 337 352 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00015124 63.091 1 2 1.089 1.0046 23.831 2 Median 1.146 1.1889 NaN 1 0 Median 1.0348 0.84878 NaN 1 0 Median 12968000 6192400 6775300 9856800 4783300 5073500 3110900 1409100 1701800 3061 196 3139 8037;8038;8039 12570;12571;12572 12570 3 EIGQSVDEVEK AEAWLLGQEPYLSSREIGQSVDEVEKLIKR LSSREIGQSVDEVEKLIKRHEAFEKSAATW R E I E K L 0 0 0 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 0 2 0 0 11 0 1231.5932 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;B4DIF8 D6W5C0 1958 1968 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 1.0988E-05 108.43 2 1.8025 1.9008 3.9053 2 Median 1.8025 1.9008 3.9053 2 0 Median NaN NaN NaN 0 0 Median 37155000 13204000 23952000 37155000 13204000 23952000 0 0 0 3062 415 3140 8040;8041 12573;12574;12575;12576 12573 4 EIGWTDVGGWTGQGGSILGTK AIYDGFDGFAKGQIKEIGWTDVGGWTGQGG VGGWTGQGGSILGTKRVLPGKYLEEIATQM K E I T K R 0 0 0 1 0 1 1 7 0 2 1 1 0 0 0 1 3 2 0 1 0 0 21 0 2118.0382 Q01813;Q8WTZ9;O14943;H0Y3Y3 Q01813 460 480 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 1.8326E-08 79.652 2 2.2125 2.2961 5.4605 2 Median 2.2125 2.2961 5.4605 2 0 Median NaN NaN NaN 0 0 Median 32741000 10924000 21817000 32741000 10924000 21817000 0 0 0 3063 1677 3141 8042;8043 12577;12578;12579;12580;12581 12577 5 EIHQFNR LEPLNERKHNLLASKEIHQFNRDVEDEILW KHNLLASKEIHQFNRDVEDEILWVGERMPL K E I N R D 0 1 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 7 0 942.46716 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1400 1406 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.013114 103.71 1 1.4971 1.5489 NaN 1 Median 1.4971 1.5489 NaN 1 0 Median NaN NaN NaN 0 0 Median 13826000 6555800 7270600 13826000 6555800 7270600 0 0 0 3064 415 3142 8044 12582 12582 1 EIIDLVLDR DAANNYARGHYTIGKEIIDLVLDRIRKLAD HYTIGKEIIDLVLDRIRKLADRCTGLQGFL K E I D R I 0 1 0 2 0 0 1 0 0 2 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1084.6128 B3KT06;B3KPS3;P68363;A8JZY9;F8VVB9;F8VRZ4;F8VS66;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;Q71U36;B4DQK4;F8VQQ4 B3KT06 78 86 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain no no 2 1.0629E-05 126.52 4 2 1.5152 1.8462 34.649 4 Linear 1.4658 1.7208 2.7128 2 0 Median 1.133 0.95439 10.919 2 0 Median 1153900000 466610000 687330000 1113900000 447410000 666470000 40060000 19200000 20860000 3065 922;1257;1869 3143 8045;8046;8047;8048;8049;8050 12583;12584;12585;12586;12587;12588;12589;12590;12591;12592;12593 12585 11 EIIDPVLDR DAANNYARGHYTIGKEIIDPVLDRIRKLSD HYTIGKEIIDPVLDRIRKLSDQCTGLQGFL K E I D R I 0 1 0 2 0 0 1 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1068.5815 P68366;C9JEV8;C9JQ00;C9JJQ8 P68366 113 121 TUBA4A Tubulin alpha-4A chain yes no 2 0.0018407 80.165 2 1 1.4198 1.6436 25.821 3 Median 1.511 1.6801 3.1062 2 0 Median 1.2733 1.076 NaN 1 0 Median 116890000 46126000 70768000 112040000 43900000 68138000 4856100 2225500 2630500 3066 1659 3144 8051;8052;8053 12594;12595;12596;12597;12598 12596 5 EIIEVLQK LLYLLSPRDPAHTVREIIEVLQKGDGNAHS DPAHTVREIIEVLQKGDGNAHSKKDTEVRR R E I Q K G 0 0 0 0 0 1 2 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 970.5699 Q15397;B2RDG4 Q15397 457 464 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.0049823 91.906 1 2 0.87305 0.80346 6.058 3 Plateau 0.76767 0.80346 NaN 1 0 Median 0.90759 0.73338 4.2291 2 0 Median 48343000 26474000 21869000 34495000 19276000 15219000 13848000 7197600 6650600 3067 1761 3145 8054;8055;8056 12599;12600;12601;12602;12603 12599 5 EIILMDLVRPQDTYQFFVK GDPLQPTRVKDPETREIILMDLVRPQDTYQ MDLVRPQDTYQFFVKHGELKVYKTLDTPFF R E I V K H 0 1 0 2 0 2 1 0 0 2 2 1 1 2 1 0 1 0 1 2 0 0 19 1 2354.2344 Q03188 Q03188 834 852 CENPC Centromere protein C yes yes 3 5.0673E-06 61.692 2 0.78554 0.86269 3.7579 2 Median 0.78554 0.86269 3.7579 2 0 Median NaN NaN NaN 0 0 Median 27316000 15400000 11916000 27316000 15400000 11916000 0 0 0 3068 1681 3146 8057;8058 12604;12605;12606;12607 12606 1495 4 EIINTYTEAVQTVDPFK HEWHKRVALHQGRPREIINTYTEAVQTVDP INTYTEAVQTVDPFKATGKPHTLWVAFAKF R E I F K A 1 0 1 1 0 1 2 0 0 2 0 1 0 1 1 0 3 0 1 2 0 0 17 0 1966.9888 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 224 240 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 6.8438E-09 93.959 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10898000 0 10898000 10898000 0 10898000 0 0 0 3069 1838 3147 8059;8060 12608;12609 12609 2 EIIPGNLEDPSEFETPALSTK YTVKSHSLFLTQKDKEIIPGNLEDPSEFET LEDPSEFETPALSTKDSGNLYDSEIQNVLG K E I T K D 1 0 1 1 0 0 4 1 0 2 2 1 0 1 3 2 2 0 0 0 0 0 21 0 2286.1267 Q562F6;B7Z7S9 Q562F6 752 772 SGOL2 Shugoshin-like 2 yes no 2 1.2578E-08 82.102 2 2 1.4381 1.2892 21.526 4 Median 1.0502 1.075 4.8241 2 0 Median 1.9595 1.5502 5.1981 2 0 Median 57742000 23483000 34259000 30699000 14123000 16576000 27043000 9360100 17683000 3070 1795 3148 8061;8062;8063;8064 12610;12611;12612;12613;12614;12615;12616 12616 7 EIIQDVTLHDLDVANAR EEYVPLPKGDVHKKKEIIQDVTLHDLDVAN IQDVTLHDLDVANARPQGGQDILSMMGQLM K E I A R P 2 1 1 3 0 1 1 0 1 2 2 0 0 0 0 0 1 0 0 2 0 0 17 0 1920.9905 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4G5;H7C4I3 B5BUB1 233 249 RUVBL1 RuvB-like 1 yes no 3 1.8948E-07 94.487 2 1 0.89461 0.87479 7.2881 3 Median 0.84678 0.85256 10.091 2 0 Median 1.0404 0.87479 NaN 1 0 Median 44918000 25770000 19148000 41825000 24131000 17694000 3092500 1639200 1453300 3071 1076 3149 8065;8066;8067 12617;12618;12619;12620;12621;12622;12623;12624 12622 8 EIISEMGELGVLGPTIK MPRILLANRNEVFHREIISEMGELGVLGPT ISEMGELGVLGPTIKGSSDSPASTPLVAGI R E I I K G 0 0 0 0 0 0 3 3 0 3 2 1 1 0 1 1 1 0 0 1 0 0 17 0 1784.9594 K7ES74;K7EKT3;A0A1D6XXQ4;A0A1L3A5T2;A0A1L3A5U7;A0A024R7F9;Q92947 K7ES74 95 111 GCDH Glutaryl-CoA dehydrogenase, mitochondrial yes no 2 0.0078114 43.382 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3072 223 3150 8068 12625 12625 165 1 EILAELTGR YRAHGFTFTRGLSVREILAELTGRKGGCAK RGLSVREILAELTGRKGGCAKGKGGSMHMY R E I G R K 1 1 0 0 0 0 2 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1000.5553 Q5JPU0;Q5JPT9;Q5JPU1;Q53GE3;A0A024RBX9;P08559;A5YPB6 Q5JPU0 133 141 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha;Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 2 0.00051514 102.51 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3073 349 3151 8069 12626 12626 1 EILETLIK GIFAYLNYHVPRTRREILETLIKGLQRLEY HVPRTRREILETLIKGLQRLEYRGYDSAGV R E I I K G 0 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 8 0 957.57465 Q06210 Q06210 18 25 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.0088194 79.469 2 2.9116 2.8985 NaN 1 Median 2.9116 2.8985 NaN 1 0 Median NaN NaN NaN 0 0 Median 25807000 3147400 22660000 25807000 3147400 22660000 0 0 0 3074 1688 3152 8070;8071 12627;12628;12629 12628 3 EILFYR DFQFFPPRLFELLEKEILFYRKTIGYKVPR PRLFELLEKEILFYRKTIGYKVPRNPELPN K E I Y R K 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 6 0 839.45414 O60264;B7ZAX9;B4DZC0 O60264 788 793 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.057087 80.317 1 5.1114 4.459 NaN 1 Median NaN NaN NaN 0 0 Median 5.1114 4.459 NaN 1 0 Median 46176000 7322200 38854000 0 0 0 46176000 7322200 38854000 3075 1391 3153 8072 12630 12630 1 EILGTAQSVGCNVDGR MRHRSLARELSGTIKEILGTAQSVGCNVDG ILGTAQSVGCNVDGRHPHDIIDDINSGAVE K E I G R H 1 1 1 1 1 1 1 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 16 0 1674.7995 P30050;Q59FI9 P30050 131 146 RPL12 60S ribosomal protein L12 yes no 2 1.1521E-44 169.23 4 2 0.95365 0.97796 2.7357 4 Median 0.83965 0.98647 0.47653 2 0 Median 1.0968 0.95186 3.0777 2 0 Median 980890000 509290000 471600000 819770000 435830000 383930000 161120000 73451000 87669000 3076 1532 3154 8073;8074;8075;8076;8077;8078 12631;12632;12633;12634;12635;12636;12637;12638;12639;12640;12641;12642;12643;12644;12645 12637 15 EILLEMIHSIQNSQDMR VEALREAATAVEQEKEILLEMIHSIQNSQD LLEMIHSIQNSQDMRQISDGEREELNLTAN K E I M R Q 0 1 1 1 0 2 2 0 1 3 2 0 2 0 0 2 0 0 0 0 0 0 17 0 2056.0081 B3KN59;B3KM36;O95816 B3KN59 54 70 BAG2 BAG family molecular chaperone regulator 2 yes no 3 0.00028298 56.851 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13250000 0 13250000 13250000 0 13250000 0 0 0 3077 900 3155 8079 12646 12646 724;725 1 EILPFTDRK KMNKQTFPEHCSLCKEILPFTDRKQAVCSN HCSLCKEILPFTDRKQAVCSNGHIWLRCFL K E I R K Q 0 1 0 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 9 1 1117.6132 Q9UKN8;B3KNH2 Q9UKN8 752 760 GTF3C4 General transcription factor 3C polypeptide 4 yes no 3 0.026822 30.569 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3296700 3296700 0 3296700 3296700 0 0 0 0 3078 2107 3156 8080 12647 12647 1 EILQNTTSLK FVGKDQVTKLILPLKEILQNTTSLKLARKV ILPLKEILQNTTSLKLARKVHETLRRITVG K E I L K L 0 0 1 0 0 1 1 0 0 1 2 1 0 0 0 1 2 0 0 0 0 0 10 0 1145.6292 O75691 O75691 1986 1995 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0035929 63.816 1 1 1.4968 1.4167 7.7006 2 Median 1.3518 1.496 NaN 1 0 Median 1.6574 1.3416 NaN 1 0 Median 62236000 24620000 37616000 57870000 23300000 34570000 4365800 1319200 3046600 3079 1412 3157 8081;8082 12648;12649 12648 2 EILSEENEMQPNGK HAVSKFGKKDSLGTREILSEENEMQPNGKV REILSEENEMQPNGKVFKKLILGNYKWMNY R E I G K V 0 0 2 0 0 1 4 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 14 0 1616.7352 Q8TAF6;O60488;D6RF95;D6RFW9;D6RDA8;D6RD96 Q8TAF6 59 72 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.001396 57.348 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3080 1394 3158 8083 12650 12650 1071 1 EILSEVER KDPKACTILLRGASKEILSEVERNLQDAMQ LLRGASKEILSEVERNLQDAMQVCRNVLLD K E I E R N 0 1 0 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 973.50803 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368 B4DUR8 337 344 CCT3 T-complex protein 1 subunit gamma yes no 2 0.031214 51.43 1 1.2475 1.271 NaN 1 Median 1.2475 1.271 NaN 1 0 Median NaN NaN NaN 0 0 Median 14812000 6737200 8075300 14812000 6737200 8075300 0 0 0 3081 951 3159 8084 12651 12651 1 EILVGDVGQTVDDPYATFVK CLSEDKKNIILEEGKEILVGDVGQTVDDPY DVGQTVDDPYATFVKMLPDKDCRYALYDAT K E I V K M 1 0 0 3 0 1 1 2 0 1 1 1 0 1 1 0 2 0 1 4 0 0 20 0 2165.0892 G3V1A4;V9HWI5;E9PK25;P23528;E9PP50;E9PLJ3;B4E112;E9PQB7;E9PS23 G3V1A4 37 56 CFL1;HEL-S-15 Cofilin-1 yes no 2 2.678E-40 151.44 2 2 4.4107 4.1845 35.15 4 Median 4.977 5.5977 2.9228 2 0 Median 3.8304 3.0569 6.175 2 0 Median 188530000 31351000 157170000 149740000 23689000 126050000 38790000 7662300 31127000 3082 1242 3160 8085;8086;8087;8088 12652;12653;12654;12655;12656;12657;12658;12659 12654 8 EILVGDVGVTITDPFK CLSADKKCIIVEEGKEILVGDVGVTITDPF ILVGDVGVTITDPFKHFVGMLPEKDCRYAL K E I F K H 0 0 0 2 0 0 1 2 0 2 1 1 0 1 1 0 2 0 0 3 0 0 16 0 1701.9189 B7Z9M9;V9HWA6;P60981;F6RFD5 B7Z9M9 37 52 HEL32;DSTN Destrin yes no 2 1.4592E-12 122.39 2 5.6717 5.769 NaN 1 Median 5.6717 5.769 NaN 1 0 Median NaN NaN NaN 0 0 Median 28092000 2622100 25470000 28092000 2622100 25470000 0 0 0 3083 1108 3161 8089;8090 12660;12661;12662;12663 12661 4 EINDCIGGTVLNISK KVPVSVNLLSKNLSREINDCIGGTVLNISK EINDCIGGTVLNISKSGSCSAIRIGHVGMQ R E I S K S 0 0 2 1 1 0 1 2 0 3 1 1 0 0 0 1 1 0 0 1 0 0 15 0 1631.8189 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87 O76021 193 207 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.5447E-98 216.68 2 1 0.53592 0.47237 NaN 1 Median NaN NaN NaN 0 0 Median 0.53592 0.47237 NaN 1 0 Median 562200000 147860000 414350000 302900000 0 302900000 259310000 147860000 111450000 3084 1415 3162 8091;8092;8093 12664;12665;12666;12667 12664 4 EINITSALAEK IMHNLIFQMYDEGEREINITSALAEKIKVN EGEREINITSALAEKIKVNWTPEINKEHLL R E I E K I 2 0 1 0 0 0 2 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 11 0 1187.6398 A6NHR9;J3KTL8 A6NHR9 1080 1090 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.00303 68.893 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14120000 14120000 0 14120000 14120000 0 0 0 0 3085 684 3163 8094 12668 12668 1 EINSDQATQGNISSDR ISVTPVKNIDPVKNKEINSDQATQGNISSD INSDQATQGNISSDRGKKRTVTAAGAENIQ K E I D R G 1 1 2 2 0 2 1 1 0 2 0 0 0 0 0 3 1 0 0 0 0 0 16 0 1733.7816 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1220 1235 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 6.7789E-110 233.37 2 1 0.63871 0.64028 2.6183 3 Median 0.63422 0.65039 2.2154 2 0 Median 0.75009 0.62718 NaN 1 0 Median 33814000 18599000 15215000 30130000 16712000 13418000 3684000 1887200 1796800 3086 1270 3164 8095;8096;8097 12669;12670;12671;12672;12673 12671 5 EIPETTPIEEVK EKVRPSHKRCIVILREIPETTPIEEVKGLF ILREIPETTPIEEVKGLFKSENCPKVISCE R E I V K G 0 0 0 0 0 0 4 0 0 2 0 1 0 0 2 0 2 0 0 1 0 0 12 0 1383.7133 Q71RC2;Q8TBL5;A0A087WTL9;Q6P4E2;Q96J85 Q71RC2 205 216 LARP4 La-related protein 4 yes no 2 0.00019323 77.379 2 2 2.0936 1.7846 18.886 4 Linear 2.0779 2.1109 2.8861 2 0 Median 1.8481 1.5244 1.4223 2 0 Median 33454000 12062000 21392000 30079000 10952000 19127000 3375400 1110300 2265100 3087 1868 3165 8098;8099;8100;8101 12674;12675;12676;12677;12678 12675 5 EIPEVLVDPR GVAAPGAPAAAPPAKEIPEVLVDPRSRRRY APPAKEIPEVLVDPRSRRRYVRGRFLGKGG K E I P R S 0 1 0 1 0 0 2 0 0 1 1 0 0 0 2 0 0 0 0 2 0 0 10 0 1165.6343 P53350;B2R841;Q58A51;I3L387 P53350 39 48 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 0.0084824 56.013 2 0.89387 1.0343 NaN 1 Median 0.89387 1.0343 NaN 1 0 Median NaN NaN NaN 0 0 Median 96479000 36424000 60055000 96479000 36424000 60055000 0 0 0 3088 1604 3166 8102;8103 12679;12680;12681 12680 3 EIPSATQSPISK TLGVQRPKLEKKDAKEIPSATQSPISKKRK DAKEIPSATQSPISKKRKKKGFLPETKKRK K E I S K K 1 0 0 0 0 1 1 0 0 2 0 1 0 0 2 3 1 0 0 0 0 0 12 0 1256.6612 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1156 1167 MYBBP1A Myb-binding protein 1A yes no 2 1.3111E-12 129.28 2 2 1.0789 1.0537 13.699 4 Median 1.0372 1.1609 0.35575 2 0 Median 1.1425 0.92181 5.5744 2 0 Median 174140000 90516000 83622000 154720000 81505000 73210000 19422000 9010600 10412000 3089 1997 3167 8104;8105;8106;8107 12682;12683;12684;12685;12686;12687;12688;12689 12685 8 EIPSHVLSK PGQFAENETNEVNFREIPSHVLSKVCMYFT NEVNFREIPSHVLSKVCMYFTYKVRYTNSS R E I S K V 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 2 0 0 0 1 0 0 9 0 1008.5604 E5RHG8;A0A024R7Y5;Q15369 E5RHG8 64 72 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2 0.015809 54.436 1 1.9143 2.0552 NaN 1 Median 1.9143 2.0552 NaN 1 0 Median NaN NaN NaN 0 0 Median 21420000 7867500 13553000 21420000 7867500 13553000 0 0 0 3090 238 3168 8108 12690 12690 1 EIQAPASADIR DVLEQRGRLQKLVAKEIQAPASADIRVLRG LVAKEIQAPASADIRVLRGHQLSITCLVVT K E I I R V 3 1 0 1 0 1 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1169.6041 O43818 O43818 130 140 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 2.37E-12 140.17 2 2 0.80241 0.92663 0.39869 3 Plateau 0.79338 0.92663 0.43646 2 0 Median 1.0799 0.92259 NaN 1 0 Median 579480000 326280000 253200000 523240000 290290000 232950000 56240000 35998000 20242000 3091 1389 3169 8109;8110;8111;8112 12691;12692;12693;12694;12695;12696;12697 12692 7 EIQELEQLLSSER KLEEKMESQGIMKNKEIQELEQLLSSERQE NKEIQELEQLLSSERQELDCLRKQYLSENE K E I E R Q 0 1 0 0 0 2 4 0 0 1 3 0 0 0 0 2 0 0 0 0 0 0 13 0 1572.7995 P49454 P49454 1676 1688 CENPF Centromere protein F yes yes 2 1.3915E-23 155.48 3 0.71101 0.7174 4.479 2 Median 0.71101 0.7174 4.479 2 0 Median NaN NaN NaN 0 0 Median 20179000 11142000 9036800 20179000 11142000 9036800 0 0 0 3092 1581 3170 8113;8114;8115 12698;12699;12700;12701;12702;12703 12698 6 EIQEPDPTYEEK EMEEIFDDASPGKQKEIQEPDPTYEEKMQT KQKEIQEPDPTYEEKMQTDRANRFEYLLKQ K E I E K M 0 0 0 1 0 1 4 0 0 1 0 1 0 0 2 0 1 0 1 0 0 0 12 0 1476.662 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 72 83 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 6.2163E-18 143.96 2 2 3.6105 3.5167 27.788 4 Median 2.5027 2.8467 0.06306 2 0 Median 5.4808 4.5794 7.51 2 0 Median 406460000 102900000 303560000 313600000 87560000 226040000 92859000 15336000 77522000 3093 1391 3171 8116;8117;8118;8119 12704;12705;12706;12707;12708;12709;12710;12711;12712 12704 9 EIQQFSQGTR RQRKPQRKLQSTLLREIQQFSQGTRKSATD STLLREIQQFSQGTRKSATDTSAKWRLPHC R E I T R K 0 1 0 0 0 3 1 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 10 0 1192.5836 B4DJ73;B4DHL5;B4E228;Q6NW34;B4E1X5;B4DUV5 B4DJ73 301 310 C3orf17 Uncharacterized protein C3orf17 yes no 2 0.0021458 67.897 2 2.8399 2.8224 NaN 1 Median 2.8399 2.8224 NaN 1 0 Median NaN NaN NaN 0 0 Median 8542000 3094700 5447300 8542000 3094700 5447300 0 0 0 3094 977 3172 8120;8121 12713;12714 12713 2 EIQTAVR SRLAHYNKRSTITSREIQTAVRLLLPGELA KRSTITSREIQTAVRLLLPGELAKHAVSEG R E I V R L 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 7 0 815.45012 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;A0A024RCL8;B4DR52;P57053;O60814;Q0D2M2;Q16778;P33778;P23527;A0A024RCJ2;P06899 B2R4S9 94 100 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J no no 2 0.009599 126.24 4 0.85535 0.87562 18.111 3 Median 0.85535 0.87562 18.111 3 0 Median NaN NaN NaN 0 0 Median 1012200000 538200000 474020000 1012200000 538200000 474020000 0 0 0 3095 34;1513 3173 8122;8123;8124;8125 12715;12716;12717;12718;12719 12715 5 EIQTLLSHK EDALELTEKLDQDWKEIQTLLSHKTPKSEN LDQDWKEIQTLLSHKTPKSENRDKKEKPKP K E I H K T 0 0 0 0 0 1 1 0 1 1 2 1 0 0 0 1 1 0 0 0 0 0 9 0 1067.5975 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 227 235 NOP14 Nucleolar protein 14 yes no 2 2.1383E-05 117.04 1 1 1.195 1.1229 5.9989 2 Median 1.0306 1.1716 NaN 1 0 Median 1.3857 1.0763 NaN 1 0 Median 180170000 90295000 89871000 165330000 84313000 81021000 14832000 5981500 8850500 3096 790 3174 8126;8127 12720;12721;12722 12720 3 EIQVQHPAAK MGGIVMTNDGNAILREIQVQHPAAKSMIEI NAILREIQVQHPAAKSMIEISRTQDEEVGD R E I A K S 2 0 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 0 0 1 0 0 10 0 1119.6037 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368;Q5SZX6;E9PRC8;Q5SZX9 B4DUR8 24 33 CCT3 T-complex protein 1 subunit gamma yes no 2;3 1.3648E-07 122.52 3 1.6287 1.6306 35.209 2 Median 1.6287 1.6306 35.209 2 0 Median NaN NaN NaN 0 0 Median 18491000 5309300 13181000 18491000 5309300 13181000 0 0 0 3097 951 3175 8128;8129;8130 12723;12724;12725 12725 2 EIREDLPVNTSK GEDNSTAQDTEELEKEIREDLPVNTSKTRP LEKEIREDLPVNTSKTRPKQEKAFSLKTIS K E I S K T 0 1 1 1 0 0 2 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 12 1 1399.7307 A0A024R9D2;Q86UE4;E5RJU9 A0A024R9D2 468 479 MTDH Protein LYRIC yes no 3 0.05514 23.092 1 0.44073 0.37635 NaN 1 Median NaN NaN NaN 0 0 Median 0.44073 0.37635 NaN 1 0 Median 1469300 980370 488910 0 0 0 1469300 980370 488910 3098 275 3176 8131 12726 12726 1 EIRPTYAGSK SKYAELLAIIEELGKEIRPTYAGSKSAMER EELGKEIRPTYAGSKSAMERLKRG______ K E I S K S 1 1 0 0 0 0 1 1 0 1 0 1 0 0 1 1 1 0 1 0 0 0 10 1 1120.5877 F5GZF0;E9PKR4;Q6IAV4;O14519;O75956 F5GZF0 48 57 CDK2AP1;CDK2AP2;DOC-1R Cyclin-dependent kinase 2-associated protein;Cyclin-dependent kinase 2-associated protein 1;Cyclin-dependent kinase 2-associated protein 2 yes no 2;3 1.9042E-21 164.33 4 1 0.71494 0.77018 17.014 4 Median 0.64612 0.75456 20.66 3 0 Median 0.94907 0.78613 NaN 1 0 Median 156880000 97991000 58890000 152990000 96025000 56969000 3887200 1966300 1920900 3099 1245 3177 8132;8133;8134;8135;8136 12727;12728;12729;12730;12731;12732 12729 6 EISDGDVIISGNK VVSLNITSLGLRSLKEISDGDVIISGNKNL LKEISDGDVIISGNKNLCYANTINWKKLFG K E I N K N 0 0 1 2 0 0 1 2 0 3 0 1 0 0 0 2 0 0 0 1 0 0 13 0 1345.6725 Q59FL8;Q504U8;E7BSV0;E9PFD7;F2YGG7;Q2TTR7;A9CB80;A8K2T7;P00533;B7Z2I3;A2VCQ7;Q147T7;Q68GS6;F1JTL6 Q59FL8 326 338 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor yes no 2 0.0024253 69.672 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11196000 0 11196000 11196000 0 11196000 0 0 0 3100 713 3178 8137;8138 12733;12734;12735 12734 3 EISEASENIYSDVR KMPGQSVRKKTRKAKEISEASENIYSDVRG KEISEASENIYSDVRGLSQNQQIPQNSVTP K E I V R G 1 1 1 1 0 0 3 0 0 2 0 0 0 0 0 3 0 0 1 1 0 0 14 0 1610.7424 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1781 1794 AHCTF1 Protein ELYS yes no 2 5.7545E-99 237.68 3 2 1.4977 1.482 9.806 4 Median 1.2131 1.3461 6.5282 2 0 Median 1.8404 1.5736 1.416 2 0 Median 151360000 63361000 88002000 99110000 44782000 54328000 52253000 18579000 33674000 3101 1945 3179 8139;8140;8141;8142;8143 12736;12737;12738;12739;12740;12741;12742;12743 12738 8 EISEGDEVEVYSR PFNEVRLPPPPDIKKEISEGDEVEVYSRAN KKEISEGDEVEVYSRANDQEPCGWWLAKVR K E I S R A 0 1 0 1 0 0 4 1 0 1 0 0 0 0 0 2 0 0 1 2 0 0 13 0 1510.6787 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;C9JAJ4 A0A0F7KYT8 58 70 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 8.8873E-14 119.27 2 2 0.82419 0.85024 NaN 1 Median 0.82419 0.85024 NaN 1 0 Median NaN NaN NaN 0 0 Median 82565000 53154000 29411000 71014000 53154000 17860000 11551000 0 11551000 3102 531 3180 8144;8145;8146;8147 12744;12745;12746;12747 12745 4 EISESTPVEEVEALFK EKVRPNQNRCIVILREISESTPVEEVEALF ISESTPVEEVEALFKGDNLPKFINCEFAYN R E I F K G 1 0 0 0 0 0 5 0 0 1 1 1 0 1 1 2 1 0 0 2 0 0 16 0 1805.8935 Q92615 Q92615 242 257 LARP4B La-related protein 4B yes yes 2 2.0001E-18 124.38 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9055100 0 9055100 9055100 0 9055100 0 0 0 3103 1949 3181 8148 12748 12748 1 EISFAYEVLSNPEK EYHPDKNPNAGDKFKEISFAYEVLSNPEKR KEISFAYEVLSNPEKRELYDRYGEQGLREG K E I E K R 1 0 1 0 0 0 3 0 0 1 1 1 0 1 1 2 0 0 1 1 0 0 14 0 1624.7985 A0A024R6S1;O60884;T2DN57;T2DPK5 A0A024R6S1 49 62 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 9.3689E-05 86.313 1 1 1.1443 1.0732 63.885 2 Median 1.5233 1.6861 NaN 1 0 Median 0.85958 0.68315 NaN 1 0 Median 52184000 22047000 30137000 45607000 18140000 27467000 6576800 3906800 2670000 3104 208 3182 8149;8150 12749;12750;12751;12752;12753 12749 5 EISGLWNELDSLK PPHEELLKVISEREKEISGLWNELDSLKDA EKEISGLWNELDSLKDAVEHQRKKNNDLRE K E I L K D 0 0 1 1 0 0 2 1 0 1 3 1 0 0 0 2 0 1 0 0 0 0 13 0 1502.7617 A0A024R663;Q86UP2;G3V4Y7;B7Z6P3;H0YJV5 A0A024R663 1007 1019 KTN1 Kinectin yes no 2 0.0029083 53.08 2 0.51583 0.42214 NaN 1 Median NaN NaN NaN 0 0 Median 0.51583 0.42214 NaN 1 0 Median 7651600 5542100 2109500 0 0 0 7651600 5542100 2109500 3105 197 3183 8151;8152 12754;12755 12755 2 EISHVLNFLIR RRGVLANALAGRDEKEISHVLNFLIRNLSQ RDEKEISHVLNFLIRNLSQPRFAPVLINAA K E I I R N 0 1 1 0 0 0 1 0 1 2 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1339.7612 Q8TED0;H0Y8P4 Q8TED0 417 427 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2;3 0.00032567 87.308 6 3 1.0064 0.89643 6.2932 5 Median 0.86743 0.91618 7.1188 2 0 Median 1.111 0.89643 7.2255 3 0 Median 110180000 63286000 46894000 61044000 39911000 21132000 49137000 23375000 25762000 3106 1936 3184 8153;8154;8155;8156;8157;8158;8159;8160;8161 12756;12757;12758;12759;12760;12761;12762;12763;12764;12765;12766;12767 12766 12 EITALAPSTMK GGTTMYPGIADRMQKEITALAPSTMKIKII RMQKEITALAPSTMKIKIIAPPERKYSVWI K E I M K I 2 0 0 0 0 0 1 0 0 1 1 1 1 0 1 1 2 0 0 0 0 0 11 0 1160.6111 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;A8K3K1;Q7Z7J6;A6NL76;Q13707;B4DUI8;B3KPP5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;F1BXA6;A4UCT3;A5GZ75;Q9UE89;P63261;B4E3A4;B4DVQ0 P63261 316 326 ACTA2;ACTG2;ACTA1;ACTC1;PS1TP5BP1;ACTB;ACTG1 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 2.0388E-08 118.71 2 6 2.7882 2.3602 28.718 7 Median 2.8184 3.3908 1.3271 2 0 Median 2.7882 2.2963 19.391 5 0 Median 7229100000 1904800000 5324300000 6892800000 1798900000 5093900000 336300000 105870000 230430000 3107 1624;1656;1100 3185;3186 8162;8163;8164;8165;8166;8167;8168;8169 12768;12769;12770;12771;12772;12773;12774;12775;12776;12777;12778;12779;12780;12781;12782;12783;12784;12785;12786;12787 12769 840 20 EITCDNFDETVK ISPEEKFVITTTSRKEITCDNFDETVKDGV SRKEITCDNFDETVKDGVTLYLLQSVNQLL K E I V K D 0 0 1 2 1 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 12 0 1469.6344 A6NHR9 A6NHR9 81 92 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.00021804 82.417 1 1 1.1078 0.99075 6.2052 2 Median 0.94191 0.94822 NaN 1 0 Median 1.3028 1.0352 NaN 1 0 Median 19232000 7887100 11345000 16112000 6571500 9540100 3120700 1315600 1805100 3108 684 3187 8170;8171 12788;12789;12790 12788 3 EITDIAAAAESLQPK SGPPTPGPTTLGPKKEITDIAAAAESLQPK EITDIAAAAESLQPKGYTLATTQVKTPIPL K E I P K G 4 0 0 1 0 1 2 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 15 0 1555.8094 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4;G1UI29;A0A087X0E3 A0A0A0MS59 386 400 SRCAP Helicase SRCAP yes no 2 0.0048644 38.58 1 2 0.97015 0.7878 45.598 3 Median 0.51488 0.51959 NaN 1 0 Median 1.2667 1.0088 34.976 2 0 Median 9652200 5185100 4467100 4840000 3330500 1509500 4812200 1854600 2957600 3109 476 3188 8172;8173;8174 12791;12792;12793 12793 2 EITEGDEVEVYSR PFGDVRLPPPADYNKEITEGDEVEVYSRAN NKEITEGDEVEVYSRANEQEPCGWWLARVR K E I S R A 0 1 0 1 0 0 4 1 0 1 0 0 0 0 0 1 1 0 1 2 0 0 13 0 1524.6944 P51116;I3L1Z2 P51116 68 80 FXR2 Fragile X mental retardation syndrome-related protein 2 yes no 2 6.8805E-09 118.28 2 2 1.2844 1.2398 6.742 4 Median 1.2217 1.2782 1.6677 2 0 Median 1.3792 1.1619 6.5223 2 0 Median 68834000 30891000 37943000 57142000 25588000 31554000 11692000 5303200 6389000 3110 1593 3189 8175;8176;8177;8178 12794;12795;12796;12797;12798;12799;12800;12801 12796 8 EITGSSLIQK VKGFFYVSLLLDILKEITGSSLIQKTDSDE LDILKEITGSSLIQKTDSDEEVAMLLDTVQ K E I Q K T 0 0 0 0 0 1 1 1 0 2 1 1 0 0 0 2 1 0 0 0 0 0 10 0 1074.5921 Q86XI2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 931 940 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.00047569 82.426 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24557000 0 24557000 21695000 0 21695000 2862800 0 2862800 3111 1887 3190 8179;8180;8181;8182 12802;12803;12804;12805 12804 4 EITTFEGCK YVTFSMLEDVQRALKEITTFEGCKINVTVA VQRALKEITTFEGCKINVTVAKKKLRNKTK K E I C K I 0 0 0 0 1 0 2 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 9 0 1083.4907 A0A024R753;Q9NW13;B4DJ90;C9JE21;C9JAA9;A0A0S2Z5E5 A0A024R753 64 72 RBM28 RNA-binding protein 28 yes no 2 0.0073059 62.107 1 1 1.3567 1.2797 37.521 2 Median 1.4878 1.6685 NaN 1 0 Median 1.2372 0.98145 NaN 1 0 Median 58055000 24412000 33643000 54911000 23045000 31866000 3144100 1367200 1776900 3112 214 3191 8183;8184 12806;12807 12806 2 EIVHIQAGQCGNQIGTK ______________________________ VHIQAGQCGNQIGTKFWEVISDEHGIDPAG R E I T K F 1 0 1 0 1 3 1 3 1 3 0 1 0 0 0 0 1 0 0 1 0 0 17 0 1851.9261 Q9BUF5;B4DP54;K7ESM5;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 Q9BUF5 3 19 TUBB6 Tubulin beta-6 chain no no 3 0.013393 33.343 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10327000 0 10327000 10327000 0 10327000 0 0 0 3113 2004 3192 8185 12808 12808 1 EIVHLQAGQCGNQIGAK ______________________________ VHLQAGQCGNQIGAKFWEVISDEHGIDPTG R E I A K F 2 0 1 0 1 3 1 3 1 2 1 1 0 0 0 0 0 0 0 1 0 0 17 0 1821.9156 Q8IZ29;P68371;Q8N6N5;Q8IWP6;B4DFH6;M0R2D3;M0QY85;M0QZL7;B4DNW1;M0R0X0;M0QY37;M0QX14;M0R2T4;M0R042;M0QYM7;P04350;B4DJ43;M0R278 Q8IZ29 3 19 TUBB2C;TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain no no 2;3 4.1918E-25 166.7 4 3 1.444 1.7662 5.2031 4 Linear 1.444 1.7662 5.2031 4 0 Linear NaN NaN NaN 0 0 Median 1369000000 543200000 825820000 1338300000 543200000 795140000 30678000 0 30678000 3114 1660;1441;1353 3193 8186;8187;8188;8189;8190;8191;8192 12809;12810;12811;12812;12813;12814;12815;12816;12817;12818;12819 12815 11 EIVHTFK FAAYGNVFSAFARNKEIVHTFKGHKAEIHF FSAFARNKEIVHTFKGHKAEIHFLQPFGDH K E I F K G 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 1 0 0 7 0 872.4756 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 97 103 WDR36 WD repeat-containing protein 36 yes no 2 0.0037696 134.06 2 2 1.0841 1.0433 5.255 4 Median 0.95513 1.0914 2.0579 2 0 Median 1.2564 1.0003 1.6244 2 0 Median 373270000 189230000 184040000 339840000 174890000 164950000 33422000 14332000 19090000 3115 486 3194 8193;8194;8195;8196 12820;12821;12822;12823;12824;12825;12826;12827 12821 8 EIVLADVIDNDSWR LVDMKIEFGVDVTTKEIVLADVIDNDSWRL KEIVLADVIDNDSWRLWPSGDRSQQKDKQS K E I W R L 1 1 1 3 0 0 1 0 0 2 1 0 0 0 0 1 0 1 0 2 0 0 14 0 1643.8155 E9PBS1;A0A024RD93;P22234;D6RF62;B4DGX3 E9PBS1 202 215 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 3.3219E-10 135.66 2 1 0.93967 0.8994 9.3923 3 Median 0.87247 0.89347 13.272 2 0 Median 1.0156 0.8994 NaN 1 0 Median 21061000 9300400 11761000 19839000 8744600 11095000 1221500 555860 665660 3116 380 3195 8197;8198;8199 12828;12829;12830;12831;12832;12833;12834;12835 12834 8 EIVNNIR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP KIPNFDVREIVNNIRRLMDGEEPLPMLPSY R E I I R R 0 1 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 7 0 856.47667 P11388 P11388 871 877 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.013902 106.29 4 2 1.2814 1.1188 NaN 1 Median NaN NaN NaN 0 0 Median 1.2814 1.1188 NaN 1 0 Median 911290000 54946000 856340000 774790000 0 774790000 136490000 54946000 81549000 3117 1471 3196 8200;8201;8202;8203;8204;8205 12836;12837;12838;12839;12840;12841 12838 6 EIVNNIRR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP IPNFDVREIVNNIRRLMDGEEPLPMLPSYK R E I R R L 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 8 1 1012.5778 P11388 P11388 871 878 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.057961 49.358 2 1.514 1.3306 7.7658 2 Median NaN NaN NaN 0 0 Median 1.514 1.3306 7.7658 2 0 Median 15731000 6139000 9592000 0 0 0 15731000 6139000 9592000 3118 1471 3197 8206;8207 12842;12843 12842 2 EIVQQSLSVGNFAAR FPVPSPYLLSDKEVREIVQQSLSVGNFAAR EIVQQSLSVGNFAARLLVRLFPELFTAENL R E I A R L 2 1 1 0 0 2 1 1 0 1 1 0 0 1 0 2 0 0 0 2 0 0 15 0 1617.8475 Q5T5X7 Q5T5X7 728 742 BEND3 BEN domain-containing protein 3 yes yes 2 9.1703E-05 79.82 1 1 1.0857 0.94206 NaN 1 Median NaN NaN NaN 0 0 Median 1.0857 0.94206 NaN 1 0 Median 6426100 5602300 823770 4828900 4828900 0 1597200 773430 823770 3119 1822 3198 8208;8209 12844;12845;12846 12844 3 EIVVIHQDPEALK VIRDRKTIPIKYPLKEIVVIHQDPEALKDI LKEIVVIHQDPEALKDIKSLEKYIIEELNV K E I L K D 1 0 0 1 0 1 2 0 1 2 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1489.814 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2;Q7L4K8 Q59G75 866 878 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2;3 0.0026504 54.343 3 1 1.3042 1.1838 79.459 2 Median 1.9826 2.0763 NaN 1 0 Median 0.85797 0.67493 NaN 1 0 Median 51012000 5404300 45607000 47016000 3180700 43835000 3996000 2223700 1772400 3120 1561 3199 8210;8211;8212;8213 12847;12848;12849;12850 12848 4 EIVVLETLEDIDK EFTAFLHPEEFEHMKEIVVLETLEDIDKNG MKEIVVLETLEDIDKNGDGFVDQDEYIADM K E I D K N 0 0 0 2 0 0 3 0 0 2 2 1 0 0 0 0 1 0 0 2 0 0 13 0 1514.808 V9HW95;Q15293;E9PP27;Q5J7V8 V9HW95 205 217 HEL-S-84;RCN1 Reticulocalbin-1 yes no 2 0.0020578 71.896 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5676400 0 5676400 5676400 0 5676400 0 0 0 3121 1757 3200 8214 12851 12851 1 EIVVTDYSDQNLQELEK GPTIYQLLSACESFKEIVVTDYSDQNLQEL VVTDYSDQNLQELEKWLKKEPEAFDWSPVV K E I E K W 0 0 1 2 0 2 3 0 0 1 2 1 0 0 0 1 1 0 1 2 0 0 17 0 2021.9793 Q6FH49;P40261 Q6FH49 80 96 NNMT Nicotinamide N-methyltransferase yes no 2 6.807E-07 87.001 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10481000 0 10481000 10481000 0 10481000 0 0 0 3122 1557 3201 8215;8216 12852;12853;12854 12854 3 EIWELIGIPEDQR EESIVCLQKALNHLREIWELIGIPEDQRLQ LREIWELIGIPEDQRLQRTEVVKKHIKELL R E I Q R L 0 1 0 1 0 1 3 1 0 3 1 0 0 0 1 0 0 1 0 0 0 0 13 0 1596.8148 A0A024RC67;O43663;H0YM42;H0YLA0 A0A024RC67 24 36 PRC1 Protein regulator of cytokinesis 1 yes no 2 4.8344E-21 139.86 2 2 1.0827 0.8991 6.5821 2 Median NaN NaN NaN 0 0 Median 1.0827 0.8991 6.5821 2 0 Median 57965000 48957000 9008700 39172000 39172000 0 18794000 9784900 9008700 3123 353 3202 8217;8218;8219;8220 12855;12856;12857;12858;12859;12860 12856 6 EIYDDLQALHTDDPLTWDYVAR LSIAQLFDFAKDLQKEIYDDLQALHTDDPL ALHTDDPLTWDYVARRELEIESQTEEQPTT K E I A R R 2 1 0 5 0 1 1 0 1 1 3 0 0 0 1 0 2 1 2 1 0 0 22 0 2648.2395 B3KQ21;Q9NYH9;B3KX32;B4DSL9;B7Z9G4 B3KQ21 258 279 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 3 4.4727E-09 76.186 2 1.3206 1.1142 3.6508 2 Median NaN NaN NaN 0 0 Median 1.3206 1.1142 3.6508 2 0 Median 41380000 17115000 24266000 0 0 0 41380000 17115000 24266000 3124 925 3203 8221;8222 12861;12862;12863;12864 12864 4 EIYENMAPGENK PKPLKFLRPHYGKLKEIYENMAPGENKRFA KLKEIYENMAPGENKRFAADIISVLAMTMS K E I N K R 1 0 2 0 0 0 3 1 0 1 0 1 1 0 1 0 0 0 1 0 0 0 12 0 1393.6184 Q59EG8;Q13200;B4DM22;Q9NSM5;C9JPC0;H7C2Q3 Q59EG8 113 124 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 7.4633E-13 127.76 2 3.3482 3.4173 12.534 2 Median 3.3482 3.4173 12.534 2 0 Median NaN NaN NaN 0 0 Median 30357000 7163500 23193000 30357000 7163500 23193000 0 0 0 3125 1707 3204 8223;8224 12865;12866;12867;12868;12869;12870 12865 1538 6 EKEEEELMEK DFALLQKVRAEIASKEKEEEELMEKPQKET EIASKEKEEEELMEKPQKETKKDEDPENKI K E K E K P 0 0 0 0 0 0 6 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 10 1 1292.5806 Q9UK43;Q95HA6;B2R5Y4;Q13123;Q9Y3Z5;D6REL4;Q9H4P6;E7EQZ7 Q9UK43 182 191 CSA2;IK;DKFZp564B112 Protein Red yes no 2 0.00096894 75.509 1 1.0457 1.1584 NaN 1 Median 1.0457 1.1584 NaN 1 0 Median NaN NaN NaN 0 0 Median 5357500 2467800 2889700 5357500 2467800 2889700 0 0 0 3126 838 3205 8225 12871 12871 666 1 EKEELEEIR DREKEMEADERDRKREKEELEEIRQRLLAE ERDRKREKEELEEIRQRLLAEGHPDPDAEL R E K I R Q 0 1 0 0 0 0 5 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 1 1173.5877 P49756 P49756 539 547 RBM25 RNA-binding protein 25 yes yes 2 0.019677 85.731 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2770800 2770800 0 2770800 2770800 0 0 0 0 3127 1587 3206 8226 12872 12872 1 EKEELVLELQTAK DNIKELELEVINLQKEKEELVLELQTAKKD QKEKEELVLELQTAKKDANQAKLSERRRKR K E K A K K 1 0 0 0 0 1 4 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 13 1 1528.8348 Q59HG1;O95239;Q6PKB2;B4DYE2 Q59HG1 577 589 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 1.1963E-05 115.57 2 4 1.5267 1.2183 4.9452 4 Linear NaN NaN NaN 0 0 Median 1.5267 1.2183 4.9452 4 0 Linear 44812000 22259000 22553000 6321900 6321900 0 38490000 15937000 22553000 3128 1803 3207 8227;8228;8229;8230;8231;8232 12873;12874;12875;12876;12877;12878;12879;12880 12873 8 EKEMEADERDRKR KYYRGSALQKRLRDREKEMEADERDRKREK DREKEMEADERDRKREKEELEEIRQRLLAE R E K K R E 1 3 0 2 0 0 4 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 13 4 1690.8057 P49756 P49756 526 538 RBM25 RNA-binding protein 25 yes yes 2 0.011482 44.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39923000 39923000 0 39923000 39923000 0 0 0 0 3129 1587 3208 8233 12881 12881 1 EKIIDQVYR IPVKVLNCDTISQVKEKIIDQVYRGQPCSC TISQVKEKIIDQVYRGQPCSCWPRPDSVVL K E K Y R G 0 1 0 1 0 1 1 0 0 2 0 1 0 0 0 0 0 0 1 1 0 0 9 1 1162.6346 O15031;A0A087WU36;Q16293;Q3LIB1 O15031 1492 1500 PLXNB2;MM1;Nbla00445 Plexin-B2 yes no 3 0.023441 31.494 1 0.41267 0.49575 NaN 1 Median 0.41267 0.49575 NaN 1 0 Median NaN NaN NaN 0 0 Median 71144000 48597000 22547000 71144000 48597000 22547000 0 0 0 3130 1373 3209 8234 12882;12883 12882 2 EKLEAEMK YRKDQEALEAVKRLKEKLEAEMKKLNYEEN EAVKRLKEKLEAEMKKLNYEENKEESLLEK K E K M K K 1 0 0 0 0 0 3 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 8 1 976.48993 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 459 466 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.054766 72.879 1 2.1198 1.8218 NaN 1 Median NaN NaN NaN 0 0 Median 2.1198 1.8218 NaN 1 0 Median 3643500 1246200 2397300 0 0 0 3643500 1246200 2397300 3131 69 3210 8235 12884 12884 1 EKLKARRNR QDGSPYMRSMKQISKEKLKARRNRTAFEEV MKQISKEKLKARRNRTAFEEVEEDLRLSLH K E K N R T 1 3 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 9 4 1169.7105 Q6P158;Q59G60;H7C109;B4DKW2 Q6P158 759 767 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 1 0.029791 30.185 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5480500 5480500 0 5480500 5480500 0 0 0 0 3132 1850 3211 8236 12885 12885 1 EKPDIFQLVSVK TLAQAEDSVFVIVNKEKPDIFQLVSVKLPK VNKEKPDIFQLVSVKLPKSSSQEVEAKELS K E K V K L 0 0 0 1 0 1 1 0 0 1 1 2 0 1 1 1 0 0 0 2 0 0 12 1 1401.7868 A8K330;Q8IWA0 A8K330 122 133 WDR75 WD repeat-containing protein 75 yes no 2;3 1.4569E-07 119.27 4 0.89592 1.0341 7.4419 4 Median 0.89592 1.0341 7.4419 4 0 Median NaN NaN NaN 0 0 Median 240580000 125730000 114850000 240580000 125730000 114850000 0 0 0 3133 716 3212 8237;8238;8239;8240 12886;12887;12888;12889;12890;12891 12888 6 EKPVDLQNFGLR VPAAQQMLNFPEKNKEKPVDLQNFGLRTDI KNKEKPVDLQNFGLRTDIYSKKTLAKSKGA K E K L R T 0 1 1 1 0 1 1 1 0 0 2 1 0 1 1 0 0 0 0 1 0 0 12 1 1414.7569 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;B4DYF9 Q58EY4 591 602 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 0.02353 53.683 2 0.73279 0.83018 4.9601 2 Median 0.73279 0.83018 4.9601 2 0 Median NaN NaN NaN 0 0 Median 48170000 26000000 22170000 48170000 26000000 22170000 0 0 0 3134 1798 3213 8241;8242 12892;12893;12894 12894 3 EKPYFPIPEEYTFIQNVPLEDR VLCHNCAVEFNFGQKEKPYFPIPEEYTFIQ PEEYTFIQNVPLEDRVRGPKGPEEKKDCEV K E K D R V 0 1 1 1 0 1 4 0 0 2 1 1 0 2 4 0 1 0 2 1 0 0 22 1 2723.3483 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 422 443 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 3 8.6587E-09 74.364 2 2 0.99708 1.0203 41.308 4 Median 1.2374 1.4276 2.1664 2 0 Median 0.79887 0.70119 7.6999 2 0 Median 256360000 137210000 119160000 62999000 30688000 32312000 193360000 106520000 86846000 3135 999 3214 8243;8244;8245;8246 12895;12896;12897;12898;12899;12900;12901;12902;12903 12902 9 EKQDEQVGLPGK DLATFIEELEAVEAKEKQDEQVGLPGKGGK EAKEKQDEQVGLPGKGGKAKGKKTQMAEVL K E K G K G 0 0 0 1 0 2 2 2 0 0 1 2 0 0 1 0 0 0 0 1 0 0 12 1 1326.6779 P11388 P11388 1185 1196 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 8.8471E-22 166.29 2 4 1.4226 1.211 2.118 4 Linear NaN NaN NaN 0 0 Median 1.4226 1.211 2.118 4 0 Linear 138000000 62179000 75823000 27247000 16273000 10973000 110760000 45906000 64850000 3136 1471 3215 8247;8248;8249;8250;8251;8252 12904;12905;12906;12907;12908;12909;12910;12911;12912 12906 9 EKVEEFK TSKAKKLEKQLQKDKEKVEEFKSIPAKSNN EKQLQKDKEKVEEFKSIPAKSNNIINETTT K E K F K S 0 0 0 0 0 0 3 0 0 0 0 2 0 1 0 0 0 0 0 1 0 0 7 1 907.4651 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5;Q6NSG3;Q58F29 Q9NTJ3 423 429 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.054465 119.41 1 1.7633 1.5072 NaN 1 Median NaN NaN NaN 0 0 Median 1.7633 1.5072 NaN 1 0 Median 12339000 4355300 7984100 0 0 0 12339000 4355300 7984100 3137 2070 3216 8253 12913 12913 1 EKYEITEQR RKPRHQEGEIFDTEKEKYEITEQRKIDQKA IFDTEKEKYEITEQRKIDQKAVDSQILPKI K E K Q R K 0 1 0 0 0 1 3 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 9 1 1194.5881 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 238 246 RPL6 60S ribosomal protein L6 yes no 2 5.2285E-11 155.58 2 2 1.0028 1.2642 29.538 4 Linear 0.93927 1.1151 9.4156 2 0 Median 0.77757 0.67526 3.5273 2 0 Median 222800000 119560000 103240000 131180000 69215000 61962000 91622000 50341000 41282000 3138 342 3217 8254;8255;8256;8257 12914;12915;12916;12917;12918;12919;12920;12921;12922 12916 9 ELAAEVEVQDGPNEDGEMFMRPGK YRHLVGVCYTEDEAKELAAEVEVQDGPNED DGPNEDGEMFMRPGKLFDYFPKPYPNSEAA K E L G K L 2 1 1 2 0 1 5 3 0 0 1 1 2 1 2 0 0 0 0 2 0 0 24 1 2647.1894 Q8TBT6;P08574 Q8TBT6 137 160 CYC1 Cytochrome c1, heme protein, mitochondrial yes no 3 5.693E-13 76.186 2 1.634 1.8867 0.37743 2 Median 1.634 1.8867 0.37743 2 0 Median NaN NaN NaN 0 0 Median 61295000 23458000 37837000 61295000 23458000 37837000 0 0 0 3139 1456 3218 8258;8259 12923;12924;12925 12925 1168;1169 3 ELAAGAFGTK DSVEENMLKIQNKKRELAAGAFGTKKTKC_ QNKKRELAAGAFGTKKTKC___________ R E L T K K 3 0 0 0 0 0 1 2 0 0 1 1 0 1 0 0 1 0 0 0 0 0 10 0 963.50255 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527 Q59GQ7 979 988 HLTF Helicase-like transcription factor yes no 2 0.00032006 76.221 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3140 512 3219 8260;8261;8262 12926;12927;12928 12927 3 ELAAGTESQALVSATPR AGSPELVVLDPPWDKELAAGTESQALVSAT AAGTESQALVSATPREDFRVRCTSKRAVTE K E L P R E 4 1 0 0 0 1 2 1 0 0 2 0 0 0 1 2 2 0 0 1 0 0 17 0 1699.8741 Q53FM2;B2R9C5;Q96IY1;Q5SY74;B4E071 Q53FM2 17 33 C1orf48;NSL1 Kinetochore-associated protein NSL1 homolog yes no 2 1.0152E-12 116.51 2 2 0.95723 0.8143 4.6159 3 Median 0.86212 0.87573 NaN 1 0 Median 0.96305 0.80908 0.91084 2 0 Median 26010000 12155000 13855000 15016000 7396700 7619700 10994000 4758300 6235300 3141 866 3220 8263;8264;8265;8266 12929;12930;12931;12932;12933;12934 12930 6 ELAALPK ELDLSLSDLNEVPVKELAALPKATILDLSC DLNEVPVKELAALPKATILDLSCNKLTTLP K E L P K A 2 0 0 0 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 7 0 740.44324 Q96AG4 Q96AG4 34 40 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.026734 77.496 1 0.84965 0.94916 NaN 1 Median 0.84965 0.94916 NaN 1 0 Median NaN NaN NaN 0 0 Median 62980000 30458000 32522000 62980000 30458000 32522000 0 0 0 3142 1958 3221 8267 12935 12935 1 ELAAQLNEEAK RNEMTAEEKRRAHQKELAAQLNEEAKRRLT AHQKELAAQLNEEAKRRLTEQKGEQQIQKA K E L A K R 3 0 1 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1214.6143 Q9Y5B9 Q9Y5B9 480 490 SUPT16H FACT complex subunit SPT16 yes yes 2 1.324E-32 188.3 2 2 0.77441 0.78213 4.948 4 Median 0.68797 0.8164 1.4828 2 0 Median 0.88088 0.75093 1.1744 2 0 Median 1447400000 844520000 602880000 1304900000 768100000 536780000 142530000 76428000 66104000 3143 2148 3222 8268;8269;8270;8271 12936;12937;12938;12939;12940;12941;12942;12943;12944 12937 9 ELAEAMGAQHTAESECEQLVK QLGEAHQAETEVLRRELAEAMGAQHTAESE GAQHTAESECEQLVKEVAAWRERYEDSQQE R E L V K E 4 0 0 0 1 2 5 1 1 0 2 1 1 0 0 1 1 0 0 1 0 0 21 0 2330.0519 A8K394 A8K394 788 808 yes yes 3 0.002013 42.64 1 1 1.6898 1.4277 NaN 1 Median NaN NaN NaN 0 0 Median 1.6898 1.4277 NaN 1 0 Median 1977500 703050 1274400 0 0 0 1977500 703050 1274400 3144 718 3223;3224 8272;8273 12945;12946;12947 12945 554 3 ELAEDGYSGVEVR ADGIFKAELNEFLTRELAEDGYSGVEVRVT TRELAEDGYSGVEVRVTPTRTEIIILATRT R E L V R V 1 1 0 1 0 0 3 2 0 0 1 0 0 0 0 1 0 0 1 2 0 0 13 0 1422.6627 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;H0YEU2;E9PQ96;E9PJH4;E9PK82 P23396 28 40 RPS3 40S ribosomal protein S3 yes no 2 4.6351E-30 196.88 5 3 1.03 0.9883 16.856 6 Median 1.0518 1.1291 15.114 4 0 Median 1.03 0.89061 2.1233 2 0 Median 945350000 448450000 496900000 866120000 408450000 457660000 79232000 39995000 39237000 3145 1511 3225 8274;8275;8276;8277;8278;8279;8280;8281 12948;12949;12950;12951;12952;12953;12954;12955;12956;12957;12958;12959;12960 12954 13 ELAEQLGLSTGEK TTRCPYKDTLGPMQKELAEQLGLSTGEKEK QKELAEQLGLSTGEKEKLPGELEPVQATQN K E L E K E 1 0 0 0 0 1 3 2 0 0 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1373.7038 Q6IAM0;O75821;K7EL20;A8K5K5;B7Z1G0;K7ER90 Q6IAM0 181 193 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 3.4058E-14 136.49 2 1 1.3892 1.3987 7.5798 3 Plateau 1.3249 1.3987 7.1106 2 0 Median 1.5103 1.2678 NaN 1 0 Median 68321000 27482000 40839000 66436000 26811000 39624000 1885300 670760 1214600 3146 1414 3226 8282;8283;8284 12961;12962;12963;12964 12961 3 ELAEQTLNNIK FLPNAPKALIVEPSRELAEQTLNNIKQFKK EPSRELAEQTLNNIKQFKKYIDNPKLRELL R E L I K Q 1 0 2 0 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1271.6721 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 216 226 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 1.1799E-16 141.2 3 2 1.4021 1.1302 12.632 2 Median NaN NaN NaN 0 0 Median 1.4021 1.1302 12.632 2 0 Median 41124000 35957000 5166900 31789000 31789000 0 9334500 4167500 5166900 3147 452 3227 8285;8286;8287;8288;8289 12965;12966;12967;12968;12969;12970;12971;12972 12965 8 ELAFQISK PVNGQVTVLVMCHTRELAFQISKEYERFSK LVMCHTRELAFQISKEYERFSKYMPSVKVS R E L S K E 1 0 0 0 0 1 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 8 0 934.51238 A0A024RCM3;Q13838;A0A0G2JJZ9;Q5STU3;F6WLT2;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;B4DIJ6;F6QYI9;A0A0G2JJL7;F6R6M7;K7EN69;Q7KYK3;A0A140T9K2;A0A140T9N3;O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3;A0A0D9SEM9 O00148 123 130 hCG_2005638;DDX39B;DDX39A;BAT1;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 0.0010076 117.1 2 2 1.1328 1.0591 57.351 4 Median 1.5696 1.7383 1.4817 2 0 Median 0.81184 0.64393 1.7797 2 0 Median 130980000 55371000 75610000 122750000 50631000 72121000 8228900 4739500 3489400 3148 1359;362;521 3228 8290;8291;8292;8293 12973;12974;12975;12976;12977;12978;12979;12980 12974 8 ELAILLGMLDPAEK PTEKLPFPIIDDRNRELAILLGMLDPAEKD RELAILLGMLDPAEKDEKGMPVTARVVFVF R E L E K D 2 0 0 1 0 0 2 1 0 1 4 1 1 0 1 0 0 0 0 0 0 0 14 0 1511.8269 V9HWC7;P30041;A4UCS6 V9HWC7 109 122 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 9.3521E-05 89.805 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4392200 0 4392200 4392200 0 4392200 0 0 0 3149 1527 3229 8294;8295 12981;12982 12981 1294 2 ELAIQIDEVLSHFTK LKKSQVGAIIITPTRELAIQIDEVLSHFTK ELAIQIDEVLSHFTKHFPEFSQILWIGGRN R E L T K H 1 0 0 1 0 1 2 0 1 2 2 1 0 1 0 1 1 0 0 1 0 0 15 0 1741.9251 B4DVE4;F5H5U2;A0A024RBS0;Q8NHQ9;E7EX41;Q8TEC9 B4DVE4 93 107 DDX55 ATP-dependent RNA helicase DDX55 yes no 3 0.014605 37.092 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4308400 0 4308400 4308400 0 4308400 0 0 0 3150 344 3230 8296;8297 12983;12984 12983 2 ELALALQEALEPAVR AGRRRRAPPGGCEERELALALQEALEPAVR ELALALQEALEPAVRLGRYPRAQLEVSALL R E L V R L 4 1 0 0 0 1 3 0 0 0 4 0 0 0 1 0 0 0 0 1 0 0 15 0 1621.9039 Q5RKV6 Q5RKV6 121 135 EXOSC6 Exosome complex component MTR3 yes yes 2 2.673E-47 178.1 2 2 0.82068 0.91012 13.127 4 Linear 0.80925 0.84998 9.4549 2 0 Median 0.82068 0.69213 2.3488 2 0 Median 62427000 33711000 28716000 46247000 24887000 21360000 16180000 8823200 7356300 3151 1814 3231 8298;8299;8300;8301 12985;12986;12987;12988;12989;12990;12991 12986 7 ELALQITK EEGEGPIAVIMTPTRELALQITKECKKFSK VIMTPTRELALQITKECKKFSKTLGLRVVC R E L T K E 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 914.54368 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 456 463 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.039022 47.749 1 1 1.2023 1.0855 0.76256 2 Median 1.0721 1.0913 NaN 1 0 Median 1.3482 1.0796 NaN 1 0 Median 34659000 21374000 13285000 26113000 17520000 8592500 8546100 3854000 4692100 3152 511 3232 8302;8303 12992;12993 12992 2 ELALQSFDTVQK QRSDGPYALVLVPTRELALQSFDTVQKLLK PTRELALQSFDTVQKLLKPFTWIVPGVLMG R E L Q K L 1 0 0 1 0 2 1 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 12 0 1377.714 B4DYZ1;F8WAJ0;Q9H8H2 B4DYZ1 187 198 DDX31 Probable ATP-dependent RNA helicase DDX31 no no 2 0.00021065 80.916 2 1.1385 0.8955 7.6877 2 Median NaN NaN NaN 0 0 Median 1.1385 0.8955 7.6877 2 0 Median 8820100 4054200 4765900 0 0 0 8820100 4054200 4765900 3153 1053;1268 3233 8304;8305 12994;12995;12996 12994 3 ELALQTLK SAQTGARALILSPTRELALQTLKFTKELGK LILSPTRELALQTLKFTKELGKFTGLKTAL R E L L K F 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 914.54368 Q8TDD1;F8VRX4 Q8TDD1 177 184 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.0040438 94.874 2 2 1.1613 1.0914 5.4258 4 Median 0.99479 1.0914 0.84493 2 0 Median 1.4131 1.1434 8.1193 2 0 Median 110610000 55798000 54809000 93789000 48775000 45013000 16818000 7022500 9795700 3154 1933 3234 8306;8307;8308;8309 12997;12998;12999;13000;13001;13002;13003;13004 13000 8 ELALSALLK NRLGELLGHPSFQVKELALSALLKFVQLEG PSFQVKELALSALLKFVQLEGAHPLEKSKW K E L L K F 2 0 0 0 0 0 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 9 0 956.59063 Q9BVI4 Q9BVI4 116 124 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.0034059 71.877 2 2 0.95504 0.88312 13.487 4 Median 0.90863 0.97538 8.7636 2 0 Median 0.99889 0.79994 8.6995 2 0 Median 78360000 41984000 36376000 69432000 37768000 31664000 8927800 4215800 4712000 3155 2007 3235 8310;8311;8312;8313 13005;13006;13007;13008;13009 13005 5 ELAMPGEDLK LTWDMACRIILPPEKELAMPGEDLKFNLIL LPPEKELAMPGEDLKFNLILRQPMILEKGQ K E L L K F 1 0 0 1 0 0 2 1 0 0 2 1 1 0 1 0 0 0 0 0 0 0 10 0 1101.5376 P49411 P49411 396 405 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.0014802 66.27 1 2.4169 2.6084 NaN 1 Median 2.4169 2.6084 NaN 1 0 Median NaN NaN NaN 0 0 Median 41896000 14455000 27441000 41896000 14455000 27441000 0 0 0 3156 1580 3236 8314 13010;13011 13011 1358 2 ELAMQTFGVLK MPRNGTGVLILSPTRELAMQTFGVLKELMT SPTRELAMQTFGVLKELMTHHVHTYGLIMG R E L L K E 1 0 0 0 0 1 1 1 0 0 2 1 1 1 0 0 1 0 0 1 0 0 11 0 1235.6584 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 138 148 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 1.102E-10 118.26 2 5 2.1943 2.2893 57.073 4 Linear 1.7392 1.9668 NaN 1 0 Median 1.4022 1.1121 41.201 3 0 Plateau 186770000 30766000 156000000 163640000 18986000 144650000 23129000 11780000 11349000 3157 303 3237;3238 8315;8316;8317;8318;8319;8320;8321 13012;13013;13014;13015;13016;13017;13018;13019 13014 219 8 ELAPYDENWFYTR KVPEWVDTVKLAKHKELAPYDENWFYTRAA HKELAPYDENWFYTRAASTARHLYLRGGAG K E L T R A 1 1 1 1 0 0 2 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 13 0 1702.7627 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 B0ZBD0 44 56 RPS19 40S ribosomal protein S19 yes no 2 0.00011507 80.979 2 2 1.0628 1.0935 6.6624 4 Linear 0.96489 1.0895 1.0025 2 0 Median 1.1738 0.97411 2.6027 2 0 Median 178720000 87525000 91193000 159970000 79039000 80927000 18751000 8485700 10266000 3158 811 3239 8322;8323;8324;8325 13020;13021;13022;13023;13024;13025;13026;13027 13024 8 ELAQIAGRPTEDEDEK FLAIDAKLTTEEVIKELAQIAGRPTEDEDE LAQIAGRPTEDEDEKEKVADEDDVDNEEAA K E L E K E 2 1 0 2 0 1 4 1 0 1 1 1 0 0 1 0 1 0 0 0 0 0 16 1 1799.8537 B4DDC8;B3KXL8;Q6IAU5;B2R665;O15355 B4DDC8 82 97 PPM1G Protein phosphatase 1G yes no 2 0.0018112 74.46 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3965800 0 3965800 3965800 0 3965800 0 0 0 3159 839 3240 8326 13028 13028 1 ELAQQIEEETIK ESDQGPYAIILAPTRELAQQIEEETIKFGK PTRELAQQIEEETIKFGKPLGIRTVAVIGG R E L I K F 1 0 0 0 0 2 4 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1429.73 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 459 470 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 1.9919E-29 169.93 1 1.1785 1.2443 NaN 1 Median 1.1785 1.2443 NaN 1 0 Median NaN NaN NaN 0 0 Median 35459000 15928000 19531000 35459000 15928000 19531000 0 0 0 3160 63 3241 8327 13029 13029 1 ELAQQIQK LDLKATQALVLAPTRELAQQIQKVVMALGD LVLAPTRELAQQIQKVVMALGDYMGASCHA R E L Q K V 1 0 0 0 0 3 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 956.5291 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3KTB5;J3QL43;J3QR64;E7EQG2;Q14240;J3QLN6;J3QKZ9;B4E047;J3KS25;J3KSN7;D3DSD6 A8K7F6 111 118 EIF4A1;EIF4A2;hCG_1793424 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 1;2 0.00090641 125.86 4 1 2.2568 2.5965 21.814 3 Plateau 2.2568 2.5965 21.814 3 0 Plateau NaN NaN NaN 0 0 Median 304850000 81172000 223680000 304850000 81172000 223680000 0 0 0 3161 770 3242 8328;8329;8330;8331;8332 13030;13031;13032;13033;13034;13035 13033 5 ELAQQVQQVAAEYCR ERGDGPICLVLAPTRELAQQVQQVAAEYCR ELAQQVQQVAAEYCRACRLKSTCIYGGAPK R E L C R A 3 1 0 0 1 4 2 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 15 0 1791.8574 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3QRQ7;J3KRZ1 B4DN41 167 181 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 3.3718E-58 194.39 2 2 1.0734 1.0453 39.199 4 Median 1.2863 1.4565 1.1186 2 0 Median 0.89413 0.73929 3.1829 2 0 Median 152130000 69980000 82152000 124010000 54572000 69434000 28125000 15408000 12718000 3162 1009 3243 8333;8334;8335;8336 13036;13037;13038;13039;13040;13041;13042;13043;13044;13045;13046 13040 11 ELAQQVQQVADDYGK ERGDGPICLVLAPTRELAQQVQQVADDYGK ELAQQVQQVADDYGKCSRLKSTCIYGGAPK R E L G K C 2 0 0 2 0 4 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 15 0 1690.8162 Q59F66;Q92841;B4DZQ7 Q59F66 257 271 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 1.7273E-30 155.48 1 2 0.91907 0.75562 41.444 3 Median 1.405 1.4899 NaN 1 0 Median 0.90168 0.72878 5.1142 2 0 Median 55903000 26740000 29163000 35946000 16725000 19221000 19956000 10015000 9941500 3163 1801 3244 8337;8338;8339 13047;13048;13049;13050;13051;13052 13047 6 ELAQQVTPGDIVSTYGVR YREMHLAEQVTNNLKELAQQVTPGDIVSTY QQVTPGDIVSTYGVRKAMGISIPSPVMENN K E L V R K 1 1 0 1 0 2 1 2 0 1 1 0 0 0 1 1 2 0 1 3 0 0 18 0 1931.9953 Q9NPI1;I3L4V5;A0A024R6Q8 Q9NPI1 595 612 BRD7 Bromodomain-containing protein 7 yes no 2 0.011729 29.937 2 1 1.0158 0.95384 41.174 2 Median 0.70134 0.7129 NaN 1 0 Median 1.4712 1.2762 NaN 1 0 Median 14877000 9872700 5004100 12426000 8821100 3605100 2450600 1051600 1399000 3164 2057 3245 8340;8341;8342 13053;13054;13055 13053 3 ELASCNPVVLEESK FWPGTFTQEVMVRIKELASCNPVVLEESKA KELASCNPVVLEESKALVRCNMKMELEQAN K E L S K A 1 0 1 0 1 0 3 0 0 0 2 1 0 0 1 2 0 0 0 2 0 0 14 0 1573.7658 Q9Y232 Q9Y232 539 552 CDYL Chromodomain Y-like protein yes yes 2 3.7325E-05 95.018 2 2 1.3374 1.2237 5.8183 4 Median 1.2177 1.2237 2.2637 2 0 Median 1.539 1.2179 9.8087 2 0 Median 85050000 36500000 48549000 55633000 24460000 31173000 29417000 12041000 17377000 3165 2121 3246 8343;8344;8345;8346 13056;13057;13058;13059;13060;13061;13062;13063;13064;13065 13057 10 ELASGEYFLK YTPFPPPQPESQIDKELASGEYFLKANQKK SQIDKELASGEYFLKANQKKRQKMEAIKAK K E L L K A 1 0 0 0 0 0 2 1 0 0 2 1 0 1 0 1 0 0 1 0 0 0 10 0 1155.5812 Q13601 Q13601 281 290 KRR1 KRR1 small subunit processome component homolog yes yes 2 8.4089E-06 106.42 2 2 1.1977 0.99348 7.3863 3 Median 0.99809 1.0931 NaN 1 0 Median 1.2035 0.96907 3.5177 2 0 Median 72611000 36107000 36505000 52283000 27061000 25222000 20328000 9045600 11282000 3166 1717 3247 8347;8348;8349;8350 13066;13067;13068;13069;13070;13071;13072 13067 7 ELATNLNVGTSSSAASSLK EIGGLTQVNKNKKWRELATNLNVGTSSSAA NLNVGTSSSAASSLKKQYIQCLYAFECKIE R E L L K K 3 0 2 0 0 0 1 1 0 0 3 1 0 0 0 5 2 0 0 1 0 0 19 0 1848.9429 A0A0S2Q0B1;O14497;H0Y488;A0A1B0GTU5;A0A087WUV6;Q96TA9;Q4LE49;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5;H0Y3S9;H0Y2R3 A0A0S2Q0B1 1075 1093 ARID1A;ARID1A variant protein;ARID1B AT-rich interactive domain-containing protein 1A;AT-rich interactive domain-containing protein 1B yes no 2 1.1811E-06 85.837 1 0.9042 0.92994 NaN 1 Median 0.9042 0.92994 NaN 1 0 Median NaN NaN NaN 0 0 Median 10720000 6018700 4701400 10720000 6018700 4701400 0 0 0 3167 544 3248 8351 13073;13074 13073 2 ELAVQIYEEAR RRKQYPISLVLAPTRELAVQIYEEARKFSY APTRELAVQIYEEARKFSYRSRVRPCVVYG R E L A R K 2 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 11 0 1319.6721 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;A0A024R9A4;O15523;B4DLU5;B4E010 A0A0D9SFB3 277 287 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 5.3777E-12 125.97 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39893000 0 39893000 39893000 0 39893000 0 0 0 3168 522 3249 8352 13075 13075 1 ELAYQTFEVLR TSTDGLGVLIISPTRELAYQTFEVLRKVGK SPTRELAYQTFEVLRKVGKNHDFSAGLIIG R E L L R K 1 1 0 0 0 1 2 0 0 0 2 0 0 1 0 0 1 0 1 1 0 0 11 0 1367.7085 Q13206;Q86VR6;E9PIF2;Q59EC7 Q13206 152 162 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 7.642E-08 113.22 2 0.88065 0.87826 6.1981 2 Median 0.88065 0.87826 6.1981 2 0 Median NaN NaN NaN 0 0 Median 23990000 12060000 11930000 23990000 12060000 11930000 0 0 0 3169 1708 3250 8353;8354 13076;13077;13078;13079 13076 4 ELCQGLGQPGSVLR ELQISNNRLEDAGVRELCQGLGQPGSVLRV RELCQGLGQPGSVLRVLWLADCDVSDSSCS R E L L R V 0 1 0 0 1 2 1 3 0 0 3 0 0 0 1 1 0 0 0 1 0 0 14 0 1512.7719 A0A024RC87;A0A140VJT8;P13489;H0YCR7 A0A024RC87 355 368 RNH1 Ribonuclease inhibitor yes no 2 0.014348 48.004 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5233900 0 5233900 5233900 0 5233900 0 0 0 3170 355 3251 8355;8356 13080;13081 13080 2 ELDALDANDELTPLGR PPPLDAVIEAEHTLRELDALDANDELTPLG LDALDANDELTPLGRILAKLPIEPRFGKMM R E L G R I 2 1 1 3 0 0 2 1 0 0 4 0 0 0 1 0 1 0 0 0 0 0 16 0 1740.853 Q08211;B3KU66 Q08211 838 853 DHX9 ATP-dependent RNA helicase A yes no 2 1.3612E-56 178.1 2 2 1.4487 1.3798 16.304 4 Median 1.3937 1.6288 10.831 2 0 Median 1.4487 1.2551 0.77076 2 0 Median 620430000 274000000 346430000 531730000 236360000 295370000 88696000 37636000 51060000 3171 1691 3252 8357;8358;8359;8360 13082;13083;13084;13085;13086;13087;13088;13089;13090;13091 13084 10 ELDATATVLANR ______________________________ LKRELDATATVLANRQDESEQSRKRLIEQS R E L N R Q 3 1 1 1 0 0 1 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 12 0 1272.6674 P39880;B4DMN0;A0A097ZMP4;A0A097ZMP6;Q13948 P39880 12 23 CUX1;CUX1-RETc;CUX1-RETa Homeobox protein cut-like 1;Protein CASP yes no 2 0.014861 43.297 2 1.592 1.3992 6.1224 2 Median NaN NaN NaN 0 0 Median 1.592 1.3992 6.1224 2 0 Median 2537300 1084500 1452800 0 0 0 2537300 1084500 1452800 3172 1556 3253 8361;8362 13092;13093 13092 2 ELDDATEANEGLSR EEATRANASRRKLQRELDDATEANEGLSRE RELDDATEANEGLSREVSTLKNRLRRGGPI R E L S R E 2 1 1 2 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 14 0 1518.6798 P35580 P35580 1906 1919 MYH10 Myosin-10 yes yes 2 0.00037102 85.288 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3173 1544 3254 8363 13094 13094 1 ELDEEGSDPPLPGR RARELTVQKAEALMRELDEEGSDPPLPGRA RELDEEGSDPPLPGRAQRIRQVLQL_____ R E L G R A 0 1 0 2 0 0 3 2 0 0 2 0 0 0 3 1 0 0 0 0 0 0 14 0 1509.6947 C9JQV0;Q9BRJ6;A0A024R836;H7C0T1;H7C2R9 C9JQV0 169 182 C7orf50;MGC11257 Uncharacterized protein C7orf50 yes no 2 0.062775 23.754 1 0.44825 0.39008 NaN 1 Median NaN NaN NaN 0 0 Median 0.44825 0.39008 NaN 1 0 Median 1532500 940330 592220 0 0 0 1532500 940330 592220 3174 1141 3255 8364 13095 13095 1 ELDEHELDYDEEVPEEPAPAVQEDEAEK DRTSDLRDEASSVTRELDEHELDYDEEVPE PEEPAPAVQEDEAEKAGAEDDEEKGEGTPR R E L E K A 3 0 0 4 0 1 10 0 1 0 2 1 0 0 3 0 0 0 1 2 0 0 28 0 3253.3946 E7ERS3;B4DTK7;Q86VM9 E7ERS3 122 149 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 3 1.8953E-10 50.505 2 1.1774 1.2345 4.4381 2 Median 1.1774 1.2345 4.4381 2 0 Median NaN NaN NaN 0 0 Median 36090000 19437000 16653000 36090000 19437000 16653000 0 0 0 3175 1033 3256 8365;8366 13096;13097;13098;13099;13100;13101;13102 13102 7 ELDELLNCLHPQGIR PKQGQNLWFLCDSQKELDELLNCLHPQGIR ELDELLNCLHPQGIRESQLKERLEKRYQDI K E L I R E 0 1 1 1 1 1 2 1 1 1 4 0 0 0 1 0 0 0 0 0 0 0 15 0 1805.9094 Q9UIG0 Q9UIG0 999 1013 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 8.7268E-11 107.14 2 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69694000 0 69694000 33929000 0 33929000 35765000 0 35765000 3176 2103 3257 8367;8368;8369;8370;8371 13103;13104;13105;13106;13107 13104 5 ELDLSGQGFSEK EGSPFLTQKWCHTLRELDLSGQGFSEKDLE TLRELDLSGQGFSEKDLEQALAAFLSTPGG R E L E K D 0 0 0 1 0 1 2 2 0 0 2 1 0 1 0 2 0 0 0 0 0 0 12 0 1308.6198 Q71RB6;Q8N531 Q71RB6 205 216 FBXL6 F-box/LRR-repeat protein 6 yes no 2 3.0728E-13 123.63 1 1 1.2306 1.0392 NaN 1 Median NaN NaN NaN 0 0 Median 1.2306 1.0392 NaN 1 0 Median 13312000 12235000 1077500 11220000 11220000 0 2092600 1015100 1077500 3177 1867 3258 8372;8373 13108;13109 13108 2 ELDQWIEQLNECK ______________________________ TKELDQWIEQLNECKQLSESQVKSLCEKAK K E L C K Q 0 0 1 1 1 2 3 0 0 1 2 1 0 0 0 0 0 1 0 0 0 0 13 0 1703.7825 Q6I9T8;B3KUN1;P67775;E5RI56 Q6I9T8 9 21 PPP2CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform yes no 2 0.027279 42.743 1 2.1704 2.1564 NaN 1 Median 2.1704 2.1564 NaN 1 0 Median NaN NaN NaN 0 0 Median 8094600 4003700 4090900 8094600 4003700 4090900 0 0 0 3178 948 3259 8374 13110 13110 1 ELDSITPEVLPGWK QYHELVVQARDDFKRELDSITPEVLPGWKG RELDSITPEVLPGWKGMSVSDLADKLSTDD R E L W K G 0 0 0 1 0 0 2 1 0 1 2 1 0 0 2 1 1 1 0 1 0 0 14 0 1582.8243 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 372 385 IMMT MICOS complex subunit MIC60 no no 2 1.9024E-14 131.82 2 2 1.2676 1.1373 40.273 4 Median 0.80624 0.80964 5.1057 2 0 Median 2.066 1.6178 6.8942 2 0 Median 45869000 24319000 21550000 38677000 21731000 16945000 7191800 2587300 4604600 3179 1774;1029;1128 3260 8375;8376;8377;8378 13111;13112;13113;13114;13115;13116;13117 13113 7 ELDSQLNEPR SLTWTLCEALWGHLKELDSQLNEPREYIQI WGHLKELDSQLNEPREYIQILERRRAFSRW K E L P R E 0 1 1 1 0 1 2 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1199.5782 P52948;H7C3P6 P52948 1285 1294 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 6.0556E-08 113.71 2 1.3429 1.3763 4.4582 2 Median 1.3429 1.3763 4.4582 2 0 Median NaN NaN NaN 0 0 Median 31819000 14453000 17366000 31819000 14453000 17366000 0 0 0 3180 1603 3261 8379;8380 13118;13119;13120;13121 13121 4 ELEAELEDERK EQNEEKKRLLIKQVRELEAELEDERKQRAL KQVRELEAELEDERKQRALAVASKKKMEID R E L R K Q 1 1 0 1 0 0 5 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1359.6518 P35580 P35580 1600 1610 MYH10 Myosin-10 yes yes 2 0.026807 51.268 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2662400 0 2662400 2662400 0 2662400 0 0 0 3181 1544 3262 8381 13122 13122 1 ELEAENYHDIK AAYEERVQAVVAVARELEAENYHDIKRITA AVARELEAENYHDIKRITARKDNVIRLWEY R E L I K R 1 0 1 1 0 0 3 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 11 0 1359.6307 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1 D6W5C0 401 411 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 9.7985E-06 105.2 1 2 0.76538 0.77378 NaN 1 Median 0.76538 0.77378 NaN 1 0 Median NaN NaN NaN 0 0 Median 20987000 8092900 12894000 16399000 8092900 8306500 4587800 0 4587800 3182 415 3263 8382;8383;8384 13123;13124;13125;13126 13126 4 ELEANVLATAPDK QRLIEQEEYLNVQVKELEANVLATAPDKKK VKELEANVLATAPDKKKQKLLEENVSAFKT K E L D K K 3 0 1 1 0 0 2 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1369.7089 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 841 853 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 8.8406E-14 122.51 2 2 1.8067 1.5497 25.7 3 Median 0.85371 0.99444 NaN 1 0 Median 1.8195 1.552 0.20818 2 0 Median 513490000 198640000 314850000 367210000 143560000 223650000 146280000 55077000 91204000 3183 2070 3264 8385;8386;8387;8388 13127;13128;13129;13130;13131;13132;13133;13134;13135;13136;13137;13138 13127 12 ELEANVLATAPDKK QRLIEQEEYLNVQVKELEANVLATAPDKKK KELEANVLATAPDKKKQKLLEENVSAFKTE K E L K K K 3 0 1 1 0 0 2 0 0 0 2 2 0 0 1 0 1 0 0 1 0 0 14 1 1497.8039 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 841 854 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 0.0020399 55.261 2 4 1.6817 1.4432 27.392 6 Median 0.79653 0.92811 3.5737 2 0 Median 1.8219 1.5576 10.431 4 0 Median 77126000 39066000 38060000 57545000 32030000 25515000 19581000 7035800 12545000 3184 2070 3265 8389;8390;8391;8392;8393;8394 13139;13140;13141;13142;13143;13144;13145;13146;13147 13143 9 ELEDAQAGSGTIGR QVFEDVQRCHFKRPRELEDAQAGSGTIGRS RELEDAQAGSGTIGRSGVRVEGPLKIRGQV R E L G R S 2 1 0 1 0 1 2 3 0 1 1 0 0 0 0 1 1 0 0 0 0 0 14 0 1402.6688 Q6TGM1;Q6TGM0;P33897 Q6TGM1 89 102 ALD;ABCD1 ATP-binding cassette sub-family D member 1 yes no 2 0.00011569 92.19 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3185 1538 3266 8395;8396 13148;13149 13148 2 ELEDATETADAMNR EEAQRANASRRKLQRELEDATETADAMNRE RELEDATETADAMNREVSSLKNKLRRGDLP R E L N R E 3 1 1 2 0 0 3 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 14 0 1564.6675 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1899 1912 MYH9;FLJ00279 Myosin-9 yes no 2 6.4322E-70 201.56 3 3 2.1119 2.3296 21.909 5 Median 2.0695 2.3267 0.17393 2 0 Median 3.0047 2.5497 30.603 3 0 Median 189280000 59255000 130020000 176560000 55799000 120760000 12721000 3455700 9265600 3186 81 3267;3268 8397;8398;8399;8400;8401;8402 13150;13151;13152;13153;13154;13155;13156;13157;13158;13159;13160 13152 55 11 ELEDFEMKK EANGRETTEVDLLTKELEDFEMKKAAARAV VDLLTKELEDFEMKKAAARAVTGVLASHPN K E L K K A 0 0 0 1 0 0 3 0 0 0 1 2 1 1 0 0 0 0 0 0 0 0 9 1 1167.5482 A0A090N7X1;A0A090N7Y2;Q9UG63;C9JHK9;C9JZV3 A0A090N7X1 59 67 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.0065759 65.246 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10447000 0 10447000 10447000 0 10447000 0 0 0 3187 455 3269 8403 13161 13161 320 1 ELEDLEVDGQK HAKEILHCLKNKYFKELEDLEVDGQKVEVP KYFKELEDLEVDGQKVEVPQPLSWYPEELA K E L Q K V 0 0 0 2 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1273.6038 Q08J23;A0A140T9Y7 Q08J23 101 111 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 2 2.8015E-10 133.57 2 2 0.98744 0.88112 43.227 4 Median 1.2857 1.2803 4.9164 2 0 Median 0.75446 0.60741 4.6846 2 0 Median 55773000 25436000 30337000 50171000 22251000 27920000 5602100 3185200 2416900 3188 1694 3270 8404;8405;8406;8407 13162;13163;13164;13165;13166;13167;13168 13162 7 ELEDSPQENVSVTEIIKPCDDPK KVDPEDTNLNQDSAKELEDSPQENVSVTEI NVSVTEIIKPCDDPKSEAKSVPKPKGKKTK K E L P K S 0 0 1 3 1 1 4 0 0 2 1 2 0 0 3 2 1 0 0 2 0 0 23 1 2641.2429 Q5F1R6 Q5F1R6 426 448 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 3 0.0015564 27.947 2 0.90946 0.78478 1.1895 2 Median NaN NaN NaN 0 0 Median 0.90946 0.78478 1.1895 2 0 Median 7637700 4209200 3428500 0 0 0 7637700 4209200 3428500 3189 1806 3271 8408;8409 13169;13170;13171;13172;13173 13170 5 ELEEIVQPIISK SHQDADIEDFKAKKKELEEIVQPIISKLYG KKKELEEIVQPIISKLYGSAGPPPTGEEDT K E L S K L 0 0 0 0 0 1 3 0 0 3 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1396.7813 V9HWB4;P11021 V9HWB4 622 633 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 1.8475E-12 125.74 2 1 1.5305 1.718 0.90874 2 Median 1.5305 1.718 0.90874 2 0 Median NaN NaN NaN 0 0 Median 150470000 56426000 94040000 146300000 52257000 94040000 4169600 4169600 0 3190 1466 3272 8410;8411;8412 13174;13175;13176;13177;13178 13175 5 ELEEIYMLPR PEDQRRRLEEEERQKELEEIYMLPRMRNCA EERQKELEEIYMLPRMRNCAKQISFNGSEG K E L P R M 0 1 0 0 0 0 3 0 0 1 2 0 1 0 1 0 0 0 1 0 0 0 10 0 1291.6482 O14646;A0A024RC75;O14647;A0A1B0GTU9 O14646 1063 1072 CHD1;CHD2 Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 2 no no 2 2.0835E-06 103.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3191 1366;354 3273 8413 13179 13179 263 1 ELEELR ALLNEKQAASPLEPKELEELRDKNESLTMR QAASPLEPKELEELRDKNESLTMRLHETLK K E L L R D 0 1 0 0 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 6 0 787.40758 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;F5H4J1;Q3SYK8;F5H6Y5;F5GWH6;B4DVW6;A0A024RBM9;Q6ZN12;P06727;Q9BT92;P61129;A8K394;Q4LE64;Q14980;Q15020;B4DYA2;B4DRG9;F8VV04;B4E3R6 Q4LE64 277 282 NUMA1;TCHP;APOA4;ZC3H6;NUMA1 variant protein;SART3 Apolipoprotein A-IV;Trichoplein keratin filament-binding protein;Zinc finger CCCH domain-containing protein 6;Nuclear mitotic apparatus protein 1;Squamous cell carcinoma antigen recognized by T-cells 3 no no 2 0.02889 82.263 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3192 186;1747;718;1748 3274 8414 13180 13180 1 ELEELRDK ALLNEKQAASPLEPKELEELRDKNESLTMR ASPLEPKELEELRDKNESLTMRLHETLKQC K E L D K N 0 1 0 1 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1030.5295 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 277 284 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 4.0567E-05 147.29 2 2 1.116 1.1003 9.9226 4 Median 0.89126 1.032 2.7224 2 0 Median 1.4324 1.2063 6.6553 2 0 Median 76011000 38513000 37498000 60888000 32604000 28284000 15123000 5908900 9214200 3193 186;1747;718 3275 8415;8416;8417;8418 13181;13182;13183;13184 13183 4 ELEEVSPETPVVPATTQR RGPLPTEEQRVYRRKELEEVSPETPVVPAT EVSPETPVVPATTQRTLARPGPEPAPATDE K E L Q R T 1 1 0 0 0 1 4 0 0 0 1 0 0 0 3 1 3 0 0 3 0 0 18 0 1981.0004 Q15149 Q15149 144 161 PLEC Plectin yes yes 2 4.0343E-05 67.252 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11234000 0 11234000 11234000 0 11234000 0 0 0 3194 1754 3276 8419;8420;8421 13185;13186;13187;13188 13186 4 ELEFLSMANVELSSLAR LCVNGEIEGLNDTFKELEFLSMANVELSSL EFLSMANVELSSLARLPSLNKLRKLELSDN K E L A R L 2 1 1 0 0 0 3 0 0 0 4 0 1 1 0 3 0 0 0 1 0 0 17 0 1907.9663 Q53F20;Q9BTT0;Q5TB19;B4E0D5;E9PLC4 Q53F20 43 59 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 6.3382E-10 110.38 2 2.3199 2.355 16.61 2 Median 2.3199 2.355 16.61 2 0 Median NaN NaN NaN 0 0 Median 29177000 8495800 20681000 29177000 8495800 20681000 0 0 0 3195 1784 3277 8422;8423 13189;13190;13191;13192;13193;13194 13192 1651 6 ELEFYLR PGQCGRADGYVLEGKELEFYLRKIKARKGK DGYVLEGKELEFYLRKIKARKGK_______ K E L L R K 0 1 0 0 0 0 2 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 7 0 968.49673 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 194 200 RPS8 40S ribosomal protein S8 yes no 2 0.0099468 114.59 1 2 0.9028 0.78504 1.4751 2 Median NaN NaN NaN 0 0 Median 0.9028 0.78504 1.4751 2 0 Median 286920000 155180000 131740000 0 0 0 286920000 155180000 131740000 3196 1635 3278 8424;8425;8426 13195;13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206 13199 12 ELEGELEGEIR MGSRKQIQKLESRARELEGELEGEIRRSAE SRARELEGELEGEIRRSAEAQRGARRLERC R E L I R R 0 1 0 0 0 0 5 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1272.6198 B3KP05;Q9Y2K3 B3KP05 862 872 MYH15 Myosin-15 yes no 2 0.032581 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4112200 4112200 0 4112200 4112200 0 0 0 0 3197 919 3279 8427 13207 13207 1 ELEGWEPDDDPIEEHK TENEPDLAQCFFCFKELEGWEPDDDPIEEH LEGWEPDDDPIEEHKKHSSGCAFLSVKKQF K E L H K K 0 0 0 3 0 0 5 1 1 1 1 1 0 0 2 0 0 1 0 0 0 0 16 0 1936.8327 B7Z7B9;E7CU85;A0A0B4J1S3;O15392 B7Z7B9 63 78 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 3 0.0025532 34.485 2 1 0.73321 0.81276 17.74 3 Median 0.72193 0.75598 10.241 2 0 Median 1.2179 1.0008 NaN 1 0 Median 82711000 45126000 37585000 73045000 40727000 32318000 9666600 4399500 5267100 3198 498 3280 8428;8429;8430 13208;13209;13210;13211;13212 13208 5 ELEGWEPDDDPIEEHKK TENEPDLAQCFFCFKELEGWEPDDDPIEEH EGWEPDDDPIEEHKKHSSGCAFLSVKKQFE K E L K K H 0 0 0 3 0 0 5 1 1 1 1 2 0 0 2 0 0 1 0 0 0 0 17 1 2064.9276 B7Z7B9;E7CU85;A0A0B4J1S3;O15392 B7Z7B9 63 79 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 3 0.029468 16.306 1 1.1186 0.98121 NaN 1 Median NaN NaN NaN 0 0 Median 1.1186 0.98121 NaN 1 0 Median 1751400 606600 1144800 0 0 0 1751400 606600 1144800 3199 498 3281 8431 13213 13213 0 ELEIESQTEEQPTTK LHTDDPLTWDYVARRELEIESQTEEQPTTK ELEIESQTEEQPTTKQAKAVEVGRKEERCC R E L T K Q 0 0 0 0 0 2 5 0 0 1 1 1 0 0 1 1 3 0 0 0 0 0 15 0 1760.8316 B3KQ21;Q9NYH9;B3KX32;B4DSL9 B3KQ21 281 295 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 2.4328E-71 212.09 2 2 1.2067 1.1589 11.573 4 Median 0.94036 1.0564 1.1079 2 0 Median 1.58 1.2877 2.9237 2 0 Median 250180000 122320000 127860000 197360000 101600000 95758000 52818000 20721000 32097000 3200 925 3282 8432;8433;8434;8435 13214;13215;13216;13217;13218;13219;13220;13221 13217 8 ELEIGQAGSQR QKLRACHTRGLDGIKELEIGQAGSQRAPSA DGIKELEIGQAGSQRAPSAKKPSTGSRYQP K E L Q R A 1 1 0 0 0 2 2 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 11 0 1186.5942 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1302 1312 NCAPD2 Condensin complex subunit 1 yes no 2 1.7427E-12 142.92 2 2 1.1627 1.1664 12.495 4 Median 0.89342 1.0287 6.5775 2 0 Median 1.4582 1.2643 0.22423 2 0 Median 443980000 226400000 217580000 336130000 183600000 152530000 107850000 42796000 65057000 3201 908 3283 8436;8437;8438;8439 13222;13223;13224;13225;13226;13227;13228;13229;13230 13224 9 ELELAHR KDEKSNLKEVLNAVKELELAHRYFSYLSKV KEVLNAVKELELAHRYFSYLSKVGDKMRFD K E L H R Y 1 1 0 0 0 0 2 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 866.46102 A8K6X9;Q6PD62 A8K6X9 785 791 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.022149 97.071 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54486000 0 54486000 54486000 0 54486000 0 0 0 3202 765 3284 8440 13231 13231 1 ELELEVINLQK SQLQPIQYQYQDNIKELELEVINLQKEKEE DNIKELELEVINLQKEKEELVLELQTAKKD K E L Q K E 0 0 1 0 0 1 3 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 11 0 1326.7395 Q59HG1;O95239;Q6PKB2 Q59HG1 566 576 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 1.384E-65 215.88 2 2 1.2629 1.2162 12.094 4 Median 0.971 1.0892 6.5637 2 0 Median 1.5979 1.3256 3.1473 2 0 Median 234900000 108740000 126160000 151010000 76168000 74839000 83898000 32576000 51322000 3203 1803 3285 8441;8442;8443;8444 13232;13233;13234;13235;13236;13237 13234 6 ELELQFDLGNLLASDR EQDEAEKLQRITVHKELELQFDLGNLLASD LELQFDLGNLLASDRNPPTGLRCAGPTPEA K E L D R N 1 1 1 2 0 1 2 1 0 0 5 0 0 1 0 1 0 0 0 0 0 0 16 0 1831.9316 Q15050 Q15050 29 44 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 6.8959E-165 246.3 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53376000 0 53376000 53376000 0 53376000 0 0 0 3204 1750 3286 8445;8446;8447 13238;13239;13240;13241 13240 4 ELELQFDLGNLLASDRNPPTGLR EQDEAEKLQRITVHKELELQFDLGNLLASD GNLLASDRNPPTGLRCAGPTPEAELQALAR K E L L R C 1 2 2 2 0 1 2 2 0 0 6 0 0 1 2 1 1 0 0 0 0 0 23 1 2567.3344 Q15050 Q15050 29 51 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 3 1.8858E-60 174.2 2 0.79795 0.89184 9.3262 2 Median 0.79795 0.89184 9.3262 2 0 Median NaN NaN NaN 0 0 Median 47308000 24032000 23276000 47308000 24032000 23276000 0 0 0 3205 1750 3287 8448;8449 13242;13243;13244;13245;13246 13244 5 ELEMIGFIENNVSK KCQIIYPRQQLLTLRELEMIGFIENNVSKL RELEMIGFIENNVSKLSLLLNDISRKSEGL R E L S K L 0 0 2 0 0 0 3 1 0 2 1 1 1 1 0 1 0 0 0 1 0 0 14 0 1621.8022 Q15645 Q15645 355 368 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.00011358 64.439 1 4.2127 4.2586 NaN 1 Median 4.2127 4.2586 NaN 1 0 Median NaN NaN NaN 0 0 Median 13143000 2573800 10569000 13143000 2573800 10569000 0 0 0 3206 1763 3288 8450 13247 13247 1631 1 ELENIEEHQSVDIATLEDEAQENK KELKMKIRKNISEIRELENIEEHQSVDIAT SVDIATLEDEAQENKSKMKMVEEHMEQQKE R E L N K S 2 0 2 2 0 2 7 0 1 2 2 1 0 0 0 1 1 0 0 1 0 0 24 0 2782.2781 Q96SB8 Q96SB8 726 749 SMC6 Structural maintenance of chromosomes protein 6 yes yes 3 0.00080308 28.93 1 1.3863 1.1138 NaN 1 Median NaN NaN NaN 0 0 Median 1.3863 1.1138 NaN 1 0 Median 7837500 2926400 4911100 0 0 0 7837500 2926400 4911100 3207 1989 3289 8451 13248 13248 1 ELEPEMEFEIEPDK NRVESVEPSENEASKELEPEMEFEIEPDKE KELEPEMEFEIEPDKECKSLSPGKENVSAL K E L D K E 0 0 0 1 0 0 6 0 0 1 1 1 1 1 2 0 0 0 0 0 0 0 14 0 1733.7706 Q9H307;B4DTD4;B4E392 Q9H307 424 437 PNN Pinin yes no 2 5.3636E-07 101.93 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13504000 0 13504000 13504000 0 13504000 0 0 0 3208 2028 3290 8452;8453 13249;13250 13249 1867 2 ELEPFLLR EHGKGREYGYASLHKELEPFLLRRVKKDVE GYASLHKELEPFLLRRVKKDVEKSLPAKVE K E L L R R 0 1 0 0 0 0 2 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 1015.5702 O14646 O14646 689 696 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.0077411 81.635 1 2 0.74261 0.65805 7.4849 3 Median 0.72196 0.72035 NaN 1 0 Median 0.75222 0.63922 4.1068 2 0 Median 23780000 12729000 11051000 16691000 9044200 7647000 7088900 3685000 3403900 3209 1366 3291 8454;8455;8456 13251;13252;13253;13254;13255;13256 13252 6 ELEQDTPDAPPRPTSYYR VSASTTPKLPEVVYRELEQDTPDAPPRPTS QDTPDAPPRPTSYYRYIEKSAEELDEEVEY R E L Y R Y 1 2 0 2 0 1 2 0 0 0 1 0 0 0 4 1 2 0 2 0 0 0 18 1 2133.9967 P55201 P55201 183 200 BRPF1 Peregrin yes yes 3 0.00028997 31.818 3 2.2141 1.9959 12.559 2 Median NaN NaN NaN 0 0 Median 2.2141 1.9959 12.559 2 0 Median 5306700 1611200 3695500 0 0 0 5306700 1611200 3695500 3210 1616 3292 8457;8458;8459 13257;13258;13259 13257 3 ELEQLGR ERWQAVLAQTDVRQRELEQLGRQLRYYRES AQTDVRQRELEQLGRQLRYYRESADPLGAW R E L G R Q 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 843.44503 Q15149 Q15149 1338 1344 PLEC Plectin yes yes 2 0.024839 89.673 1 1.1857 1.2193 NaN 1 Median 1.1857 1.2193 NaN 1 0 Median NaN NaN NaN 0 0 Median 21264000 9289700 11974000 21264000 9289700 11974000 0 0 0 3211 1754 3293 8460 13260 13260 1 ELESQISELQEDLESER EEEAAQKNMALKKIRELESQISELQEDLES ESQISELQEDLESERASRNKAEKQKRDLGE R E L E R A 0 1 0 1 0 2 6 0 0 1 3 0 0 0 0 3 0 0 0 0 0 0 17 0 2032.9437 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;Q99529 A0A024R1N1 1108 1124 MYH9 Myosin-9 yes no 2 4.2194E-45 168.31 2 2 1.8769 1.8143 10.317 4 Median 1.5135 1.7151 0.82776 2 0 Median 2.3705 2.0147 7.6989 2 0 Median 186850000 63159000 123690000 140930000 50309000 90617000 45921000 12850000 33071000 3212 81 3294 8461;8462;8463;8464 13261;13262;13263;13264;13265;13266 13262 6 ELESQVSGLEK QASQAEADQQQTRLKELESQVSGLEKEAIE TRLKELESQVSGLEKEAIELREAVEQQKVK K E L E K E 0 0 0 0 0 1 3 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 11 0 1217.6139 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 991 1001 RRBP1 Ribosome-binding protein 1 yes no 2 6.8436E-08 114.5 1 1 0.8591 0.7699 14.923 2 Median 0.86861 0.85558 NaN 1 0 Median 0.84968 0.69279 NaN 1 0 Median 21529000 10496000 11033000 19643000 9552700 10090000 1886300 943570 942690 3213 471 3295 8465;8466 13267;13268;13269 13267 3 ELESSEDRLDK KKISSELEMLRVKVKELESSEDRLDKTEQS VKVKELESSEDRLDKTEQSLASELEKLKSL K E L D K T 0 1 0 2 0 0 3 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 11 1 1319.6205 A0A024RAC0;Q86V48;E5RFK8;Q05DE3 A0A024RAC0 164 174 LUZP1 Leucine zipper protein 1 yes no 2 2.2956E-05 111.06 1 2.0157 2.251 NaN 1 Median 2.0157 2.251 NaN 1 0 Median NaN NaN NaN 0 0 Median 11554000 3481100 8073400 11554000 3481100 8073400 0 0 0 3214 300 3296 8467 13270;13271 13270 2 ELETVCNDVLSLLDK KKLEKVKAYREKIEKELETVCNDVLSLLDK ELETVCNDVLSLLDKFLIKNCNDFQYESKV K E L D K F 0 0 1 2 1 0 2 0 0 0 4 1 0 0 0 1 1 0 0 2 0 0 15 0 1746.871 A0A024R1K7;Q04917;Q9H4N8;B2R6N6;A2IDB2 A0A024R1K7 92 106 YWHAH 14-3-3 protein eta yes no 2 0.0015275 57.019 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3215 78 3297 8468 13272 13272 1 ELEVCEDVAVR QHEDLAKKSIPALVRELEVCEDVAVRNNVI ALVRELEVCEDVAVRNNVIIVMCDLCIRYT R E L V R N 1 1 0 1 1 0 3 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 11 0 1317.6235 P42695;G3V1A9;Q96FA6 P42695 948 958 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.00015639 94.692 1 2 1.7073 1.4194 35.217 3 Median 0.77651 0.78874 NaN 1 0 Median 1.7154 1.45 3.014 2 0 Median 40274000 18676000 21598000 27740000 14303000 13437000 12534000 4372300 8161900 3216 1565 3298 8469;8470;8471 13273;13274;13275;13276;13277 13274 5 ELEVLLMCNK MLPSGFRKFLVHNVKELEVLLMCNKSYCAE VHNVKELEVLLMCNKSYCAEIAHNVSSKNR K E L N K S 0 0 1 0 1 0 2 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 10 0 1247.6254 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 84 93 RPL32 60S ribosomal protein L32 yes no 2 1.4555E-30 178.87 2 3 1.1696 1.2549 66.367 5 Median 1.1741 1.335 0.64029 2 0 Median 0.49919 0.39143 67.524 3 0 Median 318660000 147600000 171060000 296140000 132810000 163330000 22513000 14788000 7724400 3217 112 3299 8472;8473;8474;8475;8476 13278;13279;13280;13281;13282;13283;13284;13285;13286 13278 96 9 ELEVQHPAAK LEKLFVTNDAATILRELEVQHPAAKMIVMA ATILRELEVQHPAAKMIVMASHMQEQEVGD R E L A K M 2 0 0 0 0 1 2 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1120.5877 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 24 33 CCT8 T-complex protein 1 subunit theta yes no 2 2.8033E-30 179.51 2 3.4506 3.54 14.208 2 Median 3.4506 3.54 14.208 2 0 Median NaN NaN NaN 0 0 Median 24684000 5872700 18812000 24684000 5872700 18812000 0 0 0 3218 1592 3300 8477;8478 13287;13288;13289;13290;13291;13292 13290 6 ELEYFGLSAAILDK SLEYYSFYDDRQKRKELEYFGLSAAILDKN KELEYFGLSAAILDKNFRKAYNYIRIMVME K E L D K N 2 0 0 1 0 0 2 1 0 1 3 1 0 1 0 1 0 0 1 0 0 0 14 0 1567.8134 Q9Y5Q9 Q9Y5Q9 667 680 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 0.00012686 80.69 2 0.9457 0.95507 NaN 1 Median 0.9457 0.95507 NaN 1 0 Median NaN NaN NaN 0 0 Median 9866200 4055800 5810400 9866200 4055800 5810400 0 0 0 3219 2150 3301 8479;8480 13293;13294 13293 2 ELFDVVANPLVNDLIHGK QYSFKQVFGTHTTQKELFDVVANPLVNDLI DVVANPLVNDLIHGKNGLLFTYGVTGSGKT K E L G K N 1 0 2 2 0 0 1 1 1 1 3 1 0 1 1 0 0 0 0 3 0 0 18 0 1992.068 H7BYN4;Q02241;H0YME6;H0YMJ4 H7BYN4 87 104 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 3 0.00025027 40.515 2 0.75066 0.76981 2.0445 2 Median 0.75066 0.76981 2.0445 2 0 Median NaN NaN NaN 0 0 Median 39581000 24182000 15399000 39581000 24182000 15399000 0 0 0 3220 1312 3302 8481;8482 13295;13296;13297;13298;13299;13300 13296 6 ELFGPELFR PPGTGKTSTILAAARELFGPELFRLRVLEL ILAAARELFGPELFRLRVLELNASDERGIQ R E L F R L 0 1 0 0 0 0 2 1 0 0 2 0 0 2 1 0 0 0 0 0 0 0 9 0 1106.576 P35249;C9J8M3;C9JZI1;C9JXZ7;C9JTT7 P35249 94 102 RFC4 Replication factor C subunit 4 yes no 2 0.0016071 83.206 2 2 1.1969 1.2167 26.78 4 Linear 1.1252 1.1363 15.155 2 0 Median 0.86973 0.74346 11.073 2 0 Median 41057000 19218000 21839000 34858000 16218000 18639000 6199900 2999900 3200000 3221 1541 3303 8483;8484;8485;8486 13301;13302;13303;13304;13305;13306;13307 13301 7 ELFLSR QPGVSEQQRHQLKHRELFLSRQFESLPATH QQRHQLKHRELFLSRQFESLPATHIRGKCS R E L S R Q 0 1 0 0 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 6 0 763.42284 A0A024R534;O94776;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8;E7ESY4;Q13330;A0A024R6P5;Q86TR6 A0A024R534 87 92 MTA2;MTA3;tmp_locus_6;MTA1 Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 no no 2 0.0079062 137.5 1 0.76788 0.85287 NaN 1 Median 0.76788 0.85287 NaN 1 0 Median NaN NaN NaN 0 0 Median 71523000 39324000 32199000 71523000 39324000 32199000 0 0 0 3222 168;1223;1221 3304 8487 13308 13308 1 ELFPIQMEGVK LPNPGTFEECHRKCKELFPIQMEGVKLTVN RKCKELFPIQMEGVKLTVNKGLSNHFQVNH K E L V K L 0 0 0 0 0 1 2 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 11 0 1289.669 O96008;K7EJ57 O96008 92 102 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 0.001425 60.717 2 2 2.0332 1.933 40.564 4 Median 2.4755 2.7814 4.2226 2 0 Median 1.7132 1.3794 0.47985 2 0 Median 229080000 65462000 163620000 223860000 63710000 160150000 5221100 1751900 3469100 3223 1433 3305 8488;8489;8490;8491 13309;13310;13311;13312 13309 1124 4 ELFQTPCTDNPTTDEK RKEKAQALEELTGFRELFQTPCTDNPTTDE LFQTPCTDNPTTDEKTTKKILCKSPQSDPA R E L E K T 0 0 1 2 1 1 2 0 0 0 1 1 0 1 2 0 4 0 0 0 0 0 16 0 1894.8255 P46013 P46013 1837 1852 MKI67 Antigen KI-67 yes yes 2 5.0005E-05 83.617 4 2 2.5227 2.4812 29.214 4 Median 1.7189 1.9403 1.3224 2 0 Median 3.7372 3.2146 3.1743 2 0 Median 450760000 137180000 313580000 224480000 89787000 134700000 226280000 47390000 178890000 3224 1569 3306 8492;8493;8494;8495;8496;8497 13313;13314;13315;13316;13317;13318;13319;13320;13321 13314 9 ELFQTPDHTEESTTDDK PKEEAQSLEDLAGFKELFQTPDHTEESTTD FQTPDHTEESTTDDKTTKIACKSPPPESMD K E L D K T 0 0 0 3 0 1 3 0 1 0 1 1 0 1 1 1 4 0 0 0 0 0 17 0 1991.8596 P46013 P46013 2081 2097 MKI67 Antigen KI-67 yes yes 2;3 2.0348E-68 218.5 5 2 1.8971 2.2023 17.82 6 Median 1.8601 2.1714 3.5712 4 0 Median 3.5204 3.0305 1.0319 2 0 Median 1667200000 516150000 1151100000 1433500000 464000000 969510000 233720000 52144000 181580000 3225 1569 3307 8498;8499;8500;8501;8502;8503;8504 13322;13323;13324;13325;13326;13327;13328;13329;13330;13331;13332;13333;13334;13335;13336 13329 15 ELFQTPGHTEEAVAAGK PKEEAQALEDLTGFKELFQTPGHTEEAVAA FQTPGHTEEAVAAGKTTKMPCESSPPESAD K E L G K T 3 0 0 0 0 1 3 2 1 0 1 1 0 1 1 0 2 0 0 1 0 0 17 0 1783.8741 P46013 P46013 1351 1367 MKI67 Antigen KI-67 yes yes 2;3 8.9644E-36 122.75 4 3 1.8395 2.1505 23.6 7 Median 1.8578 2.1644 12.473 4 0 Linear 3.4708 2.9049 1.1729 3 0 Median 922300000 290470000 631840000 665050000 233890000 431160000 257250000 56574000 200680000 3226 1569 3308 8505;8506;8507;8508;8509;8510;8511 13337;13338;13339;13340;13341;13342;13343;13344;13345;13346;13347;13348;13349;13350;13351 13344 15 ELFQTPGHTEELVAAGK PKEKAQALEDLAGFKELFQTPGHTEELVAA FQTPGHTEELVAAGKTTKIPCDSPQSDPVD K E L G K T 2 0 0 0 0 1 3 2 1 0 2 1 0 1 1 0 2 0 0 1 0 0 17 0 1825.921 P46013 P46013 1229 1245 MKI67 Antigen KI-67 yes yes 2;3 2.2548E-07 91.093 3 4 3.4267 2.952 19.999 3 Plateau 1.843 2.088 NaN 1 0 Median 3.4169 2.9523 0.016269 2 0 Median 475540000 131670000 343870000 153670000 56353000 97318000 321870000 75314000 246560000 3227 1569 3309 8512;8513;8514;8515;8516;8517;8518 13352;13353;13354;13355;13356;13357;13358;13359;13360 13355 9 ELFQTPGHTEESMTDDK PKEKAKALEDLAGFKELFQTPGHTEESMTD FQTPGHTEESMTDDKITEVSCKSPQPDPVK K E L D K I 0 0 0 2 0 1 3 1 1 0 1 1 1 1 1 1 3 0 0 0 0 0 17 0 1963.8469 P46013 P46013 1959 1975 MKI67 Antigen KI-67 yes no 2;3 5.3532E-10 108.96 4 4 2.6429 2.5139 16.939 8 Median 2.1738 2.5139 11.474 4 0 Median 3.3185 2.7563 23.005 4 0 Median 1485100000 457140000 1028000000 1298400000 407280000 891100000 186770000 49861000 136910000 3228 1569 3310;3311 8519;8520;8521;8522;8523;8524;8525;8526 13361;13362;13363;13364;13365;13366;13367;13368;13369;13370;13371;13372;13373;13374 13366 1331 14 ELFQTPGPSEESMTDEK PKEEAQSLEDLAGFKELFQTPGPSEESMTD FQTPGPSEESMTDEKTTKIACKSPPPESVD K E L E K T 0 0 0 1 0 1 4 1 0 0 1 1 1 1 2 2 2 0 0 0 0 0 17 0 1923.8408 P46013 P46013 1107 1123 MKI67 Antigen KI-67 yes yes 2 7.9179E-13 115.14 2 3 2.3929 2.477 9.4555 4 Median 2.1394 2.477 0.76471 2 0 Median 3.0857 2.5143 16.291 2 0 Median 511160000 155450000 355710000 444600000 140380000 304220000 66565000 15075000 51490000 3229 1569 3312;3313 8527;8528;8529;8530;8531 13375;13376;13377;13378;13379;13380;13381;13382;13383;13384 13380 1332 10 ELFQTPGTDKPTTDEK PKEKAQALEDLAGFKELFQTPGTDKPTTDE LFQTPGTDKPTTDEKTTKIACKSPQPDPVD K E L E K T 0 0 0 2 0 1 2 1 0 0 1 2 0 1 2 0 4 0 0 0 0 0 16 1 1805.8683 P46013 P46013 2321 2336 MKI67 Antigen KI-67 yes yes 2;3 6.1289E-56 196.5 4 3 2.1028 2.4798 18.979 7 Median 1.8912 2.2147 6.8777 4 0 Median 3.8723 3.2909 5.7928 3 0 Plateau 1466500000 443240000 1023300000 1252600000 397750000 854860000 213920000 45486000 168440000 3230 1569 3314 8532;8533;8534;8535;8536;8537;8538 13385;13386;13387;13388;13389;13390;13391;13392;13393;13394;13395;13396;13397;13398 13391 14 ELFQTPICTDK PKGKAQPLEDLAGLKELFQTPICTDKPTTH AGLKELFQTPICTDKPTTHEKTTKIACRSP K E L D K P 0 0 0 1 1 1 1 0 0 1 1 1 0 1 1 0 2 0 0 0 0 0 11 0 1350.649 P46013 P46013 2199 2209 MKI67 Antigen KI-67 yes yes 2 0.0074888 62.303 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8852800 0 8852800 8852800 0 8852800 0 0 0 3231 1569 3315 8539 13399 13399 1 ELFQTPICTDKPTTHEK PKGKAQPLEDLAGLKELFQTPICTDKPTTH FQTPICTDKPTTHEKTTKIACRSPQPDPVG K E L E K T 0 0 0 1 1 1 2 0 1 1 1 2 0 1 2 0 4 0 0 0 0 0 17 1 2043.9935 P46013 P46013 2199 2215 MKI67 Antigen KI-67 yes yes 3 0.00088911 62.203 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46075000 0 46075000 46075000 0 46075000 0 0 0 3232 1569 3316 8540 13400;13401 13400 2 ELFQTPVCTDKPTTHEK TKEKAQPLEDLAGLKELFQTPVCTDKPTTH FQTPVCTDKPTTHEKTTKIACRSQPDPVDT K E L E K T 0 0 0 1 1 1 2 0 1 0 1 2 0 1 2 0 4 0 0 1 0 0 17 1 2029.9779 P46013 P46013 1472 1488 MKI67 Antigen KI-67 yes yes 3 1.3169E-05 82.007 3 1 1.8166 2.1446 31.346 3 Median 1.7485 2.0463 6.632 2 0 Median 4.1079 3.5004 NaN 1 0 Median 161360000 54184000 107180000 138850000 49972000 88881000 22507000 4211900 18296000 3233 1569 3317 8541;8542;8543;8544 13402;13403;13404;13405;13406;13407 13402 6 ELFQTR PKEKAQALEDLAGFKELFQTRGHTEESMTN ALEDLAGFKELFQTRGHTEESMTNDKTAKV K E L T R G 0 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 6 0 792.413 P46013 P46013 1593 1598 MKI67 Antigen KI-67 yes yes 2 0.053297 77.374 1 3.2452 2.7435 NaN 1 Median NaN NaN NaN 0 0 Median 3.2452 2.7435 NaN 1 0 Median 30315000 6932500 23383000 0 0 0 30315000 6932500 23383000 3234 1569 3318 8545 13408 13408 1 ELFSAPGHTEESMTIDK RKEKARALEDLVDFKELFSAPGHTEESMTI FSAPGHTEESMTIDKNTKIPCKSPPPELTD K E L D K N 1 0 0 1 0 0 3 1 1 1 1 1 1 1 1 2 2 0 0 0 0 0 17 0 1890.8669 P46013 P46013 2564 2580 MKI67 Antigen KI-67 yes yes 2;3 9.3933E-13 113.24 4 3 2.1624 2.4166 11.749 7 Median 2.0727 2.3776 4.2213 4 0 Median 3.5655 2.7931 15.305 3 0 Median 630420000 210070000 420350000 585580000 199160000 386420000 44844000 10912000 33932000 3235 1569 3319;3320 8546;8547;8548;8549;8550;8551;8552 13409;13410;13411;13412;13413;13414;13415;13416;13417;13418;13419;13420 13416 1333 12 ELFSQFGK YIKNFGEEVDDESLKELFSQFGKTLSVKVM VDDESLKELFSQFGKTLSVKVMRDPNGKSK K E L G K T 0 0 0 0 0 1 1 1 0 0 1 1 0 2 0 1 0 0 0 0 0 0 8 0 954.48108 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;H0YCC8 B1ANR0 209 216 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.011764 69.176 2 2.0869 2.2982 8.4535 2 Median 2.0869 2.2982 8.4535 2 0 Median NaN NaN NaN 0 0 Median 98469000 29979000 68490000 98469000 29979000 68490000 0 0 0 3236 818 3321 8553;8554 13421;13422 13421 2 ELFSTFGELK LVRNIPFQAHSREIRELFSTFGELKTVRLP SREIRELFSTFGELKTVRLPKKMTGTGTHR R E L L K T 0 0 0 0 0 0 2 1 0 0 2 1 0 2 0 1 1 0 0 0 0 0 10 0 1169.5968 Q9Y4C8;A0A024RBL4 Q9Y4C8 850 859 RBM19 Probable RNA-binding protein 19 yes no 2 0.0029784 66.621 1 0.7935 0.7998 NaN 1 Median 0.7935 0.7998 NaN 1 0 Median NaN NaN NaN 0 0 Median 5411800 2546400 2865400 5411800 2546400 2865400 0 0 0 3237 2145 3322 8555 13423 13423 1 ELGELIPLR QAAGGLRAELLRAQRELGELIPLRQKVAEQ LLRAQRELGELIPLRQKVAEQERTAQQLRA R E L L R Q 0 1 0 0 0 0 2 1 0 1 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1038.6073 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1405 1413 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.9395E-05 118.74 2 2 1.0745 1.0199 30.223 4 Median 0.6955 0.75539 20.684 2 0 Median 1.462 1.2202 3.5808 2 0 Median 104640000 59926000 44711000 86382000 52424000 33958000 18254000 7501700 10752000 3238 186;1747 3323 8556;8557;8558;8559 13424;13425;13426;13427;13428 13426 5 ELGFDASEVELTR SIKDPMEDQDGLLGKELGFDASEVELTRNN GKELGFDASEVELTRNNELIAVGKGSSLKR K E L T R N 1 1 0 1 0 0 3 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 13 0 1464.7096 B4DI61;Q6FI18;O00622;Q53FA4;Q9UID7 B4DI61 158 170 CYR61 Protein CYR61 yes no 2 5.4097E-19 145.91 2 2.1516 2.4209 4.0749 2 Median 2.1516 2.4209 4.0749 2 0 Median NaN NaN NaN 0 0 Median 168400000 51493000 116900000 168400000 51493000 116900000 0 0 0 3239 979 3324 8560;8561 13429;13430;13431;13432;13433;13434 13431 6 ELGFEMK KKEKPKPDAYDMMVRELGFEMKAQPSNRMK DAYDMMVRELGFEMKAQPSNRMKTEAELAK R E L M K A 0 0 0 0 0 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 7 0 852.40514 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 259 265 NOP14 Nucleolar protein 14 yes no 2 0.040941 42.474 1 1.1903 1.2898 NaN 1 Median 1.1903 1.2898 NaN 1 0 Median NaN NaN NaN 0 0 Median 22430000 10563000 11868000 22430000 10563000 11868000 0 0 0 3240 790 3325 8562 13435 13435 629 1 ELGFSSHR ATVKARPSVLWCYKKELGFSSHRKKRMRQL VLWCYKKELGFSSHRKKRMRQLQKKIKNGT K E L H R K 0 1 0 0 0 0 1 1 1 0 1 0 0 1 0 2 0 0 0 0 0 0 8 0 931.45118 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 62 69 NAT10 N-acetyltransferase 10 no no 2;3 0.00014575 136.33 3 2 1.0899 1.1014 7.324 4 Median 0.88063 1.0339 2.5637 2 0 Median 1.3472 1.1687 1.9992 2 0 Median 949970000 495180000 454790000 818110000 437730000 380390000 131850000 57450000 74402000 3241 2023;1687 3326 8563;8564;8565;8566;8567 13436;13437;13438;13439;13440;13441;13442;13443;13444 13439 9 ELGGLGMLSMGHVLIPQSDLR KMPSRFPPVVFYTPKELGGLGMLSMGHVLI MLSMGHVLIPQSDLRWSKQTDVGITHFRSG K E L L R W 0 1 0 1 0 1 1 4 1 1 5 0 2 0 1 2 0 0 0 1 0 0 21 0 2222.1551 Q6P2Q9;B4DK16;I3L3Z8 Q6P2Q9 1321 1341 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 1.1329E-05 46.702 1 2.08 2.1326 NaN 1 Median 2.08 2.1326 NaN 1 0 Median NaN NaN NaN 0 0 Median 21048000 5776300 15271000 21048000 5776300 15271000 0 0 0 3242 1854 3327 8568 13445 13445 1709;1710 1 ELGIQVHSVTR RQAPVTRVLVLVPTRELGIQVHSVTRQLAQ VPTRELGIQVHSVTRQLAQFCNITTCLAVG R E L T R Q 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 1 1 0 0 2 0 0 11 0 1237.6779 B3GQE6;A0A087X059;B7Z6D5;Q96GQ7 B3GQE6 269 279 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2;3 5.7803E-10 123.75 4 4 0.97496 0.89938 6.6476 8 Median 0.84164 0.94552 7.0735 4 0 Median 1.0774 0.87823 2.7067 4 0 Median 390330000 212160000 178170000 334720000 184850000 149870000 55611000 27311000 28301000 3243 899;1099 3328 8569;8570;8571;8572;8573;8574;8575;8576 13446;13447;13448;13449;13450;13451;13452;13453;13454;13455;13456;13457;13458;13459 13449 14 ELGITALHIK YAAMLAAQDVAQRCKELGITALHIKLRATG AQRCKELGITALHIKLRATGGNRTKTPGPG K E L I K L 1 0 0 0 0 0 1 1 1 2 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1093.6495 P62263;H0YB22;E5RH77;A4D1M5 P62263 87 96 RPS14;LOC401404 40S ribosomal protein S14 yes no 2;3 5.7334E-06 104.2 3 3 0.97408 0.95192 8.9125 6 Median 0.86614 1.0219 10.456 3 0 Median 1.0851 0.90848 7.2338 3 0 Median 1992300000 1051500000 940780000 1563000000 841220000 721750000 429310000 210270000 219040000 3244 1638 3329 8577;8578;8579;8580;8581;8582 13460;13461;13462;13463;13464;13465;13466;13467;13468;13469;13470;13471;13472;13473 13460 14 ELGLPEELVSR PLKDFHKDEVRILGRELGLPEELVSRHPFP ILGRELGLPEELVSRHPFPGPGLAIRVICA R E L S R H 0 1 0 0 0 0 3 1 0 0 3 0 0 0 1 1 0 0 0 1 0 0 11 0 1240.6663 B4DUT7;A0A140VJK6;P49915;Q53F90 B4DUT7 374 384 GMPS GMP synthase [glutamine-hydrolyzing] yes no 2 0.0073354 52.79 2 2.1103 2.1533 7.0114 2 Median 2.1103 2.1533 7.0114 2 0 Median NaN NaN NaN 0 0 Median 55197000 18999000 36198000 55197000 18999000 36198000 0 0 0 3245 604 3330 8583;8584 13474;13475;13476 13474 3 ELGNIIQK LMQAIDAVKPGVRYRELGNIIQKHAQANGF KPGVRYRELGNIIQKHAQANGFSVVRSYCG R E L Q K H 0 0 1 0 0 1 1 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 913.52328 P53582;Q5CZ91;H0Y955 P53582 271 278 METAP1;DKFZp781C0419 Methionine aminopeptidase 1 yes no 2 0.027969 53.554 1 0.98302 1.0195 NaN 1 Median 0.98302 1.0195 NaN 1 0 Median NaN NaN NaN 0 0 Median 33387000 19331000 14056000 33387000 19331000 14056000 0 0 0 3246 1605 3331 8585 13477 13477 1 ELGSLPQEAFEK GMLLKKKEECMKKIRELGSLPQEAFEKYQT KIRELGSLPQEAFEKYQTLSLKQLFRKLEQ R E L E K Y 1 0 0 0 0 1 3 1 0 0 2 1 0 1 1 1 0 0 0 0 0 0 12 0 1346.6718 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 945 956 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0063016 72.434 1 1.3792 1.3539 NaN 1 Median 1.3792 1.3539 NaN 1 0 Median NaN NaN NaN 0 0 Median 23004000 9374900 13629000 23004000 9374900 13629000 0 0 0 3247 803 3332 8586 13478 13478 0 ELGVGIALR RWRLVDSKGFDEYMKELGVGIALRKMGAMA FDEYMKELGVGIALRKMGAMAKPDCIITCD K E L L R K 1 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 926.55492 E7DVW5;Q01469 E7DVW5 25 33 FABP5 Fatty acid-binding protein, epidermal yes no 2 0.017706 60.682 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39204000 39204000 0 39204000 39204000 0 0 0 0 3248 1217 3333 8587;8588 13479;13480 13480 2 ELHENVLDK ENGLEKDLDEEGSEKELHENVLDKELEEND EEGSEKELHENVLDKELEENDSENSEFEDD K E L D K E 0 0 1 1 0 0 2 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1095.556 O43719;B4DRS4 O43719 582 590 HTATSF1 HIV Tat-specific factor 1 yes no 2 3.6139E-12 160.36 2 0.54233 0.57568 119.18 2 Median 0.54233 0.57568 119.18 2 0 Median NaN NaN NaN 0 0 Median 148560000 111500000 37064000 148560000 111500000 37064000 0 0 0 3249 1388 3334 8589;8590 13481;13482;13483;13484 13481 4 ELHGPFSQVEDLER QRIGPKKAQLIVGWRELHGPFSQVEDLERV RELHGPFSQVEDLERVEGITGKQMESFLKA R E L E R V 0 1 0 1 0 1 3 1 1 0 2 0 0 1 1 1 0 0 0 1 0 0 14 0 1654.7951 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 623 636 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 9.615E-10 90.412 2 2 1.0961 1.0595 13.878 4 Median 0.84629 0.93528 6.0184 2 0 Median 1.4006 1.1775 3.3259 2 0 Median 111530000 57618000 53917000 96441000 51500000 44941000 15094000 6117900 8975600 3250 1745 3335 8591;8592;8593;8594 13485;13486;13487;13488;13489;13490;13491 13486 7 ELHGPFSQVEDLERVEGITGK QRIGPKKAQLIVGWRELHGPFSQVEDLERV SQVEDLERVEGITGKQMESFLKANILGLAA R E L G K Q 0 1 0 1 0 1 4 3 1 1 2 1 0 1 1 1 1 0 0 2 0 0 21 1 2339.1757 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 623 643 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 4 0.054607 8.089 1 1.4246 1.1879 NaN 1 Median NaN NaN NaN 0 0 Median 1.4246 1.1879 NaN 1 0 Median 6272500 2507200 3765300 0 0 0 6272500 2507200 3765300 3251 1745 3336 8595 13492 13492 1 ELHGTSIVPK IRGSYLTVTLQRPTKELHGTSIVPKLQAIT QRPTKELHGTSIVPKLQAITASSANLRHSP K E L P K L 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1079.5975 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 792 801 KDM2A Lysine-specific demethylase 2A yes no 2 0.0015265 73.248 2 2 0.57973 0.54063 11.601 4 Median 0.56415 0.58455 0.43998 2 0 Median 0.60484 0.48202 5.6254 2 0 Median 40692000 26158000 14534000 33847000 21774000 12073000 6845300 4383800 2461400 3252 1323 3337 8596;8597;8598;8599 13493;13494;13495;13496 13494 4 ELHINLIPNK RYESLTDPSKLDSGKELHINLIPNKQDRTL LDSGKELHINLIPNKQDRTLTIVDTGIGMT K E L N K Q 0 0 2 0 0 0 1 0 1 2 2 1 0 0 1 0 0 0 0 0 0 0 10 0 1189.6819 K9JA46;P07900;Q2VPJ6;G3V2J8;Q14568;B4DTA5;Q86SX1 K9JA46 75 84 EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 2;3 4.7334E-08 116.37 2 1 2.8022 3.1042 42.185 3 Median 3.4411 3.62 21.741 2 0 Median 2.3517 1.8332 NaN 1 0 Median 64399000 15441000 48957000 60644000 14357000 46287000 3754400 1084300 2670100 3253 1348 3338 8600;8601;8602 13497;13498;13499;13500 13498 4 ELIEDDFEVNVNDAR QNLSKKKKKQLMKKKELIEDDFEVNVNDAR ELIEDDFEVNVNDARFQAMYTSHLFNLDPS K E L A R F 1 1 2 3 0 0 3 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 15 0 1776.8166 Q9H501 Q9H501 747 761 ESF1 ESF1 homolog yes yes 2 6.8037E-06 95.401 2 2 0.81692 0.75576 5.0169 4 Median 0.75428 0.77095 7.0528 2 0 Median 0.88696 0.75402 4.5647 2 0 Median 46795000 23198000 23597000 38667000 18694000 19973000 8128500 4504400 3624200 3254 2033 3339 8603;8604;8605;8606 13501;13502;13503;13504;13505 13502 5 ELIEELIAK TQQEGEEREKPKSRKELIEELIAKSKQEKR KPKSRKELIEELIAKSKQEKRERQAQREDA K E L A K S 1 0 0 0 0 0 3 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1056.6067 A8KA74;P78316;E9PFK5 A8KA74 191 199 NOP14 Nucleolar protein 14 yes no 2 0.0013285 86.833 1 2 1.1029 0.88511 15.022 3 Median 0.7903 0.77752 NaN 1 0 Median 1.1921 0.9636 12.016 2 0 Median 39250000 20492000 18758000 23835000 13054000 10781000 15414000 7437700 7976500 3255 790 3340 8607;8608;8609 13506;13507;13508;13509 13506 4 ELIHLLPIK KYEKIPRTLQTAPEKELIHLLPIKDKSGII QTAPEKELIHLLPIKDKSGIIPQTREKPVT K E L I K D 0 0 0 0 0 0 1 0 1 2 3 1 0 0 1 0 0 0 0 0 0 0 9 0 1074.6801 A8K905;Q8WTT2 A8K905 148 156 NOC3L Nucleolar complex protein 3 homolog yes no 2 8.1721E-07 137.18 2 2 1.2676 1.066 11.818 4 Median 1.1534 1.203 12.813 2 0 Median 1.2683 1.0259 1.1245 2 0 Median 67410000 28470000 38940000 53706000 22649000 31057000 13704000 5820900 7883200 3256 780 3341 8610;8611;8612;8613 13510;13511;13512;13513;13514;13515;13516 13513 7 ELIKPPTILR ______________________________ SNILKELIKPPTILRSVVNSITGSSNVGDT K E L L R S 0 1 0 0 0 0 1 0 0 2 2 1 0 0 2 0 1 0 0 0 0 0 10 1 1178.7387 Q8NDP0;A0A024QZR5;Q9Y2T2;H0YBA0;E7ER80;E5RJ52;P53677 Q8NDP0 11 20 DKFZp586G1518;AP3M1;AP3M2 AP-3 complex subunit mu-1;AP-3 complex subunit mu-2 yes no 3 0.013802 52.49 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5061800 0 5061800 5061800 0 5061800 0 0 0 3257 27 3342 8614;8615 13517;13518 13517 2 ELILFSNSDNER GQTTTYLTYNDFINKELILFSNSDNERSIP INKELILFSNSDNERSIPSMVDGLKPGQRK K E L E R S 0 1 2 1 0 0 2 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 12 0 1435.6943 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 P11388 702 713 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 2.9218E-162 278.03 10 6 0.98579 1.0091 12.9 4 Median 0.74822 0.89512 2.7538 2 0 Median 1.2792 1.1173 0.20359 2 0 Median 9358300000 5223300000 4135000000 8366700000 4796100000 3570600000 991580000 427220000 564360000 3258 1471;1679 3343 8616;8617;8618;8619;8620;8621;8622;8623;8624;8625;8626;8627;8628;8629;8630;8631 13519;13520;13521;13522;13523;13524;13525;13526;13527;13528;13529;13530;13531;13532;13533;13534;13535;13536;13537;13538;13539;13540;13541;13542;13543;13544;13545 13520 27 ELILHNPVTLK FLMSATFNEDVQALKELILHNPVTLKLQES QALKELILHNPVTLKLQESQLPGPDQLQQF K E L L K L 0 0 1 0 0 0 1 0 1 1 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1275.7551 Q9NY93;H7C3E9;G3V0G3 Q9NY93 209 219 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 9.2193E-05 97.472 1 2 1.175 1.0542 9.8422 3 Median 0.98003 1.1003 NaN 1 0 Median 1.2245 0.9805 10.254 2 0 Median 81812000 39813000 41999000 55510000 28082000 27428000 26302000 11731000 14571000 3259 2081 3344 8632;8633;8634 13546;13547;13548;13549;13550 13549 5 ELIMGEDPAQPR IPEYEEHKQSYWRHRELIMGEDPAQPRKYK RHRELIMGEDPAQPRKYKKKKKELQGDGPP R E L P R K 1 1 0 1 0 1 2 1 0 1 1 0 1 0 2 0 0 0 0 0 0 0 12 0 1354.6551 Q12873 Q12873 685 696 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 0.00038438 75.294 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3260 1701 3345 8635 13551 13551 1533 1 ELINNLDADSLR FNDDNTIPFIIRYRKELINNLDADSLREVQ YRKELINNLDADSLREVQQTLEELRAVAKK K E L L R E 1 1 2 2 0 0 1 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 12 0 1371.6994 B3KPM8;Q8N5C6 B3KPM8 251 262 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.0016061 76.143 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1721400 0 1721400 0 0 0 1721400 0 1721400 3261 921 3346 8636 13552 13552 1 ELIPTEEALR PYTEQTISLFQAMKKELIPTEEALRLLDAQ QAMKKELIPTEEALRLLDAQLATGGIVDPR K E L L R L 1 1 0 0 0 0 3 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1169.6292 Q15149;D3DWL0;Q96IE3 Q15149 3926 3935 PLEC;PLEC1 Plectin yes no 2 4.4984E-05 99.139 2 2 1.8431 1.7982 3.1274 4 Median 1.5537 1.7517 0.5066 2 0 Median 2.1856 1.848 0.66694 2 0 Median 163420000 65662000 97754000 148170000 60825000 87348000 15244000 4837600 10406000 3262 1754 3347 8637;8638;8639;8640 13553;13554;13555;13556;13557;13558 13556 6 ELIQEYGAQSGGLEK WDLLSSPYFTEDRKRELIQEYGAQSGGLEK ELIQEYGAQSGGLEKLLEIITTTIEETETQ R E L E K L 1 0 0 0 0 2 3 3 0 1 2 1 0 0 0 1 0 0 1 0 0 0 15 0 1620.7995 A0A075B730;A0A087X1U6;P58107 A0A075B730 1787 1801 EPPK1 Epiplakin no no 2 3.1707E-15 130.56 2 2 2.158 2.0028 9.2214 4 Median 2.0628 2.1137 3.8955 2 0 Median 2.3191 1.8477 7.6797 2 0 Median 50804000 18727000 32076000 44680000 16896000 27784000 6123500 1831300 4292200 3263 397;1622 3348 8641;8642;8643;8644 13559;13560;13561;13562;13563;13564;13565;13566;13567;13568 13562 10 ELISDNQYR LDDEEDQGIYQSKVRELISDNQYRLIVNVN YQSKVRELISDNQYRLIVNVNDLRRKNEKR R E L Y R L 0 1 1 1 0 1 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1136.5462 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492 Q53HJ4 38 46 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.001762 81.191 2 1 1.2534 1.4378 37.957 3 Median 1.3388 1.4927 5.2977 2 0 Median 0.91573 0.77597 NaN 1 0 Median 104470000 43407000 61061000 101450000 41695000 59751000 3021100 1712000 1309100 3264 568 3349 8645;8646;8647 13569;13570;13571;13572 13570 4 ELISFLSEPEILVK VDEDFPEDSSSQKVKELISFLSEPEILVKE KELISFLSEPEILVKENNMHPKHCNLLGDE K E L V K E 0 0 0 0 0 0 3 0 0 2 3 1 0 1 1 2 0 0 0 1 0 0 14 0 1615.9073 A0A0C4DGW6;A6NDU8 A0A0C4DGW6 98 111 C5orf51 UPF0600 protein C5orf51 yes no 2 1.812E-29 152.07 2 1.5246 1.5635 64.447 2 Median 1.5246 1.5635 64.447 2 0 Median NaN NaN NaN 0 0 Median 47743000 15932000 31811000 47743000 15932000 31811000 0 0 0 3265 519 3350 8648;8649 13573;13574;13575;13576 13573 4 ELISLLHLSLLHLEEDK QQARNVMQSWVLISKELISLLHLSLLHLEE ISLLHLSLLHLEEDKTTVSQESRRAETLVC K E L D K T 0 0 0 1 0 0 3 0 2 1 7 1 0 0 0 2 0 0 0 0 0 0 17 0 2001.1146 A8K8N3;Q96R06;J3KTQ0 A8K8N3 513 529 SPAG5 Sperm-associated antigen 5 yes no 3 6.0642E-05 49.993 2 0.39257 0.40391 17.781 2 Median 0.39257 0.40391 17.781 2 0 Median NaN NaN NaN 0 0 Median 9276600 6216100 3060500 9276600 6216100 3060500 0 0 0 3266 779 3351 8650;8651 13577;13578 13578 2 ELISNASDALDK LIINTFYSNKEIFLRELISNASDALDKIRY FLRELISNASDALDKIRYESLTDPSKLDSG R E L D K I 2 0 1 2 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1274.6354 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;F8W026;B4DQX3;Q96GW1;Q5CAQ5;V9HWP2;P14625;Q59FC6 B4DMA2 42 53 HSP90AB1;HSP90B1;TRA1;HEL-S-125m Heat shock protein HSP 90-beta;Endoplasmin no no 2 3.6232E-13 135.55 2 2 2.3769 2.9134 47.112 4 Linear 2.2323 2.6037 1.9729 2 0 Median 1.4157 1.1517 0.78686 2 0 Median 759930000 231840000 528090000 707750000 210570000 497180000 52173000 21268000 30905000 3267 379;1482 3352 8652;8653;8654;8655 13579;13580;13581;13582;13583;13584;13585;13586;13587;13588;13589;13590;13591;13592;13593 13580 15 ELISNSSDALDK LIINTFYSNKEIFLRELISNSSDALDKIRY FLRELISNSSDALDKIRYESLTDPSKLDSG R E L D K I 1 0 1 2 0 0 1 0 0 1 2 1 0 0 0 3 0 0 0 0 0 0 12 0 1290.6303 K9JA46;P07900;Q2VPJ6;G3V2J8;Q14568;B4DTA5;Q86SX1 K9JA46 47 58 EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 2 0.0004768 70.412 1 1 2.5 2.3401 42.318 2 Median 2.8411 3.1564 NaN 1 0 Median 2.1998 1.7349 NaN 1 0 Median 54119000 13276000 40843000 50049000 12055000 37994000 4070000 1221200 2848800 3268 1348 3353 8656;8657 13594;13595;13596 13596 3 ELISWGAPGSADSTR AAALGLALPGLALFRELISWGAPGSADSTR ELISWGAPGSADSTRLLHWGSHPTAFVVSY R E L T R L 2 1 0 1 0 0 1 2 0 1 1 0 0 0 1 3 1 1 0 0 0 0 15 0 1545.7423 X5CKB3;B2R9F3;A0A140T9T7;A0A0S2Z5A6;Q03518;Q6QWC1;Q6QWC0;O94774 X5CKB3 115 129 TAP1;TAP1*0102N Antigen peptide transporter 1 yes no 2 0.00021933 62.694 2 0.66301 0.65479 NaN 1 Median 0.66301 0.65479 NaN 1 0 Median NaN NaN NaN 0 0 Median 20965000 9675800 11289000 20965000 9675800 11289000 0 0 0 3269 578 3354 8658;8659 13597;13598;13599;13600 13600 4 ELLADQNLK FIDIYLDELSKVGGKELLADQNLKFIDPFC SKVGGKELLADQNLKFIDPFCKIAAKTKDH K E L L K F 1 0 1 1 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1042.5659 Q14684;Q6PJM8 Q14684 183 191 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 2.9977E-06 134.81 2 2 1.2836 1.2112 3.1836 4 Median 1.0668 1.1898 4.5637 2 0 Median 1.5085 1.2139 2.3559 2 0 Median 145920000 68150000 77773000 113830000 54577000 59250000 32095000 13573000 18523000 3270 1740 3355 8660;8661;8662;8663 13601;13602;13603;13604;13605;13606;13607 13601 7 ELLASAPTGSGK TPIQMQAIPVMLHGRELLASAPTGSGKTLA HGRELLASAPTGSGKTLAFSIPILMQLKQP R E L G K T 2 0 0 0 0 0 1 2 0 0 2 1 0 0 1 2 1 0 0 0 0 0 12 0 1129.5979 Q9Y2R4;Q59H21;B3KM65 Q9Y2R4 204 215 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 0.0012733 61.56 3 0.97505 0.76518 NaN 1 Median NaN NaN NaN 0 0 Median 0.97505 0.76518 NaN 1 0 Median 5355200 2048600 3306700 0 0 0 5355200 2048600 3306700 3271 2126 3356 8664;8665;8666 13608;13609;13610;13611 13608 4 ELLDSDSDKPCK MDISKITEKKDQDVKELLDSDSDKPCKEEP DVKELLDSDSDKPCKEEPMEVDDDMKTESH K E L C K E 0 0 0 3 1 0 1 0 0 0 2 2 0 0 1 2 0 0 0 0 0 0 12 1 1405.6395 E7ETD6;Q12830;F5GXF5 E7ETD6 988 999 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0033288 74.162 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3272 1224 3357 8667 13612 13612 1 ELLEEMYEEK QQREQWCSEHLDTQKELLEEMYEEKLNILK LDTQKELLEEMYEEKLNILKESLTSFYQEE K E L E K L 0 0 0 0 0 0 5 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 10 0 1311.5904 O95235;H0YAC9 O95235 616 625 KIF20A Kinesin-like protein KIF20A yes no 2 5.5085E-06 104.2 2 2 0.96263 0.91307 18.619 4 Median 0.96263 1.0635 0.30771 2 0 Median 0.96095 0.77119 2.6185 2 0 Median 113230000 57461000 55768000 100770000 51065000 49707000 12456000 6395200 6061200 3273 1421 3358 8668;8669;8670;8671 13613;13614;13615;13616;13617;13618 13613 1115 6 ELLEIVK SISIFHYGTSQKSERELLEIVKKNFDLRPG GTSQKSERELLEIVKKNFDLRPGVIVRDLD R E L V K K 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 842.51132 A0A140VJP5;P31153;B4DEX8;B4E1K2;B4DN74;B4DFQ8 A0A140VJP5 344 350 MAT2A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase yes no 2 0.01505 94.163 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3274 606 3359 8672;8673 13619;13620 13620 2 ELLEQISAFDNVPR ISELIKRPNVSPKVRELLEQISAFDNVPRK RELLEQISAFDNVPRKKAKFQNWMKNSLKV R E L P R K 1 1 1 1 0 1 2 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 14 0 1629.8362 Q9NX58;A8K3Y5 Q9NX58 96 109 LYAR Cell growth-regulating nucleolar protein yes no 2 1.8397E-46 178.67 2 2 1.0161 1.0006 1.8713 4 Median 0.88287 1.0011 3.1442 2 0 Median 1.1533 1.0006 0.78576 2 0 Median 352190000 179930000 172260000 185360000 102250000 83112000 166820000 77677000 89146000 3275 2079 3360 8674;8675;8676;8677 13621;13622;13623;13624;13625;13626;13627;13628 13623 8 ELLESISPALLSYLQEHAQEVVLDK DGNAHSKKDTEVRRRELLESISPALLSYLQ LSYLQEHAQEVVLDKSACVLVSDILGSATG R E L D K S 2 0 0 1 0 2 4 0 1 1 6 1 0 0 1 3 0 0 1 2 0 0 25 0 2823.4906 Q15397;B2RDG4 Q15397 481 505 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 3 1.3379E-12 71.696 2 0.76189 0.86428 9.8479 2 Median 0.76189 0.86428 9.8479 2 0 Median NaN NaN NaN 0 0 Median 259260000 138360000 120900000 259260000 138360000 120900000 0 0 0 3276 1761 3361 8678;8679 13629;13630 13629 2 ELLFLSNANPSLLER NWLQHEKAPTEEGKKELLFLSNANPSLLER ELLFLSNANPSLLERHCAYL__________ K E L E R H 1 1 2 0 0 0 2 0 0 0 5 0 0 1 1 2 0 0 0 0 0 0 15 0 1714.9254 P51398;V9GYW1;V9GYA7;V9GZ61;V9GYF7 P51398 379 393 DAP3 28S ribosomal protein S29, mitochondrial yes no 2 3.1008E-10 117.23 2 2 1.3295 1.2877 9.5444 4 Median 1.3295 1.3246 3.2624 2 0 Median 1.3555 1.1813 11.463 2 0 Median 38733000 18781000 19951000 32764000 16331000 16434000 5968200 2450500 3517600 3277 1594 3362 8680;8681;8682;8683 13631;13632;13633;13634;13635;13636;13637;13638;13639;13640 13632 10 ELLGQGLLLR AHNALLDIQSSGRAKELLGQGLLLRSLQER SGRAKELLGQGLLLRSLQERNQEQEKVERR K E L L R S 0 1 0 0 0 1 1 2 0 0 5 0 0 0 0 0 0 0 0 0 0 0 10 0 1110.6761 A0A024QYX7;B3KNZ4;B4DRU0;B4DVU3;B4E2Z6;B4DDN4;B4DVQ5;A1KYQ7;A0A024QYU9;Q99613;B5ME19 A0A024QYX7 328 337 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.0090986 64.265 3 2.561 2.583 NaN 1 Median 2.561 2.583 NaN 1 0 Median NaN NaN NaN 0 0 Median 9311700 1754800 7556900 9311700 1754800 7556900 0 0 0 3278 6 3363 8684;8685;8686 13641;13642;13643;13644 13641 4 ELLIFNK IKDELKKVCSTNDLKELLIFNKQQVPSGES VCSTNDLKELLIFNKQQVPSGESAILDRVA K E L N K Q 0 0 1 0 0 0 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 7 0 875.51165 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 263 269 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.014352 100.27 2 1 0.69934 0.81877 7.0778 3 Median 0.68569 0.79938 3.3895 2 0 Median 1.1076 0.89712 NaN 1 0 Median 576270000 349840000 226440000 552240000 338280000 213970000 24032000 11560000 12472000 3279 139 3364 8687;8688;8689 13645;13646;13647;13648;13649;13650 13649 6 ELLIIGGVAAR NIKQFKKYIDNPKLRELLIIGGVAARDQLS PKLRELLIIGGVAARDQLSVLENGVDIVVG R E L A R D 2 1 0 0 0 0 1 2 0 2 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1110.6761 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 239 249 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 2.4522E-05 102.51 3 2 1.282 1.0933 4.7849 2 Median NaN NaN NaN 0 0 Median 1.282 1.0933 4.7849 2 0 Median 51350000 4017800 47332000 42636000 0 42636000 8713900 4017800 4696100 3280 452 3365 8690;8691;8692;8693;8694 13651;13652;13653;13654;13655;13656;13657 13651 7 ELLIQIFSTPR FDPAFDELPHYALLKELLIQIFSTPRYHPK ALLKELLIQIFSTPRYHPKSQPFVDHVFTF K E L P R Y 0 1 0 0 0 1 1 0 0 2 2 0 0 1 1 1 1 0 0 0 0 0 11 0 1315.75 Q8TDN6;A0JLQ5 Q8TDN6 183 193 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 2.6875E-23 172.59 2 2 1.1122 1.1168 3.1225 4 Median 0.95135 1.0958 1.4465 2 0 Median 1.3255 1.1469 2.5273 2 0 Median 427280000 214010000 213270000 347650000 180400000 167260000 79621000 33611000 46010000 3281 1934 3366 8695;8696;8697;8698 13658;13659;13660;13661;13662;13663;13664;13665 13662 8 ELLITDLLPDNR KGSKQQCLMALDTFKELLITDLLPDNRKLR TFKELLITDLLPDNRKLRIFSQRPFDKLEQ K E L N R K 0 1 1 2 0 0 1 0 0 1 4 0 0 0 1 0 1 0 0 0 0 0 12 0 1410.7718 B2R5U7;Q03701 B2R5U7 291 302 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 3.63E-08 140.49 2 2 1.0254 0.91393 6.9112 4 Median 0.94498 0.96715 9.5409 2 0 Median 1.078 0.90517 2.898 2 0 Median 50807000 24730000 26077000 39592000 20056000 19536000 11215000 4674100 6540600 3282 836;1683 3367 8699;8700;8701;8702 13666;13667;13668;13669;13670;13671;13672;13673 13668 8 ELLITDLLPDNRK KGSKQQCLMALDTFKELLITDLLPDNRKLR FKELLITDLLPDNRKLRIFSQRPFDKLEQL K E L R K L 0 1 1 2 0 0 1 0 0 1 4 1 0 0 1 0 1 0 0 0 0 0 13 1 1538.8668 B2R5U7;Q03701 B2R5U7 291 303 CEBPZ CCAAT/enhancer-binding protein zeta no no 2;3 2.6722E-13 129.16 4 2 1.0428 1.1917 20.289 5 Median 1.0428 1.2188 3.7443 3 0 Median 1.0183 0.85376 4.0913 2 0 Median 111060000 53106000 57954000 97295000 46616000 50679000 13765000 6490200 7274800 3283 836;1683 3368 8703;8704;8705;8706;8707;8708 13674;13675;13676;13677;13678;13679;13680;13681 13679 8 ELLLPNWQGSGSHGLTIAQR ______________________________ NWQGSGSHGLTIAQRDDGVFVQEVTQNSPA R E L Q R D 1 1 1 0 0 2 1 3 1 1 4 0 0 0 1 2 1 1 0 0 0 0 20 0 2176.1389 Q09666;B4DTV0;E9PQE3;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q96EC4;Q9BVU3 Q09666 9 28 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3 2.9931E-13 103.41 2 1 1.3361 1.4486 28.531 3 Plateau 1.2991 1.3726 7.6193 2 0 Median 0.98419 0.84488 NaN 1 0 Median 55674000 25740000 29934000 47465000 21263000 26202000 8209500 4476600 3732800 3284 1696 3369 8709;8710;8711 13682;13683;13684;13685;13686 13685 5 ELLLQPVTISR VERHNKPEVEVRSSKELLLQPVTISRNEKE RSSKELLLQPVTISRNEKEKVLIEGSINSV K E L S R N 0 1 0 0 0 1 1 0 0 1 3 0 0 0 1 1 1 0 0 1 0 0 11 0 1267.75 F8WDD7;F8WCF6;A0A0A6YYG9;P59998;Q9H7Z5;H7C0A3 F8WDD7 45 55 ARPC4;ARPC4-TTLL3 Actin-related protein 2/3 complex subunit 4 yes no 2 0.00038966 82.287 1 1.82 1.8805 NaN 1 Median 1.82 1.8805 NaN 1 0 Median NaN NaN NaN 0 0 Median 13912000 5337500 8574600 13912000 5337500 8574600 0 0 0 3285 492 3370 8712 13687 13687 1 ELLLSAIDSVNATSK NKDEKDILRCAHLQKELLLSAIDSVNATSK ELLLSAIDSVNATSKTGGYLVYCTCSITVE K E L S K T 2 0 1 1 0 0 1 0 0 1 3 1 0 0 0 3 1 0 0 1 0 0 15 0 1559.8407 P46087 P46087 493 507 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 1.3813E-30 157.03 2 2 1.1296 1.1172 11.297 4 Median 1.0785 1.2341 2.3367 2 0 Median 1.1896 1.0168 1.5693 2 0 Median 507350000 232050000 275300000 344800000 164060000 180750000 162550000 67997000 94552000 3286 1570 3371 8713;8714;8715;8716 13688;13689;13690;13691;13692;13693;13694;13695;13696 13694 9 ELLNETEEEINK NCLVKYRAQVYVPLKELLNETEEEINKALN PLKELLNETEEEINKALNKKMGLEDTLEQL K E L N K A 0 0 2 0 0 0 5 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1459.7042 A8K031;O14777;Q05DQ6 A8K031 463 474 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.00086033 64.73 1 0.9612 0.76865 NaN 1 Median NaN NaN NaN 0 0 Median 0.9612 0.76865 NaN 1 0 Median 7066300 3604300 3462000 0 0 0 7066300 3604300 3462000 3287 696 3372 8717 13697;13698 13697 2 ELLNPVVEFVSHPSTTCR IIYKMMPKLKPVELRELLNPVVEFVSHPST NPVVEFVSHPSTTCREQMYNILMWIHDNYR R E L C R E 0 1 1 0 1 0 2 0 1 0 2 0 0 1 2 2 2 0 0 3 0 0 18 0 2084.0361 P78527 P78527 2453 2470 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 3.3524E-06 79.311 3 4 0.59542 0.63954 57.297 5 Median 0.62451 0.70689 6.6555 3 0 Median 0.28355 0.24381 8.3796 2 0 Median 166870000 112990000 53877000 101540000 61895000 39644000 65328000 51095000 14233000 3288 1665 3373 8718;8719;8720;8721;8722;8723;8724 13699;13700;13701;13702;13703;13704;13705;13706;13707;13708;13709;13710 13707 12 ELLPLIYHHLLR ______________________________ KRRELLPLIYHHLLRAGYVRAAREVKEQSG R E L L R A 0 1 0 0 0 0 1 0 2 1 5 0 0 0 1 0 0 0 1 0 0 0 12 0 1515.8926 E7ETY2;B4DLB1;Q13428 Q13428 9 20 TCOF1 Treacle protein no no 3 0.0039991 44.612 2 1.9506 1.6297 1.3597 2 Median NaN NaN NaN 0 0 Median 1.9506 1.6297 1.3597 2 0 Median 10888000 3759300 7128600 0 0 0 10888000 3759300 7128600 3289 1712;1225 3374 8725;8726 13711;13712;13713 13711 3 ELLQDIGDTLSR SLIAQLEEKQQQPTRELLQDIGDTLSRAER PTRELLQDIGDTLSRAERIRIPEPWITPPD R E L S R A 0 1 0 2 0 1 1 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 12 0 1358.7042 P14373;Q59EC6 P14373 246 257 TRIM27 Zinc finger protein RFP yes no 2 4.3015E-08 105.98 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15421000 7083200 8337500 15421000 7083200 8337500 0 0 0 3290 1480 3375 8727;8728 13714;13715 13714 2 ELLQESALIR RGVVDSEEIPLNLSRELLQESALIRKLRDV LNLSRELLQESALIRKLRDVLQQRLIKFFI R E L I R K 1 1 0 0 0 1 2 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1170.6608 Q5CAQ4;I3L0K7;K0A7K7;Q9BV61;Q59EK6;Q53G55;Q53FS6;A0A140VJY2;Q12931;I3L239;Q8N9Z3 Q5CAQ4 194 203 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 2 0.0015298 73.233 2 2.0209 2.0355 12.322 2 Median 2.0209 2.0355 12.322 2 0 Median NaN NaN NaN 0 0 Median 14423000 3616300 10807000 14423000 3616300 10807000 0 0 0 3291 612 3376 8729;8730 13716;13717 13716 2 ELLTEFGYK VQDSEMVELVELEIRELLTEFGYKGEETPV VELEIRELLTEFGYKGEETPVIVGSALCAL R E L Y K G 0 0 0 0 0 0 2 1 0 0 2 1 0 1 0 0 1 0 1 0 0 0 9 0 1098.5597 P49411 P49411 201 209 TUFM Elongation factor Tu, mitochondrial yes yes 2 1.8757E-05 119.29 2 1 1.8488 2.0654 2.7659 2 Median 1.8488 2.0654 2.7659 2 0 Median NaN NaN NaN 0 0 Median 160980000 57275000 103710000 159840000 56132000 103710000 1142800 1142800 0 3292 1580 3377 8731;8732;8733 13718;13719;13720;13721;13722;13723 13719 6 ELLTLDEK WRVKFTLAKIRKAARELLTLDEKDPRRLFE KIRKAARELLTLDEKDPRRLFEGNALLRRL R E L E K D 0 0 0 1 0 0 2 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 959.51753 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;F2Z3C0;A8MXK4 A0A024R4M0 59 66 RPS9 40S ribosomal protein S9 yes no 2 0.00099112 119.29 2 2 0.9039 1.0735 22.803 4 Linear 0.89767 1.06 2.8474 2 0 Median 0.8377 0.71538 2.3434 2 0 Median 1093600000 566600000 527010000 937600000 483960000 453640000 156010000 82637000 73371000 3293 157 3378 8734;8735;8736;8737 13724;13725;13726;13727;13728;13729;13730;13731;13732;13733;13734;13735;13736 13725 13 ELLTLDEKDPR WRVKFTLAKIRKAARELLTLDEKDPRRLFE KAARELLTLDEKDPRRLFEGNALLRRLVRI R E L P R R 0 1 0 2 0 0 2 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 11 1 1327.6983 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;F2Z3C0;A8MXK4 A0A024R4M0 59 69 RPS9 40S ribosomal protein S9 yes no 2 0.025323 57.55 1 1.2879 1.0617 NaN 1 Median NaN NaN NaN 0 0 Median 1.2879 1.0617 NaN 1 0 Median 5279400 2457000 2822300 0 0 0 5279400 2457000 2822300 3294 157 3379 8738 13737 13737 1 ELLTSFGPLK FIGGLPNYLNDDQVKELLTSFGPLKAFNLV DDQVKELLTSFGPLKAFNLVKDSATGLSKG K E L L K A 0 0 0 0 0 0 1 1 0 0 3 1 0 1 1 1 1 0 0 0 0 0 10 0 1103.6227 K7ENG2;B5BU25;P26368 K7ENG2 113 122 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 0.00076782 81.548 2 1.1764 1.204 0.19266 2 Median 1.1764 1.204 0.19266 2 0 Median NaN NaN NaN 0 0 Median 25317000 12587000 12730000 25317000 12587000 12730000 0 0 0 3295 1074 3380 8739;8740 13738;13739 13739 2 ELMGEEILGASLSAPLTSYK YQGFTKDNGVVPVVKELMGEEILGASLSAP EILGASLSAPLTSYKVIYVLPMLTIKEDKG K E L Y K V 2 0 0 0 0 0 3 2 0 1 4 1 1 0 1 3 1 0 1 0 0 0 20 0 2108.0711 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3 B4E266 305 324 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 9.4393E-11 86.467 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11351000 0 11351000 11351000 0 11351000 0 0 0 3296 883 3381 8741;8742 13740;13741;13742;13743 13741 696 4 ELMGFSK QETQGLQKEKESREKELMGFSKSVNEARSK KEKESREKELMGFSKSVNEARSKMDVAQSE K E L S K S 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 7 0 810.39458 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 484 490 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.027686 51.787 2 1.0127 1.138 3.9582 2 Median 1.0127 1.138 3.9582 2 0 Median NaN NaN NaN 0 0 Median 207060000 101470000 105590000 207060000 101470000 105590000 0 0 0 3297 2070 3382 8743;8744 13744;13745 13744 1898 2 ELNEDKLEK NATYCRLAQFIGNRRELNEDKLEKLEELTM FIGNRRELNEDKLEKLEELTMDGAKAKAIL R E L E K L 0 0 1 1 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1116.5663 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 222 230 NOP56 Nucleolar protein 56 yes no 2 3.6001E-11 157.96 2 0.98563 0.83763 0.75739 2 Median NaN NaN NaN 0 0 Median 0.98563 0.83763 0.75739 2 0 Median 62103000 30618000 31485000 0 0 0 62103000 30618000 31485000 3298 785 3383 8745;8746 13746;13747 13746 2 ELNEDVSADVEER LHQDCLVLATAKHSRELNEDVSADVEERFH SRELNEDVSADVEERFHLGLFTDRATLYRM R E L E R F 1 1 1 2 0 0 4 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 13 0 1503.6689 B7ZLC9;Q8TEQ6 B7ZLC9 877 889 GEMIN5 Gem-associated protein 5 yes no 2 4.5814E-14 135.99 2 2 1.2577 1.1928 42.806 4 Median 1.6116 1.6883 5.2793 2 0 Median 0.92936 0.81199 10.531 2 0 Median 65841000 26166000 39675000 60994000 23460000 37534000 4846800 2706600 2140200 3299 1114 3384 8747;8748;8749;8750 13748;13749;13750;13751;13752;13753 13749 6 ELNITAAK LLELEMNSDLKAQLRELNITAAKEIEVGGG DLKAQLRELNITAAKEIEVGGGRKAIIIFV R E L A K E 2 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 858.48108 P62081;B5MCP9 P62081 42 49 RPS7 40S ribosomal protein S7 yes no 2 0.0092533 75.109 2 2 0.97585 0.96016 23.583 4 Median 1.0103 1.1752 0.73533 2 0 Median 0.94437 0.78133 1.3004 2 0 Median 611720000 307520000 304200000 534370000 269150000 265220000 77350000 38373000 38977000 3300 1631 3385 8751;8752;8753;8754 13754;13755;13756;13757;13758;13759 13754 6 ELNIVLPEFEK VHIWCPEGMKTSDIKELNIVLPEFEKTHLE SDIKELNIVLPEFEKTHLEHQQRIESKVCK K E L E K T 0 0 1 0 0 0 3 0 0 1 2 1 0 1 1 0 0 0 0 1 0 0 11 0 1329.718 Q71F23;A8K8D2;Q09GN1;A5D8X7 Q71F23 250 260 CENPU;MLF1IP Centromere protein U yes no 2 0.0003695 83.869 1 1 0.83542 0.75503 8.4804 2 Median 0.68148 0.71108 NaN 1 0 Median 1.0241 0.80169 NaN 1 0 Median 13937000 7212500 6724400 10074000 5356000 4718400 3862600 1856600 2006000 3301 1866 3386 8755;8756 13760;13761;13762 13760 3 ELNLEGTNLDK PVQYDGRQSICVKSRELNLEGTNLDKLAMG VKSRELNLEGTNLDKLAMGLNMTKILSPLL R E L D K L 0 0 2 1 0 0 2 1 0 0 3 1 0 0 0 0 1 0 0 0 0 0 11 0 1244.6248 Q9H5C8 Q9H5C8 98 108 yes yes 2 0.00048114 75.109 2 0.68869 0.68593 12.297 2 Median 0.68869 0.68593 12.297 2 0 Median NaN NaN NaN 0 0 Median 36665000 20371000 16294000 36665000 20371000 16294000 0 0 0 3302 2035 3387 8757;8758 13763;13764 13763 2 ELNLTEHFGK EEVETYFFEGLLKWRELNLTEHFGKFYKEV LLKWRELNLTEHFGKFYKEVIDKCQSFNQL R E L G K F 0 0 1 0 0 0 2 1 1 0 2 1 0 1 0 0 1 0 0 0 0 0 10 0 1186.5982 O75691 O75691 57 66 UTP20 Small subunit processome component 20 homolog yes yes 2;3 2.8128E-09 122.52 3 2 1.0982 1.16 6.8227 5 Median 1.0715 1.1494 6.6531 3 0 Median 1.4991 1.2043 5.3088 2 0 Median 122860000 59877000 62982000 112170000 55862000 56304000 10694000 4015700 6677900 3303 1412 3388 8759;8760;8761;8762;8763 13765;13766;13767;13768;13769;13770;13771;13772;13773 13767 9 ELNLVLSVR LDSLMSVEVRQTLERELNLVLSVREVRQLT RQTLERELNLVLSVREVRQLTLRKLQELSS R E L V R E 0 1 1 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 2 0 0 9 0 1041.6182 A0A0U1RQF0;P49327 A0A0U1RQF0 2167 2175 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0056175 66.27 1 1.0464 1.0458 NaN 1 Median 1.0464 1.0458 NaN 1 0 Median NaN NaN NaN 0 0 Median 11495000 4931800 6563400 11495000 4931800 6563400 0 0 0 3304 587 3389 8764 13774 13774 1 ELNNTCEPVVTQPK QDPVVRAQEIKTKIKELNNTCEPVVTQPKP KELNNTCEPVVTQPKPKIESPKLERTPNGP K E L P K P 0 0 2 0 1 1 2 0 0 0 1 1 0 0 2 0 2 0 0 2 0 0 14 0 1627.7876 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;A0A0A0MSM0;B4DY72;Q5TBM3 A0A024RDQ0 747 760 HSPH1 Heat shock protein 105 kDa yes no 2 0.0034421 57.019 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3305 390 3390 8765;8766 13775;13776 13775 2 ELNNYIMR TMIVQAISLLDDLDKELNNYIMRCREWYGW LLDDLDKELNNYIMRCREWYGWHFPELGKI K E L M R C 0 1 2 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 8 0 1051.5121 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 175 182 NOP58 Nucleolar protein 58 yes no 2 0.00077927 107.43 2 4 0.82063 1.1016 33.458 4 Linear 0.91725 1.0525 0.29495 2 0 Median 0.7234 0.59066 4.6178 2 0 Median 297330000 156930000 140400000 271260000 140860000 130390000 26076000 16070000 10006000 3306 2129 3391;3392 8767;8768;8769;8770;8771;8772 13777;13778;13779;13780;13781;13782;13783;13784;13785 13780 1956 9 ELNQHLR APVLSDDELVSMSVRELNQHLRGLTKEEVT ELVSMSVRELNQHLRGLTKEEVTRLKQRRR R E L L R G 0 1 1 0 0 1 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 908.48281 A0A024R804;A8WFP5;O60675;I3L2F8;A0A024R8X1;O15525 A0A024R804 36 42 MAFK;MAFG;hCG_1991559 Transcription factor MafK;Transcription factor MafG no no 2 0.024263 94.669 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64217000 64217000 0 64217000 64217000 0 0 0 0 3307 239;262 3393 8773 13786 13786 1 ELNQVMEQLGDAR EEVEMAKRRIDEINKELNQVMEQLGDARID NKELNQVMEQLGDARIDRQESSRQQRKAEI K E L A R I 1 1 1 1 0 2 2 1 0 0 2 0 1 0 0 0 0 0 0 1 0 0 13 0 1501.7195 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709 Q14683 476 488 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 6.7287E-11 113.69 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5871400 0 5871400 5871400 0 5871400 0 0 0 3308 1739 3394 8774;8775;8776 13787;13788;13789 13789 1569 3 ELNSTYSEQDPLLK KVKPYLPMIIAPLFRELNSTYSEQDPLLKN RELNSTYSEQDPLLKNLSQEIIELLKKLVG R E L L K N 0 0 1 1 0 1 2 0 0 0 3 1 0 0 1 2 1 0 1 0 0 0 14 0 1635.7992 O75691;B4DN27 O75691 2677 2690 UTP20 Small subunit processome component 20 homolog yes no 2 1.9302E-07 112.13 2 2 1.525 1.4107 3.7981 4 Median 1.2753 1.3815 3.1251 2 0 Median 1.7955 1.4454 3.6123 2 0 Median 94482000 38173000 56309000 75329000 30912000 44418000 19153000 7261500 11891000 3309 1412 3395 8777;8778;8779;8780 13790;13791;13792;13793;13794;13795;13796;13797;13798;13799;13800 13793 11 ELNTLCSELHVEPFQEEGETTILQLEK SLKERLIKSISVCQKELNTLCSELHVEPFQ PFQEEGETTILQLEKDLRTQVELMRKQKKE K E L E K D 0 0 1 0 1 2 7 1 1 1 5 1 0 1 1 1 3 0 0 1 0 0 27 0 3185.5438 A0A024RC67;O43663;B4E238 A0A024RC67 75 101 PRC1 Protein regulator of cytokinesis 1 yes no 3 6.6695E-20 85.982 1 2 1.1839 0.94756 31.722 3 Plateau 0.53365 0.52768 NaN 1 0 Median 1.1365 0.91001 5.7174 2 0 Median 61343000 30476000 30867000 19327000 11913000 7413900 42016000 18563000 23453000 3310 353 3396 8781;8782;8783 13801;13802;13803;13804;13805;13806 13805 6 ELPAAEPVLSPLEGTK TNMSRTLVNKEEPPKELPAAEPVLSPLEGT LPAAEPVLSPLEGTKMTVNNLHPRVTEEDI K E L T K M 2 0 0 0 0 0 3 1 0 0 3 1 0 0 3 1 1 0 0 1 0 0 16 0 1649.8876 Q96DI9;F6VRR5;B4E0L0;Q9BY77;B4DMM2 Q96DI9 262 277 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 0.00015124 65.179 2 2 1.0632 1.1521 13.807 4 Linear 1.0301 1.0748 9.93 2 0 Median 1.0867 0.87573 7.327 2 0 Median 47617000 21382000 26235000 33611000 14751000 18860000 14006000 6631000 7375000 3311 1063 3397 8784;8785;8786;8787 13807;13808;13809;13810 13808 4 ELPDPSQRPLGEPSAGLGEYLK SPGDSSKKRGPKPRKELPDPSQRPLGEPSA RPLGEPSAGLGEYLKGRKLDDTPSGAGKFP K E L L K G 1 1 0 1 0 1 3 3 0 0 4 1 0 0 4 2 0 0 1 0 0 0 22 1 2352.1961 Q9HC52;C9J6K3 Q9HC52 206 227 CBX8 Chromobox protein homolog 8 yes no 3 1.3885E-07 58.366 2 0.93431 1.1055 3.0475 2 Median 0.93431 1.1055 3.0475 2 0 Median NaN NaN NaN 0 0 Median 108010000 58316000 49699000 108010000 58316000 49699000 0 0 0 3312 2052 3398 8788;8789 13811;13812;13813;13814;13815 13814 5 ELPEFVVYQEIVETTK LDDPVFIHPSSVLFKELPEFVVYQEIVETT LPEFVVYQEIVETTKMYMKGVSSVEVQWIP K E L T K M 0 0 0 0 0 1 4 0 0 1 1 1 0 1 1 0 2 0 1 3 0 0 16 0 1922.9877 Q8IY37;F5H3Y4 Q8IY37 975 990 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.00015602 73.881 1 0.83219 0.81874 NaN 1 Median 0.83219 0.81874 NaN 1 0 Median NaN NaN NaN 0 0 Median 9062800 4648000 4414800 9062800 4648000 4414800 0 0 0 3313 1897 3399 8790 13816 13816 1 ELPEPILPADLHEALLK APPCDIAGLLKQFFRELPEPILPADLHEAL PEPILPADLHEALLKAQQLGTEEKNKATLL R E L L K A 2 0 0 1 0 0 3 0 1 1 5 1 0 0 3 0 0 0 0 0 0 0 17 0 1897.0561 H3BR51;Q3KRB8;Q6P4F7 H3BR51 127 143 ARHGAP11A;ARHGAP11B Rho GTPase-activating protein 11B;Rho GTPase-activating protein 11A yes no 3 0.0064145 24.793 1 1 2.1836 1.9786 43.803 2 Median 1.4299 1.4516 NaN 1 0 Median 3.3345 2.697 NaN 1 0 Median 11874000 4448500 7425800 9113300 3997300 5116100 2761000 451250 2309700 3314 1304 3400 8791;8792 13817;13818;13819 13819 3 ELPEYYELIR GRQLSEVFIQLPSRKELPEYYELIRKPVDF LPSRKELPEYYELIRKPVDFKKIKERIRNH K E L I R K 0 1 0 0 0 0 3 0 0 1 2 0 0 0 1 0 0 0 2 0 0 0 10 0 1323.6711 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;B4E0F1;B4DSI8;B3KNW7;A0A0U1RRF5;A0A0U1RRD6;A0A0U1RRF8;A0A0A0MSS5;F6UH26;A0A0U1RR09;B1ALG1;F6T8Q0;B1ALG2;Q8N9Q1;P51531;F6VDE0;B4DSC8;A0A0U1RRG6;A0A0U1RQU0;F6XE55;A0A0U1RQW7;A0A0U1RRN2;A0A0U1RR83;A0A0U1RQX3;A0A0U1RR26;B4DNT1;B1ALF6 A7E2E1 1493 1502 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.00035656 88.948 2 2 1.0518 0.99747 46.259 4 Median 0.64395 0.67807 9.3367 2 0 Median 1.7977 1.4902 11.52 2 0 Median 86071000 47364000 38707000 67117000 40494000 26623000 18955000 6870400 12084000 3315 695;1595 3401 8793;8794;8795;8796 13820;13821;13822;13823;13824;13825;13826 13823 7 ELPLAADALTFAEVSK GEVVGCFTPQSRRLRELPLAADALTFAEVS LPLAADALTFAEVSKDPKGLEWLWSPQIVG R E L S K D 4 0 0 1 0 0 2 0 0 0 3 1 0 1 1 1 1 0 0 1 0 0 16 0 1673.8876 Q9Y446 Q9Y446 579 594 PKP3 Plakophilin-3 yes yes 2 0.00012894 77.078 1 0.90633 0.9192 NaN 1 Median 0.90633 0.9192 NaN 1 0 Median NaN NaN NaN 0 0 Median 6601000 3152900 3448100 6601000 3152900 3448100 0 0 0 3316 2142 3402 8797 13827;13828 13828 2 ELPQVSFVK PQCAQMNEVMAELAKELPQVSFVKLEAEGV MAELAKELPQVSFVKLEAEGVPEVSEKYEI K E L V K L 0 0 0 0 0 1 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 9 0 1045.5808 A0A140VJK1;O76003 A0A140VJK1 59 67 GLRX3 Glutaredoxin-3 yes no 2 0.0017257 84.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18555000 0 18555000 18555000 0 18555000 0 0 0 3317 602 3403 8798 13829 13829 1 ELPRPVLEGQQSER EELEELGKEECFQNKELPRPVLEGQQSERT KELPRPVLEGQQSERTPNNRPDAPKEKKKK K E L E R T 0 2 0 0 0 2 3 1 0 0 2 0 0 0 2 1 0 0 0 1 0 0 14 1 1636.8533 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 527 540 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C no no 2;3 1.5232E-58 200.19 3 2 1.1434 1.2392 13.092 5 Median 0.91599 1.0759 12.092 3 0 Median 1.4867 1.3036 7.1609 2 0 Median 290650000 140480000 150170000 261750000 128850000 132890000 28904000 11629000 17275000 3318 2008;393 3404 8799;8800;8801;8802;8803 13830;13831;13832;13833;13834;13835;13836;13837 13833 8 ELPSFLGK KFKLNKSELKELLTRELPSFLGKRTDEAAF LKELLTRELPSFLGKRTDEAAFQKLMSNLD R E L G K R 0 0 0 0 0 0 1 1 0 0 2 1 0 1 1 1 0 0 0 0 0 0 8 0 889.49092 P26447 P26447 41 48 S100A4 Protein S100-A4 yes yes 2 0.028279 53.351 1 0.71021 0.80101 NaN 1 Median 0.71021 0.80101 NaN 1 0 Median NaN NaN NaN 0 0 Median 66759000 38784000 27975000 66759000 38784000 27975000 0 0 0 3319 1520 3405 8804 13838 13838 1 ELPTAFDYVEFTR YCVSHMKPYVDGKGRELPTAFDYVEFTRSL GRELPTAFDYVEFTRSLFVN__________ R E L T R S 1 1 0 1 0 0 2 0 0 0 1 0 0 2 1 0 2 0 1 1 0 0 13 0 1586.7617 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1 A0A0D9SF54 2440 2452 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.00021605 77.305 2 1 1.8928 1.9364 54.507 3 Median 1.765 1.8157 9.1034 2 0 Median 5.4044 4.6363 NaN 1 0 Median 44514000 15264000 29250000 41171000 14775000 26396000 3342600 488460 2854100 3320 523 3406 8805;8806;8807 13839;13840;13841;13842 13839 4 ELPTVVFR VPKENLESWLNYLKKELPTVVFRASTKPKD WLNYLKKELPTVVFRASTKPKDKGKITKRV K E L F R A 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 2 0 0 8 0 959.54402 A0A024R2Z6;Q9BVP2 A0A024R2Z6 186 193 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0041914 94.407 2 1 0.78086 0.91171 5.4569 3 Median 0.75882 0.88405 4.3565 2 0 Median 1.1214 0.95578 NaN 1 0 Median 615630000 344040000 271590000 579150000 326910000 252250000 36474000 17134000 19340000 3321 125 3407 8808;8809;8810 13843;13844;13845;13846;13847 13844 5 ELQAHGADELLK ______________________________ FYKELQAHGADELLKRVYGSFLVNPESGYN K E L L K R 2 0 0 1 0 1 2 1 1 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1322.683 Q9BXV5;Q53R19;O15144;C9JTV5;G5E9J0 Q9BXV5 11 22 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 4.8092E-18 145.46 1 1.8354 1.8632 NaN 1 Median 1.8354 1.8632 NaN 1 0 Median NaN NaN NaN 0 0 Median 29830000 9913100 19917000 29830000 9913100 19917000 0 0 0 3322 1375 3408 8811 13848 13848 1 ELQCLTPR ADVIQATGDAICIFRELQCLTPRGRYDIRI DAICIFRELQCLTPRGRYDIRIYPTFLHLH R E L P R G 0 1 0 0 1 1 1 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 8 0 1015.5121 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 204 211 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0012974 110.31 2 2 0.94761 0.84543 16.532 4 Median 0.84215 0.98284 20.793 2 0 Median 0.94761 0.81263 5.0916 2 0 Median 627580000 349960000 277620000 570930000 321990000 248950000 56642000 27973000 28669000 3323 167 3409 8812;8813;8814;8815 13849;13850;13851;13852;13853;13854;13855;13856;13857 13850 9 ELQDAFSR SDSESESDESLVTDRELQDAFSRGLLKPGL ESLVTDRELQDAFSRGLLKPGLNVVLEGPK R E L S R G 1 1 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 964.46141 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 22 29 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.0017476 106.14 2 2 1.0155 0.9837 14.915 4 Median 0.96422 1.1209 1.1673 2 0 Median 1.047 0.86605 0.71191 2 0 Median 523560000 251040000 272530000 490830000 234740000 256080000 32738000 16295000 16443000 3324 1316 3410 8816;8817;8818;8819 13858;13859;13860;13861;13862;13863;13864 13859 7 ELQEVIQQQNEK EKLNQALCLRYKNEKELQEVIQQQNEKILE NEKELQEVIQQQNEKILEQIDKSGELISLR K E L E K I 0 0 1 0 0 4 3 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1484.7471 A8K8N3;Q96R06;K7ELG0 A8K8N3 1043 1054 SPAG5 Sperm-associated antigen 5 yes no 2 2.9187E-16 125.74 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3325 779 3411 8820 13865 13865 1 ELQGDGPPSSPTNDPTVK GEDPAQPRKYKKKKKELQGDGPPSSPTNDP GDGPPSSPTNDPTVKYETQPRFITATGGTL K E L V K Y 0 0 1 2 0 1 1 2 0 0 1 1 0 0 4 2 2 0 0 1 0 0 18 0 1837.8694 Q12873 Q12873 704 721 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 0.00041013 58.32 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3326 1701 3412 8821 13866 13866 1 ELQGFLDGVK DACIRERFVDSKRARELQGFLDGVKKGQEQ SKRARELQGFLDGVKKGQEQVLGDLSMILC R E L V K K 0 0 0 1 0 1 1 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1104.5815 A0A0X1KG71;Q8WX92 A0A0X1KG71 330 339 NELFB Negative elongation factor B yes no 2 5.5794E-05 85.862 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3327 594 3413 8822 13867 13867 1 ELQIPALSTR QEDKEPISENIEVSKELQIPALSTRDNENQ IEVSKELQIPALSTRDNENQCDYRTQNVLG K E L T R D 1 1 0 0 0 1 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 10 0 1126.6346 Q562F6;B7Z7S9 Q562F6 666 675 SGOL2 Shugoshin-like 2 yes no 2 2.7715E-05 92.051 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3328 1795 3414 8823 13868 13868 1 ELQISLK CTERHPAEWRLALEKELQISLKQVLTALLN EWRLALEKELQISLKQVLTALLNSRTTSHL K E L L K Q 0 0 0 0 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 7 0 829.49092 Q03164;H7BYJ6 Q03164 1639 1645 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.024379 88.029 4 0.76071 0.74995 NaN 1 Median 0.76071 0.74995 NaN 1 0 Median NaN NaN NaN 0 0 Median 27385000 11874000 15511000 27385000 11874000 15511000 0 0 0 3329 1680 3415 8824;8825;8826;8827 13869;13870;13871;13872 13871 4 ELQLLNDK NVVAETLSALENKEKELQLLNDKVETEQAE ALENKEKELQLLNDKVETEQAEIQELKKSN K E L D K V 0 0 1 1 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 971.52876 P49454 P49454 912 919 CENPF Centromere protein F yes yes 2 0.0092533 75.109 2 1.3231 1.3295 1.4608 2 Median 1.3231 1.3295 1.4608 2 0 Median NaN NaN NaN 0 0 Median 20355000 10654000 9700500 20355000 10654000 9700500 0 0 0 3330 1581 3416 8828;8829 13873;13874 13874 2 ELQLLSETLSLEK QELKKSNHLLEDSLKELQLLSETLSLEKKE LKELQLLSETLSLEKKEMSSIISLNKREIE K E L E K K 0 0 0 0 0 1 3 0 0 0 5 1 0 0 0 2 1 0 0 0 0 0 13 0 1501.8239 P49454 P49454 943 955 CENPF Centromere protein F yes yes 2 5.9069E-09 119.27 2 1 1.1836 1.2171 1.0087 2 Median 1.1836 1.2171 1.0087 2 0 Median NaN NaN NaN 0 0 Median 30942000 13749000 17193000 28584000 13749000 14835000 2358100 0 2358100 3331 1581 3417 8830;8831;8832 13875;13876;13877;13878;13879 13877 5 ELQSAVPR LRLQPHPQLSPEIRRELQSAVPRDVEDVPI LSPEIRRELQSAVPRDVEDVPITVE_____ R E L P R D 1 1 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 8 0 898.48723 Q13895 Q13895 420 427 BYSL Bystin yes yes 2 0.006912 85.212 1 1.1241 1.1779 NaN 1 Median 1.1241 1.1779 NaN 1 0 Median NaN NaN NaN 0 0 Median 39224000 19188000 20035000 39224000 19188000 20035000 0 0 0 3332 1724 3418 8833 13880 13880 1 ELQSQISDTSVVLSMDNSR DEINFLRQLYEEEIRELQSQISDTSVVLSM QISDTSVVLSMDNSRSLDMDSIIAEVKAQY R E L S R S 0 1 1 2 0 2 1 0 0 1 2 0 1 0 0 5 1 0 0 2 0 0 19 0 2108.0056 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 234 252 KRT8 Keratin, type II cytoskeletal 8 yes no 2 1.5479E-30 143.46 4 3 1.4459 1.4714 29.908 6 Median 1.428 1.6732 39.964 3 0 Plateau 1.6191 1.3347 25.151 3 0 Median 381040000 160850000 220190000 359740000 151840000 207900000 21300000 9003800 12297000 + 3333 1156 3419;3420 8834;8835;8836;8837;8838;8839;8840 13881;13882;13883;13884;13885;13886;13887;13888;13889;13890;13891;13892;13893;13894 13882 863 14 ELQSVEQEVR LLGSLYALGIPKASKELQSVEQEVRWRMRK PKASKELQSVEQEVRWRMRKLKYKHLAFLA K E L V R W 0 1 0 0 0 2 3 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 10 0 1215.6095 D3DVL7;B4DU42;Q969Z0;C9IZN7;B3KM73;C9J7P5 D3DVL7 110 119 TBRG4 Protein TBRG4 yes no 2 6.0391E-08 113.74 2 0.81542 0.87458 48.406 2 Median 0.81542 0.87458 48.406 2 0 Median NaN NaN NaN 0 0 Median 53428000 31778000 21650000 53428000 31778000 21650000 0 0 0 3334 1036 3421 8841;8842 13895;13896;13897;13898 13897 4 ELQTTLVR IIEDLGVHFLLYVLKELQTTLVRGYQVHVL FLLYVLKELQTTLVRGYQVHVLTFTVHMLL K E L V R G 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 8 0 958.54475 O75691 O75691 1887 1894 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0083247 79.116 2 1 1.2567 1.3249 4.5941 3 Median 1.2326 1.3405 6.4265 2 0 Median 1.586 1.3249 NaN 1 0 Median 98497000 40697000 57800000 95175000 39335000 55840000 3321400 1361900 1959500 3335 1412 3422 8843;8844;8845 13899;13900;13901;13902;13903 13903 5 ELRDEEQTAESIK LACCVAPTNPRFGGKELRDEEQTAESIKNQ GKELRDEEQTAESIKNQMTVKEWEKVFEMS K E L I K N 1 1 0 1 0 1 4 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 13 1 1546.7475 Q14566;Q4ZG57 Q14566 314 326 MCM6 DNA replication licensing factor MCM6 yes no 2 9.7563E-16 124.21 2 1.7929 1.9252 NaN 1 Median 1.7929 1.9252 NaN 1 0 Median NaN NaN NaN 0 0 Median 13777000 5257100 8519600 13777000 5257100 8519600 0 0 0 3336 1734 3423 8846;8847 13904;13905 13905 2 ELSAALQDKK KATQEWLEKQAQLEKELSAALQDKKCLEEK AQLEKELSAALQDKKCLEEKNEILQGKLSQ K E L K K C 2 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1101.603 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 365 374 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.040423 45.161 2 1.5639 1.3481 2.4612 2 Median NaN NaN NaN 0 0 Median 1.5639 1.3481 2.4612 2 0 Median 7887000 2841300 5045800 0 0 0 7887000 2841300 5045800 3337 186;1747;718 3424 8848;8849 13906;13907;13908;13909 13907 4 ELSAVTFPDIIR GGEPDFHAVEPYTKKELSAVTFPDIIRNYK TKKELSAVTFPDIIRNYKVMAAENIPENPL K E L I R N 1 1 0 1 0 0 1 0 0 2 1 0 0 1 1 1 1 0 0 1 0 0 12 0 1359.7398 J3KPM9;P42224 J3KPM9 640 651 STAT1 Signal transducer and activator of transcription;Signal transducer and activator of transcription 1-alpha/beta yes no 2 4.1893E-05 96.342 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19619000 0 19619000 18766000 0 18766000 852300 0 852300 3338 1326 3425 8850;8851;8852;8853 13910;13911;13912;13913 13910 4 ELSDEIQVQVFEK KAVDPTSGQLYGLARELSDEIQVQVFEKLQ ARELSDEIQVQVFEKLQLLNPEIEAEQILM R E L E K L 0 0 0 1 0 2 3 0 0 1 1 1 0 1 0 1 0 0 0 2 0 0 13 0 1562.7828 Q8TEM1 Q8TEM1 1273 1285 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0059885 60.255 1 0.74554 0.83971 NaN 1 Median 0.74554 0.83971 NaN 1 0 Median NaN NaN NaN 0 0 Median 58591000 29799000 28792000 58591000 29799000 28792000 0 0 0 3339 1937 3426 8854 13914 13914 0 ELSDSVTLSSSDR DPILVQTLWQDIIEKELSDSVTLSSSDRMH EKELSDSVTLSSSDRMHALSLKIVLLGKIY K E L D R M 0 1 0 2 0 0 1 0 0 0 2 0 0 0 0 5 1 0 0 1 0 0 13 0 1394.6525 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1190 1202 NUP155 Nuclear pore complex protein Nup155 yes no 2 2.8294E-09 122.42 2 1 1.2379 1.2013 5.7019 2 Median 1.0564 1.1538 NaN 1 0 Median 1.4505 1.2507 NaN 1 0 Median 58115000 19241000 38874000 56450000 18598000 37852000 1664900 643190 1021700 3340 39 3427 8855;8856;8857 13915;13916;13917 13916 3 ELSENTPHLSDEALMGLSVR MSVDPLSSKALKIKRELSENTPHLSDEALM TPHLSDEALMGLSVRELNRHLRGLSAEEVT R E L V R E 1 1 1 1 0 0 3 1 1 0 4 0 1 0 1 3 1 0 0 1 0 0 20 0 2197.0685 Q9ULX9;B0QY70 Q9ULX9 16 35 MAFF Transcription factor MafF yes no 3 1.3245E-06 56.719 2 1.4455 1.5331 0.75625 2 Median 1.4455 1.5331 0.75625 2 0 Median NaN NaN NaN 0 0 Median 72490000 28972000 43517000 72490000 28972000 43517000 0 0 0 3341 2112 3428 8858;8859 13918;13919;13920 13919 1938 3 ELSEQLGQAER RLSVEDAVKVGLVGRELSEQLGQAERAAAG LVGRELSEQLGQAERAAAGYPDPYSRASLS R E L E R A 1 1 0 0 0 2 3 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1258.6153 A0A075B730;A0A087X1U6;P58107 A0A075B730 1287 1297 EPPK1 Epiplakin no no 2 3.1071E-05 101.66 2 2 1.4762 1.4495 19.75 2 Median 1.5002 1.6667 NaN 1 0 Median 1.4525 1.2606 NaN 1 0 Median 67259000 19014000 48245000 63877000 18259000 45618000 3382000 754980 2627000 3342 397;1622 3429 8860;8861;8862;8863 13921;13922;13923;13924 13921 3 ELSESVQQQSTPVPLISPK LNLNLDRSKAEMDLKELSESVQQQSTPVPL SVQQQSTPVPLISPKRQIRSRFQLNLDKTI K E L P K R 0 0 0 0 0 3 2 0 0 1 2 1 0 0 3 4 1 0 0 2 0 0 19 0 2066.0895 A0A087WVZ6;A6H8Y8;A0A087WV57;Q5JV90;H7C4X9;A0A087WYS3;Q9ULU4 A0A087WVZ6 526 544 ZMYND8;DKFZp564P1772 Protein kinase C-binding protein 1 no no 2 0.012711 43.382 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3343 422;1317 3430 8864 13925 13925 1 ELSFVLDYINQSPK SVKLPKSSSQEVEAKELSFVLDYINQSPKC KELSFVLDYINQSPKCIAFGNEGVYVAAVR K E L P K C 0 0 1 1 0 1 1 0 0 1 2 1 0 1 1 2 0 0 1 1 0 0 14 0 1651.8457 A8K330;Q8IWA0 A8K330 146 159 WDR75 WD repeat-containing protein 75 yes no 2 6.5662E-23 150.46 2 2 1.0846 1.0606 2.835 4 Linear 0.94575 1.0515 1.947 2 0 Median 1.2514 1.0064 1.0585 2 0 Median 167860000 85309000 82556000 123510000 65367000 58147000 44351000 19942000 24409000 3344 716 3431 8865;8866;8867;8868 13926;13927;13928;13929;13930;13931;13932;13933;13934 13926 9 ELSGLGSALK LRLFVALQGCMDKGKELSGLGSALKNPFGN MDKGKELSGLGSALKNPFGNAGLLLGEAGK K E L L K N 1 0 0 0 0 0 1 2 0 0 3 1 0 0 0 2 0 0 0 0 0 0 10 0 973.54441 Q53HR2;B4DEA8;P49748;B3KPA6;B3KPX1;G3V1M7 Q53HR2 483 492 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.003374 66.27 1 1 0.57963 0.45333 NaN 1 Median NaN NaN NaN 0 0 Median 0.57963 0.45333 NaN 1 0 Median 2089700 1386400 703360 0 0 0 2089700 1386400 703360 3345 965 3432 8869;8870 13935;13936 13935 2 ELSLAGNELGDEGAR CGDLCRVLRAKESLKELSLAGNELGDEGAR ELSLAGNELGDEGARLLCETLLEPGCQLES K E L A R L 2 1 1 1 0 0 3 3 0 0 3 0 0 0 0 1 0 0 0 0 0 0 15 0 1529.7322 A0A024RC87;A0A140VJT8;P13489;H0YCR7 A0A024RC87 283 297 RNH1 Ribonuclease inhibitor yes no 2 1.3221E-15 119.74 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13920000 0 13920000 13920000 0 13920000 0 0 0 3346 355 3433 8871;8872 13937;13938 13938 2 ELSPLFLR RALTKFPERVEPRSRELSPLFLRFINNEYY RVEPRSRELSPLFLRFINNEYYPADLQVAP R E L L R F 0 1 0 0 0 0 1 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 8 0 973.55967 O75691 O75691 841 848 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0077064 81.784 2 1.2079 1.2245 NaN 1 Median 1.2079 1.2245 NaN 1 0 Median NaN NaN NaN 0 0 Median 57836000 11995000 45841000 57836000 11995000 45841000 0 0 0 3347 1412 3434 8873;8874 13939;13940;13941 13939 3 ELSQLHSMSSK E L S K 0 0 0 0 0 1 1 0 1 0 2 1 1 0 0 4 0 0 0 0 0 0 11 0 1245.6023 REV__C9K080 yes no 3 0.002504 41.704 2 0.76604 0.77196 NaN 1 Median 0.76604 0.77196 NaN 1 0 Median NaN NaN NaN 0 0 Median 7423700 3724600 3699100 7423700 3724600 3699100 0 0 0 + 3348 2172 3435 8875;8876 13942;13943;13944 13943 3 ELSQLQAAQEK KSCKQLEEEKEILQKELSQLQAAQEKQKTG ILQKELSQLQAAQEKQKTGTVMDTKVDELT K E L E K Q 2 0 0 0 0 3 2 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1243.6408 P49454 P49454 2911 2921 CENPF Centromere protein F yes yes 2 7.936E-31 179.09 2 2 1.2855 1.1976 0.81393 2 Median 1.1272 1.2046 NaN 1 0 Median 1.466 1.1908 NaN 1 0 Median 32053000 17789000 14264000 29161000 16644000 12517000 2892200 1145500 1746700 3349 1581 3436 8877;8878;8879;8880 13945;13946;13947;13948;13949;13950 13946 6 ELSQNTDESGLNDEAIAK SVQRSNKKMVASKRKELSQNTDESGLNDEA QNTDESGLNDEAIAKQLQLDEDAELERQLH K E L A K Q 2 0 2 2 0 1 3 1 0 1 2 1 0 0 0 2 1 0 0 0 0 0 18 0 1932.8912 P35251;Q14756 P35251 188 205 RFC1;LLDBP Replication factor C subunit 1 yes no 2 8.3995E-13 100.22 2 1 0.51252 0.45373 26.397 2 Median 0.3843 0.37647 NaN 1 0 Median 0.68351 0.54684 NaN 1 0 Median 37580000 20205000 17375000 30452000 16022000 14430000 7128300 4182900 2945400 3350 1542 3437 8881;8882;8883 13951;13952;13953;13954 13953 4 ELSTTLNADEAVTR RIPAVKEKISKFFGKELSTTLNADEAVTRG KELSTTLNADEAVTRGCALQCAILSPAFKV K E L T R G 2 1 1 1 0 0 2 0 0 0 2 0 0 0 0 1 3 0 0 1 0 0 14 0 1518.7526 O14992;A0A087WTS8;A0A087WYC1;Q59GF8;V9HW33;B4DH02;P34932;B4DT47;B4DIZ3;B4DUS3;B4E354;B4E0H6 O14992 361 374 HS24/p52;HSPA4;HEL-S-5a Heat shock 70 kDa protein 4 yes no 2 3.2073E-06 103.21 2 1.9414 1.9325 NaN 1 Median 1.9414 1.9325 NaN 1 0 Median NaN NaN NaN 0 0 Median 12233000 2700700 9532200 12233000 2700700 9532200 0 0 0 3351 404 3438 8884;8885 13955;13956;13957;13958 13957 4 ELSVEEQIK QKSQDVELWEGEVVKELSVEEQIKRNRYYD EGEVVKELSVEEQIKRNRYYDEDEDEE___ K E L I K R 0 0 0 0 0 1 3 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1073.5605 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 578 586 LIMA1 LIM domain and actin-binding protein 1 yes no 2 2.2298E-05 116.25 2 2.3585 2.636 NaN 1 Median 2.3585 2.636 NaN 1 0 Median NaN NaN NaN 0 0 Median 134980000 65811000 69167000 134980000 65811000 69167000 0 0 0 3352 1010 3439 8886;8887 13959;13960;13961;13962 13960 4 ELTAPDENIPAK FRTYNASITLQQQLKELTAPDENIPAKILS QLKELTAPDENIPAKILSYNRANRAVAILC K E L A K I 2 0 1 1 0 0 2 0 0 1 1 1 0 0 2 0 1 0 0 0 0 0 12 0 1296.6561 P11387;B9EG90;Q9BVT2 P11387 604 615 TOP1 DNA topoisomerase 1 yes no 2 4.2452E-08 115.82 2 2 1.2715 1.2829 3.3653 4 Median 1.0632 1.27 0.043514 2 0 Median 1.5261 1.3292 3.6358 2 0 Median 3158500000 1470700000 1687800000 2729100000 1296400000 1432700000 429430000 174260000 255170000 3353 1470 3440 8888;8889;8890;8891 13963;13964;13965;13966;13967;13968;13969;13970;13971;13972;13973;13974 13964 12 ELTAVVQK TRTQNVLGEKGRRIRELTAVVQKRFGFPEG EKGRRIRELTAVVQKRFGFPEGSVELYAEK R E L Q K R 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 886.51238 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;A7E2S3;E9PQ96;E9PJH4;E9PK82 P23396 68 75 RPS3 40S ribosomal protein S3 yes no 2 0.010603 71.852 2 1.2264 1.4007 11.452 2 Median 1.2264 1.4007 11.452 2 0 Median NaN NaN NaN 0 0 Median 300780000 142710000 158070000 300780000 142710000 158070000 0 0 0 3354 1511 3441 8892;8893 13975;13976;13977;13978;13979 13976 5 ELTELAR SYHSYVIGFVVPNQKELTELARKKGLKGTW GFVVPNQKELTELARKKGLKGTWEELCNSC K E L A R K 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 830.44978 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6;Q6PIM8 B3KN05 620 626 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.027742 73.039 1 1.3002 1.3062 NaN 1 Median 1.3002 1.3062 NaN 1 0 Median NaN NaN NaN 0 0 Median 17258000 8236600 9021500 17258000 8236600 9021500 0 0 0 3355 150 3442 8894 13980 13980 1 ELTGGGTTFSVR CAQKAGLYMKMEPVKELTGGGTTFSVRKTA PVKELTGGGTTFSVRKTAYCDVHTPPGCTR K E L V R K 0 1 0 0 0 0 1 3 0 0 1 0 0 1 0 1 3 0 0 1 0 0 12 0 1223.6146 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41 A0A024R4W4 369 380 BRD1 Bromodomain-containing protein 1 yes no 2 4.2647E-08 115.78 2 0.84729 0.90259 4.0824 2 Median 0.84729 0.90259 4.0824 2 0 Median NaN NaN NaN 0 0 Median 55473000 28184000 27290000 55473000 28184000 27290000 0 0 0 3356 162 3443 8895;8896 13981;13982;13983;13984 13984 4 ELTLENSELK QLLLEEIKSSKDQLKELTLENSELKKSLDC KDQLKELTLENSELKKSLDCMHKDQVEKEG K E L L K K 0 0 1 0 0 0 3 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 10 0 1174.6081 P49454;Q9UHT7;A0A087WTY4 P49454 2762 2771 CENPF Centromere protein F yes no 2 0.00012052 96.668 2 1.2929 1.3112 NaN 1 Median 1.2929 1.3112 NaN 1 0 Median NaN NaN NaN 0 0 Median 17680000 5255400 12425000 17680000 5255400 12425000 0 0 0 3357 1581 3444 8897;8898 13985;13986 13986 2 ELTMASLPFTFDVER FIFLRLNVLREYLERELTMASLPFTFDVER ELTMASLPFTFDVERSIDDWVFMCFFVGND R E L E R S 1 1 0 1 0 0 2 0 0 0 2 0 1 2 1 1 2 0 0 1 0 0 15 0 1754.8549 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 240 254 XRN2 5-3 exoribonuclease 2 yes no 2 2.3261E-07 96.745 3 1.3534 1.3835 NaN 1 Median 1.3534 1.3835 NaN 1 0 Median NaN NaN NaN 0 0 Median 20745000 7962300 12782000 20745000 7962300 12782000 0 0 0 3358 903 3445 8899;8900;8901 13987;13988;13989 13988 726 3 ELTNQQEASVER KKYRQLTAHLQDVNRELTNQQEASVERQQQ VNRELTNQQEASVERQQQPPPETFDFKIKF R E L E R Q 1 1 1 0 0 2 3 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1402.6688 Q6AWB3;Q6AWB1;E7EX90;Q6MZZ3;Q14203;O95654;Q59F36;H8Y0Y3 Q6AWB3 496 507 DKFZp686E191;DKFZp686E0752;DCTN1;DKFZp686I0746;DCTN1/ALK fusion Dynactin subunit 1 yes no 2 0.00039609 89.403 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15577000 0 15577000 15577000 0 15577000 0 0 0 3359 1226 3446 8902 13990 13990 1 ELTTEIDNNIEQISSYK QNRKDAEAWFNEKSKELTTEIDNNIEQISS TTEIDNNIEQISSYKSEITELRRNVQALEI K E L Y K S 0 0 2 1 0 1 3 0 0 3 1 1 0 0 0 2 2 0 1 0 0 0 17 0 1995.9637 CON__P13645;P13645 CON__P13645 346 362 KRT10 Keratin, type I cytoskeletal 10 yes no 2 4.5675E-166 255.16 3 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 909260000 909260000 0 469500000 469500000 0 439770000 439770000 0 + 3360 1161 3447 8903;8904;8905;8906;8907;8908;8909 13991;13992;13993;13994;13995;13996;13997 13995 7 ELTVDNSFEFEK RKVRWTKAFRKAAGKELTVDNSFEFEKRRN AGKELTVDNSFEFEKRRNEPIKYQRELWNK K E L E K R 0 0 1 1 0 0 3 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 12 0 1456.6722 B3KP47;A0A024R5U8;Q9UHA3;H3BMQ2 B3KP47 62 73 C15orf15;RSL24D1 Probable ribosome biogenesis protein RLP24 yes no 2 1.8516E-22 150.61 2 2 1.0389 1.1692 15.932 4 Linear 1.007 1.1313 0.46704 2 0 Median 1.0665 0.85857 0.58634 2 0 Median 231910000 108600000 123300000 186400000 87460000 98942000 45505000 21144000 24361000 3361 188 3448 8910;8911;8912;8913 13998;13999;14000;14001;14002;14003;14004;14005;14006 14001 9 ELVEPLTPSGEAPNQALLR HIVRKRTLRRLLQERELVEPLTPSGEAPNQ PLTPSGEAPNQALLRILKETEFKKIKVLGS R E L L R I 2 1 1 0 0 1 3 1 0 0 4 0 0 0 3 1 1 0 0 1 0 0 19 0 2033.0793 Q59FL8;Q504U8;E7BSV0;E9PFD7;F2YGG7;Q2TTR7;A9CB80;A8K2T7;P00533 Q59FL8 558 576 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor yes no 2 5.0509E-06 68.034 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9090100 0 9090100 9090100 0 9090100 0 0 0 3362 713 3449 8914;8915 14007;14008;14009 14009 3 ELVGEFLQFVQLDK ______________________________ KELVGEFLQFVQLDKEASDPFSLNELLDEL K E L D K E 0 0 0 1 0 2 2 1 0 0 3 1 0 2 0 0 0 0 0 2 0 0 14 0 1663.8821 Q86XI2;B3KRQ2;F8WE06 Q86XI2 14 27 NCAPG2 Condensin-2 complex subunit G2 yes no 2 1.6624E-132 255.3 2 1 0.86458 0.97314 44.434 3 Median 0.85988 0.97139 0.25537 2 0 Median 2.5542 2.0971 NaN 1 0 Median 176830000 88931000 87899000 164490000 84715000 79772000 12343000 4216000 8126900 3363 1887 3450 8916;8917;8918 14010;14011;14012;14013;14014 14013 5 ELVGPPLAETVFTPK AKKCVSCQNLNPSNKELVGPPLAETVFTPK ELVGPPLAETVFTPKTSPENVQDRFALVTP K E L P K T 1 0 0 0 0 0 2 1 0 0 2 1 0 1 3 0 2 0 0 2 0 0 15 0 1596.8763 P49792 P49792 1384 1398 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 2.1488E-05 88.803 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7396300 0 7396300 7396300 0 7396300 0 0 0 3364 1588 3451 8919 14015 14015 1 ELVLALYDYQEK SCRQQVAPTDDETGKELVLALYDYQEKSPR TGKELVLALYDYQEKSPREVTMKKGDILTL K E L E K S 1 0 0 1 0 1 2 0 0 0 3 1 0 0 0 0 0 0 2 1 0 0 12 0 1482.7606 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 970 981 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.015754 52.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 898650 0 898650 0 0 0 898650 0 898650 3365 523 3452 8920 14016 14016 1 ELVNDDEDIDWVQTEK LKKTDRIYAMKVVKKELVNDDEDIDWVQTE LVNDDEDIDWVQTEKHVFEQASNHPFLVGL K E L E K H 0 0 1 4 0 1 3 0 0 1 1 1 0 0 0 0 1 1 0 2 0 0 16 0 1946.8745 B5BUK7;B2RCZ4;P41743 B5BUK7 279 294 PRKCI Protein kinase C;Protein kinase C iota type yes no 2 0.0076601 48.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3366 884 3453 8921 14017 14017 1 ELVPSSDPIVFVVGAFAHGK KVGTSFSIPVVSDVRELVPSSDPIVFVVGA SDPIVFVVGAFAHGKVSVEYTEKMVSISNY R E L G K V 2 0 0 1 0 0 1 2 1 1 1 1 0 2 2 2 0 0 0 4 0 0 20 0 2068.0993 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2 A8K6D2 188 207 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 3 4.7643E-10 98.062 2 1 1.1239 1.1576 9.126 3 Median 1.0996 1.1966 4.6817 2 0 Median 1.2587 1.0327 NaN 1 0 Median 112970000 49792000 63174000 75800000 36340000 39460000 37165000 13452000 23713000 3367 759 3454 8922;8923;8924 14018;14019;14020;14021;14022;14023;14024;14025;14026;14027 14025 10 ELVSCSNCTDYQAR KLDLEAWFPGSGAFRELVSCSNCTDYQARR RELVSCSNCTDYQARRLRIRYGQTKKMMDK R E L A R R 1 1 1 1 2 1 1 0 0 0 1 0 0 0 0 2 1 0 1 1 0 0 14 0 1701.7087 Q0VGA5;Q53HA4;Q5T5C7;P49591 Q0VGA5 391 404 SARS Serine--tRNA ligase, cytoplasmic yes no 2 1.9674E-06 101.39 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8155800 0 8155800 8155800 0 8155800 0 0 0 3368 1584 3455 8925;8926 14028;14029;14030 14028 3 ELVSDANQHVK CRENVIMSQILPCIKELVSDANQHVKSALA PCIKELVSDANQHVKSALASVIMGLSPILG K E L V K S 1 0 1 1 0 1 1 0 1 0 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1238.6255 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;C9J9C1 B4DQY1 298 308 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 1.2885E-05 107.69 1 2 1.3333 1.3743 33.088 3 Plateau 1.3333 1.3744 NaN 1 0 Median 0.95662 0.77485 0.52332 2 0 Median 18961000 9404100 9557100 14592000 7090700 7501300 4369300 2313500 2055800 3369 723 3456 8927;8928;8929 14031;14032;14033;14034 14031 4 ELVSDLSSQFVISPPALR RKAKAKKIEVPAQLKELVSDLSSQFVISPP SDLSSQFVISPPALRSRQKNTSNKNKLEDE K E L L R S 1 1 0 1 0 1 1 0 0 1 3 0 0 1 2 4 0 0 0 2 0 0 18 0 1957.052 Q8WYP5;B3KRD0 Q8WYP5 2142 2159 AHCTF1 Protein ELYS yes no 2 8.9617E-08 109 2 0.885 0.89819 0.39944 2 Median 0.885 0.89819 0.39944 2 0 Median NaN NaN NaN 0 0 Median 21368000 11809000 9559100 21368000 11809000 9559100 0 0 0 3370 1945 3457 8930;8931 14035;14036;14037 14036 3 ELVSDTNQHVK DRETIIMNQILPYIKELVSDTNQHVKSALA PYIKELVSDTNQHVKSALASVIMGLSTILG K E L V K S 0 0 1 1 0 1 1 0 1 0 1 1 0 0 0 1 1 0 0 2 0 0 11 0 1268.6361 A8K8B0;P30154;B7Z1G3;H0YDG7 A8K8B0 344 354 PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 2 8.6219E-08 106.42 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10274000 0 10274000 10274000 0 10274000 0 0 0 3371 774 3458 8932;8933 14038;14039 14038 2 ELVSSSSSGSDSDSEVDK ______________________________ SSSSSGSDSDSEVDKKLKRKKQVAPEKPVK K E L D K K 0 0 0 3 0 0 2 1 0 0 1 1 0 0 0 8 0 0 0 2 0 0 18 0 1813.7701 Q6IBA2;Q59G24;P53999;B7Z1Z0;D6RC37;D6R970 Q6IBA2 6 23 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2 1.6541E-107 218.5 2 2 0.89948 0.84852 85.5 4 Median 1.7189 1.8403 19.557 2 0 Median 0.53063 0.42491 7.8767 2 0 Median 96266000 40017000 56249000 70144000 23195000 46949000 26122000 16822000 9300200 3372 1608 3459 8934;8935;8936;8937 14040;14041;14042;14043;14044;14045;14046;14047 14042 8 ELVSSSSSGSDSDSEVDKK ______________________________ SSSSGSDSDSEVDKKLKRKKQVAPEKPVKK K E L K K L 0 0 0 3 0 0 2 1 0 0 1 2 0 0 0 8 0 0 0 2 0 0 19 1 1941.8651 Q6IBA2;Q59G24;P53999;B7Z1Z0;D6RC37;D6R970 Q6IBA2 6 24 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2;3 2.5649E-16 145.43 4 3 1.3419 1.5275 72.118 7 Median 1.4599 1.6954 14.883 4 0 Median 0.53692 0.46042 3.8813 3 0 Median 62933000 29249000 33684000 45891000 17430000 28461000 17041000 11818000 5222700 3373 1608 3460 8938;8939;8940;8941;8942;8943;8944 14048;14049;14050;14051;14052;14053;14054;14055;14056;14057;14058 14050 11 ELVVTQLGYDTR AIDTQNKPITSEKIKELVVTQLGYDTRVTI KIKELVVTQLGYDTRVTILGHVQRGGTPSA K E L T R V 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 2 0 1 2 0 0 12 0 1392.7249 Q01813;B1APP6;V9GY25 Q01813 290 301 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0002099 80.763 2 1.2402 1.0686 6.216 2 Median NaN NaN NaN 0 0 Median 1.2402 1.0686 6.216 2 0 Median 9250800 3919100 5331700 0 0 0 9250800 3919100 5331700 3374 1677 3461 8945;8946 14059;14060;14061;14062 14059 4 ELVYPPDYNPEGK EAMNKRLGSLVDEFKELVYPPDYNPEGKVT FKELVYPPDYNPEGKVTKRKHDNEGSGSKR K E L G K V 0 0 1 1 0 0 2 1 0 0 1 1 0 0 3 0 0 0 2 1 0 0 13 0 1519.7195 A0A024R1N4;P12956;B1AHC9;B4DE32;B4E356;Q6IC76 A0A024R1N4 527 539 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 1.5897E-05 99.568 2 2 0.31896 0.31433 33.439 4 Median 0.35835 0.42037 2.4773 2 0 Median 0.28486 0.23577 2.0412 2 0 Median 692970000 506380000 186590000 613760000 441570000 172190000 79205000 64804000 14401000 3375 82 3462 8947;8948;8949;8950 14063;14064;14065;14066;14067;14068;14069;14070;14071;14072 14067 10 ELWFSDDPNVTK SEDPELPYMRPPLSKELWFSDDPNVTKTLR LSKELWFSDDPNVTKTLRFKQWNGKERSIY K E L T K T 0 0 1 2 0 0 1 0 0 0 1 1 0 1 1 1 1 1 0 1 0 0 12 0 1449.6776 O95831;Q5RZA0;Q5RZ99 O95831 178 189 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 0.060775 30.872 1 1.4925 1.2131 NaN 1 Median NaN NaN NaN 0 0 Median 1.4925 1.2131 NaN 1 0 Median 2697900 1645000 1052900 0 0 0 2697900 1645000 1052900 3376 1431 3463 8951 14073 14073 1 ELWTILLGR ______________________________ CVRSSRELWTILLGRSALRELSQIEAELNK R E L G R S 0 1 0 0 0 0 1 1 0 1 3 0 0 0 0 0 1 1 0 0 0 0 9 0 1099.639 Q5SRE5;H7C4K7 Q5SRE5 15 23 NUP188 Nucleoporin NUP188 homolog yes no 2 0.022195 55.531 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3377 1816 3464 8952 14074 14074 1 ELYAGMPTIQITALEK PKSLDIFIKAVHTTKELYAGMPTIQITALE LYAGMPTIQITALEKITKPFFAAISDEKVQ K E L E K I 2 0 0 0 0 1 2 1 0 2 2 1 1 0 1 0 2 0 1 0 0 0 16 0 1776.9332 B2RWN5;Q9H583;A0A024R3R7;A2VDI1;B4E263;B7ZAU8 B2RWN5 1094 1109 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 3.4782E-18 134.56 4 2 1.2772 1.2716 32.602 6 Median 1.313 1.2877 3.1981 4 0 Median 0.87442 0.69274 6.4822 2 0 Median 111370000 46279000 65093000 98758000 39972000 58787000 12613000 6307000 6305900 3378 897 3465 8953;8954;8955;8956;8957;8958 14075;14076;14077;14078;14079;14080;14081;14082;14083;14084;14085;14086 14084 708 12 ELYANVVLGDDSLNDCR YDAEISRKRETRTARELYANVVLGDDSLND YANVVLGDDSLNDCRIIFVDEVFKIERPGE R E L C R I 1 1 2 3 1 0 1 1 0 0 3 0 0 0 0 1 0 0 1 2 0 0 17 0 1951.8946 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 267 283 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.0012681 59.57 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10583000 10583000 0 10583000 10583000 0 0 0 0 3379 406 3466 8959;8960 14087;14088 14088 2 ELYGVGVEK PSGAGKKTRLMCILRELYGVGVEKLRIEHQ LMCILRELYGVGVEKLRIEHQTITTPSKKK R E L E K L 0 0 0 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 992.51786 B4DKE6;Q53HK8;A0A024RDQ8;P40938;Q5U0C2 B4DKE6 58 66 RFC3 Replication factor C subunit 3 yes no 2 0.0048471 68.224 2 1.1731 1.2344 9.6582 2 Median 1.1731 1.2344 9.6582 2 0 Median NaN NaN NaN 0 0 Median 50403000 24944000 25459000 50403000 24944000 25459000 0 0 0 3380 391 3467 8961;8962 14089;14090 14089 2 ELYLEDSPLELK IVDLIHDIQIVSTTRELYLEDSPLELKIQA TTRELYLEDSPLELKIQALDSEGNTFSTLA R E L L K I 0 0 0 1 0 0 3 0 0 0 4 1 0 0 1 1 0 0 1 0 0 0 12 0 1447.7446 Q8TEM1 Q8TEM1 127 138 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 1.8229E-05 104.22 2 0.75288 0.75965 15.396 2 Median 0.75288 0.75965 15.396 2 0 Median NaN NaN NaN 0 0 Median 31292000 18233000 13059000 31292000 18233000 13059000 0 0 0 3381 1937 3468 8963;8964 14091;14092;14093;14094 14092 4 ELYLFDVLR PSPEKAEEESERLLRELYLFDVLRADRTTA SERLLRELYLFDVLRADRTTAAHGLELRVP R E L L R A 0 1 0 1 0 0 1 0 0 0 3 0 0 1 0 0 0 0 1 1 0 0 9 0 1166.6336 B4DY32;P08243 B4DY32 313 321 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2 0.017414 60.91 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3707000 0 3707000 3707000 0 3707000 0 0 0 3382 1051 3469 8965 14095 14095 1 ELYQQLQR LVPAAELLESRVIDRELYQQLQRGERSVRD ESRVIDRELYQQLQRGERSVRDVAEVDTVR R E L Q R G 0 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 1076.5615 Q15149;D3DWL0 Q15149 3132 3139 PLEC;PLEC1 Plectin yes no 2 0.0073227 82.913 1 2 3.8196 3.3684 NaN 1 Median NaN NaN NaN 0 0 Median 3.8196 3.3684 NaN 1 0 Median 26456000 23733000 2722700 23225000 23225000 0 3230500 507730 2722700 3383 1754 3470 8966;8967;8968 14096;14097;14098 14097 3 EMAAMCLGLAHSLSR IRSQMDGLIPGVEPREMAAMCLGLAHSLSR EMAAMCLGLAHSLSRYRLKFSADKVDTMIV R E M S R Y 3 1 0 0 1 0 1 1 1 0 3 0 2 0 0 2 0 0 0 0 0 0 15 0 1645.7739 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 134 148 NOP58 Nucleolar protein 58 yes no 3 2.0826E-06 96.962 2 1.7022 1.7849 6.6458 2 Median 1.7022 1.7849 6.6458 2 0 Median NaN NaN NaN 0 0 Median 48230000 20203000 28027000 48230000 20203000 28027000 0 0 0 3384 2129 3471 8969;8970 14099;14100;14101 14101 1957;1958 3 EMAIPVLEAR QSVRQALHSGQNQLKEMAIPVLEARACAAA QNQLKEMAIPVLEARACAAAGQSGLMALYE K E M A R A 2 1 0 0 0 0 2 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 10 0 1127.6009 P54886 P54886 150 159 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.017484 40.352 1 2.1605 2.2482 NaN 1 Median 2.1605 2.2482 NaN 1 0 Median NaN NaN NaN 0 0 Median 10474000 3036000 7438100 10474000 3036000 7438100 0 0 0 3385 1611 3472 8971 14102 14102 1399 1 EMASCSAVVLEESK FWPTTFSQEVMLRVKEMASCSAVVLEESKC KEMASCSAVVLEESKCLVRSFLKSVLEDVN K E M S K C 2 0 0 0 1 0 3 0 0 0 1 1 1 0 0 3 0 0 0 2 0 0 14 0 1538.6956 A0A0B4J291;Q8N8U2 A0A0B4J291 448 461 CDYL2 Chromodomain Y-like protein 2 yes no 2 4.6727E-05 85.845 2 1.7378 1.8204 2.0621 2 Median 1.7378 1.8204 2.0621 2 0 Median NaN NaN NaN 0 0 Median 31490000 13804000 17687000 31490000 13804000 17687000 0 0 0 3386 503 3473 8972;8973 14103;14104;14105 14105 353 3 EMDLVGLGLHPLFSSR RSRPAPSPESIKRAKEMDLVGLGLHPLFSS MDLVGLGLHPLFSSRFEEEELQRLRLVDSI K E M S R F 0 1 0 1 0 0 1 2 1 0 4 0 1 1 1 2 0 0 0 1 0 0 16 0 1769.9134 Q8TDD1;H0YHH7 Q8TDD1 536 551 DDX54 ATP-dependent RNA helicase DDX54 yes no 3 7.8498E-05 54.768 1 3 1.424 1.2949 23.762 4 Median 1.3636 1.5069 NaN 1 0 Median 1.487 1.2632 23.276 3 0 Median 68200000 31399000 36801000 57075000 26587000 30488000 11125000 4811900 6313400 3387 1933 3474;3475 8974;8975;8976;8977 14106;14107;14108;14109;14110;14111 14106 1768 6 EMDRETLIDVAR KEKALQFLEEVKVSREMDRETLIDVARTSL VSREMDRETLIDVARTSLRTKVHAELADVL R E M A R T 1 2 0 2 0 0 2 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 12 1 1446.7137 Q59ET3;B2R9K8;A0A024RDL1;P40227;A1JUI8;B4DPJ8 Q59ET3 140 151 CCT6A T-complex protein 1 subunit zeta yes no 3 0.011408 40.767 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3388 389 3476 8978 14112 14112 281 1 EMEAELEDERK EQSEEKKKQLVRQVREMEAELEDERKQRSM RQVREMEAELEDERKQRSMAVAARKKLEMD R E M R K Q 1 1 0 1 0 0 5 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 11 1 1377.6082 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1593 1603 MYH9;FLJ00279 Myosin-9 yes no 2;3 2.8165E-05 106.16 2 2 1.7226 2.01 25.043 3 Median 1.7226 2.01 NaN 1 0 Median 2.1994 1.9072 35.156 2 0 Median 64984000 30582000 34402000 58979000 28820000 30159000 6004400 1762000 4242500 3389 81 3477;3478 8979;8980;8981;8982 14113;14114;14115;14116 14116 56 4 EMEENFAVEAANYQDTIGR DALKGTNESLERQMREMEENFAVEAANYQD NFAVEAANYQDTIGRLQDEIQNMKEEMARH R E M G R L 3 1 2 1 0 1 4 1 0 1 0 0 1 1 0 0 1 0 1 1 0 0 19 0 2185.9586 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 V9HWE1 346 364 HEL113;VIM Vimentin yes no 2 5.6818E-40 155.43 2 2 2.5818 2.4801 21.556 4 Median 1.8082 2.0542 3.7182 2 0 Median 3.6128 2.9752 2.8123 2 0 Median 258170000 92389000 165780000 237800000 87405000 150400000 20364000 4984200 15379000 3390 1457 3479;3480 8983;8984;8985;8986 14117;14118;14119;14120;14121;14122;14123;14124;14125;14126 14118 1171 10 EMFDAEYDEGESTYFDDLK ESAKKKHLDKKRKLKEMFDAEYDEGESTYF AEYDEGESTYFDDLKGEMQKQAQLNRAEFE K E M L K G 1 0 0 4 0 0 4 1 0 0 1 1 1 2 0 1 1 0 2 0 0 0 19 0 2302.91 Q14692 Q14692 834 852 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 7.6276E-06 66.533 2 1 1.2733 1.2863 21.097 3 Plateau 1.2637 1.2892 0.31791 2 0 Median 1.1307 0.89463 NaN 1 0 Median 30622000 13667000 16955000 26456000 11702000 14754000 4165800 1965100 2200700 3391 1742 3481 8987;8988;8989 14127;14128;14129;14130;14131 14129 1586 5 EMFEDTVEER ______________________________ ______________________________ K E M E R V 0 1 0 1 0 0 4 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 10 0 1283.534 Q6FHQ0;Q16576;E9PC52;A8K6A2 Q6FHQ0 5 14 RBBP7 Histone-binding protein RBBP7 yes no 2 1.9283E-08 117.89 4 4 1.135 1.1141 17.459 8 Median 1.1648 1.3062 3.2563 4 0 Median 1.1285 0.95894 1.7693 4 0 Median 348280000 168110000 180160000 327950000 158430000 169520000 20328000 9681600 10646000 3392 1771 3482 8990;8991;8992;8993;8994;8995;8996;8997 14132;14133;14134;14135;14136;14137;14138;14139;14140;14141;14142;14143;14144;14145 14138 1642 14 EMFPYEASTPTGISASCR GEKTEERRVERDILKEMFPYEASTPTGISA PYEASTPTGISASCRRPIKGAAGRPLELSD K E M C R R 2 1 0 0 1 0 2 1 0 1 0 0 1 1 2 3 2 0 1 0 0 0 18 0 2002.8765 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;H0YJH7 A0A024RBE7 347 364 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2 2.3794E-05 58.32 1 1.0821 1.0934 NaN 1 Median 1.0821 1.0934 NaN 1 0 Median NaN NaN NaN 0 0 Median 7717500 3767100 3950500 7717500 3767100 3950500 0 0 0 3393 334 3483 8998 14146;14147 14146 254 2 EMGFTNMTEIQHK SLCNLVNENTLKAIKEMGFTNMTEIQHKSI IKEMGFTNMTEIQHKSIRPLLEGRDLLAAA K E M H K S 0 0 1 0 0 1 2 1 1 1 0 1 2 1 0 0 2 0 0 0 0 0 13 0 1564.7014 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 72 84 DDX18 ATP-dependent RNA helicase DDX18 yes no 2;3 2.5765E-06 94.688 3 2.3363 2.3594 7.7308 2 Median 2.3363 2.3594 7.7308 2 0 Median NaN NaN NaN 0 0 Median 93626000 19355000 74271000 93626000 19355000 74271000 0 0 0 3394 303 3484 8999;9000;9001 14148;14149;14150;14151 14151 220;221 4 EMILNPEGDVNSAK DMIRKRLQNFSYDQREMILNPEGDVNSAKV REMILNPEGDVNSAKVCAHITNIPFSITKM R E M A K V 1 0 2 1 0 0 2 1 0 1 1 1 1 0 1 1 0 0 0 1 0 0 14 0 1515.7239 B4DRP9;Q69YJ7;Q9NTZ6;B3KQH4 B4DRP9 329 342 DKFZp667H197;RBM12 RNA-binding protein 12 yes no 2 0.022351 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3395 1027 3485 9002 14152 14152 809 1 EMKPVIFLDVFLPR AWDREKRLSFAVPFREMKPVIFLDVFLPRV REMKPVIFLDVFLPRVTELALTASDRQTKV R E M P R V 0 1 0 1 0 0 1 0 0 1 2 1 1 2 2 0 0 0 0 2 0 0 14 1 1702.948 P78527;B4DL41 P78527 900 913 PRKDC DNA-dependent protein kinase catalytic subunit yes no 3 3.1418E-05 80.96 1 0.85105 0.93711 NaN 1 Median 0.85105 0.93711 NaN 1 0 Median NaN NaN NaN 0 0 Median 6033700 3197200 2836500 6033700 3197200 2836500 0 0 0 3396 1665 3486 9003 14153 14153 1446 1 EMLESAVLPPEDMSQSGPSGSHPQGPR NKRKRPRKKSPRAHREMLESAVLPPEDMSQ MSQSGPSGSHPQGPRGSPTGGAQLLKRKRK R E M P R G 1 1 0 1 0 2 3 3 1 0 2 0 2 0 5 5 0 0 0 1 0 0 27 0 2819.2854 Q14684 Q14684 485 511 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 7.8093E-19 75.539 2 1.219 1.2319 NaN 1 Median 1.219 1.2319 NaN 1 0 Median NaN NaN NaN 0 0 Median 29405000 8234900 21171000 29405000 8234900 21171000 0 0 0 3397 1740 3487 9004;9005 14154;14155;14156;14157;14158 14157 1576;1577 5 EMLGGEIIPR SARILKLPSFELLHKEMLGGEIIPRSILMT ELLHKEMLGGEIIPRSILMTTFESSHYLLC K E M P R S 0 1 0 0 0 0 2 2 0 2 1 0 1 0 1 0 0 0 0 0 0 0 10 0 1113.5852 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 580 589 DDB1 DNA damage-binding protein 1 yes no 2 0.0014802 66.27 2 1 0.91724 1.0478 22.444 3 Plateau 0.90967 1.0246 8.0561 2 0 Median 0.80923 0.7035 NaN 1 0 Median 149720000 77756000 71962000 145430000 75541000 69890000 4287500 2215000 2072500 3398 1770 3488 9006;9007;9008 14159;14160;14161;14162;14163 14161 1635 5 EMLGPVTFIWK RQGSLVLYRVNKYPREMLGPVTFIWKSQRT KYPREMLGPVTFIWKSQRTPGDPSESRQLW R E M W K S 0 0 0 0 0 0 1 1 0 1 1 1 1 1 1 0 1 1 0 1 0 0 11 0 1319.6948 Q96F88;Q99575 Q96F88 303 313 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.0034095 53.327 1 0.30175 0.30292 NaN 1 Median 0.30175 0.30292 NaN 1 0 Median NaN NaN NaN 0 0 Median 7487800 5343200 2144500 7487800 5343200 2144500 0 0 0 3399 1965 3489 9009 14164 14164 1811 1 EMNEFIHK KQMEEEKQQTERVTKEMNEFIHKEQNSLSL QTERVTKEMNEFIHKEQNSLSLLEAREADG K E M H K E 0 0 1 0 0 0 2 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 8 0 1046.4855 Q8TEZ9;Q6PJQ9;Q8TF01 Q8TEZ9 454 461 SFRS18;PNISR Arginine/serine-rich protein PNISR yes no 2 0.027208 41.502 1 1.4641 1.6052 NaN 1 Median 1.4641 1.6052 NaN 1 0 Median NaN NaN NaN 0 0 Median 3170800 1453700 1717000 3170800 1453700 1717000 0 0 0 3400 1857 3490 9010 14165 14165 1717 1 EMNPNYTEFK EIIKVLGTPTREQIREMNPNYTEFKFPQIK REQIREMNPNYTEFKFPQIKAHPWTKVFKS R E M F K F 0 0 2 0 0 0 2 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 10 0 1271.5492 Q68D16;A8MT37;A0A024R0L5;P49840;Q6FI27;B5BUC0;P49841 Q68D16 251 260 DKFZp686D0638;GSK3A;GSK3B Glycogen synthase kinase-3 alpha;Glycogen synthase kinase-3 beta no no 2 0.002123 66.621 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2376200 0 2376200 2376200 0 2376200 0 0 0 3401 51;1078 3491 9011 14166;14167 14167 28 2 EMNWLDYFALGGNK NLYNIEILRLPKALREMNWLDYFALGGNKQ REMNWLDYFALGGNKQALEEAATADLDITE R E M N K Q 1 0 2 1 0 0 1 2 0 0 2 1 1 1 0 0 0 1 1 0 0 0 14 0 1656.7606 Q53HL2;A8K7A2 Q53HL2 67 80 CDCA8 Borealin yes no 2 1.5328E-06 103.34 2 1.0943 1.1987 2.9997 2 Median 1.0943 1.1987 2.9997 2 0 Median NaN NaN NaN 0 0 Median 91965000 42835000 49130000 91965000 42835000 49130000 0 0 0 3402 1789 3492 9012;9013 14168;14169;14170;14171 14169 1653 4 EMQPTHPIR QSQQAYQEAFEISKKEMQPTHPIRLGLALN FEISKKEMQPTHPIRLGLALNFSVFYYEIL K E M I R L 0 1 0 0 0 1 1 0 1 1 0 0 1 0 2 0 1 0 0 0 0 0 9 0 1107.5495 D0PNI1;P63104;B0AZS6;E7EX29;B7Z2E6;H0YB80;Q2F831;P27348;Q53S41;B4DMT8;B4DY04;V9HWD6;P31946;B5BU24 D0PNI1 159 167 YWHAZ;YWHAQ;HEL-S-1;YWHAB 14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed no no 2 0.00087251 80.684 1 2.0897 2.1825 NaN 1 Median 2.0897 2.1825 NaN 1 0 Median NaN NaN NaN 0 0 Median 4850700 1693600 3157000 4850700 1693600 3157000 0 0 0 3403 1182;1523;1536 3493 9014 14172;14173 14172 892 2 EMQQSEAQINTAK EKDVYAVLQLEAEEKEMQQSEAQINTAKRL EKEMQQSEAQINTAKRLLEKGKEAVVQEPE K E M A K R 2 0 1 0 0 3 2 0 0 1 0 1 1 0 0 1 1 0 0 0 0 0 13 0 1476.6879 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 591 603 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.01138 40.616 2 1.337 1.0498 0.51174 2 Median NaN NaN NaN 0 0 Median 1.337 1.0498 0.51174 2 0 Median 7492900 3560400 3932500 0 0 0 7492900 3560400 3932500 3404 899;1099 3494 9015;9016 14174;14175 14175 2 EMSVYEAYR VRKRRVVIVDPETGKEMSVYEAYRKGLIDH DPETGKEMSVYEAYRKGLIDHQTYLELSEQ K E M Y R K 1 1 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 2 1 0 0 9 0 1146.5016 Q15149;D3DWL0;Q96IE3 Q15149 4288 4296 PLEC;PLEC1 Plectin yes no 2 0.0056119 60.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3560900 0 3560900 3560900 0 3560900 0 0 0 3405 1754 3495 9017 14176 14176 1611 1 EMTDATNEEETEIK KHVQLMHGIKDPDLKEMTDATNEEETEIKE KEMTDATNEEETEIKEDTKVPSPKRKLEEP K E M I K E 1 0 1 1 0 0 5 0 0 1 0 1 1 0 0 0 3 0 0 0 0 0 14 0 1638.6931 B4DQV3;B3KXW2;A0A024R283;Q9HCE3;K7EIU3 B4DQV3 166 179 ZNF532 Zinc finger protein 532 yes no 2 0.00027112 75.819 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2847300 2847300 0 2847300 2847300 0 0 0 0 3406 108 3496 9018 14177 14177 94 1 EMVPEFVVPDLTGFK GIGFLTSGWRFVQIKEMVPEFVVPDLTGFK EMVPEFVVPDLTGFKLKPYVSYLAPESEET K E M F K L 0 0 0 1 0 0 2 1 0 0 1 1 1 2 2 0 1 0 0 3 0 0 15 0 1706.8589 Q8IXM3 Q8IXM3 55 69 MRPL41 39S ribosomal protein L41, mitochondrial yes yes 2 0.00010765 72.652 2 1.4727 1.4989 12.855 2 Median 1.4727 1.4989 12.855 2 0 Median NaN NaN NaN 0 0 Median 10963000 5060300 5902600 10963000 5060300 5902600 0 0 0 3407 1894 3497 9019;9020 14178;14179 14178 1738 2 ENAAYFQFFSDVR SWMLQLCCCIEAHLKENAAYFQFFSDVREA LKENAAYFQFFSDVREAEGQLQKLQEALRR K E N V R E 2 1 1 1 0 1 1 0 0 0 0 0 0 3 0 1 0 0 1 1 0 0 13 0 1592.726 Q15149 Q15149 857 869 PLEC Plectin yes yes 2 7.3664E-05 94.767 2 2 2.0829 1.913 40.008 4 Median 1.32 1.3506 8.2382 2 0 Median 3.1157 2.6789 6.6185 2 0 Median 28309000 10918000 17391000 20775000 9232600 11542000 7534600 1685400 5849200 3408 1754 3498 9021;9022;9023;9024 14180;14181;14182;14183;14184;14185 14184 6 ENAEVDGDDDAEEMEAK TDETELARQMERLERENAEVDGDDDAEEME AEVDGDDDAEEMEAKAED____________ R E N A K A 3 0 1 4 0 0 5 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 17 0 1865.7109 Q53XC0;P05198 Q53XC0 296 312 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 1.1977E-07 97.86 2 1.7112 1.7227 14.12 2 Median 1.7112 1.7227 14.12 2 0 Median NaN NaN NaN 0 0 Median 11930000 4021500 7908200 11930000 4021500 7908200 0 0 0 3409 1445 3499 9025;9026 14186;14187;14188 14187 1151 3 ENAGEDPGLAR PGSGNPCHEASAAQKENAGEDPGLARQAPK AAQKENAGEDPGLARQAPKPRKQRSSLLEK K E N A R Q 2 1 1 1 0 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 11 0 1127.5207 P81605 P81605 43 53 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2 0.0070774 62.823 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28562000 28562000 0 28562000 28562000 0 0 0 0 3410 1666 3500 9027;9028 14189;14190 14189 2 ENASPAPGTTAEEAMSR MEVQGAERASPEPQRENASPAPGTTAEEAM ASPAPGTTAEEAMSRGPPPAPEGGSRDEQD R E N S R G 4 1 1 0 0 0 3 1 0 0 0 0 1 0 2 2 2 0 0 0 0 0 17 0 1717.7577 A0A0G2JL47;A0A024RCR6;A0A0G2JK23;P46379;H0Y710 A0A0G2JL47 964 980 BAT3;BAG6 Large proline-rich protein BAG6 yes no 2 2.0572E-09 105.19 2 2.9892 3.0001 43.302 2 Median 2.9892 3.0001 43.302 2 0 Median NaN NaN NaN 0 0 Median 19498000 4788500 14710000 19498000 4788500 14710000 0 0 0 3411 368 3501 9029;9030 14191;14192;14193 14192 275 3 ENCPVPGKPGEAVAAR YFKKASGQPAGPDNKENCPVPGKPGEAVAA NCPVPGKPGEAVAARKLFAPQQILQCSPAN K E N A R K 3 1 1 0 1 0 2 2 0 0 0 1 0 0 3 0 0 0 0 2 0 0 16 1 1650.8148 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3 B5BUF9 204 219 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2;3 0.0010461 60.161 2 2 1.8008 1.7603 67.78 4 Median 3.1395 3.4948 46.727 2 0 Median 1.4083 1.1917 4.9024 2 0 Median 35725000 10533000 25192000 29496000 8049100 21447000 6228300 2484200 3744200 3412 252 3502 9031;9032;9033;9034 14194;14195;14196;14197;14198 14196 5 ENDAHLVEVNLNNIK PPNPTNVEESLKRTKENDAHLVEVNLNNIK ENDAHLVEVNLNNIKNIPIPTLKDFAKALE K E N I K N 1 0 4 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 2 0 0 15 0 1720.8744 Q5HYL6;Q9NYL9;H0YKU1;H0YNJ8 Q5HYL6 195 209 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 3 0.0037053 34.302 1 2.0888 1.6962 NaN 1 Median NaN NaN NaN 0 0 Median 2.0888 1.6962 NaN 1 0 Median 2876700 1060800 1815800 0 0 0 2876700 1060800 1815800 3413 1808 3503 9035 14199 14199 1 ENDAVTIQVLNQLIQK LFIEILNRYIYFYEKENDAVTIQVLNQLIQ NDAVTIQVLNQLIQKIREDLPNLESSEETE K E N Q K I 1 0 2 1 0 3 1 0 0 2 2 1 0 0 0 0 1 0 0 2 0 0 16 0 1824.9945 Q96QK1;Q53FR4 Q96QK1 734 749 VPS35 Vacuolar protein sorting-associated protein 35 yes no 2 1.7297E-24 138.63 2 2.2267 2.2618 NaN 1 Median 2.2267 2.2618 NaN 1 0 Median NaN NaN NaN 0 0 Median 10349000 2346500 8002300 10349000 2346500 8002300 0 0 0 3414 1985 3504 9036;9037 14200;14201 14200 2 ENDPEANIDTIYDR MNIKDEEAIFITLVKENDPEANIDTIYDRF KENDPEANIDTIYDRFVHLDNLPEDGLQCV K E N D R F 1 1 2 3 0 0 2 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 14 0 1663.7326 Q14966;D6W5H1;A8K583;B4E187 Q14966 996 1009 ZNF638 Zinc finger protein 638 yes no 2 9.6448E-05 85.845 3 0.57913 0.56864 NaN 1 Median 0.57913 0.56864 NaN 1 0 Median NaN NaN NaN 0 0 Median 21823000 15931000 5892000 21823000 15931000 5892000 0 0 0 3415 1746 3505 9038;9039;9040 14202;14203;14204;14205 14205 4 ENDPSSVLLFLVGSK ASLEHTKQWLADALKENDPSSVLLFLVGSK ENDPSSVLLFLVGSKKDLSTPAQYALMEKD K E N S K K 0 0 1 1 0 0 1 1 0 0 3 1 0 1 1 3 0 0 0 2 0 0 15 0 1603.8457 C9JY26;Q6NXT3;A0A024QZ68;Q9BZG1;C9JBG0;Q96PJ7;E7ES60 C9JY26 153 167 RAB34 Ras-related protein Rab-34 yes no 2 9.9787E-06 93.011 2 2.6205 2.6915 2.62 2 Median 2.6205 2.6915 2.62 2 0 Median NaN NaN NaN 0 0 Median 20894000 6341700 14553000 20894000 6341700 14553000 0 0 0 3416 13 3506 9041;9042 14206;14207 14207 2 ENEFSFEDNAIK VVTYTGDKDSRAIIRENEFSFEDNAIKGGK IIRENEFSFEDNAIKGGKKAFKMKREAQVK R E N I K G 1 0 2 1 0 0 3 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 12 0 1441.6361 Q12873 Q12873 828 839 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 0.00021727 85.958 2 1.7211 1.376 5.1412 2 Median NaN NaN NaN 0 0 Median 1.7211 1.376 5.1412 2 0 Median 9304400 3122100 6182200 0 0 0 9304400 3122100 6182200 3417 1701 3507 9043;9044 14208;14209;14210;14211 14208 4 ENEFSFEDNAIR VVTYVGDKDSRAIIRENEFSFEDNAIRGGK IIRENEFSFEDNAIRGGKKASRMKKEASVK R E N I R G 1 1 2 1 0 0 3 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 12 0 1469.6423 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;Q659F1;Q659D0 F5GWX5 811 822 CHD4;CHD5;DKFZp434K213;DKFZp434P202 Chromodomain-helicase-DNA-binding protein 4 no no 2 7.7982E-39 187.85 2 2 1.1657 1.1681 36.516 4 Median 0.74048 0.85096 1.1101 2 0 Median 1.8519 1.6015 0.93741 2 0 Median 414580000 214320000 200260000 330460000 184350000 146110000 84116000 29971000 54145000 3418 515 3508 9045;9046;9047;9048 14212;14213;14214;14215;14216;14217;14218;14219 14215 8 ENELQAGPWNTGR PTVQPWIAPPMPRAKENELQAGPWNTGRSL AKENELQAGPWNTGRSLEHRPRGNTASLIA K E N G R S 1 1 2 0 0 1 2 2 0 0 1 0 0 0 1 0 1 1 0 0 0 0 13 0 1470.6852 O60566 O60566 305 317 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.0082577 55.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3419 1396 3509 9049 14220 14220 1 ENEQSLLEYLEK AGFDSDYDQALADIRENEQSLLEYLEKQRN DIRENEQSLLEYLEKQRNRIGCRTIVYWGI R E N E K Q 0 0 1 0 0 1 4 0 0 0 3 1 0 0 0 1 0 0 1 0 0 0 12 0 1493.725 P52701;A0A087WWJ1;Q1L838 P52701 946 957 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.00021114 81.017 1 1.0558 1.1064 NaN 1 Median 1.0558 1.1064 NaN 1 0 Median NaN NaN NaN 0 0 Median 10787000 4766900 6020200 10787000 4766900 6020200 0 0 0 3420 1601 3510 9050 14221;14222;14223 14222 3 ENETLIQR KFVPSDEKKKQGCQRENETLIQRRKDQMQP KKQGCQRENETLIQRRKDQMQPGGTAISVT R E N Q R R 0 1 1 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 1001.5142 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9 Q6P1J9 400 407 CDC73 Parafibromin yes no 2 0.0011918 111.29 2 1 1.5774 1.7026 1.9108 2 Median 1.5774 1.7026 1.9108 2 0 Median NaN NaN NaN 0 0 Median 77604000 29447000 48157000 77604000 29447000 48157000 0 0 0 3421 1851 3511 9051;9052;9053 14224;14225;14226;14227 14226 4 ENEVEEVKEEGPK PEGEEHHPVADTENKENEVEEVKEEGPKEM NKENEVEEVKEEGPKEMTLDEWKAIQNKDR K E N P K E 0 0 1 0 0 0 6 1 0 0 0 2 0 0 1 0 0 0 0 2 0 0 13 1 1514.71 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 253 265 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 3 0.0042673 43.03 1 1.7674 1.5774 NaN 1 Median NaN NaN NaN 0 0 Median 1.7674 1.5774 NaN 1 0 Median 2005500 779560 1226000 0 0 0 2005500 779560 1226000 3422 1832 3512 9054 14228 14228 1 ENEVSTSATDELLSQFK QEMDIDEILRLAETRENEVSTSATDELLSQ EVSTSATDELLSQFKVANFATMEDEEELEE R E N F K V 1 0 1 1 0 1 3 0 0 0 2 1 0 1 0 3 2 0 0 1 0 0 17 0 1896.8953 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 1006 1022 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.006238 50.675 2 0.77672 0.78824 12.513 2 Median 0.77672 0.78824 12.513 2 0 Median NaN NaN NaN 0 0 Median 35885000 19800000 16085000 35885000 19800000 16085000 0 0 0 3423 354 3513 9055;9056 14229;14230 14229 1 ENFAGEATLQR QGTSKIDDIWNLEVKENFAGEATLQRIYSL LEVKENFAGEATLQRIYSLWEHSTKNHLQL K E N Q R I 2 1 1 0 0 1 2 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 11 0 1234.5942 E1A689;C0JYY2;P04114;E1B4S8;E1B4S7;Q59HB3 E1A689 3548 3558 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes no 2 0.011061 57.785 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1362700 1362700 0 0 0 0 1362700 1362700 0 3424 1123 3514 9057 14231 14231 1 ENFALECSPAFQVSDDEHEK LVPLSVSSGKNVIIKENFALECSPAFQVSD ECSPAFQVSDDEHEKMNKMKFKVNRRTQKS K E N E K M 2 0 1 2 1 1 4 0 1 0 1 1 0 2 1 2 0 0 0 1 0 0 20 0 2351.0012 Q562F6;B7Z7S9 Q562F6 1174 1193 SGOL2 Shugoshin-like 2 yes no 3 0.0023168 24.548 2 2.0845 1.6446 4.8589 2 Median NaN NaN NaN 0 0 Median 2.0845 1.6446 4.8589 2 0 Median 8251400 2553900 5697500 0 0 0 8251400 2553900 5697500 3425 1795 3515 9058;9059 14232;14233;14234 14233 3 ENGAFTVLVDNYVK GKKYRPLFDYFLKCKENGAFTVLVDNYVKE KENGAFTVLVDNYVKEEEGTGVVHQAPYFG K E N V K E 1 0 2 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 3 0 0 14 0 1567.7882 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q6P0M4;Q5TCD1 Q59G75 318 331 IARS;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.00011593 91.961 2 1 1.4539 1.4576 53.625 3 Median 1.6119 1.6497 17.514 2 0 Median 0.82444 0.66825 NaN 1 0 Median 28733000 11028000 17705000 25982000 9544800 16437000 2751500 1483700 1267900 3426 1561 3516 9060;9061;9062 14235;14236;14237;14238;14239;14240 14236 6 ENGFSSPPQIKDEPEDDGYFVPPK EKVRASGDAKIKKEKENGFSSPPQIKDEPE IKDEPEDDGYFVPPKEDIKPLKRPRDEDDA K E N P K E 0 0 1 3 0 1 3 2 0 1 0 2 0 2 5 2 0 0 1 1 0 0 24 1 2691.234 P11387;B9EG90;Q6PK95;Q6NWZ5 P11387 107 130 TOP1 DNA topoisomerase 1 yes no 3 0.059585 11.966 1 0.77255 0.66555 NaN 1 Median NaN NaN NaN 0 0 Median 0.77255 0.66555 NaN 1 0 Median 5825300 2527500 3297800 0 0 0 5825300 2527500 3297800 3427 1470 3517 9063 14241 14241 1 ENGITQALR LLKHGWTQGKGLGRKENGITQALRVTLKQD KGLGRKENGITQALRVTLKQDTHGVGHDPA K E N L R V 1 1 1 0 0 1 1 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1000.5302 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 34 42 GPATCH4 G patch domain-containing protein 4 yes no 2 0.0011834 88.819 1 1 1.4422 1.3441 3.2051 2 Median 1.2741 1.314 NaN 1 0 Median 1.6325 1.3749 NaN 1 0 Median 41501000 18622000 22878000 36885000 16051000 20834000 4616100 2571400 2044700 3428 1820 3518 9064;9065 14242;14243;14244 14243 3 ENGTGNMDEDLLVK VLSTCEHRLSNIVLKENGTGNMDEDLLVKY KENGTGNMDEDLLVKYIFTLGDIAQLCPAR K E N V K Y 0 0 2 2 0 0 2 2 0 0 2 1 1 0 0 0 1 0 0 1 0 0 14 0 1533.6981 P42695;G3V1A9 P42695 842 855 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.00087077 68.44 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3429 1565 3519 9066;9067;9068;9069;9070 14245;14246;14247;14248;14249 14247 1319 5 ENGVYLIDVK TEIDQDKYAVRFIPRENGVYLIDVKFNGTH RFIPRENGVYLIDVKFNGTHIPGSPFKIRV R E N V K F 0 0 1 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 1 2 0 0 10 0 1148.6077 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5 P21333 2396 2405 FLNA;FLJ00119 Filamin-A yes no 2 0.024874 44.863 1 1.2754 1.2758 NaN 1 Median 1.2754 1.2758 NaN 1 0 Median NaN NaN NaN 0 0 Median 14027000 6537600 7489900 14027000 6537600 7489900 0 0 0 3430 1504 3520 9071 14250 14250 1 ENILEEFSK NNRLFVGSIPKNKTKENILEEFSKVTEGLV PKNKTKENILEEFSKVTEGLVDVILYHQPD K E N S K V 0 0 1 0 0 0 3 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1107.5448 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5;B4DT28;B4DMD1 B2R7W4 260 268 HNRNPR;HNRPR;DKFZp686A13234 Heterogeneous nuclear ribonucleoprotein R yes no 2 0.00033612 101.65 2 1.4089 1.4234 6.0279 2 Median 1.4089 1.4234 6.0279 2 0 Median NaN NaN NaN 0 0 Median 46659000 20143000 26516000 46659000 20143000 26516000 0 0 0 3431 855 3521 9072;9073 14251;14252;14253;14254;14255;14256 14255 6 ENILHVSENVIFTDVNSILR EHVKDDVSISVEEGKENILHVSENVIFTDV VSENVIFTDVNSILRYLARVATTAGLYGSN K E N L R Y 0 1 3 1 0 0 2 0 1 3 2 0 0 1 0 2 1 0 0 3 0 0 20 0 2311.2172 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5;V9GZ76 P07814 37 56 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 0.022773 18.509 1 1.1236 1.2303 NaN 1 Median 1.1236 1.2303 NaN 1 0 Median NaN NaN NaN 0 0 Median 32529000 9897700 22631000 32529000 9897700 22631000 0 0 0 3432 1454 3522 9074 14257 14257 1 ENINDEPVDMSAR LRPHGDNRTAGRPGKENINDEPVDMSARRS GKENINDEPVDMSARRSEPERGRLTPSPDI K E N A R R 1 1 2 2 0 0 2 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 13 0 1488.6515 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 98 110 GATAD2B Transcriptional repressor p66-beta yes no 2 8.8743E-07 110.39 2 0.88553 0.9013 7.8664 2 Median 0.88553 0.9013 7.8664 2 0 Median NaN NaN NaN 0 0 Median 24651000 13235000 11415000 24651000 13235000 11415000 0 0 0 3433 591 3523 9075;9076 14258;14259;14260 14260 447 3 ENIQTTNYNTALDFHSNSDVTK NSEEWFAAACKKELKENIQTTNYNTALDFH YNTALDFHSNSDVTKQVIQTHVNAGEAPDP K E N T K Q 1 0 4 2 0 1 1 0 1 1 1 1 0 1 0 2 4 0 1 1 0 0 22 0 2511.1514 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1535 1556 CASC5 Protein CASC5 yes no 3 1.6909E-08 67.864 1 2 1.1449 0.95107 1.935 3 Median 0.97023 0.95107 NaN 1 0 Median 1.1765 0.95024 2.7355 2 0 Median 36510000 18939000 17571000 20820000 11885000 8934700 15690000 7053700 8636400 3434 1928 3524 9077;9078;9079 14261;14262;14263;14264;14265;14266 14262 6 ENISNAQALLEYHLSYLQEVEQLR PREEGMVPFIFVGTRENISNAQALLEYHLS LEYHLSYLQEVEQLRLERLQIDEQLRQIGL R E N L R L 2 1 2 0 0 3 4 0 1 1 5 0 0 0 0 2 0 0 2 1 0 0 24 0 2859.4403 P51116 P51116 352 375 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 2.5293E-56 159.73 2 1 1.2613 1.1232 14.025 3 Plateau 1.2019 1.2131 10.893 2 0 Median 1.2031 0.99025 NaN 1 0 Median 51212000 22944000 28268000 33207000 14269000 18938000 18005000 8675400 9329800 3435 1593 3525 9080;9081;9082 14267;14268;14269;14270;14271;14272 14271 6 ENIVEAIIHSPELIR ISPYTIPEEDRHCIRENIVEAIIHSPELIR ENIVEAIIHSPELIRVQLTTCIHHIIKHDY R E N I R V 1 1 1 0 0 0 3 0 1 4 1 0 0 0 1 1 0 0 0 1 0 0 15 0 1731.9519 O95373;E9PLB2 O95373 93 107 IPO7 Importin-7 yes no 2 1.0184E-05 92.856 2 1 2.0033 2.0114 55.576 3 Plateau 1.981 1.9972 0.99948 2 0 Median 0.91939 0.76279 NaN 1 0 Median 24219000 8577800 15641000 18863000 5856300 13007000 5355300 2721500 2633800 3436 1424 3526 9083;9084;9085 14273;14274;14275;14276;14277;14278;14279 14273 7 ENLAESSKPTAGGSR LAAQKLALSPLSLGKENLAESSKPTAGGSR ENLAESSKPTAGGSRSQKVKVAQRSPVDSG K E N S R S 2 1 1 0 0 0 2 2 0 0 1 1 0 0 1 3 1 0 0 0 0 0 15 1 1502.7325 P49454 P49454 3126 3140 CENPF Centromere protein F yes yes 2;3 1.8571E-06 105.65 3 1.1088 1.2266 11.935 3 Median 1.1088 1.2266 11.935 3 0 Median NaN NaN NaN 0 0 Median 19264000 10166000 9097300 19264000 10166000 9097300 0 0 0 3437 1581 3527 9086;9087;9088 14280;14281;14282;14283 14280 4 ENLAIESQSK SKKTGPLSAQPSVEKENLAIESQSKTQKKG PSVEKENLAIESQSKTQKKGKISHDKRKKS K E N S K T 1 0 1 0 0 1 2 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 10 0 1117.5615 Q71F23;A8K8D2;Q09GN1;A5D8X7 Q71F23 198 207 CENPU;MLF1IP Centromere protein U yes no 2 3.6338E-05 90.15 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4990000 4990000 0 4990000 4990000 0 0 0 0 3438 1866 3528 9089;9090;9091 14284;14285;14286 14284 3 ENLELNGSILSGGYPGSAPLQR SGKKTPRTGRHGANKENLELNGSILSGGYP SILSGGYPGSAPLQRNFSINSVASTYSEFA K E N Q R N 1 1 2 0 0 1 2 4 0 1 4 0 0 0 2 3 0 0 1 0 0 0 22 0 2271.1495 A0A024RC67;O43663;G3V3N7 A0A024RC67 547 568 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.0079574 24.053 2 1.1404 0.97239 0.2769 2 Median NaN NaN NaN 0 0 Median 1.1404 0.97239 0.2769 2 0 Median 8738600 4282000 4456500 0 0 0 8738600 4282000 4456500 3439 353 3529 9092;9093 14287;14288 14287 2 ENLESWLNYLK KKLVLILNKSDLVPKENLESWLNYLKKELP LVPKENLESWLNYLKKELPTVVFRASTKPK K E N L K K 0 0 2 0 0 0 2 0 0 0 3 1 0 0 0 1 0 1 1 0 0 0 11 0 1407.7034 A0A024R2Z6;Q9BVP2 A0A024R2Z6 174 184 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 1.4269E-05 107.15 2 1 1.148 0.96139 16.958 3 Plateau 0.70778 0.73082 2.3226 2 0 Median 1.1851 0.97896 NaN 1 0 Median 60620000 31570000 29050000 29079000 16299000 12781000 31541000 15271000 16270000 3440 125 3530 9094;9095;9096 14289;14290;14291;14292;14293;14294 14289 6 ENLISALEEAK VVTHGGRVLAVTAIRENLISALEEAKKGLA TAIRENLISALEEAKKGLAAIKFEGAIYRK R E N A K K 2 0 1 0 0 0 3 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1215.6347 Q3B7A7;Q59HH3;P22102;Q15374 Q3B7A7 394 404 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.00024247 90.964 2 1.7152 1.8626 NaN 1 Median 1.7152 1.8626 NaN 1 0 Median NaN NaN NaN 0 0 Median 78840000 18065000 60775000 78840000 18065000 60775000 0 0 0 3441 1507 3531 9097;9098 14295;14296 14295 2 ENLLEEQGSIALR AAYVKKLDPAQSASRENLLEEQGSIALRQE SRENLLEEQGSIALRQEQIDNQYHSLLELG R E N L R Q 1 1 1 0 0 1 3 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 13 0 1470.7678 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16;B4DGT1;B4DTV8 A0A0D9SF54 1033 1045 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0026901 68.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11438000 11438000 0 11438000 11438000 0 0 0 0 3442 523 3532 9099 14297 14297 1 ENLLGSIK QNNLIEYHCMVNFIKENLLGSIKEFRNRFI CMVNFIKENLLGSIKEFRNRFINPIQNGQC K E N I K E 0 0 1 0 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 872.49673 A4LAA3;P46100;B4DHH8;H0Y3T0;Q5JX93 A4LAA3 1767 1774 ATRX Transcriptional regulator ATRX yes no 2 0.013467 65.246 1 0.61904 0.61407 NaN 1 Median 0.61904 0.61407 NaN 1 0 Median NaN NaN NaN 0 0 Median 19179000 11858000 7320900 19179000 11858000 7320900 0 0 0 3443 672 3533 9100 14298;14299 14298 2 ENLPQDYAR YRGLKSFRTSPWDPKENLPQDYARIFQFQN SPWDPKENLPQDYARIFQFQNFTNTRKSIF K E N A R I 1 1 1 1 0 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 9 0 1104.52 Q2NL82 Q2NL82 518 526 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 0.0019674 78.516 1 1.1841 1.2277 NaN 1 Median 1.1841 1.2277 NaN 1 0 Median NaN NaN NaN 0 0 Median 22785000 9707400 13078000 22785000 9707400 13078000 0 0 0 3444 1776 3534 9101 14300 14300 1 ENLTDLVVDTDTLGESTQPQR GPPVAQVEQDLPISRENLTDLVVDTDTLGE VVDTDTLGESTQPQREGAQVPTGREREQHV R E N Q R E 0 1 1 3 0 2 2 1 0 0 3 0 0 0 1 1 4 0 0 2 0 0 21 0 2330.1238 Q14676;B4DYH4 Q14676 643 663 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0077085 38.511 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6048300 6048300 0 6048300 6048300 0 0 0 0 3445 1738 3535 9102 14301 14301 1 ENLTELSGGQR LDGLEFKVALGNTWKENLTELSGGQRSLVA NTWKENLTELSGGQRSLVALSLILSMLLFK K E N Q R S 0 1 1 0 0 1 2 2 0 0 2 0 0 0 0 1 1 0 0 0 0 0 11 0 1202.5891 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5;Q13497 A0A024R158 1080 1090 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 8.8665E-13 146.68 2 2 1.1407 1.1552 21.873 4 Median 0.80377 0.94797 3.772 2 0 Median 1.5912 1.3818 1.1448 2 0 Median 1479800000 781560000 698230000 1278300000 704220000 574050000 201520000 77340000 124180000 3446 69 3536 9103;9104;9105;9106 14302;14303;14304;14305;14306;14307;14308;14309;14310 14305 9 ENLWLNLTDGSILCGR RIPPCGWKCSKCDMRENLWLNLTDGSILCG NLWLNLTDGSILCGRRYFDGSGGNNHAVEH R E N G R R 0 1 2 1 1 0 1 2 0 1 4 0 0 0 0 1 1 1 0 0 0 0 16 0 1859.92 A0A140VJZ1;P45974 A0A140VJZ1 206 221 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 1.9278E-08 94.122 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9030800 0 9030800 9030800 0 9030800 0 0 0 3447 613 3537 9107;9108 14311;14312;14313 14313 3 ENMEAISPLK GPTYYIDTNALRVPRENMEAISPLKNGTVE LRVPRENMEAISPLKNGTVEDWDSFQAILD R E N L K N 1 0 1 0 0 0 2 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 10 0 1130.5642 Q6FI97;Q53FS0;O96019;H7C5S0;C9JQT2 Q6FI97 80 89 BAF53A;ACTL6A Actin-like protein 6A yes no 2 0.0013828 72.643 1 2 1.2712 0.99997 NaN 1 Median NaN NaN NaN 0 0 Median 1.2712 0.99997 NaN 1 0 Median 36365000 2981300 33384000 31522000 0 31522000 4842900 2981300 1861600 3448 1434 3538 9109;9110;9111 14314;14315;14316 14314 1128 3 ENMNLSEAQVQALALSR VRIQPLEDIISAVWKENMNLSEAQVQALAL MNLSEAQVQALALSRQASQELDVKRREAIY K E N S R Q 3 1 2 0 0 2 2 0 0 0 3 0 1 0 0 2 0 0 0 1 0 0 17 0 1872.9364 A4LAA3;P46100;B4DHH8;B4DLE1;B4DLW1 A4LAA3 2360 2376 ATRX Transcriptional regulator ATRX yes no 2 5.6047E-19 124.42 3 0.92755 0.9155 NaN 1 Median 0.92755 0.9155 NaN 1 0 Median NaN NaN NaN 0 0 Median 21289000 13839000 7449800 21289000 13839000 7449800 0 0 0 3449 672 3539 9112;9113;9114 14317;14318;14319;14320;14321;14322 14318 521 6 ENMTLQPK VNALIENPTFDSQTKENMTLQPKSFGSTCQ TFDSQTKENMTLQPKSFGSTCQLSEKFIKA K E N P K S 0 0 1 0 0 1 1 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 8 0 959.47462 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 379 386 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.0041951 91.9 1 4 1.4947 1.2063 48.219 4 Median 0.46442 0.47167 NaN 1 0 Median 1.5563 1.2707 6.2415 3 0 Plateau 90033000 36625000 53409000 13652000 8127900 5524500 76381000 28497000 47884000 3450 1471;1679 3540;3541 9115;9116;9117;9118;9119 14323;14324;14325;14326;14327;14328;14329;14330;14331 14329 1193 9 ENNQNVYGLDDSEHISSIVDVPPR QPLSTQDNSEVLFLKENNQNVYGLDDSEHI DDSEHISSIVDVPPRESHSHSDQSSKTSLM K E N P R E 0 1 3 3 0 1 2 1 1 2 1 0 0 0 2 3 0 0 1 3 0 0 24 0 2696.2678 Q562F6;B7Z7S9 Q562F6 211 234 SGOL2 Shugoshin-like 2 yes no 3 0.039359 12.08 1 2.1457 1.835 NaN 1 Median NaN NaN NaN 0 0 Median 2.1457 1.835 NaN 1 0 Median 3272200 982300 2289900 0 0 0 3272200 982300 2289900 3451 1795 3542 9120 14332 14332 1 ENNYLNQHVNR YEPHKGKLKPWGQSKENNYLNQHVNRINFY GQSKENNYLNQHVNRINFYKKTYKQPHLQT K E N N R I 0 1 4 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 1 1 0 0 11 0 1399.6593 Q9BXS6;A8K4B4 Q9BXS6 385 395 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2;3 9.8884E-13 146.23 2 4 0.54904 0.46734 8.4636 5 Median 0.39858 0.40196 NaN 1 0 Median 0.54938 0.47002 7.0603 4 0 Median 23663000 16610000 7052400 10341000 8020600 2320200 13322000 8589700 4732200 3452 2014 3543 9121;9122;9123;9124;9125;9126 14333;14334;14335;14336;14337;14338;14339;14340 14335 8 ENPGFDFSGAEISGNYTK QDQMQRKLTLERFQKENPGFDFSGAEISGN GFDFSGAEISGNYTKGGPDFSNLEK_____ K E N T K G 1 0 2 1 0 0 2 3 0 1 0 1 0 2 1 2 1 0 1 0 0 0 18 0 1931.8537 E5RFP0;Q8WVJ2 E5RFP0 105 122 NUDCD2 NudC domain-containing protein 2 yes no 2 0.00025257 63.185 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3453 1211 3544 9127 14341 14341 1 ENPLLPEEEEQR EFENRTRNVDVYDKRENPLLPEEEEQRAIA DKRENPLLPEEEEQRAIAKIKMLGNIKFIG R E N Q R A 0 1 1 0 0 1 5 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 12 0 1481.6998 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77 D3DQV9 189 200 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.00022704 90.827 3 2 1.8637 1.5682 9.3791 2 Median NaN NaN NaN 0 0 Median 1.8637 1.5682 9.3791 2 0 Median 14204000 2188000 12016000 7596900 0 7596900 6606700 2188000 4418700 3454 1054 3545 9128;9129;9130;9131;9132 14342;14343;14344;14345;14346 14344 5 ENPLPQGSVDYNNQK MQSRSGKGPSFAEAKENPLPQGSVDYNNQK ENPLPQGSVDYNNQKRGKRESQTSIPDYFY K E N Q K R 0 0 3 1 0 2 1 1 0 0 1 1 0 0 2 1 0 0 1 1 0 0 15 0 1701.7958 A0A024QZE0;Q9H7E2 A0A024QZE0 425 439 TDRD3 Tudor domain-containing protein 3 yes no 2 0.001252 66.262 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2176600 0 2176600 2176600 0 2176600 0 0 0 3455 18 3546 9133 14347 14347 1 ENPSATLEDLEK QITAQQINKLEELWKENPSATLEDLEKPGV LWKENPSATLEDLEKPGVDEEPQHVLLRYE K E N E K P 1 0 1 1 0 0 3 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 12 0 1344.6409 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 271 282 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.0063447 62.166 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3456 231 3547 9134;9135 14348;14349 14348 2 ENPSATLEDLEKPGVDEEPQHVLLR QITAQQINKLEELWKENPSATLEDLEKPGV EKPGVDEEPQHVLLRYEDAYQYQNIFGPLV K E N L R Y 1 1 1 2 0 1 5 1 1 0 4 1 0 0 3 1 1 0 0 2 0 0 25 1 2814.4036 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 271 295 UPF1 Regulator of nonsense transcripts 1 yes no 3 0.0014008 26.157 2 0.93789 0.78432 7.4447 2 Median NaN NaN NaN 0 0 Median 0.93789 0.78432 7.4447 2 0 Median 12826000 4984300 7841500 0 0 0 12826000 4984300 7841500 3457 231 3548 9136;9137 14350;14351;14352 14352 3 ENQCVIISGESGAGK YALADNMYRNMIIDRENQCVIISGESGAGK ENQCVIISGESGAGKTVAAKYIMSYISRVS R E N G K T 1 0 1 0 1 1 2 3 0 2 0 1 0 0 0 2 0 0 0 1 0 0 15 0 1547.725 Q4KMR3;Q12965 Q4KMR3 104 118 MYO1E Unconventional myosin-Ie yes no 2 0.00021155 75.739 1 0.88825 0.87553 NaN 1 Median 0.88825 0.87553 NaN 1 0 Median NaN NaN NaN 0 0 Median 8542500 4599000 3943500 8542500 4599000 3943500 0 0 0 3458 1703 3549 9138 14353;14354 14354 2 ENQELNAHNQELNNR QALEAERQALRQCQRENQELNAHNQELNNR ENQELNAHNQELNNRLAAEITRLRTLLTGD R E N N R L 1 1 5 0 0 2 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 15 0 1821.8354 J3KSW8;U6FSN9;Q6WCQ1;B9EGI2;H0Y2S9;Q5ZEZ6;H0Y7E2;Q9Y6X7 J3KSW8 660 674 MPRIP;Mprip-Ntrk1 fusion gene;M-RIP;KIAA0864 Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2;3 0.0043757 53.967 1 1 4.889 4.2335 NaN 1 Median NaN NaN NaN 0 0 Median 4.889 4.2335 NaN 1 0 Median 1210900 171200 1039700 0 0 0 1210900 171200 1039700 3459 1330 3550 9139;9140 14355;14356 14355 2 ENQTAVDVFR LAESWNAAFLESSAKENQTAVDVFRRIILE ESSAKENQTAVDVFRRIILEAEKMDGAASQ K E N F R R 1 1 1 1 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 10 0 1177.5728 C9J931;Q6NZ61;A8K005;A0A090N900;Q15382 C9J931 47 56 RHEB GTP-binding protein Rheb yes no 2 6.3276E-05 96.331 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27884000 0 27884000 27884000 0 27884000 0 0 0 3460 459 3551 9141;9142 14357;14358 14358 2 ENQVLSVR HKLQDASAEVERLRRENQVLSVRIADKKYY EVERLRRENQVLSVRIADKKYYPSSQDSSS R E N V R I 0 1 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 943.50869 A0A024R7H5;B4E0Z6;Q10589 A0A024R7H5 140 147 BST2 Bone marrow stromal antigen 2 yes no 2 0.0048425 89.752 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10041000 0 10041000 10041000 0 10041000 0 0 0 3461 225 3552 9143 14359 14359 1 ENQWFDVGVIK KPDLPPPPSKAPMKKENQWFDVGVIKGTNV PMKKENQWFDVGVIKGTNVMVTHYFLPPDD K E N I K G 0 0 1 1 0 1 1 1 0 1 0 1 0 1 0 0 0 1 0 2 0 0 11 0 1333.6667 A6NEM2;P51610;H7C1C4 A6NEM2 1854 1864 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.012898 55.461 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3871700 3871700 0 3871700 3871700 0 0 0 0 3462 680 3553 9144 14360 14360 1 ENSERPPVCLR DDLTAQEMSECNSNKENSERPPVCLRTKRH NSNKENSERPPVCLRTKRHKNNRVKKKNEA K E N L R T 0 2 1 0 1 0 2 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 11 1 1355.6616 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9 A0A024R4W4 78 88 BRD1 Bromodomain-containing protein 1 yes no 3 0.037013 30.55 1 1.7451 1.5769 NaN 1 Median NaN NaN NaN 0 0 Median 1.7451 1.5769 NaN 1 0 Median 2930400 962140 1968200 0 0 0 2930400 962140 1968200 3463 162 3554 9145 14361 14361 1 ENSETVVTGSLDDLVK HDDAIWSVAWGTNKKENSETVVTGSLDDLV NSETVVTGSLDDLVKVWKWRDERLDLQWSL K E N V K V 0 0 1 2 0 0 2 1 0 0 2 1 0 0 0 2 2 0 0 3 0 0 16 0 1704.8418 H0YN81;Q9GZS3;H0YMF9;H0YM76;B4E387 H0YN81 30 45 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 5.2983E-12 114.7 2 1 1.5506 1.7464 21.124 3 Plateau 1.5637 1.7423 0.33488 2 0 Median 1.4637 1.2085 NaN 1 0 Median 125730000 45537000 80194000 114340000 41222000 73120000 11389000 4315000 7074500 3464 1299 3555 9146;9147;9148 14362;14363;14364;14365 14364 4 ENSTHFSQPNSTK VGPNAPEEKKHLDIKENSTHFSQPNSTKVQ IKENSTHFSQPNSTKVQRVLVASSVVAGES K E N T K V 0 0 2 0 0 1 1 0 1 0 0 1 0 1 1 3 2 0 0 0 0 0 13 0 1475.6641 X5DQX7;Q06787;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WPL0;A0A087WXI3;B4DFH8;B4DZ17 X5DQX7 360 372 FMR1 Fragile X mental retardation protein 1 yes no 2;3 5.9456E-142 266.97 3 1.2788 1.2537 6.5175 3 Plateau 1.2788 1.2537 6.5175 3 0 Plateau NaN NaN NaN 0 0 Median 48521000 21135000 27386000 48521000 21135000 27386000 0 0 0 3465 1689 3556 9149;9150;9151 14366;14367;14368;14369;14370 14366 5 ENSYPWPYGR ______________________________ ______________________________ K E N G R Q 0 1 1 0 0 0 1 1 0 0 0 0 0 0 2 1 0 1 2 0 0 0 10 0 1267.5622 B2RC06;Q96GD4;J3KTD6;J3KRF8 Q96GD4 5 14 AURKB Aurora kinase B no no 2 0.0022483 69.954 2 1 0.93834 0.97598 0.33657 2 Median 0.93834 0.97598 0.33657 2 0 Median NaN NaN NaN 0 0 Median 59732000 27229000 32504000 52599000 27229000 25370000 7133500 0 7133500 3466 881;1967 3557 9152;9153;9154 14371;14372;14373;14374;14375 14373 5 ENTDSVVMQPK LDRFVYRNPKPHKGKENTDSVVMQPKRKHF HKGKENTDSVVMQPKRKHFIKDIRHLPVNS K E N P K R 0 0 1 1 0 1 1 0 0 0 0 1 1 0 1 1 1 0 0 2 0 0 11 0 1246.5864 B2R5U7;Q03701 B2R5U7 771 781 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 1.3796E-06 111.61 2 1.1707 1.187 1.2638 2 Median 1.1707 1.187 1.2638 2 0 Median NaN NaN NaN 0 0 Median 26974000 11497000 15477000 26974000 11497000 15477000 0 0 0 3467 836;1683 3558 9155;9156 14376;14377;14378 14376 662 3 ENTEGEYSGIEHVIVDGVVQSIK GYKTPYTDVNIVTIRENTEGEYSGIEHVIV GIEHVIVDGVVQSIKLITEGASKRIAEFAF R E N I K L 0 0 1 1 0 1 4 3 1 3 0 1 0 0 0 2 1 0 1 4 0 0 23 0 2501.2286 H0YMU3;B4DJB4;H0YL72;B4DSY4;Q53GF8;P50213;H0YLI6;B7Z9J8 H0YMU3 119 141 IDH3A Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 3 0.047947 22.044 1 1 1.1962 0.94901 NaN 1 Median NaN NaN NaN 0 0 Median 1.1962 0.94901 NaN 1 0 Median 13039000 9716100 3323000 6591700 6591700 0 6447500 3124400 3323000 3468 987 3559 9157;9158 14379;14380 14379 2 ENTEGEYSSLEHESVAGVVESLK GVVTRHKDIDILIVRENTEGEYSSLEHESV SLEHESVAGVVESLKIITKAKSLRIAEYAF R E N L K I 1 0 1 0 0 0 6 2 1 0 2 1 0 0 0 4 1 0 1 3 0 0 23 0 2492.1555 H7C1W2;E9PF84;O15384;G5E9Q7;D3DWV9;E7EQB8;P51553 H7C1W2 108 130 IDH3G;hCG_2004980 Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial yes no 3 1.9085E-08 58.92 1 1 0.9527 0.85729 56.806 2 Median 1.2464 1.2811 NaN 1 0 Median 0.72817 0.5737 NaN 1 0 Median 23543000 10257000 13287000 17898000 7379000 10519000 5644900 2877600 2767300 3469 1199 3560 9159;9160 14381;14382 14381 1 ENTFTIENESVK STSLETQDDDNIRLKENTFTIENESVKIAF RLKENTFTIENESVKIAFAVTLETVLAGHE K E N V K I 0 0 2 0 0 0 3 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 12 0 1409.6674 Q6IA86 Q6IA86 257 268 ELP2 Elongator complex protein 2 yes yes 2 0.0004017 71.524 1 1.4271 1.4293 NaN 1 Median 1.4271 1.4293 NaN 1 0 Median NaN NaN NaN 0 0 Median 13922000 5777800 8144000 13922000 5777800 8144000 0 0 0 3470 1842 3561 9161 14383 14383 1 ENVAFEQEK KVKEEKAYKALKMMKENVAFEQEKEGKSNE ALKMMKENVAFEQEKEGKSNEKNDFTKFKT K E N E K E 1 0 1 0 0 1 3 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 9 0 1092.5088 P83111;H0YNN5 P83111 244 252 LACTB Serine beta-lactamase-like protein LACTB, mitochondrial yes no 2 0.0036065 78.113 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4719400 4719400 0 4719400 4719400 0 0 0 0 3471 1671 3562 9162 14384 14384 1 ENVLIGDGAGFK SDTRGIVFEDVKVPKENVLIGDGAGFKVAM VPKENVLIGDGAGFKVAMGAFDKTRPVVAA K E N F K V 1 0 1 1 0 0 1 3 0 1 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1218.6245 B7Z9I1;B4DWX6;A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B4DVB1;A0A0S2Z3A5;B4DJE7;B4DVE0 B7Z9I1 224 235 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 1.6998E-05 104.79 2 2.6946 2.7059 0.16772 2 Median 2.6946 2.7059 0.16772 2 0 Median NaN NaN NaN 0 0 Median 46997000 12554000 34443000 46997000 12554000 34443000 0 0 0 3472 545 3563 9163;9164 14385;14386;14387;14388 14386 4 ENVLQYCR LYESVKKELDVKSQKENVLQYCRKSGLQTD LDVKSQKENVLQYCRKSGLQTDYATEKESA K E N C R K 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 1080.5022 P46013 P46013 255 262 MKI67 Antigen KI-67 yes yes 2 0.0019305 104.45 2 2 2.2906 2.2242 32.556 4 Median 1.5371 1.6207 11.547 2 0 Median 3.3477 2.8145 0.074994 2 0 Median 104580000 40715000 63870000 88008000 36905000 51103000 16577000 3810400 12767000 3473 1569 3564 9165;9166;9167;9168 14389;14390;14391;14392;14393 14389 5 ENVPPGPEVCITHQEGEK KASGGEIKIHKMEQKENVPPGPEVCITHQE PPGPEVCITHQEGEKISANENSLAVRSTPA K E N E K I 0 0 1 0 1 1 4 2 1 1 0 1 0 0 3 0 1 0 0 2 0 0 18 0 2018.9368 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2;F8VRN8 F8VQE1 147 164 LIMA1 LIM domain and actin-binding protein 1 yes no 3 9.4856E-06 65.808 1 2.0719 2.2301 NaN 1 Median 2.0719 2.2301 NaN 1 0 Median NaN NaN NaN 0 0 Median 33287000 10786000 22501000 33287000 10786000 22501000 0 0 0 3474 1010 3565 9169 14394 14394 1 ENVTVLDK REPPEDEEEEDGREKENVTVLDKTLSVNDV EEDGREKENVTVLDKTLSVNDVACMAGLLE K E N D K T 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 916.48656 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DXB7 Q86XI2 602 609 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.03177 51.066 1 2.7851 3.0952 NaN 1 Median 2.7851 3.0952 NaN 1 0 Median NaN NaN NaN 0 0 Median 50429000 9560600 40868000 50429000 9560600 40868000 0 0 0 3475 1887 3566 9170 14395;14396 14395 2 ENVYDELR DRFLICMLHKLGFDKENVYDELRQCIRNSP HKLGFDKENVYDELRQCIRNSPQFRFDWFL K E N L R Q 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 1036.4825 O60264;B7ZAX9;B4DZC0 O60264 967 974 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.1643E-13 148.38 2 2 5.1033 4.2154 26.317 3 Median 2.3735 2.7067 NaN 1 0 Median 5.1833 4.2676 1.7415 2 0 Median 209320000 35324000 174000000 176460000 29824000 146640000 32859000 5500000 27359000 3476 1391 3567 9171;9172;9173;9174 14397;14398;14399;14400;14401;14402 14399 6 ENYLEENLLYAPSLR AGWEEVLRWQDRSSRENYLEENLLYAPSLR ENYLEENLLYAPSLRFIHGLIKQFSENIYE R E N L R F 1 1 2 0 0 0 3 0 0 0 4 0 0 0 1 1 0 0 2 0 0 0 15 0 1822.9101 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 931 945 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.010196 50.897 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3504600 3504600 0 0 0 0 3504600 3504600 0 3477 122 3568 9175 14403 14403 1 EPAFEDITLESER ELDAVWEDIRERFVKEPAFEDITLESERKR VKEPAFEDITLESERKRIFKDFMHVLEHEC K E P E R K 1 1 0 1 0 0 4 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 13 0 1534.7151 O75400;B4DPY2;Q4ZG51 O75400 777 789 PRPF40A;FNBP3 Pre-mRNA-processing factor 40 homolog A yes no 2 0.006038 55.452 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9599100 9599100 0 9599100 9599100 0 0 0 0 3478 1404 3569 9176;9177 14404;14405;14406 14406 3 EPAFEDITLESERK ELDAVWEDIRERFVKEPAFEDITLESERKR KEPAFEDITLESERKRIFKDFMHVLEHECQ K E P R K R 1 1 0 1 0 0 4 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 14 1 1662.8101 O75400;B4DPY2;Q4ZG51 O75400 777 790 PRPF40A;FNBP3 Pre-mRNA-processing factor 40 homolog A yes no 3 0.025036 39.629 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3479 1404 3570 9178 14407 14407 1 EPAPETADGPYLVIVEQPK EYDDFKLNSSIVEPKEPAPETADGPYLVIV ETADGPYLVIVEQPKQRGFRFRYGCEGPSH K E P P K Q 2 0 0 1 0 1 3 1 0 1 1 1 0 0 4 0 1 0 1 2 0 0 19 0 2052.0415 Q00653;A0A1P8C958;D3DR86;M0R119 Q00653 29 47 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2 3.4847E-06 71.879 2 1 2.3284 2.1112 33.479 2 Median 2.5865 2.6752 NaN 1 0 Median 2.096 1.6662 NaN 1 0 Median 19478000 4462600 15015000 16361000 3561700 12799000 3116700 900980 2215800 3480 1674 3571 9179;9180;9181 14408;14409;14410;14411 14408 4 EPAQTEAAASTEPATR LERLQSRARERQQQREPAQTEAAASTEPAT PAQTEAAASTEPATRRRRRPRRRRRVNDAE R E P T R R 5 1 0 0 0 1 3 0 0 0 0 0 0 0 2 1 3 0 0 0 0 0 16 0 1628.7642 F1T0L5;Q8N8A6 F1T0L5 50 65 DDX51 ATP-dependent RNA helicase DDX51 yes no 2 0.0072393 35.006 2 1.6537 1.4913 1.8823 2 Median NaN NaN NaN 0 0 Median 1.6537 1.4913 1.8823 2 0 Median 1432400 446840 985510 0 0 0 1432400 446840 985510 3481 1251 3572 9182;9183 14412;14413 14412 2 EPEAAAPAPGTGGDSVCGETHR VRCRRLAHLLASAQKEPEAAAPAPGTGGDS APGTGGDSVCGETHRALQGAMEKLQSRFME K E P H R A 4 1 0 1 1 0 3 4 1 0 0 0 0 0 3 1 2 0 0 1 0 0 22 0 2164.9444 Q08379;Q5HYE0;A0A087WYC0 Q08379 778 799 GOLGA2;DKFZp686K0319 Golgin subfamily A member 2 yes no 3 4.0624E-09 77.221 2 1.176 1.1891 32.199 2 Median 1.176 1.1891 32.199 2 0 Median NaN NaN NaN 0 0 Median 18382000 9318300 9064100 18382000 9318300 9064100 0 0 0 3482 1692 3573 9184;9185 14414;14415;14416;14417;14418;14419 14419 6 EPEGTSHEFK RVPPVPPNVAFKAEKEPEGTSHEFKIKGRK FKAEKEPEGTSHEFKIKGRKASKPISDSRE K E P F K I 0 0 0 0 0 0 3 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 10 0 1159.5146 Q9Y483;B4DZG1;B4DZ69 Q9Y483 364 373 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.0075665 60.717 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3483 2143 3574 9186 14420 14420 1 EPELEDLTR TSFLGSDDIGNIDVREPELEDLTRYDVGAI GNIDVREPELEDLTRYDVGAIRAHNGSLQH R E P T R Y 0 1 0 1 0 0 3 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 0 1100.535 P49792;D3DX73 P49792 413 421 RANBP2;hCG_1994636 E3 SUMO-protein ligase RanBP2 yes no 2 0.015885 57.96 2 2.1139 2.1539 NaN 1 Median 2.1139 2.1539 NaN 1 0 Median NaN NaN NaN 0 0 Median 6945800 2861400 4084400 6945800 2861400 4084400 0 0 0 3484 1588 3575 9187;9188 14421;14422 14422 2 EPELLEPIPYEFMA PAPPREAHFVRTNGKEPELLEPIPYEFMA_ KEPELLEPIPYEFMA_______________ K E P M A - 1 0 0 0 0 0 4 0 0 1 2 0 1 1 3 0 0 0 1 0 0 0 14 0 1676.8008 Q6IAX2;P46778;Q59GK9 Q6IAX2 147 160 RPL21 60S ribosomal protein L21 yes no 2 5.3192E-16 128.36 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30611000 0 0 30611000 0 0 0 0 0 3485 1571 3576 9189;9190 14423;14424 14424 1350 2 EPELMPK IQEEAERMFTREFSKEPELMPKTPSQKNRR MFTREFSKEPELMPKTPSQKNRRKKRRISY K E P P K T 0 0 0 0 0 0 2 0 0 0 1 1 1 0 2 0 0 0 0 0 0 0 7 0 842.42079 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 52 58 INCENP Inner centromere protein yes no 2 0.014019 60.788 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19228000 19228000 0 19228000 19228000 0 0 0 0 3486 2059 3577 9191 14425 14425 1886 1 EPEQEPVPAQFQK QRRNNEELVVSASCKEPEQEPVPAQFQKVK CKEPEQEPVPAQFQKVKPPKTNHKRGRK__ K E P Q K V 1 0 0 0 0 3 3 0 0 0 0 1 0 1 3 0 0 0 0 1 0 0 13 0 1525.7413 G3XAG1;Q96ME7;B4DES6;B7Z9P6;Q658M0 G3XAG1 541 553 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2 1.6323E-19 149.17 2 2 0.6367 0.5966 16.023 4 Median 0.46809 0.50994 12.763 2 0 Median 0.80486 0.65128 2.9668 2 0 Median 102050000 64681000 37370000 84231000 55136000 29095000 17819000 9545200 8274200 3487 1275 3578 9192;9193;9194;9195 14426;14427;14428;14429;14430;14431;14432;14433 14427 8 EPESFPFVILGNK LSNWKKEFIYYADVKEPESFPFVILGNKID VKEPESFPFVILGNKIDISERQVSTEEAQA K E P N K I 0 0 1 0 0 0 2 1 0 1 1 1 0 2 2 1 0 0 0 1 0 0 13 0 1475.766 A0A024RBV5;P51151 A0A024RBV5 113 125 RAB9A Ras-related protein Rab-9A yes no 2 0.0002021 70.399 2 1 1.9608 1.8244 57.202 2 Median 2.5185 2.7339 NaN 1 0 Median 1.5266 1.2175 NaN 1 0 Median 28400000 11847000 16552000 25997000 10761000 15236000 2402800 1086900 1315900 3488 348 3579 9196;9197;9198 14434;14435;14436;14437;14438 14435 5 EPFNLFYIEK NYTIFYSISGPGVDKEPFNLFYIEKDTGDI PGVDKEPFNLFYIEKDTGDIFCTRSIDREK K E P E K D 0 0 1 0 0 0 2 0 0 1 1 1 0 2 1 0 0 0 1 0 0 0 10 0 1298.6547 Q9HB00;Q08554 Q9HB00 180 189 DSC1 Desmocollin-1 yes no 2 0.052955 46.001 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2630000 2630000 0 2630000 2630000 0 0 0 0 3489 1693 3580 9199 14439 14439 1 EPFTIAQGK KKVERLTMQVSSLQREPFTIAQGKGQKLCE VSSLQREPFTIAQGKGQKLCEIERIHFFLS R E P G K G 1 0 0 0 0 1 1 1 0 1 0 1 0 1 1 0 1 0 0 0 0 0 9 0 989.5182 B4DNW3;P35659;D6RDA2;D6R9L5 P35659 76 84 DEK Protein DEK no no 2 0.018672 51.854 2 2 0.73215 0.75474 2.3838 4 Linear 0.63471 0.75201 1.6044 2 0 Median 0.84438 0.72394 0.077501 2 0 Median 1410400000 837620000 572790000 1219100000 735670000 483450000 191290000 101950000 89342000 3490 1546;1018 3581 9200;9201;9202;9203 14440;14441;14442;14443;14444;14445;14446;14447 14442 8 EPGEIQYLIK VEADGDPNAGFEKNKEPGEIQYLIKWKGWS FEKNKEPGEIQYLIKWKGWSHIHNTWETEE K E P I K W 0 0 0 0 0 1 2 1 0 2 1 1 0 0 1 0 0 0 1 0 0 0 10 0 1188.639 O14646 O14646 312 321 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.00035656 88.948 2 1 0.84963 0.82538 5.3972 3 Plateau 0.82483 0.82538 6.1779 2 0 Median 0.92368 0.78129 NaN 1 0 Median 56821000 30377000 26444000 54763000 29276000 25487000 2057500 1101000 956530 3491 1366 3582 9204;9205;9206 14448;14449;14450;14451;14452 14451 5 EPGIPSLTPQAELPEPAVR NVCDKSSASIGDMEKEPGIPSLTPQAELPE PSLTPQAELPEPAVRSEKKRLRKPSKWLLE K E P V R S 2 1 0 0 0 1 3 1 0 1 2 0 0 0 5 1 1 0 0 1 0 0 19 0 2000.0579 B2RWP5;Q96L73;Q96MN8;Q96DQ7;Q8NB95 B2RWP5 981 999 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.0058563 30.961 2 1.7668 1.4964 10.329 2 Median NaN NaN NaN 0 0 Median 1.7668 1.4964 10.329 2 0 Median 10374000 4496000 5877900 0 0 0 10374000 4496000 5877900 3492 898 3583 9207;9208 14453;14454 14454 2 EPGSGSGGGVYWVDSQQK GDRLLVTKCGRLRHKEPGSGSGGGVYWVDS SGSGGGVYWVDSQQKRYVPVKGDHVIGIVT K E P Q K R 0 0 0 1 0 2 1 5 0 0 0 1 0 0 1 3 0 1 1 2 0 0 18 0 1836.8279 Q9NQT5;Q9NYS3 Q9NQT5 90 107 EXOSC3;PNAS-3 Exosome complex component RRP40 yes no 2 2.0162E-05 72.681 2 0.84699 0.85898 NaN 1 Median 0.84699 0.85898 NaN 1 0 Median NaN NaN NaN 0 0 Median 12887000 6472400 6414400 12887000 6472400 6414400 0 0 0 3493 2061 3584 9209;9210 14455;14456;14457 14457 3 EPHMCLVR SWFQPTIERVALNSREPHMCLVRDISNCWA RVALNSREPHMCLVRDISNCWAPKVETAIT R E P V R D 0 1 0 0 1 0 1 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 8 0 1040.4896 Q15061 Q15061 368 375 WDR43 WD repeat-containing protein 43 yes yes 2 0.0037883 81.297 3 0.9489 1.0372 NaN 1 Median 0.9489 1.0372 NaN 1 0 Median NaN NaN NaN 0 0 Median 39855000 22359000 17496000 39855000 22359000 17496000 0 0 0 3494 1752 3585 9211;9212;9213 14458;14459;14460;14461 14460 1600 4 EPIERPEEK SAGIPKVTSRCIDSKEPIERPEEKPKKEGF RCIDSKEPIERPEEKPKKEGFIRSSEGPKP K E P E K P 0 1 0 0 0 0 4 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 9 1 1125.5666 E7EPN9;Q9Y520;B4DM27;B4DQN8 E7EPN9 960 968 PRRC2C Protein PRRC2C yes no 2 0.010774 78.113 1 1.0093 1.1485 NaN 1 Median 1.0093 1.1485 NaN 1 0 Median NaN NaN NaN 0 0 Median 4192200 1913500 2278700 4192200 1913500 2278700 0 0 0 3495 1219 3586 9214 14462 14462 1 EPINSTTPFNSSK INNVLSKIGEVWASKEPINSTTPFNSSKIE SKEPINSTTPFNSSKIEEPSPIVYSLPAPE K E P S K I 0 0 2 0 0 0 1 0 0 1 0 1 0 1 2 3 2 0 0 0 0 0 13 0 1420.6834 Q8WYP5;B3KVE5 Q8WYP5 1070 1082 AHCTF1 Protein ELYS yes no 2 8.3835E-14 119.94 2 2 3.315 2.6182 11.627 2 Median NaN NaN NaN 0 0 Median 3.315 2.6182 11.627 2 0 Median 119050000 6653400 112400000 88421000 0 88421000 30627000 6653400 23974000 3496 1945 3587 9215;9216;9217;9218 14463;14464;14465;14466;14467;14468 14465 6 EPLEDGDPEDDRTLDDDELAEYDLDK SEDGMQSARTQARPREPLEDGDPEDDRTLD RTLDDDELAEYDLDKYDEEGDPDAETLGES R E P D K Y 1 1 0 9 0 0 5 1 0 0 4 1 0 0 2 0 1 0 1 0 0 0 26 1 3021.2735 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DJV5;Q86X79;Q05BL3;Q6PKI5;Q6PIN4;F8VZ56 Q9BV37 74 99 PWP1 Periodic tryptophan protein 1 homolog yes no 3 3.5725E-13 74.206 2 0.79571 0.91806 0.78343 2 Median 0.79571 0.91806 0.78343 2 0 Median NaN NaN NaN 0 0 Median 55876000 30218000 25658000 55876000 30218000 25658000 0 0 0 3497 339 3588 9219;9220 14469;14470;14471;14472;14473;14474;14475;14476 14472 8 EPLEFHAK ______________________________ ______________________________ K E P A K R 1 0 0 0 0 0 2 0 1 0 1 1 0 1 1 0 0 0 0 0 0 0 8 0 969.49198 B2R5U7;Q03701 B2R5U7 6 13 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.012693 67.032 2 2 1.1804 0.95424 1.0899 2 Median NaN NaN NaN 0 0 Median 1.1804 0.95424 1.0899 2 0 Median 38720000 30256000 8464000 23754000 23754000 0 14966000 6502000 8464000 3498 836;1683 3589 9221;9222;9223;9224 14477;14478;14479;14480;14481 14481 5 EPLFGISTGNLITGLAAGAK PLIQNVRKILESDRKEPLFGISTGNLITGL ISTGNLITGLAAGAKTYKMSMANRGQNQPV K E P A K T 3 0 1 0 0 0 1 4 0 2 3 1 0 1 1 1 2 0 0 0 0 0 20 0 1929.0571 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209;Q5R207;Q5R211 Q5R210 288 307 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 1.0014E-12 103.14 1 2.0178 2.0564 NaN 1 Median 2.0178 2.0564 NaN 1 0 Median NaN NaN NaN 0 0 Median 13244000 4185400 9058700 13244000 4185400 9058700 0 0 0 3499 148 3590 9225 14482 14482 1 EPLLENLTSEYDLDLFR KEKYMEHRQTYGNTREPLLENLTSEYDLDL LLENLTSEYDLDLFRRAQARASEDLEKLRL R E P F R R 0 1 1 2 0 0 3 0 0 0 5 0 0 1 1 1 1 0 1 0 0 0 17 0 2066.0208 O95251;E7EUP3;B7Z4D9;B3KVJ2;B4DG18 O95251 295 311 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 9.0325E-13 119.69 1 0.80011 0.86825 NaN 1 Median 0.80011 0.86825 NaN 1 0 Median NaN NaN NaN 0 0 Median 28011000 16165000 11846000 28011000 16165000 11846000 0 0 0 3500 1422 3591 9226 14483;14484 14483 2 EPLLTLVK AKEWQELDDAEKVQREPLLTLVKEIVPYNM DAEKVQREPLLTLVKEIVPYNMAHNAEHEA R E P V K E 0 0 0 0 0 0 1 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 8 0 911.56917 Q59EG8;Q13200;Q9NSM5 Q59EG8 187 194 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.020224 65.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9143200 0 9143200 9143200 0 9143200 0 0 0 3501 1707 3592 9227 14485 14485 1 EPLLVTNGADNALR NAHSTAIAGLTFLHREPLLVTNGADNALRI REPLLVTNGADNALRIWIFDGPTGEGRLLR R E P L R I 2 1 2 1 0 0 1 1 0 0 3 0 0 0 1 0 1 0 0 1 0 0 14 0 1481.7838 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 289 302 WDR36 WD repeat-containing protein 36 yes no 2 1.9348E-09 156.14 2 1 0.88694 1.0038 6.6657 3 Plateau 0.88149 0.99364 1.7332 2 0 Median 1.0866 0.88704 NaN 1 0 Median 155570000 79366000 76207000 139960000 72765000 67198000 15609000 6600400 9009100 3502 486 3593 9228;9229;9230 14486;14487;14488;14489;14490 14488 5 EPLPPIQQHIWNMLNPPAEVTTK QRLFQCLLHRALHPREPLPPIQQHIWNMLN HIWNMLNPPAEVTTKSQIPLSKIKTLFPLI R E P T K S 1 0 2 0 0 2 2 0 1 2 2 1 1 0 5 0 2 1 0 1 0 0 23 0 2652.3734 P13010;Q53T09 P13010 503 525 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 0.033811 13.896 2 0.34061 0.27531 6.3967 2 Median NaN NaN NaN 0 0 Median 0.34061 0.27531 6.3967 2 0 Median 46962000 34057000 12905000 0 0 0 46962000 34057000 12905000 3503 1476 3594 9231;9232 14491;14492;14493 14493 3 EPLSLINVR ARPGPGVWDPNWDRREPLSLINVRKRNVES PNWDRREPLSLINVRKRNVESGEEELASKL R E P V R K 0 1 1 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 1 0 0 9 0 1039.6026 Q96HS1 Q96HS1 66 74 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.00063538 96.492 2 1 1.8204 1.9591 15.339 3 Median 1.7687 1.949 0.73439 2 0 Median 3.0191 2.5417 NaN 1 0 Median 148010000 47940000 100070000 143450000 46799000 96648000 4567300 1140900 3426400 3504 1972 3595 9233;9234;9235 14494;14495;14496;14497;14498 14497 5 EPLSSETQYSVDTR YSLLMSIHNIDHAQREPLSSETQYSVDTRR REPLSSETQYSVDTRRPAPQKALYSTAMES R E P T R R 0 1 0 1 0 1 2 0 0 0 1 0 0 0 1 3 2 0 1 1 0 0 14 0 1610.7424 A6PW57;Q99755;B4DY52;A2A3N6 A6PW57 326 339 PIP5K1A;PIPSL Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein yes no 2 0.0024419 63.091 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3505 692 3596 9236 14499 14499 1 EPLTIQVLTVGNALRPK SSAALERIRSFSPLKEPLTIQVLTVGNALR LTIQVLTVGNALRPKIKYTYFVKKKKESFN K E P P K I 1 1 1 0 0 1 1 1 0 1 3 1 0 0 2 0 2 0 0 2 0 0 17 1 1848.0833 B2RB33;Q8NE26;Q5HYL0;Q9UHI8 B2RB33 802 818 ADAMTS1;DKFZp686E01144 A disintegrin and metalloproteinase with thrombospondin motifs 1 yes no 3 0.0056099 49.559 1 1 0.75601 0.64837 NaN 1 Median NaN NaN NaN 0 0 Median 0.75601 0.64837 NaN 1 0 Median 7057400 5651700 1405700 4326500 4326500 0 2730900 1325200 1405700 3506 877 3597 9237;9238 14500;14501;14502 14500 3 EPLTQAVGLSTQAEGTR VNVALNMLGELDKKKEPLTQAVGLSTQAEG LTQAVGLSTQAEGTRTLKSLLMFTMENCFY K E P T R T 2 1 0 0 0 2 2 2 0 0 2 0 0 0 1 1 3 0 0 1 0 0 17 0 1756.8955 Q5SRE5 Q5SRE5 1629 1645 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.049719 37.613 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3507 1816 3598 9239 14503 14503 1 EPLVATNLPGR QAAKKVHTSKGDLPREPLVATNLPGRGQLQ DLPREPLVATNLPGRGQLQKLASERNLFIS R E P G R G 1 1 1 0 0 0 1 1 0 0 2 0 0 0 2 0 1 0 0 1 0 0 11 0 1165.6455 P42166 P42166 254 264 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.0001254 96.034 2 1.2399 1.2717 3.7376 2 Median 1.2399 1.2717 3.7376 2 0 Median NaN NaN NaN 0 0 Median 35425000 15775000 19650000 35425000 15775000 19650000 0 0 0 3508 1562 3599 9240;9241 14504;14505;14506;14507 14506 4 EPLYVGVDDDK QTRKVEDLARISLKKEPLYVGVDDDKANAT SLKKEPLYVGVDDDKANATVDGLEQGYVVC K E P D K A 0 0 0 3 0 0 1 1 0 0 1 1 0 0 1 0 0 0 1 2 0 0 11 0 1248.5874 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452;Q59FR7 Q4ZG72 258 268 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.00053622 74.944 3 2 1.5294 1.2798 3.6504 2 Median NaN NaN NaN 0 0 Median 1.5294 1.2798 3.6504 2 0 Median 187380000 39241000 148140000 91950000 0 91950000 95427000 39241000 56187000 3509 303 3600 9242;9243;9244;9245;9246 14508;14509;14510;14511;14512 14510 5 EPMIGVNQELAYFYPELFR ERLHSMKEGIHAQQKEPMIGVNQELAYFYP GVNQELAYFYPELFRQFYQLDAYPSGAWYY K E P F R Q 1 1 1 0 0 1 3 1 0 1 2 0 1 2 2 0 0 0 2 1 0 0 19 0 2315.1296 CON__P02662 CON__P02662 133 151 yes yes 2 1.582E-06 67.964 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8434400 8434400 0 8434400 8434400 0 0 0 0 + 3510 1151 3601 9247 14513 14513 859 1 EPNPPIDEVISTPGVVAR QQLSATQKFRKLLSKEPNPPIDEVISTPGV PPIDEVISTPGVVARFVEFLKRKENCTLQF K E P A R F 1 1 1 1 0 0 2 1 0 2 0 0 0 0 4 1 1 0 0 3 0 0 18 0 1888.9894 Q5BKZ2;P52294;C9J352;C9JWD9;F2Z3G4;C9J4U1;C9JYI4 Q5BKZ2 113 130 KPNA1 Importin subunit alpha;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes no 2 7.2332E-06 82.069 2 1 1.0771 1.1513 11.274 3 Plateau 1.0708 1.1345 2.5823 2 0 Median 1.0877 0.93566 NaN 1 0 Median 59088000 28926000 30162000 51475000 25495000 25980000 7613600 3431500 4182100 3511 1600 3602 9248;9249;9250 14514;14515;14516;14517;14518 14515 5 EPNSENVDISSGGGVTGWK FLTLAEDILRKTPVKEPNSENVDISSGGGV ENVDISSGGGVTGWKSKCC___________ K E P W K S 0 0 2 1 0 0 2 4 0 1 0 1 0 0 1 3 1 1 0 2 0 0 19 0 1931.8861 P61026;Q53T70 P61026 178 196 RAB10 Ras-related protein Rab-10 yes no 2 0.00032277 61.409 2 1.4076 1.4414 15.201 2 Median 1.4076 1.4414 15.201 2 0 Median NaN NaN NaN 0 0 Median 20359000 8989500 11370000 20359000 8989500 11370000 0 0 0 3512 1627 3603 9251;9252 14519;14520;14521;14522;14523 14522 5 EPPEDEEEEDGREK VIRHCLNACIQRAVREPPEDEEEEDGREKE REPPEDEEEEDGREKENVTVLDKTLSVNDV R E P E K E 0 1 0 2 0 0 7 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 14 1 1686.6857 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 588 601 NCAPG2 Condensin-2 complex subunit G2 yes no 3 9.2612E-05 69.258 1 0.60697 0.67325 NaN 1 Median 0.60697 0.67325 NaN 1 0 Median NaN NaN NaN 0 0 Median 7886500 5308100 2578500 7886500 5308100 2578500 0 0 0 3513 1887 3604 9253 14524 14524 1 EPPGLIFNK EVVEATPEGACTEPREPPGLIFNKVEVSED ACTEPREPPGLIFNKVEVSEDEPASKAQRR R E P N K V 0 0 1 0 0 0 1 1 0 1 1 1 0 1 2 0 0 0 0 0 0 0 9 0 1013.5546 B3KNS8;O75683 B3KNS8 194 202 SURF6 Surfeit locus protein 6 yes no 2 0.00027271 103.91 2 1 0.7924 0.88916 2.1026 3 Median 0.78452 0.87583 2.1353 2 0 Median 1.1402 0.89832 NaN 1 0 Median 142710000 78279000 64434000 136890000 75405000 61482000 5825900 2874400 2951500 3514 918 3605 9254;9255;9256 14525;14526;14527;14528;14529 14528 5 EPPGSTAGLPQEPK QTLFGKKKSFDPSAREPPGSTAGLPQEPKT REPPGSTAGLPQEPKTTAEDGVPAPPLLDP R E P P K T 1 0 0 0 0 1 2 2 0 0 1 1 0 0 4 1 1 0 0 0 0 0 14 0 1406.7042 Q9BTC0 Q9BTC0 1334 1347 DIDO1 Death-inducer obliterator 1 yes yes 2 8.8545E-05 87.184 3 2 1.3716 1.3929 NaN 1 Median 1.3716 1.3929 NaN 1 0 Median NaN NaN NaN 0 0 Median 37929000 19564000 18366000 35161000 16795000 18366000 2768800 2768800 0 3515 2002 3606 9257;9258;9259;9260;9261 14530;14531;14532;14533;14534;14535 14533 6 EPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVR PAGPRRAPPPAVAAREPPLPPPPQPPAPPQ PPPQPQPPPEGGAVRAGGAARPVSLREVVR R E P V R A 2 1 0 0 0 7 2 2 0 0 1 0 0 0 18 0 0 0 0 1 0 0 34 0 3543.8263 Q6SPF0 Q6SPF0 208 241 SAMD1 Atherin yes yes 3 0.0068236 20.92 2 1.3297 1.1097 10.39 2 Median NaN NaN NaN 0 0 Median 1.3297 1.1097 10.39 2 0 Median 17756000 8955600 8800600 0 0 0 17756000 8955600 8800600 3516 1861 3607 9262;9263 14536;14537;14538;14539;14540;14541 14540 6 EPPQGAHFLSR PLKGRINLVLSRELKEPPQGAHFLSRSLDD RELKEPPQGAHFLSRSLDDALKLTEQPELA K E P S R S 1 1 0 0 0 1 1 1 1 0 1 0 0 1 2 1 0 0 0 0 0 0 11 0 1237.6204 B4DM58;B0YJ76;A0A024RAQ3;P00374 B4DM58 82 92 DHFR;DYR Dihydrofolate reductase yes no 2 0.005587 64.374 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3517 311 3608 9264 14542 14542 1 EPPTDVTPTFLTTGVLSTLR HNVNRVVYIFGPPVKEPPTDVTPTFLTTGV VTPTFLTTGVLSTLRQADFEAHNILRESGY K E P L R Q 0 1 0 1 0 0 1 1 0 0 3 0 0 1 3 1 6 0 0 2 0 0 20 0 2144.1365 B4DUT7;A0A140VJK6;P49915 B4DUT7 519 538 GMPS GMP synthase [glutamine-hydrolyzing] yes no 2 3.7927E-06 60.401 2 2.3839 2.444 4.4491 2 Median 2.3839 2.444 4.4491 2 0 Median NaN NaN NaN 0 0 Median 21647000 7854500 13793000 21647000 7854500 13793000 0 0 0 3518 604 3609 9265;9266 14543;14544;14545;14546 14544 4 EPQGIIACCNPVPPLVR LPNHMMLKIAEELPKEPQGIIACCNPVPPL QGIIACCNPVPPLVRQQINEMHLLIQQARE K E P V R Q 1 1 1 0 2 1 1 1 0 2 1 0 0 0 4 0 0 0 0 2 0 0 17 0 1918.9757 Q01780;B4DKG8 Q01780 547 563 EXOSC10 Exosome component 10 yes no 2 0.00081079 57.019 1 2 1.0572 0.8917 3.172 2 Median NaN NaN NaN 0 0 Median 1.0572 0.8917 3.172 2 0 Median 21694000 13436000 8258300 5454200 5454200 0 16240000 7981700 8258300 3519 1676 3610 9267;9268;9269 14547;14548;14549;14550;14551 14549 5 EPSEVPTPK QPPVSPGTALVGSQKEPSEVPTPKRPRGRP LVGSQKEPSEVPTPKRPRGRPKGSKKTGEG K E P P K R 0 0 0 0 0 0 2 0 0 0 0 1 0 0 3 1 1 0 0 1 0 0 9 0 982.49713 Q5T6U8;Q6IPL9;B4DWA0;A0A024RCT9;P17096 B4DWA0 47 55 HMGA1 High mobility group protein HMG-I/HMG-Y no no 1;2 0.00033401 101.72 3 2 0.73819 0.87414 54.711 5 Median 0.77055 0.92123 3.598 3 0 Median 0.3841 0.33562 1.3268 2 0 Median 5661200000 3321000000 2340200000 5154100000 2955900000 2198200000 507070000 365060000 142010000 3520 372;1823 3611 9270;9271;9272;9273;9274 14552;14553;14554;14555;14556;14557;14558;14559;14560;14561;14562;14563 14555 12 EPSGVAGVDGMLGR HLFLGRSLTLARPLKEPSGVAGVDGMLGRV KEPSGVAGVDGMLGRVPQSVVDEEDSGLQS K E P G R V 1 1 0 1 0 0 1 4 0 0 1 0 1 0 1 1 0 0 0 2 0 0 14 0 1343.6503 Q8TDD1 Q8TDD1 469 482 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 9.8786E-07 106.67 2 1.2052 1.3205 2.5945 2 Median 1.2052 1.3205 2.5945 2 0 Median NaN NaN NaN 0 0 Median 92533000 41808000 50725000 92533000 41808000 50725000 0 0 0 3521 1933 3612 9275;9276 14564;14565;14566 14566 1769 3 EPSPPIDEVINTPR LQLATTQKFRKLLSKEPSPPIDEVINTPRV KEPSPPIDEVINTPRVVDRFVEFLKRNENC K E P P R V 0 1 1 1 0 0 2 0 0 2 0 0 0 0 4 1 1 0 0 1 0 0 14 0 1562.794 B4DII5;B4DWX3;O60684;Q5TFJ7;S4R3E5;G1UI19 B4DII5 108 121 KPNA6 Importin subunit alpha;Importin subunit alpha-7 yes no 2 0.0028903 58.674 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3522 980 3613 9277;9278 14567;14568 14567 2 EPSVQEATSTSDILK KEKTPELPEPSVKVKEPSVQEATSTSDILK EPSVQEATSTSDILKVPKPEPIPEPKEPSP K E P L K V 1 0 0 1 0 1 2 0 0 1 1 1 0 0 1 3 2 0 0 1 0 0 15 0 1603.7941 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;E9PCT1;M0R088;B4DED5 A0A0S2Z4W1 232 246 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2 9.5158E-46 161.48 3 2 1.1344 1.226 51.42 4 Linear 0.99361 1.0235 9.3639 2 0 Median 0.52549 0.42247 3.8375 2 0 Median 48943000 26690000 22254000 37971000 19922000 18049000 10972000 6767500 4204200 3523 570 3614 9279;9280;9281;9282;9283 14569;14570;14571;14572;14573;14574;14575;14576;14577;14578 14570 10 EPTSSEQGGLEGSGSAAGEGK VDEPLETPLGHILGREPTSSEQGGLEGSGS QGGLEGSGSAAGEGKPALSEEERQEQTKRY R E P G K P 2 0 0 0 0 1 4 6 0 0 1 1 0 0 1 4 1 0 0 0 0 0 21 0 1933.8501 B4DU88;Q05BV2;B4DNC6;E9PJ81;E9PRQ7;A0A024R598;A0A024R539;Q04323 B4DU88 63 83 UBXN1;LOC51035 UBX domain-containing protein 1 yes no 2 1.0589E-21 119.45 2 1.9848 2.0061 13.592 2 Median 1.9848 2.0061 13.592 2 0 Median NaN NaN NaN 0 0 Median 13208000 4685400 8522300 13208000 4685400 8522300 0 0 0 3524 169 3615 9284;9285 14579;14580;14581;14582;14583 14579 5 EPVICTPVSSGFEK REPELPCGLAPAVSREPVICTPVSSGFEKS REPVICTPVSSGFEKSKVTINNKVILLKKE R E P E K S 0 0 0 0 1 0 2 1 0 1 0 1 0 1 2 2 1 0 0 2 0 0 14 0 1548.7494 B7ZLC9;Q8TEQ6 B7ZLC9 801 814 GEMIN5 Gem-associated protein 5 yes no 2 0.0055705 43.544 2 1.1351 1.189 NaN 1 Median 1.1351 1.189 NaN 1 0 Median NaN NaN NaN 0 0 Median 15705000 5368300 10336000 15705000 5368300 10336000 0 0 0 3525 1114 3616 9286;9287 14584;14585;14586 14585 3 EPVTPSALVLMSR APSGLSTLPQRVLRKEPVTPSALVLMSRSN RKEPVTPSALVLMSRSNVQPTAAPGQKVME K E P S R S 1 1 0 0 0 0 1 0 0 0 2 0 1 0 2 2 1 0 0 2 0 0 13 0 1398.7541 B2RC06;Q96GD4;J3KTD6;J3KRF8 Q96GD4 32 44 AURKB Aurora kinase B no no 2 0.00016444 63.727 2 1.4849 1.2311 NaN 1 Median NaN NaN NaN 0 0 Median 1.4849 1.2311 NaN 1 0 Median 12404000 3381500 9023000 0 0 0 12404000 3381500 9023000 3526 881;1967 3617;3618 9288;9289 14587;14588 14587 693 2 EPYNYFLLLR HKIVNSSMELAQTAKEPYNYFLLLRALFRS AQTAKEPYNYFLLLRALFRSIGGGSHDLLY K E P L R A 0 1 1 0 0 0 1 0 0 0 3 0 0 1 1 0 0 0 2 0 0 0 10 0 1326.6972 F2Z2U4;Q59FH1;H0Y4W2;Q9Y4A5 F2Z2U4 751 760 TRRAP Transformation/transcription domain-associated protein yes no 2 0.011292 61.999 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1770900 0 1770900 1770900 0 1770900 0 0 0 3527 1253 3619 9290 14589 14589 1 EPYQILLDGTFCQAALR AKKHLGFFRNNFGVREPYQILLDGTFCQAA YQILLDGTFCQAALRGRIQLREQLPRYLMG R E P L R G 2 1 0 1 1 2 1 1 0 1 3 0 0 1 1 0 1 0 1 0 0 0 17 0 1993.9931 Q9BRU9;G3XAM4;E5RGP0;E5RH13;E5RIC4 Q9BRU9 24 40 UTP23 rRNA-processing protein UTP23 homolog yes no 2 0.0029783 36.284 1 0.94635 0.78939 NaN 1 Median NaN NaN NaN 0 0 Median 0.94635 0.78939 NaN 1 0 Median 6601000 3466700 3134300 0 0 0 6601000 3466700 3134300 3528 1999 3620 9291 14590 14590 1 EQAAAAPFPSPAPASPAISVVGVSAGGHTLSRPPPAQVPR LMRAQAQEQERRERREQAAAAPFPSPAPAS GGHTLSRPPPAQVPREVLKVQTHLENPTRY R E Q P R E 9 2 0 0 0 2 1 3 1 1 1 0 0 1 9 5 1 0 0 4 0 0 40 1 3842.0228 B4DIA5;A0A024QZ23;P19532 B4DIA5 30 69 TFE3 Transcription factor E3 yes no 4 8.5252E-05 28.47 2 1.7612 1.5479 13.836 2 Median NaN NaN NaN 0 0 Median 1.7612 1.5479 13.836 2 0 Median 16429000 6421700 10007000 0 0 0 16429000 6421700 10007000 3529 9 3621 9292;9293 14591;14592;14593;14594 14592 4 EQADFALEALAK RIKVGRDYVQKAQTKEQADFALEALAKATY QTKEQADFALEALAKATYERLFRWLVLRLN K E Q A K A 4 0 0 1 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1304.6612 Q7Z406;M0QY43;B3KWH4 Q7Z406 434 445 MYH14 Myosin-14 yes no 2 2.4328E-05 101.38 2 2 2.788 2.2785 10.366 3 Median 1.7007 1.9605 NaN 1 0 Median 2.8644 2.3344 3.4277 2 0 Median 301100000 83545000 217560000 246000000 69807000 176190000 55106000 13738000 41368000 3530 1875 3622 9294;9295;9296;9297 14595;14596;14597;14598;14599;14600;14601;14602;14603;14604 14599 10 EQAELTGLR DGSLEKDRTLTPLGREQAELTGLRLASLGL LTPLGREQAELTGLRLASLGLKFNKIVHSS R E Q L R L 1 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1015.5298 Q96HS1 Q96HS1 126 134 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 2.059E-06 135.83 2 1 1.8249 2.0461 9.7833 2 Median 1.8249 2.0461 9.7833 2 0 Median NaN NaN NaN 0 0 Median 128190000 41668000 86523000 128190000 41668000 86523000 0 0 0 3531 1972 3623 9298;9299;9300 14605;14606;14607;14608;14609 14605 5 EQALSTLQLEHTSTQALVSELLPAK LGQELKAWQEKFFQKEQALSTLQLEHTSTQ HTSTQALVSELLPAKHLCQQLQAEQAAAEK K E Q A K H 3 0 0 0 0 3 3 0 1 0 6 1 0 0 1 3 3 0 0 1 0 0 25 0 2706.444 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1340 1364 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 1.3248E-21 109.85 2 2 1.078 1.0148 27.186 4 Median 0.77244 0.81063 0.61652 2 0 Median 1.5278 1.2964 3.4726 2 0 Median 404830000 176240000 228590000 72905000 41127000 31778000 331920000 135120000 196810000 3532 186;1747 3624 9301;9302;9303;9304 14610;14611;14612;14613;14614;14615;14616 14613 7 EQDQRPLHPVANPHAEISTK WNIFSEASNSEPVNKEQDQRPLHPVANPHA PLHPVANPHAEISTKVPASKVKDAVEQQGE K E Q T K V 2 1 1 1 0 2 2 0 2 1 1 1 0 0 3 1 1 0 0 1 0 0 20 1 2266.1454 Q9NX58 Q9NX58 149 168 LYAR Cell growth-regulating nucleolar protein yes yes 3;4 1.4995E-05 46.578 3 0.93077 1.0731 12.488 2 Median 0.93077 1.0731 12.488 2 0 Median NaN NaN NaN 0 0 Median 52147000 26463000 25684000 52147000 26463000 25684000 0 0 0 3533 2079 3625 9305;9306;9307 14617;14618;14619 14618 3 EQDVEVLEPLK VQNSNESISEQFRTREQDVEVLEPLKCELV FRTREQDVEVLEPLKCELVSGESTGNCEDR R E Q L K C 0 0 0 1 0 1 3 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 11 0 1297.6765 E7ETD6;Q12830;F5GXF5 E7ETD6 1310 1320 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00044305 78.098 1 0.64941 0.6751 NaN 1 Median 0.64941 0.6751 NaN 1 0 Median NaN NaN NaN 0 0 Median 12443000 7556400 4886300 12443000 7556400 4886300 0 0 0 3534 1224 3626 9308 14620;14621 14620 2 EQEAEPEEQEEDSSSDPR SDEEDEEFQFIKKAKEQEAEPEEQEEDSSS AEPEEQEEDSSSDPRLRRLQNRISEDVEER K E Q P R L 1 1 0 2 0 2 7 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 18 0 2089.8196 P55081 P55081 68 85 MFAP1 Microfibrillar-associated protein 1 yes yes 2 1.0344E-29 138.42 2 1.1134 1.1345 56.068 2 Median 1.1134 1.1345 56.068 2 0 Median NaN NaN NaN 0 0 Median 24409000 11151000 13257000 24409000 11151000 13257000 0 0 0 3535 1614 3627 9309;9310 14622;14623;14624;14625 14624 4 EQEELEEALEVER ENKDVIQKNKLKLTREQEELEEALEVERQE TREQEELEEALEVERQENEQRRLFIQKEEQ R E Q E R Q 1 1 0 0 0 1 7 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 13 0 1601.7421 A0A024R669;A0A024R688;P51948;H0YJ92;H0YJF2 A0A024R669 143 155 MNAT1 CDK-activating kinase assembly factor MAT1 yes no 2 0.00041265 86.463 4 1 1.1894 1.0361 NaN 1 Median NaN NaN NaN 0 0 Median 1.1894 1.0361 NaN 1 0 Median 5263600 3840900 1422700 2653500 2653500 0 2610000 1187300 1422700 3536 199 3628 9311;9312;9313;9314;9315 14626;14627;14628;14629;14630 14627 5 EQEITAVQAR AAAGEAKVKKQLVAREQEITAVQARMQASY QLVAREQEITAVQARMQASYREHVKEVQQL R E Q A R M 2 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1143.5884 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 752 761 RRBP1 Ribosome-binding protein 1 yes no 2 0.016214 56.916 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5844500 5844500 0 5844500 5844500 0 0 0 0 3537 471 3629 9316 14631 14631 1 EQELDTLK TKEKKDELCRLRNEKEQELDTLKRKSPSDL CRLRNEKEQELDTLKRKSPSDLWKEDLATF K E Q L K R 0 0 0 1 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 974.49204 P11388 P11388 1152 1159 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0013457 109.86 2 2 1.0108 1.0214 15.278 4 Median 0.7447 0.88437 5.9059 2 0 Median 1.326 1.1441 1.575 2 0 Median 2307300000 1258100000 1049200000 2044200000 1144500000 899770000 263060000 113590000 149470000 3538 1471 3630 9317;9318;9319;9320 14632;14633;14634;14635;14636;14637;14638;14639;14640;14641;14642;14643 14633 12 EQELQQTLQQEQSVLDQLR LQAEEKAHAFAVQQKEQELQQTLQQEQSVL QQTLQQEQSVLDQLRGEAEAARRAAEEAEE K E Q L R G 0 1 0 1 0 7 3 0 0 0 4 0 0 0 0 1 1 0 0 1 0 0 19 0 2312.1608 Q15149 Q15149 2199 2217 PLEC Plectin yes yes 2 3.6232E-08 92.939 2 2 1.4581 1.5297 14.267 3 Median 1.3744 1.4101 11.511 2 0 Median 2.1379 1.7274 NaN 1 0 Median 37854000 13365000 24489000 23312000 9651100 13661000 14541000 3713800 10827000 3539 1754 3631 9321;9322;9323;9324 14644;14645;14646;14647;14648;14649;14650;14651;14652 14644 9 EQELTQAIK MEKILEEKARQRERKEQELTQAIKKKESEI RQRERKEQELTQAIKKKESEIEKESQRKSI K E Q I K K 1 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 1058.5608 Q9H501 Q9H501 801 809 ESF1 ESF1 homolog yes yes 2 0.0024962 74.184 2 2 1.0544 0.9574 15.578 4 Median 0.79571 0.84662 0.97697 2 0 Median 1.4009 1.1055 3.9221 2 0 Median 78138000 47554000 30584000 70115000 44537000 25577000 8023200 3016800 5006300 3540 2033 3632 9325;9326;9327;9328 14653;14654;14655;14656 14653 4 EQEPTERPLK GLTLKELQNRLRRKREQEPTERPLKGIQSR LRRKREQEPTERPLKGIQSRLRKKRREEGP R E Q L K G 0 1 0 0 0 1 3 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 10 1 1225.6303 Q9BTC0 Q9BTC0 173 182 DIDO1 Death-inducer obliterator 1 yes yes 2 0.036138 58.433 1 1.2536 1.0697 NaN 1 Median NaN NaN NaN 0 0 Median 1.2536 1.0697 NaN 1 0 Median 2936100 1341000 1595100 0 0 0 2936100 1341000 1595100 3541 2002 3633 9329 14657;14658 14658 2 EQEVNILK TLDSTAAQQELRSKREQEVNILKKTLEEEA QELRSKREQEVNILKKTLEEEAKTHEAQIQ R E Q L K K 0 0 1 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 971.52876 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1166 1173 MYH9 Myosin-9 yes no 2 0.0074104 82.671 2 3.2276 2.6356 NaN 1 Median NaN NaN NaN 0 0 Median 3.2276 2.6356 NaN 1 0 Median 8780400 1186600 7593800 0 0 0 8780400 1186600 7593800 3542 81 3634 9330;9331 14659;14660 14659 2 EQFWEQAK YQKTDAAVEMKRINREQFWEQAKKEEELRK EMKRINREQFWEQAKKEEELRKEEERKKAL R E Q A K K 1 0 0 0 0 2 2 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 8 0 1064.4927 Q16643;D6R9W4;B3KSQ7 Q16643 178 185 DBN1 Drebrin yes no 2 0.038104 54.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4092600 4092600 0 4092600 4092600 0 0 0 0 3543 1773 3635 9332 14661 14661 1 EQGPYETYEGSPVSK TIYYGALEASCDLAKEQGPYETYEGSPVSK EQGPYETYEGSPVSKGILQYDMWNVTPTDL K E Q S K G 0 0 0 0 0 1 3 2 0 0 0 1 0 0 2 2 1 0 2 1 0 0 15 0 1669.7471 B4DNN4;Q53GZ5;P23921;B4E0I8;B4DS95;B4DXD1;E9PL69;B4DXB0 B4DNN4 519 533 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.00011479 81.565 3 3.3527 3.5088 1.5308 2 Median 3.3527 3.5088 1.5308 2 0 Median NaN NaN NaN 0 0 Median 49609000 9537900 40071000 49609000 9537900 40071000 0 0 0 3544 1014 3636 9333;9334;9335 14662;14663;14664;14665;14666 14665 5 EQGQAPITPQQGQALAK KKDLRAQPDTLRRLKEQGQAPITPQQGQAL GQAPITPQQGQALAKQIHAVRYLECSALQQ K E Q A K Q 3 0 0 0 0 5 1 2 0 1 1 1 0 0 2 0 1 0 0 0 0 0 17 0 1763.9166 Q6ICQ8;P84095 Q6ICQ8 131 147 ARHG;RHOG Rho-related GTP-binding protein RhoG yes no 2 1.584E-09 102.97 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12708000 0 12708000 12708000 0 12708000 0 0 0 3545 1672 3637 9336 14667 14667 1 EQGVTFPSGDIQEQLIR YATILNAGTNTDGFKEQGVTFPSGDIQEQL GVTFPSGDIQEQLIRSLYQSAGVAPESFEY K E Q I R S 0 1 0 1 0 3 2 2 0 2 1 0 0 1 1 1 1 0 0 1 0 0 17 0 1915.964 A0A0U1RQF0;P49327 A0A0U1RQF0 258 274 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.9508E-07 98.337 2 2.7156 2.8694 9.1385 2 Median 2.7156 2.8694 9.1385 2 0 Median NaN NaN NaN 0 0 Median 52985000 13637000 39349000 52985000 13637000 39349000 0 0 0 3546 587 3638 9337;9338 14668;14669;14670 14668 3 EQGYDVIAYLANIGQK YSGGLDTSCILVWLKEQGYDVIAYLANIGQ QGYDVIAYLANIGQKEDFEEARKKALKLGA K E Q Q K E 2 0 1 1 0 2 1 2 0 2 1 1 0 0 0 0 0 0 2 1 0 0 16 0 1780.8996 Q5T6L4;P00966;A8KAP9;A0A0S2Z3D8;Q5T6L6;A0A0S2Z3B6;A0A0S2Z3F1;Q5T6L5 Q5T6L4 26 41 ASS;ASS1 Argininosuccinate synthase yes no 2 0.00016667 61.435 2 4.6821 4.9918 NaN 1 Median 4.6821 4.9918 NaN 1 0 Median NaN NaN NaN 0 0 Median 41063000 5759200 35303000 41063000 5759200 35303000 0 0 0 3547 1437 3639 9339;9340 14671;14672;14673 14672 3 EQIDIFEGIK DIEEVAASNPELIFKEQIDIFEGIKDSQAQ ELIFKEQIDIFEGIKDSQAQRMAENLGFVG K E Q I K D 0 0 0 1 0 1 2 1 0 3 0 1 0 1 0 0 0 0 0 0 0 0 10 0 1190.6183 A0A024R325;Q96I99;Q3ZCW5;E9PDQ8;B7Z2D5;H0Y852;Q9Y436 A0A024R325 191 200 SUCLG2;DKFZp586M2023 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.010142 53.756 1 2.3713 2.3901 NaN 1 Median 2.3713 2.3901 NaN 1 0 Median NaN NaN NaN 0 0 Median 13383000 4081400 9301600 13383000 4081400 9301600 0 0 0 3548 126 3640 9341 14674 14674 1 EQIQNQLDHLK GHSVLPLEEAVEGFKEQIQNQLDHLKRVKD EGFKEQIQNQLDHLKRVKDLKKRRRAQGEQ K E Q L K R 0 0 1 1 0 3 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1364.7048 P14373;Q59EC6;A0A0G2JIZ4 P14373 141 151 TRIM27 Zinc finger protein RFP yes no 2 0.0019878 78.934 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7935900 7935900 0 7935900 7935900 0 0 0 0 3549 1480 3641 9342 14675;14676 14676 2 EQISDIDDAVR RKGISLNPEQWSQLKEQISDIDDAVRKL__ SQLKEQISDIDDAVRKL_____________ K E Q V R K 1 1 0 3 0 1 1 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 11 0 1259.5994 Q6IBA2;Q59G24;P53999;Q6E433 Q6IBA2 115 125 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2 7.8316E-06 109.66 2 2 0.44485 0.44544 71.514 4 Median 0.7171 0.83307 4.6764 2 0 Median 0.28072 0.24168 2.6134 2 0 Median 489060000 306430000 182630000 422370000 253950000 168420000 66693000 52479000 14214000 3550 1608 3642 9343;9344;9345;9346 14677;14678;14679;14680;14681;14682;14683;14684;14685 14679 9 EQITISQLSLVDLAGSER QAPLDADGDNVLQEKEQITISQLSLVDLAG TISQLSLVDLAGSERTNRTRAEGNRLREAG K E Q E R T 1 1 0 1 0 2 2 1 0 2 3 0 0 0 0 3 1 0 0 1 0 0 18 0 1958.032 H7BYN4;Q02241;H0YKQ5 H7BYN4 326 343 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 2.0844E-15 102.5 2 2 1.1317 1.0377 15.666 4 Median 0.87521 0.88391 15.602 2 0 Median 1.3277 1.103 1.5497 2 0 Median 55264000 27411000 27853000 36364000 19179000 17185000 18900000 8232800 10668000 3551 1312 3643 9347;9348;9349;9350 14686;14687;14688;14689;14690;14691 14686 5 EQITQHIADLSSK LTELEGWEELEDNEKEQITQHIADLSSKAA EKEQITQHIADLSSKAAGTPKKKAVVQAKL K E Q S K A 1 0 0 1 0 2 1 0 1 2 1 1 0 0 0 2 1 0 0 0 0 0 13 0 1468.7522 P49916;K7ERZ5;K7ENR9;Q96DF0 P49916 175 187 LIG3 DNA ligase 3 yes no 2;3 4.2375E-06 122.55 4 0.6415 0.66274 17.936 3 Plateau 0.6415 0.66274 17.936 3 0 Plateau NaN NaN NaN 0 0 Median 59046000 37855000 21191000 59046000 37855000 21191000 0 0 0 3552 1589 3644 9351;9352;9353;9354 14692;14693;14694;14695;14696;14697 14693 5 EQIVPKPEEEVAQK YMSSPCHIEMILTEKEQIVPKPEEEVAQKK KEQIVPKPEEEVAQKKK_____________ K E Q Q K K 1 0 0 0 0 2 4 0 0 1 0 2 0 0 2 0 0 0 0 2 0 0 14 1 1622.8516 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8 A0A087WXM6 154 167 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 3.083E-13 130.56 5 3 0.68706 0.73668 7.2057 8 Median 0.67258 0.78856 6.2258 5 0 Median 0.83479 0.70181 2.6209 3 0 Plateau 4832500000 2846300000 1986200000 4231900000 2530500000 1701400000 600570000 315830000 284750000 3553 106 3645 9355;9356;9357;9358;9359;9360;9361;9362 14698;14699;14700;14701;14702;14703;14704;14705;14706;14707;14708;14709;14710;14711;14712 14702 14 EQIVPKPEEEVAQKK YMSSPCHIEMILTEKEQIVPKPEEEVAQKK EQIVPKPEEEVAQKKK______________ K E Q K K K 1 0 0 0 0 2 4 0 0 1 0 3 0 0 2 0 0 0 0 2 0 0 15 2 1750.9465 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8 A0A087WXM6 154 168 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 1.3915E-06 102.62 3 2 0.81373 0.84353 7.0535 4 Median 0.73395 0.87055 9.6995 2 0 Median 0.86982 0.83714 6.3137 2 0 Median 323500000 173710000 149780000 184900000 97392000 87509000 138600000 76322000 62274000 3554 106 3646 9363;9364;9365;9366;9367 14713;14714;14715;14716;14717;14718;14719;14720;14721 14715 9 EQIVVDLSHPGVSEDDQVSR DEGAHLHIYDPKVPREQIVVDLSHPGVSED DLSHPGVSEDDQVSRLVTISKDPYEACDGA R E Q S R L 0 1 0 3 0 2 2 1 1 1 1 0 0 0 1 3 0 0 0 4 0 0 20 0 2208.0659 O60701;Q9NQ82 O60701 374 393 UGDH;GDH UDP-glucose 6-dehydrogenase yes no 3 1.5562E-07 74.364 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22525000 0 22525000 22525000 0 22525000 0 0 0 3555 1397 3647 9368;9369 14722;14723 14723 2 EQIYDVYR LVLDEADEMLNKGFKEQIYDVYRYLPPATQ MLNKGFKEQIYDVYRYLPPATQVVLISATL K E Q Y R Y 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 2 1 0 0 8 0 1084.5189 A0A024R8W0;P38919 A0A024R8W0 199 206 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.010329 72.485 2 1 1.8128 2.0169 21.369 3 Plateau 1.7991 1.9681 9.5709 2 0 Median 1.6041 1.3854 NaN 1 0 Median 94245000 33470000 60775000 91520000 32541000 58979000 2724400 928890 1795500 3556 261 3648 9370;9371;9372 14724;14725;14726;14727;14728 14724 5 EQLAELQSGFVK RTTISRALSQNRELKEQLAELQSGFVKLTN ELKEQLAELQSGFVKLTNENMEITSALQSE K E Q V K L 1 0 0 0 0 2 2 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1347.7034 Q08379 Q08379 547 558 GOLGA2 Golgin subfamily A member 2 yes yes 2 0.0021009 70.496 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11947000 0 11947000 11947000 0 11947000 0 0 0 3557 1692 3649 9373 14729 14729 1 EQLAQAMFDHIPVGVGSK LLRTNLDESDVQPVKEQLAQAMFDHIPVGV AQAMFDHIPVGVGSKGVIPMNAKDLEEALE K E Q S K G 2 0 0 1 0 2 1 2 1 1 1 1 1 1 1 1 0 0 0 2 0 0 18 0 1925.9669 Q9Y3I0;B4DNA0;B4DNG5 Q9Y3I0 141 158 RTCB tRNA-splicing ligase RtcB homolog yes no 3 8.1916E-06 64.83 2 1 1.8149 2.0072 37.619 3 Median 1.933 2.1136 7.3088 2 0 Median 1.3595 1.1085 NaN 1 0 Median 82525000 27497000 55028000 80639000 26744000 53894000 1886300 752480 1133800 3558 2137 3650;3651 9374;9375;9376 14730;14731;14732 14731 1972 3 EQLAQAVAR PPSVNRTEIVFTGEKEQLAQAVARIKKIYE VFTGEKEQLAQAVARIKKIYEEKKKKTTTI K E Q A R I 3 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 984.53524 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H0Y394;Q6ZS03;H7C0A4;Q5HYC5 A0A024R4E5 275 283 HDLBP;DKFZp686L08115 Vigilin yes no 2 0.0093753 64.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3559 154 3652 9377 14733 14733 1 EQLDNQLDAYMSK RGRGRGALARPVLTKEQLDNQLDAYMSKTK TKEQLDNQLDAYMSKTKGHLDAELDAYMAQ K E Q S K T 1 0 1 2 0 2 1 0 0 0 2 1 1 0 0 1 0 0 1 0 0 0 13 0 1553.7032 X6R700;Q9Y3Y2 X6R700 189 201 CHTOP Chromatin target of PRMT1 protein yes no 2 0.0055469 49.081 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1025800 1025800 0 0 0 0 1025800 1025800 0 3560 2141 3653 9378 14734 14734 1982 1 EQLEEEEEAK STKLKQVEDEKNSFREQLEEEEEAKHNLEK KNSFREQLEEEEEAKHNLEKQIATLHAQVA R E Q A K H 1 0 0 0 0 1 6 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1232.5408 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1343 1352 MYH9 Myosin-9 yes no 2 2.253E-09 128.36 1 1.7882 2.0067 NaN 1 Median 1.7882 2.0067 NaN 1 0 Median NaN NaN NaN 0 0 Median 67091000 23757000 43334000 67091000 23757000 43334000 0 0 0 3561 81 3654 9379 14735;14736 14736 2 EQLEGLLER NFVQFRSMRRARDVREQLEGLLERVEVGLS RARDVREQLEGLLERVEVGLSSCQGDYIRV R E Q E R V 0 1 0 0 0 1 3 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1085.5717 Q9P186;Q5SQH5;A0A140T8Y5;B4DZ28;Q5SQH4;O60231 Q9P186 435 443 DHX16;DBP2 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 0.030087 46.001 1 0.59041 0.58901 NaN 1 Median 0.59041 0.58901 NaN 1 0 Median NaN NaN NaN 0 0 Median 16673000 9389900 7283300 16673000 9389900 7283300 0 0 0 3562 597 3655 9380 14737 14737 1 EQLELFQNIR LYVMDLSEQCGHGLREQLELFQNIRPLFIN GHGLREQLELFQNIRPLFINKPLIVVANKC R E Q I R P 0 1 1 0 0 2 2 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 10 0 1288.6776 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 265 274 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 6.7166E-06 107.69 2 1.1241 1.2302 NaN 1 Median 1.1241 1.2302 NaN 1 0 Median NaN NaN NaN 0 0 Median 43561000 17370000 26191000 43561000 17370000 26191000 0 0 0 3563 1183 3656 9381;9382 14738;14739;14740 14740 3 EQLELFQNIRPLFINK LYVMDLSEQCGHGLREQLELFQNIRPLFIN QLELFQNIRPLFINKPLIVVANKCDVKRIA R E Q N K P 0 1 2 0 0 2 2 0 0 2 3 1 0 2 1 0 0 0 0 0 0 0 16 1 2001.1047 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 265 280 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2;3 5.4165E-10 132.32 5 2 1.3199 1.4106 14.071 5 Median 1.1731 1.4106 10.275 3 0 Median 1.4688 1.2715 17.665 2 0 Median 340450000 151280000 189170000 272040000 125200000 146840000 68409000 26081000 42328000 3564 1183 3657 9383;9384;9385;9386;9387;9388;9389 14741;14742;14743;14744;14745;14746;14747;14748;14749;14750;14751;14752;14753 14745 13 EQLETLRK PSFADMEVLYWTHVKEQLETLRKLQRREVA LYWTHVKEQLETLRKLQRREVAEQWLRPAE K E Q R K L 0 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 1 1015.5662 A0A0A6YYG7;Q6IBW4 A0A0A6YYG7 399 406 NCAPH2 Condensin-2 complex subunit H2 yes no 2 0.00057656 133.6 1 2 1.9022 1.5926 26.8 3 Median 0.89049 1.04 NaN 1 0 Median 1.9644 1.6481 4.8452 2 0 Median 61174000 31680000 29494000 48249000 27183000 21065000 12925000 4497100 8428200 3565 491 3658 9390;9391;9392 14754;14755;14756;14757 14755 4 EQLGEEIDSK SIEMPNISYAWKELKEQLGEEIDSKVKGMV WKELKEQLGEEIDSKVKGMVFLKGKLGVCF K E Q S K V 0 0 0 1 0 1 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1146.5404 Q9NR30;Q8NI92 Q9NR30 659 668 DDX21;OK/SW-cl.65 Nucleolar RNA helicase 2 yes no 2 9.7768E-06 105.4 2 2 1.18 1.1027 12.261 4 Median 1.0916 1.2476 6.5155 2 0 Median 1.2107 1.0193 0.19685 2 0 Median 445330000 203500000 241830000 341090000 156130000 184950000 104240000 47371000 56872000 3566 2065 3659 9393;9394;9395;9396 14758;14759;14760;14761;14762;14763 14759 6 EQLHLVMQGDVIR LCFRLLGAALPLLTKEQLHLVMQGDVIRHY TKEQLHLVMQGDVIRHYGEHVCTAKLPKQF K E Q I R H 0 1 0 1 0 2 1 1 1 1 2 0 1 0 0 0 0 0 0 2 0 0 13 0 1536.8082 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 319 331 MYBBP1A Myb-binding protein 1A yes no 3 6.8422E-05 67.095 1 1.4583 1.561 NaN 1 Median 1.4583 1.561 NaN 1 0 Median NaN NaN NaN 0 0 Median 25059000 9697800 15361000 25059000 9697800 15361000 0 0 0 3567 1997 3660 9397 14764;14765 14764 1834 2 EQLLQSNPVLEAFGNAK VAAVCGKGAEVNQVKEQLLQSNPVLEAFGN LLQSNPVLEAFGNAKTVRNDNSSRFGKYMD K E Q A K T 2 0 2 0 0 2 2 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 17 0 1856.9632 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5;C9JYW1;Q14777 E9PDF6 140 156 MYO1B Unconventional myosin-Ib no no 2 2.0461E-05 83.617 1 1.8602 1.5151 NaN 1 Median NaN NaN NaN 0 0 Median 1.8602 1.5151 NaN 1 0 Median 7420000 4459400 2960600 0 0 0 7420000 4459400 2960600 3568 805 3661 9398 14766;14767 14766 2 EQLMTVLQAGK SEEEERDGDVDQGFREQLMTVLQAGKALGG QGFREQLMTVLQAGKALGGEDSENEEELGD R E Q G K A 1 0 0 0 0 2 1 1 0 0 2 1 1 0 0 0 1 0 0 1 0 0 11 0 1216.6486 Q9BQG0;I3L1L3;I3L311 Q9BQG0 758 768 MYBBP1A Myb-binding protein 1A yes no 2 2.6418E-05 94.692 4 1 0.56999 0.59201 NaN 1 Median 0.56999 0.59201 NaN 1 0 Median NaN NaN NaN 0 0 Median 41775000 35967000 5808100 40637000 34828000 5808100 1138100 1138100 0 3569 1997 3662 9399;9400;9401;9402;9403 14768;14769;14770;14771;14772 14770 1835 5 EQLRQEQALLEEIER EQIQAMPLADSQAVREQLRQEQALLEEIER EQLRQEQALLEEIERHGEKVEECQRFAKQY R E Q E R H 1 2 0 0 0 3 5 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 15 1 1882.9749 Q15149 Q15149 1383 1397 PLEC Plectin yes yes 3 0.0015603 43.297 1 1 1.9649 1.7884 NaN 1 Median NaN NaN NaN 0 0 Median 1.9649 1.7884 NaN 1 0 Median 2488700 1006000 1482700 0 0 0 2488700 1006000 1482700 3570 1754 3663 9404;9405 14773;14774 14774 2 EQLSLPAEFPDK LMNSFGFPQYVKIFKEQLSLPAEFPDKVFA IFKEQLSLPAEFPDKVFAEKWNENVQYLSE K E Q D K V 1 0 0 1 0 1 2 0 0 0 2 1 0 1 2 1 0 0 0 0 0 0 12 0 1372.6874 A8K7H4;O43929;Q96B14;B7Z2M4;Q53TH5;B7Z632 A8K7H4 232 243 ORC4;ORC4L Origin recognition complex subunit 4 yes no 2 0.021142 38.875 1 1.5154 1.1986 NaN 1 Median NaN NaN NaN 0 0 Median 1.5154 1.1986 NaN 1 0 Median 5082800 1772100 3310700 0 0 0 5082800 1772100 3310700 + 3571 772 3664 9406 14775;14776 14776 2 EQLTPSQIMSLEK RAEWQVYKEEISRFKEQLTPSQIMSLEKEI FKEQLTPSQIMSLEKEIMDKHLKRKAMTKK K E Q E K E 0 0 0 0 0 2 2 0 0 1 2 1 1 0 1 2 1 0 0 0 0 0 13 0 1502.765 H7BYN3;Q6LES8;E5KSX8;E5KSU5;Q00059 H7BYN3 101 113 TFAM Transcription factor A, mitochondrial yes no 2 0.00055161 73.632 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22564000 0 22564000 20101000 0 20101000 2462700 0 2462700 3572 1209 3665 9407;9408 14777;14778 14777 926 2 EQMAQQLAEETQGFQR KELAQEQARRLQEDKEQMAQQLAEETQGFQ QMAQQLAEETQGFQRTLEAERQRQLEMSAE K E Q Q R T 2 1 0 0 0 5 3 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 16 0 1892.8687 Q15149 Q15149 2488 2503 PLEC Plectin yes yes 2 7.4766E-10 104.24 3 1.2386 1.2309 NaN 1 Median 1.2386 1.2309 NaN 1 0 Median NaN NaN NaN 0 0 Median 12970000 2840500 10129000 12970000 2840500 10129000 0 0 0 3573 1754 3666 9409;9410;9411 14779;14780;14781 14779 1612 3 EQMIDLQNLLTTQSPSVK TPNNRPDAPKEKKKKEQMIDLQNLLTTQSP IDLQNLLTTQSPSVKSLAVPTIEELEDEEE K E Q V K S 0 0 1 1 0 3 1 0 0 1 3 1 1 0 1 2 2 0 0 1 0 0 18 0 2044.0511 Q9BVJ6;B4E343 Q9BVJ6 556 573 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 8.5854E-23 133.14 2 2 1.3984 1.2551 29.181 4 Median 1.6194 1.6493 8.4978 2 0 Median 1.2445 1.0024 1.664 2 0 Median 104810000 39969000 64844000 59740000 19397000 40342000 45073000 20572000 24501000 3574 2008 3667 9412;9413;9414;9415 14782;14783;14784;14785 14785 1849 4 EQMRLLK E Q L K 0 1 0 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 7 1 916.51642 REV__B5LY70 yes no 2 0.035193 58.981 1 1.2134 1.4 NaN 1 Median 1.2134 1.4 NaN 1 0 Median NaN NaN NaN 0 0 Median 29632000 15101000 14530000 29632000 15101000 14530000 0 0 0 + 3575 2167 3668 9416 14786 14786 2011 1 EQNIVFNAETYSNLIK LNQKKGAYDIFLNAKEQNIVFNAETYSNLI QNIVFNAETYSNLIKLLMSEDYFTQAMEVK K E Q I K L 1 0 3 0 0 1 2 0 0 2 1 1 0 1 0 1 1 0 1 1 0 0 16 0 1881.9472 E5KNY5;P42704;B4DSR0 E5KNY5 1060 1075 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 3.9642E-06 111.79 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23161000 23161000 0 19787000 19787000 0 3373900 3373900 0 3576 1207 3669 9417;9418;9419;9420 14787;14788;14789;14790 14787 4 EQNLSSQVECLELEK RVAALHNDQEACKAKEQNLSSQVECLELEK EQNLSSQVECLELEKAQLLQGLDEAKNNYI K E Q E K A 0 0 1 0 1 2 4 0 0 0 3 1 0 0 0 2 0 0 0 1 0 0 15 0 1804.8513 P49454 P49454 2564 2578 CENPF Centromere protein F yes yes 2 2.0058E-06 92.856 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7481900 0 7481900 5653800 0 5653800 1828100 0 1828100 3577 1581 3670 9421;9422 14791;14792 14791 2 EQPPGYAIDTVQVNGQEK LQAFLGRGLGHQDTREQPPGYAIDTVQVNG PGYAIDTVQVNGQEKYLILCEVGTDGLLAT R E Q E K Y 1 0 1 1 0 3 2 2 0 1 0 1 0 0 2 0 1 0 1 2 0 0 18 0 1971.9538 Q8IXI1 Q8IXI1 448 465 RHOT2 Mitochondrial Rho GTPase 2 yes yes 2 0.04567 37.156 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3578 1893 3671 9423 14793 14793 1 EQPPTEPGPQSASEVEK SPKESKKRKLELSRREQPPTEPGPQSASEV PPTEPGPQSASEVEKIALNLEGCALSQGSL R E Q E K I 1 0 0 0 0 2 4 1 0 0 0 1 0 0 4 2 1 0 0 1 0 0 17 0 1808.8428 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2;B3KMQ6;V9H0E3 Q6PK21 249 265 OGFR Opioid growth factor receptor yes no 2 0.00019612 50.088 1 1.4488 1.4872 NaN 1 Median 1.4488 1.4872 NaN 1 0 Median NaN NaN NaN 0 0 Median 9472500 3297900 6174600 9472500 3297900 6174600 0 0 0 3579 469 3672 9424 14794 14794 1 EQPQLTSTCHIAISNSENLLGK EDLSGIAEMFKTPVKEQPQLTSTCHIAISN TCHIAISNSENLLGKQFQGTDSGEEPLLPT K E Q G K Q 1 0 2 0 1 2 2 1 1 2 3 1 0 0 1 3 2 0 0 0 0 0 22 0 2439.2064 P46013;Q70L73 P46013 765 786 MKI67 Antigen KI-67 no no 3 2.1194E-07 51.469 2 2 2.4815 2.4521 23.396 4 Median 1.779 2.0155 2.0904 2 0 Median 3.4875 3.0161 3.6339 2 0 Median 571720000 136340000 435380000 274340000 72173000 202160000 297380000 64166000 233220000 3580 1569;1864 3673 9425;9426;9427;9428 14795;14796;14797;14798;14799;14800;14801;14802 14796 8 EQQEAIEHIDEVQNEIDR MMPRSHQPPPPPHEKEQQEAIEHIDEVQNE EAIEHIDEVQNEIDRLNEQASEEILKVEQK K E Q D R L 1 1 1 2 0 3 5 0 1 3 0 0 0 0 0 0 0 0 0 1 0 0 18 0 2194.0138 A0A0C4DFV9;B2RCX0;A0A024R895;Q5VXV3;A0A087X027;Q01105;P0DME0 A0A0C4DFV9 16 33 SET;SETSIP Protein SET;Protein SETSIP yes no 3 0.011607 32.329 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5805400 0 5805400 5805400 0 5805400 0 0 0 3581 244 3674 9429 14803 14803 1 EQQHVMEELFQSSFR QSPMLLELMTEVLCREQQHVMEELFQSSFR EQQHVMEELFQSSFRRIARRGSCVTQVGLL R E Q F R R 0 1 0 0 0 3 3 0 1 0 1 0 1 2 0 2 0 0 0 1 0 0 15 0 1893.8679 P78527 P78527 1769 1783 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 5.6405E-05 67.846 1 1 0.64623 0.62635 81.628 2 Median 1.0476 1.1156 NaN 1 0 Median 0.39863 0.35168 NaN 1 0 Median 26851000 11761000 15089000 24396000 10156000 14240000 2454800 1605700 849120 3582 1665 3675;3676 9430;9431 14804;14805 14804 1447 2 EQQIVIQSSGGLSK NGIVHVSAKDKGTGREQQIVIQSSGGLSKD REQQIVIQSSGGLSKDDIENMVKNAEKYAE R E Q S K D 0 0 0 0 0 3 1 2 0 2 1 1 0 0 0 3 0 0 0 1 0 0 14 0 1472.7835 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z4T3;H0Y8S0 B7Z4V2 528 541 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 2.928E-09 138.45 2 2 1.9506 1.8724 44.76 4 Median 2.3981 2.6892 3.6499 2 0 Median 1.561 1.2475 9.8769 2 0 Median 239630000 76027000 163600000 214300000 65925000 148380000 25326000 10102000 15224000 3583 1092 3677 9432;9433;9434;9435 14806;14807;14808;14809;14810;14811;14812 14807 7 EQQLLSTLK SQMAEKQLEESVSEKEQQLLSTLKCQDEEL ESVSEKEQQLLSTLKCQDEELEKMREVCEQ K E Q L K C 0 0 0 0 0 2 1 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 9 0 1058.5972 Q59HG1;O95239;B3KNC0 Q59HG1 959 967 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 2.778E-08 147.51 1 2 1.9065 1.5412 9.8501 3 Median 1.1446 1.3048 NaN 1 0 Median 1.919 1.5474 0.56185 2 0 Median 196910000 86925000 109980000 151360000 70454000 80909000 45546000 16471000 29076000 3584 1803 3678 9436;9437;9438 14813;14814;14815;14816;14817;14818 14814 6 EQQLPVNEETLFQK FEAEEKLAEWVLTQREQQLPVNEETLFQKA REQQLPVNEETLFQKATKIGRSLEGGFKIS R E Q Q K A 0 0 1 0 0 3 3 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 14 0 1701.8574 Q7Z3K3;B4DSK8 Q7Z3K3 1040 1053 POGZ Pogo transposable element with ZNF domain yes no 2 7.1736E-10 122.7 2 1 0.77337 0.79519 12.775 3 Median 0.77096 0.78588 1.6661 2 0 Median 1.2225 0.97959 NaN 1 0 Median 39047000 21138000 17909000 30638000 17308000 13330000 8409000 3829700 4579300 3585 1874 3679 9439;9440;9441 14819;14820;14821;14822;14823 14821 5 EQSILELGSLLAK KRDIQENDEEAVQVKEQSILELGSLLAKTG VKEQSILELGSLLAKTGQAAELGGLLKYVR K E Q A K T 1 0 0 0 0 1 2 1 0 1 4 1 0 0 0 2 0 0 0 0 0 0 13 0 1399.7922 O00231;J3QRY4;B4DTS5 O00231 47 59 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.00076991 79.693 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8260800 8260800 0 8260800 8260800 0 0 0 0 3586 1360 3680 9442;9443 14824;14825 14824 2 EQSQPCADNAVLSSGLTAAR AKEAMEHPYFYPVVKEQSQPCADNAVLSSG CADNAVLSSGLTAAR_______________ K E Q A R - 4 1 1 1 1 2 1 1 0 0 2 0 0 0 1 3 1 0 0 1 0 0 20 0 2073.9749 P19784;H3BV19;H3BSA1 P19784 331 350 CSNK2A2 Casein kinase II subunit alpha yes no 2 0.004018 30.483 1 0.47775 0.48301 NaN 1 Median 0.47775 0.48301 NaN 1 0 Median NaN NaN NaN 0 0 Median 9755700 3712700 6043000 9755700 3712700 6043000 0 0 0 3587 1501 3681 9444 14826 14826 1 EQSSEAAETGVSENEENPVR NVNSELNPSTGNRSREQSSEAAETGVSENE AAETGVSENEENPVRIISVTPVKNIDPVKN R E Q V R I 2 1 2 0 0 1 6 1 0 0 0 0 0 0 1 3 1 0 0 2 0 0 20 0 2160.9407 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1184 1203 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.019979 34.179 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3094900 3094900 0 3094900 3094900 0 0 0 0 3588 1270 3682 9445;9446 14827;14828 14827 2 EQSVQEIPVSR SFYKVILGAHNEKVREQSVQEIPVSRLFRE EKVREQSVQEIPVSRLFREPSQADIALLKL R E Q S R L 0 1 0 0 0 2 2 0 0 1 0 0 0 0 1 2 0 0 0 2 0 0 11 0 1270.6517 CON__P06868 CON__P06868 648 658 yes yes 2 8.0266E-08 107.24 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27998000 27998000 0 27998000 27998000 0 0 0 0 + 3589 1157 3683 9447;9448 14829;14830 14830 2 EQTEGEYSSLEHESAR GYMTRHNNLDLVIIREQTEGEYSSLEHESA QTEGEYSSLEHESARGVIECLKIVTRAKSQ R E Q A R G 1 1 0 0 0 1 5 1 1 0 1 0 0 0 0 3 1 0 1 0 0 0 16 0 1850.7919 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 165 180 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2;3 1.4404E-07 102.66 6 1.4099 1.4243 1.188 2 Median 1.4099 1.4243 1.188 2 0 Median NaN NaN NaN 0 0 Median 36808000 15576000 21232000 36808000 15576000 21232000 0 0 0 3590 439 3684 9449;9450;9451;9452;9453;9454 14831;14832;14833;14834;14835;14836 14835 6 EQTEQILR RTFNCGVGAVLVVSKEQTEQILRGIQQHKE AVLVVSKEQTEQILRGIQQHKEEAWVIGSV K E Q L R G 0 1 0 0 0 2 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 1015.5298 Q3B7A7;Q59HH3;P22102;B4DJ93;A0A140TA71 Q3B7A7 744 751 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 1.8515E-05 127.84 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19366000 0 19366000 19366000 0 19366000 0 0 0 3591 1507 3685 9455;9456 14837;14838 14837 2 EQTLAQIDFMQK EEELQRNLLELEVQKEQTLAQIDFMQKQRN VQKEQTLAQIDFMQKQRNRTEELLDQLSLS K E Q Q K Q 1 0 0 1 0 3 1 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 12 0 1450.7126 Q8NG31;H0YCZ2 Q8NG31 2107 2118 CASC5 Protein CASC5 yes no 2 0.00064117 70.977 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14091000 5226000 8865100 14091000 5226000 8865100 0 0 0 3592 1928 3686 9457;9458 14839;14840 14839 1761 2 EQTLSPTITSGLHNIAR DDASKRLEFLYDKLREQTLSPTITSGLHNI TLSPTITSGLHNIARSIETRNYSEGLTMHT R E Q A R S 1 1 1 0 0 1 1 1 1 2 2 0 0 0 1 2 3 0 0 0 0 0 17 0 1836.9694 H7BXG7;A0A1S5UZ19;A0A024RDH6;A0A024RDD3;D6REX3;O94979;H0Y8W8 H7BXG7 908 924 SEC31A;SEC31L1 Protein transport protein Sec31A yes no 3 0.0019092 48.547 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4636200 0 4636200 4636200 0 4636200 0 0 0 3593 384 3687 9459 14841 14841 1 EQVANSAFVER KETQKSIYYITGESKEQVANSAFVERVRKR GESKEQVANSAFVERVRKRGFEVVYMTEPI K E Q E R V 2 1 1 0 0 1 2 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1248.6099 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF7 B4DMA2 454 464 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 2.8749E-12 137.95 2 2 1.6188 1.6148 41.183 4 Median 1.9726 2.3008 1.9585 2 0 Median 1.3251 1.1283 2.5915 2 0 Median 652030000 218620000 433420000 603120000 197800000 405320000 48915000 20819000 28097000 3594 379 3688 9460;9461;9462;9463 14842;14843;14844;14845;14846;14847;14848 14845 7 EQVEPTPEDEDDDIELR QSQVQKLTEENTTLREQVEPTPEDEDDDIE VEPTPEDEDDDIELRGAAAAAAPPPPIEEE R E Q L R G 0 1 0 4 0 1 5 0 0 1 1 0 0 0 2 0 1 0 0 1 0 0 17 0 2027.8807 A0A087WZG9;B4DSP0;A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7 A0A087WZG9 80 96 PEG10 Retrotransposon-derived protein PEG10 yes no 2 3.6217E-05 80.469 2 1.1564 1.1535 NaN 1 Median 1.1564 1.1535 NaN 1 0 Median NaN NaN NaN 0 0 Median 12842000 4749900 8092400 12842000 4749900 8092400 0 0 0 3595 412 3689 9464;9465 14849;14850;14851;14852 14849 4 EQVEVVEFHSNK ILAAAVPPSSLKNNREQVEVVEFHSNKKRK NNREQVEVVEFHSNKKRKLTPDHNKNTKQA R E Q N K K 0 0 1 0 0 1 3 0 1 0 0 1 0 1 0 1 0 0 0 3 0 0 12 0 1443.6994 Q8NDD1;Q5TBH9;Q5TBI2;B4E0F7 Q8NDD1 126 137 C1orf131 Uncharacterized protein C1orf131 yes no 2;3 0.0034841 62.466 1 2 1.2675 1.1439 25.864 2 Median 1.3344 1.3734 NaN 1 0 Median 1.2039 0.95268 NaN 1 0 Median 32832000 11055000 21777000 25229000 9057200 16172000 7603200 1998200 5605000 3596 1925 3690 9466;9467;9468 14853;14854;14855;14856 14854 4 EQVHQGGVELQQLEAGLQEAGEEDTR ______________________________ QLEAGLQEAGEEDTRLKASLLQLTRELEEL K E Q T R L 2 1 0 1 0 5 6 4 1 0 3 0 0 0 0 0 1 0 0 2 0 0 26 0 2849.3428 B4E086;K7EJH0;K7EMX1;K7EJV2;K7ESQ2;Q8NBT2 B4E086 14 39 SPC24 Kinetochore protein Spc24 yes no 3 1.2775E-09 51.619 2 2 0.95989 0.96266 14.664 4 Median 0.90432 0.96266 11.635 2 0 Median 1.0891 0.90817 21.812 2 0 Median 78263000 48078000 30185000 60726000 39040000 21687000 17537000 9038600 8498400 3597 1061 3691 9469;9470;9471;9472 14857;14858;14859;14860;14861;14862;14863;14864 14857 8 EQVLEPMLNGTDK EITELPVRTWTQVYKEQVLEPMLNGTDKTP YKEQVLEPMLNGTDKTPALISDYKEYHTDT K E Q D K T 0 0 1 1 0 1 2 1 0 0 2 1 1 0 1 0 1 0 0 1 0 0 13 0 1472.7181 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 930 942 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 2.7767E-06 105.46 3 0.64843 0.63612 19.118 3 Median 0.64843 0.63612 19.118 3 0 Median NaN NaN NaN 0 0 Median 68913000 41270000 27643000 68913000 41270000 27643000 0 0 0 3598 1679 3692 9473;9474;9475 14865;14866;14867 14866 1482 3 EQVLEPMLNGTEK EISELPVRTWTQTYKEQVLEPMLNGTEKTP YKEQVLEPMLNGTEKTPPLITDYREYHTDT K E Q E K T 0 0 1 0 0 1 3 1 0 0 2 1 1 0 1 0 1 0 0 1 0 0 13 0 1486.7337 P11388 P11388 937 949 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.167E-14 135.15 3 8 1.0325 1.1337 15.351 11 Median 0.9791 1.149 2.3893 3 0 Median 1.1902 0.95901 15.425 8 0 Median 1123000000 556450000 566510000 950580000 474860000 475720000 172380000 81586000 90794000 3599 1471 3693;3694 9476;9477;9478;9479;9480;9481;9482;9483;9484;9485;9486 14868;14869;14870;14871;14872;14873;14874;14875;14876;14877;14878;14879;14880;14881;14882;14883;14884;14885;14886;14887;14888;14889;14890;14891;14892;14893;14894;14895 14877 1194 28 EQVLQPVSAELLELDIR RDSREEVERRKRAAREQVLQPVSAELLELD VLQPVSAELLELDIREVYQPGSVLDFPRRP R E Q I R E 1 1 0 1 0 2 3 0 0 1 4 0 0 0 1 1 0 0 0 2 0 0 17 0 1951.0626 Q0EFC6;B4DYK6;A0A024RCR2;P36915;A2AB27 Q0EFC6 87 103 HSR1;GNL1 Guanine nucleotide-binding protein-like 1 yes no 2 1.2205E-08 93.011 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4005400 0 4005400 4005400 0 4005400 0 0 0 3600 366 3695 9487 14896 14896 1 EQVNDLFSR DNERLSKVEKARQLREQVNDLFSRKFGEAI KARQLREQVNDLFSRKFGEAIGMGFPVKVP R E Q S R K 0 1 1 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 1106.5356 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9;B4DM07;A0A087WW90;A0A0D9SF80;A0A0A0MSY2;Q86UP8;Q6EKJ0 X5D2J9 829 837 GTF2I;GTF2IRD2B;GTF2IRD2 General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B yes no 2 0.0014178 85.67 2 1 1.0588 1.1341 11.178 3 Plateau 1.0497 1.1182 4.4254 2 0 Median 1.0842 0.92856 NaN 1 0 Median 53835000 24366000 29469000 51095000 23011000 28084000 2740400 1354900 1385600 3601 789 3696 9488;9489;9490 14897;14898;14899 14898 3 EQVPSGAELER DQIGNMTSSQRRSKKEQVPSGAELERQQIL RSKKEQVPSGAELERQQILQEMRKRTPLHN K E Q E R Q 1 1 0 0 0 1 3 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 11 0 1213.5939 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2 A0A1P7ZIM8 1071 1081 LMO7 LIM domain only protein 7 yes no 2 0.0029048 70.1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11340000 0 11340000 11340000 0 11340000 0 0 0 3602 640 3697 9491 14900 14900 1 EQVSPLETTLEK STEVQSLYREIKDAKEQVSPLETTLEKFQQ DAKEQVSPLETTLEKFQQEKEELINKKNTS K E Q E K F 0 0 0 0 0 1 3 0 0 0 2 1 0 0 1 1 2 0 0 1 0 0 12 0 1372.7086 Q92878 Q92878 910 921 RAD50 DNA repair protein RAD50 yes yes 2 0.0011759 81.017 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8754900 0 8754900 8754900 0 8754900 0 0 0 3603 1953 3698 9492 14901 14901 1 EQWANLEQLSAIR HFGSEKIRERIIYIREQWANLEQLSAIRKK IREQWANLEQLSAIRKKRLEEASLLHQFQA R E Q I R K 2 1 1 0 0 2 2 0 0 1 2 0 0 0 0 1 0 1 0 0 0 0 13 0 1556.7947 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 638 650 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 8.427E-06 99.752 1 1 3.1648 2.6432 NaN 1 Median NaN NaN NaN 0 0 Median 3.1648 2.6432 NaN 1 0 Median 9704500 723100 8981400 6463700 0 6463700 3240800 723100 2517700 3604 415 3699 9493;9494 14902;14903 14902 2 EQWIQDAEECDR RAITSLRANGVEINREQWIQDAEECDRAGS INREQWIQDAEECDRAGSVATCQAVMRAVI R E Q D R A 1 1 0 2 1 2 3 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 12 0 1577.6416 O94906 O94906 504 515 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00044103 72.434 3 2 0.63819 0.61477 16.414 4 Median 0.62321 0.62957 17.007 2 0 Median 0.667 0.58201 21.386 2 0 Median 23689000 14397000 9292400 18521000 11522000 6999600 5168000 2875200 2292800 3605 1418 3700 9495;9496;9497;9498;9499 14904;14905;14906;14907;14908 14906 5 EQYLELVSAALR LLSHHRRALRLQVSREQYLELVSAALRRPG VSREQYLELVSAALRRPGPSLVLYMVDLLD R E Q L R R 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 1 1 0 0 12 0 1390.7456 B3KY51;Q8NC60 B3KY51 199 210 NOA1 Nitric oxide-associated protein 1 yes no 2 0.00024423 83 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3606 956 3701 9500 14909 14909 1 EQYSDAPEEIR AKRRALSSSVIRELKEQYSDAPEEIRDARH RELKEQYSDAPEEIRDARHPHVTRQSQEDQ K E Q I R D 1 1 0 1 0 1 3 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1335.5943 Q8NEJ9;H0YJ17 Q8NEJ9 211 221 NGDN Neuroguidin yes no 2 0.00038376 82.749 2 1 0.8273 0.88274 9.3997 3 Plateau 0.8193 0.87047 3.9745 2 0 Median 0.90713 0.74522 NaN 1 0 Median 83094000 44827000 38266000 74429000 40306000 34123000 8664400 4521200 4143200 3607 1927 3702 9501;9502;9503 14910;14911;14912;14913;14914;14915;14916 14914 7 EQYSDAPEEIRDAR AKRRALSSSVIRELKEQYSDAPEEIRDARH KEQYSDAPEEIRDARHPHVTRQSQEDQHRI K E Q A R H 2 2 0 2 0 1 3 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 14 1 1677.7594 Q8NEJ9;H0YJ17 Q8NEJ9 211 224 NGDN Neuroguidin yes no 3 0.00042746 44.457 1 2 0.92151 0.80877 4.6405 2 Median NaN NaN NaN 0 0 Median 0.92151 0.80877 4.6405 2 0 Median 25405000 17771000 7633500 10390000 10390000 0 15014000 7381000 7633500 3608 1927 3703 9504;9505;9506 14917;14918;14919;14920;14921 14919 5 ERDSELSDTDSGCCLGQSESDK QLLVRQSLVLPHSTKERDSELSDTDSGCCL DTDSGCCLGQSESDKSSTHGEAAAETDSRP K E R D K S 0 1 0 4 2 1 3 2 0 0 2 1 0 0 0 5 1 0 0 0 0 0 22 1 2473.9809 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 98 119 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.00011416 56.72 1 1 1.2406 1.0702 NaN 1 Median NaN NaN NaN 0 0 Median 1.2406 1.0702 NaN 1 0 Median 2634800 1277900 1356900 0 0 0 2634800 1277900 1356900 3609 406 3704 9507;9508 14922;14923 14922 2 ERFAGVDIR TLQYKLLEPVLLLGKERFAGVDIRVRVKGG VLLLGKERFAGVDIRVRVKGGGHVAQIYAI K E R I R V 1 2 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 9 1 1061.5618 P62249;M0R210;M0R3H0;A0A087WZ27;M0R1M5;M0QX76;Q6IPX4;B4DP32 P62249 61 69 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 0.0083576 83.948 1 0.94494 1.0537 NaN 1 Median 0.94494 1.0537 NaN 1 0 Median NaN NaN NaN 0 0 Median 25331000 11751000 13580000 25331000 11751000 13580000 0 0 0 3610 1636 3705 9509 14924;14925 14925 2 ERIDFLPHYDTLVK YLLQSVNQLLLTATKERIDFLPHYDTLVKS KERIDFLPHYDTLVKSGMYEYYASEGQNPL K E R V K S 0 1 0 2 0 0 1 0 1 1 2 1 0 1 1 0 1 0 1 1 0 0 14 1 1744.9148 A6NHR9 A6NHR9 113 126 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.00079625 51.643 1 1.292 1.0801 NaN 1 Median NaN NaN NaN 0 0 Median 1.292 1.0801 NaN 1 0 Median 3451900 1288800 2163200 0 0 0 3451900 1288800 2163200 3611 684 3706 9510 14926;14927 14927 2 ERLEDLNFPEIK RKLRDREIQLEISGKERLEDLNFPEIKRRK SGKERLEDLNFPEIKRRKMADRKDEDRKQF K E R I K R 0 1 1 1 0 0 3 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 12 1 1501.7777 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7;B4DY21 Q9Y3T9 638 649 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.0017447 71.153 2 0.96514 1.1207 1.9368 2 Median 0.96514 1.1207 1.9368 2 0 Median NaN NaN NaN 0 0 Median 67250000 33431000 33819000 67250000 33431000 33819000 0 0 0 3612 2139 3707 9511;9512 14928;14929;14930;14931 14929 4 ERLEQQVPVNQVFGQDEMIDVIGVTK QVNGGTVAEKLDWARERLEQQVPVNQVFGQ VFGQDEMIDVIGVTKGKGYKGVTSRWHTKK R E R T K G 0 1 1 2 0 4 3 2 0 2 1 1 1 1 1 0 1 0 0 5 0 0 26 1 2970.5121 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;H7C3M2;B5MCW2;B3KS36 P39023 199 224 RPL3;rpl3 60S ribosomal protein L3 no no 3 6.9072E-15 86.732 2 3 1.1989 1.1341 36.544 5 Median 1.1943 1.4371 1.0804 2 0 Median 1.2422 1.0974 36.952 3 0 Median 1196100000 564560000 631540000 985250000 452060000 533190000 210850000 112500000 98351000 3613 1554;936 3708;3709 9513;9514;9515;9516;9517 14932;14933;14934;14935;14936;14937;14938 14934 764 7 ERLPTTAQQEDPEK CHQPDLAGLEALRQRERLPTTAQQEDPEKI RERLPTTAQQEDPEKIQVQLCFKTCSPESQ R E R E K I 1 1 0 1 0 2 3 0 0 0 1 1 0 0 2 0 2 0 0 0 0 0 14 1 1640.8006 Q4VC44;I3L188;J3KNW1;B3KPY2;B3KP60;I3L1A7;I3L287 Q4VC44 672 685 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2;3 6.6147E-29 169.62 2 2 1.0993 1.0694 9.2357 4 Median 0.90039 1.0299 9.1644 2 0 Median 1.3334 1.1185 10.186 2 0 Median 51184000 26951000 24233000 44055000 23621000 20435000 7128800 3330600 3798200 3614 1781 3710 9518;9519;9520;9521 14939;14940;14941;14942;14943;14944;14945 14940 7 ERNGLSLAALK PPVSELITKAVAASKERNGLSLAALKKALA AASKERNGLSLAALKKALAAGGYDVEKNNS K E R L K K 2 1 1 0 0 0 1 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 11 1 1170.6721 P16401 P16401 56 66 HIST1H1B Histone H1.5 yes yes 2;3 0.0018763 88.596 4 2 0.59731 0.71212 37.434 6 Median 0.61945 0.7257 3.8803 4 0 Median 0.41644 0.35594 8.1066 2 0 Median 634290000 385070000 249220000 609750000 368130000 241620000 24542000 16940000 7601200 3615 1489 3711 9522;9523;9524;9525;9526;9527 14946;14947;14948;14949;14950;14951;14952;14953;14954 14948 9 ERNGLSLAALKK PPVSELITKAVAASKERNGLSLAALKKALA ASKERNGLSLAALKKALAAGGYDVEKNNSR K E R K K A 2 1 1 0 0 0 1 1 0 0 3 2 0 0 0 1 0 0 0 0 0 0 12 2 1298.767 P16401 P16401 56 67 HIST1H1B Histone H1.5 yes yes 3 0.021445 38.178 1 0.4819 0.46915 NaN 1 Median NaN NaN NaN 0 0 Median 0.4819 0.46915 NaN 1 0 Median 7531900 5157700 2374100 0 0 0 7531900 5157700 2374100 3616 1489 3712 9528 14955 14955 1 ERPEGETGDLGK GERGEEKPLDGQEHRERPEGETGDLGKRED EHRERPEGETGDLGKREDVKGDRELRPGPR R E R G K R 0 1 0 1 0 0 3 3 0 0 1 1 0 0 1 0 1 0 0 0 0 0 12 1 1286.6103 Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4 Q12873 1663 1674 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.0009295 91.549 2 0.40513 0.44014 3.4115 2 Median 0.40513 0.44014 3.4115 2 0 Median NaN NaN NaN 0 0 Median 19692000 13295000 6396900 19692000 13295000 6396900 0 0 0 3617 1701 3713 9529;9530 14956;14957;14958;14959 14957 4 ERPGEQSEVAQLIQQTLEQER VLRNTKGRVRFMIGRERPGEQSEVAQLIQQ SEVAQLIQQTLEQERWQREMMEQRYAQYGE R E R E R W 1 2 0 0 0 5 5 1 0 1 2 0 0 0 1 1 1 0 0 1 0 0 21 1 2467.2303 D3DTX6;Q96SB3;B3KNT0;Q96B17 D3DTX6 583 603 PPP1R9B Neurabin-2 yes no 3 8.2479E-06 55.734 2 1.5724 1.3568 NaN 1 Median NaN NaN NaN 0 0 Median 1.5724 1.3568 NaN 1 0 Median 7108000 1569800 5538200 0 0 0 7108000 1569800 5538200 3618 1190 3714 9531;9532 14960;14961 14961 2 ERPIILDPADPTLNVAEGYR HNAIIEDCVRKQLKKERPIILDPADPTLNV LDPADPTLNVAEGYRWDIVAQRASQCLKQD K E R Y R W 2 2 1 2 0 0 2 1 0 2 2 0 0 0 3 0 1 0 1 1 0 0 20 1 2238.1644 B3KN79;Q15646 B3KN79 299 318 OASL 2-5-oligoadenylate synthase-like protein yes no 3 0.001379 32.227 1 1.4142 1.2801 NaN 1 Median NaN NaN NaN 0 0 Median 1.4142 1.2801 NaN 1 0 Median 4566200 1900900 2665300 0 0 0 4566200 1900900 2665300 3619 911 3715 9533 14962 14962 1 ERPPEEVAAR PTPALSEEASSSSIRERPPEEVAARLAQQE SSSIRERPPEEVAARLAQQEKQEQVKIESL R E R A R L 2 2 0 0 0 0 3 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 10 1 1152.5887 B4DS66;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;Q05DN3 Q16891 196 205 IMMT MICOS complex subunit MIC60 no no 2;3 7.9971E-30 183.72 3 0.90859 1.066 9.9966 3 Median 0.90859 1.066 9.9966 3 0 Median NaN NaN NaN 0 0 Median 207400000 108330000 99071000 207400000 108330000 99071000 0 0 0 3620 1774;1029;1128 3716 9534;9535;9536 14963;14964;14965;14966 14965 4 ERPPFIPEGVVAR LNRLHLAIPTRRDDKERPPFIPEGVVARRK DKERPPFIPEGVVARRKRMETEESRKKRER K E R A R R 1 2 0 0 0 0 2 1 0 1 0 0 0 1 3 0 0 0 0 2 0 0 13 1 1465.8041 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 370 382 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2;3 3.6262E-05 100.55 4 4 1.3381 1.3492 8.5401 8 Median 1.1928 1.3492 7.2635 4 0 Median 1.5286 1.3239 10.595 4 0 Median 798820000 346250000 452580000 654490000 290070000 364420000 144330000 56177000 88157000 3621 1183 3717 9537;9538;9539;9540;9541;9542;9543;9544 14967;14968;14969;14970;14971;14972;14973;14974;14975;14976;14977;14978 14971 12 ERPTPSLNNNCTTSEDSLVLYNR TKVEATKNETSAPFKERPTPSLNNNCTTSE NNCTTSEDSLVLYNRVAVQGDVVRELKAKK K E R N R V 0 2 4 1 1 0 2 0 0 0 3 0 0 0 2 3 3 0 1 1 0 0 23 1 2679.2559 P07814;V9GYZ6;Q3KQZ8;H6WCP5 P07814 734 756 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 1.7295E-09 75.797 2 2 1.2589 1.115 4.7032 2 Median NaN NaN NaN 0 0 Median 1.2589 1.115 4.7032 2 0 Median 19346000 4329900 15016000 9462400 0 9462400 9883200 4329900 5553400 3622 1454 3718 9545;9546;9547;9548 14979;14980;14981;14982;14983;14984;14985 14980 7 ERTEEPMETEPK EPPEGEEKVEKAEVKERTEEPMETEPKGAA EVKERTEEPMETEPKGAADVEKVEEKSAID K E R P K G 0 1 0 0 0 0 5 0 0 0 0 1 1 0 2 0 2 0 0 0 0 0 12 1 1474.661 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1618 1629 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 7.9463E-06 108.35 1 1 1.3399 1.3581 40.859 2 Median 0.84749 1.0173 NaN 1 0 Median 2.1184 1.813 NaN 1 0 Median 65561000 35125000 30436000 62806000 34170000 28637000 2754800 954900 1799900 3623 515 3719;3720 9549;9550 14986;14987 14986 369 2 ERTNEGVIEFR FMRQAGEVTYADAHKERTNEGVIEFRSYSD DAHKERTNEGVIEFRSYSDMKRALDKLDGT K E R F R S 0 2 1 0 0 0 3 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 11 1 1348.6735 V9HVZ0;A8K588;Q13247;Q59GY3 V9HVZ0 144 154 HEL-S-91;SRSF6 Serine/arginine-rich splicing factor 6 yes no 2;3 0.00085259 94.616 3 1 1.3425 1.5149 38.271 4 Median 1.3693 1.5464 4.1336 3 0 Median 0.79828 0.72155 NaN 1 0 Median 245650000 115510000 130140000 242620000 113780000 128840000 3029300 1729700 1299600 3624 748 3721 9551;9552;9553;9554 14988;14989;14990;14991 14989 3 ERVEAGDVIYIEANSGAVK KQLKLDPSIFESLQKERVEAGDVIYIEANS AGDVIYIEANSGAVKRQGRCDTYATEFDLE K E R V K R 3 1 1 1 0 0 3 2 0 2 0 1 0 0 0 1 0 0 1 3 0 0 19 1 2019.0273 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4I3 B5BUB1 183 201 RUVBL1 RuvB-like 1 yes no 3 0.0037689 28.325 2 0.98 0.8278 7.7727 2 Median NaN NaN NaN 0 0 Median 0.98 0.8278 7.7727 2 0 Median 17743000 9205800 8537000 0 0 0 17743000 9205800 8537000 3625 1076 3722 9555;9556 14992;14993 14993 2 ERVMEIVDADEK KAASITSEVFNKFFKERVMEIVDADEKVRH FFKERVMEIVDADEKVRHSKLAESVEKAIE K E R E K V 1 1 0 2 0 0 3 0 0 1 0 1 1 0 0 0 0 0 0 2 0 0 12 1 1432.6868 Q9Y5B9;Q0VGA3 Q9Y5B9 200 211 SUPT16H FACT complex subunit SPT16 yes no 2 1.6029E-05 103.91 3 1 0.84133 1.0109 30.447 4 Median 0.88147 1.0598 10.941 3 0 Median 0.71293 0.59793 NaN 1 0 Median 230840000 116660000 114170000 224490000 113150000 111350000 6344700 3516000 2828700 3626 2148 3723 9557;9558;9559;9560 14994;14995;14996;14997;14998 14995 1989 5 ERYPTFIDALR LKDNKPNYKLDHIIKERYPTFIDALRDLDD HIIKERYPTFIDALRDLDDALSMCFLFSTF K E R L R D 1 2 0 1 0 0 1 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 11 1 1379.7197 B5MCF9;B2RDF2;O00541 B5MCF9 122 132 PES1 Pescadillo homolog yes no 2;3 0.00054661 69.451 6 1 0.9697 1.2265 14.111 4 Linear 0.97671 1.1055 0.96502 3 0 Plateau 0.944 0.82892 NaN 1 0 Median 87000000 42047000 44953000 82660000 39990000 42671000 4339700 2057400 2282300 3627 886 3724 9561;9562;9563;9564;9565;9566;9567 14999;15000;15001;15002;15003;15004;15005;15006;15007;15008 15005 10 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR AATVASATGDSASERESAAPAAAPTAEAPP VTRPEPQALPSPAIRAPLPDLYPFGTMRGG R E S I R A 9 2 0 0 0 1 3 0 0 1 1 0 0 0 9 3 2 0 0 2 0 0 33 1 3245.7044 Q59F66;Q92841 Q59F66 38 70 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3 1.2333E-12 56.366 2 2 1.2483 1.2141 26.422 4 Median 1.3897 1.5242 6.651 2 0 Median 1.0918 0.97281 5.8234 2 0 Median 54711000 23278000 31434000 44696000 18830000 25866000 10015000 4447800 5567200 3628 1801 3725 9568;9569;9570;9571 15009;15010;15011;15012;15013;15014;15015;15016;15017;15018;15019;15020;15021;15022 15012 14 ESADGLQGETQLLVSR YCRKSGLQTDYATEKESADGLQGETQLLVS SADGLQGETQLLVSRKSRPKSGGSGHAVAE K E S S R K 1 1 0 1 0 2 2 2 0 0 3 0 0 0 0 2 1 0 0 1 0 0 16 0 1701.8533 P46013 P46013 275 290 MKI67 Antigen KI-67 yes yes 2 5.7823E-95 221.86 2 2 1.8132 2.0691 25.117 3 Median 1.7499 1.9993 4.8564 2 0 Median 3.5242 3.0763 NaN 1 0 Median 369230000 116740000 252490000 271380000 95956000 175420000 97850000 20787000 77063000 3629 1569 3726 9572;9573;9574;9575 15023;15024;15025;15026;15027;15028;15029;15030;15031 15026 9 ESADPLGAWLQDAR QRELEQLGRQLRYYRESADPLGAWLQDARR RESADPLGAWLQDARRRQEQIQAMPLADSQ R E S A R R 3 1 0 2 0 1 1 1 0 0 2 0 0 0 1 1 0 1 0 0 0 0 14 0 1527.7318 Q15149 Q15149 1351 1364 PLEC Plectin yes yes 2 0.001083 56.225 1 0.99078 1.0088 NaN 1 Median 0.99078 1.0088 NaN 1 0 Median NaN NaN NaN 0 0 Median 7080500 2752400 4328100 7080500 2752400 4328100 0 0 0 3630 1754 3727 9576 15032 15032 1 ESALASADLEEEIHQK AKKKHTNAEKKLADRESALASADLEEEIHQ SALASADLEEEIHQKQGQKRKNSQPGVKVA R E S Q K Q 3 0 0 1 0 1 4 0 1 1 2 1 0 0 0 2 0 0 0 0 0 0 16 0 1768.8479 P42696;A2A2V2 P42696 123 138 RBM34 RNA-binding protein 34 yes no 2 5.4106E-07 98.407 2 2 0.91443 0.90537 12.411 4 Linear 0.86739 0.86472 13.754 2 0 Median 0.91443 0.74004 5.525 2 0 Median 70354000 34860000 35494000 50748000 24664000 26084000 19605000 10196000 9409600 3631 1566 3728 9577;9578;9579;9580 15033;15034;15035;15036;15037;15038;15039;15040 15034 8 ESAQAIEDLAGFK AASVTGSRRRPRAPRESAQAIEDLAGFKDP PRESAQAIEDLAGFKDPAAGHTEESMTDDK R E S F K D 3 0 0 1 0 1 2 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1377.6776 P46013 P46013 2792 2804 MKI67 Antigen KI-67 yes yes 2 9.2996E-09 136.48 2 2 2.8476 2.7966 15.68 4 Median 2.1063 2.4473 1.9332 2 0 Median 3.8472 3.2054 2.3645 2 0 Median 570930000 184070000 386860000 480710000 165560000 315150000 90214000 18509000 71705000 3632 1569 3729 9581;9582;9583;9584 15041;15042;15043;15044;15045;15046;15047 15043 7 ESAQAIEDLAGFKDPAAGHTEESMTDDK AASVTGSRRRPRAPRESAQAIEDLAGFKDP DPAAGHTEESMTDDKTTKIPCKSSPELEDT R E S D K T 5 0 0 4 0 1 4 2 1 1 1 2 1 1 1 2 2 0 0 0 0 0 28 1 2962.3138 P46013 P46013 2792 2819 MKI67 Antigen KI-67 yes yes 3;4 2.8877E-06 43.936 1 1 3.3696 2.9053 NaN 1 Median NaN NaN NaN 0 0 Median 3.3696 2.9053 NaN 1 0 Median 15952000 858540 15093000 10469000 0 10469000 5482700 858540 4624200 3633 1569 3730;3731 9585;9586 15048;15049 15048 1334 2 ESCDQILDSYK DIINKHYMEVNSNEKESCDQILDSYKVVKK SNEKESCDQILDSYKVVKKRKKESSCKAKN K E S Y K V 0 0 0 2 1 1 1 0 0 1 1 1 0 0 0 2 0 0 1 0 0 0 11 0 1356.5867 Q562F6;B7Z7S9 Q562F6 971 981 SGOL2 Shugoshin-like 2 yes no 2 0.00038376 82.749 2 1.1474 1.1244 NaN 1 Median 1.1474 1.1244 NaN 1 0 Median NaN NaN NaN 0 0 Median 32520000 20559000 11961000 32520000 20559000 11961000 0 0 0 3634 1795 3732 9587;9588 15050;15051 15050 2 ESDLPSAILQTSGVSEFTK GRDRKKDKQHLKRKKESDLPSAILQTSGVS PSAILQTSGVSEFTKKRSKLVLPAPQISDA K E S T K K 1 0 0 1 0 1 2 1 0 1 2 1 0 1 1 4 2 0 0 1 0 0 19 0 2008.0001 B4DSH1;B3KY60;Q99459 B4DSH1 245 263 CDC5L Cell division cycle 5-like protein yes no 2 0.00026378 57.136 1 1 0.98748 0.77153 NaN 1 Median NaN NaN NaN 0 0 Median 0.98748 0.77153 NaN 1 0 Median 2220800 1075700 1145100 0 0 0 2220800 1075700 1145100 3635 957 3733 9589;9590 15052;15053;15054 15053 3 ESDVVQELLK MGLSQAPPVSWNGERESDVVQELLKYSSDK WNGERESDVVQELLKYSSDKAYGRKVLTWD R E S L K Y 0 0 0 1 0 1 2 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 10 0 1158.6132 A0A024R8V6;Q9P275;B3KMW2 A0A024R8V6 1022 1031 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 1.1229E-07 109.29 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37072000 0 37072000 37072000 0 37072000 0 0 0 3636 260 3734 9591;9592 15055;15056 15056 2 ESDWDGIIACHQGK VRLPPITKFAAEEARESDWDGIIACHQGKL RESDWDGIIACHQGKLSCSTWNYQKSTIGA R E S G K L 1 0 0 2 1 1 1 2 1 2 0 1 0 0 0 1 0 1 0 0 0 0 14 0 1614.7097 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 398 411 WDR36 WD repeat-containing protein 36 yes no 2;3 0.0024496 45.972 1 3 1.2427 0.98408 8.0662 4 Median 0.89094 0.94491 NaN 1 0 Median 1.36 1.0757 8.901 3 0 Plateau 26418000 12572000 13847000 16153000 7741200 8412000 10265000 4830500 5434500 3637 486 3735 9593;9594;9595;9596 15057;15058;15059;15060 15057 4 ESEDFIVEQYK RYLLFARQFKPKISKESEDFIVEQYKHLRQ KISKESEDFIVEQYKHLRQRDGSGVTKSSW K E S Y K H 0 0 0 1 0 1 3 0 0 1 0 1 0 1 0 1 0 0 1 1 0 0 11 0 1385.6351 Q14566;Q4ZG57;B4DRF6 Q14566 589 599 MCM6 DNA replication licensing factor MCM6 yes no 2 5.7494E-16 132.01 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12794000 1036400 11758000 11758000 0 11758000 1036400 1036400 0 3638 1734 3736 9597;9598;9599 15061;15062;15063 15061 3 ESEDKPEIEDVGSDEEEEK EEKEDKEEEKEKEEKESEDKPEIEDVGSDE KPEIEDVGSDEEEEKKDGDKKKKKKIKEKY K E S E K K 0 0 0 3 0 0 8 1 0 1 0 2 0 0 1 2 0 0 0 1 0 0 19 1 2191.9128 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322 K9JA46 251 269 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2;3 3.1349E-12 102.89 3 5.4545 6.3751 19.114 2 Median 5.4545 6.3751 19.114 2 0 Median NaN NaN NaN 0 0 Median 91799000 11418000 80381000 91799000 11418000 80381000 0 0 0 3639 1348 3737 9600;9601;9602 15064;15065;15066;15067;15068;15069 15067 6 ESEDKPEIEDVGSDEEEEKK EEKEDKEEEKEKEEKESEDKPEIEDVGSDE PEIEDVGSDEEEEKKDGDKKKKKKIKEKYI K E S K K D 0 0 0 3 0 0 8 1 0 1 0 3 0 0 1 2 0 0 0 1 0 0 20 2 2320.0078 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322 K9JA46 251 270 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 5.9786E-14 98.175 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8724300 0 8724300 8724300 0 8724300 0 0 0 3640 1348 3738 9603;9604 15070;15071;15072 15070 3 ESEEAILADDDEPCK GSEKSSAASEEEEEKESEEAILADDDEPCK ESEEAILADDDEPCKKCGLPNHPELILLCD K E S C K K 2 0 0 3 1 0 4 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 15 0 1719.7145 Q96T23;H0YCN2;H0YEX0 Q96T23 881 895 RSF1 Remodeling and spacing factor 1 yes no 2 0.00044622 72.652 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5951100 3697900 2253200 5951100 3697900 2253200 0 0 0 3641 1991 3739 9605;9606;9607 15073;15074;15075 15073 3 ESEFDDEPK EEMDDQDKDKAKGRKESEFDDEPKFMSKVI KAKGRKESEFDDEPKFMSKVIGANKNQEEE K E S P K F 0 0 0 2 0 0 3 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 9 0 1094.4404 Q9Y2W1 Q9Y2W1 443 451 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 1.2126E-05 124.98 2 1 1.141 1.2868 11.884 3 Plateau 1.1289 1.2477 4.362 2 0 Median 1.294 1.0228 NaN 1 0 Median 105370000 50359000 55006000 99250000 47888000 51362000 6115200 2470800 3644400 3642 2128 3740 9608;9609;9610 15076;15077;15078;15079;15080;15081 15077 6 ESEGEEEDEDEDLSK KAVGPASILKEVEDKESEGEEEDEDEDLSK ESEGEEEDEDEDLSKYKLDEDEDEDDADLS K E S S K Y 0 0 0 3 0 0 7 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 15 0 1738.6541 O95218 O95218 152 166 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes yes 2 3.9078E-15 128.85 2 1 1.1634 1.1623 56.001 3 Median 1.2006 1.2258 7.5189 2 0 Median 0.57459 0.46673 NaN 1 0 Median 29072000 13186000 15886000 26365000 11717000 14648000 2706600 1469000 1237600 3643 1420 3741 9611;9612;9613 15082;15083;15084;15085;15086;15087;15088;15089 15084 8 ESEIIDFFLGASLK IKSLEEIYLFSLPIKESEIIDFFLGASLKD KESEIIDFFLGASLKDEVLKIMPVQKQTRA K E S L K D 1 0 0 1 0 0 2 1 0 2 2 1 0 2 0 2 0 0 0 0 0 0 14 0 1567.8134 P15880;Q8N5L9;Q6IPX5;Q3KQT6;Q8J014;E9PMM9;E9PQD7;I3L404;E9PPT0;Q8NI61;D3DU83;H3BNG3 P15880 90 103 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2 0.00010451 84.479 2 1.1209 1.2501 7.8558 2 Median 1.1209 1.2501 7.8558 2 0 Median NaN NaN NaN 0 0 Median 114250000 52427000 61819000 114250000 52427000 61819000 0 0 0 3644 1485 3742 9614;9615 15090;15091;15092 15092 3 ESEITDEDIDGILER LQMIRHGATHVFASKESEITDEDIDGILER ESEITDEDIDGILERGAKKTAEMNEKLSKM K E S E R G 0 1 0 3 0 0 4 1 0 3 1 0 0 0 0 1 1 0 0 0 0 0 15 0 1732.8003 O60264;B7ZAX9;B4DZC0 O60264 666 680 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 6.8231E-31 160.15 2 3 3.4073 3.4063 27.174 4 Median 2.3581 2.7176 0.11776 2 0 Median 5.0078 4.3477 2.6866 2 0 Median 483930000 126790000 357140000 342360000 105090000 237280000 141560000 21702000 119860000 3645 1391 3743 9616;9617;9618;9619;9620 15093;15094;15095;15096;15097;15098;15099 15094 7 ESELGDRPLQVGER GVGHRTVYLFDRREKESELGDRPLQVGERS KESELGDRPLQVGERSDYAGFRACVCQTLG K E S E R S 0 2 0 1 0 1 3 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 14 1 1583.7903 A6NHR9 A6NHR9 37 50 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 3.7925E-05 78.505 2 0.90811 1.0128 15.393 2 Median 0.90811 1.0128 15.393 2 0 Median NaN NaN NaN 0 0 Median 83707000 44859000 38848000 83707000 44859000 38848000 0 0 0 3646 684 3744 9621;9622 15100;15101;15102 15102 3 ESESEDSSDDEPLIK ADSSTTKKNQNSSKKESESEDSSDDEPLIK ESESEDSSDDEPLIKKLKKPPTDEELKETI K E S I K K 0 0 0 3 0 0 4 0 0 1 1 1 0 0 1 4 0 0 0 0 0 0 15 0 1678.7057 B4DNW3;H0Y993;P35659;B4DFG0 P35659 300 314 DEK Protein DEK no no 2 0.00021022 75.819 2 2.2097 2.2906 NaN 1 Median 2.2097 2.2906 NaN 1 0 Median NaN NaN NaN 0 0 Median 20858000 4596000 16262000 20858000 4596000 16262000 0 0 0 3647 1546;1018 3745 9623;9624 15103;15104 15104 2 ESESESDETPPAAPQLIK PQVVAEAAKTAKRKRESESESDETPPAAPQ SESDETPPAAPQLIKKEKKKSKKDKKAKAG R E S I K K 2 0 0 1 0 1 4 0 0 1 1 1 0 0 3 3 1 0 0 0 0 0 18 0 1926.9058 O60832 O60832 450 467 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 1.5705E-06 85.522 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3648 1398 3746 9625;9626;9627;9628 15105;15106;15107;15108 15108 4 ESFADVLPEAAALVK DVIQNCKRKNAIIFRESFADVLPEAAALVK ESFADVLPEAAALVKDPSVSKSVERIFKIW R E S V K D 4 0 0 1 0 0 2 0 0 0 2 1 0 1 1 1 0 0 0 2 0 0 15 0 1558.8243 Q5VT52 Q5VT52 98 112 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.0018082 46.706 2 1.3209 1.395 19.997 2 Median 1.3209 1.395 19.997 2 0 Median NaN NaN NaN 0 0 Median 7995100 2686200 5308900 7995100 2686200 5308900 0 0 0 3649 1830 3747 9629;9630 15109;15110 15109 2 ESFDGSVR FVKGLSEDTTEETLKESFDGSVRARIVTDR TTEETLKESFDGSVRARIVTDRETGSSKGF K E S V R A 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 2 0 0 0 1 0 0 8 0 895.40356 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 513 520 NCL Nucleolin yes no 2 0.0019394 104.37 2 1 1.0928 1.2902 51.148 3 Plateau 0.98549 1.0644 27.209 2 0 Median 0.55288 0.46839 NaN 1 0 Median 274120000 125490000 148630000 264760000 119600000 145160000 9353600 5888700 3464900 3650 151 3748 9631;9632;9633 15111;15112;15113;15114 15111 4 ESFETFINK EVCFQKNERFVNLMKESFETFINKRPNKPA FVNLMKESFETFINKRPNKPAELIAKHVDS K E S N K R 0 0 1 0 0 0 2 0 0 1 0 1 0 2 0 1 1 0 0 0 0 0 9 0 1113.5342 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 392 400 CUL4A Cullin-4A yes no 2 0.00017767 107.29 2 1 0.7452 0.75769 3.8684 3 Median 0.74307 0.76022 5.464 2 0 Median 0.93139 0.75769 NaN 1 0 Median 68211000 41413000 26798000 61126000 37611000 23514000 7085400 3801400 3284000 3651 1718 3749 9634;9635;9636 15115;15116;15117;15118;15119 15116 5 ESFLVTGSQDCTVK GHTHSVGTVCCSRLKESFLVTGSQDCTVKL KESFLVTGSQDCTVKLWPLPKALLSKNTAP K E S V K L 0 0 0 1 1 1 1 1 0 0 1 1 0 1 0 2 2 0 0 2 0 0 14 0 1569.7345 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 434 447 TBL3 Transducin beta-like protein 3 no no 2 3.5239E-22 149.96 2 2 0.97249 0.92918 3.8579 4 Median 0.80454 0.89411 2.0324 2 0 Median 1.183 0.95286 0.15136 2 0 Median 157530000 84181000 73348000 112160000 63473000 48687000 45369000 20708000 24661000 3652 1698;436 3750 9637;9638;9639;9640 15120;15121;15122;15123;15124;15125;15126;15127;15128 15122 9 ESFSLVQVQPGVDIIR MATHTLITGLEEYVRESFSLVQVQPGVDII SFSLVQVQPGVDIIRTNLEFLQEQFNSIAA R E S I R T 0 1 0 1 0 2 1 1 0 2 1 0 0 1 1 2 0 0 0 3 0 0 16 0 1785.9625 A0A0G2JL47;A0A024RCR6;A0A0G2JK23;P46379 A0A0G2JL47 815 830 BAT3;BAG6 Large proline-rich protein BAG6 yes no 2 1.9772E-06 93.839 1 2 1.5099 1.5158 33.622 3 Plateau 1.5099 1.5158 NaN 1 0 Median 1.0263 0.87836 16.618 2 0 Median 21723000 8745100 12978000 16065000 5787200 10278000 5658300 2957900 2700400 3653 368 3751 9641;9642;9643 15129;15130;15131 15129 3 ESGAINTSLFVLGK SEDNRRTGNKGLRLKESGAINTSLFVLGKV KESGAINTSLFVLGKVVDALNQGLPRVPYR K E S G K V 1 0 1 0 0 0 1 2 0 1 2 1 0 1 0 2 1 0 0 1 0 0 14 0 1434.7718 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 293 306 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 2.415E-09 131.82 2 2 1.1488 1.0682 19.714 4 Median 0.85759 0.91361 4.8826 2 0 Median 1.5847 1.2707 7.3326 2 0 Median 113920000 58859000 55057000 71973000 42426000 29548000 41943000 16433000 25510000 3654 1745 3752 9644;9645;9646;9647 15132;15133;15134;15135;15136;15137;15138;15139;15140;15141 15133 10 ESGMSSLYVFNPIFGK HFPHPPQCTLLVKDKESGMSSLYVFNPIFG SGMSSLYVFNPIFGKWSQVAPPVLKRPILQ K E S G K W 0 0 1 0 0 0 1 2 0 1 1 1 1 2 1 3 0 0 1 1 0 0 16 0 1774.86 Q8N766 Q8N766 595 610 EMC1 ER membrane protein complex subunit 1 yes yes 2 7.4544E-05 69.01 2 0.75649 0.77613 21.223 2 Median 0.75649 0.77613 21.223 2 0 Median NaN NaN NaN 0 0 Median 20446000 10595000 9850900 20446000 10595000 9850900 0 0 0 3655 1913 3753 9648;9649 15142;15143 15143 1746 2 ESGPSGIETELR GLVNNKYDTALNLLKESGPSGIETELRSLS LLKESGPSGIETELRSLSPDCGGSIEVMQS K E S L R S 0 1 0 0 0 0 3 2 0 1 1 0 0 0 1 2 1 0 0 0 0 0 12 0 1273.615 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 793 804 WDR36 WD repeat-containing protein 36 yes no 2 1.8229E-05 104.22 2 2 1.0668 1.0452 3.0857 4 Median 0.89429 1.0267 2.4475 2 0 Median 1.2634 1.0668 2.809 2 0 Median 358700000 188590000 170110000 313960000 169650000 144310000 44748000 18942000 25806000 3656 486 3754 9650;9651;9652;9653 15144;15145;15146;15147;15148;15149;15150;15151;15152 15148 9 ESGSTLDLSGSR ASASKEKETSAEKSKESGSTLDLSGSRETP KSKESGSTLDLSGSRETPSSILLGSNQGSV K E S S R E 0 1 0 1 0 0 1 2 0 0 2 0 0 0 0 4 1 0 0 0 0 0 12 0 1207.5681 A0A087WVZ6;H7C4X9;A0A087WYS3;Q9ULU4 A0A087WVZ6 1038 1049 ZMYND8 Protein kinase C-binding protein 1 no no 2 0.00018473 90.827 1 1 1.029 0.94481 40.901 2 Median 0.70169 0.70752 NaN 1 0 Median 1.509 1.2617 NaN 1 0 Median 21245000 11247000 9997500 17595000 9774900 7819700 3650200 1472400 2177800 3657 422;1317 3755 9654;9655 15153;15154;15155;15156 15155 4 ESHTAVVYTEK AWDIPITYGVLPPPRESHTAVVYTEKDNKK PPPRESHTAVVYTEKDNKKSKLVIYGGMSG R E S E K D 1 0 0 0 0 0 2 0 1 0 0 1 0 0 0 1 2 0 1 2 0 0 11 0 1262.6143 A6NEM2;P51610;Q05C05 A6NEM2 201 211 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 3.4796E-66 254.5 1 2 1.3263 1.0671 15.427 3 Median 0.79413 0.83888 NaN 1 0 Median 1.3713 1.0924 3.3233 2 0 Median 27167000 13839000 13328000 20073000 10695000 9377900 7093800 3144000 3949800 3658 680 3756 9656;9657;9658 15157;15158;15159;15160;15161;15162 15158 6 ESIFPVVR NQAVQFISALVDELKESIFPVVRILLQHIC ALVDELKESIFPVVRILLQHICAKVVDKSE K E S V R I 0 1 0 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 2 0 0 8 0 945.52837 P42695;G3V1A9;E9PKK4 P42695 347 354 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.034019 60.972 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3659 1565 3757 9659 15163 15163 1 ESIGNVQVLLEYHIAYLK PREDGMVPFVFVGTKESIGNVQVLLEYHIA GNVQVLLEYHIAYLKEVEQLRMERLQIDEQ K E S L K E 1 0 1 0 0 1 2 1 1 2 3 1 0 0 0 1 0 0 2 2 0 0 18 0 2088.1255 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 342 359 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 0.048676 13.6 1 1.1375 0.90783 NaN 1 Median NaN NaN NaN 0 0 Median 1.1375 0.90783 NaN 1 0 Median 6906900 3266600 3640200 0 0 0 6906900 3266600 3640200 3660 531 3758 9660 15164 15164 1 ESIGSELGNSFASNIR PETNFRDSSYPFANKESIGSELGNSFASNI SIGSELGNSFASNIRIKEEPLDDEYDKAMA K E S I R I 1 1 2 0 0 0 2 2 0 2 1 0 0 1 0 4 0 0 0 0 0 0 16 0 1679.8115 Q5VZL5 Q5VZL5 233 248 ZMYM4 Zinc finger MYM-type protein 4 yes yes 2 3.2541E-06 82.85 4 2 1.6866 1.4184 2.088 2 Median NaN NaN NaN 0 0 Median 1.6866 1.4184 2.088 2 0 Median 23996000 16986000 7009500 13730000 13730000 0 10266000 3256700 7009500 3661 1835 3759 9661;9662;9663;9664;9665;9666 15165;15166;15167;15168;15169;15170 15167 6 ESISENPTLDLPCSIGR TRKMIQKTAEPLLDKESISENPTLDLPCSI ISENPTLDLPCSIGRTEGTAHSSNTSDVDF K E S G R T 0 1 1 1 1 0 2 1 0 2 2 0 0 0 2 3 1 0 0 0 0 0 17 0 1886.9044 Q9Y483;Q96G26;B4DZG1 Q9Y483 425 441 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.015296 28.361 1 1.5859 1.5891 NaN 1 Median 1.5859 1.5891 NaN 1 0 Median NaN NaN NaN 0 0 Median 18369000 8139700 10229000 18369000 8139700 10229000 0 0 0 3662 2143 3760 9667 15171 15171 1 ESIVDVEGVVR HASKQMVKFAANINKESIVDVEGVVRKVNQ NINKESIVDVEGVVRKVNQKIGSCTQQDVE K E S V R K 0 1 0 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 0 4 0 0 11 0 1200.635 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9;H7C278 D3DP78 78 88 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.00046144 87.913 2 1.4117 1.4762 NaN 1 Median 1.4117 1.4762 NaN 1 0 Median NaN NaN NaN 0 0 Median 38902000 16448000 22454000 38902000 16448000 22454000 0 0 0 3663 610 3761 9668;9669 15172;15173;15174 15172 3 ESLIDGIK DSVTKSKFDNLYGCRESLIDGIKRATDVMI DNLYGCRESLIDGIKRATDVMIAGKVAVVA R E S I K R 0 0 0 1 0 0 1 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 8 0 873.48075 P23526;Q1RMG2 P23526 197 204 AHCY Adenosylhomocysteinase yes no 2 0.027047 54.157 1 1.7938 1.7905 NaN 1 Median 1.7938 1.7905 NaN 1 0 Median NaN NaN NaN 0 0 Median 14861000 4185500 10675000 14861000 4185500 10675000 0 0 0 3664 1512 3762 9670 15175 15175 1 ESLITDSGK IRPQNGWSFIRIPGKESLITDSGKLYALDV IRIPGKESLITDSGKLYALDVLLTRLKSQG K E S G K L 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 2 1 0 0 0 0 0 9 0 948.47639 A0A024R9R7;Q9ULG1;A8K2V6 A0A024R9R7 1094 1102 INOC1;INO80 DNA helicase INO80 yes no 2 0.028936 46.462 1 0.85648 0.85711 NaN 1 Median 0.85648 0.85711 NaN 1 0 Median NaN NaN NaN 0 0 Median 9794600 6640000 3154600 9794600 6640000 3154600 0 0 0 3665 288 3763 9671 15176;15177 15177 2 ESLLVSHPSVQTK TLSSTPQTIQRTVSKESLLVSHPSVQTKSP SKESLLVSHPSVQTKSPGGLSIQNEPLPPG K E S T K S 0 0 0 0 0 1 1 0 1 0 2 1 0 0 1 3 1 0 0 2 0 0 13 0 1423.7671 A0A087WX60;Q86TC9 A0A087WX60 467 479 MYPN Myopalladin yes no 2 7.1101E-15 130.01 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6496500 0 6496500 6496500 0 6496500 0 0 0 3666 429 3764 9672 15178 15178 1 ESLNLEDQIESDESELK QDLSDNREKLASILKESLNLEDQIESDESE LNLEDQIESDESELKKLKTEENSFKRLMIV K E S L K K 0 0 1 2 0 1 5 0 0 1 3 1 0 0 0 3 0 0 0 0 0 0 17 0 1976.9062 A0A024R8Y0;Q9BZD4 A0A024R8Y0 316 332 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 2.821E-05 82.069 2 2 0.85895 0.79457 9.0799 4 Median 0.82433 0.84787 4.0172 2 0 Median 0.92914 0.73618 5.6271 2 0 Median 71103000 38189000 32914000 41268000 24047000 17221000 29835000 14142000 15693000 3667 264 3765 9673;9674;9675;9676 15179;15180;15181;15182;15183;15184 15180 6 ESLNLEDQIESDESELKK QDLSDNREKLASILKESLNLEDQIESDESE NLEDQIESDESELKKLKTEENSFKRLMIVK K E S K K L 0 0 1 2 0 1 5 0 0 1 3 2 0 0 0 3 0 0 0 0 0 0 18 1 2105.0012 A0A024R8Y0;Q9BZD4 A0A024R8Y0 316 333 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 3 0.045665 9.0576 1 1.0203 0.88314 NaN 1 Median NaN NaN NaN 0 0 Median 1.0203 0.88314 NaN 1 0 Median 3690000 1322500 2367600 0 0 0 3690000 1322500 2367600 3668 264 3766 9677 15185 15185 1 ESLQDTQPVGVLVDCCK DESLGPSDLELRELKESLQDTQPVGVLVDC LQDTQPVGVLVDCCKTLDQAKAVLKFIEGI K E S C K T 0 0 0 2 2 2 1 1 0 0 2 1 0 0 1 1 1 0 0 3 0 0 17 0 1946.9078 Q05CW7;E9PMU0;Q9H0A0;A0A087WV29 Q9H0A0 240 256 NAT10 N-acetyltransferase 10 no no 2 4.1726E-57 178.58 2 2 1.0801 1.0578 14.98 4 Median 0.82473 0.92867 1.0327 2 0 Median 1.4072 1.2034 0.86551 2 0 Median 417980000 203350000 214630000 246820000 130920000 115910000 171160000 72435000 98724000 3669 2023;1687 3767 9678;9679;9680;9681 15186;15187;15188;15189;15190;15191;15192;15193 15187 8 ESLTSFYQEEIQER ELLEEMYEEKLNILKESLTSFYQEEIQERD KESLTSFYQEEIQERDEKIEELEALLQEAR K E S E R D 0 1 0 0 0 2 4 0 0 1 1 0 0 1 0 2 1 0 1 0 0 0 14 0 1757.8108 O95235 O95235 631 644 KIF20A Kinesin-like protein KIF20A yes yes 2 2.0173E-22 138.99 2 2 1.2456 1.0721 7.9297 2 Median NaN NaN NaN 0 0 Median 1.2456 1.0721 7.9297 2 0 Median 116570000 27232000 89336000 54254000 0 54254000 62314000 27232000 35082000 3670 1421 3768 9682;9683;9684;9685 15194;15195;15196;15197;15198;15199 15194 6 ESLTSFYQEEIQERDEK ELLEEMYEEKLNILKESLTSFYQEEIQERD LTSFYQEEIQERDEKIEELEALLQEARQQS K E S E K I 0 1 0 1 0 2 5 0 0 1 1 1 0 1 0 2 1 0 1 0 0 0 17 1 2129.9753 O95235 O95235 631 647 KIF20A Kinesin-like protein KIF20A yes yes 3 6.0135E-05 56.906 2 1.4132 1.2019 4.4733 2 Median NaN NaN NaN 0 0 Median 1.4132 1.2019 4.4733 2 0 Median 19343000 8543200 10800000 0 0 0 19343000 8543200 10800000 3671 1421 3769 9686;9687 15200;15201 15200 2 ESLTTDLQTR NKPGSVKPTQTIAVKESLTTDLQTRKEKDT TIAVKESLTTDLQTRKEKDTPNENRQKLRI K E S T R K 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 1 3 0 0 0 0 0 10 0 1162.583 J3QQW9;Q15022;A8K1U9 J3QQW9 381 390 SUZ12 Polycomb protein SUZ12 yes no 2 8.1487E-06 123.35 1 2 2.0187 1.6468 19.208 3 Median 1.0413 1.1843 NaN 1 0 Median 2.0189 1.6517 0.42138 2 0 Median 147340000 63449000 83894000 118830000 54168000 64660000 28515000 9280800 19234000 3672 1336 3770 9688;9689;9690 15202;15203;15204 15202 3 ESMAGNKPANAVLHK AEVECLAESHQHLSKESMAGNKPANAVLHK ESMAGNKPANAVLHKVLKQLEELLSDMKAD K E S H K V 3 0 2 0 0 0 1 1 1 0 1 2 1 0 1 1 0 0 0 1 0 0 15 1 1565.7984 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1831 1845 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 3.9881E-06 88.552 2 0.90096 1.0447 1.2661 2 Median 0.90096 1.0447 1.2661 2 0 Median NaN NaN NaN 0 0 Median 34250000 17791000 16459000 34250000 17791000 16459000 0 0 0 3673 515 3771 9691;9692 15205;15206;15207 15206 370 3 ESNMSTLLER RYISWTEQNYPQGGKESNMSTLLERAVEAL PQGGKESNMSTLLERAVEALQGEKRYYSDP K E S E R A 0 1 1 0 0 0 2 0 0 0 2 0 1 0 0 2 1 0 0 0 0 0 10 0 1178.5601 O60566 O60566 95 104 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.020812 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3674 1396 3772 9693 15208 15208 1072 1 ESNTDQGFFK VVTDVTSNFLTVTIKESNTDQGFFKEKR__ TVTIKESNTDQGFFKEKR____________ K E S F K E 0 0 1 1 0 1 1 1 0 0 0 1 0 2 0 1 1 0 0 0 0 0 10 0 1171.5146 Q9HC52 Q9HC52 377 386 CBX8 Chromobox protein homolog 8 yes yes 2 0.0034605 64.42 1 2 1.4474 1.1277 11.067 3 Median 0.91912 0.94964 NaN 1 0 Median 1.4592 1.1475 2.4653 2 0 Median 31865000 15558000 16306000 24987000 12578000 12409000 6877700 2980300 3897500 3675 2052 3773 9694;9695;9696 15209;15210;15211 15209 3 ESPELLELIEDLK LAKVSVKEKLKMLRKESPELLELIEDLKVK RKESPELLELIEDLKVKLTEVKDELEPLLE K E S L K V 0 0 0 1 0 0 4 0 0 1 4 1 0 0 1 1 0 0 0 0 0 0 13 0 1526.808 Q9NQZ2 Q9NQZ2 222 234 UTP3 Something about silencing protein 10 yes yes 2 8.0476E-75 222.18 2 0.97596 1.1398 0.66894 2 Median 0.97596 1.1398 0.66894 2 0 Median NaN NaN NaN 0 0 Median 535240000 274850000 260390000 535240000 274850000 260390000 0 0 0 3676 2063 3774 9697;9698 15212;15213;15214 15213 3 ESPVEFTGHK LAAFADALEFADEEKESPVEFTGHKLIGVY ADEEKESPVEFTGHKLIGVYTDFAFRITPR K E S H K L 0 0 0 0 0 0 2 1 1 0 0 1 0 1 1 1 1 0 0 1 0 0 10 0 1129.5404 Q5SY16 Q5SY16 486 495 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 8.2366E-06 100.02 2 1.6644 1.7025 NaN 1 Median 1.6644 1.7025 NaN 1 0 Median NaN NaN NaN 0 0 Median 31655000 13019000 18636000 31655000 13019000 18636000 0 0 0 3677 1818 3775 9699;9700 15215;15216 15215 2 ESQDTSFTTLVER TETIAKLVKYMYDNRESQDTSFTTLVERVI NRESQDTSFTTLVERVIQQLEGAFALVFKS R E S E R V 0 1 0 1 0 1 2 0 0 0 1 0 0 1 0 2 3 0 0 1 0 0 13 0 1511.7104 Q06210 Q06210 164 176 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 8.7208E-10 124.42 2 2.5765 2.7333 9.0761 2 Median 2.5765 2.7333 9.0761 2 0 Median NaN NaN NaN 0 0 Median 61586000 19098000 42488000 61586000 19098000 42488000 0 0 0 3678 1688 3776 9701;9702 15217;15218 15218 2 ESQVNFQEGQLNSGK LEKTKQKISHELQVKESQVNFQEGQLNSGK ESQVNFQEGQLNSGKKQIEKLEQELKRCKS K E S G K K 0 0 2 0 0 3 2 2 0 0 1 1 0 1 0 2 0 0 0 1 0 0 15 0 1663.7802 P49454 P49454 94 108 CENPF Centromere protein F yes yes 2 1.5056E-05 89.189 2 1 1.5184 1.385 15.047 2 Median 1.181 1.2452 NaN 1 0 Median 1.9522 1.5405 NaN 1 0 Median 25096000 16005000 9090900 23070000 15432000 7637700 2025900 572690 1453200 3679 1581 3777 9703;9704;9705 15219;15220;15221;15222;15223 15219 5 ESRYEEEEEQSR KDWDELEEEARKADRESRYEEEEEQSRSMS ADRESRYEEEEEQSRSMSRKRKASVHSSGR R E S S R S 0 2 0 0 0 1 6 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 12 1 1569.6543 Q9Y5B9 Q9Y5B9 1003 1014 SUPT16H FACT complex subunit SPT16 yes yes 3 9.1371E-05 78.324 1 0.55186 0.61736 NaN 1 Median 0.55186 0.61736 NaN 1 0 Median NaN NaN NaN 0 0 Median 7053300 4707800 2345500 7053300 4707800 2345500 0 0 0 3680 2148 3778 9706 15224;15225;15226 15225 3 ESSLTEPVIVGLLK YHPQLAYCVVQFLEKESSLTEPVIVGLLKF KESSLTEPVIVGLLKFWPKTHSPKEVMFLN K E S L K F 0 0 0 0 0 0 2 1 0 1 3 1 0 0 1 2 1 0 0 2 0 0 14 0 1483.8498 B4DSD7;E9PFR3;A8K6Y2;A0A024RD11;Q14738 B4DSD7 311 324 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 2 6.0078E-05 91.549 2 1 1.3031 1.3211 32.732 3 Plateau 1.3 1.3162 6.0909 2 0 Median 0.93134 0.75031 NaN 1 0 Median 29424000 13106000 16319000 26615000 11713000 14902000 2808900 1392400 1416500 3681 375 3779 9707;9708;9709 15227;15228;15229;15230;15231;15232 15228 6 ESSTVFELK ______________________________ IFTDAKESSTVFELKRIVEGILKRPPDEQR K E S L K R 0 0 0 0 0 0 2 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 9 0 1038.5233 B8ZZU8;I3L0M9;Q15370;A0A0B4J296 B8ZZU8 15 23 TCEB2 Transcription elongation factor B polypeptide 2 yes no 2 0.020893 49.85 1 1.9321 1.9992 NaN 1 Median 1.9321 1.9992 NaN 1 0 Median NaN NaN NaN 0 0 Median 12712000 3790200 8922000 12712000 3790200 8922000 0 0 0 3682 1117 3780 9710 15233 15233 1 ESSVGGEDLDSYPDFLHK HRRVAVKRVIKESKKESSVGGEDLDSYPDF VGGEDLDSYPDFLHKMTVVVLQKLNSAEKK K E S H K M 0 0 0 3 0 0 2 2 1 0 2 1 0 1 1 3 0 0 1 1 0 0 18 0 1993.8905 A7E234;Q9H582;Q9NVH8;Q9NZF0;A0A087WZL9 A7E234 817 834 ZNF644 Zinc finger protein 644 yes no 3 0.050573 8.8232 1 1.2589 1.0641 NaN 1 Median NaN NaN NaN 0 0 Median 1.2589 1.0641 NaN 1 0 Median 1442400 427290 1015100 0 0 0 1442400 427290 1015100 3683 693 3781 9711 15234 15234 1 ESTESSNTTIEDEDVK NFSAKSLLKKPDGVKESTESSNTTIEDEDV STESSNTTIEDEDVKARKQEIIKVTEQLIE K E S V K A 0 0 1 2 0 0 4 0 0 1 0 1 0 0 0 3 3 0 0 1 0 0 16 0 1782.7643 D6R938;A0A024RDK3;E9PBG7;E9PF82;B7Z2B0;Q13557;Q92991;H0Y9J2 D6R938 328 343 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta yes no 2 0.00024361 69.864 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2083000 0 2083000 2083000 0 2083000 0 0 0 3684 388 3782 9712 15235 15235 1 ESTGAQVQVAGDMLPNSTER GSLIGKGGCKIKEIRESTGAQVQVAGDMLP QVQVAGDMLPNSTERAITIAGIPQSIIECV R E S E R A 2 1 1 1 0 2 2 2 0 0 1 0 1 0 1 2 2 0 0 2 0 0 20 0 2088.9746 Q53SS8;Q15365;H3BRU6;F8VZX2;B4DRD7;F8W0G4;F8VXH9;J3QT27;Q5MJP6;E9PFP8;P57721;Q15366;B4DLC0 Q15366 106 125 PCBP1;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2 no no 2 1.4144E-65 185.27 3 2 2.0509 2.0053 55.161 4 Median 2.6397 2.9765 3.5778 2 0 Median 1.418 1.1782 22.942 2 0 Median 206180000 55205000 150970000 193360000 49571000 143790000 12812000 5634300 7177700 3685 1263;1760;1759 3783;3784 9713;9714;9715;9716;9717 15236;15237;15238;15239;15240;15241;15242;15243;15244;15245 15237 968 10 ESTGNMVTGQTVCK IFKGPAASTQEKNPRESTGNMVTGQTVCKN RESTGNMVTGQTVCKNKPNMSDPEESRGND R E S C K N 0 0 1 0 1 1 1 2 0 0 0 1 1 0 0 1 3 0 0 2 0 0 14 0 1510.6756 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 584 597 NCAPD2 Condensin complex subunit 1 yes no 2 4.2388E-05 87.363 2 1 1.5831 1.4587 37.377 2 Median 1.0777 1.1199 NaN 1 0 Median 2.3254 1.9 NaN 1 0 Median 19325000 5656500 13668000 14586000 4267000 10319000 4738400 1389500 3348900 3686 908 3785;3786 9718;9719;9720 15246;15247;15248;15249 15248 736 4 ESTLHLVLR QLEDGRTLSDYNIQKESTLHLVLRLRGGAK DYNIQKESTLHLVLRLRGGAKKRKKKSCTT K E S L R L 0 1 0 0 0 0 1 0 1 0 3 0 0 0 0 1 1 0 0 1 0 0 9 0 1066.6135 Q5RKT7;B2RDW1;P62979;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;Q8WYN9;Q9UFQ0;Q96H31;Q66K58;Q59EM9;M0R1M6;M0R2S1 Q5RKT7 64 72 RPS27A;HEL112;UBB;UBC;UBA52;UbC;DKFZp434K0435 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2;3 2.0076E-72 236.09 7 6 0.95581 0.93863 10.377 10 Median 0.87109 1.0303 12.26 5 0 Median 1.028 0.89705 5.7378 5 0 Median 4192100000 2189400000 2002700000 3570100000 1906000000 1664200000 621950000 283420000 338530000 3687 891 3787 9721;9722;9723;9724;9725;9726;9727;9728;9729;9730;9731;9732;9733 15250;15251;15252;15253;15254;15255;15256;15257;15258;15259;15260;15261;15262;15263;15264;15265;15266;15267;15268;15269;15270;15271;15272;15273;15274;15275;15276;15277;15278;15279 15253 30 ESTQLSPADLTEGKPTDPSK NKRQPKLQGKSAETRESTQLSPADLTEGKP SPADLTEGKPTDPSKLESPSFTGTGDTEIA R E S S K L 1 0 0 2 0 1 2 1 0 0 2 2 0 0 3 3 3 0 0 0 0 0 20 1 2100.0223 Q08J23 Q08J23 451 470 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 6.0088E-07 75.533 2 1 2.0939 2.4633 27.793 3 Plateau 2.039 2.3855 4.5364 2 0 Median 1.7138 1.4788 NaN 1 0 Median 109040000 35615000 73425000 103920000 33965000 69954000 5120500 1650100 3470400 3688 1694 3788 9734;9735;9736 15280;15281;15282 15280 3 ESTYQGHHTPPVQK TNTLTMYQWWRDVTRESTYQGHHTPPVQKG RESTYQGHHTPPVQKGLRYGMILFITSEVF R E S Q K G 0 0 0 0 0 2 1 1 2 0 0 1 0 0 2 1 2 0 1 1 0 0 14 0 1607.7692 A0A075X871;A0A059QTG6;H9E795;A0A075X6R4;H9E7H3;H9E7J9;Q5Y0G2;Q5Y0J7;Q5Y0H4;Q5Y0F3;Q5Y0E5;Q5Y078;Q5Y070;Q5Y065;Q5Y011;Q5XZY3;Q5XZX9;Q5XZT6;Q5XZR9;Q5XZP7;Q5XZL8;Q5XZK9;Q5XZI9;Q5XZI8;Q5XZI3;Q5XZI2;Q5XZH6;B4YCG0;T1Q6R9;T1Q5Q2;T1Q5P3;T1Q5B9;S4T6M3;Q9B2X0;Q9B2W9;Q9B2U6;Q9B1S6;Q9B1S4;Q8WCY1;Q8HNQ7;Q85L10;Q85L04;Q85KZ1;Q85KW2;Q85KW0;Q7YEF1;Q7YCF3;Q7YCE5;Q7YCE0;Q7YCC7;Q7Y664;Q6WQG6;Q6WQA1;Q6RRW7;Q6RPE6;Q6RMU0;Q6RLY3;Q6R0W6;Q6R0Q1;Q5SB31;Q5SAG0;Q4F2U0;Q4F2A8;Q4F1I5;Q4F0T8;Q4F0P9;Q4EZD1;Q4EXJ4;Q4EWP5;Q305X3;Q305K6;Q305I0;Q27H55;Q15IP0;Q15II8;Q0Z7G1;Q0Z7D5;Q0G899;I6N522;F1AKZ3;F1AK70;E0Y4D8;D7P622;D7NV03;D3K5V4;D0V1V1;C7B3W9;C7B321;B7TMW4;B5M8C0;B4YBC2;B4F441;B3VEA5;B2Z642;B2Z5S5;B2XNX9;B2XNQ1;B2XMF0;B2XGB4;B2XFT2;B2XEN1;B2XEK5;B2WRF9;B1NVE6;A8JLT5;A6ZFQ8;A6ZDK7;A6ZC77;A6ZBW0;A6ZB50;A6Z9S0;A6Z9Q7;A6Z8Z7;A6Z8G5;A6Z809;A6Z708;A6Z460;A6Z2T0;A6YZY0;A6YX95;A6YWQ1;A6YW19;A1DV22;A1DUU4;A0SD91;A0A1S6M0V0;A0A0R4PYF0;A0A0R4PX57;A0A0N6YRH7;A0A0E3D7H3;X5CKC7;X5CAY7;X5CAG3;X5C9X5;X5C9F1;X5C127;X5BXV3;X2CLI8;W8DJM3;W8DE98;W8DDQ7;W0C1D3;V9N9G5;V9JJC5;V9JEP3;V9JBV1;V9J277;V5N323;V5LA48;V5JMB0;U5ZAB9;U5Z242;U5YV97;U3LQZ1;U3LB43;U3L8W6;U3L7D7;U3L3K7;S4WYR4;S4V7D6;S4UQJ2;R9YA13;R9Y6C9;R9Y4I8;R9Y2C7;R9XZ24;Q7GIM7;Q6VLN4;Q6VKA3;Q6VJ16;Q6VIM0;Q6VIH5;Q6VIB9;Q6VHA9;Q6VH99;Q5XSC1;Q4ZF68;Q4ZEF8;Q4ZED2;Q4ZEA6;Q4VFD0;Q4GV60;Q4GU59;Q4GSY0;Q4GPN6;Q4GPI4;Q4GMA4;Q4GIY4;Q4GIA0;Q4GI22;Q4GG20;Q4GFE9;Q4GC16;Q4GBF8;Q4G9U9;Q4G7C8;Q4G6V9;Q4G6P4;Q3S961;Q2HKT7;Q2HKI3;Q2HKH0;Q2HJS3;Q19MP4;Q15HG3;Q15H46;Q0ZFF5;Q0VXC5;N0BUK3;M1LF78;L7XY70;L7XNA1;L7XHF6;L7XE90;L7XE42;L7SJG0;L7SDS5;L0E7R8;K9R3V8;K9MXE4;K7X9W4;K7DVY4;K4GWK0;J7HNV9;J7H4R4;I6V941;I3Q9B3;I3Q7D7;I3Q632;I3Q1J6;I3PZU8;I3PX88;H9T5S2;H9T437;H9SVZ0;H9SN86;H9SMZ5;H9SHR2;H9SGP8;H9SGF7;H9SEK7;H9S0W7;H9RPS2;H9RMG7;H9RLV9;H9RAK7;H9R4P0;H9R484;H9QZW3;H9QYR0;H9QWF4;H9QVE0;H9QRZ4;H9QQ96;H9QP82;H9QNT9;H9QNC0;H9QIJ3;H9QDS9;H9Q8W3;H9Q589;H9Q2D8;H9PV14;H9PS37;H9PIE5;H9PG91;H9PBU4;H9P9C3;H9P818;H9P593;H9P2S2;H9NYP2;H9NYK3;H9NV96;H9NU95;H9NS67;H9NRT7;H9NQ52;H9MXE9;H9M5G1;H9E7U0;H9E7N8;H9E7L2;H9E7I6;H9E7G0;H9E782;H9A8A3;H6WIW4;H6WIB9;H6WGK8;G9LLZ5;G9LF53;G9LCP5;G8JEA2;G8JB19;G5D8N5;G5D8J6;G5D8E4;G5D8B8;G5D827;G5D7X5;G4W4F2;G4W2K2;G4VYZ1;G3EBM6;G3EBI7;G3EBC2;G3CA52;G3C9Y7;G1FK61;F8V9Z2;F6M8I7;F2WN35;F2WIP2;F2WID8;F2WHZ5;F2WHP1;F2WG19;F2WFE8;F2WEE7;F1KL87;F1KCG8;F1DLM3;F1CIL3;F1CI70;F1B6Q7;F1B675;E9LB22;E9LAC5;E7E4G9;E7E3Q9;E7CNJ7;E7CM99;E7CLZ5;E5LFL6;E5EY89;E5E1P4;E5E1I7;E5E1D5;E5E0U0;E5DYD2;E5DY67;E2J0C2;E2FQB7;E1B320;D6N765;D6N462;D6C3F2;D6BZS8;D4IH23;D1GI28;C9D5W0;C8YGY6;C8Y5S3;C8Y3W0;C8XZH6;C7SKT4;C7SJU6;C5MM24;C4RU97;C4PK82;B8XZS7;B8X4N0;B8RFL3;B4YGV7;B3DE35;B2ZNN0;B2YAW2;B2KLD8;B2CB92;B2CB40;B1W7S8;B1W6U0;B0Z7E9;B0Z745;B0Z6N9;B0EWB5;A8WFB7;A7XTZ1;A7LFE4;A7LDP6;A4ZMW5;A4ZMF9;A4ZLS9;A4ZLI8;A4ZLD6;A3RM82;A1DTV1;A1DTL0;A1DTJ7;A0A1S6P8I0;A0A1S6NF74;A0A1S6MWY7;A0A1S6M8U8;A0A1S6LZ79;A0A1J0QPU7;A0A1J0QF46;A0A1J0Q6T5;A0A1J0PT73;A0A1B1LLR5;A0A1B1CX69;A0A193DRQ4;A0A143FYM1;A0A141ZSN7;A0A141ZSL1;A0A140DGE8;A0A140DG57;A0A0Y0LWT9;A0A0S2IAR5;A0A0K1Z5H7;A0A0K1HQG2;A0A0G3FFE5;A0A0G2UR35;A0A0E3T332;A0A0E3T2A4;A0A0E3M2L1;A0A0E3JM36;A0A0C5B7S7;A0A097QDD8;A0A097Q7A4;A0A097Q5K4;A0A097Q1S3;A0A097Q0W3;A0A097PZZ2;A0A096YC77;A0A096X3H2;A0A096WXN1;A0A096WNK8;A0A096WNG4;A0A096WAQ9;A0A096W9H4;A0A088FT95;A0A075C7G6;A0A068C314;A0A068C1X3;A0A068BWL1;A0A068BSM3;A0A068BLJ0;A0A059SF52;A0A059S9H9;A0A059S1K3;A0A059RYZ4;A0A059RWN6;A0A059RWD2;A0A059RW26;A0A059RVV1;A0A059RV52;A0A059RV13;A0A059RUW7;A0A059RTY0;A0A059RTN7;A0A059RSR4;A0A059RSL9;A0A059RSE7;A0A059RSC2;A0A059RSC0;A0A059RS90;A0A059RS36;A0A059RRZ0;A0A059RR81;A0A059RR60;A0A059RQG8;A0A059RPC5;A0A059RP63;A0A059RNY9;A0A059RNV0;A0A059RNN3;A0A059RMZ2;A0A059RMR4;A0A059RME4;A0A059RLQ9;A0A059RLC3;A0A059RKX0;A0A059RK35;A0A059RK12;A0A059RJ07;A0A059RID7;A0A059RHW4;A0A059RHP6;A0A059RHB6;A0A059RGW3;A0A059RC73;A0A059R8Y9;A0A059R879;A0A059R5A7;A0A059R342;A0A059QTP8;A0A059QTI8;A0A059QT91;A0A059QSW1;A0A059QSS8;A0A059QSG6;A0A059QRQ4;A0A059QQR4;A0A059QQF2;A0A059QPY1;A0A059QP57;A0A059QP19;A0A059QP15;A0A059QNP6;A0A059QNN3;A0A059QMM8;A0A059QMC6;A0A059QLT7;A0A059QJU5;A0A059QJQ7;A0A059QJI7;A0A059QIM7;A0A059QGM3;A0A059QFL5;A0A059QF86;A0A059QDR4;A0A059QDQ3;A0A059QD68;A0A059QB52;A0A023R2W4;A0A023QW72;A0A023QSW5;A0A023QKT8;A0A023Q4K2;T2HQ00;T2HNX6;T2HLZ8;T2HLK2;T2HLG2;T2HKR7;T2HKR6;T2HKD7;E7AXU6;B9EF90;B9EEI0;B9EEE1;B9EE11;B9ECT2;I7H1S4;P00414 A0A075X871 64 77 COX3;COIII;CO3;cox3;coxIII;MT-CO3 Cytochrome c oxidase subunit 3 yes no 2;3 2.4452E-05 80.96 3 2 1.6815 1.3355 19.966 5 Median 1.3325 1.3355 26.617 3 0 Median 1.7946 1.426 9.6509 2 0 Median 40202000 17543000 22659000 34087000 15333000 18755000 6114800 2210600 3904200 3689 2 3789 9737;9738;9739;9740;9741 15283;15284;15285;15286;15287;15288;15289 15283 7 ESVDGQWVCISDVNK ILAVSGGDNKVTLWKESVDGQWVCISDVNK ESVDGQWVCISDVNKGQGSVSASVTEGQQN K E S N K G 0 0 1 2 1 1 1 1 0 1 0 1 0 0 0 2 0 1 0 3 0 0 15 0 1734.7883 Q53GB2;A0A0C4DFR6;P55735 Q53GB2 291 305 SEC13 Protein SEC13 homolog yes no 2 0.0018829 64.55 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7172200 0 7172200 7172200 0 7172200 0 0 0 3690 506 3790 9742;9743 15290;15291 15290 2 ESVDLPEEK LNLKEDHEVEVGVLKESVDLPEEKLPISDS EVGVLKESVDLPEEKLPISDSPPDTQEIHV K E S E K L 0 0 0 1 0 0 3 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 9 0 1044.4975 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1499 1507 AHCTF1 Protein ELYS yes no 2 3.4163E-05 112.41 2 1.2598 1.3956 5.9108 2 Median 1.2598 1.3956 5.9108 2 0 Median NaN NaN NaN 0 0 Median 165320000 79114000 86202000 165320000 79114000 86202000 0 0 0 3691 1945 3791 9744;9745 15292;15293;15294;15295 15295 4 ESVFFAEPPFK VSSPRSITSTPLSGKESVFFAEPPFKAEIS LSGKESVFFAEPPFKAEISSIRENKDRLSD K E S F K A 1 0 0 0 0 0 2 0 0 0 0 1 0 3 2 1 0 0 0 1 0 0 11 0 1296.639 Q9P0K7;B4DNL3 Q9P0K7 303 313 RAI14 Ankycorbin yes no 2 0.013486 55.064 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5890800 0 5890800 5890800 0 5890800 0 0 0 3692 2093 3792 9746 15296 15296 1 ESVFTVEGGHR LKLLLGAGAVAYGVRESVFTVEGGHRAIFF YGVRESVFTVEGGHRAIFFNRIGGVQQDTI R E S H R A 0 1 0 0 0 0 2 2 1 0 0 0 0 1 0 1 1 0 0 2 0 0 11 0 1216.5836 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6;F5H0C5;F5H2D2 J3KPX7 38 48 PHB2 Prohibitin-2 yes no 2 2.4133E-12 139.98 2 2 1.939 1.9251 11.453 4 Median 1.5219 1.7831 0.67204 2 0 Median 2.5222 2.1553 5.8082 2 0 Median 712070000 271020000 441050000 660490000 256870000 403620000 51582000 14149000 37433000 3693 1328 3793 9747;9748;9749;9750 15297;15298;15299;15300;15301;15302;15303;15304;15305 15301 9 ESVHLETYPK FPELFNWFKNFLGYKESVHLETYPKERATE FLGYKESVHLETYPKERATEGIAMEIDYAS K E S P K E 0 0 0 0 0 0 2 0 1 0 1 1 0 0 1 1 1 0 1 1 0 0 10 0 1201.5979 Q96ST3 Q96ST3 526 535 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 1.8015E-08 122.28 1 0.73574 0.73382 NaN 1 Median 0.73574 0.73382 NaN 1 0 Median NaN NaN NaN 0 0 Median 7878000 4114300 3763700 7878000 4114300 3763700 0 0 0 3694 1990 3794 9751 15306;15307 15307 2 ESVLIISTDPAHNISDAFDQK TTCSCSLAVQLSKGRESVLIISTDPAHNIS STDPAHNISDAFDQKFSKVPTKVKGYDNLF R E S Q K F 2 0 1 3 0 1 1 0 1 3 1 1 0 1 1 3 1 0 0 1 0 0 21 0 2299.1332 A0A087WXS7;O43681;K7ERW9;B4DEE5 A0A087WXS7 49 69 ASNA1 ATPase ASNA1 yes no 3 2.4157E-08 69.986 2 3.8013 3.8445 NaN 1 Median 3.8013 3.8445 NaN 1 0 Median NaN NaN NaN 0 0 Median 8886100 2690600 6195500 8886100 2690600 6195500 0 0 0 3695 431 3795 9752;9753 15308;15309 15309 2 ESVLQMMQAGQR VKTIRDIIALNPLYRESVLQMMQAGQRVVD LYRESVLQMMQAGQRVVDNPIYLSDMGAAL R E S Q R V 1 1 0 0 0 3 1 1 0 0 1 0 2 0 0 1 0 0 0 1 0 0 12 0 1376.6541 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;A4VCH6 K7EJE8 182 193 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 1.1354E-06 97.635 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5783600 0 5783600 5783600 0 5783600 0 0 0 3696 946 3796 9754;9755 15310;15311 15310 769;770 2 ESVLTATSILNNPIVK DHIKGKQAYKEQIKRESVLTATSILNNPIV SVLTATSILNNPIVKARYERFVKGENPFEI R E S V K A 1 0 2 0 0 0 1 0 0 2 2 1 0 0 1 2 2 0 0 2 0 0 16 0 1697.9564 Q5BKZ1;A0A0A0MRN4 Q5BKZ1 444 459 ZNF326 DBIRD complex subunit ZNF326 yes no 2 0.00012839 77.124 2 1 1.6535 1.6834 23.065 3 Median 1.6927 1.7015 1.5122 2 0 Median 1.4692 1.1416 NaN 1 0 Median 20975000 7986300 12989000 17362000 6615900 10746000 3613000 1370300 2242700 3697 1804 3797 9756;9757;9758 15312;15313;15314 15312 3 ESVLTWLLK LSEQANQRSVFIPYRESVLTWLLKESLGGN VFIPYRESVLTWLLKESLGGNSKTAMIATI R E S L K E 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 1 1 1 0 1 0 0 9 0 1087.6277 Q15058 Q15058 655 663 KIF14 Kinesin-like protein KIF14 yes yes 2 0.020683 50.04 1 1.3318 1.47 NaN 1 Median 1.3318 1.47 NaN 1 0 Median NaN NaN NaN 0 0 Median 2593200 1194900 1398300 2593200 1194900 1398300 0 0 0 3698 1751 3798 9759 15315 15315 1 ESVLVEWR LAFSVTGTSLLSGGRESVLVEWRDATEKNK SLLSGGRESVLVEWRDATEKNKEFLPRLGA R E S W R D 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 1 0 2 0 0 8 0 1016.5291 A8K330;Q8IWA0 A8K330 269 276 WDR75 WD repeat-containing protein 75 yes no 2 0.0087985 77.072 2 0.79157 0.8588 11.198 2 Median 0.79157 0.8588 11.198 2 0 Median NaN NaN NaN 0 0 Median 84699000 46334000 38365000 84699000 46334000 38365000 0 0 0 3699 716 3799 9760;9761 15316;15317;15318 15316 3 ESYDDVSSFR FGFGGKKKGSKWNTRESYDDVSSFRAKTAH KWNTRESYDDVSSFRAKTAHGRGLKRPGKK R E S F R A 0 1 0 2 0 0 1 0 0 0 0 0 0 1 0 3 0 0 1 1 0 0 10 0 1203.5044 Q6IB29;H7C2Q8;Q99848 Q6IB29 263 272 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 3.7732E-16 154.28 2 2 0.93684 0.92468 13.843 4 Median 0.90192 1.0555 4.395 2 0 Median 0.96563 0.83385 0.30593 2 0 Median 686860000 353900000 332970000 607880000 314310000 293570000 78982000 39586000 39395000 3700 1316 3800 9762;9763;9764;9765 15319;15320;15321;15322;15323;15324;15325;15326;15327 15320 9 ESYDYNPNK KLWRINSKRMMNAIKESYDYNPNKTNRPFI MMNAIKESYDYNPNKTNRPFISQKIHFPDF K E S N K T 0 0 2 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 2 0 0 0 9 0 1128.4724 O75530;B4DVW7 O75530 276 284 EED Polycomb protein EED yes no 2 0.0011168 89.752 1 1.2859 1.2655 NaN 1 Median 1.2859 1.2655 NaN 1 0 Median NaN NaN NaN 0 0 Median 23972000 11766000 12206000 23972000 11766000 12206000 0 0 0 3701 1407 3801 9766 15328 15328 1 ESYSIYVYK KAQKKDGKKRKRSRKESYSIYVYKVLKQVH RKRSRKESYSIYVYKVLKQVHPDTGISSKA K E S Y K V 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 3 1 0 0 9 0 1150.5546 Q16778;P33778;P23527;A0A024RCJ2;P06899;Q8N257;Q6DRA6;Q6DN03 Q16778 36 44 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C yes no 2 0.0047626 75.738 1 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1645200000 1637200000 8019100 6352300 0 6352300 1638800000 1637200000 1666700 3702 1513 3802 9767;9768;9769;9770 15329;15330;15331;15332;15333;15334;15335;15336 15330 8 ESYSVYVYK KAQKKDGKKRKRSRKESYSVYVYKVLKQVH RKRSRKESYSVYVYKVLKQVHPDTGISSKA K E S Y K V 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 3 2 0 0 9 0 1136.539 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;A0A024RCL8;B4DR52;P57053;O60814;Q0D2M2 B2R4S9 36 44 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K yes no 2 0.00011703 98.523 10 3 0.80354 0.82095 21.019 3 Median 0.85584 0.88898 11.259 2 0 Median 0.80354 0.63469 NaN 1 0 Median 21463000000 21447000000 15903000 18476000000 18462000000 13934000 2987000000 2985100000 1968900 3703 34 3803 9771;9772;9773;9774;9775;9776;9777;9778;9779;9780;9781;9782;9783 15337;15338;15339;15340;15341;15342;15343;15344;15345;15346;15347;15348;15349;15350;15351;15352;15353;15354;15355;15356;15357;15358;15359;15360;15361;15362;15363;15364;15365;15366;15367;15368;15369;15370;15371;15372;15373;15374 15369 38 ESYSVYVYKVLK KAQKKDGKKRKRSRKESYSVYVYKVLKQVH SRKESYSVYVYKVLKQVHPDTGISSKAMGI K E S L K Q 0 0 0 0 0 0 1 0 0 0 1 2 0 0 0 2 0 0 3 3 0 0 12 1 1476.7864 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;A0A024RCL8;B4DR52;P57053;O60814;Q0D2M2 B2R4S9 36 47 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K yes no 2 3.5287E-05 109.66 2 0.90272 1.0509 1.5503 2 Median 0.90272 1.0509 1.5503 2 0 Median NaN NaN NaN 0 0 Median 41372000 19398000 21973000 41372000 19398000 21973000 0 0 0 3704 34 3804 9784;9785 15375;15376 15375 2 ESYTEEIVSEAESHVSGISR PVSSVRKKPKVTPTKESYTEEIVSEAESHV EIVSEAESHVSGISRIVLPTEKTTGARRSK K E S S R I 1 1 0 0 0 0 5 1 1 2 0 0 0 0 0 5 1 0 1 2 0 0 20 0 2208.0182 Q5QJE6;J3KP30;B7Z854;E9PRB3 Q5QJE6 133 152 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2;3 1.5448E-10 127.71 4 4 0.98708 1.0353 14.172 8 Median 0.92697 1.0314 4.0117 4 0 Median 1.3547 1.1541 19.568 4 0 Median 425510000 200550000 224960000 222550000 117250000 105300000 202960000 83297000 119660000 3705 1813 3805 9786;9787;9788;9789;9790;9791;9792;9793 15377;15378;15379;15380;15381;15382;15383;15384;15385;15386;15387;15388;15389 15386 13 ETAEADVASLNR AGTLQRELDHERKLRETAEADVASLNRRIQ KLRETAEADVASLNRRIQLVEEELDRAQER R E T N R R 3 1 1 1 0 0 2 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1274.6103 Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;Q59GR8 Q1ZYL5 43 54 TPM1 yes no 2 0.029218 47.844 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2307600 0 2307600 2307600 0 2307600 0 0 0 3706 1094 3806 9794 15390 15390 1 ETAEAYLGK FAPEEISAMVLTKMKETAEAYLGKKVTHAV VLTKMKETAEAYLGKKVTHAVVTVPAYFND K E T G K K 2 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 9 0 980.48148 V9HWB4;P11021;B4DEF7 V9HWB4 155 163 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.0089883 60.59 2 0.89514 0.92481 2.9448 2 Median 0.89514 0.92481 2.9448 2 0 Median NaN NaN NaN 0 0 Median 41936000 21581000 20355000 41936000 21581000 20355000 0 0 0 3707 1466 3807 9795;9796 15391;15392 15391 2 ETAENYLGHTAK YSPSQIGAFVLMKMKETAENYLGHTAKNAV KMKETAENYLGHTAKNAVITVPAYFNDSQR K E T A K N 2 0 1 0 0 0 2 1 1 0 1 1 0 0 0 0 2 0 1 0 0 0 12 0 1332.631 B7Z4V2;V9HW84;P38646;B7Z1V7;B7Z4T3;Q2F839 B7Z4V2 162 173 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2;3 1.3826E-237 321.23 3 1 2.2543 2.5786 46.046 4 Median 2.3125 2.62 3.1002 3 0 Median 1.2701 1.044 NaN 1 0 Median 340870000 108310000 232560000 331060000 104170000 226890000 9804500 4136200 5668300 3708 1092 3808 9797;9798;9799;9800 15393;15394;15395;15396;15397;15398;15399;15400 15394 8 ETAHSVLGSDANDVVITVPFDFGEK VNPEDVARLIFSKMKETAHSVLGSDANDVV ANDVVITVPFDFGEKQKNALGEAARAAGFN K E T E K Q 2 0 1 3 0 0 2 2 1 1 1 1 0 2 1 2 2 0 0 4 0 0 25 0 2646.2813 Q0VDF9;B4DYI5 Q0VDF9 126 150 HSPA14 Heat shock 70 kDa protein 14 yes no 3 4.2208E-07 48.771 1 1.7108 1.7234 NaN 1 Median 1.7108 1.7234 NaN 1 0 Median NaN NaN NaN 0 0 Median 16156000 4790900 11365000 16156000 4790900 11365000 0 0 0 3709 1697 3809 9801 15401 15401 1 ETANAIVSQQTPQR ADQEIPETDWEVYLRETANAIVSQQTPQRL RETANAIVSQQTPQRLLEVRGRLYELLTHC R E T Q R L 2 1 1 0 0 3 1 0 0 1 0 0 0 0 1 1 2 0 0 1 0 0 14 0 1541.7798 B4DKE6;Q53HK8;A0A024RDQ8;P40938;A0A087X270 B4DKE6 257 270 RFC3 Replication factor C subunit 3 yes no 2 3.798E-21 143.97 2 2 1.0735 1.1669 23.283 4 Linear 1.0295 1.0786 5.1419 2 0 Median 0.85463 0.72691 6.5384 2 0 Median 48494000 24445000 24049000 37682000 18565000 19117000 10812000 5880200 4932100 3710 391 3810 9802;9803;9804;9805 15402;15403;15404;15405;15406;15407;15408;15409;15410 15404 9 ETASELLMR QEKVDSIDDRHRKNRETASELLMRLKDNRD RHRKNRETASELLMRLKDNRDLQKFLQDCQ R E T M R L 1 1 0 0 0 0 2 0 0 0 2 0 1 0 0 1 1 0 0 0 0 0 9 0 1048.5223 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1176 1184 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0019086 70.525 2 1.3473 1.4188 6.0347 2 Median 1.3473 1.4188 6.0347 2 0 Median NaN NaN NaN 0 0 Median 35352000 14358000 20995000 35352000 14358000 20995000 0 0 0 3711 415 3811 9806;9807 15411;15412;15413 15412 301 3 ETDAFVCRPNAALCR YPCVSSLEQLTELGRETDAFVCRPNAALCR ETDAFVCRPNAALCRVYYEADTT_______ R E T C R V 3 2 1 1 2 0 1 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 15 1 1778.8192 B2RMQ4;Q8WWK9 B2RMQ4 660 674 CKAP2 Cytoskeleton-associated protein 2 yes no 3 0.00060655 48.112 2 2 0.93971 0.93237 13.685 4 Median 0.75057 0.81776 8.641 2 0 Median 1.1599 1.0182 2.5484 2 0 Median 57349000 29956000 27393000 40327000 21777000 18551000 17022000 8179500 8842300 3712 895 3812 9808;9809;9810;9811 15414;15415;15416;15417 15415 3 ETDAHLANPVLPDEVLQEAVPGSIR YRRLVEGLREASAARETDAHLANPVLPDEV LPDEVLQEAVPGSIRTAEHFLGFLRRLLEY R E T I R T 3 1 1 2 0 1 3 1 1 1 3 0 0 0 3 1 1 0 0 3 0 0 25 0 2669.3661 A8MX75;P18074;E7EVE9;K7EKF3 A8MX75 276 300 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 3 1.9626E-10 61.37 2 2 0.76209 0.70665 12.484 4 Median 0.67417 0.67667 10.765 2 0 Median 0.90442 0.7593 14.797 2 0 Median 58752000 31048000 27704000 34344000 21284000 13061000 24407000 9763800 14644000 3713 799 3813 9812;9813;9814;9815 15418;15419;15420;15421;15422;15423 15420 6 ETDCGVHINAGPEIGVASTK LTVGITNTVGSSISRETDCGVHINAGPEIG VHINAGPEIGVASTKAYTSQFVSLVMFALM R E T T K A 2 0 1 1 1 0 2 3 1 2 0 1 0 0 1 1 2 0 0 2 0 0 20 0 2053.9739 Q06210;B3KM63;A0A0S2Z4W6;B3KMR8;B2RB90;A0A0S2Z4X9;O94808 Q06210 475 494 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 yes no 3 0.027581 17.148 1 1.4312 1.1727 NaN 1 Median NaN NaN NaN 0 0 Median 1.4312 1.1727 NaN 1 0 Median 2446400 1160400 1286000 0 0 0 2446400 1160400 1286000 3714 1688 3814 9816 15424 15424 1 ETDDTLVLSFVGQTR PGIKGLWPLRSDPNRETDDTLVLSFVGQTR ETDDTLVLSFVGQTRVLMLNGEEVEETELM R E T T R V 0 1 0 2 0 1 1 1 0 0 2 0 0 1 0 1 3 0 0 2 0 0 15 0 1679.8366 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;B7Z859 Q16531 420 434 DDB1 DNA damage-binding protein 1 yes no 2 6.074E-22 142.91 2 2 0.8392 0.7917 14.25 4 Median 0.64668 0.698 8.8934 2 0 Median 1.0626 0.87382 5.0385 2 0 Median 102540000 57625000 44911000 81938000 47886000 34052000 20597000 9738400 10859000 3715 1770 3815 9817;9818;9819;9820 15425;15426;15427;15428;15429;15430;15431;15432;15433;15434 15428 10 ETDLLILFK ESAKKFVETPGQKYKETDLLILFKDDYFAK PGQKYKETDLLILFKDDYFAKKNEERKQNK K E T F K D 0 0 0 1 0 0 1 0 0 1 3 1 0 1 0 0 1 0 0 0 0 0 9 0 1090.6274 B5BUB5;P05455;Q14730;Q9UMH6 B5BUB5 177 185 SSB Lupus La protein yes no 2 0.0021808 75.738 2 2 0.85411 0.7998 58.994 4 Median 1.2858 1.3061 6.2786 2 0 Median 0.55121 0.47381 10.964 2 0 Median 21856000 10080000 11775000 19282000 8537800 10744000 2573700 1542300 1031300 3716 1077 3816 9821;9822;9823;9824 15435;15436;15437;15438;15439;15440 15435 6 ETDLQELFRPFGSISR DNATIRVTNLSEDTRETDLQELFRPFGSIS TDLQELFRPFGSISRIYLAKDKTTGQSKGF R E T S R I 0 2 0 1 0 1 2 1 0 1 2 0 0 2 1 2 1 0 0 0 0 0 16 1 1893.9585 Q6IAM0;O75821;A8K5K5;K7EP16;K7ENA8 Q6IAM0 252 267 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 3 0.0097107 25.957 1 1.1756 1.0742 NaN 1 Median NaN NaN NaN 0 0 Median 1.1756 1.0742 NaN 1 0 Median 2023500 937850 1085700 0 0 0 2023500 937850 1085700 3717 1414 3817 9825 15441 15441 1 ETDPDYEDVSVALPNK ______________________________ TDPDYEDVSVALPNKRHKAIENSARDAAVQ K E T N K R 1 0 1 3 0 0 2 0 0 0 1 1 0 0 2 1 1 0 1 2 0 0 16 0 1790.821 Q9ULM3 Q9ULM3 10 25 YEATS2 YEATS domain-containing protein 2 yes yes 2 0.0074301 48.948 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3718 2110 3818 9826 15442 15442 1 ETEEILADVLK TCNDYVALVHPDLDRETEEILADVLKVEVF DLDRETEEILADVLKVEVFRQTVADQVLVG R E T L K V 1 0 0 1 0 0 3 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1258.6656 P56537 P56537 124 134 EIF6 Eukaryotic translation initiation factor 6 yes yes 2 2.9891E-17 160.59 2 2 0.85384 1.0257 21.503 4 Linear 0.85384 0.94072 12.12 2 0 Median 0.91431 0.71452 21.995 2 0 Median 104400000 56413000 47988000 96901000 52646000 44255000 7500000 3767300 3732700 3719 1619 3819 9827;9828;9829;9830 15443;15444;15445;15446;15447;15448;15449 15443 7 ETEENAVWIR KILQRALKNVTVSFRETEENAVWIRIAWGT TVSFRETEENAVWIRIAWGTQYTKPNQYKP R E T I R I 1 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 10 0 1245.599 Q96H22;H3BRU7;H3BMC7;D3DUK9 Q96H22 125 134 CENPN;C16orf60 Centromere protein N yes no 2 0.017517 48.794 1 1 1.0218 0.88648 NaN 1 Median NaN NaN NaN 0 0 Median 1.0218 0.88648 NaN 1 0 Median 5743200 4414900 1328300 3303800 3303800 0 2439400 1111100 1328300 3720 1970 3820 9831;9832 15450;15451;15452 15452 3 ETEGGTVLTATTSELEAINK RKRLDQVEQELNELRETEGGTVLTATTSEL TVLTATTSELEAINKRVKDTMARSEDLDNS R E T N K R 2 0 1 0 0 0 4 2 0 1 2 1 0 0 0 1 5 0 0 1 0 0 20 0 2063.027 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 852 871 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 5.5704E-06 61.409 2 2 0.93664 0.86244 9.9745 4 Median 0.8418 0.85079 12.966 2 0 Median 1.0771 0.86408 11.312 2 0 Median 53995000 25435000 28560000 42067000 19840000 22227000 11928000 5594900 6333400 3721 803 3821 9833;9834;9835;9836 15453;15454;15455;15456;15457;15458 15454 6 ETEILFHSSLLR ELYKEPTNEELNRLRETEILFHSSLLRLQV RLRETEILFHSSLLRLQVEELLKEVRLSEK R E T L R L 0 1 0 0 0 0 2 0 1 1 3 0 0 1 0 2 1 0 0 0 0 0 12 0 1443.7722 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 74 85 NOL6 Nucleolar protein 6 yes no 2;3 9.3496E-18 126.39 2 2 1.1854 1.0878 5.6456 4 Median 1.0749 1.1124 9.3106 2 0 Median 1.2738 1.0878 1.9783 2 0 Median 113280000 52663000 60616000 63425000 31337000 32088000 49854000 21326000 28528000 3722 2038 3822 9837;9838;9839;9840 15459;15460;15461;15462;15463 15460 5 ETELELQMK CFGNWLATVEQRQEKETELELQMKLWMYNK EQRQEKETELELQMKLWMYNKKTQGFILNT K E T M K L 0 0 0 0 0 1 3 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 9 0 1119.5482 A8K330;Q8IWA0 A8K330 412 420 WDR75 WD repeat-containing protein 75 yes no 2 0.00042189 93.195 1 2 1.6115 1.6463 51.992 3 Plateau 1.6115 1.6463 NaN 1 0 Median 1.007 0.8333 48.123 2 0 Median 22516000 9841700 12674000 17799000 7528600 10270000 4717200 2313000 2404200 3723 716 3823;3824 9841;9842;9843 15464;15465;15466;15467 15464 551 4 ETENDDLTNVIQK PFIRPVMQALLHIIRETENDDLTNVIQKMI IRETENDDLTNVIQKMICEYSEEVTPIAVE R E T Q K M 0 0 2 2 0 1 2 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1517.7209 O95373;B3KQG6 O95373 552 564 IPO7 Importin-7 yes no 2 0.00010389 93.096 3 1 1.1268 0.91473 NaN 1 Median NaN NaN NaN 0 0 Median 1.1268 0.91473 NaN 1 0 Median 9262800 7566600 1696200 6406600 6406600 0 2856200 1160100 1696200 3724 1424 3825 9844;9845;9846;9847 15468;15469;15470;15471 15469 4 ETEQLEIK EEIKALEDARINLLKETEQLEIKEVHIEKN ARINLLKETEQLEIKEVHIEKNDAETLQKC K E T I K E 0 0 0 0 0 1 3 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 988.50769 H0Y9Z8;Q9BPX3 Q9BPX3 538 545 NCAPG Condensin complex subunit 3 no no 2 0.0048039 92.47 2 2 1.1144 1.0764 20.078 4 Median 0.79833 0.91441 0.5004 2 0 Median 1.5751 1.2926 3.3196 2 0 Median 429890000 229020000 200860000 366530000 203580000 162950000 63359000 25449000 37910000 3725 1995;1289 3826 9848;9849;9850;9851 15472;15473;15474;15475;15476;15477;15478;15479 15479 8 ETESEAEDNLDDLEK TLAQEEPVAAPEPKKETESEAEDNLDDLEK ETESEAEDNLDDLEKHLREKALRSMRKAQV K E T E K H 1 0 1 3 0 0 5 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 15 0 1735.7272 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3 A0A0S2Z4W1 871 885 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2 8.503E-06 94.122 1 1.3236 1.3668 NaN 1 Median 1.3236 1.3668 NaN 1 0 Median NaN NaN NaN 0 0 Median 11459000 5018600 6440200 11459000 5018600 6440200 0 0 0 3726 570 3827 9852 15480;15481;15482 15482 3 ETESQLLPDVGAIVTCK KSSENGALPVVSVVRETESQLLPDVGAIVT ESQLLPDVGAIVTCKVSSINSRFAKVHILY R E T C K V 1 0 0 1 1 1 2 1 0 1 2 1 0 0 1 1 2 0 0 2 0 0 17 0 1858.9346 R4GNH9;R4GMQ7;B1AMU7;B1AMU4;Q9Y3B2 R4GNH9 58 74 EXOSC1 Exosome complex component CSL4 yes no 2 0.00023137 49.333 1 0.85735 0.68576 NaN 1 Median NaN NaN NaN 0 0 Median 0.85735 0.68576 NaN 1 0 Median 8809800 4489200 4320600 0 0 0 8809800 4489200 4320600 3727 817 3828 9853 15483 15483 1 ETFEDSNLIPK EMRIPKNGIEKHLLRETFEDSNLIPKEILW HLLRETFEDSNLIPKEILWRPKEAFSDGIT R E T P K E 0 0 1 1 0 0 2 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 11 0 1291.6296 B4DY32;P08243 B4DY32 367 377 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2 0.0043515 66.27 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17417000 0 17417000 17417000 0 17417000 0 0 0 3728 1051 3829 9854;9855 15484;15485 15485 2 ETFLTSPEELYR ______________________________ TLKETFLTSPEELYRVFTTQELVQAFTHAP K E T Y R V 0 1 0 0 0 0 3 0 0 0 2 0 0 1 1 1 2 0 1 0 0 0 12 0 1483.7195 H0YJ63;G3V438;H0YJG7;O95433 H0YJ63 15 26 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 2 0.0053565 62.303 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9279500 0 9279500 9279500 0 9279500 0 0 0 3729 1273 3830 9856;9857 15486;15487 15486 2 ETFSSAEGTVDK SQEGSSDDAERKQERETFSSAEGTVDKDTT QERETFSSAEGTVDKDTTIMELRDRLPKKQ R E T D K D 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 2 2 0 0 1 0 0 12 0 1269.5725 A4LAA3;P46100;A0A096LNW1;A0A096LNL9;B7Z1D8 A4LAA3 886 897 ATRX Transcriptional regulator ATRX yes no 2 9.3504E-05 96.171 2 2 1.095 1.0429 15.085 4 Median 0.85573 0.89475 9.9503 2 0 Median 1.4081 1.1391 0.76553 2 0 Median 90042000 50095000 39947000 73413000 42767000 30646000 16629000 7327800 9301200 3730 672 3831 9858;9859;9860;9861 15488;15489;15490;15491;15492;15493;15494 15491 7 ETGDPGGQLVLAGDPR EPESLVAIAGLMEVKETGDPGGQLVLAGDP TGDPGGQLVLAGDPRQLGPVLRSPLTQKHG K E T P R Q 1 1 0 2 0 1 1 4 0 0 2 0 0 0 2 0 1 0 0 1 0 0 16 0 1580.7794 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 605 620 MOV10 Putative helicase MOV-10 yes no 2 0.00074531 57.802 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3731 1102 3832 9862 15495 15495 1 ETGEHLVHVK KRLRNGHVGISFVPKETGEHLVHVKKNGQH SFVPKETGEHLVHVKKNGQHVASSPIPVVI K E T V K K 0 0 0 0 0 0 2 1 2 0 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1147.5986 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5 P21333 2015 2024 FLNA;FLJ00119 Filamin-A yes no 2 0.00022829 103.87 2 1 1.7092 1.7188 7.1888 2 Median 1.7092 1.7188 7.1888 2 0 Median NaN NaN NaN 0 0 Median 21720000 8268700 13451000 20933000 8268700 12665000 786370 0 786370 3732 1504 3833 9863;9864;9865 15496;15497;15498;15499 15496 3 ETGFHLTTTNQGASAAGPGFSLK EGGLGYSQLGDDDLKETGFHLTTTNQGASA TNQGASAAGPGFSLKF______________ K E T L K F 3 0 1 0 0 1 1 4 1 0 2 1 0 2 1 2 4 0 0 0 0 0 23 0 2291.1182 Q96CA8;Q6P5Y5;Q4VBY6;A4VCI5;Q5QPR4;J3QR29;B4E3D9;A0A0D9SEI3;Q5QPR3;B7ZVY7;A0A0D9SER5;A0A0D9SEN2;J3QR44;Q9UQ88;P21127 Q96CA8 441 463 CDC2L2;CDC2L1;CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 3 0.010785 21.291 2 1.5004 1.5454 14.103 2 Median 1.5004 1.5454 14.103 2 0 Median NaN NaN NaN 0 0 Median 30812000 12744000 18068000 30812000 12744000 18068000 0 0 0 3733 520 3834 9866;9867 15500;15501 15501 2 ETGGAEGTGDAVLGEK ______________________________ TGGAEGTGDAVLGEKVLEEALLSREHVLEL R E T E K V 2 0 0 1 0 0 3 5 0 0 1 1 0 0 0 0 2 0 0 1 0 0 16 0 1489.6896 I3L0W0;A0A140VK05;B4DN86;Q92667 I3L0W0 12 27 AKAP1 A-kinase anchor protein 1, mitochondrial yes no 2 9.6315E-05 85.554 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6607800 0 6607800 6607800 0 6607800 0 0 0 3734 614 3835 9868;9869 15502;15503 15502 2 ETGGFSQEELLK AVKKLRQYISVKTQRETGGFSQEELLKIWK TQRETGGFSQEELLKIWKGLFYCMWVQDEP R E T L K I 0 0 0 0 0 1 3 2 0 0 2 1 0 1 0 1 1 0 0 0 0 0 12 0 1336.6511 Q14684;Q6PJM8 Q14684 42 53 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 5.1661E-06 121.6 2 1.9177 1.5411 2.1072 2 Median NaN NaN NaN 0 0 Median 1.9177 1.5411 2.1072 2 0 Median 30315000 9493400 20822000 0 0 0 30315000 9493400 20822000 3735 1740 3836 9870;9871 15504;15505;15506;15507;15508 15505 5 ETGGILR ALNHEIEELEKRKDKETGGILRSLEDALAE ELEKRKDKETGGILRSLEDALAEAQRVNTK K E T L R S 0 1 0 0 0 0 1 2 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 744.413 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;Q7Z2X1 A0A024R158 291 297 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.026734 77.496 1 0.90685 1.0716 NaN 1 Median 0.90685 1.0716 NaN 1 0 Median NaN NaN NaN 0 0 Median 254040000 144910000 109130000 254040000 144910000 109130000 0 0 0 3736 69 3837 9872 15509 15509 1 ETGSTSIQAADSTAVNGSITPTDK ADPHFHHFLLSQTEKETGSTSIQAADSTAV ADSTAVNGSITPTDKKIGFLGLGLMGSGIV K E T D K K 3 0 1 2 0 1 1 2 0 2 0 1 0 0 1 4 5 0 0 1 0 0 24 0 2350.1136 D3DUE6;K7EMM8;K7EQB2 D3DUE6 250 273 N-PAC;GLYR1 no no 2 1.357E-08 50.653 2 1.6341 1.6623 8.0924 2 Median 1.6341 1.6623 8.0924 2 0 Median NaN NaN NaN 0 0 Median 19368000 7075000 12293000 19368000 7075000 12293000 0 0 0 3737 1193;1346 3838 9873;9874 15510;15511;15512;15513 15511 4 ETGYPLAVK FDGSGGNNHAVEHYRETGYPLAVKLGTITP AVEHYRETGYPLAVKLGTITPDGADVYSYD R E T V K L 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 1 0 1 1 0 0 9 0 976.52295 A0A140VJZ1;P45974 A0A140VJZ1 239 247 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.014597 55.531 1 3.9726 4.2285 NaN 1 Median 3.9726 4.2285 NaN 1 0 Median NaN NaN NaN 0 0 Median 20722000 2844200 17878000 20722000 2844200 17878000 0 0 0 3738 613 3839 9875 15514 15514 1 ETGYTYILPK HLRTNHIYVSSDDIKETGYTYILPKNVLKK SDDIKETGYTYILPKNVLKKFICISDLRAQ K E T P K N 0 0 0 0 0 0 1 1 0 1 1 1 0 0 1 0 2 0 2 0 0 0 10 0 1183.6125 Q6P2Q9;Q53GM6 Q6P2Q9 2099 2108 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00051211 85.67 2 0.98162 1.0496 0.59478 2 Median 0.98162 1.0496 0.59478 2 0 Median NaN NaN NaN 0 0 Median 69199000 36329000 32870000 69199000 36329000 32870000 0 0 0 3739 1854 3840 9876;9877 15515;15516;15517 15517 3 ETGYVVERPSTTK RESDGFREEKNYKLKETGYVVERPSTTKDK LKETGYVVERPSTTKDKHKEEDKNSERITV K E T T K D 0 1 0 0 0 0 2 1 0 0 0 1 0 0 1 1 3 0 1 2 0 0 13 1 1465.7413 Q9NYF8;Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91 Q9NYF8 463 475 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2;3 1.742E-237 315.67 3 2 1.0996 1.2493 19.34 5 Median 1.0589 1.2738 12.15 3 0 Median 1.169 0.99333 7.4634 2 0 Median 277540000 134310000 143230000 258670000 125940000 132730000 18870000 8377900 10492000 3740 2083 3841 9878;9879;9880;9881;9882 15518;15519;15520;15521;15522;15523;15524 15522 7 ETHFPFAIR HVILSVLVSCCSSLKETHFPFAIRVFSLLQ CCSSLKETHFPFAIRVFSLLQKKIKKLESV K E T I R V 1 1 0 0 0 0 1 0 1 1 0 0 0 2 1 0 1 0 0 0 0 0 9 0 1116.5716 B2RWN5;Q9H583;Q5T3Q7;A2VDI1 B2RWN5 720 728 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2;3 0.00059135 68.224 4 2 0.99107 0.99976 5.7267 5 Median 0.97409 1.0234 6.3406 4 0 Median 1.1473 0.99976 NaN 1 0 Median 130150000 58143000 72010000 121780000 56851000 64927000 8375100 1292000 7083100 3741 897 3842 9883;9884;9885;9886;9887;9888 15525;15526;15527;15528;15529;15530;15531 15526 7 ETIDNNSVSSPLQSLQQR MQNWDAAMEDLTRLKETIDNNSVSSPLQSL DNNSVSSPLQSLQQRTWLIHWSLFVFFNHP K E T Q R T 0 1 2 1 0 3 1 0 0 1 2 0 0 0 1 4 1 0 0 1 0 0 18 0 2014.992 E5RGA2;B3KW56;Q6IAX5;B2R806;P60228;E5RHS5;H0YAW4 E5RGA2 101 118 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 4.4791E-05 69.602 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4815100 4815100 0 4815100 4815100 0 0 0 0 3742 857 3843 9889;9890 15532;15533 15533 2 ETIEILFSEGLIK RGIGIHHGGLLPILKETIEILFSEGLIKAL LKETIEILFSEGLIKALFATETFAMGINMP K E T I K A 0 0 0 0 0 0 3 1 0 3 2 1 0 1 0 1 1 0 0 0 0 0 13 0 1490.8232 P42285;A8K6I4;B4E3M6 P42285 465 477 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 8.9602E-06 101.38 2 0.97577 1.0202 14.766 2 Median 0.97577 1.0202 14.766 2 0 Median NaN NaN NaN 0 0 Median 9204000 4770800 4433100 9204000 4770800 4433100 0 0 0 3743 1563 3844 9891;9892 15534;15535;15536 15536 3 ETIELSPTGRPK IVNRTIANMFGSSEKETIELSPTGRPKRRT SEKETIELSPTGRPKRRTRKSINYSKIDDF K E T P K R 0 1 0 0 0 0 2 1 0 1 1 1 0 0 2 1 2 0 0 0 0 0 12 1 1326.7143 A0A087WSW7;F6XU50;Q6I7N8;A0A0B4J1V9;Q9NRZ9 A0A087WSW7 360 371 HELLS Lymphoid-specific helicase yes no 2 0.0049709 63.816 1 1.1395 1.2891 NaN 1 Median 1.1395 1.2891 NaN 1 0 Median NaN NaN NaN 0 0 Median 15913000 8099300 7813600 15913000 8099300 7813600 0 0 0 3744 400 3845 9893 15537 15537 1 ETIIAFAWEPNGSK RMREKQVPVDVVEMKETIIAFAWEPNGSKF KETIIAFAWEPNGSKFAVLHGEAPRISVSF K E T S K F 2 0 1 0 0 0 2 1 0 2 0 1 0 1 1 1 1 1 0 0 0 0 14 0 1561.7777 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q59FS8 Q96G38 371 384 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 2 0.0017985 68.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2573500 0 2573500 2573500 0 2573500 0 0 0 3745 241 3846 9894 15538 15538 1 ETILNLLR SILQERQSLPAWEERETILNLLRKHQVVVI LPAWEERETILNLLRKHQVVVISGMTGCGK R E T L R K 0 1 1 0 0 0 1 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 8 0 970.58113 Q6P158;B4DKW2;A0A087WZ11 Q6P158 551 558 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2 0.0090389 76.035 2 0.82928 0.84171 9.543 2 Median 0.82928 0.84171 9.543 2 0 Median NaN NaN NaN 0 0 Median 12879000 6761200 6117400 12879000 6761200 6117400 0 0 0 3746 1850 3847 9895;9896 15539;15540;15541 15539 3 ETLEAGNYESPMELCK YRDIIDTPMDFATVRETLEAGNYESPMELC TLEAGNYESPMELCKDVRLIFSNSKAYTPS R E T C K D 1 0 1 0 1 0 4 1 0 0 2 1 1 0 1 1 1 0 1 0 0 0 16 0 1869.8125 Q8WWQ0;Q9NWP3 Q8WWQ0 1368 1383 PHIP PH-interacting protein yes no 2 9.3583E-18 128.85 4 1 1.2806 1.162 39.834 2 Median 0.8725 0.87673 NaN 1 0 Median 1.8797 1.54 NaN 1 0 Median 28597000 15295000 13301000 26011000 14166000 11844000 2586000 1128900 1457200 3747 1942 3848;3849 9897;9898;9899;9900;9901 15542;15543;15544;15545;15546;15547;15548;15549 15545 1778 8 ETLESALIALDSEK GLGRPTPGLSQGPGKETLESALIALDSEKP KETLESALIALDSEKPKKLRFHPKQLYFSA K E T E K P 2 0 0 1 0 0 3 0 0 1 3 1 0 0 0 2 1 0 0 0 0 0 14 0 1517.7825 A0A1B0GV09;Q9H9B1;A0A0C4DGF8;A0A1B0GU48;A0A1B0GWF6 A0A1B0GV09 687 700 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 0.00097599 77.593 1 2 1.143 0.91967 2.9958 2 Median NaN NaN NaN 0 0 Median 1.143 0.91967 2.9958 2 0 Median 4490300 2046900 2443400 0 0 0 4490300 2046900 2443400 3748 631 3850 9902;9903;9904 15550;15551;15552;15553 15550 4 ETLIIEPEK ANMDNNQSQKTFKNKETLIIEPEKNASRIE KTFKNKETLIIEPEKNASRIESLEQEKVDE K E T E K N 0 0 0 0 0 0 3 0 0 2 1 1 0 0 1 0 1 0 0 0 0 0 9 0 1070.5859 F8VZN8;A0A024RBF1;B2RAH5;O14974;H0YIS4 F8VZN8 321 329 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 2 0.0022437 74.92 2 1.5128 1.5353 8.9081 2 Median 1.5128 1.5353 8.9081 2 0 Median NaN NaN NaN 0 0 Median 15956000 6072300 9883400 15956000 6072300 9883400 0 0 0 3749 336 3851 9905;9906 15554;15555 15554 2 ETLLNGVGYLHEGLSPMER DLIPYLEKLSDSTLKETLLNGVGYLHEGLS NGVGYLHEGLSPMERRLVEQLFSSGAIQVV K E T E R R 0 1 1 0 0 0 3 3 1 0 4 0 1 0 1 1 1 0 1 1 0 0 19 0 2114.0466 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5 O75643 1611 1629 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.00025511 52.814 1 0.77947 0.80254 NaN 1 Median 0.77947 0.80254 NaN 1 0 Median NaN NaN NaN 0 0 Median 19698000 10926000 8772500 19698000 10926000 8772500 0 0 0 3750 1411 3852 9907 15556 15556 1088 0 ETLLNSATTSLNSK EILTDMSRPVELSDRETLLNSATTSLNSKV RETLLNSATTSLNSKVVSQYSSLLSPMSVN R E T S K V 1 0 2 0 0 0 1 0 0 0 3 1 0 0 0 3 3 0 0 0 0 0 14 0 1477.7624 B7Z9L0;A8K3C3;P50991;B7Z2F4 B7Z9L0 105 118 CCT4 T-complex protein 1 subunit delta yes no 2 0.00022162 66.262 1 1 2.2009 2.0721 34.792 2 Median 2.6195 2.65 NaN 1 0 Median 1.8492 1.6202 NaN 1 0 Median 10296000 3558000 6738200 8993000 2930800 6062200 1303300 627270 676000 3751 721 3853 9908;9909 15557;15558 15557 1 ETLPDSGFSANIEDINEADLVRPLLPK KESSGGEKEVPPPPKETLPDSGFSANIEDI EDINEADLVRPLLPKDMERLTSLRAGIEGP K E T P K D 2 1 2 3 0 0 3 1 0 2 4 1 0 1 3 2 1 0 0 1 0 0 27 1 2952.508 P18583;H7C1M2 P18583 1714 1740 SON Protein SON yes no 3 0.0004744 31.819 1 1.1498 1.2744 NaN 1 Median 1.1498 1.2744 NaN 1 0 Median NaN NaN NaN 0 0 Median 9053800 3725100 5328600 9053800 3725100 5328600 0 0 0 3752 1499 3854 9910 15559 15559 1 ETLQLESAAEVGFVR ______________________________ ETLQLESAAEVGFVRFFQGMPEKPTTTVRL K E T V R F 2 1 0 0 0 1 3 1 0 0 2 0 0 1 0 1 1 0 0 2 0 0 15 0 1647.8468 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;V9H068;V9H0D5;V9H023;V9H0B2;Q0ZAJ2;V9H062;V9H015 V9H019 7 21 MSH2 DNA mismatch repair protein Msh2 yes no 2 4.8715E-05 83.137 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5500600 0 5500600 5500600 0 5500600 0 0 0 3753 1237 3855 9911 15560 15560 1 ETMQSLNDR IAGGLAGMGGIQNEKETMQSLNDRLASYLD GIQNEKETMQSLNDRLASYLDRVRSLETEN K E T D R L 0 1 1 1 0 1 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 9 0 1092.487 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__Q92764;C4AM86;CON__Q497I4;A0A024R1T2;Q92764 F8VZY9 82 90 KRT18;KRT35;KRTHA5 Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5 yes no 2 0.0063471 64.42 1 1 1.2713 1.1919 38.55 2 Median 0.86343 0.90749 NaN 1 0 Median 1.8719 1.5653 NaN 1 0 Median 15038000 6762800 8275000 11250000 5321500 5928900 3787400 1441300 2346100 3754 316 3856 9912;9913 15561;15562;15563 15561 3 ETNISYSQEADDR TPPSVVNEDFLHDLKETNISYSQEADDRVF LKETNISYSQEADDRVFRAHGHCLHEIFLL K E T D R V 1 1 1 2 0 1 2 0 0 1 0 0 0 0 0 2 1 0 1 0 0 0 13 0 1526.6485 A0A1B0GWA2;B7Z3Q4;O00116;B7ZAC5;Q53SG6 A0A1B0GWA2 84 96 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 0.015177 50.786 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3755 635 3857 9914;9915 15564;15565 15564 2 ETNLDSLPLVDTHSK RISLPLPNFSSLNLRETNLDSLPLVDTHSK ETNLDSLPLVDTHSKRTLLIKTVETRDGQV R E T S K R 0 0 1 2 0 0 1 0 1 0 3 1 0 0 1 2 2 0 0 1 0 0 15 0 1667.8366 V9HWE1;P08670;Q53HU8 V9HWE1 425 439 HEL113;VIM Vimentin yes no 2;3 4.5804E-17 137.84 4 3 1.5561 1.7549 32.452 7 Median 1.3715 1.5996 5.5076 4 0 Median 3.4335 2.8805 6.301 3 0 Median 1143600000 460030000 683530000 1000300000 428540000 571730000 143280000 31490000 111790000 3756 1457 3858 9916;9917;9918;9919;9920;9921;9922 15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576 15572 11 ETPDKVELSK RQVTCVAWVRCGVAKETPDKVELSKEEVKR CGVAKETPDKVELSKEEVKRLIAEAKEKLQ K E T S K E 0 0 0 1 0 0 2 0 0 0 1 2 0 0 1 1 1 0 0 1 0 0 10 1 1144.5976 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;Q86X79;Q05BL3;Q6PKI5;Q6PIN4 Q9BV37 20 29 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.017787 65.157 1 1.3666 1.1771 NaN 1 Median NaN NaN NaN 0 0 Median 1.3666 1.1771 NaN 1 0 Median 5929300 2492400 3436900 0 0 0 5929300 2492400 3436900 3757 339 3859 9923 15577 15577 1 ETPDPWQSLDPFDSLESK LREREGAPEPASCVKETPDPWQSLDPFDSL DPWQSLDPFDSLESKPFKKGRPYSVPPCVE K E T S K P 0 0 0 3 0 1 2 0 0 0 2 1 0 1 3 3 1 1 0 0 0 0 18 0 2089.948 A0A0A6YYG7;Q6IBW4 A0A0A6YYG7 312 329 NCAPH2 Condensin-2 complex subunit H2 yes no 2 2.6133E-05 68.83 1 0.70108 0.71511 NaN 1 Median 0.70108 0.71511 NaN 1 0 Median NaN NaN NaN 0 0 Median 12092000 7056900 5034800 12092000 7056900 5034800 0 0 0 3758 491 3860 9924 15578 15578 1 ETPHSPGVEDAPIAK NEEILERPAQLANARETPHSPGVEDAPIAK ETPHSPGVEDAPIAKVGVLAASMEAKASSQ R E T A K V 2 0 0 1 0 0 2 1 1 1 0 1 0 0 3 1 1 0 0 1 0 0 15 0 1546.7627 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 325 339 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 3.6707E-16 127.83 5 1 2.1299 2.0206 79.426 4 Median 1.6089 1.8138 93.239 3 0 Median 2.8197 2.2509 NaN 1 0 Median 176130000 46221000 129910000 172010000 44798000 127210000 4114200 1423300 2690800 3759 1010 3861 9925;9926;9927;9928;9929;9930 15579;15580;15581;15582;15583;15584;15585;15586 15584 7 ETPLSNCER ______________________________ ______________________________ K E T E R R 0 1 1 0 1 0 2 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 9 0 1104.487 B4DXG8;A5PLM5;Q06265;D6R905;D6RA17;D6RAP4 B4DXG8 3 11 EXOSC9 Exosome complex component RRP45 yes no 2 0.010479 59.245 1 0.78901 0.78245 NaN 1 Median 0.78901 0.78245 NaN 1 0 Median NaN NaN NaN 0 0 Median 8262200 4827700 3434500 8262200 4827700 3434500 0 0 0 3760 675 3862 9931 15587 15587 1 ETPSSILLGSNQGSVSK KSKESGSTLDLSGSRETPSSILLGSNQGSV PSSILLGSNQGSVSKRCDKQPAYAPTTTDH R E T S K R 0 0 1 0 0 1 1 2 0 1 2 1 0 0 1 5 1 0 0 1 0 0 17 0 1702.8737 A0A087WVZ6;H7C4X9;A0A087WYS3 A0A087WVZ6 1050 1066 ZMYND8 no no 2 0.00083091 45.115 2 0.64245 0.6519 4.2959 2 Median 0.64245 0.6519 4.2959 2 0 Median NaN NaN NaN 0 0 Median 27907000 12974000 14934000 27907000 12974000 14934000 0 0 0 3761 422;1317 3863 9932;9933 15588;15589;15590 15590 3 ETPYSEEDFQHLQK LRIPSNILLPEDKCKETPYSEEDFQHLQKE KETPYSEEDFQHLQKEIEQLQEKYKTELCT K E T Q K E 0 0 0 1 0 2 3 0 1 0 1 1 0 1 1 1 1 0 1 0 0 0 14 0 1749.7846 A8K1M4;Q9H081;I3L4K6 A8K1M4 106 119 MIS12 Protein MIS12 homolog yes no 3 0.037436 20.084 1 0.6359 0.64571 NaN 1 Median 0.6359 0.64571 NaN 1 0 Median NaN NaN NaN 0 0 Median 12788000 7237800 5550000 12788000 7237800 5550000 0 0 0 3762 704 3864 9934 15591 15591 1 ETQALILAPTR TFSISVLQCLDIQVRETQALILAPTRELAV IQVRETQALILAPTRELAVQIQKGLLALGD R E T T R E 2 1 0 0 0 1 1 0 0 1 2 0 0 0 1 0 2 0 0 0 0 0 11 0 1211.6874 A0A024R8W0;P38919 A0A024R8W0 106 116 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 1.2345E-11 119.53 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23759000 23759000 0 23759000 23759000 0 0 0 0 3763 261 3865 9935;9936;9937;9938 15592;15593;15594;15595 15593 4 ETQVILLDTPGIISPGK VHTTRCQALGVITEKETQVILLDTPGIISP QVILLDTPGIISPGKQKRHHLELSLLEDPW K E T G K Q 0 0 0 1 0 1 1 2 0 3 2 1 0 0 2 1 2 0 0 1 0 0 17 0 1779.9982 O75616;J3QSB2;J3QRV9 O75616 160 176 ERAL1 GTPase Era, mitochondrial yes no 2 0.00047166 88.092 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3764 1410 3866 9939 15596 15596 1 ETQYSFK HTPEGYRLNRNGDYKETQYSFKQVFGTHTT LNRNGDYKETQYSFKQVFGTHTTQKELFDV K E T F K Q 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 7 0 901.41815 H7BYN4;Q02241;H0YME6;H0YMJ4 H7BYN4 70 76 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.057145 51.787 1 0.97987 0.80856 NaN 1 Median NaN NaN NaN 0 0 Median 0.97987 0.80856 NaN 1 0 Median 2350000 973350 1376700 0 0 0 2350000 973350 1376700 3765 1312 3867 9940 15597 15597 1 ETSSTGEEALVAAVR HYVGGPLDALIQGLKETSSTGEEALVAAVR ETSSTGEEALVAAVRCYDDLSRLLWGLEGL K E T V R C 3 1 0 0 0 0 3 1 0 0 1 0 0 0 0 2 2 0 0 2 0 0 15 0 1518.7526 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 650 664 NOL6 Nucleolar protein 6 yes no 2 2.9329E-15 131.12 1 0.93339 1.0627 NaN 1 Median 0.93339 1.0627 NaN 1 0 Median NaN NaN NaN 0 0 Median 109400000 56900000 52504000 109400000 56900000 52504000 0 0 0 3766 2038 3868 9941 15598;15599 15599 2 ETSYEEALANQR VSAIGIFLVSTFSMKETSYEEALANQRKEM SMKETSYEEALANQRKEMAKTHHQKVEKKK K E T Q R K 2 1 1 0 0 1 3 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 12 0 1409.6423 A0A0A0MRV0;A7BI36;Q9P2E9;A2A2S5;Q32NB1 A0A0A0MRV0 35 46 RRBP1 Ribosome-binding protein 1 yes no 2 0.0010242 62.303 1 2 0.79899 0.79643 6.6477 3 Plateau 0.79849 0.79643 NaN 1 0 Median 0.82256 0.71652 3.7219 2 0 Median 15689000 7810300 7879000 11626000 5730700 5895400 4063200 2079600 1983600 3767 471 3869 9942;9943;9944 15600;15601;15602;15603 15600 4 ETSYGLSFFK GRAEKVTFQFSYGTKETSYGLSFFKPRPGN SYGTKETSYGLSFFKPRPGNFERNFSVNLY K E T F K P 0 0 0 0 0 0 1 1 0 0 1 1 0 2 0 2 1 0 1 0 0 0 10 0 1177.5655 Q9Y512 Q9Y512 169 178 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.00057758 84.615 1 1.2149 1.3233 NaN 1 Median 1.2149 1.3233 NaN 1 0 Median NaN NaN NaN 0 0 Median 49412000 25742000 23670000 49412000 25742000 23670000 0 0 0 3768 2147 3870 9945 15604;15605 15605 2 ETTDTDTADQVIASFK SGLVTFQAFIDFMSRETTDTDTADQVIASF TTDTDTADQVIASFKVLAGDKNFITAEELR R E T F K V 2 0 0 3 0 1 1 0 0 1 0 1 0 1 0 1 4 0 0 1 0 0 16 0 1740.8054 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144;A0A0S2Z3X3;A0A0S2Z3C0 A0A0S2Z3G9 838 853 ACTN4 Alpha-actinin-4 yes no 2 2.6627E-05 85.554 2 1.3822 1.4144 14.951 2 Median 1.3822 1.4144 14.951 2 0 Median NaN NaN NaN 0 0 Median 26000000 10133000 15867000 26000000 10133000 15867000 0 0 0 3769 548 3871 9946;9947 15606;15607;15608 15608 3 ETTESLHGDISSLK RTESDDLHTFLLEIKETTESLHGDISSLKT KETTESLHGDISSLKTTLLEGFAGVEEARE K E T L K T 0 0 0 1 0 0 2 1 1 1 2 1 0 0 0 3 2 0 0 0 0 0 14 0 1515.7417 A0A024R8B6;P35658;Q7Z3C4;A0A0A0MSW3 A0A024R8B6 797 810 NUP214;DKFZp686J0330 Nuclear pore complex protein Nup214 yes no 2 6.533E-11 117.86 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8675700 0 8675700 8675700 0 8675700 0 0 0 3770 246 3872 9948 15609 15609 1 ETTGPGTAGPQSNTTSSLK ASLLKNGEPEAELHKETTGPGTAGPQSNTT PGTAGPQSNTTSSLKGERKAIHTLQDVSTC K E T L K G 1 0 1 0 0 1 1 3 0 0 1 1 0 0 2 3 5 0 0 0 0 0 19 0 1832.8752 Q5VWN6;Q6IPC8 Q5VWN6 1706 1724 FAM208B;C10orf18 Protein FAM208B yes no 2 0.057223 31.089 1 2.1038 1.7091 NaN 1 Median NaN NaN NaN 0 0 Median 2.1038 1.7091 NaN 1 0 Median 2902200 1228300 1673900 0 0 0 2902200 1228300 1673900 3771 1833 3873 9949 15610 15610 1 ETTYYDVLGVKPNATQEELK ______________________________ DVLGVKPNATQEELKKAYRKLALKYHPDKN K E T L K K 1 0 1 1 0 1 3 1 0 0 2 2 0 0 1 0 3 0 2 2 0 0 20 1 2297.1427 P31689 P31689 4 23 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 2.984E-06 53.553 3 2 0.9148 0.91008 39.509 4 Median 1.0576 1.2397 4.686 2 0 Median 0.74492 0.63331 12.254 2 0 Median 85916000 42554000 43362000 66335000 31747000 34588000 19582000 10807000 8774400 3772 1535 3874 9950;9951;9952;9953;9954 15611;15612;15613;15614;15615;15616 15611 6 ETTYYDVLGVKPNATQEELKK ______________________________ VLGVKPNATQEELKKAYRKLALKYHPDKNP K E T K K A 1 0 1 1 0 1 3 1 0 0 2 3 0 0 1 0 3 0 2 2 0 0 21 2 2425.2377 P31689 P31689 4 24 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 0.00065993 35.748 2 0.75752 0.72907 13.43 2 Median NaN NaN NaN 0 0 Median 0.75752 0.72907 13.43 2 0 Median 7706300 4173100 3533200 0 0 0 7706300 4173100 3533200 3773 1535 3875 9955;9956 15617;15618;15619 15617 3 ETVEEQVSTTER KHKLFRIKINQIQMKETVEEQVSTTERVFQ QMKETVEEQVSTTERVFQDRQYQIDAAIVR K E T E R V 0 1 0 0 0 1 4 0 0 0 0 0 0 0 0 1 3 0 0 2 0 0 12 0 1406.6525 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 676 687 CUL4A Cullin-4A yes no 2 2.9541E-29 167.09 2 2 0.8877 0.79054 7.9391 3 Median 0.77778 0.85051 NaN 1 0 Median 0.92186 0.75745 6.0457 2 0 Median 75628000 46212000 29416000 45062000 30017000 15045000 30566000 16195000 14371000 3774 1718 3876 9957;9958;9959;9960 15620;15621;15622;15623;15624;15625;15626 15623 7 ETVIQFLER ELWLEHLENTMEEDKETVIQFLERILLTLV TMEEDKETVIQFLERILLTLVANPYSYTDK K E T E R I 0 1 0 0 0 1 2 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1133.6081 O60287 O60287 694 702 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00016983 107.57 2 1 1.2663 1.2919 12.353 2 Median 1.2663 1.2919 12.353 2 0 Median NaN NaN NaN 0 0 Median 24150000 10112000 14038000 24150000 10112000 14038000 0 0 0 3775 1392 3877 9961;9962;9963 15627;15628;15629;15630;15631 15627 5 ETVNSPAIYK RKDLMDKTQKVKVKKETVNSPAIYKFQSRR VKVKKETVNSPAIYKFQSRRKR________ K E T Y K F 1 0 1 0 0 0 1 0 0 1 0 1 0 0 1 1 1 0 1 1 0 0 10 0 1120.5764 Q9Y3A2 Q9Y3A2 237 246 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.0014063 86.136 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42937000 4261900 38675000 38675000 0 38675000 4261900 4261900 0 3776 2132 3878 9964;9965;9966 15632;15633;15634 15632 3 ETVSEESNVLCLSK ACIPIKKSDPVVSYRETVSEESNVLCLSKS RETVSEESNVLCLSKSPNKHNRLYMKARPF R E T S K S 0 0 1 0 1 0 3 0 0 0 2 1 0 0 0 3 1 0 0 2 0 0 14 0 1593.7556 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 581 594 EEF2 Elongation factor 2 yes no 2 7.1736E-10 122.7 2 2 2.6909 2.5559 31.325 4 Median 2.9521 3.3146 0.87099 2 0 Median 2.4205 1.9295 3.8757 2 0 Median 179330000 46051000 133280000 146080000 36467000 109610000 33255000 9584300 23671000 3777 1478 3879 9967;9968;9969;9970 15635;15636;15637;15638;15639;15640;15641;15642;15643 15639 9 ETVYCLNDDDETEVLK TVVDAKTLKKEDIQKETVYCLNDDDETEVL TVYCLNDDDETEVLKEDIIQGFRYGSDIVP K E T L K E 0 0 1 3 1 0 3 0 0 0 2 1 0 0 0 0 2 0 1 2 0 0 16 0 1941.8514 P13010;Q53T09 P13010 292 307 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 6.1034E-25 146.36 2 2 0.33537 0.36966 14.045 4 Linear 0.32588 0.36701 1.2233 2 0 Median 0.34782 0.28801 1.6427 2 0 Median 314070000 233440000 80636000 233850000 174320000 59535000 80222000 59122000 21100000 3778 1476 3880 9971;9972;9973;9974 15644;15645;15646;15647;15648;15649 15644 6 ETVYCLNDDDETEVLKEDIIQGFR TVVDAKTLKKEDIQKETVYCLNDDDETEVL DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ K E T F R Y 0 1 1 4 1 1 4 1 0 2 2 1 0 1 0 0 2 0 1 2 0 0 24 1 2900.3386 P13010;Q53T09 P13010 292 315 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 5.0592E-21 108.08 2 0.30884 0.26438 1.2232 2 Median NaN NaN NaN 0 0 Median 0.30884 0.26438 1.2232 2 0 Median 28283000 21405000 6877700 0 0 0 28283000 21405000 6877700 3779 1476 3881 9975;9976 15650;15651;15652;15653 15652 4 ETYDSSSLPALLFK YQDYSDVQAQEPNVKETYDSSSLPALLFKA KETYDSSSLPALLFKARTLLGAESHLRNIN K E T F K A 1 0 0 1 0 0 1 0 0 0 3 1 0 1 1 3 1 0 1 0 0 0 14 0 1569.7926 Q71F23;A8K8D2 Q71F23 380 393 CENPU Centromere protein U yes no 2 0.0016198 52.391 1 2 1.3822 1.132 30.828 3 Median 0.67724 0.67283 NaN 1 0 Median 1.4246 1.1471 1.869 2 0 Median 19968000 10478000 9490500 9567900 5809300 3758600 10400000 4668400 5731800 3780 1866 3882 9977;9978;9979 15654;15655;15656;15657;15658 15658 5 ETYEALLAR LEKRRQLSRDIGRLKETYEALLARFPNLRF DIGRLKETYEALLARFPNLRFAYKDPEKNW K E T A R F 2 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1064.5502 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 494 502 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.00016083 107.9 2 2 1.195 1.1913 23.601 4 Median 0.83319 0.9693 1.4983 2 0 Median 1.6819 1.4582 0.92838 2 0 Median 572340000 290340000 282000000 454770000 246390000 208390000 117570000 43954000 73614000 3781 69 3883 9980;9981;9982;9983 15659;15660;15661;15662;15663;15664;15665 15661 7 ETYLGPNEVLK IDHLKQKIPPALFYKETYLGPNEVLKNGMY LFYKETYLGPNEVLKNGMYCSLYEVVEKTR K E T L K N 0 0 1 0 0 0 2 1 0 0 2 1 0 0 1 0 1 0 1 1 0 0 11 0 1261.6554 A0A024R363;Q9UK61 A0A024R363 18 28 C3orf63;FAM208A Protein FAM208A no no 2 0.0015533 66.621 1 1.1524 1.1869 NaN 1 Median 1.1524 1.1869 NaN 1 0 Median NaN NaN NaN 0 0 Median 10819000 5410600 5408800 10819000 5410600 5408800 0 0 0 3782 129;2105 3884 9984 15666;15667 15666 2 EVAALCR SSTLFSALLIKCLEKEVAALCRYTPRRNIP LLIKCLEKEVAALCRYTPRRNIPPYFVALV K E V C R Y 2 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 817.41162 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 393 399 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.02091 93.593 1 0.38405 0.40432 NaN 1 Median 0.38405 0.40432 NaN 1 0 Median NaN NaN NaN 0 0 Median 39930000 28690000 11240000 39930000 28690000 11240000 0 0 0 3783 82 3885 9985 15668 15668 1 EVAATEEDVTR SPDASQLASSLSSQKEVAATEEDVTRLPSP SSQKEVAATEEDVTRLPSPTSPFSSLSQDQ K E V T R L 2 1 0 1 0 0 3 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 11 0 1218.5728 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424 A0A1P7ZIM8 589 599 LMO7 LIM domain only protein 7 yes no 2 6.168E-10 128.27 2 2.4028 2.5387 NaN 1 Median 2.4028 2.5387 NaN 1 0 Median NaN NaN NaN 0 0 Median 9083200 1118400 7964800 9083200 1118400 7964800 0 0 0 3784 640 3886 9986;9987 15669;15670;15671 15669 3 EVAEELNVNHSTVVR QLRAIIEADPLTTTREVAEELNVNHSTVVR EVAEELNVNHSTVVRHLK____________ R E V V R H 1 1 2 0 0 0 3 0 1 0 1 0 0 0 0 1 1 0 0 4 0 0 15 0 1694.8588 B9ZVV8;B4DND2;Q96H41;Q53H47 B9ZVV8 195 209 SETMAR Histone-lysine N-methyltransferase SETMAR;Histone-lysine N-methyltransferase;Transposon Hsmar1 transposase yes no 2 0.024922 28.806 1 0.99608 1.0196 NaN 1 Median 0.99608 1.0196 NaN 1 0 Median NaN NaN NaN 0 0 Median 6619900 4444500 2175400 6619900 4444500 2175400 0 0 0 3785 1011 3887 9988 15672 15672 1 EVAFFNNFLTDAK HIFNKHAEKIEEVKKEVAFFNNFLTDAKRP KKEVAFFNNFLTDAKRPALPEIKPAQPPGP K E V A K R 2 0 2 1 0 0 1 0 0 0 1 1 0 3 0 0 1 0 0 1 0 0 13 0 1514.7405 Q9BXP5;H7C3A1;Q7Z4Y3;A0A0A0MSP6 Q9BXP5 746 758 SRRT Serrate RNA effector molecule homolog yes no 2 4.3161E-06 102.53 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13814000 0 13814000 12506000 0 12506000 1307900 0 1307900 3786 2013 3888 9989;9990 15673;15674;15675 15673 3 EVASNSELVQSSR DAETWFLSKTEELNKEVASNSELVQSSRSE NKEVASNSELVQSSRSEVTELRRVLQGLEI K E V S R S 1 1 1 0 0 1 2 0 0 0 1 0 0 0 0 4 0 0 0 2 0 0 13 0 1404.6845 CON__P08779;P08779;Q16195;K7ENW6 CON__P08779 318 330 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 2 1.3579E-20 164.33 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38306000 38306000 0 38306000 38306000 0 0 0 0 + 3787 1159 3889 9991;9992 15676;15677;15678;15679 15676 4 EVATAIR GDYNGHVGLGVKCSKEVATAIRGAIILAKL GLGVKCSKEVATAIRGAIILAKLSIVPVRR K E V I R G 2 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 7 0 758.42865 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PMM9;I3L404;E9PPT0;Q8NI61;E9PM36 P15880 146 152 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2 0.011218 108.98 1 0.97244 0.99473 NaN 1 Median 0.97244 0.99473 NaN 1 0 Median NaN NaN NaN 0 0 Median 35567000 16475000 19092000 35567000 16475000 19092000 0 0 0 3788 1485 3890 9993 15680 15680 1 EVATNSELVQSGK DAEEWFFTKTEELNREVATNSELVQSGKSE NREVATNSELVQSGKSEISELRRTMQNLEI R E V G K S 1 0 1 0 0 1 2 1 0 0 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1360.6834 CON__P02533;P02533;A0A024R1X6;CON__Q04695;Q04695;F5GWP8;Q14666;K7ESE1 CON__P02533 316 328 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 1.4773E-24 162.38 2 2 0.15784 0.12653 64.239 3 Median 0.037326 0.04225 NaN 1 0 Median 0.16032 0.1285 2.1886 2 0 Median 156830000 148150000 8680800 116410000 113370000 3041500 40423000 34784000 5639300 + 3789 1150;1168 3891 9994;9995;9996;9997 15681;15682;15683;15684;15685;15686;15687 15681 7 EVCEQNQQLLR LSTLKCQDEELEKMREVCEQNQQLLRENEI EKMREVCEQNQQLLRENEIIKQKLTLLQVA R E V L R E 0 1 1 0 1 3 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1415.6827 Q59HG1;O95239;B3KNC0 Q59HG1 978 988 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 1.8465E-41 199.29 2 2 1.1423 1.1023 19.463 4 Median 0.81387 0.93016 3.1295 2 0 Median 1.5759 1.3 2.4455 2 0 Median 221870000 122150000 99719000 200800000 112690000 88109000 21067000 9457300 11609000 3790 1803 3892 9998;9999;10000;10001 15688;15689;15690;15691;15692;15693;15694 15691 7 EVCGFAPYER GRLTKHTKFVRDMIREVCGFAPYERRAMEL RDMIREVCGFAPYERRAMELLKVSKDKRAL R E V E R R 1 1 0 0 1 0 2 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 10 0 1226.539 Q9Y3U8;J3QSB5 Q9Y3U8 46 55 RPL36 60S ribosomal protein L36 yes no 2 1.0257E-11 138.4 2 2 0.7749 0.76141 23.193 4 Median 0.80325 0.92729 1.7636 2 0 Median 0.73255 0.62131 2.6475 2 0 Median 418490000 230330000 188150000 371200000 202430000 168760000 47290000 27899000 19390000 3791 2140 3893 10002;10003;10004;10005 15695;15696;15697;15698;15699;15700;15701;15702 15696 8 EVDATSPAPSTSSTVK KLKVKGPALSRKRKKEVDATSPAPSTSSTV VDATSPAPSTSSTVKTEGAEATPGAQKRKK K E V V K T 2 0 0 1 0 0 1 0 0 0 0 1 0 0 2 4 3 0 0 2 0 0 16 0 1575.7628 D3DUZ3;Q16666;H3BM18;X6RHM1 D3DUZ3 105 120 IFI16 Gamma-interferon-inducible protein 16 yes no 2 0.00015189 64.55 1 2 1.2128 0.95583 1.7113 2 Median NaN NaN NaN 0 0 Median 1.2128 0.95583 1.7113 2 0 Median 13994000 9517900 4475800 5498600 5498600 0 8495100 4019300 4475800 3792 1196 3894 10006;10007;10008 15703;15704;15705;15706 15704 4 EVDDLGPEVGDIK TGQEEIDEACKRIKREVDDLGPEVGDIKII KREVDDLGPEVGDIKIIPLYSTLPPQQQQR R E V I K I 0 0 0 3 0 0 2 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1384.6722 O43143;B4E0S6 O43143 372 384 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 3.1697E-06 108.7 2 2 1.1976 1.068 3.1747 4 Median 1.0988 1.0947 0.56701 2 0 Median 1.2855 1.0377 1.1553 2 0 Median 64217000 30988000 33229000 51762000 25651000 26110000 12455000 5336000 7118900 3793 1379 3895 10009;10010;10011;10012 15707;15708;15709;15710;15711;15712;15713 15710 7 EVDDLTAELK DSVLRTEKEIKDTEKEVDDLTAELKSLEDK KDTEKEVDDLTAELKSLEDKAAEVVKNTNA K E V L K S 1 0 0 2 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1131.5659 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 954 963 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 3.6561E-12 146.23 2 2 1.2413 1.2421 23.698 4 Median 0.86234 1.0115 0.75804 2 0 Median 1.7956 1.5247 0.71626 2 0 Median 750980000 377020000 373960000 628150000 332900000 295250000 122830000 44121000 78708000 3794 2070 3896 10013;10014;10015;10016 15714;15715;15716;15717;15718;15719;15720;15721 15714 8 EVDEDTTVTIPSAVYVAQLYHQVSK EELKEIEADLERQEKEVDEDTTVTIPSAVY PSAVYVAQLYHQVSKIEWDYECEPGMVKGI K E V S K I 2 0 0 2 0 2 2 0 1 1 1 1 0 0 1 2 3 0 2 5 0 0 25 0 2791.3916 B4E086;K7EJH0;K7EMX1;Q8NBT2 B4E086 67 91 SPC24 Kinetochore protein Spc24 yes no 3 0.00044592 31.819 1 2 1.029 0.88928 5.0703 3 Plateau 0.87574 0.88928 NaN 1 0 Median 1.0556 0.84588 5.8928 2 0 Median 25118000 12392000 12726000 12785000 6558900 6226100 12333000 5833500 6499900 3795 1061 3897 10017;10018;10019 15722;15723;15724;15725;15726 15725 5 EVDEISPEDDQR LEPRVGAGAGAAPFREVDEISPEDDQRANR PFREVDEISPEDDQRANRTLFLGNLDITVT R E V Q R A 0 1 0 3 0 1 3 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 12 0 1430.6161 A0A087WWP4;Q96T37 A0A087WWP4 316 327 RBM15 Putative RNA-binding protein 15 yes no 2 2.076E-08 112.36 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2267600 0 2267600 2267600 0 2267600 0 0 0 3796 427 3898 10020 15727 15727 1 EVDEQMLAIQSK YLTVATVFRGPMSMKEVDEQMLAIQSKNSS SMKEVDEQMLAIQSKNSSYFVEWIPNNVKV K E V S K N 1 0 0 1 0 2 2 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 12 0 1389.681 Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 Q9BUF5 325 336 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 2.036E-05 93.096 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3797 2004;502 3899 10021;10022 15728;15729 15729 347 2 EVDEQMLNVQNK YLTVAAVFRGRMSMKEVDEQMLNVQNKNSS SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT K E V N K N 0 0 2 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 12 0 1445.682 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q1KSF8;Q6P602;A4UCT2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2 Q5JP53 307 318 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB2A;TUBB2B;DKFZp566F223 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2 1.0541E-162 280.96 6 7 1.4792 2.4347 56.36 11 Plateau 2.0306 2.3776 28.233 6 0 Median 0.82401 0.66186 34.407 5 0 Median 1224700000 407210000 817490000 1137400000 366640000 770780000 87278000 40572000 46706000 3798 1452;1660;1723 3900;3901 10023;10024;10025;10026;10027;10028;10029;10030;10031;10032;10033;10034;10035 15730;15731;15732;15733;15734;15735;15736;15737;15738;15739;15740;15741;15742;15743;15744;15745;15746;15747;15748;15749;15750;15751 15736 1155 22 EVDGLDVSK ANAIEEVNLAYENVKEVDGLDVSKEGTEAW AYENVKEVDGLDVSKEGTEAWEAAMKRYDE K E V S K E 0 0 0 2 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 960.47639 Q14204 Q14204 532 540 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00085356 89.355 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9209200 0 9209200 9209200 0 9209200 0 0 0 3799 1729 3902 10036 15752 15752 1 EVDIGIPDATGR NSIDPALRRFGRFDREVDIGIPDATGRLEI FDREVDIGIPDATGRLEILQIHTKNMKLAD R E V G R L 1 1 0 2 0 0 1 2 0 2 0 0 0 0 1 0 1 0 0 1 0 0 12 0 1241.6252 V9HW80;P55072;Q96IF9;Q0IIN5 V9HW80 366 377 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 2 0.0042139 54.066 1 0.78258 0.68205 NaN 1 Median NaN NaN NaN 0 0 Median 0.78258 0.68205 NaN 1 0 Median 1486900 700230 786640 0 0 0 1486900 700230 786640 3800 1613 3903 10037 15753 15753 1 EVDNLYNIEILR IRIKQIESDRQNLLKEVDNLYNIEILRLPK LLKEVDNLYNIEILRLPKALREMNWLDYFA K E V L R L 0 1 2 1 0 0 2 0 0 2 2 0 0 0 0 0 0 0 1 1 0 0 12 0 1489.7777 Q53HL2;A8K7A2 Q53HL2 49 60 CDCA8 Borealin yes no 2 2.9541E-29 167.09 3 2 1.1807 1.1943 5.9138 4 Median 0.96328 1.1315 5.7775 2 0 Median 1.4141 1.2281 2.0887 2 0 Median 1047800000 498210000 549590000 853630000 416780000 436840000 194170000 81427000 112740000 3801 1789 3904 10038;10039;10040;10041;10042 15754;15755;15756;15757;15758;15759;15760;15761;15762;15763;15764;15765 15759 12 EVDNTLSLEHQK FTLDVVLALLELPEREVDNTLSLEHQKFLK PEREVDNTLSLEHQKFLKHKFLVQEIMFDR R E V Q K F 0 0 1 1 0 1 2 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1411.6943 P42695;G3V1A9;E9PKK4 P42695 426 437 NCAPD3 Condensin-2 complex subunit D3 yes no 2 7.2093E-11 115.78 3 1 1.9338 1.5813 NaN 1 Median NaN NaN NaN 0 0 Median 1.9338 1.5813 NaN 1 0 Median 8081200 676260 7405000 6207300 0 6207300 1873900 676260 1197600 3802 1565 3905 10043;10044;10045;10046 15766;15767;15768;15769 15768 4 EVDYSDSLTEK EEEEKMFGRGSRHRKEVDYSDSLTEKQWLK RHRKEVDYSDSLTEKQWLKAIEEGTLEEIE K E V E K Q 0 0 0 2 0 0 2 0 0 0 1 1 0 0 0 2 1 0 1 1 0 0 11 0 1284.5721 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;B4E0F1;B4DSI8;B3KNW7;K7EP28 A7E2E1 1376 1386 SMARCA4 Transcription activator BRG1 yes no 2 5.2696E-08 117.01 2 2 1.2459 1.1322 37.492 4 Median 0.77106 0.79958 18.364 2 0 Median 1.8825 1.484 7.4483 2 0 Median 70171000 36483000 33688000 62051000 33488000 28563000 8120000 2995900 5124100 3803 695 3906 10047;10048;10049;10050 15770;15771;15772;15773;15774 15771 5 EVEAQLPEK LHKVLRPFLLRRLKKEVEAQLPEKVEYVIK LRRLKKEVEAQLPEKVEYVIKCDMSALQRV K E V E K V 1 0 0 0 0 1 3 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 9 0 1041.5342 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8;B3KNW7 A7E2E1 983 991 SMARCA4 Transcription activator BRG1 yes no 2 0.00092483 92.439 2 2 0.9576 1.036 27.129 3 Median 0.93126 1.0122 3.2822 2 0 Median 2.0436 1.6166 NaN 1 0 Median 83129000 41551000 41578000 76156000 39639000 36517000 6973200 1912500 5060700 3804 695 3907 10051;10052;10053;10054 15775;15776;15777;15778;15779;15780;15781 15777 7 EVEAVIPDHCIFASNTSALPISEIAAVSK EAVFEDLSLKHRVLKEVEAVIPDHCIFASN NTSALPISEIAAVSKRPEKVIGMHYFSPVD K E V S K R 5 0 1 1 1 0 3 0 1 4 1 1 0 1 2 4 1 0 0 3 0 0 29 0 3067.5536 E9KL44;P40939;B4DRH6;B4DDZ5 E9KL44 461 489 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 3 1.2994E-10 50.029 2 1.2532 1.2966 9.2288 2 Median 1.2532 1.2966 9.2288 2 0 Median NaN NaN NaN 0 0 Median 35266000 17505000 17760000 35266000 17505000 17760000 0 0 0 3805 1228 3908 10055;10056 15782;15783;15784 15784 3 EVEEISLLQPQVEESVLNLGK VLFEHAVGYALLALKEVEEISLLQPQVEES LLQPQVEESVLNLGKFHSIVRLVAFCPFAS K E V G K F 0 0 1 0 0 2 5 1 0 1 4 1 0 0 1 2 0 0 0 3 0 0 21 0 2352.2424 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 21 41 NOP56 Nucleolar protein 56 yes no 2 1.8981E-34 122.78 3 1 0.9025 0.86234 8.8587 4 Linear 0.76848 0.88538 10.566 3 0 Plateau 1.0065 0.87031 NaN 1 0 Median 636570000 337560000 299000000 407750000 233310000 174440000 228820000 104250000 124570000 3806 785 3909 10057;10058;10059;10060 15785;15786;15787;15788;15789;15790;15791 15791 6 EVEIQSHLR KAQLEKAGVEHQLRREVEIQSHLRHPNILR EHQLRREVEIQSHLRHPNILRLYGYFHDAT R E V L R H 0 1 0 0 0 1 2 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1109.5829 O14965;B4DX16;A3KFJ0;B2R6Z3;Q5QPD4 O14965 181 189 AURKA Aurora kinase A yes no 2;3 0.0028277 79.713 3 1 1.2217 1.2179 32.808 3 Plateau 1.1757 1.1926 2.9698 2 0 Median 0.77217 0.6764 NaN 1 0 Median 24731000 7583900 17148000 22886000 6589100 16296000 1845900 994780 851100 3807 1369 3910 10061;10062;10063;10064 15792;15793;15794;15795 15794 4 EVEIVASSDSSISSK LSGDDSSTCIGILAKEVEIVASSDSSISSK EVEIVASSDSSISSKARGSNKVKIQPVAKY K E V S K A 1 0 0 1 0 0 2 0 0 2 0 1 0 0 0 6 0 0 0 2 0 0 15 0 1536.7519 Q6P2E9;B7Z7V8 Q6P2E9 97 111 EDC4 Enhancer of mRNA-decapping protein 4 yes no 2 9.0085E-32 143.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5002400 0 5002400 5002400 0 5002400 0 0 0 3808 1853 3911 10065 15796;15797 15796 2 EVELVSE DSDTTKKKKKKKKAKEVELVSE________ KKKKKKAKEVELVSE_______________ K E V S E - 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 7 0 803.39126 O60832 O60832 508 514 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 1 4.0235E-27 176.25 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13821000 0 0 13821000 0 0 0 0 0 3809 1398 3912 10066 15798 15798 1 EVEQFDVATHLQTAPELVDR GKQQNKHVFFFDTKKEVEQFDVATHLQTAP DVATHLQTAPELVDRVFNRPRIETLQKEKV K E V D R V 2 1 0 2 0 2 3 0 1 0 2 0 0 1 1 0 2 0 0 3 0 0 20 0 2296.1335 Q9Y3A2 Q9Y3A2 145 164 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2;3 3.1258E-41 158.74 3 2 0.95943 0.95755 14.638 4 Median 0.95548 1.0795 2.2659 2 0 Median 0.97619 0.84086 3.6936 2 0 Median 331830000 172410000 159420000 264920000 138340000 126570000 66913000 34067000 32847000 3810 2132 3913 10067;10068;10069;10070;10071 15799;15800;15801;15802;15803;15804;15805;15806;15807 15800 9 EVEVEVESMDK SEEATLFTKELVLQREVEVEVESMDKAGNF VLQREVEVEVESMDKAGNFIGWLHIDGANL R E V D K A 0 0 0 1 0 0 4 0 0 0 0 1 1 0 0 1 0 0 0 3 0 0 11 0 1292.5806 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299 A0A140VK49 593 603 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 3.2079E-06 110.14 2 1.7515 1.7978 0.052691 2 Median 1.7515 1.7978 0.052691 2 0 Median NaN NaN NaN 0 0 Median 41165000 15094000 26071000 41165000 15094000 26071000 0 0 0 3811 618 3914 10072;10073 15808;15809 15809 470 2 EVEVIGGADK CFQEAAYTKRLGTEKEVEVIGGADKYHSVC LGTEKEVEVIGGADKYHSVCRLCYFKKASG K E V D K Y 1 0 0 1 0 0 2 2 0 1 0 1 0 0 0 0 0 0 0 2 0 0 10 0 1015.5186 B5BUF9;B5BU32;A0A024R8N6;P04183 B5BUF9 171 180 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2 0.00046099 72.607 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3812 252 3915 10074 15810 15810 1 EVFEMATR FGYMECSAKTKDGVREVFEMATRAALQARR KTKDGVREVFEMATRAALQARRGKKKSGCL R E V T R A 1 1 0 0 0 0 2 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 8 0 981.45897 B4DKN9;Q5JR08;A0A024R324;A0A024R0I3;P61586;P08134;Q9BVT0;A0A0B6XK12 B4DKN9 149 156 RHOC;RHOA;hCG_2043376;ARHA Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 2 0.014148 51.736 3 1.417 1.4652 NaN 1 Median 1.417 1.4652 NaN 1 0 Median NaN NaN NaN 0 0 Median 26549000 9715100 16834000 26549000 9715100 16834000 0 0 0 3813 48 3916 10075;10076;10077 15811;15812;15813 15813 27 3 EVFGDDSEISK HSKSSSDRSRKRELKEVFGDDSEISKESSG RELKEVFGDDSEISKESSGVKKRRIPRFEE K E V S K E 0 0 0 2 0 0 2 1 0 1 0 1 0 1 0 2 0 0 0 1 0 0 11 0 1224.551 B4DLS8;Q53GV6;B2R791;O43395 B4DLS8 79 89 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 2 0.0065062 63.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3814 848 3917 10078 15814 15814 1 EVFSMAGVVVR FVANLDYKVGWKKLKEVFSMAGVVVRADIL KKLKEVFSMAGVVVRADILEDKDGKSRGIG K E V V R A 1 1 0 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 4 0 0 11 0 1192.6274 M0QZM1;P52272;A0A087X0X3;Q59ES8;Q7KYM9;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7 P52272 222 232 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M no no 2 2.1044E-08 118.5 2 2 1.4225 1.3251 49.946 4 Median 1.9483 2.1259 15.353 2 0 Median 1.068 0.90764 2.0221 2 0 Median 98295000 36473000 61822000 92443000 33979000 58464000 5852000 2494000 3358000 3815 1599;1354 3918;3919 10079;10080;10081;10082 15815;15816;15817;15818;15819;15820 15815 1012 6 EVFTSSSSSSSR HLSSQQASGQSYSSREVFTSSSSSSSRQTR SSREVFTSSSSSSSRQTRPILKEQSSSSFS R E V S R Q 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 7 1 0 0 1 0 0 12 0 1259.563 CON__P08779;P08779;Q16195 CON__P08779 442 453 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 2 3.8271E-13 121.83 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4439100 4439100 0 4439100 4439100 0 0 0 0 + 3816 1159 3920 10083 15821 15821 1 EVGEHLVSIK KRLPNNHIGISFIPREVGEHLVSIKKNGNH SFIPREVGEHLVSIKKNGNHVANSPVSIMV R E V I K K 0 0 0 0 0 0 2 1 1 1 1 1 0 0 0 1 0 0 0 2 0 0 10 0 1109.6081 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1970 1979 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.022046 46.001 1 1.5616 1.611 NaN 1 Median 1.5616 1.611 NaN 1 0 Median NaN NaN NaN 0 0 Median 9649700 3357400 6292300 9649700 3357400 6292300 0 0 0 3817 1402 3921 10084 15822 15822 1 EVGETLLYYGCR IGFIQERAWLRQQGKEVGETLLYYGCRRSD QGKEVGETLLYYGCRRSDEDYLYREELAQF K E V C R R 0 1 0 0 1 0 2 2 0 0 2 0 0 0 0 0 1 0 2 1 0 0 12 0 1458.6813 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;E7EMD0;B4DDH3;B4DKM8 B2R6E5 559 570 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.00090687 64.04 2 1.0217 1.0664 NaN 1 Median 1.0217 1.0664 NaN 1 0 Median NaN NaN NaN 0 0 Median 13284000 7306200 5978300 13284000 7306200 5978300 0 0 0 3818 719 3922 10085;10086 15823;15824 15823 2 EVGSIIGK ______________________________ ______________________________ K E V G K K 0 0 0 0 0 0 1 2 0 2 0 1 0 0 0 1 0 0 0 1 0 0 8 0 801.45962 Q53SS8;Q15365;F8VTZ0;H3BSP4;C9K0A2;F8WC71;C9IZV9;C9J7A9;C9JSA6;C9J5V4;C9JTY5;C9JZY3;C9J0A4;F6TJN8;Q7Z4Y9;A0A024R320;P57723;H3BRU6;F8VZX2;F8W0G4;F8W1G6;J3QT27;Q5MJP6;E9PFP8;P57721;Q15366;B4DLC0 Q15366 5 12 PCBP1;PCBP2;PCBP4;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 4;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2 no no 2 0.017078 60.682 2 2.4935 2.8701 0.45687 2 Median 2.4935 2.8701 0.45687 2 0 Median NaN NaN NaN 0 0 Median 456980000 120750000 336230000 456980000 120750000 336230000 0 0 0 3819 1263;1760;1759 3923 10087;10088 15825;15826;15827 15825 3 EVGSPPLDPTER AYLESSEALYNQYMKEVGSPPLDPTERFLP YMKEVGSPPLDPTERFLPEEEKLTEQERSK K E V E R F 0 1 0 1 0 0 2 1 0 0 1 0 0 0 3 1 1 0 0 1 0 0 12 0 1295.6357 A0A1B0GV79;A0A1B0GW21;A0A1B0GTE6;A0A0D9SFK7;A0A1B0GUH6;A0A1B0GUA3;Q96EK5 A0A1B0GV79 74 85 KIF1BP;KIAA1279 KIF1-binding protein yes no 2 0.006403 60.398 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6627000 0 6627000 6627000 0 6627000 0 0 0 3820 525 3924 10089 15828 15828 1 EVIAVSCGPAQCQETIR AVEEAVRLKEKKLVKEVIAVSCGPAQCQET IAVSCGPAQCQETIRTALAMGADRGIHVEV K E V I R T 2 1 0 0 2 2 2 1 0 2 0 0 0 0 1 1 1 0 0 2 0 0 17 0 1916.9084 P38117 P38117 60 76 ETFB Electron transfer flavoprotein subunit beta yes yes 2 7.4583E-19 123.95 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36615000 0 36615000 36615000 0 36615000 0 0 0 3821 1551 3925 10090;10091;10092 15829;15830;15831 15829 3 EVIDLLK PLMDNADSSPVVDKREVIDLLKPDQVEGIQ SSPVVDKREVIDLLKPDQVEGIQKSGTKKL R E V L K P 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 A0A024R663;Q86UP2;G8JLP4;Q9Y4F3 A0A024R663 250 256 KTN1;KIAA0430 Kinectin;Meiosis arrest female protein 1 yes no 2 0.045012 60.788 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3929700 3929700 0 3929700 3929700 0 0 0 0 3822 197 3926 10093 15832 15832 1 EVIDLLKPDQVEGIQK PLMDNADSSPVVDKREVIDLLKPDQVEGIQ VIDLLKPDQVEGIQKSGTKKLKTETDKENA R E V Q K S 0 0 0 2 0 2 2 1 0 2 2 2 0 0 1 0 0 0 0 2 0 0 16 1 1823.004 A0A024R663;Q86UP2 A0A024R663 250 265 KTN1 Kinectin yes no 3 0.010089 36.597 2 0.57783 0.49476 8.6344 2 Median NaN NaN NaN 0 0 Median 0.57783 0.49476 8.6344 2 0 Median 11426000 7892400 3533300 0 0 0 11426000 7892400 3533300 3823 197 3927 10094;10095 15833;15834 15834 0 EVIELPLTNPELFQR YSEIGGLSEQIRELREVIELPLTNPELFQR EVIELPLTNPELFQRVGIIPPKGCLLYGPP R E V Q R V 0 1 1 0 0 1 3 0 0 1 3 0 0 1 2 0 1 0 0 1 0 0 15 0 1796.9672 V9HW24;A0A087X2I1;P62333;H0YJC0;B4DR91;H0YJS8 V9HW24 147 161 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 1.5138E-07 109.6 2 2.1973 2.3811 5.46 2 Median 2.1973 2.3811 5.46 2 0 Median NaN NaN NaN 0 0 Median 85216000 26610000 58606000 85216000 26610000 58606000 0 0 0 3824 454 3928 10096;10097 15835;15836;15837;15838;15839;15840 15840 6 EVINRPFTNESLQPHALGPVK YLDTVSALNFAARSKEVINRPFTNESLQPH FTNESLQPHALGPVKLSQKELLGPPEAKRA K E V V K L 1 1 2 0 0 1 2 1 1 1 2 1 0 1 3 1 1 0 0 2 0 0 21 1 2345.2492 Q14807;A0A024R632;H3BRB3 Q14807 367 387 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3;4 5.5111E-08 65.954 3 1.4649 1.2398 8.2801 3 Median NaN NaN NaN 0 0 Median 1.4649 1.2398 8.2801 3 0 Median 22932000 9002400 13930000 0 0 0 22932000 9002400 13930000 3825 1745 3929 10098;10099;10100 15841;15842;15843;15844;15845 15845 5 EVIPVNVPEAQEEMK VIDPVAPRYVALLKKEVIPVNVPEAQEEMK EVIPVNVPEAQEEMKEVAKHPKNPEVGLKP K E V M K E 1 0 1 0 0 1 4 0 0 1 0 1 1 0 2 0 0 0 0 3 0 0 15 0 1710.8498 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 514 528 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 7.8731E-05 78.692 2 3.1905 3.4327 5.2416 2 Median 3.1905 3.4327 5.2416 2 0 Median NaN NaN NaN 0 0 Median 72539000 18052000 54486000 72539000 18052000 54486000 0 0 0 3826 1454 3930 10101;10102 15846;15847 15847 1159 2 EVIQALHPETLISCQSQFK DRSSNLRGECTPTQREVIQALHPETLISCQ ALHPETLISCQSQFKPAVFDFPSQDVFTVE R E V F K P 1 0 0 0 1 3 2 0 1 2 2 1 0 1 1 2 1 0 0 1 0 0 19 0 2227.1307 Q8TEM1 Q8TEM1 1598 1616 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.0031682 30.094 1 1 0.82878 0.77903 50.755 2 Median 1.0594 1.1154 NaN 1 0 Median 0.64839 0.54411 NaN 1 0 Median 26016000 8046500 17970000 23840000 7045300 16795000 2175800 1001200 1174600 3827 1937 3931 10103;10104 15848;15849;15850 15849 2 EVITAQDTVIK KESVNKAQEEVTKQKEVITAQDTVIKAKYA TKQKEVITAQDTVIKAKYAEVAKHKEQNND K E V I K A 1 0 0 1 0 1 1 0 0 2 0 1 0 0 0 0 2 0 0 2 0 0 11 0 1215.6711 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 880 890 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.3053E-08 123.35 2 2 1.2539 1.2115 22.965 4 Median 0.8656 0.99142 0.85854 2 0 Median 1.7911 1.4756 0.38948 2 0 Median 437220000 215740000 221480000 366680000 190780000 175910000 70537000 24960000 45577000 3828 69 3932 10105;10106;10107;10108 15851;15852;15853;15854;15855;15856;15857;15858;15859;15860 15852 10 EVKEEIDPDEEESAK KGKSGPNTQNEDIEKEVKEEIDPDEEESAK EVKEEIDPDEEESAKKKHLDKKRKLKEMFD K E V A K K 1 0 0 2 0 0 6 0 0 1 0 2 0 0 1 1 0 0 0 1 0 0 15 1 1745.7843 Q14692 Q14692 808 822 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2;3 0.0057075 44.616 2 1.5662 1.3487 2.4629 2 Median NaN NaN NaN 0 0 Median 1.5662 1.3487 2.4629 2 0 Median 12064000 4488500 7575000 0 0 0 12064000 4488500 7575000 3829 1742 3933 10109;10110 15861;15862 15861 2 EVLAELEALER IRSYLTEQVNQDLPKEVLAELEALERRVHK DLPKEVLAELEALERRVHKM__________ K E V E R R 2 1 0 0 0 0 4 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 11 0 1270.6769 H0YML5;B4DW73;Q6IB91;A0A0S2Z430;Q16822;A0A0S2Z4C0 H0YML5 459 469 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 2 0.0088364 60.518 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3830 556 3934 10111 15863 15863 1 EVLASQLLVLTGQR VDHLGEEAILQVHDKEVLASQLLVLTGQRL KEVLASQLLVLTGQRLAHALLHTQTKEGME K E V Q R L 1 1 0 0 0 2 1 1 0 0 4 0 0 0 0 1 1 0 0 2 0 0 14 0 1525.8828 B3KNG8;Q9H2M9 B3KNG8 544 557 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes no 2 4.8558E-11 117.98 2 1 2.0104 1.9029 20.145 2 Median 2.136 2.1942 NaN 1 0 Median 1.8922 1.6502 NaN 1 0 Median 8836000 2365600 6470400 7368600 2007200 5361400 1467400 358450 1109000 3831 913 3935 10112;10113;10114 15864;15865;15866 15864 3 EVLCPESQSPNGVR WEESRIKVFLDVLMKEVLCPESQSPNGVRF KEVLCPESQSPNGVRFHFIDIYLDELSKVG K E V V R F 0 1 1 0 1 1 2 1 0 0 1 0 0 0 2 2 0 0 0 2 0 0 14 0 1570.741 Q14684;Q6PJM8 Q14684 152 165 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 3.5297E-05 94.363 3 2 1.5967 1.3391 36.178 3 Median 0.87197 0.86302 NaN 1 0 Median 1.8263 1.539 19.672 2 0 Median 19520000 9055100 10465000 12347000 6547300 5799900 7172400 2507800 4664600 3832 1740 3936 10115;10116;10117;10118;10119 15867;15868;15869;15870;15871;15872;15873 15868 7 EVLEGLEYLHK KSGVLDESTIATILREVLEGLEYLHKNGQI TILREVLEGLEYLHKNGQIHRDVKAGNILL R E V H K N 0 0 0 0 0 0 3 1 1 0 3 1 0 0 0 0 0 0 1 1 0 0 11 0 1328.6976 A0A024R2M7;O95747;C9JIG9 A0A024R2M7 129 139 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 0.0017877 80.755 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12407000 0 12407000 12407000 0 12407000 0 0 0 3833 117 3937 10120 15874 15874 1 EVLLEAQDMAVR AQLEFNDKKGAKIIKEVLLEAQDMAVRDHN IIKEVLLEAQDMAVRDHNVEFRSNLYIAES K E V V R D 2 1 0 1 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 12 0 1372.7021 E7ESL0;J3KQY1;Q9NWU5 E7ESL0 119 130 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 9.9806E-05 84.17 1 1.0943 1.1034 NaN 1 Median 1.0943 1.1034 NaN 1 0 Median NaN NaN NaN 0 0 Median 15621000 9835500 5786000 15621000 9835500 5786000 0 0 0 3834 1222 3938 10121 15875;15876;15877 15876 931 3 EVLLPEVGAK LPLVSLFFYVVTDGKEVLLPEVGAKGQLKF VTDGKEVLLPEVGAKGQLKFISGHTSELGN K E V A K G 1 0 0 0 0 0 2 1 0 0 2 1 0 0 1 0 0 0 0 2 0 0 10 0 1053.607 Q58F09;Q13724;C9J8D4;C9JDQ1 Q58F09 215 224 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.04172 38.086 1 0.66888 0.52577 NaN 1 Median NaN NaN NaN 0 0 Median 0.66888 0.52577 NaN 1 0 Median 2270400 1407300 863060 0 0 0 2270400 1407300 863060 3835 1720 3939 10122 15878 15878 1 EVLLQTFLDDTSPGDK AIQALRKMELSDEVREVLLQTFLDDTSPGD VLLQTFLDDTSPGDKRLAAYLMLMGSPSQS R E V D K R 0 0 0 3 0 1 1 1 0 0 3 1 0 1 1 1 2 0 0 1 0 0 16 0 1776.8782 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 539 554 yes yes 2 0.00039919 63.727 1 0.32029 0.31628 NaN 1 Median 0.32029 0.31628 NaN 1 0 Median NaN NaN NaN 0 0 Median 9324500 6453000 2871400 9324500 6453000 2871400 0 0 0 + 3836 1146 3940 10123 15879 15879 1 EVLNAVK RLATSVLKDEKSNLKEVLNAVKELELAHRY KDEKSNLKEVLNAVKELELAHRYFSYLSKV K E V V K E 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 7 0 771.44905 A8K6X9;Q6PD62 A8K6X9 778 784 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.032615 65.263 2 2.0487 2.0145 NaN 1 Median 2.0487 2.0145 NaN 1 0 Median NaN NaN NaN 0 0 Median 43734000 8612400 35121000 43734000 8612400 35121000 0 0 0 3837 765 3941 10124;10125 15880;15881 15880 2 EVLNEEDEVQPNGK YAKNKFKNKRLLGTREVLNEEDEVQPNGKI REVLNEEDEVQPNGKIFKKVILGQYNWLSY R E V G K I 0 0 2 1 0 1 4 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 14 0 1598.7424 B3KN05;B2RBE0;A0A024R497;O95573 B3KN05 98 111 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 2.2436E-09 133.89 2 1.8386 1.8674 23.1 2 Median 1.8386 1.8674 23.1 2 0 Median NaN NaN NaN 0 0 Median 26486000 13154000 13332000 26486000 13154000 13332000 0 0 0 3838 150 3942 10126;10127 15882;15883;15884 15882 3 EVLPSTR SPAKIHVFYIDYGNREVLPSTRLGTLSPAF FYIDYGNREVLPSTRLGTLSPAFSTRVLPA R E V T R L 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 7 0 800.43922 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299 A0A140VK49 770 776 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.029153 87.284 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13810000 13810000 0 13810000 13810000 0 0 0 0 3839 618 3943 10128 15885 15885 1 EVLQALEELAVNYDQK NRLQAENDASKEEVKEVLQALEELAVNYDQ VLQALEELAVNYDQKSQEVEDKTKEYELLS K E V Q K S 2 0 1 1 0 2 3 0 0 0 3 1 0 0 0 0 0 0 1 2 0 0 16 0 1860.9469 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89;Q57Z91;A0A0G2JMZ6;A1L179;J3KNA1;B7Z2M7;B2RCP3;O60282;Q12840 V9HW29 490 505 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12;KIF5C;KIF5A Kinesin-like protein;Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A no no 2 2.4872E-06 85.271 2 1.6942 1.7219 NaN 1 Median 1.6942 1.7219 NaN 1 0 Median NaN NaN NaN 0 0 Median 9213400 2161000 7052400 9213400 2161000 7052400 0 0 0 3840 1186 3944 10129;10130 15886;15887;15888;15889;15890 15889 5 EVLSLLQEK SRRARPRREVIQNSKEVLSLLQEKNPAFKP VIQNSKEVLSLLQEKNPAFKPVLAIIQAGD K E V E K N 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 1057.6019 A0A087WVM4;B7ZM99;Q6UB35;H0Y327 A0A087WVM4 18 26 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.0010561 90.601 2 1.6487 1.7196 5.2819 2 Median 1.6487 1.7196 5.2819 2 0 Median NaN NaN NaN 0 0 Median 25095000 7096100 17999000 25095000 7096100 17999000 0 0 0 3841 418 3945 10131;10132 15891;15892 15891 2 EVLSMDDEIQK KEIMLGLKRLPDLIKEVLSMDDEIQKLATE DLIKEVLSMDDEIQKLATELYHQKSVLIMG K E V Q K L 0 0 0 2 0 1 2 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 11 0 1305.6122 Q06210 Q06210 537 547 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.00087854 70.908 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12430000 0 12430000 12430000 0 12430000 0 0 0 3842 1688 3946 10133 15893 15893 1507 1 EVLVVNSQGEISR AAAAHEANKLFKEGKEVLVVNSQGEISRLS GKEVLVVNSQGEISRLSTKKEVIMKGNINN K E V S R L 0 1 1 0 0 1 2 1 0 1 1 0 0 0 0 2 0 0 0 3 0 0 13 0 1428.7573 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 672 684 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00021605 69.721 1 2 1.6255 1.409 54.466 3 Median 0.51156 0.55395 NaN 1 0 Median 1.6524 1.4227 1.3663 2 0 Median 35214000 19836000 15378000 27376000 16917000 10459000 7837500 2918700 4918700 3843 1224 3947 10134;10135;10136 15894;15895;15896 15895 3 EVMFTEEDVK LDFLRGGDLFTRLSKEVMFTEEDVKFYLAE TRLSKEVMFTEEDVKFYLAELALTLDHLHS K E V V K F 0 0 0 1 0 0 3 0 0 0 0 1 1 1 0 0 1 0 0 2 0 0 10 0 1225.5537 B4DKZ2;B4DG22;B7ZB17;P51812;B1AXG1;B7Z2K7;F2Z2J1;Q15349;D6RHW7;E9PMM7;D6R910;B7Z3B5;E9PGT3;Q15418 B4DKZ2 133 142 RPS6KA3;RPS6KA2;RPS6KA1 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-1 no no 2 0.0027407 62.823 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3844 971;1235 3948 10137;10138 15897;15898 15897 779 2 EVMLQNGETPK VVEDKEEKKEEEEKKEVMLQNGETPKDLND EEKKEVMLQNGETPKDLNDEKQKKNIKQRF K E V P K D 0 0 1 0 0 1 2 1 0 0 1 1 1 0 1 0 1 0 0 1 0 0 11 0 1244.6071 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1664 1674 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 7.5769E-05 94.692 1 0.97547 0.99032 NaN 1 Median 0.97547 0.99032 NaN 1 0 Median NaN NaN NaN 0 0 Median 18124000 9520100 8603900 18124000 9520100 8603900 0 0 0 3845 515 3949 10139 15899;15900 15900 371 2 EVMSLHEASR EGSGCIAGVTVPSTREVMSLHEASRKELIP VPSTREVMSLHEASRKELIPAAFATWLLEA R E V S R K 1 1 0 0 0 0 2 0 1 0 1 0 1 0 0 2 0 0 0 1 0 0 10 0 1157.5499 A0A075B730;A0A087X1U6;P58107 A0A075B730 1884 1893 EPPK1 Epiplakin no no 2 0.0054402 52.278 1 4.0253 4.0563 NaN 1 Median 4.0253 4.0563 NaN 1 0 Median NaN NaN NaN 0 0 Median 7794000 855000 6939000 7794000 855000 6939000 0 0 0 3846 397;1622 3950 10140 15901 15901 287 1 EVNEGIQALSNSEEEK SSKSGPVIAKREVKKEVNEGIQALSNSEEE VNEGIQALSNSEEEKKGVAASLLAPLLPEG K E V E K K 1 0 2 0 0 1 5 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 16 0 1774.8221 B3KNP0;D3DQS4;Q8N3X1 B3KNP0 303 318 FNBP4 Formin-binding protein 4 yes no 2 0.00027589 68.44 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2640800 0 2640800 2640800 0 2640800 0 0 0 3847 917 3951 10141;10142 15902;15903 15902 2 EVNEQTHFASMPR SKDERQEDPYGPQTKEVNEQTHFASMPRDI TKEVNEQTHFASMPRDIYQDYTQDSFSIQD K E V P R D 1 1 1 0 0 1 2 0 1 0 0 0 1 1 1 1 1 0 0 1 0 0 13 0 1544.7042 Q6NUN2;A3F769;O15226;A3F768;A2I828;A1Z1A7;A2I830 Q6NUN2 82 94 NKRF;NRF NF-kappa-B-repressing factor yes no 2;3 0.00014996 65.179 2 0.83075 0.83035 7.1976 2 Median 0.83075 0.83035 7.1976 2 0 Median NaN NaN NaN 0 0 Median 22108000 12446000 9662600 22108000 12446000 9662600 0 0 0 3848 655 3952 10143;10144 15904;15905 15904 512 2 EVNFSVDQNTSSENK LANLKLHTEDSRMKKEVNFSVDQNTSSENK EVNFSVDQNTSSENKIDFNDFIKRLKTGKC K E V N K I 0 0 3 1 0 1 2 0 0 0 0 1 0 1 0 3 1 0 0 2 0 0 15 0 1696.754 Q8NG31;E9PPJ1;Q05C46 Q8NG31 224 238 CASC5 Protein CASC5 no no 2 1.1682E-07 110.31 2 2 0.91414 0.81887 11.899 4 Median 0.73792 0.7401 10.991 2 0 Median 1.0822 0.87269 5.6889 2 0 Median 59576000 30711000 28865000 47606000 24858000 22749000 11970000 5853400 6116300 3849 1928;1685 3953 10145;10146;10147;10148 15906;15907;15908;15909;15910;15911 15911 6 EVNFTSELR DERIKQHPKNQEEYKEVNFTSELRKHPSSP NQEEYKEVNFTSELRKHPSSPARVTKGCTI K E V L R K 0 1 1 0 0 0 2 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 9 0 1093.5404 Q643R0;Q9ULW0;B3KM90 Q643R0 280 288 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.040745 49.554 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3850 1837 3954 10149;10150 15912;15913 15912 2 EVNFTSELRK DERIKQHPKNQEEYKEVNFTSELRKHPSSP QEEYKEVNFTSELRKHPSSPARVTKGCTIV K E V R K H 0 1 1 0 0 0 2 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 10 1 1221.6354 Q643R0;Q9ULW0;B3KM90 Q643R0 280 289 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.00061089 98.033 2 2 1.0142 1.0206 8.9578 4 Median 0.79907 0.94735 12.486 2 0 Median 1.2041 1.0317 3.4782 2 0 Median 152640000 76073000 76564000 122100000 62766000 59337000 30535000 13307000 17228000 3851 1837 3955 10151;10152;10153;10154 15914;15915;15916;15917;15918 15917 4 EVNSQEEEEEELLRK EQFALALKMSEQEAREVNSQEEEEEELLRK EVNSQEEEEEELLRKAIAESLNSCRPSDAS R E V R K A 0 1 1 0 0 1 7 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 15 1 1859.8749 A0A024R7R0;Q96RL1;D6RC40;D6RCQ3 A0A024R7R0 98 112 RAP80;UIMC1 BRCA1-A complex subunit RAP80 yes no 3 0.061966 11.055 1 1.299 1.1107 NaN 1 Median NaN NaN NaN 0 0 Median 1.299 1.1107 NaN 1 0 Median 1517600 499930 1017600 0 0 0 1517600 499930 1017600 3852 233 3956 10155 15919 15919 1 EVPAVPETLK LFPAGTMEGVEEKKKEVPAVPETLKKKRRN EEKKKEVPAVPETLKKKRRNFAELKIKRLR K E V L K K 1 0 0 0 0 0 2 0 0 0 1 1 0 0 2 0 1 0 0 2 0 0 10 0 1081.6019 A0A024R814;P18124 A0A024R814 21 30 RPL7 60S ribosomal protein L7 yes no 2 0.00085026 80.219 2 1 1.0039 1.1864 25.502 3 Plateau 0.99146 1.1681 2.2038 2 0 Median 0.88813 0.75163 NaN 1 0 Median 886800000 456230000 430560000 827070000 424960000 402110000 59728000 31273000 28455000 3853 240 3957 10156;10157;10158 15920;15921;15922;15923;15924;15925;15926;15927;15928 15926 9 EVPAVPETLKK LFPAGTMEGVEEKKKEVPAVPETLKKKRRN EKKKEVPAVPETLKKKRRNFAELKIKRLRK K E V K K K 1 0 0 0 0 0 2 0 0 0 1 2 0 0 2 0 1 0 0 2 0 0 11 1 1209.6969 A0A024R814;P18124 A0A024R814 21 31 RPL7 60S ribosomal protein L7 yes no 2 0.00056349 96.665 2 2 0.96064 0.9511 25.342 4 Median 1.0152 1.1884 2.3127 2 0 Median 0.90228 0.76678 1.283 2 0 Median 210910000 104500000 106420000 190110000 93567000 96545000 20803000 10928000 9874400 3854 240 3958 10159;10160;10161;10162 15929;15930;15931;15932 15929 4 EVPDYLDHIK DKDPARIFAQPVSLKEVPDYLDHIKHPMDF PVSLKEVPDYLDHIKHPMDFATMRKRLEAQ K E V I K H 0 0 0 2 0 0 1 0 1 1 1 1 0 0 1 0 0 0 1 1 0 0 10 0 1227.6136 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B7Z926;Q59G93;Q9Y4Q3;B4DZC2 A0A024R4W4 595 604 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.014048 59.153 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8688700 8688700 0 8688700 8688700 0 0 0 0 3855 162 3959 10163 15933 15933 1 EVPEHITEEELK AATREFIEMWRLLGREVPEHITEEELKTLM LGREVPEHITEEELKTLMECVSNTAKKKYL R E V L K T 0 0 0 0 0 0 5 0 1 1 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1451.7144 Q7L0Y3;C9JVB6 Q7L0Y3 107 118 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 0.002262 68.657 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15327000 0 15327000 15327000 0 15327000 0 0 0 3856 1871 3960 10164 15934;15935 15934 2 EVPEYLNHVSK NCLYAAEGQRLMQEREVPEYLNHVSKRLEE MQEREVPEYLNHVSKRLEEEGDRVITYLDH R E V S K R 0 0 1 0 0 0 2 0 1 0 1 1 0 0 1 1 0 0 1 2 0 0 11 0 1313.6616 Q13619;A0A0A0MR50;B2RBV7 Q13619 255 265 CUL4A Cullin-4A yes no 2 0.0040736 68.893 2 1 0.58972 0.63704 15.802 3 Median 0.58652 0.61115 5.8692 2 0 Median 1.0106 0.79586 NaN 1 0 Median 75341000 47158000 28184000 69629000 44307000 25321000 5712900 2850200 2862700 3857 1718 3961 10165;10166;10167 15936;15937;15938;15939 15936 4 EVPIPEHIDIYHLTR NGIGKSMLLSAIGKREVPIPEHIDIYHLTR EVPIPEHIDIYHLTREMPPSDKTPLHCVME R E V T R E 0 1 0 1 0 0 2 0 2 3 1 0 0 0 2 0 1 0 1 1 0 0 15 0 1830.9628 A0A090N7X1;A0A090N7Y2;Q9UG63;C9JHK9;C9JZV3 A0A090N7X1 135 149 ABCF2 ATP-binding cassette sub-family F member 2 yes no 3;4 0.00020627 52.522 3 1.1997 1.0345 24.995 3 Median NaN NaN NaN 0 0 Median 1.1997 1.0345 24.995 3 0 Median 10006000 4369600 5635900 0 0 0 10006000 4369600 5635900 3858 455 3962 10168;10169;10170 15940;15941;15942;15943 15940 4 EVPLPAGIYNLDDLK LPHCRFYEEFDAHGREVPLPAGIYNLDDLK EVPLPAGIYNLDDLKALGRRQGWCPYFLAR R E V L K A 1 0 1 2 0 0 1 1 0 1 3 1 0 0 2 0 0 0 1 1 0 0 15 0 1655.877 A8MX75;P18074;K7EIT8 A8MX75 143 157 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 2 0.004564 38.875 1 0.69202 0.70545 NaN 1 Median 0.69202 0.70545 NaN 1 0 Median NaN NaN NaN 0 0 Median 12184000 6955900 5227700 12184000 6955900 5227700 0 0 0 3859 799 3963 10171 15944 15944 1 EVPLVFPK HTTTNVFHFTFMSEKEVPLVFPKTYGESML FTFMSEKEVPLVFPKTYGESMLYLDGQRHF K E V P K T 0 0 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 0 0 2 0 0 8 0 927.54295 Q9Y305;Q9H2R8 Q9Y305 400 407 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 0.053457 53.554 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3860 2130 3964 10172 15945 15945 1 EVPTQFLDRDEEEEDADFLK QAPSLPNTSEAQKIKEVPTQFLDRDEEEED FLDRDEEEEDADFLKVKRHNVFGLDLKDEK K E V L K V 1 1 0 4 0 1 5 0 0 0 2 1 0 2 1 0 1 0 0 1 0 0 20 1 2424.0969 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 618 637 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 3 0.0005291 51.348 2 1 0.89916 0.88615 18.791 2 Median 0.87058 1.0121 NaN 1 0 Median 0.92868 0.7759 NaN 1 0 Median 54975000 36367000 18607000 48515000 33204000 15311000 6459800 3163400 3296400 3861 1708 3965 10173;10174;10175 15946;15947;15948;15949;15950 15947 5 EVQDGIAPR PVPESGDGERVPEQKEVQDGIAPRMFKALI RVPEQKEVQDGIAPRMFKALIGKGHPEFST K E V P R M 1 1 0 1 0 1 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 9 0 983.50361 A0A140VJZ1;P45974 A0A140VJZ1 407 415 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.00049028 98.523 1 3.3876 3.4951 NaN 1 Median 3.3876 3.4951 NaN 1 0 Median NaN NaN NaN 0 0 Median 10244000 3129800 7114700 10244000 3129800 7114700 0 0 0 3862 613 3966 10176 15951 15951 1 EVQGFESATFLGYFK VQLDDYLNGRAVQHREVQGFESATFLGYFK EVQGFESATFLGYFKSGLKYKKGGVASGFK R E V F K S 1 0 0 0 0 1 2 2 0 0 1 1 0 3 0 1 1 0 1 1 0 0 15 0 1721.8301 Q5T0I0;B7Z4U6;B7Z992;A0A0A0MS51;B7Z9A0;B7Z6N2;A0A0A0MT01;CON__Q3SX14;P06396;Q5T0I1;A0A0U1RQL8 Q5T0I0 97 111 GSN Gelsolin yes no 2 0.00052375 71.085 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6953900 6953900 0 5260900 5260900 0 1693000 1693000 0 + 3863 474 3967 10177;10178 15952;15953 15953 2 EVQLAQIFEPLSR AKQAVHCIHAIFTNKEVQLAQIFEPLSRSL NKEVQLAQIFEPLSRSLNADVPEQLITPLV K E V S R S 1 1 0 0 0 2 2 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 13 0 1528.8249 G1UI16;Q29RF7;H0Y9L6 G1UI16 751 763 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 1.0293E-05 98.156 1 2 0.55575 0.46488 9.2803 2 Median NaN NaN NaN 0 0 Median 0.55575 0.46488 9.2803 2 0 Median 16689000 6227900 10462000 6864900 0 6864900 9824600 6227900 3596600 3864 1270 3968 10179;10180;10181 15954;15955;15956;15957 15955 4 EVQQHALIHQESK PFKCDICLLTFSDTKEVQQHALIHQESKTH TKEVQQHALIHQESKTHQCLHCDHKSSNSS K E V S K T 1 0 0 0 0 3 2 0 2 1 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1545.79 Q8WWU0;Q8WXB7;E9PEP7;A0A024RC04;B7ZKJ5;P17010 Q8WWU0 306 318 ZFX Zinc finger X-chromosomal protein yes no 3 0.045336 19.244 1 1.0538 0.85486 NaN 1 Median NaN NaN NaN 0 0 Median 1.0538 0.85486 NaN 1 0 Median 2724000 1579900 1144100 0 0 0 2724000 1579900 1144100 3865 351 3969 10182 15958 15958 1 EVQQTLEELR YRKELINNLDADSLREVQQTLEELRAVAKK ADSLREVQQTLEELRAVAKKVHSTIQKIKK R E V L R A 0 1 0 0 0 2 3 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1243.6408 B3KPM8;Q8N5C6 B3KPM8 263 272 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.00325 66.435 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3866 921 3970 10183 15959 15959 1 EVQSALSTAAADDSK TKSSENNSLNPEVMREVQSALSTAAADDSK EVQSALSTAAADDSKLVLLSAVGSVFCCGL R E V S K L 4 0 0 2 0 1 1 0 0 0 1 1 0 0 0 3 1 0 0 1 0 0 15 0 1491.7053 Q9Y232;C9JQG7 Q9Y232 374 388 CDYL Chromodomain Y-like protein yes no 2 2.5057E-38 164.48 2 2 1.3444 1.2795 11.637 4 Median 1.2432 1.4006 1.5797 2 0 Median 1.4499 1.15 3.8898 2 0 Median 208690000 92700000 115990000 182740000 82558000 100180000 25952000 10142000 15809000 3867 2121 3971 10184;10185;10186;10187 15960;15961;15962;15963;15964;15965;15966;15967;15968 15961 9 EVQSPEGMISLR FRIRVAYQREPQILKEVQSPEGMISLRDTA ILKEVQSPEGMISLRDTAASLRLERDTRQL K E V L R D 0 1 0 0 0 1 2 1 0 1 1 0 1 0 1 2 0 0 0 1 0 0 12 0 1344.6708 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 808 819 NOL6 Nucleolar protein 6 yes no 2 3.0323E-13 133.81 2 4 1.1766 1.1489 31.6 4 Median 1.3177 1.5048 6.5871 2 0 Median 1.0672 0.87744 6.5477 2 0 Median 302290000 130170000 172120000 281470000 119750000 161720000 20817000 10417000 10401000 3868 2038 3972;3973 10188;10189;10190;10191;10192;10193 15969;15970;15971;15972;15973;15974;15975;15976 15969 1876 8 EVSDDEAEEKEDKEEEK IGYPITLFVEKERDKEVSDDEAEEKEDKEE SDDEAEEKEDKEEEKEKEEKESEDKPEIED K E V E K E 1 0 0 3 0 0 8 0 0 0 0 3 0 0 0 1 0 0 0 1 0 0 17 2 2036.8546 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322 K9JA46 229 245 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 0.0011451 42.647 1 6.2085 5.8147 NaN 1 Median NaN NaN NaN 0 0 Median 6.2085 5.8147 NaN 1 0 Median 2354100 335810 2018300 0 0 0 2354100 335810 2018300 3869 1348 3974 10194 15977 15977 1 EVSDGIIAPGYEEEALTILSK LSDVCDVPTAKIISREVSDGIIAPGYEEEA IAPGYEEEALTILSKKKNGNYCVLQMDQSY R E V S K K 2 0 0 1 0 0 4 2 0 3 2 1 0 0 1 2 1 0 1 1 0 0 21 0 2233.1366 V9HWH7;B2R7P8;P31939;B4DP06 V9HWH7 336 356 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.0032569 30.483 1 2.6841 2.7385 NaN 1 Median 2.6841 2.7385 NaN 1 0 Median NaN NaN NaN 0 0 Median 12049000 3121200 8927900 12049000 3121200 8927900 0 0 0 3870 852 3975 10195 15978 15978 1 EVSIEDTGVDVDPEK GENMEKSCASKEEVKEVSIEDTGVDVDPEK EVSIEDTGVDVDPEKLEMESKLHRNLLFQD K E V E K L 0 0 0 3 0 0 3 1 0 1 0 1 0 0 1 1 1 0 0 3 0 0 15 0 1630.7574 B2RMQ4;Q8WWK9 B2RMQ4 531 545 CKAP2 Cytoskeleton-associated protein 2 yes no 2 3.3671E-10 116.54 2 2 1.2143 1.0757 9.1025 4 Median 1.002 1.0978 13.922 2 0 Median 1.3636 1.0757 7.1132 2 0 Median 118470000 54857000 63618000 90503000 43444000 47059000 27971000 11413000 16558000 3871 895 3976 10196;10197;10198;10199 15979;15980;15981;15982;15983;15984;15985 15980 7 EVSQVDTICECLLEHEEQVLR YEIPSNLTPADVFFREVSQVDTICECLLEH TICECLLEHEEQVLRDAPMDSIEWAEVVIN R E V L R D 0 1 0 1 2 2 5 0 1 1 3 0 0 0 0 1 1 0 0 3 0 0 21 0 2585.2102 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 676 696 NUP133 Nuclear pore complex protein Nup133 yes no 3 0.012998 21.006 1 1.1604 1.0063 NaN 1 Median NaN NaN NaN 0 0 Median 1.1604 1.0063 NaN 1 0 Median 2083900 1094300 989690 0 0 0 2083900 1094300 989690 3872 1070 3977 10200 15986 15986 1 EVSSSFDHVIK ESDKGEELGPGNVQKEVSSSFDHVIKETTR NVQKEVSSSFDHVIKETTREMIARSAATLI K E V I K E 0 0 0 1 0 0 1 0 1 1 0 1 0 1 0 3 0 0 0 2 0 0 11 0 1246.6194 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 112 122 MTCH2 Mitochondrial carrier homolog 2 yes no 2 0.00016523 94.309 2 1 1.7113 1.8297 9.6773 3 Plateau 1.6291 1.8297 6.6732 2 0 Median 2.026 1.5806 NaN 1 0 Median 155840000 56937000 98907000 152560000 55764000 96796000 3283300 1172300 2111000 3873 2152 3978 10201;10202;10203 15987;15988;15989;15990;15991 15988 5 EVSTAPAGTDMPAAK ______________________________ EVSTAPAGTDMPAAKKQKLSSDENSNPDLS R E V A K K 4 0 0 1 0 0 1 1 0 0 0 1 1 0 2 1 2 0 0 1 0 0 15 0 1444.6868 O75530;E9PJK2;H0YEL4 O75530 5 19 EED Polycomb protein EED yes no 2 0.00012487 61.344 2 1.2296 1.2825 NaN 1 Median 1.2296 1.2825 NaN 1 0 Median NaN NaN NaN 0 0 Median 21296000 4926100 16370000 21296000 4926100 16370000 0 0 0 3874 1407 3979 10204;10205 15992;15993 15993 1084 2 EVSTYIK TEPPYSQKRYEEIVKEVSTYIKKIGYNPDT KRYEEIVKEVSTYIKKIGYNPDTVAFVPIS K E V I K K 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 1 0 1 1 0 0 7 0 838.44363 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;Q53G89;Q6P4C9;B4E2C5;A0A087WV01;Q9H2I7;Q16577;A9X7H1;Q53HR1 Q6IPT9 173 179 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 no no 2 0.028931 71.141 1 1 1.9785 1.971 52.837 2 Median 2.4257 2.8638 NaN 1 0 Median 1.6138 1.3565 NaN 1 0 Median 1083400000 296890000 786540000 1032900000 277940000 755000000 50485000 18947000 31537000 3875 1658;1790 3980 10206;10207 15994;15995;15996 15995 3 EVTEPLNLNPAK RRHQFRWSEIQKGVREVTEPLNLNPAKRPR GVREVTEPLNLNPAKRPRRQDWDGELYENG R E V A K R 1 0 2 0 0 0 2 0 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1323.7034 Q53GF0;Q8NFW8;F5GYM0 Q53GF0 189 200 CMAS N-acylneuraminate cytidylyltransferase yes no 2 9.322E-05 90.629 3 2 0.91563 0.89141 11.308 3 Plateau 0.87367 0.89141 NaN 1 0 Median 1.0022 0.80716 13.784 2 0 Median 14430000 6049100 8380900 9275500 3504100 5771400 5154500 2545000 2609500 3876 1788 3981 10208;10209;10210;10211;10212 15997;15998;15999;16000;16001;16002 15998 6 EVTFSFIPR NILKVCPDLLNKYFKEVTFSFIPRAKSTWL LNKYFKEVTFSFIPRAKSTWLNNIKLLNKI K E V P R A 0 1 0 0 0 0 1 0 0 1 0 0 0 2 1 1 1 0 0 1 0 0 9 0 1094.576 O60287 O60287 377 385 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0028653 73.248 2 2 1.132 1.0558 2.9193 4 Median 1.0198 1.039 2.3732 2 0 Median 1.2515 1.076 2.7804 2 0 Median 34915000 15643000 19272000 27440000 12339000 15102000 7475200 3304500 4170700 3877 1392 3982 10213;10214;10215;10216 16003;16004;16005;16006;16007;16008 16003 6 EVTFVPGLYK QQMWVYDEDVGINYREVTFVPGLYKIFDEI GINYREVTFVPGLYKIFDEILVNAADNKQR R E V Y K I 0 0 0 0 0 0 1 1 0 0 1 1 0 1 1 0 1 0 1 2 0 0 10 0 1151.6227 P11388;J3KTB7;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 74 83 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 1;2 2.966E-09 125.31 4 3 0.75464 0.90061 23.637 6 Median 0.7554 0.89642 10.522 3 0 Plateau 1.3172 1.1604 34.371 3 0 Median 3694400000 2047800000 1646600000 3213200000 1847800000 1365500000 481130000 200060000 281070000 3878 1471;1679 3983 10217;10218;10219;10220;10221;10222;10223 16009;16010;16011;16012;16013;16014;16015;16016;16017;16018;16019;16020;16021;16022;16023;16024;16025;16026;16027;16028 16017 19 EVTINQSLLAPLR AVRSAYGGPVGAGIREVTINQSLLAPLRLD IREVTINQSLLAPLRLDADPSLQRVRQEES R E V L R L 1 1 1 0 0 1 1 0 0 1 3 0 0 0 1 1 1 0 0 1 0 0 13 0 1452.83 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 65 77 KRT7 Keratin, type II cytoskeletal 7 no no 2 1.0614E-60 201.33 2 2 1.013 1.1647 13.875 4 Linear 0.98332 1.131 6.0257 2 0 Median 1.0584 0.91093 8.5501 2 0 Median 411930000 202640000 209300000 308910000 152330000 156580000 103020000 50309000 52715000 + 3879 1171;1158 3984 10224;10225;10226;10227 16029;16030;16031;16032;16033;16034;16035;16036 16034 8 EVTLALLSLPETHLVTQQPTK ALQELHPYMEGAQLREVTLALLSLPETHLV LSLPETHLVTQQPTKSPGKERHLNALGKTL R E V T K S 1 0 0 0 0 2 2 0 1 0 5 1 0 0 2 1 4 0 0 2 0 0 21 0 2317.2893 O60287 O60287 1122 1142 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 5.7371E-06 34.346 1 1.3591 1.0571 NaN 1 Median NaN NaN NaN 0 0 Median 1.3591 1.0571 NaN 1 0 Median 12492000 5324900 7167200 0 0 0 12492000 5324900 7167200 3880 1392 3985 10228 16037 16037 1 EVTLGQVAK SEGRRRQLLRRYRQREVTLGQVAKLLEAET RRYRQREVTLGQVAKLLEAETQRQADIMLP R E V A K L 1 0 0 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 0 943.53385 A0A075B730;A0A087X1U6;P58107 A0A075B730 833 841 EPPK1 Epiplakin no no 2 0.0038742 70.69 2 1.8352 1.8938 7.4297 2 Median 1.8352 1.8938 7.4297 2 0 Median NaN NaN NaN 0 0 Median 46305000 15939000 30366000 46305000 15939000 30366000 0 0 0 3881 397;1622 3986 10229;10230 16038;16039;16040 16039 3 EVTLNLYDTAGQEDYDR SVFEKYTASVTVGSKEVTLNLYDTAGQEDY TLNLYDTAGQEDYDRLRPLSYQNTHLVLIC K E V D R L 1 1 1 3 0 1 2 1 0 0 2 0 0 0 0 0 2 0 2 1 0 0 17 0 2000.8963 F5GXB1;A8K0B7;Q9HBH0 F5GXB1 66 82 RHOF Rho-related GTP-binding protein RhoF yes no 2 0.0013889 56.205 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3882 698 3987 10231 16041 16041 1 EVTPEGLQMVK DRSQQKDKQSYRDLKEVTPEGLQMVKKNFE RDLKEVTPEGLQMVKKNFEWVAERVELLLK K E V V K K 0 0 0 0 0 1 2 1 0 0 1 1 1 0 1 0 1 0 0 2 0 0 11 0 1229.6326 E9PBS1;A0A024RD93;P22234;D6RF62;B4DGX3 E9PBS1 236 246 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 6.3906E-06 107.57 2 1.5041 1.5169 2.5891 2 Median 1.5041 1.5169 2.5891 2 0 Median NaN NaN NaN 0 0 Median 41330000 15356000 25974000 41330000 15356000 25974000 0 0 0 3883 380 3988 10232;10233 16042;16043 16042 279 2 EVTPESGPPK IQWSEEETEDEEEEKEVTPESGPPKVEEAD EEEEKEVTPESGPPKVEEADGGLQINVDEE K E V P K V 0 0 0 0 0 0 2 1 0 0 0 1 0 0 3 1 1 0 0 1 0 0 10 0 1039.5186 P46087;F5H5X6;F5GYR3 P46087 193 202 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 4.7334E-08 116.37 2 2 1.1455 1.0816 9.4292 3 Median 0.96357 1.0844 NaN 1 0 Median 1.2298 0.99744 11.457 2 0 Median 96243000 34220000 62023000 83278000 28239000 55039000 12965000 5981200 6983900 3884 1570 3989 10234;10235;10236;10237 16044;16045;16046;16047;16048;16049;16050 16045 7 EVTQATQPEAIPQGTNITEEK QVSAADGKPGRQSRKEVTQATQPEAIPQGT QPEAIPQGTNITEEKPGRKRAEAKGNRSWS K E V E K P 2 0 1 0 0 3 4 1 0 2 0 1 0 0 2 0 4 0 0 1 0 0 21 0 2283.123 H7C2V9;A6NE70;B3KTC2;H9A532;Q6W2J9;H7BYY2;E3UVQ2 H7C2V9 106 126 BCOR;BCOR-RARA BCL-6 corepressor yes no 2 0.039091 32.275 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3885 678 3990 10238 16051 16051 1 EVTTLTADPPDGIK NVENLPPHIIRLVYKEVTTLTADPPDGIKV KEVTTLTADPPDGIKVFPNEEDLTDLQVTI K E V I K V 1 0 0 2 0 0 1 1 0 1 1 1 0 0 2 0 3 0 0 1 0 0 14 0 1455.7457 K7EPJ1;Q16763;K7EM75;Q6NXQ4;Q2QD04 K7EPJ1 19 32 UBE2S Ubiquitin-conjugating enzyme E2 S yes no 2 0.01076 51.567 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11889000 0 11889000 11889000 0 11889000 0 0 0 3886 1343 3991 10239 16052 16052 1 EVVAEVVK TWKQEYVDYSESAKKEVVAEVVKAPQVVAE YSESAKKEVVAEVVKAPQVVAEAAKTAKRK K E V V K A 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 4 0 0 8 0 871.50148 O60832 O60832 426 433 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.0029107 98.457 2 2 0.82223 1.0412 25.605 4 Linear 0.84945 0.97404 0.19591 2 0 Median 0.79316 0.62695 5.066 2 0 Median 416390000 230380000 186000000 389160000 214730000 174430000 27228000 15658000 11570000 3887 1398 3992 10240;10241;10242;10243 16053;16054;16055;16056;16057;16058;16059;16060 16054 8 EVVCTTQNTPTVK GGSKSLLPDFLQTPKEVVCTTQNTPTVKKS PKEVVCTTQNTPTVKKSRDTALKKLEFSSS K E V V K K 0 0 1 0 1 1 1 0 0 0 0 1 0 0 1 0 4 0 0 3 0 0 13 0 1475.729 B2RAN0;P54132;H0YNU5;Q3B7X0;H0YLV8 B2RAN0 117 129 BLM Bloom syndrome protein yes no 2 0.012922 38.875 2 1.9671 1.6508 21.26 2 Median NaN NaN NaN 0 0 Median 1.9671 1.6508 21.26 2 0 Median 3223900 1132500 2091400 0 0 0 3223900 1132500 2091400 3888 873 3993 10244;10245 16061;16062 16061 2 EVVDEGLIPGDGLGAAGLDSSFYGHLK LERKCAMLEYTTGSREVVDEGLIPGDGLGA LGAAGLDSSFYGHLKRNWIWTSYIINQAKK R E V L K R 2 0 0 3 0 0 2 6 1 1 4 1 0 1 1 2 0 0 1 2 0 0 27 0 2715.3392 Q6AHZ7;Q12789 Q6AHZ7 1102 1128 DKFZp686A111;GTF3C1 General transcription factor 3C polypeptide 1 yes no 3 6.7713E-11 60.621 1 2 0.97568 0.98916 NaN 1 Median 0.97568 0.98916 NaN 1 0 Median NaN NaN NaN 0 0 Median 51957000 14322000 37635000 29483000 14322000 15162000 22474000 0 22474000 3889 1699 3994 10246;10247;10248 16063;16064;16065;16066 16065 4 EVVECQSTSTVGGQSVK PSNIIDHCEKLASEKEVVECQSTSTVGGQS VECQSTSTVGGQSVKKVDLETLKEDSEFTK K E V V K K 0 0 0 0 1 2 2 2 0 0 0 1 0 0 0 3 2 0 0 4 0 0 17 0 1793.8465 Q96T23;H0YER1;H0YCN2 Q96T23 646 662 RSF1 Remodeling and spacing factor 1 yes no 2 1.056E-18 121.04 3 1 1.0918 0.86517 NaN 1 Median NaN NaN NaN 0 0 Median 1.0918 0.86517 NaN 1 0 Median 10403000 7673300 2729800 5581300 5581300 0 4821800 2092000 2729800 3890 1991 3995 10249;10250;10251;10252 16067;16068;16069;16070 16069 4 EVVEQGLLK LRLALKEDKFPRFWKEVVEQGLLKMQFWPA FPRFWKEVVEQGLLKMQFWPASYLCFRLLG K E V L K M 0 0 0 0 0 1 2 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 1013.5757 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 287 295 MYBBP1A Myb-binding protein 1A yes no 2 0.0011603 89.142 3 2 0.83916 0.79923 27.918 2 Median 0.87734 0.97365 NaN 1 0 Median 0.80265 0.65605 NaN 1 0 Median 90612000 29452000 61161000 77569000 25249000 52321000 13043000 4202700 8840100 3891 1997 3996 10253;10254;10255;10256;10257 16071;16072;16073;16074;16075;16076;16077 16074 7 EVVETPLLHPER YSDVGGCKEQIEKLREVVETPLLHPERFVN KLREVVETPLLHPERFVNLGIEPPKGVLLF R E V E R F 0 1 0 0 0 0 3 0 1 0 2 0 0 0 2 0 1 0 0 2 0 0 12 0 1417.7565 A0A140VK70;P35998;Q75L23 A0A140VK70 189 200 PSMC2 26S protease regulatory subunit 7 yes no 3 0.0043638 53.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9175900 0 9175900 9175900 0 9175900 0 0 0 3892 620 3997 10258 16078 16078 1 EVVHTVSLHEIDVINSR TKFVQCPDGELQKRKEVVHTVSLHEIDVIN VHTVSLHEIDVINSRTQGFLALFSGDTGEI K E V S R T 0 1 1 1 0 0 2 0 2 2 1 0 0 0 0 2 1 0 0 4 0 0 17 0 1946.0221 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 237 253 RUVBL2 RuvB-like 2 yes no 3 0.00339 31.115 2 1.1318 0.94772 0.9035 2 Median NaN NaN NaN 0 0 Median 1.1318 0.94772 0.9035 2 0 Median 17279000 7782300 9497100 0 0 0 17279000 7782300 9497100 3893 2120 3998 10259;10260 16079;16080;16081 16081 3 EVVSLLLDDEELEK VISGGNFKPDTLKPKEVVSLLLDDEELEKK KEVVSLLLDDEELEKKLRLRQEEKRQQEET K E V E K K 0 0 0 2 0 0 4 0 0 0 4 1 0 0 0 1 0 0 0 2 0 0 14 0 1629.8349 A0A024R9R7;Q9ULG1;A8K2V6;Q9NUK2;Q6N074;A0A087X0U7 A0A024R9R7 1263 1276 INOC1;INO80;DKFZp686N224 DNA helicase INO80 yes no 2 0.0029928 63.727 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5140200 5140200 0 5140200 5140200 0 0 0 0 3894 288 3999 10261;10262 16082;16083 16083 2 EVVVSVPQR VTVYYEVAGHLRTYKEVVVSVPQRIMARHL HLRTYKEVVVSVPQRIMARHLHPIQTSFQE K E V Q R I 0 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 4 0 0 9 0 1011.5713 Q8TEM1 Q8TEM1 1548 1556 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0074668 61.962 1 0.64247 0.67402 NaN 1 Median 0.64247 0.67402 NaN 1 0 Median NaN NaN NaN 0 0 Median 22888000 14538000 8349600 22888000 14538000 8349600 0 0 0 3895 1937 4000 10263 16084 16084 1 EVVVVGATNRPDALDPALR VAQVLTLLDGASGDREVVVVGATNRPDALD VGATNRPDALDPALRRPGRFDREVVIGTPT R E V L R R 3 2 1 2 0 0 1 1 0 0 2 0 0 0 2 0 1 0 0 4 0 0 19 1 1991.08 Q9BVQ7 Q9BVQ7 337 355 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 3 0.0091833 40.856 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2286500 2286500 0 2286500 2286500 0 0 0 0 3896 2009 4001 10264 16085 16085 1 EVYLHAIVR MVMLGLKLTGRLPFREVYLHAIVRDAHGRK GRLPFREVYLHAIVRDAHGRKMSKSLGNVI R E V V R D 1 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 2 0 0 9 0 1098.6186 A0A024RCN6;P26640;A0A140T936;B4DT32;H0Y426 A0A024RCN6 848 856 VARS Valine--tRNA ligase yes no 2 0.016119 54.157 1 1.1059 1.1457 NaN 1 Median 1.1059 1.1457 NaN 1 0 Median NaN NaN NaN 0 0 Median 5857000 2634000 3223000 5857000 2634000 3223000 0 0 0 3897 363 4002 10265 16086 16086 1 EVYMTPLR TLTTTTFQNEDEKNKEVYMTPLRGVKATQA NEDEKNKEVYMTPLRGVKATQASKSTQLKT K E V L R G 0 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 8 0 1007.511 Q9BPX3;Q6NUR1 Q9BPX3 927 934 NCAPG Condensin complex subunit 3 yes no 2 0.0013275 98.997 2 1 1.0369 1.1576 14.311 3 Median 1.0234 1.1604 0.34159 2 0 Median 1.0876 0.90569 NaN 1 0 Median 276350000 131040000 145310000 265650000 126230000 139420000 10694000 4810000 5884100 3898 1995 4003 10266;10267;10268 16087;16088;16089;16090;16091 16088 1824 5 EVYQQQQYGSGGR TVSGSKCEIKVAQPKEVYQQQQYGSGGRGN PKEVYQQQQYGSGGRGNRNRGNRGSGGGQG K E V G R G 0 1 0 0 0 4 1 3 0 0 0 0 0 0 0 1 0 0 2 1 0 0 13 0 1498.6801 D6R9P3;D6RD18;B4DMY3;D6RBZ0;Q53F64;Q99729 D6R9P3 233 245 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2 3.5616E-09 113.63 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7404300 0 7404300 7404300 0 7404300 0 0 0 3899 1008 4004 10269;10270 16092;16093;16094 16094 3 EWGSGSDTLR PMTSGVKQKIMSVIREWGSGSDTLRCLALA MSVIREWGSGSDTLRCLALATHDNPLRREE R E W L R C 0 1 0 1 0 0 1 2 0 0 1 0 0 0 0 2 1 1 0 0 0 0 10 0 1106.4993 A0A0S2Z3L2;P16615;H7C5W9 A0A0S2Z3L2 550 559 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 0.016683 56.432 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11168000 0 11168000 11168000 0 11168000 0 0 0 3900 554 4005 10271;10272 16095;16096 16095 2 EWLIEVPGNADPLEDQFAK WRRRWGYQRARDDTKEWLIEVPGNADPLED EVPGNADPLEDQFAKRIQAKKERVAKNELN K E W A K R 2 0 1 2 0 1 3 1 0 1 2 1 0 1 2 0 0 1 0 1 0 0 19 0 2170.0582 Q15050 Q15050 155 173 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 7.6668E-08 80.245 2 1 0.8709 0.82052 8.7704 2 Median 0.71573 0.77118 NaN 1 0 Median 1.0597 0.87302 NaN 1 0 Median 101090000 66183000 34911000 60316000 45270000 15046000 40779000 20913000 19865000 3901 1750 4006 10273;10274;10275 16097;16098;16099;16100;16101;16102;16103 16100 7 EWLLGMLGAESAK RDFFELRLKYYGLRKEWLLGMLGAESAKLN RKEWLLGMLGAESAKLNNQARFILEKIDGK K E W A K L 2 0 0 0 0 0 2 2 0 0 3 1 1 0 0 1 0 1 0 0 0 0 13 0 1403.7119 P11388 P11388 1035 1047 TOP2A DNA topoisomerase 2-alpha yes yes 2 8.6728E-11 125.23 4 7 0.95871 0.96613 32.126 9 Median 0.66697 1.0109 34.417 4 0 Linear 1.4051 1.1623 22.843 5 0 Median 810810000 422100000 388710000 585300000 318850000 266440000 225510000 103240000 122270000 3902 1471 4007;4008 10276;10277;10278;10279;10280;10281;10282;10283;10284;10285;10286 16104;16105;16106;16107;16108;16109;16110;16111;16112;16113;16114;16115;16116;16117;16118;16119;16120;16121;16122;16123;16124;16125;16126;16127;16128;16129 16128 1195 26 EWLNSCDLK TMINAIPVASLDPIKEWLNSCDLKYTEGVQ SLDPIKEWLNSCDLKYTEGVQSLNWTKIMK K E W L K Y 0 0 1 1 1 0 1 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 9 0 1163.5281 Q9Y5B9 Q9Y5B9 884 892 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0011497 95.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3903 2148 4009 10287 16130 16130 1 EWLTNFMEDR AISLAFSKKQIDDRKEWLTNFMEDRRQRKL IDDRKEWLTNFMEDRRQRKLLGLPEDYLYG K E W D R R 0 1 1 1 0 0 2 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 10 0 1339.5867 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 P11388 663 672 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 9.642E-05 110.87 4 6 0.92743 1.0588 37.798 10 Median 0.68717 0.7408 43.675 4 0 Median 1.4027 1.1757 31.512 6 0 Median 362630000 188700000 173930000 271520000 146230000 125290000 91106000 42467000 48639000 3904 1471;1679 4010;4011 10288;10289;10290;10291;10292;10293;10294;10295;10296;10297 16131;16132;16133;16134;16135;16136;16137;16138;16139;16140;16141;16142;16143;16144;16145;16146;16147 16142 1196 17 EWLTNFMEDRR AISLAFSKKQIDDRKEWLTNFMEDRRQRKL DDRKEWLTNFMEDRRQRKLLGLPEDYLYGQ K E W R R Q 0 2 1 1 0 0 2 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 11 1 1495.6878 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 P11388 663 673 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 3 0.0070658 43.68 1 1 1.2694 1.2945 9.7886 2 Median 1.06 1.208 NaN 1 0 Median 1.5202 1.3873 NaN 1 0 Median 48557000 22338000 26220000 40279000 18905000 21373000 8278600 3432200 4846400 3905 1471;1679 4012;4013 10298;10299 16148;16149 16148 1196 2 EWLVGMLGAESTK KEFFDLRLSYYGLRKEWLVGMLGAESTKLN RKEWLVGMLGAESTKLNNQARFILEKIQGK K E W T K L 1 0 0 0 0 0 2 2 0 0 2 1 1 0 0 1 1 1 0 1 0 0 13 0 1419.7068 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6;H7BZ82 Q71UH4 1028 1040 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 6.0872E-05 78.342 2 1 0.93066 0.84549 32.888 2 Median 0.658 0.67006 NaN 1 0 Median 1.3163 1.0668 NaN 1 0 Median 22421000 10772000 11649000 19733000 9447100 10286000 2687500 1325000 1362500 3906 1679 4014;4015 10300;10301;10302 16150;16151;16152 16150 1483 2 EWMPVTK RGRGRGARGGKAEDKEWMPVTKLGRLVKDM RGGKAEDKEWMPVTKLGRLVKDMKIKSLEE K E W T K L 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 1 1 0 1 0 0 7 0 889.43677 P15880;Q8N5L9;Q6IPX5;Q3KQT6;E9PMM9;E9PQD7;E9PPT0;Q8NI61;D3DU83 P15880 59 65 RPS2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2 0.047562 49.058 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3907 1485 4016 10303 16153 16153 1244 1 EWQELDDAEK WGHEYVRHLAGEVAKEWQELDDAEKVQREP GEVAKEWQELDDAEKVQREPLLTLVKEIVP K E W E K V 1 0 0 2 0 1 3 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1261.5463 Q59EG8;Q13200;B4DM22;Q9NSM5 Q59EG8 174 183 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.022046 46.001 1 2.7273 2.7731 NaN 1 Median 2.7273 2.7731 NaN 1 0 Median NaN NaN NaN 0 0 Median 10316000 1618100 8698000 10316000 1618100 8698000 0 0 0 3908 1707 4017 10304 16154 16154 1 EWSGLLEELAR IGGDGSLTGANLFRKEWSGLLEELARNGQI LFRKEWSGLLEELARNGQIDKEAVQKYAYL K E W A R N 1 1 0 0 0 0 3 1 0 0 3 0 0 0 0 1 0 1 0 0 0 0 11 0 1301.6616 Q01813;Q5VSR5;V9GYV7 Q01813 140 150 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0023522 61.78 1 1.0236 0.91048 NaN 1 Median NaN NaN NaN 0 0 Median 1.0236 0.91048 NaN 1 0 Median 2362700 1202300 1160300 0 0 0 2362700 1202300 1160300 3909 1677 4018 10305 16155 16155 1 EWYGWHFPELGK DDLDKELNNYIMRCREWYGWHFPELGKIIS RCREWYGWHFPELGKIISDNLTYCKCLQKV R E W G K I 0 0 0 0 0 0 2 2 1 0 1 1 0 1 1 0 0 2 1 0 0 0 12 0 1547.7197 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 185 196 NOP58 Nucleolar protein 58 yes no 3 0.011551 34.685 1 1.1435 0.91452 NaN 1 Median NaN NaN NaN 0 0 Median 1.1435 0.91452 NaN 1 0 Median 2900600 1298400 1602200 0 0 0 2900600 1298400 1602200 3910 2129 4019 10306 16156 16156 1 EWYGYHFPELVK DQLDKDINTFSMRVREWYGYHFPELVKIIN RVREWYGYHFPELVKIINDNATYCRLAQFI R E W V K I 0 0 0 0 0 0 2 1 1 0 1 1 0 1 1 0 0 1 2 1 0 0 12 0 1566.7507 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 191 202 NOP56 Nucleolar protein 56 yes no 2;3 2.6037E-05 100.58 4 4 0.92553 0.73812 21.745 7 Median 0.57911 0.57941 34.951 3 0 Median 0.93307 0.7558 7.2972 4 0 Median 113110000 72404000 40701000 79027000 54449000 24578000 34078000 17955000 16124000 3911 785 4020 10307;10308;10309;10310;10311;10312;10313;10314 16157;16158;16159;16160;16161;16162;16163;16164;16165;16166;16167;16168;16169 16162 13 EYASEGEPLFAGGSAIPK VPYVVPLSPKLPKTKEYASEGEPLFAGGSA SEGEPLFAGGSAIPKEENLSEDSKSSSLNS K E Y P K E 3 0 0 0 0 0 3 3 0 1 1 1 0 1 2 2 0 0 1 0 0 0 18 0 1821.8785 Q9UQR0;B4DZR9;B4DRC2;H0Y6S1 Q9UQR0 519 536 SCML2 Sex comb on midleg-like protein 2 yes no 2 0.0005624 43.594 1 1.1974 0.98172 NaN 1 Median NaN NaN NaN 0 0 Median 1.1974 0.98172 NaN 1 0 Median 5064000 2222400 2841600 0 0 0 5064000 2222400 2841600 3912 2118 4021 10315 16170;16171 16170 2 EYAVNEVVAGIK EYANCKKSQGNVDNKEYAVNEVVAGIKEYF DNKEYAVNEVVAGIKEYFNVMLGTQLLYKF K E Y I K E 2 0 1 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 1 3 0 0 12 0 1290.682 B3KWX6;Q53EY5;B3KX14;Q15014;B4DXQ8;H0YM21;Q0VAE4;A0A0A0MT59;H0YMJ0;H0YLJ3;A5D8W6;B3KTM8;Q9UBU8 B3KWX6 158 169 MORF4L2;MORF4L1 Mortality factor 4-like protein 2;Mortality factor 4-like protein 1 yes no 2 0.0025251 58.37 2 0.57127 0.44968 0.13842 2 Median NaN NaN NaN 0 0 Median 0.57127 0.44968 0.13842 2 0 Median 6368900 3927300 2441600 0 0 0 6368900 3927300 2441600 3913 950 4022 10316;10317 16172;16173 16172 2 EYDELAETQGK FLVKSKHRDLTALCKEYDELAETQGKLEEK ALCKEYDELAETQGKLEEKLQELEANPPSD K E Y G K L 1 0 0 1 0 1 3 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 11 0 1281.5725 A8K2R3;O60341;R4GMQ1 A8K2R3 371 381 KDM1A Lysine-specific histone demethylase 1A yes no 2 6.0014E-16 133.13 4 1 0.99391 0.92322 17.153 2 Median 0.79724 0.81777 NaN 1 0 Median 1.2391 1.0423 NaN 1 0 Median 17148000 12170000 4977500 15657000 11501000 4156200 1490700 669360 821350 3914 711 4023 10318;10319;10320;10321;10322 16174;16175;16176;16177;16178 16175 4 EYEATLEECCAK RHPEYAVSVLLRLAKEYEATLEECCAKDDP LAKEYEATLEECCAKDDPHACYSTVFDKLK K E Y A K D 2 0 0 0 2 0 4 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 12 0 1501.6065 CON__P02769 CON__P02769 375 386 yes yes 2 0.0063834 60.434 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9823000 9823000 0 6868900 6868900 0 2954200 2954200 0 + 3915 1153 4024 10323;10324 16179;16180 16180 2 EYEIPSNLTPADVFFR SDLVNTAILIALNKREYEIPSNLTPADVFF YEIPSNLTPADVFFREVSQVDTICECLLEH R E Y F R E 1 1 1 1 0 0 2 0 0 1 1 0 0 2 2 1 1 0 1 1 0 0 16 0 1896.9258 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 660 675 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.00031624 59.198 2 1.0451 1.0396 NaN 1 Median 1.0451 1.0396 NaN 1 0 Median NaN NaN NaN 0 0 Median 13263000 4457200 8806000 13263000 4457200 8806000 0 0 0 3916 1070 4025 10325;10326 16181;16182;16183 16181 3 EYETLAMPEGSQAGR HKNKSKKKKKKSSNREYETLAMPEGSQAGR EYETLAMPEGSQAGREAGTDMQESQPTVGL R E Y G R E 2 1 0 0 0 1 3 2 0 0 1 0 1 0 1 1 1 0 1 0 0 0 15 0 1637.7355 B4DZG2;A0A024R8C1;Q15361 B4DZG2 230 244 TTF1 Transcription termination factor 1 yes no 2 0.0055637 45.653 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3917 247 4026 10327 16184 16184 187 1 EYFADMER KYYKGLGTSTAKEAKEYFADMERHRILFRY STAKEAKEYFADMERHRILFRYAGPEDDAA K E Y E R H 1 1 0 1 0 0 2 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 8 0 1059.4331 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 619 626 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.012087 55.531 2 0.67446 0.70528 4.9905 2 Median 0.67446 0.70528 4.9905 2 0 Median NaN NaN NaN 0 0 Median 47852000 25377000 22475000 47852000 25377000 22475000 0 0 0 3918 1679 4027 10328;10329 16185;16186 16186 1484 2 EYFADMK KYYKGLGTSTSKEAKEYFADMKRHRIQFKY TSTSKEAKEYFADMKRHRIQFKYSGPEDDA K E Y M K R 1 0 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 7 0 902.3844 P11388 P11388 626 632 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.016395 63.306 2 1 1.0434 1.2309 25.909 3 Plateau 1.0259 1.1734 6.7675 2 0 Median 0.92976 0.75491 NaN 1 0 Median 425270000 207790000 217480000 397950000 193460000 204490000 27316000 14328000 12989000 3919 1471 4028 10330;10331;10332 16187;16188;16189 16187 1197 3 EYGFCIMDNHK EEKLKIKEENEKLLKEYGFCIMDNHKERIA KLLKEYGFCIMDNHKERIANFKIEPPGLFR K E Y H K E 0 0 1 1 1 0 1 1 1 1 0 1 1 1 0 0 0 0 1 0 0 0 11 0 1412.5853 P11387;B9EG90 P11387 337 347 TOP1 DNA topoisomerase 1 yes no 2;3 2.0584E-06 111.06 2 4 1.7741 1.4155 6.9375 5 Median 1.2429 1.2715 NaN 1 0 Median 1.7877 1.4189 5.6218 4 0 Median 63368000 31079000 32289000 41175000 23439000 17736000 22193000 7639600 14554000 3920 1470 4029;4030 10333;10334;10335;10336;10337;10338 16190;16191;16192;16193;16194;16195;16196 16191 1185 7 EYGGLDVLVNNAGIAFK DDLQSIRALRDFLRKEYGGLDVLVNNAGIA GGLDVLVNNAGIAFKVADPTPFHIQAEVTM K E Y F K V 2 0 2 1 0 0 1 3 0 1 2 1 0 1 0 0 0 0 1 2 0 0 17 0 1778.9203 E9PQ63;A8MTM1;P16152 E9PQ63 80 96 CBR1 Carbonyl reductase [NADPH] 1 yes no 2 0.00021022 67.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5948700 0 5948700 5948700 0 5948700 0 0 0 3921 795 4031 10339 16197 16197 1 EYGMIYLGK KEVCFTIENKTPQGREYGMIYLGKDTNGEN KTPQGREYGMIYLGKDTNGENIAESLVAEG R E Y G K D 0 0 0 0 0 0 1 2 0 1 1 1 1 0 0 0 0 0 2 0 0 0 9 0 1072.5263 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;I6TRR8 A0A140VK49 108 116 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.014063 46.426 2 1.8152 1.8303 NaN 1 Median 1.8152 1.8303 NaN 1 0 Median NaN NaN NaN 0 0 Median 13233000 4013500 9219500 13233000 4013500 9219500 0 0 0 3922 618 4032 10340;10341 16198;16199 16198 471 2 EYGQIESVR LPVTCNKKKLKSFFKEYGQIESVRFRSLIP LKSFFKEYGQIESVRFRSLIPAEGTLSKKL K E Y V R F 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 1 1 0 0 9 0 1079.5247 P42696 P42696 207 215 RBM34 RNA-binding protein 34 yes yes 2 0.00028235 103.56 2 2 0.94891 0.91255 15.842 4 Median 0.94488 1.047 4.4156 2 0 Median 0.97188 0.80043 3.5174 2 0 Median 129980000 70256000 59728000 109800000 60235000 49562000 20188000 10021000 10166000 3923 1566 4033 10342;10343;10344;10345 16200;16201;16202;16203;16204;16205;16206;16207 16202 8 EYGYASLHK FSSWEDFEEEHGKGREYGYASLHKELEPFL EHGKGREYGYASLHKELEPFLLRRVKKDVE R E Y H K E 1 0 0 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 2 0 0 0 9 0 1066.5084 O14646 O14646 680 688 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.016543 53.775 1 1 0.91191 0.80358 35.188 2 Median 1.0468 1.0306 NaN 1 0 Median 0.79441 0.62657 NaN 1 0 Median 28186000 13664000 14522000 24114000 11585000 12529000 4071900 2079400 1992500 3924 1366 4034 10346;10347 16208;16209 16208 2 EYIPGQPPLSQSSDSSPTR CLLSLKAQYKEKTGKEYIPGQPPLSQSSDS GQPPLSQSSDSSPTRNSEPAGLETPEAKVL K E Y T R N 0 1 0 1 0 2 1 1 0 1 1 0 0 0 4 5 1 0 1 0 0 0 19 0 2044.9702 P07814;V9GYZ6;Q3KQZ8;B4DKX5 P07814 871 889 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 5.0796E-06 67.964 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11461000 0 11461000 11461000 0 11461000 0 0 0 3925 1454 4035 10348;10349 16210;16211;16212 16212 3 EYIPTVFDNYSAQSAVDGR KTCLLICYTTNAFPKEYIPTVFDNYSAQSA TVFDNYSAQSAVDGRTVNLNLWDTAGQEEY K E Y G R T 2 1 1 2 0 1 1 1 0 1 0 0 0 1 1 2 1 0 2 2 0 0 19 0 2130.9858 Q6ICQ8;P84095 Q6ICQ8 31 49 ARHG;RHOG Rho-related GTP-binding protein RhoG yes no 2 0.016721 42.209 1 1 1.0036 0.87159 NaN 1 Median NaN NaN NaN 0 0 Median 1.0036 0.87159 NaN 1 0 Median 6246500 4510900 1735600 3596500 3596500 0 2650000 914440 1735600 3926 1672 4036 10350;10351 16213;16214 16214 2 EYIQILER WGHLKELDSQLNEPREYIQILERRRAFSRW SQLNEPREYIQILERRRAFSRWLSCTATPQ R E Y E R R 0 1 0 0 0 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1062.571 P52948;H7C3P6 P52948 1295 1302 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0098174 73.665 2 1.5255 1.5909 NaN 1 Median 1.5255 1.5909 NaN 1 0 Median NaN NaN NaN 0 0 Median 15409000 8780600 6628600 15409000 8780600 6628600 0 0 0 3927 1603 4037 10352;10353 16215;16216;16217 16215 3 EYLDYDDTR LSPEEDQSLLLSQFREYLDYDDTRYHTMQA LLSQFREYLDYDDTRYHTMQAAVDAVARVT R E Y T R Y 0 1 0 3 0 0 1 0 0 0 1 0 0 0 0 0 1 0 2 0 0 0 9 0 1188.4935 Q9BVI4;F5H303 Q9BVI4 173 181 NOC4L Nucleolar complex protein 4 homolog yes no 2 0.0021086 76.679 2 2 0.8916 0.88892 9.655 4 Median 0.86684 0.91634 5.9698 2 0 Median 0.97965 0.82737 11.82 2 0 Median 79842000 38172000 41670000 72666000 34573000 38093000 7175800 3599400 3576400 3928 2007 4038 10354;10355;10356;10357 16218;16219;16220;16221;16222;16223;16224 16221 7 EYLGANWTLEK QTSVATLDETEELPREYLGANWTLEKVFEE ELPREYLGANWTLEKVFEELQATDKKRVLE R E Y E K V 1 0 1 0 0 0 2 1 0 0 2 1 0 0 0 0 1 1 1 0 0 0 11 0 1322.6507 P57740;B3KMK0;H0YG15 P57740 481 491 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.0068943 62.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3929 1621 4039 10358 16225 16225 1 EYLLDMIPPR SLAVHKSSSAVDRQREYLLDMIPPRSIPQS VDRQREYLLDMIPPRSIPQSATWK______ R E Y P R S 0 1 0 1 0 0 1 0 0 1 2 0 1 0 2 0 0 0 1 0 0 0 10 0 1245.6427 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 615 624 GATAD2B;GATAD2A Transcriptional repressor p66-beta;Transcriptional repressor p66-alpha no no 2 0.010492 46.158 1 0.94658 0.93668 NaN 1 Median 0.94658 0.93668 NaN 1 0 Median NaN NaN NaN 0 0 Median 12382000 6227200 6154600 12382000 6227200 6154600 0 0 0 3930 229;591 4040 10359 16226 16226 166 1 EYLPFLNTLK DLVLMVAEKSQKDPKEYLPFLNTLKKMETN QKDPKEYLPFLNTLKKMETNYQRFTIDKYL K E Y L K K 0 0 1 0 0 0 1 0 0 0 3 1 0 1 1 0 1 0 1 0 0 0 10 0 1236.6754 Q8N516;Q4LE38;O95163;F5H2T0;B3KXE7;B4E3I9;Q68DI5;B3KNB2 Q8N516 916 925 IKBKAP;IKBKAP variant protein;DKFZp781H1425 Elongator complex protein 1 yes no 2 0.00095588 78.516 2 1.9071 1.9144 19.149 2 Median 1.9071 1.9144 19.149 2 0 Median NaN NaN NaN 0 0 Median 11789000 4052500 7736500 11789000 4052500 7736500 0 0 0 3931 1419 4041 10360;10361 16227;16228;16229 16228 3 EYLSEEVQAVHK NPTIVNFPITNVDLREYLSEEVQAVHKNTT DLREYLSEEVQAVHKNTTYDLIANIVHDGK R E Y H K N 1 0 0 0 0 1 3 0 1 0 1 1 0 0 0 1 0 0 1 2 0 0 12 0 1430.7042 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;B3KPG7;B3KMG1 B9A018 482 493 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.0024924 96.342 1 2 0.69802 0.65814 7.6058 3 Plateau 0.67038 0.65814 NaN 1 0 Median 0.72463 0.59965 7.612 2 0 Median 27077000 13403000 13674000 23040000 11296000 11744000 4036400 2106800 1929600 3932 1119 4042 10362;10363;10364 16230;16231;16232;16233 16230 3 EYLTGFHK RRPRLVLSFDEEKRREYLTGFHKRKVERKK FDEEKRREYLTGFHKRKVERKKAAIEEIKQ R E Y H K R 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 993.49198 B4DGP7;V9GYY5;A0A024R1M6;Q9UGY1;B3KQ09 B4DGP7 29 36 MGC3731;NOL12 Nucleolar protein 12 yes no 2 0.038104 54.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18156000 0 18156000 18156000 0 18156000 0 0 0 3933 80 4043 10365 16234 16234 1 EYLTTLGQR EAVILLQEIGVLDQREYLTTLGQRLAHIST GVLDQREYLTTLGQRLAHISTDPRLAKAIV R E Y Q R L 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 9 0 1079.5611 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 837 845 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.035184 51.346 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3934 122 4044 10366 16235 16235 1 EYNEDEDPAAR TSAPPSKSRHHEMPREYNEDEDPAARRRKK EMPREYNEDEDPAARRRKKKSYYAKLRQQE R E Y A R R 2 1 1 2 0 0 3 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 11 0 1307.5266 Q9UK43;Q95HA6;B2R5Y4;Q13123;Q9Y3Z5;D6REL4;Q9H4P6;E7EQZ7;D6RCQ4;D6RAY9 Q9UK43 63 73 CSA2;IK;DKFZp564B112 Protein Red yes no 2 0.00026738 89.886 1 1.162 1.2099 NaN 1 Median 1.162 1.2099 NaN 1 0 Median NaN NaN NaN 0 0 Median 5254600 1921500 3333100 5254600 1921500 3333100 0 0 0 3935 838 4045 10367 16236;16237 16237 2 EYNEFAEVFLK ARLFERYGSPGNVSKEYNEFAEVFLKAFAV NVSKEYNEFAEVFLKAFAVGVQQVLLKVLY K E Y L K A 1 0 1 0 0 0 3 0 0 0 1 1 0 2 0 0 0 0 1 1 0 0 11 0 1387.666 O95373 O95373 284 294 IPO7 Importin-7 yes yes 2 0.0012874 68.657 1 1 1.7401 1.6033 43.543 2 Median 2.1625 2.1815 NaN 1 0 Median 1.4002 1.1784 NaN 1 0 Median 9780400 3088400 6692000 7863000 2312300 5550800 1917300 776110 1141200 3936 1424 4046 10368;10369 16238;16239;16240 16238 3 EYPDAQGFAADVR HPMDLSTVKRKMDGREYPDAQGFAADVRLM GREYPDAQGFAADVRLMFSNCYKYNPPDHE R E Y V R L 3 1 0 2 0 1 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 13 0 1437.6525 A0A024R8H6;Q15059;B4DS09;A0A140F1N4 A0A024R8H6 369 381 BRD3 Bromodomain-containing protein 3 yes no 2 0.0023745 69.979 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12897000 12897000 0 11298000 11298000 0 1598600 1598600 0 3937 249 4047 10370;10371;10372 16241;16242;16243;16244 16243 4 EYPFILDAFQR EDYLPLKPRVGKAAKEYPFILDAFQREAIQ KAAKEYPFILDAFQREAIQCVDNNQSVLVS K E Y Q R E 1 1 0 1 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 11 0 1397.698 P42285;A8K6I4;B4E3M6 P42285 135 145 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.0017197 65.347 2 2 0.90539 0.88821 10.447 4 Median 0.87642 0.9299 6.2948 2 0 Median 1.0047 0.8191 11.262 2 0 Median 77239000 39385000 37854000 53832000 27793000 26039000 23407000 11593000 11815000 3938 1563 4048 10373;10374;10375;10376 16245;16246;16247;16248;16249;16250;16251;16252;16253 16245 9 EYQAGDFEAAER ______________________________ AHREYQAGDFEAAERHCMQLWRQEPDNTGV R E Y E R H 3 1 0 1 0 1 3 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 12 0 1384.5895 C9JZL3;Q9H5T3;B4DTL6;O15294 C9JZL3 14 25 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 2 0.0001724 91.549 2 1.2692 1.2823 NaN 1 Median 1.2692 1.2823 NaN 1 0 Median NaN NaN NaN 0 0 Median 9956000 4259800 5696200 9956000 4259800 5696200 0 0 0 3939 1034 4049 10377;10378 16254;16255 16255 2 EYQDAFLFNELK YSLFLDESRSTQYMKEYQDAFLFNELKGET YMKEYQDAFLFNELKGETMDTS________ K E Y L K G 1 0 1 1 0 1 2 0 0 0 2 1 0 2 0 0 0 0 1 0 0 0 12 0 1515.7246 Q9Y230;B3KNL2 Q9Y230 445 456 RUVBL2 RuvB-like 2 yes no 2 4.62E-05 98.943 2 1 0.77763 0.83951 11.122 3 Median 0.77302 0.81076 4.928 2 0 Median 1.2116 0.97351 NaN 1 0 Median 84054000 46260000 37794000 67884000 38724000 29159000 16170000 7535200 8634800 3940 2120 4050 10379;10380;10381 16256;16257;16258;16259;16260;16261 16259 6 EYQDLLNVK DEIQNMKEEMARHLREYQDLLNVKMALDIE MARHLREYQDLLNVKMALDIEIATYRKLLE R E Y V K M 0 0 1 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 9 0 1120.5764 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q9H319;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;Q5RLN2;B4DE66;Q59EM6;B4DR43;Q8TCR7;B3KXJ0;B3KQI5;E7EMV2;B4DJT7;E7ESP9;A5YM63;Q16352;P07196;P07197 V9HWE1 382 390 HEL113;VIM;tmp_locus_29;DES;DKFZp761K0922;NEFM;INA;NEFL Vimentin;Desmin;Alpha-internexin;Neurofilament light polypeptide;Neurofilament medium polypeptide no no 2 2.1239E-05 117.16 2 2 2.0314 1.9981 19.066 4 Median 1.4414 1.6785 3.4042 2 0 Median 2.8253 2.3311 0.54993 2 0 Median 607250000 240040000 367210000 534620000 216910000 317710000 72631000 23128000 49502000 3941 1457 4051 10382;10383;10384;10385 16262;16263;16264;16265;16266;16267;16268;16269;16270;16271 16263 10 EYQELMNIK EALQKAKQDMARLLREYQELMNIKLALDVE MARLLREYQELMNIKLALDVEIATYRKLLE R E Y I K L 0 0 1 0 0 1 2 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 9 0 1166.5642 CON__O95678;O95678 CON__O95678 433 441 KRT75 Keratin, type II cytoskeletal 75 yes no 2 0.0068723 55.902 1 0.69109 0.77792 NaN 1 Median 0.69109 0.77792 NaN 1 0 Median NaN NaN NaN 0 0 Median 121590000 73866000 47726000 121590000 73866000 47726000 0 0 0 + 3942 1147 4052 10386 16272;16273 16272 853 2 EYQELMNVK AALQRAKQDMARQLREYQELMNVKLALDIE MARQLREYQELMNVKLALDIEIATYRKLLE R E Y V K L 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 9 0 1152.5485 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931;Q8IWY7;CON__Q8BGZ7;B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4 CON__P05787 373 381 KRT8;KRT6C;KRT6A Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 0.00024528 102.72 5 4 1.307 1.0493 41.796 9 Median 1.4812 1.673 43.154 5 0 Median 1.0441 0.83204 30.182 4 0 Median 247940000 106870000 141070000 225870000 96133000 129740000 22062000 10736000 11326000 + 3943 1156;859;1154;1180 4053;4054 10387;10388;10389;10390;10391;10392;10393;10394;10395 16274;16275;16276;16277;16278;16279;16280;16281;16282;16283;16284;16285;16286;16287;16288 16276 669 15 EYQELMSVK AALQRGKQDMARQLREYQELMSVKLALDIE MARQLREYQELMSVKLALDIEIATYRKLLE R E Y V K L 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 1 1 0 0 9 0 1125.5376 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 374 382 KRT7 Keratin, type II cytoskeletal 7 no no 2 9.0795E-05 92.439 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17605000 0 17605000 16242000 0 16242000 1362900 0 1362900 + 3944 1171;1158 4055;4056 10396;10397;10398 16289;16290;16291 16289 872 3 EYQEPEVPESNQK NKTESSLLAKLEETKEYQEPEVPESNQKQW TKEYQEPEVPESNQKQWQSKRKSECINQNP K E Y Q K Q 0 0 1 0 0 2 4 0 0 0 0 1 0 0 2 1 0 0 1 1 0 0 13 0 1575.7053 P33981 P33981 373 385 TTK Dual specificity protein kinase TTK yes yes 2 0.0044705 60.342 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3945 1539 4057 10399 16292 16292 1 EYQISAGDFPEVK ELISRLPEIYIQLQREYQISAGDFPEVKAM QREYQISAGDFPEVKAMQEQLENYDFTKFH R E Y V K A 1 0 0 1 0 1 2 1 0 1 0 1 0 1 1 1 0 0 1 1 0 0 13 0 1481.7038 A8K9B9;A0A024R9N6;Q9H223 A8K9B9 348 360 EHD4 EH domain-containing protein 4 yes no 2 0.020733 47.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3679300 0 3679300 3679300 0 3679300 0 0 0 3946 284 4058 10400 16293 16293 1 EYQLVVQTTTEER QGLSEAMNELDAVQREYQLVVQTTTEERRK QREYQLVVQTTTEERRKVGNNLQRLLEMVA R E Y E R R 0 1 0 0 0 2 3 0 0 0 1 0 0 0 0 0 3 0 1 2 0 0 13 0 1594.7839 A8K031;O14777 A8K031 563 575 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.00011524 88.596 1 2 0.8601 0.73871 6.0402 3 Median 0.65375 0.68182 NaN 1 0 Median 0.89197 0.75296 2.7015 2 0 Median 33419000 18393000 15026000 21369000 11727000 9642000 12050000 6666300 5383900 3947 696 4059 10401;10402;10403 16294;16295;16296;16297;16298;16299 16298 6 EYQTQLIQR FNALFVRPHIRGAIREYQTQLIQRVKDDIE IRGAIREYQTQLIQRVKDDIESLHDKFKVQ R E Y Q R V 0 1 0 0 0 3 1 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1177.6091 Q14204 Q14204 603 611 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0085392 67.981 1 1 0.99384 0.85533 NaN 1 Median NaN NaN NaN 0 0 Median 0.99384 0.85533 NaN 1 0 Median 6384700 824430 5560300 4698600 0 4698600 1686100 824430 861680 3948 1729 4060 10404;10405 16300;16301 16300 2 EYSLDTR HVGKVNIFGVESGKKEYSLDTRGKFILSIA FGVESGKKEYSLDTRGKFILSIAYSPDGKY K E Y T R G 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 7 0 882.40831 H0YN81;Q9GZS3;H0YMF9;H0YL19;H3BQA8 H0YN81 141 147 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 0.027367 73.637 1 1.7571 1.7989 NaN 1 Median 1.7571 1.7989 NaN 1 0 Median NaN NaN NaN 0 0 Median 26199000 8748600 17450000 26199000 8748600 17450000 0 0 0 3949 1299 4061 10406 16302 16302 1 EYSSELNAPSQESDSHPR RRDQMIKGAIEVLIREYSSELNAPSQESDS SELNAPSQESDSHPRKKKKEKKEDIFRRFP R E Y P R K 1 1 1 1 0 1 3 0 1 0 1 0 0 0 2 5 0 0 1 0 0 0 18 0 2031.877 P49756;E9PQU5 P49756 217 234 RBM25 RNA-binding protein 25 yes no 3 2.4544E-06 81.51 2 1.1045 1.1221 8.6518 2 Median 1.1045 1.1221 8.6518 2 0 Median NaN NaN NaN 0 0 Median 28743000 13128000 15615000 28743000 13128000 15615000 0 0 0 3950 1587 4062 10407;10408 16303;16304;16305;16306 16306 4 EYTAAVEAK LILDDVAITELSFSREYTAAVEAKQVAQQE ELSFSREYTAAVEAKQVAQQEAQRAQFLVE R E Y A K Q 3 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 9 0 980.48148 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6;U3KPZ5 J3KPX7 192 200 PHB2 Prohibitin-2 yes no 2 0.0016671 82.426 2 1.3856 1.56 NaN 1 Median 1.3856 1.56 NaN 1 0 Median NaN NaN NaN 0 0 Median 112720000 27844000 84876000 112720000 27844000 84876000 0 0 0 3951 1328 4063 10409;10410 16307;16308;16309 16307 3 EYTDVYPEIIER KIPIKRSDMLKDIIKEYTDVYPEIIERAGY IIKEYTDVYPEIIERAGYSLEKVFGIQLKE K E Y E R A 0 1 0 1 0 0 3 0 0 2 0 0 0 0 1 0 1 0 2 1 0 0 12 0 1525.73 Q5H909;A0A024R9Y7;Q9UNF1;Q5H907;B4DX55;B4DWM5;A0A024R254;Q9Y5V3 Q5H909 294 305 MAGED2;MAGED1 Melanoma-associated antigen D2;Melanoma-associated antigen D1 yes no 2 3.1006E-08 109.42 3 1.2724 1.335 NaN 1 Median 1.2724 1.335 NaN 1 0 Median NaN NaN NaN 0 0 Median 36910000 15419000 21490000 36910000 15419000 21490000 0 0 0 3952 292 4064 10411;10412;10413 16310;16311;16312;16313 16311 4 EYTINIHK ______________________________ INEVVTREYTINIHKRIHGVGFKKRAPRAL R E Y H K R 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 0 1 0 1 0 0 0 8 0 1016.5291 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 12 19 RPL31 60S ribosomal protein L31 yes no 1;2 6.5982E-06 147.69 3 2 0.81178 0.74672 14.75 5 Median 0.79753 0.94128 14.256 3 0 Median 0.83356 0.72284 1.1806 2 0 Median 2012500000 1130800000 881680000 1670200000 953190000 717000000 342300000 177620000 164680000 3953 825 4065 10414;10415;10416;10417;10418 16314;16315;16316;16317;16318;16319;16320;16321;16322 16317 9 EYTLDVYR EKLKFIKGTDYQLSKEYTLDVYRLSSVVTQ TDYQLSKEYTLDVYRLSSVVTQHDSKKAGA K E Y Y R L 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 2 1 0 0 8 0 1057.508 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 128 135 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.061251 39.646 1 2.0039 1.745 NaN 1 Median NaN NaN NaN 0 0 Median 2.0039 1.745 NaN 1 0 Median 1802800 681710 1121100 0 0 0 1802800 681710 1121100 3954 567 4066 10419 16323 16323 1 EYTPFPPPQPESQIDK NVNKRKEPKKKTVKKEYTPFPPPQPESQID YTPFPPPQPESQIDKELASGEYFLKANQKK K E Y D K E 0 0 0 1 0 2 2 0 0 1 0 1 0 1 5 1 1 0 1 0 0 0 16 0 1871.8941 Q13601 Q13601 265 280 KRR1 KRR1 small subunit processome component homolog yes yes 2 2.6233E-06 91.784 2 1 0.98847 1.1008 8.3195 3 Median 0.98518 1.106 0.66499 2 0 Median 1.1983 0.95777 NaN 1 0 Median 141810000 70459000 71350000 121400000 61945000 59452000 20411000 8513700 11898000 3955 1717 4067 10420;10421;10422 16324;16325;16326;16327;16328 16327 5 EYVCQLCEK SVSSKKSERGVTAKKEYVCQLCEKPGSLLL GVTAKKEYVCQLCEKPGSLLLCEGPCCGAF K E Y E K P 0 0 0 0 2 1 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1227.5264 O96028;H0Y9U6 O96028 667 675 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.0013917 86.011 2 2 1.1213 1.0362 35.702 4 Median 0.71124 0.73664 11.379 2 0 Median 1.6867 1.3527 0.80878 2 0 Median 53435000 26199000 27235000 42144000 22130000 20014000 11290000 4069100 7221100 3956 1435 4068 10423;10424;10425;10426 16329;16330;16331;16332;16333;16334;16335;16336 16336 8 EYVGIVR ERATRLVKSQQSAGKEYVGIVRLHNAIEGG KSQQSAGKEYVGIVRLHNAIEGGTQLSRAL K E Y V R L 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 2 0 0 7 0 834.45995 O60832;C9IYT0;U5UA77;H7C0M1 O60832 152 158 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.031091 69.234 2 1 0.54692 0.53285 0.84754 2 Median 0.46089 0.52967 NaN 1 0 Median 0.64901 0.53606 NaN 1 0 Median 135880000 115110000 20766000 127720000 109910000 17807000 8158900 5199700 2959300 3957 1398 4069 10427;10428;10429 16337;16338;16339 16337 3 EYVTCHTCR FQQKQIENVLRRYIKEYVTCHTCRSPDTIL LRRYIKEYVTCHTCRSPDTILQKDTRLYFL K E Y C R S 0 1 0 0 2 0 1 0 1 0 0 0 0 0 0 0 2 0 1 1 0 0 9 0 1224.5016 Q6IBR8;B5BU01;P20042;Q96I16 Q6IBR8 277 285 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 2 0.008633 60.91 1 1.0761 1.115 NaN 1 Median 1.0761 1.115 NaN 1 0 Median NaN NaN NaN 0 0 Median 5846000 2748000 3098100 5846000 2748000 3098100 0 0 0 3958 1073 4070 10430 16340 16340 1 EYWNDPELDEGER EIRNPDSLKELTHLKEYWNDPELDEGERFL LKEYWNDPELDEGERFLRDYILNKRYEEEE K E Y E R F 0 1 1 2 0 0 4 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0 13 0 1650.6798 Q8N9T8;A0A024R7C4;B4DUT2;B4DUY9;H0YFD2;B7ZLF4;F8WFC1 Q8N9T8 226 238 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.0029928 65.574 2 1 1.4855 1.2419 NaN 1 Median NaN NaN NaN 0 0 Median 1.4855 1.2419 NaN 1 0 Median 3586600 1382300 2204300 0 0 0 3586600 1382300 2204300 3959 1916 4071 10431;10432;10433 16341;16342;16343 16342 3 FAAATGATPIAGR SVISSRNTGQRAVLKFAAATGATPIAGRFT LKFAAATGATPIAGRFTPGTFTNQIQAAFR K F A G R F 5 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 2 0 0 0 0 0 13 0 1202.6408 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;Q96RS2;F8WD59 C9J9K3 90 102 RPSA;LOC388524 40S ribosomal protein SA yes no 2 1.4632E-18 137.98 3 2 1.5567 1.9647 25.032 4 Linear 1.6529 1.9395 4.1301 2 0 Median 1.5171 1.2603 2.195 2 0 Median 776840000 306080000 470760000 743240000 293020000 450220000 33600000 13057000 20543000 3960 119 4072 10434;10435;10436;10437;10438 16344;16345;16346;16347;16348;16349;16350 16344 6 FAAFFGNVPIFHIPGR DLKLIVTSATMDAEKFAAFFGNVPIFHIPG AAFFGNVPIFHIPGRTFPVDILFSKTPQED K F A G R T 2 1 1 0 0 0 0 2 1 2 0 0 0 4 2 0 0 0 0 1 0 0 16 0 1788.9464 A8K6G9;Q92620;B4DM30;B4DET0;J3KTG2 A8K6G9 692 707 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 3 0.00023273 48.112 2 1.2525 1.3069 NaN 1 Median 1.2525 1.3069 NaN 1 0 Median NaN NaN NaN 0 0 Median 5413800 3051600 2362200 5413800 3051600 2362200 0 0 0 3961 760 4073 10439;10440 16351;16352 16352 2 FAAHLIAGAPSEGSGALKPELSR ELHALRRHYHPIVQRFAAHLIAGAPSEGSG APSEGSGALKPELSRRSATELFEAYSMAEM R F A S R R 5 1 0 0 0 0 2 3 1 1 3 1 0 1 2 3 0 0 0 0 0 0 23 1 2278.207 A8K905;Q8WTT2;B4DXL4 A8K905 707 729 NOC3L Nucleolar complex protein 3 homolog yes no 3;4 0.021962 16.593 3 1.2823 1.0999 9.9515 3 Plateau NaN NaN NaN 0 0 Median 1.2823 1.0999 9.9515 3 0 Plateau 31754000 15175000 16580000 0 0 0 31754000 15175000 16580000 3962 780 4074 10441;10442;10443 16353;16354;16355;16356;16357 16354 5 FAALDNEEEDKEEEIIK GKEEKSKGKAKPQNKFAALDNEEEDKEEEI ALDNEEEDKEEEIIKEKEPPKQGKEKAKKA K F A I K E 2 0 1 2 0 0 6 0 0 2 1 2 0 1 0 0 0 0 0 0 0 0 17 1 2020.9477 Q8NE71;Q2L6I2;B4DNU2;Q5STZ8 Q8NE71 193 209 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 2.4029E-09 103.5 2 2 0.60061 0.59388 23.235 4 Median 0.61772 0.72203 13.05 2 0 Median 0.58825 0.4998 9.8076 2 0 Median 120100000 74457000 45645000 96132000 60825000 35306000 23970000 13632000 10339000 3963 1926 4075 10444;10445;10446;10447 16358;16359;16360;16361;16362;16363 16359 6 FAALITVLALAEK YQILLKTRDSSPKVRFAALITVLALAEKLK VRFAALITVLALAEKLKENYIVLLPESIPF R F A E K L 4 0 0 0 0 0 1 0 0 1 3 1 0 1 0 0 1 0 0 1 0 0 13 0 1358.8173 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 2082 2094 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.6987E-05 93.258 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20038000 0 20038000 20038000 0 20038000 0 0 0 3964 897 4076 10448;10449 16364;16365 16365 2 FAANINK ALVAVGDHASKQMVKFAANINKESIVDVEG HASKQMVKFAANINKESIVDVEGVVRKVNQ K F A N K E 2 0 2 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 776.41809 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9;H7C278 D3DP78 71 77 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.053226 65.263 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3965 610 4077 10450 16366 16366 1 FAAQNLHQNLIR YFAVFDGHGGIRASKFAAQNLHQNLIRKFP ASKFAAQNLHQNLIRKFPKGDVISVEKTVK K F A I R K 2 1 2 0 0 2 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 0 12 0 1423.7684 E9PC05;Q9H0C8 E9PC05 160 171 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 3 0.0034693 54.343 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2878300 0 2878300 2878300 0 2878300 0 0 0 3966 1230 4078 10451 16367 16367 1 FACHSASLTVR ELDNMPLRGKQLRVRFACHSASLTVRNLPQ LRVRFACHSASLTVRNLPQYVSNELLEEAF R F A V R N 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 1 0 0 11 0 1247.6081 A8K525;A0A0S2Z4Z9;Q15233;C9IZL7;C9JYS8 A8K525 143 153 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 0.00042951 79.16 3 1.2242 1.2342 7.3123 2 Median 1.2242 1.2342 7.3123 2 0 Median NaN NaN NaN 0 0 Median 57243000 18419000 38824000 57243000 18419000 38824000 0 0 0 3967 573 4079 10452;10453;10454 16368;16369;16370;16371 16370 4 FADDTYTESYISTIGVDFK LIGDSGVGKSCLLLRFADDTYTESYISTIG TYTESYISTIGVDFKIRTIELDGKTIKLQI R F A F K I 1 0 0 3 0 0 1 1 0 2 0 1 0 2 0 2 3 0 2 1 0 0 19 0 2170.9946 E9PLD0;Q9H0U4;B7Z8M7;Q5U0I6;P62820;Q9H1C9 E9PLD0 28 46 RAB1B;RAB1A Ras-related protein Rab-1B;Ras-related protein Rab-1A yes no 2 6.1246E-12 103.85 2 1 1.4956 1.5196 1.1137 2 Median 1.4956 1.5196 1.1137 2 0 Median NaN NaN NaN 0 0 Median 27143000 11760000 15383000 25420000 11760000 13660000 1723200 0 1723200 3968 1246 4080 10455;10456;10457 16372;16373;16374;16375 16372 4 FADFTVYR RKLEMEDYPSFMAKRFADFTVYRNRTLQKW PSFMAKRFADFTVYRNRTLQKWHDKTKLAS R F A Y R N 1 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 1 0 1 1 0 0 8 0 1017.492 Q9NY61 Q9NY61 356 363 AATF Protein AATF yes yes 2 0.0058564 89.142 1 0.83041 0.89119 NaN 1 Median 0.83041 0.89119 NaN 1 0 Median NaN NaN NaN 0 0 Median 25389000 13580000 11810000 25389000 13580000 11810000 0 0 0 3969 2080 4081 10458 16376 16376 1 FADGEVVR ______________________________ ______________________________ K F A V R G 1 1 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 8 0 891.44503 Q14739;A0A024R3R5;C9JXK0;C9JES9;B4E0Z3 Q14739 6 13 LBR Lamin-B receptor yes no 2 0.028279 53.351 1 1.544 1.6888 NaN 1 Median 1.544 1.6888 NaN 1 0 Median NaN NaN NaN 0 0 Median 34565000 13302000 21263000 34565000 13302000 21263000 0 0 0 3970 1743 4082 10459 16377 16377 1 FADIGNTVK TLAKCHEFLIFEDRKFADIGNTVKKQYEGG IFEDRKFADIGNTVKKQYEGGIFKIASWAD K F A V K K 1 0 1 1 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 0 9 0 963.50255 A8K5J1;P11172;B5LY71;B5LY70;B5LY64;E9PFD2;B5LY67 A8K5J1 315 323 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase;Orotidine 5-phosphate decarboxylase yes no 2 0.0055262 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3971 749 4083 10460 16378 16378 1 FADLSEAANR AAKNLQEAEEWYKSKFADLSEAANRNNDAL WYKSKFADLSEAANRNNDALRQAKQESTEY K F A N R N 3 1 1 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1092.52 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 295 304 HEL113;VIM Vimentin yes no 2 4.8926E-08 116.05 2 2 2.2863 2.2853 29.931 4 Median 1.5014 1.7668 2.5095 2 0 Median 3.4337 2.9629 2.8366 2 0 Median 1044900000 400630000 644300000 977670000 385810000 591850000 67267000 14821000 52445000 3972 1457 4084 10461;10462;10463;10464 16379;16380;16381;16382;16383;16384;16385;16386 16381 8 FAEALGSTEAK ITKLRKMVDQLFCKKFAEALGSTEAKAVPY FCKKFAEALGSTEAKAVPYQKFEAHPNDLY K F A A K A 3 0 0 0 0 0 2 1 0 0 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1122.5557 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 437 447 GTF2I General transcription factor II-I yes no 2 0.0075017 57.174 1 2 1.0528 0.99962 18.221 2 Median 1.0075 1.1371 NaN 1 0 Median 1.1001 0.87878 NaN 1 0 Median 69724000 35712000 34011000 65554000 34281000 31273000 4169300 1430900 2738400 3973 789 4085 10465;10466;10467 16387;16388;16389 16388 2 FAEDNFNNTYISTIGIDFK LIGDSGVGKTCLIIRFAEDNFNNTYISTIG NFNNTYISTIGIDFKIRTVDIEGKKIKLQV R F A F K I 1 0 3 2 0 0 1 1 0 3 0 1 0 3 0 1 2 0 1 0 0 0 19 0 2208.0375 A0A024RB27;Q504R6;P51153;D3DV69 A0A024RB27 28 46 hCG_24991;RAB13;hCG_1996054 Ras-related protein Rab-13 yes no 2 0.010443 25.718 1 1.3744 1.386 NaN 1 Median 1.3744 1.386 NaN 1 0 Median NaN NaN NaN 0 0 Median 7091000 2885100 4205900 7091000 2885100 4205900 0 0 0 3974 322 4086 10468 16390 16390 1 FAEEFYSFR PEKFALENFTVSAAKFAEEFYSFRRRKTIG TVSAAKFAEEFYSFRRRKTIGGKCREYRRR K F A F R R 1 1 0 0 0 0 2 0 0 0 0 0 0 3 0 1 0 0 1 0 0 0 9 0 1194.5346 A8K8X5;A0A024RA51;Q96GN5 A8K8X5 293 301 CDCA7L Cell division cycle-associated 7-like protein yes no 2 0.0076946 69.716 2 1 0.98869 0.842 NaN 1 Median NaN NaN NaN 0 0 Median 0.98869 0.842 NaN 1 0 Median 18018000 16863000 1154300 15189000 15189000 0 2829000 1674600 1154300 3975 295 4087 10469;10470;10471 16391;16392;16393 16392 3 FAEEQLLK ______________________________ VKSRGMKFAEEQLLKHGWTQGKGLGRKENG K F A L K H 1 0 0 0 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 976.52295 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 14 21 GPATCH4 G patch domain-containing protein 4 yes no 2 0.013762 64.567 2 2 1.5405 1.4136 20.815 4 Median 1.0978 1.2014 0.24438 2 0 Median 2.144 1.7174 4.7642 2 0 Median 114570000 52115000 62454000 91578000 44750000 46828000 22992000 7365200 15627000 3976 1820 4088 10472;10473;10474;10475 16394;16395;16396;16397;16398 16394 5 FAELETILGDIDR KFLEFGPENCTSWIKFAELETILGDIDRAR IKFAELETILGDIDRARAIYELAISQPRLD K F A D R A 1 1 0 2 0 0 2 1 0 2 2 0 0 1 0 0 1 0 0 0 0 0 13 0 1490.7617 Q69YP1;Q5JY65;Q9BZJ0 Q69YP1 526 538 DKFZp762M013;CRNKL1 Crooked neck-like protein 1 yes no 2 9.9151E-09 115.18 1 0.91028 0.91445 NaN 1 Median 0.91028 0.91445 NaN 1 0 Median NaN NaN NaN 0 0 Median 6661600 3820500 2841100 6661600 3820500 2841100 0 0 0 3977 1810 4089 10476 16399;16400 16400 2 FAEVTQEVEVARPVDK NPKAEDYEENLQVMRFAEVTQEVEVARPVD AEVTQEVEVARPVDKAICGLTPGRRYRNQP R F A D K A 2 1 0 1 0 1 3 0 0 0 0 1 0 1 1 0 1 0 0 4 0 0 16 1 1815.9367 H7BYN4;Q02241 H7BYN4 429 444 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 3 6.0808E-05 76.85 2 2 0.7665 0.90451 3.0193 3 Median 0.76378 0.89158 2.0367 2 0 Median 1.127 0.93351 NaN 1 0 Median 75346000 40914000 34432000 66872000 37735000 29137000 8474500 3179400 5295000 3978 1312 4090 10477;10478;10479;10480 16401;16402;16403;16404 16402 4 FAEYGEIK TGVHEEATEEDIHDKFAEYGEIKNIHLNLD EEDIHDKFAEYGEIKNIHLNLDRRTGYLKG K F A I K N 1 0 0 0 0 0 2 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 0 955.4651 A0A023T787;Q9Y5S9;A0A0J9YW13 A0A023T787 93 100 RBM8;RBM8A RNA-binding protein 8A yes no 2 0.0090807 75.854 2 2 2.0121 1.6517 27.535 4 Linear 1.9764 2.1602 11.085 2 0 Median 1.5829 1.3585 0.77398 2 0 Median 90659000 29917000 60742000 88157000 28805000 59353000 2501800 1112200 1389600 3979 4 4091 10481;10482;10483;10484 16405;16406;16407;16408 16406 4 FAGASIK AIIGKQGQHIKQLSRFAGASIKIAPAEAPD QHIKQLSRFAGASIKIAPAEAPDAKVRMVI R F A I K I 2 0 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 0 0 7 0 692.38573 O00425;B4DKT5;F8W930;Q9Y6M1 O00425 434 440 IGF2BP3;IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2 no no 2 0.041494 58.981 1 1.4591 1.5578 NaN 1 Median 1.4591 1.5578 NaN 1 0 Median NaN NaN NaN 0 0 Median 20983000 7804100 13179000 20983000 7804100 13179000 0 0 0 3980 1364;1267 4092 10485 16409 16409 1 FAGGDYTTTIEAFISASGR LAIPVVKGRKTEKEKFAGGDYTTTIEAFIS DYTTTIEAFISASGRAIQGGTSHHLGQNFS K F A G R A 3 1 0 1 0 0 1 3 0 2 0 0 0 2 0 2 3 0 1 0 0 0 19 0 1962.9323 P07814;B4DP50 P07814 1216 1234 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 8.2396E-05 48.704 2 2.4078 2.426 11.958 2 Median 2.4078 2.426 11.958 2 0 Median NaN NaN NaN 0 0 Median 16265000 5630400 10634000 16265000 5630400 10634000 0 0 0 3981 1454 4093 10486;10487 16410;16411 16411 2 FAGVDIR QYKLLEPVLLLGKERFAGVDIRVRVKGGGH VLLLGKERFAGVDIRVRVKGGGHVAQIYAI R F A I R V 1 1 0 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 776.41809 P62249;M0R210;M0R3H0;A0A087WZ27;M0R1M5;M0QX76;Q6IPX4;B4DP32 P62249 63 69 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 0.026909 82.386 1 0.98845 1.1498 NaN 1 Median 0.98845 1.1498 NaN 1 0 Median NaN NaN NaN 0 0 Median 401160000 191070000 210090000 401160000 191070000 210090000 0 0 0 3982 1636 4094 10488 16412;16413 16413 2 FAHLLQPIR ______________________________ EDVEARFAHLLQPIRDLTKNWEVDVAAQLG R F A I R D 1 1 0 0 0 1 0 0 1 1 2 0 0 1 1 0 0 0 0 0 0 0 9 0 1093.6396 A0A0A6YYG7;Q6IBW4;E5RJN3;E5RJL4;F8WAR3 A0A0A6YYG7 8 16 NCAPH2 Condensin-2 complex subunit H2 yes no 3 0.00034371 89.752 2 1 0.9216 1.0014 27.334 3 Median 0.91438 0.97029 4.4653 2 0 Median 1.8439 1.5529 NaN 1 0 Median 54394000 26623000 27770000 51334000 25583000 25751000 3059700 1040500 2019200 3983 491 4095 10489;10490;10491 16414;16415;16416;16417 16415 4 FAIGSQVSEHSIIK DQEMLSRIEKQLKRRFAIGSQVSEHSIIKD RFAIGSQVSEHSIIKDFTKQKYPEHAIHKV R F A I K D 1 0 0 0 0 1 1 1 1 3 0 1 0 1 0 3 0 0 0 1 0 0 14 0 1514.8093 B1AHB1;Q53FG5;B1AHB0;A8K521;P33992;B4DQ39;B3KVF0 B1AHB1 640 653 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 3 0.01441 39.005 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16511000 0 16511000 16511000 0 16511000 0 0 0 3984 745 4096 10492 16418 16418 1 FAIYSAR SASEQDNLQTTLERRFAIYSARDDEELVHI LQTTLERRFAIYSARDDEELVHIFLLILRA R F A A R D 2 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 7 0 826.43374 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPI9;D2CPJ0;D2CPK4;D2CPK2 A0A024R2M8 287 293 XPC DNA repair protein complementing XP-C cells yes no 2 0.00091924 118.01 2 0.49596 0.53259 NaN 1 Median 0.49596 0.53259 NaN 1 0 Median NaN NaN NaN 0 0 Median 64386000 47788000 16598000 64386000 47788000 16598000 0 0 0 3985 118 4097 10493;10494 16419;16420 16420 2 FALACNASDK QALRRTMEIYSKTTRFALACNASDKIIEPI SKTTRFALACNASDKIIEPIQSRCAVLRYT R F A D K I 3 0 1 1 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1095.5019 Q75MT5;B5BUD2;P35250;A0A087WVY3;H7C5P4 Q75MT5 133 142 RFC2 Replication factor C subunit 2 yes no 2 0.0093157 64.04 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14190000 0 14190000 14190000 0 14190000 0 0 0 3986 1079 4098 10495;10496 16421;16422 16421 2 FALENFTVSAAK TRRMNPTRSARPPEKFALENFTVSAAKFAE PEKFALENFTVSAAKFAEEFYSFRRRKTIG K F A A K F 3 0 1 0 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 12 0 1296.6714 A8K8X5;A0A024RA51;Q96GN5 A8K8X5 281 292 CDCA7L Cell division cycle-associated 7-like protein yes no 2 0.00019108 80.763 2 1.2224 0.98034 11.848 2 Median NaN NaN NaN 0 0 Median 1.2224 0.98034 11.848 2 0 Median 9406800 4252300 5154500 0 0 0 9406800 4252300 5154500 3987 295 4099 10497;10498 16423;16424;16425 16425 3 FALGIFAINEAVESGDVGK GGIWQSNKDTQEAQKFALGIFAINEAVESG IFAINEAVESGDVGKTLSALRSPDVGLYGV K F A G K T 3 0 1 1 0 0 2 3 0 2 1 1 0 2 0 1 0 0 0 2 0 0 19 0 1935.9942 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;H0YLE8;B4E2M0;Q6P1N4 A4QPB0 623 641 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0013844 51.774 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2092200 0 2092200 2092200 0 2092200 0 0 0 3988 352 4100 10499 16426 16426 1 FALGSVVAVTK EMVLPGFPDADSFVKFALGSVVAVTKASGG SFVKFALGSVVAVTKASGGLPQFGDEYDFY K F A T K A 2 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 3 0 0 11 0 1090.6386 Q01780;B4DKG8;B4DFE4;Q59G73;K7EJ37 Q01780 38 48 EXOSC10 Exosome component 10 yes no 2 0.00026225 90.108 2 1 0.83779 0.88489 3.0285 3 Median 0.82812 0.8778 4.2323 2 0 Median 1.1015 0.88489 NaN 1 0 Median 76453000 40941000 35512000 68630000 37537000 31093000 7823500 3404400 4419200 3989 1676 4101 10500;10501;10502 16427;16428;16429;16430;16431;16432 16428 6 FALPSPQHILGLPVGQHIYLSAR LIDREIISHDTRRFRFALPSPQHILGLPVG ILGLPVGQHIYLSARIDGNLVVRPYTPISS R F A A R I 2 1 0 0 0 2 0 2 2 2 4 0 0 1 3 2 0 0 1 1 0 0 23 0 2513.3907 A0A024R4X0;P00387;B1AHF3 A0A024R4X0 52 74 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 4 2.1644E-08 65.454 1 1 0.76374 0.70895 17.614 2 Median 0.78179 0.80298 NaN 1 0 Median 0.74611 0.62593 NaN 1 0 Median 15001000 8252900 6748600 4952400 2316400 2636000 10049000 5936500 4112600 3990 164 4102 10503;10504 16433;16434 16434 2 FALTFGLDQLK RSSSTFSGIKELARRFALTFGLDQLKTREA LARRFALTFGLDQLKTREAIAMLHKDGIEF R F A L K T 1 0 0 1 0 1 0 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 11 0 1251.6863 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;B4DQ46 B2R8Y6 886 896 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2 Cohesin subunit SA-2 yes no 2 3.8072E-05 99.815 3 1 0.79043 0.77775 40.369 3 Median 0.75913 0.76724 1.9242 2 0 Median 1.7953 1.5432 NaN 1 0 Median 22818000 13732000 9086300 21703000 13329000 8373500 1115600 402830 712800 3991 863 4103 10505;10506;10507;10508 16435;16436;16437;16438;16439;16440 16439 6 FALVAPVQAEEDSGNVNGK WSLLSEKQRARYNTKFALVAPVQAEEDSGN APVQAEEDSGNVNGKKRNHTKRIQDPTEDA K F A G K K 3 0 2 1 0 1 2 2 0 0 1 1 0 1 1 1 0 0 0 3 0 0 19 0 1943.9589 O96028;Q05CW4;H0Y9L4 O96028 506 524 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 2.452E-05 59.294 2 2 1.4511 1.3197 28.303 4 Median 0.96464 1.0042 11.845 2 0 Median 2.0237 1.6153 1.781 2 0 Median 44364000 21763000 22601000 35701000 18872000 16830000 8662600 2890700 5771900 3992 1435 4104 10509;10510;10511;10512 16441;16442;16443;16444;16445;16446 16444 6 FALVTPK TVFTPKTSPENVQDRFALVTPKKEGHWDCS SPENVQDRFALVTPKKEGHWDCSICLVRNE R F A P K K 1 0 0 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 7 0 774.46398 P49792 P49792 1408 1414 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.032103 74.415 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3978000 0 3978000 3978000 0 3978000 0 0 0 3993 1588 4105 10513 16447 16447 1 FANHSVNPNCYAK NDFVVDATRKGNKIRFANHSVNPNCYAKVM IRFANHSVNPNCYAKVMMVNGDHRIGIFAK R F A A K V 2 0 3 0 1 0 0 0 1 0 0 1 0 1 1 1 0 0 1 1 0 0 13 0 1520.683 A0A090N8E9;Q15910;F2YMM1;S4S3R8;Q75MP9;Q75MQ0;A0A0A0MSY9;Q92800 A0A090N8E9 691 703 EZH2;EZH1 Histone-lysine N-methyltransferase EZH2;Histone-lysine N-methyltransferase EZH1 no no 3 3.8371E-05 61.11 1 2 1.9169 1.5147 26.878 3 Median 0.89337 0.95402 NaN 1 0 Median 1.9252 1.5196 0.45895 2 0 Median 30454000 15564000 14890000 21007000 12073000 8933600 9447600 3490700 5956900 3994 456;483 4106 10514;10515;10516 16448;16449;16450;16451 16448 4 FANSLVGVQQQLQAFNTYR LEWIEQTIIILNNRKFANSLVGVQQQLQAF LVGVQQQLQAFNTYRTVEKPPKFTEKGNLE K F A Y R T 2 1 2 0 0 4 0 1 0 0 2 0 0 2 0 1 1 0 1 2 0 0 19 0 2183.1124 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1 D6W5C0 244 262 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0001624 47.037 1 1 4.3027 3.643 NaN 1 Median NaN NaN NaN 0 0 Median 4.3027 3.643 NaN 1 0 Median 12287000 821010 11466000 7297100 0 7297100 4990000 821010 4169000 3995 415 4107 10517;10518 16452;16453 16453 2 FANYIDK TRTNEKVELQELNDRFANYIDKVRFLEQQN ELQELNDRFANYIDKVRFLEQQNKILLAEL R F A D K V 1 0 1 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 869.42832 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;A0A1B0GUA0;A0A1B0GTT5 V9HWE1 114 120 HEL113;VIM Vimentin yes no 2 0.02738 73.616 2 2 2.2517 2.18 36.285 4 Median 1.3547 1.5904 1.3452 2 0 Median 3.7119 2.9809 0.998 2 0 Median 843010000 338540000 504470000 800820000 330050000 470770000 42189000 8483800 33705000 3996 1457 4108 10519;10520;10521;10522 16454;16455;16456;16457;16458 16454 5 FAQIDEK VEQMKEEKKKQIEQKFAQIDEKTEKAKEER KKKQIEQKFAQIDEKTEKAKEERLAEEKAK K F A E K T 1 0 0 1 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 849.42323 Q9NQS7;B3KPD3 Q9NQS7 603 609 INCENP Inner centromere protein yes no 2 0.013841 105.39 3 2 2.1451 1.7394 22.073 3 Median 1.0399 1.1991 NaN 1 0 Median 2.1725 1.7568 1.4056 2 0 Median 373930000 229580000 144350000 325230000 213430000 111790000 48703000 16150000 32553000 3997 2059 4109 10523;10524;10525;10526;10527 16459;16460;16461;16462;16463;16464;16465;16466 16459 8 FAQLEFQLGDAER LECLPSKEHVDVIAKFAQLEFQLGDAERAK AKFAQLEFQLGDAERAKAIFENTLSTYPKR K F A E R A 2 1 0 1 0 2 2 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 13 0 1522.7416 Q14690 Q14690 1767 1779 PDCD11 Protein RRP5 homolog yes yes 2 0.0001182 106.62 2 2 1.2075 1.1941 3.1475 4 Median 1.0675 1.1943 3.1209 2 0 Median 1.3821 1.1834 4.3751 2 0 Median 205560000 91155000 114400000 152650000 69042000 83605000 52913000 22113000 30800000 3998 1741 4110 10528;10529;10530;10531 16467;16468;16469;16470;16471;16472;16473;16474 16471 8 FAQPGSFEYEYAMR IKNQQFHKEREQPPRFAQPGSFEYEYAMRW RFAQPGSFEYEYAMRWKALIEMEKQQQDQV R F A M R W 2 1 0 0 0 1 2 1 0 0 0 0 1 2 1 1 0 0 2 0 0 0 14 0 1694.7399 A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9JYS8 A8K525 257 270 NONO Non-POU domain-containing octamer-binding protein yes no 2 7.2219E-05 76.927 1 2.0192 2.0652 NaN 1 Median 2.0192 2.0652 NaN 1 0 Median NaN NaN NaN 0 0 Median 31603000 11454000 20149000 31603000 11454000 20149000 0 0 0 3999 573 4111 10532 16475 16475 426 1 FAQSTNLK GDRPYVCPFDGCNKKFAQSTNLKSHILTHA FDGCNKKFAQSTNLKSHILTHAKAKNNQ__ K F A L K S 1 0 1 0 0 1 0 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 8 0 907.47633 P25490;H0YJV7;O15391 P25490 394 401 YY1;YY2 Transcriptional repressor protein YY1;Transcription factor YY2 yes no 2 0.0010071 117.16 1 0.75903 0.77288 NaN 1 Median 0.75903 0.77288 NaN 1 0 Median NaN NaN NaN 0 0 Median 14178000 6981800 7195700 14178000 6981800 7195700 0 0 0 4000 1516 4112 10533 16476 16476 1 FASASIK AIIGKKGQHIKQLSRFASASIKIAPPETPD QHIKQLSRFASASIKIAPPETPDSKVRMVI R F A I K I 2 0 0 0 0 0 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 0 7 0 722.39629 Q9NZI8;D3DTW3 Q9NZI8 434 440 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 0.02688 74.415 1 2.8801 2.8748 NaN 1 Median 2.8801 2.8748 NaN 1 0 Median NaN NaN NaN 0 0 Median 14970000 3422300 11548000 14970000 3422300 11548000 0 0 0 4001 2087 4113 10534 16477 16477 1 FASCVDASGGLK LKHHDGRNNGDAIVKFASCVDASGGLKCHR IVKFASCVDASGGLKCHRSFMGSRFIEVMQ K F A L K C 2 0 0 1 1 0 0 2 0 0 1 1 0 1 0 2 0 0 0 1 0 0 12 0 1210.5652 B9ZVT1;Q8IXT5 B9ZVT1 201 212 RBM12B RNA-binding protein 12B yes no 2 0.0010242 62.303 1 1.165 1.1843 NaN 1 Median 1.165 1.1843 NaN 1 0 Median NaN NaN NaN 0 0 Median 13332000 6136800 7195300 13332000 6136800 7195300 0 0 0 4002 1122 4114 10535 16478 16478 1 FASENDLPEWK EDEEELFKMRAKLFRFASENDLPEWKERGT KLFRFASENDLPEWKERGTGDVKLLKHKEK R F A W K E 1 0 1 1 0 0 2 0 0 0 1 1 0 1 1 1 0 1 0 0 0 0 11 0 1334.6143 A0A140VK94;F6WQW2;P43487;C9JXG8;D3DX26;C9JJ34;C9JDM3;B7Z6U1;C9JGV6;B4DE76;C9JIC6 A0A140VK94 58 68 RANBP1 Ran-specific GTPase-activating protein yes no 2 0.00043721 78.556 2 1 3.3267 3.3704 8.1655 3 Plateau 3.3195 3.3486 2.2979 2 0 Median 3.69 2.9152 NaN 1 0 Median 60909000 14628000 46281000 57853000 13997000 43856000 3056000 631260 2424700 4003 621 4115 10536;10537;10538 16479;16480;16481 16480 3 FASFIDK VKAQEREQIKTLNNKFASFIDKVRFLEQQN QIKTLNNKFASFIDKVRFLEQQNQVLQTKW K F A D K V 1 0 0 1 0 0 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 7 0 826.4225 CON__P05787;P05787;F8VUG2;F8W1U3;CON__Q9H552;CON__Q9NSB2;CON__Q6ISB0;Q9NSB2;H0YHD9;F8VS61;CON__P08729;CON__Q9DCV7;CON__Q3KNV1;P08729;CON__P35908;P35908;Q01546;CON__Q01546;CON__P07744;CON__Q6NXH9;CON__Q9R0H5;Q0IIN1;CON__Q7Z794;Q7Z794;CON__O95678;O95678;CON__Q8BGZ7;B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4;CON__Q5XKE5;Q5XKE5;CON__P13647;P13647;B4E1T1;F8W0C6;CON__Q7RTS7;CON__Q32MB2;F8W1S1;Q7RTS7;Q86Y46 CON__P35908 195 201 KRT8;KRT84;KRT72;KRT77;KRT7;KRT2;KRT76;KRT75;KRT6C;KRT6A;KRT79;KRT5;KRT74;KRT73 Keratin, type II cytoskeletal 8;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73 no no 2 0.020239 94.262 2 2 0.66639 0.78606 30.978 4 Linear 0.66534 0.78522 1.294 2 0 Median 0.57041 0.4597 3.2895 2 0 Median 897820000 540220000 357600000 852840000 511730000 341100000 44987000 28491000 16497000 + 4004 1166;1156;1171;1158;1162;859;1154;1147;1180;1175;1170 4116 10539;10540;10541;10542 16482;16483;16484;16485;16486;16487;16488;16489 16483 8 FASFPDYLVIQIK STALQAKSVAVKTTRFASFPDYLVIQIKKF TRFASFPDYLVIQIKKFTFGLDWVPKKLDV R F A I K K 1 0 0 1 0 1 0 0 0 2 1 1 0 2 1 1 0 0 1 1 0 0 13 0 1539.8337 A0A140VJZ1;P45974 A0A140VJZ1 562 574 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 3.1931E-06 108.67 2 3.7681 3.8011 NaN 1 Median 3.7681 3.8011 NaN 1 0 Median NaN NaN NaN 0 0 Median 19095000 2708400 16386000 19095000 2708400 16386000 0 0 0 4005 613 4117 10543;10544 16490;16491 16491 2 FASGGCDNLIK LIDHPSGQKPNYIKRFASGGCDNLIKLWKE YIKRFASGGCDNLIKLWKEEEDGQWKEEQK R F A I K L 1 0 1 1 1 0 0 2 0 1 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1180.5547 Q53GB2;A0A0C4DFR6;P55735;A8MXL6;Q59FA6 Q53GB2 182 192 SEC13 Protein SEC13 homolog yes no 2 0.0012067 69.275 1 1.9418 1.9928 NaN 1 Median 1.9418 1.9928 NaN 1 0 Median NaN NaN NaN 0 0 Median 17748000 6258500 11489000 17748000 6258500 11489000 0 0 0 4006 506 4118 10545 16492;16493 16493 2 FASLEFSPGSK VGKFDWRQQYVGKVKFASLEFSPGSKKLVV GKVKFASLEFSPGSKKLVVATEKNVIAALN K F A S K K 1 0 0 0 0 0 1 1 0 0 1 1 0 2 1 3 0 0 0 0 0 0 11 0 1168.5764 Q8N766;Q5TG59 Q8N766 42 52 EMC1 ER membrane protein complex subunit 1 yes no 2 0.025409 51.276 1 0.697 0.61339 NaN 1 Median NaN NaN NaN 0 0 Median 0.697 0.61339 NaN 1 0 Median 1154200 699790 454420 0 0 0 1154200 699790 454420 4007 1913 4119 10546 16494 16494 1 FASVLPEYLK SMENNKEAKLYTINKFASVLPEYLKVFKDD YTINKFASVLPEYLKVFKDDRCKIPLFMLM K F A L K V 1 0 0 0 0 0 1 0 0 0 2 1 0 1 1 1 0 0 1 1 0 0 10 0 1165.6383 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DXB7 Q86XI2 651 660 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.0029629 73.985 2 2 1.4225 1.3161 23.496 4 Median 0.9811 1.0752 0.27972 2 0 Median 2.0237 1.6151 0.64858 2 0 Median 166590000 76276000 90317000 131250000 64717000 66534000 35342000 11559000 23783000 4008 1887 4120 10547;10548;10549;10550 16495;16496;16497;16498;16499;16500;16501 16495 7 FASWALESDNNTALLLSK WTMTKIQKHQEHILRFASWALESDNNTALL WALESDNNTALLLSKKLIYFQLHRALKMIV R F A S K K 3 0 2 1 0 0 1 0 0 0 4 1 0 1 0 3 1 1 0 0 0 0 18 0 1979 B2R8R5;Q13263 B2R8R5 348 365 TRIM28 Transcription intermediary factor 1-beta yes no 2 1.1716E-23 137.62 2 2 1.0426 0.95385 20.426 4 Median 1.0967 1.1626 14.398 2 0 Median 1.0403 0.84344 3.8099 2 0 Median 87845000 40931000 46914000 67423000 32078000 35344000 20422000 8852700 11569000 4009 862 4121 10551;10552;10553;10554 16502;16503;16504;16505;16506 16503 5 FASYLTFSPSEVK DMLRVEQVKIHAGPKFASYLTFSPSEVKSL PKFASYLTFSPSEVKSLRTEYGDLELCIEV K F A V K S 1 0 0 0 0 0 1 0 0 0 1 1 0 2 1 3 1 0 1 1 0 0 13 0 1474.7344 P54886 P54886 650 662 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 5.6769E-05 96.171 2 2 1.9013 1.7391 26.873 4 Median 2.0379 2.1725 0.78437 2 0 Median 1.7047 1.3659 3.4872 2 0 Median 81502000 25456000 56046000 68585000 20852000 47733000 12917000 4603400 8313500 4010 1611 4122 10555;10556;10557;10558 16507;16508;16509;16510;16511;16512;16513;16514 16507 8 FATDGEGYKPCDPQVIR IQAERVRGVNASAQKFATDGEGYKPCDPQV TDGEGYKPCDPQVIRDRVAHMEFCYQELCQ K F A I R D 1 1 0 2 1 1 1 2 0 1 0 1 0 1 2 0 1 0 1 1 0 0 17 1 1951.9098 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1 D6W5C0 508 524 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.036791 35.329 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2664800 0 2664800 1749900 0 1749900 914810 0 914810 4011 415 4123 10559;10560 16515;16516 16515 2 FATHAAALSVR ELDDTPMRGRQLRVRFATHAAALSVRNLSP LRVRFATHAAALSVRNLSPYVSNELLEEAF R F A V R N 4 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1142.6196 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 293 303 SFPQ Splicing factor, proline- and glutamine-rich yes no 3 0.0027005 42.862 2 1.7002 1.965 NaN 1 Median 1.7002 1.965 NaN 1 0 Median NaN NaN NaN 0 0 Median 70165000 31680000 38486000 70165000 31680000 38486000 0 0 0 4012 1510 4124 10561;10562 16517;16518 16518 2 FAVALDSEQNNIHVK VTVRHQAVTRKKDNRFAVALDSEQNNIHVK FAVALDSEQNNIHVKDIVKVIDGPHSGREG R F A V K D 2 0 2 1 0 1 1 0 1 1 1 1 0 1 0 1 0 0 0 2 0 0 15 0 1683.858 B4E0Q4;B4DZJ7;O00267;B4DJK4 B4E0Q4 442 456 SUPT5H Transcription elongation factor SPT5 yes no 3 0.040906 18.321 1 1.9659 1.9623 NaN 1 Median 1.9659 1.9623 NaN 1 0 Median NaN NaN NaN 0 0 Median 14965000 4647600 10317000 14965000 4647600 10317000 0 0 0 4013 1056 4125 10563 16519 16519 1 FAVGIVIGR NSRMGGGSIEVSVPRFAVGIVIGRNGEMIK EVSVPRFAVGIVIGRNGEMIKKIQNDAGVR R F A G R N 1 1 0 0 0 0 0 2 0 2 0 0 0 1 0 0 0 0 0 2 0 0 9 0 930.56509 A0A024R8A7;Q96I24;Q6PJY1;B4DWL1 A0A024R8A7 263 271 hCG_31253;FUBP3;FUBP1 Far upstream element-binding protein 3 no no 2 0.0065179 67.032 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4014 245 4126 10564 16520 16520 1 FAVLHGEAPR KETIIAFAWEPNGSKFAVLHGEAPRISVSF PNGSKFAVLHGEAPRISVSFYHVKNNGKIE K F A P R I 2 1 0 0 0 0 1 1 1 0 1 0 0 1 1 0 0 0 0 1 0 0 10 0 1095.5825 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q59FS8 Q96G38 385 394 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 3 0.001258 60.102 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10165000 10165000 0 10165000 10165000 0 0 0 0 4015 241 4127 10565 16521 16521 1 FAYKDPEK KETYEALLARFPNLRFAYKDPEKNWNRNCV ARFPNLRFAYKDPEKNWNRNCVKGLVASLI R F A E K N 1 0 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 0 1 0 0 0 8 1 996.49165 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 508 515 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0055218 104.06 2 1.8547 1.576 2.3052 2 Median NaN NaN NaN 0 0 Median 1.8547 1.576 2.3052 2 0 Median 28680000 9540800 19140000 0 0 0 28680000 9540800 19140000 4016 69 4128 10566;10567 16522;16523 16523 2 FAYNDQGQVR WAPTGGCCPGASLHKFAYNDQGQVRLRAGL ASLHKFAYNDQGQVRLRAGLPIYECNSRCR K F A V R L 1 1 1 1 0 2 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 10 0 1196.5574 O43463;B4DMP6 O43463 203 212 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes no 2 1.3272E-06 111.74 2 2 1.3884 1.2811 18.974 4 Median 1.0165 1.0871 0.75812 2 0 Median 1.8434 1.5098 0.77647 2 0 Median 97563000 46225000 51338000 67791000 35607000 32185000 29771000 10618000 19153000 4017 1385 4129 10568;10569;10570;10571 16524;16525;16526;16527;16528;16529;16530 16526 7 FCADCIITALR DMLKNTMTTKECLHRFCADCIITALRSGNK CLHRFCADCIITALRSGNKECPTCRKKLVS R F C L R S 2 1 0 1 2 0 0 0 0 2 1 0 0 1 0 0 1 0 0 0 0 0 11 0 1338.6424 X6RFN3;Q99496 X6RFN3 71 81 RNF2 E3 ubiquitin-protein ligase RING2 yes no 2 0.0004546 77.192 2 2 1.3557 1.2477 15.727 4 Median 1.1026 1.1019 1.046 2 0 Median 1.7039 1.4424 3.9834 2 0 Median 43404000 20871000 22533000 29693000 15661000 14033000 13711000 5210700 8500000 4018 1992 4130 10572;10573;10574;10575 16531;16532;16533;16534;16535;16536;16537;16538 16531 8 FCDTCLQEFLSEGVFK KPMREPVQVSTCGHRFCDTCLQEFLSEGVF CDTCLQEFLSEGVFKCPEDQLPLDYAKIYP R F C F K C 0 0 0 1 2 1 2 1 0 0 2 1 0 3 0 1 1 0 0 1 0 0 16 0 1978.8805 A0A024QZ59;Q9BUZ4;A0A024QZ19;Q2KJU6;Q2KJU5;A0A0C4DFM9;B4DUU9;F6SA91;C9JJ10 A0A024QZ59 38 53 TRAF4 TNF receptor-associated factor 4 yes no 2 0.00013255 74.76 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6184700 0 6184700 6184700 0 6184700 0 0 0 4019 11 4131 10576;10577;10578 16539;16540;16541 16541 3 FCEYETAEQGLLNR MVHKEKGANKMHKCKFCEYETAEQGLLNRH KFCEYETAEQGLLNRHLLAVHSKNFPHICV K F C N R H 1 1 1 0 1 1 3 1 0 0 2 0 0 1 0 0 1 0 1 0 0 0 14 0 1728.7777 Q8WWU0;Q8WXB7;E9PEP7;A0A024RC04;B7ZKJ5;P17010;P08048 Q8WWU0 210 223 ZFX;ZFY Zinc finger X-chromosomal protein;Zinc finger Y-chromosomal protein yes no 2 9.0315E-07 103.22 2 2 1.1612 1.0208 1.6303 2 Median NaN NaN NaN 0 0 Median 1.1612 1.0208 1.6303 2 0 Median 4930100 2193000 2737100 0 0 0 4930100 2193000 2737100 4020 351 4132 10579;10580;10581;10582 16542;16543;16544;16545 16543 4 FCFTPHTEEGCLSER APRRQQEQQVPILEKFCFTPHTEEGCLSER FCFTPHTEEGCLSERAALQEELQLCKGLVQ K F C E R A 0 1 0 0 2 0 3 1 1 0 1 0 0 2 1 1 2 0 0 0 0 0 15 0 1868.7822 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1117 1131 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.0001936 53.403 1 1.3618 1.4276 NaN 1 Median 1.3618 1.4276 NaN 1 0 Median NaN NaN NaN 0 0 Median 12321000 4750100 7571300 12321000 4750100 7571300 0 0 0 4021 587 4133 10583 16546 16546 1 FCGTSFFTVGDDK TIQAHEGFVRGICTRFCGTSFFTVGDDKTV TRFCGTSFFTVGDDKTVKQWKMDGPGYGDE R F C D K T 0 0 0 2 1 0 0 2 0 0 0 1 0 3 0 1 2 0 0 1 0 0 13 0 1479.634 A0A087WT20;Q9NV06;B3KME9 A0A087WT20 271 283 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 3.4365E-14 136.48 2 2 1.0874 0.98517 12.806 4 Median 0.84478 0.88297 4.6292 2 0 Median 1.3583 1.0931 3.8429 2 0 Median 86957000 43261000 43696000 64372000 33165000 31207000 22585000 10096000 12489000 4022 402 4134 10584;10585;10586;10587 16547;16548;16549;16550;16551;16552;16553;16554 16550 8 FCIQEIEK EKAPAHHPAAISTAKFCIQEIEKSGGSKEA AAISTAKFCIQEIEKSGGSKEATTTLHMLT K F C E K S 0 0 0 0 1 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 8 0 1065.5165 B3KMR5;Q5JTH9 B3KMR5 287 294 RRP12 RRP12-like protein yes no 2 0.0099928 73.26 2 2 1.2011 1.0639 5.5244 4 Median 1.1261 1.1217 3.8156 2 0 Median 1.2806 1.0282 1.1543 2 0 Median 62239000 29366000 32873000 51576000 24529000 27047000 10664000 4837000 5826600 4023 907 4135 10588;10589;10590;10591 16555;16556;16557;16558;16559;16560 16555 6 FCIWTESAFR KLNILKLAPGGHVGRFCIWTESAFRKLDEL GHVGRFCIWTESAFRKLDELYGTWRKAASL R F C F R K 1 1 0 0 1 0 1 0 0 1 0 0 0 2 0 1 1 1 0 0 0 0 10 0 1315.6019 P36578;Q59GY2;B4DMJ6;H3BM89;B4DMJ2 P36578 249 258 RPL4 60S ribosomal protein L4 yes no 2 0.00022451 93.267 2 2 0.79572 0.79296 5.4385 4 Median 0.68392 0.77253 2.5176 2 0 Median 0.95923 0.83084 5.4257 2 0 Median 307420000 178470000 128960000 220050000 133450000 86597000 87378000 45017000 42362000 4024 1548 4136 10592;10593;10594;10595 16561;16562;16563;16564;16565;16566;16567 16563 7 FCMISATFCDSQLR SNPDLSAAASLALGKFCMISATFCDSQLRL KFCMISATFCDSQLRLLFTMLEKSPLPIVR K F C L R L 1 1 0 1 2 1 0 0 0 1 1 0 1 2 0 2 1 0 0 0 0 0 14 0 1734.7528 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1044 1057 NCAPD2 Condensin complex subunit 1 yes no 2 0.00012668 79.693 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3175600 0 3175600 3175600 0 3175600 0 0 0 4025 908 4137 10596;10597 16568;16569 16568 737 2 FCSDCIVTALR DMLKNTMTTKECLHRFCSDCIVTALRSGNK CLHRFCSDCIVTALRSGNKECPTCRKKLVS R F C L R S 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1340.6217 A0A024RCR9;Q06587;B4DVB5 A0A024RCR9 39 49 RING1 E3 ubiquitin-protein ligase RING1 yes no 2 0.0251 41.399 2 1.3146 1.1224 10.915 2 Median NaN NaN NaN 0 0 Median 1.3146 1.1224 10.915 2 0 Median 8575300 3656700 4918600 0 0 0 8575300 3656700 4918600 4026 369 4138 10598;10599 16570;16571 16571 2 FCSSSCITAYK SGQCHMLQIEGQSKKFCSSSCITAYKQKSA QSKKFCSSSCITAYKQKSAKITPCALCKSL K F C Y K Q 1 0 0 0 2 0 0 0 0 1 0 1 0 1 0 3 1 0 1 0 0 0 11 0 1322.5635 Q5VZL5;H7C1I7 Q5VZL5 512 522 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.011973 56.632 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3300800 0 3300800 3300800 0 3300800 0 0 0 4027 1835 4139 10600 16572 16572 1 FCTGLTQIETLFK ISMQKGGNMKEVFTRFCTGLTQIETLFKSK TRFCTGLTQIETLFKSKDYEFMWNPHLGYI R F C F K S 0 0 0 0 1 1 1 1 0 1 2 1 0 2 0 0 3 0 0 0 0 0 13 0 1556.7909 V9HWH2;V9HW77;A0A0S2Z471;P12277 V9HWH2 253 265 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 2.3429E-05 123.51 2 3.8048 3.8998 12.228 2 Median 3.8048 3.8998 12.228 2 0 Median NaN NaN NaN 0 0 Median 25551000 5785900 19765000 25551000 5785900 19765000 0 0 0 4028 557 4140 10601;10602 16573;16574;16575 16573 3 FCVTWNTNSR TMLRLRRDQKEALLRFCVTWNTNSRHCHEA EALLRFCVTWNTNSRHCHEAQAVLGVLLRR R F C S R H 0 1 2 0 1 0 0 0 0 0 0 0 0 1 0 1 2 1 0 1 0 0 10 0 1283.5717 Q12788;J3KNP2;A0JLS5 Q12788 717 726 TBL3 Transducin beta-like protein 3 yes no 2 0.017404 47.869 2 1.1876 1.002 5.6473 2 Median NaN NaN NaN 0 0 Median 1.1876 1.002 5.6473 2 0 Median 11564000 4798600 6765900 0 0 0 11564000 4798600 6765900 4029 1698 4141 10603;10604 16576;16577 16577 2 FDAGELITQR LPSITTEILKSVVARFDAGELITQRELVSR SVVARFDAGELITQRELVSRQVSDDLTERA R F D Q R E 1 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1148.5826 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;Q9BSE8 Q6PUJ7 134 143 HEL-S-54e;PHB;ZNF607 Prohibitin yes no 2 8.811E-12 140.11 2 2 1.8206 1.8244 13.696 4 Median 1.3895 1.6319 1.1332 2 0 Median 2.3993 2.0646 2.8622 2 0 Median 847700000 350990000 496710000 785090000 332640000 452460000 62609000 18356000 44253000 4030 730 4142 10605;10606;10607;10608 16578;16579;16580;16581;16582;16583;16584;16585;16586;16587;16588 16581 11 FDASFFGVHPK YGLPRRSGKLKDLSRFDASFFGVHPKQAHT DLSRFDASFFGVHPKQAHTMDPQLRLLLEV R F D P K Q 1 0 0 1 0 0 0 1 1 0 0 1 0 3 1 1 0 0 0 1 0 0 11 0 1250.6084 A0A0U1RQF0;P49327;A0A0U1RRG3 A0A0U1RQF0 60 70 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00038966 82.287 1 1 1.2228 1.1534 74.076 2 Median 1.85 1.9474 NaN 1 0 Median 0.80828 0.68311 NaN 1 0 Median 21776000 9520400 12256000 19778000 8481100 11297000 1997700 1039300 958420 4031 587 4143 10609;10610 16589;16590 16589 2 FDDAVVQSDMK PTNTVFDAKRLIGRRFDDAVVQSDMKHWPF IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV R F D M K H 1 0 0 3 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 11 0 1253.5598 E9PN89;A4D111;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;E9PNE6;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 V9HW22 78 88 HSPA8;LOC401308;HEL-S-72p Heat shock cognate 71 kDa protein no no 2 0.0034449 57.785 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8408600 8408600 0 8408600 8408600 0 0 0 0 4032 1467;1248 4144 10611 16591 16591 956 1 FDDDVVSR YVVYLNPKGDGKWCKFDDDVVSRCTKEEAI GDGKWCKFDDDVVSRCTKEEAIEHNYGGHD K F D S R C 0 1 0 3 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 951.42977 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q93009 480 487 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.015948 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13152000 13152000 0 13152000 13152000 0 0 0 0 4033 1954 4145 10612 16592 16592 1 FDDGAGGDNEVQR CLIFFDEIDAIGGARFDDGAGGDNEVQRTM ARFDDGAGGDNEVQRTMLELINQLDGFDPR R F D Q R T 1 1 1 3 0 1 1 3 0 0 0 0 0 1 0 0 0 0 0 1 0 0 13 0 1378.5749 A0A140VK70;P35998;Q75L23 A0A140VK70 285 297 PSMC2 26S protease regulatory subunit 7 yes no 2 2.758E-24 161.67 2 2 1.7298 1.6646 47.251 4 Median 2.3348 2.4897 1.5646 2 0 Median 1.2723 1.0992 3.3169 2 0 Median 73996000 24226000 49769000 68651000 21985000 46666000 5344700 2241000 3103700 4034 620 4146 10613;10614;10615;10616 16593;16594;16595;16596;16597;16598;16599;16600 16596 8 FDDLSGEYNPEVFDK RQVVPISKKVARDPRFDDLSGEYNPEVFDK FDDLSGEYNPEVFDKTYQFLNDIRAKEKEL R F D D K T 0 0 1 3 0 0 2 1 0 0 1 1 0 2 1 1 0 0 1 1 0 0 15 0 1773.7734 B2R9K5;Q96EU6 B2R9K5 122 136 RRP36 Ribosomal RNA processing protein 36 homolog yes no 2 0.007509 62.338 2 1 0.9803 0.76796 NaN 1 Median NaN NaN NaN 0 0 Median 0.9803 0.76796 NaN 1 0 Median 9367200 8047100 1320100 6167500 6167500 0 3199800 1879600 1320100 4035 867 4147 10617;10618;10619 16601;16602;16603 16602 3 FDDPGLMLMGFK RQIILEKEETEELKRFDDPGLMLMGFKPLV LKRFDDPGLMLMGFKPLVLLKKHHYLRPSL R F D F K P 0 0 0 2 0 0 0 2 0 0 2 1 2 2 1 0 0 0 0 0 0 0 12 0 1369.641 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 340 351 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.00049382 71.349 2 0.83177 0.91209 5.0154 2 Median 0.83177 0.91209 5.0154 2 0 Median NaN NaN NaN 0 0 Median 112290000 61318000 50968000 112290000 61318000 50968000 0 0 0 4036 82 4148 10620;10621 16604;16605;16606 16606 76;77 3 FDDPLLGPR MNRGIKDLSKVKLMRFDDPLLGPRRVPVLG KVKLMRFDDPLLGPRRVPVLGKEYTEKTPI R F D P R R 0 1 0 2 0 0 0 1 0 0 2 0 0 1 2 0 0 0 0 0 0 0 9 0 1028.5291 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 1072 1080 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.032931 52.937 1 1 1.1484 1.0758 60.52 2 Median 1.645 1.6504 NaN 1 0 Median 0.80173 0.70125 NaN 1 0 Median 18860000 8361200 10499000 17473000 7584700 9888000 1387000 776440 610520 4037 883 4149 10622;10623 16607;16608 16607 2 FDDVTSEDTR EKRTELGKLVGYTVRFDDVTSEDTRIKFLT GYTVRFDDVTSEDTRIKFLTDGMLLREAIS R F D T R I 0 1 0 3 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 10 0 1183.4993 B4DIS6;Q9H6R0;I3L1L6 B4DIS6 216 225 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 2.0735E-08 121.73 2 1 1.249 1.2329 12.894 3 Median 1.2327 1.301 7.6016 2 0 Median 1.249 1.062 NaN 1 0 Median 52017000 22336000 29682000 46699000 19978000 26720000 5318800 2357100 2961700 4038 983 4150 10624;10625;10626 16609;16610;16611;16612;16613 16612 5 FDEFDEAIDEAIEDDIK LERRSTRTRKCISYRFDEFDEAIDEAIEDD EFDEAIDEAIEDDIKEADGGGVGRGKDIST R F D I K E 2 0 0 5 0 0 4 0 0 3 0 1 0 2 0 0 0 0 0 0 0 0 17 0 2012.8739 Q96T23;H0YDG9 Q96T23 1023 1039 RSF1 Remodeling and spacing factor 1 yes no 2 1.1156E-12 118.37 2 0.43511 0.44271 7.1241 2 Median 0.43511 0.44271 7.1241 2 0 Median NaN NaN NaN 0 0 Median 44217000 29255000 14963000 44217000 29255000 14963000 0 0 0 4039 1991 4151 10627;10628 16614;16615;16616;16617;16618;16619 16619 6 FDEGEDGEGDFLVVGSIR EADPEEATAARVIDRFDEGEDGEGDFLVVG GEDGEGDFLVVGSIRKLASASLLDTDKRYC R F D I R K 0 1 0 3 0 0 3 4 0 1 1 0 0 2 0 1 0 0 0 2 0 0 18 0 1939.88 Q9NY61 Q9NY61 40 57 AATF Protein AATF yes yes 2 0.0025999 51.211 2 2 1.924 1.6931 NaN 1 Median NaN NaN NaN 0 0 Median 1.924 1.6931 NaN 1 0 Median 8949100 4571100 4378000 3518600 3518600 0 5430500 1052500 4378000 4040 2080 4152 10629;10630;10631;10632 16620;16621;16622;16623 16620 4 FDEHDGPVR VIQLWDYRMCTLIDKFDEHDGPVRGIDFHK CTLIDKFDEHDGPVRGIDFHKQQPLFVSGG K F D V R G 0 1 0 2 0 0 1 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 9 0 1070.4781 P53621 P53621 47 55 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2;3 0.0062552 55.37 3 1.2321 1.2253 14.981 3 Median 1.2321 1.2253 14.981 3 0 Median NaN NaN NaN 0 0 Median 27349000 12468000 14882000 27349000 12468000 14882000 0 0 0 4041 1607 4153 10633;10634;10635 16624;16625;16626 16626 3 FDEISFVNFAR ERGFIYVHKPPVHIRFDEISFVNFARGTTT VHIRFDEISFVNFARGTTTTRSFDFEIETK R F D A R G 1 1 1 1 0 0 1 0 0 1 0 0 0 3 0 1 0 0 0 1 0 0 11 0 1343.651 A0A024R4Z6;Q08945 A0A024R4Z6 371 381 SSRP1 FACT complex subunit SSRP1 yes no 2 4.5423E-08 118.18 4 2 0.81716 0.83124 1.1502 4 Linear 0.70895 0.83056 0.3923 2 0 Median 0.93941 0.81532 0.62059 2 0 Median 804630000 465890000 338740000 640240000 382180000 258070000 164390000 83718000 80672000 4042 167 4154 10636;10637;10638;10639;10640;10641 16627;16628;16629;16630;16631;16632;16633;16634;16635;16636;16637;16638;16639;16640;16641;16642 16641 16 FDENYAFLHR NFVYNEGQQFMPWYKFDENYAFLHRTLKEI MPWYKFDENYAFLHRTLKEILRYLMDPDTF K F D H R T 1 1 1 1 0 0 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 0 10 0 1310.6044 W0HJ78;B0QYD3;Q9UH17 W0HJ78 174 183 APOBEC3B DNA dC->dU-editing enzyme APOBEC-3B yes no 3 0.017646 28.204 2 0.49704 0.5093 2.4923 2 Median 0.49704 0.5093 2.4923 2 0 Median NaN NaN NaN 0 0 Median 28169000 18565000 9604400 28169000 18565000 9604400 0 0 0 4043 807 4155 10642;10643 16643;16644 16643 2 FDETEQALANER KIIKKSSGFSGKGFKFDETEQALANERKKL GFKFDETEQALANERKKLQKAALGLQDSDD K F D E R K 2 1 1 1 0 1 3 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 12 0 1421.6423 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 780 791 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 8.9107E-18 141.1 2 1 1.7222 1.7618 39.129 3 Median 1.7658 1.8478 6.7411 2 0 Median 1.0804 0.94299 NaN 1 0 Median 60238000 28750000 31488000 58359000 27853000 30506000 1879400 897010 982410 4044 511 4156 10644;10645;10646 16645;16646;16647;16648;16649 16646 5 FDEVLIR YVRCIKPNDAKQPGRFDEVLIRHQVKYLGL NDAKQPGRFDEVLIRHQVKYLGLLENLRVR R F D I R H 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 7 0 890.48617 F5H6E2;B7Z3E5;O00159;B7Z9C0;A1L180;D3DTH7 F5H6E2 613 619 MYO1C Unconventional myosin-Ic no no 2 0.011218 108.98 2 1 1.3656 1.5715 10.151 3 Median 1.2946 1.4502 12.77 2 0 Median 1.8213 1.5715 NaN 1 0 Median 114120000 48702000 65422000 111480000 47825000 63656000 2643700 877590 1766100 4045 1088;1189 4157 10647;10648;10649 16650;16651;16652;16653 16650 4 FDFPVSYLPGPVK PMMKLVYKLQAEDYKFDFPVSYLPGPVKAS YKFDFPVSYLPGPVKASIQECILPDSPLYH K F D V K A 0 0 0 1 0 0 0 1 0 0 1 1 0 2 3 1 0 0 1 2 0 0 13 0 1464.7653 H7BXF4;B1PBA3;Q9NXE4;C9J647;B4DTS0;B4E0A6;B4E3P9;B4DEV6 H7BXF4 146 158 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 2 0.0032736 50.353 1 1.0588 1.0739 NaN 1 Median 1.0588 1.0739 NaN 1 0 Median NaN NaN NaN 0 0 Median 5269100 2907300 2361800 5269100 2907300 2361800 0 0 0 4046 822 4158 10650 16654 16654 1 FDHVPLATPNGDVLIR IPGAGEIIIADNIIKFDHVPLATPNGDVLI DHVPLATPNGDVLIRDLNFEVRSGANVLIC K F D I R D 1 1 1 2 0 0 0 1 1 1 2 0 0 1 2 0 1 0 0 2 0 0 16 0 1762.9366 B4DL07;P28288;B4DZ22 B4DL07 466 481 ABCD3 ATP-binding cassette sub-family D member 3 yes no 3 0.02542 20.737 1 1.9581 1.9545 NaN 1 Median 1.9581 1.9545 NaN 1 0 Median NaN NaN NaN 0 0 Median 8990400 3253700 5736700 8990400 3253700 5736700 0 0 0 4047 994 4159 10651 16655 16655 1 FDLALAATEAR HRYFSYLSKVGDKMRFDLALAATEARQCSD DKMRFDLALAATEARQCSDLLSQAQYHVAR R F D A R Q 4 1 0 1 0 0 1 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1176.6139 A8K6X9;Q6PD62 A8K6X9 805 815 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.00026131 90.149 2 1.4706 1.5393 3.4846 2 Median 1.4706 1.5393 3.4846 2 0 Median NaN NaN NaN 0 0 Median 45414000 18583000 26831000 45414000 18583000 26831000 0 0 0 4048 765 4160 10652;10653 16656;16657 16657 2 FDLIGLEGR RATDVHPLQRIDMGRFDLIGLEGRVSRYEA RIDMGRFDLIGLEGRVSRYEADTFLPRHRL R F D G R V 0 1 0 1 0 0 1 2 0 1 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1018.5447 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4;G1UI29;A0A087X0E3;B3KN63 A0A0A0MS59 749 757 SRCAP Helicase SRCAP yes no 2 0.0068692 66.692 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14026000 14026000 0 14026000 14026000 0 0 0 0 4049 476 4161 10654;10655;10656 16658;16659;16660 16659 3 FDLLEELVAK KQAFAHVSKLLSQCKFDLLEELVAKEVLHA LSQCKFDLLEELVAKEVLHALKEKVTSLPD K F D A K E 1 0 0 1 0 0 2 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 10 0 1175.6438 H7C0V0;A0A024R3U8;Q8WWC4 H7C0V0 157 166 C2orf47;FLJ22555 Uncharacterized protein C2orf47, mitochondrial yes no 2 0.00126 74.464 2 1.6726 1.818 17.691 2 Median 1.6726 1.818 17.691 2 0 Median NaN NaN NaN 0 0 Median 6532800 3084700 3448100 6532800 3084700 3448100 0 0 0 4050 140 4162 10657;10658 16661;16662 16662 2 FDLLWLIQDRPDR SLEQNIQLPAALLSRFDLLWLIQDRPDRDN SRFDLLWLIQDRPDRDNDLRLAQHITYVHQ R F D D R D 0 2 0 3 0 1 0 0 0 1 3 0 0 1 1 0 0 1 0 0 0 0 13 1 1685.8889 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;Q9H4N9 B3KUD7 408 420 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 3 0.0048342 41.644 2 0.97627 1.0282 21.096 2 Median 0.97627 1.0282 21.096 2 0 Median NaN NaN NaN 0 0 Median 10913000 6499200 4413400 10913000 6499200 4413400 0 0 0 4051 560 4163 10659;10660 16663;16664;16665;16666 16664 4 FDLMYAK NTTAIAEAWARLDHKFDLMYAKRAFVHWYV AWARLDHKFDLMYAKRAFVHWYVGEGMEEG K F D A K R 1 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 7 0 886.42588 A6NHL2;B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;B4DN58;Q15670;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 360 366 TUBAL3;TUBA1B;TUBA1C;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 1;2 0.0090521 65.672 3 2.1722 2.5349 1.9342 3 Median 2.1722 2.5349 1.9342 3 0 Median NaN NaN NaN 0 0 Median 532240000 176930000 355310000 532240000 176930000 355310000 0 0 0 4052 922;1257;1659;1869;682 4164 10661;10662;10663 16667;16668;16669;16670;16671 16669 529 5 FDLQNPSR LGAAYKYKNEQGWRRFDLQNPSRMDRNVEM NEQGWRRFDLQNPSRMDRNVEMFMNIEKTL R F D S R M 0 1 1 1 0 1 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 8 0 975.47739 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 137 144 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 0.0089411 78.324 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4053 1798 4165 10664 16672 16672 1 FDNIGMNAMANK AEEFGHLLDENMGSKFDNIGMNAMANKDNA GSKFDNIGMNAMANKDNASLKQLRWEAERD K F D N K D 2 0 3 1 0 0 0 1 0 1 0 1 2 1 0 0 0 0 0 0 0 0 12 0 1324.5904 Q03701 Q03701 994 1005 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.00028033 86.898 2 1.7667 1.8463 15.915 2 Median 1.7667 1.8463 15.915 2 0 Median NaN NaN NaN 0 0 Median 36378000 14980000 21398000 36378000 14980000 21398000 0 0 0 4054 1683 4166 10665;10666 16673;16674;16675 16674 1500;1501 3 FDNLYCCR CVPAMNVNDSVTKQKFDNLYCCRESILDGL DSVTKQKFDNLYCCRESILDGLKRTTDVMF K F D C R E 0 1 1 1 2 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1146.4586 Q6ZMM9;Q2NKW8;H0Y8B3;Q6ZNS6;A0A024R0A8;V5YQL4;O43865;Q96HN2 Q6ZMM9 151 158 AHCYL1;AHCYL2;FGFR2-AHCYL1 Adenosylhomocysteinase;Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 2 0.0052919 85.064 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3670900 0 3670900 3670900 0 3670900 0 0 0 4055 40 4167 10667;10668 16676;16677 16676 2 FDPNEIK ______________________________ ______________________________ K F D I K V 0 0 1 1 0 0 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 7 0 861.42323 P30050;Q59FI9;D3DS95;Q76P68 P30050 5 11 RPL12;hCG_21173;cICK0721Q.2 60S ribosomal protein L12 yes no 2 0.027367 73.637 2 0.82343 0.91811 4.527 2 Median 0.82343 0.91811 4.527 2 0 Median NaN NaN NaN 0 0 Median 162240000 86099000 76138000 162240000 86099000 76138000 0 0 0 4056 1532 4168 10669;10670 16678;16679 16679 2 FDQLFDDESDPFEVLK PGHLQEGFGCVVTNRFDQLFDDESDPFEVL DQLFDDESDPFEVLKAAENKKKEAGGGGVG R F D L K A 0 0 0 4 0 1 2 0 0 0 2 1 0 3 1 1 0 0 0 1 0 0 16 0 1942.8836 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 17 32 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 2 2.6748E-06 91.62 2 1.9934 2.1606 3.9285 2 Median 1.9934 2.1606 3.9285 2 0 Median NaN NaN NaN 0 0 Median 79701000 26712000 52990000 79701000 26712000 52990000 0 0 0 4057 1832 4169 10671;10672 16680;16681;16682;16683 16681 4 FDQLLAEEK HQRQSACNLEKKQKKFDQLLAEEKTISAKY EKKQKKFDQLLAEEKTISAKYAEERDRAEA K F D E K T 1 0 0 1 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1091.5499 A0A024R1N1;P35579;A0A0U4BW16;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;Q7Z7R0;O14729;O14794;Q68D89;A0A0C4DFM8;B4E177;A1L2Z2;P35580;Q7Z406 A0A024R1N1 1446 1454 MYH9;MYH11;DKFZp686D10126;MYH14;MYH10 Myosin-9;Myosin-11;Myosin-10;Myosin-14 no no 2 0.0014132 85.731 1 1.6001 1.6736 NaN 1 Median 1.6001 1.6736 NaN 1 0 Median NaN NaN NaN 0 0 Median 11969000 4728600 7239900 11969000 4728600 7239900 0 0 0 4058 81;1544;1875 4170 10673 16684;16685 16684 2 FDSEYER RDDSFFGETSHNYHKFDSEYERMGRGPGPL ETSHNYHKFDSEYERMGRGPGPLQERSLFE K F D E R M 0 1 0 1 0 0 2 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 7 0 944.38758 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991;H0Y8T4 D6REM6 246 252 MATR3;DKFZp686K23100 Matrin-3 yes no 2 0.020094 94.407 1 1.3934 1.4366 NaN 1 Median 1.3934 1.4366 NaN 1 0 Median NaN NaN NaN 0 0 Median 36848000 15820000 21027000 36848000 15820000 21027000 0 0 0 4059 542 4171 10674 16686;16687 16686 2 FDSNEEDSASVFSPSFGLK SFPSYSQKSEDDSAKFDSNEEDSASVFSPS EEDSASVFSPSFGLKQTDKVPSKTVAAKKG K F D L K Q 1 0 1 2 0 0 2 1 0 0 1 1 0 3 1 5 0 0 0 1 0 0 19 0 2061.9167 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1436 1454 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.00057169 38.511 2 1.0549 0.84843 4.2624 2 Median NaN NaN NaN 0 0 Median 1.0549 0.84843 4.2624 2 0 Median 9969200 5055100 4914100 0 0 0 9969200 5055100 4914100 4060 1679 4172 10675;10676 16688;16689 16689 2 FDTGNLCMVTGGANLGR IQIDLETGKITDFIKFDTGNLCMVTGGANL TGNLCMVTGGANLGRIGVITNRERHPGSFD K F D G R I 1 1 2 1 1 0 0 4 0 0 2 0 1 1 0 0 2 0 0 1 0 0 17 0 1781.8189 B2R491;P62701;Q96IR1;Q53HV1 B2R491 175 191 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 2.2723E-18 134.61 2 6 1.027 0.87843 41.313 8 Median 1.4247 1.6283 0.22531 2 0 Median 0.95604 0.8076 24.636 6 0 Median 436180000 204950000 231230000 271160000 116230000 154930000 165020000 88721000 76302000 4061 824 4173;4174 10677;10678;10679;10680;10681;10682;10683;10684 16690;16691;16692;16693;16694;16695;16696;16697;16698;16699;16700;16701;16702;16703;16704;16705;16706 16702 652 17 FDTIYQILLK STRKIKEEEKRVNSKFDTIYQILLKKKSEI RVNSKFDTIYQILLKKKSEIQTLKEEIEQS K F D L K K 0 0 0 1 0 1 0 0 0 2 2 1 0 1 0 0 1 0 1 0 0 0 10 0 1252.7067 Q14258;Q59GW5;D3DTY9 Q14258 274 283 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 2 1.1323E-07 109.21 1 2 1.3015 1.0802 0.95633 2 Median NaN NaN NaN 0 0 Median 1.3015 1.0802 0.95633 2 0 Median 12368000 1813500 10555000 8498000 0 8498000 3870200 1813500 2056700 4062 1731;1802 4175 10685;10686;10687 16707;16708;16709;16710;16711 16707 5 FDTPFLPK SLKKQKLRAESDFVKFDTPFLPKPLFFRRA AESDFVKFDTPFLPKPLFFRRAKSSTATHP K F D P K P 0 0 0 1 0 0 0 0 0 0 1 1 0 2 2 0 1 0 0 0 0 0 8 0 963.50657 Q14684 Q14684 645 652 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.0080733 79.469 2 2 1.6335 1.2777 11.504 3 Median 1.0127 1.1315 NaN 1 0 Median 1.682 1.3489 7.6618 2 0 Median 111460000 55274000 56189000 89740000 47749000 41991000 21724000 7525800 14198000 4063 1740 4176 10688;10689;10690;10691 16712;16713;16714;16715;16716;16717;16718 16712 7 FDTQLFHTIGVEFLNK GVGKSSLMNRYVTNKFDTQLFHTIGVEFLN DTQLFHTIGVEFLNKDLEVDGHFVTMQIWD K F D N K D 0 0 1 1 0 1 1 1 1 1 2 1 0 3 0 0 2 0 0 1 0 0 16 0 1907.9781 A0A024RBV5;P51151 A0A024RBV5 32 47 RAB9A Ras-related protein Rab-9A yes no 3 6.9572E-05 58.671 2 2.1263 2.2018 NaN 1 Median 2.1263 2.2018 NaN 1 0 Median NaN NaN NaN 0 0 Median 18683000 6016200 12667000 18683000 6016200 12667000 0 0 0 4064 348 4177 10692;10693 16719;16720;16721 16720 3 FDVGPK HEYRNQTFEGRQRERFDVGPKEKPLEEPDA TFEGRQRERFDVGPKEKPLEEPDAQGRASE R F D P K E 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 6 0 661.34353 Q9BTC0 Q9BTC0 2091 2096 DIDO1 Death-inducer obliterator 1 yes yes 2 0.051452 68.033 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6640500 6640500 0 6640500 6640500 0 0 0 0 4065 2002 4178 10694 16722 16722 1 FDVPGDENAEMDAR EALAKTEVSLTLTNKFDVPGDENAEMDART KFDVPGDENAEMDARTILLNTKRLIVDVIR K F D A R T 2 1 1 3 0 0 2 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 14 0 1564.6464 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0 A4QPB0 1369 1382 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0029922 54.471 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4066 352 4179 10695 16723 16723 259 1 FDVQWIFVK GTSAGVWSQDKWKGKFDVQWIFVKDVPNNQ DKWKGKFDVQWIFVKDVPNNQLRHIRLENN K F D V K D 0 0 0 1 0 1 0 0 0 1 0 1 0 2 0 0 0 1 0 2 0 0 9 0 1180.6281 B4DT65;B3KTL8;Q9BYJ9 B4DT65 424 432 YTHDF1 YTH domain-containing family protein 1 yes no 2 0.010186 63.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4067 944 4180 10696 16724 16724 1 FDYAFDDSAPNEMVYR QKVDLTRYLENQTFRFDYAFDDSAPNEMVY DYAFDDSAPNEMVYRFTARPLVETIFERGM R F D Y R F 2 1 1 3 0 0 1 0 0 0 0 0 1 2 1 1 0 0 2 1 0 0 16 0 1938.8094 B0AZS5;O00139;B4DM85;D6R9M0 B0AZS5 230 245 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 7.4776E-05 70.089 2 0.84459 0.84963 NaN 1 Median 0.84459 0.84963 NaN 1 0 Median NaN NaN NaN 0 0 Median 17380000 11739000 5641500 17380000 11739000 5641500 0 0 0 4068 804 4181 10697;10698 16725;16726 16725 645 2 FEAHPNDLYVEGLPENIPFR EALGSTEAKAVPYQKFEAHPNDLYVEGLPE NDLYVEGLPENIPFRSPSWYGIPRLEKIIQ K F E F R S 1 1 2 1 0 0 3 1 1 1 2 0 0 2 3 0 0 0 1 1 0 0 20 0 2356.1488 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 454 473 GTF2I General transcription factor II-I yes no 3 5.2496E-07 64.723 2 2 0.97724 0.95681 7.3243 4 Median 0.92622 0.97239 1.1605 2 0 Median 1.069 0.89038 9.0535 2 0 Median 65343000 32682000 32662000 46545000 23777000 22768000 18798000 8904900 9893400 4069 789 4182 10699;10700;10701;10702 16727;16728;16729;16730;16731;16732;16733 16728 7 FEAPLFNAR VEEADVVLLVGTNPRFEAPLFNARIRKSWL VGTNPRFEAPLFNARIRKSWLHNDLKVALI R F E A R I 2 1 1 0 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 9 0 1063.5451 B4DJ81;E5KRK5;P28331 B4DJ81 293 301 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.0022292 75.109 2 1.5869 1.5913 13.889 2 Median 1.5869 1.5913 13.889 2 0 Median NaN NaN NaN 0 0 Median 22375000 9381300 12993000 22375000 9381300 12993000 0 0 0 4070 986 4183 10703;10704 16734;16735 16735 2 FECICGELDQIDR PPSNTMSPFNTSDYRFECICGELDQIDRKP YRFECICGELDQIDRKPRVQCLKCHLWQHA R F E D R K 0 1 0 2 2 1 2 1 0 2 1 0 0 1 0 0 0 0 0 0 0 0 13 0 1653.7127 A0A0D9SFM0;Q149N8;K4DI94 A0A0D9SFM0 659 671 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 0.013183 38.58 1 1.609 1.3994 NaN 1 Median NaN NaN NaN 0 0 Median 1.609 1.3994 NaN 1 0 Median 1549500 535320 1014200 0 0 0 1549500 535320 1014200 4071 527 4184 10705 16736 16736 1 FEDCTSENTLIK EMGGNLGEEVGYAIRFEDCTSENTLIKYMT AIRFEDCTSENTLIKYMTDGILLRESLREA R F E I K Y 0 0 1 1 1 0 2 0 0 1 1 1 0 1 0 1 2 0 0 0 0 0 12 0 1455.6552 A8K6G9;Q92620;B4DM30;B4DET0 A8K6G9 615 626 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.023015 37.556 1 0.7115 0.71177 NaN 1 Median 0.7115 0.71177 NaN 1 0 Median NaN NaN NaN 0 0 Median 15458000 9148800 6309700 15458000 9148800 6309700 0 0 0 4072 760 4185 10706 16737 16737 1 FEDEDSDDVPRK SVKRKKLPVDSVFNKFEDEDSDDVPRKRKL FNKFEDEDSDDVPRKRKLVPLDYGEDDKNA K F E R K R 0 1 0 4 0 0 2 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 12 1 1450.6212 P49756 P49756 698 709 RBM25 RNA-binding protein 25 yes yes 2;3 3.6637E-05 102.52 3 1.2676 1.4204 8.9241 3 Median 1.2676 1.4204 8.9241 3 0 Median NaN NaN NaN 0 0 Median 37274000 14652000 22623000 37274000 14652000 22623000 0 0 0 4073 1587 4186 10707;10708;10709 16738;16739;16740;16741 16741 4 FEDEELQQILDDIQTK TAEESKALIPSLEGRFEDEELQQILDDIQT EDEELQQILDDIQTKRSFQY__________ R F E T K R 0 0 0 3 0 3 3 0 0 2 2 1 0 1 0 0 1 0 0 0 0 0 16 0 1962.9422 Q587J0;E9PB93;E9PHV4;A0A024RAJ4;O15514 Q587J0 37 52 POLR2D DNA-directed RNA polymerase II subunit RPB4 yes no 2 0.0055703 51.286 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4074 306 4187 10710 16742 16742 1 FEDENFILK TRHNGTGGKSIYGEKFEDENFILKHTGPGI SIYGEKFEDENFILKHTGPGILSMANAGPN K F E L K H 0 0 1 1 0 0 2 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 9 0 1153.5655 V9HWF5;A8K486;P62937;B2RE56;F8WE65;C9J5S7;Q71V99 V9HWF5 83 91 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 2 0.00018573 107.01 1 1 2.3273 2.2119 92.826 2 Median 3.8152 4.2641 NaN 1 0 Median 1.4197 1.1474 NaN 1 0 Median 102740000 20877000 81860000 98401000 19001000 79400000 4336400 1876000 2460400 4075 731 4188 10711;10712 16743;16744;16745;16746 16744 4 FEDQPEGIDLEVVTESTGK VITEGVKPTLSELEKFEDQPEGIDLEVVTE PEGIDLEVVTESTGKEREHNFQPGDNVEVC K F E G K E 0 0 0 2 0 1 4 2 0 1 1 1 0 1 1 1 2 0 0 2 0 0 19 0 2091.9848 B4E0Q4;B4DZJ7;O00267;B4DJK4 B4E0Q4 255 273 SUPT5H Transcription elongation factor SPT5 yes no 2 0.0017361 53.754 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3675600 0 3675600 3675600 0 3675600 0 0 0 4076 1056 4189 10713;10714 16747;16748 16747 2 FEDSPSYVK ELLTESSKATNVCTRFEDSPSYVKWGKLRD TNVCTRFEDSPSYVKWGKLRDYQVRGLNWL R F E V K W 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 2 0 0 1 1 0 0 9 0 1070.492 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 168 176 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 8.1393E-05 101.64 1 2 5.267 4.2921 NaN 1 Median NaN NaN NaN 0 0 Median 5.267 4.2921 NaN 1 0 Median 144300000 5293000 139000000 112480000 0 112480000 31820000 5293000 26527000 4077 1391 4190 10715;10716;10717 16749;16750;16751;16752 16749 4 FEEAPDYMYLR PAEFAMYLNYCRGLRFEEAPDYMYLRQLFR RGLRFEEAPDYMYLRQLFRILFRTLNHQYD R F E L R Q 1 1 0 1 0 0 2 0 0 0 1 0 1 1 1 0 0 0 2 0 0 0 11 0 1432.6333 V9HW00;P48729;B4E1D9;D6REM4;H0Y9X2;U3KQK7;B4DFH4;E7ETM0;B4DER9;U3KPX3;U3KQ83 V9HW00 268 278 HEL-S-77p;CSNK1A1 Casein kinase I isoform alpha yes no 2 0.00083581 65.305 2 1.4756 1.5092 16.945 2 Median 1.4756 1.5092 16.945 2 0 Median NaN NaN NaN 0 0 Median 22833000 9693400 13140000 22833000 9693400 13140000 0 0 0 4078 1577 4191 10718;10719 16753;16754 16754 1355 2 FEEEELQR MDLVGLGLHPLFSSRFEEEELQRLRLVDSI HPLFSSRFEEEELQRLRLVDSIKNYRSRAT R F E Q R L 0 1 0 0 0 1 4 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1078.4931 Q8TDD1;H0YHH7 Q8TDD1 552 559 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.0010963 112.17 2 1 1.0407 0.9956 20.343 2 Median 0.77605 0.86221 NaN 1 0 Median 1.3957 1.1496 NaN 1 0 Median 99673000 57632000 42041000 87949000 52595000 35354000 11725000 5037300 6687300 4079 1933 4192 10720;10721;10722 16755;16756;16757;16758 16756 4 FEEESKEPVADEEEEDSDDDVEPITEFR SDCLGEHLYVMVNAKFEEESKEPVADEEEE EEDSDDDVEPITEFRFVPSDKSALEAMFTA K F E F R F 1 1 0 5 0 0 10 0 0 1 0 1 0 2 2 2 1 0 0 2 0 0 28 1 3313.3794 E9PJF4;P54105 E9PJF4 86 113 CLNS1A Methylosome subunit pICln yes no 3 5.3808E-06 45.511 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10078000 0 10078000 10078000 0 10078000 0 0 0 4080 1241 4193 10723 16759;16760 16759 2 FEEEVPR LYGFLCPSYELPDTKFEEEVPRIFKDLGYP SYELPDTKFEEEVPRIFKDLGYPFALSKSS K F E P R I 0 1 0 0 0 0 3 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 7 0 904.42905 A8K031;O14777;Q05DQ6;V9GYM9 A8K031 147 153 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.014972 86.866 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4081 696 4194 10724;10725 16761;16762 16762 2 FEELCSDLFR LFEGIDFYTSITRARFEELCSDLFRSTLEP ITRARFEELCSDLFRSTLEPVEKALRDAKL R F E F R S 0 1 0 1 1 0 2 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 10 0 1314.5914 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5;P48741 A8K5I0 302 311 HEL-S-103;HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2 0.00084902 80.239 2 1 0.72048 0.73173 10.92 3 Median 0.71805 0.72566 1.1768 2 0 Median 0.97225 0.87627 NaN 1 0 Median 50508000 30380000 20128000 48454000 29391000 19063000 2053600 988320 1065300 4082 533;845 4195 10726;10727;10728 16763;16764;16765;16766 16763 4 FEELNADLFR LYEGIDFYTSITRARFEELNADLFRGTLDP ITRARFEELNADLFRGTLDPVEKALRDAKL R F E F R G 1 1 1 1 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 10 0 1252.6088 E9PN89;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;A0A024R6B5;P54652;B3KUS2 V9HW22 302 311 HSPA8;HEL-S-72p;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2 5.3483E-13 149.94 3 2 1.3433 1.3007 19.234 4 Median 1.3433 1.5331 2.7086 2 0 Median 1.3486 1.1014 2.9886 2 0 Median 256650000 113080000 143570000 231390000 101990000 129400000 25262000 11096000 14166000 4083 1467;1248 4196 10729;10730;10731;10732;10733 16767;16768;16769;16770;16771;16772;16773;16774;16775;16776 16771 10 FEEPDSASVK FLKKQEDFEQKYNFRFEEPDSASVKTYPRS KYNFRFEEPDSASVKTYPRSIASSVRRKDE R F E V K T 1 0 0 1 0 0 2 0 0 0 0 1 0 1 1 2 0 0 0 1 0 0 10 0 1107.5084 Q8N9T8;A0A024R7C4;B4DUT2;B4DUY9;B7ZLF4 Q8N9T8 302 311 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.0016591 72.643 2 2 1.4932 1.1809 26.399 3 Median 0.76033 0.77468 NaN 1 0 Median 1.5139 1.2196 4.5604 2 0 Median 41086000 20033000 21054000 30820000 16201000 14619000 10266000 3831400 6434400 4084 1916 4197 10734;10735;10736;10737 16777;16778;16779;16780;16781 16779 5 FEEQGDFESEK TPDIKQWRLIRHTVKFEEQGDFESEKLWQR HTVKFEEQGDFESEKLWQRVTRAINAKDQT K F E E K L 0 0 0 1 0 1 4 1 0 0 0 1 0 2 0 1 0 0 0 0 0 0 11 0 1343.5517 F8VUA7;F8VQX7;Q641R2;A0A024RBB8;Q5HYM3;Q9BZF1;Q96E43 F8VUA7 650 660 OSBPL8;DKFZp686C0249 Oxysterol-binding protein;Oxysterol-binding protein-related protein 8 yes no 2 2.6072E-05 89.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4085 333 4198 10738 16782 16782 1 FEEYGPVIECDIVK GNISPACTNKELRAKFEEYGPVIECDIVKD KFEEYGPVIECDIVKDYAFVHMERAEDAVE K F E V K D 0 0 0 1 1 0 3 1 0 2 0 1 0 1 1 0 0 0 1 2 0 0 14 0 1696.8018 A8K9U0;Q9BWF3;E9PB51;Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5 A8K9U0 98 111 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.003354 47.288 1 2 1.1647 1.0508 18.799 2 Median 1.1892 1.2002 NaN 1 0 Median 1.1406 0.92004 NaN 1 0 Median 11491000 4485300 7005800 7027700 3114700 3913000 4463400 1370600 3092800 4086 788 4199 10739;10740;10741 16783;16784;16785;16786 16783 4 FEGAIYR ISALEEAKKGLAAIKFEGAIYRKDIGFRAI KKGLAAIKFEGAIYRKDIGFRAIAFLQQPR K F E Y R K 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 7 0 854.42865 Q3B7A7;Q59HH3;P22102;Q15374 Q3B7A7 412 418 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.027056 86.512 1 2.2591 2.3503 NaN 1 Median 2.2591 2.3503 NaN 1 0 Median NaN NaN NaN 0 0 Median 38152000 11511000 26641000 38152000 11511000 26641000 0 0 0 4087 1507 4200 10742 16787 16787 1 FEGAVIR SFIKGMFNSALEVAKFEGAVIRTVSGIRGQ NSALEVAKFEGAVIRTVSGIRGQIKKALRA K F E I R T 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 790.43374 Q14692 Q14692 1056 1062 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.024839 89.673 2 0.90925 1.0241 8.7533 2 Median 0.90925 1.0241 8.7533 2 0 Median NaN NaN NaN 0 0 Median 217420000 110640000 106780000 217420000 110640000 106780000 0 0 0 4088 1742 4201 10743;10744 16788;16789;16790;16791 16788 4 FEIVYNLLSLR LVDLTAVDVPTRQNRFEIVYNLLSLRFNSR RQNRFEIVYNLLSLRFNSRIRVKTYTDELT R F E L R F 0 1 1 0 0 0 1 0 0 1 3 0 0 1 0 1 0 0 1 1 0 0 11 0 1365.7656 Q9UF24;O75489;Q53FM7 Q9UF24 52 62 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 2 0.001099 70.1 2 1.6739 1.8065 20.029 2 Median 1.6739 1.8065 20.029 2 0 Median NaN NaN NaN 0 0 Median 5258300 2457700 2800600 5258300 2457700 2800600 0 0 0 4089 1406 4202 10745;10746 16792;16793;16794;16795;16796;16797 16795 6 FELDEDVK LAIGVEGGFDLSEEKFELDEDVKIVILPDY FDLSEEKFELDEDVKIVILPDYLEIARDGL K F E V K I 0 0 0 2 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 993.46549 A0A140VJZ1;P45974;F5H571 A0A140VJZ1 114 121 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.0065427 85.064 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29265000 0 29265000 29265000 0 29265000 0 0 0 4090 613 4203 10747;10748 16798;16799;16800 16798 3 FELLTNFPR ALVKHVQSKGYPNERFELLTNFPRRKLSHL GYPNERFELLTNFPRRKLSHLDYDITLQEA R F E P R R 0 1 1 0 0 0 1 0 0 0 2 0 0 2 1 0 1 0 0 0 0 0 9 0 1135.6026 O94888;C9JAT7;B4E126 O94888 452 460 UBXN7 UBX domain-containing protein 7 yes no 2 0.041466 41.448 1 0.70537 0.6051 NaN 1 Median NaN NaN NaN 0 0 Median 0.70537 0.6051 NaN 1 0 Median 1070300 649400 420920 0 0 0 1070300 649400 420920 4091 1417 4204 10749 16801 16801 1 FELQHGTEEQQEEVR KIDSDLGDAWAFFYKFELQHGTEEQQEEVR FELQHGTEEQQEEVRKRCESAEPRHGELWC K F E V R K 0 1 0 0 0 3 5 1 1 0 1 0 0 1 0 0 1 0 0 1 0 0 15 0 1857.8493 O94906 O94906 884 898 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 1.8206E-05 71.08 2 0.56951 0.59827 NaN 1 Median 0.56951 0.59827 NaN 1 0 Median NaN NaN NaN 0 0 Median 22149000 18478000 3671000 22149000 18478000 3671000 0 0 0 4092 1418 4205 10750;10751 16802;16803 16803 2 FELSCYSLAPQIK YVSHGATGKGNDQVRFELSCYSLAPQIKVI VRFELSCYSLAPQIKVIAPWRMPEFYNRFK R F E I K V 1 0 0 0 1 1 1 0 0 1 2 1 0 1 1 2 0 0 1 0 0 0 13 0 1554.7752 Q5T6L4;P00966;A8KAP9;A0A0S2Z3D8;Q5T6L6;A0A0S2Z3B6 Q5T6L4 128 140 ASS;ASS1 Argininosuccinate synthase yes no 2 5.4124E-06 105.86 2 2 2.0999 2.1412 25.595 2 Median 2.0999 2.1412 25.595 2 0 Median NaN NaN NaN 0 0 Median 33114000 9035100 24079000 30813000 9035100 21778000 2301200 0 2301200 4093 1437 4206 10752;10753;10754;10755 16804;16805;16806;16807;16808;16809;16810 16804 7 FELTGIPPAPR EGERAMTKDNNLLGKFELTGIPPAPRGVPQ LLGKFELTGIPPAPRGVPQIEVTFDIDANG K F E P R G 1 1 0 0 0 0 1 1 0 1 1 0 0 1 3 0 1 0 0 0 0 0 11 0 1196.6554 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96H53;E9PS65;Q96BE0;E9PM13 V9HW22 459 469 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.02976 39.022 2 0.77996 0.88647 3.5341 2 Median 0.77996 0.88647 3.5341 2 0 Median NaN NaN NaN 0 0 Median 238400000 136430000 101970000 238400000 136430000 101970000 0 0 0 4094 1467 4207 10756;10757 16811;16812 16811 2 FEMEQNLR DIDNTRMTLDDFRIKFEMEQNLRQGVDADI LDDFRIKFEMEQNLRQGVDADINGLRQVLD K F E L R Q 0 1 1 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 1065.4913 CON__P35527;P35527;K7EQQ3 CON__P35527 243 250 KRT9 Keratin, type I cytoskeletal 9 yes no 2 4.4233E-06 128.57 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 296410000 296410000 0 292550000 292550000 0 3863100 3863100 0 + 4095 1165 4208;4209 10758;10759;10760;10761;10762 16813;16814;16815;16816;16817 16813 878 5 FENLGIQPPK ELVEAIVLPMNHKEKFENLGIQPPKGVLMY NHKEKFENLGIQPPKGVLMYGPPGTGKTLL K F E P K G 0 0 1 0 0 1 1 1 0 1 1 1 0 1 2 0 0 0 0 0 0 0 10 0 1141.6132 E9PM69;R4GNH3;A0A140VK42;P17980;A8K781;E9PKD5;E9PMD8;E9PN50 E9PM69 170 179 PSMC3 26S protease regulatory subunit 6A yes no 2 0.0059721 67.494 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8594700 0 8594700 8594700 0 8594700 0 0 0 4096 617 4210 10763 16818;16819 16818 2 FEPEYSQIK NDGLFYYEQDLWAEKFEPEYSQIKQEVENF DLWAEKFEPEYSQIKQEVENFKKVNMISRE K F E I K Q 0 0 0 0 0 1 2 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 9 0 1139.5499 E5RH50;A0A0B4J210;Q6PKG0;H0YC33 E5RH50 490 498 LARP1 La-related protein 1 yes no 2 0.042582 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13136000 0 13136000 13136000 0 13136000 0 0 0 4097 500 4211 10764 16820 16820 1 FEPPQSDSDGQR EERDERHKTKGRLSRFEPPQSDSDGQRRSM LSRFEPPQSDSDGQRRSMDAPSRRNRSSGV R F E Q R R 0 1 0 2 0 2 1 1 0 0 0 0 0 1 2 2 0 0 0 0 0 0 12 0 1361.5848 O15042;E7ET15;B4DK81;E7EW00;H0Y8D9 O15042 231 242 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.048295 42.001 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3443200 0 3443200 3443200 0 3443200 0 0 0 4098 1374 4212 10765 16821 16821 1 FEPQVDTEAEDMISAVK ENGLGKTDRKKEIVKFEPQVDTEAEDMISA PQVDTEAEDMISAVKSRRLLAIQAKKEREI K F E V K S 2 0 0 2 0 1 3 0 0 1 0 1 1 1 1 1 1 0 0 2 0 0 17 0 1907.8823 Q9UIG0 Q9UIG0 827 843 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 4.6575E-20 129.54 3 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140770000 0 140770000 117970000 0 117970000 22797000 0 22797000 4099 2103 4213;4214 10766;10767;10768;10769;10770;10771;10772 16822;16823;16824;16825;16826;16827;16828 16824 1925 7 FEPYANPTK NEKRKEKNIKRGGNRFEPYANPTKRYRAFI KRGGNRFEPYANPTKRYRAFITNIPFDVKW R F E T K R 1 0 1 0 0 0 1 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 9 0 1065.5131 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 61 69 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.0016784 82.279 2 1 1.3878 1.5939 34.724 3 Plateau 1.3779 1.568 2.3182 2 0 Median 1.0802 0.85988 NaN 1 0 Median 316450000 132310000 184130000 306570000 127350000 179220000 9877800 4966100 4911700 4100 1599 4215 10773;10774;10775 16829;16830;16831;16832;16833 16831 5 FEQLEWR RFLSGSRDGTARIWRFEQLEWRSILLDMAT DGTARIWRFEQLEWRSILLDMATRISGDLS R F E W R S 0 1 0 0 0 1 2 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 7 0 1006.4872 Q9NSI6;Q5R2U6;H0Y463;Q5R2U9;H0Y500;Q5R2U8;H0Y5I9;Q5R2U5;H0Y4A7;Q5R2U4;H0Y4R9 Q9NSI6 397 403 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.026652 79.469 1 1 1.0193 0.96512 29.672 2 Median 0.77462 0.78246 NaN 1 0 Median 1.3413 1.1904 NaN 1 0 Median 11312000 7334300 3977300 10035000 6767400 3267400 1276800 566890 709880 4101 2068 4216 10776;10777 16834;16835;16836 16834 3 FESILPR ERGEEPGKSCGYSVRFESILPRPHASIMFC KSCGYSVRFESILPRPHASIMFCTVGVLLR R F E P R P 0 1 0 0 0 0 1 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 7 0 860.4756 Q08211;Q58F26;Q6PJK6 Q08211 475 481 DHX9 ATP-dependent RNA helicase A yes no 2 0.010057 118.01 2 1 1.3263 1.5104 11.46 3 Median 1.3175 1.5155 0.47574 2 0 Median 1.464 1.2427 NaN 1 0 Median 384290000 172730000 211560000 375070000 169250000 205820000 9220000 3477100 5742900 4102 1691 4217 10778;10779;10780 16837;16838;16839;16840;16841 16840 5 FESLEPEMNNQASR QIPEKLEDLEVIQHRFESLEPEMNNQASRV RFESLEPEMNNQASRVAVVNQIARQLMHSG R F E S R V 1 1 2 0 0 1 3 0 0 0 1 0 1 1 1 2 0 0 0 0 0 0 14 0 1650.7308 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082 D6W5C0 805 818 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00017751 61.344 2 1.6283 1.6325 1.1483 2 Median 1.6283 1.6325 1.1483 2 0 Median NaN NaN NaN 0 0 Median 22997000 6908300 16089000 22997000 6908300 16089000 0 0 0 4103 415 4218 10781;10782 16842;16843 16843 302 2 FESPEVAER IKMENGKSKGCGVVKFESPEVAERACRMMN GCGVVKFESPEVAERACRMMNGMKLSGREI K F E E R A 1 1 0 0 0 0 3 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1062.4982 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;Q8TCM5 P52272 699 707 HNRNPM;ORF;HNRPM;DKFZp547H118 Heterogeneous nuclear ribonucleoprotein M yes no 2 0.00034716 101.25 2 2 1.1977 1.1646 39.296 4 Median 1.4105 1.6459 1.8702 2 0 Median 1.0172 0.83354 0.23905 2 0 Median 528190000 205060000 323130000 500640000 190810000 309820000 27554000 14250000 13304000 4104 1599 4219 10783;10784;10785;10786 16844;16845;16846;16847;16848;16849;16850 16845 7 FETEQALR QIDNARLAADDFRTKFETEQALRLSVEADI ADDFRTKFETEQALRLSVEADINGLRRVLD K F E L R L 1 1 0 0 0 1 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 8 0 992.49271 CON__Q04695;Q04695;F5GWP8;B4DE59 CON__Q04695 173 180 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.0041629 91.626 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18647000 18647000 0 18647000 18647000 0 0 0 0 + 4105 1168;964 4220 10787 16851 16851 1 FETFQTITSYIK AFDQRHLDDINFDVRFETFQTITSYIKEMQ DVRFETFQTITSYIKEMQIVDVNYLIPVMH R F E I K E 0 0 0 0 0 1 1 0 0 2 0 1 0 2 0 1 3 0 1 0 0 0 12 0 1476.75 O75691 O75691 1450 1461 UTP20 Small subunit processome component 20 homolog yes yes 2 1.0078E-12 131.28 2 2 1.359 1.3815 12.499 3 Median 1.2992 1.3173 6.7234 2 0 Median 2.0616 1.6093 NaN 1 0 Median 70027000 34797000 35230000 53754000 26908000 26846000 16273000 7888500 8384200 4106 1412 4221 10788;10789;10790;10791 16852;16853;16854;16855;16856;16857 16852 6 FETLQAQAGK AKCSRAEAEAWYQTKFETLQAQAGKHGDDL WYQTKFETLQAQAGKHGDDLRNTRNEISEM K F E G K H 2 0 0 0 0 2 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 10 0 1091.5611 CON__P08729;CON__Q9DCV7;CON__Q3KNV1;P08729 CON__Q3KNV1 287 296 KRT7 Keratin, type II cytoskeletal 7 no no 2 9.5484E-06 105.57 1 1 1.1577 1.1172 20.801 2 Median 1.1472 1.2942 NaN 1 0 Median 1.1683 0.96441 NaN 1 0 Median 144090000 64030000 80058000 132770000 58934000 73835000 11319000 5096200 6222900 + 4107 1171;1158 4222 10792;10793 16858;16859 16858 2 FEVNPVWK LYGDADYLEERHRHRFEVNPVWKKCLEEQG EERHRHRFEVNPVWKKCLEEQGLKFVGQDV R F E W K K 0 0 1 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 2 0 0 8 0 1017.5284 P17812;B4E1E0 P17812 482 489 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.024215 56.011 2 1.7992 1.8778 4.2592 2 Median 1.7992 1.8778 4.2592 2 0 Median NaN NaN NaN 0 0 Median 33371000 10828000 22542000 33371000 10828000 22542000 0 0 0 4108 1494 4223 10794;10795 16860;16861 16860 2 FFAPALISVSLPVR MGMQPHLQALLSLYKFFAPALISVSLPVRK KFFAPALISVSLPVRKKIYFKNSENLWKTA K F F V R K 2 1 0 0 0 0 0 0 0 1 2 0 0 2 2 2 0 0 0 2 0 0 14 0 1515.8813 B4DZL4;A0A024RCG4;Q92674 B4DZL4 244 257 FSHPRH1;CENPI Centromere protein I yes no 2 6.5745E-05 90.685 2 0.74759 0.75075 2.1619 2 Median 0.74759 0.75075 2.1619 2 0 Median NaN NaN NaN 0 0 Median 16616000 8849500 7766700 16616000 8849500 7766700 0 0 0 4109 360 4224 10796;10797 16862;16863;16864;16865 16865 4 FFAPALISVSLPVRK MGMQPHLQALLSLYKFFAPALISVSLPVRK FFAPALISVSLPVRKKIYFKNSENLWKTAL K F F R K K 2 1 0 0 0 0 0 0 0 1 2 1 0 2 2 2 0 0 0 2 0 0 15 1 1643.9763 B4DZL4;A0A024RCG4;Q92674 B4DZL4 244 258 FSHPRH1;CENPI Centromere protein I yes no 3 0.0076341 27.208 1 1.7727 1.5966 NaN 1 Median NaN NaN NaN 0 0 Median 1.7727 1.5966 NaN 1 0 Median 1946800 741560 1205300 0 0 0 1946800 741560 1205300 4110 360 4225 10798 16866 16866 1 FFDCDSLVCLCEFK SESVLAVAGDEEVIRFFDCDSLVCLCEFKA RFFDCDSLVCLCEFKAHENRVKDMFSFEIP R F F F K A 0 0 0 2 3 0 1 0 0 0 2 1 0 3 0 1 0 0 0 1 0 0 14 0 1838.7678 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 229 242 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 3.3166E-09 113.22 2 2 1.0782 0.95471 16.81 4 Median 0.84053 0.85415 2.5934 2 0 Median 1.3977 1.1224 9.7424 2 0 Median 63019000 31555000 31464000 40495000 21883000 18613000 22524000 9671700 12852000 4111 580 4226 10799;10800;10801;10802 16867;16868;16869;16870;16871;16872;16873;16874;16875 16869 9 FFDDPMLLELAK TRRRKGLSEDVSISKFFDDPMLLELAKQDV ISKFFDDPMLLELAKQDVVLNYPM______ K F F A K Q 1 0 0 2 0 0 1 0 0 0 3 1 1 2 1 0 0 0 0 0 0 0 12 0 1437.7214 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;K7EP67 B4DZB1 903 914 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 1.5349E-05 94.692 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14685000 14685000 0 14685000 14685000 0 0 0 0 4112 794 4227 10803;10804 16876;16877 16876 636 2 FFESFGDLSSADAILGNPK EALGRLLVVYPWTQRFFESFGDLSSADAIL FGDLSSADAILGNPKVKAHGKKVLDSFCEG R F F P K V 2 0 1 2 0 0 1 2 0 1 2 1 0 3 1 3 0 0 0 0 0 0 19 0 2013.9684 CON__Q3SX09 CON__Q3SX09 96 114 yes yes 2 3.4438E-53 157.52 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 145640000 145640000 0 145640000 145640000 0 0 0 0 + 4113 1172 4228 10805;10806 16878;16879;16880;16881 16879 4 FFEVILIDPFHK RVLNSYWVGEDSTYKFFEVILIDPFHKAIR TYKFFEVILIDPFHKAIRRNPDTQWITKPV K F F H K A 0 0 0 1 0 0 1 0 1 2 1 1 0 3 1 0 0 0 0 1 0 0 12 0 1503.8126 A0A024R2Q4;P61313;E7EQV9;E7ENU7 A0A024R2Q4 129 140 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2;3 3.1006E-08 113.93 5 3 0.83772 0.71519 18.803 6 Median 0.87431 0.93964 24.303 3 0 Median 0.80266 0.67327 7.1484 3 0 Median 312960000 169140000 143830000 163970000 87805000 76163000 148990000 81332000 67663000 4114 121 4229 10807;10808;10809;10810;10811;10812;10813;10814 16882;16883;16884;16885;16886;16887;16888;16889;16890;16891;16892 16884 11 FFFDPSAR TQTSQVLTAVDKDNKFFFDPSARDQVTYQQ AVDKDNKFFFDPSARDQVTYQQLRERCVCD K F F A R D 1 1 0 1 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 8 0 985.46577 A0A075B730;A0A087X1U6;P58107 A0A075B730 1377 1384 EPPK1 Epiplakin no no 2 0.022274 57.281 1 1.7079 1.751 NaN 1 Median 1.7079 1.751 NaN 1 0 Median NaN NaN NaN 0 0 Median 25929000 9754700 16175000 25929000 9754700 16175000 0 0 0 4115 397;1622 4230 10815 16893 16893 1 FFGGYVPEMVLTPDDQR NLGNFINRAGMFVSKFFGGYVPEMVLTPDD GGYVPEMVLTPDDQRLLAHVTLELQHYHQL K F F Q R L 0 1 0 2 0 1 1 2 0 0 1 0 1 2 2 0 1 0 1 2 0 0 17 0 1969.9244 A8K492;P56192;B4DF61;H0YIP0 A8K492 664 680 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.0047335 41.242 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6777600 0 6777600 6777600 0 6777600 0 0 0 4116 732 4231 10816 16894 16894 567 1 FFGQHDR PAKALRDKDGQVDARFFGQHDRAWVPINNC KDGQVDARFFGQHDRAWVPINNCYLMSKEI R F F D R A 0 1 0 1 0 1 0 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 905.4144 A0A087WVZ6;A6H8Y8;A0A087WV57;Q5JV90;H7C4X9;A0A087WYS3;Q9ULU4 A0A087WVZ6 302 308 ZMYND8;DKFZp564P1772 Protein kinase C-binding protein 1 no no 3 0.03231 36.395 1 0.65598 0.65501 NaN 1 Median 0.65598 0.65501 NaN 1 0 Median NaN NaN NaN 0 0 Median 6998600 4187800 2810800 6998600 4187800 2810800 0 0 0 4117 422;1317 4232 10817 16895 16895 1 FFGTAVTCLLSPHSQVLTAATQSLK LVRLQWDLGLGHLPRFFGTAVTCLLSPHSQ SPHSQVLTAATQSLKEILKECVAPHMADIG R F F L K E 3 0 0 0 1 2 0 1 1 0 4 1 0 2 1 3 4 0 0 2 0 0 25 0 2676.3945 B3KMR5;Q5JTH9;B3KY97 B3KMR5 416 440 RRP12 RRP12-like protein yes no 3 1.3922E-06 46.982 2 1 1.4011 1.1418 8.2512 3 Plateau 1.0445 1.0614 10.03 2 0 Median 1.4725 1.1418 NaN 1 0 Median 32214000 12932000 19282000 19319000 8145700 11174000 12895000 4785800 8108800 4118 907 4233 10818;10819;10820 16896;16897;16898;16899;16900 16898 5 FFGTEDHAWIK KDLKKPRGKKCFFVKFFGTEDHAWIKVEQL FFVKFFGTEDHAWIKVEQLKPYHAHKEEMI K F F I K V 1 0 0 1 0 0 1 1 1 1 0 1 0 2 0 0 1 1 0 0 0 0 11 0 1349.6404 D3DUE6;K7EMM8;D3DUE7;Q49A26;K7EQB2 D3DUE7 68 78 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 3 0.002653 45.661 1 1.191 1.2188 NaN 1 Median 1.191 1.2188 NaN 1 0 Median NaN NaN NaN 0 0 Median 25648000 10563000 15085000 25648000 10563000 15085000 0 0 0 4119 1194;1193;1346 4234 10821 16901 16901 1 FFHLAFEEEFGR DVTTTSTRIGKFEARFFHLAFEEEFGRVKG EARFFHLAFEEEFGRVKGHFGPINSVAFHP R F F G R V 1 1 0 0 0 0 3 1 1 0 1 0 0 4 0 0 0 0 0 0 0 0 12 0 1527.7147 Q5U0F4;Q53HU7;Q13347;Q9P1D9 Q5U0F4 269 280 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 3 0.048856 29.303 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1380800 0 1380800 1380800 0 1380800 0 0 0 4120 1711 4235 10822 16902 16902 1 FFLLENVR LVVSFLSYCDYYRPRFFLLENVRNFVSFKR CDYYRPRFFLLENVRNFVSFKRSMVLKLTL R F F V R N 0 1 1 0 0 0 1 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 8 0 1036.5706 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0;K7ENW7 A0A024R7E3 1324 1331 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0086589 77.674 2 0.53346 0.53506 4.3081 2 Median 0.53346 0.53506 4.3081 2 0 Median NaN NaN NaN 0 0 Median 30527000 20379000 10149000 30527000 20379000 10149000 0 0 0 4121 222 4236 10823;10824 16903;16904;16905 16904 3 FFLSLYGHK LLDCTVKIFYVDTLKFFLSLYGHKLPVICM YVDTLKFFLSLYGHKLPVICMDISHDGALI K F F H K L 0 0 0 0 0 0 0 1 1 0 2 1 0 2 0 1 0 0 1 0 0 0 9 0 1110.5862 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 583 591 WDR3 WD repeat-containing protein 3 yes no 2;3 0.0042156 69.825 4 0.93555 0.94323 79.689 2 Median 0.93555 0.94323 79.689 2 0 Median NaN NaN NaN 0 0 Median 61428000 16264000 45164000 61428000 16264000 45164000 0 0 0 4122 1827 4237 10825;10826;10827;10828 16906;16907;16908;16909;16910;16911;16912 16907 7 FFMGNQVLK FSVLGFCKSSQVQRRFFMGNQVLKVFAARD SQVQRRFFMGNQVLKVFAARDDEAAAVALS R F F L K V 0 0 1 0 0 1 0 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 9 0 1082.5583 P13010;Q53T09 P13010 355 363 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.00014834 102.71 3 0.57546 0.62472 4.8603 3 Median 0.57546 0.62472 4.8603 3 0 Median NaN NaN NaN 0 0 Median 155500000 92669000 62835000 155500000 92669000 62835000 0 0 0 4123 1476 4238 10829;10830;10831 16913;16914;16915;16916;16917;16918 16918 1219 6 FFNYVPSGIR ______________________________ VHRVRFFNYVPSGIRCVAYNNQSNRLAVSR R F F I R C 0 1 1 0 0 0 0 1 0 1 0 0 0 2 1 1 0 0 1 1 0 0 10 0 1198.6135 Q969X6;H3BPD7 Q969X6 11 20 CIRH1A Cirhin yes no 2 1.4912E-05 101.54 2 2 1.0104 0.98078 1.8165 4 Median 0.85992 0.97445 2.2675 2 0 Median 1.1902 0.98469 1.9144 2 0 Median 190690000 101080000 89609000 171380000 91954000 79431000 19304000 9126400 10178000 4124 1955 4239 10832;10833;10834;10835 16919;16920;16921;16922;16923;16924;16925 16922 7 FFPGHESR TVEIYNLSANYFQEKFFPGHESRATEALCW ANYFQEKFFPGHESRATEALCWAEGQRLFS K F F S R A 0 1 0 0 0 0 1 1 1 0 0 0 0 2 1 1 0 0 0 0 0 0 8 0 975.45626 Q969X6;H3BSH7;H3BPD7;I3L4T9 Q969X6 54 61 CIRH1A Cirhin yes no 2;3 0.0023086 73.665 3 0.92613 0.98403 1.2666 2 Median 0.92613 0.98403 1.2666 2 0 Median NaN NaN NaN 0 0 Median 71741000 28070000 43671000 71741000 28070000 43671000 0 0 0 4125 1955 4240 10836;10837;10838 16926;16927;16928;16929;16930 16930 5 FFPLIEVNK SGEIRATAFNEQVDKFFPLIEVNKVYYFSK NEQVDKFFPLIEVNKVYYFSKGTLKIANKQ K F F N K V 0 0 1 0 0 0 1 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 9 0 1105.6172 P27694;I3L4R8 P27694 245 253 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.019553 51.059 1 0.63571 0.66176 NaN 1 Median 0.63571 0.66176 NaN 1 0 Median NaN NaN NaN 0 0 Median 14921000 8585800 6334800 14921000 8585800 6334800 0 0 0 4126 1525 4241 10839 16931 16931 1 FFQEENTEK DYIRTQIISKKINTKFFQEENTEKLKLKYY KKINTKFFQEENTEKLKLKYYNLMIQLDQH K F F E K L 0 0 1 0 0 1 3 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 9 0 1170.5193 A0A0S2Z489;O00232;A0A0S2Z476 A0A0S2Z489 213 221 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 0.00013872 96.624 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31615000 0 31615000 31615000 0 31615000 0 0 0 4127 558 4242 10840;10841 16932;16933 16933 2 FFQGSQEFLASASASAER RRNMAYRARSKSRDRFFQGSQEFLASASAS GSQEFLASASASAERSCTPSPDQISHRASL R F F E R S 4 1 0 0 0 2 2 1 0 0 1 0 0 3 0 4 0 0 0 0 0 0 18 0 1931.9014 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 253 270 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 6.6627E-06 71.513 2 1 1.3286 1.2087 21.68 2 Median 1.4237 1.409 NaN 1 0 Median 1.2398 1.0369 NaN 1 0 Median 25433000 8634200 16799000 22226000 7216400 15010000 3206900 1417700 1789200 4128 1873 4243 10842;10843;10844 16934;16935;16936 16934 3 FFSGYGR IGRLSYNVREKDIQRFFSGYGRLLEVDLKN VREKDIQRFFSGYGRLLEVDLKNGYGFVEF R F F G R L 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 1 0 0 1 0 0 0 7 0 832.38679 V9HVZ0;A8K588;Q13247;Q59GY3;B5BU15 V9HVZ0 21 27 HEL-S-91;SRSF6;SFRS6 Serine/arginine-rich splicing factor 6 yes no 2 0.0012452 137.44 1 1.4331 1.6375 NaN 1 Median 1.4331 1.6375 NaN 1 0 Median NaN NaN NaN 0 0 Median 124930000 46460000 78474000 124930000 46460000 78474000 0 0 0 4129 748 4244 10845 16937;16938 16938 2 FFTDDLFQYAGEK HPKRRKLLEDYKVPKFFTDDLFQYAGEKRR PKFFTDDLFQYAGEKRRPPYRWFVMGPPRS K F F E K R 1 0 0 2 0 1 1 1 0 0 1 1 0 3 0 0 1 0 1 0 0 0 13 0 1579.7195 B2WTI3;B2WTI4;K7EJU9;A0A0S2PZM4;Q6NYC1 B2WTI3 155 167 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 yes no 2 7.4082E-06 103.34 2 1.5498 1.566 13.371 2 Median 1.5498 1.566 13.371 2 0 Median NaN NaN NaN 0 0 Median 19743000 7153000 12590000 19743000 7153000 12590000 0 0 0 4130 543 4245 10846;10847 16939;16940 16939 2 FFTESR ADGSETPEPFAAEAKFFTESRLLQRDVQII PEPFAAEAKFFTESRLLQRDVQIILESCHN K F F S R L 0 1 0 0 0 0 1 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 6 0 785.3708 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8 A0A140VK49 250 255 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.041196 77.748 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4131 618 4246 10848 16941 16941 1 FFTTPSK GKKDARQTPKKPEAKFFTTPSKSVRKASHT TPKKPEAKFFTTPSKSVRKASHTPKKWPKK K F F S K S 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 1 2 0 0 0 0 0 7 0 826.4225 O76021 O76021 462 468 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 0.010632 110.61 2 0.62908 0.74433 5.9427 2 Median 0.62908 0.74433 5.9427 2 0 Median NaN NaN NaN 0 0 Median 1478500000 850980000 627480000 1478500000 850980000 627480000 0 0 0 4132 1415 4247 10849;10850 16942;16943;16944;16945;16946 16943 5 FFVADTANEALEAAK QSKKLMSDNGVRVQRFFVADTANEALEAAK FFVADTANEALEAAKRLNAKEIVLKAQILA R F F A K R 5 0 1 1 0 0 2 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 15 0 1595.7831 A0A024R325;Q96I99;E9PDQ8 A0A024R325 59 73 SUCLG2 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.0020411 64.121 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12627000 0 12627000 12627000 0 12627000 0 0 0 4133 126 4248 10851 16947 16947 1 FFVAPFPEVFGK HQGLPQEVLNENLLRFFVAPFPEVFGKEKV LLRFFVAPFPEVFGKEKVNELSKDIGSEST R F F G K E 1 0 0 0 0 0 1 1 0 0 0 1 0 4 2 0 0 0 0 2 0 0 12 0 1383.7227 CON__P02662 CON__P02662 23 34 yes yes 2 2.0553E-05 101.11 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38776000 38776000 0 38776000 38776000 0 0 0 0 + 4134 1151 4249 10852;10853 16948;16949;16950;16951 16950 4 FGAEDLFK NSNPFNKEELTAILKFGAEDLFKELEGEES ELTAILKFGAEDLFKELEGEESEPQEMDID K F G F K E 1 0 0 1 0 0 1 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 8 0 925.45453 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 974 981 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0099928 73.26 1 0.84666 0.8619 NaN 1 Median 0.84666 0.8619 NaN 1 0 Median NaN NaN NaN 0 0 Median 26107000 14732000 11375000 26107000 14732000 11375000 0 0 0 4135 354 4250 10854 16952;16953 16953 2 FGAPPHAGGGIGLER GIDLEKIKAYIDSFRFGAPPHAGGGIGLER FGAPPHAGGGIGLERVTMLFLGLHNVRQTS R F G E R V 2 1 0 0 0 0 1 5 1 1 1 0 0 1 2 0 0 0 0 0 0 0 15 0 1434.7368 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 428 442 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 0.00097854 55.885 2 1.3746 1.5546 NaN 1 Median 1.3746 1.5546 NaN 1 0 Median NaN NaN NaN 0 0 Median 81682000 21572000 60110000 81682000 21572000 60110000 0 0 0 4136 610 4251 10855;10856 16954;16955 16955 2 FGAQQDTIEVPEK LKQLVAEQVTYQRNRFGAQQDTIEVPEKDL NRFGAQQDTIEVPEKDLVDKARQINIHNLS R F G E K D 1 0 0 1 0 2 2 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 13 0 1460.7147 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6;Q9BWF4 B4DSV5 721 733 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 9.9151E-09 115.18 2 2 1.5969 1.4387 52.555 4 Median 2.1572 2.1771 1.5433 2 0 Median 1.1063 0.88316 11.975 2 0 Median 34874000 12098000 22776000 28973000 9190900 19782000 5901400 2907500 2993900 4137 955 4252 10857;10858;10859;10860 16956;16957;16958;16959 16957 4 FGDPECQVILPLLK MLTKNGPKVLEFNCRFGDPECQVILPLLKS RFGDPECQVILPLLKSDLYEVIQSTLDGLL R F G L K S 0 0 0 1 1 1 1 1 0 1 3 1 0 1 2 0 0 0 0 1 0 0 14 0 1627.8644 Q3B7A7;Q59HH3;P22102;Q15374 Q3B7A7 293 306 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 3.6498E-14 126.19 2 1 2.1481 2.1777 40.36 3 Plateau 2.179 2.1766 0.069221 2 0 Median 1.33 1.0819 NaN 1 0 Median 60537000 19003000 41534000 53458000 16248000 37210000 7079300 2755600 4323600 4138 1507 4253 10861;10862;10863 16960;16961;16962;16963;16964 16961 5 FGDPVVQSDMK PQNTVFDAKRLIGRKFGDPVVQSDMKHWPF IGRKFGDPVVQSDMKHWPFQVINDGDKPKV K F G M K H 0 0 0 2 0 1 0 1 0 0 0 1 1 1 1 1 0 0 0 2 0 0 11 0 1221.57 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4E388;B4DNX1 A8K5I0 78 88 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 7.8505E-06 106.4 2 0.78102 0.88052 19.4 2 Median 0.78102 0.88052 19.4 2 0 Median NaN NaN NaN 0 0 Median 255650000 155160000 100490000 255650000 155160000 100490000 0 0 0 4139 533 4254 10864;10865 16965;16966;16967;16968;16969 16967 393 5 FGEAIGMGFPVK ARQLREQVNDLFSRKFGEAIGMGFPVKVPY SRKFGEAIGMGFPVKVPYRKITINPGCVVV K F G V K V 1 0 0 0 0 0 1 3 0 1 0 1 1 2 1 0 0 0 0 1 0 0 12 0 1251.6322 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9;B4DM07 X5D2J9 839 850 GTF2I General transcription factor II-I yes no 2 0.00032416 72.643 3 2.5961 2.6788 NaN 1 Median 2.5961 2.6788 NaN 1 0 Median NaN NaN NaN 0 0 Median 10944000 5695800 5248400 10944000 5695800 5248400 0 0 0 4140 789 4255 10866;10867;10868 16970;16971;16972 16970 628 3 FGEINDQDR PVCDCQAHLLWNRPRFGEINDQDRTDRYVQ LWNRPRFGEINDQDRTDRYVQALRTVLKPD R F G D R T 0 1 1 2 0 1 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 9 0 1092.4836 H3BNC0;A0A024R6Z2;A0A024R726;Q9NVM4 H3BNC0 379 387 PRMT7 Protein arginine N-methyltransferase 7 yes no 2 0.0028494 80.219 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4141 211 4256 10869 16973 16973 1 FGESTTGFNFSFK ASPLASSPVRKNLFRFGESTTGFNFSFKSA FRFGESTTGFNFSFKSALSPSKSPAKLNQS R F G F K S 0 0 1 0 0 0 1 2 0 0 0 1 0 4 0 2 2 0 0 0 0 0 13 0 1467.667 P49792 P49792 2260 2272 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0082577 55.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4142 1588 4257 10870 16974 16974 1 FGEVSDVEIITR SQDISEADLQNQFSRFGEVSDVEIITRKDD FSRFGEVSDVEIITRKDDQGNPQKVFAYIN R F G T R K 0 1 0 1 0 0 2 1 0 2 0 0 0 1 0 1 1 0 0 2 0 0 12 0 1363.6983 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H532;F5H0I5;F5GXV1 A0A024R250 31 42 NOL8 Nucleolar protein 8 yes no 2 0.0014428 82.171 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13975000 0 13975000 13975000 0 13975000 0 0 0 4143 104 4258 10871;10872 16975;16976 16976 2 FGEVVLQPPELTAR AADRLEQELLRDTVKFGEVVLQPPELTARP KFGEVVLQPPELTARPQRSVSKDQPGRRSQ K F G A R P 1 1 0 0 0 1 2 1 0 0 2 0 0 1 2 0 1 0 0 2 0 0 14 0 1554.8406 H6QX63;Q6PK04;I3L0U5 H6QX63 214 227 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 4.8873E-05 93.258 2 2 0.77724 0.74224 8.6501 4 Median 0.69963 0.74224 1.7508 2 0 Median 0.93769 0.79252 13.359 2 0 Median 57469000 36774000 20695000 48269000 31798000 16471000 9200700 4976600 4224100 4144 1307 4259 10873;10874;10875;10876 16977;16978;16979;16980;16981;16982;16983;16984;16985 16981 9 FGEVVLQPPELTARPQR AADRLEQELLRDTVKFGEVVLQPPELTARP EVVLQPPELTARPQRSVSKDQPGRRSQMLR K F G Q R S 1 2 0 0 0 2 2 1 0 0 2 0 0 1 3 0 1 0 0 2 0 0 17 1 1936.053 H6QX63;Q6PK04;I3L0U5 H6QX63 214 230 CCDC137 Coiled-coil domain-containing protein 137 yes no 3 3.0186E-05 74.12 2 2 0.84281 0.78981 11.878 4 Median 0.81112 0.88656 11.728 2 0 Median 0.85395 0.75025 2.6544 2 0 Median 61506000 34925000 26582000 48719000 27942000 20778000 12787000 6983100 5804100 4145 1307 4260 10877;10878;10879;10880 16986;16987;16988;16989;16990;16991;16992 16988 7 FGEYNSNMSPEEK EYKERDKSNVFRDKRFGEYNSNMSPEEKMM KRFGEYNSNMSPEEKMMKRFALEQQRHHEK R F G E K M 0 0 2 0 0 0 3 1 0 0 0 1 1 1 1 2 0 0 1 0 0 0 13 0 1530.6297 A8KA74;P78316;E9PFK5 A8KA74 88 100 NOP14 Nucleolar protein 14 yes no 2 0.023541 41.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4146 790 4261 10881 16993 16993 630 1 FGFAESIANQR KALENDQKVRKEGGKFGFAESIANQRITAF EGGKFGFAESIANQRITAFKMEKAPIDTSD K F G Q R I 2 1 1 0 0 1 1 1 0 1 0 0 0 2 0 1 0 0 0 0 0 0 11 0 1238.6044 B4DXG8;A5PLM5;Q06265;D6RIY6 B4DXG8 282 292 EXOSC9 Exosome complex component RRP45 yes no 2 0.00026065 91.867 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8294200 0 8294200 8294200 0 8294200 0 0 0 4147 675 4262 10882 16994 16994 1 FGFELVK FRMKLRNLFTKFIRKFGFELVKRLLPEEYH LFTKFIRKFGFELVKRLLPEEYHRVLVNIR K F G V K R 0 0 0 0 0 0 1 1 0 0 1 1 0 2 0 0 0 0 0 1 0 0 7 0 838.45889 B3KMR5;Q5JTH9;B3KY97;B3KPQ2 B3KMR5 1015 1021 RRP12 RRP12-like protein yes no 2 0.037563 60.788 2 1.3325 1.4009 5.9481 2 Median 1.3325 1.4009 5.9481 2 0 Median NaN NaN NaN 0 0 Median 61747000 26986000 34761000 61747000 26986000 34761000 0 0 0 4148 907 4263 10883;10884 16995;16996;16997;16998 16995 4 FGFGFGGTGK GWSTMQASLDLGTDKFGFGFGGTGKKSHNK LGTDKFGFGFGGTGKKSHNKQFDNYGEEFT K F G G K K 0 0 0 0 0 0 0 5 0 0 0 1 0 3 0 0 1 0 0 0 0 0 10 0 973.46577 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 82 91 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 1.2187E-06 111.82 2 1 1.2133 1.2811 7.4728 3 Median 1.2033 1.284 0.31123 2 0 Median 1.3895 1.1282 NaN 1 0 Median 72498000 32962000 39536000 69631000 31596000 38035000 2866900 1366400 1500600 4149 452 4264 10885;10886;10887 16999;17000;17001;17002;17003 17000 5 FGFPEGSVELYAEK KGRRIRELTAVVQKRFGFPEGSVELYAEKV RFGFPEGSVELYAEKVATRGLCAIAQAESL R F G E K V 1 0 0 0 0 0 3 2 0 0 1 1 0 2 1 1 0 0 1 1 0 0 14 0 1571.7508 P23396;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;A7E2S3 P23396 77 90 RPS3 40S ribosomal protein S3 yes no 2 3.9303E-05 118.9 2 2 1.0666 1.0567 20.855 4 Median 1.0784 1.2671 1.3582 2 0 Median 1.0598 0.8833 1.0239 2 0 Median 769590000 372730000 396860000 678790000 330540000 348250000 90800000 42191000 48609000 4150 1511 4265 10888;10889;10890;10891 17004;17005;17006;17007;17008;17009;17010;17011;17012;17013 17008 10 FGFVDAQK KWQQLQAKRYAEKRKFGFVDAQKEDMPPEH RYAEKRKFGFVDAQKEDMPPEHVRKIIRDH K F G Q K E 1 0 0 1 0 1 0 1 0 0 0 1 0 2 0 0 0 0 0 1 0 0 8 0 910.45487 Q6P2Q9;I3L0J9 Q6P2Q9 51 58 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.047133 57.177 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4536700 4536700 0 4536700 4536700 0 0 0 0 4151 1854 4266 10892 17014 17014 1 FGFYEVFK WAPTFLGYSMQGLCKFGFYEVFKVLYSNML SMQGLCKFGFYEVFKVLYSNMLGEENTYLW K F G F K V 0 0 0 0 0 0 1 1 0 0 0 1 0 3 0 0 0 0 1 1 0 0 8 0 1035.5066 F8VVM2;Q8NCF7;Q53HC3;B2RE88;A0A024RBE8;A0A024RBH9;Q00325;F8VZL5;F8VWR4;F8VWQ0 F8VVM2 137 144 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 0.027047 54.157 1 1.5709 1.6242 NaN 1 Median 1.5709 1.6242 NaN 1 0 Median NaN NaN NaN 0 0 Median 11400000 3728200 7671400 11400000 3728200 7671400 0 0 0 4152 335 4267 10893 17015 17015 1 FGGALDAAAK LVSSLTSGLLTIGDRFGGALDAAAKMFSKA TIGDRFGGALDAAAKMFSKAFDSGIIPMEF R F G A K M 4 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 10 0 919.47633 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 925 934 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.000773 69.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4153 89 4268 10894 17016 17016 1 FGGEHVPNSPFQVTALAGDQPSVQPPLR FYTAPQPGKYVICVRFGGEHVPNSPFQVTA TALAGDQPSVQPPLRSQQLAPQYTYAQGGQ R F G L R S 2 1 1 1 0 3 1 3 1 0 2 0 0 2 5 2 1 0 0 3 0 0 28 0 2944.4832 P21333;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;H0Y5F3 P21333 1726 1753 FLNA;FLJ00119 Filamin-A yes no 3 4.943E-16 66.012 2 2 1.2545 1.3141 4.4412 2 Median 1.2545 1.3141 4.4412 2 0 Median NaN NaN NaN 0 0 Median 66476000 19665000 46811000 48002000 19665000 28337000 18474000 0 18474000 4154 1504 4269 10895;10896;10897;10898 17017;17018;17019;17020;17021;17022;17023;17024;17025 17017 9 FGGGNPELLTQMVSK AKHVAEDLGKVFGERFGGGNPELLTQMVSK FGGGNPELLTQMVSKGFLGRKSGKGFYIYQ R F G S K G 0 0 1 0 0 1 1 3 0 0 2 1 1 1 1 1 1 0 0 1 0 0 15 0 1576.7919 E9KL44;P40939;B4DRH6;B4DDZ5;H0YFD6 E9KL44 611 625 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.00048946 65.395 2 1.7599 1.8296 NaN 1 Median 1.7599 1.8296 NaN 1 0 Median NaN NaN NaN 0 0 Median 16196000 8832700 7363100 16196000 8832700 7363100 0 0 0 4155 1228 4270 10899;10900 17026;17027 17027 941 2 FGGLAAGEDNGQR KVLQHEKQVYDIAAKFGGLAAGEDNGQRGY AKFGGLAAGEDNGQRGYLLTYVIAYIRDLA K F G Q R G 2 1 1 1 0 1 1 4 0 0 1 0 0 1 0 0 0 0 0 0 0 0 13 0 1290.5953 A0A1B0GWA2;B7Z3Q4;O00116;Q53SN7 A0A1B0GWA2 405 417 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 0.026695 44.425 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4156 635 4271 10901 17028 17028 1 FGGNPGGFGNQGGFGNSR EPKHNSNRQLERSGRFGGNPGGFGNQGGFG NPGGFGNQGGFGNSRGGGAGLG________ R F G S R G 0 1 3 0 0 1 0 8 0 0 0 0 0 3 1 1 0 0 0 0 0 0 18 0 1725.7608 A0A087WX29;B4DRW3;A0A0A0N0L3;A0A024R4E2;Q13148 A0A087WX29 219 236 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2 2.3443E-16 115.8 3 2 1.2551 1.1728 27.631 4 Median 1.4026 1.5039 7.1345 2 0 Median 1.1124 0.93814 3.5325 2 0 Median 92393000 39063000 53330000 80373000 33315000 47058000 12020000 5747300 6272600 4157 153 4272 10902;10903;10904;10905;10906 17029;17030;17031;17032;17033;17034;17035;17036 17031 8 FGGSGSQVDSAR KVPDDIYKTHLENNRFGGSGSQVDSARMNL NNRFGGSGSQVDSARMNLASSFVNGFVNAA R F G A R M 1 1 0 1 0 1 0 3 0 0 0 0 0 1 0 3 0 0 0 1 0 0 12 0 1166.5316 Q59EG8;Q13200;B4DM22;Q9NSM5 Q59EG8 363 374 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.011193 45.879 1 1.8694 1.6417 NaN 1 Median NaN NaN NaN 0 0 Median 1.8694 1.6417 NaN 1 0 Median 1795300 605270 1190000 0 0 0 1795300 605270 1190000 4158 1707 4273 10907 17037 17037 1 FGILIGR LLSALILACGSRLLRFGILIGRLLPQVLNS ACGSRLLRFGILIGRLLPQVLNSWSIGRDS R F G G R L 0 1 0 0 0 0 0 2 0 2 1 0 0 1 0 0 0 0 0 0 0 0 7 0 774.47521 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;E7EV54;B4DEX7 O15451 363 369 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 0.02665 75.131 1 1.0708 1.0815 NaN 1 Median 1.0708 1.0815 NaN 1 0 Median NaN NaN NaN 0 0 Median 7730900 3633400 4097500 7730900 3633400 4097500 0 0 0 4159 746 4274 10908 17038 17038 1 FGLALAVAGGVVNSALYNVDAGHR ______________________________ GVVNSALYNVDAGHRAVIFDRFRGVQDIVV K F G H R A 5 1 2 1 0 0 0 4 1 0 3 0 0 1 0 1 0 0 1 4 0 0 24 0 2370.2444 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 12 35 HEL-S-54e;PHB Prohibitin yes no 3 1.3723E-27 116.94 4 1.339 1.4545 6.1357 3 Median 1.339 1.4545 6.1357 3 0 Median NaN NaN NaN 0 0 Median 77618000 30714000 46904000 77618000 30714000 46904000 0 0 0 4160 730 4275 10909;10910;10911;10912 17039;17040;17041;17042 17041 4 FGLISSTAYAQEIQK ENATLKAELLSLKLKFGLISSTAYAQEIQK FGLISSTAYAQEIQKLSNSTAVYFQDYQTS K F G Q K L 2 0 0 0 0 2 1 1 0 2 1 1 0 1 0 2 1 0 1 0 0 0 15 0 1654.8566 D9IVD5;A0A024R241;Q16649 D9IVD5 126 140 NFIL3 Nuclear factor interleukin-3-regulated protein yes no 2 0.00097261 52.391 1 2 1.1839 0.96091 6.3013 2 Median NaN NaN NaN 0 0 Median 1.1839 0.96091 6.3013 2 0 Median 5667300 2933500 2733800 0 0 0 5667300 2933500 2733800 4161 103 4276 10913;10914;10915 17043;17044;17045;17046;17047 17047 5 FGLLDQDLSNIGPAYDNQK HPDPGSKDPEEDYPKFGLLDQDLSNIGPAY DQDLSNIGPAYDNQKQSSAVSTSGNLNGGI K F G Q K Q 1 0 2 3 0 2 0 2 0 1 3 1 0 1 1 1 0 0 1 0 0 0 19 0 2107.0222 A8K6T5;Q9UBL3;F5H8F7;B4DPT1 A8K6T5 254 272 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 1.5948E-05 66.285 2 0.81516 0.84818 0.055758 2 Median 0.81516 0.84818 0.055758 2 0 Median NaN NaN NaN 0 0 Median 23545000 10123000 13421000 23545000 10123000 13421000 0 0 0 4162 763 4277 10916;10917 17048;17049;17050;17051;17052 17052 5 FGLSAAEDITPR STCFTPDSLAALKARFGLSAAEDITPRFRA KARFGLSAAEDITPRFRAACEQQAVALTLQ R F G P R F 2 1 0 1 0 0 1 1 0 1 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1275.6459 Q9BUH6 Q9BUH6 64 75 C9orf142 Protein PAXX yes yes 2 0.0020087 84.658 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11089000 11089000 0 11089000 11089000 0 0 0 0 4163 2005 4278 10918;10919 17053;17054;17055 17055 3 FGNEVIPVTVTVK INSYTRSKAAWEAGKFGNEVIPVTVTVKGQ GKFGNEVIPVTVTVKGQPDVVVKEDEEYKR K F G V K G 0 0 1 0 0 0 1 1 0 1 0 1 0 1 1 0 2 0 0 4 0 0 13 0 1401.7868 A0A140VJX1;P24752 A0A140VJX1 231 243 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 2 0.024082 44.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4164 611 4279 10920 17056 17056 1 FGNICVVR TASLLDYDTVAGADKFGNICVVRLPPNTND TVAGADKFGNICVVRLPPNTNDEVDEDPTG K F G V R L 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 8 0 963.49602 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 1050 1057 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.012442 73.637 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11105000 0 11105000 11105000 0 11105000 0 0 0 4165 764 4280 10921;10922 17057;17058 17058 2 FGNQEDAHEFLR VSFIRDLKKIARHFRFGNQEDAHEFLRYTI HFRFGNQEDAHEFLRYTIDAMQKACLNGCA R F G L R Y 1 1 1 1 0 1 2 1 1 0 1 0 0 2 0 0 0 0 0 0 0 0 12 0 1461.6637 A0A024R8V6;Q9P275;A0A075B784;E9PEW0;Q9H9C5;K7ELR5;Q8IXW9 A0A024R8V6 203 214 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2;3 0.0022726 68.536 3 2 1.5399 1.3806 3.4718 3 Median 1.3359 1.3806 NaN 1 0 Median 1.6052 1.3538 4.6414 2 0 Median 42683000 18053000 24631000 35953000 15583000 20369000 6730500 2469000 4261500 4166 260 4281 10923;10924;10925;10926;10927 17059;17060;17061;17062;17063 17061 5 FGNVYLAR TIDDFEIGRPLGKGKFGNVYLAREKKSHFI RPLGKGKFGNVYLAREKKSHFIVALKVLFK K F G A R E 1 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 0 8 0 938.4974 B2RC06;J3KT86;A0A0A0MSY3;V9HW16;Q5Y191;Q9UQB9;B4DXA6;Q96GD4;J3KTD6;J3QLN8;J3QR41;J3KRJ2;O14965;B4DX16;A3KFJ0;B2R6Z3;Q5QPD4;A3KFJ1 Q96GD4 88 95 AURKB;AURKC;HEL-S-90;AURKA Aurora kinase C;Aurora kinase B;Aurora kinase A no no 2 0.00076218 141.98 2 2 1.4959 1.4855 17.059 4 Median 1.0928 1.2651 7.1832 2 0 Median 1.9582 1.6835 2.1675 2 0 Median 462080000 216400000 245680000 402350000 195620000 206730000 59727000 20774000 38953000 4167 881;1967;1369 4282 10928;10929;10930;10931 17064;17065;17066;17067;17068;17069;17070;17071 17068 8 FGPALSVK GEDMDDERLKDLFGKFGPALSVKVMTDESG LKDLFGKFGPALSVKVMTDESGKSKGFGFV K F G V K V 1 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 8 0 817.46979 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;A0A024R9E2;Q5VX58;Q3ZCS4;Q9H361;Q2VIP3;H0YAP2;H0YBN4 A0A087WTT1 189 196 PABPC1;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.02421 56.014 2 1.9024 2.0784 4.1929 2 Median 1.9024 2.0784 4.1929 2 0 Median NaN NaN NaN 0 0 Median 83088000 28449000 54639000 83088000 28449000 54639000 0 0 0 4168 273 4283 10932;10933 17072;17073;17074;17075 17075 4 FGPYESYDSR SYGMDNHSGGGGGSRFGPYESYDSRSSLGG GGGSRFGPYESYDSRSSLGGRDLYRSGYGF R F G S R S 0 1 0 1 0 0 1 1 0 0 0 0 0 1 1 2 0 0 2 0 0 0 10 0 1219.5146 Q5BKZ1 Q5BKZ1 71 80 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 0.0010831 76.465 1 1.4693 1.5812 NaN 1 Median 1.4693 1.5812 NaN 1 0 Median NaN NaN NaN 0 0 Median 25751000 11178000 14573000 25751000 11178000 14573000 0 0 0 4169 1804 4284 10934 17076 17076 1 FGQGGAGPVGGQGPR TMSGSMMGSDMRTERFGQGGAGPVGGQGPR FGQGGAGPVGGQGPRGMGPGTPAGYGRGRE R F G P R G 1 1 0 0 0 2 0 7 0 0 0 0 0 1 2 0 0 0 0 1 0 0 15 0 1340.6585 Q9BSV4;Q86VG2;P23246 Q9BSV4 594 608 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.00039037 73.781 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18728000 0 18728000 18728000 0 18728000 0 0 0 4170 1510 4285 10935 17077 17077 1 FGQLTYVR SHPFVGLAFKLEVGRFGQLTYVRSYQGELK FKLEVGRFGQLTYVRSYQGELKKGDTIYNT R F G V R S 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 1 1 0 0 8 0 982.52362 C9IZ01;E5KND7;E5KND5;Q96RP9;D3DNL3;F8WAU4 C9IZ01 365 372 GFM1 Elongation factor G, mitochondrial yes no 2 0.020252 65.235 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9923100 0 9923100 9923100 0 9923100 0 0 0 4171 1126 4286 10936;10937 17078;17079 17079 2 FGQVGLCDLTQQPK LHPSETRTLVAVGAKFGQVGLCDLTQQPKE KFGQVGLCDLTQQPKEDGVYVFHPHSQPVS K F G P K E 0 0 0 1 1 3 0 2 0 0 2 1 0 1 1 0 1 0 0 1 0 0 14 0 1589.7872 A0A0C4DFX7;Q9H967 A0A0C4DFX7 272 285 WDR76 WD repeat-containing protein 76 yes no 2 0.0012966 54.7 1 2 1.0779 0.85486 49.768 3 Median 0.3873 0.38513 NaN 1 0 Median 1.1236 0.90651 8.295 2 0 Median 19262000 10463000 8798900 9596000 6463800 3132200 9666100 3999400 5666700 4172 508 4287 10938;10939;10940 17080;17081;17082;17083 17083 4 FGSEFSPELQASFQK FRLLGNVLVVVLARRFGSEFSPELQASFQK FGSEFSPELQASFQKVVTGVANALAHRYH_ R F G Q K V 1 0 0 0 0 2 2 1 0 0 1 1 0 3 1 3 0 0 0 0 0 0 15 0 1700.8046 CON__Q3SX09 CON__Q3SX09 173 187 yes yes 2 1.0073E-42 158.02 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157350000 157350000 0 119120000 119120000 0 38234000 38234000 0 + 4173 1172 4288 10941;10942;10943 17084;17085;17086;17087 17084 4 FGTEELFK KTGSMSKQELDDILKFGTEELFKDEATDGG ELDDILKFGTEELFKDEATDGGGDNKEGED K F G F K D 0 0 0 0 0 0 2 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 8 0 969.48075 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;Q659F1;Q659D0;B3KRD4;Q12873;B4DLC6 F5GWX5 1214 1221 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.001025 114.78 2 2 1.177 1.1117 31.751 4 Median 0.75373 0.84773 5.2376 2 0 Median 1.8076 1.4614 5.589 2 0 Median 220840000 123040000 97793000 202880000 116870000 86010000 17959000 6175600 11783000 4174 515;1701 4289 10944;10945;10946;10947 17088;17089;17090;17091;17092;17093 17088 6 FGTEELFKDEATDGGGDNK KTGSMSKQELDDILKFGTEELFKDEATDGG ELFKDEATDGGGDNKEGEDSSVIHYDDKAI K F G N K E 1 0 1 3 0 0 3 4 0 0 1 2 0 2 0 0 2 0 0 0 0 0 19 1 2028.8912 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1214 1232 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 1.851E-06 81.807 2 2.2391 1.9086 3.6306 2 Median NaN NaN NaN 0 0 Median 2.2391 1.9086 3.6306 2 0 Median 16224000 5345000 10879000 0 0 0 16224000 5345000 10879000 4175 515 4290 10948;10949 17094;17095;17096 17096 3 FGVCEFLNCSETTLR HKRPLVYLGLKVFSRFGVCEFLNCSETTLR FGVCEFLNCSETTLRAWFQVIEANYHSSNA R F G L R A 0 1 1 0 2 0 2 1 0 0 2 0 0 2 0 1 2 0 0 1 0 0 15 0 1831.8233 Q3ZCW6;B3KMJ9;B3KN77;O95263 Q3ZCW6 84 98 PDE8B High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8B yes no 2 0.033485 26.043 1 2.0066 2.388 NaN 1 Median 2.0066 2.388 NaN 1 0 Median NaN NaN NaN 0 0 Median 1585100000 521080000 1064000000 1585100000 521080000 1064000000 0 0 0 4176 905 4291 10950 17097 17097 1 FGVEQPEGDEDLTK KGKNICEGGEEMDNKFGVEQPEGDEDLTKE KFGVEQPEGDEDLTKEKGHGGCGRYQPRIR K F G T K E 0 0 0 2 0 1 3 2 0 0 1 1 0 1 1 0 1 0 0 1 0 0 14 0 1562.71 P24928;A0A087WWE2 P24928 164 177 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 2 0.00024871 62.408 2 1.0358 1.0652 NaN 1 Median 1.0358 1.0652 NaN 1 0 Median NaN NaN NaN 0 0 Median 16828000 4925900 11902000 16828000 4925900 11902000 0 0 0 4177 1514 4292 10951;10952 17098;17099 17099 2 FGVFNYSPFR AMQEMEVYVENIRRKFGVFNYSPFRTPYTP NIRRKFGVFNYSPFRTPYTPNSQYQMLLDP K F G F R T 0 1 1 0 0 0 0 1 0 0 0 0 0 3 1 1 0 0 1 1 0 0 10 0 1232.5978 A0A087WVZ6;A6H8Y8;A0A087WV57;Q5JV90;H7C4X9;A0A087WYS3;Q9ULU4 A0A087WVZ6 352 361 ZMYND8;DKFZp564P1772 Protein kinase C-binding protein 1 no no 2 0.00084902 80.239 2 2 0.64504 0.67773 59.877 3 Median 0.565 0.57805 22.497 2 0 Median 1.8786 1.5711 NaN 1 0 Median 30215000 14651000 15564000 23344000 13291000 10053000 6870900 1359800 5511200 4178 422;1317 4293 10953;10954;10955;10956 17100;17101;17102;17103;17104;17105;17106 17105 7 FGVPVIADGGIQNVGHIAK PQATAVYKVSEYARRFGVPVIADGGIQNVG VIADGGIQNVGHIAKALALGASTVMMGSLL R F G A K A 2 0 1 1 0 1 0 4 1 3 0 1 0 1 1 0 0 0 0 3 0 0 19 0 1891.0316 H0Y4R1;P12268 H0Y4R1 313 331 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 5.5325E-06 63.827 3 2 1.2853 1.3199 15.877 5 Median 1.2744 1.4408 5.4055 3 0 Median 1.3154 1.06 0.50234 2 0 Median 494970000 226450000 268520000 448300000 207000000 241300000 46666000 19451000 27215000 4179 1282 4294 10957;10958;10959;10960;10961 17107;17108;17109;17110;17111;17112;17113;17114 17108 8 FGVSSSSSGPSQTLTSTGNFK TSSSSSNSAASSSFKFGVSSSSSGPSQTLT SSGPSQTLTSTGNFKFGDQGGFKIGVSSDS K F G F K F 0 0 1 0 0 1 0 3 0 0 1 1 0 2 1 7 3 0 0 1 0 0 21 0 2074.9807 A0A024QZW7;P49790 A0A024QZW7 905 925 NUP153 Nuclear pore complex protein Nup153 yes no 2 0.0034825 40.941 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8217500 3749300 4468200 8217500 3749300 4468200 0 0 0 4180 31 4295 10962;10963;10964 17115;17116;17117 17115 3 FGVVANNNR VAYISLYSYFSSRGRFGVVANNNRHVKDLY FSSRGRFGVVANNNRHVKDLYLIPLSAQDP R F G N R H 1 1 3 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 9 0 989.50428 Q9BTC0 Q9BTC0 1146 1154 DIDO1 Death-inducer obliterator 1 yes yes 2 0.020704 56.011 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4181 2002 4296 10965 17118 17118 1 FGVVLDEIKPSSAPELQAVR ERDVFLYRAYLAQRKFGVVLDEIKPSSAPE DEIKPSSAPELQAVRMFADYLAHESRRVVR K F G V R M 2 1 0 1 0 1 2 1 0 1 2 1 0 1 2 2 0 0 0 3 0 0 20 1 2154.1685 M0R061;Q7Z4Z1;Q53HJ6;M0QXB4;O14579 M0R061 66 85 COPE Coatomer subunit epsilon yes no 3 2.7686E-05 46.358 1 2 1.0204 0.88171 39.734 3 Median 1.5209 1.7241 NaN 1 0 Median 1.0147 0.86686 2.4026 2 0 Median 22246000 9071100 13175000 16926000 6354500 10571000 5320500 2716600 2604000 4182 1350 4297 10966;10967;10968 17119;17120;17121 17119 3 FGYQFTQQGPR LEMAKMLEENTNILKFGYQFTQQGPRTRAA NILKFGYQFTQQGPRTRAANAITKNNDLVR K F G P R T 0 1 0 0 0 3 0 2 0 0 0 0 0 2 1 0 1 0 1 0 0 0 11 0 1327.6309 Q5HYL6;Q9NYL9;H0YKU1;H0YNJ8 Q5HYL6 318 328 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 2 0.0050483 56.916 2 2.4521 2.1705 11.877 2 Median NaN NaN NaN 0 0 Median 2.4521 2.1705 11.877 2 0 Median 4263000 1398100 2864900 0 0 0 4263000 1398100 2864900 4183 1808 4298 10969;10970 17122;17123 17123 2 FGYSVNR ______________________________ KGKTRRQKFGYSVNRKRLNRNARRKAAPRI K F G N R K 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 7 0 841.40825 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;B4E098;D6RC60;A0A087WU10 Q9Y3C1 13 19 NOP16 Nucleolar protein 16 yes no 2 0.040231 63.148 1 1 0.77274 0.66069 NaN 1 Median NaN NaN NaN 0 0 Median 0.77274 0.66069 NaN 1 0 Median 34372000 4895200 29476000 25625000 0 25625000 8746500 4895200 3851300 4184 2135 4299 10971;10972 17124;17125 17124 2 FGYVDFESAEDLEK NDLAVVDVRIGMTRKFGYVDFESAEDLEKA KFGYVDFESAEDLEKALELTGLKVFGNEIK K F G E K A 1 0 0 2 0 0 3 1 0 0 1 1 0 2 0 1 0 0 1 1 0 0 14 0 1647.7304 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 272 285 NCL Nucleolin yes no 2 4.8859E-21 142.08 2 3 1.1077 1.2737 1.9089 2 Median 1.1077 1.2737 1.9089 2 0 Median NaN NaN NaN 0 0 Median 455030000 244560000 210470000 403540000 193070000 210470000 51487000 51487000 0 4185 151 4300 10973;10974;10975;10976;10977 17126;17127;17128;17129;17130;17131;17132;17133 17129 8 FHEAQLSEK ENGNPQQMQQELQRKFHEAQLSEKISLQAI QELQRKFHEAQLSEKISLQAIQQLVRKSYQ K F H E K I 1 0 0 0 0 1 2 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1087.5298 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 729 737 NUP155 Nuclear pore complex protein Nup155 yes no 2 6.8229E-06 130.66 2 1 1.3774 1.2415 5.5969 3 Median 1.2957 1.2946 5.9245 2 0 Median 1.4555 1.214 NaN 1 0 Median 48787000 22284000 26503000 47061000 21595000 25466000 1725700 688520 1037200 4186 39 4301 10978;10979;10980 17134;17135;17136;17137;17138 17134 5 FHEQFIVR EASKQLESSRQLASRFHEQFIVREDLMGLA SRQLASRFHEQFIVREDLMGLAIGTHGANI R F H V R E 0 1 0 0 0 1 1 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 8 0 1074.5611 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29;A0A087WWR6 X5DQX7 219 226 FMR1 Fragile X mental retardation protein 1 yes no 2 0.0069807 84.916 1 1 1.288 1.1913 7.4679 2 Median 1.2181 1.2559 NaN 1 0 Median 1.362 1.13 NaN 1 0 Median 42237000 21079000 21159000 36849000 18779000 18070000 5388600 2299900 3088800 4187 1689 4302 10981;10982 17139;17140;17141 17139 3 FHFIDIYLDELSK KEVLCPESQSPNGVRFHFIDIYLDELSKVG VRFHFIDIYLDELSKVGGKELLADQNLKFI R F H S K V 0 0 0 2 0 0 1 0 1 2 2 1 0 2 0 1 0 0 1 0 0 0 13 0 1638.8294 Q14684;Q6PJM8 Q14684 166 178 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 1.859E-13 130.01 2 2.0094 1.5945 3.3265 2 Median NaN NaN NaN 0 0 Median 2.0094 1.5945 3.3265 2 0 Median 8540700 2552300 5988400 0 0 0 8540700 2552300 5988400 4188 1740 4303 10983;10984 17142;17143 17143 2 FHHTIGGSR TSAGRKSRGLGKGHKFHHTIGGSRRAAWRR LGKGHKFHHTIGGSRRAAWRRRNTLQLHRY K F H S R R 0 1 0 0 0 0 0 2 2 1 0 0 0 1 0 1 1 0 0 0 0 0 9 0 1010.5046 A0A024R2Q4;P61313;B4DLP4 A0A024R2Q4 180 188 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2;3 7.8493E-06 96.668 2 0.90879 0.96521 5.7748 2 Median 0.90879 0.96521 5.7748 2 0 Median NaN NaN NaN 0 0 Median 76423000 39427000 36996000 76423000 39427000 36996000 0 0 0 4189 121 4304 10985;10986 17144;17145;17146 17144 3 FHINQPALK PQDLDSAIMRRMPTRFHINQPALKQREAIL RRMPTRFHINQPALKQREAILKLILKNENV R F H L K Q 1 0 1 0 0 1 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 9 0 1066.5924 Q8NBU5 Q8NBU5 255 263 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 2 3.9364E-06 133.79 2 2.1269 2.3442 4.4316 2 Median 2.1269 2.3442 4.4316 2 0 Median NaN NaN NaN 0 0 Median 94875000 30575000 64300000 94875000 30575000 64300000 0 0 0 4190 1920 4305 10987;10988 17147;17148;17149 17147 3 FHNLEGFLEEFADIAK LEELFHLLNFLTPERFHNLEGFLEEFADIA HNLEGFLEEFADIAKEDQIKKLHDMLGPHM R F H A K E 2 0 1 1 0 0 3 1 1 1 2 1 0 3 0 0 0 0 0 0 0 0 16 0 1878.9152 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 917 932 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 2.455E-45 151.74 3 0.85335 0.9917 17.451 3 Plateau 0.85335 0.9917 17.451 3 0 Plateau NaN NaN NaN 0 0 Median 401930000 222490000 179440000 401930000 222490000 179440000 0 0 0 4191 515 4306 10989;10990;10991 17150;17151;17152;17153;17154 17153 4 FHPSLR LDFGQEGFTRFRERRFHPSLRSTRRFYPHT GFTRFRERRFHPSLRSTRRFYPHTHNMDGF R F H L R S 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 6 0 755.40786 P46087 P46087 559 564 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.034782 114.67 1 0.98929 1.1291 NaN 1 Median 0.98929 1.1291 NaN 1 0 Median NaN NaN NaN 0 0 Median 92727000 46833000 45894000 92727000 46833000 45894000 0 0 0 4192 1570 4307 10992 17155 17155 1 FHQFLVSETESGNISR NLSRKILRKSPHLEKFHQFLVSETESGNIS HQFLVSETESGNISRQEAVSMIPPLLLNVR K F H S R Q 0 1 1 0 0 1 2 1 1 1 1 0 0 2 0 3 1 0 0 1 0 0 16 0 1849.8959 Q08J23;A0A140T9Y7 Q08J23 145 160 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 3 9.2577E-07 90.561 2 2 1.5796 1.7657 51.639 4 Linear 1.444 1.5588 17.327 2 0 Median 0.75815 0.65168 9.7061 2 0 Median 92603000 40859000 51744000 81180000 34811000 46369000 11423000 6048300 5374400 4193 1694 4308 10993;10994;10995;10996 17156;17157;17158;17159;17160;17161 17159 6 FHSIVR LLQPQVEESVLNLGKFHSIVRLVAFCPFAS EESVLNLGKFHSIVRLVAFCPFASSQVALE K F H V R L 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 1 0 0 6 0 757.42351 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 42 47 NOP56 Nucleolar protein 56 yes no 2 2.3919E-05 155.81 2 0.88119 1.0337 13.245 2 Median 0.88119 1.0337 13.245 2 0 Median NaN NaN NaN 0 0 Median 777480000 402740000 374740000 777480000 402740000 374740000 0 0 0 4194 785 4309 10997;10998 17162;17163 17163 2 FHSPPDKDEAEAPSQK QPYSKDSPFGLSFVRFHSPPDKDEAEAPSQ HSPPDKDEAEAPSQKVTVTKLGQFRVKEED R F H Q K V 2 0 0 2 0 1 2 0 1 0 0 2 0 1 3 2 0 0 0 0 0 0 16 1 1781.822 F5H8D7;A0A024R0S8;Q59HH7;B4DTD3;P18887;B2RCY5;B4DEB2;M0QZ96;M0R0D2;M0R1U8;M0QYS5 F5H8D7 118 133 XRCC1 DNA repair protein XRCC1 yes no 3 0.0033227 50.053 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4195 58 4310 10999 17164 17164 1 FHVEEEGK VVMRVDFNVPMKNLRFHVEEEGKGKDASGN VPMKNLRFHVEEEGKGKDASGNKVKAEPAK R F H G K G 0 0 0 0 0 0 3 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 8 0 973.45051 B4E1H9;V9HWF4;P00558;V9HW85;A0A140VJR3;P07205 B4E1H9 34 41 HEL-S-68p;PGK1;HEL-S-272;PGK2 Phosphoglycerate kinase;Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 2 0.038159 58.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4196 1067 4311 11000 17165 17165 1 FIAQLQTSIR FYQLQPAMTQQIYDKFIAQLQTSIREEISD QIYDKFIAQLQTSIREEISDIKEEGNLEAV K F I I R E 1 1 0 0 0 2 0 0 0 2 1 0 0 1 0 1 1 0 0 0 0 0 10 0 1175.6663 U3KQ54;Q6P1K2;D3DVB3 U3KQ54 80 89 PMF1-BGLAP;PMF1;hCG_1999356 Polyamine-modulated factor 1 yes no 2 0.018174 55.549 2 1.6215 1.6623 12.459 2 Median 1.6215 1.6623 12.459 2 0 Median NaN NaN NaN 0 0 Median 30304000 11937000 18367000 30304000 11937000 18367000 0 0 0 4197 1852 4312 11001;11002 17166;17167 17166 2 FIASTGMDR HSGLTTGVAFGHHAKFIASTGMDRSLKFYS FGHHAKFIASTGMDRSLKFYSL________ K F I D R S 1 1 0 1 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 0 9 0 996.46987 Q9UMS4;H0YGZ5 Q9UMS4 489 497 PRPF19 Pre-mRNA-processing factor 19 yes no 2 0.0013859 73.26 2 1.6692 1.7606 8.3937 2 Median 1.6692 1.7606 8.3937 2 0 Median NaN NaN NaN 0 0 Median 60328000 22953000 37374000 60328000 22953000 37374000 0 0 0 4198 2114 4313 11003;11004 17168;17169;17170 17170 1939 3 FIAVGYVDDTQFVR YFTTSVSRPGRGEPRFIAVGYVDDTQFVRF RFIAVGYVDDTQFVRFDSDAASQRMEPRAP R F I V R F 1 1 0 2 0 1 0 1 0 1 0 0 0 2 0 0 1 0 1 3 0 0 14 0 1628.8199 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U3N9E1 21 34 HLA-A;HLA-C;HLA;HLA-Cw;HLA-A*31;MHC class I HLA-A;HLA-A*0226;HLA-A*33;HLA-A*02;HLA-DQB1;HLA-B;HLA-A2;HLC-C;HLA-B*5501 variant;HLA-CW;HLA-A*0225;HLA A;HLA-A24AK;HLAC;HLA-A*03;HLA-A*24;HLA-B52;HLA-B*35JAC;Cw*03;B*15;B*35;HLA-A*29;HLA-A null;HLA-B15;HLA-B1501V2;HLA-B*3531;HLA-B*35SRE;HLA-B52v;HLA-B*5603;HLA-B*;HLA-B*1522;HLA-B*5101 variant;HLA-B*15IL;HLA-B*15UL;HLA-B*15MD;HLA-B*51IM;HLA-All;HLA-DRB1;HLA-B*58;HLA-A*2410;HLA-B51;HLA-A26;B*56;B-3501;HLA-Bw62.4;HLA-Bw62.1;HLA-Bw62.5;HLA-Bw62.3;HLA-B57;HLA-B*1513;HLA-B35;HLA-B*3512;HLA-A*01 HLA class I histocompatibility antigen, A-29 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, B-59 alpha chain;HLA class I histocompatibility antigen, B-55 alpha chain;HLA class I histocompatibility antigen, B-54 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-43 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-26 alpha chain;HLA class I histocompatibility antigen, A-23 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-24 alpha chain;HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain;HLA class I histocompatibility antigen, B-35 alpha chain;HLA class I histocompatibility antigen, B-78 alpha chain;HLA class I histocompatibility antigen, B-56 alpha chain;HLA class I histocompatibility antigen, B-53 alpha chain;HLA class I histocompatibility antigen, B-52 alpha chain;HLA class I histocompatibility antigen, B-46 alpha chain;HLA class I histocompatibility antigen, B-15 alpha chain;HLA class I histocompatibility antigen, B-57 alpha chain;HLA class I histocompatibility antigen, B-51 alpha chain;HLA class I histocompatibility antigen, B-58 alpha chain no no 2 2.4322E-06 91.855 1 0.91642 0.93346 NaN 1 Median 0.91642 0.93346 NaN 1 0 Median NaN NaN NaN 0 0 Median 14832000 7658900 7173200 14832000 7658900 7173200 0 0 0 4199 395 4314 11005 17171 17171 0 FIAYQFTDTPLQIK KIGEERATAISLMRKFIAYQFTDTPLQIKS KFIAYQFTDTPLQIKSVVAPEHVKGYIYVE K F I I K S 1 0 0 1 0 2 0 0 0 2 1 1 0 2 1 0 2 0 1 0 0 0 14 0 1683.8872 B4E0Q4;B4DZJ7;O00267 B4E0Q4 59 72 SUPT5H Transcription elongation factor SPT5 yes no 2 0.00020357 85.958 2 1 1.6532 1.5442 11.932 3 Median 1.67 1.682 12.088 2 0 Median 1.6532 1.4561 NaN 1 0 Median 14101000 5035900 9065500 12871000 4653600 8217800 1230000 382330 847720 4200 1056 4315 11006;11007;11008 17172;17173;17174;17175;17176;17177;17178 17172 7 FICTTSAIQNR AKAISEQTGKELLYKFICTTSAIQNRFKYA LLYKFICTTSAIQNRFKYARVTPDTDWARL K F I N R F 1 1 1 0 1 1 0 0 0 2 0 0 0 1 0 1 2 0 0 0 0 0 11 0 1309.6449 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;K7ESG8 A0A024R1Y2 18 28 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.0053025 64.711 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4201 89 4316 11009;11010 17179;17180 17180 2 FIDPFCK SKVGGKELLADQNLKFIDPFCKIAAKTKDH LLADQNLKFIDPFCKIAAKTKDHTLVQTIA K F I C K I 0 0 0 1 1 0 0 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 7 0 925.43677 Q14684;Q6PJM8 Q14684 192 198 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 0.030596 68.485 1 1 1.3502 1.2364 20.92 2 Median 1.0305 1.0664 NaN 1 0 Median 1.769 1.4336 NaN 1 0 Median 21235000 11262000 9973400 18618000 10386000 8232000 2617100 875690 1741400 4202 1740 4317 11011;11012 17181;17182;17183 17181 3 FIDPFCR TKVGAEELTADQNLKFIDPFCRIAARTKDS LTADQNLKFIDPFCRIAARTKDSLVLNNIT K F I C R I 0 1 0 1 1 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 7 0 953.44292 Q6PJJ2;P56182;B4DZM3;Q96J73 Q6PJJ2 198 204 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 0.0099039 113.25 2 1 0.87757 0.97852 5.4368 3 Median 0.85576 0.95081 7.3224 2 0 Median 1.1756 0.97852 NaN 1 0 Median 149630000 82022000 67603000 142440000 78459000 63976000 7190600 3563500 3627100 4203 1618 4318 11013;11014;11015 17184;17185;17186;17187;17188 17185 5 FIEGISEK VDCCKTLDQAKAVLKFIEGISEKTLRSTVA QAKAVLKFIEGISEKTLRSTVALTAARGRG K F I E K T 0 0 0 0 0 0 2 1 0 2 0 1 0 1 0 1 0 0 0 0 0 0 8 0 921.48075 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 267 274 NAT10 N-acetyltransferase 10 no no 2 0.0065453 86.794 3 2 1.1461 1.1163 3.416 4 Median 0.9329 1.0879 1.8178 2 0 Median 1.4002 1.1468 1.9817 2 0 Median 650820000 287600000 363220000 590420000 263530000 326890000 60401000 24070000 36331000 4204 2023;1687 4319 11016;11017;11018;11019;11020 17189;17190;17191;17192;17193;17194;17195 17192 7 FIEIAAR KLNTLLQRAPQCLGKFIEIAARKKRNFILD RAPQCLGKFIEIAARKKRNFILDQTNVSAA K F I A R K 2 1 0 0 0 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7 0 818.46504 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 525 531 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.026941 83.287 2 1.0087 1.1836 29.188 2 Median 1.0087 1.1836 29.188 2 0 Median NaN NaN NaN 0 0 Median 761660000 355580000 406090000 761660000 355580000 406090000 0 0 0 4205 999 4320 11021;11022 17196;17197;17198 17196 3 FIFNGEFK LIKSPKGKEVEDGDKFIFNGEFKHKLFRIK EVEDGDKFIFNGEFKHKLFRIKINQIQMKE K F I F K H 0 0 1 0 0 0 1 1 0 1 0 1 0 3 0 0 0 0 0 0 0 0 8 0 1000.5018 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 654 661 CUL4A Cullin-4A yes no 2 0.0062953 87.754 2 2 0.83107 0.91005 19.163 3 Plateau 0.83107 0.91005 NaN 1 0 Median 0.81421 0.65519 3.8291 2 0 Median 96837000 32743000 64094000 86145000 26979000 59165000 10693000 5764000 4928800 4206 1718 4321 11023;11024;11025;11026 17199;17200;17201;17202;17203 17199 5 FIIENTDLAVANSIR QPTVRITELTDENVKFIIENTDLAVANSIR FIIENTDLAVANSIRRVFIAEVPIIAIDWV K F I I R R 2 1 2 1 0 0 1 0 0 3 1 0 0 1 0 1 1 0 0 1 0 0 15 0 1674.8941 B7Z377;Q6FGR6;B7Z6D1;P19387;H3BRR2 B7Z377 21 35 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes no 2 4.6388E-10 113.22 2 1.1314 1.1446 12.69 2 Median 1.1314 1.1446 12.69 2 0 Median NaN NaN NaN 0 0 Median 17421000 8760400 8660400 17421000 8760400 8660400 0 0 0 4207 1087 4322 11027;11028 17204;17205;17206 17206 3 FIIHAPPGEFNEVFNDVR EEQLSDEEKVRMAAKFIIHAPPGEFNEVFN HAPPGEFNEVFNDVRLLLNNDNLLREGAAH K F I V R L 1 1 2 1 0 0 2 1 1 2 0 0 0 3 2 0 0 0 0 2 0 0 18 0 2100.0429 Q53GE2;Q53GC7;A4D0V4;P47755;C9JUG7;F8W9N7;A0A0D9SET8 Q53GE2 20 37 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 3 0.011625 22.646 1 0.95305 0.94708 NaN 1 Median 0.95305 0.94708 NaN 1 0 Median NaN NaN NaN 0 0 Median 7446900 4569900 2877000 7446900 4569900 2877000 0 0 0 4208 659 4323 11029 17207 17207 1 FILNLPTFSVR AVELLRKCLEELQKRFILNLPTFSVRIIDK LQKRFILNLPTFSVRIIDKNGIHDLDNISF R F I V R I 0 1 1 0 0 0 0 0 0 1 2 0 0 2 1 1 1 0 0 1 0 0 11 0 1305.7445 A0A087WVV1;B7Z478;A0A140VJS6;P49721 A0A087WVV1 54 64 PSMB2 Proteasome subunit beta type-2 yes no 2 0.00019135 93.178 2 2.301 2.3192 1.8613 2 Median 2.301 2.3192 1.8613 2 0 Median NaN NaN NaN 0 0 Median 16153000 5071100 11082000 16153000 5071100 11082000 0 0 0 4209 421 4324 11030;11031 17208;17209;17210;17211 17208 4 FILPVNEGK LKEKMKIERAHMRLRFILPVNEGKKLKEKL AHMRLRFILPVNEGKKLKEKLKPLIKVIES R F I G K K 0 0 1 0 0 0 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 9 0 1015.5702 A0A0S2Z5I7;A0A087X020;Q9Y3A5 A0A0S2Z5I7 176 184 SBDS Ribosome maturation protein SBDS yes no 2 0.0095602 60.074 1 4.2233 4.2402 NaN 1 Median 4.2233 4.2402 NaN 1 0 Median NaN NaN NaN 0 0 Median 6952800 1936800 5016100 6952800 1936800 5016100 0 0 0 4210 442 4325 11032 17212 17212 1 FILSLASCK RTEAHQDVVGRFNERFILSLASCKKCLVID GRFNERFILSLASCKKCLVIDDQLNILPIS R F I C K K 1 0 0 0 1 0 0 0 0 1 2 1 0 1 0 2 0 0 0 0 0 0 9 0 1037.558 Q05CW7;E9PMU0;Q9H0A0;A0A087WV29 Q9H0A0 187 195 NAT10 N-acetyltransferase 10 no no 2 0.0018938 79.474 2 2 1.1048 1.0452 6.6804 4 Median 0.88991 0.98813 8.6179 2 0 Median 1.3261 1.0615 2.8794 2 0 Median 175210000 83811000 91398000 136170000 67823000 68346000 39040000 15988000 23052000 4211 2023;1687 4326 11033;11034;11035;11036 17213;17214;17215;17216;17217;17218;17219 17215 7 FIMESGAK LGGLAVRRACYGVLRFIMESGAKGCEVVVS ACYGVLRFIMESGAKGCEVVVSGKLRGQRA R F I A K G 1 0 0 0 0 0 1 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 8 0 881.43169 P23396;Q53G83;E9PL09;H0YEU2;A7E2S3;Q9NQS8 P23396 125 132 RPS3 40S ribosomal protein S3 yes no 2 0.010868 57.177 1 1.7058 1.77 NaN 1 Median 1.7058 1.77 NaN 1 0 Median NaN NaN NaN 0 0 Median 29441000 10181000 19260000 29441000 10181000 19260000 0 0 0 4212 1511 4327 11037 17220 17220 1280 1 FINEDRLPHLLLYGPPGTGK NDLISHQDILSTIQKFINEDRLPHLLLYGP RLPHLLLYGPPGTGKTSTILACAKQLYKDK K F I G K T 0 1 1 1 0 0 1 3 1 1 4 1 0 1 3 0 1 0 1 0 0 0 20 1 2236.2004 Q6LES9;A8K3S0;Q59GW7;P40937;C9JH72;F5H304;F5H0U6 Q6LES9 47 66 RFC5 Replication factor C subunit 5 yes no 4 0.058284 7.6872 1 0.9107 0.7841 NaN 1 Median NaN NaN NaN 0 0 Median 0.9107 0.7841 NaN 1 0 Median 1881700 835610 1046100 0 0 0 1881700 835610 1046100 4213 726 4328 11038 17221 17221 1 FINHLCDPNIIPVR EVYCIDARYYGNISRFINHLCDPNIIPVRV RFINHLCDPNIIPVRVFMLHQDLRFPRIAF R F I V R V 0 1 2 1 1 0 0 0 1 3 1 0 0 1 2 0 0 0 0 1 0 0 14 0 1706.8926 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 Q59FM7 931 944 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 3 0.028565 24.558 1 1 1.5496 1.3601 NaN 1 Median NaN NaN NaN 0 0 Median 1.5496 1.3601 NaN 1 0 Median 5318900 4376800 942130 3577400 3577400 0 1741500 799350 942130 4214 364 4329 11039;11040 17222;17223 17222 2 FINHSCEPNCYSR DSEVVDATMHGNAARFINHSCEPNCYSRVI ARFINHSCEPNCYSRVINIDGQKHIVIFAM R F I S R V 0 1 2 0 2 0 1 0 1 1 0 0 0 1 1 2 0 0 1 0 0 0 13 0 1682.693 Q03164;B4DIJ7 Q03164 3904 3916 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180;Histone-lysine N-methyltransferase yes no 3 0.019836 24.929 1 1.9362 1.6458 NaN 1 Median NaN NaN NaN 0 0 Median 1.9362 1.6458 NaN 1 0 Median 2867000 986460 1880600 0 0 0 2867000 986460 1880600 4215 1680 4330 11041 17224 17224 1 FINLQPSTLTDK KTLIAKATAKEAGCRFINLQPSTLTDKWYG GCRFINLQPSTLTDKWYGESQKLAAAVFSL R F I D K W 0 0 1 1 0 1 0 0 0 1 2 1 0 1 1 1 2 0 0 0 0 0 12 0 1375.7347 Q8NBU5;B4E2J1 Q8NBU5 154 165 ATAD1 ATPase family AAA domain-containing protein 1 yes no 2 8.9303E-05 92.538 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22858000 0 22858000 21147000 0 21147000 1710800 0 1710800 4216 1920 4331 11042;11043;11044;11045;11046 17225;17226;17227;17228;17229;17230 17229 6 FINNEYYPADLQVAPTQDLR RVEPRSRELSPLFLRFINNEYYPADLQVAP YYPADLQVAPTQDLRRKGKGMVAEEIEEEP R F I L R R 2 1 2 2 0 2 1 0 0 1 2 0 0 1 2 0 1 0 2 1 0 0 20 0 2366.1543 O75691 O75691 849 868 UTP20 Small subunit processome component 20 homolog yes yes 2 2.1974E-06 68.809 2 2 1.455 1.3103 4.9422 4 Median 1.2906 1.3512 7.942 2 0 Median 1.601 1.3103 0.88079 2 0 Median 71923000 27834000 44088000 44321000 17579000 26742000 27602000 10256000 17346000 4217 1412 4332 11047;11048;11049;11050 17231;17232;17233;17234;17235;17236;17237;17238 17234 8 FIPDDITFDDEPK DGLEFESSCSFIDLRFIPDDITFDDEPKDV LRFIPDDITFDDEPKDVASEVNLTAYKPKY R F I P K D 0 0 0 4 0 0 1 0 0 2 0 1 0 2 2 0 1 0 0 0 0 0 13 0 1550.7141 Q9H501;A0JLU5;Q05C10;A0A087WX71 Q9H501 469 481 ESF1 ESF1 homolog yes no 2 0.00013091 79.659 2 2 1.3445 1.2165 5.1391 4 Median 1.1472 1.1774 2.9691 2 0 Median 1.5678 1.2669 4.0894 2 0 Median 60845000 28144000 32701000 46225000 22851000 23374000 14620000 5293200 9327200 4218 2033 4333 11051;11052;11053;11054 17239;17240;17241;17242;17243;17244 17240 6 FIPEITISDILR YKACFLGATVKYLQKFIPEITISDILRQVA LQKFIPEITISDILRQVAVRGPSWLWQQPM K F I L R Q 0 1 0 1 0 0 1 0 0 4 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1415.8024 C9JVN9;A8K9B2;Q9H9P8 C9JVN9 388 399 L2HGDH L-2-hydroxyglutarate dehydrogenase, mitochondrial yes no 2 0.0043643 53.683 2 1.6975 1.7118 NaN 1 Median 1.6975 1.7118 NaN 1 0 Median NaN NaN NaN 0 0 Median 6247100 2217300 4029800 6247100 2217300 4029800 0 0 0 4219 783 4334 11055;11056 17245;17246 17246 2 FIQPNIGELPTALK KEGLDEVAGIINDAKFIQPNIGELPTALKG KFIQPNIGELPTALKGRLNDSNKILVQQTL K F I L K G 1 0 1 0 0 1 1 1 0 2 2 1 0 1 2 0 1 0 0 0 0 0 14 0 1539.8661 Q14008 Q14008 893 906 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.023159 33.057 2 1.6143 1.2732 13.85 2 Median NaN NaN NaN 0 0 Median 1.6143 1.2732 13.85 2 0 Median 6409900 2645800 3764100 0 0 0 6409900 2645800 3764100 4220 1725 4335 11057;11058 17247;17248 17247 2 FIQTFGK LGDPKAPGLGAFRRKFIQTFGKEFDKHFGK GLGAFRRKFIQTFGKEFDKHFGKGGSKLLR K F I G K E 0 0 0 0 0 1 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 0 7 0 839.45414 P78527 P78527 3632 3638 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.037563 60.788 2 0.39788 0.31681 4.0083 2 Median NaN NaN NaN 0 0 Median 0.39788 0.31681 4.0083 2 0 Median 6799800 4650200 2149600 0 0 0 6799800 4650200 2149600 4221 1665 4336 11059;11060 17249;17250 17249 2 FISHQDIR RGSLDESSLGFGYPKFISHQDIRKRNYVRD LGFGYPKFISHQDIRKRNYVRDDAVFIRAA K F I I R K 0 1 0 1 0 1 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 0 8 0 1014.5247 A0A024QZ59;Q9BUZ4;A0A024QZ19;Q2KJU6;Q2KJU5;Q2KJU3;A0A0C4DFM9 A0A024QZ59 439 446 TRAF4 TNF receptor-associated factor 4 yes no 3 0.015449 49.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2712000 2712000 0 2712000 2712000 0 0 0 0 4222 11 4337 11061 17251 17251 1 FITDNTVEER RAHRIGQTKTVRVFRFITDNTVEERIVERA VRVFRFITDNTVEERIVERAEMKLRLDSIV R F I E R I 0 1 1 1 0 0 2 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1222.583 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 607 616 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.0331E-09 133.57 2 2 3.5685 3.6238 22.675 4 Median 2.4778 2.9036 12.485 2 0 Median 4.8622 4.2105 2.3726 2 0 Median 694040000 194290000 499750000 612760000 181250000 431510000 81273000 13033000 68241000 4223 1391 4338 11062;11063;11064;11065 17252;17253;17254;17255;17256;17257;17258 17252 7 FITHAPPGEFNEVFNDVR DDRVSDEEKVRIAAKFITHAPPGEFNEVFN HAPPGEFNEVFNDVRLLLNNDNLLRDGAAH K F I V R L 1 1 2 1 0 0 2 1 1 1 0 0 0 3 2 0 1 0 0 2 0 0 18 0 2088.0065 A8K0T9;A0A024R0E5;P52907 A8K0T9 20 37 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 3 2.6026E-05 49.463 1 0.92834 1.0378 NaN 1 Median 0.92834 1.0378 NaN 1 0 Median NaN NaN NaN 0 0 Median 44611000 21534000 23077000 44611000 21534000 23077000 0 0 0 4224 43 4339 11066 17259 17259 1 FITYPFDQNR VKYCNSLPDIPFDPKFITYPFDQNRFVQYK PFDPKFITYPFDQNRFVQYKATSLEKQHKH K F I N R F 0 1 1 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 10 0 1299.6248 A0A024R0H6;Q8N7H5 A0A024R0H6 48 57 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0010045 77.732 1 1.5912 1.8422 NaN 1 Median 1.5912 1.8422 NaN 1 0 Median NaN NaN NaN 0 0 Median 67333000 15991000 51342000 67333000 15991000 51342000 0 0 0 4225 46 4340 11067 17260 17260 1 FKDPNAPK EMKTYIPPKGETKKKFKDPNAPKRPPSAFF KGETKKKFKDPNAPKRPPSAFFLFCSEYRP K F K P K R 1 0 1 1 0 0 0 0 0 0 0 2 0 1 2 0 0 0 0 0 0 0 8 1 915.48142 Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;B2RPK0;P09429;B3KQ05;D3DQY9;Q53TD0;P23497 Q5T7C4 89 96 HMGB1;HMGB1P1;hCG_1991922;SP100 Putative high mobility group protein B1-like 1;High mobility group protein B1;Nuclear autoantigen Sp-100 yes no 2 1.5691E-08 143.11 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7977500 7977500 0 7977500 7977500 0 0 0 0 4226 392 4341 11068 17261 17261 1 FLAAGTHLGGTNLDFQMEQYIYK GALDVLQMKEEDVLKFLAAGTHLGGTNLDF GGTNLDFQMEQYIYKRKSDGIYIINLKRTW K F L Y K R 2 0 1 1 0 2 1 3 1 1 3 1 1 2 0 0 2 0 2 0 0 0 23 0 2616.2683 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;Q96RS2;F8WD59 C9J9K3 18 40 RPSA;LOC388524 40S ribosomal protein SA yes no 3 7.6413E-17 102.67 2 2.4002 2.7405 1.0954 2 Median 2.4002 2.7405 1.0954 2 0 Median NaN NaN NaN 0 0 Median 268160000 85733000 182420000 268160000 85733000 182420000 0 0 0 4227 119 4342 11069;11070 17262;17263;17264 17264 102 3 FLANVSTVLTSK LPSDFTPAVHASLDKFLANVSTVLTSKYR_ LDKFLANVSTVLTSKYR_____________ K F L S K Y 1 0 1 0 0 0 0 0 0 0 2 1 0 1 0 2 2 0 0 2 0 0 12 0 1278.7184 CON__P01966 CON__P01966 129 140 yes yes 2 0.0012951 79.693 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65502000 65502000 0 53852000 53852000 0 11650000 11650000 0 + 4228 1149 4343 11071;11072;11073;11074 17265;17266;17267;17268 17265 4 FLAQGTMEDK RVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ VYVYRFLAQGTMEDKIYDRQVTKQSLSFRV R F L D K I 1 0 0 1 0 1 1 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 10 0 1138.5329 A4LAA3;P46100;B4DHH8;B4DLE1 A4LAA3 2165 2174 ATRX Transcriptional regulator ATRX yes no 2 0.00070512 73.573 2 1.1461 1.1975 13.385 2 Median 1.1461 1.1975 13.385 2 0 Median NaN NaN NaN 0 0 Median 34335000 16920000 17415000 34335000 16920000 17415000 0 0 0 4229 672 4344 11075;11076 17269;17270;17271;17272 17270 522 4 FLASDLDQK TKKTKKHLPEPVAIKFLASDLDQKMKSISL EPVAIKFLASDLDQKMKSISLASCHQLHSK K F L Q K M 1 0 0 2 0 1 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1035.5237 O75691;B4DN27 O75691 2520 2528 UTP20 Small subunit processome component 20 homolog yes no 2 0.0074668 61.962 2 1 1.4365 1.5483 9.2421 3 Plateau 1.4336 1.5468 0.13809 2 0 Median 1.6622 1.318 NaN 1 0 Median 75991000 31929000 44061000 71653000 30374000 41279000 4337400 1555500 2782000 4230 1412 4345 11077;11078;11079 17273;17274;17275;17276;17277 17274 5 FLASSGHDQR TGEPVEELALSHCGRFLASSGHDQRLKFWD SHCGRFLASSGHDQRLKFWDMAQLRAVVVD R F L Q R L 1 1 0 1 0 1 0 1 1 0 1 0 0 1 0 2 0 0 0 0 0 0 10 0 1116.5312 Q9H6Y2;G3V1J0 Q9H6Y2 309 318 WDR55 WD repeat-containing protein 55 yes no 2 0.0035438 64.04 1 0.79057 0.66082 NaN 1 Median NaN NaN NaN 0 0 Median 0.79057 0.66082 NaN 1 0 Median 3495100 1800100 1695000 0 0 0 3495100 1800100 1695000 4231 2039 4346 11080 17278 17278 1 FLAVGLVDNTVR CMSLANVPPGEQRSRFLAVGLVDNTVRIIS RSRFLAVGLVDNTVRIISLDPSDCLQPLSM R F L V R I 1 1 1 1 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 3 0 0 12 0 1302.7296 A8K6V3;Q15393;B3KQH1 A8K6V3 604 615 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.00014575 93.111 2 2 1.3321 1.3894 32.704 3 Plateau 1.3224 1.3894 0.0058969 2 0 Median 0.94323 0.78856 NaN 1 0 Median 63016000 27239000 35777000 57803000 23877000 33926000 5212400 3362100 1850200 4232 764 4347 11081;11082;11083;11084 17279;17280;17281;17282;17283;17284;17285;17286;17287 17280 9 FLCIFLEK LNSIEFRECREEILKFLCIFLEKMGQKIAP CREEILKFLCIFLEKMGQKIAPYSVEIKNT K F L E K M 0 0 0 0 1 0 1 0 0 1 2 1 0 2 0 0 0 0 0 0 0 0 8 0 1068.5678 P78527;B4DL41 P78527 88 95 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.013893 64.265 2 2 0.4109 0.37016 54.601 4 Median 0.59925 0.61201 13.02 2 0 Median 0.29272 0.23999 3.1926 2 0 Median 22615000 14987000 7628100 18440000 11809000 6631000 4174800 3177800 997040 4233 1665 4348 11085;11086;11087;11088 17288;17289;17290;17291;17292 17288 5 FLDDLGNAK SLKLATRIIDEVVNKFLDDLGNAKSHLMSL DEVVNKFLDDLGNAKSHLMSLYSACSSEVP K F L A K S 1 0 1 2 0 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 991.49746 B3KN59;B3KM36;O95816 B3KN59 124 132 BAG2 BAG family molecular chaperone regulator 2 yes no 2 0.001077 90.308 2 1 1.3599 1.4835 29.533 3 Median 1.4261 1.5678 7.8176 2 0 Median 1.1634 0.94858 NaN 1 0 Median 98835000 37031000 61804000 96949000 36154000 60795000 1886400 877620 1008800 4234 900 4349 11089;11090;11091 17293;17294;17295;17296;17297 17293 5 FLDGIYVSEK LIQQATTVKNKDIRKFLDGIYVSEKGTVQQ KDIRKFLDGIYVSEKGTVQQADE_______ K F L E K G 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 1 0 0 1 1 0 0 10 0 1169.5968 Q53Z07;P32969;D6RAN4;H0Y9V9;Q2NKY6;H0Y9R4 Q53Z07 175 184 RPL9 60S ribosomal protein L9 yes no 2 0.00027596 91.584 2 2 0.942 1.115 3.8897 2 Median 0.942 1.115 3.8897 2 0 Median NaN NaN NaN 0 0 Median 1251000000 619500000 631470000 1202100000 615520000 586590000 48867000 3982300 44885000 4235 1537 4350 11092;11093;11094;11095 17298;17299;17300;17301;17302;17303;17304;17305;17306 17301 9 FLDGNELTLADCNLLPK VDETSAEDEGVSQRKFLDGNELTLADCNLL DGNELTLADCNLLPKLHIVQVVCKKYRGFT K F L P K L 1 0 2 2 1 0 1 1 0 0 5 1 0 1 1 0 1 0 0 0 0 0 17 0 1931.9663 Q5SRT3;Q53FB0;O00299 Q5SRT3 167 183 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 0.00081079 45.257 1 3.0447 3.0329 NaN 1 Median 3.0447 3.0329 NaN 1 0 Median NaN NaN NaN 0 0 Median 18988000 4320100 14668000 18988000 4320100 14668000 0 0 0 4236 1362 4351 11096 17307;17308 17308 2 FLDQNLQK RLARDANSENCNKNKFLDQNLQKYQAECSQ ENCNKNKFLDQNLQKYQAECSQFKAKLASL K F L Q K Y 0 0 1 1 0 2 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5291 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 1057 1064 DSP;DSP variant protein Desmoplakin yes no 2 0.014311 63.301 1 0.53074 0.54565 NaN 1 Median 0.53074 0.54565 NaN 1 0 Median NaN NaN NaN 0 0 Median 17929000 12090000 5839300 17929000 12090000 5839300 0 0 0 4237 1486 4352 11097 17309 17309 1 FLDQSLGEQVVK MKSISLASCHQLHSKFLDQSLGEQVVKNLL HSKFLDQSLGEQVVKNLLFAAKVLYLLELY K F L V K N 0 0 0 1 0 2 1 1 0 0 2 1 0 1 0 1 0 0 0 2 0 0 12 0 1361.7191 O75691;B4DN27 O75691 2544 2555 UTP20 Small subunit processome component 20 homolog yes no 2 0.00020697 84.882 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4238 1412 4353 11098 17310 17310 1 FLDVENELSR IGDNVAKVNDSWKERFLDVENELSRIRSEK SWKERFLDVENELSRIRSEKASIEHEALYL R F L S R I 0 1 1 1 0 0 2 0 0 0 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1220.6037 P49454 P49454 1993 2002 CENPF Centromere protein F yes yes 2 0.016753 65.305 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13516000 13516000 0 13516000 13516000 0 0 0 0 4239 1581 4354 11099 17311 17311 1 FLEDGPCQQAAQVLIR GLSELRSELYFLIARFLEDGPCQQAAQVLI LEDGPCQQAAQVLIREVAEKELLPRRTDWT R F L I R E 2 1 0 1 1 3 1 1 0 1 2 0 0 1 1 0 0 0 0 1 0 0 16 0 1843.9251 Q8WWQ0 Q8WWQ0 22 37 PHIP PH-interacting protein yes yes 2 1.7671E-26 154.35 2 2 1.3765 1.1585 25.985 3 Median 0.67125 0.76928 NaN 1 0 Median 1.402 1.2013 5.1264 2 0 Median 173700000 112740000 60952000 119020000 90751000 28272000 54674000 21994000 32680000 4240 1942 4355 11100;11101;11102;11103 17312;17313;17314;17315;17316;17317;17318;17319;17320 17312 9 FLEEFITPIVK INFIHHNWPSLLRHRFLEEFITPIVKVSKN LRHRFLEEFITPIVKVSKNKQEMAFYSLPE R F L V K V 0 0 0 0 0 0 2 0 0 2 1 1 0 2 1 0 1 0 0 1 0 0 11 0 1334.7486 P11388 P11388 569 579 TOP2A DNA topoisomerase 2-alpha yes yes 2 5.9987E-17 157.96 47 9 0.82131 0.92022 22.989 28 Median 0.77736 0.87571 14.638 20 0 Median 1.3411 1.1698 14.347 8 0 Median 2628100000 1392600000 1235500000 1962200000 1110000000 852230000 665880000 282570000 383310000 4241 1471 4356 11104;11105;11106;11107;11108;11109;11110;11111;11112;11113;11114;11115;11116;11117;11118;11119;11120;11121;11122;11123;11124;11125;11126;11127;11128;11129;11130;11131;11132;11133;11134;11135;11136;11137;11138;11139;11140;11141;11142;11143;11144;11145;11146;11147;11148;11149;11150;11151;11152;11153;11154;11155;11156;11157;11158;11159 17321;17322;17323;17324;17325;17326;17327;17328;17329;17330;17331;17332;17333;17334;17335;17336;17337;17338;17339;17340;17341;17342;17343;17344;17345;17346;17347;17348;17349;17350;17351;17352;17353;17354;17355;17356;17357;17358;17359;17360;17361;17362;17363;17364;17365;17366;17367;17368;17369;17370;17371;17372;17373;17374;17375;17376;17377;17378;17379;17380;17381;17382;17383;17384;17385;17386;17387;17388;17389;17390;17391;17392;17393;17394;17395;17396;17397;17398;17399;17400;17401;17402;17403;17404;17405;17406;17407;17408;17409;17410;17411;17412 17361 90 FLEEGNLEEAEIQK SLLPPTDTRFRPDQRFLEEGNLEEAEIQKQ RFLEEGNLEEAEIQKQRIEQLQRERRRVLE R F L Q K Q 1 0 1 0 0 1 5 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 14 0 1647.7992 Q9H4L5 Q9H4L5 816 829 OSBPL3 Oxysterol-binding protein-related protein 3 yes yes 2 0.0023096 77.64 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4573800 4573800 0 4573800 4573800 0 0 0 0 4242 2032 4357 11160;11161 17413;17414 17413 2 FLEETNCLYAAEGQR MLSDLQVYKDSFELKFLEETNCLYAAEGQR FLEETNCLYAAEGQRLMQEREVPEYLNHVS K F L Q R L 2 1 1 0 1 1 3 1 0 0 2 0 0 1 0 0 1 0 1 0 0 0 15 0 1799.8148 Q13619;A0A0A0MR50;B2RBV7 Q13619 235 249 CUL4A Cullin-4A yes no 2 2.1981E-09 118.48 3 2 0.80827 0.74186 7.7699 4 Median 0.69327 0.68619 9.2911 2 0 Median 0.89427 0.75602 0.93488 2 0 Median 35437000 18882000 16555000 22873000 12317000 10556000 12564000 6565000 5999200 4243 1718 4358 11162;11163;11164;11165;11166 17415;17416;17417;17418;17419;17420;17421;17422;17423 17416 9 FLEFQYLTGGLVDPEVHGR EAVKEKWLPYEAGQRFLEFQYLTGGLVDPE QYLTGGLVDPEVHGRISTEEAIRKGFIDGR R F L G R I 0 1 0 1 0 1 2 3 1 0 3 0 0 2 1 0 1 0 1 2 0 0 19 0 2176.0953 P15924;Q4LE79;B4E2A0 P15924 2726 2744 DSP;DSP variant protein Desmoplakin yes no 3 0.00071585 66.777 2 0.82764 0.82964 NaN 1 Median 0.82764 0.82964 NaN 1 0 Median NaN NaN NaN 0 0 Median 13508000 8858000 4649800 13508000 8858000 4649800 0 0 0 4244 1486 4359 11167;11168 17424;17425 17425 2 FLEGTSCIAGVFVDATK EGLTSIEEVTKNLQKFLEGTSCIAGVFVDA EGTSCIAGVFVDATKERLSVYQAMKKGIIR K F L T K E 2 0 0 1 1 0 1 2 0 1 1 1 0 2 0 1 2 0 0 2 0 0 17 0 1813.892 Q15149;D3DWL0;Q96IE3 Q15149 4065 4081 PLEC;PLEC1 Plectin yes no 2 0.00013076 74.46 2 1.9172 1.9619 13.932 2 Median 1.9172 1.9619 13.932 2 0 Median NaN NaN NaN 0 0 Median 15976000 5371900 10604000 15976000 5371900 10604000 0 0 0 4245 1754 4360 11169;11170 17426;17427;17428 17428 3 FLEHLSGAGK MDADDSRAPKGSLRKFLEHLSGAGKAIGVL GSLRKFLEHLSGAGKAIGVLTSGGDAQGMN K F L G K A 1 0 0 0 0 0 1 2 1 0 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1057.5556 Q01813 Q01813 16 25 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 2 3.7286E-09 125.16 1 2.1535 2.2408 NaN 1 Median 2.1535 2.2408 NaN 1 0 Median NaN NaN NaN 0 0 Median 11555000 3348900 8206000 11555000 3348900 8206000 0 0 0 4246 1677 4361 11171 17429;17430 17429 2 FLENFCHSLQCDNLLSSQPFSSSR SIQLPPVNSASFALRFLENFCHSLQCDNLL QCDNLLSSQPFSSSRGHTHSSAEHDKNQSA R F L S R G 0 1 2 1 2 2 1 0 1 0 4 0 0 3 1 6 0 0 0 0 0 0 24 0 2872.2909 Q9UQR0;B4DZR9;B4DRC2 Q9UQR0 448 471 SCML2 Sex comb on midleg-like protein 2 yes no 3 0.033693 13.896 2 1.0552 0.90994 13.716 2 Median NaN NaN NaN 0 0 Median 1.0552 0.90994 13.716 2 0 Median 8584700 4355600 4229100 0 0 0 8584700 4355600 4229100 4247 2118 4362 11172;11173 17431;17432;17433;17434;17435 17434 5 FLEPTLR EIQTVNKQFPCEPFKFLEPTLRLEYCEALA QFPCEPFKFLEPTLRLEYCEALAMLREAGV K F L L R L 0 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 7 0 874.49125 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 306 312 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.031504 67.035 1 1.7067 1.7427 NaN 1 Median 1.7067 1.7427 NaN 1 0 Median NaN NaN NaN 0 0 Median 14670000 4210200 10460000 14670000 4210200 10460000 0 0 0 4248 610 4363 11174 17436 17436 1 FLEQQNQVLETK KVLNDKFASFIDKVRFLEQQNQVLETKWEL KVRFLEQQNQVLETKWELLQQLDLNNCKKN R F L T K W 0 0 1 0 0 3 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1475.762 CON__Q7RTS7;CON__Q32MB2;F8W1S1;Q7RTS7;Q86Y46 CON__Q7RTS7 160 171 KRT74;KRT73 Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73 no no 2 1.6856E-59 185.77 6 7 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 167360000 167360000 0 150220000 150220000 0 17136000 17136000 0 + 4249 1170 4364 11175;11176;11177;11178;11179;11180;11181;11182;11183;11184;11185;11186;11187 17437;17438;17439;17440;17441;17442;17443;17444;17445;17446;17447;17448;17449;17450;17451;17452;17453 17439 17 FLEQQNQVLQTK KSLNNQFASFIDKVRFLEQQNQVLQTKWEL KVRFLEQQNQVLQTKWELLQQVDTSTRTHN R F L T K W 0 0 1 0 0 4 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1474.778 CON__P35908;P35908;CON__Q6NXH9;CON__Q9R0H5;Q0IIN1;CON__Q7Z794;Q7Z794;H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 200 211 KRT2;KRT77;KRT1 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1 no no 2 7.3671E-141 253.88 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2558500000 2558500000 0 2311000000 2311000000 0 247490000 247490000 0 + 4250 1308;1309;1166 4365 11188;11189;11190;11191;11192;11193 17454;17455;17456;17457;17458;17459;17460;17461;17462;17463;17464;17465;17466;17467;17468 17455 15 FLEQSMDIEDLK EYVPPKPKPSRVKEKFLEQSMDIEDLKYCS KEKFLEQSMDIEDLKYCSEHSVNEHEDGDG K F L L K Y 0 0 0 2 0 1 2 0 0 1 2 1 1 1 0 1 0 0 0 0 0 0 12 0 1466.6963 Q59HG1;O95239;B4DYE2;B3KNC0;Q2VIQ3 Q59HG1 1037 1048 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 3.9257E-18 141.95 2 2 1.084 1.1301 8.9798 4 Linear 1.0087 1.1184 1.2354 2 0 Median 1.1893 0.96075 3.1054 2 0 Median 127200000 57760000 69444000 112600000 51528000 61071000 14605000 6232300 8372800 4251 1803 4366 11194;11195;11196;11197 17469;17470;17471;17472;17473;17474;17475;17476;17477 17469 1667 9 FLESLPEEEQQR KCDQKKKDYEVELLRFLESLPEEEQQRVLG LLRFLESLPEEEQQRVLGEEKMLNINKKQA R F L Q R V 0 1 0 0 0 2 4 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1503.7205 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0 E9PKP7 324 335 UBTF Nucleolar transcription factor 1 yes no 2 1.2247E-12 129.85 2 2 0.94965 0.95812 25.705 4 Median 0.65783 0.76774 1.7173 2 0 Median 1.3806 1.1974 1.9219 2 0 Median 614050000 341140000 272910000 480270000 284340000 195930000 133780000 56799000 76985000 4252 1244 4367 11198;11199;11200;11201 17478;17479;17480;17481;17482;17483;17484;17485;17486;17487;17488;17489;17490;17491;17492;17493 17478 16 FLESTDSFNNELK ELLQIEERHQEKKRKFLESTDSFNNELKRL RKFLESTDSFNNELKRLCGLKVEVDMEKIA K F L L K R 0 0 2 1 0 0 2 0 0 0 2 1 0 2 0 2 1 0 0 0 0 0 13 0 1542.7202 B4DGM3;A0A024R1S7;Q969G3;K7EMQ8;J3QKS7;H7C048 B4DGM3 241 253 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 0.00026518 67.334 2 2 0.96664 0.88056 5.6968 4 Median 0.77878 0.83941 0.12387 2 0 Median 1.1853 0.92632 0.51987 2 0 Median 81011000 45899000 35112000 73479000 42203000 31276000 7531600 3696500 3835100 4253 86 4368 11202;11203;11204;11205 17494;17495;17496;17497;17498;17499 17494 6 FLETVELQISLK AVREVLHGNQRKRRKFLETVELQISLKNYD RRKFLETVELQISLKNYDPQKDKRFSGTVR K F L L K N 0 0 0 0 0 1 2 0 0 1 3 1 0 1 0 1 1 0 0 1 0 0 12 0 1418.8021 P62906;Q1JQ76 P62906 28 39 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 2.6269E-05 100.48 1 1 0.99696 0.90402 28.557 2 Median 1.0668 1.1063 NaN 1 0 Median 0.93167 0.73872 NaN 1 0 Median 23116000 10956000 12159000 18784000 9053900 9730500 4331400 1902400 2429000 4254 1651 4369 11206;11207 17500;17501;17502;17503 17501 4 FLEVQYLTGGLIEPDTPGR QALKKGWLYYEAGQRFLEVQYLTGGLIEPD QYLTGGLIEPDTPGRVPLDEALQRGTVDAR R F L G R V 0 1 0 1 0 1 2 3 0 1 3 0 0 1 2 0 2 0 1 1 0 0 19 0 2104.0841 Q15149;D3DWL0;Q96IE3 Q15149 4524 4542 PLEC;PLEC1 Plectin yes no 2 1.2909E-39 154.65 2 1.7809 1.8889 5.1716 2 Median 1.7809 1.8889 5.1716 2 0 Median NaN NaN NaN 0 0 Median 57868000 20293000 37575000 57868000 20293000 37575000 0 0 0 4255 1754 4370 11208;11209 17504;17505;17506;17507 17505 4 FLEVQYLTGGLIEPDTPGRVPLDEALQR QALKKGWLYYEAGQRFLEVQYLTGGLIEPD PDTPGRVPLDEALQRGTVDARTAQKLRDVG R F L Q R G 1 2 0 2 0 2 3 3 0 1 5 0 0 1 3 0 2 0 1 2 0 0 28 1 3125.6397 Q15149;D3DWL0;Q96IE3 Q15149 4524 4551 PLEC;PLEC1 Plectin yes no 3 1.0926E-07 48.867 1 1.4362 1.4448 NaN 1 Median 1.4362 1.4448 NaN 1 0 Median NaN NaN NaN 0 0 Median 9786700 3635000 6151700 9786700 3635000 6151700 0 0 0 4256 1754 4371 11210 17508;17509 17508 2 FLFDSVSSQNVGLR LIDEDGNNQWPEGLKFLFDSVSSQNVGLRE KFLFDSVSSQNVGLREAALHIFWNFPGIFG K F L L R E 0 1 1 1 0 1 0 1 0 0 2 0 0 2 0 3 0 0 0 2 0 0 14 0 1567.7995 A0A024RDY0;H0Y8C6;O00410;C9JMV5;E7ETV3;H0Y3V4 A0A024RDY0 135 148 RANBP5;IPO5 Importin-5 yes no 2 0.014886 47.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4257 394 4372 11211 17510 17510 1 FLFSLFGQK IQTMCPIEGEGNIARFLFSLFGQKHNAVNA EGNIARFLFSLFGQKHNAVNATLIDSWVDI R F L Q K H 0 0 0 0 0 1 0 1 0 0 2 1 0 3 0 1 0 0 0 0 0 0 9 0 1085.591 B2R7M3;A0A024QZY1;Q13155;A8MU58;F8W950 B2R7M3 216 224 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 2 0.0059982 74.255 2 1 1.5441 1.5802 39.696 3 Plateau 1.5374 1.6011 1.8626 2 0 Median 0.9578 0.80537 NaN 1 0 Median 35232000 13188000 22044000 33640000 12369000 21270000 1592600 818900 773740 4258 32 4373 11212;11213;11214 17511;17512;17513;17514 17511 4 FLGAVAMDLGIDK AYSPRNPLKRTCIFKFLGAVAMDLGIDKVK FKFLGAVAMDLGIDKVKPYLPMIIAPLFRE K F L D K V 2 0 0 2 0 0 0 2 0 1 2 1 1 1 0 0 0 0 0 1 0 0 13 0 1348.7061 O75691;B4DN27 O75691 2650 2662 UTP20 Small subunit processome component 20 homolog yes no 2 0.001851 55.806 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9035800 0 9035800 9035800 0 9035800 0 0 0 4259 1412 4374 11215 17515 17515 1102 1 FLGDIEVWDQAEK FGFSFKLNLSTRPEKFLGDIEVWDQAEKQL EKFLGDIEVWDQAEKQLENSLNEFGEKWEL K F L E K Q 1 0 0 2 0 1 2 1 0 1 1 1 0 1 0 0 0 1 0 1 0 0 13 0 1548.746 Q5M7Z9;B2RDX5;Q53GX7;P26639;B4DKZ9;B3KTN2 Q5M7Z9 505 517 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.00013532 83.397 2 2.2405 2.2775 NaN 1 Median 2.2405 2.2775 NaN 1 0 Median NaN NaN NaN 0 0 Median 6409600 2156100 4253500 6409600 2156100 4253500 0 0 0 4260 892 4375 11216;11217 17516;17517;17518 17516 3 FLGLLYELEENTDK CTYINVQERDPKAHRFLGLLYELEENTDKA RFLGLLYELEENTDKAVECYRRSVELNPTQ R F L D K A 0 0 1 1 0 0 3 1 0 0 4 1 0 1 0 0 1 0 1 0 0 0 14 0 1682.8403 P49792;D3DX73 P49792 65 78 RANBP2;hCG_1994636 E3 SUMO-protein ligase RanBP2 yes no 2 0.019934 45.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2140600 2140600 0 2140600 2140600 0 0 0 0 4261 1588 4376 11218 17519 17519 1 FLGPEDSHVVVASNSPCLK QKQFAGYSEEVLDVRFLGPEDSHVVVASNS EDSHVVVASNSPCLKVFELQTSACQILHGH R F L L K V 1 0 1 1 1 0 1 1 1 0 2 1 0 1 2 3 0 0 0 3 0 0 19 0 2055.0095 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 342 360 TBL3 Transducin beta-like protein 3 no no 3 4.1985E-06 69.081 2 2 1.0277 0.96896 0.91381 4 Median 0.85958 0.96613 0.43098 2 0 Median 1.2233 0.97639 1.0969 2 0 Median 188870000 100360000 88515000 153910000 84618000 69290000 34965000 15741000 19225000 4262 1698;436 4377 11219;11220;11221;11222 17520;17521;17522;17523;17524;17525;17526;17527;17528;17529 17525 10 FLGQILTAFPALR KKMCSLAVVNLGTHKFLGQILTAFPALRFV HKFLGQILTAFPALRFVEEQGPNSSATFMV K F L L R F 2 1 0 0 0 1 0 1 0 1 3 0 0 2 1 0 1 0 0 0 0 0 13 0 1445.8395 Q9HBB9;Q8WUM5 Q9HBB9 566 578 GEMIN4 yes no 2 1.0167E-05 98.249 2 1.4178 1.5291 NaN 1 Median 1.4178 1.5291 NaN 1 0 Median NaN NaN NaN 0 0 Median 4896300 1402200 3494000 4896300 1402200 3494000 0 0 0 4263 1940 4378 11223;11224 17530;17531;17532 17531 3 FLGTSGQNVSDIFR QLVTNPYQATIDGVRFLGTSGQNVSDIFRY RFLGTSGQNVSDIFRYSSMEDHLEI_____ R F L F R Y 0 1 1 1 0 1 0 2 0 1 1 0 0 2 0 2 1 0 0 1 0 0 14 0 1539.7682 H7C1B3;B4DP28;F8W8R3;A0A087WWF6;P49005 H7C1B3 60 73 POLD2 DNA polymerase delta subunit 2 yes no 2 0.00016878 73.781 1 1.4022 1.4579 NaN 1 Median 1.4022 1.4579 NaN 1 0 Median NaN NaN NaN 0 0 Median 5436600 2457300 2979300 5436600 2457300 2979300 0 0 0 4264 425 4379 11225 17533 17533 1 FLHCTEK IDILTTCAADIQRQRFLHCTEKDLIPYLEK AADIQRQRFLHCTEKDLIPYLEKLSDSTLK R F L E K D 0 0 0 0 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 7 0 933.43784 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5 O75643 1589 1595 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.010107 119.56 1 1.0049 0.98503 NaN 1 Median 1.0049 0.98503 NaN 1 0 Median NaN NaN NaN 0 0 Median 20916000 10692000 10224000 20916000 10692000 10224000 0 0 0 4265 1411 4380 11226 17534 17534 1 FLHSEALLAVAQNR LMCEINVMEAVRDIRFLHSEALLAVAQNRW RFLHSEALLAVAQNRWLHIYDNQGIELHCI R F L N R W 3 1 1 0 0 1 1 0 1 0 3 0 0 1 0 1 0 0 0 1 0 0 14 0 1567.8471 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 244 257 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2;3 7.1316E-05 64.827 3 3 1.0518 0.95255 18.292 6 Median 0.76927 0.78743 18.136 3 0 Median 1.1931 0.97281 7.6038 3 0 Median 74891000 37566000 37325000 48284000 25855000 22429000 26607000 11711000 14896000 4266 809 4381 11227;11228;11229;11230;11231;11232 17535;17536;17537;17538;17539;17540;17541;17542;17543 17542 8 FLICTDVAAR ERKQNLERFKKGDVRFLICTDVAARGIDIH KGDVRFLICTDVAARGIDIHGVPYVINVTL R F L A R G 2 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1164.5961 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 487 496 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.00057853 90.657 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28088000 0 28088000 28088000 0 28088000 0 0 0 4267 452 4382 11233;11234 17544;17545 17545 2 FLIDNGVSLDSFSQAAAER RVALGETQLVQEVRRFLIDNGVSLDSFSQA NGVSLDSFSQAAAERSKTVILVKNLPAGTL R F L E R S 3 1 1 2 0 1 1 1 0 1 2 0 0 2 0 3 0 0 0 1 0 0 19 0 2038.996 Q9Y4C8;A0A024RBL4 Q9Y4C8 566 584 RBM19 Probable RNA-binding protein 19 yes no 2 0.01062 40.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2708500 0 2708500 2708500 0 2708500 0 0 0 4268 2145 4383 11235 17546 17546 1 FLILPDMLK VAQLEQVYIRGSKIRFLILPDMLKNAPMLK RGSKIRFLILPDMLKNAPMLKSMKNKNQGS R F L L K N 0 0 0 1 0 0 0 0 0 1 3 1 1 1 1 0 0 0 0 0 0 0 9 0 1088.6304 P62318 P62318 70 78 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes yes 2 0.001722 71.501 4 3 0.88191 0.88699 57.282 7 Median 1.1825 1.1951 37.216 4 0 Median 0.58119 0.46924 58.748 3 0 Median 100370000 38845000 61526000 87497000 31428000 56068000 12874000 7416700 5457300 4269 1646 4384;4385 11236;11237;11238;11239;11240;11241;11242 17547;17548;17549;17550;17551;17552;17553;17554;17555;17556;17557;17558;17559;17560 17552 1427 14 FLILQGEVEQIAMMK GNLLRSHGIDLDHNRFLILQGEVEQIAMMK FLILQGEVEQIAMMKPKGQTEHDEGMLEYL R F L M K P 1 0 0 0 0 2 2 1 0 2 2 1 2 1 0 0 0 0 0 1 0 0 15 0 1748.9205 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J578;C9JVD8 Q9NTJ3 225 239 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 4.5763E-10 115.33 2 1.3219 1.4253 3.4945 2 Median 1.3219 1.4253 3.4945 2 0 Median NaN NaN NaN 0 0 Median 72173000 29165000 43009000 72173000 29165000 43009000 0 0 0 4270 2070 4386 11243;11244 17561;17562;17563;17564;17565 17562 1899;1900 5 FLILQGEVEQIAMMKPK GNLLRSHGIDLDHNRFLILQGEVEQIAMMK ILQGEVEQIAMMKPKGQTEHDEGMLEYLED R F L P K G 1 0 0 0 0 2 2 1 0 2 2 2 2 1 1 0 0 0 0 1 0 0 17 1 1974.0682 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J578;C9JVD8 Q9NTJ3 225 241 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 1.6577E-05 78.932 1 1.459 1.6651 NaN 1 Median 1.459 1.6651 NaN 1 0 Median NaN NaN NaN 0 0 Median 12777000 4804500 7972200 12777000 4804500 7972200 0 0 0 4271 2070 4387 11245 17566 17566 1899;1900 1 FLIQNVLR DVLKDVLLPWYNAYRFLIQNVLRLQKEEEI PWYNAYRFLIQNVLRLQKEEEIEFLYNENT R F L L R L 0 1 1 0 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 1 0 0 8 0 1001.6022 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2 Q59G75 679 686 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.021408 67.035 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4272 1561 4388 11246 17567 17567 1 FLIVAHDDGR GNVTCEREVPGPDCRFLIVAHDDGRWSLQS GPDCRFLIVAHDDGRWSLQSEAHRRYFGGT R F L G R W 1 1 0 2 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1141.588 B3KTA3;Q16658 B3KTA3 70 79 FSCN1 Fascin yes no 3 0.028948 39.148 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14000000 0 14000000 14000000 0 14000000 0 0 0 4273 942 4389 11247 17568 17568 1 FLLEGQVFR VDFPEGIDRYKHFARFLLEGQVFRKLASYR YKHFARFLLEGQVFRKLASYRSCLLSSPGT R F L F R K 0 1 0 0 0 1 1 1 0 0 2 0 0 2 0 0 0 0 0 1 0 0 9 0 1107.6077 Q8IY37;F5H3Y4 Q8IY37 1067 1075 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.0069772 61.962 2 1 1.0694 1.0003 6.9829 3 Median 1.0101 1.0197 9.7498 2 0 Median 1.1652 1.0003 NaN 1 0 Median 32320000 17516000 14804000 29507000 16208000 13299000 2812800 1307900 1504900 4274 1897 4390 11248;11249;11250 17569;17570;17571;17572;17573 17572 5 FLLEHFTDEQR LKGKSNKERRMKIYKFLLEHFTDEQRFNIT KIYKFLLEHFTDEQRFNITSKICLSILACF K F L Q R F 0 1 0 1 0 1 2 0 1 0 2 0 0 2 0 0 1 0 0 0 0 0 11 0 1433.6939 P42695;Q96FA6;E9PLE0 P42695 1102 1112 NCAPD3 Condensin-2 complex subunit D3 yes no 3 0.00061224 54.7 2 2 1.2344 1.1642 29.304 4 Median 0.88517 0.94457 4.2835 2 0 Median 1.7896 1.536 13.911 2 0 Median 45130000 18688000 26443000 39561000 16961000 22600000 5569500 1726900 3842700 4275 1565 4391 11251;11252;11253;11254 17574;17575;17576;17577 17575 4 FLLGYFPWDSTK FRGGLSHALRKQAWKFLLGYFPWDSTKEER AWKFLLGYFPWDSTKEERTQLQKQKTDEYF K F L T K E 0 0 0 1 0 0 0 1 0 0 2 1 0 2 1 1 1 1 1 0 0 0 12 0 1472.734 C9JA93;A8K8E1;Q8TC07 C9JA93 242 253 TBC1D15 TBC1 domain family member 15 yes no 2 0.0036838 65.347 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1772200 0 1772200 1772200 0 1772200 0 0 0 4276 776 4392 11255;11256 17578;17579 17579 2 FLLHEPIVNK GSTAARTFYLIKDIRFLLHEPIVNKFREYK IKDIRFLLHEPIVNKFREYKVFVRKLRKAY R F L N K F 0 0 1 0 0 0 1 0 1 1 2 1 0 1 1 0 0 0 0 1 0 0 10 0 1208.6917 B5MCF9;B2RDF2;O00541 B5MCF9 72 81 PES1 Pescadillo homolog yes no 2;3 0.0035385 72.23 1 1 1.1156 1.0553 7.5094 2 Median 0.98954 1.1129 NaN 1 0 Median 1.2577 1.0007 NaN 1 0 Median 78852000 46434000 32417000 72186000 43437000 28749000 6666000 2997600 3668400 4277 886 4393 11257;11258 17580;17581;17582 17582 3 FLLLQGLVEK IYLPVIGQSPVVDKKFLLLQGLVEKEIDYQ VVDKKFLLLQGLVEKEIDYQRELLETLGMM K F L E K E 0 0 0 0 0 1 1 1 0 0 4 1 0 1 0 0 0 0 0 1 0 0 10 0 1158.7012 Q8TED0;H0Y8P4 Q8TED0 463 472 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 4.8926E-08 116.05 2 2 1.0849 1.0639 5.2348 4 Median 0.9536 1.0738 1.541 2 0 Median 1.2572 1.0148 6.9246 2 0 Median 190730000 95846000 94887000 143750000 75116000 68634000 46983000 20730000 26253000 4278 1936 4394 11259;11260;11261;11262 17583;17584;17585;17586;17587;17588;17589;17590;17591 17591 9 FLLQDTVELR MCSLMLSKELPARIRFLLQDTVELREHHWV PARIRFLLQDTVELREHHWVPRKAFLDNGP R F L L R E 0 1 0 1 0 1 1 0 0 0 3 0 0 1 0 0 1 0 0 1 0 0 10 0 1232.6765 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89;H0YCH5 D3DQV9 296 305 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 8.504E-22 149.94 2 2 1.7298 1.7932 23.688 3 Plateau 1.7317 1.7999 NaN 1 0 Median 1.3851 1.1942 0.26825 2 0 Median 63283000 16386000 46897000 57752000 13882000 43871000 5530200 2504000 3026200 4279 1054 4395 11263;11264;11265;11266 17592;17593;17594;17595;17596;17597;17598 17595 7 FLLSDQSLLLLPEYHQR LRERMQIQKEMERLRFLLSDQSLLLLPEYH LSDQSLLLLPEYHQRVEVLRTLGYVDEAGT R F L Q R V 0 1 0 1 0 2 1 0 1 0 6 0 0 1 1 2 0 0 1 0 0 0 17 0 2071.1102 B4DSY1;Q9NPK3;Q96BC0;O76046;Q15477;B4E0N1;B4DM01;H7C4L3 B4DSY1 676 692 SKIV2L;SKI2W Helicase SKI2W yes no 3 0.0015744 34.909 1 1.2763 1.2822 NaN 1 Median 1.2763 1.2822 NaN 1 0 Median NaN NaN NaN 0 0 Median 6662700 3162200 3500500 6662700 3162200 3500500 0 0 0 4280 1031 4396 11267 17599 17599 1 FLNAEGSGGIVGHDEISR KRQKTATKGNQRVQKFLNAEGSGGIVGHDE AEGSGGIVGHDEISRCSLSEPLESDEADLA K F L S R C 1 1 1 1 0 0 2 4 1 2 1 0 0 1 0 2 0 0 0 1 0 0 18 0 1856.9017 Q03188;H0Y8J2 Q03188 594 611 CENPC Centromere protein C yes no 3 0.0047267 39.657 2 1.2967 1.112 NaN 1 Median NaN NaN NaN 0 0 Median 1.2967 1.112 NaN 1 0 Median 12938000 4066100 8871900 0 0 0 12938000 4066100 8871900 4281 1681 4397 11268;11269 17600;17601 17601 2 FLNAENAQK DFADECPKPELLAIRFLNAENAQKFKTKFE ELLAIRFLNAENAQKFKTKFEECRKEIEER R F L Q K F 2 0 2 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1033.5193 A0A140VK94;F6WQW2;P43487;C9JXG8;D3DX26;C9JGV6;B3KUP2 A0A140VK94 142 150 RANBP1 Ran-specific GTPase-activating protein yes no 2 8.5006E-05 101.33 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42828000 0 42828000 42828000 0 42828000 0 0 0 4282 621 4398 11270;11271 17602;17603 17602 2 FLPAVSDENSK RKARKQKGAETELVRFLPAVSDENSKRLSS ELVRFLPAVSDENSKRLSSRARKRAAKRRL R F L S K R 1 0 1 1 0 0 1 0 0 0 1 1 0 1 1 2 0 0 0 1 0 0 11 0 1205.5928 P46087;F5H5X6;F5GWB7;F5H709;F5H359;F5H8G6 P46087 31 41 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 5.4602E-10 129.38 2 1.0877 1.2695 4.3362 2 Median 1.0877 1.2695 4.3362 2 0 Median NaN NaN NaN 0 0 Median 539830000 270440000 269400000 539830000 270440000 269400000 0 0 0 4283 1570 4399 11272;11273 17604;17605;17606;17607 17604 4 FLPNAPK VKSQHSGNAQVTQTKFLPNAPKALIVEPSR NAQVTQTKFLPNAPKALIVEPSRELAEQTL K F L P K A 1 0 1 0 0 0 0 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 7 0 785.44357 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 201 207 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.032217 65.897 2 1.3372 1.4712 0.8862 2 Median 1.3372 1.4712 0.8862 2 0 Median NaN NaN NaN 0 0 Median 138700000 57687000 81017000 138700000 57687000 81017000 0 0 0 4284 452 4400 11274;11275 17608;17609 17608 2 FLPRPPGEK QKFYIDPYKLLPLQRFLPRPPGEKGPPRGG LLPLQRFLPRPPGEKGPPRGGGRGGRGGGR R F L E K G 0 1 0 0 0 0 1 1 0 0 1 1 0 1 3 0 0 0 0 0 0 0 9 1 1039.5815 A0A024RDJ3;Q9NY12 A0A024RDJ3 157 165 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2;3 0.012862 85.212 3 0.75488 0.89977 2.0793 3 Plateau 0.75488 0.89977 2.0793 3 0 Plateau NaN NaN NaN 0 0 Median 133240000 81042000 52196000 133240000 81042000 52196000 0 0 0 4285 387 4401 11276;11277;11278 17610;17611;17612;17613;17614 17610 5 FLQEEAEK ENRALILRDKDNTQRFLQEEAEKMKQVAEE DKDNTQRFLQEEAEKMKQVAEEAARLSVAA R F L E K M 1 0 0 0 0 1 3 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 992.48148 Q15149 Q15149 2402 2409 PLEC Plectin yes yes 2 0.0031073 102.72 2 1.6211 1.6485 NaN 1 Median 1.6211 1.6485 NaN 1 0 Median NaN NaN NaN 0 0 Median 27978000 4976800 23001000 27978000 4976800 23001000 0 0 0 4286 1754 4402 11279;11280 17615;17616 17616 2 FLQGDSFLNEDLNQLIK FNPPVESSNPKIKGKFLQGDSFLNEDLNQL QGDSFLNEDLNQLIKRYSSEVATESPLDFT K F L I K R 0 0 2 2 0 2 1 1 0 1 4 1 0 2 0 1 0 0 0 0 0 0 17 0 1993.0157 A8K905;Q8WTT2 A8K905 761 777 NOC3L Nucleolar complex protein 3 homolog yes no 2 3.5108E-05 80.69 2 1.0242 1.1225 4.2871 2 Median 1.0242 1.1225 4.2871 2 0 Median NaN NaN NaN 0 0 Median 86061000 41921000 44140000 86061000 41921000 44140000 0 0 0 4287 780 4403 11281;11282 17617;17618;17619 17618 3 FLQGFMAPK FGECVIALQASVIKKFLQGFMAPKQKRRKL ASVIKKFLQGFMAPKQKRRKLQSEDSAKTE K F L P K Q 1 0 0 0 0 1 0 1 0 0 1 1 1 2 1 0 0 0 0 0 0 0 9 0 1037.5368 Q9UIG0 Q9UIG0 1108 1116 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 2.1543E-05 102.71 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58404000 0 58404000 58404000 0 58404000 0 0 0 4288 2103 4404 11283 17620;17621 17621 1926 2 FLQVQPVSR LLQETLYMCVGIMDRFLQVQPVSRKKLQLV VGIMDRFLQVQPVSRKKLQLVGITALLLAS R F L S R K 0 1 0 0 0 2 0 0 0 0 1 0 0 1 1 1 0 0 0 2 0 0 9 0 1072.6029 H0YMP3;H1UBN3;Q5U0M0;Q53HG9;O95067 H0YMP3 116 124 CCNB2;CCNB2V G2/mitotic-specific cyclin-B2 yes no 2 2.4592E-05 114.28 2 2 1.0068 0.98308 10.828 4 Median 1.0068 1.0184 7.1397 2 0 Median 1.0453 0.9095 13.148 2 0 Median 41295000 21236000 20058000 37804000 19795000 18009000 3490500 1441100 2049400 4289 1297 4405 11284;11285;11286;11287 17622;17623;17624;17625;17626;17627;17628 17624 7 FLSAIVSSVDK RLDSSIRNMRAVTDKFLSAIVSSVDKIPYG VTDKFLSAIVSSVDKIPYGMRFIAKVLKDS K F L D K I 1 0 0 1 0 0 0 0 0 1 1 1 0 1 0 3 0 0 0 2 0 0 11 0 1164.639 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;H0YLE8;B4E2M0 A4QPB0 1145 1155 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.047667 43.77 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4290 352 4406 11288 17629 17629 1 FLSESVLAVAGDEEVIR ISGTITNEKRISSVKFLSESVLAVAGDEEV SESVLAVAGDEEVIRFFDCDSLVCLCEFKA K F L I R F 2 1 0 1 0 0 3 1 0 1 2 0 0 1 0 2 0 0 0 3 0 0 17 0 1832.952 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 212 228 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 5.6791E-09 102.66 1 2 1.2223 1.1024 3.7066 3 Median 1.0386 1.1306 NaN 1 0 Median 1.2429 1.0764 3.3745 2 0 Median 130320000 55887000 74429000 51030000 25437000 25593000 79286000 30450000 48836000 4291 580 4407 11289;11290;11291 17630;17631;17632;17633;17634 17630 5 FLSLANK NSLYGPGTNRTTVNKFLSLANKRLPVKRAA TNRTTVNKFLSLANKRLPVKRAAVQFLNNA K F L N K R 1 0 1 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 7 0 791.45414 A0A024QZW2;Q9UMY1 A0A024QZW2 211 217 NOL7 Nucleolar protein 7 yes no 2 0.015104 99.384 2 1 0.92316 1.0087 14.218 3 Plateau 0.89226 1.0039 5.0897 2 0 Median 0.99908 0.79109 NaN 1 0 Median 251430000 132250000 119180000 245150000 129350000 115800000 6277600 2901300 3376300 4292 30 4408 11292;11293;11294 17635;17636;17637;17638 17636 4 FLSNGHVTIPGQQDK HLKTDLLLEPYNKYRFLSNGHVTIPGQQDK FLSNGHVTIPGQQDKDMFQETMEAMRIMGI R F L D K D 0 0 1 1 0 2 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 0 15 0 1639.8318 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 302 316 MYH9 Myosin-9 yes no 2;3 1.6491E-06 96.489 3 1 1.8024 1.9102 24.412 4 Median 1.7239 1.9057 0.654 3 0 Median 3.9062 3.1012 NaN 1 0 Median 168760000 60991000 107770000 162270000 59757000 102510000 6496900 1234100 5262800 4293 81 4409 11295;11296;11297;11298 17639;17640;17641;17642;17643;17644 17641 6 FLSPPALQGYVAWLR NQGLPVTPTFWRVVRFLSPPALQGYVAWLR FLSPPALQGYVAWLRAMFLQPDLDSLVDFS R F L L R A 2 1 0 0 0 1 0 1 0 0 3 0 0 1 2 1 0 1 1 1 0 0 15 0 1716.9352 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 397 411 MYBBP1A Myb-binding protein 1A yes no 2 0.00012906 80.706 2 1 0.73885 0.80908 11.501 3 Median 0.72459 0.77062 6.8882 2 0 Median 1.1304 0.92303 NaN 1 0 Median 65488000 36075000 29413000 51128000 29621000 21507000 14360000 6453300 7906400 4294 1997 4410 11299;11300;11301 17645;17646;17647;17648;17649;17650 17649 5 FLSPQDTFEALK LKDHVGRNNGNGLVKFLSPQDTFEALKRNR LVKFLSPQDTFEALKRNRMLMIQRYVEVSP K F L L K R 1 0 0 1 0 1 1 0 0 0 2 1 0 2 1 1 1 0 0 0 0 0 12 0 1394.7082 B4DRP9;Q69YJ7;Q9NTZ6 B4DRP9 149 160 DKFZp667H197;RBM12 RNA-binding protein 12 yes no 2 0.021318 38.75 1 0.61875 0.62508 NaN 1 Median 0.61875 0.62508 NaN 1 0 Median NaN NaN NaN 0 0 Median 8461700 3870700 4591000 8461700 3870700 4591000 0 0 0 4295 1027 4411 11302 17651 17651 1 FLSSAAAVSK GAAMNVAYTDGDLERFLSSAAAVSKEHPVV GDLERFLSSAAAVSKEHPVVISKFIQEAKE R F L S K E 3 0 0 0 0 0 0 0 0 0 1 1 0 1 0 3 0 0 0 1 0 0 10 0 979.53385 Q53SY7;F8VPD4;P27708 Q53SY7 1036 1045 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.01288 50.034 1 0.74032 0.78115 NaN 1 Median 0.74032 0.78115 NaN 1 0 Median NaN NaN NaN 0 0 Median 19977000 9437500 10540000 19977000 9437500 10540000 0 0 0 4296 1259 4412 11303 17652 17652 1 FLTLPPVLHLQLMR DAGEHGLQEAEKGVKFLTLPPVLHLQLMRF KFLTLPPVLHLQLMRFMYDPQTDQNIKIND K F L M R F 0 1 0 0 0 1 0 0 1 0 5 0 1 1 2 0 1 0 0 1 0 0 14 0 1676.98 Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q93009 395 408 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.0001875 58.674 1 0.98577 0.99228 NaN 1 Median 0.98577 0.99228 NaN 1 0 Median NaN NaN NaN 0 0 Median 10830000 4864400 5965500 10830000 4864400 5965500 0 0 0 4297 1954 4413 11304 17653 17653 1803 1 FLTVMMK KRQVLIRPCSKVIVRFLTVMMKHGYIGEFE PCSKVIVRFLTVMMKHGYIGEFEIIDDHRA R F L M K H 0 0 0 0 0 0 0 0 0 0 1 1 2 1 0 0 1 0 0 1 0 0 7 0 868.45507 B2R4W8;P62244;I3L3P7;A8K7H3;I3L246;H3BN98;H3BV27;H3BT37;I3L303 B2R4W8 37 43 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 0.021843 49.358 3 3.943 4.4188 12.028 2 Median 3.943 4.4188 12.028 2 0 Median NaN NaN NaN 0 0 Median 215340000 30781000 184560000 215340000 30781000 184560000 0 0 0 4298 831 4414 11305;11306;11307 17654;17655;17656 17654 658;659 1 FLVHESFLYR PLRPLEFLRTSLGGRFLVHESFLYRKEKAA SLGGRFLVHESFLYRKEKAAGEKVYWMCRD R F L Y R K 0 1 0 0 0 0 1 0 1 0 2 0 0 2 0 1 0 0 1 1 0 0 10 0 1309.6819 Q4VC44;I3L188;J3KNW1;B3KRZ0;B3KPY2;B3KP60 Q4VC44 609 618 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 3 0.0453 25.296 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7091400 7091400 0 7091400 7091400 0 0 0 0 4299 1781 4415 11308 17657 17657 1 FLVHNVK SNKKTKHMLPSGFRKFLVHNVKELEVLLMC MLPSGFRKFLVHNVKELEVLLMCNKSYCAE K F L V K E 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 2 0 0 7 0 855.49667 D3YTB1;A0A024R2G7;F8W727;P62910;A0A090N8E7 D3YTB1 77 83 RPL32;LOC402318 60S ribosomal protein L32 yes no 2 0.0099923 116 2 2 0.79738 0.80243 34.016 4 Median 0.92874 1.1068 11.003 2 0 Median 0.73555 0.62063 1.8512 2 0 Median 2583800000 1362500000 1221300000 2472900000 1300100000 1172800000 110920000 62424000 48495000 4300 112 4416 11309;11310;11311;11312 17658;17659;17660;17661;17662;17663 17661 6 FLVQNIHTLAELK LYMWLSNSPHGPSAKFLVQNIHTLAELKMT AKFLVQNIHTLAELKMTGNCLKGSRPLLSF K F L L K M 1 0 1 0 0 1 1 0 1 1 3 1 0 1 0 0 1 0 0 1 0 0 13 0 1524.8664 Q8TDN6;A0JLQ5;B4E0B8 Q8TDN6 141 153 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2;3 9.4942E-11 149.23 6 4 1.1422 1.1607 12.461 7 Median 0.97917 1.1546 8.9906 4 0 Median 1.4734 1.2616 18.522 3 0 Plateau 1195700000 554650000 641080000 964220000 466510000 497710000 231510000 88135000 143370000 4301 1934 4417 11313;11314;11315;11316;11317;11318;11319;11320;11321;11322 17664;17665;17666;17667;17668;17669;17670;17671;17672;17673;17674;17675;17676;17677;17678;17679;17680;17681;17682;17683;17684 17679 21 FLYDDNQR LARLLFPPKDDHTLKFLYDDNQRVEPEWYI KDDHTLKFLYDDNQRVEPEWYIPIIPMVLI K F L Q R V 0 1 1 2 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1069.4829 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 P11388 828 835 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.0038328 95.541 3 0.70473 0.83594 2.3616 2 Median 0.70473 0.83594 2.3616 2 0 Median NaN NaN NaN 0 0 Median 2835000000 1643000000 1192000000 2835000000 1643000000 1192000000 0 0 0 4302 1471;1679 4418 11323;11324;11325 17685;17686;17687;17688 17687 4 FLYESSSR KTFMEITLEEDSIERFLYESSSRTLGELLN EEDSIERFLYESSSRTLGELLNS_______ R F L S R T 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 3 0 0 1 0 0 0 8 0 987.46616 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DXB7;Q75L29 Q86XI2 1128 1135 NCAPG2;FLJ20311 Condensin-2 complex subunit G2 yes no 2 0.017078 60.682 2 1 0.86732 0.92617 33.777 3 Median 0.85214 0.89201 5.3138 2 0 Median 1.923 1.5954 NaN 1 0 Median 55668000 31962000 23707000 50514000 29928000 20586000 5154500 2033900 3120700 4303 1887 4419 11326;11327;11328 17689;17690;17691 17690 3 FLYQLHETEK ERIMGKMEADPELSKFLYQLHETEKEDLIR PELSKFLYQLHETEKEDLIREERSRRERVR K F L E K E 0 0 0 0 0 1 2 0 1 0 2 1 0 1 0 0 1 0 1 0 0 0 10 0 1306.6558 O75643;A4FU77;Q9H8B9 O75643 359 368 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00050608 71.451 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4304 1411 4420 11329 17692 17692 1 FMDASALTGIPLPLIK KLYLVFEFLHQDLKKFMDASALTGIPLPLI MDASALTGIPLPLIKSYLFQLLQGLAFCHS K F M I K S 2 0 0 1 0 0 0 1 0 2 3 1 1 1 2 1 1 0 0 0 0 0 16 0 1685.9426 A0A024RB10;A0A024RB77;G3V5T9;P24941;E7ESI2;B4DDL9 A0A024RB10 90 105 CDK2 Cyclin-dependent kinase 2 yes no 2 8.4371E-27 139.76 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18951000 0 18951000 18951000 0 18951000 0 0 0 4305 318 4421 11330;11331 17693;17694 17694 242 2 FMFNIADGGFTELHSLWQNEER KDLNDEKQKKNIKQRFMFNIADGGFTELHS GGFTELHSLWQNEERAATVTKKTYEIWHRR R F M E R A 1 1 2 1 0 1 3 2 1 1 2 0 1 3 0 1 1 1 0 0 0 0 22 0 2640.2067 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1689 1710 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 9.611E-09 70.917 2 0.78133 0.77568 6.9965 2 Median 0.78133 0.77568 6.9965 2 0 Median NaN NaN NaN 0 0 Median 24308000 13361000 10947000 24308000 13361000 10947000 0 0 0 4306 515 4422 11332;11333 17695;17696;17697 17696 372 3 FMIELTK ENGRIDNIFTEPYSRFMIELTKLLKIWEPT IFTEPYSRFMIELTKLLKIWEPTILPNGYM R F M T K L 0 0 0 0 0 0 1 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 7 0 880.47283 Q5VZL5;H7C1I7 Q5VZL5 1335 1341 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.035484 40.268 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5379600 0 5379600 5379600 0 5379600 0 0 0 4307 1835 4423 11334 17698 17698 1690 1 FMNAVFFLLPK CLNKVTKSFPPLADRFMNAVFFLLPKFHGV LADRFMNAVFFLLPKFHGVLKTLCLEVVLC R F M P K F 1 0 1 0 0 0 0 0 0 0 2 1 1 3 1 0 0 0 0 1 0 0 11 0 1325.7206 P78527 P78527 2378 2388 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00014196 84.615 3 0.99967 1.0592 NaN 1 Median 0.99967 1.0592 NaN 1 0 Median NaN NaN NaN 0 0 Median 23517000 7571500 15945000 23517000 7571500 15945000 0 0 0 4308 1665 4424 11335;11336;11337 17699;17700;17701;17702 17702 1448 4 FMNHSCQPNCETLK KDRIIDAGPKGNYSRFMNHSCQPNCETLKW RFMNHSCQPNCETLKWTVNGDTRVGLFAVC R F M L K W 0 0 2 0 2 1 1 0 1 0 1 1 1 1 1 1 1 0 0 0 0 0 14 0 1764.7382 O96028 O96028 1139 1152 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.0015472 47.559 1 0.6804 0.73001 NaN 1 Median 0.6804 0.73001 NaN 1 0 Median NaN NaN NaN 0 0 Median 3812400 2146800 1665600 3812400 2146800 1665600 0 0 0 4309 1435 4425 11338 17703 17703 1134 1 FMQDPMEVFVDDETK FSATLSKDIRPVCRKFMQDPMEVFVDDETK FMQDPMEVFVDDETKLTLHGLQQYYVKLKD K F M T K L 0 0 0 3 0 1 2 0 0 0 0 1 2 2 1 0 1 0 0 2 0 0 15 0 1829.7852 O00148;B4DX78 O00148 241 255 DDX39A ATP-dependent RNA helicase DDX39A yes no 2 5.3747E-11 107.37 4 2.359 2.3684 16.599 2 Median 2.359 2.3684 16.599 2 0 Median NaN NaN NaN 0 0 Median 36133000 6155900 29977000 36133000 6155900 29977000 0 0 0 4310 1359 4426 11339;11340;11341;11342 17704;17705;17706;17707;17708;17709 17706 1026;1027 6 FMYDPQTDQNIK KFLTLPPVLHLQLMRFMYDPQTDQNIKIND LMRFMYDPQTDQNIKINDRFEFPEQLPLDE R F M I K I 0 0 1 2 0 2 0 0 0 1 0 1 1 1 1 0 1 0 1 0 0 0 12 0 1498.6762 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q93009 409 420 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.00033887 67.113 2 0.74734 0.76572 NaN 1 Median 0.74734 0.76572 NaN 1 0 Median NaN NaN NaN 0 0 Median 14183000 9292000 4890700 14183000 9292000 4890700 0 0 0 4311 1954 4427 11343;11344 17710;17711;17712 17711 1804 3 FNADEFEDMVAEK GRQKIHISKKWGFTKFNADEFEDMVAEKRL TKFNADEFEDMVAEKRLIPDGCGVKYI___ K F N E K R 2 0 1 2 0 0 3 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 13 0 1543.6501 F8W7C6;A0A087WV22;X5D7P1;X1WI28;X5D2T3;P27635 X1WI28 176 188 RPL10 60S ribosomal protein L10 no no 2 3.9663E-89 229 6 7 1.2124 0.95315 33.084 13 Median 1.2276 1.4312 38.603 6 0 Median 0.89914 0.74042 18.295 7 0 Median 1499200000 692080000 807130000 1266200000 572170000 694030000 233020000 119910000 113100000 4312 1524;1266 4428;4429 11345;11346;11347;11348;11349;11350;11351;11352;11353;11354;11355;11356;11357 17713;17714;17715;17716;17717;17718;17719;17720;17721;17722;17723;17724;17725;17726;17727;17728;17729;17730;17731;17732;17733;17734;17735;17736;17737;17738;17739;17740;17741;17742 17716 970 30 FNAHGDANTIVCNSK LGKDSNNLCLHFNPRFNAHGDANTIVCNSK FNAHGDANTIVCNSKDGGAWGTEQREAVFP R F N S K D 2 0 3 1 1 0 0 1 1 1 0 1 0 1 0 1 1 0 0 1 0 0 15 0 1646.7471 P09382 P09382 50 64 LGALS1 Galectin-1 yes yes 3 6.9642E-05 58.83 1 7.9383 8.2477 NaN 1 Median 7.9383 8.2477 NaN 1 0 Median NaN NaN NaN 0 0 Median 24642000 4114200 20528000 24642000 4114200 20528000 0 0 0 4313 1460 4430 11358 17743 17743 1 FNALFAQGNYSEAAK VRNNLAGAEELFARKFNALFAQGNYSEAAK FNALFAQGNYSEAAKVAANAPKGILRTPDT K F N A K V 4 0 2 0 0 1 1 1 0 0 1 1 0 2 0 1 0 0 1 0 0 0 15 0 1629.7787 A0A087WVQ6;Q00610 A0A087WVQ6 372 386 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 9.8416E-05 90.653 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4314 419 4431 11359;11360 17744;17745 17745 2 FNALITTYEILLK IREYEWIHSQTKRLKFNALITTYEILLKDK LKFNALITTYEILLKDKTVLGSINWAFLGV K F N L K D 1 0 1 0 0 0 1 0 0 2 3 1 0 1 0 0 2 0 1 0 0 0 13 0 1537.8756 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 589 601 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0049438 59.542 2 0.88713 0.96088 NaN 1 Median 0.88713 0.96088 NaN 1 0 Median NaN NaN NaN 0 0 Median 5075900 1926700 3149200 5075900 1926700 3149200 0 0 0 4315 354 4432 11361;11362 17746;17747 17746 2 FNAPGAQQFCFLLSTR DGGITGNMRQEAIDRFNAPGAQQFCFLLST NAPGAQQFCFLLSTRAGGLGINLATADTVI R F N T R A 2 1 1 0 1 2 0 1 0 0 2 0 0 3 1 1 1 0 0 0 0 0 16 0 1855.9039 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;Q659F1;Q659D0;B3KRD4;F6T542;Q12873;B4DLC6 F5GWX5 1105 1120 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 3.4261E-06 89.231 2 1.2915 1.0901 1.494 2 Median NaN NaN NaN 0 0 Median 1.2915 1.0901 1.494 2 0 Median 42516000 20702000 21813000 0 0 0 42516000 20702000 21813000 4316 515;1701 4433 11363;11364 17748;17749;17750 17748 3 FNASQLITQR LPSIVNEVLKSVVAKFNASQLITQRAQVSL SVVAKFNASQLITQRAQVSLLIRRELTERA K F N Q R A 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 10 0 1176.6251 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 148 157 PHB2 Prohibitin-2 yes no 2 3.8685E-16 154.05 2 2 1.9416 1.9636 10.951 4 Median 1.5112 1.771 3.4309 2 0 Median 2.4863 2.134 0.5924 2 0 Median 678470000 259720000 418750000 620310000 243250000 377060000 58164000 16474000 41690000 4317 1328 4434 11365;11366;11367;11368 17751;17752;17753;17754;17755;17756 17754 6 FNDIHVPVR LATQNRPLWQCFLGRFNDIHVPVRLESVKF QCFLGRFNDIHVPVRLESVKFASHCLMNHP R F N V R L 0 1 1 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 2 0 0 9 0 1095.5825 G1UI16;Q29RF7 G1UI16 332 340 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 3 0.03042 30.797 1 0.68465 0.67394 NaN 1 Median 0.68465 0.67394 NaN 1 0 Median NaN NaN NaN 0 0 Median 13284000 7604300 5680000 13284000 7604300 5680000 0 0 0 4318 1270 4435 11369 17757 17757 1 FNDSEGDDTEETEDYR EALDYFSDKESGKQKFNDSEGDDTEETEDY NDSEGDDTEETEDYRQFRKSVLADQGKSFA K F N Y R Q 0 1 1 4 0 0 4 1 0 0 0 0 0 1 0 1 2 0 1 0 0 0 16 0 1920.7133 Q9NYF8;Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91 Q9NYF8 394 409 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 1.8174E-24 138.02 2 1.3484 1.4004 3.9864 2 Median 1.3484 1.4004 3.9864 2 0 Median NaN NaN NaN 0 0 Median 42307000 19496000 22811000 42307000 19496000 22811000 0 0 0 4319 2083 4436 11370;11371 17758;17759;17760;17761;17762 17762 5 FNECGHVLYADIK RNLPFDFTWKMLKDKFNECGHVLYADIKME DKFNECGHVLYADIKMENGKSKGCGVVKFE K F N I K M 1 0 1 1 1 0 1 1 1 1 1 1 0 1 0 0 0 0 1 1 0 0 13 0 1564.7344 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7 P52272 673 685 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 3 4.5251E-05 83.692 2 2 1.1793 1.1118 35.171 4 Median 1.3658 1.5385 6.8684 2 0 Median 1.0453 0.83992 0.58429 2 0 Median 162800000 77337000 85467000 139130000 65923000 73211000 23670000 11414000 12256000 4320 1599 4437 11372;11373;11374;11375 17763;17764;17765;17766 17764 4 FNEEHIPDSPFVVPVASPSGDAR AYVVQEPGDYEVSVKFNEEHIPDSPFVVPV SPFVVPVASPSGDARRLTVSSLQESGLKVN K F N A R R 2 1 1 2 0 0 2 1 1 1 0 0 0 2 4 3 0 0 0 3 0 0 23 0 2466.1816 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5C6;Q2VP91 P21333 2311 2333 FLNA;FLJ00119 Filamin-A yes no 3 8.7299E-06 41.911 1 1.2404 1.3527 NaN 1 Median 1.2404 1.3527 NaN 1 0 Median NaN NaN NaN 0 0 Median 29626000 13581000 16045000 29626000 13581000 16045000 0 0 0 4321 1504 4438 11376 17767 17767 1 FNEENYGVK ESDMSNGWDPNEMFKFNEENYGVKTTYDSS PNEMFKFNEENYGVKTTYDSSLSSYTVPLE K F N V K T 0 0 2 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 9 0 1098.4982 A0A024QZC0;A0A024QZB7;A0A024QZ91;Q8WWM7;H3BSK9;H3BUF6 A0A024QZC0 137 145 ATXN2L Ataxin-2-like protein yes no 2 0.0073007 70.525 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6445300 0 6445300 6445300 0 6445300 0 0 0 4322 14 4439 11377 17768 17768 1 FNETLMK AIGLMSGQVIIHNIKFNETLMKFRQDWGPI QVIIHNIKFNETLMKFRQDWGPITSISFRT K F N M K F 0 0 1 0 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 7 0 881.43169 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 222 228 WDR36 WD repeat-containing protein 36 yes no 2 0.012913 75.243 1 1.4124 1.5918 NaN 1 Median 1.4124 1.5918 NaN 1 0 Median NaN NaN NaN 0 0 Median 60470000 24436000 36034000 60470000 24436000 36034000 0 0 0 4323 486 4440 11378 17769 17769 331 1 FNFFVNK QRMEAENLASVIDARFNFFVNKILPQYRDA LASVIDARFNFFVNKILPQYRDAVMSHTLI R F N N K I 0 0 2 0 0 0 0 0 0 0 0 1 0 3 0 0 0 0 0 1 0 0 7 0 914.46504 A8K0P8;Q68CQ4;B3KVX2 A8K0P8 595 601 DIEXF Digestive organ expansion factor homolog yes no 2 0.026734 77.496 1 0.92585 0.94198 NaN 1 Median 0.92585 0.94198 NaN 1 0 Median NaN NaN NaN 0 0 Median 14009000 7374400 6635000 14009000 7374400 6635000 0 0 0 4324 699 4441 11379 17770 17770 1 FNFGEEEFK QALFPACVLKNAELKFNFGEEEFKFPPKDG KNAELKFNFGEEEFKFPPKDGFVALSKAPD K F N F K F 0 0 1 0 0 0 3 1 0 0 0 1 0 3 0 0 0 0 0 0 0 0 9 0 1145.5029 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 159 167 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.00028235 103.56 2 2 1.603 1.5381 7.8029 4 Median 1.2818 1.4394 1.0392 2 0 Median 2.0539 1.6461 1.2635 2 0 Median 140010000 57130000 82879000 128440000 53055000 75388000 11565000 4074500 7490200 4325 452 4442 11380;11381;11382;11383 17771;17772;17773;17774;17775;17776 17772 6 FNHPVEVQK RHGDRVILGGDHYFRFNHPVEVQKGKRPSG GDHYFRFNHPVEVQKGKRPSGRDTPISEGP R F N Q K G 0 0 1 0 0 1 1 0 1 0 0 1 0 1 1 0 0 0 0 2 0 0 9 0 1096.5665 Q15058 Q15058 898 906 KIF14 Kinesin-like protein KIF14 yes yes 2 0.0010628 96.668 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2239900 0 2239900 2239900 0 2239900 0 0 0 4326 1751 4443 11384;11385 17777;17778 17778 2 FNILGTNTK DKDSGDVAALRGSRKFNILGTNTKVMNMEE LRGSRKFNILGTNTKVMNMEESNNGSLSAE K F N T K V 0 0 2 0 0 0 0 1 0 1 1 1 0 1 0 0 2 0 0 0 0 0 9 0 1006.5447 G8JLH9;B4DNP0;B7ZA24;B4DVR6;B5BTZ6;P40763 G8JLH9 286 294 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 2 0.0071925 70.747 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5222000 0 5222000 5222000 0 5222000 0 0 0 4327 1015 4444 11386 17779 17779 1 FNIPPSTLSTILK VEENPDLRKGEIARRFNIPPSTLSTILKNK RRFNIPPSTLSTILKNKRAILASERKYGVA R F N L K N 0 0 1 0 0 0 0 0 0 2 2 1 0 1 2 2 2 0 0 0 0 0 13 0 1429.8181 P07199;Q71VN4 P07199 35 47 CENPB Major centromere autoantigen B yes no 2 0.0001891 71.03 2 1 1.1342 1.1428 14.21 3 Median 1.1269 1.1214 2.6787 2 0 Median 1.7538 1.4311 NaN 1 0 Median 57638000 26114000 31525000 51375000 23940000 27435000 6263000 2173500 4089500 4328 1450 4445 11387;11388;11389 17780;17781;17782;17783 17783 4 FNISTDRR DTKSKVTLLEGDHVRFNISTDRRDKLERAT LEGDHVRFNISTDRRDKLERATNIEVLSNT R F N R R D 0 2 1 1 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 8 1 1007.5148 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0 Q9GZV0 287 294 CSDE1;UNR Cold shock domain-containing protein E1 yes no 3 0.010526 50.127 1 2.898 3.2019 NaN 1 Median 2.898 3.2019 NaN 1 0 Median NaN NaN NaN 0 0 Median 22337000 4288000 18049000 22337000 4288000 18049000 0 0 0 4329 42 4446 11390 17784 17784 1 FNLILR LPPEKELAMPGEDLKFNLILRQPMILEKGQ LAMPGEDLKFNLILRQPMILEKGQRFTLRD K F N L R Q 0 1 1 0 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 6 0 774.47521 P49411 P49411 406 411 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.010919 136.29 2 1.8239 2.1325 5.0817 2 Median 1.8239 2.1325 5.0817 2 0 Median NaN NaN NaN 0 0 Median 531580000 184360000 347220000 531580000 184360000 347220000 0 0 0 4330 1580 4447 11391;11392 17785;17786 17785 2 FNLTGLNEQVPHYR NEFFCEVDEDYIQDKFNLTGLNEQVPHYRQ KFNLTGLNEQVPHYRQALDMILDLEPDEEL K F N Y R Q 0 1 2 0 0 1 1 1 1 0 2 0 0 1 1 0 1 0 1 1 0 0 14 0 1686.8478 N0E4C7;Q5SRQ6;P67870;N0E466;Q5SRQ3;N0E472;A0A0G2JM12;N0E650;N0E638;N0E6J1;B4DUJ4;N0E644;A0A0G2JM58 N0E4C7 34 47 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-1072;CSNK2B-LY6G5B-560;CSNK2B-LY6G5B-562 Casein kinase II subunit beta yes no 3 2.8778E-05 72.681 2 1 1.055 1.0847 52.18 3 Median 1.0722 1.136 6.534 2 0 Median 0.5378 0.46176 NaN 1 0 Median 74597000 34687000 39910000 66442000 29782000 36660000 8154900 4905300 3249600 4331 1358 4448 11393;11394;11395 17787;17788;17789;17790;17791;17792 17789 6 FNLTYVSHDGDDK HQCATIQLDFQLPIRFNLTYVSHDGDDKKR IRFNLTYVSHDGDDKKRPVIVHRAILGSVE R F N D K K 0 0 1 3 0 0 0 1 1 0 1 1 0 1 0 1 1 0 1 1 0 0 13 0 1509.6736 Q5M7Z9;B2RDX5;Q53GX7;P26639;B4DKZ9;B3KTN2 Q5M7Z9 571 583 TARS Threonine--tRNA ligase, cytoplasmic yes no 3 0.04548 28.812 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7925000 0 7925000 7925000 0 7925000 0 0 0 4332 892 4449 11396 17793 17793 1 FNNFLK RAFREEAIKFSEEQRFNNFLKALQEKVEIK AIKFSEEQRFNNFLKALQEKVEIKQLNHFW R F N L K A 0 0 2 0 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 6 0 781.41227 P13010;Q53T09 P13010 655 660 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.036258 126.07 2 0.37748 0.44708 2.4197 2 Median 0.37748 0.44708 2.4197 2 0 Median NaN NaN NaN 0 0 Median 1183900000 870490000 313380000 1183900000 870490000 313380000 0 0 0 4333 1476 4450 11397;11398 17794;17795;17796;17797 17795 4 FNPFVTSDR ______________________________ ______________________________ K F N D R S 0 1 1 1 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 1 0 0 9 0 1081.5193 Q6IBH6;P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KTJ8;A0A024RBF6;J3KSS0;E5RIT6;Q9UNX3;E5RHH1 Q6IBH6 3 11 RPL26;hCG_26523;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 no no 2 2.5787E-05 113.26 2 2 0.84221 0.99326 34.969 3 Plateau 0.83717 0.98765 0.80105 2 0 Median 0.62388 0.53901 NaN 1 0 Median 1656700000 924850000 731850000 1500400000 806960000 693410000 156320000 117880000 38440000 4334 1629;1214 4451 11399;11400;11401;11402 17798;17799;17800;17801;17802;17803;17804;17805 17800 8 FNPIETFLLGSCASDR ICSMTWGFDSISSVKFNPIETFLLGSCASD NPIETFLLGSCASDRNIVLYDMRQATPLKK K F N D R N 1 1 1 1 1 0 1 1 0 1 2 0 0 2 1 2 1 0 0 0 0 0 16 0 1825.8669 A0A087WT20;Q9NV06;A0A087X1F8 A0A087WT20 356 371 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.00015523 72.089 2 0.84301 0.88799 4.3541 2 Median 0.84301 0.88799 4.3541 2 0 Median NaN NaN NaN 0 0 Median 64585000 35052000 29534000 64585000 35052000 29534000 0 0 0 4335 402 4452 11403;11404 17806;17807 17807 2 FNQAQSGNIQSTVMLDK SCLKEERKILENAQRFNQAQSGNIQSTVML QAQSGNIQSTVMLDKQKELDSKVRNVKDKV R F N D K Q 1 0 2 1 0 3 0 1 0 1 1 1 1 1 0 2 1 0 0 1 0 0 17 0 1879.9098 J3KPM9;P42224;E7EPD2;D2KFR9;E7ENM1;A5D905 J3KPM9 124 140 STAT1 Signal transducer and activator of transcription;Signal transducer and activator of transcription 1-alpha/beta yes no 2 2.6212E-07 85.554 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5646900 0 5646900 5646900 0 5646900 0 0 0 4336 1326 4453 11405;11406 17808;17809;17810 17808 1002 3 FNQLVEQYK QVSRKKAKGNKTETRFNQLVEQYKQKLLGP NKTETRFNQLVEQYKQKLLGPSKGAPLAKR R F N Y K Q 0 0 1 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1167.5924 A0A024R753;Q9NW13 A0A024R753 730 738 RBM28 RNA-binding protein 28 yes no 2 8.446E-23 167.24 3 1 1.1087 0.90867 NaN 1 Median NaN NaN NaN 0 0 Median 1.1087 0.90867 NaN 1 0 Median 36820000 2487900 34332000 31797000 0 31797000 5023300 2487900 2535400 4337 214 4454 11407;11408;11409;11410 17811;17812;17813;17814 17811 4 FNQTYQLAHGTAEEK PSTEAVALVLEEMWKFNQTYQLAHGTAEEK FNQTYQLAHGTAEEKMPVWYIMDEFGSRIQ K F N E K M 2 0 1 0 0 2 2 1 1 0 1 1 0 1 0 0 2 0 1 0 0 0 15 0 1735.8166 A0A024R4U3;Q14166 A0A024R4U3 173 187 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 2;3 8.3378E-07 95.417 2 1.3949 1.4607 NaN 1 Median 1.3949 1.4607 NaN 1 0 Median NaN NaN NaN 0 0 Median 15162000 4538200 10624000 15162000 4538200 10624000 0 0 0 4338 161 4455 11411;11412 17815;17816;17817 17817 3 FNQVLGDDEK KNLPDPGKAQDFVKKFNQVLGDDEKLRSQL DFVKKFNQVLGDDEKLRSQLELLISPTCSC K F N E K L 0 0 1 2 0 1 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1163.5459 G1UI16;Q29RF7 G1UI16 559 568 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.0043374 61.65 1 0.76437 0.79369 NaN 1 Median 0.76437 0.79369 NaN 1 0 Median NaN NaN NaN 0 0 Median 11391000 6135000 5256200 11391000 6135000 5256200 0 0 0 4339 1270 4456 11413 17818 17818 1 FNSVAGHFFFPLLQR SKGGPRQGPAGSPSRFNSVAGHFFFPLLQR FNSVAGHFFFPLLQRFDRPLVTFDLLGEDQ R F N Q R F 1 1 1 0 0 1 0 1 1 0 2 0 0 4 1 1 0 0 0 1 0 0 15 0 1778.9257 B3KMG2;Q9Y4R8 B3KMG2 215 229 TELO2 Telomere length regulation protein TEL2 homolog yes no 3 0.0038197 48.704 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3486000 0 3486000 3486000 0 3486000 0 0 0 4340 904 4457 11414 17819 17819 1 FNTGPVGK QIRMCKDLKHLIYYRFNTGPVGKGPGCGFW KHLIYYRFNTGPVGKGPGCGFWAAGWRVWL R F N G K G 0 0 1 0 0 0 0 2 0 0 0 1 0 1 1 0 1 0 0 1 0 0 8 0 818.42865 Q6P2Q9;I3L0J9 Q6P2Q9 616 623 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0071364 84.244 2 0.78199 0.86071 1.3931 2 Median 0.78199 0.86071 1.3931 2 0 Median NaN NaN NaN 0 0 Median 99324000 50497000 48827000 99324000 50497000 48827000 0 0 0 4341 1854 4458 11415;11416 17820;17821;17822 17822 3 FNTTSVIK EPRGNEEAQIFRPLKFNTTSVIKIAVEPVN QIFRPLKFNTTSVIKIAVEPVNPSELPKML K F N I K I 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 8 0 908.49673 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 533 540 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0088675 76.774 1 0.8865 0.99115 NaN 1 Median 0.8865 0.99115 NaN 1 0 Median NaN NaN NaN 0 0 Median 106050000 60460000 45592000 106050000 60460000 45592000 0 0 0 4342 794 4459 11417 17823;17824 17823 2 FNVEDGEIVQQVR WALGVVPFSHVNIVKFNVEDGEIVQQVRVS VKFNVEDGEIVQQVRVSTPWLQHLSGACGV K F N V R V 0 1 1 1 0 2 2 1 0 1 0 0 0 1 0 0 0 0 0 3 0 0 13 0 1531.7631 Q8N766 Q8N766 202 214 EMC1 ER membrane protein complex subunit 1 yes yes 2 7.7297E-05 94.465 2 2 0.63796 0.69213 13.376 4 Linear 0.6403 0.67845 7.6599 2 0 Median 0.63796 0.54763 4.3801 2 0 Median 55811000 32313000 23499000 48060000 27815000 20245000 7751100 4497500 3253600 4343 1913 4460 11418;11419;11420;11421 17825;17826;17827;17828;17829;17830;17831 17830 7 FNVELIVQCIR PDGGKIPKDILDEEKFNVELIVQCIRLSEM DEEKFNVELIVQCIRLSEMPQTHHHALLLL K F N I R L 0 1 1 0 1 1 1 0 0 2 1 0 0 1 0 0 0 0 0 2 0 0 11 0 1389.7439 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1283 1293 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00022817 91.584 2 2 1.1045 1.0178 19.137 4 Median 1.2167 1.218 7.2083 2 0 Median 1.054 0.88191 2.0712 2 0 Median 32482000 14214000 18268000 21788000 9412200 12376000 10694000 4802200 5891600 4344 897 4461 11422;11423;11424;11425 17832;17833;17834;17835;17836;17837;17838;17839 17836 8 FNVLLTTYEYIIK PAARRAFVPQLRSGKFNVLLTTYEYIIKDK GKFNVLLTTYEYIIKDKHILAKIRWKYMIV K F N I K D 0 0 1 0 0 0 1 0 0 2 2 1 0 1 0 0 2 0 2 1 0 0 13 0 1615.8861 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8;A0A0U1RQE1;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 A7E2E1 853 865 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.0001172 88.441 2 0.71103 0.72704 5.8448 2 Median 0.71103 0.72704 5.8448 2 0 Median NaN NaN NaN 0 0 Median 18414000 9983800 8430200 18414000 9983800 8430200 0 0 0 4345 695;1595 4462 11426;11427 17840;17841;17842;17843;17844;17845 17845 6 FNVWDTAGQEK EVHPLVFHTNRGPIKFNVWDTAGQEKFGGL GPIKFNVWDTAGQEKFGGLRDGYYIQEMGI K F N E K F 1 0 1 1 0 1 1 1 0 0 0 1 0 1 0 0 1 1 0 1 0 0 11 0 1293.599 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 61 71 RAN GTP-binding nuclear protein Ran yes no 2 3.2449E-10 132.88 2 2 1.9153 2.1555 41.732 4 Linear 1.8912 2.126 0.88735 2 0 Median 1.3035 1.0409 11.136 2 0 Median 184280000 67899000 116380000 145380000 51153000 94227000 38902000 16745000 22156000 4346 1082 4463 11428;11429;11430;11431 17846;17847;17848;17849;17850;17851;17852;17853 17847 8 FNYGFEYLGVQDK TDVLQQLSIQMANAKFNYGFEYLGVQDKLV AKFNYGFEYLGVQDKLVQTPLTDRCYLTMT K F N D K L 0 0 1 1 0 1 1 2 0 0 1 1 0 2 0 0 0 0 2 1 0 0 13 0 1578.7355 Q14204 Q14204 1866 1878 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0017464 73.781 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4362400 0 4362400 4362400 0 4362400 0 0 0 4347 1729 4464 11432 17854;17855;17856 17855 3 FNYSVQEESDTCLGGK ANAEEEFFYEKAILKFNYSVQEESDTCLGG NYSVQEESDTCLGGKWSFDDVPMTPLRTVM K F N G K W 0 0 1 1 1 1 2 2 0 0 1 1 0 1 0 2 1 0 1 1 0 0 16 0 1832.7887 Q9P287 Q9P287 264 279 BCCIP BRCA2 and CDKN1A-interacting protein yes yes 2 1.5079E-08 96.64 2 2 2.3522 1.8905 5.8376 2 Median NaN NaN NaN 0 0 Median 2.3522 1.8905 5.8376 2 0 Median 14829000 2152200 12677000 9042500 0 9042500 5786600 2152200 3634400 4348 2094 4465 11433;11434;11435;11436 17857;17858;17859;17860;17861 17857 5 FPASVPTGAQDLISK SHNETYRRIVKVDLKFPASVPTGAQDLISK FPASVPTGAQDLISKLLRHNPSERLPLAQV K F P S K L 2 0 0 1 0 1 0 1 0 1 1 1 0 1 2 2 1 0 0 1 0 0 15 0 1529.809 B2RC06 B2RC06 292 306 yes yes 2 2.9997E-22 146.79 2 2 1.5107 1.5237 20.4 4 Median 1.0822 1.2768 0.33571 2 0 Median 2.1123 1.8179 0.30284 2 0 Median 1060900000 484010000 576860000 826680000 407860000 418810000 234190000 76143000 158050000 4349 881 4466 11437;11438;11439;11440 17862;17863;17864;17865;17866;17867;17868 17862 7 FPCLEEK GSRALQLLQMYYEGRFPCLEEKVLETPQEI LQMYYEGRFPCLEEKVLETPQEIHTVSSEA R F P E K V 0 0 0 0 1 0 2 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 7 0 921.4266 Q9H0A0;A0A087WV29 Q9H0A0 656 662 NAT10 N-acetyltransferase 10 yes no 2 0.030461 68.7 1 2 1.3873 1.0909 8.0684 3 Median 0.86876 0.99641 NaN 1 0 Median 1.4216 1.13 4.971 2 0 Median 200250000 100560000 99688000 167150000 86229000 80917000 33104000 14333000 18771000 4350 2023 4467 11441;11442;11443 17869;17870;17871;17872 17870 4 FPDEDEILEK DIMLGNKKKKKKNVKFPDEDEILEKDEALE KKNVKFPDEDEILEKDEALEDEDNKKDDGI K F P E K D 0 0 0 2 0 0 3 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 10 0 1233.5765 Q6IBR8;B5BU01;P20042;Q96I16 Q6IBR8 133 142 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 2 0.012101 51.092 1 1.6574 1.734 NaN 1 Median 1.6574 1.734 NaN 1 0 Median NaN NaN NaN 0 0 Median 19362000 6823900 12538000 19362000 6823900 12538000 0 0 0 4351 1073 4468 11444 17873 17873 1 FPDLTVELNR LKQVISLQTKNPEGRFPDLTVELNRWDTAF NPEGRFPDLTVELNRWDTAFDHEKARKTGL R F P N R W 0 1 1 1 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 10 0 1202.6295 P52701;A0A087WWJ1;Q1L838 P52701 902 911 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.023306 53.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5125500 5125500 0 5125500 5125500 0 0 0 0 4352 1601 4469 11445 17874 17874 1 FPEILATLR SCSVDNTVVIWNAVKFPEILATLRGHSGLV IWNAVKFPEILATLRGHSGLVKGLTWDPVG K F P L R G 1 1 0 0 0 0 1 0 0 1 2 0 0 1 1 0 1 0 0 0 0 0 9 0 1058.6124 B4DSW6;A8K194;P54198 B4DSW6 119 127 HIRA Protein HIRA yes no 2 0.0049758 71.692 2 1 0.78274 0.75237 56.095 2 Median 0.48623 0.50602 NaN 1 0 Median 1.2601 1.1186 NaN 1 0 Median 7524300 5608700 1915600 6676200 5264700 1411500 848140 344070 504070 4353 702 4470 11446;11447;11448 17875;17876;17877;17878 17877 4 FPELNYQLK KTGVQFTTKVRLLVKFPELNYQLKIKVCID VRLLVKFPELNYQLKIKVCIDKDSGDVAAL K F P L K I 0 0 1 0 0 1 1 0 0 0 2 1 0 1 1 0 0 0 1 0 0 0 9 0 1150.6023 G8JLH9;B4DNP0;B7ZA24;B4DVR6;B5BTZ6;P40763 G8JLH9 257 265 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 2 0.020213 58.716 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18807000 0 18807000 18807000 0 18807000 0 0 0 4354 1015 4471 11449;11450 17879;17880;17881 17879 3 FPEVIINFPDPAQK IIGQKGERIREIRDKFPEVIINFPDPAQKS KFPEVIINFPDPAQKSDIVQLRGPKNEVEK K F P Q K S 1 0 1 1 0 1 1 0 0 2 0 1 0 2 3 0 0 0 0 1 0 0 14 0 1613.8453 A0A024R4E5;Q00341;B2R5V9;H0Y394;Q6ZS03;Q96CF6;Q6ZN49;H7BZC3 A0A024R4E5 537 550 HDLBP Vigilin yes no 2 1.907E-21 147.26 2 1 1.8639 1.8776 31.002 3 Median 1.8693 1.9322 4.0551 2 0 Median 1.3655 1.132 NaN 1 0 Median 45203000 15805000 29398000 43623000 14984000 28639000 1580200 821410 758820 4355 154 4472 11451;11452;11453 17882;17883;17884;17885;17886 17883 5 FPGEFMK ESKNGKKIGVFSKDKFPGEFMKSWNDCLNK IGVFSKDKFPGEFMKSWNDCLNKEGFDKID K F P M K S 0 0 0 0 0 0 1 1 0 0 0 1 1 2 1 0 0 0 0 0 0 0 7 0 854.39966 Q9Y5B9;Q0VGA3 Q9Y5B9 142 148 SUPT16H FACT complex subunit SPT16 yes no 2 0.025137 54.205 1 1.0211 1.1429 NaN 1 Median 1.0211 1.1429 NaN 1 0 Median NaN NaN NaN 0 0 Median 83630000 45930000 37700000 83630000 45930000 37700000 0 0 0 4356 2148 4473 11454 17887 17887 1990 1 FPGQLNADLR HLVSATMSGVTTCLRFPGQLNADLRKLAVN TTCLRFPGQLNADLRKLAVNMVPFPRLHFF R F P L R K 1 1 1 1 0 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1129.588 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;G3V2A3;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;M0R2D3;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2;A5D907;A5D906;A1L195;A6NNZ2;A1L196;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00;P04350;B4DE77;B4DJ43;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 Q5JP53 224 233 TUBB;XTP3TPATP1;TUBB3;TUBB2C;TUBB4B;TUBB4A;TUBB2A;TUBB2B;DKFZp566F223;TUBB1;TUBB8;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 4.533E-41 199.89 2 2 1.2599 1.2291 35.956 4 Median 1.413 1.6517 0.79487 2 0 Median 1.0871 0.88786 4.9904 2 0 Median 567540000 229460000 338070000 538760000 215570000 323190000 28779000 13897000 14882000 4357 1452;1660;1723;1441;2004;502;1778 4474 11455;11456;11457;11458 17888;17889;17890;17891;17892;17893;17894;17895;17896;17897;17898;17899;17900;17901;17902;17903 17891 16 FPGQLNADLRK HLVSATMSGVTTCLRFPGQLNADLRKLAVN TCLRFPGQLNADLRKLAVNMVPFPRLHFFM R F P R K L 1 1 1 1 0 1 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 11 1 1257.683 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;G3V2A3;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;M0R2D3;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2;A5D907;A5D906;A1L195;A6NNZ2;A1L196;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00;P04350;B4DE77;B4DJ43;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 Q5JP53 224 234 TUBB;XTP3TPATP1;TUBB3;TUBB2C;TUBB4B;TUBB4A;TUBB2A;TUBB2B;DKFZp566F223;TUBB1;TUBB8;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-6 chain no no 3 0.00011435 77.062 2 1.6573 1.9897 1.0147 2 Median 1.6573 1.9897 1.0147 2 0 Median NaN NaN NaN 0 0 Median 708930000 268080000 440850000 708930000 268080000 440850000 0 0 0 4358 1452;1660;1723;1441;2004;502;1778 4475 11459;11460 17904;17905;17906;17907 17904 4 FPHLFTGK GAKEALKEAVILPIKFPHLFTGKRTPWRGI AVILPIKFPHLFTGKRTPWRGILLFGPPGT K F P G K R 0 0 0 0 0 0 0 1 1 0 1 1 0 2 1 0 1 0 0 0 0 0 8 0 945.50724 A0A024R705;Q9UN37;I3L4J1;A8K5D8;A8K4G7;A0A024R2C5;O75351 A0A024R705 149 156 VPS4A;VPS4B Vacuolar protein sorting-associated protein 4A;Vacuolar protein sorting-associated protein 4B yes no 3 0.047824 31.422 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6263000 0 6263000 6263000 0 6263000 0 0 0 4359 213 4476 11461 17908 17908 1 FPIDYPYSPPAFR ______________________________ LKFPIDYPYSPPAFRFLTKMWHPNIYETGD K F P F R F 1 1 0 1 0 0 0 0 0 1 0 0 0 2 4 1 0 0 2 0 0 0 13 0 1568.7664 U3KQP9;U3KQ77;U3KPV8;A0A024R1Z1;P49427 U3KQP9 8 20 CDC34 Ubiquitin-conjugating enzyme E2 R1 yes no 2 0.0060647 55.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5169300 0 5169300 5169300 0 5169300 0 0 0 4360 97 4477 11462 17909;17910 17909 2 FPLAGLEENYCR WSATSPHVPKFSPEKFPLAGLEENYCRNPD PEKFPLAGLEENYCRNPDNDENGPWCYTTD K F P C R N 1 1 1 0 1 0 2 1 0 0 2 0 0 1 1 0 0 0 1 0 0 0 12 0 1467.6816 CON__P06868;A0A0F7G8J1 CON__P06868 149 160 yes no 2 0.0015987 76.228 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26979000 26979000 0 11661000 11661000 0 15318000 15318000 0 + 4361 1157 4478 11463;11464;11465 17911;17912;17913 17912 3 FPLPSIETK KVITGALQCLIWVLRFPLPSIETKAEQLTK LIWVLRFPLPSIETKAEQLTKHLFLLLKDY R F P T K A 0 0 0 0 0 0 1 0 0 1 1 1 0 1 2 1 1 0 0 0 0 0 9 0 1030.5699 O75691 O75691 2143 2151 UTP20 Small subunit processome component 20 homolog yes yes 2 0.035134 43.982 1 1.0549 1.0851 NaN 1 Median 1.0549 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median 32352000 16924000 15428000 32352000 16924000 15428000 0 0 0 4362 1412 4479 11466 17914 17914 1 FPLQEENSVTHHEVK KIYSYMSPNKCSGMRFPLQEENSVTHHEVK FPLQEENSVTHHEVKCQGKPLAGIYRKREE R F P V K C 0 0 1 0 0 1 3 0 2 0 1 1 0 1 1 1 1 0 0 2 0 0 15 0 1792.8744 E3VVS3;A0A0C4DFR3;Q9NQR1;C9JKQ0 E3VVS3 38 52 SETD8 N-lysine methyltransferase SETD8 yes no 3 0.059303 14.004 1 3.2905 2.6297 NaN 1 Median NaN NaN NaN 0 0 Median 3.2905 2.6297 NaN 1 0 Median 2909300 712690 2196700 0 0 0 2909300 712690 2196700 4363 505 4480 11467 17915 17915 1 FPLTTESAMK SAPRRNKLDHYAIIKFPLTTESAMKKIEDN YAIIKFPLTTESAMKKIEDNNTLVFIVDVK K F P M K K 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 2 0 0 0 0 0 10 0 1123.5583 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 81 90 RPL23A 60S ribosomal protein L23a yes no 2 1.828E-16 154.28 4 7 0.9645 0.95682 27.321 8 Median 0.83415 1.003 3.8953 3 0 Plateau 1.1471 0.91034 33.54 5 0 Median 6056300000 3377100000 2679100000 5658500000 3113800000 2544700000 397780000 263290000 134490000 4364 796 4481;4482 11468;11469;11470;11471;11472;11473;11474;11475;11476;11477;11478 17916;17917;17918;17919;17920;17921;17922;17923;17924;17925;17926;17927;17928;17929;17930;17931;17932;17933;17934;17935;17936 17917 642 21 FPNLVDPWTPHLYAR VRSNLMVATGDLAIRFPNLVDPWTPHLYAR FPNLVDPWTPHLYARLRDPAQQVRKTAGLV R F P A R L 1 1 1 1 0 0 0 0 1 0 2 0 0 1 3 0 1 1 1 1 0 0 15 0 1824.9311 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1086 1100 NCAPD2 Condensin complex subunit 1 yes no 3 0.0003009 66.246 1 2 1.4692 1.2693 0.51838 2 Median NaN NaN NaN 0 0 Median 1.4692 1.2693 0.51838 2 0 Median 113930000 69254000 44680000 37171000 37171000 0 76763000 32082000 44680000 4365 908 4483 11479;11480;11481 17937;17938;17939 17939 3 FPPVVFYTPK QTRIKIGLNSKMPSRFPPVVFYTPKELGGL KMPSRFPPVVFYTPKELGGLGMLSMGHVLI R F P P K E 0 0 0 0 0 0 0 0 0 0 0 1 0 2 3 0 1 0 1 2 0 0 10 0 1193.6485 Q6P2Q9;B4DK16;I3L3Z8 Q6P2Q9 1311 1320 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 5.6389E-05 85.731 3 0.937 0.92116 NaN 1 Median 0.937 0.92116 NaN 1 0 Median NaN NaN NaN 0 0 Median 36448000 24603000 11845000 36448000 24603000 11845000 0 0 0 4366 1854 4484 11482;11483;11484 17940;17941;17942;17943;17944 17944 5 FPQLDSTSFANSR TTVGSAEKRAYLQARFPQLDSTSFANSRDT ARFPQLDSTSFANSRDTSFEQHVLWHTGGK R F P S R D 1 1 1 1 0 1 0 0 0 0 1 0 0 2 1 3 1 0 0 0 0 0 13 0 1468.6947 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1710 1722 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 4.4945E-06 102.4 2 1 1.1625 1.1193 90.537 2 Median 1.9428 2.1232 NaN 1 0 Median 0.69557 0.59009 NaN 1 0 Median 52611000 11142000 41469000 49528000 9627700 39900000 3083300 1514600 1568700 4367 587 4485 11485;11486;11487 17945;17946;17947 17945 2 FPSINHD RSGSSSPDSEITELKFPSINHD________ DSEITELKFPSINHD_______________ K F P H D - 0 0 1 1 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 7 0 828.37662 P17812;B4E1E0 P17812 585 591 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.028512 88.35 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29651000 0 0 29651000 0 0 0 0 0 4368 1494 4486 11488;11489 17948;17949 17948 2 FPSLLTHNENMVAK QIPRILGPGLNKAGKFPSLLTHNENMVAKV KFPSLLTHNENMVAKVDEVKSTIKFQMKKV K F P A K V 1 0 2 0 0 0 1 0 1 0 2 1 1 1 1 1 1 0 0 1 0 0 14 0 1599.8079 P62906;Q1JQ76;A0A024RCW3 P62906 134 147 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2;3 3.9502E-05 75.764 3 1 1.3357 1.5613 65.487 3 Median 1.362 1.5794 1.6341 2 0 Median 0.65474 0.50812 NaN 1 0 Median 515020000 229290000 285730000 500680000 220470000 280200000 14344000 8821800 5522700 4369 1651 4487 11490;11491;11492;11493 17950;17951;17952;17953;17954;17955 17953 1430 6 FPSTICTESFQFLDR SYQLSQTYYRIFTWRFPSTICTESFQFLDR FPSTICTESFQFLDRMRAAGKLDQPDRFSF R F P D R M 0 1 0 1 1 1 1 0 0 1 1 0 0 3 1 2 2 0 0 0 0 0 15 0 1846.856 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1515 1529 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0036814 51.286 2 1.5935 1.5892 NaN 1 Median 1.5935 1.5892 NaN 1 0 Median NaN NaN NaN 0 0 Median 10841000 3121900 7719300 10841000 3121900 7719300 0 0 0 4370 1699 4488 11494;11495 17956;17957 17957 2 FPTLTNINENNPTLLNPIK YSTRMILLTLAGQPRFPTLTNINENNPTLL TNINENNPTLLNPIKRLAAGSLFAGFLITN R F P I K R 0 0 5 0 0 0 1 0 0 2 3 1 0 1 3 0 3 0 0 0 0 0 19 0 2152.1528 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A0A0N7BBR4 109 127 ND5;NADH5;nd5;ndh5;MT-ND5 NADH-ubiquinone oxidoreductase chain 5 yes no 2 1.1607E-05 71.548 2 1.1727 1.1945 2.4572 2 Median 1.1727 1.1945 2.4572 2 0 Median NaN NaN NaN 0 0 Median 16568000 7115800 9451900 16568000 7115800 9451900 0 0 0 4371 0 4489 11496;11497 17958;17959;17960 17960 3 FPTQISLAQLR NSQPPSGLSSNQLSKFPTQISLAQLRLQHM QLSKFPTQISLAQLRLQHMQQQQPPPRLIN K F P L R L 1 1 0 0 0 2 0 0 0 1 2 0 0 1 1 1 1 0 0 0 0 0 11 0 1272.719 A0A024R784;O15164;B4DYZ9;Q6ZSA6 A0A024R784 459 469 TRIM24 Transcription intermediary factor 1-alpha yes no 2 0.000286 89.08 1 2 1.3094 1.1335 19.628 3 Median 0.76232 0.81297 NaN 1 0 Median 1.3302 1.1419 1.0371 2 0 Median 30342000 15488000 14853000 24581000 13054000 11527000 5760900 2434600 3326200 4372 217 4490 11498;11499;11500 17961;17962;17963;17964;17965;17966 17961 6 FPVTDAVNK QACTGGIIDPSTGERFPVTDAVNKGLVDKI PSTGERFPVTDAVNKGLVDKIMVDRINLAQ R F P N K G 1 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 2 0 0 9 0 989.5182 Q15149;D3DWL0;Q96IE3 Q15149 4467 4475 PLEC;PLEC1 Plectin yes no 2 0.00097174 91.783 3 1.8881 2.076 18.378 2 Median 1.8881 2.076 18.378 2 0 Median NaN NaN NaN 0 0 Median 128680000 68360000 60321000 128680000 68360000 60321000 0 0 0 4373 1754 4491 11501;11502;11503 17967;17968;17969;17970 17967 4 FQASQGENLEGK HFRNPQRRIRRWLRRFQASQGENLEGKYLS LRRFQASQGENLEGKYLSFEAEEKLAEWVL R F Q G K Y 1 0 1 0 0 2 2 2 0 0 1 1 0 1 0 1 0 0 0 0 0 0 12 0 1306.6153 Q7Z3K3;B4DSK8 Q7Z3K3 1010 1021 POGZ Pogo transposable element with ZNF domain yes no 2 0.05825 31.286 1 1.2407 1.0358 NaN 1 Median NaN NaN NaN 0 0 Median 1.2407 1.0358 NaN 1 0 Median 1801300 923280 878010 0 0 0 1801300 923280 878010 4374 1874 4492 11504 17971 17971 1 FQAVVALAVGR LFTRIVQQKALPLTRFQAVVALAVGRLADK PLTRFQAVVALAVGRLADKSVLVCKNAIQL R F Q G R L 3 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 3 0 0 11 0 1129.6608 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 402 412 NCAPD2 Condensin complex subunit 1 yes no 2 1.3191E-05 107.57 4 1 0.92761 1.0686 6.3984 3 Median 0.9065 1.0416 3.6201 2 0 Median 1.3638 1.1529 NaN 1 0 Median 237200000 123170000 114030000 206910000 111080000 95824000 30291000 12087000 18204000 4375 908 4493 11505;11506;11507;11508;11509 17972;17973;17974;17975;17976;17977;17978;17979;17980 17976 9 FQDELESGK EKRAKLREIELKVMKFQDELESGKRPKKPG ELKVMKFQDELESGKRPKKPGQSFQEQVEH K F Q G K R 0 0 0 1 0 1 2 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1051.4822 O15042;E7ET15;H7C4V2 O15042 854 862 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.011112 62.582 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4376 1374 4494 11510 17981 17981 1 FQDGAIR AKFRQFWGSRSELRRFQDGAIREAVVWEAA GSRSELRRFQDGAIREAVVWEAASMSQKRL R F Q I R E 1 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 7 0 805.40825 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 592 598 NOL6 Nucleolar protein 6 yes no 2 0.0099852 115.78 1 0.95417 1.0648 NaN 1 Median 0.95417 1.0648 NaN 1 0 Median NaN NaN NaN 0 0 Median 85199000 43466000 41733000 85199000 43466000 41733000 0 0 0 4377 2038 4495 11511 17982;17983 17983 2 FQDGVLEPDFPR CQGKTYLFKGSQYWRFQDGVLEPDFPRNIS YWRFQDGVLEPDFPRNISDGFGGIPDDAHL R F Q P R N 0 1 0 2 0 1 1 1 0 0 1 0 0 2 2 0 0 0 0 1 0 0 12 0 1418.683 CON__Q3ZBS7 CON__Q3ZBS7 226 237 yes yes 2 0.0005694 78.653 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 4378 1173 4496 11512 17984 17984 1 FQDLGAAYEVLSDSEK LHPDRNPDDPQAQEKFQDLGAAYEVLSDSE QDLGAAYEVLSDSEKRKQYDTYGEEGLKDG K F Q E K R 2 0 0 2 0 1 2 1 0 0 2 1 0 1 0 2 0 0 1 1 0 0 16 0 1770.8312 Q9UBS4 Q9UBS4 67 82 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 2 0.0001839 72.496 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12067000 5024700 7042200 11294000 4251800 7042200 772820 772820 0 4379 2098 4497 11513;11514;11515;11516 17985;17986;17987;17988 17985 4 FQDTAEALAAFTALMEGK PEKANKIVKLKHFEKFQDTAEALAAFTALM TAEALAAFTALMEGKINKQLKKVLKKIVKE K F Q G K I 5 0 0 1 0 1 2 1 0 0 2 1 1 2 0 0 2 0 0 0 0 0 18 0 1912.9241 Q9Y2X3;B4DUY3 Q9Y2X3 50 67 NOP58 Nucleolar protein 58 yes no 2 9.7416E-40 156.17 2 2 1.0928 1.9698 73.346 4 Linear 1.6894 1.902 0.10998 2 0 Median 0.65917 0.53598 9.8805 2 0 Median 206940000 92629000 114310000 154570000 61078000 93493000 52367000 31551000 20816000 4380 2129 4498 11517;11518;11519;11520 17989;17990;17991;17992;17993;17994;17995;17996;17997 17992 1959 9 FQEAGELYNR KVFLHLADIYAKSEKFQEAGELYNRMLKRF AKSEKFQEAGELYNRMLKRFRQEKAVWIKY K F Q N R M 1 1 1 0 0 1 2 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 10 0 1225.5728 Q14690 Q14690 1707 1716 PDCD11 Protein RRP5 homolog yes yes 2 3.8479E-38 172.94 3 4 1.0582 1.2068 NaN 1 Median 1.0582 1.2068 NaN 1 0 Median NaN NaN NaN 0 0 Median 158880000 64260000 94622000 139760000 64260000 75503000 19119000 0 19119000 4381 1741 4499 11521;11522;11523;11524;11525;11526;11527 17998;17999;18000;18001;18002;18003;18004;18005 17999 8 FQEEMDTVMK WFGNTRVIKQSSLQKFQEEMDTVMKDPYKV SSLQKFQEEMDTVMKDPYKVVMKQSKLPMS K F Q M K D 0 0 0 1 0 1 2 0 0 0 0 1 2 1 0 0 1 0 0 1 0 0 10 0 1256.5417 Q5T0F3;Q13823 Q5T0F3 95 104 GNL2 Nucleolar GTP-binding protein 2 yes no 2 4.3944E-08 118.5 2 2.2905 2.3209 2.3171 2 Median 2.2905 2.3209 2.3171 2 0 Median NaN NaN NaN 0 0 Median 18382000 5830300 12552000 18382000 5830300 12552000 0 0 0 4382 1721 4500 11528;11529 18006;18007 18007 1554;1555 2 FQELLASPAYR SAAQRQQLLEEERTRFQELLASPAYRASPL ERTRFQELLASPAYRASPLVAIGQTLARQM R F Q Y R A 2 1 0 0 0 1 1 0 0 0 2 0 0 1 1 1 0 0 1 0 0 0 11 0 1293.6717 Q9NSI2 Q9NSI2 197 207 FAM207A Protein FAM207A yes yes 2 0.00072269 72.006 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4383 2067 4501 11530 18008 18008 1 FQETSDEFEAAR PNMKAMEKLESVRDKFQETSDEFEAARKRA RDKFQETSDEFEAARKRAKKAKQAFEQIKK K F Q A R K 2 1 0 1 0 1 3 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 12 0 1428.6157 Q14683;G8JLG1;V9GY57 Q14683 1038 1049 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 3.6901E-05 97.456 4 1 0.87436 0.90671 8.988 3 Median 0.84577 0.86122 7.2793 2 0 Median 1.1705 0.97845 NaN 1 0 Median 40751000 24173000 16577000 37230000 22649000 14581000 3520800 1524300 1996500 4384 1739 4502 11531;11532;11533;11534;11535 18009;18010;18011;18012;18013;18014;18015 18012 7 FQFLWGPR KYLEYKQVPSSDPPRFQFLWGPRAYAETSK PSSDPPRFQFLWGPRAYAETSKMKVLEFLA R F Q P R A 0 1 0 0 0 1 0 1 0 0 1 0 0 2 1 0 0 1 0 0 0 0 8 0 1049.5447 Q53G50;B2R8F3;O15479 Q53G50 271 278 MAGEB2 Melanoma-associated antigen B2 yes no 2 0.030389 62.717 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4385 861 4503 11536 18016 18016 1 FQFLYDVQVPIVDK DLARAVREAASKRSRFQFLYDVQVPIVDKI RFQFLYDVQVPIVDKIRTIAQAVYGAKDIE R F Q D K I 0 0 0 2 0 2 0 0 0 1 1 1 0 2 1 0 0 0 1 3 0 0 14 0 1709.9029 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 790 803 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.0014549 53.569 2 1.3188 1.3294 2.3509 2 Median 1.3188 1.3294 2.3509 2 0 Median NaN NaN NaN 0 0 Median 13250000 5348200 7902200 13250000 5348200 7902200 0 0 0 4386 418 4504 11537;11538 18017;18018 18018 2 FQFNLQDFR YSGIQELEDRRSQQRFQFNLQDFRCCAVLG RRSQQRFQFNLQDFRCCAVLGRGHFGKVLL R F Q F R C 0 1 1 1 0 2 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 9 0 1213.588 Q16513 Q16513 650 658 PKN2 Serine/threonine-protein kinase N2 yes yes 2 0.0056175 66.27 1 2.2354 2.2919 NaN 1 Median 2.2354 2.2919 NaN 1 0 Median NaN NaN NaN 0 0 Median 6535900 3154400 3381400 6535900 3154400 3381400 0 0 0 4387 1769 4505 11539 18019 18019 1 FQGEDTVVIASK LNESEVNRGDKYIAKFQGEDTVVIASKPYA IAKFQGEDTVVIASKPYAFDRVFQSSTSQE K F Q S K P 1 0 0 1 0 1 1 1 0 1 0 1 0 1 0 1 1 0 0 2 0 0 12 0 1292.6612 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89;Q6P164;Q2TA90;Q66K46 V9HW29 33 44 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 5.5712E-05 93.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7921400 0 7921400 7921400 0 7921400 0 0 0 4388 1186 4506 11540 18020 18020 1 FQGEYGSDPEERPPNLK EGDSKKKIIVSNKKRFQGEYGSDPEERPPN GEYGSDPEERPPNLKRPEDYEAVFVGNIDD R F Q L K R 0 1 1 1 0 1 3 2 0 0 1 1 0 1 3 1 0 0 1 0 0 0 17 1 1961.9119 A8K0P8;Q68CQ4;H7C2R4 A8K0P8 392 408 DIEXF Digestive organ expansion factor homolog yes no 3 9.3561E-05 49.535 1 1.6002 1.7835 NaN 1 Median 1.6002 1.7835 NaN 1 0 Median NaN NaN NaN 0 0 Median 11090000 4221100 6868400 11090000 4221100 6868400 0 0 0 4389 699 4507 11541 18021 18021 1 FQGQPDIYK EFNHAINYVNKIKNRFQGQPDIYKAFLEIL NKIKNRFQGQPDIYKAFLEILHTYQKEQRN R F Q Y K A 0 0 0 1 0 2 0 1 0 1 0 1 0 1 1 0 0 0 1 0 0 0 9 0 1094.5397 Q96ST3 Q96ST3 318 326 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0033698 71.501 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4390 1990 4508 11542 18022 18022 1 FQGVSLPVHLR AVHNLQPTQPSLIRRFQGVSLPVHLR____ LIRRFQGVSLPVHLR_______________ R F Q L R - 0 1 0 0 0 1 0 1 1 0 2 0 0 1 1 1 0 0 0 2 0 0 11 0 1251.7088 C9JG87;Q9NYK5 C9JG87 287 297 MRPL39 39S ribosomal protein L39, mitochondrial yes no 3 0.025442 32.329 3 0.84358 0.84219 NaN 1 Median 0.84358 0.84219 NaN 1 0 Median NaN NaN NaN 0 0 Median 16691000 4407300 12284000 16691000 4407300 12284000 0 0 0 4391 1134 4509 11543;11544;11545 18023;18024;18025 18024 3 FQHILR ______________________________ ______________________________ K F Q L R V 0 1 0 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 6 0 812.46571 P62269;A0A0G2JQH2;Q5GGW2 P62269 9 14 RPS18 40S ribosomal protein S18 yes no 2 0.035243 116.09 1 1.1709 1.3575 NaN 1 Median 1.1709 1.3575 NaN 1 0 Median NaN NaN NaN 0 0 Median 305370000 160710000 144660000 305370000 160710000 144660000 0 0 0 4392 1639 4510 11546 18026 18026 1 FQIEANFPR VIHDFLFSLKESPEKFQIEANFPRRVLPCI KESPEKFQIEANFPRRVLPCIPSEEWPNPP K F Q P R R 1 1 1 0 0 1 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 9 0 1120.5665 Q96CS3 Q96CS3 401 409 FAF2 FAS-associated factor 2 yes yes 2 0.00014296 107.66 2 1.2201 1.2609 NaN 1 Median 1.2201 1.2609 NaN 1 0 Median NaN NaN NaN 0 0 Median 55687000 15863000 39824000 55687000 15863000 39824000 0 0 0 4393 1961 4511 11547;11548 18027;18028;18029 18029 3 FQIGDYLDIAITPPNR GRKGTDDSMTLQSQKFQIGDYLDIAITPPN QIGDYLDIAITPPNRAPPP___________ K F Q N R A 1 1 1 2 0 1 0 1 0 3 1 0 0 1 2 0 1 0 1 0 0 0 16 0 1831.9468 H7BZW6;X6RAL5;O00422 H7BZW6 124 139 SAP18 Histone deacetylase complex subunit SAP18 yes no 2 6.6559E-26 150.11 2 1.2121 1.2872 0.038513 2 Median 1.2121 1.2872 0.038513 2 0 Median NaN NaN NaN 0 0 Median 62119000 30664000 31455000 62119000 30664000 31455000 0 0 0 4394 1314 4512 11549;11550 18030;18031;18032;18033 18032 4 FQIQDISVETEDNK NHRLTLGLIWTIILRFQIQDISVETEDNKE RFQIQDISVETEDNKEKKSAKDALLLWCQM R F Q N K E 0 0 1 2 0 2 2 0 0 2 0 1 0 1 0 1 1 0 0 1 0 0 14 0 1664.7893 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1;A4QPE4;O15020 D6W5C0 71 84 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2 2.0984E-06 106.49 2 2 1.1094 1.1747 50.442 3 Median 1.0758 1.1321 5.2234 2 0 Median 3.4184 2.7059 NaN 1 0 Median 77800000 37885000 39915000 65699000 36753000 28946000 12101000 1132100 10969000 4395 415;1372 4513 11551;11552;11553;11554 18034;18035;18036;18037;18038;18039;18040 18037 7 FQIYFDNCPLLTIPGR DLKVIVMSATLDAGKFQIYFDNCPLLTIPG QIYFDNCPLLTIPGRTHPVEIFYTPEPERD K F Q G R T 0 1 1 1 1 1 0 1 0 2 2 0 0 2 2 0 1 0 1 0 0 0 16 0 1952.9819 O43143 O43143 300 315 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 1.4847E-08 104.24 3 0.93173 1.1987 14.544 3 Plateau 0.93173 1.1987 14.544 3 0 Plateau NaN NaN NaN 0 0 Median 103310000 50792000 52514000 103310000 50792000 52514000 0 0 0 4396 1379 4514 11555;11556;11557 18041;18042;18043;18044;18045 18042 4 FQLFQK QMDVLQRKLREVSTKFQLFQKPANFEQRML RKLREVSTKFQLFQKPANFEQRMLDCKRVL K F Q Q K P 0 0 0 0 0 2 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 6 0 809.44357 P46939 P46939 1431 1436 UTRN Utrophin yes no 2 0.040796 107.15 1 1.0168 1.1363 NaN 1 Median 1.0168 1.1363 NaN 1 0 Median NaN NaN NaN 0 0 Median 95276000 47686000 47590000 95276000 47686000 47590000 0 0 0 4397 1574 4515 11558 18046 18046 1 FQLPVFLDSHFVYSFSPVAGPNK LCGPCSVQAVVLNDKFQLPVFLDSHFVYSF SHFVYSFSPVAGPNKLFIRLTEAPSAKVKL K F Q N K L 1 0 1 1 0 1 0 1 1 0 2 1 0 4 3 3 0 0 1 3 0 0 23 0 2595.3162 Q99549 Q99549 813 835 MPHOSPH8 M-phase phosphoprotein 8 yes yes 3 4.7714E-06 45.395 1 0.91929 1.014 NaN 1 Median 0.91929 1.014 NaN 1 0 Median NaN NaN NaN 0 0 Median 43802000 24604000 19198000 43802000 24604000 19198000 0 0 0 4398 1994 4516 11559 18047;18048 18047 2 FQNMLEFQTPELLR RCRPGICFRLFSRLRFQNMLEFQTPELLRM RFQNMLEFQTPELLRMPLQELCLHTKLLAP R F Q L R M 0 1 1 0 0 2 2 0 0 0 3 0 1 2 1 0 1 0 0 0 0 0 14 0 1764.8869 Q6ZMY0;Q9H6S0 Q6ZMY0 667 680 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 2 0.022351 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4399 1863 4517 11560 18049 18049 1719 1 FQPGETLTEILETPATSEQEAEHQR TILLNTKRLIVDVIRFQPGETLTEILETPA LETPATSEQEAEHQRAMQRRAIRDAKTPDK R F Q Q R A 2 1 0 0 0 3 6 1 1 1 2 0 0 1 2 1 4 0 0 0 0 0 25 0 2840.3464 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 A4QPB0 1398 1422 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 3 0.00063785 29.591 1 1 1.2394 1.1434 58.552 2 Median 1.744 1.7298 NaN 1 0 Median 0.8808 0.75576 NaN 1 0 Median 22134000 10002000 12132000 15871000 6589700 9281000 6263200 3412200 2851000 4400 352 4518 11561;11562 18050;18051 18050 2 FQPLFGDFAAEK LPKEKVPRGSGKKRKFQPLFGDFAAEKKNQ KRKFQPLFGDFAAEKKNQLELLRVMNSKKP K F Q E K K 2 0 0 1 0 1 1 1 0 0 1 1 0 3 1 0 0 0 0 0 0 0 12 0 1368.6714 Q15050 Q15050 254 265 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0023961 59.542 2 2 0.90633 0.98912 10.212 4 Linear 0.85283 0.97475 0.9135 2 0 Median 0.98303 0.82173 4.5199 2 0 Median 439900000 234220000 205670000 340120000 182620000 157500000 99775000 51602000 48174000 4401 1750 4519 11563;11564;11565;11566 18052;18053;18054;18055;18056;18057;18058;18059 18055 8 FQPPQVPDQAPAEAPTEK QWRNRQKNKRRCKNKFQPPQVPDQAPAEAP PQVPDQAPAEAPTEKTEVSPVPRTDSHEAR K F Q E K T 3 0 0 1 0 3 2 0 0 0 0 1 0 1 5 0 1 0 0 1 0 0 18 0 1948.9531 O43159;E9PPY3 O43159 202 219 RRP8 Ribosomal RNA-processing protein 8 yes no 2 7.3677E-05 50.843 2 2 0.9628 0.87826 26.493 4 Median 1.0454 1.1004 2.4668 2 0 Median 0.86332 0.69678 3.3083 2 0 Median 49531000 24192000 25340000 35014000 16215000 18799000 14517000 7977000 6540200 4402 1380 4520 11567;11568;11569;11570 18060;18061;18062;18063;18064 18062 5 FQQAVDAVEEFLR HAHKEEMIKINKGKRFQQAVDAVEEFLRRA KRFQQAVDAVEEFLRRAKGKDQTSSHNSSD R F Q L R R 2 1 0 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 13 0 1550.7729 D3DUE6;K7EMM8;D3DUE7;Q49A26;K7EQB2 D3DUE7 101 113 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2 4.0017E-06 129.89 1 2 1.9418 1.5835 15.692 3 Median 1.0988 1.219 NaN 1 0 Median 1.9533 1.5989 1.3718 2 0 Median 96962000 40665000 56297000 68101000 30450000 37652000 28861000 10215000 18646000 4403 1194;1193;1346 4521 11571;11572;11573 18065;18066;18067;18068;18069 18066 5 FQQAVDAVEEFLRR HAHKEEMIKINKGKRFQQAVDAVEEFLRRA RFQQAVDAVEEFLRRAKGKDQTSSHNSSDD R F Q R R A 2 2 0 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 14 1 1706.874 D3DUE6;K7EMM8;D3DUE7;Q49A26;K7EQB2 D3DUE7 101 114 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 3 0.0011629 53.754 2 2 1.8812 1.6714 1.1191 2 Median NaN NaN NaN 0 0 Median 1.8812 1.6714 1.1191 2 0 Median 29352000 3038000 26314000 19636000 0 19636000 9715600 3038000 6677500 4404 1194;1193;1346 4522 11574;11575;11576;11577 18070;18071;18072;18073;18074;18075 18074 6 FQSAAIGALQEASEAYLVGLFEDTNLCAIHAK RLVREIAQDFKTDLRFQSAAIGALQEASEA VGLFEDTNLCAIHAKRVTIMPKDIQLARRI R F Q A K R 7 0 1 1 1 2 3 2 1 2 4 1 0 2 0 2 1 0 1 1 0 0 32 0 3436.6973 K7EK07;B2R4P9;P84243;B2R6Y1;A8K4Y7 K7EK07 85 116 H3F3B;H3F3A Histone H3;Histone H3.3 yes no 3 3.0975E-31 96.748 3 2 0.94192 1.003 17.801 5 Median 0.96757 1.14 6.9832 3 0 Plateau 0.90793 0.79678 3.7918 2 0 Median 1692700000 894330000 798410000 1050200000 551610000 498620000 642500000 342720000 299790000 4405 827 4523 11578;11579;11580;11581;11582 18076;18077;18078;18079;18080;18081;18082;18083 18079 8 FQSDSSSYPTVDSNSLLGQSR ASPMLKSGMSPEQSRFQSDSSSYPTVDSNS SYPTVDSNSLLGQSRLETAESKEKMALPPQ R F Q S R L 0 1 1 2 0 2 0 1 0 0 2 0 0 1 1 7 1 0 1 1 0 0 21 0 2274.04 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1138 1158 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.003925 43.184 2 1.4224 1.4139 NaN 1 Median 1.4224 1.4139 NaN 1 0 Median NaN NaN NaN 0 0 Median 8458500 3520400 4938000 8458500 3520400 4938000 0 0 0 4406 619 4524 11583;11584 18084;18085 18084 2 FQSIVIGCALEDQK SACSSEVPHGPVDQKFQSIVIGCALEDQKK KFQSIVIGCALEDQKKIKRRLETLLRNIEN K F Q Q K K 1 0 0 1 1 2 1 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 14 0 1606.8025 B3KN59;B3KM36;O95816 B3KN59 155 168 BAG2 BAG family molecular chaperone regulator 2 yes no 2 0.00016295 74.611 2 2 1.0896 1.0743 15.035 3 Plateau 1.0896 1.0743 NaN 1 0 Median 1.0373 0.83339 4.7043 2 0 Median 41078000 23826000 17252000 29835000 18498000 11338000 11242000 5328700 5913700 4407 900 4525 11585;11586;11587;11588 18086;18087;18088;18089;18090;18091 18087 6 FQSIVIGCALEDQKK SACSSEVPHGPVDQKFQSIVIGCALEDQKK FQSIVIGCALEDQKKIKRRLETLLRNIENS K F Q K K I 1 0 0 1 1 2 1 1 0 2 1 2 0 1 0 1 0 0 0 1 0 0 15 1 1734.8975 B3KN59;B3KM36;O95816 B3KN59 155 169 BAG2 BAG family molecular chaperone regulator 2 yes no 3 0.056537 12.492 1 1.3286 1.162 NaN 1 Median NaN NaN NaN 0 0 Median 1.3286 1.162 NaN 1 0 Median 1512200 575580 936570 0 0 0 1512200 575580 936570 4408 900 4526 11589 18092 18092 1 FQSLGVAFYR RLVTMQIWDTAGQERFQSLGVAFYRGADCC AGQERFQSLGVAFYRGADCCVLVFDVTAPN R F Q Y R G 1 1 0 0 0 1 0 1 0 0 1 0 0 2 0 1 0 0 1 1 0 0 10 0 1186.6135 A0A158RFU6;P51149;C9J592;C9J8S3;B4DPH9;C9IZZ0 A0A158RFU6 70 79 RAB7A Ras-related protein Rab-7a yes no 2 0.011972 60.59 1 1 1.0498 0.98203 42.897 2 Median 1.3062 1.33 NaN 1 0 Median 0.84371 0.72509 NaN 1 0 Median 32851000 16075000 16776000 30055000 14705000 15350000 2796300 1370800 1425600 4409 628 4527 11590;11591 18093;18094 18093 2 FQSSAVMALQEACEAYLVGLFEDTNLCAIHAK RLVREIAQDFKTDLRFQSSAVMALQEACEA VGLFEDTNLCAIHAKRVTIMPKDIQLARRI R F Q A K R 6 0 1 1 2 2 3 1 1 1 4 1 1 2 0 2 1 0 1 2 0 0 32 0 3585.6942 P68431 P68431 85 116 HIST1H3A Histone H3.1 yes yes 3 0.025478 13.202 1 0.99364 0.83397 NaN 1 Median NaN NaN NaN 0 0 Median 0.99364 0.83397 NaN 1 0 Median 48600000 24439000 24160000 0 0 0 48600000 24439000 24160000 4410 1661 4528 11592 18095 18095 1 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAK RLVREIAQDFKTDLRFQSSAVMALQEASEA VGLFEDTNLCAIHAKRVTIMPKDIQLARRI R F Q A K R 6 0 1 1 1 2 3 1 1 1 4 1 1 2 0 3 1 0 1 2 0 0 32 0 3512.6956 Q71DI3 Q71DI3 85 116 HIST2H3A Histone H3.2 yes yes 3 3.6633E-31 95.302 1 1 1.2629 1.2457 25.339 2 Median 1.3065 1.4902 NaN 1 0 Median 1.2208 1.0414 NaN 1 0 Median 176920000 75995000 100930000 175780000 75528000 100250000 1147300 466760 680550 4411 1865 4529;4530 11593;11594 18096;18097 18096 1720 2 FQSVIITSGTLSPLDIYPK SCMDASLAIKPVFERFQSVIITSGTLSPLD IITSGTLSPLDIYPKILDFHPVTMATFTMT R F Q P K I 0 0 0 1 0 1 0 1 0 3 2 1 0 1 2 3 2 0 1 1 0 0 19 0 2078.13 A8MX75;P18074;E7EVE9;K7EKF3;Q2TB79;Q6ZNQ5 A8MX75 427 445 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 2 2.7866E-05 57.434 3 0.74377 0.75213 1.9949 2 Median 0.74377 0.75213 1.9949 2 0 Median NaN NaN NaN 0 0 Median 14124000 7988400 6135600 14124000 7988400 6135600 0 0 0 4412 799 4531 11595;11596;11597 18098;18099;18100;18101 18098 4 FQTEIQTVNK IADTMVQIFKGLQERFQTEIQTVNKQFPCE GLQERFQTEIQTVNKQFPCEPFKFLEPTLR R F Q N K Q 0 0 1 0 0 2 1 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 10 0 1206.6245 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 288 297 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 8.0351E-07 107.15 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4413 610 4532 11598 18102 18102 1 FQTIPLYYIEDHNGR LKSRDPIIFSVGWRRFQTIPLYYIEDHNGR FQTIPLYYIEDHNGRQRLLKYTPQHMHCGA R F Q G R Q 0 1 1 1 0 1 1 1 1 2 1 0 0 1 1 0 1 0 2 0 0 0 15 0 1864.9108 Q14692 Q14692 951 965 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 6.9554E-05 73.022 2 0.88833 0.96462 7.0061 2 Median 0.88833 0.96462 7.0061 2 0 Median NaN NaN NaN 0 0 Median 86599000 48726000 37873000 86599000 48726000 37873000 0 0 0 4414 1742 4533 11599;11600 18103;18104 18104 2 FQTLQTSK PLAASKECLSVWNIKFQTLQTSKELPQGTS LSVWNIKFQTLQTSKELPQGTSGQLWYYGE K F Q S K E 0 0 0 0 0 2 0 0 0 0 1 1 0 1 0 1 2 0 0 0 0 0 8 0 951.50255 Q9H8H0 Q9H8H0 294 301 NOL11 Nucleolar protein 11 yes yes 2 4.1402E-09 159.04 2 2 1.0318 0.99133 15.742 2 Median 0.79285 0.8869 NaN 1 0 Median 1.3428 1.1081 NaN 1 0 Median 102580000 49784000 52797000 85353000 44905000 40448000 17228000 4878900 12349000 4415 2042 4534 11601;11602;11603;11604 18105;18106;18107;18108;18109 18106 5 FQTMEEK DLKFIDTTSKFGHGRFQTMEEKKAFMGPLK TSKFGHGRFQTMEEKKAFMGPLKKDRIAKE R F Q E K K 0 0 0 0 0 1 2 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 7 0 911.40587 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;B3KS36 P39023 379 385 RPL3;rpl3 60S ribosomal protein L3 no no 2 0.055806 52.403 1 1.3164 1.0398 NaN 1 Median NaN NaN NaN 0 0 Median 1.3164 1.0398 NaN 1 0 Median 4113900 1857400 2256500 0 0 0 4113900 1857400 2256500 4416 1554;936 4535 11605 18110 18110 1 FQVATDALK AQVAHADQQLRDLGKFQVATDALKSREPQA LRDLGKFQVATDALKSREPQAKPQLDLSID K F Q L K S 2 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 0 991.53385 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1686 1694 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0042207 69.812 2 3 0.96934 1.0031 3.5477 2 Median 0.96934 1.0031 3.5477 2 0 Median NaN NaN NaN 0 0 Median 69888000 33757000 36132000 63475000 33757000 29718000 6413300 0 6413300 4417 186;1747 4536 11606;11607;11608;11609;11610 18111;18112;18113;18114;18115;18116 18111 6 FQWDLNAWTK LKMIVDPVEPHGEMKFQWDLNAWTKSAEAF HGEMKFQWDLNAWTKSAEAFGKIVAERPGT K F Q T K S 1 0 1 1 0 1 0 0 0 0 1 1 0 1 0 0 1 2 0 0 0 0 10 0 1307.6299 B2R8R5;Q13263;M0R0K9 B2R8R5 391 400 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.010146 53.751 2 1.2458 1.2672 15.333 2 Median 1.2458 1.2672 15.333 2 0 Median NaN NaN NaN 0 0 Median 26010000 10175000 15835000 26010000 10175000 15835000 0 0 0 4418 862 4537 11611;11612 18117;18118;18119 18119 3 FQYCVAVGAQTFPSVSAPSK EFRLLSKEGPAHEPKFQYCVAVGAQTFPSV AVGAQTFPSVSAPSKKVAKQMAAEEAMKAL K F Q S K K 3 0 0 0 1 2 0 1 0 0 0 1 0 2 2 3 1 0 1 3 0 0 20 0 2143.0408 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 646 665 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 5.3206E-06 56.482 2 2 1.2635 1.141 27.368 4 Median 1.3947 1.4201 3.2736 2 0 Median 1.1232 0.89021 7.426 2 0 Median 25328000 11017000 14310000 18755000 7883300 10872000 6572200 3134100 3438100 4419 5 4538 11613;11614;11615;11616 18120;18121;18122;18123;18124;18125;18126 18122 7 FRCEDGETFSK GRCCTPQLTRTVKMRFRCEDGETFSKNVMM VKMRFRCEDGETFSKNVMMIQSCKCNYNCP R F R S K N 0 1 0 1 1 0 2 1 0 0 0 1 0 2 0 1 1 0 0 0 0 0 11 1 1374.5874 B4DI61;Q6FI18;O00622;Q53FA4 B4DI61 311 321 CYR61 Protein CYR61 yes no 2 0.02457 67.726 1 3.5149 3.8975 NaN 1 Median 3.5149 3.8975 NaN 1 0 Median NaN NaN NaN 0 0 Median 9553000 2053800 7499200 9553000 2053800 7499200 0 0 0 4420 979 4539 11617 18127 18127 1 FREDHPDLIQNAK DFQREKQEFERNLARFREDHPDLIQNAKKS ARFREDHPDLIQNAKKSDIPEKPKTPQQLW R F R A K K 1 1 1 2 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 13 1 1581.79 E9PKP7;P17480;A8K962;B4DNQ1;O00164;Q05BZ1 E9PKP7 179 191 UBTF Nucleolar transcription factor 1 yes no 3 0.0011149 52.5 2 0.60224 0.69922 6.1553 2 Median 0.60224 0.69922 6.1553 2 0 Median NaN NaN NaN 0 0 Median 61765000 39332000 22433000 61765000 39332000 22433000 0 0 0 4421 1244 4540 11618;11619 18128;18129;18130 18128 2 FRENLIYTYIGPVLVSVNPYR NFTSEAAFIENLRRRFRENLIYTYIGPVLV YTYIGPVLVSVNPYRDLQIYSRQHMERYRG R F R Y R D 0 2 2 0 0 0 1 1 0 2 2 0 0 1 2 1 1 0 3 3 0 0 21 1 2512.3478 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6;I3L168;I3L3F5 F5H6E2 47 67 MYO1C Unconventional myosin-Ic yes no 3 4.1564E-07 54.834 2 1.1465 1.2208 9.0419 2 Median 1.1465 1.2208 9.0419 2 0 Median NaN NaN NaN 0 0 Median 15915000 6915900 8999400 15915000 6915900 8999400 0 0 0 4422 1088 4541 11620;11621 18131;18132;18133 18133 2 FRPAGAAPR NRSREARKDRTPPPRFRPAGAAPRPPPKPM RTPPPRFRPAGAAPRPPPKPM_________ R F R P R P 3 2 0 0 0 0 0 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 9 1 941.51953 A0A024RB14;P62854;Q5JNZ5 A0A024RB14 101 109 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 3 0.021621 39.305 1 0.92454 0.9037 NaN 1 Median 0.92454 0.9037 NaN 1 0 Median NaN NaN NaN 0 0 Median 2239700 1237100 1002600 2239700 1237100 1002600 0 0 0 4423 319 4542 11622 18134 18134 1 FRPAGAAPRPPPK NRSREARKDRTPPPRFRPAGAAPRPPPKPM PRFRPAGAAPRPPPKPM_____________ R F R P K P 3 2 0 0 0 0 0 1 0 0 0 1 0 1 5 0 0 0 0 0 0 0 13 2 1360.7728 A0A024RB14;P62854;Q5JNZ5 A0A024RB14 101 113 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 3 8.5487E-06 101.56 2 1 0.47168 0.53793 55.799 3 Median 0.46968 0.53662 0.34656 2 0 Median 1.522 1.4106 NaN 1 0 Median 434280000 285010000 149270000 393680000 269400000 124280000 40600000 15609000 24991000 4424 319 4543 11623;11624;11625 18135;18136;18137;18138;18139;18140 18135 6 FRPAGAAPRPPPKPM NRSREARKDRTPPPRFRPAGAAPRPPPKPM FRPAGAAPRPPPKPM_______________ R F R P M - 3 2 0 0 0 0 0 1 0 0 0 1 1 1 6 0 0 0 0 0 0 0 15 3 1588.866 A0A024RB14;P62854;Q5JNZ5 A0A024RB14 101 115 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 3 4.1368E-10 115.37 2 1 0.77342 0.89563 33.315 3 Median 0.76655 0.88819 1.1801 2 0 Median 1.5911 1.5813 NaN 1 0 Median 1407600000 804820000 602780000 1396900000 800760000 596100000 10732000 4060200 6672100 4425 319 4544;4545 11626;11627;11628 18141;18142;18143;18144;18145 18144 243 5 FRPLQLETINVTMAGK GKVKDILQNVFKLEKFRPLQLETINVTMAG RPLQLETINVTMAGKEVFLVMPTGGGKSLC K F R G K E 1 1 1 0 0 1 1 1 0 1 2 1 1 1 1 0 2 0 0 1 0 0 16 1 1816.9869 A0A024RAV2;P46063;F5H2L2;F8WA66;F8WD97 A0A024RAV2 92 107 RECQL ATP-dependent DNA helicase Q1 yes no 3 0.00038719 45.438 2 1.854 2.086 NaN 1 Median 1.854 2.086 NaN 1 0 Median NaN NaN NaN 0 0 Median 13457000 4735700 8720800 13457000 4735700 8720800 0 0 0 4426 314 4546 11629;11630 18146;18147 18147 232 2 FRPMDNLSGGEK YLDGINYNCVAPGKRFRPMDNLSGGEKTVA GKRFRPMDNLSGGEKTVAALALLFAIHSYK R F R E K T 0 1 1 1 0 0 1 2 0 0 1 1 1 1 1 1 0 0 0 0 0 0 12 1 1349.6398 Q14683;G8JLG1;V9GY57 Q14683 1122 1133 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0004 70.488 2 1.1983 1.3216 23.385 2 Median 1.1983 1.3216 23.385 2 0 Median NaN NaN NaN 0 0 Median 23610000 10144000 13466000 23610000 10144000 13466000 0 0 0 4427 1739 4547 11631;11632 18148;18149 18148 1570 2 FRQDWGPITSISFR QVIIHNIKFNETLMKFRQDWGPITSISFRT KFRQDWGPITSISFRTDGHPVMAAGSPCGH K F R F R T 0 2 0 1 0 1 0 1 0 2 0 0 0 2 1 2 1 1 0 0 0 0 14 1 1708.8685 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 229 242 WDR36 WD repeat-containing protein 36 yes no 3 0.00027721 59.673 1 2 1.2026 1.0583 13.712 2 Median NaN NaN NaN 0 0 Median 1.2026 1.0583 13.712 2 0 Median 25395000 16404000 8991100 8109500 8109500 0 17286000 8294600 8991100 4428 486 4548 11633;11634;11635 18150;18151;18152;18153;18154 18153 5 FSAFLDK DLSTLKCYPPGQPEKFSAFLDKVVGLQK__ YPPGQPEKFSAFLDKVVGLQK_________ K F S D K V 1 0 0 1 0 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 0 0 7 0 826.4225 A0A096LP10;A0A087WT15 A0A096LP10 150 156 ALG13 yes no 2 0.02687 81.297 1 0.67319 0.79244 NaN 1 Median 0.67319 0.79244 NaN 1 0 Median NaN NaN NaN 0 0 Median 428530000 255890000 172640000 428530000 255890000 172640000 0 0 0 4429 460 4549 11636 18155 18155 1 FSAIASQLVHAPPMQLGFPSLHSFIK NPCASTYDETLHVAKFSAIASQLVHAPPMQ PPMQLGFPSLHSFIKEHSLQVSPSLEKGAK K F S I K E 3 0 0 0 0 2 0 1 2 2 3 1 1 3 3 4 0 0 0 1 0 0 26 0 2822.4942 O95235 O95235 500 525 KIF20A Kinesin-like protein KIF20A yes yes 4 8.0866E-12 64.256 2 1.5124 1.2089 1.3248 2 Median NaN NaN NaN 0 0 Median 1.5124 1.2089 1.3248 2 0 Median 38842000 14522000 24320000 0 0 0 38842000 14522000 24320000 4430 1421 4550 11637;11638 18156;18157 18156 2 FSALQQAVPTESTDNRR AASEAARPATSTLNRFSALQQAVPTESTDN ALQQAVPTESTDNRRVVQRSSLSRERGEKA R F S R R V 2 2 1 1 0 2 1 0 0 0 1 0 0 1 1 2 2 0 0 1 0 0 17 1 1918.9497 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;Q96I65;H7C044 E7EX73 960 976 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 3 1.1764E-05 78.326 1 1 1.7442 1.7509 1.7483 2 Median 1.5556 1.7294 NaN 1 0 Median 1.9556 1.7727 NaN 1 0 Median 27300000 10719000 16581000 24308000 9607300 14701000 2991500 1112100 1879400 4431 896 4551 11639;11640 18158;18159 18158 1 FSASGELGNGNIK IGDAVVISCAKDGVKFSASGELGNGNIKLS VKFSASGELGNGNIKLSQTSNVDKEEEAVT K F S I K L 1 0 2 0 0 0 1 3 0 1 1 1 0 1 0 2 0 0 0 0 0 0 13 0 1292.6361 Q6FI35;Q6FHF5;P12004 Q6FI35 169 181 PCNA Proliferating cell nuclear antigen yes no 2 1.7638E-13 130.41 2 0.74187 0.8189 7.862 2 Median 0.74187 0.8189 7.862 2 0 Median NaN NaN NaN 0 0 Median 161080000 96370000 64713000 161080000 96370000 64713000 0 0 0 4432 1473 4552 11641;11642 18160;18161;18162;18163 18163 4 FSCIIGPNGSGK KSYAGEKILGPFHKRFSCIIGPNGSGKSNV HKRFSCIIGPNGSGKSNVIDSMLFVFGYRA R F S G K S 0 0 1 0 1 0 0 3 0 2 0 1 0 1 1 2 0 0 0 0 0 0 12 0 1235.5969 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 108 119 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein no no 2 0.00075751 76.302 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4433 2070;1136 4553 11643 18164 18164 1 FSCNQPQCPAVFYTFNK IEEPKVLSEAGSAARFSCNQPQCPAVFYTF CNQPQCPAVFYTFNKLKHHLMEQHNIEGEI R F S N K L 1 0 2 0 2 2 0 0 0 0 0 1 0 3 2 1 1 0 1 1 0 0 17 0 2106.9292 Q13129;Q59GL0 Q13129 1407 1423 RLF Zinc finger protein Rlf yes no 2 0.05353 30.905 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1453300 0 1453300 0 0 0 1453300 0 1453300 4434 1705 4554 11644 18165 18165 1 FSDFLLDPYK VVEDELVKKYSLPSKFSDFLLDPYKYMTLN SLPSKFSDFLLDPYKYMTLNPSTKRKNTGS K F S Y K Y 0 0 0 2 0 0 0 0 0 0 2 1 0 2 1 1 0 0 1 0 0 0 10 0 1243.6125 Q9UIG0 Q9UIG0 288 297 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 5.0594E-08 115.71 1 2 40.535 32.814 22.274 2 Median NaN NaN NaN 0 0 Median 40.535 32.814 22.274 2 0 Median 101220000 2148200 99070000 49911000 0 49911000 51307000 2148200 49159000 4435 2103 4555 11645;11646;11647 18166;18167;18168;18169;18170 18169 5 FSDFPLSK LMQNYEKINVNEITRFSDFPLSKKTLKGLQ NVNEITRFSDFPLSKKTLKGLQEAQYRLVT R F S S K K 0 0 0 1 0 0 0 0 0 0 1 1 0 2 1 2 0 0 0 0 0 0 8 0 939.47018 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 71 78 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.0078194 81.296 2 0.89917 0.9206 4.6451 2 Median 0.89917 0.9206 4.6451 2 0 Median NaN NaN NaN 0 0 Median 44996000 23408000 21588000 44996000 23408000 21588000 0 0 0 4436 1708 4556 11648;11649 18171;18172 18172 2 FSDLFSLAEEYEDSSTKPPK LQHVQASCDEAHKMKFSDLFSLAEEYEDSS SLAEEYEDSSTKPPKSRRKAALSSPRSRKN K F S P K S 1 0 0 2 0 0 3 0 0 0 2 2 0 2 2 4 1 0 1 0 0 0 20 1 2289.0689 Q68E01 Q68E01 967 986 INTS3 Integrator complex subunit 3 yes yes 3 0.0020956 29.603 1 1.4331 1.6323 NaN 1 Median 1.4331 1.6323 NaN 1 0 Median NaN NaN NaN 0 0 Median 9541300 3724700 5816600 9541300 3724700 5816600 0 0 0 4437 1840 4557 11650 18173 18173 1 FSDQFPLPLK LHGFKNQVGDENWRRFSDQFPLPLKERLAA ENWRRFSDQFPLPLKERLAAFYGV______ R F S L K E 0 0 0 1 0 1 0 0 0 0 2 1 0 2 2 1 0 0 0 0 0 0 10 0 1190.6336 A0A024RAM0;Q92973;S4R398 A0A024RAM0 880 889 TNPO1 Transportin-1 yes no 2 0.011602 61.679 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9303500 0 9303500 9303500 0 9303500 0 0 0 4438 309 4558 11651 18174 18174 1 FSDSHNALR LVFEWTIVKDSEADRFSDSHNALRILTFLE DSEADRFSDSHNALRILTFLESTYIPPSYI R F S L R I 1 1 1 1 0 0 0 0 1 0 1 0 0 1 0 2 0 0 0 0 0 0 9 0 1045.4941 Q8TEM1 Q8TEM1 170 178 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.026221 32.999 1 0.33986 0.34637 NaN 1 Median 0.33986 0.34637 NaN 1 0 Median NaN NaN NaN 0 0 Median 6912600 5559000 1353500 6912600 5559000 1353500 0 0 0 4439 1937 4559 11652 18175 18175 1 FSEAEHWLDYFPPLAIQDLK GIMKSLGLSDEEIVKFSEAEHWLDYFPPLA HWLDYFPPLAIQDLKRMGLKVDWRRSFITT K F S L K R 2 0 0 2 0 1 2 0 1 1 3 1 0 2 2 1 0 1 1 0 0 0 20 0 2418.1896 B4E266;B4DER1;B2RCM2;Q9P2J5;Q6NVI4 B4E266 128 147 LARS Leucine--tRNA ligase, cytoplasmic yes no 3 2.0776E-06 52.814 2 1.342 1.3777 15.994 2 Median 1.342 1.3777 15.994 2 0 Median NaN NaN NaN 0 0 Median 56826000 22884000 33941000 56826000 22884000 33941000 0 0 0 4440 883 4560 11653;11654 18176;18177;18178 18176 3 FSEGNILELLHR VKQAMQKHLLQGWLRFSEGNILELLHRLDV WLRFSEGNILELLHRLDVENSSEVAVSVLN R F S H R L 0 1 1 0 0 0 2 1 1 1 3 0 0 1 0 1 0 0 0 0 0 0 12 0 1426.7569 Q9BPX3;Q6NUR1 Q9BPX3 276 287 NCAPG Condensin complex subunit 3 yes no 2;3 1.568E-08 97.463 4 3 0.82679 0.95068 30.701 6 Median 0.83308 0.96831 10.137 3 0 Plateau 1.6143 1.4084 45.27 3 0 Plateau 449290000 223790000 225500000 329490000 177920000 151570000 119800000 45867000 73932000 4441 1995 4561 11655;11656;11657;11658;11659;11660;11661 18179;18180;18181;18182;18183;18184;18185;18186;18187;18188;18189;18190;18191;18192 18180 14 FSEIPQR CDKYLQQIFESQRMKFSEIPQRLHALLMPP IFESQRMKFSEIPQRLHALLMPPEPIIINH K F S Q R L 0 1 0 0 0 1 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 7 0 875.45012 A0A024R137;A0A024R102;Q96GM5;F8VUB0;A8K9I5;F8VRQ4 A0A024R137 478 484 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 no no 2 0.014567 99.919 1 0.80657 0.81229 NaN 1 Median 0.80657 0.81229 NaN 1 0 Median NaN NaN NaN 0 0 Median 10737000 6019300 4717500 10737000 6019300 4717500 0 0 0 4442 65 4562 11662 18193 18193 1 FSFSFSNK QKLEKSPLAGNKDNKFSFSFSNKKLLGSKA AGNKDNKFSFSFSNKKLLGSKALRPPTSPG K F S N K K 0 0 1 0 0 0 0 0 0 0 0 1 0 3 0 3 0 0 0 0 0 0 8 0 962.44978 O75151;Q8N359;B4DH04 O75151 635 642 PHF2 Lysine-specific demethylase PHF2 yes no 2 0.017218 60.59 2 1.1741 1.1878 6.6567 2 Median 1.1741 1.1878 6.6567 2 0 Median NaN NaN NaN 0 0 Median 18292000 8379900 9912500 18292000 8379900 9912500 0 0 0 4443 1400 4563 11663;11664 18194;18195 18194 2 FSFTLPYPVK VSVIQSIPIFNETGRFSFTLPYPVKIKVRF NETGRFSFTLPYPVKIKVRFSFFLQIYLIM R F S V K I 0 0 0 0 0 0 0 0 0 0 1 1 0 2 2 1 1 0 1 1 0 0 10 0 1197.6434 Q9P035;H3BRL8;H3BPZ1;H3BS72 Q9P035 310 319 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 2.0888E-06 111.17 2 2 1.0191 1.0403 19.62 4 Linear 0.98871 0.99578 0.89915 2 0 Median 0.90639 0.72366 11.625 2 0 Median 29563000 16069000 13494000 24945000 13530000 11415000 4617500 2538600 2078900 4444 2091 4564 11665;11666;11667;11668 18196;18197;18198;18199;18200;18201;18202;18203 18199 8 FSGDLDDQTCR AEMKSLEEKIGCLLKFSGDLDDQTCREDLH CLLKFSGDLDDQTCREDLHILFSNHGEIKW K F S C R E 0 1 0 3 1 1 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1312.5354 B5BUB5;P05455;Q14730 B5BUB5 236 246 SSB Lupus La protein yes no 2 0.00045221 77.379 1 1.3395 1.3319 NaN 1 Median 1.3395 1.3319 NaN 1 0 Median NaN NaN NaN 0 0 Median 8384900 3437800 4947100 8384900 3437800 4947100 0 0 0 4445 1077 4565 11669 18204 18204 1 FSGEEGEIEDDESGTENR MFRKSSTSPKWAHDKFSGEEGEIEDDESGT EEGEIEDDESGTENREEKDNIQPTTE____ K F S N R E 0 1 1 2 0 0 6 3 0 1 0 0 0 1 0 2 1 0 0 0 0 0 18 0 1998.7927 Q9Y2W1 Q9Y2W1 927 944 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 4.8028E-09 81.494 3 1.3129 1.3042 NaN 1 Median 1.3129 1.3042 NaN 1 0 Median NaN NaN NaN 0 0 Median 9673900 2664200 7009800 9673900 2664200 7009800 0 0 0 4446 2128 4566 11670;11671;11672 18205;18206;18207 18205 3 FSGEEGEIEDDESGTENREEK MFRKSSTSPKWAHDKFSGEEGEIEDDESGT EIEDDESGTENREEKDNIQPTTE_______ K F S E K D 0 1 1 2 0 0 8 3 0 1 0 1 0 1 0 2 1 0 0 0 0 0 21 1 2384.9728 Q9Y2W1 Q9Y2W1 927 947 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 3.8852E-16 109.37 2 2 1.6062 1.5432 14.006 4 Median 1.5459 1.7539 4.9357 2 0 Median 1.6583 1.3845 2.1797 2 0 Median 64124000 23321000 40803000 54077000 19634000 34443000 10047000 3687900 6359500 4447 2128 4567 11673;11674;11675;11676 18208;18209;18210;18211;18212;18213;18214;18215;18216 18208 9 FSGGFGAR HHYKGSSRGRSKSSRFSGGFGARDYRQSSG GRSKSSRFSGGFGARDYRQSSGASSSSFSS R F S A R D 1 1 0 0 0 0 0 3 0 0 0 0 0 2 0 1 0 0 0 0 0 0 8 0 797.38204 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E132;A0A0J9YVQ7;A0A087WVZ1 A0A0D9SFB3 593 600 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.0012944 110.34 2 1.8027 1.9712 NaN 1 Median 1.8027 1.9712 NaN 1 0 Median NaN NaN NaN 0 0 Median 35237000 11803000 23434000 35237000 11803000 23434000 0 0 0 4448 522 4568 11677;11678 18217;18218;18219 18218 3 FSGGWR GLGFDPEMQNRPTQKFSGGWRMRVSLARAL EMQNRPTQKFSGGWRMRVSLARALFMEPTL K F S W R M 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 1 0 1 0 0 0 0 6 0 708.33436 Q8NE71;Q2L6I2;B4DNU2;Q59F96;H0YGW7 Q8NE71 452 457 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.040624 107.29 1 0.66955 0.72733 NaN 1 Median 0.66955 0.72733 NaN 1 0 Median NaN NaN NaN 0 0 Median 28329000 16170000 12159000 28329000 16170000 12159000 0 0 0 4449 1926 4569 11679 18220 18220 1 FSGQIER LYDCRSPDESHRMWRFSGQIERVTWNHFSP DESHRMWRFSGQIERVTWNHFSPCHFLAST R F S E R V 0 1 0 0 0 1 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 7 0 835.41882 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 341 347 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.0099511 114.72 2 1 0.97374 1.084 3.9418 3 Plateau 0.95012 1.0817 0.29863 2 0 Median 1.1777 1.0104 NaN 1 0 Median 148820000 74151000 74672000 140450000 70577000 69876000 8369000 3573100 4795900 4450 339 4570 11680;11681;11682 18221;18222;18223;18224;18225;18226 18222 6 FSGVNEQPPVVLAVK EVVNSITGERLSAYRFSGVNEQPPVVLAVK FSGVNEQPPVVLAVKEFSWQKRTGLLIGLE R F S V K E 1 0 1 0 0 1 1 1 0 0 1 1 0 1 2 1 0 0 0 4 0 0 15 0 1582.8719 Q8WYP5;Q96M44 Q8WYP5 70 84 AHCTF1 Protein ELYS yes no 2 2.3633E-30 152.64 2 2 1.985 1.8721 19.5 4 Median 1.4365 1.582 2.7123 2 0 Median 2.6961 2.2131 2.5706 2 0 Median 164450000 53123000 111330000 100640000 35485000 65153000 63813000 17638000 46175000 4451 1945 4571 11683;11684;11685;11686 18227;18228;18229;18230;18231;18232;18233;18234 18230 8 FSHDAPPPGTK ESPRRHHHQTKVFAKFSHDAPPPGTKKKHL VFAKFSHDAPPPGTKKKHLSIEQLNARRRK K F S T K K 1 0 0 1 0 0 0 1 1 0 0 1 0 1 3 1 1 0 0 0 0 0 11 0 1152.5564 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 254 264 INOC1;INO80 DNA helicase INO80 yes no 2 0.00044256 78.136 1 0.56514 0.57138 NaN 1 Median 0.56514 0.57138 NaN 1 0 Median NaN NaN NaN 0 0 Median 8769300 5718800 3050500 8769300 5718800 3050500 0 0 0 4452 288 4572 11687 18235;18236 18236 2 FSIAPSSLDPSNR IPARLPITCLTIPPRFSIAPSSLDPSNRKP PRFSIAPSSLDPSNRKPLTVLNKGLENPLP R F S N R K 1 1 1 1 0 0 0 0 0 1 1 0 0 1 2 4 0 0 0 0 0 0 13 0 1389.6888 P53350;B2R841;B4E083;Q59GD0;D3DWF3;I3L2H5 P53350 325 337 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 9.3579E-06 100.88 2 2 1.2273 1.2265 9.6229 4 Median 1.0271 1.12 13.412 2 0 Median 1.4603 1.235 1.5248 2 0 Median 107760000 50917000 56840000 95071000 45814000 49256000 12685000 5102200 7583200 4453 1604 4573 11688;11689;11690;11691 18237;18238;18239;18240;18241;18242 18238 5 FSIQTMCPIEGEGNIAR GFTLIWKNVPKTQMKFSIQTMCPIEGEGNI IQTMCPIEGEGNIARFLFSLFGQKHNAVNA K F S A R F 1 1 1 0 1 1 2 2 0 3 0 0 1 1 1 1 1 0 0 0 0 0 17 0 1921.9026 B2R7M3;A0A024QZY1;Q13155;A8MU58;F8W950 B2R7M3 199 215 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 2 0.0002266 62.89 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5958500 0 5958500 5958500 0 5958500 0 0 0 4454 32 4574 11692;11693 18243;18244;18245 18245 17 3 FSISAHGK RQAMLENASDIKLEKFSISAHGKELFVNAD SDIKLEKFSISAHGKELFVNADLYIVAGRR K F S G K E 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 2 0 0 0 0 0 0 8 0 845.43955 Q8NE71;Q2L6I2;B4DNU2;Q59F96;H0YGW7;Q5STZ8 Q8NE71 309 316 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.012282 67.981 2 0.69257 0.7522 NaN 1 Median 0.69257 0.7522 NaN 1 0 Median NaN NaN NaN 0 0 Median 69896000 24469000 45428000 69896000 24469000 45428000 0 0 0 4455 1926 4575 11694;11695 18246;18247;18248 18246 3 FSLDFNLR GEKPFQCTFEGCGKRFSLDFNLRTHVRIHT FEGCGKRFSLDFNLRTHVRIHTGDRPYVCP R F S L R T 0 1 1 1 0 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1010.5185 P25490;H0YJV7;O15391;Q96MM3 P25490 364 371 YY1;YY2;ZFP42 Transcriptional repressor protein YY1;Transcription factor YY2;Zinc finger protein 42 homolog yes no 2 0.023118 63.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2991100 2991100 0 2991100 2991100 0 0 0 0 4456 1516 4576 11696 18249 18249 1 FSLENNFLLQHNIR RFHDLLSQLDDQYSRFSLENNFLLQHNIRK RFSLENNFLLQHNIRKSKRNLQDNFQEDPI R F S I R K 0 1 3 0 0 1 1 0 1 1 3 0 0 2 0 1 0 0 0 0 0 0 14 0 1743.9057 J3KPM9;P42224;E7EPD2;D2KFR9;E7ENM1 J3KPM9 73 86 STAT1 Signal transducer and activator of transcription;Signal transducer and activator of transcription 1-alpha/beta yes no 3 0.053082 20.236 1 1.5455 1.3673 NaN 1 Median NaN NaN NaN 0 0 Median 1.5455 1.3673 NaN 1 0 Median 1497200 575570 921630 0 0 0 1497200 575570 921630 4457 1326 4577 11697 18250 18250 1 FSLIDLAGNER VFQIILRRKGKLHGKFSLIDLAGNERGADT LHGKFSLIDLAGNERGADTSSADRQTRLEG K F S E R G 1 1 1 1 0 0 1 1 0 1 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1233.6354 B0AZS5;O00139;B4DM85 B0AZS5 407 417 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 0.00010563 96.89 2 4 0.98041 1.0551 9.9346 2 Median 0.98041 1.0551 9.9346 2 0 Median NaN NaN NaN 0 0 Median 86128000 47647000 38481000 79922000 41441000 38481000 6206200 6206200 0 4458 804 4578 11698;11699;11700;11701;11702;11703 18251;18252;18253;18254;18255;18256;18257;18258;18259;18260;18261;18262 18253 12 FSLLPTEQPR AEGGAPAEFYLQVDRFSLLPTEQPRLRVPG LQVDRFSLLPTEQPRLRVPGCNQDLDVQKK R F S P R L 0 1 0 0 0 1 1 0 0 0 2 0 0 1 2 1 1 0 0 0 0 0 10 0 1186.6346 A0A0C4DGT6;Q96AP0;R4GNJ5 A0A0C4DGT6 123 132 ACD Adrenocortical dysplasia protein homolog yes no 2 5.0594E-08 115.71 2 2 1.0185 0.93399 16.382 4 Median 0.78905 0.82739 12.202 2 0 Median 1.2537 1.0438 10.786 2 0 Median 65097000 33815000 31282000 56429000 29847000 26581000 8668400 3968000 4700400 4459 517 4579 11704;11705;11706;11707 18263;18264;18265;18266;18267;18268;18269 18263 7 FSLSQESSYIATQYSLRPR HIERNDAPHKNTQEKFSLSQESSYIATQYS QESSYIATQYSLRPRREEVKLKEIDSKEEK K F S P R R 1 2 0 0 0 2 1 0 0 1 2 0 0 1 1 5 1 0 2 0 0 0 19 1 2232.1175 Q14739;C9JXK0 Q14739 153 171 LBR Lamin-B receptor yes no 3 0.00021226 40.844 2 1.1131 0.97802 6.722 2 Median NaN NaN NaN 0 0 Median 1.1131 0.97802 6.722 2 0 Median 21544000 11095000 10448000 0 0 0 21544000 11095000 10448000 4460 1743 4580 11708;11709 18270;18271;18272 18270 3 FSLVDLAGNER CFQIILRAKGRMHGKFSLVDLAGNERGADT MHGKFSLVDLAGNERGADTSSADRQTRMEG K F S E R G 1 1 1 1 0 0 1 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1219.6197 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1 A8K3S3 488 498 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C no no 2 4.628E-08 118.04 2 2 1.092 1.0625 6.0345 4 Median 0.89762 1.0206 5.6893 2 0 Median 1.3209 1.0987 4.7396 2 0 Median 170500000 85823000 84674000 151880000 77666000 74215000 18617000 8157100 10459000 4461 626 4581 11710;11711;11712;11713 18273;18274;18275;18276;18277;18278 18274 6 FSMGFIDSIIAK FRKLVEHLHNFILFRFSMGFIDSIIAKYLA LFRFSMGFIDSIIAKYLATVVGYLVVSRPF R F S A K Y 1 0 0 1 0 0 0 1 0 3 0 1 1 2 0 2 0 0 0 0 0 0 12 0 1327.6846 B4DL07;P28288;B4DZ22 B4DL07 335 346 ABCD3 ATP-binding cassette sub-family D member 3 yes no 2 0.00043166 78.655 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10767000 0 10767000 10767000 0 10767000 0 0 0 4462 994 4582 11714;11715 18279;18280 18280 785 2 FSNLLGTVYR ______________________________ KFAYRFSNLLGTVYRRGNLNFTCDGNSVIS R F S Y R R 0 1 1 0 0 0 0 1 0 0 2 0 0 1 0 1 1 0 1 1 0 0 10 0 1168.6241 Q15269;A0A0B4J2E5;C9J544 Q15269 7 16 PWP2 Periodic tryptophan protein 2 homolog yes no 2 3E-22 166.07 4 2 1.0096 0.98147 10.866 4 Median 0.78599 0.88567 5.219 2 0 Median 1.2423 1.0604 1.6378 2 0 Median 268570000 138930000 129640000 218450000 117330000 101120000 50121000 21600000 28521000 4463 1756 4583 11716;11717;11718;11719;11720;11721 18281;18282;18283;18284;18285;18286;18287;18288;18289 18282 9 FSNQETCVEIGESVR ADRLGLELGKVVTKKFSNQETCVEIGESVR FSNQETCVEIGESVRGEDVYIVQSGCGEIN K F S V R G 0 1 1 0 1 1 3 1 0 1 0 0 0 1 0 2 1 0 0 2 0 0 15 0 1753.7941 Q53FW2;P60891;B1ALA7 Q53FW2 35 49 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 2 2.3505E-07 102.87 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14979000 0 14979000 14979000 0 14979000 0 0 0 4464 1626 4584 11722;11723 18290;18291 18290 2 FSNQETSVEIGESVR ADRLGLELGKVVTKKFSNQETSVEIGESVR FSNQETSVEIGESVRGEDVYIIQSGCGEIN K F S V R G 0 1 1 0 0 1 3 1 0 1 0 0 0 1 0 3 1 0 0 2 0 0 15 0 1680.7955 A0A140VK41;P11908;B2R860;D3YTJ7;A6NMS2 A0A140VK41 35 49 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 2 0.0020864 45.915 1 3.8201 3.8169 NaN 1 Median 3.8201 3.8169 NaN 1 0 Median NaN NaN NaN 0 0 Median 16862000 4637500 12224000 16862000 4637500 12224000 0 0 0 4465 616 4585 11724 18292;18293 18293 2 FSNSSSSNEFSK QSCSNGQHEYGSCGRFSNSSSSNEFSKCDQ CGRFSNSSSSNEFSKCDQYGSGSSQSTSFE R F S S K C 0 0 2 0 0 0 1 0 0 0 0 1 0 2 0 6 0 0 0 0 0 0 12 0 1319.563 CON__Q5D862;Q5D862 CON__Q5D862 404 415 FLG2 Filaggrin-2 yes no 2 3.7158E-47 170.89 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25411000 25411000 0 20637000 20637000 0 4774200 4774200 0 + 4466 1174 4586 11725;11726;11727;11728 18294;18295;18296;18297 18294 4 FSNTGEDWYVLVGVAK QLEQNEAAFSVAVCRFSNTGEDWYVLVGVA SNTGEDWYVLVGVAKDLILNPRSVAGGFVY R F S A K D 1 0 1 1 0 0 1 2 0 0 1 1 0 1 0 1 1 1 1 3 0 0 16 0 1783.8781 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 896 911 SF3B3 Splicing factor 3B subunit 3 yes no 2 3.1072E-06 83.314 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9727800 0 9727800 9727800 0 9727800 0 0 0 4467 764 4587 11729;11730 18298;18299 18299 2 FSNTLELK AKRYEEKTQKQLPLKFSNTLELKLKKENWG QKQLPLKFSNTLELKLKKENWGPWSAGGSR K F S L K L 0 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 8 0 950.5073 Q4KMR3;Q12965 Q4KMR3 873 880 MYO1E Unconventional myosin-Ie yes no 2 0.017989 74.255 1 1 1.7677 1.4032 NaN 1 Median NaN NaN NaN 0 0 Median 1.7677 1.4032 NaN 1 0 Median 15685000 14301000 1384000 13684000 13684000 0 2000100 616040 1384000 4468 1703 4588 11731;11732 18300;18301 18300 2 FSPAGPILSIR ______________________________ LYEKFSPAGPILSIRVCRDMITRRSLGYAY K F S I R V 1 1 0 0 0 0 0 1 0 2 1 0 0 1 2 2 0 0 0 0 0 0 11 0 1156.6604 A0A087WTT1;A0A024R9C1;P11940;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;Q5VX58;Q3ZCS4;Q9H361;Q2VIP3;H0YBN4;Q4VXU2;E5RJB9;E5RH24;E5RHG7;E5RGC4;E5RFD8 A0A087WTT1 6 16 PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like no no 2 0.00038999 82.261 2 1.7749 1.9282 4.7163 2 Median 1.7749 1.9282 4.7163 2 0 Median NaN NaN NaN 0 0 Median 104840000 38336000 66507000 104840000 38336000 66507000 0 0 0 4469 273 4589 11733;11734 18302;18303;18304;18305 18305 4 FSPAGPVLSIR GDLHSDVTEAMLYEKFSPAGPVLSIRVCRD LYEKFSPAGPVLSIRVCRDMITRRSLGYAY K F S I R V 1 1 0 0 0 0 0 1 0 1 1 0 0 1 2 2 0 0 0 1 0 0 11 0 1142.6448 B1ANR0;Q6IQ30;Q13310;B1ANR1 B1ANR0 31 41 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.0015567 66.595 2 1.9722 2.2124 4.5894 2 Median 1.9722 2.2124 4.5894 2 0 Median NaN NaN NaN 0 0 Median 161840000 56093000 105750000 161840000 56093000 105750000 0 0 0 4470 818 4590 11735;11736 18306;18307 18307 2 FSPDGELYASGSEDGTLR LESYKGHFGPIHCVRFSPDGELYASGSEDG DGELYASGSEDGTLRLWQTVVGKTYGLWKC R F S L R L 1 1 0 2 0 0 2 3 0 0 2 0 0 1 1 3 1 0 1 0 0 0 18 0 1899.8487 Q9Y3F4;B0AZV0;H0YH33 Q9Y3F4 273 290 STRAP Serine-threonine kinase receptor-associated protein yes no 2 1.3259E-05 84.289 3 2 2.7178 2.525 29.863 4 Median 3.1176 3.2981 4.646 2 0 Median 2.3366 1.971 1.8919 2 0 Median 80703000 20717000 59986000 70325000 17970000 52355000 10379000 2746800 7631800 4471 2136 4591 11737;11738;11739;11740;11741 18308;18309;18310;18311;18312;18313;18314;18315;18316 18311 9 FSPEFVDFTAQCLR KQVVEEPSPQLPADRFSPEFVDFTAQCLRK RFSPEFVDFTAQCLRKNPAERMSYLELMEH R F S L R K 1 1 0 1 1 1 1 0 0 0 1 0 0 3 1 1 1 0 0 1 0 0 14 0 1715.7977 C7DUW4;Q6FI23;Q6FHG1;Q53EZ9;P46734;J3KRV4 C7DUW4 294 307 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 2 0.015198 47.302 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4472 1124 4592 11742 18317 18317 1 FSPFPVQDRPESSLVFK PQEDATASPPRQKDKFSPFPVQDRPESSLV PFPVQDRPESSLVFKDTLRTPPRERSGAGS K F S F K D 0 1 0 1 0 1 1 0 0 0 1 1 0 3 3 3 0 0 0 2 0 0 17 1 1979.0153 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1187 1203 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 3 0.0099405 18.163 1 1.5376 1.7033 NaN 1 Median 1.5376 1.7033 NaN 1 0 Median NaN NaN NaN 0 0 Median 19025000 7427600 11598000 19025000 7427600 11598000 0 0 0 4473 619 4593 11743 18318 18318 1 FSPIPFPPLSYK VAVYTTTVHWLESRRFSPIPFPPLSYKHDT SRRFSPIPFPPLSYKHDTKLLILALERLKE R F S Y K H 0 0 0 0 0 0 0 0 0 1 1 1 0 2 4 2 0 0 1 0 0 0 12 0 1391.7489 Q6P2Q9;I3L0J9 Q6P2Q9 822 833 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00021273 81.338 2 0.86808 0.9206 4.7804 2 Median 0.86808 0.9206 4.7804 2 0 Median NaN NaN NaN 0 0 Median 83297000 43057000 40240000 83297000 43057000 40240000 0 0 0 4474 1854 4594 11744;11745 18319;18320;18321;18322 18319 4 FSPNLDSYGWLVSGGQSGLVR LCLDRLQLEAIHKVRFSPNLDSYGWLVSGG SYGWLVSGGQSGLVRIHFVRGLASPLGHRM R F S V R I 0 1 1 1 0 1 0 4 0 0 3 0 0 1 1 4 0 1 1 2 0 0 21 0 2238.1069 Q8WUA4;Q53SY8;H0Y4Q6 Q8WUA4 842 862 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 6.6219E-05 41.967 2 1 0.88127 0.89114 22.763 3 Median 0.78518 0.79306 16.49 2 0 Median 1.307 1.1127 NaN 1 0 Median 24639000 12042000 12597000 19208000 9799700 9408400 5431300 2242400 3188900 4475 1938 4595 11746;11747;11748 18323;18324;18325 18324 2 FSPNSSNPIIVSCGWDK TVQDESHSEWVSCVRFSPNSSNPIIVSCGW PNSSNPIIVSCGWDKLVKVWNLANCKLKTN R F S D K L 0 0 2 1 1 0 0 1 0 2 0 1 0 1 2 4 0 1 0 1 0 0 17 0 1906.8883 E9KL35;P63244;J3KPE3;D6RAC2;H0Y8W2;H0YAF8;D6RHH4;D6R9Z1;H0YAM7;D6R9L0;D6REE5;D6RFX4;B4DVD2;H0Y8R5;D6RBD0 E9KL35 156 172 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.00011163 58.831 1 1.8435 1.4946 NaN 1 Median NaN NaN NaN 0 0 Median 1.8435 1.4946 NaN 1 0 Median 13250000 4991600 8258900 0 0 0 13250000 4991600 8258900 4476 1227 4596 11749 18326;18327 18327 2 FSPNTSQFLLVSSWDTSVR FKLNQPPEDGISSVKFSPNTSQFLLVSSWD TSQFLLVSSWDTSVRLYDVPANSMRLKYQH K F S V R L 0 1 1 1 0 1 0 0 0 0 2 0 0 2 1 5 2 1 0 2 0 0 19 0 2170.0695 J3QT28;A0A140VJF3;O43684;J3QSX4 J3QT28 22 40 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.00011425 65.805 2 0.97862 0.9741 NaN 1 Median 0.97862 0.9741 NaN 1 0 Median NaN NaN NaN 0 0 Median 7180100 4079800 3100300 7180100 4079800 3100300 0 0 0 4477 600 4597 11750;11751 18328;18329 18328 2 FSPTDFLAK HYNALLKVYLQNEYKFSPTDFLAKMEEANI LQNEYKFSPTDFLAKMEEANIQPNRVTYQR K F S A K M 1 0 0 1 0 0 0 0 0 0 1 1 0 2 1 1 1 0 0 0 0 0 9 0 1024.5229 E5KNY5;P42704;B4DSR0;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 179 187 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.017976 52.482 1 2.443 2.655 NaN 1 Median 2.443 2.655 NaN 1 0 Median NaN NaN NaN 0 0 Median 47170000 12680000 34490000 47170000 12680000 34490000 0 0 0 4478 1207 4598 11752 18330 18330 1 FSQELLSNGELNHLPLK FQGEPKKPPMNGYQKFSQELLSNGELNHLP QELLSNGELNHLPLKERMVEIGSRWQRISQ K F S L K E 0 0 2 0 0 1 2 1 1 0 5 1 0 1 1 2 0 0 0 0 0 0 17 0 1938.0211 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0;E9PLT2 E9PKP7 541 557 UBTF Nucleolar transcription factor 1 yes no 2;3 4.4314E-13 116.35 4 3 0.75683 0.77502 24.216 7 Median 0.70661 0.7718 4.6668 4 0 Median 1.4004 1.1935 5.4669 3 0 Median 448580000 240580000 208000000 308020000 181060000 126970000 140550000 59520000 81035000 4479 1244 4599 11753;11754;11755;11756;11757;11758;11759 18331;18332;18333;18334;18335;18336;18337;18338;18339;18340;18341;18342;18343;18344;18345 18341 15 FSQISSQR IGEMVARSSLSVALKFSQISSQRNRGAWSK SLSVALKFSQISSQRNRGAWSKSETRKLIK K F S Q R N 0 1 0 0 0 2 0 0 0 1 0 0 0 1 0 3 0 0 0 0 0 0 8 0 951.47739 B4DZG2;A0A024R8C1;Q15361;A0A087WY09 B4DZG2 657 664 TTF1 Transcription termination factor 1 yes no 2 0.0067727 85.813 1 0.37669 0.37764 NaN 1 Median 0.37669 0.37764 NaN 1 0 Median NaN NaN NaN 0 0 Median 9085000 6067700 3017200 9085000 6067700 3017200 0 0 0 4480 247 4600 11760 18346 18346 1 FSQLAEAYEVLSDEVK YHPDTNKDDPKAKEKFSQLAEAYEVLSDEV SQLAEAYEVLSDEVKRKQYDAYGSAGFDPG K F S V K R 2 0 0 1 0 1 3 0 0 0 2 1 0 1 0 2 0 0 1 2 0 0 16 0 1826.8938 Q59E88;Q53G26;Q96EY1;B3KM81 Q59E88 133 148 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 2.1917E-08 100.22 2 2 1.0698 0.98221 33.534 4 Median 1.3104 1.3274 3.673 2 0 Median 0.9177 0.74347 0.46472 2 0 Median 63622000 29183000 34440000 45642000 19959000 25683000 17981000 9223500 8757100 4481 1786 4601 11761;11762;11763;11764 18347;18348;18349;18350;18351;18352;18353 18347 7 FSQMLQDK KPKSGRVWKDRSKKRFSQMLQDKPLRTSWQ KDRSKKRFSQMLQDKPLRTSWQRKMKERQE R F S D K P 0 0 0 1 0 2 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 8 0 995.47462 Q9H6F5 Q9H6F5 254 261 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.0042153 71.877 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1902200 1902200 0 0 0 0 1902200 1902200 0 4482 2037 4602 11765 18354 18354 1872 1 FSSALR CANEFKEFVEKLKEKFSSALRNSNLEIPDT EFVEKLKEKFSSALRNSNLEIPDTLQELFA K F S L R N 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 6 0 679.36532 Q6AHZ7;Q12789;Q6AWA4;H3BRD0 Q6AHZ7 1378 1383 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.054024 69.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6793800 0 6793800 6793800 0 6793800 0 0 0 4483 1699 4603 11766 18355 18355 1 FSSCGGGGGSFGAGGGFGSR TTSSSTRRSGGGGGRFSSCGGGGGSFGAGG GGGGSFGAGGGFGSRSLVNLGGSKSISISV R F S S R S 1 1 0 0 1 0 0 10 0 0 0 0 0 3 0 4 0 0 0 0 0 0 20 0 1764.7274 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRG2 H6VRG3 46 65 KRT1 Keratin, type II cytoskeletal 1 no no 2 4.4945E-18 111.43 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1000800000 1000800000 0 717860000 717860000 0 282890000 282890000 0 + 4484 1308;1309 4604 11767;11768;11769;11770;11771;11772 18356;18357;18358;18359;18360;18361;18362;18363;18364;18365;18366 18357 11 FSSELEQIELHNSIR SKKDACELIERYLNRFSSELEQIELHNSIR FSSELEQIELHNSIRDRQGRRHCSRETVIK R F S I R D 0 1 1 0 0 1 3 0 1 2 2 0 0 1 0 3 0 0 0 0 0 0 15 0 1800.9006 H0Y9X1;Q96EY4;D6RA57;B7Z504 H0Y9X1 124 138 TMA16 Translation machinery-associated protein 16 yes no 3 0.0054179 47.037 1 1 0.66137 0.61468 39.682 2 Median 0.79322 0.81378 NaN 1 0 Median 0.55143 0.46429 NaN 1 0 Median 25882000 14104000 11778000 21091000 10889000 10202000 4790900 3214500 1576400 4485 1288 4605 11773;11774 18367;18368 18367 1 FSSITAHPER REGLPEDGTLYRINRFSSITAHPERWDVSF YRINRFSSITAHPERWDVSFFTGGPLWALD R F S E R W 1 1 0 0 0 0 1 0 1 1 0 0 0 1 1 2 1 0 0 0 0 0 10 0 1143.5673 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 377 386 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2;3 2.7715E-05 92.051 3 0.78481 0.8103 NaN 1 Median 0.78481 0.8103 NaN 1 0 Median NaN NaN NaN 0 0 Median 23934000 14246000 9687600 23934000 14246000 9687600 0 0 0 4486 1938 4606 11775;11776;11777 18369;18370;18371 18370 3 FSSSGDFLVAGVGQEHR LLCDIPLVGFINSLKFSSSGDFLVAGVGQE SSGDFLVAGVGQEHRLGRWWRIKEARNSVC K F S H R L 1 1 0 1 0 1 1 3 1 0 1 0 0 2 0 3 0 0 0 2 0 0 17 0 1791.854 O43818 O43818 429 445 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2;3 4.5201E-06 86.803 4 0.8589 0.70793 NaN 1 Median NaN NaN NaN 0 0 Median 0.8589 0.70793 NaN 1 0 Median 59360000 10719000 48642000 0 0 0 59360000 10719000 48642000 4487 1389 4607 11778;11779;11780;11781 18372;18373;18374;18375 18372 4 FSSSSGYGGGSSR YSRFSSSGGRGGGGRFSSSSGYGGGSSRVC GRFSSSSGYGGGSSRVCGRGGGGSFGYSYG R F S S R V 0 1 0 0 0 0 0 4 0 0 0 0 0 1 0 6 0 0 1 0 0 0 13 0 1234.5214 CON__P35527;P35527 CON__P35527 47 59 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.2224E-06 104.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19199000 19199000 0 19199000 19199000 0 0 0 0 + 4488 1165 4608 11782 18376 18376 1 FSSYHVK EQLKERFKDKKHLDKFSSYHVKTAFFHVCT KDKKHLDKFSSYHVKTAFFHVCTQNPQDSQ K F S V K T 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 2 0 0 1 1 0 0 7 0 866.42865 Q8N884 Q8N884 433 439 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.026711 76.847 2 1 1.5135 1.6323 16.371 3 Median 1.4599 1.6736 3.5384 2 0 Median 1.5525 1.2646 NaN 1 0 Median 342910000 144460000 198460000 311410000 132000000 179400000 31507000 12451000 19056000 4489 1914 4609 11783;11784;11785 18377;18378;18379;18380;18381 18378 5 FSTPEQAAK GSCSYKDFSESRNNRFSTPEQAAKNRIQHP ESRNNRFSTPEQAAKNRIQHPSNVLHFFNA R F S A K N 2 0 0 0 0 1 1 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 9 0 977.48181 B2R959;Q6NTA2;P14866;M0QXS5;M0QYT0 B2R959 454 462 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 1.8757E-05 119.29 2 2 1.2411 1.191 49.274 4 Median 1.6406 1.8479 6.1069 2 0 Median 0.97377 0.78906 2.2018 2 0 Median 211480000 81838000 129640000 198850000 75457000 123390000 12629000 6380400 6249000 4490 865 4610 11786;11787;11788;11789 18382;18383;18384;18385;18386;18387;18388;18389 18384 8 FSTPILDLFPTK QLHYLRPVVVLERSKFSTPILDLFPTKKTD RSKFSTPILDLFPTKKTDELCVGSS_____ K F S T K K 0 0 0 1 0 0 0 0 0 1 2 1 0 2 2 1 2 0 0 0 0 0 12 0 1377.7544 Q13129;Q59GL0 Q13129 1893 1904 RLF Zinc finger protein Rlf yes no 2 0.0001995 78.653 2 0.78166 0.78636 0.84592 2 Median 0.78166 0.78636 0.84592 2 0 Median NaN NaN NaN 0 0 Median 22033000 12626000 9407200 22033000 12626000 9407200 0 0 0 4491 1705 4611 11790;11791 18390;18391;18392;18393 18393 4 FSTSSLLLR FRPKDPYCHPVCANRFSTSSLLLRIRKRTR PVCANRFSTSSLLLRIRKRTRRQKGVLGTE R F S L R I 0 1 0 0 0 0 0 0 0 0 3 0 0 1 0 3 1 0 0 0 0 0 9 0 1022.576 Q9Y5Q8;Q5T7U1;Q5T7U4 Q9Y5Q8 79 87 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.039901 42.075 1 1.5378 1.3505 NaN 1 Median NaN NaN NaN 0 0 Median 1.5378 1.3505 NaN 1 0 Median 2507300 941620 1565700 0 0 0 2507300 941620 1565700 4492 2149 4612 11792 18394 18394 1 FSVCVLGDQQHCDEAK RFSGTVRLKSTPRPKFSVCVLGDQQHCDEA SVCVLGDQQHCDEAKAVDIPHMDIEALKKL K F S A K A 1 0 0 2 2 2 1 1 1 0 1 1 0 1 0 1 0 0 0 2 0 0 16 0 1891.8193 P62906;Q1JQ76 P62906 63 78 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2;3 1.9117E-18 125.39 4 2 1.0602 0.97579 10.557 5 Median 0.87617 1.0312 9.843 3 0 Median 1.0754 0.91695 1.3801 2 0 Median 857390000 441890000 415500000 712870000 372580000 340290000 144520000 69311000 75208000 4493 1651 4613 11793;11794;11795;11796;11797;11798 18395;18396;18397;18398;18399;18400;18401;18402;18403 18395 9 FSVSPVVR TITTFEHAHNMRVMKFSVSPVVRVAVEAKN HNMRVMKFSVSPVVRVAVEAKNPADLPKLV K F S V R V 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 3 0 0 8 0 889.50215 P13639;Q8TA90;Q6PK56 P13639 499 506 EEF2 Elongation factor 2 yes no 2 0.0062953 87.754 2 1 3.7998 4.3272 40.231 3 Plateau 3.7385 4.2378 2.9516 2 0 Median 2.547 2.1131 NaN 1 0 Median 235820000 56559000 179260000 230690000 54967000 175730000 5125900 1592400 3533500 4494 1478 4614 11799;11800;11801 18404;18405;18406;18407 18406 4 FSWAQGTDTILADEMGLGK GTLHPYQMEGLNWLRFSWAQGTDTILADEM QGTDTILADEMGLGKTVQTAVFLYSLYKEG R F S G K T 2 0 0 2 0 1 1 3 0 1 2 1 1 1 0 1 2 1 0 0 0 0 19 0 2038.967 F5GWX5;A0A0C4DGG9;Q14839;K7EMY3;Q659F1;Q659D0;B3KRD4;Q12873 F5GWX5 732 750 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 2.2302E-06 80.96 2 1 0.85071 0.93122 3.1312 3 Median 0.84463 0.9258 0.82473 2 0 Median 1.2604 0.97647 NaN 1 0 Median 98710000 50610000 48100000 85376000 45054000 40322000 13333000 5556000 7777300 4495 515;1701 4615 11802;11803;11804 18408;18409;18410;18411 18408 373 4 FSWFAGEK ELPGQLKQFSMFLGKFSWFAGEKLTFVDFL FSMFLGKFSWFAGEKLTFVDFLTYDILDQN K F S E K L 1 0 0 0 0 0 1 1 0 0 0 1 0 2 0 1 0 1 0 0 0 0 8 0 970.45487 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3;B4E2J2 Q6FGJ9 149 156 GSTM3 Glutathione S-transferase Mu 3 yes no 2 0.031868 58.119 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22101000 0 22101000 22101000 0 22101000 0 0 0 4496 1503 4616 11805 18412 18412 1 FSYESELFPTFK FDRDVKCIKDFFMKRFSYESELFPTFKDIR MKRFSYESELFPTFKDIRREDTLDVEVSAS R F S F K D 0 0 0 0 0 0 2 0 0 0 1 1 0 3 1 2 1 0 1 0 0 0 12 0 1493.7078 Q9BVS4 Q9BVS4 277 288 RIOK2 Serine/threonine-protein kinase RIO2 yes yes 2 0.0073363 58.699 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4919000 0 4919000 4919000 0 4919000 0 0 0 4497 2010 4617 11806;11807 18413;18414;18415 18415 3 FSYLAVIEGAK RKFRMGLIQTADQLRFSYLAVIEGAKFIMG DQLRFSYLAVIEGAKFIMGDSSVQDQWKEL R F S A K F 2 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 0 0 1 1 0 0 11 0 1196.6441 A8K3M3;P18031;B4DSN5 A8K3M3 269 279 PTPN1 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 1 yes no 2 1.7175E-05 91.584 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6079100 6079100 0 6079100 6079100 0 0 0 0 4498 724 4618 11808;11809 18416;18417 18417 2 FTAQGLPDLNHSQVYAVK HEVEDVIIKCQLPKRFTAQGLPDLNHSQVY QGLPDLNHSQVYAVKTVLQRPLSLIQGPPG R F T V K T 2 0 1 1 0 2 0 1 1 0 2 1 0 1 1 1 1 0 1 2 0 0 18 0 1987.0163 A0A024R7L5;A0A024R7L8;Q92900;A0A059XBJ1;A0A059XAL2;A0A059XAJ5 A0A024R7L5 463 480 UPF1 Regulator of nonsense transcripts 1 yes no 3 0.010237 22.985 1 2.4345 2.4336 NaN 1 Median 2.4345 2.4336 NaN 1 0 Median NaN NaN NaN 0 0 Median 18828000 6520800 12307000 18828000 6520800 12307000 0 0 0 4499 231 4619 11810 18418 18418 1 FTASIQR KLRHSEREMRNTLEKFTASIQRLIEQEEYL EMRNTLEKFTASIQRLIEQEEYLNVQVKEL K F T Q R L 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 7 0 821.43955 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 821 827 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.028486 71.852 2 1 1.2311 1.2182 30.279 2 Median 0.84761 0.98339 NaN 1 0 Median 1.788 1.509 NaN 1 0 Median 418930000 251290000 167650000 389750000 240380000 149370000 29181000 10909000 18272000 4500 2070 4620 11811;11812;11813 18419;18420;18421;18422 18420 4 FTCACPDQFK CQNGATCSRHKRRSKFTCACPDQFKGKFCE KRRSKFTCACPDQFKGKFCEIGSDDCYVGD K F T F K G 1 0 0 1 2 1 0 0 0 0 0 1 0 2 1 0 1 0 0 0 0 0 10 0 1272.5267 Q14520;B7Z8Q5 Q14520 174 183 HABP2 Hyaluronan-binding protein 2;Hyaluronan-binding protein 2 50 kDa heavy chain;Hyaluronan-binding protein 2 50 kDa heavy chain alternate form;Hyaluronan-binding protein 2 27 kDa light chain;Hyaluronan-binding protein 2 27 kDa light chain alternate form yes no 2 4.1955E-05 101.9 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23024000 23024000 0 20559000 20559000 0 2464600 2464600 0 4501 1733 4621 11814;11815 18423;18424;18425 18423 3 FTCSECASGIHSCFVCK FHLACLGLSRRPEGRFTCSECASGIHSCFV CSECASGIHSCFVCKESKTDVKRCVVTQCG R F T C K E 1 0 0 0 4 0 1 1 1 1 0 1 0 2 0 3 1 0 0 1 0 0 17 0 2048.8213 O96028 O96028 705 721 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 3 5.4161E-05 52.172 2 1.3638 1.1013 4.6572 2 Median NaN NaN NaN 0 0 Median 1.3638 1.1013 4.6572 2 0 Median 12916000 5079800 7836400 0 0 0 12916000 5079800 7836400 4502 1435 4622 11816;11817 18426;18427;18428 18427 3 FTDDTFDPELAATIGVDFK IIGESGVGKSSLLLRFTDDTFDPELAATIG TFDPELAATIGVDFKVKTISVDGNKAKLAI R F T F K V 2 0 0 4 0 0 1 1 0 1 1 1 0 3 1 0 3 0 0 1 0 0 19 0 2100.9892 Q9NP72;B7Z4P9;Q9BZT2;H0Y6T8 Q9NP72 28 46 RAB18 Ras-related protein Rab-18 yes no 2 3.7847E-17 106.58 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8659100 0 8659100 8659100 0 8659100 0 0 0 4503 2055 4623 11818;11819 18429;18430 18429 2 FTDDYQLFEELGK ______________________________ TRFTDDYQLFEELGKGAFSVVRRCVKKTST R F T G K G 0 0 0 2 0 1 2 1 0 0 2 1 0 2 0 0 1 0 1 0 0 0 13 0 1603.7406 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;B3KY86;B4DVQ3 Q5SWX3 10 22 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 1.6448E-05 99.522 2 1 1.3725 1.3932 21.488 3 Plateau 1.3796 1.3898 0.34046 2 0 Median 1.215 0.95793 NaN 1 0 Median 19152000 8973000 10179000 16857000 8097500 8759100 2295400 875570 1419800 4504 475 4624 11820;11821;11822 18431;18432;18433;18434;18435;18436 18431 6 FTDILVR LKKRLQLPVWEYKDRFTDILVRHQSFVLVG PVWEYKDRFTDILVRHQSFVLVGETGSGKT R F T V R H 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 7 0 862.49125 O43143;B4E0S6 O43143 146 152 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.012971 104.11 2 1.2442 1.0403 21.531 2 Median NaN NaN NaN 0 0 Median 1.2442 1.0403 21.531 2 0 Median 17706000 8269600 9435900 0 0 0 17706000 8269600 9435900 4505 1379 4625 11823;11824 18437;18438;18439 18438 3 FTEDSLLR KIETTVPPSGLNLNRFTEDSLLRHAQFVVE SGLNLNRFTEDSLLRHAQFVVEQVESYDEA R F T L R H 0 1 0 1 0 0 1 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 8 0 979.49746 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 607 614 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.010824 71.342 2 0.76062 0.78334 NaN 1 Median 0.76062 0.78334 NaN 1 0 Median NaN NaN NaN 0 0 Median 34770000 27080000 7690600 34770000 27080000 7690600 0 0 0 4506 222 4626 11825;11826 18440;18441;18442 18441 3 FTEEIPLK KSILEIMHKEAQDIKFTEEIPLKILAHNNF KEAQDIKFTEEIPLKILAHNNFVGRLIGKE K F T L K I 0 0 0 0 0 0 2 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 8 0 975.5277 O00425 O00425 273 280 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.0076936 81.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8765500 0 8765500 8765500 0 8765500 0 0 0 4507 1364 4627 11827 18443 18443 1 FTEFDAR QIKQWRKNLWIFVSKFTEFDARKLHKLYKH NLWIFVSKFTEFDARKLHKLYKHAIKKRQE K F T A R K 1 1 0 1 0 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 7 0 884.40283 O14646;B3KT33;A0A024RC75;O14647 O14646 1485 1491 CHD1;CHD2 Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 2 no no 2 0.020094 94.407 1 0.76255 0.88296 NaN 1 Median 0.76255 0.88296 NaN 1 0 Median NaN NaN NaN 0 0 Median 57286000 32853000 24433000 57286000 32853000 24433000 0 0 0 4508 1366;354 4628 11828 18444;18445 18445 2 FTEYETQVK KDLKTGHSKGFGFVRFTEYETQVKVMSQRH GFGFVRFTEYETQVKVMSQRHMIDGRWCDC R F T V K V 0 0 0 0 0 1 2 0 0 0 0 1 0 1 0 0 2 0 1 1 0 0 9 0 1143.5448 A0A087WX29;B4DRW3;A0A0A0N0L3;A0A024R4E2;Q13148;A0A087WXQ5;A0A087WV68;B1AKP7;G3V162;A0A087X260;A0A087WYY0;A0A087WW61;A0A087WX67;A0A087WXV3;K7EJM5;A0A0A0N0N3;A0A0A0N0M3;K7EN94 A0A087WX29 152 160 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2 0.0036023 71.379 2 3 1.6316 1.8291 NaN 1 Median 1.6316 1.8291 NaN 1 0 Median NaN NaN NaN 0 0 Median 139450000 25954000 113500000 134140000 25954000 108180000 5317900 0 5317900 4509 153 4629 11829;11830;11831;11832;11833 18446;18447;18448;18449;18450;18451 18446 6 FTEYSMTSSVMR AIADHLFWSEETKSRFTEYSMTSSVMRRNE KSRFTEYSMTSSVMRRNEQLTLHDERFEKF R F T M R R 0 1 0 0 0 0 1 0 0 0 0 0 2 1 0 3 2 0 1 1 0 0 12 0 1437.6268 Q96GA3;A0A075B6Q4 Q96GA3 240 251 LTV1 Protein LTV1 homolog yes no 2 0.0075132 57.532 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4510 1966 4630 11834 18452 18452 1812;1813 1 FTFGLDWVPK RFASFPDYLVIQIKKFTFGLDWVPKKLDVS IQIKKFTFGLDWVPKKLDVSIEMPEELDIS K F T P K K 0 0 0 1 0 0 0 1 0 0 1 1 0 2 1 0 1 1 0 1 0 0 10 0 1208.623 A0A140VJZ1;P45974;H7C5J3;A0A0A6YZ17;Q92995 A0A140VJZ1 576 585 USP5;USP13 Ubiquitin carboxyl-terminal hydrolase 5;Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 13 yes no 2 0.0033711 76.827 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4167400 0 4167400 4167400 0 4167400 0 0 0 4511 613 4631 11835 18453 18453 1 FTFLYVGDQLHLNPQVAK AEEAASMSVEERKAKFTFLYVGDQLHLNPQ LYVGDQLHLNPQVAKEAGIAAESLGEMAES K F T A K E 1 0 1 1 0 2 0 1 1 0 3 1 0 2 1 0 1 0 1 2 0 0 18 0 2089.0997 O96028;Q05CW4;D6R9V2 O96028 344 361 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 1.907E-06 73.498 2 2 1.2033 1.0843 25.691 4 Median 0.85742 0.8814 6.9477 2 0 Median 1.7105 1.3548 9.1364 2 0 Median 64731000 28219000 36512000 32729000 16627000 16102000 32003000 11592000 20410000 4512 1435 4632 11836;11837;11838;11839 18454;18455;18456;18457;18458;18459;18460 18454 7 FTFYDGPPFATGLPHYGHILAGTIK NCFQECLKQSKHKPKFTFYDGPPFATGLPH TGLPHYGHILAGTIKDIVTRYAHQSGFHVD K F T I K D 2 0 0 1 0 0 0 4 2 2 2 1 0 3 3 0 3 0 2 0 0 0 25 0 2719.3799 Q59G75;P41252;A0A0A0MSX9;Q7Z3U5;B4DVX2;Q5TCD1 Q59G75 58 82 IARS;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 4 1.1748E-08 51.857 2 2 1.6744 1.7637 72.999 3 Median 1.9431 1.9924 17.242 2 0 Median 0.73559 0.57277 NaN 1 0 Median 38388000 16899000 21489000 31286000 11195000 20092000 7101500 5704400 1397100 4513 1561 4633 11840;11841;11842;11843 18461;18462;18463;18464 18461 4 FTGNQIQNR DTLITKLMEKTKYIKFTGNQIQNRIIEVNQ KTKYIKFTGNQIQNRIIEVNQNQKQVEQDI K F T N R I 0 1 2 0 0 2 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 9 0 1076.5363 A0A024R784;O15164;B4DYZ9;Q6ZSA6 A0A024R784 286 294 TRIM24 Transcription intermediary factor 1-alpha yes no 2 0.0005967 101.64 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4514 217 4634 11844 18465 18465 1 FTIENVTR SRAIGRIAGKGGKTKFTIENVTRTRIVLAD GKGGKTKFTIENVTRTRIVLADVKVHILGS K F T T R T 0 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 8 0 978.51345 B2R823;Q9NRX1 B2R823 192 199 PNO1 RNA-binding protein PNO1 yes no 2 0.003342 97.093 2 2 1.1299 1.0909 13.25 4 Median 1.0726 1.2095 0.91798 2 0 Median 1.1845 0.96459 3.7315 2 0 Median 167920000 82647000 85268000 144910000 72365000 72541000 23010000 10282000 12728000 4515 858 4635 11845;11846;11847;11848 18466;18467;18468;18469;18470;18471;18472 18469 7 FTITPPTAQVVGVLK QPKNFWNGRWRSEWKFTITPPTAQVVGVLK FTITPPTAQVVGVLKIQVHYYEDGNVQLVS K F T L K I 1 0 0 0 0 1 0 1 0 1 1 1 0 1 2 0 3 0 0 3 0 0 15 0 1569.913 A8K0T9;A0A024R0E5;P52907 A8K0T9 179 193 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 2 0.00014645 79.659 1 1.3534 1.499 NaN 1 Median 1.3534 1.499 NaN 1 0 Median NaN NaN NaN 0 0 Median 46327000 19678000 26649000 46327000 19678000 26649000 0 0 0 4516 43 4636 11849 18473 18473 1 FTLAGHTK TQSKPTPVKPNYALKFTLAGHTKAVSSVKF KPNYALKFTLAGHTKAVSSVKFSPNGEWLA K F T T K A 1 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 8 0 873.47085 P61964;V9GYQ5;V9GZ59 P61964 39 46 WDR5 WD repeat-containing protein 5 yes no 2 0.0014971 108.46 1 2 1.2176 0.98259 14.888 3 Median 0.893 0.98259 NaN 1 0 Median 1.3709 1.102 18.859 2 0 Median 54995000 26263000 28732000 42617000 21145000 21473000 12378000 5118100 7259600 4517 1630 4637 11850;11851;11852 18474;18475;18476;18477;18478 18474 5 FTLDCTHPVEDGIMDAANFEQFLQER KLVAKGGKKKKQVLKFTLDCTHPVEDGIMD GIMDAANFEQFLQERIKVNGKAGNLGGGVV K F T E R I 2 1 1 3 1 2 3 1 1 1 2 0 1 3 1 0 2 0 0 1 0 0 26 0 3082.3801 Q7Z4W8;P35268 Q7Z4W8 21 46 RPL22 60S ribosomal protein L22 yes no 3 1.3344E-21 105.03 2 2 0.91214 0.86603 31.574 4 Median 1.0633 1.1624 6.805 2 0 Median 0.77898 0.6756 0.30351 2 0 Median 262080000 141720000 120360000 111410000 53242000 58172000 150660000 88473000 62189000 4518 1543 4638 11853;11854;11855;11856 18479;18480;18481;18482;18483;18484;18485;18486 18486 1301 8 FTLNPNPTGVQNPHIER LKLNFANPPFKSTARFTLNPNPTGVQNPHI LNPNPTGVQNPHIERLRTHSIESSGKLKIS R F T E R L 0 1 3 0 0 1 1 1 1 1 1 0 0 1 3 0 2 0 0 1 0 0 17 0 1932.9806 B4DH44;P45985 B4DH44 36 52 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 yes no 3 0.011688 34.87 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6212100 0 6212100 6212100 0 6212100 0 0 0 4519 973 4639 11857 18487 18487 1 FTLSGGNWNTVSETAK SDTPEEILTRIGSGKFTLSGGNWNTVSETA TLSGGNWNTVSETAKDLVSKMLHVDPHQRL K F T A K D 1 0 2 0 0 0 1 2 0 0 1 1 0 1 0 2 3 1 0 1 0 0 16 0 1710.8213 E9PGT3;Q15418 E9PGT3 623 638 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 yes no 2 0.013418 44.299 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4434300 0 4434300 4434300 0 4434300 0 0 0 4520 1235 4640 11858 18488 18488 1 FTLSSSR FYLSVYFFKKKTTSRFTLSSSRNKKHAKNN FKKKTTSRFTLSSSRNKKHAKNNFTCVACH R F T S R N 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 3 1 0 0 0 0 0 7 0 796.40792 A8K330;Q8IWA0 A8K330 191 197 WDR75 WD repeat-containing protein 75 yes no 2 0.014014 101.21 1 0.68787 0.73188 NaN 1 Median 0.68787 0.73188 NaN 1 0 Median NaN NaN NaN 0 0 Median 43104000 25110000 17993000 43104000 25110000 17993000 0 0 0 4521 716 4641 11859 18489 18489 1 FTLTQSEADADILFNFSHFK YTDVQQVASSLTHPRFTLTQSEADADILFN SEADADILFNFSHFKDYRKLSQERPGVLLN R F T F K D 2 0 1 2 0 1 1 0 1 1 2 1 0 4 0 2 2 0 0 0 0 0 20 0 2330.1219 A0A024R4U3;Q14166 A0A024R4U3 323 342 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 3 0.0063713 49.528 2 1.5325 1.5461 NaN 1 Median 1.5325 1.5461 NaN 1 0 Median NaN NaN NaN 0 0 Median 7907500 2808100 5099400 7907500 2808100 5099400 0 0 0 4522 161 4642 11860;11861 18490;18491 18491 1 FTLWWSPTINR TNAQRSGLNQIPNRRFTLWWSPTINRANVY PNRRFTLWWSPTINRANVYVGFQVQLDLTG R F T N R A 0 1 1 0 0 0 0 0 0 1 1 0 0 1 1 1 2 2 0 0 0 0 11 0 1419.7299 Q6P2Q9;B4DK16;Q6JH02;Q6JH03;I3L3Z8 Q6P2Q9 1534 1544 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00052901 74.464 2 0.87631 0.88888 6.6239 2 Median 0.87631 0.88888 6.6239 2 0 Median NaN NaN NaN 0 0 Median 31928000 17631000 14298000 31928000 17631000 14298000 0 0 0 4523 1854 4643 11862;11863 18492;18493;18494;18495;18496 18493 5 FTMDLDSDEDFSDFDEK PPRETEPRRAATKTKFTMDLDSDEDFSDFD MDLDSDEDFSDFDEKTDDEDFVPSDASPPK K F T E K T 0 0 0 6 0 0 2 0 0 0 1 1 1 3 0 2 1 0 0 0 0 0 17 0 2054.7939 P11388 P11388 1326 1342 TOP2A DNA topoisomerase 2-alpha yes yes 2 5.4373E-19 136.3 2 1.2278 1.3339 0.76652 2 Median 1.2278 1.3339 0.76652 2 0 Median NaN NaN NaN 0 0 Median 80349000 35219000 45130000 80349000 35219000 45130000 0 0 0 4524 1471 4644 11864;11865 18497;18498;18499;18500 18498 1198 4 FTNTQITEHYSTCIK SPSSRSIDISATIPKFTNTQITEHYSTCIK FTNTQITEHYSTCIKLSTENKITTKNAFGS K F T I K L 0 0 1 0 1 1 1 0 1 2 0 1 0 1 0 1 4 0 1 0 0 0 15 0 1841.8618 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470;C9JZP1 A8K4T8 102 116 NCAPH Condensin complex subunit 2 yes no 2;3 1.457E-30 157.56 4 2 0.81049 0.89808 27.473 6 Median 0.7675 0.91518 9.1653 4 0 Linear 1.6949 1.398 2.8654 2 0 Median 290480000 155920000 134560000 217850000 128930000 88920000 72625000 26989000 45636000 4525 740 4645 11866;11867;11868;11869;11870;11871 18501;18502;18503;18504;18505;18506;18507;18508;18509;18510;18511;18512;18513;18514;18515 18510 15 FTPGTFTNQIQAAFR LKFAAATGATPIAGRFTPGTFTNQIQAAFR FTPGTFTNQIQAAFREPRLLVVTDPRADHQ R F T F R E 2 1 1 0 0 2 0 1 0 1 0 0 0 3 1 0 3 0 0 0 0 0 15 0 1697.8526 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;Q96RS2 C9J9K3 103 117 RPSA 40S ribosomal protein SA yes no 2 4.3288E-58 192.5 2 2 1.6555 1.5901 21.644 4 Linear 1.6542 1.9286 2.8295 2 0 Median 1.539 1.3273 1.0801 2 0 Median 543450000 205260000 338200000 476410000 178260000 298140000 67045000 26991000 40054000 4526 119 4646 11872;11873;11874;11875 18516;18517;18518;18519;18520;18521;18522;18523;18524;18525 18517 10 FTPGTFTNQIQAAFREPR LKFAAATGATPIAGRFTPGTFTNQIQAAFR GTFTNQIQAAFREPRLLVVTDPRADHQPLT R F T P R L 2 2 1 0 0 2 1 1 0 1 0 0 0 3 2 0 3 0 0 0 0 0 18 1 2080.049 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;Q96RS2 C9J9K3 103 120 RPSA 40S ribosomal protein SA yes no 3 0.0014425 50.608 1 1.8329 1.5533 NaN 1 Median NaN NaN NaN 0 0 Median 1.8329 1.5533 NaN 1 0 Median 8788400 3105600 5682800 0 0 0 8788400 3105600 5682800 4527 119 4647 11876 18526 18526 0 FTQAGSEVSALLGR QEGQDVLLFIDNIFRFTQAGSEVSALLGRI RFTQAGSEVSALLGRIPSAVGYQPTLATDM R F T G R I 2 1 0 0 0 1 1 2 0 0 2 0 0 1 0 2 1 0 0 1 0 0 14 0 1434.7467 H0YH81;Q0QEN7;V9HW31;P06576;F8W0P7 H0YH81 248 261 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 2 0.0012627 77.062 1 1 0.80677 0.74382 90.743 2 Median 1.3972 1.413 NaN 1 0 Median 0.46586 0.39156 NaN 1 0 Median 18435000 7860400 10575000 15334000 5990800 9343500 3100800 1869600 1231200 4528 1292 4648 11877;11878 18527;18528 18527 1 FTQLDLEDVQVR KLNKITKFIEENKEKFTQLDLEDVQVREKL KEKFTQLDLEDVQVREKLKHATSKAKKLEK K F T V R E 0 1 0 2 0 2 1 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1461.7464 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 390 401 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.3965E-29 168.74 3 2 1.1722 1.1865 24.46 4 Median 0.81971 0.96111 1.2409 2 0 Median 1.6871 1.4675 1.5041 2 0 Median 1006800000 492150000 514610000 671220000 367300000 303910000 335540000 124850000 210700000 4529 2070 4649 11879;11880;11881;11882;11883 18529;18530;18531;18532;18533;18534;18535;18536;18537 18529 9 FTQQNYHDR YQIHRIRHFYMRKVKFTQQNYHDRLSQILT YMRKVKFTQQNYHDRLSQILTDFPKLDDIH K F T D R L 0 1 1 1 0 2 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 9 0 1207.537 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;O60747;Q5T3R7 Q8N4P8 51 59 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0024676 84.615 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4530 1183 4650 11884 18538 18538 1 FTQTSGETTDADKEPAGEDK RVQKVQVKEEPSAVKFTQTSGETTDADKEP GETTDADKEPAGEDKGIKALKESAKQTPAP K F T D K G 2 0 0 3 0 1 3 2 0 0 0 2 0 1 1 1 4 0 0 0 0 0 20 1 2125.9288 P46013 P46013 2742 2761 MKI67 Antigen KI-67 yes yes 2;3 5.7673E-203 285.94 4 3 2.3143 2.7024 13.153 7 Median 2.2502 2.6553 3.0659 4 0 Median 3.9203 3.3064 4.3994 3 0 Median 1173500000 326600000 846920000 871330000 266680000 604650000 302190000 59917000 242270000 4531 1569 4651 11885;11886;11887;11888;11889;11890;11891 18539;18540;18541;18542;18543;18544;18545;18546;18547;18548;18549;18550;18551;18552 18546 14 FTSDTKPIINK KLENDGSRKPGVIDKFTSDTKPIINKVASV VIDKFTSDTKPIINKVASVAENKGLFEEAA K F T N K V 0 0 1 1 0 0 0 0 0 2 0 2 0 1 1 1 2 0 0 0 0 0 11 1 1262.6871 Q8N1F7;A8K897;H3BVG0 Q8N1F7 601 611 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0014225 77.14 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4532 1904 4652 11892 18553 18553 1 FTTDDSICVLGISK WITAKLKEARGRGKKFTTDDSICVLGISKR KFTTDDSICVLGISKRNVIFQPVAELKKQT K F T S K R 0 0 0 2 1 0 0 1 0 2 1 1 0 1 0 2 2 0 0 1 0 0 14 0 1554.76 Q01813;Q8WTZ9;O14943;B1APP8;H0Y757;Q49A78 Q01813 711 724 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0039168 60.49 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13132000 4575500 8556100 13132000 4575500 8556100 0 0 0 4533 1677 4653 11893;11894 18554;18555 18554 2 FTTEEEVDYTVEK DEDLAHSSIRFGIGRFTTEEEVDYTVEKCI GRFTTEEEVDYTVEKCIQHVKRLREMSLKV R F T E K C 0 0 0 1 0 0 4 0 0 0 0 1 0 1 0 0 3 0 1 2 0 0 13 0 1588.7144 H7C0I5;H0YGN5;B4DNL7;Q5QP19;Q53FP3;B2R5S3;Q9Y697 H7C0I5 52 64 NFS1 Cysteine desulfurase, mitochondrial yes no 2 0.041897 41.109 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4920700 4920700 0 4920700 4920700 0 0 0 0 4534 834 4654 11895 18556 18556 1 FTVAELK EAPKLSKKKLRRMNRFTVAELKQLVARPDV KKLRRMNRFTVAELKQLVARPDVVEMHDVT R F T L K Q 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 7 0 806.4538 Q13435;Q7Z3K9;E9PPJ0 Q13435 460 466 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 2 0.03991 63.306 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14687000 0 14687000 14687000 0 14687000 0 0 0 4535 1713 4655 11896 18557 18557 1 FTVETACK RNGYGAKLCNIFSTKFTVETACKEYKHSFK CNIFSTKFTVETACKEYKHSFKQTWMNNMM K F T C K E 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 2 0 0 1 0 0 8 0 954.44807 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 170 177 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.011754 69.198 2 1.1611 0.91116 6.2818 2 Median NaN NaN NaN 0 0 Median 1.1611 0.91116 6.2818 2 0 Median 9463600 4548600 4914900 0 0 0 9463600 4548600 4914900 4536 1679 4656 11897;11898 18558;18559;18560;18561 18559 4 FTVETASR RNGYGAKLCNIFSTKFTVETASREYKKMFK CNIFSTKFTVETASREYKKMFKQTWMDNMG K F T S R E 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 8 0 909.4556 P11388 P11388 177 184 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0009698 122.13 2 2 0.96026 0.97836 12.934 4 Median 0.74052 0.87747 0.57194 2 0 Median 1.2601 1.0972 1.397 2 0 Median 2913600000 1590400000 1323200000 2481000000 1396700000 1084300000 432530000 193640000 238890000 4537 1471 4657 11899;11900;11901;11902 18562;18563;18564;18565;18566;18567;18568;18569 18564 8 FTVETR PGIEPTGNMVKKRAEFTVETRSAGQGEVLV GNMVKKRAEFTVETRSAGQGEVLVYVEDPA E F T T R S 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 2 0 0 1 0 0 6 0 751.38645 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 304 309 FLNA;FLJ00119 Filamin-A no no 2 0.033955 86.121 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4538 1504 4658 11903 18570 18570 1 FTVLFPSGTPLPAR RDILVKGVDESGASRFTVLFPSGTPLPARR RFTVLFPSGTPLPARRQHTLQAPGSISSVC R F T A R R 1 1 0 0 0 0 0 1 0 0 2 0 0 2 3 1 2 0 0 1 0 0 14 0 1501.8293 Q0VDF9 Q0VDF9 412 425 HSPA14 Heat shock 70 kDa protein 14 yes yes 2 7.8285E-07 110.38 2 1 1.7705 1.7693 36.334 3 Plateau 1.7671 1.765 8.6011 2 0 Median 1.0929 0.94903 NaN 1 0 Median 35413000 14288000 21124000 33206000 13465000 19741000 2206900 823420 1383500 4539 1697 4659 11904;11905;11906 18571;18572;18573;18574;18575 18574 5 FTVPMLK EEELKTHISKGTLGKFTVPMLKEACRAYGL ISKGTLGKFTVPMLKEACRAYGLKSGLKKQ K F T L K E 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 1 0 0 7 0 834.46735 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 576 582 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 0.023663 55.604 4 0.57428 0.64174 4.6402 3 Median 0.57428 0.64174 4.6402 3 0 Median NaN NaN NaN 0 0 Median 238200000 161030000 77170000 238200000 161030000 77170000 0 0 0 4540 82 4660 11907;11908;11909;11910 18576;18577;18578;18579;18580;18581;18582 18576 78 7 FTVVVLR DPYQHIIVEHQYSHKFTVVVLRATKVTKGA VEHQYSHKFTVVVLRATKVTKGAFGDMLDT K F T L R A 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 3 0 0 7 0 832.51707 A8K2S1;P47712;B4DZI4;Q14064 A8K2S1 20 26 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes no 2 0.031504 67.035 1 3.1981 3.3498 NaN 1 Median 3.1981 3.3498 NaN 1 0 Median NaN NaN NaN 0 0 Median 12554000 3294700 9259100 12554000 3294700 9259100 0 0 0 4541 712 4661 11911 18583 18583 1 FTYAGCLSVK GKKCSKTKKSPEPVRFTYAGCLSVKKYRPK PEPVRFTYAGCLSVKKYRPKYCGSCVDGRC R F T V K K 1 0 0 0 1 0 0 1 0 0 1 1 0 1 0 1 1 0 1 1 0 0 10 0 1144.5587 B4DI61;Q6FI18;O00622;Q53FA4;Q9UID7 B4DI61 274 283 CYR61 Protein CYR61 yes no 2 0.00086727 89.08 1 2 0.94075 0.7575 0.78319 2 Median NaN NaN NaN 0 0 Median 0.94075 0.7575 0.78319 2 0 Median 80608000 60195000 20413000 39153000 39153000 0 41455000 21042000 20413000 4542 979 4662 11912;11913;11914 18584;18585;18586;18587 18584 4 FVADGIFK ______________________________ QISKKRKFVADGIFKAELNEFLTRELAEDG K F V F K A 1 0 0 1 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 1 0 0 8 0 895.48035 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;E9PK82;E9PQX2 P23396 11 18 RPS3 40S ribosomal protein S3 yes no 2 0.016959 60.76 2 1 1.125 1.3259 22.107 3 Median 1.144 1.336 1.0781 2 0 Median 1.1026 0.91122 NaN 1 0 Median 546520000 253020000 293500000 534810000 247120000 287690000 11709000 5898600 5810800 4543 1511 4663 11915;11916;11917 18588;18589;18590;18591;18592;18593 18588 6 FVASCGFTPDVK NQMNNTHAAVSPCGRFVASCGFTPDVKVWE CGRFVASCGFTPDVKVWEVCFGKKGEFQEV R F V V K V 1 0 0 1 1 0 0 1 0 0 0 1 0 2 1 1 1 0 0 2 0 0 12 0 1326.6278 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;B4DY59 E9PF19 207 218 TBL2 Transducin beta-like protein 2 yes no 2 0.00031986 94.692 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4764900 4764900 0 4764900 4764900 0 0 0 0 4544 582 4664 11918;11919;11920;11921;11922 18594;18595;18596;18597;18598 18597 5 FVCEGTVEEK RIYRVGQQKDVVIHRFVCEGTVEEKILQLQ VVIHRFVCEGTVEEKILQLQEKKKDLAKQV R F V E K I 0 0 0 0 1 0 3 1 0 0 0 1 0 1 0 0 1 0 0 2 0 0 10 0 1196.5383 A0A024R0F1;Q9UNY4;X6RI15 A0A024R0F1 1116 1125 TTF2 Transcription termination factor 2 yes no 2 1.6519E-05 104.2 2 1 1.4464 1.1673 NaN 1 Median NaN NaN NaN 0 0 Median 1.4464 1.1673 NaN 1 0 Median 13545000 12113000 1431600 11000000 11000000 0 2544700 1113200 1431600 4545 44 4665 11923;11924;11925 18599;18600;18601 18599 3 FVCIYHVR YSADGHSILAGGMSKFVCIYHVREQILMKR LAGGMSKFVCIYHVREQILMKRFEISCNLS K F V V R E 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 2 0 0 8 0 1092.5539 Q15269;A0A0B4J2E5 Q15269 628 635 PWP2 Periodic tryptophan protein 2 homolog yes no 3 0.00064296 91.906 2 0.82939 0.82683 4.3067 2 Median 0.82939 0.82683 4.3067 2 0 Median NaN NaN NaN 0 0 Median 24227000 11437000 12790000 24227000 11437000 12790000 0 0 0 4546 1756 4666 11926;11927 18602;18603;18604 18602 3 FVDEGSLYGLSIATSR EVYVWDVNSRKCLNRFVDEGSLYGLSIATS VDEGSLYGLSIATSRNGQYVACGSNCGVVN R F V S R N 1 1 0 1 0 0 1 2 0 1 2 0 0 1 0 3 1 0 1 1 0 0 16 0 1713.8574 B2RAX6;Q9Y5J1;J3KSR7;J3QR85;J3QRG0;J3QLD6 B2RAX6 396 411 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 3.4696E-12 118.37 2 2 1.0759 1.0716 7.4781 4 Median 0.88519 1.0003 3.5599 2 0 Median 1.3065 1.1319 1.5702 2 0 Median 314860000 160850000 154010000 215010000 116500000 98511000 99848000 44346000 55502000 4547 876 4667 11928;11929;11930;11931 18605;18606;18607;18608;18609;18610;18611;18612;18613;18614;18615;18616;18617;18618;18619;18620;18621 18611 17 FVDFNDPNFGDELK PKNYSIAQKRALFFRFVDFNDPNFGDELKA RFVDFNDPNFGDELKAKVLQHILNPAFLYS R F V L K A 0 0 2 3 0 0 1 1 0 0 1 1 0 3 1 0 0 0 0 1 0 0 14 0 1655.7468 F2Z2U4;Q59FH1;H0Y4W2;Q9Y4A5 F2Z2U4 1737 1750 TRRAP Transformation/transcription domain-associated protein yes no 2 0.049419 40.496 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4548 1253 4668 11932 18622 18622 1 FVDGLMIHSGDPVNYYVDTAVR VVSGKLRGQRAKSMKFVDGLMIHSGDPVNY HSGDPVNYYVDTAVRHVLLRQGVLGIKVKI K F V V R H 1 1 1 3 0 0 0 2 1 1 1 0 1 1 1 1 1 0 2 4 0 0 22 0 2467.1842 P23396;Q53G83;E9PL09;H0YEU2;A7E2S3;Q9NQS8;E9PSF4 P23396 152 173 RPS3 40S ribosomal protein S3 yes no 3 1.8057E-16 107.57 2 3 1.0787 1.0621 56.2 4 Median 1.5052 1.734 2.3065 2 0 Median 0.7816 0.65533 1.2606 2 0 Median 449180000 187870000 261310000 399310000 164630000 234680000 49872000 23243000 26629000 4549 1511 4669;4670 11933;11934;11935;11936;11937 18623;18624;18625;18626;18627;18628 18623 1281 6 FVDGLTFK LDRVKLSFSMSLLSRFVDGLTFKVNFTFNR SMSLLSRFVDGLTFKVNFTFNRQPLRVQHR R F V F K V 0 0 0 1 0 0 0 1 0 0 1 1 0 2 0 0 1 0 0 1 0 0 8 0 925.49092 B7Z700;Q5JR04;Q9HCE1;Q9H8T8 B7Z700 375 382 MOV10 Putative helicase MOV-10 yes no 2 0.041092 46.994 1 1.2987 1.2752 NaN 1 Median 1.2987 1.2752 NaN 1 0 Median NaN NaN NaN 0 0 Median 8766400 3429000 5337400 8766400 3429000 5337400 0 0 0 4550 1102 4671 11938 18629 18629 1 FVDGVSTVAR KEGMFNNANVLFKTKFVDGVSTVARFTQCQ LFKTKFVDGVSTVARFTQCQNGKISKEAKS K F V A R F 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 3 0 0 10 0 1049.5506 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1 A0A024R158 1161 1170 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.00013082 96.331 3 2 1.2718 1.2707 14.334 5 Median 1.0419 1.235 5.4086 3 0 Median 1.8099 1.5639 1.2379 2 0 Median 1090200000 552520000 537680000 1013800000 525240000 488550000 76420000 27284000 49136000 4551 69 4672 11939;11940;11941;11942;11943 18630;18631;18632;18633;18634;18635;18636;18637;18638;18639;18640;18641;18642;18643 18632 14 FVDILGLR DHAMIGPEGTDNCHKFVDILGLRTIFPLFM GTDNCHKFVDILGLRTIFPLFMKSPRKIKK K F V L R T 0 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 0 0 0 1 0 0 8 0 931.5491 A0A087WUB9;Q8WYA6 A0A087WUB9 378 385 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.0063187 81.784 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3955800 2012400 1943300 3955800 2012400 1943300 0 0 0 4552 409 4673 11944;11945;11946;11947 18644;18645;18646;18647 18647 4 FVDILTNWYVR MAAYRLYTVVPRLVKFVDILTNWYVRMNRR RLVKFVDILTNWYVRMNRRRLKGENGMEDC K F V V R M 0 1 1 1 0 0 0 0 0 1 1 0 0 1 0 0 1 1 1 2 0 0 11 0 1424.7452 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2 Q59G75 743 753 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 7.8582E-05 95.502 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5468500 0 5468500 5468500 0 5468500 0 0 0 4553 1561 4674 11948;11949 18648;18649 18649 2 FVDLYGAQK VFGLGFPPCLGGPFRFVDLYGAQKIVDRLK LGGPFRFVDLYGAQKIVDRLKKYEAAYGKQ R F V Q K I 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1039.5338 E9KL44;P40939;B4DRH6;B4DDZ5;H0YFD6 E9KL44 720 728 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.0011494 89.296 2 2 1.1189 1.1562 13.21 4 Linear 1.0916 1.1105 9.4728 2 0 Median 1.1464 0.91752 8.325 2 0 Median 62158000 30494000 31664000 57636000 28122000 29514000 4522000 2372100 2149900 4554 1228 4675 11950;11951;11952;11953 18650;18651;18652;18653;18654;18655;18656 18652 7 FVDPNTQEK DIYALISDQKHMRKRFVDPNTQEKVSYREL KHMRKRFVDPNTQEKVSYRELQERCRPQED R F V E K V 0 0 1 1 0 1 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 9 0 1076.5138 A0A075B730;A0A087X1U6;P58107 A0A075B730 2029 2037 EPPK1 Epiplakin no no 2 0.042566 49.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7046800 0 7046800 7046800 0 7046800 0 0 0 4555 397;1622 4676 11954 18657 18657 1 FVEGTNINR AGSERASTSGAKGTRFVEGTNINRSLLALG GAKGTRFVEGTNINRSLLALGNVINALADS R F V N R S 0 1 2 0 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 9 0 1048.5302 B2R6H3;Q8NI77;Q4G194 B2R6H3 275 283 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 0.047679 38.962 1 1.5245 1.3081 NaN 1 Median NaN NaN NaN 0 0 Median 1.5245 1.3081 NaN 1 0 Median 1068400 582400 486040 0 0 0 1068400 582400 486040 4556 842 4677 11955 18658 18658 1 FVEGVCPFCGYEEAR EQLRCEHCARFLADRFVEGVCPFCGYEEAR FVEGVCPFCGYEEARGDQCDKCGKLINAVE R F V A R G 1 1 0 0 2 0 3 2 0 0 0 0 0 2 1 0 0 0 1 2 0 0 15 0 1818.7705 A8K492;P56192;B4DF61;B4E0E9;H0YIC2 A8K492 400 414 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.00012712 89.301 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4557 732 4678 11956 18659 18659 1 FVELPGAEMGK TKARVAPEKKQDVGKFVELPGAEMGKVTVR DVGKFVELPGAEMGKVTVRFPPEASGYLHI K F V G K V 1 0 0 0 0 0 2 2 0 0 1 1 1 1 1 0 0 0 0 1 0 0 11 0 1176.5849 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 187 197 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0011246 67.207 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24717000 0 24717000 24717000 0 24717000 0 0 0 4558 1454 4679 11957;11958 18660;18661 18661 1160 2 FVESQVESESSVLNDSPFPEDDSEGLHSDSR TREDPKENRKTKKEKFVESQVESESSVLND PFPEDDSEGLHSDSREEKQNTKSARERAGQ K F V S R E 0 1 1 4 0 1 5 1 1 0 2 0 0 2 2 8 0 0 0 3 0 0 31 0 3423.4862 Q99549;B3KS10;A0A0A0MT47 Q99549 257 287 MPHOSPH8 M-phase phosphoprotein 8 yes no 3 1.3351E-12 56.46 1 1 1.2178 1.1249 46.376 2 Median 0.81707 0.81041 NaN 1 0 Median 1.8152 1.5615 NaN 1 0 Median 22821000 11209000 11611000 15867000 8177800 7689400 6953600 3031500 3922100 4559 1994 4680 11959;11960 18662;18663;18664 18663 3 FVEVGR ______________________________ ______________________________ R F V G R V 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 6 0 705.38097 E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914;A8K3Q9 A8K3Q9 6 11 RPL14 60S ribosomal protein L14 no no 2 0.060836 83.229 2 0.89686 0.7777 6.7601 2 Median NaN NaN NaN 0 0 Median 0.89686 0.7777 6.7601 2 0 Median 119050000 61507000 57544000 0 0 0 119050000 61507000 57544000 4560 645;725 4681 11961;11962 18665;18666 18665 2 FVFFNIPQIQYK VNYNTHGELGEGARKFVFFNIPQIQYKNPW ARKFVFFNIPQIQYKNPWVQIMMFKNMTPS K F V Y K N 0 0 1 0 0 2 0 0 0 2 0 1 0 3 1 0 0 0 1 1 0 0 12 0 1542.8235 P82663;E7EPW2 P82663 47 58 MRPS25 28S ribosomal protein S25, mitochondrial yes no 2 1.0415E-12 131.06 2 1.4811 1.5204 1.8166 2 Median 1.4811 1.5204 1.8166 2 0 Median NaN NaN NaN 0 0 Median 28620000 12552000 16067000 28620000 12552000 16067000 0 0 0 4561 1667 4682 11963;11964 18667;18668;18669;18670;18671 18671 5 FVFGTTPEDILR GGVNDNFQGVLQNVRFVFGTTPEDILRNKG NVRFVFGTTPEDILRNKGCSSSTSVLLTLD R F V L R N 0 1 0 1 0 0 1 1 0 1 1 0 0 2 1 0 2 0 0 1 0 0 12 0 1393.7242 A0PJG0;CON__Q28194;A0A024R9Q1;P07996 A0PJG0 217 228 THBS1 Thrombospondin-1 yes no 2 0.0001947 77.677 3 0.6713 0.69908 NaN 1 Median 0.6713 0.69908 NaN 1 0 Median NaN NaN NaN 0 0 Median 8485400 5865100 2620300 8485400 5865100 2620300 0 0 0 + 4562 286 4683 11965;11966;11967 18672;18673;18674;18675 18672 4 FVFMLSTR RQDSINAYNEPNSTKFVFMLSTRAGGLGIN NEPNSTKFVFMLSTRAGGLGINLATADVVI K F V T R A 0 1 0 0 0 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 0 8 0 999.52117 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 553 560 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.012378 54.157 2 3 5.2686 4.6012 NaN 1 Median NaN NaN NaN 0 0 Median 5.2686 4.6012 NaN 1 0 Median 28600000 449460 28151000 22598000 0 22598000 6002200 449460 5552700 4563 1391 4684;4685 11968;11969;11970;11971;11972 18676;18677;18678;18679;18680;18681 18676 1063 6 FVGGVYGGNIK GLTAELVVDKAMELRFVGGVYGGNIKPTPF MELRFVGGVYGGNIKPTPFLCLTLKMLQIQ R F V I K P 0 0 1 0 0 0 0 4 0 1 0 1 0 1 0 0 0 0 1 2 0 0 11 0 1109.5869 Q8NAV1 Q8NAV1 56 66 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2 0.021191 52.786 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7838400 7838400 0 7838400 7838400 0 0 0 0 4564 1917 4686 11973 18682 18682 1 FVGQDVEGER VNPVWKKCLEEQGLKFVGQDVEGERMEIVE EQGLKFVGQDVEGERMEIVELEDHPFFVGV K F V E R M 0 1 0 1 0 1 2 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 10 0 1134.5306 P17812;B4E1E0 P17812 499 508 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.010458 53.327 1 1.7226 1.8695 NaN 1 Median 1.7226 1.8695 NaN 1 0 Median NaN NaN NaN 0 0 Median 28052000 10582000 17470000 28052000 10582000 17470000 0 0 0 4565 1494 4687 11974 18683 18683 1 FVIATSTK PLVLNRVPLRRTHQKFVIATSTKIDISNVK LRRTHQKFVIATSTKIDISNVKIPKHLTDA K F V T K I 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 8 0 865.49092 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 193 200 RPL6 60S ribosomal protein L6 yes no 2 0.011463 75.213 3 2 0.81585 0.67987 2.1079 2 Median NaN NaN NaN 0 0 Median 0.81585 0.67987 2.1079 2 0 Median 567240000 525030000 42209000 477010000 477010000 0 90227000 48018000 42209000 4566 342 4688 11975;11976;11977;11978;11979 18684;18685;18686;18687;18688;18689 18685 6 FVIGGPQGDAGLTGR YLDEDTIYHLQPSGRFVIGGPQGDAGLTGR FVIGGPQGDAGLTGRKIIVDTYGGWGAHGG R F V G R K 1 1 0 1 0 1 0 5 0 1 1 0 0 1 1 0 1 0 0 1 0 0 15 0 1443.747 A0A140VJP5;P31153;B4DEX8 A0A140VJP5 250 264 MAT2A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase yes no 2 4.3705E-05 85.845 2 2 1.2874 1.2791 39.459 4 Median 1.6651 1.8813 18.14 2 0 Median 1.155 0.97374 2.1399 2 0 Median 148530000 57733000 90792000 132160000 49926000 82229000 16370000 7806700 8563100 4567 606 4689 11980;11981;11982;11983 18690;18691;18692;18693;18694;18695;18696;18697;18698 18694 9 FVIHCNSPVWGADK VAGAAVSAGHGLPAKFVIHCNSPVWGADKC KFVIHCNSPVWGADKCEELLEKTVKNCLAL K F V D K C 1 0 1 1 1 0 0 1 1 1 0 1 0 1 1 1 0 1 0 2 0 0 14 0 1628.7769 O75367;Q59FH0;B4DJC3 O75367 272 285 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 2.4267E-21 146.36 4 4 1.2347 1.002 11.288 7 Median 0.88335 1.002 7.3709 3 0 Plateau 1.2491 1.0311 11.105 4 0 Median 450960000 255000000 195960000 339180000 209870000 129310000 111780000 45126000 66651000 4568 1401 4690 11984;11985;11986;11987;11988;11989;11990;11991 18699;18700;18701;18702;18703;18704;18705;18706;18707;18708;18709;18710;18711;18712;18713;18714 18707 16 FVINYDYPNSSEDYIHR ATDVASRGLDVEDVKFVINYDYPNSSEDYI INYDYPNSSEDYIHRIGRTARSTKTGTAYT K F V H R I 0 1 2 2 0 0 1 0 1 2 0 0 0 1 1 2 0 0 3 1 0 0 17 0 2130.9647 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 401 417 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 3 2.0433E-05 73.252 2 2 1.1383 1.0867 29.654 4 Median 1.2496 1.4188 9.8575 2 0 Median 1.0375 0.85946 5.3259 2 0 Median 163980000 79428000 84547000 130320000 62655000 67669000 33652000 16774000 16878000 4569 1009 4691 11992;11993;11994;11995 18715;18716;18717;18718;18719;18720;18721 18716 7 FVINYDYPNSSEDYVHR ATDVASRGLDVEDVKFVINYDYPNSSEDYV INYDYPNSSEDYVHRIGRTARSTNKGTAYT K F V H R I 0 1 2 2 0 0 1 0 1 1 0 0 0 1 1 2 0 0 3 2 0 0 17 0 2116.949 Q59F66;Q92841 Q59F66 491 507 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3 0.0052291 27.271 2 1.0228 0.86466 6.0133 2 Median NaN NaN NaN 0 0 Median 1.0228 0.86466 6.0133 2 0 Median 13136000 6405700 6730100 0 0 0 13136000 6405700 6730100 4570 1801 4692 11996;11997 18722;18723;18724;18725 18722 4 FVIQGAGAK MEDPGVRDTMLQALRFVIQGAGAKVDAVIR MLQALRFVIQGAGAKVDAVIRKNIVSLLLS R F V A K V 2 0 0 0 0 1 0 2 0 1 0 1 0 1 0 0 0 0 0 1 0 0 9 0 889.50215 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2410 2418 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.011876 65.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14006000 0 14006000 14006000 0 14006000 0 0 0 4571 1205 4693 11998 18726 18726 1 FVITTTSR RACVCQTLGISPEEKFVITTTSRKEITCDN GISPEEKFVITTTSRKEITCDNFDETVKDG K F V S R K 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 3 0 0 1 0 0 8 0 923.50763 A6NHR9 A6NHR9 72 79 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.017078 60.682 2 1 1.0499 1.1437 17.361 3 Plateau 1.0534 1.121 3.5525 2 0 Median 0.92279 0.83251 NaN 1 0 Median 58118000 28596000 29521000 55894000 27380000 28514000 2223500 1216100 1007400 4572 684 4694 11999;12000;12001 18727;18728;18729 18727 3 FVLDHEDGLNLNEDLENFLQK QFEYKIQAELAVILKFVLDHEDGLNLNEDL DGLNLNEDLENFLQKAPVPSTCSSTFPEEL K F V Q K A 0 0 3 3 0 1 3 1 1 0 5 1 0 2 0 0 0 0 0 1 0 0 21 0 2501.2074 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;G1UI36;F5H2F3;F5H3L6;F5H0Z7;F5H763;Q86XH4;A8K394;Q4LE64;Q14980 Q4LE64 133 153 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 5.3888E-16 105.79 3 2 0.96526 0.97809 21.769 5 Median 0.96526 1.0062 3.048 3 0 Plateau 1.4554 1.207 36.59 2 0 Median 134790000 59199000 75586000 51089000 21759000 29329000 83696000 37440000 46256000 4573 186;1747;718 4695 12002;12003;12004;12005;12006 18730;18731;18732;18733;18734;18735;18736;18737 18731 8 FVLEWTWNK RWITEEQPNSATNLRFVLEWTWNKVVLTKE SATNLRFVLEWTWNKVVLTKEEFDRLCVPL R F V N K V 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 1 2 0 1 0 0 9 0 1221.6182 Q8WYP5;Q96M44 Q8WYP5 582 590 AHCTF1 Protein ELYS yes no 2 0.003664 71.223 1 2 2.1308 1.7192 36.163 3 Median 0.99131 0.985 NaN 1 0 Median 2.243 1.8265 8.5636 2 0 Median 11100000 4767900 6331700 6157000 3208500 2948400 4942600 1559300 3383300 4574 1945 4696 12007;12008;12009 18738;18739;18740;18741;18742 18738 5 FVLNLIK QIIEEDAALVEIGPRFVLNLIKIFQGSFGG ALVEIGPRFVLNLIKIFQGSFGGPTLYENP R F V I K I 0 0 1 0 0 0 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 845.53747 Q8TDN6;A0JLQ5 Q8TDN6 236 242 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.010245 111.69 3 1 0.9948 1.146 2.2612 3 Median 0.97678 1.1476 3.1956 2 0 Median 1.3916 1.146 NaN 1 0 Median 692460000 339790000 352670000 652050000 321820000 330230000 40409000 17968000 22441000 4575 1934 4697 12010;12011;12012;12013 18743;18744;18745;18746;18747;18748;18749;18750;18751;18752 18750 10 FVNLGIEPPK KLREVVETPLLHPERFVNLGIEPPKGVLLF LHPERFVNLGIEPPKGVLLFGPPGTGKTLC R F V P K G 0 0 1 0 0 0 1 1 0 1 1 1 0 1 2 0 0 0 0 1 0 0 10 0 1112.623 A0A140VK70;P35998;Q75L23 A0A140VK70 201 210 PSMC2 26S protease regulatory subunit 7 yes no 2 0.0047705 71.349 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11613000 0 11613000 11613000 0 11613000 0 0 0 4576 620 4698 12014;12015 18753;18754 18753 2 FVNVVPTFGK KKTGRAKRRMQYNRRFVNVVPTFGKKKGPN QYNRRFVNVVPTFGKKKGPNANS_______ R F V G K K 0 0 1 0 0 0 0 1 0 0 0 1 0 2 1 0 1 0 0 3 0 0 10 0 1106.6124 E9PR30;P62861 E9PR30 81 90 FAU 40S ribosomal protein S30 yes no 2 2.7898E-09 126.07 9 2 0.74228 0.77645 23.097 7 Median 0.80756 0.80555 12.993 5 0 Plateau 0.63509 0.55654 3.9675 2 0 Median 7304500000 4068000000 3236500000 6704900000 3703300000 3001600000 599590000 364700000 234900000 4577 1250 4699 12016;12017;12018;12019;12020;12021;12022;12023;12024;12025;12026 18755;18756;18757;18758;18759;18760;18761;18762;18763;18764;18765;18766;18767;18768;18769;18770;18771;18772;18773;18774;18775;18776;18777;18778;18779;18780;18781;18782;18783;18784;18785;18786 18756 31 FVNVVPTFGKK KKTGRAKRRMQYNRRFVNVVPTFGKKKGPN YNRRFVNVVPTFGKKKGPNANS________ R F V K K K 0 0 1 0 0 0 0 1 0 0 0 2 0 2 1 0 1 0 0 3 0 0 11 1 1234.7074 E9PR30;P62861 E9PR30 81 91 FAU 40S ribosomal protein S30 yes no 3 0.038925 22.329 1 0.62851 0.53383 NaN 1 Median NaN NaN NaN 0 0 Median 0.62851 0.53383 NaN 1 0 Median 5915500 3034100 2881500 0 0 0 5915500 3034100 2881500 4578 1250 4700 12027 18787 18787 1 FVNWQVDGEYR PGLRSKMAIQTQQSKFVNWQVDGEYRGSDF QQSKFVNWQVDGEYRGSDFTAAVTLGNPDV K F V Y R G 0 1 1 1 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 2 0 0 11 0 1411.6521 O96008;K7EKG4;K7EJ57 O96008 185 195 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 2.8475E-06 111.61 2 1 1.3684 1.4719 13.61 2 Median 1.3684 1.4719 13.61 2 0 Median NaN NaN NaN 0 0 Median 85584000 37984000 47600000 82157000 37984000 44172000 3427300 0 3427300 4579 1433 4701 12028;12029;12030 18788;18789;18790 18789 3 FVPAEMGTHTVSVK EAEIVEGENHTYCIRFVPAEMGTHTVSVKY RFVPAEMGTHTVSVKYKGQHVPGSPFQFTV R F V V K Y 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 2 0 0 3 0 0 14 0 1501.7599 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5C6;Q2VP91 P21333 2202 2215 FLNA;FLJ00119 Filamin-A yes no 2 0.0030379 52.247 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8005300 0 8005300 8005300 0 8005300 0 0 0 4580 1504 4702 12031 18791 18791 1266 1 FVPLLPGNR PQTECRHKSIELFYKFVPLLPGNRSPNLWL IELFYKFVPLLPGNRSPNLWLKDVLKEEGV K F V N R S 0 1 1 0 0 0 0 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 9 0 1011.5866 P78527 P78527 1194 1202 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0061961 64.803 2 1 0.44353 0.42997 68.645 2 Median 0.60506 0.69862 NaN 1 0 Median 0.32513 0.26463 NaN 1 0 Median 167080000 112220000 54864000 157340000 105000000 52345000 9736600 7217200 2519400 4581 1665 4703 12032;12033;12034 18792;18793;18794;18795 18792 4 FVPQDVPPEPK DGTKRSRRQIKEPVKFVPQDVPPEPKKIPI EPVKFVPQDVPPEPKKIPIRNTRTRGRKRS K F V P K K 0 0 0 1 0 1 1 0 0 0 0 1 0 1 4 0 0 0 0 2 0 0 11 0 1251.6499 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 810 820 PHF14 PHD finger protein 14 yes no 2 0.017321 45.368 1 1 1.0503 0.9659 74.614 2 Median 0.56931 0.5699 NaN 1 0 Median 1.9377 1.6371 NaN 1 0 Median 15940000 9418500 6521700 13965000 8864400 5101000 1974800 554090 1420700 4582 590 4704 12035;12036 18796;18797 18796 2 FVPYLIAGIQHSCQDIGAK QGVSGAVQDKGSIHKFVPYLIAGIQHSCQD LIAGIQHSCQDIGAKSLTQVRAMMYSGELK K F V A K S 2 0 0 1 1 2 0 2 1 3 1 1 0 1 1 1 0 0 1 1 0 0 19 0 2116.0775 H0Y4R1;P12268 H0Y4R1 412 430 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3 2.8183E-06 74.519 1 2 1.4474 1.2527 5.6999 3 Median 1.1666 1.2902 NaN 1 0 Median 1.4862 1.2032 5.7006 2 0 Median 63578000 27621000 35957000 45159000 19478000 25681000 18419000 8142600 10276000 4583 1282 4705 12037;12038;12039 18798;18799;18800;18801;18802;18803 18800 6 FVQCPDGELQK FTRARDYDAMGSQTKFVQCPDGELQKRKEV SQTKFVQCPDGELQKRKEVVHTVSLHEIDV K F V Q K R 0 0 0 1 1 2 1 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1319.618 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 224 234 RUVBL2 RuvB-like 2 yes no 2 3.8163E-05 85.676 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21816000 21816000 0 21816000 21816000 0 0 0 0 4584 2120 4706 12040;12041 18804;18805;18806 18806 3 FVQETELSQR LVRRNVELFIATSQKFVQETELSQRIRDWE ATSQKFVQETELSQRIRDWEDTVQPLLQEQ K F V Q R I 0 1 0 0 0 2 2 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 10 0 1235.6146 A0A0A6YYG7;Q6IBW4;H0YC55 A0A0A6YYG7 485 494 NCAPH2 Condensin-2 complex subunit H2 yes no 2 1.7074E-09 118.18 2 2 2.039 1.6994 31.826 3 Median 0.90917 0.99949 NaN 1 0 Median 2.0466 1.7327 2.7469 2 0 Median 77427000 24364000 53063000 64203000 19619000 44583000 13224000 4744500 8479500 4585 491 4707 12042;12043;12044;12045 18807;18808;18809;18810;18811;18812;18813 18807 7 FVQLEGAHPLEK PSFQVKELALSALLKFVQLEGAHPLEKSKW LLKFVQLEGAHPLEKSKWEGNYLFPRELFK K F V E K S 1 0 0 0 0 1 2 1 1 0 2 1 0 1 1 0 0 0 0 1 0 0 12 0 1366.7245 Q9BVI4;F5H303 Q9BVI4 125 136 NOC4L Nucleolar complex protein 4 homolog yes no 2 0.0022647 68.626 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12024000 0 12024000 12024000 0 12024000 0 0 0 4586 2007 4708 12046;12047 18814;18815 18815 2 FVSFLGR QPPIDNIIRAGLIPKFVSFLGRTDCSPIQF IRAGLIPKFVSFLGRTDCSPIQFESAWALT K F V G R T 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 0 0 0 1 0 0 7 0 824.45447 Q7Z726;A8K7D9;P52292;J3QLL0;J3KS65 Q7Z726 124 130 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.0092764 126.68 2 1.1365 1.243 3.0574 2 Median 1.1365 1.243 3.0574 2 0 Median NaN NaN NaN 0 0 Median 89078000 46639000 42440000 89078000 46639000 42440000 0 0 0 4587 769 4709 12048;12049 18816;18817;18818 18818 3 FVSTTSQNTQLVR TVKSNRSSNMTATTKFVSTTSQNTQLVRPP TKFVSTTSQNTQLVRPPIRSHHSNTRDTVK K F V V R P 0 1 1 0 0 2 0 0 0 0 1 0 0 1 0 2 3 0 0 2 0 0 13 0 1479.7682 B2RMQ4;Q8WWK9 B2RMQ4 241 253 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.0002806 87.789 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2534500 2534500 0 2534500 2534500 0 0 0 0 4588 895 4710 12050 18819 18819 1 FVSTTSQNTQLVRPPIR TVKSNRSSNMTATTKFVSTTSQNTQLVRPP STTSQNTQLVRPPIRSHHSNTRDTVKQGIS K F V I R S 0 2 1 0 0 2 0 0 0 1 1 0 0 1 2 2 3 0 0 2 0 0 17 1 1943.0589 B2RMQ4;Q8WWK9 B2RMQ4 241 257 CKAP2 Cytoskeleton-associated protein 2 yes no 3 2.2267E-05 78.069 2 2 0.97032 0.96127 21.733 4 Median 0.71683 0.80283 4.2611 2 0 Median 1.3303 1.162 5.6132 2 0 Median 151960000 83514000 68447000 115540000 68171000 47371000 36419000 15343000 21076000 4589 895 4711 12051;12052;12053;12054 18820;18821;18822;18823;18824;18825;18826;18827 18822 8 FVTDLLLHFIK RTFNEPGSPIVKSAKFVTDLLLHFIKDQTC KSAKFVTDLLLHFIKDQTCYNIIPLYNSMK K F V I K D 0 0 0 1 0 0 0 0 1 1 3 1 0 2 0 0 1 0 0 1 0 0 11 0 1344.7806 Q8WWQ0;Q9NWP3 Q8WWQ0 1251 1261 PHIP PH-interacting protein yes no 2;3 0.0009531 69.954 9 0.76547 0.7987 4.085 3 Median 0.76547 0.7987 4.085 3 0 Median NaN NaN NaN 0 0 Median 50336000 32384000 17951000 50336000 32384000 17951000 0 0 0 4590 1942 4712 12055;12056;12057;12058;12059;12060;12061;12062;12063 18828;18829;18830;18831;18832;18833;18834;18835;18836;18837;18838 18833 11 FVTDSNAVVQLK EKSPEWSKFLGLIKKFVTDSNAVVQLKGLE IKKFVTDSNAVVQLKGLEAALVYVENAHVA K F V L K G 1 0 1 1 0 1 0 0 0 0 1 1 0 1 0 1 1 0 0 3 0 0 12 0 1319.7085 Q14008;E9PQH5;Q8NAH3 Q14008 56 67 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.037281 44.882 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4992500 4992500 0 4992500 4992500 0 0 0 0 4591 1725 4713 12064 18839 18839 1 FVTSNTQELGK AQKMGRKDPEQEVEKFVTSNTQELGKDKWL EVEKFVTSNTQELGKDKWLCPLSGKKFKGP K F V G K D 0 0 1 0 0 1 1 1 0 0 1 1 0 1 0 1 2 0 0 1 0 0 11 0 1222.6194 Q9BXP5;H7C3A1;Q7Z4Y3 Q9BXP5 700 710 SRRT Serrate RNA effector molecule homolog yes no 2 2.7847E-08 120.99 2 1.4553 1.498 29.257 2 Median 1.4553 1.498 29.257 2 0 Median NaN NaN NaN 0 0 Median 61081000 22544000 38537000 61081000 22544000 38537000 0 0 0 4592 2013 4714 12065;12066 18840;18841;18842;18843 18842 4 FVTSTSDHFVEGQTVAAK SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV STSDHFVEGQTVAAKVTNVDEEKQRMLLSL K F V A K V 2 0 0 1 0 1 1 1 1 0 0 1 0 2 0 2 3 0 0 3 0 0 18 0 1922.9374 Q14690;B4DH82 Q14690 765 782 PDCD11 Protein RRP5 homolog yes no 2;3 8.5683E-23 130.39 4 3 1.0257 1.1476 3.8496 3 Plateau 1.0185 1.1392 1.0481 2 0 Median 1.3439 1.067 NaN 1 0 Median 210370000 89224000 121140000 183320000 80640000 102680000 27043000 8583900 18460000 4593 1741 4715 12067;12068;12069;12070;12071;12072;12073 18844;18845;18846;18847;18848;18849;18850;18851;18852;18853;18854;18855;18856 18850 13 FVVDLSDQVAPTDIEEGMR SEDPKYIINVKQFAKFVVDLSDQVAPTDIE LSDQVAPTDIEEGMRVGVDRNKYQIHIPLP K F V M R V 1 1 0 3 0 1 2 1 0 1 1 0 1 1 1 1 1 0 0 3 0 0 19 0 2120.0096 A0A140VK70;P35998;Q75L23;B7Z571 A0A140VK70 121 139 PSMC2 26S protease regulatory subunit 7 yes no 2 1.4213E-13 100.22 2 2.3361 2.342 NaN 1 Median 2.3361 2.342 NaN 1 0 Median NaN NaN NaN 0 0 Median 30937000 4373000 26564000 30937000 4373000 26564000 0 0 0 4594 620 4716 12074;12075 18857;18858 18858 478 2 FVVLETGGEAGITR EPQLCEVLQVAGPDRFVVLETGGEAGITRS RFVVLETGGEAGITRSVVATTRARVCRRKY R F V T R S 1 1 0 0 0 0 2 3 0 1 1 0 0 1 0 0 2 0 0 2 0 0 14 0 1447.7671 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 49 62 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 9.4858E-05 101.95 3 2 1.5464 1.5112 9.8096 2 Median 1.2495 1.4099 NaN 1 0 Median 1.9138 1.6197 NaN 1 0 Median 80266000 36075000 44191000 75304000 34323000 40981000 4961900 1752200 3209700 4595 1873 4717 12076;12077;12078;12079;12080 18859;18860;18861;18862;18863;18864;18865;18866 18862 8 FVVQNVSAQK SDPQGVPYPEAKIGRFVVQNVSAQKDGEKS AKIGRFVVQNVSAQKDGEKSRVKVKVRVNT R F V Q K D 1 0 1 0 0 2 0 0 0 0 0 1 0 1 0 1 0 0 0 3 0 0 10 0 1118.6084 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 462 471 HSPH1 Heat shock protein 105 kDa yes no 2 0.0001382 93.178 2 2 1.6584 1.6812 17.525 3 Plateau 1.6584 1.6812 NaN 1 0 Median 1.4629 1.2435 2.8063 2 0 Median 53853000 11228000 42626000 50516000 9908800 40608000 3336900 1318900 2018000 4596 390 4718 12081;12082;12083;12084 18867;18868;18869;18870;18871 18867 5 FVVTGSK HAHTASLSAVAVNSRFVVTGSKDETIHIYD SAVAVNSRFVVTGSKDETIHIYDMKKKIEH R F V S K D 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 1 0 0 2 0 0 7 0 736.41194 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 54 60 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 0.02738 73.616 1 0.95283 1.0709 NaN 1 Median 0.95283 1.0709 NaN 1 0 Median NaN NaN NaN 0 0 Median 69935000 34488000 35447000 69935000 34488000 35447000 0 0 0 4597 580 4719 12085 18872 18872 1 FWDFELVK DQRGFVTGGADKSVKFWDFELVKDENSTQK GADKSVKFWDFELVKDENSTQKRLSVKQTR K F W V K D 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 0 0 1 0 1 0 0 8 0 1082.5437 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 522 529 WDR3 WD repeat-containing protein 3 yes no 2 0.0023905 100.19 2 0.80988 0.82971 4.007 2 Median 0.80988 0.82971 4.007 2 0 Median NaN NaN NaN 0 0 Median 45627000 25221000 20407000 45627000 25221000 20407000 0 0 0 4598 1827 4720 12086;12087 18873;18874;18875 18874 3 FWESPETVSQLDSVR GLAVYRRKDGGPDTKFWESPETVSQLDSVR FWESPETVSQLDSVRVWLGKHYKKYVHADA K F W V R V 0 1 0 1 0 1 2 0 0 0 1 0 0 1 1 3 1 1 0 2 0 0 15 0 1778.8475 Q58EY4;Q92922;Q05CR1;Q05BW5;F8WE13 Q58EY4 42 56 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 1.6387E-05 88.187 1 0.71392 0.77337 NaN 1 Median 0.71392 0.77337 NaN 1 0 Median NaN NaN NaN 0 0 Median 27486000 16210000 11276000 27486000 16210000 11276000 0 0 0 4599 1798 4721 12088 18876 18876 1 FWETLDR LSYHKRHLDRPVFLRFWETLDRYMVKHKSH LDRPVFLRFWETLDRYMVKHKSHLRF____ R F W D R Y 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 7 0 965.46068 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 514 520 CDC73 Parafibromin yes no 2 0.02693 74.335 2 1.4607 1.4609 14.678 2 Median 1.4607 1.4609 14.678 2 0 Median NaN NaN NaN 0 0 Median 22313000 7458400 14855000 22313000 7458400 14855000 0 0 0 4600 1851 4722 12089;12090 18877;18878;18879 18878 3 FWEVISDEHGIDPTGSYHGDSDLQLER VHIQAGQCGNQIGAKFWEVISDEHGIDPTG PTGSYHGDSDLQLERINVYYNEAAGNKYVP K F W E R I 0 1 0 4 0 1 3 3 2 2 2 0 0 1 1 3 1 1 1 1 0 0 27 0 3101.4003 Q13885;B2R6L0;Q9BVA1 Q13885 20 46 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain yes no 4 0.0038885 24.276 1 1.2821 1.4506 NaN 1 Median 1.2821 1.4506 NaN 1 0 Median NaN NaN NaN 0 0 Median 47696000 19732000 27964000 47696000 19732000 27964000 0 0 0 4601 1723 4723 12091 18880 18880 1 FWEVISDEHGIDPTGTYHGDSDLQLDR ______________________________ PTGTYHGDSDLQLDRISVYYNEATGGKYVP M F W D R I 0 1 0 5 0 1 2 3 2 2 2 0 0 1 1 2 2 1 1 1 0 0 27 0 3101.4003 Q5JP53;Q5SU16;P07437;B4DY90;Q6LC01;B4DMU8;B4DMJ5 Q5JP53 2 28 TUBB Tubulin beta chain yes no 4 5.3279E-16 73.341 1 2 1.2821 1.4506 26.672 3 Plateau 1.2821 1.4506 NaN 1 0 Median 1.1067 0.92222 7.4253 2 0 Median 84284000 36731000 47552000 47696000 19732000 27964000 36587000 16999000 19588000 4602 1452 4724 12092;12093;12094 18881;18882;18883 18881 3 FWTEVYPGAK HNKQLKKTKKRLKHRFWTEVYPGAKLFYLS RLKHRFWTEVYPGAKLFYLSGMVHGEYQNQ R F W A K L 1 0 0 0 0 0 1 1 0 0 0 1 0 1 1 0 1 1 1 1 0 0 10 0 1196.5866 Q14692 Q14692 206 215 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.010129 53.775 1 1 0.89199 0.91085 NaN 1 Median 0.89199 0.91085 NaN 1 0 Median NaN NaN NaN 0 0 Median 28283000 11230000 17054000 25835000 11230000 14606000 2448200 0 2448200 4603 1742 4725 12095;12096 18884;18885 18884 2 FWYFVSQLK RMRIFAPNHVVAKSRFWYFVSQLKKMKKSS VVAKSRFWYFVSQLKKMKKSSGEIVYCGQV R F W L K K 0 0 0 0 0 1 0 0 0 0 1 1 0 2 0 1 0 1 1 1 0 0 9 0 1216.6281 M0R117;B4DM74;Q02543;M0R3D6;M0R1A7;B4DM94;B4DUV3;B2R4C0;Q53HD3;Q32XH3 M0R117 44 52 RPL18A 60S ribosomal protein L18a yes no 2 0.013094 71.223 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20877000 10014000 10863000 20877000 10014000 10863000 0 0 0 4604 1003 4726 12097;12098 18886;18887 18887 2 FYALDPSFPR VFIPEDDPLFPPIEKFYALDPSFPRMNLLT PPIEKFYALDPSFPRMNLLTRTTEGKKRQL K F Y P R M 1 1 0 1 0 0 0 0 0 0 1 0 0 2 2 1 0 0 1 0 0 0 10 0 1211.5975 Q08J23 Q08J23 536 545 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.0048352 60.973 1 0.91153 0.7784 NaN 1 Median NaN NaN NaN 0 0 Median 0.91153 0.7784 NaN 1 0 Median 4525800 1913600 2612300 0 0 0 4525800 1913600 2612300 4605 1694 4727 12099 18888 18888 1 FYALSASFEPFSNK DEEKDKGLQTSQDARFYALSASFEPFSNKG RFYALSASFEPFSNKGQTLVVQFTVKHEQN R F Y N K G 2 0 1 0 0 0 1 0 0 0 1 1 0 3 1 3 0 0 1 0 0 0 14 0 1606.7668 B4DHR1;Q53G71;V9HW88;P27797 B4DHR1 58 71 HEL-S-99n;CALR Calreticulin yes no 2 0.0090957 52.693 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2433600 2433600 0 0 0 0 2433600 2433600 0 4606 978 4728 12100 18889 18889 1 FYDDAIVSQK PRDIDAFWLQRQLSRFYDDAIVSQKKADEV RQLSRFYDDAIVSQKKADEVLEILKTASDD R F Y Q K K 1 0 0 2 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 1 0 0 10 0 1184.5714 O75643;A4FU77 O75643 275 284 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 6.0391E-08 113.74 2 0.84123 0.92364 1.262 2 Median 0.84123 0.92364 1.262 2 0 Median NaN NaN NaN 0 0 Median 113380000 58788000 54587000 113380000 58788000 54587000 0 0 0 4607 1411 4729 12101;12102 18890;18891;18892 18890 3 FYEAFSK ELFSELAEDKENYKKFYEAFSKNLKLGIHE EDKENYKKFYEAFSKNLKLGIHEDSTNRRR K F Y S K N 1 0 0 0 0 0 1 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 7 0 890.41742 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF4 B4DMA2 391 397 HSP90AB1;HSP90Bf Heat shock protein HSP 90-beta yes no 2 0.025144 89.369 1 2.3556 2.7506 NaN 1 Median 2.3556 2.7506 NaN 1 0 Median NaN NaN NaN 0 0 Median 275170000 87111000 188060000 275170000 87111000 188060000 0 0 0 4608 379 4730 12103 18893;18894 18893 2 FYEDNGQLDDAR KATGKPHTLWVAFAKFYEDNGQLDDARVIL FAKFYEDNGQLDDARVILEKATKVNFKQVD K F Y A R V 1 1 1 3 0 1 1 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 12 0 1441.611 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 255 266 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 0.00019323 85.355 2 1.774 1.8042 32.666 2 Median 1.774 1.8042 32.666 2 0 Median NaN NaN NaN 0 0 Median 13940000 5718600 8221900 13940000 5718600 8221900 0 0 0 4609 1838 4731 12104;12105 18895;18896 18896 2 FYEEVHDLER ALKNLQVKCAQIEAKFYEEVHDLERKYAVL QIEAKFYEEVHDLERKYAVLYQPLFDKRFE K F Y E R K 0 1 0 1 0 0 3 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 10 0 1335.6095 F8VY35;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8W020;F8W118;F8VXI6;F8VUX1;F8VV59;A0A024RBE6;F8W0J6;B7Z2V4;H0YH88;H0YHC3;F8W543;B7Z9C2;F8VRJ2;B7Z5H0;F8VVB5;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;E9PKT8;C9J6D1;A8MXH2;C9JZI7;A0A024RCC9;B7ZAK9;B7ZB83;B7ZAC7;B4DS05;Q99733 F8VY35 95 104 NAP1L1;NAP1L4 Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4 no no 2;3 1.4432E-06 111.65 4 4 1.3532 1.1691 3.9952 7 Median 1.0265 1.1745 4.9276 3 0 Median 1.4241 1.1637 2.7103 4 0 Median 599500000 278160000 321340000 541870000 254610000 287260000 57630000 23546000 34084000 4610 332;359 4732 12106;12107;12108;12109;12110;12111;12112;12113 18897;18898;18899;18900;18901;18902;18903;18904 18897 8 FYEQMNGPVAGASR KIWFDKFKYDDAERRFYEQMNGPVAGASRQ RFYEQMNGPVAGASRQENGASVILRDIARA R F Y S R Q 2 1 1 0 0 1 1 2 0 0 0 0 1 1 1 1 0 0 1 1 0 0 14 0 1525.6984 D3DWK1;B2RAR6;E9PRY8;P29692;E9PK01;Q9BW34;A0A087X1X7;Q71RH4;Q9H7G6;E9PQ49;E9PI39;E9PQZ1;E9PMW7;E9PIZ1;E9PPR1;E9PL12;E9PL71;H0YCK7;E9PN91;E9PKK3;E9PK72;E9PK06 D3DWK1 391 404 EEF1D Elongation factor 1-delta yes no 2 0.00019949 77.74 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3691400 0 3691400 3691400 0 3691400 0 0 0 4611 875 4733 12114 18905 18905 681 1 FYFENLLSK PEALGNLVEGMDFHKFYFENLLSKNSKPIH GMDFHKFYFENLLSKNSKPIHTTILNPHVH K F Y S K N 0 0 1 0 0 0 1 0 0 0 2 1 0 2 0 1 0 0 1 0 0 0 9 0 1159.5914 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;H0Y6G2;Q8WU40;Q13280 Q5SWX3 435 443 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 0.0033771 71.379 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4384700 0 4384700 4384700 0 4384700 0 0 0 4612 475 4734 12115;12116;12117 18906;18907;18908 18906 3 FYFLEAYNAK LPECVQVYSMGGPNRFYFLEAYNAKSKSFE GGPNRFYFLEAYNAKSKSFEDPPNHARSPG R F Y A K S 2 0 1 0 0 0 1 0 0 0 1 1 0 2 0 0 0 0 2 0 0 0 10 0 1264.6128 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0 A0A024R7E3 1145 1154 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.00076493 81.594 3 0.63159 0.649 7.9283 2 Median 0.63159 0.649 7.9283 2 0 Median NaN NaN NaN 0 0 Median 16650000 10517000 6133200 16650000 10517000 6133200 0 0 0 4613 222 4735 12118;12119;12120 18909;18910;18911;18912;18913 18912 5 FYGELALK SRLMDEFKIGELFSKFYGELALKKKIPDTV IGELFSKFYGELALKKKIPDTVLEKVYELL K F Y L K K 1 0 0 0 0 0 1 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 8 0 939.50657 P78527;B4DL41;F5GX40 P78527 156 163 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.024726 55.676 1 0.68358 0.70827 NaN 1 Median 0.68358 0.70827 NaN 1 0 Median NaN NaN NaN 0 0 Median 33266000 19261000 14005000 33266000 19261000 14005000 0 0 0 4614 1665 4736 12121 18914 18914 1 FYGPEGPYGVFAGR MAINGKVFDVTKGRKFYGPEGPYGVFAGRD KFYGPEGPYGVFAGRDASRGLATFCLDKEA K F Y G R D 1 1 0 0 0 0 1 4 0 0 0 0 0 2 2 0 0 0 2 1 0 0 14 0 1515.7147 Q6IB11;O00264 Q6IB11 106 119 PGRMC1 Membrane-associated progesterone receptor component 1 yes no 2 0.00021928 66.595 2 1.3223 1.3854 NaN 1 Median 1.3223 1.3854 NaN 1 0 Median NaN NaN NaN 0 0 Median 18243000 4672100 13571000 18243000 4672100 13571000 0 0 0 4615 1361 4737 12122;12123 18915;18916;18917 18915 3 FYHEACVK SKTDVKRCVVTQCGKFYHEACVKKYPLTVF VVTQCGKFYHEACVKKYPLTVFESRGFRCP K F Y V K K 1 0 0 0 1 0 1 0 1 0 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1052.475 O96028 O96028 738 745 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.0052682 85.212 2 1 1.662 1.3502 NaN 1 Median NaN NaN NaN 0 0 Median 1.662 1.3502 NaN 1 0 Median 11798000 9893800 1904100 8893000 8893000 0 2905000 1000900 1904100 4616 1435 4738 12124;12125;12126 18918;18919;18920 18918 3 FYHLAK ______________________________ KVGKSRRDKFYHLAKETGYRSRSAFKLIQL K F Y A K E 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 6 0 777.41736 Q8IY81;J3KS36;J3QSE2;J3QRS5;J3QR05;J3KS74 Q8IY81 15 20 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.050279 74.417 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4617 1898 4739 12127 18921 18921 1 FYLDTVSALNFAAR SAHSILIANIAPERRFYLDTVSALNFAARS RFYLDTVSALNFAARSKEVINRPFTNESLQ R F Y A R S 3 1 1 1 0 0 0 0 0 0 2 0 0 2 0 1 1 0 1 1 0 0 14 0 1586.8093 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 351 364 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 5.5936E-10 157.78 2 2 1.1139 1.0174 18.686 4 Median 0.85348 0.88655 2.6618 2 0 Median 1.4793 1.2119 7.937 2 0 Median 64286000 30340000 33946000 42611000 21366000 21245000 21675000 8974200 12701000 4618 1745 4740 12128;12129;12130;12131 18922;18923;18924;18925;18926;18927;18928;18929;18930 18929 9 FYLGGPTSIR MLVPIGDKPSSIADRFYLGGPTSIRGFSMH SIADRFYLGGPTSIRGFSMHSIGPQSEGDY R F Y I R G 0 1 0 0 0 0 0 2 0 1 1 0 0 1 1 1 1 0 1 0 0 0 10 0 1109.5869 Q9Y512 Q9Y512 337 346 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.0067484 66.692 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13667000 13667000 0 13667000 13667000 0 0 0 0 4619 2147 4741 12132;12133 18931;18932 18931 2 FYNELTEILVR DNFVELVANLKEGTKFYNELTEILVRFQNK EGTKFYNELTEILVRFQNKCSDIVFARKTE K F Y V R F 0 1 1 0 0 0 2 0 0 1 2 0 0 1 0 0 1 0 1 1 0 0 11 0 1395.7398 B7Z5C1;B4DHD2;Q4W4Y1;Q8WUM4 B7Z5C1 457 467 DRIP4;PDCD6IP Programmed cell death 6-interacting protein yes no 2 0.043067 44.309 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4620 974 4742 12134;12135 18933;18934 18933 2 FYNLVLLPR TRIFASNLKERMAQRFYNLVLLPRVRDDVA ERMAQRFYNLVLLPRVRDDVAEYKRLNFHL R F Y P R V 0 1 1 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 1 1 0 0 9 0 1133.6597 Q13895;H7BY94 Q13895 249 257 BYSL Bystin yes no 2 2.0477E-06 135.84 3 2 1.0805 1.2432 20.217 4 Linear 1.1266 1.1968 1.1101 2 0 Median 1.0134 0.85121 7.9878 2 0 Median 74036000 35366000 38670000 57185000 27408000 29777000 16852000 7958900 8892800 4621 1724 4743 12136;12137;12138;12139;12140 18935;18936;18937;18938;18939;18940;18941;18942;18943 18939 9 FYNNVQGLVPK HGFIIRVKDYGCIVKFYNNVQGLVPKHELS CIVKFYNNVQGLVPKHELSTEYIPDPERVF K F Y P K H 0 0 2 0 0 1 0 1 0 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1277.6768 Q14690;B4DH82;B4DES7 Q14690 561 571 PDCD11 Protein RRP5 homolog yes no 2 8.0434E-10 125.31 2 2 1.1942 1.2296 6.5916 4 Linear 1.0845 1.2127 1.4222 2 0 Median 1.3502 1.0828 0.013335 2 0 Median 147160000 69851000 77314000 123490000 60447000 63044000 23673000 9404000 14269000 4622 1741 4744 12141;12142;12143;12144 18944;18945;18946;18947;18948;18949 18945 6 FYPAEWQDFLDSLQK DTPKQIRSKINVYKRFYPAEWQDFLDSLQK FYPAEWQDFLDSLQKRKMEVE_________ R F Y Q K R 1 0 0 2 0 2 1 0 0 0 2 1 0 2 1 1 0 1 1 0 0 0 15 0 1885.8887 Q9Y3C1 Q9Y3C1 158 172 NOP16 Nucleolar protein 16 yes yes 2 4.5278E-07 103.43 2 0.75211 0.76593 2.0196 2 Median 0.75211 0.76593 2.0196 2 0 Median NaN NaN NaN 0 0 Median 44298000 22832000 21466000 44298000 22832000 21466000 0 0 0 4623 2135 4745 12145;12146 18950;18951;18952;18953 18951 4 FYPLEIDYGQDEEAVK GNAWHSKNFTKYPKKFYPLEIDYGQDEEAV YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP K F Y V K K 1 0 0 2 0 1 3 1 0 1 1 1 0 1 1 0 0 0 2 1 0 0 16 0 1914.8887 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 638 653 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 7.0649E-25 180.2 2 2 0.90782 0.88258 13.749 4 Median 0.68989 0.77774 2.6457 2 0 Median 1.1728 0.98538 0.34431 2 0 Median 349520000 196410000 153100000 245570000 149490000 96083000 103950000 46926000 57021000 4624 139 4746 12147;12148;12149;12150 18954;18955;18956;18957;18958;18959 18955 6 FYPLEIDYGQDEEAVKK GNAWHSKNFTKYPKKFYPLEIDYGQDEEAV PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV K F Y K K L 1 0 0 2 0 1 3 1 0 1 1 2 0 1 1 0 0 0 2 1 0 0 17 1 2042.9837 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 638 654 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 0.00052722 43.297 2 2 0.95275 0.94395 4.2493 4 Median 0.77389 0.90528 4.2477 2 0 Median 1.1301 0.9608 0.83643 2 0 Median 146130000 74301000 71825000 113640000 59309000 54327000 32489000 14991000 17498000 4625 139 4747 12151;12152;12153;12154 18960;18961;18962;18963;18964;18965 18960 6 FYQEPNGETPSSLYR CEPQTLCHILGFKFKFYQEPNGETPSSLYR FYQEPNGETPSSLYRVAAVLLQFNLIDLDD K F Y Y R V 0 1 1 0 0 1 2 1 0 0 1 0 0 1 2 2 1 0 2 0 0 0 15 0 1786.8162 Q8NI27;A0A0C4DG98;B4DKZ6 Q8NI27 254 268 THOC2 THO complex subunit 2 yes no 2 0.0053444 52.928 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4626 1929 4748 12155 18966 18966 1 FYQGFLFSEKPEK NCAISVICCVFNELKFYQGFLFSEKPEKNL LKFYQGFLFSEKPEKNLLIFENLIDLKRRY K F Y E K N 0 0 0 0 0 1 2 1 0 0 1 2 0 3 1 1 0 0 1 0 0 0 13 1 1618.8031 P78527 P78527 1961 1973 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 7.3836E-05 94.616 4 4 0.32462 0.27585 42.636 6 Median 0.50895 0.59815 14.621 2 0 Median 0.31522 0.26596 5.9648 4 0 Median 117050000 83001000 34052000 81130000 56022000 25108000 35924000 26979000 8944500 4627 1665 4749 12156;12157;12158;12159;12160;12161;12162;12163 18967;18968;18969;18970;18971;18972;18973;18974;18975 18971 8 FYQVPVPLPDRR CEPMIGLVPILKGGRFYQVPVPLPDRRRRF GGRFYQVPVPLPDRRRRFLAMKWMITECRD R F Y R R R 0 2 0 1 0 1 0 0 0 0 1 0 0 1 3 0 0 0 1 2 0 0 12 1 1485.8092 A0A024R8L0;J3QLS3;Q9Y2R9;J3KSI8;J3QQS1 A0A024R8L0 167 178 MRPS7 28S ribosomal protein S7, mitochondrial yes no 3 0.010119 44.612 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9543800 3852400 5691400 9543800 3852400 5691400 0 0 0 4628 250 4750 12164;12165;12166;12167 18976;18977;18978;18979 18979 4 FYSFLVLK LELCRNTNRKQAAAKFYSFLVLKKQQAIEL RKQAAAKFYSFLVLKKQQAIELTQEEPYSD K F Y L K K 0 0 0 0 0 0 0 0 0 0 2 1 0 2 0 1 0 0 1 1 0 0 8 0 1015.5743 A0A024R9J0;O60216;E5RFZ5;B3KUT8;E5RG18;E5RI01;F6KSS9;Q9H4I0 A0A024R9J0 597 604 RAD21;RAD21L;RAD21L1 Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1 yes no 2 0.024045 56.122 1 0.68746 0.69244 NaN 1 Median 0.68746 0.69244 NaN 1 0 Median NaN NaN NaN 0 0 Median 7229000 4259500 2969500 7229000 4259500 2969500 0 0 0 4629 280 4751 12168 18980 18980 1 FYSLPQSPQQFK GGAKEFLVPSREPGKFYSLPQSPQQFKQLL PGKFYSLPQSPQQFKQLLMVGGLDRYFQVA K F Y F K Q 0 0 0 0 0 3 0 0 0 0 1 1 0 2 2 2 0 0 1 0 0 0 12 0 1468.7351 A8K4A8;A0A024R8Z9;Q6PI48;Q9H9J7 A8K4A8 236 247 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.025904 57.598 1 1.8618 1.8962 NaN 1 Median 1.8618 1.8962 NaN 1 0 Median NaN NaN NaN 0 0 Median 9216600 3071800 6144800 9216600 3071800 6144800 0 0 0 4630 266 4752 12169 18981 18981 0 FYTFICSVCSSGPEYLK ACVQCLQKPMLFGDRFYTFICSVCSSGPEY TFICSVCSSGPEYLKRLPLQWVDIAHLCLY R F Y L K R 0 0 0 0 2 0 1 1 0 1 1 1 0 2 1 3 1 0 2 1 0 0 17 0 2056.9274 Q9Y483;Q96G26;B4DZG1;B4DZ69;Q7Z534 Q9Y483 244 260 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.0017466 38.674 2 2.2321 1.771 24.357 2 Median NaN NaN NaN 0 0 Median 2.2321 1.771 24.357 2 0 Median 6346600 2281100 4065500 0 0 0 6346600 2281100 4065500 4631 2143 4753 12170;12171 18982;18983 18982 2 FYTLIPHDFGMK SQGSSDSQILDLSNRFYTLIPHDFGMKKPP SNRFYTLIPHDFGMKKPPLLNNADSVQAKV R F Y M K K 0 0 0 1 0 0 0 1 1 1 1 1 1 2 1 0 1 0 1 0 0 0 12 0 1467.7221 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 736 747 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 9.9806E-05 79.974 2 1 0.91986 0.96642 21.768 3 Plateau 0.91986 0.9534 10.834 2 0 Median 0.82105 0.66989 NaN 1 0 Median 66454000 35030000 31424000 60325000 31797000 28528000 6129500 3233400 2896200 4632 139 4754 12172;12173;12174 18984;18985;18986;18987;18988;18989 18986 118 6 FYVTTCVGK NDIPHVVRFSALKRRFYVTTCVGKSFHTYD SALKRRFYVTTCVGKSFHTYDVQKLSLVAV R F Y G K S 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 2 0 1 2 0 0 9 0 1073.5216 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 40 48 WDR36 WD repeat-containing protein 36 yes no 2 0.0028653 73.248 2 1 0.94788 1.0083 11.369 3 Median 0.8977 0.91631 13.534 2 0 Median 1.2876 1.0191 NaN 1 0 Median 50500000 24225000 26275000 45493000 21948000 23545000 5007500 2276800 2730700 4633 486 4755 12175;12176;12177 18990;18991;18992;18993;18994;18995 18990 6 GAAAAAAASGAAGGGGGGAGAGAPGGGR ______________________________ GGGGGAGAGAPGGGRLLLSTSLDAKDELEE K G A G R L 12 1 0 0 0 0 0 13 0 0 0 0 0 0 1 1 0 0 0 0 0 0 28 0 1951.9209 Q68E01 Q68E01 8 35 INTS3 Integrator complex subunit 3 yes yes 2 3.432E-66 153.79 2 1 0.95569 0.96205 26.976 3 Median 1.1133 1.126 22.258 2 0 Median 0.85269 0.77046 NaN 1 0 Median 20474000 9333700 11140000 18265000 8187900 10077000 2209000 1145800 1063200 4634 1840 4756 12178;12179;12180 18996;18997;18998;18999 18998 4 GAAEGSGGDGEGPPGEAGAEK GGSPCTKATPGSEPKGAAEGSGGDGEGPPG GGDGEGPPGEAGAEKSSSAVAPQRSRKKRC K G A E K S 4 0 0 1 0 0 4 8 0 0 0 1 0 0 2 1 0 0 0 0 0 0 21 0 1798.7606 Q14DW8;A0A087WWK9;P31277 Q14DW8 57 77 HOXD11 Homeobox protein Hox-D11 yes no 2 1.9162E-12 84.566 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2865500 2865500 0 2865500 2865500 0 0 0 0 4635 426 4757 12181 19000 19000 1 GAAGRPLELSDFR STPTGISASCRRPIKGAAGRPLELSDFRME IKGAAGRPLELSDFRMEESFSSKYVPKYVP K G A F R M 2 2 0 1 0 0 1 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 13 1 1387.7208 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;H0YJH7;Q9P1N8 A0A024RBE7 369 381 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 3 0.0002551 53.001 2 2 1.0272 1.035 13.379 4 Median 0.99975 1.1197 7.7771 2 0 Median 1.0632 0.93093 11.652 2 0 Median 137860000 67172000 70690000 105630000 50781000 54849000 32232000 16391000 15841000 4636 334 4758 12182;12183;12184;12185 19001;19002;19003;19004;19005;19006;19007;19008;19009 19004 9 GAALDVHESEPFSFAQGPLK DEKALAQALKEGRIRGAALDVHESEPFSFA VHESEPFSFAQGPLKDAPNLICTPHTAWYS R G A L K D 3 0 0 1 0 1 2 2 1 0 2 1 0 2 2 2 0 0 0 1 0 0 20 0 2099.0324 Q5SQP8;P56545 Q5SQP8 360 379 CTBP2 C-terminal-binding protein 2 yes no 3 0.0017901 27.443 1 2.5322 2.5993 NaN 1 Median 2.5322 2.5993 NaN 1 0 Median NaN NaN NaN 0 0 Median 17552000 5111100 12441000 17552000 5111100 12441000 0 0 0 4637 1620 4759 12186 19010 19010 1 GAAYGLAGLVK LMQQLLESDKYAERKGAAYGLAGLVKGLGI AERKGAAYGLAGLVKGLGILSLKQQEMMAA K G A V K G 3 0 0 0 0 0 0 3 0 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1018.5811 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1396 1406 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0082908 51.066 2 1.8069 1.8513 14.622 2 Median 1.8069 1.8513 14.622 2 0 Median NaN NaN NaN 0 0 Median 40034000 13837000 26196000 40034000 13837000 26196000 0 0 0 4638 1205 4760 12187;12188 19011;19012 19011 2 GACYGADHDLGR AGSPLTNQFYLAAPRGACYGADHDLGRLHP APRGACYGADHDLGRLHPCVMASLRAQSPI R G A G R L 2 1 0 2 1 0 0 3 1 0 1 0 0 0 0 0 0 0 1 0 0 0 12 0 1290.5411 H7C3J0;B4DKE1;Q6NUM9 H7C3J0 321 332 RETSAT All-trans-retinol 13,14-reductase yes no 2 0.02594 36.585 1 1.3628 1.3757 NaN 1 Median 1.3628 1.3757 NaN 1 0 Median NaN NaN NaN 0 0 Median 5756500 2934800 2821700 5756500 2934800 2821700 0 0 0 4639 988 4761 12189 19013 19013 1 GADFLVTEVENGGSLGSK IYVDDGLISLQVKQKGADFLVTEVENGGSL FLVTEVENGGSLGSKKGVNLPGAAVDLPAV K G A S K K 1 0 1 1 0 0 2 4 0 0 2 1 0 1 0 2 1 0 0 2 0 0 18 0 1778.8687 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34;Q8WUW7 V9HWB8 189 206 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 2.0359E-41 152 2 2 2.1754 1.7702 NaN 1 Median NaN NaN NaN 0 0 Median 2.1754 1.7702 NaN 1 0 Median 86179000 2056900 84122000 74734000 0 74734000 11445000 2056900 9388400 4640 1481 4762 12190;12191;12192;12193 19014;19015;19016;19017;19018 19015 5 GADTAPTLAPEALPSQGEVER GLLLEVEEPGTEEERGADTAPTLAPEALPS TLAPEALPSQGEVEREGESPAAGPPPQELV R G A E R E 4 1 0 1 0 1 3 2 0 0 2 0 0 0 3 1 2 0 0 1 0 0 21 0 2108.0386 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8 O15451 910 930 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 5.5814E-05 50.843 3 1.0144 0.996 NaN 1 Median 1.0144 0.996 NaN 1 0 Median NaN NaN NaN 0 0 Median 19491000 3610300 15881000 19491000 3610300 15881000 0 0 0 4641 746 4763 12194;12195;12196 19019;19020;19021;19022;19023;19024 19022 6 GADVFLEALAR TLYFFIAGRYEFSNKGADVFLEALARLNYL FSNKGADVFLEALARLNYLLRVNGSEQTVV K G A A R L 3 1 0 1 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1160.619 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6 P13807 338 348 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.00040176 81.338 2 2 0.48261 0.44664 13.801 4 Median 0.48597 0.49914 1.316 2 0 Median 0.48261 0.39407 3.306 2 0 Median 79915000 55186000 24730000 57753000 40706000 17047000 22162000 14479000 7682900 4642 1479 4764 12197;12198;12199;12200 19025;19026;19027;19028;19029;19030;19031 19029 7 GAEAANVTGPGGVPVQGSK GDGETVEFDVVEGEKGAEAANVTGPGGVPV ANVTGPGGVPVQGSKYAADRNHYRRYPRRR K G A S K Y 3 0 1 0 0 1 1 5 0 0 0 1 0 0 2 1 1 0 0 3 0 0 19 0 1694.8588 P67809;Q6PKI6;Q7KZ24;H0Y449 P67809 119 137 YBX1 Nuclease-sensitive element-binding protein 1 yes no 2 4.1011E-51 170.11 3 2 1.4452 1.37 65.179 4 Median 2.2098 2.4865 11.679 2 0 Median 1.0005 0.8091 1.8695 2 0 Median 156560000 45543000 111010000 139290000 36589000 102700000 17263000 8954600 8308700 4643 1657 4765 12201;12202;12203;12204;12205 19032;19033;19034;19035;19036;19037;19038 19034 7 GAEADQIIEYLK ______________________________ EQKGAEADQIIEYLKQQVSLLKEKAILQAT K G A L K Q 2 0 0 1 0 1 2 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 12 0 1348.6874 Q12904;D6R937;B4DNK3 Q12904 15 26 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 2 0.0069381 86.898 1 1.478 1.4834 NaN 1 Median 1.478 1.4834 NaN 1 0 Median NaN NaN NaN 0 0 Median 7508100 3177100 4331000 7508100 3177100 4331000 0 0 0 4644 1702 4766 12206 19039 19039 0 GAEAFGDSEEDGEDVFEVEK EGVGVVGEDNDAAARGAEAFGDSEEDGEDV GDSEEDGEDVFEVEKILDMKTEGGKVLYKV R G A E K I 2 0 0 3 0 0 6 3 0 0 0 1 0 2 0 1 0 0 0 2 0 0 20 0 2157.8862 Q99549;B3KS10 Q99549 44 63 MPHOSPH8 M-phase phosphoprotein 8 yes no 2 0.042684 21.237 1 1.2005 0.97382 NaN 1 Median NaN NaN NaN 0 0 Median 1.2005 0.97382 NaN 1 0 Median 2808900 1282100 1526800 0 0 0 2808900 1282100 1526800 4645 1994 4767 12207 19040 19040 1 GAEEWILTGSYDK PEQCMFHDDWISSIKGAEEWILTGSYDKTS IKGAEEWILTGSYDKTSRIWSLEGKSIMTI K G A D K T 1 0 0 1 0 0 2 2 0 1 1 1 0 0 0 1 1 1 1 0 0 0 13 0 1467.6882 Q53T99;Q9GZL7 Q53T99 109 121 WDR12 Ribosome biogenesis protein WDR12 yes no 2 0.00012317 90.653 2 1 0.56662 0.62247 11.542 3 Median 0.51259 0.56442 14.232 2 0 Median 0.75298 0.62247 NaN 1 0 Median 110050000 71920000 38128000 98220000 66133000 32087000 11828000 5786900 6040800 4646 1792 4768 12208;12209;12210 19041;19042;19043 19042 3 GAEGLGEEGGLHQDPLR VTDGHHASSRKRRRKGAEGLGEEGGLHQDP EGLGEEGGLHQDPLRHSCSPMGDGDPEAME K G A L R H 1 1 0 1 0 1 3 5 1 0 3 0 0 0 1 0 0 0 0 0 0 0 17 0 1733.8333 A0A024R8V6;Q9P275;A0A075B784;B3KMW2 A0A024R8V6 919 935 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2;3 4.8493E-06 94.09 6 3 1.644 1.377 27.993 5 Median 1.9698 2.076 18.155 2 0 Median 1.6126 1.3725 9.5704 3 0 Median 72124000 27781000 44343000 59698000 22616000 37082000 12426000 5165000 7261300 4647 260 4769 12211;12212;12213;12214;12215;12216;12217;12218;12219 19044;19045;19046;19047;19048;19049;19050;19051;19052;19053 19047 9 GAEHITTYTFNTHK NRHFIVPASRFKLLKGAEHITTYTFNTHKA KGAEHITTYTFNTHKAQHTFCKRCGVQSFY K G A H K A 1 0 1 0 0 0 1 1 2 1 0 1 0 1 0 0 4 0 1 0 0 0 14 0 1618.774 Q7Z7K6 Q7Z7K6 197 210 CENPV Centromere protein V yes yes 3 6.3692E-07 106.58 1 1.1975 1.3051 NaN 1 Median 1.1975 1.3051 NaN 1 0 Median NaN NaN NaN 0 0 Median 49696000 22907000 26789000 49696000 22907000 26789000 0 0 0 4648 1882 4770 12220 19054 19054 1 GAEQLAEGGR NSLQLHGLQLRIATRGAEQLAEGGRMVYST RIATRGAEQLAEGGRMVYSTCSLNPIEDEA R G A G R M 2 1 0 0 0 1 2 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 10 0 986.47812 Q08J23 Q08J23 306 315 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 4.5895E-06 109.29 1 1.3808 1.4215 NaN 1 Median 1.3808 1.4215 NaN 1 0 Median NaN NaN NaN 0 0 Median 24825000 10942000 13883000 24825000 10942000 13883000 0 0 0 4649 1694 4771 12221 19055;19056;19057 19056 3 GAETELVR TKEKRGPGRKARKQKGAETELVRFLPAVSD RKARKQKGAETELVRFLPAVSDENSKRLSS K G A V R F 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 873.4556 P46087;F5H5X6;F5GWB7;F5H709;F5H359;F5H8G6 P46087 23 30 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.0066199 86.472 2 2 1.1611 1.0839 9.5064 4 Median 1.0353 1.1773 5.5179 2 0 Median 1.2335 1.0122 3.5084 2 0 Median 157900000 73613000 84290000 136430000 64724000 71710000 21468000 8889100 12579000 4650 1570 4772 12222;12223;12224;12225 19058;19059;19060;19061 19058 4 GAFASLSELHCDK LDSFCEGLKQLDDLKGAFASLSELHCDKLH LKGAFASLSELHCDKLHVDPENFRLLGNVL K G A D K L 2 0 0 1 1 0 1 1 1 0 2 1 0 1 0 2 0 0 0 0 0 0 13 0 1433.6609 CON__Q3SX09 CON__Q3SX09 138 150 yes yes 2 4.2939E-22 143.24 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39635000 39635000 0 31068000 31068000 0 8567200 8567200 0 + 4651 1172 4773 12226;12227 19062;19063 19062 2 GAFGKPQGTVAR MLSCAGADRLQTGMRGAFGKPQGTVARVHI GMRGAFGKPQGTVARVHIGQVIMSIRTKLQ R G A A R V 2 1 0 0 0 1 0 3 0 0 0 1 0 1 1 0 1 0 0 1 0 0 12 1 1187.6411 F8W7C6;A0A087WV22;H7C123;H7C2C5;X1WI28;X5D2T3;P27635;Q96L21 X1WI28 117 128 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like no no 2;3 1.2974E-07 119.94 4 2 0.95401 1.0889 6.9558 6 Median 0.93382 1.1189 3.9885 4 0 Median 1.1429 1.0021 5.7994 2 0 Median 1286300000 648410000 637940000 1106800000 560420000 546390000 179530000 87986000 91548000 4652 1524;1266 4774 12228;12229;12230;12231;12232;12233 19064;19065;19066;19067;19068;19069;19070;19071;19072;19073;19074 19069 11 GAFIQLLR PTLAFHASLTNPFGKGAFIQLLRQFGKLHT LTNPFGKGAFIQLLRQFGKLHTDKKQISVG K G A L R Q 1 1 0 0 0 1 0 1 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 916.54944 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 292 299 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0059854 88.734 2 1 1.0761 1.0984 1.7191 3 Plateau 1.0521 1.0978 0.079477 2 0 Median 1.2379 1.0656 NaN 1 0 Median 62822000 30194000 32628000 55516000 27256000 28260000 7305800 2938300 4367600 4653 1721 4775 12234;12235;12236 19075;19076;19077;19078;19079 19078 5 GAGGALLTPK KNTHQSGRLEETAGKGAGGALLTPKTEPEE ETAGKGAGGALLTPKTEPEELAVSQGGAAP K G A P K T 2 0 0 0 0 0 0 3 0 0 2 1 0 0 1 0 1 0 0 0 0 0 10 0 883.51272 Q8N1G0;H0Y5I5 Q8N1G0 893 902 ZNF687 Zinc finger protein 687 yes no 2 0.0052298 60.436 2 0.8922 0.95525 5.3045 2 Median 0.8922 0.95525 5.3045 2 0 Median NaN NaN NaN 0 0 Median 70196000 37176000 33020000 70196000 37176000 33020000 0 0 0 4654 1905 4776 12237;12238 19080;19081;19082 19081 3 GAGIGGLGITVEGPSESK EAFTNKPNVFTVVTRGAGIGGLGITVEGPS IGGLGITVEGPSESKINCRDNKDGSCSAEY R G A S K I 1 0 0 0 0 0 2 6 0 2 1 1 0 0 1 2 1 0 0 1 0 0 18 0 1627.8417 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1355 1372 FLNB;DKFZp686A1668 Filamin-B yes no 2 6.3737E-05 53.869 2 2 1.5002 1.5069 10.828 3 Median 1.4544 1.4447 5.9673 2 0 Median 2.0504 1.717 NaN 1 0 Median 38068000 13844000 24225000 36217000 13261000 22955000 1851800 582400 1269400 4655 1402 4777 12239;12240;12241;12242 19083;19084;19085;19086;19087 19083 5 GAGLGFSTAPNK LQRDYDRAMSWKYSRGAGLGFSTAPNKIFY YSRGAGLGFSTAPNKIFYIDRNASKSVKLE R G A N K I 2 0 1 0 0 0 0 3 0 0 1 1 0 1 1 1 1 0 0 0 0 0 12 0 1118.572 Q1ED39;H3BNU8 Q1ED39 431 442 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 0.00058242 68.847 1 2 1.9703 1.5592 28.974 3 Median 0.96643 0.95015 NaN 1 0 Median 1.981 1.5692 0.90653 2 0 Median 29071000 10916000 18154000 20057000 7789600 12267000 9014200 3126800 5887300 4656 1775 4778 12243;12244;12245 19088;19089;19090 19088 3 GAGTGGLGLAVEGPSEAK SGTTNKPNKFTVETRGAGTGGLGLAVEGPS TGGLGLAVEGPSEAKMSCMDNKDGSCSVEY R G A A K M 3 0 0 0 0 0 2 6 0 0 2 1 0 0 1 1 1 0 0 1 0 0 18 0 1569.7999 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1382 1399 FLNA;FLJ00119 Filamin-A yes no 2 1.1662E-39 159.12 2 2 1.5871 1.7113 35.856 3 Median 1.5469 1.6923 1.5827 2 0 Median 3.9451 3.1482 NaN 1 0 Median 97964000 35295000 62669000 86402000 33599000 52802000 11562000 1695700 9866300 4657 1504 4779 12246;12247;12248;12249 19091;19092;19093;19094;19095;19096;19097 19094 7 GAIILSSLLQSCDLEVANK HVGMKNLKSWASVNRGAIILSSLLQSCDLE LSSLLQSCDLEVANKVKAALKSLIPTLEKT R G A N K V 2 0 1 1 1 1 1 1 0 2 4 1 0 0 0 3 0 0 0 1 0 0 19 0 2030.0718 Q15397;B2RDG4 Q15397 599 617 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 2.6523E-17 123.28 2 2 0.74307 0.69204 8.0022 4 Median 0.68982 0.69204 3.6053 2 0 Median 0.87023 0.71241 13.065 2 0 Median 80088000 42305000 37783000 23009000 12348000 10661000 57080000 29957000 27122000 4658 1761 4780 12250;12251;12252;12253 19098;19099;19100;19101;19102;19103;19104 19104 7 GALALEEK ERDELADEIANSSGKGALALEEKRRLEARI IANSSGKGALALEEKRRLEARIAQLEEELE K G A E K R 2 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 829.45453 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1717 1724 MYH9;FLJ00279 Myosin-9 yes no 2 0.013465 65.252 2 1.7805 2.0342 2.4429 2 Median 1.7805 2.0342 2.4429 2 0 Median NaN NaN NaN 0 0 Median 335160000 113940000 221220000 335160000 113940000 221220000 0 0 0 4659 81 4781 12254;12255 19105;19106;19107;19108 19107 4 GALINVPPPFLGLPR GQRHGLEAISIMDSRGALINVPPPFLGLPR GALINVPPPFLGLPRFEARKAVLVALKERG R G A P R F 1 1 1 0 0 0 0 2 0 1 3 0 0 1 4 0 0 0 0 1 0 0 15 0 1559.9188 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 619 633 VARS Valine--tRNA ligase yes no 2 9.8463E-06 93.111 2 0.91225 0.9192 2.6829 2 Median 0.91225 0.9192 2.6829 2 0 Median NaN NaN NaN 0 0 Median 30212000 14977000 15235000 30212000 14977000 15235000 0 0 0 4660 363 4782 12256;12257 19109;19110;19111;19112;19113 19109 5 GALQNIIPASTGAAK KTVDGPSGKLWRDGRGALQNIIPASTGAAK GALQNIIPASTGAAKAVGKVIPELNGKLTG R G A A K A 4 0 1 0 0 1 0 2 0 2 1 1 0 0 1 1 1 0 0 0 0 0 15 0 1410.7831 V9HVZ4;P04406;Q2TSD0;Q0QET7;E7EUT5;A4UCT1;Q5ZEY3 V9HVZ4 201 215 HEL-S-162eP;GAPDH;GAPD Glyceraldehyde-3-phosphate dehydrogenase yes no 2 1.3063E-05 90.689 2 2 2.4154 2.3844 38.054 4 Median 2.7991 3.2934 0.8382 2 0 Median 2.0618 1.7047 2.6244 2 0 Median 785200000 213080000 572120000 708500000 188090000 520410000 76696000 24988000 51707000 4661 1442 4783 12258;12259;12260;12261 19114;19115;19116;19117;19118;19119;19120;19121;19122 19117 9 GALTGGYYDTR TMDCITLEGDQVSHRGALTGGYYDTRKSRL VSHRGALTGGYYDTRKSRLELQKDVRKAEE R G A T R K 1 1 0 1 0 0 0 3 0 0 1 0 0 0 0 0 2 0 2 0 0 0 11 0 1172.5462 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 662 672 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.05694 33.744 1 1.2233 1.0738 NaN 1 Median NaN NaN NaN 0 0 Median 1.2233 1.0738 NaN 1 0 Median 2512900 1098100 1414800 0 0 0 2512900 1098100 1414800 4662 803 4784 12262 19123 19123 1 GALTVGITNTVGSSISR ETADTLMGLRYCKERGALTVGITNTVGSSI LTVGITNTVGSSISRETDCGVHINAGPEIG R G A S R E 1 1 1 0 0 0 0 3 0 2 1 0 0 0 0 3 3 0 0 2 0 0 17 0 1631.8842 Q06210 Q06210 458 474 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 3.2834E-09 107.53 2 2.641 2.7064 NaN 1 Median 2.641 2.7064 NaN 1 0 Median NaN NaN NaN 0 0 Median 26016000 7591700 18424000 26016000 7591700 18424000 0 0 0 4663 1688 4785 12263;12264 19124;19125;19126 19126 3 GANAVGYTNYPDNVVFK LRELIPNIPFQMLLRGANAVGYTNYPDNVV NAVGYTNYPDNVVFKFCEVAKENGMDVFRV R G A F K F 2 0 3 1 0 0 0 2 0 0 0 1 0 1 1 0 1 0 2 3 0 0 17 0 1827.8792 A0A024R5C5;P11498 A0A024R5C5 645 661 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 7.4837E-05 66.023 1 2.5316 2.5582 NaN 1 Median 2.5316 2.5582 NaN 1 0 Median NaN NaN NaN 0 0 Median 13177000 3623500 9553300 13177000 3623500 9553300 0 0 0 4664 176 4786 12265 19127 19127 1 GAPAAATAPAPTAHK FKLNRKKLEGGGERRGAPAAATAPAPTAHK GAPAAATAPAPTAHKAKKAAPGAAGSRRAD R G A H K A 7 0 0 0 0 0 0 1 1 0 0 1 0 0 3 0 2 0 0 0 0 0 15 0 1330.6993 Q92522 Q92522 129 143 H1FX Histone H1x yes yes 2;3 9.5407E-39 223.07 4 3 0.87512 1.0202 42.061 7 Median 0.91993 1.0603 5.0314 4 0 Median 0.62711 0.52501 8.8241 3 0 Plateau 1223500000 645590000 577950000 1116200000 581310000 534910000 107320000 64279000 43038000 4665 1946 4787 12266;12267;12268;12269;12270;12271;12272 19128;19129;19130;19131;19132;19133;19134;19135;19136;19137;19138;19139;19140 19129 13 GAPGQPGTILR ATGHGQQGVTQVVLKGAPGQPGTILRTVPM VVLKGAPGQPGTILRTVPMGGVRLVTPVTV K G A L R T 1 1 0 0 0 1 0 3 0 1 1 0 0 0 2 0 1 0 0 0 0 0 11 0 1065.5931 A6NEM2;P51610 A6NEM2 837 847 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.0018323 64.485 1 0.7839 0.81579 NaN 1 Median 0.7839 0.81579 NaN 1 0 Median NaN NaN NaN 0 0 Median 21079000 11089000 9989900 21079000 11089000 9989900 0 0 0 4666 680 4788 12273 19141 19141 1 GAPPSSNIEDFHGLLPK GPGPLQERSLFEKKRGAPPSSNIEDFHGLL PPSSNIEDFHGLLPKGYPHLCSICDLPVHS R G A P K G 1 0 1 1 0 0 1 2 1 1 2 1 0 1 3 2 0 0 0 0 0 0 17 0 1777.8999 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991;H0Y8T4 D6REM6 271 287 MATR3;DKFZp686K23100 Matrin-3 yes no 3 2.3337E-05 62.055 1 2 1.5469 1.731 42.186 3 Plateau 1.5469 1.7418 NaN 1 0 Median 1.0482 0.83888 0.87778 2 0 Median 79636000 30781000 48855000 57825000 21266000 36559000 21811000 9514600 12296000 4667 542 4789 12274;12275;12276 19142;19143;19144;19145;19146;19147;19148 19142 7 GAPVGGHILSYLLEK SSRFGKYMDVQFDFKGAPVGGHILSYLLEK GAPVGGHILSYLLEKSRVVHQNHGERNFHI K G A E K S 1 0 0 0 0 0 1 3 1 1 3 1 0 0 1 1 0 0 1 1 0 0 15 0 1552.8613 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;D3DTH7 F5H6E2 186 200 MYO1C Unconventional myosin-Ic no no 2;3 0.001196 40.801 3 1.2779 1.2808 41.448 3 Median 1.2779 1.2808 41.448 3 0 Median NaN NaN NaN 0 0 Median 80568000 32251000 48317000 80568000 32251000 48317000 0 0 0 4668 1088;1189 4790 12277;12278;12279 19149;19150;19151;19152 19149 4 GAPVNISSSDLTGR SGMERERKVSMRLHRGAPVNISSSDLTGRQ RGAPVNISSSDLTGRQDTSRMSTSQNSIPF R G A G R Q 1 1 1 1 0 0 0 2 0 1 1 0 0 0 1 3 1 0 0 1 0 0 14 0 1372.6947 B4DIJ9;Q59FJ7;B4E0G1;A0A024R8X3;H7BYT1;P48730;J3KRM8 B4DIJ9 265 278 CSNK1D Casein kinase I isoform delta yes no 2 0.011225 51.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3896200 3896200 0 3896200 3896200 0 0 0 0 4669 263 4791 12280 19153 19153 1 GAQAAIVVYDITNTDTFAR AGQERYHSLAPMYYRGAQAAIVVYDITNTD AIVVYDITNTDTFARAKNWVKELQRQASPN R G A A R A 4 1 1 2 0 1 0 1 0 2 0 0 0 1 0 0 3 0 1 2 0 0 19 0 2025.0167 A0A024R1U4;P51148;F8VVK3;K7ERI8;K7ERQ8;K7ENY4 A0A024R1U4 93 111 RAB5C Ras-related protein Rab-5C yes no 2 0.012892 38.189 1 1 0.90152 0.7807 NaN 1 Median NaN NaN NaN 0 0 Median 0.90152 0.7807 NaN 1 0 Median 4220000 856430 3363600 2262900 0 2262900 1957100 856430 1100700 4670 92 4792 12281;12282 19154;19155 19155 2 GAQVEEIWSLEPENFEK DPGVFTELIKGFGCRGAQVEEIWSLEPENF QVEEIWSLEPENFEKLKPVHGLIFLFKWQP R G A E K L 1 0 1 0 0 1 5 1 0 1 1 1 0 1 1 1 0 1 0 1 0 0 17 0 2003.9476 Q5LJA5;Q5LJA9;Q9Y5K5;Q5LJB0;B2RB07 Q5LJA5 29 45 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 2 0.00091686 44.511 2 1.044 0.83815 NaN 1 Median NaN NaN NaN 0 0 Median 1.044 0.83815 NaN 1 0 Median 3883000 1319800 2563200 0 0 0 3883000 1319800 2563200 4671 1811 4793 12283;12284 19156;19157 19157 2 GAQYQPILR SYNGEPQSWFQRQLRGAQYQPILRDHICKD FQRQLRGAQYQPILRDHICKDMSALVAARM R G A L R D 1 1 0 0 0 2 0 1 0 1 1 0 0 0 1 0 0 0 1 0 0 0 9 0 1044.5716 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0;K7ENW7 A0A024R7E3 1464 1472 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.00023109 105.39 2 0.63138 0.66625 8.4676 2 Median 0.63138 0.66625 8.4676 2 0 Median NaN NaN NaN 0 0 Median 63041000 36783000 26259000 63041000 36783000 26259000 0 0 0 4672 222 4794 12285;12286 19158;19159 19158 2 GASGPQVGNALGSLEPLR LQFRAVCARGRGGARGASGPQVGNALGSLE GPQVGNALGSLEPLRWMLRSPFDRNVPVNL R G A L R W 2 1 1 0 0 1 1 4 0 0 3 0 0 0 2 2 0 0 0 1 0 0 18 0 1721.906 Q9H9F9 Q9H9F9 74 91 ACTR5 Actin-related protein 5 yes yes 2 9.486E-06 80.371 1 2 1.0296 0.94767 29.942 2 Median 0.75162 0.76685 NaN 1 0 Median 1.4104 1.1711 NaN 1 0 Median 31181000 16208000 14973000 20690000 13877000 6813100 10491000 2331000 8159800 4673 2045 4795 12287;12288;12289 19160;19161;19162;19163 19160 4 GASGSFVVVQK KRELNRGVIKQVKGKGASGSFVVVQKSRKT VKGKGASGSFVVVQKSRKTPQKSRNRKNRS K G A Q K S 1 0 0 0 0 1 0 2 0 0 0 1 0 1 0 2 0 0 0 3 0 0 11 0 1077.5819 Q5SSJ5;X6RGJ2;Q5SWC8 Q5SSJ5 223 233 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 3.2364E-06 111.46 2 2 0.91766 0.90497 17.738 4 Median 0.89862 1.0592 1.9702 2 0 Median 0.92794 0.7796 0.80471 2 0 Median 915220000 456690000 458530000 811680000 402800000 408880000 103540000 53894000 49641000 4674 1817 4796 12290;12291;12292;12293 19164;19165;19166;19167;19168;19169;19170;19171 19165 8 GASGTFQLK QRAVERGQLEQITGKGASGTFQLKKSGEKP EQITGKGASGTFQLKKSGEKPLLGGSLMEY K G A L K K 1 0 0 0 0 1 0 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 9 0 907.47633 Q5SSJ5;B0QZK4 Q5SSJ5 321 329 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.00012949 109.01 2 2 0.8797 0.83989 9.4953 4 Median 0.79012 0.92306 5.046 2 0 Median 0.95252 0.78936 0.46777 2 0 Median 656130000 362120000 294000000 577310000 322510000 254800000 78821000 39615000 39206000 4675 1817 4797 12294;12295;12296;12297 19172;19173;19174;19175;19176;19177;19178;19179 19175 8 GATGATTTIYAVEADGDPNAGFEK FETIERFMDCRIGRKGATGATTTIYAVEAD YAVEADGDPNAGFEKNKEPGEIQYLIKWKG K G A E K N 5 0 1 2 0 0 2 4 0 1 0 1 0 1 1 0 4 0 1 1 0 0 24 0 2355.0866 O14646 O14646 286 309 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.0046509 35.473 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18043000 18043000 0 18043000 18043000 0 0 0 0 4676 1366 4798 12298 19180;19181 19181 2 GATGEPEVMEPALEGTGK ______________________________ GEPEVMEPALEGTGKEGKKASSRKRTLAEP R G A G K E 2 0 0 0 0 0 4 4 0 0 1 1 1 0 2 0 2 0 0 1 0 0 18 0 1771.8298 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 12 29 NOL6 Nucleolar protein 6 yes no 2 3.8333E-13 112.08 2 1.4661 1.6413 5.6207 2 Median 1.4661 1.6413 5.6207 2 0 Median NaN NaN NaN 0 0 Median 120820000 49142000 71682000 120820000 49142000 71682000 0 0 0 4677 2038 4799 12299;12300 19182;19183;19184;19185 19184 1877 4 GATQQILDEAER FSGVALGEACTIVLRGATQQILDEAERSLH VLRGATQQILDEAERSLHDALCVLAQTVKD R G A E R S 2 1 0 1 0 2 2 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 12 0 1329.6525 F8VQ14;F5GWF6;V9HW96;P78371;B7Z4R3;Q9H369 F8VQ14 377 388 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 2 1.1939E-28 152.54 2 2 1.8769 1.5771 5.7303 2 Median NaN NaN NaN 0 0 Median 1.8769 1.5771 5.7303 2 0 Median 62862000 3107900 59754000 53772000 0 53772000 9090500 3107900 5982600 4678 1255 4800 12301;12302;12303;12304 19186;19187;19188;19189 19187 4 GATVLPANTPGNVGSGK EQLAKQHNHLERAFRGATVLPANTPGNVGS TVLPANTPGNVGSGKDQCCSGKGDMSDEDD R G A G K D 2 0 2 0 0 0 0 4 0 0 1 1 0 0 2 1 2 0 0 2 0 0 17 0 1538.8053 P22059 P22059 324 340 OSBP Oxysterol-binding protein 1 yes yes 2 8.0927E-07 85.845 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3478100 0 3478100 3478100 0 3478100 0 0 0 4679 1505 4801 12305;12306;12307 19190;19191;19192 19192 3 GATYPSEIPK TVSEASYQSERVEEKGATYPSEIPKEDSTT RVEEKGATYPSEIPKEDSTTFAKREDRVTT K G A P K E 1 0 0 0 0 0 1 1 0 1 0 1 0 0 2 1 1 0 1 0 0 0 10 0 1061.5393 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424 A0A1P7ZIM8 449 458 LMO7 LIM domain only protein 7 yes no 2 0.033417 41.427 1 2.247 2.2525 NaN 1 Median 2.247 2.2525 NaN 1 0 Median NaN NaN NaN 0 0 Median 15827000 4744100 11083000 15827000 4744100 11083000 0 0 0 4680 640 4802 12308 19193 19193 1 GAVAIADAIR QVEVINFGDCLVRSKGAVAIADAIRGGLPK LVRSKGAVAIADAIRGGLPKLKELNLSFCE K G A I R G 4 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 10 0 955.54508 B4DY16;A0A024R1U0;P46060;B4E0U0;H0Y4Q3 B4DY16 225 234 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.0068167 66.621 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8039400 0 8039400 8039400 0 8039400 0 0 0 4681 90 4803 12309 19194;19195;19196;19197 19195 4 GAVDALAAALAHISGASSFEPR VDFFRPSAQRLIEEKGAVDALAAALAHISG AALAHISGASSFEPRSLITSDKGFVTMTLE K G A P R S 7 1 0 1 0 0 1 2 1 1 2 0 0 1 1 3 0 0 0 1 0 0 22 0 2110.0807 B4DW97;A0A087WVC1;Q9BQ39;B4DED6;K0J110;Q9NTA9 B4DW97 557 578 DDX50;mcdrh;DKFZp761E0323 ATP-dependent RNA helicase DDX50 yes no 3 0.051019 21.865 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1890800 1890800 0 1890800 1890800 0 0 0 0 4682 416 4804 12310 19198 19198 1 GAVDGGLSIPHSTK LARTTTGNKVFGALKGAVDGGLSIPHSTKR KGAVDGGLSIPHSTKRFPGYDSESKEFNAE K G A T K R 1 0 0 1 0 0 0 3 1 1 1 1 0 0 1 2 1 0 0 1 0 0 14 0 1337.6939 A2RUM7;P46777;Q59GX9;B3KTM6;Q5T7N0 A2RUM7 165 178 RPL5 60S ribosomal protein L5 yes no 2;3 1.4137E-22 150.33 6 2 0.94086 1.0794 20.136 7 Median 0.96855 1.1056 11.181 5 0 Median 0.93353 0.79842 0.20527 2 0 Median 3696900000 1876600000 1820300000 3529200000 1790100000 1739100000 167740000 86491000 81246000 4683 653 4805 12311;12312;12313;12314;12315;12316;12317;12318 19199;19200;19201;19202;19203;19204;19205;19206;19207;19208;19209;19210;19211 19200 13 GAVEAELDPVEYTLR ______________________________ GAVEAELDPVEYTLRKRLPSRLPRRPNDIY R G A L R K 2 1 0 1 0 0 3 1 0 0 2 0 0 0 1 0 1 0 1 2 0 0 15 0 1660.8308 C9JYM0;O75817 C9JYM0 9 23 POP7 Ribonuclease P protein subunit p20 yes no 2 0.0014864 65.395 2 0.91831 0.91334 NaN 1 Median 0.91831 0.91334 NaN 1 0 Median NaN NaN NaN 0 0 Median 8298000 4387000 3911100 8298000 4387000 3911100 0 0 0 4684 1144 4806 12319;12320 19212;19213 19213 2 GAVEALAAALAHISGATSVDQR ISHFKQSAEKLIEEKGAVEALAAALAHISG AALAHISGATSVDQRSLINSNVGFVTMILQ K G A Q R S 7 1 0 1 0 1 1 2 1 1 2 0 0 0 0 2 1 0 0 2 0 0 22 0 2107.1022 Q9NR30 Q9NR30 606 627 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 4.9347E-87 168.78 9 2 1.2335 1.0773 10.862 10 Linear 1.0767 1.1098 11.698 8 0 Median 1.1768 1.0254 0.82703 2 0 Median 863540000 404240000 459300000 318680000 154060000 164620000 544860000 250180000 294680000 4685 2065 4807 12321;12322;12323;12324;12325;12326;12327;12328;12329;12330;12331 19214;19215;19216;19217;19218;19219;19220;19221;19222;19223;19224;19225;19226;19227;19228;19229;19230;19231;19232;19233;19234;19235;19236;19237;19238;19239;19240 19237 27 GAVGALLVYDIAK AGQERYRAITSAYYRGAVGALLVYDIAKHL YRGAVGALLVYDIAKHLTYENVERWLKELR R G A A K H 3 0 0 1 0 0 0 2 0 1 2 1 0 0 0 0 0 0 1 2 0 0 13 0 1288.7391 H3BMH2;H3BSC1;A0A024R5Z8;B4DMN1;P62491;Q15907 H3BMH2 83 95 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B yes no 2 0.00030291 65.5 2 1.9273 1.9142 7.0807 2 Median 1.9273 1.9142 7.0807 2 0 Median NaN NaN NaN 0 0 Median 13911000 3789400 10122000 13911000 3789400 10122000 0 0 0 4686 194 4808 12332;12333 19241;19242;19243;19244 19242 4 GAVIVVSHDAR IESIDALGEAINEYKGAVIVVSHDARLITE NEYKGAVIVVSHDARLITETNCQLWVVEEQ K G A A R L 2 1 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 3 0 0 11 0 1122.6146 Q8NE71;Q2L6I2;B4DNU2;Q59F96;H0YGW7;A0A0G2JIC2 Q8NE71 790 800 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 4.6677E-13 148.52 2 2 0.71193 0.68734 32.708 4 Median 0.78702 0.88562 2.7321 2 0 Median 0.6184 0.50728 9.8466 2 0 Median 224380000 131500000 92877000 203440000 118530000 84909000 20940000 12972000 7968000 4687 1926 4809 12334;12335;12336;12337 19245;19246;19247;19248;19249;19250;19251;19252 19246 8 GAVVGIDLGTTNSCVAVMEGK FRLVSRRDYASEAIKGAVVGIDLGTTNSCV DLGTTNSCVAVMEGKQAKVLENAEGARTTP K G A G K Q 2 0 1 1 1 0 1 4 0 1 1 1 1 0 0 1 2 0 0 4 0 0 21 0 2077.0184 B7Z4V2;V9HW84;P38646;Q8N1C8 B7Z4V2 39 59 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.5585E-07 67.115 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4439900 0 4439900 4439900 0 4439900 0 0 0 4688 1092 4810 12338 19253 19253 835 1 GAVYSMVEFNGK YSDGKLQTVAEKEVKGAVYSMVEFNGKLLA EVKGAVYSMVEFNGKLLASINSTVRLYEWT K G A G K L 1 0 1 0 0 0 1 2 0 0 0 1 1 1 0 1 0 0 1 2 0 0 12 0 1300.6122 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 868 879 DDB1 DNA damage-binding protein 1 yes no 2 0.00060438 72.325 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12456000 0 12456000 12456000 0 12456000 0 0 0 4689 1770 4811 12339 19254 19254 1636 1 GAYDIFLNAK FQKDILIACRLNQKKGAYDIFLNAKEQNIV LNQKKGAYDIFLNAKEQNIVFNAETYSNLI K G A A K E 2 0 1 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 0 0 10 0 1110.571 E5KNY5;P42704;B4DSR0 E5KNY5 1050 1059 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.019072 48.283 2 1.9183 1.9369 NaN 1 Median 1.9183 1.9369 NaN 1 0 Median NaN NaN NaN 0 0 Median 8248900 2881400 5367400 8248900 2881400 5367400 0 0 0 4690 1207 4812 12340;12341 19255;19256;19257 19256 3 GAYPIIFTAWK QCKQDKACRFLAAQKGAYPIIFTAWKLATA AAQKGAYPIIFTAWKLATAGDQGLLLQSLN K G A W K L 2 0 0 0 0 0 0 1 0 2 0 1 0 1 1 0 1 1 1 0 0 0 11 0 1265.6808 Q6NXE6;F5H2X2;F5H2K4;F5GWV0;F5H4P3;B4E1N1;Q68CW5;F5H6J3 Q6NXE6 135 145 ARMC6;DKFZp762A1314 Armadillo repeat-containing protein 6 yes no 2 0.015028 54.608 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2872200 2872200 0 2872200 2872200 0 0 0 0 4691 1848 4813 12342 19258;19259 19259 2 GCAFAQFMTQEAAQK KYVRIVLHPDTEHSKGCAFAQFMTQEAAQK GCAFAQFMTQEAAQKCLLAASPENEAGGLK K G C Q K C 4 0 0 0 1 3 1 1 0 0 0 1 1 2 0 0 1 0 0 0 0 0 15 0 1686.7494 A0A024R753;Q9NW13;B4DJ90 A0A024R753 377 391 RBM28 RNA-binding protein 28 yes no 2 0.002921 43.544 1 1.3253 1.0444 NaN 1 Median NaN NaN NaN 0 0 Median 1.3253 1.0444 NaN 1 0 Median 2292200 873300 1418900 0 0 0 2292200 873300 1418900 4692 214 4814 12343 19260 19260 1 GCAFVTFTTR IEECRILRGPDGLSRGCAFVTFTTRAMAQT DGLSRGCAFVTFTTRAMAQTAIKAMHQAQT R G C T R A 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 3 0 0 1 0 0 10 0 1158.5492 G5EA30;Q92879 G5EA30 176 185 CELF1 CUGBP Elav-like family member 1 yes no 2 0.00095588 78.516 1 2.3023 2.2901 NaN 1 Median 2.3023 2.2901 NaN 1 0 Median NaN NaN NaN 0 0 Median 8508700 3298300 5210400 8508700 3298300 5210400 0 0 0 4693 1278 4815 12344 19261 19261 1 GCALQCAILSPAFK KDISTTLNADEAVARGCALQCAILSPAFKV RGCALQCAILSPAFKVREFSVTDAVPFPIS R G C F K V 3 0 0 0 2 1 0 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 14 0 1534.7636 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72;B3KNM0;Q53ZP9;A0A140VKE7;B4DZR0;O95757;D6RJ96;E9PDE8;B4DXT2;O14992;A0A087WTS8;A0A087WYC1;Q59GF8;V9HW33;B4DH02;P34932;B4DT47;B4DIZ3;B4DUS3;B4E354;B4E0H6 A0A024RDQ0 375 388 HSPH1;HSPA4L;HS24/p52;HSPA4;HEL-S-5a Heat shock protein 105 kDa;Heat shock 70 kDa protein 4L;Heat shock 70 kDa protein 4 no no 2 9.2756E-05 89.548 2 2 1.225 1.0054 NaN 1 Median NaN NaN NaN 0 0 Median 1.225 1.0054 NaN 1 0 Median 30914000 4647900 26266000 23396000 0 23396000 7517700 4647900 2869900 4694 390;624;404 4816 12345;12346;12347;12348 19262;19263;19264;19265;19266 19263 5 GCAVVEFK VTYVELLMDAEGKSRGCAVVEFKMEESMKK DAEGKSRGCAVVEFKMEESMKKAAEVLNKH R G C F K M 1 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 908.44259 P52272;Q59ES8;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYL3 P52272 113 120 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.017319 67.032 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32280000 0 32280000 32280000 0 32280000 0 0 0 4695 1599 4817 12349;12350 19267;19268 19267 2 GCGTVLLSGPR GKILTFDQLALDSPKGCGTVLLSGPRKGRE DSPKGCGTVLLSGPRKGREVYRHFGKAPGT K G C P R K 0 1 0 0 1 0 0 3 0 0 2 0 0 0 1 1 1 0 0 1 0 0 11 0 1115.5757 G3V203;A0A024QZD1;J3QQ67;Q07020;Q0QEW2;H0YHA7;F8VUA6 G3V203 133 143 RPL18 60S ribosomal protein L18 yes no 2 5.5312E-13 148.14 2 2 0.87006 0.87249 16.265 4 Median 0.86276 1.0074 1.1776 2 0 Median 0.88116 0.76027 0.31603 2 0 Median 577940000 318020000 259920000 513500000 285880000 227620000 64437000 32133000 32304000 4696 16 4818 12351;12352;12353;12354 19269;19270;19271;19272;19273;19274;19275;19276;19277;19278;19279;19280;19281;19282;19283 19270 15 GCHLLVATPGR YGGADIGQQIRDLERGCHLLVATPGRLVDM DLERGCHLLVATPGRLVDMMERGKIGLDFC R G C G R L 1 1 0 0 1 0 0 2 1 0 2 0 0 0 1 0 1 0 0 1 0 0 11 0 1179.6183 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010 A0A0D9SFB3 316 326 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 0.00012718 94.309 4 2 1.4627 1.5016 20.402 5 Median 1.6235 1.6235 11.166 3 0 Median 1.3573 1.1883 9.0419 2 0 Median 184860000 62285000 122580000 182150000 61133000 121020000 2716000 1152400 1563600 4697 522 4819 12355;12356;12357;12358;12359;12360 19284;19285;19286;19287;19288;19289;19290 19287 7 GCIVDANLSVLNLVIVK YRPRRTGERKRKSVRGCIVDANLSVLNLVI IVDANLSVLNLVIVKKGEKDIPGLTDTTVP R G C V K K 1 0 2 1 1 0 0 1 0 2 3 1 0 0 0 1 0 0 0 4 0 0 17 0 1826.0336 Q96DV6;A2A3R6;P62753;Q9BZU1;A2A3R5 Q96DV6 99 115 RPS6 40S ribosomal protein S6 no no 2 6.8556E-127 243.11 5 4 1.1207 1.0807 21.132 8 Median 0.77718 0.84544 13.033 4 0 Median 1.4727 1.2557 5.7508 4 0 Median 1432200000 722780000 709440000 835570000 477020000 358550000 596650000 245760000 350890000 4698 649;648 4820 12361;12362;12363;12364;12365;12366;12367;12368;12369 19291;19292;19293;19294;19295;19296;19297;19298;19299;19300;19301;19302;19303;19304;19305;19306 19305 16 GCLFYGPPGTGK LYPEVFEKFKIQPPRGCLFYGPPGTGKTLV PPRGCLFYGPPGTGKTLVARALANECSQGD R G C G K T 0 0 0 0 1 0 0 4 0 0 1 1 0 1 2 0 1 0 1 0 0 0 12 0 1252.591 A0A024R9G7;Q6PL18;Q9ULI0 A0A024R9G7 462 473 ATAD2;ATAD2B ATPase family AAA domain-containing protein 2;ATPase family AAA domain-containing protein 2B no no 2 0.041638 43.282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 985410 0 985410 0 0 0 985410 0 985410 4699 278;2108 4821 12370 19307 19307 1 GCLVTASADK HNDEISGLDLSSQIKGCLVTASADKYVKIW SSQIKGCLVTASADKYVKIWDILGDRPSLV K G C D K Y 2 0 0 1 1 0 0 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1020.491 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 399 408 PWP1 Periodic tryptophan protein 1 homolog yes no 2 2.4698E-05 99.802 2 1 0.86548 0.86565 18.022 3 Median 0.80468 0.81466 8.5865 2 0 Median 1.3848 1.093 NaN 1 0 Median 47552000 26744000 20808000 44330000 25280000 19050000 3222300 1463800 1758500 4700 339 4822 12371;12372;12373 19308;19309;19310 19309 3 GCPVNTEPSGPTCEK ASPPSGCPMHEGKMKGCPVNTEPSGPTCEK GCPVNTEPSGPTCEKKTYSVPAHQERAYEY K G C E K K 0 0 1 0 2 0 2 2 0 0 0 1 0 0 3 1 2 0 0 1 0 0 15 0 1631.692 A0A024RBY9;P53701 A0A024RBY9 34 48 HCCS Cytochrome c-type heme lyase yes no 2 4.4241E-05 85.813 2 0.88624 0.90737 23.708 2 Median 0.88624 0.90737 23.708 2 0 Median NaN NaN NaN 0 0 Median 21875000 11281000 10594000 21875000 11281000 10594000 0 0 0 4701 350 4823 12374;12375 19311;19312;19313 19311 3 GCQAEADRAEVSR LRVTVCQALRTLITKGCQAEADRAEVSRFA TKGCQAEADRAEVSRFAKNFLPILFNLYGQ K G C S R F 3 2 0 1 1 1 2 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 13 1 1447.6474 B3KMR5;Q5JTH9;B3KY97 B3KMR5 672 684 RRP12 RRP12-like protein yes no 3 0.031317 27.409 1 1 1.0811 1.0228 18.494 2 Median 1.1922 1.1657 NaN 1 0 Median 0.98028 0.89741 NaN 1 0 Median 3944300 1807800 2136500 2326100 930770 1395300 1618200 877030 741170 4702 907 4824 12376;12377 19314;19315 19314 2 GCTATLGNFAK LLMMAGIDDCYTSARGCTATLGNFAKATFD TSARGCTATLGNFAKATFDAISKTYSYLTP R G C A K A 2 0 1 0 1 0 0 2 0 0 1 1 0 1 0 0 2 0 0 0 0 0 11 0 1138.5441 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PQD7;Q9BSW5;O60249;Q8NI62 P15880 228 238 RPS2;rps2;OK/KNS-cl.6 40S ribosomal protein S2 no no 2 4.7131E-10 130.56 2 2 1.0536 1.2975 29.953 4 Linear 1.0263 1.2169 5.5345 2 0 Median 0.84958 0.72681 2.1386 2 0 Median 1389900000 675900000 714020000 1220600000 583250000 637320000 169340000 92645000 76699000 4703 1485;1930 4825 12378;12379;12380;12381 19316;19317;19318;19319;19320;19321;19322;19323 19316 8 GDAASSPAPAASVGSSQGGAR TAGRPPRTFEEALARGDAASSPAPAASVGS PAPAASVGSSQGGARKRQVDADLQPAGSLP R G D A R K 6 1 0 1 0 1 0 4 0 0 0 0 0 0 2 5 0 0 0 1 0 0 21 0 1799.8398 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6;B4DEY3;F8WCC1 E7EXA6 59 79 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 2 4.4976E-08 91.812 2 1.294 1.3285 17.596 2 Median 1.294 1.3285 17.596 2 0 Median NaN NaN NaN 0 0 Median 20174000 9742700 10431000 20174000 9742700 10431000 0 0 0 4704 524 4826 12382;12383 19324;19325 19325 2 GDADMYDLPK SAASSYSFSDLNSTRGDADMYDLPKKEDAL LNSTRGDADMYDLPKKEDALLYQSKGYNDD R G D P K K 1 0 0 3 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 0 0 0 10 0 1123.4856 P50402;Q5HY57 P50402 69 78 EMD Emerin yes no 2 0.0043062 55.461 2 0.77347 0.84471 0.92654 2 Median 0.77347 0.84471 0.92654 2 0 Median NaN NaN NaN 0 0 Median 79404000 45050000 34353000 79404000 45050000 34353000 0 0 0 4705 1590 4827 12384;12385 19326;19327;19328;19329;19330 19330 1371 5 GDADQASNILASFGLSAR NIGSRGPLPLSSQHRGDADQASNILASFGL DQASNILASFGLSARDLDELSRYPEDKITP R G D A R D 4 1 1 2 0 1 0 2 0 1 2 0 0 1 0 3 0 0 0 0 0 0 18 0 1791.8751 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991 D6REM6 103 120 MATR3;DKFZp686K23100 Matrin-3 yes no 2 2.2685E-92 202.25 2 2 1.1808 1.1598 35.84 4 Median 1.3831 1.564 0.89415 2 0 Median 1.02 0.84181 3.9273 2 0 Median 155180000 64722000 90460000 125160000 50359000 74805000 30018000 14363000 15654000 4706 542 4828 12386;12387;12388;12389 19331;19332;19333;19334;19335;19336;19337;19338 19331 8 GDASLLQDGVLAEK QFVFSITEFATKQPKGDASLLQDGVLAEKL KGDASLLQDGVLAEKLSLKPHQGPVLRSNS K G D E K L 2 0 0 2 0 1 1 2 0 0 3 1 0 0 0 1 0 0 0 1 0 0 14 0 1414.7304 B4DFE2;A8K5V5;Q96QT6 B4DFE2 956 969 PHF12 PHD finger protein 12 yes no 2 0.0028148 59.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4707 752 4829 12390 19339 19339 1 GDCSAELGGDPSSNSEK EKCDHEGPCSVDRLKGDCSAELGGDPSSNS CSAELGGDPSSNSEKPHCHPKKDECSSETD K G D E K P 1 0 1 2 1 0 2 3 0 0 1 1 0 0 1 4 0 0 0 0 0 0 17 0 1708.6846 Q13129;Q59GL0 Q13129 1225 1241 RLF Zinc finger protein Rlf yes no 2 7.752E-05 63.727 2 0.82509 0.83548 6.9003 2 Median 0.82509 0.83548 6.9003 2 0 Median NaN NaN NaN 0 0 Median 10542000 4592600 5949700 10542000 4592600 5949700 0 0 0 4708 1705 4830 12391;12392 19340;19341;19342;19343;19344 19342 5 GDDEEWNEVLNK VGKLKSMDLSEYIIRGDDEEWNEVLNKAGP IIRGDDEEWNEVLNKAGPNASIISLKSDKK R G D N K A 0 0 2 2 0 0 3 1 0 0 1 1 0 0 0 0 0 1 0 1 0 0 12 0 1446.6263 Q9H0A0;A0A087WV29 Q9H0A0 967 978 NAT10 N-acetyltransferase 10 yes no 2 8.1414E-23 157.66 2 2 1.0577 0.99466 15.057 4 Median 0.78171 0.87553 5.6655 2 0 Median 1.4157 1.124 4.909 2 0 Median 155930000 81220000 74711000 125470000 68885000 56581000 30464000 12335000 18129000 4709 2023 4831 12393;12394;12395;12396 19345;19346;19347;19348;19349;19350;19351;19352 19346 8 GDDLQAIK SKSGQRGSSKSGKLKGDDLQAIKKELTQIK SKSGKLKGDDLQAIKKELTQIKQKVDSLLE K G D I K K 1 0 0 2 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 858.4447 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;D3DPI2;G3V5V7;B4DQQ2;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V2D6 G3V4W0 177 184 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 2 0.011116 70.67 1 0.83023 0.94467 NaN 1 Median 0.83023 0.94467 NaN 1 0 Median NaN NaN NaN 0 0 Median 146740000 74415000 72324000 146740000 74415000 72324000 0 0 0 4710 837;781 4832 12397 19353 19353 1 GDDLQAIKK SKSGQRGSSKSGKLKGDDLQAIKKELTQIK KSGKLKGDDLQAIKKELTQIKQKVDSLLEN K G D K K E 1 0 0 2 0 1 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 9 1 986.53966 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V5V7;B4DQQ2;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V2D6 G3V4W0 177 185 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 no no 2 1.3743E-07 141.52 2 2 0.80206 0.79917 53.912 4 Median 1.0989 1.2861 5.3525 2 0 Median 0.59577 0.50648 2.5591 2 0 Median 157270000 79223000 78044000 136750000 66577000 70176000 20515000 12646000 7868700 4711 837;781 4833 12398;12399;12400;12401 19354;19355;19356;19357;19358;19359;19360;19361 19357 8 GDEELDSLIK KVKRITPRHLQLAIRGDEELDSLIKATIAG QLAIRGDEELDSLIKATIAGGGVIPHIHKS R G D I K A 0 0 0 2 0 0 2 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1117.5503 Q71UI9;P0C0S5;C9J0D1;C9J386 Q71UI9 93 102 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z;Histone H2A yes no 2 9.0893E-12 139.78 4 2 0.74853 0.78975 7.0731 6 Median 0.68297 0.81013 8.8538 4 0 Median 0.86324 0.76365 3.0984 2 0 Median 8473900000 4862000000 3611800000 7509500000 4346000000 3163500000 964400000 516030000 448370000 4712 1462 4834 12402;12403;12404;12405;12406;12407 19362;19363;19364;19365;19366;19367;19368;19369;19370;19371;19372;19373;19374;19375;19376;19377;19378;19379;19380;19381;19382;19383;19384;19385;19386 19364 25 GDEVDGVDEVAK LKKQLPGVKSEGKRKGDEVDGVDEVAKKKS KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK K G D A K K 1 0 0 3 0 0 2 2 0 0 0 1 0 0 0 0 0 0 0 3 0 0 12 0 1231.5568 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q96P95 A0A024R3T8 210 221 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 7.2655E-29 153.97 2 1 1.2268 0.99713 NaN 1 Median NaN NaN NaN 0 0 Median 1.2268 0.99713 NaN 1 0 Median 46194000 44842000 1352300 43496000 43496000 0 2697900 1345600 1352300 4713 139 4835 12408;12409;12410 19387;19388;19389 19387 3 GDEVIFGEFSWPK VLRQYNIQKKEIVVKGDEVIFGEFSWPKNV VKGDEVIFGEFSWPKNVKTNYVVWGTGKEG K G D P K N 0 0 0 1 0 0 2 2 0 1 0 1 0 2 1 1 0 1 0 1 0 0 13 0 1509.714 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 22 34 CDC73 Parafibromin yes no 2 0.0018639 56.094 1 1.8068 1.4146 NaN 1 Median NaN NaN NaN 0 0 Median 1.8068 1.4146 NaN 1 0 Median 3866200 1312600 2553600 0 0 0 3866200 1312600 2553600 4714 1851 4836 12411 19390 19390 1 GDFDENLNYPEQK YDYLKTLAGDVHIVRGDFDENLNYPEQKVV VRGDFDENLNYPEQKVVTVGQFKIGLIHGH R G D Q K V 0 0 2 2 0 1 2 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 13 0 1567.6791 Q5JPE4;F8VXU5;Q9UBQ0 Q5JPE4 60 72 DKFZp667O202;VPS29 Vacuolar protein sorting-associated protein 29 yes no 2 0.0016579 70.942 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4715 1261 4837 12412 19391 19391 1 GDFILVGDLMR CNHYNNIMALYLKTKGDFILVGDLMRSVLL LKTKGDFILVGDLMRSVLLLAYKPMEGNFE K G D M R S 0 1 0 2 0 0 0 2 0 1 2 0 1 1 0 0 0 0 0 1 0 0 11 0 1234.638 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 918 928 DDB1 DNA damage-binding protein 1 yes no 2 0.0075017 52.49 2 0.66117 0.68313 NaN 1 Median 0.66117 0.68313 NaN 1 0 Median NaN NaN NaN 0 0 Median 6515000 4292300 2222700 6515000 4292300 2222700 0 0 0 4716 1770 4838 12413;12414 19392;19393;19394 19394 3 GDFLALDLGGTNFR MLPTYVCATPDGTEKGDFLALDLGGTNFRV KGDFLALDLGGTNFRVLLVRVRNGKWGGVE K G D F R V 1 1 1 2 0 0 0 3 0 0 3 0 0 2 0 0 1 0 0 0 0 0 14 0 1494.7467 Q68E10;E9PB90;A8K2U2;P52789;Q53QX9;A0A024R7R1;Q59H08;P52790 Q68E10 498 511 DKFZp686M1669;HK2;HK3 Hexokinase;Hexokinase-2;Hexokinase-3 yes no 2 0.00010451 84.479 3 1.8962 1.8875 NaN 1 Median 1.8962 1.8875 NaN 1 0 Median NaN NaN NaN 0 0 Median 19005000 7306500 11699000 19005000 7306500 11699000 0 0 0 4717 714 4839 12415;12416;12417 19395;19396;19397;19398 19396 4 GDFLASLENDIK VEVDMEKAESLQVTRGDFLASLENDIKPAF VTRGDFLASLENDIKPAFGTNQEDYASYIM R G D I K P 1 0 1 2 0 0 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 12 0 1320.6561 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;B4DGR3;Q96D47;D3DXJ4 I3L0N3 473 484 NSF Vesicle-fusing ATPase yes no 2 0.020076 39.625 1 1.1493 1.2019 NaN 1 Median 1.1493 1.2019 NaN 1 0 Median NaN NaN NaN 0 0 Median 10294000 3054100 7239800 10294000 3054100 7239800 0 0 0 4718 1096 4840 12418 19399 19399 1 GDFSYIGNLMTK LSYIQSIPVVNEEHRGDFSYIGNLMTKEFI EHRGDFSYIGNLMTKEFIGQQLILIIKSLD R G D T K E 0 0 1 1 0 0 0 2 0 1 1 1 1 1 0 1 1 0 1 0 0 0 12 0 1344.6384 Q9BPX3;Q6NUR1 Q9BPX3 387 398 NCAPG Condensin complex subunit 3 yes no 2 1.721E-05 99.568 2 4 1.2845 1.3653 26.81 6 Median 1.2845 1.4447 6.0255 2 0 Median 1.3595 1.0937 28.673 4 0 Median 270970000 125280000 145690000 225630000 104990000 120640000 45340000 20286000 25054000 4719 1995 4841;4842 12419;12420;12421;12422;12423;12424 19400;19401;19402;19403;19404;19405;19406;19407;19408 19400 1825 9 GDFYTAHGEDALLAAR GMPEKPTTTVRLFDRGDFYTAHGEDALLAA DFYTAHGEDALLAAREVFKTQGVIKYMGPA R G D A R E 4 1 0 2 0 0 1 2 1 0 2 0 0 1 0 0 1 0 1 0 0 0 16 0 1705.806 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;V9H068;V9H0D5;V9H023;B4DN49;V9H0B2;Q0ZAJ2;V9H062;V9H015 V9H019 40 55 MSH2 DNA mismatch repair protein Msh2 yes no 3 0.00071287 41.422 2 1.0643 1.1377 0.48596 2 Median 1.0643 1.1377 0.48596 2 0 Median NaN NaN NaN 0 0 Median 40545000 20154000 20392000 40545000 20154000 20392000 0 0 0 4720 1237 4843 12425;12426 19409;19410 19409 2 GDGPICLVLAPTR LPAIVHINHQPFLERGDGPICLVLAPTREL ERGDGPICLVLAPTRELAQQVQQVAAEYCR R G D T R E 1 1 0 1 1 0 0 2 0 1 2 0 0 0 2 0 1 0 0 1 0 0 13 0 1367.7231 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3QRQ7;J3KRZ1;Q59F66;Q92841;B4DZQ7 B4DN41 154 166 DDX5;DKFZp686J01190;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 2 9.8064E-09 115.29 2 2 1.3872 1.6215 39.317 4 Linear 1.31 1.4735 4.0677 2 0 Median 0.89054 0.74909 6.6453 2 0 Median 186120000 82740000 103380000 142700000 59486000 83210000 43425000 23253000 20172000 4721 1009;1801 4844 12427;12428;12429;12430 19411;19412;19413;19414;19415;19416;19417;19418;19419;19420;19421;19422 19418 12 GDGVTPPAGTAAPAPPPLSQDVPGR CGEDASEAQEVTIPRGDGVTPPAGTAAPAP AAPAPPPLSQDVPGRADTSQPSARMRGHGE R G D G R A 4 1 0 2 0 1 0 4 0 0 1 0 0 0 7 1 2 0 0 2 0 0 25 0 2324.1761 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 Q59FM7 365 389 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 5.5919E-09 62.055 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11339000 11339000 0 11339000 11339000 0 0 0 0 4722 364 4845 12431;12432;12433 19423;19424;19425 19423 3 GDHVIGIVTAK VYWVDSQQKRYVPVKGDHVIGIVTAKSGDI VPVKGDHVIGIVTAKSGDIFKVDVGGSEPA K G D A K S 1 0 0 1 0 0 0 2 1 2 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1108.6241 Q9NQT5;Q9NYS3 Q9NQT5 114 124 EXOSC3;PNAS-3 Exosome complex component RRP40 yes no 2;3 1.7293E-05 105.98 2 0.92553 0.99901 6.4814 2 Median 0.92553 0.99901 6.4814 2 0 Median NaN NaN NaN 0 0 Median 64812000 34972000 29840000 64812000 34972000 29840000 0 0 0 4723 2061 4846 12434;12435 19426;19427 19426 2 GDIIGVQGNPGK KSEEEFIHINNKLRRGDIIGVQGNPGKTKK LRRGDIIGVQGNPGKTKKGELSIIPYEITL R G D G K T 0 0 1 1 0 1 0 4 0 2 0 1 0 0 1 0 0 0 0 1 0 0 12 0 1153.6091 Q15046;J3KRL2;H3BPV7;H3BVA8 Q15046 179 190 KARS Lysine--tRNA ligase yes no 2 0.021103 50.805 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4724 1749 4847 12436 19428 19428 1 GDILVVATGQPEMVK TCHSKTAHLDEEVNKGDILVVATGQPEMVK GDILVVATGQPEMVKGEWIKPGAIVIDCGI K G D V K G 1 0 0 1 0 1 1 2 0 1 1 1 1 0 1 0 1 0 0 3 0 0 15 0 1555.828 A0A024R652;P11586;F5H2F4 A0A024R652 209 223 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00010684 64.55 2 2.0937 2.1111 42.196 2 Median 2.0937 2.1111 42.196 2 0 Median NaN NaN NaN 0 0 Median 29257000 11126000 18131000 29257000 11126000 18131000 0 0 0 4725 196 4848 12437;12438 19429;19430 19429 158 2 GDINILLIGDPSVAK LGGVERDLENGSHIRGDINILLIGDPSVAK GDINILLIGDPSVAKSQLLRYVLCTAPRAI R G D A K S 1 0 1 2 0 0 0 2 0 3 2 1 0 0 1 1 0 0 0 1 0 0 15 0 1523.8559 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 337 351 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 4.6328E-10 113.24 2 2 0.87864 0.79428 45.317 4 Median 1.1116 1.1574 6.2203 2 0 Median 0.66047 0.53236 9.5648 2 0 Median 77999000 36252000 41747000 64947000 28879000 36067000 13052000 7372900 5679400 4726 568 4849 12439;12440;12441;12442 19431;19432;19433;19434;19435;19436;19437;19438;19439;19440 19431 10 GDIWWNPEQLK KKFIYALKAPKSFPKGDIWWNPEQLKEDSR SFPKGDIWWNPEQLKEDSRDYLHLLIGLFE K G D L K E 0 0 1 1 0 1 1 1 0 1 1 1 0 0 1 0 0 2 0 0 0 0 11 0 1384.6776 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1 B2RWN5 809 819 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0063655 54.539 2 1 0.73687 0.79252 21.31 3 Median 0.73621 0.76382 5.2158 2 0 Median 1.3406 1.0987 NaN 1 0 Median 49056000 27663000 21393000 40330000 23327000 17004000 8725800 4336400 4389400 4727 897 4850 12443;12444;12445 19441;19442;19443 19443 3 GDKVDILYNNIK SLEAHVNGFRFTSVRGDKVDILYNNIKHAL SVRGDKVDILYNNIKHALFQPCDGEMIIVL R G D I K H 0 0 2 2 0 0 0 1 0 2 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1390.7456 Q9Y5B9 Q9Y5B9 694 705 SUPT16H FACT complex subunit SPT16 yes yes 2 0.044329 47.971 2 0.84578 0.71859 4.1865 2 Median NaN NaN NaN 0 0 Median 0.84578 0.71859 4.1865 2 0 Median 18166000 9818400 8347800 0 0 0 18166000 9818400 8347800 4728 2148 4851 12446;12447 19444;19445 19444 2 GDLDLELVLLCK GVMRVGLVAKGLLLKGDLDLELVLLCKEKP LLKGDLDLELVLLCKEKPTTALLDKVADNL K G D C K E 0 0 0 2 1 0 1 1 0 0 5 1 0 0 0 0 0 0 0 1 0 0 12 0 1386.7429 F4ZW64;F4ZW65;A0A024R7C7;F4ZW66;Q12906;A8K590;Q59GP7;K7EKJ9;K7EKY0;K7ER69;K7EJ09 F4ZW64 106 117 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.018103 51.927 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1218300 0 1218300 1218300 0 1218300 0 0 0 4729 220 4852 12448 19446 19446 1 GDLETLQPGDDVEFTIK GDVVKEIFFHYSEFKGDLETLQPGDDVEFT LETLQPGDDVEFTIKDRNGKEVATDVRLLP K G D I K D 0 0 0 3 0 1 2 2 0 1 2 1 0 1 1 0 2 0 0 1 0 0 17 0 1875.9102 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;E9PNG3 Q9GZV0 187 203 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 6.8726E-09 100.55 2 1 2.5533 2.826 32.848 3 Plateau 2.5671 2.8083 0.88824 2 0 Median 1.9835 1.59 NaN 1 0 Median 90253000 27738000 62515000 81922000 24648000 57273000 8331300 3090000 5241300 4730 42 4853 12449;12450;12451 19447;19448;19449;19450;19451;19452;19453 19447 7 GDLGIEIPAEK FDEILEASDGIMVARGDLGIEIPAEKVFLA MVARGDLGIEIPAEKVFLAQKMMIGRCNRA R G D E K V 1 0 0 1 0 0 2 2 0 2 1 1 0 0 1 0 0 0 0 0 0 0 11 0 1140.6027 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;A0A024R609;Q8WUW7;Q504U3;H3BR70;B4DPM0;Q16716;Q16715;P30613 V9HWB8 295 305 HEL-S-30;PKM;PKM2;PKLR Pyruvate kinase;Pyruvate kinase PKM;Pyruvate kinase PKLR yes no 2 1.7333E-06 112.04 2 2 2.4889 2.4265 52.523 4 Median 3.286 3.783 0.89973 2 0 Median 1.8836 1.5245 3.8348 2 0 Median 420540000 101850000 318690000 403160000 96201000 306960000 17375000 5652500 11723000 4731 1481 4854 12452;12453;12454;12455 19454;19455;19456;19457;19458;19459 19455 6 GDLIGVVEALTR QRGSGKKELVGEYGRGDLIGVVEALTRQPR YGRGDLIGVVEALTRQPRATTVHAVRDTEL R G D T R Q 1 1 0 1 0 0 1 2 0 1 2 0 0 0 0 0 1 0 0 2 0 0 12 0 1241.698 Q8IY17 Q8IY17 685 696 PNPLA6 Neuropathy target esterase yes yes 2 0.0050534 51.927 2 0.6803 0.72358 14.232 2 Median 0.6803 0.72358 14.232 2 0 Median NaN NaN NaN 0 0 Median 7174100 4599600 2574600 7174100 4599600 2574600 0 0 0 4732 1895 4855 12456;12457 19460;19461;19462 19462 3 GDLLQVVQEAFEK GGKTQEVPTACPDWRGDLLQVVQEAFEKEQ WRGDLLQVVQEAFEKEQEMQGVELQPRLSG R G D E K E 1 0 0 1 0 2 2 1 0 0 2 1 0 1 0 0 0 0 0 2 0 0 13 0 1474.7668 O95613 O95613 2451 2463 PCNT Pericentrin yes yes 2 0.00013556 73.632 2 0.52663 0.58716 NaN 1 Median 0.52663 0.58716 NaN 1 0 Median NaN NaN NaN 0 0 Median 4691400 3834400 856950 4691400 3834400 856950 0 0 0 4733 1429 4856 12458;12459 19463;19464;19465 19463 3 GDLNDCFIPCTPK DVDGLTSINAGRLARGDLNDCFIPCTPKGC ARGDLNDCFIPCTPKGCLELIKETGVPIAG R G D P K G 0 0 1 2 2 0 0 1 0 1 1 1 0 1 2 0 1 0 0 0 0 0 13 0 1535.6748 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 138 150 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0055975 57.175 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7566600 3028700 4537900 7566600 3028700 4537900 0 0 0 4734 196 4857 12460;12461;12462;12463 19466;19467;19468;19469 19468 4 GDLSTALEVAIDCYEK STNISFPLVTVHLEKGDLSTALEVAIDCYE DLSTALEVAIDCYEKYKVLPRIHDVLCKLV K G D E K Y 2 0 0 2 1 0 2 1 0 1 2 1 0 0 0 1 1 0 1 1 0 0 16 0 1782.8346 E5KNY5;P42704;B4DSR0 E5KNY5 836 851 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 5.5001E-05 83.204 2 1 1.9481 1.9706 65.921 3 Median 2.024 2.0278 4.0472 2 0 Median 0.82686 0.64808 NaN 1 0 Median 20308000 8146200 12162000 17118000 6406500 10712000 3189800 1739700 1450200 4735 1207 4858 12464;12465;12466 19470;19471;19472 19471 3 GDNSSVSSLCISPDGK VEWNVQTCKVKCKWKGDNSSVSSLCISPDG DNSSVSSLCISPDGKMLLSAGRTIKLWVLE K G D G K M 0 0 1 2 1 0 0 2 0 1 1 1 0 0 1 5 0 0 0 1 0 0 16 0 1621.7254 Q15061;C9JEE7 Q15061 166 181 WDR43 WD repeat-containing protein 43 yes no 2 0.00011687 98.942 2 2 0.99724 0.9485 2.3234 4 Median 0.85638 0.95263 0.68161 2 0 Median 1.1608 0.92873 3.0455 2 0 Median 135460000 70234000 65221000 111020000 59134000 51884000 24438000 11101000 13337000 4736 1752 4859 12467;12468;12469;12470 19473;19474;19475;19476;19477;19478;19479 19475 7 GDPEAALIQYLTNEEAR FSKFGTIVNIQVAFKGDPEAALIQYLTNEE PEAALIQYLTNEEARKAISSTEAVLNNRFI K G D A R K 3 1 1 1 0 1 3 1 0 1 2 0 0 0 1 0 1 0 1 0 0 0 17 0 1888.9167 D3DQF6;B3KY61;U3KPZ7;Q9P2N5 D3DQF6 324 340 POU4F3;RBM27 RNA-binding protein 27 yes no 2 0.020738 41.401 1 0.93954 1.0208 NaN 1 Median 0.93954 1.0208 NaN 1 0 Median NaN NaN NaN 0 0 Median 1676500 806830 869660 1676500 806830 869660 0 0 0 4737 958 4860 12471 19480 19480 0 GDPLGGVISNYLLEK SSRFGKYMDIEFDFKGDPLGGVISNYLLEK GDPLGGVISNYLLEKSRVVKQPRGERNFHV K G D E K S 0 0 1 1 0 0 1 3 0 1 3 1 0 0 1 1 0 0 1 1 0 0 15 0 1573.8352 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5;Q14777 E9PDF6 178 192 MYO1B Unconventional myosin-Ib yes no 2 2.0046E-07 108.59 2 1.8997 1.9515 3.645 2 Median 1.8997 1.9515 3.645 2 0 Median NaN NaN NaN 0 0 Median 32772000 10751000 22022000 32772000 10751000 22022000 0 0 0 4738 805 4861 12472;12473 19481;19482;19483;19484;19485 19484 5 GDPLLDQR LRSPTLYGISHDDLKGDPLLDQRRLDLVHT ISHDDLKGDPLLDQRRLDLVHTAALMLDKN K G D Q R R 0 1 0 2 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 8 0 912.46649 O75643;A4FU77;Q9H8B9 O75643 945 952 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.027474 53.878 1 1.241 1.3129 NaN 1 Median 1.241 1.3129 NaN 1 0 Median NaN NaN NaN 0 0 Median 40988000 20806000 20182000 40988000 20806000 20182000 0 0 0 4739 1411 4862 12474 19486 19486 1 GDQPAASGDSDDDEPPPLPR LLLGLCIFLLYKIVRGDQPAASGDSDDDEP ASGDSDDDEPPPLPRLKRRDFTPAELRRFD R G D P R L 2 1 0 5 0 1 1 2 0 0 1 0 0 0 5 2 0 0 0 0 0 0 20 0 2034.8767 Q6IB11;O00264 Q6IB11 48 67 PGRMC1 Membrane-associated progesterone receptor component 1 yes no 2 0.00094899 47.774 2 0.92529 0.95045 NaN 1 Median 0.92529 0.95045 NaN 1 0 Median NaN NaN NaN 0 0 Median 9278100 2959000 6319100 9278100 2959000 6319100 0 0 0 4740 1361 4863 12475;12476 19487;19488;19489 19489 3 GDSESEEDEDLEVPVPSR HPPPEPGPDRVADAKGDSESEEDEDLEVPV ESEEDEDLEVPVPSRFNRRVSVCAETYNPD K G D S R F 0 1 0 3 0 0 5 1 0 0 1 0 0 0 2 3 0 0 0 2 0 0 18 0 1987.8494 A0A0S2Z472;A8KAH7;A0A024R2W3;P13861 A0A0S2Z472 76 93 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 0.00033533 62.042 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10993000 0 10993000 10993000 0 10993000 0 0 0 4741 124 4864 12477;12478 19490;19491 19490 2 GDSPLHSIR VLTTYNILTHDYGTKGDSPLHSIRWLRVIL HDYGTKGDSPLHSIRWLRVILDEGHAIRNP K G D I R W 0 1 0 1 0 0 0 1 1 1 1 0 0 0 1 2 0 0 0 0 0 0 9 0 980.50394 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;H7C5K0 Q59GQ7 542 550 HLTF Helicase-like transcription factor yes no 2 0.0089737 64.654 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4742 512 4865 12479 19492 19492 1 GDSVIVVLR KPVNKDRYISKMFLRGDSVIVVLRNPLIAG SKMFLRGDSVIVVLRNPLIAGK________ R G D L R N 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 3 0 0 9 0 956.56548 P62316;K7EJB5 P62316 103 111 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.0013201 86.794 2 1 0.7422 0.71749 55.573 2 Median 0.97053 1.0629 NaN 1 0 Median 0.56758 0.48434 NaN 1 0 Median 51950000 34986000 16964000 49043000 33242000 15800000 2907100 1743300 1163800 4743 1645 4866 12480;12481;12482 19493;19494;19495;19496 19493 4 GDTHEASACLGFQEEDPPGEK KGLEQGGKASDGISKGDTHEASACLGFQEE SACLGFQEEDPPGEKVASLPGDFKQEEVGG K G D E K V 2 0 0 2 1 1 4 3 1 0 1 1 0 1 2 1 1 0 0 0 0 0 21 0 2272.9543 Q7Z5J4;A8MXE8 Q7Z5J4 782 802 RAI1 Retinoic acid-induced protein 1 yes no 3 0.00012755 25.496 2 2.3445 1.8969 21.488 2 Median NaN NaN NaN 0 0 Median 2.3445 1.8969 21.488 2 0 Median 4284500 1494700 2789900 0 0 0 4284500 1494700 2789900 4744 1879 4867 12483;12484 19497;19498 19497 2 GDTPGHATPGHGGATSSAR PTPSHTPAGAATPGRGDTPGHATPGHGGAT GHATPGHGGATSSARKNRWDETPKTERDTP R G D A R K 3 1 0 1 0 0 0 5 2 0 0 0 0 0 2 2 3 0 0 0 0 0 19 0 1732.7877 O75533;Q7Z497;A0JLT9;Q32Q20;A0PJH5 O75533 271 289 SF3B1 Splicing factor 3B subunit 1 yes no 3 0.0035957 24.3 1 1.235 1.2929 NaN 1 Median 1.235 1.2929 NaN 1 0 Median NaN NaN NaN 0 0 Median 4245200 1883300 2361900 4245200 1883300 2361900 0 0 0 4745 1408 4868 12485 19499 19499 1 GDVAEGDLIEHFSQFGTVEK GAHAKVKKLFVGGLKGDVAEGDLIEHFSQF GDLIEHFSQFGTVEKAEIIADKQSGKKRGF K G D E K A 1 0 0 2 0 1 3 3 1 1 1 1 0 2 0 1 1 0 0 2 0 0 20 0 2177.0277 Q13151 Q13151 107 126 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 1.5829E-09 85.231 4 2 1.1595 1.232 29.806 6 Median 1.2117 1.2674 5.1646 4 0 Median 0.89569 0.72135 8.4603 2 0 Median 310970000 142000000 168960000 270590000 119540000 151050000 40381000 22465000 17917000 4746 1706 4869 12486;12487;12488;12489;12490;12491 19500;19501;19502;19503;19504;19505;19506;19507;19508;19509 19503 10 GDVEEDETIPDSEQDIRPR VNGMKYSDIDIILLKGDVEEDETIPDSEQD EDETIPDSEQDIRPRFHRSRTVAQQHDEDG K G D P R F 0 2 0 4 0 1 4 1 0 2 0 0 0 0 2 1 1 0 0 1 0 0 19 1 2198.9927 A0A024RAM0;Q92973 A0A024RAM0 328 346 TNPO1 Transportin-1 yes no 3 6.1008E-06 53.278 1 2.5035 2.713 NaN 1 Median 2.5035 2.713 NaN 1 0 Median NaN NaN NaN 0 0 Median 25089000 6761900 18327000 25089000 6761900 18327000 0 0 0 4747 309 4870 12492 19510;19511 19511 2 GDVENIEVVQK SRLAVTRVIQALAMKGDVENIEVVQKMLNG LAMKGDVENIEVVQKMLNGLEDSIGLSKMV K G D Q K M 0 0 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 0 3 0 0 11 0 1228.6299 E5KNY5;P42704;B4DSR0 E5KNY5 1153 1163 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 1.0988E-05 108.43 2 1.4811 1.2069 11.568 2 Median NaN NaN NaN 0 0 Median 1.4811 1.2069 11.568 2 0 Median 5255200 1971300 3283900 0 0 0 5255200 1971300 3283900 4748 1207 4871 12493;12494 19512;19513 19513 2 GDVGSADIQDLEK PLKVEFLECSAKGGRGDVGSADIQDLEKWL GRGDVGSADIQDLEKWLAKIA_________ R G D E K W 1 0 0 3 0 1 1 2 0 1 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1345.6361 Q549N5;Q9Y5M8;H7C4H2 Q549N5 253 265 SRPRB Signal recognition particle receptor subunit beta yes no 2 0.00034597 63.408 2 1.3441 1.3555 5.5253 2 Median 1.3441 1.3555 5.5253 2 0 Median NaN NaN NaN 0 0 Median 38427000 17000000 21427000 38427000 17000000 21427000 0 0 0 4749 1794 4872 12495;12496 19514;19515;19516 19515 3 GDVTITNDGATILK ______________________________ KGDVTITNDGATILKQMQVLHPAARMLVEL K G D L K Q 1 0 1 2 0 0 0 2 0 2 1 1 0 0 0 0 3 0 0 1 0 0 14 0 1416.746 B7Z9L0;A8K3C3;P50991;B7Z2Z8 B7Z9L0 10 23 CCT4 T-complex protein 1 subunit delta yes no 2 9.6638E-05 85.813 2 1 2.5687 2.3226 28.291 2 Median 2.8123 2.837 NaN 1 0 Median 2.3463 1.9015 NaN 1 0 Median 52867000 8039800 44828000 50213000 7369000 42844000 2654200 670810 1983400 4750 721 4873 12497;12498;12499 19517;19518;19519;19520 19518 4 GDVVLQSDHVIETLTK SLFVLHVQRADNKQKGDVVLQSDHVIETLT DVVLQSDHVIETLTKTALSANRVNSININQ K G D T K T 0 0 0 2 0 1 1 1 1 1 2 1 0 0 0 1 2 0 0 3 0 0 16 0 1752.9258 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 966 981 MYO1C Unconventional myosin-Ic no no 2;3 0.00015128 67.997 4 3 1.4452 1.2955 4.2267 6 Median 1.1843 1.3152 5.3422 3 0 Median 1.6222 1.3156 3.8543 3 0 Plateau 125550000 47366000 78181000 108490000 41800000 66693000 17054000 5566300 11488000 4751 1088;1189 4874 12500;12501;12502;12503;12504;12505;12506 19521;19522;19523;19524;19525;19526;19527;19528 19525 7 GDYLAVVLATQGHTQVLIHQLSR ICHGKPVTQVTWHGRGDYLAVVLATQGHTQ ATQGHTQVLIHQLSRRRSQSPFRRSHGQVQ R G D S R R 2 1 0 1 0 3 0 2 2 1 4 0 0 0 0 1 2 0 1 3 0 0 23 0 2518.3656 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 546 568 BOP1 Ribosome biogenesis protein BOP1 yes no 3 1.338E-24 125.11 2 1.3236 1.0972 4.9759 2 Median NaN NaN NaN 0 0 Median 1.3236 1.0972 4.9759 2 0 Median 43005000 17746000 25259000 0 0 0 43005000 17746000 25259000 4752 1726 4875 12507;12508 19529;19530;19531 19529 3 GDYPLEAVR LDGADCIMLSGETAKGDYPLEAVRMQHLIA SGETAKGDYPLEAVRMQHLIAREAEAAIYH K G D V R M 1 1 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 1 1 0 0 9 0 1018.5084 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3;H3BR70 V9HWB8 368 376 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 0.019405 51.193 1 2.525 2.7558 NaN 1 Median 2.525 2.7558 NaN 1 0 Median NaN NaN NaN 0 0 Median 51857000 14038000 37819000 51857000 14038000 37819000 0 0 0 4753 1481 4876 12509 19532 19532 1 GEADILAALK TLRRDRDKIQGFQAKGEADILAALKKLQDQ GFQAKGEADILAALKKLQDQRQYIVAEFEQ K G E L K K 3 0 0 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 999.56006 A0A024RCP3;Q12899;A2AE48;A0A0G2JIW2 A0A024RCP3 170 179 TRIM26 Tripartite motif-containing protein 26 yes no 2 0.0099272 57.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4754 365 4877 12510 19533 19533 1 GEAGNSDSMCLR GQKSAKVLMQNQKGKGEAGNSDSMCLRSRK KGKGEAGNSDSMCLRSRKTKSQPAASTLES K G E L R S 1 1 1 1 1 0 1 2 0 0 1 0 1 0 0 2 0 0 0 0 0 0 12 0 1295.5234 P46013;B4DRH3 P46013 3190 3201 MKI67 Antigen KI-67 yes no 2 0.00060413 68.525 2 3.3752 2.8367 2.368 2 Median NaN NaN NaN 0 0 Median 3.3752 2.8367 2.368 2 0 Median 10696000 2423600 8272800 0 0 0 10696000 2423600 8272800 4755 1569 4878 12511;12512 19534;19535;19536;19537 19534 4 GEALSALDSK VQRIMVANIEEVLQRGEALSALDSKANNLS EVLQRGEALSALDSKANNLSSLSKKYRQDA R G E S K A 2 0 0 1 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 0 0 0 10 0 989.50294 O75396 O75396 160 169 SEC22B Vesicle-trafficking protein SEC22b yes yes 2 0.0044399 72.643 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47909000 0 47909000 47909000 0 47909000 0 0 0 4756 1403 4879 12513;12514;12515 19538;19539;19540 19538 3 GEASETLQSPGYDPSRPESFFQQSFQR TPGWHQLQPRRVSFRGEASETLQSPGYDPS DPSRPESFFQQSFQRLSRLGHGSYGEVFKV R G E Q R L 1 2 0 1 0 4 3 2 0 0 1 0 0 3 3 5 1 0 1 0 0 0 27 1 3074.4006 A6NHV6;Q0IJ49;B4DZM6;Q99640;I3L136;I3L1H7;I3L4K3;I3L3P0 A6NHV6 77 103 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase yes no 3 0.059309 12.346 1 1.5075 1.3624 NaN 1 Median NaN NaN NaN 0 0 Median 1.5075 1.3624 NaN 1 0 Median 2938100 899740 2038300 0 0 0 2938100 899740 2038300 4757 685 4880 12516 19541 19541 1 GEATVSFDDPPSAK PMINLYTDKDTGKPKGEATVSFDDPPSAKA KGEATVSFDDPPSAKAAIDWFDGKEFHGNI K G E A K A 2 0 0 2 0 0 1 1 0 0 0 1 0 1 2 2 1 0 0 1 0 0 14 0 1419.6518 B4E312;A0A075B7D9;Q92804;Q70T18;Q59H57;B4DR70;A8K4H1;Q8TBR3;Q6IBQ5;H3BPE7;Q13344;P35637 B4E312 87 100 TAF15;FUS TATA-binding protein-associated factor 2N;RNA-binding protein FUS no no 2 1.6402E-06 107.85 2 2 1.5676 1.4879 36.945 4 Median 1.8873 2.0945 10.21 2 0 Median 1.3797 1.1143 2.7463 2 0 Median 129650000 43965000 85686000 116370000 38047000 78324000 13280000 5917900 7362000 4758 399;734 4881 12517;12518;12519;12520 19542;19543;19544;19545;19546;19547 19542 6 GEAVCPTCNVVTR PGGPEEQWQRAIHERGEAVCPTCNVVTRKT ERGEAVCPTCNVVTRKTLVGLKKHMEVCQK R G E T R K 1 1 1 0 2 0 1 1 0 0 0 0 0 0 1 0 2 0 0 3 0 0 13 0 1461.6704 Q96KM6 Q96KM6 508 520 ZNF512B Zinc finger protein 512B yes yes 2 0.029554 42.001 2 1.866 1.6066 0.99443 2 Median NaN NaN NaN 0 0 Median 1.866 1.6066 0.99443 2 0 Median 5412200 2181100 3231100 0 0 0 5412200 2181100 3231100 4759 1976 4882 12521;12522 19548;19549 19549 2 GEAVLRPGLDAEPELSPEEQR LGPEAAPSGEGAGSKGEAVLRPGLDAEPEL PGLDAEPELSPEEQRVLERKLKKERKKEER K G E Q R V 2 2 0 1 0 1 5 2 0 0 3 0 0 0 3 1 0 0 0 1 0 0 21 1 2291.1394 C9JQV0;Q9BRJ6;A0A024R836 C9JQV0 44 64 C7orf50;MGC11257 Uncharacterized protein C7orf50 yes no 3 3.2774E-05 41.41 1 2 0.82144 0.45869 40.263 3 Plateau 0.83266 0.9202 NaN 1 0 Median 0.51323 0.45816 0.16396 2 0 Median 28575000 16289000 12286000 22413000 12428000 9984400 6162700 3861200 2301500 4760 1141 4883 12523;12524;12525 19550;19551;19552;19553;19554;19555 19550 6 GEDEEENNLEVR PELEARLAHLGVQVKGEDEEENNLEVRETK QVKGEDEEENNLEVRETKIKGKSGRFFTVK K G E V R E 0 1 2 1 0 0 5 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1431.6114 Q96HX3;Q6IBR0;Q53EP4;P04843;B4DL99;F8WF32 Q96HX3 51 62 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 8.6603E-17 130.94 4 2 0.98644 0.84249 23.967 3 Median 1.2559 1.2524 NaN 1 0 Median 0.9801 0.82786 2.4777 2 0 Median 29241000 10656000 18585000 23043000 7312000 15731000 6197800 3344200 2853700 4761 1444 4884 12526;12527;12528;12529;12530;12531 19556;19557;19558;19559;19560;19561 19557 6 GEDEEMADPMEDVIIR EEADGNKMEEEEGAKGEDEEMADPMEDVII EDEEMADPMEDVIIRNKKHQKLKHQKEAEE K G E I R N 1 1 0 3 0 0 4 1 0 2 0 0 2 0 1 0 0 0 0 1 0 0 16 0 1847.7917 B3KMR5;Q5JTH9;B3KY97;B3KPQ2 B3KMR5 1173 1188 RRP12 RRP12-like protein yes no 2 0.00081103 57.019 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4762 907 4885 12532 19562 19562 730;731 1 GEDLTEEEDGGIIR PNATLVFEVELFEFKGEDLTEEEDGGIIRR KGEDLTEEEDGGIIRRIQTRGEGYAKPNEG K G E I R R 0 1 0 2 0 0 4 3 0 2 1 0 0 0 0 0 1 0 0 0 0 0 14 0 1531.7002 B2R9U2;Q02790 B2R9U2 139 152 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes no 2 5.1424E-06 94.465 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4831600 0 4831600 4831600 0 4831600 0 0 0 4763 868 4886 12533 19563 19563 1 GEDLTSEHPLLEQVELPAVASVSASVIK PPPPTLSPAAITVGRGEDLTSEHPLLEQVE VELPAVASVSASVIKSPSDPSHVSVPPPPL R G E I K S 3 0 0 1 0 1 4 1 1 1 4 1 0 0 2 4 1 0 0 4 0 0 28 0 2917.5284 A5YM43;Q8NDX5;E7EX82;B4E2T1;H7C4H9 A5YM43 625 652 PHC3 Polyhomeotic-like protein 3 yes no 3 0.00056991 34.781 2 0.92649 0.92513 17.754 2 Median 0.92649 0.92513 17.754 2 0 Median NaN NaN NaN 0 0 Median 17787000 6343100 11444000 17787000 6343100 11444000 0 0 0 4764 677 4887 12534;12535 19564;19565 19565 1 GEDSVPDTVHHVVVPVNPK LSEKIMHFPTWVDLKGEDSVPDTVHHVVVP VPDTVHHVVVPVNPKTDRLWERLGKSHIRT K G E P K T 0 0 1 2 0 0 1 1 2 0 0 1 0 0 3 1 1 0 0 6 0 0 19 0 2024.0327 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 352 370 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 1.9603E-12 103.5 1 2 1.5283 1.3557 9.802 3 Median 1.2814 1.4365 NaN 1 0 Median 1.5863 1.2683 9.4239 2 0 Median 90014000 40144000 49870000 65134000 29770000 35364000 24879000 10374000 14505000 4765 452 4888 12536;12537;12538 19566;19567;19568;19569 19567 4 GEEEDPEVNVEMSLQDEIQR KMKKARKKAKLHSSKGEEEDPEVNVEMSLQ PEVNVEMSLQDEIQRVTNIKTSAKIKSFDL K G E Q R V 0 1 1 2 0 2 6 1 0 1 1 0 1 0 1 1 0 0 0 2 0 0 20 0 2345.0329 Q5TDG3;Q9UNX4;B3KMW5 Q5TDG3 336 355 WDR3 WD repeat-containing protein 3 yes no 2 1.1857E-31 146.96 4 1.2193 1.2648 2.9652 4 Median 1.2193 1.2648 2.9652 4 0 Median NaN NaN NaN 0 0 Median 99132000 41475000 57657000 99132000 41475000 57657000 0 0 0 4766 1827 4889 12539;12540;12541;12542 19570;19571;19572;19573;19574;19575;19576 19572 1683 7 GEEILSGAQR PRNPKQSNSYDMFMRGEEILSGAQRIHDPQ DMFMRGEEILSGAQRIHDPQLLTERALHHG R G E Q R I 1 1 0 0 0 1 2 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1058.5356 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 389 398 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0083024 56.258 1 1.0674 1.1116 NaN 1 Median 1.0674 1.1116 NaN 1 0 Median NaN NaN NaN 0 0 Median 13419000 6113800 7305200 13419000 6113800 7305200 0 0 0 4767 610 4890 12543 19577;19578 19577 2 GEELGPGNVQK VVHGKVLQHYQESDKGEELGPGNVQKEVSS ESDKGEELGPGNVQKEVSSSFDHVIKETTR K G E Q K E 0 0 1 0 0 1 2 3 0 0 1 1 0 0 1 0 0 0 0 1 0 0 11 0 1126.5619 Q9Y6C9;Q53G34 Q9Y6C9 101 111 MTCH2 Mitochondrial carrier homolog 2 yes no 2 0.00097478 86.67 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5510600 0 5510600 5510600 0 5510600 0 0 0 4768 2152 4891 12544 19579 19579 1 GEELLSPLNLEQAAYAR STLREALTHRKIIAKGEELLSPLNLEQAAY ELLSPLNLEQAAYARDALAKAVYSRTFTWL K G E A R D 3 1 1 0 0 1 3 1 0 0 4 0 0 0 1 1 0 0 1 0 0 0 17 0 1872.9581 F5H6E2;B7Z3E5;O00159;B7Z9C0;D3DTH7 F5H6E2 338 354 MYO1C Unconventional myosin-Ic no no 2 1.701E-12 114.72 2 1.3102 1.3512 NaN 1 Median 1.3102 1.3512 NaN 1 0 Median NaN NaN NaN 0 0 Median 41160000 10747000 30413000 41160000 10747000 30413000 0 0 0 4769 1088;1189 4892 12545;12546 19580;19581;19582 19580 3 GEENLMDAQVK TVLIKTAEELMNFSKGEENLMDAQVKAIAD NFSKGEENLMDAQVKAIADTGANVVVTGGK K G E V K A 1 0 1 1 0 1 2 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 11 0 1232.5707 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 220 230 CCT8 T-complex protein 1 subunit theta yes no 2 0.00022547 88.495 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12366000 0 12366000 12366000 0 12366000 0 0 0 4770 1592 4893 12547;12548 19583;19584 19583 1373 2 GEEPDIAVPK AAQVTFRKTLEKEAKGEEPDIAVPKFKQRK EKEAKGEEPDIAVPKFKQRKGESDGAYIHR K G E P K F 1 0 0 1 0 0 2 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 10 0 1053.5342 H6QX63;Q6PK04;I3L0U5 H6QX63 120 129 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 0.0022794 69.812 2 1 0.85871 0.90042 15.837 3 Plateau 0.89282 0.89883 6.1516 2 0 Median 0.85871 0.69045 NaN 1 0 Median 59093000 33661000 25431000 54850000 31426000 23424000 4242600 2235500 2007100 4771 1307 4894 12549;12550;12551 19585;19586;19587;19588;19589 19587 5 GEETPVIVGSALCALEGR VELEIRELLTEFGYKGEETPVIVGSALCAL TPVIVGSALCALEGRDPELGLKSVQKLLDA K G E G R D 2 1 0 0 1 0 3 3 0 1 2 0 0 0 1 1 1 0 0 2 0 0 18 0 1856.9302 P49411 P49411 210 227 TUFM Elongation factor Tu, mitochondrial yes yes 2 1.2013E-22 134.68 2 1 1.7827 1.9487 41.611 3 Median 1.8467 1.9527 0.29155 2 0 Median 1.1142 0.94981 NaN 1 0 Median 77003000 29164000 47840000 71441000 26534000 44907000 5562700 2629900 2932800 4772 1580 4895 12552;12553;12554 19590;19591;19592;19593;19594;19595 19591 6 GEETPVIVGSALCALEGRDPELGLK VELEIRELLTEFGYKGEETPVIVGSALCAL ALCALEGRDPELGLKSVQKLLDAVDTYIPV K G E L K S 2 1 0 1 1 0 4 4 0 1 4 1 0 0 2 1 1 0 0 2 0 0 25 1 2609.3371 P49411 P49411 210 234 TUFM Elongation factor Tu, mitochondrial yes yes 3 3.8699E-09 51.398 1 1.9047 2.1772 NaN 1 Median 1.9047 2.1772 NaN 1 0 Median NaN NaN NaN 0 0 Median 21606000 7032600 14573000 21606000 7032600 14573000 0 0 0 4773 1580 4896 12555 19596;19597;19598 19596 3 GEETVLGGGTR KRQQQEEEDLNLEDRGEETVLGGGTREAES LEDRGEETVLGGGTREAESRACSDGRSRKS R G E T R E 0 1 0 0 0 0 2 4 0 0 1 0 0 0 0 0 2 0 0 1 0 0 11 0 1074.5306 Q5T3I0;A8KAG1 Q5T3I0 353 363 GPATCH4 G patch domain-containing protein 4 yes no 2 5.8948E-05 98.048 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9303100 0 9303100 9303100 0 9303100 0 0 0 4774 1820 4897 12556 19599 19599 1 GEFGGFGSVTGK NDDAQFDASHCDSDKGEFGGFGSVTGKIEC SDKGEFGGFGSVTGKIECEIKINHEGEVNR K G E G K I 0 0 0 0 0 0 1 5 0 0 0 1 0 2 0 1 1 0 0 1 0 0 12 0 1141.5404 Q6FHQ0;Q16576;A8K6A2;Q5JP01 Q6FHQ0 102 113 RBBP7 Histone-binding protein RBBP7 yes no 2 0.00019656 91.549 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118150000 118150000 0 114420000 114420000 0 3736500 3736500 0 4775 1771 4898 12557;12558;12559;12560;12561 19600;19601;19602;19603;19604 19600 5 GEFSDFHGPPK WELEGGNDPMSKKRRGEFSDFHGPPKKIIK KKRRGEFSDFHGPPKKIIKVQKDESSTGSL R G E P K K 0 0 0 1 0 0 1 2 1 0 0 1 0 2 2 1 0 0 0 0 0 0 11 0 1216.5513 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50;F5GWN9;A0A0A0MSJ1 A0A024R250 214 224 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.00076687 72.643 1 1.1278 1.164 NaN 1 Median 1.1278 1.164 NaN 1 0 Median NaN NaN NaN 0 0 Median 29029000 13843000 15186000 29029000 13843000 15186000 0 0 0 4776 104 4899 12562 19605;19606 19605 2 GEFTIETEGK DECYITEMEMLLNEKGEFTIETEGKTFQLT LLNEKGEFTIETEGKTFQLTKDMINVKRFQ K G E G K T 0 0 0 0 0 0 3 2 0 1 0 1 0 1 0 0 2 0 0 0 0 0 10 0 1109.5241 A0A090N8G0;P41250;H7C443 A0A090N8G0 484 493 GARS Glycine--tRNA ligase yes no 2 1.0717E-05 97.635 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4777 457 4900 12563 19607 19607 1 GEFVVSLDDGWIR LVLFGGGQVNVQLQRGEFVVSLDDGWIRFV QRGEFVVSLDDGWIRFVAASHQVAELVKEL R G E I R F 0 1 0 2 0 0 1 2 0 1 1 0 0 1 0 1 0 1 0 2 0 0 13 0 1491.7358 Q6P158;Q59G60;H7C109;Q8N4U2 Q6P158 1320 1332 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2 0.0030136 65.5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4778 1850 4901 12564 19608 19608 1 GEGAGPPPPLPPAQPGAEGGGDR ______________________________ PLPPAQPGAEGGGDRGLGDRPAPKDKWSNF K G E D R G 3 1 0 1 0 1 2 7 0 0 1 0 0 0 7 0 0 0 0 0 0 0 23 0 2079.9974 Q9NVI7;Q96T67;Q5T9A4 Q9NVI7 13 35 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B yes no 2 9.4612E-05 46.926 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6443200 0 6443200 6443200 0 6443200 0 0 0 4779 2074 4902 12565 19609 19609 1 GEGDAPFSEPGTTSTQRPSSPETATK TALAGRSPSPASGRRGEGDAPFSEPGTTST TTSTQRPSSPETATKQPSSPYEDKDKDKKE R G E T K Q 2 1 0 1 0 1 3 3 0 0 0 1 0 1 4 4 5 0 0 0 0 0 26 1 2634.2045 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8;I3L1I8;A0A087X1W1 A0A140VK53 304 329 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 3 5.8745E-06 37.526 1 3.1933 3.5497 NaN 1 Median 3.1933 3.5497 NaN 1 0 Median NaN NaN NaN 0 0 Median 10517000 2293000 8223800 10517000 2293000 8223800 0 0 0 4780 619 4903 12566 19610;19611 19610 2 GEGEDEVEEESTALQK AKVAEIRDQKADKKRGEGEDEVEEESTALQ EGEDEVEEESTALQKTDKKEILKKSEKDTN R G E Q K T 1 0 0 1 0 1 6 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 16 0 1748.7588 Q96T23;H0YCN2;H0YEX0 Q96T23 801 816 RSF1 Remodeling and spacing factor 1 yes no 2 1.787E-18 128.85 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4044700 4044700 0 4044700 4044700 0 0 0 0 4781 1991 4904 12567;12568 19612;19613 19612 2 GEGGILINSQGER TGIYGAGCLITEGCRGEGGILINSQGERFM CRGEGGILINSQGERFMERYAPVAKDLASR R G E E R F 0 1 1 0 0 1 2 4 0 2 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1328.6684 D6RFM5;A0A024QZ30;B4DYN5;P31040;A0A087X1I3;Q0QF12;B3KT34;B7Z6J5 D6RFM5 313 325 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 9.961E-05 92.611 1 0.45619 0.47381 NaN 1 Median 0.45619 0.47381 NaN 1 0 Median NaN NaN NaN 0 0 Median 20816000 14715000 6101000 20816000 14715000 6101000 0 0 0 4782 10 4905 12569 19614;19615;19616;19617 19616 4 GEGQLGPAER LKQFAEMYVAKFAAKGEGQLGPAERAKKVE KFAAKGEGQLGPAERAKKVEDMMKKLWGDR K G E E R A 1 1 0 0 0 1 2 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1012.4938 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 240 249 EEF2 Elongation factor 2 yes no 2 1.4773E-05 101.65 1 3.1015 3.4346 NaN 1 Median 3.1015 3.4346 NaN 1 0 Median NaN NaN NaN 0 0 Median 62648000 14447000 48201000 62648000 14447000 48201000 0 0 0 4783 1478 4906 12570 19618;19619 19618 2 GEGTEQEPSTTPEADDDGRR TVIAPVRKEEEDNPKGEGTEQEPSTTPEAD QEPSTTPEADDDGRRHGFLILSREDSTMIL K G E R R H 1 2 0 3 0 1 4 3 0 0 0 0 0 0 2 1 3 0 0 0 0 0 20 1 2145.9047 D3DWL9;Q10570 D3DWL9 474 493 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 3 0.0038571 36.637 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6884200 0 6884200 6884200 0 6884200 0 0 0 4784 1198 4907 12571;12572 19620;19621 19620 2 GEHPGLSIGDVAK SAFFLFCSEYRPKIKGEHPGLSIGDVAKKL IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ K G E A K K 1 0 0 1 0 0 1 3 1 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1278.6568 Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;B2RPK0;P09429;B3KQ05 Q5T7C4 115 127 HMGB1;HMGB1P1 Putative high mobility group protein B1-like 1;High mobility group protein B1 yes no 2 0.00013042 90.05 2 0.57706 0.60265 4.9895 2 Median 0.57706 0.60265 4.9895 2 0 Median NaN NaN NaN 0 0 Median 71165000 44571000 26594000 71165000 44571000 26594000 0 0 0 4785 392 4908 12573;12574 19622;19623 19622 2 GEIDAHEDSFK VAGAEALLDRHQEHKGEIDAHEDSFKSADE QEHKGEIDAHEDSFKSADESGQALLAAGHY K G E F K S 1 0 0 2 0 0 2 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1246.5466 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 408 418 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 4.2578E-06 111.06 2 1 1.5729 1.6455 8.2258 2 Median 1.5729 1.6455 8.2258 2 0 Median NaN NaN NaN 0 0 Median 51959000 19796000 32163000 49551000 19796000 29755000 2407900 0 2407900 4786 523 4909 12575;12576;12577 19624;19625;19626;19627;19628 19626 5 GEIEVVTSSLPELYVEK NESKLVQEALEAVPRGEIEVVTSSLPELYV IEVVTSSLPELYVEKVLEFLASSFEVSRHL R G E E K V 0 0 0 0 0 0 4 1 0 1 2 1 0 0 1 2 1 0 1 3 0 0 17 0 1890.9826 Q15269;A0A0B4J2E5 Q15269 785 801 PWP2 Periodic tryptophan protein 2 homolog yes no 2 3.6053E-09 106.32 2 1.2498 1.0647 4.3319 2 Median NaN NaN NaN 0 0 Median 1.2498 1.0647 4.3319 2 0 Median 137360000 63203000 74161000 0 0 0 137360000 63203000 74161000 4787 1756 4910 12578;12579 19629;19630;19631 19629 3 GEILIGGQSVTMGYYK WEEGGYFNTDKPHPRGEILIGGQSVTMGYY EILIGGQSVTMGYYKNEAKTKADFFEDENG R G E Y K N 0 0 0 0 0 1 1 4 0 2 1 1 1 0 0 1 1 0 2 1 0 0 16 0 1714.86 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6 B3KN05 515 530 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.00091757 58.172 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8157300 0 8157300 8157300 0 8157300 0 0 0 4788 150 4911 12580 19632 19632 128 1 GEIVVIGATNR IVSTLLALMDGLDSRGEIVVIGATNRLDSI LDSRGEIVVIGATNRLDSIDPALRRPGRFD R G E N R L 1 1 1 0 0 0 1 2 0 2 0 0 0 0 0 0 1 0 0 2 0 0 11 0 1127.6299 A0A024R9G7;Q6PL18;Q9ULI0 A0A024R9G7 566 576 ATAD2;ATAD2B ATPase family AAA domain-containing protein 2;ATPase family AAA domain-containing protein 2B no no 2 0.027542 50.108 1 1 1.8104 1.572 NaN 1 Median NaN NaN NaN 0 0 Median 1.8104 1.572 NaN 1 0 Median 2201700 666310 1535400 0 0 0 2201700 666310 1535400 4789 278;2108 4912 12581;12582 19633;19634 19633 2 GELANEVK KANLEKAKQTLENERGELANEVKVLLQGKG QTLENERGELANEVKVLLQGKGDSEHKRKK R G E V K V 1 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 858.4447 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1227 1234 MYH9 Myosin-9 yes no 2 0.027969 60.508 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11954000 0 11954000 11954000 0 11954000 0 0 0 4790 81 4913 12583 19635 19635 1 GELAWIIYK SMDVENPDYSEEILKGELAWIIYKNSVSII SEEILKGELAWIIYKNSVSIIKGAEFHVSL K G E Y K N 1 0 0 0 0 0 1 1 0 2 1 1 0 0 0 0 0 1 1 0 0 0 9 0 1091.6015 B3KQ21;Q9NYH9;B3KX32;B4DSL9;B7Z9G4 B3KQ21 219 227 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.0021719 75.854 1 2 1.4113 1.1347 20.847 3 Median 0.85618 0.84218 NaN 1 0 Median 1.5019 1.1949 7.3065 2 0 Median 13777000 6950600 6826300 8660800 4863100 3797700 5116200 2087500 3028600 4791 925 4914 12584;12585;12586 19636;19637;19638;19639;19640 19637 5 GELDDNGDLKK QEEEEEQRWLDALEKGELDDNGDLKKEINE ALEKGELDDNGDLKKEINERLLTARQRALL K G E K K E 0 0 1 3 0 0 1 2 0 0 2 2 0 0 0 0 0 0 0 0 0 0 11 1 1202.5779 J3KQ70;B4DJ31;Q9C086;B8ZZ93;B8ZZH7;F8WCL7;B4DJ22;C9JKY0 J3KQ70 159 169 INO80B-WBP1;INO80B INO80 complex subunit B yes no 2 0.035863 45.368 1 0.80402 0.90665 NaN 1 Median 0.80402 0.90665 NaN 1 0 Median NaN NaN NaN 0 0 Median 6844000 4347700 2496300 6844000 4347700 2496300 0 0 0 4792 985 4915 12587 19641 19641 0 GENLENIEPLQVSFAVLSSPNK SPVPEPLPQPDFDDKGENLENIEPLQVSFA EPLQVSFAVLSSPNKSSISETLSGTDTFSS K G E N K S 1 0 3 0 0 1 3 1 0 1 3 1 0 1 2 3 0 0 0 2 0 0 22 0 2384.2224 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 437 458 CDCA2 Cell division cycle-associated protein 2 yes no 2 3.3521E-11 90.707 2 0.5934 0.59848 14.929 2 Median 0.5934 0.59848 14.929 2 0 Median NaN NaN NaN 0 0 Median 14622000 8851500 5770500 14622000 8851500 5770500 0 0 0 4793 1233 4916 12588;12589 19642;19643;19644 19643 3 GENLVSMTVEGPPPK PEREEKRVLGLVLLRGENLVSMTVEGPPPK GENLVSMTVEGPPPKDTGIARVPLAGAAGG R G E P K D 0 0 1 0 0 0 2 2 0 0 1 1 1 0 3 1 1 0 0 2 0 0 15 0 1553.7759 J3QLE5;Q66K91;Q5XPV6;B4DVS0;X5DP00;Q53HE7;Q9UIS4;Q15182;P63162;P14678;Q6LBS1 J3QLE5 74 88 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated protein;Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B yes no 2 3.2962E-06 95.401 2 1.5963 1.6486 2.7272 2 Median 1.5963 1.6486 2.7272 2 0 Median NaN NaN NaN 0 0 Median 48231000 16859000 31372000 48231000 16859000 31372000 0 0 0 4794 1041 4917 12590;12591 19645;19646;19647;19648 19647 814 4 GENPFEIQDHSQDQQIEGDEEDEEK LNNPIVKARYERFVKGENPFEIQDHSQDQQ SQDQQIEGDEEDEEKIDEPIEEEEDEDEEE K G E E K I 0 0 1 4 0 4 7 2 1 2 0 1 0 1 1 1 0 0 0 0 0 0 25 0 2944.2119 Q5BKZ1;A0A0A0MRN4 Q5BKZ1 468 492 ZNF326 DBIRD complex subunit ZNF326 yes no 3 2.1355E-06 45.611 2 1.5456 1.6542 7.29 2 Median 1.5456 1.6542 7.29 2 0 Median NaN NaN NaN 0 0 Median 37734000 16246000 21488000 37734000 16246000 21488000 0 0 0 4795 1804 4918 12592;12593 19649;19650;19651;19652;19653 19651 5 GEPETFLPLDYLEVKPTDEK EKTGRDCIQYIKEQRGEPETFLPLDYLEVK FLPLDYLEVKPTDEKLRELKGAKLVIDVIR R G E E K L 0 0 0 2 0 0 4 1 0 0 3 2 0 1 3 0 2 0 1 1 0 0 20 1 2319.1522 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709 Q14683 565 584 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 2.2338E-07 83.063 2 2 1.0275 1.0162 12.982 4 Median 0.7802 0.91196 2.5582 2 0 Median 1.3359 1.1376 3.2096 2 0 Median 90359000 49101000 41258000 68464000 39416000 29047000 21896000 9684700 12211000 4796 1739 4919 12594;12595;12596;12597 19654;19655;19656;19657;19658;19659;19660 19659 7 GEPGGILCFLPGWQEIK DLDLVTDLVLHIDARGEPGGILCFLPGWQE PGGILCFLPGWQEIKGVQQRLQEALGMHES R G E I K G 0 0 0 0 1 1 2 4 0 2 2 1 0 1 2 0 0 1 0 0 0 0 17 0 1899.9553 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 638 654 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0013371 51.218 1 1.1321 1.1416 NaN 1 Median 1.1321 1.1416 NaN 1 0 Median NaN NaN NaN 0 0 Median 7724700 2869700 4855000 7724700 2869700 4855000 0 0 0 4797 122 4920 12598 19661;19662 19662 2 GEQYVVIIQNK KNIKQNAHIVEWSPRGEQYVVIIQNKIDIY WSPRGEQYVVIIQNKIDIYQLDTASISGTI R G E N K I 0 0 1 0 0 2 1 1 0 2 0 1 0 0 0 0 0 0 1 2 0 0 11 0 1289.698 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 176 186 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 1.9914E-08 122.26 1 1.2736 1.0521 NaN 1 Median NaN NaN NaN 0 0 Median 1.2736 1.0521 NaN 1 0 Median 31581000 13812000 17769000 0 0 0 31581000 13812000 17769000 4798 580 4921 12599 19663 19663 1 GESDDFHMDFDSAVAPR FEKIVSKAVTSKKSKGESDDFHMDFDSAVA SDDFHMDFDSAVAPRAKSVRAKKPIKYLEE K G E P R A 2 1 0 4 0 0 1 1 1 0 0 0 1 2 1 2 0 0 0 1 0 0 17 0 1894.7792 P11388 P11388 1493 1509 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.1934E-13 119.92 4 6 1.0173 1.036 28.599 10 Median 0.9709 1.141 32.057 4 0 Linear 1.4983 1.2899 22.411 6 0 Median 842210000 435270000 406940000 780000000 407840000 372160000 62210000 27434000 34776000 4799 1471 4922;4923 12600;12601;12602;12603;12604;12605;12606;12607;12608;12609 19664;19665;19666;19667;19668;19669;19670;19671;19672;19673;19674;19675;19676;19677;19678;19679;19680;19681;19682 19670 1199 18 GESDGAYIHR GEEPDIAVPKFKQRKGESDGAYIHRMQQEA FKQRKGESDGAYIHRMQQEAQHVLFLSKNQ K G E H R M 1 1 0 1 0 0 1 2 1 1 0 0 0 0 0 1 0 0 1 0 0 0 10 0 1103.4996 H6QX63;Q6PK04;I3L0U5 H6QX63 135 144 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 2.8613E-05 91.853 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4800 1307 4924 12610;12611 19683;19684 19683 2 GESEFSFEELR DVEQVVMYCKEKLIRGESEFSFEELRAQKY KLIRGESEFSFEELRAQKYNQRRKHEQWVN R G E L R A 0 1 0 0 0 0 4 1 0 0 1 0 0 2 0 2 0 0 0 0 0 0 11 0 1328.5885 A0JLU2;B4DYG2;O43683;A8K5A6 A0JLU2 245 255 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 0.007905 54.094 1 2 1.1043 0.97657 4.3249 2 Median NaN NaN NaN 0 0 Median 1.1043 0.97657 4.3249 2 0 Median 8653200 6242100 2411100 4435000 4435000 0 4218200 1807000 2411100 4801 641 4925 12612;12613;12614 19685;19686;19687;19688 19687 4 GESFYQDR LNKIYDALDVSLIERGESFYQDRMNDIVKE DVSLIERGESFYQDRMNDIVKEFEDRGFVQ R G E D R M 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 8 0 1000.425 P54136;B4DXW6 P54136 334 341 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.0065453 86.794 2 1.7346 1.7269 22.125 2 Median 1.7346 1.7269 22.125 2 0 Median NaN NaN NaN 0 0 Median 31324000 11554000 19769000 31324000 11554000 19769000 0 0 0 4802 1609 4926 12615;12616 19689;19690;19691 19690 3 GESGQSWPR KHKRTDRSILCCLRKGESGQSWPRLTKERA LCCLRKGESGQSWPRLTKERAKLNWLSVDF K G E P R L 0 1 0 0 0 1 1 2 0 0 0 0 0 0 1 2 0 1 0 0 0 0 9 0 1002.4519 A0A024RB32;A0A087WYT3;B3KUY2;Q15185;B4DDC6 A0A024RB32 80 88 PTGES3 Prostaglandin E synthase 3 yes no 2 0.00017584 93.374 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60441000 0 60441000 59532000 0 59532000 908420 0 908420 4803 323 4927 12617;12618;12619 19692;19693;19694 19692 3 GESSLTALER SQFKGYRRRSSLNGKGESSLTALERIEHNG SLNGKGESSLTALERIEHNGERKQ______ K G E E R I 1 1 0 0 0 0 2 1 0 0 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1061.5353 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 990 999 CDCA2 Cell division cycle-associated protein 2 yes no 2 0.00060252 84.213 3 2 1.4382 1.237 32.353 3 Median 0.6832 0.71733 NaN 1 0 Median 1.4862 1.2555 2.1027 2 0 Median 54367000 40548000 13819000 41735000 35450000 6284700 12632000 5097300 7534200 4804 1233 4928 12620;12621;12622;12623;12624 19695;19696;19697;19698;19699;19700;19701 19695 7 GETEQDLEADFPSDSFDPLNK NAVQEADSELKQFSKGETEQDLEADFPSDS LEADFPSDSFDPLNKGQGIQARSRTRRRHR K G E N K G 1 0 1 4 0 1 3 1 0 0 2 1 0 2 2 2 1 0 0 0 0 0 21 0 2353.0234 Q5VZL5;H7C1I7 Q5VZL5 1132 1152 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.011169 23.842 1 1.8746 1.4808 NaN 1 Median NaN NaN NaN 0 0 Median 1.8746 1.4808 NaN 1 0 Median 4116700 1260500 2856200 0 0 0 4116700 1260500 2856200 4805 1835 4929 12625 19702 19702 1 GETLGLIGFGR VEQIREVASGAARIRGETLGLIGFGRTGQA ARIRGETLGLIGFGRTGQAVAVRAKAFGFS R G E G R T 0 1 0 0 0 0 1 4 0 1 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1118.6084 Q5SQP8;P56545 Q5SQP8 248 258 CTBP2 C-terminal-binding protein 2 yes no 2 0.0022857 76.064 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2968600 0 2968600 2968600 0 2968600 0 0 0 4806 1620 4930 12626 19703 19703 1 GETVNDCHAEIISR GTGNRCVKGDSLSLKGETVNDCHAEIISRR KGETVNDCHAEIISRRGFIRFLYSELMKYN K G E S R R 1 1 1 1 1 0 2 1 1 2 0 0 0 0 0 1 1 0 0 1 0 0 14 0 1599.7311 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 903 916 ADAR Double-stranded RNA-specific adenosine deaminase yes no 3 2.5279E-05 91.441 1 1 1.4067 1.3261 45.336 2 Median 1.7422 1.8273 NaN 1 0 Median 1.1358 0.96241 NaN 1 0 Median 13969000 5782400 8186100 11037000 4649900 6387400 2931300 1132600 1798800 4807 5 4931 12627;12628 19704;19705 19704 2 GEVAYIDGQVLVPPGYGQDVR EGQKVKGTVRRVVLRGEVAYIDGQVLVPPG DGQVLVPPGYGQDVRKWPQGAVPQLPPSAP R G E V R K 1 1 0 2 0 2 1 4 0 1 1 0 0 0 2 0 0 0 2 4 0 0 21 0 2231.1222 Q53SY7;F8VPD4;P27708;H7BZB3 Q53SY7 1716 1736 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0061558 24.558 1 0.90546 0.90641 NaN 1 Median 0.90546 0.90641 NaN 1 0 Median NaN NaN NaN 0 0 Median 9105400 4933400 4172000 9105400 4933400 4172000 0 0 0 4808 1259 4932 12629 19706;19707 19706 2 GEVDEEDAALYR EILKVLFNITLDSIKGEVDEEDAALYRHLG SIKGEVDEEDAALYRHLGTLLRHCVMIATA K G E Y R H 2 1 0 2 0 0 3 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 12 0 1365.6048 Q9NPQ8 Q9NPQ8 238 249 RIC8A Synembryn-A yes yes 2 5.7676E-07 103.7 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4809 2058 4933 12630;12631;12632 19708;19709;19710 19710 3 GEVGLLFTNR DEYKDNLHQVSKRLRGEVGLLFTNRTKEEV SKRLRGEVGLLFTNRTKEEVNEWFTKYTEM R G E N R T 0 1 1 0 0 0 1 2 0 0 2 0 0 1 0 0 1 0 0 1 0 0 10 0 1104.5928 A0A024RAE1;Q9UKD2 A0A024RAE1 98 107 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 3.2468E-22 165.26 2 2 0.89945 0.73119 29.34 3 Median 1.022 1.1661 NaN 1 0 Median 0.86304 0.7044 5.2777 2 0 Median 250810000 79401000 171400000 225730000 66584000 159140000 25079000 12817000 12263000 4810 302 4934 12633;12634;12635;12636 19711;19712;19713;19714;19715;19716 19712 6 GEVITTYCPANNEPIAR REENEGVYNGSWGGRGEVITTYCPANNEPI VITTYCPANNEPIARVRQASVADYEETVKK R G E A R V 2 1 2 0 1 0 2 1 0 2 0 0 0 0 2 0 2 0 1 1 0 0 17 0 1903.9098 A0A1B0GTY9;A0A140T9V3;A0A1B0GTG2;A0A1B0GW77;P49419;A0A0J9YWF7;A0A1B0GUA1;A0A1B0GW82;F8WDY6;F8VVF2;H0YHM6 A0A1B0GTY9 63 79 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.0046016 51.135 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6024000 0 6024000 6024000 0 6024000 0 0 0 4811 598 4935 12637;12638 19717;19718;19719 19719 3 GEVLGDVLQLETLK EEHLSQLQDNPPQEKGEVLGDVLQLETLKQ KGEVLGDVLQLETLKQEAATLAANNTQLQA K G E L K Q 0 0 0 1 0 1 2 2 0 0 4 1 0 0 0 0 1 0 0 2 0 0 14 0 1512.8399 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 406 419 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.3189E-21 148.28 2 2 1.1075 1.0497 23.968 4 Median 0.82015 0.8962 1.5631 2 0 Median 1.6276 1.3302 12.692 2 0 Median 145270000 69451000 75815000 87252000 45960000 41292000 58014000 23491000 34523000 4812 186;1747;718 4936 12639;12640;12641;12642 19720;19721;19722;19723;19724;19725;19726;19727 19720 8 GEVRPELGSR LFLSHDDLERLGPGKGEVRPELGSRQDVEA LGPGKGEVRPELGSRQDVEALWENMAVIDC K G E S R Q 0 2 0 0 0 0 2 2 0 0 1 0 0 0 1 1 0 0 0 1 0 0 10 1 1098.5782 Q53SY7;F8VPD4;P27708 Q53SY7 1584 1593 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2;3 0.0075598 59.067 3 0.70548 0.79877 12.52 3 Median 0.70548 0.79877 12.52 3 0 Median NaN NaN NaN 0 0 Median 58182000 32972000 25210000 58182000 32972000 25210000 0 0 0 4813 1259 4937 12643;12644;12645 19728;19729;19730;19731 19730 4 GEVTAADLFNSR ETETQNQGIKVAAIRGEVTAADLFNSRVID AIRGEVTAADLFNSRVIDQKTLHTLRVGRT R G E S R V 2 1 1 1 0 0 1 1 0 0 1 0 0 1 0 1 1 0 0 1 0 0 12 0 1278.6204 A0A075B730;A0A087X1U6;P58107 A0A075B730 1827 1838 EPPK1 Epiplakin no no 2 1.1073E-05 107.55 1 1 2.2676 2.1992 21.272 2 Median 2.3721 2.5561 NaN 1 0 Median 2.1676 1.892 NaN 1 0 Median 27403000 8031700 19371000 25960000 7604800 18355000 1442800 426880 1015900 4814 397;1622 4938 12646;12647 19732;19733 19732 2 GEVYPFGIVGMANK EYQGMIEIVEEGDMKGEVYPFGIVGMANKG KGEVYPFGIVGMANKGDCLQKGESVKFQLC K G E N K G 1 0 1 0 0 0 1 3 0 1 0 1 1 1 1 0 0 0 1 2 0 0 14 0 1480.7384 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93;Q8WU01;Q9UG12 Q9GZV0 598 611 CSDE1;UNR;DKFZp586J0620;DKFZp566C233 Cold shock domain-containing protein E1 yes no 2 0.0005294 68.893 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22109000 0 22109000 22109000 0 22109000 0 0 0 4815 42 4939 12648;12649 19734;19735 19735 23 2 GFAAFLTELAER QKCPQELSRDPSGTKGFAAFLTELAERVPA GTKGFAAFLTELAERVPAILMSSMRILLDH K G F E R V 3 1 0 0 0 0 2 1 0 0 2 0 0 2 0 0 1 0 0 0 0 0 12 0 1323.6823 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 299 310 NCAPD2 Condensin complex subunit 1 yes no 2 1.4464E-05 110.14 2 1.1881 1.3229 1.5251 2 Median 1.1881 1.3229 1.5251 2 0 Median NaN NaN NaN 0 0 Median 100260000 45263000 55000000 100260000 45263000 55000000 0 0 0 4816 908 4940 12650;12651 19736;19737;19738;19739;19740 19740 5 GFAFVEFETK VYISIPHYKSTGDPKGFAFVEFETKEQAAK TGDPKGFAFVEFETKEQAAKAIEFLNNPPE K G F T K E 1 0 0 0 0 0 2 1 0 0 0 1 0 3 0 0 1 0 0 1 0 0 10 0 1173.5706 Q4G0J3;D6RFF0 Q4G0J3 167 176 LARP7 La-related protein 7 yes no 2 0.0040971 73.985 2 2 0.63863 0.51141 17.56 2 Median NaN NaN NaN 0 0 Median 0.63863 0.51141 17.56 2 0 Median 17427000 15858000 1569500 12764000 12764000 0 4663100 3093600 1569500 4817 1779 4941 12652;12653;12654;12655 19741;19742;19743;19744;19745;19746 19742 6 GFAFVEFSHLQDATR REVRLMRNKSSGQSRGFAFVEFSHLQDATR GFAFVEFSHLQDATRWMEANQHSLNILGQK R G F T R W 2 1 0 1 0 1 1 1 1 0 1 0 0 3 0 1 1 0 0 1 0 0 15 0 1723.8318 A0A0S2Z4W4;Q7Z3D7;A0A0A0MR66;P98175;Q6PKH5;A0A0S2Z4X1 A0A0S2Z4W4 172 186 DKFZp686E2459;RBM10 RNA-binding protein 10 yes no 3 0.021063 50.806 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4818 464 4942 12656 19747 19747 1 GFAFVQYVNER IFSKYGKIVGCSVHKGFAFVQYVNERNARA SVHKGFAFVQYVNERNARAAVAGEDGRMIA K G F E R N 1 1 1 0 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 2 0 0 11 0 1328.6513 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V555;G3V575;B4DMJ1;B4DSU6;G3V4M8;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V5X6;G3V3K6;G3V251 G3V4W0 51 61 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 no no 2 7.5763E-24 174.92 3 2 1.0075 1.1604 45.051 5 Median 1.1051 1.2892 6.1189 3 0 Plateau 0.63382 0.55002 5.4608 2 0 Median 1229000000 624510000 604520000 1075800000 530140000 545660000 153240000 94371000 58868000 4819 837;781 4943 12657;12658;12659;12660;12661 19748;19749;19750;19751;19752;19753;19754;19755;19756 19751 9 GFAFVTFDDHDSVDK EVIEIMTDRGSGKKRGFAFVTFDDHDSVDK GFAFVTFDDHDSVDKIVIQKYHTVNGHNCE R G F D K I 1 0 0 4 0 0 0 1 1 0 0 1 0 3 0 1 1 0 0 2 0 0 15 0 1698.7526 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q9BSM5;Q0VAC0;Q6IPF2;F8VZ49;A0A024RC46;A0A024QZ98;Q32P51;F8VTQ5;H0YH80 F8W6I7 147 161 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 0.00041041 62.408 4 2 2.074 2.1992 39.853 5 Median 2.2479 2.2033 5.0918 3 0 Median 1.3743 1.0985 1.7995 2 0 Median 94132000 22845000 71287000 84006000 18408000 65598000 10126000 4437100 5688800 4820 317 4944 12662;12663;12664;12665;12666;12667 19757;19758;19759;19760;19761;19762;19763;19764;19765;19766;19767 19765 11 GFAFVTFDDHDTVDK ETIEVMEDRQSGKKRGFAFVTFDDHDTVDK GFAFVTFDDHDTVDKIVVQKYHTINGHNCE R G F D K I 1 0 0 4 0 0 0 1 1 0 0 1 0 3 0 0 2 0 0 2 0 0 15 0 1712.7682 P51991;B4E3E6;B4DDB6 P51991 168 182 HNRNPA3;HNRPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 2 0.0048644 38.402 1 1.304 1.3064 NaN 1 Median 1.304 1.3064 NaN 1 0 Median NaN NaN NaN 0 0 Median 13898000 5204500 8693900 13898000 5204500 8693900 0 0 0 4821 1598 4945 12668 19768;19769 19768 2 GFAFVTFESPADAK VEVLLMKDRETNKSRGFAFVTFESPADAKD RGFAFVTFESPADAKDAARDMNGKSLDGKA R G F A K D 3 0 0 1 0 0 1 1 0 0 0 1 0 3 1 1 1 0 0 1 0 0 14 0 1485.714 H0Y6E7;H3BT71;P38159;B4E352;Q2VIN3;Q96E39;H3BR27;A0A1B0GUK8;A8K8A6;O75526;Q8N7X1 H0Y6E7 52 65 RBMX;RBMXL1;RBMXL2;RBMXL3 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3 yes no 2 1.798E-37 164.64 2 2 1.0239 0.9952 49.898 4 Median 1.343 1.5353 1.8523 2 0 Median 0.77872 0.64712 1.4124 2 0 Median 435520000 198490000 237030000 347170000 147150000 200030000 88346000 51340000 37006000 4822 1284 4946 12669;12670;12671;12672 19770;19771;19772;19773;19774;19775;19776;19777;19778;19779;19780 19773 11 GFAFVYFENVDDAK ADVSIVYDQQSRRSRGFAFVYFENVDDAKE RGFAFVYFENVDDAKEAKERANGMELDGRR R G F A K E 2 0 1 2 0 0 1 1 0 0 0 1 0 3 0 0 0 0 1 2 0 0 14 0 1620.746 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995;H7BXF3 Q8N1H4 124 137 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2 2.4473E-06 105.46 2 2 1.2064 1.3952 38.037 4 Linear 1.1764 1.3284 5.2118 2 0 Median 0.86471 0.68887 0.79293 2 0 Median 181070000 84077000 96991000 147610000 66493000 81121000 33453000 17583000 15870000 4823 889 4947 12673;12674;12675;12676 19781;19782;19783;19784;19785;19786;19787;19788;19789 19786 9 GFAFVYFER SGVNVVYDQRTGRSRGFAFVYFERIDDSKE RTGRSRGFAFVYFERIDDSKEAMERANGME R G F E R I 1 1 0 0 0 0 1 1 0 0 0 0 0 3 0 0 0 0 1 1 0 0 9 0 1134.5498 Q549U1;Q13595 Q549U1 161 169 HSU53209;TRA2A Transformer-2 protein homolog alpha yes no 2 0.001665 84.498 1 1.1458 1.2055 NaN 1 Median 1.1458 1.2055 NaN 1 0 Median NaN NaN NaN 0 0 Median 23144000 10611000 12533000 23144000 10611000 12533000 0 0 0 4824 1716 4948 12677 19790;19791 19790 2 GFAHGSVYK DMEDAMIVNKASWERGFAHGSVYKSEFIDL KASWERGFAHGSVYKSEFIDLSEKIKQGDS R G F Y K S 1 0 0 0 0 0 0 2 1 0 0 1 0 1 0 1 0 0 1 1 0 0 9 0 964.47667 Q9H6S8;Q6DKI9;Q9BSR4;B7Z1W6;Q9H9Y6;H7C0D9;Q4QRK8 Q9H6S8 126 134 POLR1B DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA2 yes no 2 0.022342 57.047 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4761900 0 4761900 4761900 0 4761900 0 0 0 4825 1085 4949 12678;12679 19792;19793 19792 2 GFAYVQFEDVR VDVYVPLDFYTRRPRGFAYVQFEDVRDAED RRPRGFAYVQFEDVRDAEDALHNLDRKWIC R G F V R D 1 1 0 1 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 2 0 0 11 0 1329.6354 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q8WXF0 Q5JRI1 52 62 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 yes no 2 6.783E-10 127.3 2 1.1524 1.3169 3.6305 2 Median 1.1524 1.3169 3.6305 2 0 Median NaN NaN NaN 0 0 Median 179000000 89777000 89227000 179000000 89777000 89227000 0 0 0 4826 574 4950 12680;12681 19794;19795;19796;19797 19794 4 GFDALQYQEHLDYEIIQSLNPEFNK PSPDNLHTLFEFVFKGFDALQYQEHLDYEI LDYEIIQSLNPEFNKAVIRVNVFREHRQTI K G F N K A 1 0 2 2 0 3 3 1 1 2 3 1 0 2 1 1 0 0 2 0 0 0 25 0 3010.4349 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 329 353 NAT10 N-acetyltransferase 10 no no 3 3.288E-46 147.11 2 0.84312 0.96876 7.3333 2 Median 0.84312 0.96876 7.3333 2 0 Median NaN NaN NaN 0 0 Median 405810000 217210000 188600000 405810000 217210000 188600000 0 0 0 4827 2023;1687 4951 12682;12683 19798;19799;19800;19801 19799 4 GFDILGIK WRMLLCEAVAAVMAKGFDILGIKPVQRM__ VAAVMAKGFDILGIKPVQRM__________ K G F I K P 0 0 0 1 0 0 0 2 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 861.496 P54136;B4DXW6 P54136 648 655 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.027494 60.799 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9144200 2762200 6382000 9144200 2762200 6382000 0 0 0 4828 1609 4952 12684;12685;12686 19802;19803;19804 19803 3 GFDPNQLSVATLLFEGDREK SFLDGLKKFYITKFKGFDPNQLSVATLLFE QLSVATLLFEGDREKVLQHEKQVYDIAAKF K G F E K V 1 1 1 2 0 1 2 2 0 0 3 1 0 2 1 1 1 0 0 1 0 0 20 1 2235.1172 A0A1B0GWA2;B7Z3Q4;O00116;Q53SN7 A0A1B0GWA2 371 390 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 3 0.0015881 31.462 1 2.5507 2.8256 NaN 1 Median 2.5507 2.8256 NaN 1 0 Median NaN NaN NaN 0 0 Median 8453300 2543800 5909500 8453300 2543800 5909500 0 0 0 4829 635 4953 12687 19805 19805 1 GFDQEEVFEK RSVFYRSYKEQESKKGFDQEEVFEKPTRET QESKKGFDQEEVFEKPTRETCQGMRHAIYD K G F E K P 0 0 0 1 0 1 3 1 0 0 0 1 0 2 0 0 0 0 0 1 0 0 10 0 1226.5455 C9J2Y9;B4DHJ3;P30876;B4DR40;C9J4M6;B4DH29 C9J2Y9 815 824 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.0029901 66.568 2 1.271 1.2846 NaN 1 Median 1.271 1.2846 NaN 1 0 Median NaN NaN NaN 0 0 Median 8612300 4022200 4590100 8612300 4022200 4590100 0 0 0 4830 975 4954 12688;12689 19806;19807 19807 2 GFDTSSSSSNSAASSSFK LACESAKPGTKSGFKGFDTSSSSSNSAASS TSSSSSNSAASSSFKFGVSSSSSGPSQTLT K G F F K F 2 0 1 1 0 0 0 1 0 0 0 1 0 2 0 9 1 0 0 0 0 0 18 0 1752.7439 A0A024QZW7;P49790 A0A024QZW7 887 904 NUP153 Nuclear pore complex protein Nup153 yes no 2 1.1548E-07 88.075 2 1.0446 1.0546 NaN 1 Median 1.0446 1.0546 NaN 1 0 Median NaN NaN NaN 0 0 Median 14040000 4658900 9381600 14040000 4658900 9381600 0 0 0 4831 31 4955 12690;12691 19808;19809;19810 19810 3 GFEPTLEALFGK GFASADLFEIGLEGKGFEPTLEALFGKEGF EGKGFEPTLEALFGKEGFFPDSVNKALYWV K G F G K E 1 0 0 0 0 0 2 2 0 0 2 1 0 2 1 0 1 0 0 0 0 0 12 0 1307.6762 CON__ENSEMBL:ENSBTAP00000032840;Q7Z7Q0;A8MUN2;E1A689;C0JYY2;P04114;A8K479 CON__ENSEMBL:ENSBTAP00000032840 693 704 APOB Apolipoprotein B-100;Apolipoprotein B-48 no no 2 2.9742E-13 123.86 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7493100 7493100 0 5158000 5158000 0 2335100 2335100 0 + 4832 1146;1123 4956 12692;12693 19811;19812 19811 2 GFFDPNTEENLTYLQLK EELSEILSDPSDDTKGFFDPNTEENLTYLQ FDPNTEENLTYLQLKERCIKDEETGLCLLP K G F L K E 0 0 2 1 0 1 2 1 0 0 3 1 0 2 1 0 2 0 1 0 0 0 17 0 2027.984 P15924;Q4LE79 P15924 2414 2430 DSP;DSP variant protein Desmoplakin yes no 2 6.7084E-09 96.745 2 1 0.44441 0.44363 NaN 1 Median 0.44441 0.44363 NaN 1 0 Median NaN NaN NaN 0 0 Median 24644000 18488000 6156100 21862000 15706000 6156100 2781700 2781700 0 4833 1486 4957 12694;12695;12696 19813;19814;19815;19816;19817 19813 5 GFFDPNTEENLTYLQLMER EEMNEILTDPSDDTKGFFDPNTEENLTYLQ PNTEENLTYLQLMERCITDPQTGLCLLPLK K G F E R C 0 1 2 1 0 1 3 1 0 0 3 0 1 2 1 0 2 0 1 0 0 0 19 0 2316.0732 Q15149;D3DWL0;Q96IE3 Q15149 4226 4244 PLEC;PLEC1 Plectin yes no 2 1.8926E-05 51.211 2 2.261 2.334 6.8086 2 Median 2.261 2.334 6.8086 2 0 Median NaN NaN NaN 0 0 Median 41580000 12907000 28673000 41580000 12907000 28673000 0 0 0 4834 1754 4958 12697;12698 19818;19819;19820 19820 1613 3 GFFDPNTHENLTYLQLLER EEMNRVLADPSDDTKGFFDPNTHENLTYLQ PNTHENLTYLQLLERCVEDPETGLCLLPLT K G F E R C 0 1 2 1 0 1 2 1 1 0 4 0 0 2 1 0 2 0 1 0 0 0 19 0 2306.1331 A0A075B730;A0A087X1U6;P58107;Q15149;D3DWL0 Q15149 2989 3007 EPPK1;PLEC;PLEC1 Epiplakin;Plectin no no 3 1.1003E-64 152.18 2 2 2.051 1.9778 5.4977 4 Median 1.8479 2.0833 2.1368 2 0 Median 2.2378 1.899 0.53491 2 0 Median 197770000 68613000 129160000 152140000 53914000 98224000 45633000 14699000 30933000 4835 1754;397;1622 4959 12699;12700;12701;12702 19821;19822;19823;19824;19825;19826 19823 6 GFFDPNTHENLTYLQLLQR EEMNRVLADPSDDTKGFFDPNTHENLTYLQ PNTHENLTYLQLLQRATLDPETGLLFLSLS K G F Q R A 0 1 2 1 0 2 1 1 1 0 4 0 0 2 1 0 2 0 1 0 0 0 19 0 2305.1491 A0A075B730;A0A087X1U6;P58107 A0A075B730 5028 5046 EPPK1 Epiplakin no no 3 1.6588E-08 89.468 1 2.7057 2.7201 NaN 1 Median 2.7057 2.7201 NaN 1 0 Median NaN NaN NaN 0 0 Median 19246000 4516100 14730000 19246000 4516100 14730000 0 0 0 4836 397;1622 4960 12703 19827;19828;19829 19827 3 GFFDPNTHENLTYR EEMNRVLADPSDDTKGFFDPNTHENLTYRQ KGFFDPNTHENLTYRQLLERCVEDPETGLR K G F Y R Q 0 1 2 1 0 0 1 1 1 0 1 0 0 2 1 0 2 0 1 0 0 0 14 0 1709.7798 Q15149;D3DWL0 Q15149 3648 3661 PLEC;PLEC1 Plectin yes no 3 0.00049266 52.527 2 1.4977 1.612 13.135 2 Median 1.4977 1.612 13.135 2 0 Median NaN NaN NaN 0 0 Median 82991000 33182000 49809000 82991000 33182000 49809000 0 0 0 4837 1754 4961 12704;12705 19830;19831;19832 19831 3 GFFDPNTHENLTYVQLLR EEMNRVLADPSDDTKGFFDPNTHENLTYVQ DPNTHENLTYVQLLRRCVPDPDTGLYMLQL K G F L R R 0 1 2 1 0 1 1 1 1 0 3 0 0 2 1 0 2 0 1 1 0 0 18 0 2163.0749 A0A075B730;A0A087X1U6;P58107 A0A075B730 2360 2377 EPPK1 Epiplakin no no 3 6.8868E-17 105.28 2 2.1603 2.4374 6.4546 2 Median 2.1603 2.4374 6.4546 2 0 Median NaN NaN NaN 0 0 Median 132740000 42598000 90141000 132740000 42598000 90141000 0 0 0 4838 397;1622 4962 12706;12707 19833;19834;19835 19835 3 GFFEGTIASK IMPLDTNWPLLTVSKGFFEGTIASKGKGGA LTVSKGFFEGTIASKGKGGALAADIDIDTV K G F S K G 1 0 0 0 0 0 1 2 0 1 0 1 0 2 0 1 1 0 0 0 0 0 10 0 1055.5288 P53621 P53621 816 825 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0013084 86.67 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13821000 13821000 0 13821000 13821000 0 0 0 0 4839 1607 4963 12708 19836 19836 1 GFFICDQPYEPVSPYSCK LKDLKKGDIIQLQRRGFFICDQPYEPVSPY ICDQPYEPVSPYSCKEAPCVLIYIPDGHTK R G F C K E 0 0 0 1 2 1 1 1 0 1 0 1 0 2 3 2 0 0 2 1 0 0 18 0 2192.9547 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 676 693 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.01135 41.052 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4530700 0 4530700 4530700 0 4530700 0 0 0 4840 1454 4964 12709 19837 19837 1 GFGAFER KWHDKTKLASGKLGKGFGAFERSILTQIDH LASGKLGKGFGAFERSILTQIDHILMDKER K G F E R S 1 1 0 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 782.37114 Q9NY61;A0A087WWS8 Q9NY61 384 390 AATF Protein AATF yes no 2 0.027742 73.039 2 0.95868 1.096 NaN 1 Median 0.95868 1.096 NaN 1 0 Median NaN NaN NaN 0 0 Median 110540000 47897000 62642000 110540000 47897000 62642000 0 0 0 4841 2080 4965 12710;12711 19838;19839 19839 2 GFGFGLVK SYADLGKAARDIFNKGFGFGLVKLDVKTKS ARDIFNKGFGFGLVKLDVKTKSCSGVEFST K G F V K L 0 0 0 0 0 0 0 3 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 823.45922 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;Q5JSD2;Q5JSD1;A2A3S1 A0A0A0MR02 32 39 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.013671 64.776 2 2.3376 2.704 1.6513 2 Median 2.3376 2.704 1.6513 2 0 Median NaN NaN NaN 0 0 Median 474160000 146260000 327900000 474160000 146260000 327900000 0 0 0 4842 28 4966 12712;12713 19840;19841;19842;19843;19844;19845;19846 19840 7 GFGFGQGAGALVHSE EIYCKGCYAKNFGPKGFGFGQGAGALVHSE GFGFGQGAGALVHSE_______________ K G F S E - 2 0 0 0 0 1 1 5 1 0 1 0 0 2 0 1 0 0 0 1 0 0 15 0 1432.6735 Q6AI18;E9PP21;Q9BTA4;B4DY28;Q6ZMS3;P21291;Q6AWD1;B3KVC9 Q6AI18 141 155 DKFZp686M148;CSRP1;DKFZp686P2249 Cysteine and glycine-rich protein 1 yes no 2 0.0097647 51.276 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8247700 0 0 6199400 0 0 2048300 0 0 4843 1050 4967 12714;12715 19847;19848 19848 2 GFGFILFK VDCTIKMDPNTGRSRGFGFILFKDAASVEK PNTGRSRGFGFILFKDAASVEKVLDQKEHR R G F F K D 0 0 0 0 0 0 0 2 0 1 1 1 0 3 0 0 0 0 0 0 0 0 8 0 927.52182 D6R9P3;D6RD18;B4DMY3;D6RBZ0;Q53F64;Q99729 D6R9P3 112 119 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2 0.033206 46.37 1 1.7522 1.9049 NaN 1 Median 1.7522 1.9049 NaN 1 0 Median NaN NaN NaN 0 0 Median 3476700 1042100 2434600 3476700 1042100 2434600 0 0 0 4844 1008 4968 12716 19849 19849 1 GFGFVCFSSPEEATK TITSAKVMMEGGRSKGFGFVCFSSPEEATK GFGFVCFSSPEEATKAVTEMNGRIVATKPL K G F T K A 1 0 0 0 1 0 2 2 0 0 0 1 0 3 1 2 1 0 0 1 0 0 15 0 1661.7396 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;H0YAR2;Q5VX58;Q3ZCS4;Q9H361;Q2VIP3;Q4VXU2;H0YB86;B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;Q53GL4;H0YEU6;Q147Y3;Q3B867;Q59GZ7 A0A087WTT1 309 323 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 no no 2 8.793E-05 83.182 3 2 1.6437 1.4793 55.257 2 Median 2.1348 2.1865 NaN 1 0 Median 1.2655 1.0009 NaN 1 0 Median 29024000 14000000 15025000 21641000 9857200 11784000 7383300 4142400 3240900 4845 273;818 4969 12717;12718;12719;12720;12721 19850;19851;19852;19853;19854;19855;19856;19857 19854 8 GFGFVDFLTK TVRLPKKMTGTGTHRGFGFVDFLTKQDAKR TGTHRGFGFVDFLTKQDAKRAFNALCHSTH R G F T K Q 0 0 0 1 0 0 0 2 0 0 1 1 0 3 0 0 1 0 0 1 0 0 10 0 1129.5808 Q9Y4C8;A0A024RBL4;H0YIL2 Q9Y4C8 875 884 RBM19 Probable RNA-binding protein 19 yes no 2 0.0011505 75.378 2 1 0.98232 0.97588 5.195 3 Median 0.93556 0.93334 6.303 2 0 Median 1.131 0.9775 NaN 1 0 Median 17061000 8033500 9027600 15971000 7589600 8381800 1089700 443960 645770 4846 2145 4970 12722;12723;12724 19858;19859;19860;19861;19862 19859 5 GFGFVDFNSEEDAK VRARIVTDRETGSSKGFGFVDFNSEEDAKA KGFGFVDFNSEEDAKAAKEAMEDGEIDGNK K G F A K A 1 0 1 2 0 0 2 2 0 0 0 1 0 3 0 1 0 0 0 1 0 0 14 0 1560.6733 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 534 547 NCL Nucleolin yes no 2 1.812E-29 152.07 2 2 0.81421 0.80014 55.327 4 Median 1.1001 1.2936 1.2897 2 0 Median 0.60022 0.49623 0.91154 2 0 Median 741370000 368810000 372570000 664630000 320550000 344070000 76746000 48254000 28492000 4847 151 4971 12725;12726;12727;12728 19863;19864;19865;19866;19867;19868;19869;19870;19871;19872;19873 19864 11 GFGFVLFK VDCTLKLDPITGRSRGFGFVLFKESESVDK PITGRSRGFGFVLFKESESVDKVMDQKEHK R G F F K E 0 0 0 0 0 0 0 2 0 0 1 1 0 3 0 0 0 0 0 1 0 0 8 0 913.50617 D6RF44;H0YA96;D6RAF8;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103;D6RBQ9;B4DTA2;A0A087WUK2;A0A024RDF6;O14979 B4DTA2 41 48 HNRNPD;HNRPD;HNRNPDL;HNRPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like no no 2 0.042803 46.37 1 2.5213 2.6337 NaN 1 Median 2.5213 2.6337 NaN 1 0 Median NaN NaN NaN 0 0 Median 11863000 2842200 9020400 11863000 2842200 9020400 0 0 0 4848 383;385 4972 12729 19874 19874 1 GFGFVQFK VLEVNIPRKPDGKMRGFGFVQFKNLLEAGK KPDGKMRGFGFVQFKNLLEAGKALKGMNMK R G F F K N 0 0 0 0 0 1 0 2 0 0 0 1 0 3 0 0 0 0 0 1 0 0 8 0 928.48069 A0A024R753;Q9NW13;B4DJ90;C9JE21 A0A024R753 155 162 RBM28 RNA-binding protein 28 yes no 2 0.012692 67.035 1 0.96967 1.072 NaN 1 Median 0.96967 1.072 NaN 1 0 Median NaN NaN NaN 0 0 Median 57349000 31308000 26041000 57349000 31308000 26041000 0 0 0 4849 214 4973 12730 19875;19876 19875 2 GFGFVSFER ALSVKVMTDESGKSKGFGFVSFERHEDAQK ESGKSKGFGFVSFERHEDAQKAVDEMNGKE K G F E R H 0 1 0 0 0 0 1 2 0 0 0 0 0 3 0 1 0 0 0 1 0 0 9 0 1044.5029 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;H0YAR2;Q5VX58;Q3ZCS4;Q9H361;Q2VIP3;H0YAP2;A8K8J2 A0A087WTT1 207 215 PABPC1;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.011387 58.426 2 1.9596 2.0732 5.1232 2 Median 1.9596 2.0732 5.1232 2 0 Median NaN NaN NaN 0 0 Median 69303000 23019000 46283000 69303000 23019000 46283000 0 0 0 4850 273 4974 12731;12732 19877;19878;19879 19877 3 GFGFVTFDDHDPVDK DTIEIITDRQSGKKRGFGFVTFDDHDPVDK GFGFVTFDDHDPVDKIVLQKYHTINGHNAE R G F D K I 0 0 0 4 0 0 0 2 1 0 0 1 0 3 1 0 1 0 0 2 0 0 15 0 1694.7577 P22626;A0A087WUI2;I6L957;A0A024RA28 P22626 154 168 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 0.00018494 77.124 4 4 1.4577 1.1759 45.269 6 Median 2.2977 2.5349 3.657 2 0 Median 1.3353 1.0754 12.191 4 0 Median 151560000 41560000 110000000 125470000 30277000 95196000 26090000 11284000 14806000 4851 1508 4975 12733;12734;12735;12736;12737;12738;12739;12740 19880;19881;19882;19883;19884;19885;19886;19887;19888 19883 9 GFGFVTYATVEEVDAAMNAR TDCVVMRDPNTKRSRGFGFVTYATVEEVDA TYATVEEVDAAMNARPHKVDGRVVEPKRAV R G F A R P 4 1 1 1 0 0 2 2 0 0 0 0 1 2 0 0 2 0 1 3 0 0 20 0 2146.9994 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q9BSM5;Q0VAC0;Q6IPF2;F8VZ49;A0A024RC46;F8VYN5;B4DP35;F8W646;B4E0B5 F8W6I7 56 75 HNRNPA1;HNRPA1;hCG_2020860 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 2 1.6481E-13 109.44 2 2.895 2.94 5.4244 2 Median 2.895 2.94 5.4244 2 0 Median NaN NaN NaN 0 0 Median 36806000 8691500 28115000 36806000 8691500 28115000 0 0 0 4852 317 4976 12741;12742 19889;19890;19891 19890 240 3 GFGFVYFQNHDAADK EKAEIIADKQSGKKRGFGFVYFQNHDAADK GFGFVYFQNHDAADKAAVVKFHPIQGHRVE R G F D K A 2 0 1 2 0 1 0 2 1 0 0 1 0 3 0 0 0 0 1 1 0 0 15 0 1714.774 Q13151 Q13151 140 154 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 0.001196 43.897 3 2 1.2131 1.2394 34.696 5 Median 1.2299 1.262 3.0499 3 0 Median 0.85169 0.67588 0.18241 2 0 Median 79760000 39250000 40510000 70229000 34169000 36059000 9531400 5080900 4450400 4853 1706 4977 12743;12744;12745;12746;12747 19892;19893;19894;19895;19896 19892 4 GFGFWPAK YPCIPNHELVWAKMKGFGFWPAKVMQKEDN LVWAKMKGFGFWPAKVMQKEDNQVDVRFFG K G F A K V 1 0 0 0 0 0 0 2 0 0 0 1 0 2 1 0 0 1 0 0 0 0 8 0 908.45447 Q15326;E7ENI9;J3QKD2;Q5BJG6;B7Z3W2;B0QZE2;B7Z2J6;Q6PJR5;A0A0A0MRY2;Q5UGI2;B7Z3Z1 Q15326 290 297 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 2 0.017314 67.035 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5556800 0 5556800 5556800 0 5556800 0 0 0 4854 1758 4978 12748 19897 19897 1 GFGGITHGPPEK TGAVKEKITAFVVERGFGGITHGPPEKKMG VERGFGGITHGPPEKKMGIKASNTAEVFFD R G F E K K 0 0 0 0 0 0 1 4 1 1 0 1 0 1 2 0 1 0 0 0 0 0 12 0 1195.5986 Q53HR2;B4DEA8;P49748;B3KPA6 Q53HR2 287 298 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 2.9573E-08 109.83 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4856100 4856100 0 4856100 4856100 0 0 0 0 4855 965 4979 12749;12750 19898;19899 19899 2 GFGIGELVWGK ATKAGDDEPEYEDGRGFGIGELVWGKLRGF EDGRGFGIGELVWGKLRGFSWWPGRIVSWW R G F G K L 0 0 0 0 0 0 1 4 0 1 1 1 0 1 0 0 0 1 0 1 0 0 11 0 1161.6182 Q9Y6K1;F8WE91;Q59HC6;A0A0C4DG02 Q9Y6K1 289 299 DNMT3A DNA (cytosine-5)-methyltransferase 3A yes no 2 0.0031211 68.016 2 0.76582 0.78363 NaN 1 Median 0.76582 0.78363 NaN 1 0 Median NaN NaN NaN 0 0 Median 5862700 2425300 3437400 5862700 2425300 3437400 0 0 0 4856 2153 4980 12751;12752 19900;19901;19902 19902 3 GFGLEGVPEK PSMMPSPNSHAAGFKGFGLEGVPEKRLTDP AAGFKGFGLEGVPEKRLTDPGLSSLSALST K G F E K R 0 0 0 0 0 0 2 3 0 0 1 1 0 1 1 0 0 0 0 1 0 0 10 0 1031.5288 W5ZR30;Q9UGU0 W5ZR30 437 446 TCF20 Transcription factor 20 yes no 2 0.0055366 60.019 1 1 0.84595 0.86049 NaN 1 Median 0.84595 0.86049 NaN 1 0 Median NaN NaN NaN 0 0 Median 17846000 8341900 9503600 16863000 8341900 8521300 982320 0 982320 4857 2100 4981 12753;12754 19903;19904 19903 2 GFGYVTFSMLEDVQR KQCFVVTEKGSKACRGFGYVTFSMLEDVQR GFGYVTFSMLEDVQRALKEITTFEGCKINV R G F Q R A 0 1 0 1 0 1 1 2 0 0 1 0 1 2 0 1 1 0 1 2 0 0 15 0 1747.824 A0A024R753;Q9NW13;C9JE21;C9JAA9;A0A0S2Z5E5 A0A024R753 46 60 RBM28 RNA-binding protein 28 yes no 2 0.006242 42.475 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6129700 0 6129700 6129700 0 6129700 0 0 0 4858 214 4982 12755 19905 19905 162 1 GFHQVPFAPIVFIER SLDIQVPNFPADETKGFHQVPFAPIVFIER GFHQVPFAPIVFIERTDFKEEPEPGFKRLA K G F E R T 1 1 0 0 0 1 1 1 1 2 0 0 0 3 2 0 0 0 0 2 0 0 15 0 1755.9461 Q53HS0;P47897;A8K3A8;Q96AW5;B4DNN3;A0A1B0GVU9;H7C0R3;Q9H3A5;Q9BUZ3;B4DDN1;A0A0U1RRC8;A0A0U1RQX5 Q53HS0 602 616 QARS Glutamine--tRNA ligase yes no 3 0.0015476 37.555 2 2 0.90537 0.82801 54.629 4 Median 1.357 1.3482 9.4571 2 0 Median 0.61914 0.52646 4.5575 2 0 Median 28733000 12549000 16183000 20945000 7481900 13463000 7787800 5067500 2720200 4859 1575 4983 12756;12757;12758;12759 19906;19907;19908;19909;19910;19911;19912;19913 19909 8 GFIAGIDLK NPLYKERHQVQLLGRGFIAGIDLKQQKREQ VQLLGRGFIAGIDLKQQKREQSRFYGDLME R G F L K Q 1 0 0 1 0 0 0 2 0 2 1 1 0 1 0 0 0 0 0 0 0 0 9 0 932.53312 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 282 290 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.030931 52.716 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9254700 0 9254700 9254700 0 9254700 0 0 0 4860 63 4984 12760;12761;12762 19914;19915;19916 19916 3 GFINMQSVAK GDTTLFLSRLSTIWKGFINMQSVAKFVTKA STIWKGFINMQSVAKFVTKAYPVSGCFDYL K G F A K F 1 0 1 0 0 1 0 1 0 1 0 1 1 1 0 1 0 0 0 1 0 0 10 0 1093.559 Q9BTC0 Q9BTC0 1059 1068 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0040223 56.258 1 1.3755 1.3895 NaN 1 Median 1.3755 1.3895 NaN 1 0 Median NaN NaN NaN 0 0 Median 10098000 4245100 5852700 10098000 4245100 5852700 0 0 0 4861 2002 4985 12763 19917 19917 1841 1 GFLNSSELSGLPAGPDR MHCQTLKDQPSAYSKGFLNSSELSGLPAGP LNSSELSGLPAGPDREGSLKDQLALAIGKL K G F D R E 1 1 1 1 0 0 1 3 0 0 3 0 0 1 2 3 0 0 0 0 0 0 17 0 1715.8479 E5KS95;P43897;B4DHY8;C9JG32;C9JT21;F8VPA7;F8VS27 E5KS95 162 178 TSFM Elongation factor Ts, mitochondrial;Elongation factor Ts yes no 2 3.1553E-18 133.32 2 2 1.1676 1.0492 13.706 4 Median 1.0866 1.1741 17.337 2 0 Median 1.1951 1.0121 6.5205 2 0 Median 93974000 39593000 54381000 80395000 33833000 46561000 13579000 5759800 7819500 4862 1208 4986 12764;12765;12766;12767 19918;19919;19920;19921;19922;19923;19924 19920 7 GFLPETK PSATQSPISKKRKKKGFLPETKKRKKRKSE ISKKRKKKGFLPETKKRKKRKSEDGTPAED K G F T K K 0 0 0 0 0 0 1 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 7 0 790.4225 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1173 1179 MYBBP1A Myb-binding protein 1A yes no 2 0.026865 74.439 1 0.9922 1.1695 NaN 1 Median 0.9922 1.1695 NaN 1 0 Median NaN NaN NaN 0 0 Median 634060000 341700000 292360000 634060000 341700000 292360000 0 0 0 4863 1997 4987 12768 19925 19925 1 GFLSGLLDNVK CRCPRSKSYSSGNRKGFLSGLLDNVKQELA GNRKGFLSGLLDNVKQELAKNKEMKESIKK K G F V K Q 0 0 1 1 0 0 0 2 0 0 3 1 0 1 0 1 0 0 0 1 0 0 11 0 1161.6394 M0QXU7;Q9UPE4;Q53G69;O43615;M0R301;M0R124 M0QXU7 26 36 TIMM44;hTIM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.0027646 71.451 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5241800 1129400 4112400 5241800 1129400 4112400 0 0 0 4864 1351 4988 12769;12770;12771 19926;19927;19928 19926 3 GFLTERDDILCPDCGK DCFNCKKCSLSLVGRGFLTERDDILCPDCG FLTERDDILCPDCGKDI_____________ R G F G K D 0 1 0 3 2 0 1 2 0 1 2 1 0 1 1 0 1 0 0 0 0 0 16 1 1894.8553 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q53T40 I0CE67 252 267 FHL2 Four and a half LIM domains protein 2 yes no 3 0.00039995 47.64 1 1.9515 2.2492 NaN 1 Median 1.9515 2.2492 NaN 1 0 Median NaN NaN NaN 0 0 Median 28545000 7611600 20934000 28545000 7611600 20934000 0 0 0 4865 478 4989 12772 19929 19929 1 GFNEGLWEIDNNPK YSENKEKYGKPNKRKGFNEGLWEIDNNPKV KGFNEGLWEIDNNPKVKFSSQQAATKQSNA K G F P K V 0 0 3 1 0 0 2 2 0 1 1 1 0 1 1 0 0 1 0 0 0 0 14 0 1631.758 O75475;Q05CM9 O75475 76 89 PSIP1 PC4 and SFRS1-interacting protein yes no 2 1.7652E-10 117.09 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71619000 42315000 29304000 42315000 42315000 0 29304000 0 29304000 4866 1405 4990 12773;12774;12775;12776 19930;19931;19932;19933;19934 19931 5 GFPTDATLDDIK DEYKNDVKNRSVYIKGFPTDATLDDIKEWL YIKGFPTDATLDDIKEWLEDKGQVLNIQMR K G F I K E 1 0 0 3 0 0 0 1 0 1 1 1 0 1 1 0 2 0 0 0 0 0 12 0 1291.6296 B5BUB5;P05455;Q14730;E9PGX9;E7ERC4 B5BUB5 117 128 SSB Lupus La protein yes no 2 0.0098018 57.174 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4867 1077 4991 12777 19935 19935 1 GFQEVVTPNIFNSR YNALIEFIRSEYRKRGFQEVVTPNIFNSRL RGFQEVVTPNIFNSRLWMTSGHWQHYSENM R G F S R L 0 1 2 0 0 1 1 1 0 1 0 0 0 2 1 1 1 0 0 2 0 0 14 0 1606.8104 Q5M7Z9;B2RDX5;Q53GX7;P26639;B4DKZ9;B3KTN2 Q5M7Z9 368 381 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.0019562 65.842 1 1.6785 1.6513 NaN 1 Median 1.6785 1.6513 NaN 1 0 Median NaN NaN NaN 0 0 Median 14407000 6247400 8159300 14407000 6247400 8159300 0 0 0 4868 892 4992 12778 19936 19936 1 GFQQISFVNSIATSK QVNHRWEVCLTMSEKGFQQISFVNSIATSK GFQQISFVNSIATSKGGRHVDYVADQIVTK K G F S K G 1 0 1 0 0 2 0 1 0 2 0 1 0 2 0 3 1 0 0 1 0 0 15 0 1625.8413 P11388 P11388 307 321 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.5115E-30 151.98 2 2 1.022 1.0519 14.819 4 Median 0.77745 0.92508 0.56945 2 0 Median 1.3479 1.1956 0.52573 2 0 Median 3338800000 1710000000 1628700000 2195400000 1233000000 962400000 1143300000 477000000 666340000 4869 1471 4993 12779;12780;12781;12782 19937;19938;19939;19940;19941;19942;19943;19944;19945;19946;19947;19948;19949;19950;19951;19952;19953;19954 19952 18 GFQQISFVNSIATTK LANERWDVCLTLSEKGFQQISFVNSIATTK GFQQISFVNSIATTKGGRHVDYVVDQVVGK K G F T K G 1 0 1 0 0 2 0 1 0 2 0 1 0 2 0 2 2 0 0 1 0 0 15 0 1639.857 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 300 314 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 1.8587E-07 128.67 2 2 1.0534 0.85942 11.472 3 Median 0.64063 0.71934 NaN 1 0 Median 1.0644 0.87525 2.5813 2 0 Median 188840000 128950000 59895000 121500000 95350000 26147000 67344000 33596000 33748000 4870 1679 4994 12783;12784;12785;12786 19955;19956;19957;19958;19959;19960 19960 6 GFSDAEIR KKRGRPRTIPRENIKGFSDAEIRRFIKSYK IPRENIKGFSDAEIRRFIKSYKKFGGPLER K G F I R R 1 1 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 8 0 893.4243 O14646 O14646 1125 1132 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.032325 50.703 2 0.70198 0.74366 10.953 2 Median 0.70198 0.74366 10.953 2 0 Median NaN NaN NaN 0 0 Median 51504000 30378000 21126000 51504000 30378000 21126000 0 0 0 4871 1366 4995 12787;12788 19961;19962;19963 19961 3 GFSDKLDFLEGDQK QEKAHMMNAIKKYQKGFSDKLDFLEGDQKP KGFSDKLDFLEGDQKPLAQRKKAGAKGQQM K G F Q K P 0 0 0 3 0 1 1 2 0 0 2 2 0 2 0 1 0 0 0 0 0 0 14 1 1597.7624 Q6IB29;H7C2Q8;Q99848 Q6IB29 205 218 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2;3 0.00081934 44.82 2 0.87703 0.74693 16.543 2 Median NaN NaN NaN 0 0 Median 0.87703 0.74693 16.543 2 0 Median 23662000 13332000 10329000 0 0 0 23662000 13332000 10329000 4872 1316 4996 12789;12790 19964;19965;19966 19965 3 GFSDSGGGPPAK GPGGGRGRGSLLLRRGFSDSGGGPPAKQRD LRRGFSDSGGGPPAKQRDLEGAVSRLGGER R G F A K Q 1 0 0 1 0 0 0 4 0 0 0 1 0 1 2 2 0 0 0 0 0 0 12 0 1075.4934 Q9H307;A8K964;G3V5F0;G3V579 Q9H307 64 75 PNN Pinin yes no 2 0.0019127 72.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3534100 3534100 0 3534100 3534100 0 0 0 0 4873 2028 4997 12791 19967 19967 1 GFSEAAAPR ADLESLLQTPGGKPRGFSEAAAPRAFGLHC PGGKPRGFSEAAAPRAFGLHCRLSIHLQHK R G F P R A 3 1 0 0 0 0 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 9 0 904.44028 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 812 820 NCAPG2 Condensin-2 complex subunit G2 yes no 2 1.7362E-05 120.49 2 1.1956 1.3461 11.951 2 Median 1.1956 1.3461 11.951 2 0 Median NaN NaN NaN 0 0 Median 137130000 64948000 72183000 137130000 64948000 72183000 0 0 0 4874 1887 4998 12792;12793 19968;19969;19970 19970 3 GFSEEHNTWEPEK RRVVKGQVEYLLKWKGFSEEHNTWEPEKNL WKGFSEEHNTWEPEKNLDCPELISEFMKKY K G F E K N 0 0 1 0 0 0 4 1 1 0 0 1 0 1 1 1 1 1 0 0 0 0 13 0 1588.6794 V9HWG0;P45973;Q6I9T7;F8VNY3 V9HWG0 43 55 HEL25;CBX5 Chromobox protein homolog 5 yes no 2;3 6.4325E-08 112.44 3 3 0.76014 0.71417 16.947 6 Median 0.60387 0.66699 17.967 3 0 Median 0.9378 0.76571 2.0544 3 0 Median 153130000 92646000 60480000 115490000 73300000 42186000 37640000 19346000 18294000 4875 1568 4999 12794;12795;12796;12797;12798;12799 19971;19972;19973;19974;19975;19976;19977;19978 19972 7 GFSLEELR RCTTVRYHTKVRAGRGFSLEELRVAGIHKK TKVRAGRGFSLEELRVAGIHKKVARTIGIS R G F L R V 0 1 0 0 0 0 2 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 949.4869 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 75 82 RPL13 60S ribosomal protein L13 yes no 2 0.0016206 107.32 2 2 0.83778 0.84639 24.853 4 Median 0.87662 1.0332 1.1118 2 0 Median 0.77624 0.67396 5.1189 2 0 Median 1759200000 948500000 810750000 1583900000 846430000 737460000 175360000 102070000 73290000 4876 733 5000 12800;12801;12802;12803 19979;19980;19981;19982;19983;19984;19985;19986;19987 19983 9 GFSLLATEDK EELGFRPEYSASQLKGFSLLATEDKEALKK ASQLKGFSLLATEDKEALKKQLPGVKSEGK K G F D K E 1 0 0 1 0 0 1 1 0 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1079.5499 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q96P95 A0A024R3T8 183 192 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 4.7334E-08 116.37 2 2 0.87647 0.85469 14.306 4 Median 0.65181 0.74943 2.6811 2 0 Median 1.1483 0.95874 0.34131 2 0 Median 485580000 274440000 211140000 393340000 234030000 159300000 92238000 40403000 51835000 4877 139 5001 12804;12805;12806;12807 19988;19989;19990;19991;19992;19993;19994;19995;19996;19997;19998;19999;20000;20001 19990 14 GFSSGSAVVSGGSR SCKSRGRGGGGGGFRGFSSGSAVVSGGSRR RGFSSGSAVVSGGSRRSTSSFSCLSRHGGG R G F S R R 1 1 0 0 0 0 0 4 0 0 0 0 0 1 0 5 0 0 0 2 0 0 14 0 1253.6 CON__P35908;P35908 CON__P35908 21 34 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 7.0016E-10 113.47 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61112000 61112000 0 39507000 39507000 0 21606000 21606000 0 + 4878 1166 5002 12808;12809;12810 20002;20003;20004 20002 3 GFTESFGAANISQAAR LSGQAQPPEGSEDPRGFTESFGAANISQAA FTESFGAANISQAARERDCESVCFIGRPWR R G F A R E 4 1 1 0 0 1 1 2 0 1 0 0 0 2 0 2 1 0 0 0 0 0 16 0 1625.7798 Q6AHZ7;Q12789;Q6AWA4;H3BU37 Q6AHZ7 1958 1973 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 2.9913E-06 90.614 3 1 0.88231 0.88037 47.712 3 Median 0.84597 0.8618 3.0149 2 0 Median 2.1927 1.9677 NaN 1 0 Median 32470000 18132000 14338000 30196000 17349000 12847000 2274100 783340 1490800 4879 1699 5003 12811;12812;12813;12814 20005;20006;20007;20008;20009;20010;20011 20007 7 GFTGIDSDYEKPETPER DVKGLYKRARAGEIKGFTGIDSDYEKPETP TGIDSDYEKPETPERVLKTNLSTVSDCVHQ K G F E R V 0 1 0 2 0 0 3 2 0 1 0 1 0 1 2 1 2 0 1 0 0 0 17 1 1939.88 Q5TB52;B4DWB5;O95340 Q5TB52 174 190 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 3 1.6723E-05 72.819 1 5.0712 5.5007 NaN 1 Median 5.0712 5.5007 NaN 1 0 Median NaN NaN NaN 0 0 Median 15365000 2692500 12673000 15365000 2692500 12673000 0 0 0 4880 1044 5004 12815 20012 20012 1 GFTIPEAFR LPKLHIVQVVCKKYRGFTIPEAFRGVHRYL VCKKYRGFTIPEAFRGVHRYLSNAYAREEF R G F F R G 1 1 0 0 0 0 1 1 0 1 0 0 0 2 1 0 1 0 0 0 0 0 9 0 1036.5342 Q5SRT3;Q53FB0;O00299 Q5SRT3 196 204 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 0.0039394 70.525 2 2 2.4498 2.3047 37.526 4 Median 3.0603 3.2 16.521 2 0 Median 1.9624 1.7238 11.175 2 0 Median 53965000 13853000 40112000 49293000 12128000 37165000 4672000 1725200 2946800 4881 1362 5005 12816;12817;12818;12819 20013;20014;20015;20016;20017 20014 5 GFTLGVEDILVK TCLARLFTAYLQLYRGFTLGVEDILVKPKA LYRGFTLGVEDILVKPKADVKRQRIIEEST R G F V K P 0 0 0 1 0 0 1 2 0 1 2 1 0 1 0 0 1 0 0 2 0 0 12 0 1289.7231 O95602;B9ZVN9;B7ZKR9;B7Z8X7;B7Z284 O95602 794 805 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.00058242 68.847 2 0.89799 0.93362 NaN 1 Median 0.89799 0.93362 NaN 1 0 Median NaN NaN NaN 0 0 Median 6899300 2416600 4482700 6899300 2416600 4482700 0 0 0 4882 1428 5006 12820;12821 20018;20019 20018 2 GFTLNDAANSR TQAMEVKAFAETHIKGFTLNDAANSRLIIT THIKGFTLNDAANSRLIITQVRRDYLKEAV K G F S R L 2 1 2 1 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1164.5523 E5KNY5;P42704;B4DSR0 E5KNY5 1099 1109 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 7.8974E-05 98.044 1 2.0199 2.0665 NaN 1 Median 2.0199 2.0665 NaN 1 0 Median NaN NaN NaN 0 0 Median 31725000 15451000 16274000 31725000 15451000 16274000 0 0 0 4883 1207 5007 12822 20020 20020 1 GFVEIQTPK QSGICHLFRETLINKGFVEIQTPKIISAAS ETLINKGFVEIQTPKIISAASEGGANVFTV K G F P K I 0 0 0 0 0 1 1 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 9 0 1017.5495 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 181 189 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.020683 50.04 2 0.97431 0.8337 0.98865 2 Median NaN NaN NaN 0 0 Median 0.97431 0.8337 0.98865 2 0 Median 3088500 1643800 1444600 0 0 0 3088500 1643800 1444600 4884 610 5008 12823;12824 20021;20022 20022 2 GFVHPDPLWIPFK QEHRLFERLRETVTKGFVHPDPLWIPFKEV TKGFVHPDPLWIPFKEVAVTLIYQLAEGPE K G F F K E 0 0 0 1 0 0 0 1 1 1 1 1 0 2 3 0 0 1 0 1 0 0 13 0 1551.8238 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 856 868 NCAPD2 Condensin complex subunit 1 yes no 2;3 6.8156E-10 114.5 3 4 1.4155 1.1019 20.948 7 Median 0.80671 0.86349 8.001 3 0 Median 1.5586 1.2297 9.7643 4 0 Median 141170000 67367000 73801000 85335000 44880000 40455000 55834000 22487000 33347000 4885 908 5009 12825;12826;12827;12828;12829;12830;12831 20023;20024;20025;20026;20027;20028;20029;20030;20031;20032;20033;20034;20035;20036 20026 13 GFVLQDTVEQLR QTKITQDIFQQLLKRGFVLQDTVEQLRCEH LKRGFVLQDTVEQLRCEHCARFLADRFVEG R G F L R C 0 1 0 1 0 2 1 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1403.7409 A8K492;P56192;B4DF61;B4E0E9;H0YHV5;H0YIC2 A8K492 377 388 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.0019217 59.908 2 1.3573 1.202 8.8054 2 Median NaN NaN NaN 0 0 Median 1.3573 1.202 8.8054 2 0 Median 3401300 1526300 1874900 0 0 0 3401300 1526300 1874900 4886 732 5010 12832;12833 20037;20038;20039;20040 20038 4 GFVPNMQVEGVFYVNDALEK QFLEKINKNCWRIKKGFVPNMQVEGVFYVN MQVEGVFYVNDALEKLMFEELRNACRGGGV K G F E K L 1 0 2 1 0 1 2 2 0 0 1 1 1 2 1 0 0 0 1 4 0 0 20 0 2255.0933 Q9Y3I0;B4DNA0;B4DNG5;B4DXF1 Q9Y3I0 25 44 RTCB tRNA-splicing ligase RtcB homolog yes no 2 2.1143E-07 83.499 1 1.7524 1.7839 NaN 1 Median 1.7524 1.7839 NaN 1 0 Median NaN NaN NaN 0 0 Median 13285000 4897800 8387300 13285000 4897800 8387300 0 0 0 4887 2137 5011 12834 20041 20041 1973 1 GFVPSPTSQPGGHESLVDR KLWNATKFALRGLGKGFVPSPTSQPGGHES SPTSQPGGHESLVDRWIRSRLTEAVRLSNQ K G F D R W 0 1 0 1 0 1 1 3 1 0 1 0 0 1 3 3 1 0 0 2 0 0 19 0 1965.9545 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 967 985 VARS Valine--tRNA ligase yes no 3 1.2733E-05 37.237 2 0.8607 0.9128 23.792 2 Median 0.8607 0.9128 23.792 2 0 Median NaN NaN NaN 0 0 Median 58106000 33144000 24962000 58106000 33144000 24962000 0 0 0 4888 363 5012 12835;12836 20042;20043 20043 2 GFVQVDDGRK YQDRMNDIVKEFEDRGFVQVDDGRKIVFVP EFEDRGFVQVDDGRKIVFVPGCSIPLTIVK R G F R K I 0 1 0 2 0 1 0 2 0 0 0 1 0 1 0 0 0 0 0 2 0 0 10 1 1119.5673 P54136;B4DXW6 P54136 353 362 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.00026049 102.51 1 1.9294 2.245 NaN 1 Median 1.9294 2.245 NaN 1 0 Median NaN NaN NaN 0 0 Median 30442000 9552800 20889000 30442000 9552800 20889000 0 0 0 4889 1609 5013 12837 20044 20044 1 GFVTGGADK HDGALWSMSLSPDQRGFVTGGADKSVKFWD LSPDQRGFVTGGADKSVKFWDFELVKDENS R G F D K S 1 0 0 1 0 0 0 3 0 0 0 1 0 1 0 0 1 0 0 1 0 0 9 0 850.41848 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 510 518 WDR3 WD repeat-containing protein 3 yes no 1;2 0.0038088 70.856 2 0.88112 0.91967 8.042 2 Median 0.88112 0.91967 8.042 2 0 Median NaN NaN NaN 0 0 Median 76816000 40071000 36745000 76816000 40071000 36745000 0 0 0 4890 1827 5014 12838;12839 20045;20046;20047 20045 2 GFVVINQK KIIELKRKVCGDSDKGFVVINQKGIDPFSL VCGDSDKGFVVINQKGIDPFSLDALSKEGI K G F Q K G 0 0 1 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 0 2 0 0 8 0 903.5178 Q59ET3;B2R9K8;A0A024RDL1;P40227;A1JUI8;B4DPJ8;B4DN39;Q92526 Q59ET3 286 293 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 2 0.0047036 88.734 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4891 389 5015 12840 20048 20048 1 GFYDPPRR HRYIEIFRSSRSEIKGFYDPPRRLLGQRPG SSRSEIKGFYDPPRRLLGQRPGPYDRPIGG K G F R R L 0 2 0 1 0 0 0 1 0 0 0 0 0 1 2 0 0 0 1 0 0 0 8 1 1006.4985 Q53F48;A0A024QZK8;P31942 Q53F48 98 105 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 3 0.020579 29.376 1 1.9075 1.9245 NaN 1 Median 1.9075 1.9245 NaN 1 0 Median NaN NaN NaN 0 0 Median 10353000 4208900 6143700 10353000 4208900 6143700 0 0 0 4892 23 5016 12841 20049 20049 1 GFYIYQEGVK TQMVSKGFLGRKSGKGFYIYQEGVKRKDLN RKSGKGFYIYQEGVKRKDLNSDMDSILASL K G F V K R 0 0 0 0 0 1 1 2 0 1 0 1 0 1 0 0 0 0 2 1 0 0 10 0 1202.5972 E9KL44;P40939;B4DRH6;B4DDZ5;H0YFD6 E9KL44 635 644 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.0023262 69.598 2 2 1.2493 1.2796 24.879 3 Plateau 1.2521 1.2764 0.35301 2 0 Median 1.0468 0.82957 NaN 1 0 Median 61580000 25666000 35914000 54863000 23279000 31583000 6717300 2387000 4330400 4893 1228 5017 12842;12843;12844;12845 20050;20051;20052;20053;20054 20050 5 GGAANQALLHSK FNLSSSISSENSLIKGGAANQALLHSKSKQ LIKGGAANQALLHSKSKQPKFRSIKCKHKE K G G S K S 3 0 1 0 0 1 0 2 1 0 2 1 0 0 0 1 0 0 0 0 0 0 12 0 1165.6204 B2RWP5;Q96L73;Q96MN8;Q8NB95;A4QPE5 B2RWP5 501 512 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.0015987 76.228 2 2 2.1207 1.7903 8.7401 2 Median NaN NaN NaN 0 0 Median 2.1207 1.7903 8.7401 2 0 Median 5974000 4059500 1914500 3119900 3119900 0 2854100 939680 1914500 4894 898 5018 12846;12847;12848;12849 20055;20056;20057;20058 20055 4 GGAAPEGPNEAEVTSGKPEQEVPDAEEEK DLTLDWLTETSEEAKGGAAPEGPNEAEVTS SGKPEQEVPDAEEEKSVSGTDVQEECREKG K G G E K S 4 0 1 1 0 1 8 4 0 0 0 2 0 0 4 1 1 0 0 2 0 0 29 1 2950.3316 Q53H03;P49321;Q6PJY7;E9PPR5;B4DS57 Q53H03 215 243 NASP Nuclear autoantigenic sperm protein yes no 3 0.0042927 30.509 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13512000 0 13512000 13512000 0 13512000 0 0 0 4895 1579 5019 12850;12851 20059;20060 20060 2 GGAAVDPDSGLEHSAHVLEK EGINKSEKRMKLTLKGGAAVDPDSGLEHSA DPDSGLEHSAHVLEKGGKVFSATLGLVDIV K G G E K G 3 0 0 2 0 0 2 3 2 0 2 1 0 0 1 2 0 0 0 2 0 0 20 0 1987.9599 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 529 548 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 8.6762E-07 64.249 3 2 0.8702 0.82989 17.443 4 Median 0.63604 0.70507 4.6962 2 0 Median 1.1423 0.95017 0.78616 2 0 Median 216230000 119930000 96307000 131610000 79108000 52505000 84620000 40819000 43801000 4896 139 5020 12852;12853;12854;12855;12856 20061;20062;20063;20064;20065;20066;20067;20068;20069;20070 20064 9 GGAEGELQALR IRVVRLQLEATERQRGGAEGELQALRARAE ERQRGGAEGELQALRARAEEAEAQKRQAQE R G G L R A 2 1 0 0 0 1 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1099.5622 Q15149 Q15149 1606 1616 PLEC Plectin yes yes 2 3.7956E-06 103.55 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27557000 10243000 17314000 27557000 10243000 17314000 0 0 0 4897 1754 5021 12857;12858;12859;12860 20071;20072;20073;20074 20074 4 GGAEQFMEETER FTGCPKAKTCTFILRGGAEQFMEETERSLH ILRGGAEQFMEETERSLHDAIMIVRRAIKN R G G E R S 1 1 0 0 0 1 4 2 0 0 0 0 1 1 0 0 1 0 0 0 0 0 12 0 1382.5772 Q6IBT3;Q53HV2;Q99832;B7Z7I4;B7Z1C9 Q6IBT3 376 387 CCT7 T-complex protein 1 subunit eta yes no 2 2.0525E-06 104.22 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5514800 0 5514800 5514800 0 5514800 0 0 0 4898 1791 5022 12861;12862 20075;20076 20075 1657 2 GGAPAEGEGAAETLPEASR SEPQPEEGSPAGGQKGGAPAEGEGAAETLP AEGEGAAETLPEASRAVENGCCTPKEGRGA K G G S R A 5 1 0 0 0 0 4 4 0 0 1 0 0 0 2 1 1 0 0 0 0 0 19 0 1768.8228 Q9Y6K1;F8WE91;Q59HC6 Q9Y6K1 112 130 DNMT3A DNA (cytosine-5)-methyltransferase 3A yes no 2 7.0863E-17 119.87 2 1 1.0264 1.0251 21.276 3 Median 1.0202 1.0206 0.62817 2 0 Median 1.7143 1.4752 NaN 1 0 Median 36584000 17541000 19043000 33807000 16437000 17370000 2776400 1103300 1673100 4899 2153 5023 12863;12864;12865 20077;20078;20079 20078 3 GGAPFQFGGQR AQFEGTEQAPFLGSRGGAPFQFGGQRRPLL LGSRGGAPFQFGGQRRPLLSQLKGPRGGPP R G G Q R R 1 1 0 0 0 2 0 4 0 0 0 0 0 2 1 0 0 0 0 0 0 0 11 0 1120.5414 Q9BTC0 Q9BTC0 1883 1893 DIDO1 Death-inducer obliterator 1 yes yes 2 0.025004 41.448 1 1.2656 1.2614 NaN 1 Median 1.2656 1.2614 NaN 1 0 Median NaN NaN NaN 0 0 Median 8114200 3200900 4913300 8114200 3200900 4913300 0 0 0 4900 2002 5024 12866 20080 20080 1 GGDDLGTEIANTLYR FVDCSASATPEFEGRGGDDLGTEIANTLYR GGDDLGTEIANTLYRIFNNKSSVDLKTLCI R G G Y R I 1 1 1 2 0 0 1 3 0 1 2 0 0 0 0 0 2 0 1 0 0 0 15 0 1593.7635 B2RDZ9;A0A024R2P7;Q15024;B4DIU0 B2RDZ9 97 111 EXOSC7 Exosome complex component RRP42 yes no 2 7.7621E-22 140.78 2 2 0.91142 0.98542 8.9776 4 Linear 0.86009 0.92121 6.9796 2 0 Median 0.97559 0.81286 6.0413 2 0 Median 98214000 50620000 47594000 63407000 32563000 30844000 34807000 18058000 16749000 4901 120 5025 12867;12868;12869;12870 20081;20082;20083;20084;20085;20086;20087;20088 20086 8 GGDLMAYDR SRARNLPLPPPPPPRGGDLMAYDRRGRPGD PPPPPRGGDLMAYDRRGRPGDRYDGMVGFS R G G D R R 1 1 0 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 9 0 996.43348 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2;B3KU16 B4DUQ1 293 301 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 0.010439 49.418 2 2.5044 2.6471 2.9961 2 Median 2.5044 2.6471 2.9961 2 0 Median NaN NaN NaN 0 0 Median 49252000 15559000 33692000 49252000 15559000 33692000 0 0 0 4902 102 5026 12871;12872 20089;20090 20090 88 2 GGDSIGETPTPGASK PGHGSGWAETPRTDRGGDSIGETPTPGASK GGDSIGETPTPGASKRKSRWDETPASQMGG R G G S K R 1 0 0 1 0 0 1 4 0 1 0 1 0 0 2 2 2 0 0 0 0 0 15 0 1372.647 O75533;Q7Z497;A0JLT9;Q32Q20;A0PJH5 O75533 319 333 SF3B1 Splicing factor 3B subunit 1 yes no 2 7.996E-07 96.113 2 1.6406 1.6667 NaN 1 Median 1.6406 1.6667 NaN 1 0 Median NaN NaN NaN 0 0 Median 15823000 5057700 10765000 15823000 5057700 10765000 0 0 0 4903 1408 5027 12873;12874 20091;20092;20093;20094 20091 4 GGEADNLDEFLK CLTPLVPEDLRKRRKGGEADNLDEFLKEFE RRKGGEADNLDEFLKEFENPEVPREDQQQQ K G G L K E 1 0 1 2 0 0 2 2 0 0 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1306.6041 A0A024R9J0;O60216 A0A024R9J0 407 418 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 0.00029759 73.067 1 0.59185 0.59369 NaN 1 Median 0.59185 0.59369 NaN 1 0 Median NaN NaN NaN 0 0 Median 15872000 10357000 5515000 15872000 10357000 5515000 0 0 0 4904 280 5028 12875 20095 20095 1 GGELVYTDSEAR ETGLCLLPLTDKAAKGGELVYTDSEARDVF AAKGGELVYTDSEARDVFEKATVSAPFGKF K G G A R D 1 1 0 1 0 0 2 2 0 0 1 0 0 0 0 1 1 0 1 1 0 0 12 0 1295.5994 Q15149;D3DWL0 Q15149 3028 3039 PLEC;PLEC1 Plectin yes no 2 2.3368E-05 100.48 3 1 1.5505 1.7546 9.2556 2 Median 1.5505 1.7546 9.2556 2 0 Median NaN NaN NaN 0 0 Median 156110000 50505000 105600000 152800000 50505000 102290000 3310500 0 3310500 4905 1754 5029 12876;12877;12878;12879 20096;20097;20098;20099;20100;20101 20100 6 GGEPDLQTVGK DFLEKLAFRTGKLLKGGEPDLQTVGKMVLN KLLKGGEPDLQTVGKMVLNDWQRGRIPFFV K G G G K M 0 0 0 1 0 1 1 3 0 0 1 1 0 0 1 0 1 0 0 1 0 0 11 0 1099.551 Q5T0F3;Q13823 Q5T0F3 435 445 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.021359 43.308 1 1.2385 1.0165 NaN 1 Median NaN NaN NaN 0 0 Median 1.2385 1.0165 NaN 1 0 Median 5260700 2545600 2715100 0 0 0 5260700 2545600 2715100 4906 1721 5030 12880 20102 20102 1 GGEPQGPPFIK PETGLAFLPLSGGPRGGEPQGPPFIKYSTR GGPRGGEPQGPPFIKYSTRQALSTATATVS R G G I K Y 0 0 0 0 0 1 1 3 0 1 0 1 0 1 3 0 0 0 0 0 0 0 11 0 1125.5819 A0A075B730;A0A087X1U6;P58107 A0A075B730 449 459 EPPK1 Epiplakin no no 2 0.00068785 73.248 1 2.9631 3.008 NaN 1 Median 2.9631 3.008 NaN 1 0 Median NaN NaN NaN 0 0 Median 12808000 3925000 8882800 12808000 3925000 8882800 0 0 0 4907 397;1622 5031 12881 20103 20103 1 GGFAVQAK ______________________________ ATKRKRRGGFAVQAKKPKRNEIDAEPPAKR R G G A K K 2 0 0 0 0 1 0 2 0 0 0 1 0 1 0 0 0 0 0 1 0 0 8 0 776.41809 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4;Q05CP8 Q8TDN6 10 17 BRIX1;BXDC2;CCDC6 Ribosome biogenesis protein BRX1 homolog no no 2 0.010809 71.378 2 0.97748 1.1001 3.2929 2 Median 0.97748 1.1001 3.2929 2 0 Median NaN NaN NaN 0 0 Median 197810000 98307000 99499000 197810000 98307000 99499000 0 0 0 4908 1934;1686 5032 12882;12883 20104;20105;20106 20106 3 GGFCNFMHLK REACCRQYEMGECTRGGFCNFMHLKPISRE GECTRGGFCNFMHLKPISRELRRELYGRRR R G G L K P 0 0 1 0 1 0 0 2 1 0 1 1 1 2 0 0 0 0 0 0 0 0 10 0 1209.5423 P0DN76;Q01081;Q7Z780 P0DN76 166 175 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2 0.00053376 69.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4909 1463 5033 12884 20107 20107 1177 1 GGFDGEYQDDSLDLLR QERAWYDNHREALLKGGFDGEYQDDSLDLL GFDGEYQDDSLDLLRYFTVTCYSGYGDDEK K G G L R Y 0 1 0 4 0 1 1 3 0 0 3 0 0 1 0 1 0 0 1 0 0 0 16 0 1798.801 Q5F1R6 Q5F1R6 75 90 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 3.4041E-06 89.301 2 1 0.64024 0.638 3.0048 3 Median 0.6293 0.63206 1.3222 2 0 Median 0.77794 0.66411 NaN 1 0 Median 37476000 18663000 18813000 31782000 15528000 16254000 5693800 3134700 2559000 4910 1806 5034 12885;12886;12887 20108;20109;20110 20109 3 GGFLYLNR PITAVSLMEALSADKGGFLYLNRVLVILLQ EALSADKGGFLYLNRVLVILLQTLLQDEIA K G G N R V 0 1 1 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 1 0 0 0 8 0 938.4974 Q9UIG0 Q9UIG0 646 653 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.03624 55.441 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43107000 0 43107000 43107000 0 43107000 0 0 0 4911 2103 5035 12888 20111 20111 1 GGFVPYR LCLGNVISALGDDKKGGFVPYRDSKLTRLL SALGDDKKGGFVPYRDSKLTRLLQDSLGGN K G G Y R D 0 1 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 1 1 0 0 7 0 794.40752 Q59HG1;O95239;Q6PKB2 Q59HG1 286 292 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.034447 62.338 2 1 0.89436 0.99262 15.132 3 Median 0.87003 0.97885 1.9749 2 0 Median 1.4763 1.2708 NaN 1 0 Median 173230000 96236000 76998000 165790000 93183000 72609000 7442000 3053100 4388800 4912 1803 5036 12889;12890;12891 20112;20113;20114 20112 3 GGGAFVQNSQPVAVR GQHPAASPTHPSAIRGGGAFVQNSQPVAVR GGGAFVQNSQPVAVRGGGGKQV________ R G G V R G 2 1 1 0 0 2 0 3 0 0 0 0 0 1 1 1 0 0 0 3 0 0 15 0 1485.7688 V9HW29;D3DRX6;P33176;B4DS27 V9HW29 942 956 HEL-S-61;KIF5B Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.00044622 91.549 3 1 1.5089 1.3107 NaN 1 Median NaN NaN NaN 0 0 Median 1.5089 1.3107 NaN 1 0 Median 8229600 1100800 7128700 5992300 0 5992300 2237200 1100800 1136400 4913 1186 5037 12892;12893;12894;12895 20115;20116;20117;20118 20116 4 GGGAGGSSVGTGGGGTGGVGGGAGSEDSGDR SAPDSAPGPAPKRPRGGGAGGSSVGTGGGG GGVGGGAGSEDSGDRGGTLGGGTLGPPSPP R G G D R G 2 1 0 2 0 0 1 17 0 0 0 0 0 0 0 4 2 0 0 2 0 0 31 0 2393.0076 A0A024RCR9;Q06587;B4DVB5;B4DW57 A0A024RCR9 176 206 RING1 E3 ubiquitin-protein ligase RING1 yes no 2 4.2231E-39 105.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8101700 8101700 0 8101700 8101700 0 0 0 0 4914 369 5038 12896 20119 20119 1 GGGATGPGGAEPGEDTALLR GRGNGAERVRVALRRGGGATGPGGAEPGED GPGGAEPGEDTALLRLLGLRRGLRRLRRLW R G G L R L 3 1 0 1 0 0 2 7 0 0 2 0 0 0 2 0 2 0 0 0 0 0 20 0 1781.8544 Q9UMN6;A0A0G2R4E5 Q9UMN6 50 69 KMT2B Histone-lysine N-methyltransferase 2B yes no 2 0.0011559 52.5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3874000 3874000 0 3874000 3874000 0 0 0 0 4915 2113 5039 12897;12898 20120;20121 20120 2 GGGEGNVDETGNNPSVSLK DNDVEVIKVWNSRSRGGGEGNVDETGNNPS GNVDETGNNPSVSLKLEESKATSSSNPSSP R G G L K L 0 0 3 1 0 0 2 5 0 0 1 1 0 0 1 2 1 0 0 2 0 0 19 0 1829.8391 A4LAA3;P46100;B4DHH8;B4DLE1;A0A096LNX6 A4LAA3 1964 1982 ATRX Transcriptional regulator ATRX yes no 2 1.6975E-30 146.79 2 0.84008 0.9153 2.0194 2 Median 0.84008 0.9153 2.0194 2 0 Median NaN NaN NaN 0 0 Median 86246000 46438000 39808000 86246000 46438000 39808000 0 0 0 4916 672 5040 12899;12900 20122;20123;20124;20125 20125 4 GGGEQETQELASK RGGGGGPCGFQPASRGGGEQETQELASKRL SRGGGEQETQELASKRLDIQNKRFYLDVKQ R G G S K R 1 0 0 0 0 2 3 3 0 0 1 1 0 0 0 1 1 0 0 0 0 0 13 0 1332.6157 Q96QR8 Q96QR8 25 37 PURB Transcriptional activator protein Pur-beta yes yes 2 4.5265E-11 118.4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3378600 3378600 0 3378600 3378600 0 0 0 0 4917 1986 5041 12901;12902 20126;20127 20126 2 GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR SVSTSHTTISGGGSRGGGGGGYGSGGSSYG GGGSYGSGGGGGGGRGSYGSGGSSYGSGGG R G G G R G 0 1 0 0 0 0 0 21 0 0 0 0 0 0 0 6 0 0 3 0 0 0 31 0 2382.9446 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 519 549 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.2279E-06 64.2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1511900000 1511900000 0 1511900000 1511900000 0 0 0 0 + 4918 1308;1309 5042 12903;12904 20128;20129 20128 2 GGGGGQDNGLEGLGNDSR KRGERGSERGRDEARGGGGGQDNGLEGLGN GGQDNGLEGLGNDSRDMYMESEGGDGYLAP R G G S R D 0 1 2 2 0 1 1 8 0 0 2 0 0 0 0 1 0 0 0 0 0 0 18 0 1658.7245 A8KAQ5;A0A024QZD5;P08621;Q9UFS1;B3KPV0 A8KAQ5 394 411 SNRP70;SNRNP70;DKFZp434N041 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 1.0369E-12 98.942 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6117600 0 6117600 6117600 0 6117600 0 0 0 4919 17 5043 12905 20130 20130 1 GGGGNFGPGPGSNFR SRSGRGGNFGFGDSRGGGGNFGPGPGSNFR GGGGNFGPGPGSNFRGGSDGYGSGRGFGDG R G G F R G 0 1 2 0 0 0 0 7 0 0 0 0 0 2 2 1 0 0 0 0 0 0 15 0 1376.6222 P22626;A0A024RA28 P22626 214 228 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 2.0937E-15 133.07 2 2 2.5063 1.9253 47.773 4 Linear 2.4902 2.9207 2.3933 2 0 Median 1.5091 1.2774 1.4705 2 0 Median 770840000 230270000 540570000 726200000 212250000 513940000 44649000 18018000 26631000 4920 1508 5044 12906;12907;12908;12909 20131;20132;20133;20134;20135;20136 20132 6 GGGGYTCQSGSGWDEFTK YKAISVPRVRRASSKGGGGYTCQSGSGWDE GYTCQSGSGWDEFTKHVTSECLGWMRQQRA K G G T K H 0 0 0 1 1 1 1 6 0 0 0 1 0 1 0 2 2 1 1 0 0 0 18 0 1892.7635 P15924;Q4LE79;B4E2A0 P15924 168 185 DSP;DSP variant protein Desmoplakin yes no 2 0.0001654 65.043 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7534600 7534600 0 7534600 7534600 0 0 0 0 4921 1486 5045 12910;12911 20137;20138 20138 2 GGGHVAQIYAIR GKERFAGVDIRVRVKGGGHVAQIYAIRQSI RVKGGGHVAQIYAIRQSISKALVAYYQKYV K G G I R Q 2 1 0 0 0 1 0 3 1 2 0 0 0 0 0 0 0 0 1 1 0 0 12 0 1240.6677 P62249;M0R210;M0R3H0;M0R1M5;M0QX76 P62249 74 85 RPS16 40S ribosomal protein S16 yes no 2;3 6.5389E-60 204.36 5 4 0.87129 0.75414 30.23 7 Median 1.0247 1.1887 9.6431 3 0 Median 0.84317 0.75795 4.8329 4 0 Linear 1257700000 559510000 698190000 1108200000 481760000 626460000 149490000 77754000 71732000 4922 1636 5046 12912;12913;12914;12915;12916;12917;12918;12919;12920 20139;20140;20141;20142;20143;20144;20145;20146;20147;20148;20149;20150;20151;20152;20153;20154 20144 16 GGGNQVSLLNVVMDLK YKYILTRNFEALNARGGGNQVSLLNVVMDL GGNQVSLLNVVMDLKKCCNHPYLFPVAAME R G G L K K 0 0 2 1 0 1 0 3 0 0 3 1 1 0 0 1 0 0 0 3 0 0 16 0 1642.8712 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 994 1009 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 1.6263E-10 112.5 3 2 1.1613 1.8265 41.267 4 Linear 0.70413 0.76515 65.677 2 0 Median 1.2562 1.0132 2.6134 2 0 Median 104920000 50609000 54308000 82193000 40919000 41273000 22725000 9690100 13035000 4923 515 5047;5048 12921;12922;12923;12924;12925 20155;20156;20157;20158;20159;20160 20158 374 6 GGGNQVSLLNVVMDLKK YKYILTRNFEALNARGGGNQVSLLNVVMDL GNQVSLLNVVMDLKKCCNHPYLFPVAAMEA R G G K K C 0 0 2 1 0 1 0 3 0 0 3 2 1 0 0 1 0 0 0 3 0 0 17 1 1770.9662 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 994 1010 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.042682 13.832 2 2.2202 1.9428 20.844 2 Median NaN NaN NaN 0 0 Median 2.2202 1.9428 20.844 2 0 Median 5156900 2012000 3144800 0 0 0 5156900 2012000 3144800 4924 515 5049 12926;12927 20161;20162 20162 2 GGGPAGAGGEAPAALR LCAVSGPRQAEGGERGGGPAGAGGEAPAAL GGPAGAGGEAPAALRGRLLCDFRRAPFAGR R G G L R G 5 1 0 0 0 0 1 6 0 0 1 0 0 0 2 0 0 0 0 0 0 0 16 0 1307.6582 Q5RKV6 Q5RKV6 78 93 EXOSC6 Exosome complex component MTR3 yes yes 2 1.5764E-08 115.33 1 2 0.75837 0.88163 NaN 1 Median 0.75837 0.88163 NaN 1 0 Median NaN NaN NaN 0 0 Median 66881000 35850000 31032000 59781000 35850000 23932000 7100200 0 7100200 4925 1814 5050 12928;12929;12930 20163;20164;20165;20166 20166 4 GGGPLILLDLNDENSNQSFHSEGSLQK RSRGRERRGRGASPRGGGPLILLDLNDENS ENSNQSFHSEGSLQKGTEPSPGGTPQPSRP R G G Q K G 0 0 3 2 0 2 2 4 1 1 5 1 0 1 1 4 0 0 0 0 0 0 27 0 2868.389 I3L1Q2;Q8WUZ0 I3L1Q2 83 109 BCL7C B-cell CLL/lymphoma 7 protein family member C yes no 3 4.1773E-08 49.25 1 1 0.89911 0.82299 52.729 2 Median 0.55206 0.56685 NaN 1 0 Median 1.4643 1.1949 NaN 1 0 Median 24016000 12092000 11924000 17801000 10035000 7765800 6214900 2057000 4157900 4926 1319 5051 12931;12932 20167;20168;20169 20169 3 GGGQIIPTAR FKILDAVVAQEPLHRGGGQIIPTARRVVYS EPLHRGGGQIIPTARRVVYSAFLMATPRLM R G G A R R 1 1 0 0 0 1 0 3 0 2 0 0 0 0 1 0 1 0 0 0 0 0 10 0 968.54033 P13639;Q8TA90;B4DPU3;B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;K7EP67;K7EJ74 B4DZB1 755 764 EEF2;U5-116KD;EFTUD2;SNRP116 Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component no no 2 6.4714E-18 143.45 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4936800 4936800 0 0 0 0 4936800 4936800 0 4927 794;1478 5052 12933;12934;12935 20170;20171;20172 20170 3 GGGQLDLLGVSLASLK MAPGVQGSLLHVPWRGGGQLDLLGVSLASL GGQLDLLGVSLASLKKQVDGERRERLLQEA R G G L K K 1 0 0 1 0 1 0 4 0 0 5 1 0 0 0 2 0 0 0 1 0 0 16 0 1526.8668 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6;B4DEY3;F8WCC1;H0Y7D3 E7EXA6 212 227 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 2 0.00015418 69.716 2 1.0799 1.1147 12.754 2 Median 1.0799 1.1147 12.754 2 0 Median NaN NaN NaN 0 0 Median 10322000 4889600 5432800 10322000 4889600 5432800 0 0 0 4928 524 5053 12936;12937 20173;20174 20173 2 GGGQSVQFTDIETLK EIETKLIKGDIYKTRGGGQSVQFTDIETLK GGGQSVQFTDIETLKQESPNGRKRRSSTVA R G G L K Q 0 0 0 1 0 2 1 3 0 1 1 1 0 1 0 1 2 0 0 1 0 0 15 0 1578.789 H7BYN4;Q02241 H7BYN4 878 892 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.0040249 54.343 1 2 0.90106 0.88431 NaN 1 Median 0.90106 0.88431 NaN 1 0 Median NaN NaN NaN 0 0 Median 24065000 13891000 10174000 20459000 10285000 10174000 3605800 3605800 0 4929 1312 5054 12938;12939;12940 20175;20176;20177 20177 2 GGGSCVLCCGDLEATALGR RRAALEAAAAAAPERGGGSCVLCCGDLEAT CVLCCGDLEATALGRCDHPVCYRCSTKMRV R G G G R C 2 1 0 1 3 0 1 5 0 0 3 0 0 0 0 1 1 0 0 1 0 0 19 0 1951.855 Q86UK7 Q86UK7 25 43 ZNF598 Zinc finger protein 598 yes yes 2 0.0066142 45.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4930 1884 5055 12941 20178 20178 1 GGHDILVR DNKNTHTLLLAGVFRGGHDILVRSRLLLLD LLAGVFRGGHDILVRSRLLLLDTVTMQVTA R G G V R S 0 1 0 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 865.477 Q9Y678;B3KW21;Q8WUI6;H0Y8X7 Q9Y678 836 843 COPG1;COPG Coatomer subunit gamma-1 yes no 2 0.038505 58.815 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4931 2151 5056 12942 20179 20179 1 GGHMDDGGYSMNFNMSSSR GGRGGSGGTRGPPSRGGHMDDGGYSMNFNM DDGGYSMNFNMSSSRGPLPVKRGPPPRSGG R G G S R G 0 1 2 2 0 0 0 4 1 0 0 0 3 1 0 4 0 0 1 0 0 0 19 0 2048.7775 H0Y6E7;H3BT71;P38159;B4E352;Q2VIN3;Q96E39;A0A1B0GUK8 H0Y6E7 128 146 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 3 2.4874E-13 110.77 2 2.3299 2.4667 8.3632 2 Median 2.3299 2.4667 8.3632 2 0 Median NaN NaN NaN 0 0 Median 63849000 21330000 42520000 63849000 21330000 42520000 0 0 0 4932 1284 5057 12943;12944 20180;20181 20181 979;980;981 2 GGHPPAIQSLINLLADNR ILQERERGGPEEGVRGGHPPAIQSLINLLA PPAIQSLINLLADNRYLTAEETDKIINYLR R G G N R Y 2 1 2 1 0 1 0 2 1 2 3 0 0 0 2 1 0 0 0 0 0 0 18 0 1885.017 Q9HCD5 Q9HCD5 336 353 NCOA5 Nuclear receptor coactivator 5 yes yes 3 0.00019718 42.633 1 1.1283 1.1906 NaN 1 Median 1.1283 1.1906 NaN 1 0 Median NaN NaN NaN 0 0 Median 4046500 2409500 1637000 4046500 2409500 1637000 0 0 0 4933 2053 5058 12945 20182;20183;20184 20183 3 GGIFQPELLSSYK VLSRDIRSQIEAMFRGGIFQPELLSSYKEG FRGGIFQPELLSSYKEGLLDQQQGDVKTGA R G G Y K E 0 0 0 0 0 1 1 2 0 1 2 1 0 1 1 2 0 0 1 0 0 0 13 0 1437.7504 A8K4P8;Q14146;Q6PCC8 A8K4P8 243 255 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 2 0.033854 43.512 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4934 738 5059 12946 20185 20185 1 GGIPNVEGAAK EFFTMLAQRRGMHQKGGIPNVEGAAKLLWS MHQKGGIPNVEGAAKLLWSEWTGASLAYYC K G G A K L 2 0 1 0 0 0 1 3 0 1 0 1 0 0 1 0 0 0 0 1 0 0 11 0 1011.5349 A0A024R2Z6;Q9BVP2 A0A024R2Z6 366 376 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.00042695 90.657 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 196720000 196720000 0 192410000 192410000 0 4305700 4305700 0 4935 125 5060 12947;12948;12949 20186;20187;20188 20187 3 GGIQELIGLIK LIMDEVDGMAGNEDRGGIQELIGLIKHTKI NEDRGGIQELIGLIKHTKIPIICMCNDRNH R G G I K H 0 0 0 0 0 1 1 3 0 3 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1139.6914 P35251 P35251 732 742 RFC1 Replication factor C subunit 1 yes yes 2 1.4269E-05 107.15 2 1 0.45895 0.4745 29.325 3 Median 0.45861 0.47419 0.093379 2 0 Median 0.95582 0.78803 NaN 1 0 Median 44116000 28459000 15657000 33211000 22432000 10779000 10905000 6026900 4878100 4936 1542 5061 12950;12951;12952 20189;20190;20191;20192;20193;20194 20190 6 GGIVDEGALLR FAQCKKGVRVVNCARGGIVDEGALLRALQS NCARGGIVDEGALLRALQSGQCAGAALDVF R G G L R A 1 1 0 1 0 0 1 3 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1098.6033 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q96RV5 O43175 237 247 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.0023569 75.378 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146680000 0 146680000 146680000 0 146680000 0 0 0 4937 1382 5062 12953;12954 20195;20196 20196 2 GGKPEPPAMPQPVPTA PKDEILPTTPISEQKGGKPEPPAMPQPVPT GKPEPPAMPQPVPTA_______________ K G G T A - 2 0 0 0 0 1 1 2 0 0 0 1 1 0 6 0 1 0 0 1 0 0 16 1 1572.797 P23396;Q53G83;E9PL09;E9PPU1;H0YEU2;Q9NQS8 P23396 228 243 RPS3 40S ribosomal protein S3 yes no 2 2.7748E-12 118.76 4 1 1.4885 1.7258 39.816 5 Median 1.4947 1.731 2.3472 4 0 Median 0.89953 0.71644 NaN 1 0 Median 975770000 398710000 577060000 965940000 393440000 572500000 9827000 5267700 4559300 4938 1511 5063 12955;12956;12957;12958;12959 20197;20198;20199;20200;20201;20202;20203;20204;20205 20200 1282 9 GGLASGGDVEPGLPVEVR ______________________________ ASGGDVEPGLPVEVRGSNGAFYKGFVKDVH M G G V R G 1 1 0 1 0 0 2 5 0 0 2 0 0 0 2 1 0 0 0 3 0 0 18 0 1707.8792 P51116 P51116 2 19 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 0.00028725 62.891 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5551000 5551000 0 5551000 5551000 0 0 0 0 4939 1593 5064 12960 20206 20206 1 GGLGYVEETSEFEAR FLRSDLIEVATRLQKGGLGYVEETSEFEAR GGLGYVEETSEFEARVISLEKLKDFGECVI K G G A R V 1 1 0 0 0 0 4 3 0 0 1 0 0 1 0 1 1 0 1 1 0 0 15 0 1642.7475 Q9UIG0 Q9UIG0 1069 1083 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 3.4872E-58 194.17 1 2 23.748 23.512 0.10175 2 Median 20.625 23.495 NaN 1 0 Median 27.344 23.529 NaN 1 0 Median 199130000 6755800 192370000 105300000 5233800 100060000 93831000 1522000 92309000 4940 2103 5065 12961;12962;12963 20207;20208;20209;20210 20207 4 GGLVSDAYGEDDFSR ______________________________ GGLVSDAYGEDDFSRLGGDEDGYEEEEDEN K G G S R L 1 1 0 3 0 0 1 3 0 0 1 0 0 1 0 2 0 0 1 1 0 0 15 0 1586.6849 J3KS14;F5H478;B7Z4X9;J3KRU5;X6R3T8;J3QLH3;A0A024R8R0;J3QQJ0;Q9UHR5 J3KS14 4 18 SAP30BP SAP30-binding protein yes no 2 0.00022163 69.451 1 1.3676 1.3609 NaN 1 Median 1.3676 1.3609 NaN 1 0 Median NaN NaN NaN 0 0 Median 7868200 4110200 3758000 7868200 4110200 3758000 0 0 0 4941 255 5066 12964 20211;20212 20211 2 GGLYSQEQAAK HFLTAVAHRLGKKKKGGLYSQEQAAKAVLA KKKKGGLYSQEQAAKAVLADWVSGKISFYI K G G A K A 2 0 0 0 0 2 1 2 0 0 1 1 0 0 0 1 0 0 1 0 0 0 11 0 1150.5619 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 376 386 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.020718 43.635 1 0.81908 0.92316 NaN 1 Median 0.81908 0.92316 NaN 1 0 Median NaN NaN NaN 0 0 Median 124450000 67340000 57115000 124450000 67340000 57115000 0 0 0 4942 291 5067 12965 20213 20213 1 GGMGSGGLATGIAGGLAGMGGIQNEK GSGSRISVSRSTSFRGGMGSGGLATGIAGG IAGGLAGMGGIQNEKETMQSLNDRLASYLD R G G E K E 3 0 1 0 0 1 1 11 0 2 2 1 2 0 0 1 1 0 0 0 0 0 26 0 2260.094 F8VZY9;B2RA03;A0A024RAY2;P05783 F8VZY9 56 81 KRT18 Keratin, type I cytoskeletal 18 yes no 2 8.6185E-28 120.63 2 1.9931 2.2504 2.0991 2 Median 1.9931 2.2504 2.0991 2 0 Median NaN NaN NaN 0 0 Median 242950000 76511000 166440000 242950000 76511000 166440000 0 0 0 4943 316 5068 12966;12967 20214;20215;20216;20217;20218;20219 20216 235;236 6 GGNETVQESNALR SSILKPPRSPLQDLRGGNETVQESNALRNK LRGGNETVQESNALRNKKNSRRVSFADTIK R G G L R N 1 1 2 0 0 1 2 2 0 0 1 0 0 0 0 1 1 0 0 1 0 0 13 0 1373.6535 Q05C46 Q05C46 39 51 CASC5 yes yes 2 0.00058019 81.799 2 1 1.2758 1.1297 NaN 1 Median NaN NaN NaN 0 0 Median 1.2758 1.1297 NaN 1 0 Median 7343600 6043900 1299600 4930900 4930900 0 2412700 1113100 1299600 4944 1685 5069 12968;12969;12970 20220;20221;20222 20220 3 GGNFGFGDSR SRQEMQEVQSSRSGRGGNFGFGDSRGGGGN SRSGRGGNFGFGDSRGGGGNFGPGPGSNFR R G G S R G 0 1 1 1 0 0 0 4 0 0 0 0 0 2 0 1 0 0 0 0 0 0 10 0 1012.4363 P22626;A0A024RA28 P22626 204 213 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 0.0013029 74.269 2 1 2.7005 3.1482 49.846 3 Plateau 2.604 2.9986 6.8857 2 0 Median 1.5224 1.2699 NaN 1 0 Median 332790000 100030000 232760000 309770000 91429000 218340000 23019000 8598000 14421000 4945 1508 5070 12971;12972;12973 20223;20224;20225;20226 20224 4 GGNLTLLHFLLGLK HGINFYDASLGTFGRGGNLTLLHFLLGLKT RGGNLTLLHFLLGLKTAADDDLVADLVVNI R G G L K T 0 0 1 0 0 0 0 3 1 0 6 1 0 1 0 0 1 0 0 0 0 0 14 0 1494.8922 O60287 O60287 335 348 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 1.7044E-05 78.548 1 1.1011 1.1797 NaN 1 Median 1.1011 1.1797 NaN 1 0 Median NaN NaN NaN 0 0 Median 37115000 18493000 18622000 37115000 18493000 18622000 0 0 0 4946 1392 5071 12974 20227 20227 0 GGNRFEPYANPTK RPAQNEKRKEKNIKRGGNRFEPYANPTKRY KRGGNRFEPYANPTKRYRAFITNIPFDVKW R G G T K R 1 1 2 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 0 0 0 13 1 1449.7001 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 57 69 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.0051051 73.499 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5723000 0 5723000 5723000 0 5723000 0 0 0 4947 1599 5072 12975;12976 20228;20229 20229 2 GGNVFAALIQDQSEEEEEEEK DEVPAPKPRGGKKTKGGNVFAALIQDQSEE ALIQDQSEEEEEEEKHPPKPAKPEKNRINK K G G E K H 2 0 1 1 0 2 7 2 0 1 1 1 0 1 0 1 0 0 0 1 0 0 21 0 2350.0448 Q8NE71;Q2L6I2;B4DNU2;Q5STZ8;A0PJ72;F5GYK6 Q8NE71 128 148 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.0774E-12 88.282 2 1.12 1.1446 NaN 1 Median 1.12 1.1446 NaN 1 0 Median NaN NaN NaN 0 0 Median 28720000 19740000 8980000 28720000 19740000 8980000 0 0 0 4948 1926 5073 12977;12978 20230;20231;20232 20230 3 GGPAEGQLQENDR FQSGETSIVISDVLKGGPAEGQLQENDRVA LKGGPAEGQLQENDRVAMVNGVSMDNVEHA K G G D R V 1 1 1 1 0 2 2 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 13 0 1369.6222 A0A087X0K9;Q6MZU1;G5E9E7;A9CQZ8;G3V1L9;Q07157;H0YLT6;H0YKB1 A0A087X0K9 50 62 TJP1;DKFZp686A1195 Tight junction protein ZO-1 yes no 2 6.2579E-06 104.79 2 1.6011 1.642 25.059 2 Median 1.6011 1.642 25.059 2 0 Median NaN NaN NaN 0 0 Median 11542000 4402900 7139500 11542000 4402900 7139500 0 0 0 4949 444 5074 12979;12980 20233;20234 20234 2 GGPASPGGLQGLETR RRMCLPDSWAMNMYRGGPASPGGLQGLETR GGPASPGGLQGLETRRLSLPSSKAKAKSLS R G G T R R 1 1 0 0 0 1 1 5 0 0 2 0 0 0 2 1 1 0 0 0 0 0 15 0 1395.7106 C9JWC4;Q8NCD3 C9JWC4 384 398 HJURP Holliday junction recognition protein yes no 2 0.00037777 81.625 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4950 1143 5075 12981 20235 20235 1 GGPEFSSALK NQLPQPDVFPLFKDKGGPEFSSALKNSHKA LFKDKGGPEFSSALKNSHKALKALLRSLVG K G G L K N 1 0 0 0 0 0 1 2 0 0 1 1 0 1 1 2 0 0 0 0 0 0 10 0 991.49746 Q9NY61 Q9NY61 267 276 AATF Protein AATF yes yes 2 0.00017611 94.85 2 2 1.218 1.185 11.095 4 Median 0.91725 1.0692 2.2213 2 0 Median 1.6061 1.294 0.11443 2 0 Median 578190000 301110000 277080000 531420000 282510000 248910000 46769000 18600000 28169000 4951 2080 5076 12982;12983;12984;12985 20236;20237;20238;20239;20240;20241;20242;20243 20237 8 GGPLQALTR QAGITETEWTSGSSKGGPLQALTRESTRGS TSGSSKGGPLQALTRESTRGSRRTPRKRVE K G G T R E 1 1 0 0 0 1 0 2 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 0 911.51886 A0A024RBE7;P42167 A0A024RBE7 240 248 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2 0.00067697 95.909 2 1 0.93234 1.031 13.003 3 Median 0.92376 1.0437 1.7272 2 0 Median 1.0053 0.83405 NaN 1 0 Median 119550000 61340000 58212000 114280000 58604000 55677000 5270800 2735900 2534900 4952 334 5077 12986;12987;12988 20244;20245;20246 20244 3 GGPNIITLADIVK KKKIKREIKILENLRGGPNIITLADIVKDP LRGGPNIITLADIVKDPVSRTPALVFEHVN R G G V K D 1 0 1 1 0 0 0 2 0 3 1 1 0 0 1 0 1 0 0 1 0 0 13 0 1309.7606 Q2I0Y7;E7EU96;B5BUH5;B2R6D7;Q5U5J2;Q8NEV1;P68400 Q2I0Y7 90 102 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha 3;Casein kinase II subunit alpha yes no 2 1.2205E-08 112.83 2 2 0.92727 0.84872 60.729 4 Median 1.309 1.3681 4.881 2 0 Median 0.60127 0.48474 16.572 2 0 Median 46604000 20433000 26171000 40835000 16600000 24234000 5769500 3832400 1937100 4953 840 5078 12989;12990;12991;12992 20247;20248;20249;20250;20251;20252;20253;20254 20248 8 GGPPFAFVEFEDPR YKYGAIRDIDLKNRRGGPPFAFVEFEDPRD RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD R G G P R D 1 1 0 1 0 0 2 2 0 0 0 0 0 3 3 0 0 0 0 1 0 0 14 0 1563.7358 J3KTL2;Q07955;Q59FA2;J3QQV5;J3KSW7 J3KTL2 52 65 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00011089 83.397 3 2 0.87908 0.85762 46.034 4 Median 1.1331 1.277 4.1961 2 0 Median 0.68782 0.57656 4.0461 2 0 Median 185890000 78587000 107300000 174730000 71989000 102740000 11155000 6597700 4557300 4954 1333 5079 12993;12994;12995;12996;12997 20255;20256;20257;20258;20259;20260;20261;20262;20263 20255 9 GGPPFAFVEFEDPRDAEDAVYGR YKYGAIRDIDLKNRRGGPPFAFVEFEDPRD EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP R G G G R D 3 2 0 3 0 0 3 3 0 0 0 0 0 3 3 0 0 0 1 2 0 0 23 1 2540.1608 J3KTL2;Q07955;Q59FA2 J3KTL2 52 74 SRSF1 Serine/arginine-rich splicing factor 1 yes no 3 3.9451E-12 89.028 2 2 1.3686 1.6492 47.064 4 Linear 1.2705 1.4598 11.229 2 0 Median 0.75252 0.65647 11.488 2 0 Median 765470000 343780000 421690000 635900000 267020000 368890000 129570000 76764000 52807000 4955 1333 5080 12998;12999;13000;13001 20264;20265;20266;20267;20268;20269;20270;20271 20264 8 GGPTVDPEELFR GFDPGASGSQHSYWKGGPTVDPEELFRKIF YWKGGPTVDPEELFRKIFGEFSSSSFGDFQ K G G F R K 0 1 0 1 0 0 2 2 0 0 1 0 0 1 2 0 1 0 0 1 0 0 12 0 1315.6408 Q59E88;Q53G26;Q96EY1;B3KM81 Q59E88 174 185 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 0.00018015 91.095 2 2 1.2796 1.7274 35.59 4 Linear 1.5659 1.6582 4.2166 2 0 Median 1.0588 0.89681 2.0327 2 0 Median 60838000 22544000 38294000 47559000 16011000 31548000 13279000 6532800 6746200 4956 1786 5081 13002;13003;13004;13005 20272;20273;20274;20275;20276;20277;20278;20279 20275 8 GGQLLVSLK VSAGGRYVKVWDMLKGGQLLVSLKNHHKTV VWDMLKGGQLLVSLKNHHKTVTCLCLSSSG K G G L K N 0 0 0 0 0 1 0 2 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 913.55967 Q8TED0;H0Y8P4 Q8TED0 237 245 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 2.2298E-05 116.25 1 0.8913 1.0034 NaN 1 Median 0.8913 1.0034 NaN 1 0 Median NaN NaN NaN 0 0 Median 70195000 38453000 31742000 70195000 38453000 31742000 0 0 0 4957 1936 5082 13006 20280;20281 20281 2 GGQQALLQHWSEYIK VPDLAQMYQLFSRVRGGQQALLQHWSEYIK GGQQALLQHWSEYIKTFGTAIVINPEKDKD R G G I K T 1 0 0 0 0 3 1 2 1 1 2 1 0 0 0 1 0 1 1 0 0 0 15 0 1756.8897 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 331 345 CUL4A Cullin-4A yes no 2;3 0.005273 41.242 3 0.97037 0.79335 8.5868 3 Plateau NaN NaN NaN 0 0 Median 0.97037 0.79335 8.5868 3 0 Plateau 20306000 10630000 9676300 0 0 0 20306000 10630000 9676300 4958 1718 5083 13007;13008;13009 20282;20283;20284;20285;20286 20284 5 GGQTHLGLPVFNTVK LEYGTKLVGGTTPGKGGQTHLGLPVFNTVK GGQTHLGLPVFNTVKEAKEQTGATASVIYV K G G V K E 0 0 1 0 0 1 0 3 1 0 2 1 0 1 1 0 2 0 0 2 0 0 15 0 1566.8518 Q6IAL5;B2R8A1;A8K4W7;P53597;B7Z438 Q6IAL5 78 92 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 3 0.021942 22.196 1 2.297 2.4585 NaN 1 Median 2.297 2.4585 NaN 1 0 Median NaN NaN NaN 0 0 Median 37008000 10449000 26559000 37008000 10449000 26559000 0 0 0 4959 743 5084 13010 20287 20287 1 GGRPNEIEPPPPEMPPWQK ACAINKVLMGRVPDRGGRPNEIEPPPPEMP NEIEPPPPEMPPWQKRQDGPQQQTGGRGGG R G G Q K R 0 1 1 0 0 1 3 2 0 1 0 1 1 0 7 0 0 1 0 0 0 0 19 1 2155.0521 I6L9E8;Q8NCA5;B4DT23;B4DY25;B3KTW4 I6L9E8 306 324 FAM98A Protein FAM98A yes no 3 8.3725E-06 54.368 2 1.1226 1.2577 8.7438 2 Median 1.1226 1.2577 8.7438 2 0 Median NaN NaN NaN 0 0 Median 40699000 16294000 24405000 40699000 16294000 24405000 0 0 0 4960 1324 5085 13011;13012 20288;20289;20290;20291;20292 20292 1001 5 GGSDDSSKDPIDVNYEK LDNLLDIEVAYSLLRGGSDDSSKDPIDVNY SDDSSKDPIDVNYEKLKTDIKVVDRDSEEA R G G E K L 0 0 1 4 0 0 1 2 0 1 0 2 0 0 1 3 0 0 1 1 0 0 17 1 1824.8014 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 780 796 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 1.2066E-09 96.143 4 2 1.1149 0.94736 19.762 5 Median 0.73216 0.84728 27.886 3 0 Median 1.1307 0.96121 2.0533 2 0 Median 162110000 86463000 75649000 90264000 51536000 38728000 71848000 34927000 36921000 4961 139 5086 13013;13014;13015;13016;13017;13018 20293;20294;20295;20296;20297;20298;20299;20300 20295 8 GGSGGGGSISGGGYGSGGGSGGR GSSSYGSGGRQSGSRGGSGGGGSISGGGYG ISGGGYGSGGGSGGRYGSGGGSKGGSISGG R G G G R Y 0 1 0 0 0 0 0 15 0 1 0 0 0 0 0 5 0 0 1 0 0 0 23 0 1740.7412 CON__P35908;P35908 CON__P35908 556 578 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 2.7545E-24 111.78 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15046000 15046000 0 8471900 8471900 0 6574100 6574100 0 + 4962 1166 5087 13019;13020 20301;20302 20301 2 GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK GGGSGGGYGGGSGSRGGSGGSHGGGSGFGG EASGSGGGYGGGSGKSSHS___________ R G G G K S 1 0 0 0 0 0 3 23 1 0 0 1 0 1 0 8 0 0 2 0 0 0 40 0 3222.2743 CON__P35527;P35527;K7EQQ3 CON__P35527 580 619 KRT9 Keratin, type I cytoskeletal 9 yes no 3 1.5967E-96 147.51 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 681750000 681750000 0 579940000 579940000 0 101820000 101820000 0 + 4963 1165 5088 13021;13022;13023 20303;20304;20305;20306 20304 4 GGSGGSYGGGGSGGGYGGGSGSR GGRGGSGGSYGRGSRGGSGGSYGGGGSGGG GGGSGGGYGGGSGSRGGSGGSYGGGSGSGG R G G S R G 0 1 0 0 0 0 0 15 0 0 0 0 0 0 0 5 0 0 2 0 0 0 23 0 1790.7204 CON__P35527;P35527;K7EQQ3 CON__P35527 491 513 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.6304E-75 173.28 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9886900 9886900 0 9886900 9886900 0 0 0 0 + 4964 1165 5089 13024 20307 20307 1 GGSISVQVNSIK SFRHEKTKKKRGSYRGGSISVQVNSIKFDS SYRGGSISVQVNSIKFDSE___________ R G G I K F 0 0 1 0 0 1 0 2 0 2 0 1 0 0 0 3 0 0 0 2 0 0 12 0 1187.651 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 684 695 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.0034382 56.043 1 1.6705 1.6435 NaN 1 Median 1.6705 1.6435 NaN 1 0 Median NaN NaN NaN 0 0 Median 19897000 7857100 12040000 19897000 7857100 12040000 0 0 0 4965 468 5090 13025 20308 20308 1 GGSPAVTLLISEK INDIKDTDVIMKRKRGGSPAVTLLISEKIS KRGGSPAVTLLISEKISVDITLALESKSSW R G G E K I 1 0 0 0 0 0 1 2 0 1 2 1 0 0 1 2 1 0 0 1 0 0 13 0 1270.7133 Q8N884 Q8N884 303 315 MB21D1 Cyclic GMP-AMP synthase yes yes 2 9.654E-05 92.866 2 2 1.5597 1.4639 2.1596 4 Median 1.3556 1.4925 2.0934 2 0 Median 1.7399 1.4486 0.83403 2 0 Median 208960000 81148000 127810000 116770000 49620000 67145000 92193000 31527000 60666000 4966 1914 5091 13026;13027;13028;13029 20309;20310;20311;20312;20313;20314;20315;20316 20316 8 GGSTTGSQFLEQFK VSMLGKGFGDVGEAKGGSTTGSQFLEQFKT KGGSTTGSQFLEQFKTAQALAQLAAQHSQS K G G F K T 0 0 0 0 0 2 1 3 0 0 1 1 0 2 0 2 2 0 0 0 0 0 14 0 1485.71 B4DZJ6;B4DYY5;F8W726;Q14157 B4DZJ6 268 281 UBAP2L Ubiquitin-associated protein 2-like yes no 2 2.6626E-06 104.82 2 2.2724 2.4085 NaN 1 Median 2.2724 2.4085 NaN 1 0 Median NaN NaN NaN 0 0 Median 32315000 6842300 25473000 32315000 6842300 25473000 0 0 0 4967 1052 5092 13030;13031 20317;20318;20319;20320 20320 4 GGSWIQEINVAEK PSFDWKNFEQKMLKKGGSWIQEINVAEKNW KKGGSWIQEINVAEKNWYPRQKICYAKRKL K G G E K N 1 0 1 0 0 1 2 2 0 2 0 1 0 0 0 1 0 1 0 1 0 0 13 0 1429.7201 P78527 P78527 4024 4036 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0003204 79.974 2 0.63355 0.63855 2.1658 2 Median 0.63355 0.63855 2.1658 2 0 Median NaN NaN NaN 0 0 Median 57601000 30081000 27521000 57601000 30081000 27521000 0 0 0 4968 1665 5093 13032;13033 20321;20322;20323 20323 3 GGTILAPTVSAK SQVDVMQQATNAILRGGTILAPTVSAKTIA ILRGGTILAPTVSAKTIAEQLAEKINAKLN R G G A K T 2 0 0 0 0 0 0 2 0 1 1 1 0 0 1 1 2 0 0 1 0 0 12 0 1113.6394 A8K6X3;A0A0C4DG89;Q7L014 A8K6X3 884 895 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0089727 55.721 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8593300 0 8593300 8593300 0 8593300 0 0 0 4969 511 5094 13034 20324 20324 1 GGTLQIQLAK DLKKCMSVLNKTKWKGGTLQIQLAKESFLH KTKWKGGTLQIQLAKESFLHRLAQEREAAK K G G A K E 1 0 0 0 0 2 0 2 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1027.6026 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H797;F5H692;F5H532;F5H0I5;Q7Z607;F5H7D5 A0A024R250 79 88 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.0021232 70.525 2 1.5308 1.2129 2.6623 2 Median NaN NaN NaN 0 0 Median 1.5308 1.2129 2.6623 2 0 Median 6180000 2237600 3942400 0 0 0 6180000 2237600 3942400 4970 104 5095 13035;13036 20325;20326;20327 20327 3 GGTPSAFDR LGYDTRVTILGHVQRGGTPSAFDRILASRM LGHVQRGGTPSAFDRILASRMGVEAVIALL R G G D R I 1 1 0 1 0 0 0 2 0 0 0 0 0 1 1 1 1 0 0 0 0 0 9 0 906.41954 A0A024R0Y5;P08237;A0A0S2Z4A1;B4E162;P17858;Q7L2M7;Q9BSP4;Q01813;B1APP6;V9GY25 Q01813 311 319 PFKM;PFKL;PFKP ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type;ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type no no 2 0.0018938 79.474 1 1.8646 2.1535 NaN 1 Median 1.8646 2.1535 NaN 1 0 Median NaN NaN NaN 0 0 Median 55731000 20473000 35258000 55731000 20473000 35258000 0 0 0 4971 1677;61;1495 5096 13037 20328 20328 1 GGTVADLDEQDEETVTAGGK KNVNLKKDSENTPVKGGTVADLDEQDEETV DLDEQDEETVTAGGKEDEDPAKGDQSRSVD K G G G K E 2 0 0 3 0 1 3 4 0 0 1 1 0 0 0 0 3 0 0 2 0 0 20 0 1990.8967 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 402 421 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 1.0595E-64 176.89 2 0.85601 0.87948 0.5276 2 Median 0.85601 0.87948 0.5276 2 0 Median NaN NaN NaN 0 0 Median 43291000 23062000 20229000 43291000 23062000 20229000 0 0 0 4972 1798 5097 13038;13039 20329;20330;20331;20332;20333;20334 20330 6 GGTVADLDEQDEETVTAGGKEDEDPAK KNVNLKKDSENTPVKGGTVADLDEQDEETV ETVTAGGKEDEDPAKGDQSRSVDLGEDNVT K G G A K G 3 0 0 5 0 1 5 4 0 0 1 2 0 0 1 0 3 0 0 2 0 0 27 1 2775.2206 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 402 428 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 3 7.3375E-19 76.777 2 2 1.1702 1.178 22.728 4 Median 0.83732 0.98063 6.5304 2 0 Median 1.6859 1.4328 8.3059 2 0 Median 90433000 42375000 48058000 65180000 33078000 32103000 25252000 9297100 15955000 4973 1798 5098 13040;13041;13042;13043 20335;20336;20337;20338;20339;20340;20341;20342;20343 20339 9 GGVILVSHDER METIEALGRALNNFRGGVILVSHDERFIRL NNFRGGVILVSHDERFIRLVCRELWVCEGG R G G E R F 0 1 0 1 0 0 1 2 1 1 1 0 0 0 0 1 0 0 0 2 0 0 11 0 1180.62 B4DRU9;A0A0S2Z5L1;Q9NUQ8 B4DRU9 617 627 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 0.053334 43.282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1974400 0 1974400 1974400 0 1974400 0 0 0 4974 583 5099 13044 20344 20344 1 GGVNDNFQGVLQNVR FTRDLASIARLRIAKGGVNDNFQGVLQNVR GGVNDNFQGVLQNVRFVFGTTPEDILRNKG K G G V R F 0 1 3 1 0 2 0 3 0 0 1 0 0 1 0 0 0 0 0 3 0 0 15 0 1615.8067 A0PJG0;CON__Q28194;A0A024R9Q1;P07996 A0PJG0 202 216 THBS1 Thrombospondin-1 yes no 2 0.0085426 49.5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 4975 286 5100 13045;13046 20345;20346 20345 2 GGVQVPAVDISSSLGGR SGVNVNAKGLDLGGRGGVQVPAVDISSSLG VQVPAVDISSSLGGRAVEVQGPSLESGDHG R G G G R A 1 1 0 1 0 1 0 4 0 1 1 0 0 0 1 3 0 0 0 3 0 0 17 0 1597.8424 Q09666;B4DTV0 Q09666 271 287 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 6.7271E-05 72.496 2 2 1.686 1.8513 37.076 4 Linear 1.612 1.7538 2.0022 2 0 Median 1.1145 0.93133 10.669 2 0 Median 105960000 43996000 61961000 87905000 35741000 52163000 18052000 8254800 9797300 4976 1696 5101 13047;13048;13049;13050 20347;20348;20349;20350;20351;20352 20349 6 GGVSAVAGGVTAVGSAVVNK TAVTTVPSMGIGLVKGGVSAVAGGVTAVGS VAGGVTAVGSAVVNKVPLTGKKKDKSD___ K G G N K V 4 0 1 0 0 0 0 5 0 0 0 1 0 0 0 2 1 0 0 6 0 0 20 0 1698.9264 Q8WUH6 Q8WUH6 85 104 TMEM263 Transmembrane protein 263 yes yes 2 3.816E-10 84.759 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7124800 0 7124800 7124800 0 7124800 0 0 0 4977 1939 5102 13051 20353 20353 1 GGYHLVK GSDDDEQEDPNDYCKGGYHLVKIGDLFNGR EDPNDYCKGGYHLVKIGDLFNGRYHVIRKL K G G V K I 0 0 0 0 0 0 0 2 1 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 772.42317 Q96SB4;A8K8B2;H3BLV9;D6RBM8 Q96SB4 65 71 SRPK1 SRSF protein kinase 1 yes no 2 0.02838 72.021 1 2.4234 2.462 NaN 1 Median 2.4234 2.462 NaN 1 0 Median NaN NaN NaN 0 0 Median 27868000 7731200 20137000 27868000 7731200 20137000 0 0 0 4978 1988 5103 13052 20354 20354 1 GGYTSGTFR RVQVVGTYRCLPGKKGGYTSGTFRTVLIAC CLPGKKGGYTSGTFRTVLIACNVKQMSKDA K G G F R T 0 1 0 0 0 0 0 3 0 0 0 0 0 1 0 1 2 0 1 0 0 0 9 0 944.43519 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 249 257 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.00067697 95.909 2 1.1882 1.2415 2.6147 2 Median 1.1882 1.2415 2.6147 2 0 Median NaN NaN NaN 0 0 Median 43656000 19605000 24051000 43656000 19605000 24051000 0 0 0 4979 568 5104 13053;13054 20355;20356 20355 2 GHAGSVDSIAVDGSGTK WNVERNKVKALHCCRGHAGSVDSIAVDGSG AGSVDSIAVDGSGTKFCSGSWDKMLKIWST R G H T K F 2 0 0 2 0 0 0 4 1 1 0 1 0 0 0 3 1 0 0 2 0 0 17 0 1556.7431 Q53T99;Q9GZL7 Q53T99 187 203 WDR12 Ribosome biogenesis protein WDR12 yes no 2;3 1.0474E-34 203.87 5 4 1.0702 1.0254 10.195 8 Median 0.83295 0.89693 8.2687 4 0 Median 1.3521 1.0826 3.2281 4 0 Median 201090000 108050000 93045000 162010000 90740000 71272000 39081000 17307000 21773000 4980 1792 5105 13055;13056;13057;13058;13059;13060;13061;13062;13063 20357;20358;20359;20360;20361;20362;20363;20364;20365;20366;20367;20368;20369;20370 20361 13 GHALLILRPEELGFLR YIHRVGRTARGLNGRGHALLILRPEELGFL HALLILRPEELGFLRYLKQSKVPLSEFDFS R G H L R Y 1 2 0 0 0 0 2 2 1 1 5 0 0 1 1 0 0 0 0 0 0 0 16 1 1833.0625 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452;Q59FR7 Q4ZG72 400 415 DDX18 ATP-dependent RNA helicase DDX18 yes no 3;4 2.0825E-07 98.694 19 4 0.97149 1.0563 21.928 13 Median 0.97116 1.0506 10.862 9 0 Median 1.4899 1.2291 39.329 4 0 Median 318810000 140440000 178360000 143480000 62520000 80959000 175330000 77923000 97405000 4981 303 5106 13064;13065;13066;13067;13068;13069;13070;13071;13072;13073;13074;13075;13076;13077;13078;13079;13080;13081;13082;13083;13084;13085;13086 20371;20372;20373;20374;20375;20376;20377;20378;20379;20380;20381;20382;20383;20384;20385;20386;20387;20388;20389;20390;20391;20392;20393;20394;20395;20396;20397;20398;20399;20400;20401;20402;20403;20404;20405 20374 34 GHAVGDIPGVR IEENDEVLVAGFGRKGHAVGDIPGVRFKVV FGRKGHAVGDIPGVRFKVVKVANVSLLALY K G H V R F 1 1 0 1 0 0 0 3 1 1 0 0 0 0 1 0 0 0 0 2 0 0 11 0 1076.5727 A8K517;P62266;D6RD47 A8K517 109 119 RPS23 40S ribosomal protein S23 yes no 2;3 2.0681E-08 122.13 5 4 1.129 1.1399 20.934 8 Median 0.79339 0.94419 5.454 4 0 Median 1.5757 1.3751 2.8638 4 0 Median 9463600000 4844900000 4618700000 8421900000 4447700000 3974300000 1041700000 397230000 644460000 4982 744 5107 13087;13088;13089;13090;13091;13092;13093;13094;13095 20406;20407;20408;20409;20410;20411;20412;20413;20414;20415;20416;20417;20418;20419;20420;20421;20422;20423;20424;20425;20426;20427;20428;20429 20425 24 GHFEAFGTLTDCVVVVNPQTK FIGGLNVQTSESGLRGHFEAFGTLTDCVVV GTLTDCVVVVNPQTKRSRCFGFVTYSNVEE R G H T K R 1 0 1 1 1 1 1 2 1 0 1 1 0 2 1 0 3 0 0 4 0 0 21 0 2318.1365 Q13151 Q13151 25 45 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 3 4.2022E-07 50.237 1 0.60003 0.48156 NaN 1 Median NaN NaN NaN 0 0 Median 0.60003 0.48156 NaN 1 0 Median 7651200 4418000 3233200 0 0 0 7651200 4418000 3233200 4983 1706 5108 13096 20430;20431 20430 2 GHFNIQPNK VEFRGPSGLLTYTGKGHFNIQPNKKSPPEP LTYTGKGHFNIQPNKKSPPEPRVAKKLGMI K G H N K K 0 0 2 0 0 1 0 1 1 1 0 1 0 1 1 0 0 0 0 0 0 0 9 0 1053.5356 H7C0R7;Q9UHQ9 H7C0R7 91 99 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 0.0070421 62.659 1 2.8464 2.8095 NaN 1 Median 2.8464 2.8095 NaN 1 0 Median NaN NaN NaN 0 0 Median 9295000 2174400 7120600 9295000 2174400 7120600 0 0 0 4984 1315 5109 13097 20432 20432 1 GHLDALTADVK EHKEKKYEMDFGIWKGHLDALTADVKEKMY GIWKGHLDALTADVKEKMYNVLLFVDGGWM K G H V K E 2 0 0 2 0 0 0 1 1 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1138.5982 P57740;B3KMK0 P57740 804 814 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.0074689 52.549 1 1.3975 1.1658 NaN 1 Median NaN NaN NaN 0 0 Median 1.3975 1.1658 NaN 1 0 Median 1719800 715620 1004100 0 0 0 1719800 715620 1004100 4985 1621 5110 13098 20433 20433 1 GHLENNPALEK VVLMGRNTMMRKAIRGHLENNPALEKLLPH KAIRGHLENNPALEKLLPHIRGNVGFVFTK R G H E K L 1 0 2 0 0 0 2 1 1 0 2 1 0 0 1 0 0 0 0 0 0 0 11 0 1220.6149 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;F8VW21;G3V210;F8VZS0;Q8NHW5;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 67 77 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2;3 4.7377E-80 234.67 3 2 0.99062 1.0962 22.39 5 Median 1.0717 1.1682 7.5756 3 0 Median 0.92974 0.79301 3.9814 2 0 Median 1502100000 745140000 756950000 1352000000 668550000 683430000 150120000 76596000 73525000 4986 345 5111 13099;13100;13101;13102;13103 20434;20435;20436;20437;20438;20439;20440;20441;20442 20438 9 GHLSGLAK LQDAQDEKEQLNEYKGHLSGLAKRAKAVVQ EQLNEYKGHLSGLAKRAKAVVQLKPRHPAH K G H A K R 1 0 0 0 0 0 0 2 1 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 781.44464 Q15149 Q15149 916 923 PLEC Plectin yes yes 2 0.039038 47.743 1 1 2.2032 2.0277 43.326 2 Median 1.4905 1.4927 NaN 1 0 Median 3.2568 2.7546 NaN 1 0 Median 17744000 7636000 10108000 15689000 7070600 8618600 2054900 565400 1489500 4987 1754 5112 13104;13105 20443;20444 20443 2 GHNGWVTQIATTPQFPDMILSASR ______________________________ ATTPQFPDMILSASRDKTIIMWKLTRDETN K G H S R D 2 1 1 1 0 2 0 2 1 2 1 0 1 1 2 2 3 1 0 1 0 0 24 0 2626.2962 E9KL35;P63244;J3KPE3;D6RAC2;D6RHH4;D6REE5;D6RBD0;D6RFZ9;D6RAU2;E9PD14;B4E0C3;D6RGK8;D6R909;B4DWC6;D6RHJ5;I3QNU9;D6RDI0 E9KL35 13 36 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3 0.052111 9.5865 1 1.977 1.7156 NaN 1 Median NaN NaN NaN 0 0 Median 1.977 1.7156 NaN 1 0 Median 2422400 754090 1668300 0 0 0 2422400 754090 1668300 4988 1227 5113 13106 20445 20445 1 GHNQPCLLVGSGR LAIGAKTYKMRYGNRGHNQPCLLVGSGRCF NRGHNQPCLLVGSGRCFLTSQNHGFAVETD R G H G R C 0 1 1 0 1 1 0 3 1 0 2 0 0 0 1 1 0 0 0 1 0 0 13 0 1393.6885 Q53SY7;F8VPD4;P27708 Q53SY7 201 213 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.034872 53.683 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4989 1259 5114 13107 20446 20446 1 GHPEFSTNR QDGIAPRMFKALIGKGHPEFSTNRQQDAQE KALIGKGHPEFSTNRQQDAQEFFLHLINMV K G H N R Q 0 1 1 0 0 0 1 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 9 0 1043.4785 A0A140VJZ1;P45974 A0A140VJZ1 424 432 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.011876 65.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2774000 2774000 0 2774000 2774000 0 0 0 0 4990 613 5115 13108 20447 20447 1 GHQLLEEVTQGDMSAADTFLSDLPR ADEGETGMFSLSTIRGHQLLEEVTQGDMSA GDMSAADTFLSDLPRDDIYVSDVEDDGDDT R G H P R D 2 1 0 3 0 2 2 2 1 0 4 0 1 1 1 2 2 0 0 1 0 0 25 0 2729.2967 Q8IY81;B4DKU3 Q8IY81 428 452 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 3 9.3956E-13 72.302 2 1.3554 1.4087 12.805 2 Median 1.3554 1.4087 12.805 2 0 Median NaN NaN NaN 0 0 Median 40808000 18306000 22502000 40808000 18306000 22502000 0 0 0 4991 1898 5116 13109;13110 20448;20449;20450;20451;20452;20453 20449 1741 6 GHQLLSADVDIK KGRLQILHIHTARMRGHQLLSADVDIKELA RMRGHQLLSADVDIKELAVETKNFSGAELE R G H I K E 1 0 0 2 0 1 0 1 1 1 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1294.6881 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;B4DGR3 I3L0N3 411 422 NSF Vesicle-fusing ATPase yes no 2 0.0014749 77.64 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9177500 0 9177500 9177500 0 9177500 0 0 0 4992 1096 5117 13111;13112;13113 20454;20455;20456 20455 3 GHQLSITCLVVTPDDSAIFSAAK KEIQAPASADIRVLRGHQLSITCLVVTPDD LVVTPDDSAIFSAAKDCSIIKWSVESGRKL R G H A K D 3 0 0 2 1 1 0 1 1 2 2 1 0 1 1 3 2 0 0 2 0 0 23 0 2429.2261 O43818 O43818 144 166 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 3 9.9911E-09 61.141 2 2 0.95169 0.86411 10.567 4 Median 0.77142 0.77473 9.1194 2 0 Median 1.1214 0.90784 0.66061 2 0 Median 63849000 33936000 29912000 33567000 19383000 14184000 30281000 14553000 15728000 4993 1389 5118 13114;13115;13116;13117 20457;20458;20459;20460;20461;20462;20463;20464;20465;20466;20467 20465 11 GHRIEEVPELPLVVEDK SALAASALPALVMSKGHRIEEVPELPLVVE RIEEVPELPLVVEDKVEGYKKTKEAVLLLK K G H D K V 0 1 0 1 0 0 4 1 1 1 2 1 0 0 2 0 0 0 0 3 0 0 17 1 1958.0473 P36578;Q59GY2;H3BM89;B4DFI6;Q53G74;B4DMJ2 P36578 141 157 RPL4 60S ribosomal protein L4 yes no 3 0.00075977 39.385 2 1.0938 0.92659 7.4648 2 Median NaN NaN NaN 0 0 Median 1.0938 0.92659 7.4648 2 0 Median 16620000 7874300 8745600 0 0 0 16620000 7874300 8745600 4994 1548 5119 13118;13119 20468;20469;20470;20471 20469 4 GHSLSDGLEEVQK VVSELGPIVQFVKAKGHSLSDGLEEVQKAE AKGHSLSDGLEEVQKAEMKAYMELVNNMLL K G H Q K A 0 0 0 1 0 1 2 2 1 0 2 1 0 0 0 2 0 0 0 1 0 0 13 0 1397.6787 C9JNK6;C9JAZ1;B7Z9F3;O75431;B3KM74 C9JNK6 40 52 MTX2 Metaxin-2 yes no 2 6.0764E-24 159.83 3 1.4845 1.5229 NaN 1 Median 1.4845 1.5229 NaN 1 0 Median NaN NaN NaN 0 0 Median 23220000 12353000 10867000 23220000 12353000 10867000 0 0 0 4995 1107 5120 13120;13121;13122 20472;20473;20474 20474 3 GHSSDSNPAICR KLPSGVSAKLKRWKKGHSSDSNPAICRHRQ WKKGHSSDSNPAICRHRQAARSRFFSRPSG K G H C R H 1 1 1 1 1 0 0 1 1 1 0 0 0 0 1 3 0 0 0 0 0 0 12 0 1299.5626 B3KMR5;Q5JTH9;A0A087X1U8;H7C1M8;A0A087WYW2 B3KMR5 21 32 RRP12 RRP12-like protein yes no 2 2.2866E-05 102.06 1 1.3841 1.4517 NaN 1 Median 1.3841 1.4517 NaN 1 0 Median NaN NaN NaN 0 0 Median 4341800 1763600 2578200 4341800 1763600 2578200 0 0 0 4996 907 5121 13123 20475;20476 20475 2 GHSVEEALR AQAATGFIIDPKANKGHSVEEALRAAVIGP DPKANKGHSVEEALRAAVIGPDVFAKLLSA K G H L R A 1 1 0 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 996.49886 A0A075B730;A0A087X1U6;P58107 A0A075B730 636 644 EPPK1 Epiplakin no no 2 0.00010242 99.802 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13861000 0 13861000 13861000 0 13861000 0 0 0 4997 397;1622 5122 13124 20477 20477 1 GHSVLPLEEAVEGFK QMPICVVCDRSREHRGHSVLPLEEAVEGFK GHSVLPLEEAVEGFKEQIQNQLDHLKRVKD R G H F K E 1 0 0 0 0 0 3 2 1 0 2 1 0 1 1 1 0 0 0 2 0 0 15 0 1610.8304 P14373;Q59EC6;A0A0G2JIZ4 P14373 126 140 TRIM27 Zinc finger protein RFP yes no 2;3 0.00022333 68.893 2 1 1.462 1.382 76.465 2 Median 0.79407 0.80479 NaN 1 0 Median 2.6917 2.3731 NaN 1 0 Median 9999400 3962500 6036900 9061500 3651400 5410100 937840 311060 626790 4998 1480 5123 13125;13126;13127 20478;20479;20480 20478 3 GHTSFVNSCYPAR AVWDSETGERVKRLKGHTSFVNSCYPARRG LKGHTSFVNSCYPARRGPQLVCTGSDDGTV K G H A R R 1 1 1 0 1 0 0 1 1 0 0 0 0 1 1 2 1 0 1 1 0 0 13 0 1494.6674 B2R9I9;A0MNP2;Q96DI7 B2R9I9 149 161 WDR57;SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2 0.0020554 68.893 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4999 643 5124 13128 20481 20481 1 GHVAALDWVTK NYSRTGRHLAFGGRRGHVAALDWVTKKLMC GGRRGHVAALDWVTKKLMCEINVMEAVRDI R G H T K K 2 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 1 1 0 2 0 0 11 0 1195.635 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 217 227 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 7.4096E-10 126.31 1 2 1.1697 0.94716 3.0737 2 Median NaN NaN NaN 0 0 Median 1.1697 0.94716 3.0737 2 0 Median 47600000 9946500 37654000 26620000 0 26620000 20981000 9946500 11034000 5000 809 5125 13129;13130;13131 20482;20483;20484 20484 3 GHVDILAPTVQELAALEK VTYGQKRAAGGGSYKGHVDILAPTVQELAA DILAPTVQELAALEKEAQTSFLHLGYLPNQ K G H E K E 3 0 0 1 0 1 2 1 1 1 3 1 0 0 1 0 1 0 0 2 0 0 18 0 1903.0415 F1T0B3;A0A087X2G1;A3RJH1;Q92499 F1T0B3 622 639 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 7.8117E-23 98.573 2 1.0171 1.12 5.0498 2 Median 1.0171 1.12 5.0498 2 0 Median NaN NaN NaN 0 0 Median 111540000 54841000 56696000 111540000 54841000 56696000 0 0 0 5001 452 5126 13132;13133 20485;20486;20487;20488 20488 4 GHVELSEAR VLCAHGGRMFLKDLRGHVELSEARLRDVLQ FLKDLRGHVELSEARLRDVLQRAGPERFLL R G H A R L 1 1 0 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 996.49886 Q96H79 Q96H79 28 36 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 2 0.00054128 91.069 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5203600 0 5203600 5203600 0 5203600 0 0 0 5002 1971 5127 13134;13135 20489;20490 20489 2 GHVFEESQVAGTPMFVVK EQVVGGIYGVLNRKRGHVFEESQVAGTPMF FEESQVAGTPMFVVKAYLPVNESFGFTADL R G H V K A 1 0 0 0 0 1 2 2 1 0 0 1 1 2 1 1 1 0 0 4 0 0 18 0 1960.9717 P13639;Q8TA90;B4DPU3 P13639 768 785 EEF2 Elongation factor 2 yes no 3 5.4111E-06 71.909 1 5.1696 5.6698 NaN 1 Median 5.1696 5.6698 NaN 1 0 Median NaN NaN NaN 0 0 Median 41073000 6095700 34978000 41073000 6095700 34978000 0 0 0 5003 1478 5128 13136 20491 20491 1226 1 GHVQPIR MTKKRRNNGRAKKGRGHVQPIRCTNCARCV NGRAKKGRGHVQPIRCTNCARCVPKDKAIK R G H I R C 0 1 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 1 0 0 7 0 805.45587 A0A024RB14;P62854;Q5JNZ5;Q75MH1 A0A024RB14 16 22 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 2 0.018615 109.88 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16614000 0 16614000 16614000 0 16614000 0 0 0 5004 319 5129 13137;13138 20492;20493 20493 2 GHVTQDAPIPGSPLYTIK ADCVSAVYTVLARRRGHVTQDAPIPGSPLY TQDAPIPGSPLYTIKAFIPAIDSFGFETDL R G H I K A 1 0 0 1 0 1 0 2 1 2 1 1 0 0 3 1 2 0 1 1 0 0 18 0 1892.9996 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 806 823 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.0018893 32.627 1 2 0.98617 1.1037 24.305 3 Plateau 0.98617 1.1037 NaN 1 0 Median 0.90516 0.73243 7.7858 2 0 Median 98186000 49594000 48592000 84072000 42165000 41907000 14115000 7429700 6685000 5005 794 5130 13139;13140;13141 20494;20495;20496;20497 20497 4 GHYTEGAELVDAVLDVVR NFVFGQSGAGNNWAKGHYTEGAELVDAVLD TEGAELVDAVLDVVRKEAESCDCLQGFQLT K G H V R K 2 1 0 2 0 0 2 2 1 0 2 0 0 0 0 0 1 0 1 4 0 0 18 0 1941.9796 P04350;B4DE77;B4DJ43;M0R278;M0R1I1;Q9BUF5;K7ESM5;B3KS31;K7EL29;K7ES63 P04350 104 121 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain no no 2;3 8.7166E-31 120.63 3 1.6611 1.7845 11.394 3 Plateau 1.6611 1.7845 11.394 3 0 Plateau NaN NaN NaN 0 0 Median 48033000 18888000 29144000 48033000 18888000 29144000 0 0 0 5006 1441;2004 5131 13142;13143;13144 20498;20499;20500;20501;20502 20498 5 GHYTEGAELVDSVLDVVR NFVFGQSGAGNNWAKGHYTEGAELVDSVLD TEGAELVDSVLDVVRKEAESCDCLQGFQLT K G H V R K 1 1 0 2 0 0 2 2 1 0 2 0 0 0 0 1 1 0 1 4 0 0 18 0 1957.9745 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;Q5ST81;B7ZAK1;B4DMJ5;G3V2A3;Q8IZ29;P68371;Q8N6N5;Q8IWP6;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;A5D907;A5D906;A1L195;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3 Q5JP53 86 103 TUBB;TUBB3;TUBB2C;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain no no 2;3 4.0239E-64 137.61 18 3 1.4999 1.5233 20.289 17 Median 1.5235 1.6629 11.355 14 0 Median 1.2137 1.0097 3.182 3 0 Median 794480000 318550000 475930000 651700000 251860000 399850000 142770000 66690000 76082000 5007 1452;1660;1723;502 5132 13145;13146;13147;13148;13149;13150;13151;13152;13153;13154;13155;13156;13157;13158;13159;13160;13161;13162;13163;13164;13165 20503;20504;20505;20506;20507;20508;20509;20510;20511;20512;20513;20514;20515;20516;20517;20518;20519;20520;20521;20522;20523;20524;20525;20526;20527;20528;20529;20530;20531;20532;20533;20534;20535;20536;20537;20538;20539;20540;20541;20542;20543;20544;20545 20545 43 GIAFPTSISVNNCVCHFSPLK EETGKIFKKEKEMKKGIAFPTSISVNNCVC SISVNNCVCHFSPLKSDQDYILKEGDLVKI K G I L K S 1 0 2 0 2 0 0 1 1 2 1 1 0 2 2 3 1 0 0 2 0 0 21 0 2347.1453 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;F8VR77;H0YIN7;F8W0A3;F8VZ69 A8K6Y1 73 93 PA2G4 Proliferation-associated protein 2G4 yes no 3 6.688E-13 83.213 2 1 1.4815 1.1635 NaN 1 Median NaN NaN NaN 0 0 Median 1.4815 1.1635 NaN 1 0 Median 23619000 1646800 21972000 19670000 0 19670000 3948800 1646800 2302100 5008 328 5133 13166;13167;13168 20546;20547;20548 20547 3 GIAHGAVVK CNFMAVTENELECHRGIAHGAVVKCPMVTS ELECHRGIAHGAVVKCPMVTSDIAQRKTQK R G I V K C 2 0 0 0 0 0 0 2 1 1 0 1 0 0 0 0 0 0 0 2 0 0 9 0 850.50249 A7E234;Q9H582;Q9NZF0;A0A087WZL9;Q569I6 A7E234 544 552 ZNF644 Zinc finger protein 644 yes no 2 0.010529 63.148 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5009 693 5134 13169 20549 20549 1 GIALWGGEK RWSPKGTYLATFHQRGIALWGGEKFKQIQR ATFHQRGIALWGGEKFKQIQRFSHQGVQLI R G I E K F 1 0 0 0 0 0 1 3 0 1 1 1 0 0 0 0 0 1 0 0 0 0 9 0 929.49707 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q86UM1;C9JQN7 Q96G38 165 173 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 2 0.0066419 63.673 2 1.5089 1.5843 5.7416 2 Median 1.5089 1.5843 5.7416 2 0 Median NaN NaN NaN 0 0 Median 32950000 12844000 20107000 32950000 12844000 20107000 0 0 0 5010 241 5135 13170;13171 20550;20551 20551 2 GIAYIEFK DAAEIRLVSKDGKSKGIAYIEFKTEADAEK SKDGKSKGIAYIEFKTEADAEKTFEEKQGT K G I F K T 1 0 0 0 0 0 1 1 0 2 0 1 0 1 0 0 0 0 1 0 0 0 8 0 939.50657 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 353 360 NCL Nucleolin yes no 1;2 0.0068997 87.323 3 2 1.0451 1.1321 53.924 5 Median 1.1145 1.2225 6.9001 3 0 Median 0.5706 0.45668 5.1828 2 0 Median 584870000 279890000 304980000 559490000 263050000 296430000 25384000 16836000 8547700 5011 151 5136 13172;13173;13174;13175;13176 20552;20553;20554;20555;20556;20557;20558;20559;20560 20555 8 GICEMELLDGK LVGATADDTEAELIRGICEMELLDGKQTLA ELIRGICEMELLDGKQTLAAFVPLLLKVCN R G I G K Q 0 0 0 1 1 0 2 2 0 1 2 1 1 0 0 0 0 0 0 0 0 0 11 0 1263.5839 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77 B3KMS0 998 1008 NCAPD2 Condensin complex subunit 1 yes no 2 7.5769E-05 94.692 2 1 1.1355 1.2202 14.423 3 Median 1.057 1.1215 11.928 2 0 Median 1.6991 1.3734 NaN 1 0 Median 61532000 31788000 29744000 58555000 30473000 28081000 2977400 1315000 1662400 5012 908 5137;5138 13177;13178;13179 20561;20562;20563;20564;20565;20566 20561 738 6 GIDEGPEGLK TGRVPKKALGITLIKGIDEGPEGLKLISDI ITLIKGIDEGPEGLKLISDIIREKMGIDIS K G I L K L 0 0 0 1 0 0 2 3 0 1 1 1 0 0 1 0 0 0 0 0 0 0 10 0 1013.5029 Q8N335;C9K0P5;C9JFA7 Q8N335 123 132 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein yes no 2 0.046562 44.753 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5013 1906 5139 13180 20567 20567 1 GIDIHGVPYVINVTLPDEK KGDVRFLICTDVAARGIDIHGVPYVINVTL HGVPYVINVTLPDEKQNYVHRIGRVGRAER R G I E K Q 0 0 1 2 0 0 1 2 1 3 1 1 0 0 2 0 1 0 1 3 0 0 19 0 2078.1048 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 497 515 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 4.3144E-06 68.625 2 2 1.3116 1.4246 12.251 4 Linear 1.2476 1.3989 1.5681 2 0 Median 1.4088 1.1441 6.5914 2 0 Median 223540000 96376000 127170000 168670000 73841000 94827000 54874000 22535000 32339000 5014 452 5140 13181;13182;13183;13184 20568;20569;20570;20571;20572;20573;20574;20575 20570 8 GIDSDDVQDNSQLK RSGRISSTPTTETIRGIDSDDVQDNSQLKA RGIDSDDVQDNSQLKASTQKAANLSEKHSL R G I L K A 0 0 1 4 0 2 0 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 14 0 1532.6954 Q96QE3;H0UIC2;A0A075B754 Q96QE3 611 624 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.00023278 79.82 1 1.6235 1.6837 NaN 1 Median 1.6235 1.6837 NaN 1 0 Median NaN NaN NaN 0 0 Median 11300000 4778000 6521800 11300000 4778000 6521800 0 0 0 5015 1984 5141 13185 20576 20576 1 GIDVQQVSLVINYDLPTNR SGSSRVLITTDLLARGIDVQQVSLVINYDL QQVSLVINYDLPTNRENYIHRIGRGGRFGR R G I N R E 0 1 2 2 0 2 0 1 0 2 2 0 0 0 1 1 1 0 1 3 0 0 19 0 2143.1273 A8K7F6;P60842;A8K088;B4DNH2;E7EQG2;Q14240;Q9NZE6;Q96B07 A8K7F6 335 353 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 1.5267E-39 153.09 2 2 1.6374 1.5998 35.297 4 Median 1.8535 2.098 0.40994 2 0 Median 1.3852 1.1464 9.2015 2 0 Median 244700000 92335000 152370000 206150000 75204000 130950000 38550000 17131000 21419000 5016 770 5142 13186;13187;13188;13189 20577;20578;20579;20580;20581;20582;20583;20584 20577 8 GIDYDFPSLILQK FKKKERLLRKKLAKKGIDYDFPSLILQKTE KKGIDYDFPSLILQKTESISKTNRQTSTKG K G I Q K T 0 0 0 2 0 1 0 1 0 2 2 1 0 1 1 1 0 0 1 0 0 0 13 0 1507.7922 Q9BYG3;C9J808;C9J6C5 Q9BYG3 180 192 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 5.0152E-06 106.37 2 2 1.1068 1.093 4.6133 4 Median 0.91436 1.049 0.59749 2 0 Median 1.3328 1.136 0.24315 2 0 Median 510290000 245090000 265200000 368700000 183880000 184820000 141590000 61211000 80377000 5017 2019 5143 13190;13191;13192;13193 20585;20586;20587;20588;20589;20590;20591;20592;20593;20594 20585 10 GIECDIR GPHFPLSLSTCLFGRGIECDIRIQLPVVSK LSTCLFGRGIECDIRIQLPVVSKQHCKIEI R G I I R I 0 1 0 1 1 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 861.40145 P46013 P46013 32 38 MKI67 Antigen KI-67 yes yes 2 0.026656 75.311 1 2 2.9251 2.5126 21.122 3 Median 1.5789 1.809 NaN 1 0 Median 2.9996 2.5965 4.6434 2 0 Median 256820000 90830000 165990000 171700000 68579000 103120000 85117000 22251000 62866000 5018 1569 5144 13194;13195;13196 20595;20596;20597;20598 20595 4 GIEEEEILPGFILCDPNNLCHSGR TDTVAPGENLKIRLKGIEEEEILPGFILCD GFILCDPNNLCHSGRTFDAQALICLVDKKS K G I G R T 0 1 2 1 2 0 4 3 1 3 3 0 0 1 2 1 0 0 0 0 0 0 24 0 2768.2898 H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170 H3BR35 374 397 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 3 3.5144E-09 52.483 2 3.2687 3.4334 16.869 2 Median 3.2687 3.4334 16.869 2 0 Median NaN NaN NaN 0 0 Median 57205000 13146000 44060000 57205000 13146000 44060000 0 0 0 5019 715 5145 13197;13198 20599;20600 20600 2 GIEGTVPYVTTDYNFK VGAIAIPHCVLKCQRGIEGTVPYVTTDYNF IEGTVPYVTTDYNFKLPGASEKIGAREPEE R G I F K L 0 0 1 1 0 0 1 2 0 1 0 1 0 1 1 0 3 0 2 2 0 0 16 0 1802.8727 Q5SY16 Q5SY16 655 670 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 0.0038892 55.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7503000 0 7503000 7503000 0 7503000 0 0 0 5020 1818 5146 13199 20601 20601 1 GIEILLEK KSLIPTLEKTKSTSKGIEILLEKLST____ KTKSTSKGIEILLEKLST____________ K G I E K L 0 0 0 0 0 0 2 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 8 0 913.54843 Q15397;B2RDG4;S4R3K8 Q15397 638 645 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.043538 56.721 1 1 0.8516 0.69561 NaN 1 Median NaN NaN NaN 0 0 Median 0.8516 0.69561 NaN 1 0 Median 4725900 2563700 2162200 0 0 0 4725900 2563700 2162200 5021 1761 5147 13200;13201 20602;20603 20602 2 GIEKPPFELPDFIK PRHWCFKRKYLQGKRGIEKPPFELPDFIKR RGIEKPPFELPDFIKRTGIQEMREALQEKE R G I I K R 0 0 0 1 0 0 2 1 0 2 1 2 0 2 3 0 0 0 0 0 0 0 14 1 1628.8814 Q13435;Q7Z3K9;E9PPJ0 Q13435 516 529 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 3 0.0040799 38.028 1 1.0769 1.2269 NaN 1 Median 1.0769 1.2269 NaN 1 0 Median NaN NaN NaN 0 0 Median 9920500 4453800 5466700 9920500 4453800 5466700 0 0 0 5022 1713 5148 13202 20604 20604 1 GIEQAVQSHAVAEEEAR DNFTLDINTAYARLRGIEQAVQSHAVAEEE EQAVQSHAVAEEEARKAHQLWLSVEALKYS R G I A R K 4 1 0 0 0 2 4 1 1 1 0 0 0 0 0 1 0 0 0 2 0 0 17 0 1822.881 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 548 564 IMMT MICOS complex subunit MIC60 no no 2;3 8.9814E-26 145.43 3 0.9854 1.1243 13.846 3 Plateau 0.9854 1.1243 13.846 3 0 Plateau NaN NaN NaN 0 0 Median 277250000 134620000 142630000 277250000 134620000 142630000 0 0 0 5023 1774;1029;1128 5149 13203;13204;13205 20605;20606;20607;20608;20609;20610 20610 6 GIEQAVQSHAVAEEEARK DNFTLDINTAYARLRGIEQAVQSHAVAEEE QAVQSHAVAEEEARKAHQLWLSVEALKYSM R G I R K A 4 1 0 0 0 2 4 1 1 1 0 1 0 0 0 1 0 0 0 2 0 0 18 1 1950.9759 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 548 565 IMMT MICOS complex subunit MIC60 no no 3 1.1888E-05 60.564 3 1.1024 1.2705 NaN 1 Median 1.1024 1.2705 NaN 1 0 Median NaN NaN NaN 0 0 Median 28450000 13753000 14697000 28450000 13753000 14697000 0 0 0 5024 1774;1029;1128 5150 13206;13207;13208 20611;20612;20613;20614 20614 4 GIFEPFGR YVGSLHFNITEDMLRGIFEPFGRIESIQLM ITEDMLRGIFEPFGRIESIQLMMDSETGRS R G I G R I 0 1 0 0 0 0 1 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 8 0 921.47085 A0A0U1RQH7;B7Z4L7;Q6N037;E1P5S2;G3XAC6;B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;Q7Z3L0;Q6MZY7;A0A0U1RQW2;H0Y4X3 A0A0U1RQH7 115 122 DKFZp686A11192;RNPC2;RBM39;DKFZp781C0423;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 2 0.039273 55.504 1 0.78861 0.79966 NaN 1 Median 0.78861 0.79966 NaN 1 0 Median NaN NaN NaN 0 0 Median 28657000 15115000 13542000 28657000 15115000 13542000 0 0 0 5025 588 5151 13209 20615 20615 1 GIFNGFSVTLK DLVKCRMQVDPQKYKGIFNGFSVTLKEDGV QKYKGIFNGFSVTLKEDGVRGLAKGWAPTF K G I L K E 0 0 1 0 0 0 0 2 0 1 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1181.6445 F8VVM2;Q8NCF7;Q53HC3;B2RE88;A0A024RBE8;A0A024RBH9;Q00325;F8VZL5;F8VWR4;F8VWQ0 F8VVM2 101 111 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 0.0010483 82.749 2 1 1.6186 1.7012 8.1693 2 Median 1.6186 1.7012 8.1693 2 0 Median NaN NaN NaN 0 0 Median 27342000 9378700 17963000 26713000 9378700 17334000 629010 0 629010 5026 335 5152 13210;13211;13212 20616;20617;20618;20619 20616 4 GIFTSEIGTK LAKLYRSIGEYDVLRGIFTSEIGTKQITQS YDVLRGIFTSEIGTKQITQSALLAEARSDY R G I T K Q 0 0 0 0 0 0 1 2 0 2 0 1 0 1 0 1 2 0 0 0 0 0 10 0 1051.555 P78527 P78527 2941 2950 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00083563 80.455 2 1 0.68437 0.73294 3.4371 2 Median 0.68437 0.73294 3.4371 2 0 Median NaN NaN NaN 0 0 Median 76161000 45149000 31012000 70287000 39276000 31012000 5873400 5873400 0 5027 1665 5153 13213;13214;13215 20620;20621;20622;20623;20624 20621 5 GIGIHHGGLLPILK KKLPQVEHVLPLLKRGIGIHHGGLLPILKE RGIGIHHGGLLPILKETIEILFSEGLIKAL R G I L K E 0 0 0 0 0 0 0 4 2 3 3 1 0 0 1 0 0 0 0 0 0 0 14 0 1423.8664 P42285;A8K6I4;B4E3M6 P42285 451 464 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 3 0.0023823 39.878 1 0.87699 0.6928 NaN 1 Median NaN NaN NaN 0 0 Median 0.87699 0.6928 NaN 1 0 Median 5231000 2240400 2990600 0 0 0 5231000 2240400 2990600 5028 1563 5154 13216 20625 20625 1 GIGLAIVR MSSGIHVALVTGGNKGIGLAIVRDLCRLFS LVTGGNKGIGLAIVRDLCRLFSGDVVLTAR K G I V R D 1 1 0 0 0 0 0 2 0 2 1 0 0 0 0 0 0 0 0 1 0 0 8 0 797.51232 E9PQ63;A8MTM1;P16152 E9PQ63 16 23 CBR1 Carbonyl reductase [NADPH] 1 yes no 2 0.017314 67.035 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3986000 0 3986000 3986000 0 3986000 0 0 0 5029 795 5155 13217 20626 20626 1 GIGMGNIGPAGMGMEGIGFGINK LGPGGQPIDANHLNKGIGMGNIGPAGMGME PAGMGMEGIGFGINKMGGMEGPFGGGMENM K G I N K M 1 0 2 0 0 0 1 9 0 4 0 1 3 1 1 0 0 0 0 0 0 0 23 0 2177.0432 M0QZM1;P52272;A0A087X0X3;Q7KYM9;M0QYL3 P52272 323 345 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M no no 2 5.2156E-17 103.76 2 4.6878 5.0248 10.984 2 Median 4.6878 5.0248 10.984 2 0 Median NaN NaN NaN 0 0 Median 70560000 14178000 56383000 70560000 14178000 56383000 0 0 0 5030 1599;1354 5156 13218;13219 20627;20628;20629;20630 20629 1013;1014;1015 4 GIGTPPNTTPIK GAHDAKLRFESQEMKGIGTPPNTTPIKNGS EMKGIGTPPNTTPIKNGSPEIKLKITKTYM K G I I K N 0 0 1 0 0 0 0 2 0 2 0 1 0 0 3 0 3 0 0 0 0 0 12 0 1194.6608 O96028;Q05CW4;D6R9V2;D6RIS1 O96028 107 118 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.049321 32.751 1 2.7875 2.3078 NaN 1 Median NaN NaN NaN 0 0 Median 2.7875 2.3078 NaN 1 0 Median 1673400 314620 1358800 0 0 0 1673400 314620 1358800 5031 1435 5157 13220 20631 20631 1 GIGYFFVLQPK GVSPKDRCKLICQAKGIGYFFVLQPKVVDG CQAKGIGYFFVLQPKVVDGTPCSPDSTSVC K G I P K V 0 0 0 0 0 1 0 2 0 1 1 1 0 2 1 0 0 0 1 1 0 0 11 0 1267.6965 B2RB33;Q8NE26;Q5HYL0;Q9UHI8 B2RB33 649 659 ADAMTS1;DKFZp686E01144 A disintegrin and metalloproteinase with thrombospondin motifs 1 yes no 2 0.0013233 68.383 2 0.53755 0.54222 11.412 2 Median 0.53755 0.54222 11.412 2 0 Median NaN NaN NaN 0 0 Median 12189000 7292300 4897000 12189000 7292300 4897000 0 0 0 5032 877 5158 13221;13222 20632;20633 20632 2 GIHNSIGDYR GVDLASVEQHINSHRGIHNSIGDYRWQLDK INSHRGIHNSIGDYRWQLDKIKADLREKSA R G I Y R W 0 1 1 1 0 0 0 2 1 2 0 0 0 0 0 1 0 0 1 0 0 0 10 0 1130.5469 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 223 232 DSP;DSP variant protein Desmoplakin yes no 3 0.013139 37.696 1 0.54386 0.55339 NaN 1 Median 0.54386 0.55339 NaN 1 0 Median NaN NaN NaN 0 0 Median 20497000 12639000 7858000 20497000 12639000 7858000 0 0 0 5033 1486 5159 13223 20634 20634 1 GIIASSVGTILK KYILVTGGVISGIGKGIIASSVGTILKSCG IGKGIIASSVGTILKSCGLHVTSIKIDPYI K G I L K S 1 0 0 0 0 0 0 2 0 3 1 1 0 0 0 2 1 0 0 1 0 0 12 0 1157.702 P17812;B4DMB5;B7Z9C4 P17812 17 28 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.00059524 68.657 2 2 2.2996 2.4321 55.25 4 Linear 2.2492 2.3558 6.6271 2 0 Median 1.1482 0.90802 4.9932 2 0 Median 73055000 22708000 50347000 66184000 19738000 46446000 6871000 2970000 3901000 5034 1494 5160 13224;13225;13226;13227 20635;20636;20637;20638 20636 4 GIIRPGTAFELLEAQAATGYVIDPIK DATKERLSVYQAMKKGIIRPGTAFELLEAQ LEAQAATGYVIDPIKGLKLTVEEAVRMGIV K G I I K G 4 1 0 1 0 1 2 3 0 4 2 1 0 1 2 0 2 0 1 1 0 0 26 1 2742.4956 Q15149;D3DWL0;Q96IE3 Q15149 4093 4118 PLEC;PLEC1 Plectin yes no 3 4.7969E-28 118.57 2 1.7379 2.071 4.169 2 Median 1.7379 2.071 4.169 2 0 Median NaN NaN NaN 0 0 Median 219510000 79590000 139920000 219510000 79590000 139920000 0 0 0 5035 1754 5161 13228;13229 20639;20640;20641;20642 20641 4 GILADEDSSRPVWLK LPVDDTSFRWVESLKGILADEDSSRPVWLK GILADEDSSRPVWLKAINCATSGVVGLVNC K G I L K A 1 1 0 2 0 0 1 1 0 1 2 1 0 0 1 2 0 1 0 1 0 0 15 1 1684.8784 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1428 1442 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.0050464 55.841 3 1.866 2.1429 NaN 1 Median 1.866 2.1429 NaN 1 0 Median NaN NaN NaN 0 0 Median 32988000 10191000 22798000 32988000 10191000 22798000 0 0 0 5036 587 5162 13230;13231;13232 20643;20644;20645 20645 3 GILDYLDNISPQQIR VLNPSAMMMNAVFVKGILDYLDNISPQQIR GILDYLDNISPQQIRKLFYVLSTLAFSKQN K G I I R K 0 1 1 2 0 2 0 1 0 3 2 0 0 0 1 1 0 0 1 0 0 0 15 0 1743.9155 A0A024R2G2;Q9BXW9;H7BZJ7 A0A024R2G2 516 530 FANCD2 Fanconi anemia group D2 protein yes no 2 0.03657 24.855 1 0.95828 0.99014 NaN 1 Median 0.95828 0.99014 NaN 1 0 Median NaN NaN NaN 0 0 Median 23708000 11676000 12032000 23708000 11676000 12032000 0 0 0 5037 111 5163 13233 20646 20646 1 GILIPLCESGTCTLR MALKKALFKPGAWFKGILIPLCESGTCTLR GILIPLCESGTCTLREAIIVGSIITKCSIP K G I L R E 0 1 0 0 2 0 1 2 0 2 3 0 0 0 1 1 2 0 0 0 0 0 15 0 1688.859 Q13895 Q13895 289 303 BYSL Bystin yes yes 2 0.00022114 65.5 2 1 0.98458 1.0607 16.947 3 Plateau 0.99549 1.0537 0.94854 2 0 Median 0.9603 0.78581 NaN 1 0 Median 61282000 32231000 29050000 48006000 25975000 22032000 13275000 6256800 7018400 5038 1724 5164 13234;13235;13236 20647;20648;20649;20650;20651 20649 5 GILLFGPPGTGK IKFPHLFTGKRTPWRGILLFGPPGTGKSYL PWRGILLFGPPGTGKSYLAKAVATEANNST R G I G K S 0 0 0 0 0 0 0 4 0 1 2 1 0 1 2 0 1 0 0 0 0 0 12 0 1155.6652 A0A024R705;Q9UN37;I3L4J1;A8K5D8;A8K4G7;A0A024R2C5;O75351;B3KNH6;Q6PIW4 A0A024R705 162 173 VPS4A;VPS4B;FIGNL1 Vacuolar protein sorting-associated protein 4A;Vacuolar protein sorting-associated protein 4B;Fidgetin-like protein 1 yes no 2 0.00090687 64.04 2 1.5037 1.5427 7.6216 2 Median 1.5037 1.5427 7.6216 2 0 Median NaN NaN NaN 0 0 Median 32329000 11904000 20425000 32329000 11904000 20425000 0 0 0 5039 213 5165 13237;13238 20652;20653;20654;20655 20654 4 GILLFGTK GVGITLGAHQSIGFKGILLFGTKAQKEKYL HQSIGFKGILLFGTKAQKEKYLPKLASGET K G I T K A 0 0 0 0 0 0 0 2 0 1 2 1 0 1 0 0 1 0 0 0 0 0 8 0 847.51674 Q53HR2;B4DEA8;P49748;B3KPA6;J3QKU9;K7EQP4;B4DYY0 Q53HR2 188 195 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.026541 64.567 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5040 965 5166 13239;13240 20656;20657 20656 2 GILLQLFGGTR SALAPSIYEHEDIKKGILLQLFGGTRKDFS DIKKGILLQLFGGTRKDFSHTGGGKFRAEI K G I T R K 0 1 0 0 0 1 0 3 0 1 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1173.687 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RG31 B4DLA6 439 449 MCM4 DNA replication licensing factor MCM4 yes no 2 0.00011853 96.331 2 2 0.93711 0.878 41.955 4 Median 1.2148 1.2325 4.8377 2 0 Median 0.68482 0.60137 10.395 2 0 Median 19024000 8519100 10504000 16855000 7269000 9586000 2168600 1250100 918440 5041 235 5167 13241;13242;13243;13244 20658;20659;20660;20661;20662;20663 20659 6 GILNFLMHPK VLDLERSGVNSELVKGILNFLMHPKPSGKP SELVKGILNFLMHPKPSGKPLPKSKKTCSK K G I P K P 0 0 1 0 0 0 0 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 10 0 1168.6427 B4DNW3 B4DNW3 154 163 yes yes 2 0.0035669 60.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5042 1018 5168 13245 20664 20664 804 1 GILRPLSTR LNSSEEDDTEGFSERGILRPLSTRHGVEDD EGFSERGILRPLSTRHGVEDDEEDEEEGEE R G I T R H 0 2 0 0 0 0 0 1 0 1 2 0 0 0 1 1 1 0 0 0 0 0 9 1 1011.6189 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7 Q9Y3T9 685 693 NOC2L Nucleolar complex protein 2 homolog yes no 3 0.0073101 55.064 2 1.1732 1.2773 NaN 1 Median 1.1732 1.2773 NaN 1 0 Median NaN NaN NaN 0 0 Median 86234000 45993000 40241000 86234000 45993000 40241000 0 0 0 5043 2139 5169 13246;13247 20665;20666;20667 20665 3 GINSSNVENQLQATQAAR NNQGTVNWSVDDIVKGINSSNVENQLQATQ SSNVENQLQATQAARKLLSREKQPPIDNII K G I A R K 3 1 3 0 0 3 1 1 0 1 1 0 0 0 0 2 1 0 0 1 0 0 18 0 1899.9399 Q7Z726;A8K7D9;P52292;J3QLL0;J3KS65 Q7Z726 84 101 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 1.7128E-16 118.37 2 2 0.80053 0.75403 43.791 4 Median 1.0484 1.1397 15.088 2 0 Median 0.63403 0.54235 3.2713 2 0 Median 158200000 81519000 76684000 105400000 49698000 55705000 52799000 31820000 20978000 5044 769 5170 13248;13249;13250;13251 20668;20669;20670;20671;20672;20673;20674;20675;20676;20677;20678;20679 20672 12 GINTLVTYDMVPEPK TYFNKPDIDAWELRKGINTLVTYDMVPEPK GINTLVTYDMVPEPKIIDAALRACRRLNDF K G I P K I 0 0 1 1 0 0 1 1 0 1 1 1 1 0 2 0 2 0 1 2 0 0 15 0 1675.8491 H3BNX8;P20674 H3BNX8 73 87 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 2 6.3773E-06 90.614 2 1.2593 1.3004 10.405 2 Median 1.2593 1.3004 10.405 2 0 Median NaN NaN NaN 0 0 Median 63353000 21849000 41504000 63353000 21849000 41504000 0 0 0 5045 1301 5171 13252;13253 20680;20681;20682;20683;20684 20680 989 5 GIPEFWLTVFK KIEDEKKDEEKEDPKGIPEFWLTVFKNVDL EDPKGIPEFWLTVFKNVDLLSDMVQEHDEP K G I F K N 0 0 0 0 0 0 1 1 0 1 1 1 0 2 1 0 1 1 0 1 0 0 11 0 1335.7227 F8VY35;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8W020;F8W118;F8VXI6;F8VUX1;F8VV59;A0A024RBE6;F8W0J6;B7Z2V4;H0YH88;H0YHC3;F8W543;B7Z9C2 F8VY35 166 176 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2 0.00013524 98.249 2 2 1.1532 1.121 5.5062 4 Median 0.95011 1.0741 6.771 2 0 Median 1.3763 1.14 3.1124 2 0 Median 363140000 176640000 186500000 281370000 141910000 139460000 81771000 34726000 47045000 5046 332 5172 13254;13255;13256;13257 20685;20686;20687;20688;20689 20686 3 GIPHLVTHDAR KYKLCKVRKIFVGTKGIPHLVTHDARTIRY VGTKGIPHLVTHDARTIRYPDPLIKVNDTI K G I A R T 1 1 0 1 0 0 0 1 2 1 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1214.652 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;Q53HI6 B2R491 135 145 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2;3 0.00012594 76.465 4 4 1.0308 0.94582 20.483 7 Median 1.0819 1.2065 7.3621 3 0 Median 0.97643 0.84299 6.1114 4 0 Median 574210000 271170000 303040000 413850000 189860000 223990000 160370000 81309000 79057000 5047 824 5173 13258;13259;13260;13261;13262;13263;13264;13265 20690;20691;20692;20693;20694;20695;20696;20697;20698;20699;20700;20701 20691 12 GIPILSLDWLHQSR DRIRRTVKFLCALGRGIPILSLDWLHQSRK RGIPILSLDWLHQSRKAGFFLPPDEYVVTD R G I S R K 0 1 0 1 0 1 0 1 1 2 3 0 0 0 1 2 0 1 0 0 0 0 14 0 1633.894 Q14676;B4DYH4 Q14676 1944 1957 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 0.029398 23.481 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2931600 2931600 0 2931600 2931600 0 0 0 0 5048 1738 5174 13266 20702 20702 1 GIPLESTDGER DKVWRLDLVMVILFKGIPLESTDGERLVKA ILFKGIPLESTDGERLVKAAQCGHPVLCVQ K G I E R L 0 1 0 1 0 0 2 2 0 1 1 0 0 0 1 1 1 0 0 0 0 0 11 0 1172.5673 Q6FI30;B7Z4T6;P08651;Q13051;A0A1B0GW37;U3KQE8;Q5VW28;A0A1B0GWJ4;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWI9;Q5VW27;Q5VW30;Q5VW26;O00712;B4DS74;U3KPY9;A0A087WXP2;Q5W0Y9;A0A0S2Z4H3;B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857;S4R3K4;S4R308;K7ESG9;K7EKH0;K7EJB0;Q7Z3K7;C9JWJ8;K7EN08;D2DXM9;B4DHW2;Q14938 Q6FI30 131 141 NFIC;NFI;NFIB;NFIA;NFIX;DKFZp686I05275 Nuclear factor 1;Nuclear factor 1 C-type;Nuclear factor 1 B-type;Nuclear factor 1 A-type;Nuclear factor 1 X-type no no 2 0.00036511 84.213 2 2 0.80677 0.97525 21.09 4 Linear 0.82761 0.92934 0.40714 2 0 Median 0.79377 0.64505 0.94632 2 0 Median 208990000 112800000 96191000 184770000 99700000 85071000 24215000 13095000 11120000 5049 1091;816;473 5175 13267;13268;13269;13270 20703;20704;20705;20706;20707;20708;20709;20710 20704 8 GIPVELWAHYVEELNSTQR VEIPSEWHIELMLDRGIPVELWAHYVEELN ELWAHYVEELNSTQRVAVEDSVFLVFSLKK R G I Q R V 1 1 1 0 0 1 3 1 1 1 2 0 0 0 1 1 1 1 1 2 0 0 19 0 2240.1226 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1 B2RWN5 762 780 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 3.5639E-07 78.021 3 2 1.1013 0.96527 10.73 4 Linear 0.78272 0.8166 7.8904 2 0 Median 1.1159 0.96461 2.3808 2 0 Median 122420000 66570000 55850000 45963000 29590000 16374000 76457000 36981000 39476000 5050 897 5176 13271;13272;13273;13274;13275 20711;20712;20713;20714;20715;20716;20717;20718;20719;20720;20721 20711 11 GIPVLVGLLDHPK CYRNDKVKTDVRKLKGIPVLVGLLDHPKKE LKGIPVLVGLLDHPKKEVHLGACGALKNIS K G I P K K 0 0 0 1 0 0 0 2 1 1 3 1 0 0 2 0 0 0 0 2 0 0 13 0 1356.8129 Q7KZJ3;A0A024R4Z0;Q96FS1;Q68DU0;C9JZR2;O60716;A0A024R4Y7;E9PKY0 Q7KZJ3 86 98 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 2 0.03805 31.843 1 1.038 1.0257 NaN 1 Median 1.038 1.0257 NaN 1 0 Median NaN NaN NaN 0 0 Median 8397700 3976300 4421400 8397700 3976300 4421400 0 0 0 5051 165 5177 13276 20722 20722 1 GIPVVEHK IDPENNLISIWNNGKGIPVVEHKVEKMYVP SIWNNGKGIPVVEHKVEKMYVPALIFGQLL K G I H K V 0 0 0 0 0 0 1 1 1 1 0 1 0 0 1 0 0 0 0 2 0 0 8 0 877.50215 P11388;J3KTB7;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 124 131 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.0042374 94.262 2 2 0.92919 0.94955 20.978 4 Median 0.66146 0.79163 3.4878 2 0 Median 1.3088 1.1351 3.0111 2 0 Median 4141800000 2377200000 1764600000 3783200000 2225900000 1557300000 358600000 151250000 207350000 5052 1471;1679 5178 13277;13278;13279;13280 20723;20724;20725;20726;20727;20728;20729;20730 20724 8 GISAGAVQTAGK NKSPEAKPLPGKLPKGISAGAVQTAGKKGP LPKGISAGAVQTAGKKGPQSLFNAPRGKKR K G I G K K 3 0 0 0 0 1 0 3 0 1 0 1 0 0 0 1 1 0 0 1 0 0 12 0 1058.572 P46087;F5GWB7;F5H709 P46087 80 91 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 3.2542E-08 118.04 2 1.1485 1.2881 7.69 2 Median 1.1485 1.2881 7.69 2 0 Median NaN NaN NaN 0 0 Median 218140000 104090000 114050000 218140000 104090000 114050000 0 0 0 5053 1570 5179 13281;13282 20731;20732;20733;20734 20732 4 GISCMNTTLSESPFK HDHWKALVTKKTNGKGISCMNTTLSESPFK GISCMNTTLSESPFKCDPDAARAIVDALPP K G I F K C 0 0 1 0 1 0 1 1 0 1 1 1 1 1 1 3 2 0 0 0 0 0 15 0 1670.7644 V9HWB5;Q15181 V9HWB5 239 253 HEL-S-66p;PPA1 Inorganic pyrophosphatase yes no 2 0.0051619 46.592 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5054 1755 5180 13283 20735 20735 1621 1 GISDPLTVFEQTEAAAR DAGACIYFYFAFNYRGISDPLTVFEQTEAA SDPLTVFEQTEAAAREEILANGGSLSHHHG R G I A R E 3 1 0 1 0 1 2 1 0 1 1 0 0 1 1 1 2 0 0 1 0 0 17 0 1803.9003 A0A1B0GWA2;B7Z3Q4;O00116;Q53S12;B8ZZ81 A0A1B0GWA2 501 517 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 0.0018751 55.261 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3951900 0 3951900 3951900 0 3951900 0 0 0 5055 635 5181 13284 20736 20736 1 GISHVIVDEIHER CTVGVLLRKLEAGIRGISHVIVDEIHERDI IRGISHVIVDEIHERDINTDFLLVVLRDVV R G I E R D 0 1 0 1 0 0 2 1 2 3 0 0 0 0 0 1 0 0 0 2 0 0 13 0 1502.7841 Q08211;Q58F26;Q6PJK6 Q08211 504 516 DHX9 ATP-dependent RNA helicase A yes no 3 3.7755E-05 77.192 2 1.5825 1.2868 4.4517 2 Median NaN NaN NaN 0 0 Median 1.5825 1.2868 4.4517 2 0 Median 25021000 10301000 14720000 0 0 0 25021000 10301000 14720000 5056 1691 5182 13285;13286 20737;20738;20739;20740 20738 4 GISLNPEQWSQLK EYWMDPEGEMKPGRKGISLNPEQWSQLKEQ RKGISLNPEQWSQLKEQISDIDDAVRKL__ K G I L K E 0 0 1 0 0 2 1 1 0 1 2 1 0 0 1 2 0 1 0 0 0 0 13 0 1498.778 Q6IBA2;Q59G24;P53999;B7Z1Z0 Q6IBA2 102 114 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2 1.3272E-20 150.46 2 2 0.45082 0.93417 58.991 4 Linear 0.63343 0.70536 0.42523 2 0 Median 0.30685 0.2543 5.6231 2 0 Median 232610000 154150000 78464000 150730000 91328000 59402000 81882000 62820000 19063000 5057 1608 5183 13287;13288;13289;13290 20741;20742;20743;20744;20745;20746;20747;20748 20746 8 GISQAEIR MLTQTYDLIERRGTKGISQAEIRVAMNVGK IERRGTKGISQAEIRVAMNVGKLEARMLCR K G I I R V 1 1 0 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 8 0 872.47158 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 383 390 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0077322 81.784 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15982000 15982000 0 15982000 15982000 0 0 0 0 5058 1699 5184 13291 20749 20749 1 GISVHISNAEPK SKIAQSLCGEDLIIKGISVHISNAEPKHNS IIKGISVHISNAEPKHNSNRQLERSGRFGG K G I P K H 1 0 1 0 0 0 1 1 1 2 0 1 0 0 1 2 0 0 0 1 0 0 12 0 1250.6619 A0A087WX29;B4DRW3;A0A0A0N0L3;A0A024R4E2;Q13148;A0A087WXQ5;A0A087WV68;B1AKP7;G3V162;A0A087X260;A0A087WYY0;A0A087WW61;A0A087WX67;A0A087WXV3;A0A087WTZ4;K7EL26;A0A087WYE7;A0A087WZC9 A0A087WX29 195 206 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2 0.00055349 86.898 2 1 1.2161 1.1298 40.953 2 Median 1.4175 1.5093 NaN 1 0 Median 1.0432 0.84578 NaN 1 0 Median 63663000 17488000 46175000 60886000 16217000 44669000 2776800 1271400 1505400 5059 153 5185 13292;13293;13294 20750;20751;20752;20753 20751 4 GITGVDLFGTTDAVVK RKKNLSPGAVESDVRGITGVDLFGTTDAVV ITGVDLFGTTDAVVKHVLEGHDRGVNWAAF R G I V K H 1 0 0 2 0 0 0 3 0 1 1 1 0 1 0 0 3 0 0 3 0 0 16 0 1591.8457 P53621 P53621 183 198 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 3.0357E-06 107.17 1 2 0.68373 0.54904 7.4205 2 Median NaN NaN NaN 0 0 Median 0.68373 0.54904 7.4205 2 0 Median 23346000 18543000 4803700 12415000 12415000 0 10931000 6127700 4803700 5060 1607 5186 13295;13296;13297 20754;20755;20756;20757 20754 4 GITINAAHVEYSTAAR KKYEEIDNAPEERARGITINAAHVEYSTAA ITINAAHVEYSTAARHYAHTDCPGHADYVK R G I A R H 4 1 1 0 0 0 1 1 1 2 0 0 0 0 0 1 2 0 1 1 0 0 16 0 1672.8533 P49411 P49411 105 120 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 5.0957E-07 109.84 3 4 1.4803 1.2651 31.496 7 Median 1.8445 1.9603 5.1626 3 0 Median 1.3009 1.0982 10.542 4 0 Median 124220000 46111000 78114000 99691000 35081000 64610000 24534000 11030000 13504000 5061 1580 5187 13298;13299;13300;13301;13302;13303;13304 20758;20759;20760;20761;20762;20763;20764;20765;20766;20767;20768;20769;20770;20771 20763 14 GITNLCVIGGDGSLTGANLFR TREGRLKAACNLLQRGITNLCVIGGDGSLT VIGGDGSLTGANLFRKEWSGLLEELARNGQ R G I F R K 1 1 2 1 1 0 0 5 0 2 3 0 0 1 0 1 2 0 0 1 0 0 21 0 2134.0841 Q01813;Q5VSR5;V9GYV7 Q01813 118 138 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 1.5713E-15 137.46 2 1.663 1.7583 1.8603 2 Median 1.663 1.7583 1.8603 2 0 Median NaN NaN NaN 0 0 Median 46577000 17043000 29535000 46577000 17043000 29535000 0 0 0 5062 1677 5188 13305;13306 20772;20773;20774;20775 20774 4 GITPLLER GFWAAGWRVWLFFMRGITPLLERWLGNLLA VWLFFMRGITPLLERWLGNLLARQFEGRHS R G I E R W 0 1 0 0 0 0 1 1 0 1 2 0 0 0 1 0 1 0 0 0 0 0 8 0 897.52837 Q6P2Q9;I3L0J9 Q6P2Q9 643 650 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.014196 63.565 2 1.1271 1.1958 6.2259 2 Median 1.1271 1.1958 6.2259 2 0 Median NaN NaN NaN 0 0 Median 58473000 26552000 31921000 58473000 26552000 31921000 0 0 0 5063 1854 5189 13307;13308 20776;20777;20778 20777 3 GIVDQSQQAYQEAFEISK YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE DQSQQAYQEAFEISKKEMQPTHPIRLGLAL K G I S K K 2 0 0 1 0 4 2 1 0 2 0 1 0 1 0 2 0 0 1 1 0 0 18 0 2039.98 D0PNI1;P63104;B0AZS6;B7Z2E6;H0YB80;Q2F831 D0PNI1 140 157 YWHAZ 14-3-3 protein zeta/delta yes no 2 3.1244E-09 85.536 2 1.9873 1.9765 NaN 1 Median 1.9873 1.9765 NaN 1 0 Median NaN NaN NaN 0 0 Median 18510000 3220800 15290000 18510000 3220800 15290000 0 0 0 5064 1182 5190 13309;13310 20779;20780 20780 2 GIVDSITGQR TENLEKISITEGIERGIVDSITGQRLLEAQ EGIERGIVDSITGQRLLEAQACTGGIIHPT R G I Q R L 0 1 0 1 0 1 0 2 0 2 0 0 0 0 0 1 1 0 0 1 0 0 10 0 1044.5564 P15924;Q4LE79 P15924 2640 2649 DSP;DSP variant protein Desmoplakin yes no 2 0.0026988 67.897 2 1 0.89469 0.92187 NaN 1 Median 0.89469 0.92187 NaN 1 0 Median NaN NaN NaN 0 0 Median 18714000 10853000 7861300 18714000 10853000 7861300 0 0 0 5065 1486 5191 13311;13312;13313 20781;20782;20783;20784 20781 4 GIVEESVTGVHR HWVYKKYPNVFKKIRGIVEESVTGVHRLYQ KIRGIVEESVTGVHRLYQLSKAGKLCVPAM R G I H R L 0 1 0 0 0 0 2 2 1 1 0 0 0 0 0 1 1 0 0 3 0 0 12 0 1281.6677 Q6ZMM9;Q2NKW8;H0Y8B3;Q6ZNS6;A0A024R0A8;V5YQL4;O43865;Q96HN2 Q6ZMM9 114 125 AHCYL1;AHCYL2;FGFR2-AHCYL1 Adenosylhomocysteinase;Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 2 5.7618E-25 163.16 2 1.6016 1.7133 20.841 2 Median 1.6016 1.7133 20.841 2 0 Median NaN NaN NaN 0 0 Median 63699000 24059000 39640000 63699000 24059000 39640000 0 0 0 5066 40 5192 13314;13315 20785;20786;20787;20788 20788 4 GIVEFSGK RAVVIVDDRGRPSGKGIVEFSGKPAARKAL RGRPSGKGIVEFSGKPAARKALDRCSEGSF K G I G K P 0 0 0 0 0 0 1 2 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 0 835.44397 A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9IZL7 A8K525 191 198 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.012693 67.032 1 1.5166 1.6956 NaN 1 Median 1.5166 1.6956 NaN 1 0 Median NaN NaN NaN 0 0 Median 105630000 40771000 64857000 105630000 40771000 64857000 0 0 0 5067 573 5193 13316 20789;20790 20790 2 GIVILMVDEK IQMSGRAGRRGMDDRGIVILMVDEKMSPTI GMDDRGIVILMVDEKMSPTIGKQLLKGSAD R G I E K M 0 0 0 1 0 0 1 1 0 2 1 1 1 0 0 0 0 0 0 2 0 0 10 0 1115.626 P42285;A8K6I4;B4E3M6 P42285 533 542 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.0016457 64.711 1 1.6668 1.719 NaN 1 Median 1.6668 1.719 NaN 1 0 Median NaN NaN NaN 0 0 Median 18248000 6070400 12178000 18248000 6070400 12178000 0 0 0 5068 1563 5194 13317 20791;20792 20792 1316 2 GIVNEQFLLQR QFATVVEAKLIKHKKGIVNEQFLLQRLADG KHKKGIVNEQFLLQRLADGAIDLYAMVVVL K G I Q R L 0 1 1 0 0 2 1 1 0 1 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1315.7248 Q53HR2;B4DEA8;P49748;B3KPA6;B3KPX1;J3QRJ8 Q53HR2 557 567 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 7.8831E-09 113.26 2 2 0.37323 0.3153 15.214 2 Median NaN NaN NaN 0 0 Median 0.37323 0.3153 15.214 2 0 Median 6472400 4773000 1699400 0 0 0 6472400 4773000 1699400 5069 965 5195 13318;13319;13320;13321 20793;20794;20795;20796 20793 4 GIYAYGFEK VDSFDDMNLSESLLRGIYAYGFEKPSAIQQ SESLLRGIYAYGFEKPSAIQQRAILPCIKG R G I E K P 1 0 0 0 0 0 1 2 0 1 0 1 0 1 0 0 0 0 2 0 0 0 9 0 1046.5073 A0A024R8W0;P38919;I3L3H2;C9JUF0;Q59GT8;Q5JWW0;J3QQP0;E9PBH4;F8WE11;A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;J3QR64;E7EQG2;Q14240;J3QLN6;J3QKZ9;B4E047;J3KS25;B4E102;J3KS93;J3KSN7;J3KT04;E7EMV8;Q86WD0 A8K7F6 46 54 DDX48;EIF4A3;EIF4A2;DKFZp566L241;EIF4A1 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.00045646 98.997 2 2 1.7442 1.6712 32.003 4 Median 1.9198 2.1852 1.6676 2 0 Median 1.5824 1.2574 3.9805 2 0 Median 346070000 114170000 231900000 315440000 102160000 213280000 30629000 12012000 18616000 5070 770;261 5196 13322;13323;13324;13325 20797;20798;20799;20800;20801;20802;20803;20804 20802 8 GIYFADMVSK IAPPEAPVTGYMFGKGIYFADMVSKSANYC YMFGKGIYFADMVSKSANYCHTSQGDPIGL K G I S K S 1 0 0 1 0 0 0 1 0 1 0 1 1 1 0 1 0 0 1 1 0 0 10 0 1129.5478 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 894 903 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.0103 53.089 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5071 139 5197 13326;13327 20805;20806 20806 119 2 GIYIDPEILEK TSMVGCLWTSKPFGKGIYIDPEILEKTGVA PFGKGIYIDPEILEKTGVAEYKNSLNVVHH K G I E K T 0 0 0 1 0 0 2 1 0 3 1 1 0 0 1 0 0 0 1 0 0 0 11 0 1288.6915 B4DZL4;A0A024RCG4;Q92674 B4DZL4 660 670 FSHPRH1;CENPI Centromere protein I yes no 2 0.0018568 71.349 2 1 1.022 0.95174 18.2 3 Median 0.85698 0.88959 25.141 2 0 Median 1.2065 0.95174 NaN 1 0 Median 28319000 14659000 13660000 22384000 12016000 10368000 5935400 2643200 3292200 5072 360 5198 13328;13329;13330 20807;20808;20809;20810 20807 3 GIYPHEPK LQLSLADFRRLCILKGIYPHEPKHKKKVNK RRLCILKGIYPHEPKHKKKVNKGSTAARTF K G I P K H 0 0 0 0 0 0 1 1 1 1 0 1 0 0 2 0 0 0 1 0 0 0 8 0 939.48142 B5MCF9;B2RDF2;O00541 B5MCF9 42 49 PES1 Pescadillo homolog yes no 2;3 0.0042246 102.72 3 2 1.0049 0.99184 7.5671 5 Median 0.97309 1.0933 6.6237 3 0 Median 1.1969 0.95879 0.11764 2 0 Median 276130000 133740000 142390000 239910000 116620000 123300000 36218000 17122000 19096000 5073 886 5199 13331;13332;13333;13334;13335 20811;20812;20813;20814;20815;20816;20817 20813 7 GKDPTEHIPEIILNNFTTR FKMSSVRLRKEIKRRGKDPTEHIPEIILNN TEHIPEIILNNFTTRLGHSIGRMFASLFPH R G K T R L 0 1 2 1 0 0 2 1 1 3 1 1 0 1 2 0 3 0 0 0 0 0 19 1 2194.1382 Q9H9Y2 Q9H9Y2 236 254 RPF1 Ribosome production factor 1 yes yes 4 0.0018737 29.603 2 0.92241 0.76765 11.853 2 Median NaN NaN NaN 0 0 Median 0.92241 0.76765 11.853 2 0 Median 9067500 4745500 4322000 0 0 0 9067500 4745500 4322000 5074 2048 5200 13336;13337 20818;20819 20819 2 GKEDALVTK VMVEPHRHEGVFICRGKEDALVTKNLVPGE GVFICRGKEDALVTKNLVPGESVYGEKRVS R G K T K N 1 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 0 1 0 0 9 1 959.52876 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 40 48 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 5.4441E-07 139.43 1 0.70076 0.82744 NaN 1 Median 0.70076 0.82744 NaN 1 0 Median NaN NaN NaN 0 0 Median 38140000 23709000 14431000 38140000 23709000 14431000 0 0 0 5075 1506 5201 13338 20820;20821 20821 2 GKEDLQTNSFPVLLTQGLESNDFEMLNK IEERLGAMDIDTHKKGKEDLQTNSFPVLLT LTQGLESNDFEMLNKVLQTRNVNLIKKTVL K G K N K V 0 0 3 2 0 2 3 2 0 0 5 2 1 2 1 2 2 0 0 1 0 0 28 1 3166.5492 Q15061 Q15061 453 480 WDR43 WD repeat-containing protein 43 yes yes 3 4.0207E-16 66.027 1 0.81404 0.69077 NaN 1 Median NaN NaN NaN 0 0 Median 0.81404 0.69077 NaN 1 0 Median 22716000 11956000 10761000 0 0 0 22716000 11956000 10761000 5076 1752 5202 13339 20822 20822 1601 1 GKEEEILK CLLQDLSYYCCLELKGKEEEILKALSGMCN YCCLELKGKEEEILKALSGMCNIDTGLTFA K G K L K A 0 0 0 0 0 0 3 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 8 1 944.51786 Q96F88;Q99575 Q96F88 257 264 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.00010529 142.04 1 0.27763 0.32156 NaN 1 Median 0.27763 0.32156 NaN 1 0 Median NaN NaN NaN 0 0 Median 54653000 41918000 12735000 54653000 41918000 12735000 0 0 0 5077 1965 5203 13340 20823 20823 1 GKLEAIITPPPAK PNIHPELLAKKRGSKGKLEAIITPPPAKKA SKGKLEAIITPPPAKKAKSPSQKKPVSKKA K G K A K K 2 0 0 0 0 0 1 1 0 2 1 2 0 0 3 0 1 0 0 0 0 0 13 1 1333.7969 O75367;D6RCF2 O75367 122 134 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 0.00045844 109.24 4 2 0.99593 1.1613 19.539 5 Median 1.0029 1.176 2.4979 3 0 Median 0.97771 0.83085 1.3453 2 0 Median 178660000 89152000 89512000 106880000 52362000 54518000 71785000 36790000 34995000 5078 1401 5204 13341;13342;13343;13344;13345;13346 20824;20825;20826;20827;20828;20829;20830;20831;20832;20833;20834;20835;20836;20837;20838 20838 15 GKLELVDNK ARNGNRSSTRSSSTKGKLELVDNKITTKKR RSSSTKGKLELVDNKITTKKRSKSRSKERT K G K N K I 0 0 1 1 0 0 1 1 0 0 2 2 0 0 0 0 0 0 0 1 0 0 9 1 1014.571 B4DZQ5;A0A024QZY5;Q13523 B4DZQ5 155 163 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes no 2 0.03568 63.734 1 0.5738 0.65561 NaN 1 Median 0.5738 0.65561 NaN 1 0 Median NaN NaN NaN 0 0 Median 14890000 11389000 3500900 14890000 11389000 3500900 0 0 0 5079 33 5205 13347 20839 20839 1 GKLPIVNEDDELVAIIAR ITLKEANEILQRSKKGKLPIVNEDDELVAI PIVNEDDELVAIIARTDLKKNRDYPLASKD K G K A R T 2 1 1 2 0 0 2 1 0 3 2 1 0 0 1 0 0 0 0 2 0 0 18 1 1964.0942 H0Y4R1;P12268;B7Z1G4;Q6QE17;E7ETK5 H0Y4R1 139 156 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.00031804 55.314 2 1.4807 1.6344 6.5159 2 Median 1.4807 1.6344 6.5159 2 0 Median NaN NaN NaN 0 0 Median 23697000 10917000 12780000 23697000 10917000 12780000 0 0 0 5080 1282 5206 13348;13349 20840;20841 20841 2 GKPDLNTALPVR KSRQRVRYDSSNQVKGKPDLNTALPVRQTA QVKGKPDLNTALPVRQTASIFKQPVTKITN K G K V R Q 1 1 1 1 0 0 0 1 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 1 1279.7248 O95983;B3KMA8;K7EIE8;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983 91 102 MBD3 Methyl-CpG-binding domain protein 3 yes no 2 0.0019906 72.006 1 1.6509 1.4141 NaN 1 Median NaN NaN NaN 0 0 Median 1.6509 1.4141 NaN 1 0 Median 2759100 1132400 1626700 0 0 0 2759100 1132400 1626700 5081 1432 5207 13350 20842 20842 1 GKPDLNTTLPIR KNKQRLRNDPLNQNKGKPDLNTTLPIRQTA QNKGKPDLNTTLPIRQTASIFKQPVTKVTN K G K I R Q 0 1 1 1 0 0 0 1 0 1 2 1 0 0 2 0 2 0 0 0 0 0 12 1 1323.751 Q9UBB5;O60535;J3KSA7 Q9UBB5 235 246 MBD2;NY-CO-41 Methyl-CpG-binding domain protein 2 yes no 2;3 0.0010418 77.379 2 0.90751 1.0391 5.9702 2 Median 0.90751 1.0391 5.9702 2 0 Median NaN NaN NaN 0 0 Median 46099000 21503000 24595000 46099000 21503000 24595000 0 0 0 5082 2096 5208 13351;13352 20843;20844;20845 20844 3 GKPEIVGSNLDTLVSIGLDEK LERCSSVMLLGMMARGKPEIVGSNLDTLVS GSNLDTLVSIGLDEKFPQDYRLAQQVCHAI R G K E K F 0 0 1 2 0 0 2 3 0 2 3 2 0 0 1 2 1 0 0 2 0 0 21 1 2183.1685 B3KMS0;Q15021;B4E0B7;E7EN77;Q6ZV00 B3KMS0 784 804 NCAPD2 Condensin complex subunit 1 yes no 2;3 1.5761E-08 74.364 4 3 0.99443 1.1835 13.837 7 Median 0.87411 1.0119 7.9356 4 0 Median 1.5537 1.3284 4.0471 3 0 Median 428860000 201760000 227100000 264780000 137290000 127490000 164080000 64469000 99615000 5083 908 5209 13353;13354;13355;13356;13357;13358;13359 20846;20847;20848;20849;20850;20851;20852;20853;20854;20855;20856;20857 20848 12 GKPGFQGQSSSQAQQVIK REREIKKALIIKLRRGKPGFQGQSSSQAQQ GFQGQSSSQAQQVIKRNLRSRAKGAYICTY R G K I K R 1 0 0 0 0 5 0 3 0 1 0 2 0 1 1 3 0 0 0 1 0 0 18 1 1873.9646 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 642 659 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 3 0.021142 37.851 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4661400 4661400 0 4661400 4661400 0 0 0 0 5084 2109 5210 13360 20858 20858 1 GKSEVPEDLAGFIELFQTPSHTK AASLTGSKRQLRTPKGKSEVPEDLAGFIEL LAGFIELFQTPSHTKESMTNEKTTKVSYRA K G K T K E 1 0 0 1 0 1 3 2 1 1 2 2 0 2 2 2 2 0 0 1 0 0 23 1 2529.2751 P46013 P46013 1702 1724 MKI67 Antigen KI-67 yes yes 3;4 0.0048753 36.9 2 4.7131 4.0796 NaN 1 Median NaN NaN NaN 0 0 Median 4.7131 4.0796 NaN 1 0 Median 11953000 930380 11023000 0 0 0 11953000 930380 11023000 5085 1569 5211 13361;13362 20859;20860 20860 2 GKVEEVELPVEK IVKANKLDHVVTIIKGKVEEVELPVEKVDI IIKGKVEEVELPVEKVDIIISEWMGYCLFY K G K E K V 0 0 0 0 0 0 4 1 0 0 1 2 0 0 1 0 0 0 0 3 0 0 12 1 1354.7344 E9PKG1;Q5U8W9;H7C2I1;Q99873;A0A087X1W2;E9PNR9;E9PQ98;E9PIX6;H0YDE4;B4DJ87;Q59GT2;Q9NR22 E9PKG1 98 109 PRMT1;HRMT1L2;PRMT8 Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8 yes no 2 0.035508 67.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6988700 0 6988700 6988700 0 6988700 0 0 0 5086 1243 5212 13363 20861 20861 1 GKVEIDQQQLTQQQLNGN DERDEEDEERESKSRGKVEIDQQQLTQQQL EIDQQQLTQQQLNGN_______________ R G K G N - 0 0 2 1 0 6 1 2 0 1 2 1 0 0 0 0 1 0 0 1 0 0 18 1 2040.0236 A0A0D9SGE8;Q8IWS0;B4E138 A0A0D9SGE8 349 366 PHF6 PHD finger protein 6 yes no 2 4.732E-05 80.905 1 1.1119 0.86886 NaN 1 Median NaN NaN NaN 0 0 Median 1.1119 0.86886 NaN 1 0 Median 3687500 1936900 1750600 0 0 0 3687500 1936900 1750600 5087 528 5213 13364 20862 20862 1 GLAEVAVK RKLKKSNVVSLKAYKGLAEVAVKSLCELLV VSLKAYKGLAEVAVKSLCELLVALPHFNFH K G L V K S 2 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 785.4647 A8K905;Q8WTT2;B4DXL4 A8K905 337 344 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.0057846 89.369 2 1.2464 1.3099 5.5195 2 Median 1.2464 1.3099 5.5195 2 0 Median NaN NaN NaN 0 0 Median 83322000 36372000 46950000 83322000 36372000 46950000 0 0 0 5088 780 5214 13365;13366 20863;20864;20865 20864 3 GLAFELVYSPAIK PFYFKRPPINVAIDRGLAFELVYSPAIKDS DRGLAFELVYSPAIKDSTMRRYTISSALNL R G L I K D 2 0 0 0 0 0 1 1 0 1 2 1 0 1 1 1 0 0 1 1 0 0 13 0 1406.781 Q5VU10;P78346;B4DJR3;Q5VU11 Q5VU10 103 115 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.00013105 79.693 2 1 1.6895 1.7368 29.116 3 Plateau 1.6611 1.6882 4.0357 2 0 Median 1.1588 1.022 NaN 1 0 Median 17869000 6367500 11502000 16947000 5932100 11014000 922630 435380 487250 5089 1663 5215 13367;13368;13369 20866;20867;20868;20869 20867 4 GLAFLDELR MANSTGKAPPDERRKGLAFLDELRQFHHSR PDERRKGLAFLDELRQFHHSRGSPFKKIPA K G L L R Q 1 1 0 1 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1032.5604 Q68CP9 Q68CP9 16 24 ARID2 AT-rich interactive domain-containing protein 2 yes yes 2 0.003784 70.919 2 2 1.0281 0.96118 33.04 4 Median 0.73503 0.73563 10.088 2 0 Median 1.476 1.2749 12.216 2 0 Median 22381000 11378000 11003000 17304000 9449900 7853700 5077400 1928100 3149300 5090 1839 5216 13370;13371;13372;13373 20870;20871;20872;20873;20874;20875;20876;20877;20878 20870 9 GLAITFVSDENDAK TYLHRVARAGRFGTKGLAITFVSDENDAKI KGLAITFVSDENDAKILNDVQDRFEVNVAE K G L A K I 2 0 1 2 0 0 1 1 0 1 1 1 0 1 0 1 1 0 0 1 0 0 14 0 1478.7253 A0A024RCM3;Q13838;A0A0G2JJZ9;B4DP52;H0Y400;O00148;B4DX78;Q69YT6 O00148 384 397 hCG_2005638;DDX39B;DDX39A;DKFZp547B159 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 1.5139E-14 133.07 2 1.4315 1.5733 5.3374 2 Median 1.4315 1.5733 5.3374 2 0 Median NaN NaN NaN 0 0 Median 124350000 55518000 68829000 124350000 55518000 68829000 0 0 0 5091 1359;362 5217 13374;13375 20879;20880;20881;20882;20883;20884;20885;20886 20882 8 GLAPDLPEDLYHLIK RFVTGNKILRILKSKGLAPDLPEDLYHLIK GLAPDLPEDLYHLIKKAVAVRKHLERNRKD K G L I K K 1 0 0 2 0 0 1 1 1 1 4 1 0 0 2 0 0 0 1 0 0 0 15 0 1692.9087 P62277;J3KMX5 P62277 79 93 RPS13 40S ribosomal protein S13 yes no 2;3 1.0066E-10 122.69 3 4 1.188 1.4176 33.711 6 Linear 1.1333 1.3028 3.1167 3 0 Plateau 0.86643 0.70669 4.4019 3 0 Median 484370000 225760000 258610000 408490000 186640000 221850000 75875000 39116000 36759000 5092 1640 5218 13376;13377;13378;13379;13380;13381;13382 20887;20888;20889;20890;20891;20892;20893;20894;20895;20896;20897;20898;20899 20893 13 GLAPNTPGK EMLYGSAPRTPSKRRGLAPNTPGKARKLNT TPSKRRGLAPNTPGKARKLNTTTMSNATAN R G L G K A 1 0 1 0 0 0 0 2 0 0 1 1 0 0 2 0 1 0 0 0 0 0 9 0 853.46577 A0A024RC67;O43663;G3V3N7;H0YL53 A0A024RC67 476 484 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.0064086 64.265 2 0.7256 0.728 0.29798 2 Median 0.7256 0.728 0.29798 2 0 Median NaN NaN NaN 0 0 Median 21123000 12054000 9068800 21123000 12054000 9068800 0 0 0 5093 353 5219 13383;13384 20900;20901;20902 20900 3 GLAQADGTLITCVDSGILR FQGQRHCPGGEGMFRGLAQADGTLITCVDS ADGTLITCVDSGILRVWHDKDKDTSSDPLL R G L L R V 2 1 0 2 1 1 0 3 0 2 3 0 0 0 0 1 2 0 0 1 0 0 19 0 1959.0095 Q6RFH5;E9PS41;B4E018 Q6RFH5 92 110 WDR74 WD repeat-containing protein 74 yes no 2 4.3323E-51 169.79 2 2 1.033 0.99896 7.9843 4 Median 0.8753 0.92869 7.8212 2 0 Median 1.2047 1.0372 2.8179 2 0 Median 143600000 68268000 75330000 76202000 37812000 38390000 67396000 30456000 36941000 5094 1859 5220 13385;13386;13387;13388 20903;20904;20905;20906;20907;20908 20907 6 GLASPLGHR VSGGQSGLVRIHFVRGLASPLGHRMQLESR RIHFVRGLASPLGHRMQLESRAHFNAMFQP R G L H R M 1 1 0 0 0 0 0 2 1 0 2 0 0 0 1 1 0 0 0 0 0 0 9 0 906.50355 Q8WUA4;Q53SY8;H0Y4Q6 Q8WUA4 868 876 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2;3 0.0059202 58.426 3 0.99378 1.0458 NaN 1 Median 0.99378 1.0458 NaN 1 0 Median NaN NaN NaN 0 0 Median 52647000 39899000 12748000 52647000 39899000 12748000 0 0 0 5095 1938 5221 13389;13390;13391 20909;20910;20911;20912 20912 4 GLAYVEYENESQASQAVMK VKDLRLVTNRAGKPKGLAYVEYENESQASQ VEYENESQASQAVMKMDGMTIKENIIKVAI K G L M K M 3 0 1 0 0 2 3 1 0 0 1 1 1 0 0 2 0 0 2 2 0 0 19 0 2115.9783 Q15020;B4DYA2;H0YHU8 Q15020 842 860 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0095333 41.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5096 1748 5222 13392 20913 20913 1598 1 GLCAIAQAESLR PEGSVELYAEKVATRGLCAIAQAESLRYKL ATRGLCAIAQAESLRYKLLGGLAVRRACYG R G L L R Y 3 1 0 0 1 1 1 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1287.6605 P23396;Q53G83;F2Z2S8;H0YCJ7;H0YF32;A7E2S3;Q9NQS8 P23396 95 106 RPS3 40S ribosomal protein S3 yes no 2 9.314E-08 107.21 1 2 0.92147 0.78924 3.3577 2 Median NaN NaN NaN 0 0 Median 0.92147 0.78924 3.3577 2 0 Median 55970000 28350000 27620000 0 0 0 55970000 28350000 27620000 5097 1511 5223 13393;13394;13395 20914;20915;20916;20917 20914 3 GLCESVVEADLVEALEK GSHHKVSVSPVVHVRGLCESVVEADLVEAL CESVVEADLVEALEKFGTICYVMMMPFKRQ R G L E K F 2 0 0 1 1 0 4 1 0 0 3 1 0 0 0 1 0 0 0 3 0 0 17 0 1859.9186 B7WPG3;C9IYN3;A8K894;D6W592;A0A0S2Z6K1;A0A0S2Z5U3;Q8WVV9;A0A0S2Z610;C9JJZ7;H7BXH8 B7WPG3 82 98 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 2 0.0001499 54.871 1 1.5011 1.534 NaN 1 Median 1.5011 1.534 NaN 1 0 Median NaN NaN NaN 0 0 Median 4383000 1837100 2545800 4383000 1837100 2545800 0 0 0 5098 586 5224 13396 20918;20919 20918 2 GLDFALLQK SKFLGGDMEHTHLVKGLDFALLQKVRAEIA HTHLVKGLDFALLQKVRAEIASKEKEEEEL K G L Q K V 1 0 0 1 0 1 0 1 0 0 3 1 0 1 0 0 0 0 0 0 0 0 9 0 1003.5702 Q9UK43;Q95HA6;B2R5Y4;Q13123;Q9Y3Z5;D6REL4;Q9H4P6;E7EQZ7 Q9UK43 165 173 CSA2;IK;DKFZp564B112 Protein Red yes no 2 0.00036965 100.45 2 1.1064 1.1211 5.4244 2 Median 1.1064 1.1211 5.4244 2 0 Median NaN NaN NaN 0 0 Median 15305000 7575800 7728800 15305000 7575800 7728800 0 0 0 5099 838 5225 13397;13398 20920;20921;20922;20923;20924 20920 5 GLDIEGVK DEQIDILVATDVAARGLDIEGVKTVINFTM ATDVAARGLDIEGVKTVINFTMPNTIKHYV R G L V K T 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 495 502 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.0083247 79.116 2 0.91631 1.0305 1.0189 2 Median 0.91631 1.0305 1.0189 2 0 Median NaN NaN NaN 0 0 Median 162570000 90299000 72272000 162570000 90299000 72272000 0 0 0 5100 899;1099 5226 13399;13400 20925;20926;20927;20928 20927 4 GLDIPEVDLVIQSSPPK NGSFGVLVATNVAARGLDIPEVDLVIQSSP DIPEVDLVIQSSPPKDVESYIHRSGRTGRA R G L P K D 0 0 0 2 0 1 1 1 0 2 2 1 0 0 3 2 0 0 0 2 0 0 17 0 1805.9775 Q9NR30 Q9NR30 500 516 DDX21 Nucleolar RNA helicase 2 yes yes 2 2.9056E-07 97.463 2 2 1.1682 1.3521 16.825 4 Linear 1.1466 1.3133 3.0076 2 0 Median 1.1864 0.98307 1.1609 2 0 Median 445960000 209710000 236260000 367420000 173330000 194090000 78541000 36373000 42169000 5101 2065 5227 13401;13402;13403;13404 20929;20930;20931;20932;20933;20934;20935;20936;20937 20932 9 GLDIPEVDWIVQYDPPDDPK NADSGTLLCTDVAARGLDIPEVDWIVQYDP EVDWIVQYDPPDDPKEYIHRVGRTARGLNG R G L P K E 0 0 0 5 0 1 1 1 0 2 1 1 0 0 4 0 0 1 1 2 0 0 20 0 2310.1056 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452;Q59FR7 Q4ZG72 364 383 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.00058251 36.292 2 0.92992 1.0165 2.7229 2 Median 0.92992 1.0165 2.7229 2 0 Median NaN NaN NaN 0 0 Median 88850000 47283000 41567000 88850000 47283000 41567000 0 0 0 5102 303 5228 13405;13406 20938;20939 20939 2 GLDISHISQR QETADVKASVLLGSRGLDISHISQRLESLS LLGSRGLDISHISQRLESLSAATTFEPLEP R G L Q R L 0 1 0 1 0 1 0 1 1 2 1 0 0 0 0 2 0 0 0 0 0 0 10 0 1124.5938 Q8N1F7;A8K897;H3BVG0;H3BV11;H3BRI8;H3BM93;H3BNN5 Q8N1F7 68 77 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00024632 78.113 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5103 1904 5229 13407 20940 20940 1 GLDISNVK SGKSPILVATAVAARGLDISNVKHVINFDL ATAVAARGLDISNVKHVINFDLPSDIEEYV R G L V K H 0 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 844.46543 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A0J9YVQ7 A0A0D9SFB3 504 511 DDX3X ATP-dependent RNA helicase DDX3X yes no 1 0.019189 107.29 2 1.0475 1.0822 10.723 2 Median 1.0475 1.0822 10.723 2 0 Median NaN NaN NaN 0 0 Median 37779000 18582000 19197000 37779000 18582000 19197000 0 0 0 5104 522 5230 13408;13409 20941;20942 20942 0 GLDNTEFQGK FVHMERAEDAVEAIRGLDNTEFQGKRMHVQ VEAIRGLDNTEFQGKRMHVQLSTSRLRTAP R G L G K R 0 0 1 1 0 1 1 2 0 0 1 1 0 1 0 0 1 0 0 0 0 0 10 0 1107.5197 A8K9U0;Q9BWF3;E9PB51;Q9BQ04 A8K9U0 130 139 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 3.8391E-05 89.698 1 2 0.92761 0.76941 NaN 1 Median NaN NaN NaN 0 0 Median 0.92761 0.76941 NaN 1 0 Median 1577100 736000 841060 0 0 0 1577100 736000 841060 5105 788 5231 13410;13411;13412 20943;20944;20945 20943 3 GLDPVEILQER LHQKQSRITPIQKPRGLDPVEILQEREYRL QKPRGLDPVEILQEREYRLQARIAHRIQEL R G L E R E 0 1 0 1 0 1 2 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1267.6772 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;A5D6X0 A7E2E1 360 370 SMARCA4 Transcription activator BRG1 yes no 2 5.2644E-08 117.02 2 2 0.75685 0.80839 9.2023 2 Median 0.75685 0.80839 9.2023 2 0 Median NaN NaN NaN 0 0 Median 90886000 42583000 48303000 75163000 42583000 32580000 15722000 0 15722000 5106 695 5232 13413;13414;13415;13416 20946;20947;20948;20949;20950;20951 20946 6 GLDPYNVLAPK QATGLEREIMLAAKKGLDPYNVLAPKGASG AAKKGLDPYNVLAPKGASGTREDPNLVPSI K G L P K G 1 0 1 1 0 0 0 1 0 0 2 1 0 0 2 0 0 0 1 1 0 0 11 0 1185.6394 P10606;Q6FHM4;Q6FHJ9 P10606 58 68 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes no 2 0.00022135 90.657 3 2 1.0758 0.85897 22.23 3 Median 1.1323 1.2319 NaN 1 0 Median 1.062 0.83988 3.18 2 0 Median 99303000 29739000 69564000 92342000 26459000 65882000 6961500 3279400 3682200 5107 1465 5233 13417;13418;13419;13420;13421 20952;20953;20954;20955;20956;20957;20958 20955 7 GLDSLFSYLQDK EKECLMLKQLWSSSKGLDSLFSYLQDKIYE SSKGLDSLFSYLQDKIYEV___________ K G L D K I 0 0 0 2 0 1 0 1 0 0 3 1 0 1 0 2 0 0 1 0 0 0 12 0 1384.6874 A0A0B4J291;Q8N8U2 A0A0B4J291 492 503 CDYL2 Chromodomain Y-like protein 2 yes no 2 1.2288E-22 154.84 2 2 1.4068 1.308 10.342 4 Median 1.3455 1.421 0.45755 2 0 Median 1.4878 1.1896 2.1604 2 0 Median 106210000 44683000 61524000 66468000 29520000 36948000 39740000 15164000 24576000 5108 503 5234 13422;13423;13424;13425 20959;20960;20961;20962;20963;20964;20965 20960 7 GLDVDSLVIEHIQVNK LLHMLKNAESNAELKGLDVDSLVIEHIQVN LDVDSLVIEHIQVNKAPKMRRRTYRAHGRI K G L N K A 0 0 1 2 0 1 1 1 1 2 2 1 0 0 0 1 0 0 0 3 0 0 16 0 1777.9574 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A4D1R6;A4D1R5 A0A087WXM6 106 121 RPL17;hCG_24487;RPL17-C18orf32;LOC402695;LOC202789 60S ribosomal protein L17 yes no 2;3 1.2677E-33 196.11 8 4 0.71937 0.73983 11.086 11 Median 0.69711 0.75685 13.964 7 0 Median 0.84827 0.7378 4.2722 4 0 Median 1828700000 1036000000 792700000 946030000 562950000 383070000 882650000 473020000 409630000 5109 106 5235 13426;13427;13428;13429;13430;13431;13432;13433;13434;13435;13436;13437 20966;20967;20968;20969;20970;20971;20972;20973;20974;20975;20976;20977;20978;20979;20980;20981;20982;20983;20984;20985;20986;20987;20988;20989;20990;20991;20992;20993;20994 20991 28 GLDVEDVK HGKAPILIATDVASRGLDVEDVKFVINYDY ATDVASRGLDVEDVKFVINYDYPNSSEDYI R G L V K F 0 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 873.44436 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q59F66;Q92841 B4DN41 393 400 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 2 0.0048606 87.754 2 1.6105 1.8264 NaN 1 Median 1.6105 1.8264 NaN 1 0 Median NaN NaN NaN 0 0 Median 94526000 34960000 59566000 94526000 34960000 59566000 0 0 0 5110 1009;1801 5236 13438;13439 20995;20996;20997 20997 3 GLDVPQVSLIINYDLPNNR SGASRVLISTDVWARGLDVPQVSLIINYDL PQVSLIINYDLPNNRELYIHRIGRSGRYGR R G L N R E 0 1 3 2 0 1 0 1 0 2 3 0 0 0 2 1 0 0 1 2 0 0 19 0 2139.1324 A0A024R8W0;P38919 A0A024R8W0 340 358 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 6.8369E-06 77.776 2 1.9674 2.1225 1.4397 2 Median 1.9674 2.1225 1.4397 2 0 Median NaN NaN NaN 0 0 Median 84608000 28531000 56078000 84608000 28531000 56078000 0 0 0 5111 261 5237 13440;13441 20998;20999;21000;21001 21001 4 GLDYLHSEK FDEFQIATMLKEILKGLDYLHSEKKIHRDI LKEILKGLDYLHSEKKIHRDIKAANVLLSE K G L E K K 0 0 0 1 0 0 1 1 1 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1060.5189 Q8NBY1;B4E0Y9;Q9P289;Q9NWX4;Q499L9;B4DMR0;H0Y630;B4DR80;Q6P0Y1;Q5U0E6;B4DT57;Q9Y6E0;Q6FG81 Q8NBY1 131 139 STK26;MST4;STK24;HEL-S-95 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 2 0.031658 52.482 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6185800 0 6185800 6185800 0 6185800 0 0 0 5112 1065 5238 13442;13443;13444 21002;21003;21004 21004 3 GLEALLADPQQK QGTEPLVLFKEGAVRGLEALLADPQQKIET AVRGLEALLADPQQKIETVISDEEVIKWTK R G L Q K I 2 0 0 1 0 2 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 12 0 1281.6929 Q9H8H0;J3QR28;J3QLQ6 Q9H8H0 131 142 NOL11 Nucleolar protein 11 yes no 2 0.00018073 74.841 1 0.7401 0.8275 NaN 1 Median 0.7401 0.8275 NaN 1 0 Median NaN NaN NaN 0 0 Median 107240000 57496000 49743000 107240000 57496000 49743000 0 0 0 5113 2042 5239 13445 21005 21005 1 GLECNFGASSTALK LNEDCSKTQPCDHTKGLECNFGASSTALKG KGLECNFGASSTALKGICRAQSEGRPCEYN K G L L K G 2 0 1 0 1 0 1 2 0 0 2 1 0 1 0 2 1 0 0 0 0 0 14 0 1453.6871 B4DI61;Q6FI18;O00622;Q53FA4;Q9UID7 B4DI61 51 64 CYR61 Protein CYR61 yes no 2 1.6849E-09 106.67 1 2 1.4019 1.1104 1.4848 2 Median NaN NaN NaN 0 0 Median 1.4019 1.1104 1.4848 2 0 Median 93666000 12753000 80913000 61596000 0 61596000 32070000 12753000 19317000 5114 979 5240 13446;13447;13448 21006;21007;21008;21009;21010;21011;21012 21006 7 GLEDPSQVVR IRQRLLPPLLQIVCKGLEDPSQVVRNAALF QIVCKGLEDPSQVVRNAALFALGQFSENLQ K G L V R N 0 1 0 1 0 1 1 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 10 0 1098.5669 H0YN14;D3DS63;B3KTB3;B3KT38;B3KPS9;Q59FI4;Q8TEX9;B3KPY9;Q6I9Y8;B3KSQ4;Q59H62;B3KQ33 H0YN14 402 411 IPO4 Importin-4 yes no 2 0.0026728 68.016 2 1.0669 1.0674 18.816 2 Median 1.0669 1.0674 18.816 2 0 Median NaN NaN NaN 0 0 Median 22154000 10218000 11936000 22154000 10218000 11936000 0 0 0 5115 923 5241 13449;13450 21013;21014 21014 2 GLEEITVHNK QMFDDPRNKRGVIIKGLEEITVHNKDEVYQ GVIIKGLEEITVHNKDEVYQILEKGAAKRT K G L N K D 0 0 1 0 0 0 2 1 1 1 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1138.5982 P52732;B2RAM6 P52732 198 207 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.0020738 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5116 1602 5242 13451 21015 21015 1 GLEGERPAR TLRRSRPETGRPRPKGLEGERPARLTRGEA GRPRPKGLEGERPARLTRGEADRDTYRRSA K G L A R L 1 2 0 0 0 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 9 1 983.51484 P46783;Q59GE4;F6U211;S4R435;Q14489 P46783 108 116 RPS10;RPS10-NUDT3 40S ribosomal protein S10 yes no 2;3 0.0086405 83.265 2 1.1813 1.2854 1.4577 2 Median 1.1813 1.2854 1.4577 2 0 Median NaN NaN NaN 0 0 Median 150710000 67272000 83438000 150710000 67272000 83438000 0 0 0 5117 1573 5243 13452;13453 21016;21017;21018 21016 3 GLELDVVTIR ETLKAKIEGMTQSLRGLELDVVTIRSEKEN TQSLRGLELDVVTIRSEKENLTNELQKEQE R G L I R S 0 1 0 1 0 0 1 1 0 1 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1113.6394 P49454 P49454 2478 2487 CENPF Centromere protein F yes yes 2 0.0033711 76.827 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17682000 0 17682000 17682000 0 17682000 0 0 0 5118 1581 5244 13454;13455 21019;21020 21020 2 GLELLAASEAPRDPPGQAK ______________________________ LAASEAPRDPPGQAKPRGAPVKRPRKTKAI R G L A K P 4 1 0 1 0 1 2 2 0 0 3 1 0 0 3 1 0 0 0 0 0 0 19 1 1919.0112 A0A024R1T1;Q86WX3;F8WFE7 A0A024R1T1 9 27 RPS19BP1 Active regulator of SIRT1 yes no 2;3 1.1993E-05 52.784 2 2 1.247 1.2753 9.7136 3 Plateau 1.1046 1.2753 NaN 1 0 Median 1.3015 1.0964 6.0421 2 0 Median 43866000 22243000 21623000 28271000 15486000 12785000 15595000 6757000 8837900 5119 87 5245 13456;13457;13458;13459 21021;21022;21023;21024;21025;21026 21025 5 GLENPLPERPR SLDPSNRKPLTVLNKGLENPLPERPREKEE VLNKGLENPLPERPREKEEPVVRETGEVVD K G L P R E 0 2 1 0 0 0 2 1 0 0 2 0 0 0 3 0 0 0 0 0 0 0 11 1 1276.6888 P53350;B2R841;B4E083;Q59GD0;D3DWF3 P53350 346 356 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 3 0.0008324 61.344 1 0.82878 0.95883 NaN 1 Median 0.82878 0.95883 NaN 1 0 Median NaN NaN NaN 0 0 Median 72615000 39484000 33132000 72615000 39484000 33132000 0 0 0 5120 1604 5246 13460 21027 21027 1 GLESLPPLRPQQNPVLPVAGER LSEEEIAMAVTAWEKGLESLPPLRPQQNPV LRPQQNPVLPVAGERNVLITSALPYVNNVP K G L E R N 1 2 1 0 0 2 2 2 0 0 4 0 0 0 5 1 0 0 0 2 0 0 22 1 2366.307 A8K492;P56192;B4DF61;B4E0E9;A0A024RBA2 A8K492 243 264 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 4.6583E-09 79.635 2 2 2.0125 1.999 65.427 4 Median 3.0688 3.42 6.3995 2 0 Median 1.2628 1.112 13.392 2 0 Median 91022000 28527000 62495000 78101000 22005000 56095000 12922000 6521800 6399800 5121 732 5247 13461;13462;13463;13464 21028;21029;21030;21031;21032;21033 21029 6 GLEVTDDSPK LIMLDIYAIEELRARGLEVTDDSPKYNYHL ELRARGLEVTDDSPKYNYHLDSSGSYVFEN R G L P K Y 0 0 0 2 0 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1059.5084 P49588 P49588 477 486 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.0025181 80.165 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11757000 0 11757000 11757000 0 11757000 0 0 0 5122 1583 5248 13465;13466 21034;21035 21035 2 GLEWVANIK FSSYWMSWVRQAPGKGLEWVANIKQDGSEK RQAPGKGLEWVANIKQDGSEKYYVDSVKGR K G L I K Q 1 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 9 0 1028.5655 Q9ULB6;A0A0F7TD49;Q0ZCH7;Q0ZCH4;Q0ZCG0;Q0ZCF9;Q0ZCJ4;Q0ZCJ5;Q0ZCH9;Q0ZCJ2;Q0ZCI8;Q0ZCJ0;A0A0X9USM3;V9HW68;P01780 Q9ULB6 43 51 VH;HEL-214 Ig heavy chain V-III region JON yes no 2 0.0061036 65.038 3 1 0.59954 0.67006 6.6996 4 Median 0.57698 0.67925 8.0801 3 0 Median 0.82437 0.66101 NaN 1 0 Median 956610000 586840000 369780000 937430000 575930000 361490000 19186000 10902000 8284100 5123 532 5249 13467;13468;13469;13470 21036;21037;21038;21039;21040 21036 5 GLFIIDDK QDYGVLKADEGISFRGLFIIDDKGILRQIT DEGISFRGLFIIDDKGILRQITVNDLPVGR R G L D K G 0 0 0 2 0 0 0 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 919.50148 Q06830;A0A0A0MSI0;B2R4P2;A0A0A0MRQ5;H7C3T4;V9HW63;Q13162 Q06830 129 136 PRDX1;PRDX4;HEL-S-97n Peroxiredoxin-1;Peroxiredoxin-4 yes no 2 0.012282 67.981 2 2.9053 3.2979 3.0636 2 Median 2.9053 3.2979 3.0636 2 0 Median NaN NaN NaN 0 0 Median 234480000 63276000 171210000 234480000 63276000 171210000 0 0 0 5124 1690 5250 13471;13472 21041;21042;21043;21044 21041 4 GLFIIDPNGVIK RDYGVLLEGSGLALRGLFIIDPNGVIKHLS ALRGLFIIDPNGVIKHLSVNDLPVGRSVEE R G L I K H 0 0 1 1 0 0 0 2 0 3 1 1 0 1 1 0 0 0 0 1 0 0 12 0 1284.7442 Q53HC2;P30048 Q53HC2 185 196 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 2 0.0002174 82.287 1 1 2.2731 2.1274 57.29 2 Median 3.1105 3.1899 NaN 1 0 Median 1.6612 1.4188 NaN 1 0 Median 14446000 4185700 10260000 13022000 3569800 9451900 1424300 615880 808420 5125 1530 5251 13473;13474 21045;21046;21047 21045 3 GLFSANDWQCK AGGTEIGKTLAEKSRGLFSANDWQCKTCSN EKSRGLFSANDWQCKTCSNVNWARRSECNM R G L C K T 1 0 1 1 1 1 0 1 0 0 1 1 0 1 0 1 0 1 0 0 0 0 11 0 1324.587 O95218 O95218 62 72 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes yes 2 0.050218 44.203 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2932000 0 2932000 2932000 0 2932000 0 0 0 5126 1420 5252 13475 21048 21048 1 GLFTGLTPR LFSYAQHIASIDGRRGLFTGLTPRLCSGVL SIDGRRGLFTGLTPRLCSGVLGTVVHGKVL R G L P R L 0 1 0 0 0 0 0 2 0 0 2 0 0 1 1 0 2 0 0 0 0 0 9 0 960.53927 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 69 77 MTCH2 Mitochondrial carrier homolog 2 yes no 2 0.0010726 90.37 2 1.3857 1.5257 6.3792 2 Median 1.3857 1.5257 6.3792 2 0 Median NaN NaN NaN 0 0 Median 133540000 57096000 76442000 133540000 57096000 76442000 0 0 0 5127 2152 5253 13476;13477 21049;21050;21051;21052 21050 4 GLFTLFAGHLVK LTFYNLADCIAEKLKGLFTLFAGHLVKPFA KLKGLFTLFAGHLVKPFADTLDQVNISKTD K G L V K P 1 0 0 0 0 0 0 2 1 0 3 1 0 2 0 0 1 0 0 1 0 0 12 0 1301.7496 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1949 1960 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.9678E-05 103.55 2 2 1.0123 0.92838 3.1364 4 Median 0.89939 0.92838 0.80645 2 0 Median 1.1255 0.90386 4.658 2 0 Median 57559000 29732000 27827000 44402000 23640000 20761000 13157000 6091500 7065700 5128 897 5254 13478;13479;13480;13481 21053;21054;21055;21056;21057;21058;21059;21060 21053 8 GLFYFDNSFRPVPLEQTYVGITEK NYEDVATFLRVDPAKGLFYFDNSFRPVPLE RPVPLEQTYVGITEKKAIKRFQIMNEIVYE K G L E K K 0 1 1 1 0 1 2 2 0 1 2 1 0 3 2 1 2 0 2 2 0 0 24 1 2819.417 O75643;A4FU77 O75643 672 695 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.0030417 37.896 2 0.8122 0.87583 NaN 1 Median 0.8122 0.87583 NaN 1 0 Median NaN NaN NaN 0 0 Median 19022000 14073000 4949200 19022000 14073000 4949200 0 0 0 5129 1411 5255 13482;13483 21061;21062 21062 2 GLGAGAGAGEESPATSLPR VLLGAYRLWVRWGRRGLGAGAGAGEESPAT GAGAGEESPATSLPRMKKRDFSLEQLRQYD R G L P R M 4 1 0 0 0 0 2 5 0 0 2 0 0 0 2 2 1 0 0 0 0 0 19 0 1696.838 O15173 O15173 79 97 PGRMC2 Membrane-associated progesterone receptor component 2 yes yes 2 4.6451E-06 72.891 2 1 0.59026 0.55516 65.796 2 Median 0.88919 0.88403 NaN 1 0 Median 0.39183 0.34863 NaN 1 0 Median 12071000 8200200 3870900 11185000 7572800 3612500 885840 627360 258470 5130 1377 5256 13484;13485;13486 21063;21064;21065;21066 21063 4 GLGAQEQGATDHIK FGQRMLEKMGWSKGKGLGAQEQGATDHIKV KGLGAQEQGATDHIKVQVKNNHLGLGATIN K G L I K V 2 0 0 1 0 2 1 3 1 1 1 1 0 0 0 0 1 0 0 0 0 0 14 0 1423.7056 Q96BK5;E5RJG9;E5RGR1;A0A0A6YYK5 Q96BK5 44 57 PINX1 PIN2/TERF1-interacting telomerase inhibitor 1 yes no 2 1.4395E-31 152.67 2 0.65038 0.65335 NaN 1 Median 0.65038 0.65335 NaN 1 0 Median NaN NaN NaN 0 0 Median 14331000 11401000 2929500 14331000 11401000 2929500 0 0 0 5131 1960 5257 13487;13488 21067;21068 21068 2 GLGATFILR KISQFLGICIQRSGRGLGATFILRNVIEGQ IQRSGRGLGATFILRNVIEGQGVEICFELY R G L L R N 1 1 0 0 0 0 0 2 0 1 2 0 0 1 0 0 1 0 0 0 0 0 9 0 946.56 S4R3W9;A0A0A0MRF4;B4DIG4;A8K5D5;P49406 S4R3W9 46 54 MRPL19 39S ribosomal protein L19, mitochondrial yes no 2 0.0019822 80.229 2 1.4451 1.4691 NaN 1 Median 1.4451 1.4691 NaN 1 0 Median NaN NaN NaN 0 0 Median 22145000 14127000 8017500 22145000 14127000 8017500 0 0 0 5132 465 5258 13489;13490 21069;21070 21069 2 GLGATTHPTAAVK TLLEISKRFRKEMEKGLGATTHPTAAVKML EKGLGATTHPTAAVKMLPTFVRSTPDGTEH K G L V K M 3 0 0 0 0 0 0 2 1 0 1 1 0 0 1 0 3 0 0 1 0 0 13 0 1222.667 Q68E10;E9PB90;A8K2U2;P52789;Q53SG7 Q68E10 22 34 DKFZp686M1669;HK2 Hexokinase;Hexokinase-2 yes no 2 9.2833E-09 115.82 1 8.3391 8.4868 NaN 1 Median 8.3391 8.4868 NaN 1 0 Median NaN NaN NaN 0 0 Median 12445000 1704000 10741000 12445000 1704000 10741000 0 0 0 5133 714 5259 13491 21071 21071 1 GLGGIMVK GTKTPINRNQLSQNRGLGGIMVKRAYETMA NQLSQNRGLGGIMVKRAYETMAGAGVPFSA R G L V K R 0 0 0 0 0 0 0 3 0 1 1 1 1 0 0 0 0 0 0 1 0 0 8 0 773.44695 A0A024R534;O94776 A0A024R534 552 559 MTA2 Metastasis-associated protein MTA2 yes no 2 0.024565 41.302 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24108000 0 24108000 24108000 0 24108000 0 0 0 5134 168 5260 13492 21072 21072 143 1 GLGILSLK AERKGAAYGLAGLVKGLGILSLKQQEMMAA GLAGLVKGLGILSLKQQEMMAALTDAIQDK K G L L K Q 0 0 0 0 0 0 0 2 0 1 3 1 0 0 0 1 0 0 0 0 0 0 8 0 799.51674 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1407 1414 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.024726 58.917 2 1.8247 1.8215 NaN 1 Median 1.8247 1.8215 NaN 1 0 Median NaN NaN NaN 0 0 Median 19976000 4685900 15290000 19976000 4685900 15290000 0 0 0 5135 1205 5261 13493;13494 21073;21074;21075 21074 3 GLGLDDALEPR DVTRIERIGAHSHIRGLGLDDALEPRQASQ SHIRGLGLDDALEPRQASQGMVGQLAARRA R G L P R Q 1 1 0 2 0 0 1 2 0 0 3 0 0 0 1 0 0 0 0 0 0 0 11 0 1154.5932 Q9Y230;B4DW30;X6R2L4;M0R0Z0 Q9Y230 30 40 RUVBL2 RuvB-like 2 yes no 2 8.7899E-06 109.29 2 2 1.0089 0.97605 6.7172 4 Median 0.79717 0.91404 3.1943 2 0 Median 1.2496 1.0221 0.4371 2 0 Median 351580000 191040000 160540000 324770000 178630000 146140000 26806000 12407000 14398000 5136 2120 5262 13495;13496;13497;13498 21076;21077;21078;21079;21080;21081;21082;21083;21084 21079 9 GLGLDESGLAK STTKTQRIASHSHVKGLGLDESGLAKQAAS SHVKGLGLDESGLAKQAASGLVGQENAREA K G L A K Q 1 0 0 1 0 0 1 3 0 0 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1058.5608 B5BUB1;Q9Y265 B5BUB1 23 33 RUVBL1 RuvB-like 1 yes no 2 0.00043772 78.516 2 2 1.0446 0.99427 1.5252 4 Median 0.87002 0.99427 0.78183 2 0 Median 1.2574 1.0024 2.3886 2 0 Median 366890000 196800000 170090000 340540000 185380000 155160000 26343000 11416000 14927000 5137 1076 5263 13499;13500;13501;13502 21085;21086;21087;21088;21089;21090;21091;21092;21093 21087 9 GLGLSPDLVVCR EQKTKPTQNSVRELRGLGLSPDLVVCRCSN ELRGLGLSPDLVVCRCSNPLDTSVKEKISM R G L C R C 0 1 0 1 1 0 0 2 0 0 3 0 0 0 1 1 0 0 0 2 0 0 12 0 1284.686 P17812;B4E1E0;B4DMB5;B7Z9C4 P17812 206 217 CTPS1 CTP synthase 1;CTP synthase yes no 2 2.5428E-05 100.02 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18525000 1972200 16553000 16553000 0 16553000 1972200 1972200 0 5138 1494 5264 13503;13504 21094;21095;21096 21095 3 GLGQLIR VDIILPQITSNMWARGLGQLIRAKNIKTIG ITSNMWARGLGQLIRAKNIKTIGDLSTLTA R G L I R A 0 1 0 0 0 1 0 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 755.46537 Q5UIP0;H7C2B5 Q5UIP0 2317 2323 RIF1 Telomere-associated protein RIF1 yes no 2 0.051768 57.453 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2088500 0 2088500 2088500 0 2088500 0 0 0 5139 1829 5265 13505 21097 21097 1 GLGSGLQPWCPLDLR ______________________________ GLGSGLQPWCPLDLRLEWVDTVWELDFTET R G L L R L 0 1 0 1 1 1 0 3 0 0 4 0 0 0 2 1 0 1 0 0 0 0 15 0 1667.8454 P42695;G3V1A9;E9PKK4;E9PJ63;E9PL84;E9PJM8;E9PR72;E9PL95 P42695 6 20 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.00025347 61.435 1 1.7015 1.3843 NaN 1 Median NaN NaN NaN 0 0 Median 1.7015 1.3843 NaN 1 0 Median 9784200 3854700 5929500 0 0 0 9784200 3854700 5929500 5140 1565 5266 13506 21098 21098 1 GLGTDEDSLIEIICSR TPAQYDASELKASMKGLGTDEDSLIEIICS LGTDEDSLIEIICSRTNQELQEINRVYKEM K G L S R T 0 1 0 2 1 0 2 2 0 3 2 0 0 0 0 2 1 0 0 0 0 0 16 0 1776.8564 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YKS4;B4DNH8;H0YMM1;H0YM50;A6NMY6;H0YNP5;H0YNA0;H0YN28;H0YL33;B3KRQ1;H0YN52;H0YLE2 V9HW65 120 135 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2 0.00015449 70.412 2 2 0.74339 0.70981 53.949 4 Median 1.0883 1.1188 1.9194 2 0 Median 0.50707 0.44018 5.1474 2 0 Median 26490000 12758000 13732000 21765000 9683600 12081000 4725300 3074400 1650900 5141 193 5267 13507;13508;13509;13510 21099;21100;21101;21102;21103 21101 5 GLGTDEESILTLLTSR FDERADAETLRKAMKGLGTDEESILTLLTS LGTDEESILTLLTSRSNAQRQEISAAFKTL K G L S R S 0 1 0 1 0 0 2 2 0 1 4 0 0 0 0 2 3 0 0 0 0 0 16 0 1703.8941 V9HWE0;P08758;B4DNG6;E9PHT9 V9HWE0 30 45 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 2 0.00087574 62.924 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5142 1459 5268 13511 21104 21104 1 GLGTGQGAVSGPPR KPEEPPPPKKPALDKGLGTGQGAVSGPPRK KGLGTGQGAVSGPPRKPPGTVAGTARGPEG K G L P R K 1 1 0 0 0 1 0 5 0 0 1 0 0 0 2 1 1 0 0 1 0 0 14 0 1252.6524 A0A024R570;A0A024R5E3;E7EN32;A0A024R5D2;O00255;Q9UE24;G9G6R5 A0A024R570 468 481 MEN1 Menin yes no 2 4.0953E-05 94.465 2 2 1.3049 1.0933 33.694 3 Median 0.62904 0.63358 NaN 1 0 Median 1.3373 1.1321 4.9342 2 0 Median 35440000 23537000 11903000 24652000 18686000 5966200 10788000 4850700 5937100 5143 171 5269 13512;13513;13514;13515 21105;21106;21107;21108;21109;21110;21111;21112 21110 8 GLGTGTLYIAESR LLRQQPDTEAVLNGKGLGTGTLYIAESRLS GKGLGTGTLYIAESRLSWLDGSGLGFSLEY K G L S R L 1 1 0 0 0 0 1 3 0 1 2 0 0 0 0 1 2 0 1 0 0 0 13 0 1336.6987 E9PJF4;P54105;E9PMI6;J3KN38 E9PJF4 31 43 CLNS1A Methylosome subunit pICln yes no 2 0.00013556 73.632 1 1 1.375 1.3426 68.066 2 Median 1.9844 2.1725 NaN 1 0 Median 0.95278 0.82968 NaN 1 0 Median 35347000 12252000 23095000 32732000 10957000 21775000 2614800 1295100 1319700 5144 1241 5270 13516;13517 21113;21114 21114 2 GLGVGFGSGGGSSSSVK GLSVGGSGFSASSGRGLGVGFGSGGGSSSS GVGFGSGGGSSSSVKFVSTTSSSRKSFKS_ R G L V K F 0 0 0 0 0 0 0 7 0 0 1 1 0 1 0 5 0 0 0 2 0 0 17 0 1438.7052 CON__P13647;P13647;B4E1T1 CON__P13647 560 576 KRT5 Keratin, type II cytoskeletal 5 yes no 2 0.00668 48.044 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12133000 12133000 0 12133000 12133000 0 0 0 0 + 5145 1162 5271 13518 21115;21116 21115 2 GLIEIISNAAEYENIPIR IELFSMSLNAKTKVRGLIEIISNAAEYENI EIISNAAEYENIPIRHHEDNLLRQLAQKVP R G L I R H 2 1 2 0 0 0 3 1 0 5 1 0 0 0 1 1 0 0 1 0 0 0 18 0 2014.0735 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5;Q7L5W4;Q9P172 O75643 1844 1861 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 8.3106E-30 174.73 3 0.95685 1.0102 6.808 2 Median 0.95685 1.0102 6.808 2 0 Median NaN NaN NaN 0 0 Median 64318000 32459000 31859000 64318000 32459000 31859000 0 0 0 5146 1411 5272 13519;13520;13521 21117;21118;21119;21120;21121;21122 21119 6 GLIQQFTTITGASESVGK ______________________________ QQFTTITGASESVGKHMLEACNNNLEMAVT K G L G K H 1 0 0 0 0 2 1 3 0 2 1 1 0 1 0 2 3 0 0 1 0 0 18 0 1835.9629 O94888;H7BYF4 O94888 15 32 UBXN7 UBX domain-containing protein 7 yes no 2 0.044052 30.567 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7128400 7128400 0 7128400 7128400 0 0 0 0 5147 1417 5273 13522 21123 21123 1 GLIVYQLENQPSEFR ADVIYPMAVVATAERGLIVYQLENQPSEFR GLIVYQLENQPSEFRRIESPLKHQHRCVAI R G L F R R 0 1 1 0 0 2 2 1 0 1 2 0 0 1 1 1 0 0 1 1 0 0 15 0 1791.9155 Q5J8M4;P78406;E9PQ57;E9PPG9 Q5J8M4 175 189 RAE1 mRNA export factor yes no 2 1.7906E-05 89.548 1 1 0.76465 0.63985 NaN 1 Median NaN NaN NaN 0 0 Median 0.76465 0.63985 NaN 1 0 Median 7864500 6014500 1849900 3962600 3962600 0 3901900 2052000 1849900 5148 1664 5274 13523;13524 21124;21125;21126 21124 3 GLLASDLNTDGDMR PTEDDVESKKIKMERGLLASDLNTDGDMRV RGLLASDLNTDGDMRVTPEPGAGPTQGLLR R G L M R V 1 1 1 3 0 0 0 2 0 0 3 0 1 0 0 1 1 0 0 0 0 0 14 0 1476.6879 A0A024R7K7;A0A024R7M6;Q86YP4;C9JHD7;C9JJK9;V9GYX5;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4 A0A024R7K7 34 47 GATAD2A Transcriptional repressor p66-alpha yes no 2 6.1253E-05 85.958 3 1 1.2306 1.0687 NaN 1 Median NaN NaN NaN 0 0 Median 1.2306 1.0687 NaN 1 0 Median 10913000 1003400 9909700 8612900 0 8612900 2300200 1003400 1296800 5149 229 5275 13525;13526;13527;13528 21127;21128;21129;21130;21131 21130 167 5 GLLATASEDR GHVGIIFSMSYLESKGLLATASEDRSVRIW YLESKGLLATASEDRSVRIWKVGDLRVPGG K G L D R S 2 1 0 1 0 0 1 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1031.5247 A0A087X295;Q9NNW5;E9PDU5;B4E256;B4DK45;C9K020 A0A087X295 252 261 WDR6 WD repeat-containing protein 6 yes no 2 0.010129 53.775 2 0.79605 0.69734 10.362 2 Median NaN NaN NaN 0 0 Median 0.79605 0.69734 10.362 2 0 Median 2956900 1438800 1518100 0 0 0 2956900 1438800 1518100 5150 451 5276 13529;13530 21132;21133 21133 2 GLLCLGNVISALGDDK KAEGDRLKEGININRGLLCLGNVISALGDD LLCLGNVISALGDDKKGGFVPYRDSKLTRL R G L D K K 1 0 1 2 1 0 0 3 0 1 4 1 0 0 0 1 0 0 0 1 0 0 16 0 1643.8553 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 269 284 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 5.8257E-12 113.65 2 0.81672 0.88652 1.4684 2 Median 0.81672 0.88652 1.4684 2 0 Median NaN NaN NaN 0 0 Median 131450000 71472000 59979000 131450000 71472000 59979000 0 0 0 5151 1803 5277 13531;13532 21134;21135;21136;21137;21138 21137 5 GLLCLGNVISALGDDKK KAEGDRLKEGININRGLLCLGNVISALGDD LCLGNVISALGDDKKGGFVPYRDSKLTRLL R G L K K G 1 0 1 2 1 0 0 3 0 1 4 2 0 0 0 1 0 0 0 1 0 0 17 1 1771.9502 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 269 285 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2;3 2.9274E-07 97.904 2 3 1.545 1.3218 17.332 5 Median 0.9094 1.0643 9.0571 2 0 Median 1.5599 1.3275 10.018 3 0 Median 107200000 49691000 57509000 52584000 28104000 24480000 54616000 21587000 33029000 5152 1803 5278 13533;13534;13535;13536;13537 21139;21140;21141;21142;21143;21144;21145;21146;21147;21148 21141 10 GLLEDVQEGR WDLLSSCHFTEEQRRGLLEDVQEGRTTVPQ EEQRRGLLEDVQEGRTTVPQLLASVQRWVQ R G L G R T 0 1 0 1 0 1 2 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1114.5619 A0A075B730;A0A087X1U6;P58107 A0A075B730 1135 1144 EPPK1 Epiplakin no no 2 0.00126 74.464 2 1.7161 1.6928 NaN 1 Median 1.7161 1.6928 NaN 1 0 Median NaN NaN NaN 0 0 Median 14796000 6639800 8156400 14796000 6639800 8156400 0 0 0 5153 397;1622 5279 13538;13539 21149;21150;21151 21151 3 GLLEESSFATLFPK DGWKEPAFSKEDNPRGLLEESSFATLFPKY RGLLEESSFATLFPKYREAYLKECWPLVQK R G L P K Y 1 0 0 0 0 0 2 1 0 0 3 1 0 2 1 2 1 0 0 0 0 0 14 0 1537.8028 Q13601;B4DMS5 Q13601 53 66 KRR1 KRR1 small subunit processome component homolog yes no 2 7.2726E-22 149.31 2 2 1.1134 1.11 17.037 4 Median 1.1134 1.2504 2.2329 2 0 Median 1.1392 0.94317 8.4202 2 0 Median 245370000 119080000 126280000 165090000 78740000 86352000 80275000 40344000 39931000 5154 1717 5280 13540;13541;13542;13543 21152;21153;21154;21155;21156;21157;21158 21157 7 GLLINFIHHNWPSLLK IMIMTDQDQDGSHIKGLLINFIHHNWPSLL LLINFIHHNWPSLLKHGFLEEFITPIVKAS K G L L K H 0 0 2 0 0 0 0 1 2 2 4 1 0 1 1 1 0 1 0 0 0 0 16 0 1901.0676 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 544 559 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 4.5272E-05 75.574 3 2 1.0749 0.88601 1.7705 2 Median NaN NaN NaN 0 0 Median 1.0749 0.88601 1.7705 2 0 Median 93610000 53434000 40176000 22053000 18403000 3649800 71557000 35031000 36526000 5155 1679 5281 13544;13545;13546;13547;13548 21159;21160;21161;21162;21163;21164;21165;21166;21167 21164 9 GLLINFIHHNWPSLLR IMIMTDQDQDGSHIKGLLINFIHHNWPSLL LLINFIHHNWPSLLRHRFLEEFITPIVKVS K G L L R H 0 1 2 0 0 0 0 1 2 2 4 0 0 1 1 1 0 1 0 0 0 0 16 0 1929.0737 P11388 P11388 551 566 TOP2A DNA topoisomerase 2-alpha yes yes 3;4 8.8688E-13 119.54 3 10 1.2841 1.0569 39.219 11 Median 0.67557 0.74908 2.8026 3 0 Median 1.3526 1.1733 38.322 8 0 Median 543630000 278770000 264860000 261280000 154830000 106450000 282350000 123940000 158410000 5156 1471 5282 13549;13550;13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561 21168;21169;21170;21171;21172;21173;21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187;21188;21189;21190;21191;21192 21172 25 GLLKPGLNVVLEGPK ESLVTDRELQDAFSRGLLKPGLNVVLEGPK GLLKPGLNVVLEGPKKAVNDVNGLKQCLAE R G L P K K 0 0 1 0 0 0 1 3 0 0 4 2 0 0 2 0 0 0 0 2 0 0 15 1 1532.929 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 30 44 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 3 0.031946 17.242 2 1.2987 1.1449 5.6727 2 Median NaN NaN NaN 0 0 Median 1.2987 1.1449 5.6727 2 0 Median 4419600 2065700 2353900 0 0 0 4419600 2065700 2353900 5157 1316 5283 13562;13563 21193;21194 21193 2 GLLLYGPPGTGK ______________________________ PWKGLLLYGPPGTGKTLLAKAVATECKTTF K G L G K T 0 0 0 0 0 0 0 4 0 0 3 1 0 0 2 0 1 0 1 0 0 0 12 0 1171.6601 K7EM02;K7EIJ8;Q8IYT4 K7EM02 13 24 KATNAL2 Katanin p60 ATPase-containing subunit A-like 2 yes no 2 0.0012064 80.688 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16165000 0 16165000 16165000 0 16165000 0 0 0 5158 1341 5284 13564;13565 21195;21196 21196 2 GLLPEELTPLILATQK AGIAKVLVAQHDVYKGLLPEELTPLILATQ LLPEELTPLILATQKQFNYTHICAGASAFG K G L Q K Q 1 0 0 0 0 1 2 1 0 1 5 1 0 0 2 0 2 0 0 0 0 0 16 0 1735.0131 A0A0S2Z3L0;P13804;A0A0S2Z3M4;H0YL12;H0YKF0;H0YLU7 A0A0S2Z3L0 86 101 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.00017365 61.11 2 4.0565 4.1686 3.9707 2 Median 4.0565 4.1686 3.9707 2 0 Median NaN NaN NaN 0 0 Median 59553000 12900000 46653000 59553000 12900000 46653000 0 0 0 5159 553 5285 13566;13567 21197;21198;21199;21200 21197 4 GLLPGLLPAPADK SLTMSSSGSLQASPRGLLPGLLPAPADKLT PRGLLPGLLPAPADKLTPKGPGQVPTATSA R G L D K L 2 0 0 1 0 0 0 2 0 0 4 1 0 0 3 0 0 0 0 0 0 0 13 0 1260.7442 Q6P2E9;B7Z7V8 Q6P2E9 679 691 EDC4 Enhancer of mRNA-decapping protein 4 yes no 2 0.0088381 53.751 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2961100 0 2961100 2961100 0 2961100 0 0 0 5160 1853 5286 13568 21201 21201 1 GLLQPVK KASSRKRTLAEPPAKGLLQPVKLSRAELYK TLAEPPAKGLLQPVKLSRAELYKEPTNEEL K G L V K L 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 7 0 753.47487 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 48 54 NOL6 Nucleolar protein 6 yes no 2 0.04187 62.338 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42028000 0 42028000 42028000 0 42028000 0 0 0 5161 2038 5287 13569 21202 21202 1 GLLQSGQIPGR AIANASTLAEVERLKGLLQSGQIPGRERRS ERLKGLLQSGQIPGRERRSGPTDDGEEEME K G L G R E 0 1 0 0 0 2 0 3 0 1 2 0 0 0 1 1 0 0 0 0 0 0 11 0 1124.6302 Q53G61;Q53G21;P09661;H0YMA0;H0YLR3 Q53G61 222 232 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.00052993 75.043 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5162 1461 5288 13570 21203 21203 1 GLLSAEVAR PGSRQTLSIYQALKKGLLSAEVARLLLEAQ YQALKKGLLSAEVARLLLEAQAATGFLLDP K G L A R L 2 1 0 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 914.51853 Q15149;D3DWL0;Q96IE3 Q15149 3850 3858 PLEC;PLEC1 Plectin yes no 2 0.0022212 77.923 2 1 1.4304 1.4109 19.598 2 Median 1.0784 1.2283 NaN 1 0 Median 1.8974 1.6206 NaN 1 0 Median 162300000 40630000 121670000 159400000 39733000 119670000 2892700 897090 1995600 5163 1754 5289 13571;13572;13573 21204;21205;21206 21205 3 GLLSSLDHTSIR SDLELHPPSYPWSHRGLLSSLDHTSIRRGF SHRGLLSSLDHTSIRRGFQVYKQVCASCHS R G L I R R 0 1 0 1 0 0 0 1 1 1 3 0 0 0 0 3 1 0 0 0 0 0 12 0 1297.699 Q8TBT6;P08574 Q8TBT6 90 101 CYC1 Cytochrome c1, heme protein, mitochondrial yes no 2 0.011152 45.908 1 0.89586 0.90907 NaN 1 Median 0.89586 0.90907 NaN 1 0 Median NaN NaN NaN 0 0 Median 20305000 9737400 10567000 20305000 9737400 10567000 0 0 0 5164 1456 5290 13574 21207 21207 1 GLLVDRPSETK LCADYAEQDELDYHRGLLVDRPSETKTEEQ DYHRGLLVDRPSETKTEEQGIPRPLHPPPP R G L T K T 0 1 0 1 0 0 1 1 0 0 2 1 0 0 1 1 1 0 0 1 0 0 11 1 1213.6667 G3V3B0;Q69YJ6;S4R3H4;E7EQT4;Q9UKV3;B4DQZ7 G3V3B0 338 348 ACIN1;DKFZp667N107 Apoptotic chromatin condensation inducer in the nucleus yes no 2 2.0205E-07 114.4 1 1.0096 1.1447 NaN 1 Median 1.0096 1.1447 NaN 1 0 Median NaN NaN NaN 0 0 Median 23814000 11051000 12762000 23814000 11051000 12762000 0 0 0 5165 1220 5291 13575 21208;21209 21208 2 GLPFQANAQDIINFFAPLKPVR ADFGTTSSLHFVHMRGLPFQANAQDIINFF AQDIINFFAPLKPVRITMEYSSSGKATGEA R G L V R I 3 1 2 1 0 2 0 1 0 2 2 1 0 3 3 0 0 0 0 1 0 0 22 1 2455.3376 A0A024RD99;B7Z2D8;B7Z5F9;B3KP14;H0Y8R1;F5H5I6;B7Z3R7;H0YAK1;B3KW50;Q12849 A0A024RD99 245 266 GRSF1 G-rich sequence factor 1 yes no 3 5.3649E-24 114.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24736000 0 24736000 24736000 0 24736000 0 0 0 5166 381 5292 13576 21210 21210 1 GLPLGSAVSSPVLFSPVGR AGLGPGSTPRTASRKGLPLGSAVSSPVLFS GSAVSSPVLFSPVGRRSSLSSRGTPTRMFP K G L G R R 1 1 0 0 0 0 0 3 0 0 3 0 0 1 3 4 0 0 0 3 0 0 19 0 1839.0254 B4E206;Q8WUM0 B4E206 20 38 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.00037693 42.568 1 1.6797 1.4853 NaN 1 Median NaN NaN NaN 0 0 Median 1.6797 1.4853 NaN 1 0 Median 3933300 1688300 2245000 0 0 0 3933300 1688300 2245000 5167 1070 5293 13577 21211;21212 21211 2 GLPNLITHK VDTIFECKLCRSLFRGLPNLITHKKFYCPP CRSLFRGLPNLITHKKFYCPPSLQMDDNLP R G L H K K 0 0 1 0 0 0 0 1 1 1 2 1 0 0 1 0 1 0 0 0 0 0 9 0 991.58147 Q2TB10;A0A087WXB4;C9JHX9;C9K0M9;C9JLY3 Q2TB10 80 88 ZNF800 Zinc finger protein 800 yes no 2 0.0028738 79.809 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5168 1777 5294 13578;13579 21213;21214 21213 2 GLPQLGTLGAGNHYAEIQVVDEIFNEYAAK LQADPNKVSARAKKRGLPQLGTLGAGNHYA EIQVVDEIFNEYAAKKMGIDHKGQVCVMIH R G L A K K 4 0 2 1 0 2 3 4 1 2 3 1 0 1 1 0 1 0 2 2 0 0 30 0 3216.6091 Q9Y3I0 Q9Y3I0 215 244 RTCB tRNA-splicing ligase RtcB homolog yes yes 3 1.2633E-19 75.717 1 1.091 1.2296 NaN 1 Median 1.091 1.2296 NaN 1 0 Median NaN NaN NaN 0 0 Median 60550000 28478000 32073000 60550000 28478000 32073000 0 0 0 5169 2137 5295 13580 21215;21216 21215 2 GLPWSCSADEVQR MLGTEGGEGFVVKVRGLPWSCSADEVQRFF VRGLPWSCSADEVQRFFSDCKIQNGAQGIR R G L Q R F 1 1 0 1 1 1 1 1 0 0 1 0 0 0 1 2 0 1 0 1 0 0 13 0 1503.6776 E9PCY7;G8JLB6;P31943;D6RIU0;D6RBM0;E7EQJ0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E5RGV0;E7EN40;D6RDL0;D6R9D3;D6RF17 E9PCY7 17 29 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 0.00010871 91.855 2 2 1.7223 2.2591 34.065 4 Linear 2.0159 2.2279 4.0337 2 0 Median 1.4617 1.2367 0.80203 2 0 Median 110380000 36808000 73575000 95526000 30256000 65271000 14857000 6552000 8304600 5170 1231 5296 13581;13582;13583;13584 21217;21218;21219;21220;21221;21222 21220 6 GLQALEEGIK G L I K 1 0 0 0 0 1 2 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1056.5815 REV__D3VVB6 yes yes 2 0.00089646 79.474 4 1.1607 1.233 2.1834 4 Linear 1.1607 1.233 2.1834 4 0 Linear NaN NaN NaN 0 0 Median 134800000 63920000 70879000 134800000 63920000 70879000 0 0 0 + 5171 2174 5297 13585;13586;13587;13588 21223;21224;21225;21226;21227;21228 21226 4 GLQAQIASSGLTVEVDAPK EELLFMKKNHEEEVKGLQAQIASSGLTVEV QIASSGLTVEVDAPKSQDLAKIMADIRAQY K G L P K S 3 0 0 1 0 2 1 2 0 1 2 1 0 0 1 2 1 0 0 2 0 0 19 0 1883 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 223 241 KRT18 Keratin, type I cytoskeletal 18 yes no 2 2.8431E-24 137.8 2 2.0606 1.6511 9.558 2 Median NaN NaN NaN 0 0 Median 2.0606 1.6511 9.558 2 0 Median 28139000 9019800 19119000 0 0 0 28139000 9019800 19119000 5172 316 5298 13589;13590 21229;21230 21229 2 GLQCGAPLSLVDLAGSER HSVFQLQISGEHSSRGLQCGAPLSLVDLAG CGAPLSLVDLAGSERLDPGLALGPGERERL R G L E R L 2 1 0 1 1 1 1 3 0 0 4 0 0 0 1 2 0 0 0 1 0 0 18 0 1841.9305 A0A024RCS7;Q9BW19;B4DMA8;B4E063;A0A087X1W5 A0A024RCS7 554 571 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.0004311 45.207 1 2 1.1949 0.99131 6.5792 3 Median 0.90867 0.89891 NaN 1 0 Median 1.2034 1.0049 1.9291 2 0 Median 21903000 10986000 10917000 12430000 6641800 5787800 9473000 4344300 5128700 5173 371 5299 13591;13592;13593 21231;21232;21233;21234;21235 21232 5 GLQDVLR ARAQAALAVNISAARGLQDVLRTNLGPKGT AVNISAARGLQDVLRTNLGPKGTMKMLVSG R G L L R T 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 799.4552 Q59ET3;B2R9K8;A0A024RDL1;P40227;Q92526 Q59ET3 27 33 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 2 0.040227 69.432 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5174 389 5300 13594 21236 21236 1 GLQEVGLPLHR DLVNAHVVPGSGVVKGLQEVGLPLHRGCLL GVVKGLQEVGLPLHRGCLLIAEMSSTGSLA K G L H R G 0 1 0 0 0 1 1 2 1 0 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1217.6881 A8K5J1;P11172;B5LY71;B5LY69;B5LY70;B5LY64 A8K5J1 353 363 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase;Orotidine 5-phosphate decarboxylase yes no 3 0.037651 34.755 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4882200 0 4882200 4882200 0 4882200 0 0 0 5175 749 5301 13595 21237 21237 1 GLQNPFPQQMQNNSR IIRVGGALKAPSQNRGLQNPFPQQMQNNSR GLQNPFPQQMQNNSRITVFDENADEASTAE R G L S R I 0 1 3 0 0 4 0 1 0 0 1 0 1 1 2 1 0 0 0 0 0 0 15 0 1757.8268 O60566 O60566 257 271 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.00010724 65.842 1 0.75549 0.75716 NaN 1 Median 0.75549 0.75716 NaN 1 0 Median NaN NaN NaN 0 0 Median 6791300 3870200 2921100 6791300 3870200 2921100 0 0 0 5176 1396 5302 13596 21238 21238 1073 1 GLQQQNSDWYLK LALFRALQSPALGLRGLQQQNSDWYLKQLL GLRGLQQQNSDWYLKQLLSDKQQKRQSGQT R G L L K Q 0 0 1 1 0 3 0 1 0 0 2 1 0 0 0 1 0 1 1 0 0 0 12 0 1478.7154 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 337 348 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.017695 52.725 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5177 352 5303 13597 21239 21239 1 GLQSYYAVAHAVTER QDVDDEYGVSQALARGLQSYYAVAHAVTER GLQSYYAVAHAVTERVDKQSALMVNGVLKQ R G L E R V 3 1 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 2 2 0 0 15 0 1663.8318 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6 A7E2E1 727 741 SMARCA4 Transcription activator BRG1 yes no 2;3 4.9552E-05 72.496 2 0.79689 0.80667 1.5051 2 Median 0.79689 0.80667 1.5051 2 0 Median NaN NaN NaN 0 0 Median 37955000 20262000 17694000 37955000 20262000 17694000 0 0 0 5178 695 5304 13598;13599 21240;21241 21241 2 GLSAEEVTR ALMGLSVRELNRHLRGLSAEEVTRLKQRRR LNRHLRGLSAEEVTRLKQRRRTLKNRGYAA R G L T R L 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 960.48762 Q9ULX9;B0QY70;B0QY71 Q9ULX9 43 51 MAFF Transcription factor MafF yes no 2 0.0010227 91.853 2 2 1.1727 1.1422 12.968 3 Median 1.0504 1.1422 NaN 1 0 Median 1.3575 1.1452 18.338 2 0 Median 40018000 19798000 20220000 28654000 14707000 13946000 11365000 5090700 6273800 5179 2112 5305 13600;13601;13602;13603 21242;21243;21244;21245;21246;21247;21248;21249 21245 8 GLSASYLEPDRYDEEEEGEESISLAAIK RESQQRRMREKQHQRGLSASYLEPDRYDEE EEEEGEESISLAAIKNRYKGGIREERARIY R G L I K N 3 1 0 2 0 0 7 2 0 2 3 1 0 0 1 4 0 0 2 0 0 0 28 1 3099.4408 B4DNM0;Q8WVC0 B4DNM0 542 569 LEO1 RNA polymerase-associated protein LEO1 yes no 3 5.712E-19 76.161 2 2 1.5723 1.8707 18.956 4 Linear 1.5723 1.852 1.2781 2 0 Median 1.6013 1.3551 10.034 2 0 Median 110050000 38213000 71835000 92352000 32149000 60203000 17697000 6064700 11632000 5180 1012 5306 13604;13605;13606;13607 21250;21251;21252;21253;21254;21255;21256 21253 7 GLSEAAGQTAQMLER EKNQSLVEENEKLSRGLSEAAGQTAQMLER GLSEAAGQTAQMLERIIWTEQANEKMNAKL R G L E R I 3 1 0 0 0 2 2 2 0 0 2 0 1 0 0 1 1 0 0 0 0 0 15 0 1560.7566 Q59HG1;O95239;Q6PKB2 Q59HG1 408 422 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 2.2158E-39 173.76 4 5 1.1189 1.2443 15.369 9 Linear 1.1413 1.2136 7.9216 4 0 Median 1.1141 0.9243 5.496 5 0 Median 160960000 77393000 83567000 130740000 62937000 67806000 30217000 14456000 15761000 5181 1803 5307;5308 13608;13609;13610;13611;13612;13613;13614;13615;13616 21257;21258;21259;21260;21261;21262;21263;21264;21265;21266;21267;21268;21269;21270;21271 21264 1668 15 GLSEDTTEETLK SPNAGSQPSKTLFVKGLSEDTTEETLKESF FVKGLSEDTTEETLKESFDGSVRARIVTDR K G L L K E 0 0 0 1 0 0 3 1 0 0 2 1 0 0 0 1 3 0 0 0 0 0 12 0 1321.6249 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 501 512 NCL Nucleolin yes no 2 6.123E-38 183.67 2 2 1.15 1.3578 55.795 4 Linear 1.1453 1.351 4.7932 2 0 Median 0.62744 0.51498 3.6894 2 0 Median 865770000 404280000 461490000 802130000 366370000 435760000 63638000 37911000 25727000 5182 151 5309 13617;13618;13619;13620 21272;21273;21274;21275;21276;21277;21278;21279;21280 21274 9 GLSEDVSISK PHLAREFMIKTRRRKGLSEDVSISKFFDDP TRRRKGLSEDVSISKFFDDPMLLELAKQDV K G L S K F 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 3 0 0 0 1 0 0 10 0 1033.5292 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;K7EP67 B4DZB1 893 902 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 2.8565E-08 120.15 2 2 0.96953 0.91842 24.266 4 Median 1.0057 1.1179 8.1431 2 0 Median 0.93946 0.74815 9.343 2 0 Median 155950000 82707000 73241000 149290000 79410000 69883000 6654600 3296500 3358100 5183 794 5310 13621;13622;13623;13624 21281;21282;21283;21284;21285;21286;21287;21288 21285 8 GLSFLEVK SLTQKVQAGAYPTEKGLSFLEVKDQLLLMY GAYPTEKGLSFLEVKDQLLLMYLMDLTHLI K G L V K D 0 0 0 0 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 8 0 891.50657 Q8NEJ9;H0YJ17;G3V4G1 Q8NEJ9 49 56 NGDN Neuroguidin yes no 2 0.027047 54.157 2 2 0.8886 0.80846 8.4259 4 Median 0.80938 0.80846 2.6354 2 0 Median 1.0532 0.84641 13.601 2 0 Median 66051000 36198000 29854000 53511000 29749000 23761000 12541000 6448300 6092500 5184 1927 5311 13625;13626;13627;13628 21289;21290;21291;21292;21293;21294 21291 6 GLSGAQDPFPGPAPVPVEVVQK VPKKPREWKNPESQRGLSGAQDPFPGPAPV PFPGPAPVPVEVVQKFCRIDKSRKLPHSKA R G L Q K F 2 0 0 1 0 2 1 3 0 0 1 1 0 1 5 1 0 0 0 4 0 0 22 0 2188.1528 B0UZZ8;B4DNI0;A8K9A1;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1 B0UZZ8 90 111 C6orf11 yes no 2 1.5702E-15 101.42 2 2 1.0934 1.0665 6.0739 4 Median 0.90399 1.0065 6.5986 2 0 Median 1.2893 1.0908 1.5949 2 0 Median 239470000 115810000 123650000 116170000 62392000 53777000 123300000 53422000 69875000 5185 809 5312 13629;13630;13631;13632 21295;21296;21297;21298;21299;21300;21301;21302 21297 8 GLSHSPWAVK FGTGVNVYLMKRSPRGLSHSPWAVKKINPI KRSPRGLSHSPWAVKKINPICNDHYRSVYQ R G L V K K 1 0 0 0 0 0 0 1 1 0 1 1 0 0 1 2 0 1 0 1 0 0 10 0 1080.5716 V9HWH0;Q96KB5;E5RFX4 V9HWH0 55 64 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 3 0.014698 37.556 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4791400 4791400 0 4791400 4791400 0 0 0 0 5186 1975 5313 13633 21303 21303 1 GLSPAQADSQFLENAK KELEEKVAELHKTHRGLSPAQADSQFLENA LSPAQADSQFLENAKRLSMYGVDLHHAKDS R G L A K R 3 0 1 1 0 2 1 1 0 0 2 1 0 1 1 2 0 0 0 0 0 0 16 0 1674.8213 Q59FD8;E9PII3;E9PK52;E9PHY5;O43491;I6L9B1 Q59FD8 387 402 EPB41L2 Band 4.1-like protein 2 yes no 2 4.0186E-05 91.858 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5187 1238 5314 13634 21304 21304 1 GLSQNQQIPQNSVTPR KEISEASENIYSDVRGLSQNQQIPQNSVTP LSQNQQIPQNSVTPRRGRRKKEVNQDILEN R G L P R R 0 1 2 0 0 4 0 1 0 1 1 0 0 0 2 2 1 0 0 1 0 0 16 0 1765.9071 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1795 1810 AHCTF1 Protein ELYS yes no 2 1.0942E-17 132.79 2 2 1.4449 1.4156 9.5074 4 Median 1.1668 1.3267 1.173 2 0 Median 1.8027 1.5516 4.9696 2 0 Median 200100000 87798000 112300000 134530000 64444000 70081000 65576000 23353000 42223000 5188 1945 5315 13635;13636;13637;13638 21305;21306;21307;21308;21309;21310 21305 6 GLSQSALPYR ______________________________ HAPGKGLSQSALPYRRSVPTWLKLTSDDVK K G L Y R R 1 1 0 0 0 1 0 1 0 0 2 0 0 0 1 2 0 0 1 0 0 0 10 0 1090.5771 P62277;J3KMX5;E9PS50 P62277 10 19 RPS13 40S ribosomal protein S13 yes no 2 1.5728E-08 122.74 2 2 0.92221 0.89494 39.992 4 Median 1.1002 1.2663 1.6295 2 0 Median 0.77715 0.63363 1.3777 2 0 Median 362690000 163970000 198730000 335190000 148800000 186390000 27506000 15172000 12334000 5189 1640 5316 13639;13640;13641;13642 21311;21312;21313;21314;21315;21316;21317;21318 21312 8 GLSSEAVTSLLPK AQRANLFHKLVTELRGLSSEAVTSLLPKLI LRGLSSEAVTSLLPKLIEVSSPITLQALIQ R G L P K L 1 0 0 0 0 0 1 1 0 0 3 1 0 0 1 3 1 0 0 1 0 0 13 0 1300.7238 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 354 366 yes yes 2 0.0088328 56.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1396700 1396700 0 0 0 0 1396700 1396700 0 + 5190 1146 5317 13643 21319 21319 1 GLSSLLCNFTK AVREPKLPVLAGCLKGLSSLLCNFTKSMEE GCLKGLSSLLCNFTKSMEEDPQTSREIFNF K G L T K S 0 0 1 0 1 0 0 1 0 0 3 1 0 1 0 2 1 0 0 0 0 0 11 0 1238.6329 P78527;B4DL41 P78527 226 236 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.00013603 95.573 2 1 0.58 0.57105 44.66 3 Median 0.6034 0.6156 10.625 2 0 Median 0.36949 0.28717 NaN 1 0 Median 60334000 36709000 23625000 47749000 28092000 19657000 12585000 8617400 3967500 5191 1665 5318 13644;13645;13646 21320;21321;21322;21323;21324;21325 21320 6 GLTAVSNNAGVDNFGLGLLLR IPENLIDALLKTGVKGLTAVSNNAGVDNFG NNAGVDNFGLGLLLRSKQIKRMVSSYVGEN K G L L R S 2 1 3 1 0 0 0 4 0 0 5 0 0 1 0 1 1 0 0 2 0 0 21 0 2100.1328 Q6IAV5;A0A024R040;P55809 Q6IAV5 84 104 OXCT;OXCT1 Succinyl-CoA:3-ketoacid-coenzyme A transferase;Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 2 1.1869E-08 75.669 2 2.7805 2.8987 NaN 1 Median 2.7805 2.8987 NaN 1 0 Median NaN NaN NaN 0 0 Median 9823300 1803900 8019300 9823300 1803900 8019300 0 0 0 5192 35 5319 13647;13648 21326;21327 21327 2 GLTDLSACK EILRGVRLHFHNLVKGLTDLSACKAQLGLG FHNLVKGLTDLSACKAQLGLGHSYSRAKVK K G L C K A 1 0 0 1 1 0 0 1 0 0 2 1 0 0 0 1 1 0 0 0 0 0 9 0 963.46953 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 135 143 NOP56 Nucleolar protein 56 yes no 2 0.0030727 76.478 1 2 0.96703 0.76058 NaN 1 Median NaN NaN NaN 0 0 Median 0.96703 0.76058 NaN 1 0 Median 17288000 9425800 7862400 0 0 0 17288000 9425800 7862400 5193 785 5320 13649;13650;13651 21328;21329;21330;21331 21328 4 GLTETGLYR IPSIVVHCVNEIEQRGLTETGLYRISGCDR NEIEQRGLTETGLYRISGCDRTVKELKEKF R G L Y R I 0 1 0 0 0 0 1 2 0 0 2 0 0 0 0 0 2 0 1 0 0 0 9 0 1008.524 B2RE34;A0A024R136;Q9H0H5;Q9BZ74;H0YIK5 B2RE34 377 385 RACGAP1;FKSG42 Rac GTPase-activating protein 1 yes no 2 0.021548 49.418 1 2.1657 1.9543 NaN 1 Median NaN NaN NaN 0 0 Median 2.1657 1.9543 NaN 1 0 Median 2082600 767520 1315100 0 0 0 2082600 767520 1315100 5194 68 5321 13652 21332 21332 1 GLTPSQIGVILR TSDDVKEQIYKLAKKGLTPSQIGVILRDSH AKKGLTPSQIGVILRDSHGVAQVRFVTGNK K G L L R D 0 1 0 0 0 1 0 2 0 2 2 0 0 0 1 1 1 0 0 1 0 0 12 0 1252.7503 P62277;J3KMX5 P62277 44 55 RPS13 40S ribosomal protein S13 yes no 2 4.6852E-08 114.84 2 2 1.137 0.96668 35.129 4 Linear 1.1155 1.3109 0.97949 2 0 Median 0.82382 0.71348 0.85298 2 0 Median 957760000 447200000 510560000 876920000 403150000 473770000 80841000 44048000 36793000 5195 1640 5322 13653;13654;13655;13656 21333;21334;21335;21336;21337;21338;21339 21337 7 GLVASLISVK AYKDPEKNWNRNCVKGLVASLISVKDTSAT RNCVKGLVASLISVKDTSATTALELVAGER K G L V K D 1 0 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 2 0 0 10 0 985.61718 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 524 533 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.4776E-05 101.64 2 2 1.2269 1.2076 26.814 4 Median 0.85115 0.98027 0.38541 2 0 Median 1.8377 1.5527 6.4429 2 0 Median 510900000 259970000 250940000 396050000 217400000 178650000 114850000 42569000 72281000 5196 69 5323 13657;13658;13659;13660 21340;21341;21342;21343;21344;21345;21346;21347 21345 8 GLVAVITGGASGLGLATAER ______________________________ ITGGASGLGLATAERLVGQGASAVLLDLPN K G L E R L 4 1 0 0 0 0 1 5 0 1 3 0 0 0 0 1 2 0 0 2 0 0 20 0 1812.0105 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 10 29 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 1.9179E-78 189.1 2 1 1.7818 2.0428 42.443 3 Median 1.8892 2.1265 5.6757 2 0 Median 1.2547 1.0229 NaN 1 0 Median 154540000 57099000 97440000 139430000 50419000 89011000 15108000 6680100 8428400 5197 555 5324 13661;13662;13663 21348;21349;21350;21351;21352 21350 5 GLVEDTLR AQLRKASDSELERQKGLVEDTLRQRRQVEE SELERQKGLVEDTLRQRRQVEEEILALKAS K G L L R Q 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 901.4869 Q15149 Q15149 2048 2055 PLEC Plectin yes yes 2 0.019774 58.917 1 1.498 1.5052 NaN 1 Median 1.498 1.5052 NaN 1 0 Median NaN NaN NaN 0 0 Median 11149000 4464800 6684300 11149000 4464800 6684300 0 0 0 5198 1754 5325 13664 21353 21353 1 GLVGIGLFALAHAAFSAAQHR ______________________________ LFALAHAAFSAAQHRSYMRLTEKEDESLPI K G L H R S 6 1 0 0 0 1 0 3 2 1 3 0 0 2 0 1 0 0 0 1 0 0 21 0 2106.1487 Q8N4V1 Q8N4V1 8 28 MMGT1 Membrane magnesium transporter 1 yes yes 3 0.016834 19.868 1 0.29623 0.31888 NaN 1 Median 0.29623 0.31888 NaN 1 0 Median NaN NaN NaN 0 0 Median 3115300 2078100 1037300 3115300 2078100 1037300 0 0 0 5199 1909 5326 13665 21354 21354 1 GLVGNPLPSVR VNALLPTETFIPVIRGLVGNPLPSVRRKAL PVIRGLVGNPLPSVRRKALDLLNNKLQQNI R G L V R R 0 1 1 0 0 0 0 2 0 0 2 0 0 0 2 1 0 0 0 2 0 0 11 0 1107.64 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1606 1616 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00038966 82.287 2 2 0.9793 0.97308 4.8728 4 Median 0.84516 0.97308 0.74702 2 0 Median 1.1852 1.0014 7.9005 2 0 Median 375990000 198030000 177960000 328050000 176290000 151770000 47940000 21744000 26196000 5200 897 5327 13666;13667;13668;13669 21355;21356;21357;21358;21359;21360;21361 21357 7 GLVGPELHDR PVKGERLTVDEAVRKGLVGPELHDRLLSAE EAVRKGLVGPELHDRLLSAERAVTGYRDPY K G L D R L 0 1 0 1 0 0 1 2 1 0 2 0 0 0 1 0 0 0 0 1 0 0 10 0 1091.5724 Q15149;D3DWL0;Q96IE3 Q15149 3888 3897 PLEC;PLEC1 Plectin yes no 2;3 0.00091191 78.334 2 1.7976 1.8389 NaN 1 Median 1.7976 1.8389 NaN 1 0 Median NaN NaN NaN 0 0 Median 45079000 27477000 17602000 45079000 27477000 17602000 0 0 0 5201 1754 5328 13670;13671 21362;21363 21362 2 GLVLLRPPASLQYR TGLLDMVSSQPAAQRGLVLLRPPASLQYRF RGLVLLRPPASLQYRFARIAIEV_______ R G L Y R F 1 2 0 0 0 1 0 1 0 0 4 0 0 0 2 1 0 0 1 1 0 0 14 1 1581.9355 Q96F88;Q99575 Q96F88 1003 1016 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 0.00072215 51.211 2 2 0.39446 0.39016 20.196 4 Median 0.30806 0.3447 9.2648 2 0 Median 0.52803 0.46356 16.127 2 0 Median 120530000 87602000 32926000 106820000 78122000 28698000 13707000 9479600 4227600 5202 1965 5329 13672;13673;13674;13675 21364;21365;21366;21367;21368;21369 21364 6 GLVLVPTK LHRKATGPVVEQAVRGLVLVPTKELARQAQ VVEQAVRGLVLVPTKELARQAQSMIQQLAT R G L T K E 0 0 0 0 0 0 0 1 0 0 2 1 0 0 1 0 1 0 0 2 0 0 8 0 825.53239 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 85 92 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0088018 77.058 2 1.2763 1.3457 4.6418 2 Median 1.2763 1.3457 4.6418 2 0 Median NaN NaN NaN 0 0 Median 66167000 30402000 35765000 66167000 30402000 35765000 0 0 0 5203 2081 5330 13676;13677 21370;21371;21372;21373 21373 4 GLVQALQTK LSERAALQEELQLCKGLVQALQTKVTQQGL ELQLCKGLVQALQTKVTQQGLKMVVPGLDG K G L T K V 1 0 0 0 0 2 0 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 956.56548 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1143 1151 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.01317 60.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5204 587 5331 13678 21374 21374 1 GLVSSDELAK LSDFRDLMSWINGIRGLVSSDELAKDVTGA INGIRGLVSSDELAKDVTGAEALLERHQEH R G L A K D 1 0 0 1 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1017.5342 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1340 1349 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 4.4984E-05 99.139 1 1.2235 1.3573 NaN 1 Median 1.2235 1.3573 NaN 1 0 Median NaN NaN NaN 0 0 Median 48181000 24493000 23688000 48181000 24493000 23688000 0 0 0 5205 523 5332 13679 21375 21375 1 GLVVDMDGFEEERK YGFPVDLTGLIAEEKGLVVDMDGFEEERKL KGLVVDMDGFEEERKLAQLKSQGKGAGGED K G L R K L 0 1 0 2 0 0 3 2 0 0 1 1 1 1 0 0 0 0 0 2 0 0 14 1 1622.761 P49588 P49588 433 446 AARS Alanine--tRNA ligase, cytoplasmic yes yes 3 0.0015179 51.546 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5119500 0 5119500 5119500 0 5119500 0 0 0 5206 1583 5333 13680 21376 21376 1366 1 GLYCYELDEK DAFTDLKNGSLFAFRGLYCYELDEKAVRPG LFAFRGLYCYELDEKAVRPGYPKLIRDVWG R G L E K A 0 0 0 1 1 0 2 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 10 0 1288.5646 CON__Q3ZBS7 CON__Q3ZBS7 173 182 yes yes 2 0.00032116 92.062 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36552000 36552000 0 36552000 36552000 0 0 0 0 + 5207 1173 5334 13681;13682 21377;21378 21377 2 GLYEDCSSCFQAMGK LSNDGMLVILAAGDRGLYEDCSSCFQAMGK GLYEDCSSCFQAMGKTSFFLGEVGNAAKMM R G L G K T 1 0 0 1 2 1 1 2 0 0 1 1 1 1 0 2 0 0 1 0 0 0 15 0 1751.6953 D3DUE6;K7EMM8;D3DUE7;Q49A26 D3DUE7 424 438 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2 2.6377E-07 99.283 3 1 1.384 1.388 28.027 3 Median 1.4395 1.4869 9.7334 2 0 Median 1.1772 0.92876 NaN 1 0 Median 52922000 19958000 32964000 47495000 17467000 30028000 5426800 2490600 2936200 5208 1194;1193 5335 13683;13684;13685;13686 21379;21380;21381;21382;21383;21384;21385 21382 909 7 GLYPAPLK QVYKKVEEKVRKQTKGLYPAPLKIIDVVKT KVRKQTKGLYPAPLKIIDVVKTGIEQGSDA K G L L K I 1 0 0 0 0 0 0 1 0 0 2 1 0 0 2 0 0 0 1 0 0 0 8 0 857.50109 E9KL44;P40939;B4DRH6;B4DDZ5 E9KL44 296 303 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.024367 62.714 2 1.3312 1.377 NaN 1 Median 1.3312 1.377 NaN 1 0 Median NaN NaN NaN 0 0 Median 32300000 8223800 24076000 32300000 8223800 24076000 0 0 0 5209 1228 5336 13687;13688 21386;21387 21387 2 GLYSDTELQQCLAAAQAASQHVFR ALDSVERKLLMSSTKGLYSDTELQQCLAAA QCLAAAQAASQHVFRFYRESLQRRYSKS__ K G L F R F 5 1 0 1 1 4 1 1 1 0 3 0 0 1 0 2 1 0 1 1 0 0 24 0 2663.2762 Q9NQT4;M0R050 Q9NQT4 199 222 EXOSC5 Exosome complex component RRP46 yes no 3 0.0015962 34.474 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5136200 0 5136200 0 0 0 5136200 0 5136200 5210 2060 5337 13689 21388 21388 1 GMAAAGNYAWVNR ACARIASPEGQDYLKGMAAAGNYAWVNRSS LKGMAAAGNYAWVNRSSMTFLTRQAFAKVF K G M N R S 4 1 2 0 0 0 0 2 0 0 0 0 1 0 0 0 0 1 1 1 0 0 13 0 1379.6405 Q9Y3I0;B4DNA0 Q9Y3I0 309 321 RTCB tRNA-splicing ligase RtcB homolog yes no 2 0.00012536 96.331 2 1.4575 1.5432 1.6371 2 Median 1.4575 1.5432 1.6371 2 0 Median NaN NaN NaN 0 0 Median 35924000 15382000 20542000 35924000 15382000 20542000 0 0 0 5211 2137 5338 13690;13691 21389;21390 21390 1974 1 GMAFLHTLEPLIPR VDQSQAVKFALDMARGMAFLHTLEPLIPRH RGMAFLHTLEPLIPRHALNSRSVMIDEDMT R G M P R H 1 1 0 0 0 0 1 1 1 1 3 0 1 1 2 0 1 0 0 0 0 0 14 0 1593.8701 V9HWF0;A0A0A0MTH3;Q13418 V9HWF0 304 317 HEL-S-28;ILK Integrin-linked protein kinase yes no 3 0.0057803 57.136 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3784200 0 3784200 3784200 0 3784200 0 0 0 5212 487 5339 13692 21391 21391 336 1 GMATCFAYGQTGSGK YRFTARPLVETIFERGMATCFAYGQTGSGK GMATCFAYGQTGSGKTHTMGGDFSGKNQDC R G M G K T 2 0 0 0 1 1 0 4 0 0 0 1 1 1 0 1 2 0 1 0 0 0 15 0 1534.6544 B0AZS5;O00139;B4DM85 B0AZS5 259 273 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2 0.011991 42.809 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5213 804 5340 13693 21392 21392 646 1 GMFNSALEVAK TGFPYKIFKNTSFIKGMFNSALEVAKFEGA SFIKGMFNSALEVAKFEGAVIRTVSGIRGQ K G M A K F 2 0 1 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 1 0 0 11 0 1165.5801 Q14692 Q14692 1045 1055 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 2.2482E-05 96.331 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15390000 15390000 0 15390000 15390000 0 0 0 0 5214 1742 5341 13694 21393 21393 1587 1 GMGEAVQEFVDK QTAEKNVQLSLLTERGMGEAVQEFVDKEEK TERGMGEAVQEFVDKEEKDAIEELVKYQLE R G M D K E 1 0 0 1 0 1 2 2 0 0 0 1 1 1 0 0 0 0 0 2 0 0 12 0 1308.602 Q05D78;F8W7U8;A0A024R395;P49959 Q05D78 453 464 MRE11A Double-strand break repair protein MRE11A yes no 2 0.0068665 54.259 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5215 131 5342 13695 21394 21394 112 1 GMLDPLEVHLLDFPNIVIK LPVEEQPKQIIVTRKGMLDPLEVHLLDFPN PLEVHLLDFPNIVIKGSELQLPFQACLKVE K G M I K G 0 0 1 2 0 0 1 1 1 2 4 1 1 1 2 0 0 0 0 2 0 0 19 0 2162.1809 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1867 1885 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 3.7673E-17 113.88 2 1.0462 1.1845 NaN 1 Median 1.0462 1.1845 NaN 1 0 Median NaN NaN NaN 0 0 Median 89341000 52712000 36629000 89341000 52712000 36629000 0 0 0 5216 1854 5343 13696;13697 21395;21396;21397 21395 1711 3 GMPPGGGGEVVFSCPVR FGIDGESFELKIVRRGMPPGGGGEVVFSCP PPGGGGEVVFSCPVRKVLKPIQLTDPGKIK R G M V R K 0 1 0 0 1 0 1 5 0 0 0 0 1 1 3 1 0 0 0 3 0 0 17 0 1701.7967 Q9Y2P8 Q9Y2P8 158 174 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 0.00035611 46.069 2 0.92837 0.92378 NaN 1 Median 0.92837 0.92378 NaN 1 0 Median NaN NaN NaN 0 0 Median 11784000 6451900 5332100 11784000 6451900 5332100 0 0 0 5217 2125 5344 13698;13699 21398;21399 21399 1951 2 GMSVSDLADK RELDSITPEVLPGWKGMSVSDLADKLSTDD LPGWKGMSVSDLADKLSTDDLNSLIAHAHR K G M D K L 1 0 0 2 0 0 0 1 0 0 1 1 1 0 0 2 0 0 0 1 0 0 10 0 1021.475 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 386 395 IMMT MICOS complex subunit MIC60 no no 2 0.012851 49.06 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27949000 0 27949000 27949000 0 27949000 0 0 0 5218 1774;1029;1128 5345 13700;13701 21400;21401 21401 810 2 GMTLVTPLQLLLFASK FVFGEKIRTRAISAKGMTLVTPLQLLLFAS MTLVTPLQLLLFASKKVQSDGQIVLVDDWI K G M S K K 1 0 0 0 0 1 0 1 0 0 5 1 1 1 1 1 2 0 0 1 0 0 16 0 1731.0005 Q08211;B3KU66 Q08211 1058 1073 DHX9 ATP-dependent RNA helicase A yes no 2 1.0488E-08 100.38 1 0.91143 0.91384 NaN 1 Median 0.91143 0.91384 NaN 1 0 Median NaN NaN NaN 0 0 Median 26805000 8725300 18080000 26805000 8725300 18080000 0 0 0 5219 1691 5346 13702 21402 21402 1511 1 GMTSESDSIGLTPGEK KLSDGIGVMLPQVLKGMTSESDSIGLTPGE MTSESDSIGLTPGEKSELALSALGGCVFYL K G M E K S 0 0 0 1 0 0 2 3 0 1 1 1 1 0 1 3 2 0 0 0 0 0 16 0 1607.7349 P52701;A0A087WWJ1;Q1L838 P52701 661 676 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 9.6773E-07 83.314 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12055000 0 12055000 12055000 0 12055000 0 0 0 5220 1601 5347 13703;13704 21403;21404 21404 1385 2 GMVFGAPVPK FGGLQNKAPPMDKLRGMVFGAPVPKQCLIL MDKLRGMVFGAPVPKQCLILGEQIDLLQQY R G M P K Q 1 0 0 0 0 0 0 2 0 0 0 1 1 1 2 0 0 0 0 2 0 0 10 0 1001.5368 A6NHR9;J3KTL8 A6NHR9 1888 1897 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0095233 53.166 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4117300 0 4117300 4117300 0 4117300 0 0 0 5221 684 5348 13705;13706 21405;21406 21406 532 2 GMVFSINLGFSDLTNK GSLVINSKNQYKLKKGMVFSINLGFSDLTN MVFSINLGFSDLTNKEGKKPEEKTYALFIG K G M N K E 0 0 2 1 0 0 0 2 0 1 2 1 1 2 0 2 1 0 0 1 0 0 16 0 1741.8709 Q9Y5B9;Q0VGA3 Q9Y5B9 374 389 SUPT16H FACT complex subunit SPT16 yes no 2 2.13E-12 116.51 2 2 0.83929 0.79715 46.559 4 Median 1.0429 1.1632 8.6651 2 0 Median 0.66279 0.52779 13.531 2 0 Median 149970000 78432000 71542000 128560000 65509000 63055000 21411000 12923000 8487800 5222 2148 5349 13707;13708;13709;13710 21407;21408;21409;21410;21411;21412;21413 21409 1991 7 GNAAWQEQLK NSLSLADLCVWATLKGNAAWQEQLKQKKAP WATLKGNAAWQEQLKQKKAPVHVKRWFGFL K G N L K Q 2 0 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1143.5673 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5;V9GZ76 P07814 130 139 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 5.2324E-06 108.81 2 1.9685 1.9281 NaN 1 Median 1.9685 1.9281 NaN 1 0 Median NaN NaN NaN 0 0 Median 21899000 8458300 13441000 21899000 8458300 13441000 0 0 0 5223 1454 5350 13711;13712 21414;21415 21414 2 GNAGQSNYGFANSAMER ELDYFVVFSSVSCGRGNAGQSNYGFANSAM AGQSNYGFANSAMERICEKRRHEGLPGLAV R G N E R I 3 1 3 0 0 1 1 3 0 0 0 0 1 1 0 2 0 0 1 0 0 0 17 0 1772.7536 A0A0U1RQF0;P49327 A0A0U1RQF0 2025 2041 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.5825E-07 88.552 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8110100 0 8110100 8110100 0 8110100 0 0 0 5224 587 5351 13713;13714 21416;21417;21418;21419 21417 438 4 GNAIYNLLPDIISR IAALAKNFFNELSHKGNAIYNLLPDIISRL KGNAIYNLLPDIISRLSDPELGVEEEPFHT K G N S R L 1 1 2 1 0 0 0 1 0 3 2 0 0 0 1 1 0 0 1 0 0 0 14 0 1557.8515 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1160 1173 NCAPD2 Condensin complex subunit 1 yes no 2 1.2566E-29 155.48 2 0.86188 1.004 0.032994 2 Median 0.86188 1.004 0.032994 2 0 Median NaN NaN NaN 0 0 Median 494250000 265420000 228840000 494250000 265420000 228840000 0 0 0 5225 908 5352 13715;13716 21420;21421;21422;21423 21423 4 GNDTFVTLDEILR ATDIHLGFMEKDAVRGNDTFVTLDEILRLA VRGNDTFVTLDEILRLAQENEVDFILLGGD R G N L R L 0 1 1 2 0 0 1 1 0 1 2 0 0 1 0 0 2 0 0 1 0 0 13 0 1491.7569 Q05D78;F8W7U8;A0A024R395;P49959;Q9BS79;F5GXT0;F5H742;A0A0S2Z438;F5H256 Q05D78 33 45 MRE11A Double-strand break repair protein MRE11A yes no 2 2.3956E-05 98.898 2 1 0.69966 0.7192 33.173 3 Median 0.70894 0.73072 2.2473 2 0 Median 0.48202 0.41162 NaN 1 0 Median 52666000 29500000 23165000 46940000 25716000 21225000 5725600 3784900 1940700 5226 131 5353 13717;13718;13719 21424;21425;21426;21427;21428;21429 21425 6 GNEEAQIFRPLK VDQPIVKTATITEPRGNEEAQIFRPLKFNT EPRGNEEAQIFRPLKFNTTSVIKIAVEPVN R G N L K F 1 1 1 0 0 1 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 12 1 1400.7412 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 521 532 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0010126 89.9 2 1.0132 1.2009 2.6794 2 Median 1.0132 1.2009 2.6794 2 0 Median NaN NaN NaN 0 0 Median 114870000 58854000 56012000 114870000 58854000 56012000 0 0 0 5227 794 5354 13720;13721 21430;21431;21432 21431 3 GNEFFCEVDEDYIQDK SSEEVSWISWFCGLRGNEFFCEVDEDYIQD NEFFCEVDEDYIQDKFNLTGLNEQVPHYRQ R G N D K F 0 0 1 3 1 1 3 1 0 1 0 1 0 2 0 0 0 0 1 1 0 0 16 0 2006.8204 N0E4C7;Q5SRQ6;P67870;N0E466;Q5SRQ3;N0E472;A0A0G2JM12;N0E650;N0E638;N0E6J1;B4DUJ4;N0E644;A0A0G2JM58 N0E4C7 18 33 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-1072;CSNK2B-LY6G5B-560;CSNK2B-LY6G5B-562 Casein kinase II subunit beta yes no 2 1.7701E-08 102.62 2 1 1.0249 1.0368 56.124 3 Plateau 1.0119 1.0397 0.38435 2 0 Median 0.49583 0.3933 NaN 1 0 Median 29404000 15599000 13805000 24851000 12634000 12217000 4553500 2965400 1588000 5228 1358 5355 13722;13723;13724 21433;21434;21435;21436;21437;21438;21439 21437 7 GNENANGAPAITLLIR SKKKVEFLKQIANTKGNENANGAPAITLLI NENANGAPAITLLIREKNESNKSSFDKMIE K G N I R E 3 1 3 0 0 0 1 2 0 2 2 0 0 0 1 0 1 0 0 0 0 0 16 0 1622.874 Q9Y5B9;Q0VGA3 Q9Y5B9 93 108 SUPT16H FACT complex subunit SPT16 yes no 2 2.2354E-12 120.84 2 2 0.75049 0.74694 6.4988 4 Median 0.66061 0.74694 2.4964 2 0 Median 0.89748 0.77375 10.394 2 0 Median 276400000 158800000 117600000 200820000 119670000 81155000 75574000 39130000 36444000 5229 2148 5356 13725;13726;13727;13728 21440;21441;21442;21443;21444;21445;21446;21447;21448 21441 9 GNFGGSFAGSFGGAGGHAPGVAR GGGGASFDRAIEMERGNFGGSFAGSFGGAG GSFGGAGGHAPGVARKACQIFVRNLPFDFT R G N A R K 4 1 1 0 0 0 0 9 1 0 0 0 0 3 1 2 0 0 0 1 0 0 23 0 2033.9456 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96 P52272 628 650 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3 9.5261E-18 111.66 6 2 1.3624 1.5213 30.87 6 Median 1.3715 1.5542 2.3447 4 0 Median 0.99232 0.85411 2.3513 2 0 Median 554910000 249100000 305810000 494090000 218710000 275370000 60827000 30385000 30442000 5230 1599 5357 13729;13730;13731;13732;13733;13734;13735;13736 21449;21450;21451;21452;21453;21454;21455;21456;21457;21458;21459;21460;21461;21462;21463;21464;21465;21466 21457 18 GNFLEIK RYAILNEPFKGEMNRGNFLEIKNKFLARRF PFKGEMNRGNFLEIKNKFLARRFKLLEQAL R G N I K N 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 819.44905 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1765 1771 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 1 0.053123 72.789 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5929100 5929100 0 5929100 5929100 0 0 0 0 5231 515 5358 13737 21467 21467 1 GNFYEASDWFK YVDCYLRLGAMARDKGNFYEASDWFKEALQ ARDKGNFYEASDWFKEALQINQDHPDAWSL K G N F K E 1 0 1 1 0 0 1 1 0 0 0 1 0 2 0 1 0 1 1 0 0 0 11 0 1362.5881 A8K6X9;Q6PD62 A8K6X9 545 555 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.0014119 67.704 2 1.4748 1.4904 3.7209 2 Median 1.4748 1.4904 3.7209 2 0 Median NaN NaN NaN 0 0 Median 20516000 9202400 11314000 20516000 9202400 11314000 0 0 0 5232 765 5359 13738;13739 21468;21469;21470 21470 3 GNGQPVQLQVVWQR LLYIYDKMRLEMWERGNGQPVQLQVVWQRS RGNGQPVQLQVVWQRSRDICLKKFIKPIFT R G N Q R S 0 1 1 0 0 4 0 2 0 0 1 0 0 0 1 0 0 1 0 3 0 0 14 0 1607.8532 Q01780;B4DKG8;B4DFE4 Q01780 459 472 EXOSC10 Exosome component 10 yes no 2 0.034054 39.918 1 0.92931 0.8098 NaN 1 Median NaN NaN NaN 0 0 Median 0.92931 0.8098 NaN 1 0 Median 1491900 687550 804370 0 0 0 1491900 687550 804370 5233 1676 5360 13740 21471;21472 21471 2 GNIAQMYHAPGK SVSFSPDGRKFVVTKGNIAQMYHAPGKKRE VTKGNIAQMYHAPGKKREFNAFVLDKTYFG K G N G K K 2 0 1 0 0 1 0 2 1 1 0 1 1 0 1 0 0 0 1 0 0 0 12 0 1285.6237 Q15269;A0A0B4J2E5 Q15269 116 127 PWP2 Periodic tryptophan protein 2 homolog yes no 2 7.0614E-05 93.111 2 2 1.1727 1.2121 26.412 4 Median 1.1727 1.2121 5.8739 2 0 Median 1.1395 0.99672 40.935 2 0 Median 42315000 19432000 22883000 39882000 18232000 21650000 2433700 1200000 1233700 5234 1756 5361;5362 13741;13742;13743;13744 21473;21474;21475;21476;21477 21474 1624 5 GNIIISTPEK LLTGETSTDLKLLGKGNIIISTPEKWDILS KLLGKGNIIISTPEKWDILSRRWKQRKNVQ K G N E K W 0 0 1 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 0 0 0 10 0 1070.5972 O75643;A4FU77 O75643 1422 1431 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0015966 72.928 2 2 1.093 1.03 24.251 4 Median 1.1002 1.2213 3.4294 2 0 Median 1.025 0.81773 11.975 2 0 Median 127820000 59210000 68615000 121070000 56096000 64978000 6751000 3113700 3637300 5235 1411 5363 13745;13746;13747;13748 21478;21479;21480;21481;21482;21483 21480 6 GNILIPGLSQK LDPASGDLVIREDCRGNILIPGLSQKPISS EDCRGNILIPGLSQKPISSFADFERHFLPA R G N Q K P 0 0 1 0 0 1 0 2 0 2 2 1 0 0 1 1 0 0 0 0 0 0 11 0 1138.671 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 203 213 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.00099342 70.908 2 2 1.0553 0.97908 11.365 4 Median 0.81899 0.88116 4.2987 2 0 Median 1.3274 1.0671 1.5684 2 0 Median 82708000 43748000 38960000 71000000 38644000 32356000 11709000 5104300 6604200 5236 1745 5364 13749;13750;13751;13752 21484;21485;21486;21487;21488;21489 21484 6 GNIVFVTLR RYVASAVFGVIGSQKGNIVFVTLRGEKGRY VIGSQKGNIVFVTLRGEKGRYVAVPACEHV K G N L R G 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 2 0 0 9 0 1017.5971 Q5TDG3;Q9UNX4 Q5TDG3 24 32 WDR3 WD repeat-containing protein 3 yes no 2 0.0040155 70.332 2 2 1.0355 1.012 2.4763 4 Median 0.90872 1.0303 3.4389 2 0 Median 1.1958 1.0084 1.3992 2 0 Median 183980000 94009000 89971000 140190000 74419000 65772000 43788000 19590000 24198000 5237 1827 5365 13753;13754;13755;13756 21490;21491;21492;21493;21494;21495 21490 6 GNLGAGNGNLQGPR PPPSFHLGGPAVGPRGNLGAGNGNLQGPRH RGNLGAGNGNLQGPRHMQKGRVETSRVVHI R G N P R H 1 1 3 0 0 1 0 5 0 0 2 0 0 0 1 0 0 0 0 0 0 0 14 0 1323.6644 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991;H0Y8T4;Q5CZA7;B4DF66;B3KM87;B4DRS1;D6RBI2;D6RE02;D6RIA2;D6RAM9;D6RAY2 D6REM6 374 387 MATR3;DKFZp686K0542 Matrin-3 yes no 2 1.5682E-37 166.07 2 1 1.2758 1.3449 57.982 3 Plateau 1.2867 1.3309 1.4794 2 0 Median 0.5626 0.48759 NaN 1 0 Median 43551000 19759000 23791000 41521000 18417000 23105000 2029300 1342800 686570 5238 542 5366 13757;13758;13759 21496;21497;21498;21499;21500 21499 5 GNLNFTCDGNSVISPVGNR FAYRFSNLLGTVYRRGNLNFTCDGNSVISP FTCDGNSVISPVGNRVTVFDLKNNKSDTLP R G N N R V 0 1 4 1 1 0 0 3 0 1 1 0 0 1 1 2 1 0 0 2 0 0 19 0 2019.9432 Q15269;C9J544 Q15269 18 36 PWP2 Periodic tryptophan protein 2 homolog yes no 2 3.4949E-12 107.65 2 1 0.94541 0.97491 29.494 3 Median 0.87794 0.9326 6.2754 2 0 Median 1.8249 1.5453 NaN 1 0 Median 72007000 32195000 39812000 53580000 25838000 27743000 18426000 6357000 12069000 5239 1756 5367 13760;13761;13762 21501;21502;21503;21504;21505;21506;21507 21504 7 GNLTPLTGR ASKAQRRKEKRQRVKGNLTPLTGRNYRQLL KRQRVKGNLTPLTGRNYRQLLERLQARQSR K G N G R N 0 1 1 0 0 0 0 2 0 0 2 0 0 0 1 0 2 0 0 0 0 0 9 0 927.51378 B3KNS8;O75683 B3KNS8 226 234 SURF6 Surfeit locus protein 6 yes no 2 0.0019257 79.059 2 0.62071 0.68376 18.576 2 Median 0.62071 0.68376 18.576 2 0 Median NaN NaN NaN 0 0 Median 108040000 66682000 41358000 108040000 66682000 41358000 0 0 0 5240 918 5368 13763;13764 21508;21509 21508 2 GNLYSFGCPEYGQLGHNSDGK KMACGAEFSMIMDCKGNLYSFGCPEYGQLG GCPEYGQLGHNSDGKFIARAQRIEYDCELV K G N G K F 0 0 2 1 1 1 1 5 1 0 2 1 0 1 1 2 0 0 2 0 0 0 21 0 2298.9964 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 208 228 RCC2 Protein RCC2 yes no 3 0.038451 13.455 1 0.72896 0.58342 NaN 1 Median NaN NaN NaN 0 0 Median 0.72896 0.58342 NaN 1 0 Median 2890800 1769100 1121700 0 0 0 2890800 1769100 1121700 5241 301 5369 13765 21510 21510 1 GNNVYCLDR IIRTLDLPIYVTRVKGNNVYCLDRECRPRV YVTRVKGNNVYCLDRECRPRVLTIDPTEFK K G N D R E 0 1 2 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1109.4924 P53621 P53621 575 583 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.021499 57.708 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10386000 0 10386000 10386000 0 10386000 0 0 0 5242 1607 5370 13766 21511 21511 1 GNSCILADEMGLGK YQLNGLNWLAHSWCKGNSCILADEMGLGKT KGNSCILADEMGLGKTIQTISFLNYLFHEH K G N G K T 1 0 1 1 1 0 1 3 0 1 2 1 1 0 0 1 0 0 0 0 0 0 14 0 1463.6748 O14646 O14646 499 512 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.0014232 47.991 1 1.0277 1.0284 NaN 1 Median 1.0277 1.0284 NaN 1 0 Median NaN NaN NaN 0 0 Median 15510000 9280300 6229500 15510000 9280300 6229500 0 0 0 5243 1366 5371 13767 21512 21512 1031 1 GNSIIMLEALER ATSGQQNNIGMVVIRGNSIIMLEALERV__ VIRGNSIIMLEALERV______________ R G N E R V 1 1 1 0 0 0 2 1 0 2 2 0 1 0 0 1 0 0 0 0 0 0 12 0 1344.7071 Q49AN9;F5H013;P62308;A8MWD9 Q49AN9 52 63 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 0.00015773 72.652 3 1.7273 1.6962 14.409 3 Median 1.7273 1.6962 14.409 3 0 Median NaN NaN NaN 0 0 Median 56413000 18676000 37737000 56413000 18676000 37737000 0 0 0 5244 798 5372 13768;13769;13770 21513;21514;21515 21513 643 3 GNSLQEILER VEVKKSQHKYVIGPKGNSLQEILERTGVSV VIGPKGNSLQEILERTGVSVEIPPSDSISE K G N E R T 0 1 1 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1157.6041 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H7C0A4;Q5HYC5 A0A024R4E5 315 324 HDLBP;DKFZp686L08115 Vigilin yes no 2 1.4212E-05 102.07 2 1.6992 1.7973 17.915 2 Median 1.6992 1.7973 17.915 2 0 Median NaN NaN NaN 0 0 Median 51542000 19423000 32120000 51542000 19423000 32120000 0 0 0 5245 154 5373 13771;13772 21516;21517 21517 2 GNSLTLIDLPGHESLR SITDSCAVYRVNNNRGNSLTLIDLPGHESL NSLTLIDLPGHESLRLQFLERFKSSARAIV R G N L R L 0 1 1 1 0 0 1 2 1 1 4 0 0 0 1 2 1 0 0 0 0 0 16 0 1720.9108 Q549N5;Q9Y5M8 Q549N5 110 125 SRPRB Signal recognition particle receptor subunit beta yes no 3 0.012589 36.451 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11596000 0 11596000 11596000 0 11596000 0 0 0 5246 1794 5374 13773 21518 21518 1 GNTAAYLLYAFTR LNDYIFSFDKMLDDRGNTAAYLLYAFTRIR DRGNTAAYLLYAFTRIRSIARLANIDEEML R G N T R I 3 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 2 0 2 0 0 0 13 0 1459.746 P54136;B4DXW6 P54136 528 540 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 2.1776E-14 128.08 3 2 1.6368 1.6138 NaN 1 Median 1.6368 1.6138 NaN 1 0 Median NaN NaN NaN 0 0 Median 25275000 6392100 18882000 21688000 6392100 15296000 3586400 0 3586400 5247 1609 5375 13774;13775;13776;13777;13778 21519;21520;21521;21522;21523;21524;21525 21520 7 GNTFVHDPK CLKYICTGDFPPGTKGNTFVHDPKVAQETD FPPGTKGNTFVHDPKVAQETDVRAQIRLQF K G N P K V 0 0 1 1 0 0 0 1 1 0 0 1 0 1 1 0 1 0 0 1 0 0 9 0 1013.493 Q92878;E7EN38;Q32P42;E7ESD9;A8K3I2;E9PM98;A5D6Y3 Q92878 63 71 RAD50 DNA repair protein RAD50 yes no 2 9.9969E-05 100.02 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5847900 0 5847900 5847900 0 5847900 0 0 0 5248 1953 5376 13779 21526 21526 1 GNTHTEILK VSIASAFAMLSLGAKGNTHTEILKGLGFNL LSLGAKGNTHTEILKGLGFNLTELAEAEIH K G N L K G 0 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 2 0 0 0 0 0 9 0 1011.5349 CON__P34955 CON__P34955 92 100 yes yes 2 5.3473E-11 131.5 2 2 0.83112 0.91179 NaN 1 Median 0.83112 0.91179 NaN 1 0 Median NaN NaN NaN 0 0 Median 61413000 43341000 18072000 57830000 39758000 18072000 3582900 3582900 0 + 5249 1164 5377 13780;13781;13782;13783 21527;21528;21529;21530 21529 4 GNVATEISIER VYGNCSTDFTVKTKKGNVATEISIERNLEK KTKKGNVATEISIERNLEKCDHFQPISTGV K G N E R N 1 1 1 0 0 0 2 1 0 2 0 0 0 0 0 1 1 0 0 1 0 0 11 0 1187.6146 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 194 204 yes yes 2 4.0226E-05 100.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8029500 8029500 0 8029500 8029500 0 0 0 0 + 5250 1146 5378 13784 21531 21531 1 GNVGFVFTK LENNPALEKLLPHIRGNVGFVFTKEDLTEI LLPHIRGNVGFVFTKEDLTEIRDMLLANKV R G N T K E 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 2 0 0 9 0 967.51272 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;F8VW21;G3V210;F8VZS0;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 84 92 RPLP0 60S acidic ribosomal protein P0 yes no 2 0.0019956 78.149 2 2 1.0552 1.2718 24.755 4 Linear 1.05 1.2542 3.4236 2 0 Median 0.95954 0.81894 3.0999 2 0 Median 3046700000 1508500000 1538200000 2896700000 1430300000 1466400000 149950000 78217000 71732000 5251 345 5379 13785;13786;13787;13788 21532;21533;21534;21535;21536;21537;21538 21535 7 GNVVPSPLPTR LDTPRSRERSPSPLRGNVVPSPLPTRRTRT SPLRGNVVPSPLPTRRTRTFSATVRASQGP R G N T R R 0 1 1 0 0 0 0 1 0 0 1 0 0 0 3 1 1 0 0 2 0 0 11 0 1135.635 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 36 46 CARHSP1 Calcium-regulated heat stable protein 1 yes no 2 0.01831 44.863 2 1.5899 1.6589 18.901 2 Median 1.5899 1.6589 18.901 2 0 Median NaN NaN NaN 0 0 Median 55549000 22267000 33282000 55549000 22267000 33282000 0 0 0 5252 2127 5380 13789;13790 21539;21540 21539 2 GNYHYLVK WMTVHRIINHSVDKKGNYHYLVKWRDLPYD NHSVDKKGNYHYLVKWRDLPYDQSTWEEDE K G N V K W 0 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 992.50797 Q12873;H7C2H0 Q12873 645 652 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.020224 65.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4416300 0 4416300 4416300 0 4416300 0 0 0 5253 1701 5381 13791 21541 21541 1 GPAAPPPTPVKPPR LQKVQSLRRALSGRKGPAAPPPTPVKPPRL KGPAAPPPTPVKPPRLGPGRSAEAQPEAQP K G P P R L 2 1 0 0 0 0 0 1 0 0 0 1 0 0 7 0 1 0 0 1 0 0 14 1 1380.7878 E9PIE3;Q969G5 E9PIE3 230 243 PRKCDBP Protein kinase C delta-binding protein yes no 3 0.003075 35.809 1 0.94998 1.0491 NaN 1 Median 0.94998 1.0491 NaN 1 0 Median NaN NaN NaN 0 0 Median 8273700 4727500 3546200 8273700 4727500 3546200 0 0 0 5254 1239 5382 13792 21542 21542 1 GPAFVNPLIPESPEEEELFR LDATFVMVARDSENKGPAFVNPLIPESPEE NPLIPESPEEEELFRQGELNKGRRIAFSST K G P F R Q 1 1 1 0 0 0 5 1 0 1 2 0 0 2 4 1 0 0 0 1 0 0 20 0 2269.1267 Q9Y305;H7C5Q2 Q9Y305 212 231 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 2.9692E-18 113.77 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25646000 0 25646000 25646000 0 25646000 0 0 0 5255 2130 5383 13793;13794 21543;21544 21543 2 GPAPAGEQLR ______________________________ ______________________________ M G P L R G 2 1 0 0 0 1 1 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 10 0 994.51959 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 2 11 NOL6 Nucleolar protein 6 yes no 2 0.013553 49.418 1 1.3886 1.2107 NaN 1 Median NaN NaN NaN 0 0 Median 1.3886 1.2107 NaN 1 0 Median 2598100 1221200 1376900 0 0 0 2598100 1221200 1376900 5256 2038 5384 13795 21545 21545 1 GPASVPSVGK KPPVRNPQNSTVLARGPASVPSVGKAVATA TVLARGPASVPSVGKAVATAAQAQTGPEED R G P G K A 1 0 0 0 0 0 0 2 0 0 0 1 0 0 2 2 0 0 0 2 0 0 10 0 897.49198 E7ETY2;B4DRA2;Q13428;Q59FZ2 Q13428 843 852 TCOF1 Treacle protein no no 2 0.00051176 85.676 1 2 1.7189 1.3403 28.934 3 Median 0.84917 0.90541 NaN 1 0 Median 1.8491 1.4609 12.184 2 0 Median 27689000 12887000 14802000 20870000 10799000 10071000 6819100 2088200 4730900 5257 1712;1225 5385 13796;13797;13798 21546;21547;21548 21546 3 GPATLVAPASVITIVK CEALQGFARSVAAARGPATLVAPASVITIV PATLVAPASVITIVKSTPGSGSGPAHGPDP R G P V K S 3 0 0 0 0 0 0 1 0 2 1 1 0 0 2 1 2 0 0 3 0 0 16 0 1535.9287 Q9ULX9 Q9ULX9 126 141 MAFF Transcription factor MafF yes yes 2 1.4448E-12 122.42 2 2 1.3256 1.2723 2.5494 4 Median 1.1092 1.2398 2.4633 2 0 Median 1.5862 1.2859 0.31113 2 0 Median 177360000 78236000 99122000 128900000 59369000 69529000 48460000 18867000 29593000 5258 2112 5386 13799;13800;13801;13802 21549;21550;21551;21552;21553;21554 21549 6 GPAVGIDLGTTYSCVGVFQHGK ______________________________ LGTTYSCVGVFQHGKVEIIANDQGNRTTPS K G P G K V 1 0 0 1 1 1 0 5 1 1 1 1 0 1 1 1 2 0 1 3 0 0 22 0 2262.1103 V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;B3KTV0;E9PNE6;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 V9HW22 4 25 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 3 3.5633E-22 113.63 2 2 1.1543 1.1132 12.718 4 Median 0.94955 1.0556 10.83 2 0 Median 1.4841 1.2017 14.134 2 0 Median 271640000 120420000 151230000 219040000 99299000 119740000 52600000 21117000 31484000 5259 1467 5387 13803;13804;13805;13806 21555;21556;21557;21558;21559;21560;21561;21562;21563 21563 9 GPCIIYNEDNGIIK AGKGKMRNRRRIQRRGPCIIYNEDNGIIKA RGPCIIYNEDNGIIKAFRNIPGITLLNVSK R G P I K A 0 0 2 1 1 0 1 2 0 4 0 1 0 0 1 0 0 0 1 0 0 0 14 0 1604.7868 P36578;Q59GY2;B4DMJ6;H3BM89;B4DFI6;Q53G74;B4DMJ2 P36578 206 219 RPL4 60S ribosomal protein L4 yes no 2 0.00017989 72.2 1 2 0.95329 0.82485 18.952 3 Median 0.95329 1.0931 NaN 1 0 Median 0.98038 0.79289 5.5874 2 0 Median 213350000 117810000 95538000 166380000 93509000 72872000 46966000 24300000 22666000 5260 1548 5388 13807;13808;13809 21564;21565;21566;21567 21564 4 GPCQESFYNLGR IVQGFSFLNRYLSLRGPCQESFYNLGRGLH SLRGPCQESFYNLGRGLHQLGLIHLAIHYY R G P G R G 0 1 1 0 1 1 1 2 0 0 1 0 0 1 1 1 0 0 1 0 0 0 12 0 1426.6299 Q9Y5Q9 Q9Y5Q9 808 819 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 0.0011892 70.908 2 1.1783 1.1831 NaN 1 Median 1.1783 1.1831 NaN 1 0 Median NaN NaN NaN 0 0 Median 9228000 4007400 5220700 9228000 4007400 5220700 0 0 0 5261 2150 5389 13810;13811 21568;21569 21568 2 GPDGLTAFEATDNQAIK EVKDYVAKGADKTVKGPDGLTAFEATDNQA DGLTAFEATDNQAIKALLQ___________ K G P I K A 3 0 1 2 0 1 1 2 0 1 1 1 0 1 1 0 2 0 0 0 0 0 17 0 1746.8424 C9JL85;Q69YG1;P58546 C9JL85 32 48 MTPN;DKFZp761E1322 Myotrophin yes no 2 5.4936E-07 95.094 2 1.0423 1.0635 1.6546 2 Median 1.0423 1.0635 1.6546 2 0 Median NaN NaN NaN 0 0 Median 42206000 20115000 22090000 42206000 20115000 22090000 0 0 0 5262 1137 5390 13812;13813 21570;21571 21570 2 GPDNSMGFGAER DDASAPRLMVLRQPRGPDNSMGFGAERKIR QPRGPDNSMGFGAERKIRQAGVID______ R G P E R K 1 1 1 1 0 0 1 3 0 0 0 0 1 1 1 1 0 0 0 0 0 0 12 0 1236.5193 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;E9PLT0;Q9UG93;Q8WU01;Q9UG12 Q9GZV0 747 758 CSDE1;DKFZp586J0620;DKFZp566C233 Cold shock domain-containing protein E1 yes no 2 1.1773E-05 101.39 2 4.3124 4.3422 12.982 2 Median 4.3124 4.3422 12.982 2 0 Median NaN NaN NaN 0 0 Median 35022000 6913200 28109000 35022000 6913200 28109000 0 0 0 5263 42 5391 13814;13815 21572;21573;21574 21573 24 3 GPECAAAATAGKPPRPDGPADPAK GTCEEASLPLERTLKGPECAAAATAGKPPR AGKPPRPDGPADPAKQGPLRTSARGLSRRL K G P A K Q 7 1 0 2 1 0 1 3 0 0 0 2 0 0 6 0 1 0 0 0 0 0 24 2 2301.1172 Q7Z5J4 Q7Z5J4 1742 1765 RAI1 Retinoic acid-induced protein 1 yes yes 3 0.0023589 34.914 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1355500 0 1355500 0 0 0 1355500 0 1355500 5264 1879 5392 13816 21575 21575 1 GPEEASSEVQDTNEVHVPGDQDEPQTLGK RSAGEAPSENQSPSKGPEEASSEVQDTNEV VHVPGDQDEPQTLGKKGSKNNISVYMTLNQ K G P G K K 1 0 1 3 0 3 5 3 1 0 1 1 0 0 3 2 2 0 0 3 0 0 29 0 3091.3854 Q96N64 Q96N64 529 557 PWWP2A PWWP domain-containing protein 2A yes yes 3 8.0978E-11 54.605 2 2 1.3446 1.0696 25.923 3 Median 0.69622 0.74312 NaN 1 0 Median 1.4226 1.1457 9.7203 2 0 Median 34127000 18555000 15573000 20963000 13181000 7781800 13165000 5373800 7790900 5265 1980 5393 13817;13818;13819;13820 21576;21577;21578;21579 21576 4 GPEPVPLEFIPAQGLLGR ELTAYEIFERDLKKKGPEPVPLEFIPAQGL PVPLEFIPAQGLLGRPGELCAQHFTLS___ K G P G R P 1 1 0 0 0 1 2 3 0 1 3 0 0 1 4 0 0 0 0 1 0 0 18 0 1889.0411 Q9BVI4 Q9BVI4 487 504 NOC4L Nucleolar complex protein 4 homolog yes yes 2 4.2184E-06 85.845 2 0.6796 0.70716 NaN 1 Median 0.6796 0.70716 NaN 1 0 Median NaN NaN NaN 0 0 Median 9900300 7001200 2899100 9900300 7001200 2899100 0 0 0 5266 2007 5394 13821;13822 21580;21581;21582;21583;21584 21584 5 GPEVTSNAALTLR SLVVVKILVIHDEQKGPEVTSNAALTLRNF QKGPEVTSNAALTLRNFCNWQKQHNPPSDR K G P L R N 2 1 1 0 0 0 1 1 0 0 2 0 0 0 1 1 2 0 0 1 0 0 13 0 1327.7096 B2RB33;Q8NE26;Q5HYL0;Q9UHI8;E5RJR7;E5RI60;H7C206;Q6ZP79 B2RB33 301 313 ADAMTS1;DKFZp686E01144 A disintegrin and metalloproteinase with thrombospondin motifs 1 yes no 2 6.235E-06 104.82 2 0.74506 0.76612 24.735 2 Median 0.74506 0.76612 24.735 2 0 Median NaN NaN NaN 0 0 Median 21864000 11130000 10734000 21864000 11130000 10734000 0 0 0 5267 877 5395 13823;13824 21585;21586 21585 2 GPFATFK NSEMVKLYDLRSFDKGPFATFKMQYDRTCE YDLRSFDKGPFATFKMQYDRTCEWTGLKFS K G P F K M 1 0 0 0 0 0 0 1 0 0 0 1 0 2 1 0 1 0 0 0 0 0 7 0 766.40138 A0A024R333;Q6UXN9;C9JBU3 A0A024R333 182 188 TMEM113;WDR82 WD repeat-containing protein 82 yes no 2 0.02074 78.616 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5268 128 5396 13825 21587 21587 1 GPFLVSAPLSTIINWER TAVFLYSLYKEGHSKGPFLVSAPLSTIINW FLVSAPLSTIINWEREFEMWAPDMYVVTYV K G P E R E 1 1 1 0 0 0 1 1 0 2 2 0 0 1 2 2 1 1 0 1 0 0 17 0 1899.0254 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;Q12873 F5GWX5 769 785 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 1.4574E-12 116.24 1 1 1.2691 1.107 NaN 1 Median NaN NaN NaN 0 0 Median 1.2691 1.107 NaN 1 0 Median 173270000 72308000 100960000 131740000 55195000 76550000 41528000 17113000 24415000 5269 515;1701 5397 13826;13827 21588;21589 21588 2 GPFTDVVTTNLK EQILVLDPPTDLKFKGPFTDVVTTNLKLRN KFKGPFTDVVTTNLKLRNPSDRKVCFKVKT K G P L K L 0 0 1 1 0 0 0 1 0 0 1 1 0 1 1 0 3 0 0 2 0 0 12 0 1290.682 A8KA83;Q9P0L0;Q59EZ6;Q53XM7;O95292;E5RK64 A8KA83 20 31 VAPA;VAPB Vesicle-associated membrane protein-associated protein A;Vesicle-associated membrane protein-associated protein B/C no no 2 0.00018342 75.387 2 1.5424 1.2422 3.9037 2 Median NaN NaN NaN 0 0 Median 1.5424 1.2422 3.9037 2 0 Median 10398000 4243700 6154700 0 0 0 10398000 4243700 6154700 5270 791;1423 5398 13828;13829 21590;21591 21591 2 GPFVTWQVVR VLCRIASNVLNTKVKGPFVTWQVVRDILHA NTKVKGPFVTWQVVRDILHATFEESLDKTS K G P V R D 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 1 1 0 3 0 0 10 0 1187.6451 Q6AHZ7;Q12789;Q6AWA4;H3BRD0 Q6AHZ7 1289 1298 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 6.7842E-05 83.206 2 1 1.7305 1.5139 NaN 1 Median NaN NaN NaN 0 0 Median 1.7305 1.5139 NaN 1 0 Median 9038300 405170 8633100 7656400 0 7656400 1381900 405170 976700 5271 1699 5399 13830;13831;13832 21592;21593;21594 21592 3 GPGASGEQPEPGEAAAGGAAEEAR LPPPLPPPSPPGSGRGPGASGEQPEPGEAA EPGEAAAGGAAEEARRLEQRWGFGLEELYG R G P A R R 7 1 0 0 0 1 5 6 0 0 0 0 0 0 3 1 0 0 0 0 0 0 24 0 2164.9621 A0A024R3P9;Q9H3P7 A0A024R3P9 50 73 ACBD3 Golgi resident protein GCP60 yes no 2 3.531E-47 139.49 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7336000 0 7336000 7336000 0 7336000 0 0 0 5272 136 5400 13833 21595 21595 1 GPGLASGQLYSYPAR VAQSNCYIWMEKRHRGPGLASGQLYSYPAR GPGLASGQLYSYPARRWRKKRRAHPPEDPR R G P A R R 2 1 0 0 0 1 0 3 0 0 2 0 0 0 2 2 0 0 2 0 0 0 15 0 1535.7732 A0A024R582;J3KMZ8;Q92785;E9PN04 A0A024R582 63 77 DPF2 Zinc finger protein ubi-d4 yes no 2 1.4238E-05 89.805 2 0.9439 0.95741 50.101 2 Median 0.9439 0.95741 50.101 2 0 Median NaN NaN NaN 0 0 Median 26135000 14744000 11391000 26135000 14744000 11391000 0 0 0 5273 174 5401 13834;13835 21596;21597 21596 2 GPGLGSTQGQTIALPAQGLIEFR NQRGRFLRIRQTVNRGPGLGSTQGQTIALP GQTIALPAQGLIEFRDALAKLIDDYGVEEE R G P F R D 2 1 0 0 0 3 1 5 0 2 3 0 0 1 2 1 2 0 0 0 0 0 23 0 2310.2332 Q2NLD4;Q2NLC9;Q5U0P9;Q56A79;Q00577 Q2NLD4 140 162 PURA Transcriptional activator protein Pur-alpha yes no 2 0.0039311 26.435 2 0.95772 0.96618 23.074 2 Median 0.95772 0.96618 23.074 2 0 Median NaN NaN NaN 0 0 Median 19596000 11150000 8446100 19596000 11150000 8446100 0 0 0 5274 1673 5402 13836;13837 21598;21599 21598 2 GPGNPVPGPLAPLPDYMSEEK ______________________________ PGPLAPLPDYMSEEKLQEKARKWQQLQAKR R G P E K L 1 0 1 1 0 0 2 3 0 0 2 1 1 0 6 1 0 0 1 1 0 0 21 0 2164.0511 Q6P2Q9;I3L0J9 Q6P2Q9 9 29 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 1.3384E-05 46.481 2 1.4245 1.437 8.4617 2 Median 1.4245 1.437 8.4617 2 0 Median NaN NaN NaN 0 0 Median 29443000 13445000 15997000 29443000 13445000 15997000 0 0 0 5275 1854 5403 13838;13839 21600;21601 21600 1712 2 GPGPLQER HNYHKFDSEYERMGRGPGPLQERSLFEKKR EYERMGRGPGPLQERSLFEKKRGAPPSSNI R G P E R S 0 1 0 0 0 1 1 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 8 0 852.44537 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991;H0Y8T4 D6REM6 256 263 MATR3;DKFZp686K23100 Matrin-3 yes no 2 0.0086013 77.923 1 1.5031 1.6619 NaN 1 Median 1.5031 1.6619 NaN 1 0 Median NaN NaN NaN 0 0 Median 58393000 23338000 35054000 58393000 23338000 35054000 0 0 0 5276 542 5404 13840 21602 21602 1 GPHLANSILFQSSGLTNGIIEEK EELEKNNAQSIRAIKGPHLANSILFQSSGL LFQSSGLTNGIIEEKDIHEELPKRKERKQE K G P E K D 1 0 2 0 0 1 2 3 1 3 3 1 0 1 1 3 1 0 0 0 0 0 23 0 2424.2649 A0A024R2Z6;Q9BVP2 A0A024R2Z6 433 455 GNL3 Guanine nucleotide-binding protein-like 3 yes no 3 2.6818E-23 121.25 2 2 0.98737 0.89704 12.428 4 Median 0.75853 0.79229 8.9064 2 0 Median 1.1724 0.9633 1.4223 2 0 Median 132140000 68344000 63792000 66813000 39150000 27663000 65323000 29193000 36130000 5277 125 5405 13841;13842;13843;13844 21603;21604;21605;21606;21607;21608 21604 6 GPIAFWAR VSKALMASMARRASRGPIAFWARRASRTRL MARRASRGPIAFWARRASRTRLAAWARRAL R G P A R R 2 1 0 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 8 0 916.49192 Q5H909;A0A024R9Y7;Q9UNF1 Q5H909 202 209 MAGED2 Melanoma-associated antigen D2 yes no 2 0.043015 52.683 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6882700 0 6882700 6882700 0 6882700 0 0 0 5278 292 5406 13845 21609 21609 1 GPILLPYQFR FHLGKIEELLSGENRGPILLPYQFRMEEIE SGENRGPILLPYQFRMEEIEGFRYRCRDAM R G P F R M 0 1 0 0 0 1 0 1 0 1 2 0 0 1 2 0 0 0 1 0 0 0 10 0 1202.6812 Q9NY93;Q53HB9;H7C3E9;H7BZN7 Q9NY93 410 419 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 2.9891E-08 119.89 3 1 0.94062 1.0506 5.6507 3 Median 0.92687 1.0565 0.79109 2 0 Median 1.1673 0.95842 NaN 1 0 Median 160170000 82591000 77580000 146380000 76317000 70066000 13788000 6274100 7513900 5279 2081 5407 13846;13847;13848;13849 21610;21611;21612;21613;21614 21610 5 GPILSFASTR LELNASDDRGIDIIRGPILSFASTRTIFKK IDIIRGPILSFASTRTIFKKGFKLVILDEA R G P T R T 1 1 0 0 0 0 0 1 0 1 1 0 0 1 1 2 1 0 0 0 0 0 10 0 1047.5713 Q6LES9;A8K3S0;Q59GW7;P40937;A8K4Z2;C9JH72;E9PEP3;F5H5S0 Q6LES9 103 112 RFC5 Replication factor C subunit 5 yes no 2 0.0029784 66.621 2 1 1.0716 1.0597 25.115 3 Median 1.1515 1.166 13.528 2 0 Median 0.89856 0.77988 NaN 1 0 Median 31066000 15718000 15348000 28904000 14585000 14319000 2162100 1133000 1029100 5280 726 5408 13850;13851;13852 21615;21616;21617 21616 3 GPIPSLFSGQHGPPPYGDSR DGPRGPPPARFGAQKGPIPSLFSGQHGPPP LFSGQHGPPPYGDSRGPSPSYLGGPRGVAP K G P S R G 0 1 0 1 0 1 0 4 1 1 1 0 0 1 5 3 0 0 1 0 0 0 20 0 2065.0017 Q9BTC0 Q9BTC0 1805 1824 DIDO1 Death-inducer obliterator 1 yes yes 3 6.2266E-05 37.624 2 2.1332 1.8404 3.6047 2 Median NaN NaN NaN 0 0 Median 2.1332 1.8404 3.6047 2 0 Median 8395500 2838000 5557500 0 0 0 8395500 2838000 5557500 5281 2002 5409 13853;13854 21618;21619;21620;21621 21619 4 GPISDALAHHLR DVGKTLCPLCFSILKGPISDALAHHLRERH ILKGPISDALAHHLRERHQVIQTVHPVEKK K G P L R E 2 1 0 1 0 0 0 1 2 1 2 0 0 0 1 1 0 0 0 0 0 0 12 0 1285.6891 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 633 644 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.0086098 36.252 1 1.6159 1.402 NaN 1 Median NaN NaN NaN 0 0 Median 1.6159 1.402 NaN 1 0 Median 2437800 1137100 1300600 0 0 0 2437800 1137100 1300600 5282 878 5410 13855 21622 21622 1 GPLAAGLGPLVPGK TFARTVARSPVAPARGPLAAGLGPLVPGKV RGPLAAGLGPLVPGKVAATSVITIVKSKTD R G P G K V 2 0 0 0 0 0 0 4 0 0 3 1 0 0 3 0 0 0 0 1 0 0 14 0 1245.7445 A0A024R8X1;O15525 A0A024R8X1 131 144 hCG_1991559;MAFG Transcription factor MafG yes no 2 1.1792E-21 148.52 2 2 1.4585 1.4194 6.5957 4 Linear 1.3747 1.399 4.5298 2 0 Median 1.5609 1.2628 2.2677 2 0 Median 74374000 29620000 44753000 59811000 23443000 36367000 14563000 6176900 8386100 5283 262 5411 13856;13857;13858;13859 21623;21624;21625;21626;21627;21628;21629;21630 21626 8 GPLEPSEPAVVAAAR DQRDLAQDEAVWLERGPLEPSEPAVVAAAR GPLEPSEPAVVAAARVGVGHAG________ R G P A R V 4 1 0 0 0 0 2 1 0 0 1 0 0 0 3 1 0 0 0 2 0 0 15 0 1462.778 A2IDA3;Q1W6H1;P29372 A2IDA3 230 244 MPG DNA-3-methyladenine glycosylase yes no 2 0.00016316 78.653 2 0.54703 0.46578 4.4673 2 Median NaN NaN NaN 0 0 Median 0.54703 0.46578 4.4673 2 0 Median 9532800 6194600 3338200 0 0 0 9532800 6194600 3338200 5284 651 5412 13860;13861 21631;21632;21633;21634 21634 4 GPLLEDGALSQAVSAGASSPEFTK METDILESLEDLGYKGPLLEDGALSQAVSA SQAVSAGASSPEFTKLCAWLVSELRVLCKL K G P T K L 4 0 0 1 0 1 2 3 0 0 3 1 0 1 2 4 1 0 0 1 0 0 24 0 2331.1594 I6L9E8;Q8NCA5;E9PH82;Q05CT2;C9J3G8 I6L9E8 21 44 FAM98A Protein FAM98A yes no 2 1.7416E-12 74.772 2 2 1.3468 1.1738 10.606 4 Median 1.2693 1.3 4.4492 2 0 Median 1.364 1.0879 0.7552 2 0 Median 61238000 25961000 35277000 41467000 17496000 23971000 19771000 8465000 11306000 5285 1324 5413 13862;13863;13864;13865 21635;21636;21637;21638;21639;21640;21641 21636 7 GPLLEEQALTK MEGDVLDTLEALGYKGPLLEEQALTKAAEG LGYKGPLLEEQALTKAAEGGLSSPEFSELC K G P T K A 1 0 0 0 0 1 2 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 11 0 1197.6605 Q52LJ0 Q52LJ0 27 37 FAM98B Protein FAM98B yes yes 2 0.00070269 72.321 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1199400 0 1199400 0 0 0 1199400 0 1199400 5286 1782 5414 13866;13867 21642;21643 21643 2 GPLLVSTESHPVK VFQKPSGVSAALALKGPLLVSTESHPVKSG LKGPLLVSTESHPVKSGIHKWISDYADSVP K G P V K S 0 0 0 0 0 0 1 1 1 0 2 1 0 0 2 2 1 0 0 2 0 0 13 0 1362.7507 Q9Y3A4 Q9Y3A4 137 149 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2;3 1.6302E-13 130.98 3 2 1.2322 1.1949 40.17 5 Median 1.0763 1.2094 44.755 3 0 Median 1.2442 0.99323 5.1507 2 0 Median 331270000 134300000 196970000 303560000 121770000 181800000 27707000 12536000 15171000 5287 2133 5415 13868;13869;13870;13871;13872 21644;21645;21646;21647;21648;21649;21650 21645 7 GPLMMYISK PDDEAAMGIKSCDPKGPLMMYISKMVPTSD KSCDPKGPLMMYISKMVPTSDKGRFYAFGR K G P S K M 0 0 0 0 0 0 0 1 0 1 1 1 2 0 1 1 0 0 1 0 0 0 9 0 1038.5242 P13639;Q8TA90;Q6PK56;B4DRE8 P13639 392 400 EEF2 Elongation factor 2 yes no 2 0.0012251 89.698 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5682100 0 5682100 5682100 0 5682100 0 0 0 5288 1478 5416 13873;13874 21651;21652 21651 1227;1228 2 GPLPAGTILK GQASTGPVTQIIQTKGPLPAGTILKLVTSA IIQTKGPLPAGTILKLVTSADGKPTTIITT K G P L K L 1 0 0 0 0 0 0 2 0 1 2 1 0 0 2 0 1 0 0 0 0 0 10 0 965.59097 A6NEM2;P51610 A6NEM2 714 723 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.011915 51.346 1 0.67264 0.67208 NaN 1 Median 0.67264 0.67208 NaN 1 0 Median NaN NaN NaN 0 0 Median 15207000 7368900 7838400 15207000 7368900 7838400 0 0 0 5289 680 5417 13875 21653 21653 1 GPLPLSSQHR TSSHNLQSIFNIGSRGPLPLSSQHRGDADQ NIGSRGPLPLSSQHRGDADQASNILASFGL R G P H R G 0 1 0 0 0 1 0 1 1 0 2 0 0 0 2 2 0 0 0 0 0 0 10 0 1090.5883 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991;D6R8Z5 D6REM6 93 102 MATR3;DKFZp686K23100 Matrin-3 yes no 2;3 3.1005E-06 110.41 4 2 1.1983 1.3864 29.167 6 Median 1.2914 1.4502 5.8554 4 0 Median 0.97012 0.8345 2.2481 2 0 Median 267400000 118120000 149280000 261160000 114960000 146200000 6238200 3160800 3077400 5290 542 5418 13876;13877;13878;13879;13880;13881 21654;21655;21656;21657;21658;21659;21660;21661;21662 21659 9 GPLQSVQVFGR ______________________________ MPSKGPLQSVQVFGRKKTATAVAHCKRGNG K G P G R K 0 1 0 0 0 2 0 2 0 0 1 0 0 1 1 1 0 0 0 2 0 0 11 0 1186.6459 P62249;M0R210;M0R3H0;A0A087WZ27;Q6IPX4 P62249 5 15 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 1.2424E-16 152.34 2 2 0.99069 0.99521 20.854 4 Median 1.0144 1.1947 4.0488 2 0 Median 0.96297 0.83542 2.9665 2 0 Median 1323300000 651100000 672250000 1184300000 578970000 605310000 139070000 72132000 66943000 5291 1636 5419 13882;13883;13884;13885 21663;21664;21665;21666;21667;21668;21669;21670;21671 21668 9 GPLSQEALMELFPK LTDLYYQRLALCGCKGPLSQEALMELFPKL KGPLSQEALMELFPKLQANISTGVSKIRLL K G P P K L 1 0 0 0 0 1 2 1 0 0 3 1 1 1 2 1 0 0 0 0 0 0 14 0 1558.8065 O75691 O75691 620 633 UTP20 Small subunit processome component 20 homolog yes yes 2 2.183E-05 93.839 1 1.5653 1.5467 NaN 1 Median 1.5653 1.5467 NaN 1 0 Median NaN NaN NaN 0 0 Median 25615000 8639300 16976000 25615000 8639300 16976000 0 0 0 5292 1412 5420 13886 21672;21673 21673 1103 2 GPLTVEETPR CQYHRLDVSLPFVSRGPLTVEETPRVQGET PFVSRGPLTVEETPRVQGETQPQRLLLAED R G P P R V 0 1 0 0 0 0 2 1 0 0 1 0 0 0 2 0 2 0 0 1 0 0 10 0 1097.5717 Q14676;B4DYH4;A2AB05;A1Z5I7;A1Z5I6 Q14676 143 152 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0014554 73.573 2 0.92073 0.95064 16.282 2 Median 0.92073 0.95064 16.282 2 0 Median NaN NaN NaN 0 0 Median 31390000 18365000 13025000 31390000 18365000 13025000 0 0 0 5293 1738 5421 13887;13888 21674;21675 21675 2 GPLVLPAGGGAQDESGSR KVDHKKGLRKSENPRGPLVLPAGGGAQDES VLPAGGGAQDESGSRIHHKNWTLASKRGGN R G P S R I 2 1 0 1 0 1 1 5 0 0 2 0 0 0 2 2 0 0 0 1 0 0 18 0 1666.8275 J3KNX4;D6W5Y8;A0A0D9SGJ8;Q2TAK8;Q13108;K7EP97 J3KNX4 189 206 MUM1;MUM-1 PWWP domain-containing protein MUM1 yes no 2 0.014891 29.341 1 1.6838 1.4613 NaN 1 Median NaN NaN NaN 0 0 Median 1.6838 1.4613 NaN 1 0 Median 2156800 877390 1279400 0 0 0 2156800 877390 1279400 5294 529 5422 13889 21676 21676 1 GPLVPFPNQK SAMKSEEQKIKDARKGPLVPFPNQKSEAAE KDARKGPLVPFPNQKSEAAEPPKTPPSSCD K G P Q K S 0 0 1 0 0 1 0 1 0 0 1 1 0 1 3 0 0 0 0 1 0 0 10 0 1095.6077 E3VVS3;A0A0C4DFR3;Q9NQR1;C9JKQ0 E3VVS3 92 101 SETD8 N-lysine methyltransferase SETD8 yes no 2 0.0011672 75.109 2 2 2.3629 2.1062 14.121 4 Median 1.8186 1.8726 4.25 2 0 Median 3.038 2.3727 4.4693 2 0 Median 41134000 14777000 26356000 34029000 13035000 20994000 7104800 1742500 5362300 5295 505 5423 13890;13891;13892;13893 21677;21678;21679;21680;21681 21679 5 GPPDFSSDEEREPTPVLGSGAAAAGR TARNRPPLPAGTNSKGPPDFSSDEEREPTP EPTPVLGSGAAAAGRSRAAVGRKATKKTDK K G P G R S 4 2 0 2 0 0 3 4 0 0 1 0 0 1 4 3 1 0 0 1 0 0 26 1 2569.2045 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;P42166 P42166 61 86 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 3 4.3523E-69 172.8 2 2 1.5395 1.5431 9.0763 4 Median 1.4379 1.6246 1.2149 2 0 Median 1.6116 1.41 6.6983 2 0 Median 262130000 110550000 151580000 226980000 96734000 130240000 35148000 13814000 21334000 5296 334;1562 5424 13894;13895;13896;13897 21682;21683;21684;21685;21686;21687;21688;21689;21690;21691 21682 10 GPPEPPPVQLELEDK YNIKGRQQAGPGPSKGPPEPPPVQLELEDK GPPEPPPVQLELEDKDTLKGVDASNALVLP K G P D K D 0 0 0 1 0 1 3 1 0 0 2 1 0 0 5 0 0 0 0 1 0 0 15 0 1643.8407 Q8IY37 Q8IY37 23 37 DHX37 Probable ATP-dependent RNA helicase DHX37 yes yes 2 0.00073709 51.092 1 2 1.0797 0.95086 15.708 3 Median 1.0797 1.1299 NaN 1 0 Median 1.1007 0.88606 9.9814 2 0 Median 25038000 13917000 11121000 15130000 8840500 6289400 9907800 5076700 4831100 5297 1897 5425 13898;13899;13900 21692;21693;21694;21695;21696 21693 5 GPPGPALPATMNNSSSETR ______________________________ PALPATMNNSSSETRGHPHSASSPSERVFP M G P T R G 2 1 2 0 0 0 1 2 0 0 1 0 1 0 4 3 2 0 0 0 0 0 19 0 1882.8843 A8K4T8;Q15003;C9JZP1 A8K4T8 2 20 NCAPH Condensin complex subunit 2 yes no 2 5.6961E-07 85.845 2 1 1.0015 1.1435 26.834 3 Median 0.99212 1.1177 3.2335 2 0 Median 2.1196 1.776 NaN 1 0 Median 169470000 86555000 82911000 165430000 84885000 80545000 4035300 1669300 2366000 5298 740 5426;5427 13901;13902;13903 21697;21698;21699;21700;21701 21700 575 5 GPPPSWGR VRVELSNGEKRSRNRGPPPSWGRRPRDDYR EKRSRNRGPPPSWGRRPRDDYRRRSPPPRR R G P G R R 0 1 0 0 0 0 0 2 0 0 0 0 0 0 3 1 0 1 0 0 0 0 8 0 852.42424 B2R6F3;P84103 B2R6F3 91 98 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 2 0.0033502 97.068 2 1.3713 1.4501 10.478 2 Median 1.3713 1.4501 10.478 2 0 Median NaN NaN NaN 0 0 Median 68448000 27272000 41175000 68448000 27272000 41175000 0 0 0 5299 841 5428 13904;13905 21702;21703;21704;21705 21702 4 GPQITGPSLEGDLGLK SVPSANIEGLEGKLKGPQITGPSLEGDLGL PQITGPSLEGDLGLKGAKPQGHIGVDASAP K G P L K G 0 0 0 1 0 1 1 4 0 1 3 1 0 0 2 1 1 0 0 0 0 0 16 0 1580.841 Q09666;B4DTV0 Q09666 372 387 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00019769 71.888 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36347000 0 36347000 36347000 0 36347000 0 0 0 5300 1696 5429 13906;13907 21706;21707 21707 2 GPQLVCTGSDDGTVK KGHTSFVNSCYPARRGPQLVCTGSDDGTVK GPQLVCTGSDDGTVKLWDIRKKAAIQTFRN R G P V K L 0 0 0 2 1 1 0 3 0 0 1 1 0 0 1 1 2 0 0 2 0 0 15 0 1532.7141 B2R9I9;A0MNP2;Q96DI7 B2R9I9 163 177 WDR57;SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2 0.0015724 70.685 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5301 643 5430 13908;13909 21708;21709 21709 2 GPQNAFFLVK KFPEKKGGLKELFGKGPQNAFFLVKFWADL ELFGKGPQNAFFLVKFWADLNCNIQDDAGA K G P V K F 1 0 1 0 0 1 0 1 0 0 1 1 0 2 1 0 0 0 0 1 0 0 10 0 1119.6077 H0YE88;P28347;E9PKB7;Q59EF3 H0YE88 280 289 TEAD1 Transcriptional enhancer factor TEF-1 yes no 2 2.6887E-17 136.16 2 2 0.96987 0.76827 3.992 3 Median 0.71684 0.73459 NaN 1 0 Median 0.97017 0.78176 2.4603 2 0 Median 20522000 10969000 9553400 10583000 5769600 4813800 9938500 5199000 4739600 5302 1291 5431 13910;13911;13912;13913 21710;21711;21712;21713;21714;21715;21716;21717 21712 8 GPQPPTVSPIR PFEKAAFQKQNDTPKGPQPPTVSPIRSSRP DTPKGPQPPTVSPIRSSRPPPAKRKKSQSR K G P I R S 0 1 0 0 0 1 0 1 0 1 0 0 0 0 4 1 1 0 0 1 0 0 11 0 1147.635 P46087 P46087 779 789 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.00077159 72.607 2 1.4676 1.6391 5.0758 2 Median 1.4676 1.6391 5.0758 2 0 Median NaN NaN NaN 0 0 Median 122360000 52689000 69666000 122360000 52689000 69666000 0 0 0 5303 1570 5432 13914;13915 21718;21719;21720;21721;21722 21719 5 GPQSLFNAPR PKGISAGAVQTAGKKGPQSLFNAPRGKKRP TAGKKGPQSLFNAPRGKKRPAPGSDEEEEE K G P P R G 1 1 1 0 0 1 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 10 0 1085.5618 P46087;F5H5X6;F5GWB7;F5H709 P46087 93 102 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 2.6602E-09 126.62 2 2 1.1075 1.0378 7.6859 4 Median 0.96198 1.0423 13.305 2 0 Median 1.2299 1.0378 0.088746 2 0 Median 96414000 47602000 48812000 85679000 42937000 42742000 10735000 4665500 6069500 5304 1570 5433 13916;13917;13918;13919 21723;21724;21725;21726;21727;21728;21729;21730 21726 8 GPSGGGEEPALSQYQR LWDGEDSSFLVVRLRGPSGGGEEPALSQYQ PSGGGEEPALSQYQRLLCINPPLFEIYQVL R G P Q R L 1 1 0 0 0 2 2 4 0 0 1 0 0 0 2 2 0 0 1 0 0 0 16 0 1631.754 B7Z5I6;J3KMX1;Q99567 B7Z5I6 85 100 NUP88 Nuclear pore complex protein Nup88 yes no 2 0.0010489 70.089 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5305 1095 5434 13920 21731 21731 1 GPSGLLTYTGK QYLDSLKVGDVVEFRGPSGLLTYTGKGHFN VEFRGPSGLLTYTGKGHFNIQPNKKSPPEP R G P G K G 0 0 0 0 0 0 0 3 0 0 2 1 0 0 1 1 2 0 1 0 0 0 11 0 1092.5815 H7C0R7;Q9UHQ9 H7C0R7 80 90 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 3.4347E-12 127.76 1 2 2.3322 1.977 NaN 1 Median NaN NaN NaN 0 0 Median 2.3322 1.977 NaN 1 0 Median 15925000 532310 15393000 14454000 0 14454000 1471500 532310 939190 5306 1315 5435 13921;13922;13923 21732;21733;21734 21732 3 GPSGLLVYQGK QYLESMQIGDTIEFRGPSGLLVYQGKGKFA IEFRGPSGLLVYQGKGKFAIRPDKKSNPII R G P G K G 0 0 0 0 0 1 0 3 0 0 2 1 0 0 1 1 0 0 1 1 0 0 11 0 1117.6132 A0A024R4X0;P00387;B1AHF3;Q6ZVI6 A0A024R4X0 134 144 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 2 2.0667E-05 90.601 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5307 164 5436 13924;13925;13926;13927 21735;21736;21737;21738 21737 4 GPSPFSPVQLHQLR ALIPGDPQAMSQPNRGPSPFSPVQLHQLRA RGPSPFSPVQLHQLRAQILAYKMLARGQPL R G P L R A 0 1 0 0 0 2 0 1 1 0 2 0 0 1 3 2 0 0 0 1 0 0 14 0 1561.8365 P51531;A0A0U1RQZ9;F6VDE0;A0A0A0MT03;A0A1B0GWA8;A0A1B0GU54;Q56A76;F6RS74 P51531 170 183 SMARCA2 Probable global transcription activator SNF2L2 yes no 3 0.036192 20.648 1 1.2205 1.2627 NaN 1 Median 1.2205 1.2627 NaN 1 0 Median NaN NaN NaN 0 0 Median 21711000 8452800 13258000 21711000 8452800 13258000 0 0 0 5308 1595 5437 13928 21739 21739 1 GPSSVEDIK QESFKKQEKTPKTPKGPSSVEDIKAKMQAS TPKTPKGPSSVEDIKAKMQASIEKGGSLPK K G P I K A 0 0 0 1 0 0 1 1 0 1 0 1 0 0 1 2 0 0 0 1 0 0 9 0 930.46583 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;A0A024R3V9;Q9NX34 A0A0S2Z4G7 211 219 NPM1;hCG_37498 Nucleophosmin no no 2 5.947E-05 103.56 2 2 0.59648 0.50418 4.346 2 Median NaN NaN NaN 0 0 Median 0.59648 0.50418 4.346 2 0 Median 557980000 70678000 487300000 445240000 0 445240000 112740000 70678000 42058000 5309 559;2078 5438 13929;13930;13931;13932 21740;21741;21742;21743;21744;21745 21740 6 GPSWDPFR ______________________________ VPFSLLRGPSWDPFRDWYPHSRLFDQAFGL R G P F R D 0 1 0 1 0 0 0 1 0 0 0 0 0 1 2 1 0 1 0 0 0 0 8 0 960.44537 V9HW43;P04792;F8WE04 V9HW43 13 20 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 0.0058564 89.142 2 2 1.2143 1.3813 17.74 3 Plateau 1.2143 1.3761 1.6147 2 0 Median 1.1838 1.0127 NaN 1 0 Median 211070000 105210000 105850000 206200000 102250000 103950000 4865100 2965200 1899900 5310 1443 5439 13933;13934;13935;13936 21746;21747;21748;21749;21750 21748 5 GPTEADELMK ELEKPKPIPYIYGSRGPTEADELMKRVGFQ IYGSRGPTEADELMKRVGFQYEGTYKWVNP R G P M K R 1 0 0 1 0 0 2 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 10 0 1089.5012 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;Q0PHS4 Q2VF42 448 457 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.0017528 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4161100 0 4161100 4161100 0 4161100 0 0 0 5311 775 5440 13937 21751;21752 21752 606 2 GPTPATPESFSK SGKRQRSSGIWENGRGPTPATPESFSKKSK NGRGPTPATPESFSKKSKKAVMSGIHPAED R G P S K K 1 0 0 0 0 0 1 1 0 0 0 1 0 1 3 2 2 0 0 0 0 0 12 0 1217.5928 P49454 P49454 3040 3051 CENPF Centromere protein F yes yes 2 0.043261 33.744 1 0.63804 0.65299 NaN 1 Median 0.63804 0.65299 NaN 1 0 Median NaN NaN NaN 0 0 Median 10539000 5555400 4983300 10539000 5555400 4983300 0 0 0 5312 1581 5441 13938 21753 21753 1 GPTPFNQNQLHQLR PLDGADPQALGQQNRGPTPFNQNQLHQLRA RGPTPFNQNQLHQLRAQIMAYKMLARGQPL R G P L R A 0 1 2 0 0 3 0 1 1 0 2 0 0 1 2 0 1 0 0 0 0 0 14 0 1648.8434 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;A5D6X0 A7E2E1 168 181 SMARCA4 Transcription activator BRG1 yes no 3 7.4272E-10 94.122 2 1 0.81052 0.91128 6.1741 2 Median 0.81052 0.91128 6.1741 2 0 Median NaN NaN NaN 0 0 Median 155890000 88977000 66914000 151080000 88977000 62106000 4808200 0 4808200 5313 695 5442 13939;13940;13941 21754;21755;21756;21757;21758 21754 5 GPTVSNIR EDYRRLKSLLIDFFRGPTVSNIRLAGLEYV LLIDFFRGPTVSNIRLAGLEYVLHFTALNG R G P I R L 0 1 1 0 0 0 0 1 0 1 0 0 0 0 1 1 1 0 0 1 0 0 8 0 842.46102 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 169 176 RPF2 Ribosome production factor 2 homolog yes no 2 0.0010332 113.7 2 2 0.96017 0.90075 12.149 4 Median 0.8947 1.0183 11.119 2 0 Median 0.97678 0.85233 1.581 2 0 Median 149050000 79420000 69630000 137650000 73579000 64069000 11403000 5841200 5561700 5314 773 5443 13942;13943;13944;13945 21759;21760;21761;21762;21763;21764;21765 21761 7 GPVEGYEENEEFLR FLEAADNLRLIQVPKGPVEGYEENEEFLRT KGPVEGYEENEEFLRTMHHLLLEVRSGPSL K G P L R T 0 1 1 0 0 0 5 2 0 0 1 0 0 1 1 0 0 0 1 1 0 0 14 0 1666.7475 F5GX77;A0A024R565;Q9UI30;F5GYQ2 F5GX77 69 82 TRMT112;HSPC152 Multifunctional methyltransferase subunit TRM112-like protein yes no 2 6.1681E-21 171.92 1 1 2.1451 2.1031 4.374 2 Median 1.8612 2.039 NaN 1 0 Median 2.4723 2.1691 NaN 1 0 Median 35058000 14587000 20470000 31465000 13322000 18143000 3593000 1265300 2327700 5315 170 5444 13946;13947 21766;21767;21768 21766 3 GPVFAPPYEPLPENVK ERYPEGIKWKFLEHKGPVFAPPYEPLPENV PVFAPPYEPLPENVKFYYDGKVMKLSPKAE K G P V K F 1 0 1 0 0 0 2 1 0 0 1 1 0 1 5 0 0 0 1 2 0 0 16 0 1752.9087 P11387;B9EG90 P11387 224 239 TOP1 DNA topoisomerase 1 yes no 2 4.2336E-12 116.84 2 2 1.2824 1.3127 0.19594 4 Median 1.1136 1.3153 0.2566 2 0 Median 1.4901 1.3124 0.0010919 2 0 Median 1724000000 765600000 958360000 945220000 451380000 493840000 778750000 314220000 464530000 5316 1470 5445 13948;13949;13950;13951 21769;21770;21771;21772;21773;21774;21775;21776;21777;21778 21777 10 GPVGLEGLLTTK LGAEVGISTSRIHARGPVGLEGLLTTKWLL HARGPVGLEGLLTTKWLLRGKDHVVSDFSE R G P T K W 0 0 0 0 0 0 1 3 0 0 3 1 0 0 1 0 2 0 0 1 0 0 12 0 1183.6812 P54886 P54886 750 761 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.00023339 85.533 2 2 1.9209 1.7517 26.271 4 Median 2.0694 2.2245 10.099 2 0 Median 1.7862 1.4312 4.8865 2 0 Median 104200000 38110000 66087000 93633000 34520000 59113000 10563000 3589600 6973800 5317 1611 5446 13952;13953;13954;13955 21779;21780;21781;21782;21783 21779 5 GPVGTVSEAQLAR DEDRLDNAVRGPGPKGPVGTVSEAQLARRL PKGPVGTVSEAQLARRLTKVKNSRRMLSNK K G P A R R 2 1 0 0 0 1 1 2 0 0 1 0 0 0 1 1 1 0 0 2 0 0 13 0 1283.6834 Q9NZM1 Q9NZM1 168 180 MYOF Myoferlin yes yes 2 0.0030136 65.5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5318 2088 5447 13956 21784 21784 1 GPVLEALVAR RLIILDEIHLLHDDRGPVLEALVARAIRNI LHDDRGPVLEALVARAIRNIEMTQEDVRLI R G P A R A 2 1 0 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 0 2 0 0 10 0 1023.6077 O75643;A4FU77;Q9H8B9 O75643 625 634 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.8355E-05 98.933 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7000500 7000500 0 7000500 7000500 0 0 0 0 5319 1411 5448 13957;13958 21785;21786 21785 2 GPVTIPYPLFQSHVEDLYVEGLPEGIPFR EELFERKYAQAIKAKGPVTIPYPLFQSHVE EDLYVEGLPEGIPFRRPSTYGIPRLERILL K G P F R R 0 1 0 1 0 1 3 3 1 2 3 0 0 2 5 1 1 0 2 3 0 0 29 0 3268.6809 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347 X5D2J9 340 368 GTF2I General transcription factor II-I yes no 3 3.0119E-07 45.511 1 0.99569 1.0642 NaN 1 Median 0.99569 1.0642 NaN 1 0 Median NaN NaN NaN 0 0 Median 44883000 23684000 21199000 44883000 23684000 21199000 0 0 0 5320 789 5449 13959 21787 21787 1 GPVTIVSGK CLIRNFTRQKLTEIRGPVTIVSGKKRRLTI KLTEIRGPVTIVSGKKRRLTIIECGCDINM R G P G K K 0 0 0 0 0 0 0 2 0 1 0 1 0 0 1 1 1 0 0 2 0 0 9 0 856.50182 Q14692 Q14692 116 124 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0042156 69.825 1 1 1.3321 1.2453 3.7658 2 Median 1.1959 1.2789 NaN 1 0 Median 1.4839 1.2126 NaN 1 0 Median 42503000 18691000 23812000 36913000 16383000 20530000 5590600 2308000 3282600 5321 1742 5450 13960;13961 21788;21789;21790 21788 3 GPYESGSGHSSGLGHQESR SYGPHGYGSGRSSSRGPYESGSGHSSGLGH SGSGHSSGLGHQESRSGQSSGYGQHGSSSG R G P S R S 0 1 0 0 0 1 2 5 2 0 1 0 0 0 1 5 0 0 1 0 0 0 19 0 1927.8409 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 572 590 HRNR Hornerin yes no 3 0.00039308 52.045 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3061200 3061200 0 3061200 3061200 0 0 0 0 + 5322 1179 5451 13962;13963 21791;21792 21791 2 GPYESGSGHSSGLGHR SYGPYRSGSGWSSSRGPYESGSGHSSGLGH PYESGSGHSSGLGHRESRSGQSSGYGQHGS R G P H R E 0 1 0 0 0 0 1 5 2 0 1 0 0 0 1 4 0 0 1 0 0 0 16 0 1583.7077 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1038 1053 HRNR Hornerin yes no 2;3 0.00049748 64.121 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30880000 30880000 0 27576000 27576000 0 3304700 3304700 0 + 5323 1179 5452 13964;13965;13966;13967;13968 21793;21794;21795;21796;21797 21793 5 GPYHFR YLAFLRKRMNTNPSRGPYHFRAPSRIFWRT KRMNTNPSRGPYHFRAPSRIFWRTVRGMLP R G P F R A 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 0 6 0 775.37656 Q53H34;P40429;Q9BSQ6;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;B4DNC8 Q53H34 69 74 RPL13A;RPL13a 60S ribosomal protein L13a yes no 2 0.040268 89.775 1 2 0.87187 0.74771 10.168 2 Median NaN NaN NaN 0 0 Median 0.87187 0.74771 10.168 2 0 Median 56271000 29532000 26739000 0 0 0 56271000 29532000 26739000 5324 1558 5453 13969;13970;13971 21798;21799;21800 21798 3 GQAAVQQLQAEGLSPR LFSGDVVLTARDVTRGQAAVQQLQAEGLSP QAAVQQLQAEGLSPRFHQLDIDDLQSIRAL R G Q P R F 3 1 0 0 0 4 1 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 16 0 1651.8642 E9PQ63;A8MTM1;P16152 E9PQ63 43 58 CBR1 Carbonyl reductase [NADPH] 1 no no 2 6.1564E-08 105.65 2 1 1.6784 1.4877 NaN 1 Median NaN NaN NaN 0 0 Median 1.6784 1.4877 NaN 1 0 Median 1562100 563450 998660 0 0 0 1562100 563450 998660 5325 795 5454 13972;13973;13974 21801;21802;21803 21802 3 GQATDIAIQAEEIMK PNSRIMIHQPSGGARGQATDIAIQAEEIMK GQATDIAIQAEEIMKLKKQLYNIYAKHTKQ R G Q M K L 3 0 0 1 0 2 2 1 0 3 0 1 1 0 0 0 1 0 0 0 0 0 15 0 1616.808 M0R208;Q16740;M0QYV5 M0R208 99 113 CLPP ATP-dependent Clp protease proteolytic subunit;ATP-dependent Clp protease proteolytic subunit, mitochondrial yes no 2 0.0033677 50.354 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5726400 0 5726400 5726400 0 5726400 0 0 0 5326 1356 5455 13975 21804 21804 1024 1 GQCYLYMK CPLANSQYATIKEEKGQCYLYMKVIERAAF ATIKEEKGQCYLYMKVIERAAFPRRLWERV K G Q M K V 0 0 0 0 1 1 0 1 0 0 1 1 1 0 0 0 0 0 2 0 0 0 8 0 1061.4674 Q9BXY0;H0YBV6;A0PJ56 Q9BXY0 59 66 MAK16 Protein MAK16 homolog yes no 2 0.012107 55.504 1 1.1435 1.1496 NaN 1 Median 1.1435 1.1496 NaN 1 0 Median NaN NaN NaN 0 0 Median 7053000 3092400 3960600 7053000 3092400 3960600 0 0 0 5327 2016 5456 13976 21805 21805 1853 1 GQDIEYIEIR EINKIIRDLWRSTYRGQDIEYIEIRSDADE RSTYRGQDIEYIEIRSDADENVSASDKRRN R G Q I R S 0 1 0 1 0 1 2 1 0 3 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1234.6194 Q92878;H7C0V2 Q92878 1157 1166 RAD50 DNA repair protein RAD50 yes no 2 0.0016591 72.643 1 0.37551 0.3267 NaN 1 Median NaN NaN NaN 0 0 Median 0.37551 0.3267 NaN 1 0 Median 1539900 1155800 384160 0 0 0 1539900 1155800 384160 5328 1953 5457 13977 21806 21806 1 GQDPGAPQLQSESK ARLEAQEQAFLARLKGQDPGAPQLQSESKP KGQDPGAPQLQSESKPPKKKKKKRRQKEEE K G Q S K P 1 0 0 1 0 3 1 2 0 0 1 1 0 0 2 2 0 0 0 0 0 0 14 0 1440.6845 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 187 200 GPATCH4 G patch domain-containing protein 4 yes no 2 0.0024031 63.473 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5329 1820 5458 13978 21807 21807 1 GQDPGAPQLQSESKPPK ARLEAQEQAFLARLKGQDPGAPQLQSESKP DPGAPQLQSESKPPKKKKKKRRQKEEEEAT K G Q P K K 1 0 0 1 0 3 1 2 0 0 1 2 0 0 4 2 0 0 0 0 0 0 17 1 1762.885 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 187 203 GPATCH4 G patch domain-containing protein 4 yes no 2;3 3.8065E-08 100.22 4 2 1.0824 1.2667 16.268 6 Median 1.092 1.2506 1.4125 4 0 Linear 2.0136 1.7116 3.2114 2 0 Median 224370000 102090000 122280000 201020000 94039000 106980000 23348000 8054100 15294000 5330 1820 5459 13979;13980;13981;13982;13983;13984 21808;21809;21810;21811;21812;21813;21814;21815;21816;21817;21818 21813 11 GQDPGAPQLQSESKPPKK ARLEAQEQAFLARLKGQDPGAPQLQSESKP PGAPQLQSESKPPKKKKKKRRQKEEEEATA K G Q K K K 1 0 0 1 0 3 1 2 0 0 1 3 0 0 4 2 0 0 0 0 0 0 18 2 1890.9799 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 187 204 GPATCH4 G patch domain-containing protein 4 yes no 3 1.2923E-05 77.468 2 2 1.4898 1.5818 30.421 4 Median 1.0024 1.189 20.414 2 0 Median 1.9963 1.9213 7.5433 2 0 Median 31650000 14585000 17065000 24029000 11901000 12128000 7621000 2684300 4936700 5331 1820 5460 13985;13986;13987;13988 21819;21820;21821;21822;21823;21824;21825;21826;21827 21823 9 GQDSEQPQAQLQPEAQLHAPAQPQPQLQLQLQSHK KPGSMQPRHLKSPVRGQDSEQPQAQLQPEA AQPQPQLQLQLQSHKGFLEQEGSPLSLGQS R G Q H K G 4 0 0 1 0 12 2 1 2 0 5 1 0 0 5 2 0 0 0 0 0 0 35 0 3895.9565 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1179 1213 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 4 0.0045945 23.891 1 1.1271 1.2033 NaN 1 Median 1.1271 1.2033 NaN 1 0 Median NaN NaN NaN 0 0 Median 23138000 11589000 11549000 23138000 11589000 11549000 0 0 0 5332 1260 5461 13989 21828 21828 1 GQDWIALVK CLKRMHIKAMPEDAKGQDWIALVKAAAAAA MPEDAKGQDWIALVKAAAAAAAKNKTGSKP K G Q V K A 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 9 0 1028.5655 A0A0A0MQS0;F8W9L8;E9PM57 A0A0A0MQS0 142 150 PHF20L1 yes no 3 0.037171 21.686 1 0.52512 0.59188 NaN 1 Median 0.52512 0.59188 NaN 1 0 Median NaN NaN NaN 0 0 Median 127810000 81007000 46801000 127810000 81007000 46801000 0 0 0 5333 461 5462 13990 21829 21829 1 GQEADLEAGGEEVPEANGSAGK HQENSRNQKPKKRKKGQEADLEAGGEEVPE AGGEEVPEANGSAGKRSKKKKQRKDSASEE K G Q G K R 4 0 1 1 0 1 5 5 0 0 1 1 0 0 1 1 0 0 0 1 0 0 22 0 2113.94 Q9NX58 Q9NX58 226 247 LYAR Cell growth-regulating nucleolar protein yes yes 2 6.9328E-38 149.31 2 0.84064 0.90172 15.612 2 Median 0.84064 0.90172 15.612 2 0 Median NaN NaN NaN 0 0 Median 70067000 36583000 33484000 70067000 36583000 33484000 0 0 0 5334 2079 5463 13991;13992 21830;21831;21832;21833;21834 21832 5 GQEEISGALPVASPASSR AGLWPALRKHFRSSRGQEEISGALPVASPA EISGALPVASPASSRTDLVKSELLHIESQV R G Q S R T 3 1 0 0 0 1 2 2 0 1 1 0 0 0 2 4 0 0 0 1 0 0 18 0 1754.8799 H0Y9D5;H0Y8S9;Q9UBK8 H0Y9D5 88 105 MTRR Methionine synthase reductase yes no 2 1.9839E-09 88.282 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10799000 0 10799000 10799000 0 10799000 0 0 0 5335 1287 5464 13993;13994 21835;21836;21837 21835 3 GQEVETSVTYYR ______________________________ DGKGQEVETSVTYYRLEEVAKRNSLKELWL K G Q Y R L 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 1 2 0 2 2 0 0 12 0 1430.6678 Q5HYD9;D6RFH4;H3BUX2;J3KNF8;O43169 Q5HYD9 13 24 DKFZp686M0619;CYB5B Cytochrome b5 type B yes no 2 1.389E-06 117.02 3 1.8365 1.9373 7.949 2 Median 1.8365 1.9373 7.949 2 0 Median NaN NaN NaN 0 0 Median 62056000 22574000 39482000 62056000 22574000 39482000 0 0 0 5336 1201 5465 13995;13996;13997 21838;21839;21840;21841 21839 4 GQFCGPCLR DTKTVCRNQGCCGVRGQFCGPCLRNRYGED GCCGVRGQFCGPCLRNRYGEDVRSALLDPD R G Q L R N 0 1 0 0 2 1 0 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 9 0 1093.4797 A8K8X5;A0A024RA51;Q96GN5;B4DM13;Q9BWT1 A8K8X5 377 385 CDCA7L;CDCA7 Cell division cycle-associated 7-like protein;Cell division cycle-associated protein 7 yes no 2 0.012656 57.281 1 2 0.98195 0.85253 64.622 3 Median 0.27215 0.28653 NaN 1 0 Median 0.99219 0.87663 3.9411 2 0 Median 27559000 19043000 8516700 23199000 16975000 6224300 4360600 2068100 2292400 5337 295 5466 13998;13999;14000 21842;21843;21844 21842 3 GQFNFDHPDAFDNELILK FYRVLTSEQKAKALKGQFNFDHPDAFDNEL NFDHPDAFDNELILKTLKEITEGKTVQIPV K G Q L K T 1 0 2 3 0 1 1 1 1 1 2 1 0 3 1 0 0 0 0 0 0 0 18 0 2119.0011 A0A024R912;Q9BZX2;B4DGD3 A0A024R912 79 96 UCK2 Uridine kinase;Uridine-cytidine kinase 2 yes no 3 2.0214E-05 53.278 1 2 2.0382 1.5905 23.273 3 Median 2.1587 2.1979 NaN 1 0 Median 1.8953 1.4918 9.0604 2 0 Median 21958000 7127000 14831000 14161000 3972700 10188000 7797200 3154300 4642900 5338 268 5467 14001;14002;14003 21845;21846;21847;21848 21845 4 GQGASRPHAPGTPAGR SDRRGPERRGGKRDRGQGASRPHAPGTPAG QGASRPHAPGTPAGRVRPELKTKQQILKQR R G Q G R V 3 2 0 0 0 1 0 4 1 0 0 0 0 0 3 1 1 0 0 0 0 0 16 1 1515.7655 Q8TDD1 Q8TDD1 803 818 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.00012347 56.746 2 1 0.80752 0.89837 35.017 3 Median 0.66436 0.72678 29.976 2 0 Median 1.303 1.1778 NaN 1 0 Median 28440000 15251000 13189000 25401000 13961000 11440000 3039700 1290300 1749400 5339 1933 5468 14004;14005;14006 21849;21850;21851;21852 21850 4 GQHEPSKPPPAGETVTGGFGAK QPLLELTPRAPGSPRGQHEPSKPPPAGETV PPPAGETVTGGFGAKKRKGSSSQAPASKKL R G Q A K K 2 0 0 0 0 1 2 5 1 0 0 2 0 1 4 1 2 0 0 1 0 0 22 1 2148.06 Q9H6F5 Q9H6F5 191 212 CCDC86 Coiled-coil domain-containing protein 86 yes yes 3;4 1.4583E-09 85.013 3 2 0.67363 0.78135 43.294 5 Median 0.78038 0.90599 10.494 3 0 Median 0.47346 0.40315 1.0274 2 0 Median 246080000 132400000 113680000 230540000 121810000 108730000 15547000 10596000 4950900 5340 2037 5469 14007;14008;14009;14010;14011 21853;21854;21855;21856;21857;21858;21859;21860;21861 21856 9 GQILMPNIGYGSNK RKPRGIDNRVRRRFKGQILMPNIGYGSNKK KGQILMPNIGYGSNKKTKHMLPSGFRKFLV K G Q N K K 0 0 2 0 0 1 0 3 0 2 1 1 1 0 1 1 0 0 1 0 0 0 14 0 1490.7551 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 51 64 RPL32 60S ribosomal protein L32 yes no 2 1.5163E-14 127.87 6 6 1.0579 0.84823 61.184 10 Median 1.2602 1.4356 4.5346 4 0 Median 0.49592 0.40124 39.596 6 0 Median 526490000 235570000 290920000 473050000 201650000 271390000 53445000 33916000 19529000 5341 112 5470;5471 14012;14013;14014;14015;14016;14017;14018;14019;14020;14021;14022;14023 21862;21863;21864;21865;21866;21867;21868;21869;21870;21871;21872;21873;21874;21875;21876;21877;21878;21879;21880;21881 21868 97 20 GQILMPNIGYGSNKK RKPRGIDNRVRRRFKGQILMPNIGYGSNKK GQILMPNIGYGSNKKTKHMLPSGFRKFLVH K G Q K K T 0 0 2 0 0 1 0 3 0 2 1 2 1 0 1 1 0 0 1 0 0 0 15 1 1618.8501 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 51 65 RPL32 60S ribosomal protein L32 yes no 2;3 7.534E-05 63.682 4 3 1.085 1.1024 40.8 6 Median 1.1053 1.2814 7.2215 3 0 Median 1.0608 0.91924 41.887 3 0 Median 204950000 95813000 109140000 192750000 89198000 103560000 12195000 6614900 5579800 5342 112 5472;5473 14024;14025;14026;14027;14028;14029;14030 21882;21883;21884;21885;21886;21887;21888;21889;21890;21891;21892;21893 21883 97 12 GQIQVILGPMFSGK INLPTVLPGSPSKTRGQIQVILGPMFSGKS RGQIQVILGPMFSGKSTELMRRVRRFQIAQ R G Q G K S 0 0 0 0 0 2 0 3 0 2 1 1 1 1 1 1 0 0 0 1 0 0 14 0 1473.8014 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3;K7ES52;K7ERJ1;K7ENW5 B5BUF9 19 32 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2 2.0351E-05 90.653 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10183000 0 10183000 10183000 0 10183000 0 0 0 5343 252 5474 14031 21894 21894 189 1 GQLCELSCSTDYR KNNRDLDFTIDLDFKGQLCELSCSTDYRMR FKGQLCELSCSTDYRMR_____________ K G Q Y R M 0 1 0 1 2 1 1 1 0 0 2 0 0 0 0 2 1 0 1 0 0 0 13 0 1587.6657 E9PKG1;Q5U8W9;H7C2I1;Q99873;A0A087X1W2 E9PKG1 311 323 PRMT1;HRMT1L2 Protein arginine N-methyltransferase 1 yes no 2 0.0025346 69.01 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6635300 0 6635300 6635300 0 6635300 0 0 0 5344 1243 5475 14032 21895 21895 1 GQLEALQVDGGR SRLPDIFEAQIAGLRGQLEALQVDGGRLEA GLRGQLEALQVDGGRLEAELRSMQDVVEDF R G Q G R L 1 1 0 1 0 2 1 3 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1241.6364 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 150 161 KRT7 Keratin, type II cytoskeletal 7 no no 2 4.6247E-16 121.41 2 2 0.92721 0.7568 6.3014 2 Median NaN NaN NaN 0 0 Median 0.92721 0.7568 6.3014 2 0 Median 82912000 14681000 68231000 54054000 0 54054000 28858000 14681000 14177000 + 5345 1171;1158 5476 14033;14034;14035;14036 21896;21897;21898;21899;21900;21901;21902 21898 7 GQLEANLLQVLEK QGRLQEELRKVSQERGQLEANLLQVLEKVE ERGQLEANLLQVLEKVEEFRIRYEDEISKR R G Q E K V 1 0 1 0 0 2 2 1 0 0 4 1 0 0 0 0 0 0 0 1 0 0 13 0 1453.814 CON__Q6KB66-1;Q6KB66;CON__Q0VBK2 CON__Q6KB66-1 151 163 KRT80 Keratin, type II cytoskeletal 80 yes no 2 0.0031445 66.267 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1217500 1217500 0 0 0 0 1217500 1217500 0 + 5346 1177 5477 14037 21903 21903 1 GQLEQITGK RPQLLKNALQRAVERGQLEQITGKGASGTF QRAVERGQLEQITGKGASGTFQLKKSGEKP R G Q G K G 0 0 0 0 0 2 1 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 972.52401 Q5SSJ5;X6RGJ2;B0QZK4 Q5SSJ5 312 320 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.00027741 103.74 2 2 0.88743 0.86112 12.32 4 Median 0.83448 0.95386 1.7604 2 0 Median 0.93778 0.77242 2.6689 2 0 Median 412080000 228160000 183920000 342530000 193090000 149440000 69549000 35073000 34476000 5347 1817 5478 14038;14039;14040;14041 21904;21905;21906;21907;21908;21909;21910;21911;21912 21907 9 GQLESIVENIR GRGGSMLGTKRTLPKGQLESIVENIRIYGI TLPKGQLESIVENIRIYGIHALLVVGGFEA K G Q I R I 0 1 1 0 0 1 2 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1256.6725 P17858;Q7L2M7;Q9BSP4;B3KNQ7;Q59GI2;Q7Z3R9;Q6MZK4 P17858 475 485 PFKL;DKFZp686G1648;DKFZp686L2097 ATP-dependent 6-phosphofructokinase, liver type yes no 2 0.00016552 94.297 1 2 1.1532 1.2454 47.884 3 Plateau 1.1532 1.2454 NaN 1 0 Median 0.64895 0.54552 6.5528 2 0 Median 59297000 25087000 34210000 48541000 18621000 29920000 10756000 6465900 4289800 5348 1495 5479 14042;14043;14044 21913;21914;21915 21913 3 GQLNADEISLRPAQSFLMNK LQGQSKDMPPRFSKKGQLNADEISLRPAQS DEISLRPAQSFLMNKNQVPKLQPQITMIPP K G Q N K N 2 1 2 1 0 2 1 1 0 1 3 1 1 1 1 2 0 0 0 0 0 0 20 1 2231.1369 D3DQV9;Q59G42;B4DZF2;P78344;Q2TU89 D3DQV9 465 484 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 3 2.9833E-05 58.693 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25224000 0 25224000 25224000 0 25224000 0 0 0 5349 1054 5480 14045;14046 21916;21917 21917 824 2 GQLSWHQK GLGGEFVTTIAYSIRGQLSWHQKTYAFSEN TIAYSIRGQLSWHQKTYAFSENPLPTVEIA R G Q Q K T 0 0 0 0 0 2 0 1 1 0 1 1 0 0 0 1 0 1 0 0 0 0 8 0 982.49846 Q9H836;G5E975;Q12824;B5MCL5 Q9H836 326 333 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 2 0.0083247 79.116 2 0.81994 0.83805 1.317 2 Median 0.81994 0.83805 1.317 2 0 Median NaN NaN NaN 0 0 Median 31807000 17318000 14489000 31807000 17318000 14489000 0 0 0 5350 1276 5481 14047;14048 21918;21919;21920 21920 3 GQNLLQTQDHAK LKSLPDTELMKDTARGQNLLQTQDHAKAPK TARGQNLLQTQDHAKAPKSEKGKITKMPCQ R G Q A K A 1 0 1 1 0 3 0 1 1 0 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1351.6844 P46013 P46013 982 993 MKI67 Antigen KI-67 yes yes 2;3 3.8696E-210 303.08 4 4 2.3645 2.3521 17.819 8 Median 1.7535 2.0616 1.6399 4 0 Median 3.3941 2.8669 5.4133 4 0 Median 1651500000 566030000 1085400000 1350000000 494020000 855930000 301510000 72006000 229500000 5351 1569 5482 14049;14050;14051;14052;14053;14054;14055;14056 21921;21922;21923;21924;21925;21926;21927;21928;21929;21930;21931;21932;21933;21934 21926 14 GQNWLIYTYGVTNSGK FFNLTVKEMVKDVLKGQNWLIYTYGVTNSG QNWLIYTYGVTNSGKTHTIQGTIKDGGILP K G Q G K T 0 0 2 0 0 1 0 3 0 1 1 1 0 0 0 1 2 1 2 1 0 0 16 0 1799.8842 O95235;D6RBN1 O95235 151 166 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 0.000981 65.295 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12937000 0 12937000 0 0 0 12937000 0 12937000 5352 1421 5483 14057 21935 21935 1 GQPLPDHLQMAVQGK HQLRAQIMAYKMLARGQPLPDHLQMAVQGK GQPLPDHLQMAVQGKRPMPGMQQQMPTLPP R G Q G K R 1 0 0 1 0 3 0 2 1 0 2 1 1 0 2 0 0 0 0 1 0 0 15 0 1617.8297 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;A5D6X0 A7E2E1 193 207 SMARCA4 Transcription activator BRG1 yes no 3 9.4417E-05 58.885 1 1.0548 1.0838 NaN 1 Median 1.0548 1.0838 NaN 1 0 Median NaN NaN NaN 0 0 Median 32218000 14132000 18087000 32218000 14132000 18087000 0 0 0 5353 695 5484 14058 21936;21937 21936 534 2 GQPLPETLQLAVQGK HQLRAQILAYKMLARGQPLPETLQLAVQGK GQPLPETLQLAVQGKRTLPGLQQQQQQQQQ R G Q G K R 1 0 0 0 0 3 1 2 0 0 3 1 0 0 2 0 1 0 0 1 0 0 15 0 1577.8777 P51531;A0A0U1RQZ9;F6VDE0;A0A0A0MT03;A0A1B0GWA8;A0A1B0GU54;Q56A76;Q6LC24 P51531 195 209 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.00067637 52.391 1 1 1.0147 0.93872 41.821 2 Median 0.65985 0.6984 NaN 1 0 Median 1.5605 1.2617 NaN 1 0 Median 19995000 11177000 8818100 15650000 9642000 6008400 4344300 1534600 2809700 5354 1595 5485 14059;14060 21938;21939 21939 2 GQPVSTAVSAPNTVSSTPGQK VQPGAPQQVMTQIIRGQPVSTAVSAPNTVS AVSAPNTVSSTPGQKSLTSATSTSNIQSSA R G Q Q K S 2 0 1 0 0 2 0 2 0 0 0 1 0 0 3 4 3 0 0 3 0 0 21 0 2012.0174 E7ETD6;Q12830;F5GXF5;J3QQK4 E7ETD6 2086 2106 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 1.4891E-07 63.037 2 0.79123 0.81336 11.574 2 Median 0.79123 0.81336 11.574 2 0 Median NaN NaN NaN 0 0 Median 30245000 15489000 14756000 30245000 15489000 14756000 0 0 0 5355 1224 5486 14061;14062 21940;21941;21942;21943;21944 21941 5 GQQSAEEENFK ______________________________ SQPRGQQSAEEENFKKPTRSNMQKNLEPAL R G Q F K K 1 0 1 0 0 2 3 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1265.5524 B3KWX6;Q53EY5;B3KX14;Q15014;Q5JXX6;Q5JXX1;Q5JXX2 B3KWX6 12 22 MORF4L2 Mortality factor 4-like protein 2 yes no 2 0.00015639 94.692 1 1.1312 1.1487 NaN 1 Median 1.1312 1.1487 NaN 1 0 Median NaN NaN NaN 0 0 Median 6190800 1891600 4299200 6190800 1891600 4299200 0 0 0 5356 950 5487 14063 21945;21946;21947 21947 3 GQSEDPGSLLSLFR FPDIPGAVSANMTVKGQSEDPGSLLSLFRR KGQSEDPGSLLSLFRRLSDQRSKERSLLHG K G Q F R R 0 1 0 1 0 1 1 2 0 0 3 0 0 1 1 3 0 0 0 0 0 0 14 0 1504.7522 B4E2Z3;F5GZS6;J3KPF3;P08195;F5GZI0 B4E2Z3 392 405 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 7.4152E-05 89.403 2 1 1.1849 1.1986 15.351 3 Median 1.162 1.1647 4.0502 2 0 Median 1.7864 1.5124 NaN 1 0 Median 18032000 7997300 10034000 14995000 6727000 8268100 3036600 1270300 1766300 5357 1072 5488 14064;14065;14066 21948;21949;21950;21951;21952;21953 21951 6 GQSLGYAFAEFQEHEHALK CRVMRDLKGVHGNMKGQSLGYAFAEFQEHE GYAFAEFQEHEHALKALRLINNNPEIFGPL K G Q L K A 3 0 0 0 0 2 3 2 2 0 2 1 0 2 0 1 0 0 1 0 0 0 19 0 2161.0229 A0A024R753;Q9NW13 A0A024R753 537 555 RBM28 RNA-binding protein 28 yes no 3 6.449E-06 61.276 2 1.2686 1.0059 6.9865 2 Median NaN NaN NaN 0 0 Median 1.2686 1.0059 6.9865 2 0 Median 26073000 10078000 15994000 0 0 0 26073000 10078000 15994000 5358 214 5489 14067;14068 21954;21955;21956 21956 3 GQSPAGDGSPEPPTPR RLLPTKNNVRSAWYRGQSPAGDGSPEPPTP QSPAGDGSPEPPTPRYNTWVLQDTVLESHL R G Q P R Y 1 1 0 1 0 1 1 3 0 0 0 0 0 0 5 2 1 0 0 0 0 0 16 0 1548.7168 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 281 296 NOL6 Nucleolar protein 6 yes no 2 1.7508E-08 102.73 3 2 1.2037 1.1794 3.9041 4 Median 1.0233 1.1505 2.6048 2 0 Median 1.4188 1.2139 3.1852 2 0 Median 198450000 94999000 103450000 144670000 72097000 72575000 53782000 22902000 30880000 5359 2038 5490 14069;14070;14071;14072;14073 21957;21958;21959;21960;21961;21962;21963 21961 7 GQTEHDEGMLEYLEDIIGCGR ILQGEVEQIAMMKPKGQTEHDEGMLEYLED EGMLEYLEDIIGCGRLNEPIKVLCRRVEIL K G Q G R L 0 1 0 2 1 1 4 4 1 2 2 0 1 0 0 0 1 0 1 0 0 0 21 0 2421.0577 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J578 Q9NTJ3 242 262 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 8.5414E-08 60.398 2 0.96364 1.0249 14.133 2 Median 0.96364 1.0249 14.133 2 0 Median NaN NaN NaN 0 0 Median 52924000 20895000 32029000 52924000 20895000 32029000 0 0 0 5360 2070 5491 14074;14075 21964;21965 21965 1901 1 GQTHTLEDFQR CAGIAVASKTYNLKKGQTHTLEDFQRVLDV NLKKGQTHTLEDFQRVLDVNLMGTFNVIRL K G Q Q R V 0 1 0 1 0 2 1 1 1 0 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1330.6266 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 106 116 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2;3 3.24E-05 87.298 4 1.5175 1.6396 NaN 1 Median 1.5175 1.6396 NaN 1 0 Median NaN NaN NaN 0 0 Median 26709000 10009000 16700000 26709000 10009000 16700000 0 0 0 5361 555 5492 14076;14077;14078;14079 21966;21967;21968;21969 21967 4 GQTSTYGFLK RFGVITEVDIKRPSRGQTSTYGFLKFENLD KRPSRGQTSTYGFLKFENLDMSHRAKLAMS R G Q L K F 0 0 0 0 0 1 0 2 0 0 1 1 0 1 0 1 2 0 1 0 0 0 10 0 1100.5502 A0A087WWP4;Q96T37 A0A087WWP4 367 376 RBM15 Putative RNA-binding protein 15 yes no 2 0.0041025 65.305 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5362 427 5493 14080;14081 21970;21971 21971 2 GQTTLPFRPVTQEEDDDQR SSKLIRILRMSDPERGQTTLPFRPVTQEED LPFRPVTQEEDDDQR_______________ R G Q Q R - 0 2 0 3 0 3 2 1 0 0 1 0 0 1 2 0 3 0 0 1 0 0 19 1 2231.0455 Q96SB8 Q96SB8 1073 1091 SMC6 Structural maintenance of chromosomes protein 6 yes yes 3 0.019514 30.152 1 1.4107 1.2692 NaN 1 Median NaN NaN NaN 0 0 Median 1.4107 1.2692 NaN 1 0 Median 2583400 1117300 1466100 0 0 0 2583400 1117300 1466100 5363 1989 5494 14082 21972 21972 0 GQVCVMIHSGSR IFNEYAAKKMGIDHKGQVCVMIHSGSRGLG DHKGQVCVMIHSGSRGLGHQVATDALVAME K G Q S R G 0 1 0 0 1 1 0 2 1 1 0 0 1 0 0 2 0 0 0 2 0 0 12 0 1329.6282 Q9Y3I0;B4DNA0 Q9Y3I0 252 263 RTCB tRNA-splicing ligase RtcB homolog yes no 2 8.1E-05 91.855 2 1.7483 1.7458 NaN 1 Median 1.7483 1.7458 NaN 1 0 Median NaN NaN NaN 0 0 Median 15175000 3717400 11457000 15175000 3717400 11457000 0 0 0 5364 2137 5495 14083;14084 21973;21974;21975 21974 1975 3 GQVEVFALR SWLGEEPVAGVWSEKGQVEVFALRRLLQVV GVWSEKGQVEVFALRRLLQVVEEPQALAAF K G Q L R R 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 1017.5607 Q8NCK5;Q9BQ67;Q8TCJ8;B2RDP6;M0QX71 Q8NCK5 173 181 GRWD1;DKFZp564C172 Glutamate-rich WD repeat-containing protein 1 yes no 2 0.013707 73.26 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35558000 35558000 0 35558000 35558000 0 0 0 0 5365 1922 5496 14085;14086 21976;21977 21977 2 GQVEYLLK EEYVVEKVLDRRVVKGQVEYLLKWKGFSEE LDRRVVKGQVEYLLKWKGFSEEHNTWEPEK K G Q L K W 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 8 0 948.52803 V9HWG0;P45973;Q6I9T7;F8VNY3 V9HWG0 33 40 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 0.0086589 77.674 2 1 0.66632 0.77736 73.376 3 Plateau 0.64144 0.74421 6.1628 2 0 Median 0.25663 0.20927 NaN 1 0 Median 508730000 299970000 208770000 482850000 279620000 203230000 25885000 20343000 5541900 5366 1568 5497 14087;14088;14089 21978;21979;21980;21981 21979 4 GQVGGDVNVEMDAAPGVDLSR AYLKKNHEEEMNALRGQVGGDVNVEMDAAP VNVEMDAAPGVDLSRILNEMRDQYEKMAEK R G Q S R I 2 1 1 3 0 1 1 4 0 0 1 0 1 0 1 1 0 0 0 4 0 0 21 0 2084.9797 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2 CON__P02533 262 282 KRT14 Keratin, type I cytoskeletal 14 yes no 2 3.8589E-13 87.566 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53865000 53865000 0 53865000 53865000 0 0 0 0 + 5367 1150 5498;5499 14090;14091;14092;14093 21982;21983;21984;21985 21983 856 4 GQVLSTINTNQMNNTHAAVSPCGR MTASSDTTVLIWSLKGQVLSTINTNQMNNT NQMNNTHAAVSPCGRFVASCGFTPDVKVWE K G Q G R F 2 1 4 0 1 2 0 2 1 1 1 0 1 0 1 2 3 0 0 2 0 0 24 0 2569.2126 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;B4DY59;A0A0S2Z5C1 E9PF19 183 206 TBL2 Transducin beta-like protein 2 yes no 3 3.7453E-12 66.871 2 1.0872 1.101 8.122 2 Median 1.0872 1.101 8.122 2 0 Median NaN NaN NaN 0 0 Median 37997000 24231000 13766000 37997000 24231000 13766000 0 0 0 5368 582 5500 14094;14095 21986;21987;21988 21987 435 2 GQVSEMAVLLIDPEPQIAALAK LVMTHLILKDMVKVKGQVSEMAVLLIDPEP VLLIDPEPQIAALAKNFFNELSHKGNAIYN K G Q A K N 4 0 0 1 0 2 2 1 0 2 3 1 1 0 2 1 0 0 0 2 0 0 22 0 2292.2399 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1129 1150 NCAPD2 Condensin complex subunit 1 yes no 2 1.5181E-16 110.44 2 1.304 1.4374 3.3421 2 Median 1.304 1.4374 3.3421 2 0 Median NaN NaN NaN 0 0 Median 100600000 44633000 55965000 100600000 44633000 55965000 0 0 0 5369 908 5501 14096;14097 21989;21990;21991;21992 21991 739 4 GQVSESEDSITK PPKLRRRTFSLTEVRGQVSESEDSITKQIE EVRGQVSESEDSITKQIESLETEMEFRSAQ R G Q T K Q 0 0 0 1 0 1 2 1 0 1 0 1 0 0 0 3 1 0 0 1 0 0 12 0 1278.5939 Q59HG1;O95239;B3KNC0 Q59HG1 810 821 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 1.3299E-12 129.16 2 2 1.2246 1.1455 9.4044 4 Median 0.94375 1.0593 3.4972 2 0 Median 1.551 1.2375 3.3553 2 0 Median 187180000 89808000 97375000 164070000 80966000 83108000 23110000 8842400 14267000 5370 1803 5502 14098;14099;14100;14101 21993;21994;21995;21996;21997;21998;21999 21993 7 GQVTFLSIHPSGK DAKKWECLKSIKAHKGQVTFLSIHPSGKLA HKGQVTFLSIHPSGKLALSVGTDKTLRTWN K G Q G K L 0 0 0 0 0 1 0 2 1 1 1 1 0 1 1 2 1 0 0 1 0 0 13 0 1369.7354 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 124 136 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2;3 3.8425E-06 107.85 4 4 1.3051 1.1399 12.064 8 Median 1.0464 1.1719 13.689 4 0 Median 1.3396 1.0857 6.8464 4 0 Median 389640000 178540000 211100000 309610000 144550000 165060000 80022000 33983000 46038000 5371 580 5503 14102;14103;14104;14105;14106;14107;14108;14109 22000;22001;22002;22003;22004;22005;22006;22007;22008;22009;22010;22011;22012;22013;22014 22004 15 GQVVENNSVTEFSEEK SFEMTEFNQALEEIKGQVVENNSVTEFSEE QVVENNSVTEFSEEKNRTENYNRQDGQRVQ K G Q E K N 0 0 2 0 0 1 4 1 0 0 0 1 0 1 0 2 1 0 0 3 0 0 16 0 1794.8272 Q9BVS4;H0Y919;Q9NVB0 Q9BVS4 405 420 RIOK2 Serine/threonine-protein kinase RIO2 yes no 2 0.0035732 55.899 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3554600 0 3554600 3554600 0 3554600 0 0 0 5372 2010 5504 14110 22015 22015 1 GQWINLPVLQLTK LVTGSSYESPPPDFRGQWINLPVLQLTKDP FRGQWINLPVLQLTKDPLKTPGRLDHGTRT R G Q T K D 0 0 1 0 0 2 0 1 0 1 3 1 0 0 1 0 1 1 0 1 0 0 13 0 1508.8715 B4DDU7;Q53HS1;Q9NRG9;F8VUB6 B4DDU7 40 52 AAAS Aladin yes no 2 0.00016902 72.006 2 1.7442 1.8019 13.719 2 Median 1.7442 1.8019 13.719 2 0 Median NaN NaN NaN 0 0 Median 8929000 3233100 5695900 8929000 3233100 5695900 0 0 0 5373 961 5505 14111;14112 22016;22017 22017 2 GQYISPFHDIPIYADK APFSLEYRVFLKNEKGQYISPFHDIPIYAD QYISPFHDIPIYADKDVFHMVVEVPRWSNA K G Q D K D 1 0 0 2 0 1 0 1 1 3 0 1 0 1 2 1 0 0 2 0 0 0 16 0 1862.9203 V9HWB5;Q15181;Q5SQT6 V9HWB5 26 41 HEL-S-66p;PPA1 Inorganic pyrophosphatase yes no 3 0.007226 40.493 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8361600 0 8361600 8361600 0 8361600 0 0 0 5374 1755 5506 14113 22018 22018 1 GRAPQVLVLAPTR PLIEKLHGELQDRKRGRAPQVLVLAPTREL KRGRAPQVLVLAPTRELANQVSKDFSDITK R G R T R E 2 2 0 0 0 1 0 1 0 0 2 0 0 0 2 0 1 0 0 2 0 0 13 1 1376.8252 Q9NR30 Q9NR30 258 270 DDX21 Nucleolar RNA helicase 2 yes yes 3 0.00051028 59.185 2 1.0883 0.95856 0.37592 2 Median NaN NaN NaN 0 0 Median 1.0883 0.95856 0.37592 2 0 Median 10315000 4424000 5890800 0 0 0 10315000 4424000 5890800 5375 2065 5507 14114;14115 22019;22020 22020 2 GRDDCGTFEDTGPLLQFDYK LGKNHSRKDGLSDERGRDDCGTFEDTGPLL GTFEDTGPLLQFDYKAVADRLLEMTSRKNT R G R Y K A 0 1 0 4 1 1 1 3 0 0 2 1 0 2 1 0 2 0 1 0 0 0 20 1 2333.027 Q14684;Q6PJM8 Q14684 282 301 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 3 9.5364E-07 69.779 1 2 1.685 1.4257 14.291 3 Median 1.0063 1.1476 NaN 1 0 Median 1.7125 1.4637 3.7198 2 0 Median 45116000 19555000 25561000 20218000 10353000 9865100 24898000 9202100 15696000 5376 1740 5508 14116;14117;14118 22021;22022;22023;22024;22025;22026 22026 5 GRDLEQILSQYITFVK DTRLSRRVLRDISERGRDLEQILSQYITFV RDLEQILSQYITFVKPAFEEFCLPTKKYAD R G R V K P 0 1 0 1 0 2 1 1 0 2 2 1 0 1 0 1 1 0 1 1 0 0 16 1 1909.0309 A0A024R912;Q9BZX2 A0A024R912 175 190 UCK2 Uridine kinase;Uridine-cytidine kinase 2 yes no 3 2.3066E-12 115.31 1 2.3438 2.6493 NaN 1 Median 2.3438 2.6493 NaN 1 0 Median NaN NaN NaN 0 0 Median 15495000 4195700 11299000 15495000 4195700 11299000 0 0 0 5377 268 5509 14119 22027 22027 1 GRDPALPTLLNPK HQSQAGPLPLSYRWRGRDPALPTLLNPKTL WRGRDPALPTLLNPKTLPSGLDDYPRASHP R G R P K T 1 1 1 1 0 0 0 1 0 0 3 1 0 0 3 0 1 0 0 0 0 0 13 1 1390.7932 Q58F09;Q13724;A8K9K4;C9J8D4 Q58F09 564 576 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 3 0.0091244 35.809 1 0.87215 0.97815 NaN 1 Median 0.87215 0.97815 NaN 1 0 Median NaN NaN NaN 0 0 Median 6612000 3678300 2933700 6612000 3678300 2933700 0 0 0 5378 1720 5510 14120 22028 22028 1 GRDVESVQTPSK EPASPEQELDQNKGKGRDVESVQTPSKAVG KGKGRDVESVQTPSKAVGASFPLYEPAKMK K G R S K A 0 1 0 1 0 1 1 1 0 0 0 1 0 0 1 2 1 0 0 2 0 0 12 1 1301.6575 P46013 P46013 320 331 MKI67 Antigen KI-67 yes yes 2 2.8232E-07 113.61 2 1.728 2.0217 2.3578 2 Median 1.728 2.0217 2.3578 2 0 Median NaN NaN NaN 0 0 Median 72208000 25293000 46915000 72208000 25293000 46915000 0 0 0 5379 1569 5511 14121;14122 22029;22030;22031;22032 22032 4 GRDVIAQSQSGTGK KPSAIQQRAIKQIIKGRDVIAQSQSGTGKT KGRDVIAQSQSGTGKTATFSISVLQCLDIQ K G R G K T 1 1 0 1 0 2 0 3 0 1 0 1 0 0 0 2 1 0 0 1 0 0 14 1 1402.7165 A0A024R8W0;P38919;I3L3H2 A0A024R8W0 75 88 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2;3 7.3687E-37 167.32 3 2.1658 2.4956 19.937 3 Median 2.1658 2.4956 19.937 3 0 Median NaN NaN NaN 0 0 Median 41678000 12388000 29290000 41678000 12388000 29290000 0 0 0 5380 261 5512 14123;14124;14125 22033;22034;22035;22036;22037 22033 5 GRGGGGGGGGGGGGRERDRR SRSRSRERRSRSRDRGRGGGGGGGGGGGGR GGGGGGGGGRERDRRRSRDRERSGRF____ R G R R R R 0 5 0 1 0 0 1 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 4 1783.8647 P0DN76;Q01081;Q7Z780;B5BU08 P0DN76 210 229 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 3 0.054658 7.6978 1 0.46778 0.57625 NaN 1 Median NaN NaN NaN 0 0 Median 0.46778 0.57625 NaN 1 0 Median 1877400 1077900 799560 0 0 0 1877400 1077900 799560 5381 1463 5513 14126 22038 22038 1 GRGVTFLFPIQAK FSNFPISEETIKLLKGRGVTFLFPIQAKTF LKGRGVTFLFPIQAKTFHHVYSGKDLIAQA K G R A K T 1 1 0 0 0 1 0 2 0 1 1 1 0 2 1 0 1 0 0 1 0 0 13 1 1432.8191 Q9NR30 Q9NR30 203 215 DDX21 Nucleolar RNA helicase 2 yes yes 3 0.033537 18.731 1 1.9797 1.7652 NaN 1 Median NaN NaN NaN 0 0 Median 1.9797 1.7652 NaN 1 0 Median 2154500 926150 1228400 0 0 0 2154500 926150 1228400 5382 2065 5514 14127 22039 22039 1 GRHEVGALVR KELKLVFPGAQRMNRGRHEVGALVRACKAN QRMNRGRHEVGALVRACKANGVTDLLVVHE R G R V R A 1 2 0 0 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 2 0 0 10 1 1092.6152 H0Y714;Q96G21;B8ZZ47;E7ENR5;B9A008 H0Y714 106 115 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 3 0.013117 34.773 1 0.81646 0.84337 NaN 1 Median 0.81646 0.84337 NaN 1 0 Median NaN NaN NaN 0 0 Median 12513000 7191000 5321500 12513000 7191000 5321500 0 0 0 5383 1286 5515 14128 22040 22040 1 GRIPLLLTSLSFK VVKKWLEVEIAPDIRGRIPLLLTSLSFKVL IRGRIPLLLTSLSFKVLKHPDKKFRVGQAL R G R F K V 0 1 0 0 0 0 0 1 0 1 4 1 0 1 1 2 1 0 0 0 0 0 13 1 1443.8813 Q14690 Q14690 1176 1188 PDCD11 Protein RRP5 homolog yes yes 2;3 0.0011427 85.813 1 3 1.2858 1.1311 7.266 4 Median 0.97067 1.1026 NaN 1 0 Median 1.3697 1.1603 8.8566 3 0 Median 46571000 20394000 26176000 18041000 7937300 10104000 28529000 12457000 16072000 5384 1741 5516 14129;14130;14131;14132 22041;22042;22043;22044;22045;22046 22042 6 GRPDPYAYIPLNR AEYKAKKAKGDVKKKGRPDPYAYIPLNRSK KKGRPDPYAYIPLNRSKLNRRKKMKLQGQF K G R N R S 1 2 1 1 0 0 0 1 0 1 1 0 0 0 3 0 0 0 2 0 0 0 13 1 1530.7943 B3KMR5;Q5JTH9;B3KY97;B3KPQ2 B3KMR5 1246 1258 RRP12 RRP12-like protein yes no 3 0.0024152 40.477 2 1.076 0.94533 4.5722 2 Median NaN NaN NaN 0 0 Median 1.076 0.94533 4.5722 2 0 Median 14277000 6434300 7842500 0 0 0 14277000 6434300 7842500 5385 907 5517 14133;14134 22047;22048;22049;22050 22047 4 GRPGSGTSGVDSLSNFIESVK MQKTIEMKRTDRVGRGRPGSGTSGVDSLSN TSGVDSLSNFIESVKEEASNSGYGSSINQD R G R V K E 0 1 1 1 0 0 1 4 0 1 1 1 0 1 1 5 1 0 0 2 0 0 21 1 2093.0389 B9ZVT1;Q8IXT5;E5RHG1;E5RJ83;E5RJV8 B9ZVT1 94 114 RBM12B RNA-binding protein 12B yes no 3 1.4534E-15 100.28 2 1 1.0806 1.2053 17.172 3 Plateau 1.081 1.2036 0.20151 2 0 Median 1.0806 0.89397 NaN 1 0 Median 44977000 23222000 21755000 39407000 21015000 18391000 5569900 2206800 3363200 5386 1122 5518 14135;14136;14137 22051;22052;22053;22054 22053 4 GRPISHSTTEDLK FHDKKFKLNYAVDKRGRPISHSTTEDLKRF KRGRPISHSTTEDLKRFYDLSDSDSNLSGE R G R L K R 0 1 0 1 0 0 1 1 1 1 1 1 0 0 1 2 2 0 0 0 0 0 13 1 1439.7369 Q9H501;Q05C10;Q8IWH6;Q3SWV1;Q6P6H6 Q9H501 57 69 ESF1 ESF1 homolog yes no 3 0.0018267 42.785 1 0.78942 0.87434 NaN 1 Median 0.78942 0.87434 NaN 1 0 Median NaN NaN NaN 0 0 Median 8278700 4466700 3811900 8278700 4466700 3811900 0 0 0 5387 2033 5519 14138 22055 22055 1 GRPYSVPPCVEEALGQK SLDPFDSLESKPFKKGRPYSVPPCVEEALG PYSVPPCVEEALGQKRKRKGAAKLQDFHQW K G R Q K R 1 1 0 0 1 1 2 2 0 0 1 1 0 0 3 1 0 0 1 2 0 0 17 1 1885.9356 A0A0A6YYG7;Q6IBW4 A0A0A6YYG7 334 350 NCAPH2 Condensin-2 complex subunit H2 yes no 3 0.00062011 41.513 1 1 1.1931 1.1774 63.265 2 Median 0.64351 0.75273 NaN 1 0 Median 2.212 1.8416 NaN 1 0 Median 38125000 17777000 20348000 31996000 15782000 16214000 6128700 1994600 4134100 5388 491 5520 14139;14140 22056;22057 22056 2 GRPYTLSVALPGSILDNAQSPELR KRLEEEEAAAEKEDRGRPYTLSVALPGSIL LPGSILDNAQSPELRTYLAGQIARACAIFC R G R L R T 2 2 1 1 0 1 1 2 0 1 4 0 0 0 3 3 1 0 1 1 0 0 24 1 2553.3551 Q5T280 Q5T280 70 93 C9orf114 Putative methyltransferase C9orf114 yes yes 3 8.1713E-06 45.735 1 2 0.81857 0.71951 24.326 2 Median NaN NaN NaN 0 0 Median 0.81857 0.71951 24.326 2 0 Median 41050000 23565000 17485000 5353300 5353300 0 35696000 18212000 17485000 5389 1819 5521 14141;14142;14143 22058;22059;22060;22061;22062 22060 5 GRRPVLPR EGVPDEEGWVKVTRRGRRPVLPRTEAASLR WVKVTRRGRRPVLPRTEAASLRVLERERRK R G R P R T 0 3 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 8 2 949.59337 Q9Y3A4;Q9NSQ0 Q9Y3A4 210 217 RRP7A;RRP7BP Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 3 0.034022 42.109 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2473200 2473200 0 2473200 2473200 0 0 0 0 5390 2133 5522 14144 22063 22063 1 GSAFAALHR SLLRTAKDCRHTVWKGSAFAALHRGRPPEM RHTVWKGSAFAALHRGRPPEMPVNYGSPPN K G S H R G 3 1 0 0 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 0 0 0 9 0 928.4879 Q9NSI6 Q9NSI6 125 133 BRWD1 Bromodomain and WD repeat-containing protein 1 yes yes 2 0.04842 47.082 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5391 2068 5523 14145 22064 22064 1 GSAFAIGSDGLCCQSR AFSVLNKWQMNPYDRGSAFAIGSDGLCCQS SAFAIGSDGLCCQSREVKEWHGCRATKGLM R G S S R E 2 1 0 1 2 1 0 3 0 1 1 0 0 1 0 3 0 0 0 0 0 0 16 0 1684.7297 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 18 33 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 6.9695E-07 97.911 2 2 1.5538 1.3507 13.127 4 Median 1.4013 1.4316 18.638 2 0 Median 1.5553 1.3421 11.308 2 0 Median 37187000 14803000 22385000 28648000 11313000 17335000 8539300 3489500 5049800 5392 452 5524 14146;14147;14148;14149 22065;22066;22067;22068;22069;22070;22071;22072;22073;22074 22065 10 GSAGDGFHGDVYLTVK SYNTKTQIIQDFLRKGSAGDGFHGDVYLTV SAGDGFHGDVYLTVKLLLPGVIKTVYNLND K G S V K L 1 0 0 2 0 0 0 4 1 0 1 1 0 1 0 1 1 0 1 2 0 0 16 0 1621.7736 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 293 308 LIG3 DNA ligase 3;DNA ligase yes no 2 0.0070326 49.448 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5393 1589 5525 14150 22075 22075 1 GSAITGPVAK EDNAGVIVNNKGEMKGSAITGPVAKECADL KGEMKGSAITGPVAKECADLWPRIASNAGS K G S A K E 2 0 0 0 0 0 0 2 0 1 0 1 0 0 1 1 1 0 0 1 0 0 10 0 899.50763 Q9BTQ7;A0A024R1Q8;P62829;J3KTJ3 Q9BTQ7 108 117 RPL23 60S ribosomal protein L23 yes no 2 3.5718E-05 99.442 2 2 1.1225 1.1395 30.375 4 Median 0.73253 0.87163 1.8477 2 0 Median 1.7198 1.4746 0.40183 2 0 Median 2067400000 1155100000 912230000 1876500000 1084300000 792210000 190880000 70859000 120020000 5394 84 5526 14151;14152;14153;14154 22076;22077;22078;22079;22080;22081;22082;22083;22084 22079 9 GSALAALHCGRPPESPVNYGSPPSIADTLFSR SLLRTNKSCKHVVWKGSALAALHCGRPPES NYGSPPSIADTLFSRKLNGKYRLERLVPTA K G S S R K 4 2 1 1 1 0 1 3 1 1 3 0 0 1 5 5 1 0 1 1 0 0 32 1 3323.6357 Q8WWQ0 Q8WWQ0 122 153 PHIP PH-interacting protein yes yes 3 2.0397E-07 37.461 1 1.0811 0.89922 NaN 1 Median NaN NaN NaN 0 0 Median 1.0811 0.89922 NaN 1 0 Median 18055000 9883500 8171200 0 0 0 18055000 9883500 8171200 5395 1942 5527 14155 22085 22085 1 GSATNYITR ______________________________ KKKYERGSATNYITRNKARKKLQLSLADFR R G S T R N 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 1 2 0 1 0 0 0 9 0 981.48796 B5MCF9;B2RDF2;O00541 B5MCF9 12 20 PES1 Pescadillo homolog yes no 2 2.3184E-11 135 3 2 1.0713 0.89128 NaN 1 Median NaN NaN NaN 0 0 Median 1.0713 0.89128 NaN 1 0 Median 155970000 10797000 145170000 134100000 0 134100000 21866000 10797000 11070000 5396 886 5528 14156;14157;14158;14159;14160 22086;22087;22088;22089;22090;22091 22087 6 GSAVHQLSEELR PDPDTGLYMLQLAGRGSAVHQLSEELRCAL AGRGSAVHQLSEELRCALRDARVTPGSGAL R G S L R C 1 1 0 0 0 1 2 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1324.6735 A0A075B730;A0A087X1U6;P58107 A0A075B730 2396 2407 EPPK1 Epiplakin no no 2;3 5.0085E-06 118.28 4 3 2.0483 2.0226 31.369 7 Median 2.1564 2.424 42.187 4 0 Median 2.0483 1.8109 12.264 3 0 Median 331010000 119660000 211350000 319280000 116450000 202830000 11731000 3207700 8523800 5397 397;1622 5529 14161;14162;14163;14164;14165;14166;14167 22092;22093;22094;22095;22096;22097;22098 22094 7 GSAYLEAGGTK LRPVYARAGLLSQAKGSAYLEAGGTKVLCA SQAKGSAYLEAGGTKVLCAVSGPRQAEGGE K G S T K V 2 0 0 0 0 0 1 3 0 0 1 1 0 0 0 1 1 0 1 0 0 0 11 0 1052.5138 Q5RKV6 Q5RKV6 51 61 EXOSC6 Exosome complex component MTR3 yes yes 2 0.0012626 68.847 2 0.96315 1.0003 38.178 2 Median 0.96315 1.0003 38.178 2 0 Median NaN NaN NaN 0 0 Median 39974000 21016000 18958000 39974000 21016000 18958000 0 0 0 5398 1814 5530 14168;14169 22099;22100 22100 2 GSCGIGGGIGGGSSR MTTCSRQFTSSSSMKGSCGIGGGIGGGSSR GSCGIGGGIGGGSSRISSVLAGGSCRAPST K G S S R I 0 1 0 0 1 0 0 8 0 2 0 0 0 0 0 3 0 0 0 0 0 0 15 0 1277.5782 CON__P02533;P02533;K7ENV3;CON__P08779;P08779 CON__P02533 16 30 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 5.4573E-05 81.918 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 134690000 134690000 0 122650000 122650000 0 12041000 12041000 0 + 5399 1150;1159 5531 14170;14171;14172 22101;22102;22103 22102 3 GSDFDCELR LKKIIPTLEEYQHYKGSDFDCELRLLIHQS EYQHYKGSDFDCELRLLIHQSLAGGIIGVK K G S L R L 0 1 0 2 1 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1097.4448 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2 B4DUQ1 116 124 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 0.0018009 80.684 2 2 1.3271 1.304 36.797 4 Median 1.5926 1.7682 0.44362 2 0 Median 1.0998 0.93619 4.2294 2 0 Median 129460000 48331000 81131000 118220000 43080000 75141000 11242000 5251200 5990700 5400 102 5532 14173;14174;14175;14176 22104;22105;22106;22107;22108;22109;22110 22104 7 GSDSEDGEFEIQAEDDAR KKGLRKRRGAASQARGSDSEDGEFEIQAED SEDGEFEIQAEDDARARKLGPGRPLPTFPT R G S A R A 2 1 0 4 0 1 4 2 0 1 0 0 0 1 0 2 0 0 0 0 0 0 18 0 1968.7821 Q8TDD1;H0YHZ9 Q8TDD1 38 55 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 1.0686E-05 79.466 2 2 1.3125 1.302 9.5996 2 Median 1.3125 1.302 9.5996 2 0 Median NaN NaN NaN 0 0 Median 33969000 16860000 17109000 31278000 14169000 17109000 2691400 2691400 0 5401 1933 5533 14177;14178;14179;14180 22111;22112;22113;22114;22115;22116;22117 22114 7 GSDVASAQLPNFR PFQDGYDLTIGTSERGSDVASAQLPNFRHA ERGSDVASAQLPNFRHALVVFGGLQGLEAG R G S F R H 2 1 1 1 0 1 0 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 13 0 1360.6735 Q5T280;R4GNG4 Q5T280 293 305 C9orf114 Putative methyltransferase C9orf114 yes no 2 0.00012105 77.192 2 1 0.98078 0.9753 9.4384 3 Plateau 0.96526 0.97287 5.0089 2 0 Median 0.98078 0.83607 NaN 1 0 Median 31667000 14087000 17580000 28744000 12632000 16112000 2923600 1455700 1467900 5402 1819 5534 14181;14182;14183 22118;22119;22120;22121;22122;22123 22120 6 GSEASSEAGVVTTR RIGLRVHFNLPEDDKGSEASSEAGVVTTRQ KGSEASSEAGVVTTRQTRPDSFQERFNGQA K G S T R Q 2 1 0 0 0 0 2 2 0 0 0 0 0 0 0 3 2 0 0 2 0 0 14 0 1349.6423 A0A087WX60;Q86TC9;A5PKT7 A0A087WX60 314 327 MYPN Myopalladin yes no 2 1.7652E-10 117.09 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9821100 0 9821100 9821100 0 9821100 0 0 0 5403 429 5535 14184;14185;14186 22124;22125;22126 22124 3 GSEFMFEK KIRKAAQHGVCSVLKGSEFMFEKAPAHHPA GVCSVLKGSEFMFEKAPAHHPAAISTAKFC K G S E K A 0 0 0 0 0 0 2 1 0 0 0 1 1 2 0 1 0 0 0 0 0 0 8 0 973.42152 B3KMR5;Q5JTH9 B3KMR5 266 273 RRP12 RRP12-like protein yes no 2 0.029115 40.067 1 1.773 1.7707 NaN 1 Median 1.773 1.7707 NaN 1 0 Median NaN NaN NaN 0 0 Median 15121000 4354300 10767000 15121000 4354300 10767000 0 0 0 5404 907 5536 14187 22127 22127 732 1 GSEGKPSLTLPASAPGPEEALTTVTVAPAPR PRFRRLKQERENAARGSEGKPSLTLPASAP PEEALTTVTVAPAPRRAAAKSPDLSNQNSD R G S P R R 5 1 0 0 0 0 3 3 0 0 3 1 0 0 6 3 4 0 0 2 0 0 31 1 3000.5768 P48634;B4DLY2 P48634 1270 1300 PRRC2A Protein PRRC2A yes no 3 0.037988 14.053 1 3.9149 3.2412 NaN 1 Median NaN NaN NaN 0 0 Median 3.9149 3.2412 NaN 1 0 Median 5631700 906700 4725000 0 0 0 5631700 906700 4725000 5405 1576 5537 14188 22128 22128 1 GSEHQAIVQHLEK LHQDLVNRKARKLRKGSEHQAIVQHLEKSF RKGSEHQAIVQHLEKSFAIASLVETGHLAA K G S E K S 1 0 0 0 0 2 2 1 2 1 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1474.7528 Q14690;B4DH82 Q14690 925 937 PDCD11 Protein RRP5 homolog yes no 2;3 3.7589E-06 82.109 4 2 1.1357 1.0713 3.6762 4 Median 0.98719 1.0713 1.9733 2 0 Median 1.3027 1.0521 5.776 2 0 Median 193660000 90976000 102680000 178330000 84702000 93630000 15327000 6274100 9052900 5406 1741 5538 14189;14190;14191;14192;14193;14194 22129;22130;22131;22132;22133;22134;22135 22131 6 GSEIQSSSALYPVGR EKENKRESRKEKRKKGSEIQSSSALYPVGR GSEIQSSSALYPVGRVSKEKVVGEDVATSS K G S G R V 1 1 0 0 0 1 1 2 0 1 1 0 0 0 1 4 0 0 1 1 0 0 15 0 1549.7736 Q03164;E9PR05 Q03164 896 910 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 1.0033E-10 122.7 2 2 1.285 1.1909 37.698 4 Median 0.86943 0.872 2.2677 2 0 Median 1.9611 1.67 6.005 2 0 Median 43152000 20335000 22817000 32116000 16644000 15472000 11037000 3691300 7345200 5407 1680 5539 14195;14196;14197;14198 22136;22137;22138;22139;22140;22141;22142;22143;22144 22136 9 GSELEITLTR SPSDKVLIQEKTQLKGSELEITLTRGSSLP KTQLKGSELEITLTRGSSLPGPACAYVNLN K G S T R G 0 1 0 0 0 0 2 1 0 1 2 0 0 0 0 1 2 0 0 0 0 0 10 0 1117.5979 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2;Q7L4K8;Q9P1N9;Q5TCC6 Q59G75 1079 1088 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.049695 44.392 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5408 1561 5540 14199 22145 22145 1 GSELQLPFQACLK PLEVHLLDFPNIVIKGSELQLPFQACLKVE IKGSELQLPFQACLKVEKFGDLILKATEPQ K G S L K V 1 0 0 0 1 2 1 1 0 0 3 1 0 1 1 1 0 0 0 0 0 0 13 0 1489.7599 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1886 1898 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 2.3327E-10 109.66 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5409 1854 5541 14200 22146 22146 1 GSETGSETHESDLAPSDK EGSEYEEIPKRRRQRGSETGSETHESDLAP TGSETHESDLAPSDKEAPTPKEGTLTQVPL R G S D K E 1 0 0 2 0 0 3 2 1 0 1 1 0 0 1 4 2 0 0 0 0 0 18 0 1845.7864 P48634;B4DLY2 P48634 1105 1122 PRRC2A Protein PRRC2A yes no 3 1.0606E-05 63.46 1 1 2.2325 2.0522 16.994 2 Median 1.806 1.8198 NaN 1 0 Median 2.7597 2.3142 NaN 1 0 Median 8757400 3727300 5030100 7395000 3287000 4108000 1362400 440280 922160 5410 1576 5542 14201;14202 22147;22148;22149 22147 3 GSEVTAPVASDSSYR PLEKLGPCLPLDLSRGSEVTAPVASDSSYR GSEVTAPVASDSSYRNECPRAEKEDTQMLP R G S Y R N 2 1 0 1 0 0 1 1 0 0 0 0 0 0 1 4 1 0 1 2 0 0 15 0 1524.7056 A0A0A0MQS0;F8W9L8;A0A024R9G8;A0A0A8K9A6;A8MW92 A0A0A0MQS0 454 468 PHF20L1;URLC1 PHD finger protein 20-like protein 1 yes no 2 0.0070578 51.092 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5411 461 5543 14203 22150 22150 1 GSFAPGHGPR RSLLPPQRPRSGGARGSFAPGHGPRAGASP SGGARGSFAPGHGPRAGASPPPVSELDRAD R G S P R A 1 1 0 0 0 0 0 3 1 0 0 0 0 1 2 1 0 0 0 0 0 0 10 0 981.47806 Q9NX00 Q9NX00 35 44 TMEM160 Transmembrane protein 160 yes yes 3 0.039972 26.043 1 0.95474 1.0105 NaN 1 Median 0.95474 1.0105 NaN 1 0 Median NaN NaN NaN 0 0 Median 3913800 2227900 1685900 3913800 2227900 1685900 0 0 0 5412 2076 5544 14204 22151 22151 1 GSFEGTSQNLPK NKRPLPATSWEDMKKGSFEGTSQNLPKRKQ MKKGSFEGTSQNLPKRKQLEANRLSLKNDA K G S P K R 0 0 1 0 0 1 1 2 0 0 1 1 0 1 1 2 1 0 0 0 0 0 12 0 1263.6095 A0A024RAL5;Q8N567 A0A024RAL5 27 38 ZCCHC9 Zinc finger CCHC domain-containing protein 9 yes no 2 0.00018073 74.841 1 2 1.4353 1.1141 8.2906 3 Median 0.97616 0.99333 NaN 1 0 Median 1.4464 1.1402 3.2706 2 0 Median 35609000 14579000 21030000 27985000 11512000 16473000 7624300 3066400 4557900 5413 308 5545 14205;14206;14207 22152;22153;22154;22155 22152 4 GSFSDTGLGDGK EQKQTNTDKEKIKEKGSFSDTGLGDGKMKS KEKGSFSDTGLGDGKMKSDSFAPKTDSEKP K G S G K M 0 0 0 2 0 0 0 4 0 0 1 1 0 1 0 2 1 0 0 0 0 0 12 0 1139.5095 Q9Y2W1 Q9Y2W1 376 387 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 1.1073E-05 107.55 2 2 1.0558 1.002 1.8938 4 Median 0.88981 0.9995 2.088 2 0 Median 1.2468 1.0069 2.4184 2 0 Median 201100000 107800000 93295000 185760000 100320000 85438000 15340000 7483500 7856700 5414 2128 5546 14208;14209;14210;14211 22156;22157;22158;22159;22160;22161;22162 22158 7 GSGAGVGTTLTPLPPPK PPDCPVGGPLTFPGRGSGAGVGTTLTPLPP GAGVGTTLTPLPPPKMPPPTILSTVPRQMF R G S P K M 1 0 0 0 0 0 0 4 0 0 2 1 0 0 4 1 3 0 0 1 0 0 17 0 1548.8512 Q8NBZ0;J3KNE2;H3BNM4;Q8TET7 Q8NBZ0 191 207 INO80E;FLJ00079 INO80 complex subunit E yes no 2 4.4997E-25 140.91 2 1 0.93376 0.84047 7.3931 2 Median 0.77181 0.79766 NaN 1 0 Median 1.1297 0.88557 NaN 1 0 Median 39414000 15808000 23606000 35630000 13989000 21641000 3784200 1818600 1965500 5415 1921 5547 14212;14213;14214 22163;22164;22165;22166 22165 4 GSGGLGGACGGAGFGSR VSRSGFSSISVSRSRGSGGLGGACGGAGFG GGLGGACGGAGFGSRSLYGLGGSKRISIGG R G S S R S 2 1 0 0 1 0 0 9 0 0 1 0 0 1 0 2 0 0 0 0 0 0 17 0 1423.6263 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;A0A0S2Z427;CON__P04259;B4DKV4 B2R853 43 59 KRT6C;KRT6A Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 2.8933E-09 100.73 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 153780000 153780000 0 143250000 143250000 0 10527000 10527000 0 + 5416 859;1154 5548 14215;14216;14217 22167;22168;22169 22167 3 GSGQGDSLYPVGYLDK ELSGPGGGSRGRSDRGSGQGDSLYPVGYLD SGQGDSLYPVGYLDKQVPDTSVQETDRILV R G S D K Q 0 0 0 2 0 1 0 4 0 0 2 1 0 0 1 2 0 0 2 1 0 0 16 0 1654.7839 S4R329;H0YK61;H0YNK0;H0YNK8;A0A0S2Z598;A0A024R9N3;Q5J8M3;H0YLP8 S4R329 35 50 EMC4;TMEM85 ER membrane protein complex subunit 4 yes no 2 0.00081729 60.628 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5417 283 5549 14218 22170 22170 1 GSGSGQSPSSGQHGTGFGR QHSSGSGQSPGHGQRGSGSGQSPSSGQHGT GQSPSSGQHGTGFGRSSSSGPYVSGSGYSS R G S G R S 0 1 0 0 0 2 0 7 1 0 0 0 0 1 1 5 1 0 0 0 0 0 19 0 1746.767 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 430 448 HRNR Hornerin yes no 2;3 0.00091902 53.377 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7590400 7590400 0 6409700 6409700 0 1180700 1180700 0 + 5418 1179 5550 14219;14220;14221 22171;22172;22173 22171 3 GSGSQSSVPSVDQFTGVGIR SQSQDEGEGSGESERGSGSQSSVPSVDQFT SSVPSVDQFTGVGIRVSFTGKQGEMREMQQ R G S I R V 0 1 0 1 0 2 0 4 0 1 0 0 0 1 1 5 1 0 0 3 0 0 20 0 1963.9599 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 1080 1099 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 2.4255E-06 67.136 2 2 0.88368 0.83738 6.1152 4 Median 0.78671 0.8359 4.2511 2 0 Median 1.0481 0.86733 8.9716 2 0 Median 78193000 38908000 39285000 53501000 26875000 26626000 24692000 12033000 12659000 5419 803 5551 14222;14223;14224;14225 22174;22175;22176;22177;22178;22179;22180;22181;22182 22180 9 GSGTAEVELK ALDTKGPEIRTGLIKGSGTAEVELKKGATL TGLIKGSGTAEVELKKGATLKITLDNAYME K G S L K K 1 0 0 0 0 0 2 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 10 0 989.50294 V9HWB8;P14618;A0A024R5Z9;H3BTN5;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 V9HWB8 126 135 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 1.8219E-11 130.75 2 1 2.9522 2.8388 43.437 2 Median 3.4219 3.8594 NaN 1 0 Median 2.5469 2.088 NaN 1 0 Median 104320000 14752000 89566000 101880000 14107000 87778000 2433000 644920 1788100 5420 1481 5552 14226;14227;14228 22183;22184;22185;22186;22187 22183 5 GSGVTTYSVHPGTVQSELVR LANILFTQELARRLKGSGVTTYSVHPGTVQ TYSVHPGTVQSELVRHSSFMRWMWWLFSFF K G S V R H 0 1 0 0 0 1 1 3 1 0 1 0 0 0 1 3 3 0 1 4 0 0 20 0 2073.0491 H0YIZ8;G3V2G6;B3KQ19;A0A0S2Z583;Q8TC12 H0YIZ8 53 72 RDH11 Retinol dehydrogenase 11 yes no 3 0.0004118 35.015 1 1.053 1.0972 NaN 1 Median 1.053 1.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median 22301000 9046400 13254000 22301000 9046400 13254000 0 0 0 5421 577 5553 14229 22188;22189;22190 22188 3 GSIFVVFDSIESAK VLNIQMRRTLHKAFKGSIFVVFDSIESAKK KGSIFVVFDSIESAKKFVETPGQKYKETDL K G S A K K 1 0 0 1 0 0 1 1 0 2 0 1 0 2 0 3 0 0 0 2 0 0 14 0 1497.7715 B5BUB5;P05455;Q14730;E9PGX9;E7ERC4 B5BUB5 152 165 SSB Lupus La protein yes no 2 0.051827 43.604 1 1.2049 1.2112 NaN 1 Median 1.2049 1.2112 NaN 1 0 Median NaN NaN NaN 0 0 Median 5222000 2286500 2935500 5222000 2286500 2935500 0 0 0 5422 1077 5554 14230 22191 22191 0 GSIIISPCVVCR GPFVMRSTCRRCGGRGSIIISPCVVCRGAG GGRGSIIISPCVVCRGAGQAKQKKRVMIPV R G S C R G 0 1 0 0 2 0 0 1 0 3 0 0 0 0 1 2 0 0 0 2 0 0 12 0 1359.7003 Q59E88;Q53G26;Q96EY1;B3KM81 Q59E88 280 291 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 0.004961 64.297 2 2 0.90883 0.78246 11.144 2 Median NaN NaN NaN 0 0 Median 0.90883 0.78246 11.144 2 0 Median 9437900 4862300 4575700 0 0 0 9437900 4862300 4575700 5423 1786 5555 14231;14232;14233;14234 22192;22193;22194;22195;22196;22197 22192 6 GSISSTSEVHSPPNVGLR RSGEAVISNTSRLSRGSISSTSEVHSPPNV SSTSEVHSPPNVGLRRSGQIEGVRQMHSNA R G S L R R 0 1 1 0 0 0 1 2 1 1 1 0 0 0 2 5 1 0 0 2 0 0 18 0 1822.9173 Q8WWQ0 Q8WWQ0 673 690 PHIP PH-interacting protein yes yes 3 0.00030283 38.417 1 1 0.59359 0.5874 66.621 2 Median 0.86873 0.94086 NaN 1 0 Median 0.40559 0.36673 NaN 1 0 Median 29620000 16045000 13576000 27418000 14795000 12623000 2202500 1249900 952610 5424 1942 5556 14235;14236 22198;22199 22198 2 GSISVFEVDGK KCVWKHPPGDEIYRKGSISVFEVDGKKNKI IYRKGSISVFEVDGKKNKIYCQNLCLLAKL K G S G K K 0 0 0 1 0 0 1 2 0 1 0 1 0 1 0 2 0 0 0 2 0 0 11 0 1136.5714 O95251;E7EUP3;B7Z4D9;B3KVJ2;B4DJ40 O95251 402 412 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 0.026417 40.727 1 0.8133 0.82585 NaN 1 Median 0.8133 0.82585 NaN 1 0 Median NaN NaN NaN 0 0 Median 12788000 7842900 4945000 12788000 7842900 4945000 0 0 0 5425 1422 5557 14237 22200 22200 1 GSISVFEVDGKK KCVWKHPPGDEIYRKGSISVFEVDGKKNKI YRKGSISVFEVDGKKNKIYCQNLCLLAKLF K G S K K N 0 0 0 1 0 0 1 2 0 1 0 2 0 1 0 2 0 0 0 2 0 0 12 1 1264.6663 O95251;E7EUP3;B7Z4D9;B3KVJ2;B4DJ40 O95251 402 413 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 0.0082262 57.348 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7439100 7439100 0 7439100 7439100 0 0 0 0 5426 1422 5558 14238 22201 22201 1 GSLDESSLGFGYPK PDPNWKNFQKPGTWRGSLDESSLGFGYPKF RGSLDESSLGFGYPKFISHQDIRKRNYVRD R G S P K F 0 0 0 1 0 0 1 3 0 0 2 1 0 1 1 3 0 0 1 0 0 0 14 0 1455.6882 A0A024QZ59;Q9BUZ4;A0A024QZ19;Q2KJU6;Q2KJU5;Q2KJU3 A0A024QZ59 425 438 TRAF4 TNF receptor-associated factor 4 yes no 2 0.0050162 55.718 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5427 11 5559 14239 22202 22202 1 GSLDYRPLTTADPIDEHR TNPNYEIMCMIRDFRGSLDYRPLTTADPID DYRPLTTADPIDEHRICVCVRKRPLNKKET R G S H R I 1 2 0 3 0 0 1 1 1 1 2 0 0 0 2 1 2 0 1 0 0 0 18 1 2055.0021 B0AZS5;O00139;B4DM85;D6R9M0 B0AZS5 160 177 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 3 0.039623 19.036 1 1.0111 1.055 NaN 1 Median 1.0111 1.055 NaN 1 0 Median NaN NaN NaN 0 0 Median 13358000 6472500 6885500 13358000 6472500 6885500 0 0 0 5428 804 5560 14240 22203 22203 1 GSLELCDFVTASSFCR ALLDKLYALGLVPTRGSLELCDFVTASSFC SLELCDFVTASSFCRRRLPTVLLKLRMAQH R G S C R R 1 1 0 1 2 0 1 1 0 0 2 0 0 2 0 3 1 0 0 1 0 0 16 0 1847.8182 Q9NV31 Q9NV31 93 108 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 1.3219E-08 105.17 2 2 0.77314 0.78372 18.797 3 Median 0.72999 0.73626 8.8337 2 0 Median 1.2149 1.0009 NaN 1 0 Median 48609000 24908000 23701000 37349000 20861000 16488000 11260000 4047000 7213500 5429 2073 5561 14241;14242;14243;14244 22204;22205;22206;22207;22208;22209 22206 6 GSLESPATDVFGSTEEGEK RWSTLVEDYGMELRKGSLESPATDVFGSTE SPATDVFGSTEEGEKRWKDLKNRVVEHNIR K G S E K R 1 0 0 1 0 0 4 3 0 0 1 1 0 1 1 3 2 0 0 1 0 0 19 0 1938.8694 A0A0S2Z489;O00232 A0A0S2Z489 331 349 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 1.7861E-22 128.76 2 2.0616 2.2038 3.9925 2 Median 2.0616 2.2038 3.9925 2 0 Median NaN NaN NaN 0 0 Median 69107000 23626000 45480000 69107000 23626000 45480000 0 0 0 5430 558 5562 14245;14246 22210;22211;22212 22210 3 GSLEVLNLK FREIDELIKKETKGKGSLEVLNLKDVEEGD KETKGKGSLEVLNLKDVEEGDEKFE_____ K G S L K D 0 0 1 0 0 0 1 1 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 971.56515 A0A0S2Z5I7;A0A087X020;Q9Y3A5 A0A0S2Z5I7 232 240 SBDS Ribosome maturation protein SBDS yes no 2 0.038893 50.607 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4832900 0 4832900 4832900 0 4832900 0 0 0 5431 442 5563 14247 22213 22213 1 GSLGGGFSSGGFSGGSFSR GGGGGVSSLRISSSKGSLGGGFSSGGFSGG GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY K G S S R G 0 1 0 0 0 0 0 8 0 0 1 0 0 3 0 6 0 0 0 0 0 0 19 0 1706.7649 CON__P13645;P13645 CON__P13645 41 59 KRT10 Keratin, type I cytoskeletal 10 yes no 2 1.3079E-06 77.222 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 502220000 502220000 0 290140000 290140000 0 212080000 212080000 0 + 5432 1161 5564 14248;14249;14250 22214;22215;22216;22217;22218 22217 5 GSLGQGTAPVLPGK VGKGLQVKAASVPVKGSLGQGTAPVLPGKT KGSLGQGTAPVLPGKTGPTVTQVKAEKQED K G S G K T 1 0 0 0 0 1 0 4 0 0 2 1 0 0 2 1 1 0 0 1 0 0 14 0 1280.7089 E7ETY2;B4DRA2;B4DLB1;Q13428;Q59FZ2 Q13428 733 746 TCOF1 Treacle protein no no 2 1.8955E-06 107.09 2 2 1.1831 1.1318 40.069 4 Median 0.70956 0.79735 1.2434 2 0 Median 1.9987 1.5959 0.29364 2 0 Median 224040000 119180000 104860000 194440000 109850000 84588000 29600000 9330300 20270000 5433 1712;1225 5565 14251;14252;14253;14254 22219;22220;22221;22222;22223;22224;22225 22219 7 GSLGSQGAKDEPEEELQK KRDKASGDVKEKKGKGSLGSQGAKDEPEEE GSQGAKDEPEEELQKGMGTVEGGDQSNPKS K G S Q K G 1 0 0 1 0 2 4 3 0 0 2 2 0 0 1 2 0 0 0 0 0 0 18 1 1900.9014 E7ETY2;B4DRA2;Q9UFD4;Q13428 Q13428 1406 1423 TCOF1;DKFZp434G1035 Treacle protein no no 2;3 1.296E-39 120.9 3 2 0.52259 0.57863 27.509 5 Median 0.52259 0.60516 22.038 3 0 Median 0.52221 0.44422 2.3269 2 0 Median 154710000 100110000 54602000 81803000 52384000 29418000 72905000 47721000 25184000 5434 1712;1225 5566 14255;14256;14257;14258;14259 22226;22227;22228;22229;22230;22231;22232;22233;22234 22233 9 GSLLDFLK VSEEPIYIVTEYMSKGSLLDFLKGETGKYL VTEYMSKGSLLDFLKGETGKYLRLPQLVDM K G S L K G 0 0 0 1 0 0 0 1 0 0 3 1 0 1 0 1 0 0 0 0 0 0 8 0 891.50657 Q9H7V3;B3KPS6;B2RA70;J3QRU1;P12931;P06241;P07947;B4DQ79;A8K4G3;A8K379;H0Y3C5;J3KPD6;Q6NUK7;P07948;P08631 Q9H7V3 62 69 YES1;SRC;FYN;HCK;LYN Non-specific protein-tyrosine kinase;Proto-oncogene tyrosine-protein kinase Src;Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Yes;Tyrosine-protein kinase Lyn;Tyrosine-protein kinase HCK yes no 2 0.041092 46.994 1 1.7308 1.7211 NaN 1 Median 1.7308 1.7211 NaN 1 0 Median NaN NaN NaN 0 0 Median 8046800 2985300 5061500 8046800 2985300 5061500 0 0 0 5435 870 5567 14260 22235 22235 1 GSLQILDQLLLPK ______________________________ SRGSLQILDQLLLPKQSRYEAVGSVHQAWE R G S P K Q 0 0 0 1 0 2 0 1 0 1 5 1 0 0 1 1 0 0 0 0 0 0 13 0 1436.8603 Q9BV20 Q9BV20 11 23 MRI1 Methylthioribose-1-phosphate isomerase yes yes 2 0.00063484 80.706 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7239700 0 7239700 7239700 0 7239700 0 0 0 5436 2006 5568 14261;14262;14263 22236;22237;22238 22237 3 GSLVDYLR EEKGGLYIVTEYMAKGSLVDYLRSRGRSVL VTEYMAKGSLVDYLRSRGRSVLGGDCLLKF K G S L R S 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 8 0 921.49198 B4DMZ0;Q53EL3;B5BU52;B2R6Q4;A8K3B6;P41240;B4DP99 B4DMZ0 193 200 CSK Non-specific protein-tyrosine kinase;Tyrosine-protein kinase CSK yes no 2 0.027047 54.157 1 3.0117 3.0172 NaN 1 Median 3.0117 3.0172 NaN 1 0 Median NaN NaN NaN 0 0 Median 6813300 1648500 5164800 6813300 1648500 5164800 0 0 0 5437 720 5569 14264 22239 22239 1 GSNEEDTDTPLFIGK HTGIDLVGTIIATIKGSNEEDTDTPLFIGK GSNEEDTDTPLFIGKVRTLEFPFVNGSAEI K G S G K V 0 0 1 2 0 0 2 2 0 1 1 1 0 1 1 1 2 0 0 0 0 0 15 0 1621.7471 A6NHR9;J3KTL8 A6NHR9 1543 1557 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.00016251 93.011 2 1.0984 1.13 0.88331 2 Median 1.0984 1.13 0.88331 2 0 Median NaN NaN NaN 0 0 Median 42409000 18766000 23643000 42409000 18766000 23643000 0 0 0 5438 684 5570 14265;14266 22240;22241;22242;22243;22244 22243 5 GSNNVALGYDEGSIIVK LNYGMERVWCVASLRGSNNVALGYDEGSII NNVALGYDEGSIIVKLGREEPAMSMDANGK R G S V K L 1 0 2 1 0 0 1 3 0 2 1 1 0 0 0 2 0 0 1 2 0 0 17 0 1734.8788 P35606 P35606 282 298 COPB2 Coatomer subunit beta yes yes 2 1.0862E-05 85.536 2 1.7866 1.872 NaN 1 Median 1.7866 1.872 NaN 1 0 Median NaN NaN NaN 0 0 Median 32231000 8869900 23361000 32231000 8869900 23361000 0 0 0 5439 1545 5571 14267;14268 22245;22246;22247 22246 3 GSPETNHLIR SYLKKCRRRSAVGARGSPETNHLIRFIARQ AVGARGSPETNHLIRFIARQQNIKNARKSP R G S I R F 0 1 1 0 0 0 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 10 0 1122.5782 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 82 91 CDCA2 Cell division cycle-associated protein 2 yes no 2;3 0.0018792 70.056 1 3 1.4711 1.2741 40.073 4 Median 0.67607 0.67775 NaN 1 0 Median 2.0481 1.7111 20.325 3 0 Plateau 26745000 13992000 12753000 18019000 10572000 7446700 8725900 3419800 5306100 5440 1233 5572 14269;14270;14271;14272 22248;22249;22250;22251;22252 22248 5 GSPGVVHLVAFHPDPTR RVWDIVRHYGTHHFRGSPGVVHLVAFHPDP PGVVHLVAFHPDPTRLLLFSSATDAAIRVW R G S T R L 1 1 0 1 0 0 0 2 2 0 1 0 0 1 3 1 1 0 0 3 0 0 17 0 1784.9322 A0A087WYP7;Q12788;J3KNP2 Q12788 149 165 TBL3 Transducin beta-like protein 3 no no 3 0.0022945 33.405 1 1 0.85807 0.81057 21.398 2 Median 0.68112 0.69676 NaN 1 0 Median 1.081 0.94299 NaN 1 0 Median 60353000 30155000 30198000 34700000 17821000 16879000 25653000 12334000 13319000 5441 1698;436 5573 14273;14274 22253;22254 22253 2 GSPLGEVVEQGITR VQEKYVWNKRESTEKGSPLGEVVEQGITRV KGSPLGEVVEQGITRVRNATDAVGIVLKEL K G S T R V 0 1 0 0 0 1 2 3 0 1 1 0 0 0 1 1 1 0 0 2 0 0 14 0 1440.7573 P51398;V9GYJ9;V9GYL9;E2JL21 P51398 219 232 DAP3;MRPS29 28S ribosomal protein S29, mitochondrial yes no 2 6.6215E-05 90.614 1 1.6163 1.6344 NaN 1 Median 1.6163 1.6344 NaN 1 0 Median NaN NaN NaN 0 0 Median 17860000 6822300 11038000 17860000 6822300 11038000 0 0 0 5442 1594 5574 14275 22255 22255 1 GSPLLGPVVPGPSPIPSVTEK QVAHLCSQQSKQDSRGSPLLGPVVPGPSPI PVVPGPSPIPSVTEKRLSSGQNKASGKRQR R G S E K R 0 0 0 0 0 0 1 3 0 1 2 1 0 0 6 3 1 0 0 3 0 0 21 0 2027.1303 P49454 P49454 2995 3015 CENPF Centromere protein F yes yes 2 1.9018E-15 105.19 2 1 1.2341 1.2175 9.5851 3 Median 1.1607 1.2117 13.55 2 0 Median 1.5635 1.2175 NaN 1 0 Median 43865000 21164000 22701000 40348000 19716000 20632000 3516500 1447600 2068900 5443 1581 5575 14276;14277;14278 22256;22257;22258;22259;22260;22261;22262;22263 22257 8 GSPNTASAEATLPR LRDKIASYSSLREARGSPNTASAEATLPRW RGSPNTASAEATLPRWRAGEQAQPPGDQEP R G S P R W 3 1 1 0 0 0 1 1 0 0 1 0 0 0 2 2 2 0 0 0 0 0 14 0 1370.679 Q6PJG6 Q6PJG6 741 754 BRAT1 BRCA1-associated ATM activator 1 yes yes 2 0.042202 41.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5444 1856 5576 14279 22264 22264 1 GSPTGGAQLLK MSQSGPSGSHPQGPRGSPTGGAQLLKRKRK QGPRGSPTGGAQLLKRKRKLGVVPVNGSGL R G S L K R 1 0 0 0 0 1 0 3 0 0 2 1 0 0 1 1 1 0 0 0 0 0 11 0 1027.5662 Q14684 Q14684 512 522 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.031266 48.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5445 1740 5577 14280 22265 22265 1 GSQAPSLPNTSEAQK EDDEEEMEEKLAKAKGSQAPSLPNTSEAQK GSQAPSLPNTSEAQKIKEVPTQFLDRDEEE K G S Q K I 2 0 1 0 0 2 1 1 0 0 1 1 0 0 2 3 1 0 0 0 0 0 15 0 1513.7372 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 601 615 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 1.3163E-05 90.614 2 0.87788 0.91568 6.7714 2 Median 0.87788 0.91568 6.7714 2 0 Median NaN NaN NaN 0 0 Median 41057000 20290000 20767000 41057000 20290000 20767000 0 0 0 5446 1708 5578 14281;14282 22266;22267;22268 22268 3 GSRPLLSFDPAFDELPHYALLK IHTLAELKMTGNCLKGSRPLLSFDPAFDEL FDPAFDELPHYALLKELLIQIFSTPRYHPK K G S L K E 2 1 0 2 0 0 1 1 1 0 5 1 0 2 3 2 0 0 1 0 0 0 22 1 2485.3005 Q8TDN6;A0JLQ5 Q8TDN6 161 182 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3;4 5.903E-09 77.543 3 2 0.97848 1.1761 11.239 5 Median 0.97846 1.1531 6.0337 3 0 Median 1.5685 1.3602 0.90444 2 0 Median 335800000 167510000 168290000 253380000 134030000 119350000 82427000 33487000 48939000 5447 1934 5579 14283;14284;14285;14286;14287 22269;22270;22271;22272;22273;22274;22275;22276;22277 22270 9 GSSAGGGGSGAAAATAATAGGQHR ______________________________ GAAAATAATAGGQHRNVQPFSDEDASIETM R G S H R N 8 1 0 0 0 1 0 8 1 0 0 0 0 0 0 3 2 0 0 0 0 0 24 0 1926.8892 C9JLG5;C9JA65;Q75M98;Q75M99;A4D0U1;O00458 C9JLG5 13 36 IFRD1 Interferon-related developmental regulator 1 yes no 3 0.0012017 13.663 1 0.19191 0.16736 NaN 1 Median NaN NaN NaN 0 0 Median 0.19191 0.16736 NaN 1 0 Median 1468800 1195100 273690 0 0 0 1468800 1195100 273690 5448 658 5580 14288 22278 22278 1 GSSAVGLTAYVMK YVYNLVPRGQYTSGKGSSAVGLTAYVMKDP GKGSSAVGLTAYVMKDPETRQLVLQTGALV K G S M K D 2 0 0 0 0 0 0 2 0 0 1 1 1 0 0 2 1 0 1 2 0 0 13 0 1282.6591 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RG31 B4DLA6 497 509 MCM4 DNA replication licensing factor MCM4 yes no 2 6.3423E-05 79.659 1 1.5466 1.5916 NaN 1 Median 1.5466 1.5916 NaN 1 0 Median NaN NaN NaN 0 0 Median 18031000 6052100 11979000 18031000 6052100 11979000 0 0 0 5449 235 5581 14289 22279 22279 176 1 GSSFEMTDDDSAIR SMTQQDSHAPLRDSRGSSFEMTDDDSAIRA RGSSFEMTDDDSAIRALTQFPLPKNLLAKV R G S I R A 1 1 0 3 0 0 1 1 0 1 0 0 1 1 0 3 1 0 0 0 0 0 14 0 1529.6304 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 196 209 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 1.7614E-06 93.345 2 1.4242 1.4333 NaN 1 Median 1.4242 1.4333 NaN 1 0 Median NaN NaN NaN 0 0 Median 17487000 5357700 12130000 17487000 5357700 12130000 0 0 0 5450 122 5582 14290;14291 22280;22281;22282;22283 22281 104 4 GSSGGGCFGGSSGGYGGLGGFGGGSFR GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY GGYGGLGGFGGGSFRGSYGSSSFGGSYGGS R G S F R G 0 1 0 0 1 0 0 15 0 0 1 0 0 3 0 5 0 0 1 0 0 0 27 0 2341.9771 CON__P13645;P13645 CON__P13645 60 86 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.1355E-57 135.28 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 377980000 377980000 0 219740000 219740000 0 158240000 158240000 0 + 5451 1161 5583 14292;14293;14294;14295 22284;22285;22286;22287 22284 4 GSSGVGLTAAVLR YIDRLAPRSQYTTGRGSSGVGLTAAVLRDS GRGSSGVGLTAAVLRDSVSGELTLEGGALV R G S L R D 2 1 0 0 0 0 0 3 0 0 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1186.667 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;Q9H4N9 B3KUD7 301 313 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 8.8805E-06 101.48 1 1 0.86415 0.84764 57.3 2 Median 1.1283 1.2711 NaN 1 0 Median 0.66183 0.56526 NaN 1 0 Median 49454000 22640000 26813000 46561000 21001000 25560000 2893100 1639100 1254000 5452 560 5584 14296;14297 22288;22289;22290;22291 22289 4 GSSGVGLTAAVTTDQETGER YVLCTAPRAIPTTGRGSSGVGLTAAVTTDQ GLTAAVTTDQETGERRLEAGAMVLADRGVV R G S E R R 2 1 0 1 0 1 2 4 0 0 1 0 0 0 0 2 4 0 0 2 0 0 20 0 1934.9181 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69 Q53HJ4 372 391 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 1.0499E-17 119.96 2 1.1599 1.2251 4.2132 2 Median 1.1599 1.2251 4.2132 2 0 Median NaN NaN NaN 0 0 Median 61211000 27418000 33793000 61211000 27418000 33793000 0 0 0 5453 568 5585 14298;14299 22292;22293;22294;22295;22296;22297 22296 6 GSSLGAGNVADR SIIFFDELDALAVERGSSLGAGNVADRVLA VERGSSLGAGNVADRVLAQLLTEMDGIEQL R G S D R V 2 1 1 1 0 0 0 3 0 0 1 0 0 0 0 2 0 0 0 1 0 0 12 0 1102.5367 Q8NB90 Q8NB90 737 748 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 0.006403 60.398 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3090400 0 3090400 3090400 0 3090400 0 0 0 5454 1919 5586 14300 22298 22298 1 GSSSANPVNSVR RMVSEEMEEQVHSIRGSSSANPVNSVRRKS SIRGSSSANPVNSVRRKSCLVKEVEKMKNK R G S V R R 1 1 2 0 0 0 0 1 0 0 0 0 0 0 1 4 0 0 0 2 0 0 12 0 1173.5738 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;Q5JR89 A8K3S3 178 189 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 1.7315E-10 109.16 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30357000 30357000 0 30357000 30357000 0 0 0 0 5455 626 5587 14301;14302 22299;22300 22300 2 GSSSGGGYSSGSSSYGSGGR SNVASKAAFGGSGGRGSSSGGGYSSGSSSY GGYSSGSSSYGSGGRQSGSRGGSGGGGSIS R G S G R Q 0 1 0 0 0 0 0 8 0 0 0 0 0 0 0 9 0 0 2 0 0 0 20 0 1739.6983 CON__P35908;P35908 CON__P35908 531 550 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 2.3084E-05 64.675 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2399000 2399000 0 2399000 2399000 0 0 0 0 + 5456 1166 5588 14303 22301 22301 1 GSSVDGSPLLLFLR CAHLCNAVIGYLNTRGSSVDGSPLLLFLRD RGSSVDGSPLLLFLRDQTSSRLLEQVLLVL R G S L R D 0 1 0 1 0 0 0 2 0 0 4 0 0 1 1 3 0 0 0 1 0 0 14 0 1459.8035 Q5HYL4;Q86U38 Q5HYL4 311 324 DKFZp686E1893;NOP9 Nucleolar protein 9 yes no 2 6.5263E-05 104.82 2 0.72817 0.74017 5.201 2 Median 0.72817 0.74017 5.201 2 0 Median NaN NaN NaN 0 0 Median 22737000 13243000 9494000 22737000 13243000 9494000 0 0 0 5457 1807 5589 14304;14305 22302;22303 22303 2 GSTDNLMDDIER KHEKEDGAISTIVLRGSTDNLMDDIERAVD VLRGSTDNLMDDIERAVDDGVNTFKVLTRD R G S E R A 0 1 1 3 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 0 0 0 12 0 1364.5878 Q7Z759;Q53HU0;P50990 Q7Z759 328 339 CCT8 T-complex protein 1 subunit theta yes no 2 0.002516 57.348 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9064300 0 9064300 9064300 0 9064300 0 0 0 5458 1592 5590 14306 22304 22304 1374 1 GSTESCNTTTEDEDLK EPQTTVVHNATDGIKGSTESCNTTTEDEDL STESCNTTTEDEDLKVRKQEIIKITEQLIE K G S L K V 0 0 1 2 1 0 3 1 0 0 1 1 0 0 0 2 4 0 0 0 0 0 16 0 1785.7211 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;H0Y6G2;Q8WU40;B3KY86;Q13280;B3KTH7;Q59FI6 Q5SWX3 367 382 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 3.0112E-06 83.617 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3673700 0 3673700 3673700 0 3673700 0 0 0 5459 475 5591 14307;14308;14309 22305;22306;22307 22306 3 GSTHPQPGVSPPAAPAAPGPK GLSSSPSEILQELGKGSTHPQPGVSPPAAP PGVSPPAAPAAPGPKDGPGETDAFGNSEGK K G S P K D 4 0 0 0 0 1 0 3 1 0 0 1 0 0 7 2 1 0 0 1 0 0 21 0 1919.9854 A8K132;O94925;Q53TX0 A8K132 86 106 GLS Glutaminase kidney isoform, mitochondrial yes no 3 2.1836E-07 56.719 1 3.2125 3.2146 NaN 1 Median 3.2125 3.2146 NaN 1 0 Median NaN NaN NaN 0 0 Median 15514000 4453400 11061000 15514000 4453400 11061000 0 0 0 5460 701 5592 14310 22308;22309 22308 2 GSTLDLSDLEAEK VGWLLVRKHPAVKEKGSTLDLSDLEAEKLV EKGSTLDLSDLEAEKLVMFQRRYYKPGLLL K G S E K L 1 0 0 2 0 0 2 1 0 0 3 1 0 0 0 2 1 0 0 0 0 0 13 0 1376.6671 Q59GX7;O00767 Q59GX7 204 216 SCD Acyl-CoA desaturase yes no 2 0.006618 59.418 1 0.86628 0.89638 NaN 1 Median 0.86628 0.89638 NaN 1 0 Median NaN NaN NaN 0 0 Median 18601000 9632600 8968800 18601000 9632600 8968800 0 0 0 5461 1365 5593 14311 22310 22310 1 GSTMEEELENITTK ILFNRVLGVSGSQSRGSTMEEELENITTKH RGSTMEEELENITTKHIVSNDSSDSDDESH R G S T K H 0 0 1 0 0 0 4 1 0 1 1 1 1 0 0 1 3 0 0 0 0 0 14 0 1580.724 A8K2S1;P47712;B4DZI4 A8K2S1 414 427 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes no 2 0.00096043 63.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5377300 0 5377300 5377300 0 5377300 0 0 0 5462 712 5594 14312 22311 22311 548 1 GSVDQYLLR QRMFDNERRTVSRRKGSVDQYLLRSSNMAG TVSRRKGSVDQYLLRSSNMAGAK_______ K G S L R S 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1049.5506 Q8NCN4;H0YEQ1 Q8NCN4 692 700 RNF169 E3 ubiquitin-protein ligase RNF169 yes no 2 0.046953 39.253 1 1.8039 1.583 NaN 1 Median NaN NaN NaN 0 0 Median 1.8039 1.583 NaN 1 0 Median 1724900 685320 1039600 0 0 0 1724900 685320 1039600 5463 1923 5595 14313 22312 22312 1 GSVDSNWIVGATLEK FGYQLDLPKANLLFKGSVDSNWIVGATLEK GSVDSNWIVGATLEKKLPPLPLTLALGAFL K G S E K K 1 0 1 1 0 0 1 2 0 1 1 1 0 0 0 2 1 1 0 2 0 0 15 0 1574.794 O96008 O96008 316 330 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes yes 2 1.3899E-10 121.69 2 2 1.7298 1.6206 28.182 4 Median 1.1492 1.2927 0.18244 2 0 Median 2.6216 2.101 4.9274 2 0 Median 210960000 99822000 111140000 190490000 93352000 97139000 20467000 6469200 13997000 5464 1433 5596 14314;14315;14316;14317 22313;22314;22315;22316;22317;22318 22316 6 GSVHSVSFSPDGR VSLVCRSVLHHFHFKGSVHSVSFSPDGRKF FKGSVHSVSFSPDGRKFVVTKGNIAQMYHA K G S G R K 0 1 0 1 0 0 0 2 1 0 0 0 0 1 1 4 0 0 0 2 0 0 13 0 1330.6266 Q15269;A0A0B4J2E5 Q15269 97 109 PWP2 Periodic tryptophan protein 2 homolog yes no 2;3 4.81E-24 160.53 4 4 1.0768 1.0511 5.7172 8 Median 0.93587 1.0787 2.4167 4 0 Median 1.1691 0.97712 3.0055 4 0 Median 462560000 224900000 237670000 404270000 197770000 206490000 58297000 27124000 31173000 5465 1756 5597 14318;14319;14320;14321;14322;14323;14324;14325 22319;22320;22321;22322;22323;22324;22325;22326;22327;22328;22329;22330 22320 12 GSVLEPEGTVEIK INPRHMEMYADRESRGSVLEPEGTVEIKFR SRGSVLEPEGTVEIKFRRKDLVKTMRRVDP R G S I K F 0 0 0 0 0 0 3 2 0 1 1 1 0 0 1 1 1 0 0 2 0 0 13 0 1356.7137 A0A024R0Y2;B2ZZ90;Q13085;Q7Z5W8;Q59FY4;B4DIG6;B4DIW1;B4DWK9;B4DIR2;B4DK31 A0A024R0Y2 2037 2049 hCG_30204;ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.0085865 43.77 1 1.1767 1.1887 NaN 1 Median 1.1767 1.1887 NaN 1 0 Median NaN NaN NaN 0 0 Median 13200000 7147100 6053300 13200000 7147100 6053300 0 0 0 5466 60 5598 14326 22331 22331 1 GSVMPSVIR GSSEAPASQPPPQVRGSVMPSVIRAHAIIT PPPQVRGSVMPSVIRAHAIITLGKLCLQHE R G S I R A 0 1 0 0 0 0 0 1 0 1 0 0 1 0 1 2 0 0 0 2 0 0 9 0 944.51134 P42695;G3V1A9 P42695 912 920 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.0036175 61.962 1 1.3698 1.3687 NaN 1 Median 1.3698 1.3687 NaN 1 0 Median NaN NaN NaN 0 0 Median 8840000 4101800 4738100 8840000 4101800 4738100 0 0 0 5467 1565 5599 14327 22332 22332 1320 1 GSVPLSSSPPATHFPDETEITNPVPK PQKSVVSDLEADDVKGSVPLSSSPPATHFP THFPDETEITNPVPKKNVTVKKTAAKSQSS K G S P K K 1 0 1 1 0 0 2 1 1 1 1 1 0 1 6 4 3 0 0 2 0 0 26 0 2703.3392 P11388 P11388 1386 1411 TOP2A DNA topoisomerase 2-alpha yes yes 3 1.0558E-06 46.307 2 2 0.74564 0.73352 21.439 4 Median 0.78089 0.89497 7.9085 2 0 Median 0.725 0.62331 2.8006 2 0 Median 592530000 340290000 252240000 371550000 213780000 157770000 220980000 126510000 94469000 5468 1471 5600 14328;14329;14330;14331 22333;22334;22335;22336;22337;22338;22339;22340;22341;22342 22337 10 GSVSCPTCQAVGR AGSLEEQWYLEIVDKGSVSCPTCQAVGRKT DKGSVSCPTCQAVGRKTIEGLKKHMENCKQ K G S G R K 1 1 0 0 2 1 0 2 0 0 0 0 0 0 1 2 1 0 0 2 0 0 13 0 1377.6129 G3XAG1;Q96ME7;B4DES6;B7Z9P6 G3XAG1 166 178 ZNF512 Zinc finger protein 512 yes no 2 1.5313E-09 123.75 1 2 0.78249 0.67222 33.515 3 Median 0.3649 0.37854 NaN 1 0 Median 0.80042 0.67636 0.86921 2 0 Median 37531000 23093000 14438000 21926000 14211000 7715200 15605000 8881900 6722800 5469 1275 5601 14332;14333;14334 22343;22344;22345;22346;22347 22343 5 GSVTLSEIR RKNKASPQSEFMPSKGSVTLSEIRLPLKAD EFMPSKGSVTLSEIRLPLKADFVCSTVQKP K G S I R L 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 2 1 0 0 1 0 0 9 0 960.52401 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1C2;H7C1K5 B4DSL6 679 687 ANLN Actin-binding protein anillin yes no 2 0.023349 56.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10512000 0 10512000 10512000 0 10512000 0 0 0 5470 294 5602 14335 22348 22348 1 GSYGDLGGPIITTQVTIPK PQGGSGYDYSYAGGRGSYGDLGGPIITTQV DLGGPIITTQVTIPKDLAGSIIGKGGQRIK R G S P K D 0 0 0 1 0 1 0 4 0 3 1 1 0 0 2 1 3 0 1 1 0 0 19 0 1916.0255 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2;B3KU16;S4R359 B4DUQ1 354 372 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 2.06E-22 152 2 2 1.425 1.6024 31.318 3 Plateau 1.3871 1.5159 11.249 2 0 Median 1.1163 0.89703 NaN 1 0 Median 116520000 42704000 73819000 89282000 35628000 53654000 27241000 7076400 20165000 5471 102 5603 14336;14337;14338;14339 22349;22350;22351;22352;22353;22354;22355;22356;22357 22349 9 GSYLTVTLQRPTK SGKKELSEVEKAKIRGSYLTVTLQRPTKEL IRGSYLTVTLQRPTKELHGTSIVPKLQAIT R G S T K E 0 1 0 0 0 1 0 1 0 0 2 1 0 0 1 1 3 0 1 1 0 0 13 1 1462.8144 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 779 791 KDM2A Lysine-specific demethylase 2A yes no 2 0.0042304 60.49 1 0.51147 0.42964 NaN 1 Median NaN NaN NaN 0 0 Median 0.51147 0.42964 NaN 1 0 Median 4770200 3322000 1448200 0 0 0 4770200 3322000 1448200 5472 1323 5604 14340 22358 22358 1 GSYVSIHSSGFR APQESTPAPPKKDIKGSYVSIHSSGFRDFL DIKGSYVSIHSSGFRDFLLKPELLRAIVDC K G S F R D 0 1 0 0 0 0 0 2 1 1 0 0 0 1 0 4 0 0 1 1 0 0 12 0 1295.6258 A0A024RCM3;Q13838;Q5STU3;F6WLT2;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;F6QYI9;A0A0G2JJL7;F6R6M7;K7EN69;Q7KYK3;K7ENP6;A0A0G2JHN7;K7EL56;K7EIL8;F6U6E2;F6S2B7;F6SXL5;B4DH55;B4DF34;O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3 O00148 36 47 hCG_2005638;DDX39B;DDX39A;BAT1;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 0.00045542 59.542 1 2 1.5177 1.7597 56.19 3 Plateau 1.5192 1.7652 NaN 1 0 Median 0.79695 0.66704 0.83195 2 0 Median 73944000 32965000 40980000 63331000 27166000 36165000 10613000 5798800 4814500 5473 1359;362 5605 14341;14342;14343 22359;22360;22361;22362 22362 3 GTAAAAAAAAAAAK AALLKASPKKAPGTKGTAAAAAAAAAAAKV KGTAAAAAAAAAAAKVPAKKITAASKKAPA K G T A K V 11 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 14 0 1085.5829 A8K3Q9 A8K3Q9 148 161 yes yes 2 1.6949E-47 187.55 2 2 0.94684 1.0907 14.563 4 Linear 0.91167 1.0814 1.8568 2 0 Median 0.9857 0.84347 3.9279 2 0 Median 1687300000 844660000 842690000 1515300000 758200000 757070000 172070000 86456000 85614000 5474 725 5606 14344;14345;14346;14347 22363;22364;22365;22366;22367;22368;22369;22370;22371;22372 22366 10 GTAEPITVTIVPAYR EQRVPDALVFTIQTRGTAEPITVTIVPAYR GTAEPITVTIVPAYRALGPSLPNSQPPPEV R G T Y R A 2 1 0 0 0 0 1 1 0 2 0 0 0 0 2 0 3 0 1 2 0 0 15 0 1586.8668 B3KN79;Q15646 B3KN79 144 158 OASL 2-5-oligoadenylate synthase-like protein yes no 2 0.0025694 44.543 2 2 1.2991 1.1038 27.996 3 Median 1.4247 1.4752 NaN 1 0 Median 1.1399 0.9645 19.074 2 0 Median 15218000 6418900 8799400 5932600 2145400 3787200 9285800 4273600 5012200 5475 911 5607 14348;14349;14350;14351 22373;22374;22375;22376;22377;22378 22378 6 GTAFVTLLNGEQAEAAINAFHQSR LSDYELKYCFVDKYKGTAFVTLLNGEQAEA GEQAEAAINAFHQSRLRERELSVQLQPTDA K G T S R L 5 1 2 0 0 2 2 2 1 1 2 0 0 2 0 1 2 0 0 1 0 0 24 0 2544.2721 A0A087WZ13;E9PAU2;Q8IY67 A0A087WZ13 94 117 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 3 1.67E-09 57.578 1 1.4812 1.5073 NaN 1 Median 1.4812 1.5073 NaN 1 0 Median NaN NaN NaN 0 0 Median 7187600 3409000 3778500 7187600 3409000 3778500 0 0 0 5476 438 5608 14352 22379;22380 22379 2 GTATFDGTAIANAVVK HATAHSLVLVDELGRGTATFDGTAIANAVV TATFDGTAIANAVVKELAETIKCRTLFSTH R G T V K E 4 0 1 1 0 0 0 2 0 1 0 1 0 1 0 0 3 0 0 2 0 0 16 0 1534.7991 P52701;A0A087WYT6;Q6LAI4 P52701 1218 1233 MSH6 DNA mismatch repair protein Msh6 yes no 2 3.0478E-06 90.434 3 0.79875 0.78455 10.197 3 Median 0.79875 0.78455 10.197 3 0 Median NaN NaN NaN 0 0 Median 50232000 26258000 23974000 50232000 26258000 23974000 0 0 0 5477 1601 5609 14353;14354;14355 22381;22382;22383;22384;22385 22384 5 GTAYTFFTPGNLK DYVHRIGRTARSTNKGTAYTFFTPGNLKQA NKGTAYTFFTPGNLKQARELIKVLEEANQA K G T L K Q 1 0 1 0 0 0 0 2 0 0 1 1 0 2 1 0 3 0 1 0 0 0 13 0 1415.7085 Q59F66;Q92841 Q59F66 518 530 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.027279 42.743 1 2 0.92605 0.74986 10.031 2 Median NaN NaN NaN 0 0 Median 0.92605 0.74986 10.031 2 0 Median 32881000 8054100 24827000 17098000 0 17098000 15783000 8054100 7729300 5478 1801 5610 14356;14357;14358 22386;22387;22388 22388 3 GTCVEGTIPK ELCRVLLDNVENKMKGTCVEGTIPKLFRGK ENKMKGTCVEGTIPKLFRGKMVSYIQCKEV K G T P K L 0 0 0 0 1 0 1 2 0 1 0 1 0 0 1 0 2 0 0 1 0 0 10 0 1060.5223 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q93009 313 322 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.03824 49.85 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5849800 5849800 0 5849800 5849800 0 0 0 0 5479 1954 5611 14359 22389 22389 1 GTDDFDFAGSFQGPR LEVHSKVSTKKSKRKGTDDFDFAGSFQGPR GTDDFDFAGSFQGPRKKKRNLNDSSLFVSA K G T P R K 1 1 0 3 0 1 0 3 0 0 0 0 0 3 1 1 1 0 0 0 0 0 15 0 1615.6903 B2R5U7;Q03701 B2R5U7 950 964 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 2.5147E-47 178.71 2 2 1.3334 1.234 7.0565 4 Median 1.1836 1.3157 2.5368 2 0 Median 1.4318 1.1682 1.2239 2 0 Median 125990000 52868000 73120000 100500000 42213000 58291000 25483000 10655000 14829000 5480 836;1683 5612 14360;14361;14362;14363 22390;22391;22392;22393;22394;22395;22396;22397 22391 8 GTDLSNLPVTYYSQK NLCVVGKAKKPRAFKGTDLSNLPVTYYSQK GTDLSNLPVTYYSQKGAWIEQSVFRQWFEK K G T Q K G 0 0 1 1 0 1 0 1 0 0 2 1 0 0 1 2 2 0 2 1 0 0 15 0 1684.8308 V9HWD1;B3KNK0;Q4W5G0 V9HWD1 239 253 HEL106;TIGD2 Tigger transposable element-derived protein 2 yes no 2 0.0042107 39.878 2 1.0676 0.85089 0.42106 2 Median NaN NaN NaN 0 0 Median 1.0676 0.85089 0.42106 2 0 Median 6176300 3248600 2927600 0 0 0 6176300 3248600 2927600 5481 914 5613 14364;14365 22398;22399 22399 2 GTDTQTPAVLSPSK SSKKVAFLRQNAPPKGTDTQTPAVLSPSKT KGTDTQTPAVLSPSKTQATLKPKDHHQPLG K G T S K T 1 0 0 1 0 1 0 1 0 0 1 1 0 0 2 2 3 0 0 1 0 0 14 0 1400.7147 P46087 P46087 722 735 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 8.1988E-10 122.33 2 2 1.081 1.0355 31.563 4 Median 1.241 1.3729 4.0967 2 0 Median 0.98469 0.79606 1.3986 2 0 Median 119900000 55583000 64318000 105030000 48123000 56903000 14875000 7459500 7415200 5482 1570 5614 14366;14367;14368;14369 22400;22401;22402;22403;22404;22405 22400 5 GTEASSGTEAATGLEGEEK KTEIMSPLYQDEAPKGTEASSGTEAATGLE SSGTEAATGLEGEEKDGISDSDSSTSSEEE K G T E K D 3 0 0 0 0 0 5 4 0 0 1 1 0 0 0 2 3 0 0 0 0 0 19 0 1822.8068 Q8IY81;B4DKU3 Q8IY81 594 612 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 3.9877E-254 313.32 2 2 1.1092 1.0953 2.0566 4 Median 0.97147 1.0996 0.94452 2 0 Median 1.2892 1.0772 2.7467 2 0 Median 319420000 157820000 161600000 224310000 117430000 106880000 95111000 40393000 54719000 5483 1898 5615 14370;14371;14372;14373 22406;22407;22408;22409;22410;22411;22412;22413 22409 8 GTEDITSPHGIPLDLLDR PIVIFASNRGNCVIRGTEDITSPHGIPLDL DITSPHGIPLDLLDRVMTIRTMLYTPQEMK R G T D R V 0 1 0 3 0 0 1 2 1 2 3 0 0 0 2 1 2 0 0 0 0 0 18 0 1947.9902 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4G5;J3QLR1 B5BUB1 340 357 RUVBL1 RuvB-like 1 yes no 3 3.0105E-09 99.044 2 2 0.96186 0.95304 2.7775 4 Median 0.83255 0.95304 2.3859 2 0 Median 1.1083 0.94947 4.1606 2 0 Median 351890000 191230000 160650000 284240000 159050000 125190000 67644000 32176000 35468000 5484 1076 5616 14374;14375;14376;14377 22414;22415;22416;22417;22418;22419;22420;22421 22414 8 GTEITHAVVIK ______________________________ MFAKGTEITHAVVIKKLNEILQARGKKGTD K G T I K K 1 0 0 0 0 0 1 1 1 2 0 1 0 0 0 0 2 0 0 2 0 0 11 0 1166.6659 A0A024QYX7;B3KNZ4;B4DRU0;B4DVU3;B4E2Z6;B4DDN4;B4DVQ5;A1KYQ7;A0A024QYU9;Q99613;B5ME19 A0A024QYX7 5 15 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 5.7131E-08 116.3 1 2.3974 2.433 NaN 1 Median 2.3974 2.433 NaN 1 0 Median NaN NaN NaN 0 0 Median 12832000 3301800 9530700 12832000 3301800 9530700 0 0 0 5485 6 5617 14378 22422 22422 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR ENSNQSFHSEGSLQKGTEPSPGGTPQPSRP AGPPEGVPEEAQPPRLGQERDPGGITAGST K G T P R L 2 2 0 0 0 2 4 5 0 0 0 0 0 0 11 3 2 0 0 2 0 0 33 1 3258.5905 I3L1Q2;Q8WUZ0 I3L1Q2 110 142 BCL7C B-cell CLL/lymphoma 7 protein family member C yes no 3 0.032747 14.053 1 1 1.6855 1.6039 2.2984 2 Median 1.5579 1.5781 NaN 1 0 Median 1.8235 1.6302 NaN 1 0 Median 12285000 4310400 7974200 11017000 3849500 7167100 1268000 460900 807100 5486 1319 5618 14379;14380 22423;22424;22425 22424 3 GTEPSTDGETSEAESNYSVSEHHDTILR KARKRKSRTTGSLPKGTEPSTDGETSEAES ESNYSVSEHHDTILRVTRRRQILIACSPVS K G T L R V 1 1 1 2 0 0 5 2 2 1 1 0 0 0 1 5 4 0 1 1 0 0 28 0 3047.3228 Q5QJE6;J3KP30;B7Z854;E9PRB3 Q5QJE6 78 105 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 3;4 6.4214E-66 151.18 3 2 1.1643 1.1586 13.96 4 Median 0.90746 1.0208 1.9978 2 0 Median 1.5141 1.2989 0.26358 2 0 Median 216430000 98178000 118250000 158290000 75965000 82327000 58140000 22213000 35928000 5487 1813 5619 14381;14382;14383;14384;14385 22426;22427;22428;22429;22430;22431;22432 22428 7 GTEVQVDDIK IQLITAASLVCRKRKGTEVQVDDIKRVYSL CRKRKGTEVQVDDIKRVYSLFLDESRSTQY K G T I K R 0 0 0 2 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 10 0 1102.5506 Q9Y230;B3KNL2 Q9Y230 418 427 RUVBL2 RuvB-like 2 yes no 2 1.0883E-22 152.34 3 2 0.99929 0.80479 3.217 2 Median NaN NaN NaN 0 0 Median 0.99929 0.80479 3.217 2 0 Median 43334000 36760000 6573500 29790000 29790000 0 13543000 6969800 6573500 5488 2120 5620 14386;14387;14388;14389;14390 22433;22434;22435;22436;22437;22438;22439;22440 22436 8 GTGDNENLVR KPKAEDLRTECATCKGTGDNENLVRCDECR CATCKGTGDNENLVRCDECRLCYHFGCLDP K G T V R C 0 1 2 1 0 0 1 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1073.5102 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 876 885 PHF14 PHD finger protein 14 yes no 2 0.045382 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5489 590 5621 14391 22441 22441 1 GTGEAEEEYVGPR GNAVRAGVREKRRGRGTGEAEEEYVGPRLS GRGTGEAEEEYVGPRLSRRILQQARQQQEE R G T P R L 1 1 0 0 0 0 4 3 0 0 0 0 0 0 1 0 1 0 1 1 0 0 13 0 1392.6157 Q13895;F8WBL2 Q13895 41 53 BYSL Bystin yes no 2 3.1077E-05 94.66 4 2 1.0632 0.88357 18.587 4 Median 0.89755 0.97361 30.696 2 0 Median 1.0632 0.88357 0.12114 2 0 Median 99993000 54469000 45524000 81132000 45268000 35864000 18861000 9200400 9660600 5490 1724 5622 14392;14393;14394;14395;14396;14397 22442;22443;22444;22445;22446;22447;22448;22449 22445 8 GTGIVSAPVPK GRCGSVLVRLIPAPRGTGIVSAPVPKKLLM PAPRGTGIVSAPVPKKLLMMAGIDDCYTSA R G T P K K 1 0 0 0 0 0 0 2 0 1 0 1 0 0 2 1 1 0 0 2 0 0 11 0 1024.5917 P15880;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PMM9;E9PQD7;I3L404;E9PM36;Q9BSW5 P15880 201 211 RPS2;rps2 40S ribosomal protein S2 yes no 2 2.1765E-12 141.02 2 2 1.0192 1.2436 28.031 4 Linear 1.0049 1.1928 3.0091 2 0 Median 0.86062 0.73501 1.9347 2 0 Median 1559200000 791910000 767240000 1402800000 707940000 694840000 156380000 83978000 72398000 5491 1485 5623 14398;14399;14400;14401 22450;22451;22452;22453;22454;22455;22456 22451 7 GTGQSDDSDIWDDTALIK GGGVPEQEDSVLFRRGTGQSDDSDIWDDTA QSDDSDIWDDTALIKAYDKAVASFKHALKN R G T I K A 1 0 0 5 0 1 0 2 0 2 1 1 0 0 0 2 2 1 0 0 0 0 18 0 1935.8698 B4DP61;E7EQZ4;Q16637 B4DP61 24 41 SMN2;SMN1 Survival motor neuron protein yes no 2 3.2005E-05 65.043 2 1.7954 1.8213 4.3996 2 Median 1.7954 1.8213 4.3996 2 0 Median NaN NaN NaN 0 0 Median 19492000 7735500 11756000 19492000 7735500 11756000 0 0 0 5492 1019 5624 14402;14403 22457;22458;22459 22458 3 GTGSGLIGASGATMPTDTSK TATKGVPATNPAPGKGTGSGLIGASGATMP LIGASGATMPTDTSKSEKLASRAVAPPTPA K G T S K S 2 0 0 1 0 0 0 5 0 1 1 1 1 0 1 3 4 0 0 0 0 0 20 0 1807.8622 Q14781 Q14781 391 410 CBX2 Chromobox protein homolog 2 yes yes 2 1.0292E-06 69.345 1 0.97715 1.0073 NaN 1 Median 0.97715 1.0073 NaN 1 0 Median NaN NaN NaN 0 0 Median 12842000 6556200 6285700 12842000 6556200 6285700 0 0 0 5493 1744 5625 14404 22460;22461 22461 1595 2 GTGVVTSVPSDSPDDIAALR KVIYVLPMLTIKEDKGTGVVTSVPSDSPDD TSVPSDSPDDIAALRDLKKKQALRAKYGIR K G T L R D 2 1 0 3 0 0 0 2 0 1 1 0 0 0 2 3 2 0 0 3 0 0 20 0 1955.98 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3 B4E266 339 358 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 1.3851E-06 74.769 2 2 1.083 1.0324 50.605 4 Median 1.4499 1.5275 2.5079 2 0 Median 0.76045 0.64326 14.009 2 0 Median 78531000 32564000 45966000 63508000 24277000 39232000 15022000 8287800 6734700 5494 883 5626 14405;14406;14407;14408 22462;22463;22464;22465;22466;22467;22468;22469 22462 8 GTHQLYSTSHDR FTGHRDAVSGLAFRRGTHQLYSTSHDRSVK FRRGTHQLYSTSHDRSVKVWNVAENSYVET R G T D R S 0 1 0 1 0 1 0 1 2 0 1 0 0 0 0 2 2 0 1 0 0 0 12 0 1400.6433 O43818 O43818 252 263 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2;3 0.00014515 78.653 2 0.7699 0.80112 3.8515 2 Median 0.7699 0.80112 3.8515 2 0 Median NaN NaN NaN 0 0 Median 13832000 7998800 5833200 13832000 7998800 5833200 0 0 0 5495 1389 5627 14409;14410 22470;22471;22472 22470 3 GTIEILSDVQLIK TSFFQALGITTKISRGTIEILSDVQLIKTG SRGTIEILSDVQLIKTGDKVGASEATLLNM R G T I K T 0 0 0 1 0 1 1 1 0 3 2 1 0 0 0 1 1 0 0 1 0 0 13 0 1427.8235 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q53HK9;F8VW21;B4E3D5;Q8NHW5;F8VPE8 Q53HW2 150 162 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 3.413E-75 224.58 2 1 1.0617 1.2609 25.936 3 Plateau 1.0615 1.2543 0.74625 2 0 Median 0.93717 0.80047 NaN 1 0 Median 970150000 474170000 495980000 904150000 441660000 462490000 65992000 32502000 33490000 5496 345 5628 14411;14412;14413 22473;22474;22475;22476;22477;22478 22476 6 GTILISSEEGETEANNHK KFAMVAPDVQIEDGKGTILISSEEGETEAN LISSEEGETEANNHKKLSEFGIRNGSRLQA K G T H K K 1 0 2 0 0 0 4 2 1 2 1 1 0 0 0 2 2 0 0 0 0 0 18 0 1927.9123 B3KMZ6;B2RDF5;Q9UBT2;U3KQ93;B3KNA3;K7ESK7 B3KMZ6 487 504 UBA2 SUMO-activating enzyme subunit 2 yes no 3 0.0012331 48.053 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7953900 0 7953900 7953900 0 7953900 0 0 0 5497 887 5629 14414 22479 22479 1 GTIQVITQGTSLK EALGTLMRAWAGSPKGTIQVITQGTSLKNA PKGTIQVITQGTSLKNAGNCLSPAVIVGLL K G T L K N 0 0 0 0 0 2 0 2 0 2 1 1 0 0 0 1 3 0 0 1 0 0 13 0 1344.7613 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 352 364 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 4.974E-05 96.756 2 2 2.4819 2.357 45.323 4 Median 3.0878 3.4771 0.84619 2 0 Median 1.9632 1.5864 1.8526 2 0 Median 211480000 49357000 162130000 196540000 44635000 151900000 14945000 4721600 10223000 5498 1382 5630 14415;14416;14417;14418 22480;22481;22482;22483;22484;22485;22486;22487 22480 8 GTLDPVEK ITRARFEELNADLFRGTLDPVEKALRDAKL LNADLFRGTLDPVEKALRDAKLDKSQIHDI R G T E K A 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 0 857.44945 E9PN89;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2 V9HW22 312 319 HSPA8;HEL-S-72p Heat shock cognate 71 kDa protein no no 2 0.0092293 75.213 2 1 1.3011 1.4846 13.131 3 Plateau 1.2772 1.4733 3.5514 2 0 Median 1.4674 1.1785 NaN 1 0 Median 433180000 196150000 237030000 418030000 190240000 227790000 15146000 5907900 9237800 5499 1467;1248 5631 14419;14420;14421 22488;22489;22490;22491;22492;22493 22492 6 GTLEQWIEK SKTKCLFIQMEFCDKGTLEQWIEKRRGEKL MEFCDKGTLEQWIEKRRGEKLDKVLALELF K G T E K R 0 0 0 0 0 1 2 1 0 1 1 1 0 0 0 0 1 1 0 0 0 0 9 0 1102.5659 Q8IW76;B7ZKK7;P19525;Q05CP4;Q6PK38 Q8IW76 372 380 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.013268 56.729 2 1.1503 1.1758 22.802 2 Median 1.1503 1.1758 22.802 2 0 Median NaN NaN NaN 0 0 Median 25783000 11310000 14473000 25783000 11310000 14473000 0 0 0 5500 1111 5632 14422;14423 22494;22495 22495 2 GTLITHCYK FWLLPVKQSGVPLAKGTLITHCYKDLGFMD GVPLAKGTLITHCYKDLGFMDFICSLVTKS K G T Y K D 0 0 0 0 1 0 0 1 1 1 1 1 0 0 0 0 2 0 1 0 0 0 9 0 1091.5434 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 176 184 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00069605 111.82 2 2 1.0056 0.9479 12.553 4 Median 0.75269 0.83431 13.886 2 0 Median 1.2234 0.98571 1.3655 2 0 Median 124800000 70078000 54724000 105160000 61571000 43588000 19643000 8507600 11136000 5501 897 5633 14424;14425;14426;14427 22496;22497;22498;22499;22500;22501 22497 6 GTLSGWILSK PVPTGEVYFADSFDRGTLSGWILSKAKKDD DSFDRGTLSGWILSKAKKDDTDDEIAKYDG R G T S K A 0 0 0 0 0 0 0 2 0 1 2 1 0 0 0 2 1 1 0 0 0 0 10 0 1060.5917 P27824;H0Y9Q7;Q16094;D6RB85;D6RDP7;D6RAQ8;D6RAU8 P27824 78 87 CANX Calnexin yes no 2 0.027593 43.77 1 0.83103 0.84305 NaN 1 Median 0.83103 0.84305 NaN 1 0 Median NaN NaN NaN 0 0 Median 18163000 8383600 9779000 18163000 8383600 9779000 0 0 0 5502 1526 5634 14428 22502;22503 22502 2 GTMTEIYNDLSK ADIAKYTSKMMDAIKGTMTEIYNDLSKNTT AIKGTMTEIYNDLSKNTTGSTIAEIRRLRI K G T S K N 0 0 1 1 0 0 1 1 0 1 1 1 1 0 0 1 2 0 1 0 0 0 12 0 1370.6388 H7C4X9;A0A087WYS3;Q9ULU4 H7C4X9 820 831 ZMYND8 Protein kinase C-binding protein 1 yes no 2 0.015041 42.001 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3155900 0 3155900 3155900 0 3155900 0 0 0 5503 1317 5635 14429 22504 22504 998 1 GTNIQENEYVK EAIDFDSQACQLRVKGTNIQENEYVKMGAY LRVKGTNIQENEYVKMGAYHTIELEPNRQF K G T V K M 0 0 2 0 0 1 2 1 0 1 0 1 0 0 0 0 1 0 1 1 0 0 11 0 1293.6201 B3KPC1;A0A024QZR3;Q9BRX2 B3KPC1 85 95 hCG_2002731;PELO Protein pelota homolog yes no 2 1.3018E-08 116.52 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11380000 3267600 8112800 11380000 3267600 8112800 0 0 0 5504 26 5636 14430;14431;14432;14433 22505;22506;22507;22508 22505 4 GTNTSSPYDAGADYLR IGSPPVTSSQVMLSKGTNTSSPYDAGADYL TNTSSPYDAGADYLRACPKCNVQFNLLDPL K G T L R A 2 1 1 2 0 0 0 2 0 0 1 0 0 0 1 2 2 0 2 0 0 0 16 0 1686.7485 Q8ND82;Q9UJJ2 Q8ND82 222 237 ZNF280C Zinc finger protein 280C yes no 2 0.00043634 49.483 1 2 2.8511 2.4553 0.64099 2 Median NaN NaN NaN 0 0 Median 2.8511 2.4553 0.64099 2 0 Median 12848000 2168700 10679000 4712000 0 4712000 8135800 2168700 5967000 5505 1924 5637 14434;14435;14436 22509;22510;22511 22510 3 GTPAGTTPGASQAPK LEQANKGAPHSSPARGTPAGTTPGASQAPK GTPAGTTPGASQAPKAFNKPHLANGHVVPI R G T P K A 3 0 0 0 0 1 0 3 0 0 0 1 0 0 3 1 3 0 0 0 0 0 15 0 1339.6732 Q8IVT2 Q8IVT2 218 232 MISP Mitotic interactor and substrate of PLK1 yes yes 2 0.00022059 64.64 2 0.97014 0.9715 0.060394 2 Median 0.97014 0.9715 0.060394 2 0 Median NaN NaN NaN 0 0 Median 11660000 6348800 5311100 11660000 6348800 5311100 0 0 0 5506 1892 5638 14437;14438 22512;22513;22514 22513 3 GTQCVEQIQELVLR EVFGFISLLNLTERKGTQCVEQIQELVLRF KGTQCVEQIQELVLRFCEKNCEKSMVEQLD K G T L R F 0 1 0 0 1 3 2 1 0 1 2 0 0 0 0 0 1 0 0 2 0 0 14 0 1671.8614 Q9P287;B4E318;B4DUS0 Q9P287 138 151 BCCIP BRCA2 and CDKN1A-interacting protein yes no 2 0.0012871 72.34 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4733000 0 4733000 0 0 0 4733000 0 4733000 5507 2094 5639 14439;14440 22515;22516 22515 2 GTQGAEEVLR AIYLEKLKTISLVIRGTQGAEEVLRAHEEQ SLVIRGTQGAEEVLRAHEEQLKEAQAVPAT R G T L R A 1 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1058.5356 Q15149 Q15149 1234 1243 PLEC Plectin yes yes 2 0.00018094 94.692 2 1.2641 1.3393 3.9452 2 Median 1.2641 1.3393 3.9452 2 0 Median NaN NaN NaN 0 0 Median 50870000 19369000 31501000 50870000 19369000 31501000 0 0 0 5508 1754 5640 14441;14442 22517;22518 22518 2 GTQGATAGASSELDASK YRGRKKGKKKDQIGKGTQGATAGASSELDA QGATAGASSELDASKTVSSPPTSPRPGSAA K G T S K T 4 0 0 1 0 1 1 3 0 0 1 1 0 0 0 3 2 0 0 0 0 0 17 0 1549.722 V9HWK0;O76094 V9HWK0 601 617 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 8.5318E-07 85.45 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2699500 0 2699500 2699500 0 2699500 0 0 0 5509 1416 5641 14443;14444;14445 22519;22520;22521 22520 3 GTQGVVTNFEIFR KNGDYLCVKVYRTPKGTQGVVTNFEIFRMR PKGTQGVVTNFEIFRMREKQVPVDVVEMKE K G T F R M 0 1 1 0 0 1 1 2 0 1 0 0 0 2 0 0 2 0 0 2 0 0 13 0 1466.7518 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q59FS8 Q96G38 344 356 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 2 0.013457 38.27 1 1.0941 0.92918 NaN 1 Median NaN NaN NaN 0 0 Median 1.0941 0.92918 NaN 1 0 Median 3107200 1405300 1701900 0 0 0 3107200 1405300 1701900 5510 241 5642 14446 22522 22522 1 GTQLLSSGSDGLVK EGHDASVLKVAFVSRGTQLLSSGSDGLVKL RGTQLLSSGSDGLVKLWTIKNNECVRTLDA R G T V K L 0 0 0 1 0 1 0 3 0 0 3 1 0 0 0 3 1 0 0 1 0 0 14 0 1360.7198 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 575 588 TBL3 Transducin beta-like protein 3 no no 2 1.6401E-42 165.7 2 2 1.2991 1.0605 0.036223 2 Median NaN NaN NaN 0 0 Median 1.2991 1.0605 0.036223 2 0 Median 104890000 71605000 33284000 44576000 44576000 0 60313000 27030000 33284000 5511 1698;436 5643 14447;14448;14449;14450 22523;22524;22525;22526;22527;22528;22529 22523 7 GTQTYSVLEGDPSENYSK YDRVVRREICRIITKGTQTYSVLEGDPSEN TYSVLEGDPSENYSKYLLSLKEKEEDSSGH K G T S K Y 0 0 1 1 0 1 2 2 0 0 1 1 0 0 1 3 2 0 2 1 0 0 18 0 1973.8854 P52701;A0A087WWJ1;Q1L838 P52701 520 537 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 7.7282E-08 92.039 3 0.87339 0.89662 17.629 2 Median 0.87339 0.89662 17.629 2 0 Median NaN NaN NaN 0 0 Median 20656000 10653000 10003000 20656000 10653000 10003000 0 0 0 5512 1601 5644 14451;14452;14453 22530;22531;22532;22533;22534;22535;22536 22535 7 GTQVYSPEK LAWGVNLPAHTVIIKGTQVYSPEKGRWTEL HTVIIKGTQVYSPEKGRWTELGALDILQML K G T E K G 0 0 0 0 0 1 1 1 0 0 0 1 0 0 1 1 1 0 1 1 0 0 9 0 1007.4924 O75643;A4FU77;Q9H8B9 O75643 830 838 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00033401 101.72 1 0.95539 0.97308 NaN 1 Median 0.95539 0.97308 NaN 1 0 Median NaN NaN NaN 0 0 Median 17954000 9456200 8498200 17954000 9456200 8498200 0 0 0 5513 1411 5645 14454 22537;22538 22538 2 GTQYSLCIFR RCQCGPDCPNRIVQKGTQYSLCIFRTSNGR RIVQKGTQYSLCIFRTSNGRGWGVKTLVKI K G T F R T 0 1 0 0 1 1 0 1 0 1 1 0 0 1 0 1 1 0 1 0 0 0 10 0 1243.6019 Q9H5I1;C9IYH9 Q9H5I1 247 256 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 yes no 2 0.015104 48.794 1 2.1084 1.7947 NaN 1 Median NaN NaN NaN 0 0 Median 2.1084 1.7947 NaN 1 0 Median 2947000 787340 2159600 0 0 0 2947000 787340 2159600 5514 2036 5646 14455 22539;22540 22539 2 GTSFDAAATSGGSASSEK CTVKCDEKVKVFSVRGTSFDAAATSGGSAS FDAAATSGGSASSEKASSTSPVEISEWLDQ R G T E K A 4 0 0 1 0 0 1 3 0 0 0 1 0 1 0 5 2 0 0 0 0 0 18 0 1629.7118 A0A0S2Z3L0;P13804;A0A0S2Z3M4;H0YL12;H0YKF0;H0YLU7;H0YK49;H0YNX6 A0A0S2Z3L0 170 187 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 5.3493E-140 242.4 2 1 2.7998 2.6366 65.376 2 Median 3.7373 4.1861 NaN 1 0 Median 2.0974 1.6607 NaN 1 0 Median 72890000 26173000 46717000 67932000 25111000 42821000 4958100 1061300 3896800 5515 553 5647 14456;14457;14458 22541;22542;22543;22544;22545;22546 22543 6 GTSYQSPHGIPIDLLDR PVLIMATNRGITRIRGTSYQSPHGIPIDLL SYQSPHGIPIDLLDRLLIVSTTPYSEKDTK R G T D R L 0 1 0 2 0 1 0 2 1 2 2 0 0 0 2 2 1 0 1 0 0 0 17 0 1867.9428 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 337 353 RUVBL2 RuvB-like 2 yes no 3 2.3578E-05 64.507 2 1.1553 0.97762 3.438 2 Median NaN NaN NaN 0 0 Median 1.1553 0.97762 3.438 2 0 Median 45140000 21107000 24033000 0 0 0 45140000 21107000 24033000 5516 2120 5648 14459;14460 22547;22548;22549 22549 3 GTTAPGPIHLLELCDQK ______________________________ TAPGPIHLLELCDQKLMEFLCNMDNKDLVW M G T Q K L 1 0 0 1 1 1 1 2 1 1 3 1 0 0 2 0 2 0 0 0 0 0 17 0 1848.9404 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 2 18 INCENP Inner centromere protein yes no 2 6.3888E-09 105.95 2 2 1.2584 1.2576 21.752 4 Median 0.90563 1.0356 2.2943 2 0 Median 1.7425 1.5083 0.53441 2 0 Median 659670000 292850000 366820000 341500000 174560000 166940000 318170000 118290000 199880000 5517 2059 5649 14461;14462;14463;14464 22550;22551;22552;22553;22554;22555;22556;22557 22550 8 GTVEEEIIER IGQKKQVNIYRLVTKGTVEEEIIERAKKKM RLVTKGTVEEEIIERAKKKMVLDHLVIQRM K G T E R A 0 1 0 0 0 0 4 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1173.5877 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5;A0A0D9SF92 A0A024RC75 919 928 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 2.6099E-08 113.71 2 2 1.2551 1.0834 13.068 2 Median NaN NaN NaN 0 0 Median 1.2551 1.0834 13.068 2 0 Median 23157000 17986000 5170300 14409000 14409000 0 8747700 3577400 5170300 5518 354 5650 14465;14466;14467;14468 22558;22559;22560;22561;22562 22559 5 GTVEGFEPADNK TLKKYDGRTKPIPKKGTVEGFEPADNKCLL PKKGTVEGFEPADNKCLLRATDGKKKISTV K G T N K C 1 0 1 1 0 0 2 2 0 0 0 1 0 1 1 0 1 0 0 1 0 0 12 0 1262.5779 P37108;H0YLA2 P37108 44 55 SRP14 Signal recognition particle 14 kDa protein yes no 2 0.00018714 76.143 2 0.59553 0.62984 12.545 2 Median 0.59553 0.62984 12.545 2 0 Median NaN NaN NaN 0 0 Median 33092000 19477000 13615000 33092000 19477000 13615000 0 0 0 5519 1549 5651 14469;14470 22563;22564;22565 22565 3 GTVEPQLEAR TGEVEVVIQDPMGQKGTVEPQLEARGDSTY PMGQKGTVEPQLEARGDSTYRCSYQPTMEG K G T A R G 1 1 0 0 0 1 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 10 0 1098.5669 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 428 437 FLNA Filamin-A yes no 2 1.137E-05 104.2 2 1.7619 1.948 1.4642 2 Median 1.7619 1.948 1.4642 2 0 Median NaN NaN NaN 0 0 Median 113920000 36186000 77731000 113920000 36186000 77731000 0 0 0 5520 1504 5652 14471;14472 22566;22567;22568 22566 3 GTVGSILDR IIKPQYVDQIPKAAKGTVGSILDRKDETKT IPKAAKGTVGSILDRKDETKTQAIVCQQLD K G T D R K 0 1 0 1 0 0 0 2 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 916.49779 P61221;D6R9I9;H0Y990;D6RGF4 P61221 182 190 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 0.051976 46.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6701000 0 6701000 6701000 0 6701000 0 0 0 5521 1628 5653 14473 22569 22569 1 GTVIEVNVSELGLVTQGGK NPSSPLYTTLGVITKGTVIEVNVSELGLVT EVNVSELGLVTQGGKVIWGKYAQVTNNPEN K G T G K V 0 0 1 0 0 1 2 4 0 1 2 1 0 0 0 1 2 0 0 4 0 0 19 0 1899.0313 Q5J7U2;O95478 Q5J7U2 217 235 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 5.6419E-12 104.55 1 1.0516 0.84905 NaN 1 Median NaN NaN NaN 0 0 Median 1.0516 0.84905 NaN 1 0 Median 22699000 10690000 12010000 0 0 0 22699000 10690000 12010000 5522 1427 5654 14474 22570;22571 22570 2 GTVIVQPEPVLNEDK NENSENDITMQSLPKGTVIVQPEPVLNEDK GTVIVQPEPVLNEDKDDFKGPEFRSRSKMK K G T D K D 0 0 1 1 0 1 2 1 0 1 1 1 0 0 2 0 1 0 0 3 0 0 15 0 1636.8672 A4LAA3;P46100;A0A096LNW1;A0A096LNN3;Q5H9A3;A0A087WWG0;A0A096LNL6 A4LAA3 124 138 ATRX Transcriptional regulator ATRX yes no 2 2.788E-08 112.13 2 1 0.9299 0.97811 7.8675 3 Median 0.90224 0.96684 1.6384 2 0 Median 1.42 1.1063 NaN 1 0 Median 74557000 42099000 32458000 70815000 40699000 30116000 3742200 1399700 2342500 5523 672 5655 14475;14476;14477 22572;22573;22574;22575;22576;22577 22572 6 GTVLDQVPINPSLYLVK SHGWKEGDEPITQWKGTVLDQVPINPSLYL VLDQVPINPSLYLVKYDGIDCVYGLELHRD K G T V K Y 0 0 1 1 0 1 0 1 0 1 3 1 0 0 2 1 1 0 1 3 0 0 17 0 1855.0455 Q5JZB8;A0A024R9Y9;A0A024R9W1;Q9BPZ2;Q99865 Q5JZB8 70 86 SPIN2B;SPIN-2;SPIN2;SPIN2A Spindlin-2B;Spindlin-2A yes no 2 0.0011587 42.809 2 1.1248 1.1343 5.1617 2 Median 1.1248 1.1343 5.1617 2 0 Median NaN NaN NaN 0 0 Median 10180000 4981100 5198600 10180000 4981100 5198600 0 0 0 5524 290 5656 14478;14479 22578;22579;22580 22580 3 GTVLLADNVICPGAPDFLAHVR LPDTLLLEECGLLRRGTVLLADNVICPGAP NVICPGAPDFLAHVRGSSCFECTHYQSFLE R G T V R G 3 1 1 2 1 0 0 2 1 1 3 0 0 1 2 0 1 0 0 3 0 0 22 0 2334.2154 B8XPJ7;B8XPJ8;A0A140VJG8;P21964 B8XPJ7 163 184 COMT Catechol O-methyltransferase yes no 3 1.3346E-09 77.287 2 2 1.6421 1.6702 NaN 1 Median 1.6421 1.6702 NaN 1 0 Median NaN NaN NaN 0 0 Median 66444000 6768500 59676000 54517000 6768500 47749000 11927000 0 11927000 5525 601 5657 14480;14481;14482;14483 22581;22582;22583;22584 22582 4 GTVVTGTLER PFLLPVEAVYSVPGRGTVVTGTLERGILKK SVPGRGTVVTGTLERGILKKGDECELLGHS R G T E R G 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 0 3 0 0 2 0 0 10 0 1031.5611 P49411 P49411 272 281 TUFM Elongation factor Tu, mitochondrial yes yes 2 5.7989E-09 124.74 2 2 1.7915 2.0947 33.088 4 Linear 1.7766 2.0585 1.6135 2 0 Median 1.3769 1.1626 4.2042 2 0 Median 432500000 149900000 282600000 416510000 143070000 273440000 15990000 6825800 9164100 5526 1580 5658 14484;14485;14486;14487 22585;22586;22587;22588;22589;22590;22591 22590 7 GTWVQLK RVKENDQKKKEAKEKGTWVQLKRQPAPPRE KKKEAKEKGTWVQLKRQPAPPREAHFVRTN K G T L K R 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 0 830.46504 Q6IAX2;P46778 Q6IAX2 123 129 RPL21 60S ribosomal protein L21 yes no 2 0.03153 66.994 2 2 0.83377 0.86543 7.7162 4 Linear 0.741 0.85917 2.2394 2 0 Median 0.94326 0.75433 2.0659 2 0 Median 487890000 272480000 215420000 453740000 254790000 198960000 34149000 17689000 16460000 5527 1571 5659 14488;14489;14490;14491 22592;22593;22594;22595 22593 4 GTYADDCLVQR IAKDPRFERLPCTHKGTYADDCLVQRVTQH CTHKGTYADDCLVQRVTQHKCYIVATVDRD K G T Q R V 1 1 0 2 1 1 0 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 11 0 1296.5768 G3V5S9;G3V1S4;Q4FZ45;Q9Y324;Q66K47;G3V2M5 G3V5S9 123 133 FCF1;DKFZp686O2396 rRNA-processing protein FCF1 homolog yes no 2 2.7755E-05 101.9 2 2 0.97587 0.94479 6.7121 4 Median 0.82799 0.89649 10.368 2 0 Median 1.1429 0.94479 0.35458 2 0 Median 103710000 52591000 51124000 84268000 43212000 41056000 19446000 9378400 10068000 5528 1272 5660 14492;14493;14494;14495 22596;22597;22598;22599;22600;22601;22602 22597 6 GTYLATFHQR ERARWTETYVRWSPKGTYLATFHQRGIALW RWSPKGTYLATFHQRGIALWGGEKFKQIQR K G T Q R G 1 1 0 0 0 1 0 1 1 0 1 0 0 1 0 0 2 0 1 0 0 0 10 0 1192.5989 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q86UM1;C9JQN7 Q96G38 155 164 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 2 0.00051176 85.676 2 1 1.1941 1.2702 22.961 3 Plateau 1.1941 1.2392 16.782 2 0 Median 1.0119 0.88161 NaN 1 0 Median 43690000 17602000 26088000 42191000 16829000 25363000 1498900 773430 725420 5529 241 5661 14496;14497;14498 22603;22604;22605;22606;22607 22606 5 GTYQPLSTR ATSGLDHQLKIFDLRGTYQPLSTRTLPHGA KIFDLRGTYQPLSTRTLPHGAGHLAFSQRG R G T T R T 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 1 2 0 1 0 0 0 9 0 1021.5193 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806 B0UZZ8 390 398 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.00018573 107.01 2 0.94409 1.0634 8.2721 2 Median 0.94409 1.0634 8.2721 2 0 Median NaN NaN NaN 0 0 Median 215540000 114940000 100600000 215540000 114940000 100600000 0 0 0 5530 809 5662 14499;14500 22608;22609;22610 22608 3 GVAFIR INSRVLVDQTTGLSRGVAFIRFDKRSEAEE VDQTTGLSRGVAFIRFDKRSEAEEAITSFN R G V I R F 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 6 0 661.39115 Q15717 Q15717 148 153 ELAVL1 ELAV-like protein 1 yes yes 2 0.03215 85.077 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5531 1764 5663 14501 22611 22611 1 GVAIGQTSLTASVTNK LDEALDNYTITFLIRGVAIGQTSLTASVTN VAIGQTSLTASVTNKAGQRINSAPQQIEVF R G V N K A 2 0 1 0 0 1 0 2 0 1 1 1 0 0 0 2 3 0 0 2 0 0 16 0 1545.8362 Q8TEM1 Q8TEM1 1048 1063 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 4.6811E-13 124.38 2 1 0.83097 0.95356 22.29 3 Plateau 0.86543 0.91137 16.055 2 0 Median 0.83097 0.65374 NaN 1 0 Median 38737000 20343000 18393000 36459000 19048000 17411000 2277400 1294800 982590 5532 1937 5664 14502;14503;14504 22612;22613;22614;22615;22616;22617;22618 22614 7 GVAINFVK LYIHRIGRSGRYGRKGVAINFVKNDDIRIL SGRYGRKGVAINFVKNDDIRILRDIEQYYS K G V V K N 1 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 2 0 0 8 0 846.49634 A0A024R8W0;P38919 A0A024R8W0 375 382 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.031174 51.456 1 1 1.9486 1.8193 37.468 2 Median 2.1965 2.3712 NaN 1 0 Median 1.7287 1.3959 NaN 1 0 Median 44600000 15187000 29413000 42048000 14140000 27908000 2552100 1046900 1505200 5533 261 5665 14505;14506 22619;22620;22621 22620 3 GVAINMVTEEDK NYIHRIGRGGRFGRKGVAINMVTEEDKRTL GRKGVAINMVTEEDKRTLRDIETFYNTSIE K G V D K R 1 0 1 1 0 0 2 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 12 0 1304.6282 A8K7F6;P60842;A8K088;B4DNH2 A8K7F6 370 381 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 2.3953E-13 134.68 4 2.5789 2.9389 2.2673 4 Median 2.5789 2.9389 2.2673 4 0 Median NaN NaN NaN 0 0 Median 454610000 118370000 336240000 454610000 118370000 336240000 0 0 0 5534 770 5666 14507;14508;14509;14510 22622;22623;22624;22625;22626;22627;22628 22628 598 7 GVAINMVTEEDKR NYIHRIGRGGRFGRKGVAINMVTEEDKRTL RKGVAINMVTEEDKRTLRDIETFYNTSIEE K G V K R T 1 1 1 1 0 0 2 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 13 1 1460.7293 A8K7F6;P60842;A8K088;B4DNH2 A8K7F6 370 382 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2;3 0.014352 39.917 3 1.6584 1.4182 34.905 2 Median NaN NaN NaN 0 0 Median 1.6584 1.4182 34.905 2 0 Median 5423600 1428900 3994700 0 0 0 5423600 1428900 3994700 5535 770 5667 14511;14512;14513 22629;22630;22631 22629 3 GVAVDGLNQLTVTTGSEGLLK RGSFGKDQAHKGSVRGVAVDGLNQLTVTTG LNQLTVTTGSEGLLKFWNFKNKILIHSVSL R G V L K F 1 0 1 1 0 1 1 4 0 0 4 1 0 0 0 1 3 0 0 3 0 0 21 0 2071.1161 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 488 508 WDR36 WD repeat-containing protein 36 yes no 2 5.7436E-196 266.15 2 2 1.0998 1.0856 1.7382 4 Median 0.96956 1.09 1.4148 2 0 Median 1.2556 1.0748 2.2579 2 0 Median 368210000 174130000 194080000 192010000 97208000 94801000 176200000 76919000 99283000 5536 486 5668 14514;14515;14516;14517 22632;22633;22634;22635;22636;22637;22638;22639 22637 8 GVDEVTIVNILTNR AERDALNIETAIKTKGVDEVTIVNILTNRS KGVDEVTIVNILTNRSNAQRQDIAFAYQRR K G V N R S 0 1 2 1 0 0 1 1 0 2 1 0 0 0 0 0 2 0 0 3 0 0 14 0 1541.8413 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YKS4;B4DNH8;H0YMM1;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YKL9;H0YKV8;H0YMD9 V9HW65 50 63 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 2 2.9612E-21 174.24 2 1 1.1965 1.1986 68.115 3 Median 1.4607 1.4643 28.315 2 0 Median 0.56592 0.47412 NaN 1 0 Median 38714000 17575000 21140000 34691000 15366000 19325000 4023100 2208700 1814400 5537 193 5669 14518;14519;14520 22640;22641;22642;22643;22644;22645 22643 6 GVDIVMDPLGGSDTAK ______________________________ VDIVMDPLGGSDTAKGYNLLKPMGKVVTYG K G V A K G 1 0 0 3 0 0 0 3 0 1 1 1 1 0 1 1 1 0 0 2 0 0 16 0 1573.7658 K7ESA3;K7ENX2;K7EM19;B3KUF8;A0A024R1Z6;Q99536 K7ESA3 4 19 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 0.0013092 54.7 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5538 98 5670 14521 22646 22646 87 1 GVDLQENNPASR KNEPQNATGAPGRNRGVDLQENNPASRSQC RNRGVDLQENNPASRSQCCSN_________ R G V S R S 1 1 2 1 0 1 1 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 12 0 1298.6215 A0A024R1U4;P51148;K7EIP6 A0A024R1U4 199 210 RAB5C Ras-related protein Rab-5C yes no 2 1.9527E-08 112.71 1 1 2.1943 1.9053 NaN 1 Median NaN NaN NaN 0 0 Median 2.1943 1.9053 NaN 1 0 Median 10389000 611520 9777100 8190900 0 8190900 2197800 611520 1586300 5539 92 5671 14522;14523 22647;22648;22649 22647 3 GVDLVLNSLAEEK DTSFEQHVLWHTGGKGVDLVLNSLAEEKLQ GKGVDLVLNSLAEEKLQASVRCLATHGRFL K G V E K L 1 0 1 1 0 0 2 1 0 0 3 1 0 0 0 1 0 0 0 2 0 0 13 0 1385.7402 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1738 1750 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00015631 86.014 1 1.5563 1.7256 NaN 1 Median 1.5563 1.7256 NaN 1 0 Median NaN NaN NaN 0 0 Median 47639000 17909000 29730000 47639000 17909000 29730000 0 0 0 5540 587 5672 14524 22650 22650 1 GVDSLLYR AGQDGPGSQVDTLLRGVDSLLYRRGPGPLT QVDTLLRGVDSLLYRRGPGPLTLTRPRPRK R G V Y R R 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 8 0 921.49198 Q4VC44;I3L188;J3KNW1;B3KRZ0 Q4VC44 368 375 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 0.063595 38.792 1 1.4106 1.2681 NaN 1 Median NaN NaN NaN 0 0 Median 1.4106 1.2681 NaN 1 0 Median 2010400 794450 1216000 0 0 0 2010400 794450 1216000 5541 1781 5673 14525 22651 22651 1 GVEAIPEGSHIK IIFLKDASRRTGDEKGVEAIPEGSHIKDNE DEKGVEAIPEGSHIKDNEQALYELVKCNFD K G V I K D 1 0 0 0 0 0 2 2 1 2 0 1 0 0 1 1 0 0 0 1 0 0 12 0 1235.651 Q8N108 Q8N108 240 251 MIER1 Mesoderm induction early response protein 1 yes yes 2 0.00020601 79.974 2 1 1.417 1.3098 8.4969 3 Median 1.3604 1.3904 10.981 2 0 Median 1.6522 1.3098 NaN 1 0 Median 48979000 21230000 27750000 44724000 19616000 25108000 4255600 1613800 2641800 5542 1903 5674 14526;14527;14528 22652;22653;22654;22655 22653 4 GVEEEEEDGEMRE LGEVLIRCNNVLYIRGVEEEEEDGEMRE__ IRGVEEEEEDGEMRE_______________ R G V R E - 0 1 0 1 0 0 7 2 0 0 0 0 1 0 0 0 0 0 0 1 0 0 13 1 1536.5886 P62306 P62306 74 86 SNRPF Small nuclear ribonucleoprotein F yes yes 2 2.31E-60 202.03 2 1 1.2857 1.3107 42.349 3 Median 1.4212 1.4308 12.394 2 0 Median 0.82925 0.69811 NaN 1 0 Median 37329000 16754000 20576000 34262000 15034000 19228000 3067300 1719300 1348000 5543 1643 5675 14529;14530;14531 22656;22657;22658;22659;22660;22661;22662 22657 1423 7 GVEGYGNDQTYFEEIK EDEGLLTTDISIDLKGVEGYGNDQTYFEEI VEGYGNDQTYFEEIKQFYYRDEFSHQVQEW K G V I K Q 0 0 1 1 0 1 3 3 0 1 0 1 0 1 0 0 1 0 2 1 0 0 16 0 1847.8214 Q7KZ85 Q7KZ85 675 690 SUPT6H Transcription elongation factor SPT6 yes yes 2 1.9677E-06 86.911 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4690400 0 4690400 4690400 0 4690400 0 0 0 5544 1870 5676 14532 22663 22663 1 GVEICIATPGR YGGAPKGPQIRDLERGVEICIATPGRLIDF DLERGVEICIATPGRLIDFLECGKTNLRRT R G V G R L 1 1 0 0 1 0 1 2 0 2 0 0 0 0 1 0 1 0 0 1 0 0 11 0 1171.6019 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3KRZ1;J3QSF1;Q59F66;Q92841;B4DZQ7 B4DN41 206 216 DDX5;DKFZp686J01190;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 2 0.00045134 81.525 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42788000 0 42788000 38841000 0 38841000 3947200 0 3947200 5545 1009;1801 5677 14533;14534;14535;14536 22664;22665;22666;22667 22666 4 GVEITGFPEAQALGLEVFHAGTALK TVVMASKGYPGDYTKGVEITGFPEAQALGL QALGLEVFHAGTALKNGKVVTHGGRVLAVT K G V L K N 4 0 0 0 0 1 3 4 1 1 3 1 0 2 1 0 2 0 0 2 0 0 25 0 2554.3431 Q3B7A7;Q59HH3;P22102 Q3B7A7 351 375 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 5.9735E-32 115.11 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57560000 7435800 50125000 57560000 7435800 50125000 0 0 0 5546 1507 5678 14537;14538;14539;14540;14541 22668;22669;22670;22671;22672;22673;22674 22670 7 GVEKPPHLAALILAR RPPKLQRNSRGGQGRGVEKPPHLAALILAR GVEKPPHLAALILARGGSKGIPLKNIKHLA R G V A R G 3 1 0 0 0 0 1 1 1 1 3 1 0 0 2 0 0 0 0 1 0 0 15 1 1583.9511 Q53GF0;Q8NFW8;F5H296 Q53GF0 38 52 CMAS N-acylneuraminate cytidylyltransferase yes no 3 0.037219 39.163 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2018000 0 2018000 0 0 0 2018000 0 2018000 5547 1788 5679 14542;14543 22675;22676 22675 2 GVENPAVQESNQK PLIVTPDCQEKTSPKGVENPAVQESNQKML PKGVENPAVQESNQKMLGPPLEVLKTLASK K G V Q K M 1 0 2 0 0 2 2 1 0 0 0 1 0 0 1 1 0 0 0 2 0 0 13 0 1398.6739 Q96GX5;A0A087WUU7 Q96GX5 622 634 MASTL Serine/threonine-protein kinase greatwall yes no 2 0.0053372 57.348 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5548 1969 5680 14544 22677 22677 1 GVESVFDIMEMEDEER LPHFTSEHIKRCTDKGVESVFDIMEMEDEE VESVFDIMEMEDEERNALLQLTDSQIADVA K G V E R N 0 1 0 2 0 0 5 1 0 1 0 0 2 1 0 1 0 0 0 2 0 0 16 0 1913.8023 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5;Q7L5W4;Q9P172 O75643 1978 1993 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0015247 45.879 2 2.3131 2.3331 16.835 2 Median 2.3131 2.3331 16.835 2 0 Median NaN NaN NaN 0 0 Median 28597000 7544700 21052000 28597000 7544700 21052000 0 0 0 5549 1411 5681 14545;14546 22678;22679 22678 1089;1090 2 GVETIANDVVSLATK PAGLITPIVFNAHIKGVETIANDVVSLATK GVETIANDVVSLATKAREGKLQPH______ K G V T K A 2 0 1 1 0 0 1 1 0 1 1 1 0 0 0 1 2 0 0 3 0 0 15 0 1515.8144 Q01991;B4DS43;B4DLQ2;H0YDD4;E9PEJ4;B4DJX1;Q86YI5;A0A024R3D8;P10515 Q01991 197 211 DLAT Acetyltransferase component of pyruvate dehydrogenase complex;Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes no 2 0.0054865 55.04 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4093000 0 4093000 4093000 0 4093000 0 0 0 5550 134 5682 14547;14548 22680;22681 22681 2 GVFVQSVLPYFVATK VDFFSQCLHEEYRSKGVFVQSVLPYFVATK GVFVQSVLPYFVATKLAKIRKPTLDKPSPE K G V T K L 1 0 0 0 0 1 0 1 0 0 1 1 0 2 1 1 1 0 1 4 0 0 15 0 1653.913 B4DWS6;B3KQJ0;D3DR22;Q53GQ0;A0A1B0GV93 B4DWS6 216 230 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 2 0.0043571 57.836 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3361500 0 3361500 3361500 0 3361500 0 0 0 5551 928 5683 14549;14550 22682;22683 22683 2 GVGAEPLLPWNR WRGPPPLFQQQRFDRGVGAEPLLPWNRMLQ FDRGVGAEPLLPWNRMLQTQNAAFQPNQYQ R G V N R M 1 1 1 0 0 0 1 2 0 0 2 0 0 0 2 0 0 1 0 1 0 0 12 0 1307.6986 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 808 819 XRN2 5-3 exoribonuclease 2 yes no 2 0.0077982 57.859 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3917200 3917200 0 3917200 3917200 0 0 0 0 5552 903 5684 14551 22684 22684 1 GVGASGSFR SIKRLVTTGVLKQTKGVGASGSFRLAKSDE VLKQTKGVGASGSFRLAKSDEPKKSVAFKK K G V F R L 1 1 0 0 0 0 0 3 0 0 0 0 0 1 0 2 0 0 0 1 0 0 9 0 836.41407 P07305 P07305 86 94 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.0013285 86.833 1 1 0.78944 0.77075 100.89 2 Median 1.3508 1.5731 NaN 1 0 Median 0.46138 0.37764 NaN 1 0 Median 204460000 91993000 112470000 188120000 80858000 107260000 16348000 11135000 5212400 5553 1451 5685 14552;14553 22685;22686;22687;22688 22685 4 GVGLLNTGSYYEHVK VDHLLLRLKCDSAFRGVGLLNTGSYYEHVK GVGLLNTGSYYEHVKISAPNEFDVMFKLEV R G V V K I 0 0 1 0 0 0 1 3 1 0 2 1 0 0 0 1 1 0 2 2 0 0 15 0 1635.8257 Q8N884 Q8N884 205 219 MB21D1 Cyclic GMP-AMP synthase yes yes 2;3 1.6657E-07 101.62 4 4 1.5894 1.3313 12.405 8 Median 1.4988 1.5806 12.032 4 0 Median 1.6052 1.2897 3.2242 4 0 Median 385720000 149480000 236240000 279580000 109660000 169930000 106130000 39822000 66312000 5554 1914 5686 14554;14555;14556;14557;14558;14559;14560;14561 22689;22690;22691;22692;22693;22694;22695;22696;22697;22698;22699;22700 22694 12 GVIDLIFEK KQVTQLAIDTEERLKGVIDLIFEKAISEPN TEERLKGVIDLIFEKAISEPNFSVAYANMC K G V E K A 0 0 0 1 0 0 1 1 0 2 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1032.5855 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 633 641 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.010772 58.981 1 1.5127 1.5299 NaN 1 Median 1.5127 1.5299 NaN 1 0 Median NaN NaN NaN 0 0 Median 8897900 3668900 5229000 8897900 3668900 5229000 0 0 0 5555 896 5687 14562 22701 22701 1 GVIFYLR PAVPQAPVQGEDYGKGVIFYLRDKVVVGIV VQGEDYGKGVIFYLRDKVVVGIVLWNIFNR K G V L R D 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 1 0 0 7 0 866.50142 O95831;A0A140VK04;E9PMA0 O95831 563 569 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 0.053677 56.51 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4403400 4403400 0 4403400 4403400 0 0 0 0 5556 1431 5688 14563 22702 22702 1 GVLANALAGR TPEITVSIIKELNRRGVLANALAGRDEKEI ELNRRGVLANALAGRDEKEISHVLNFLIRN R G V G R D 3 1 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 940.54541 Q8TED0;H0Y8P4 Q8TED0 404 413 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 1.3907E-05 102.3 2 1 0.9623 1.0816 8.1413 3 Plateau 0.95729 1.076 5.2165 2 0 Median 1.1376 0.94886 NaN 1 0 Median 116230000 54317000 61909000 109600000 50772000 58833000 6620700 3545500 3075200 5557 1936 5689 14564;14565;14566 22703;22704;22705 22704 3 GVLANALAGRDEK TPEITVSIIKELNRRGVLANALAGRDEKEI RRGVLANALAGRDEKEISHVLNFLIRNLSQ R G V E K E 3 1 1 1 0 0 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 13 1 1312.7099 Q8TED0;H0Y8P4 Q8TED0 404 416 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.00064108 76.655 2 1.2473 1.0461 2.5456 2 Median NaN NaN NaN 0 0 Median 1.2473 1.0461 2.5456 2 0 Median 7213100 3092400 4120700 0 0 0 7213100 3092400 4120700 5558 1936 5690 14567;14568 22706;22707 22706 2 GVLHTFSPSPK QASSQLSRGSATTPRGVLHTFSPSPKLQNS TTPRGVLHTFSPSPKLQNSASATALVSRTG R G V P K L 0 0 0 0 0 0 0 1 1 0 1 1 0 1 2 2 1 0 0 1 0 0 11 0 1168.6241 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 540 550 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.00034828 85.533 1 0.85945 0.85802 NaN 1 Median 0.85945 0.85802 NaN 1 0 Median NaN NaN NaN 0 0 Median 15039000 9034000 6005300 15039000 9034000 6005300 0 0 0 5559 229 5691 14569 22708 22708 1 GVLLFGPPGTGK LHPERFVNLGIEPPKGVLLFGPPGTGKTLC PPKGVLLFGPPGTGKTLCARAVANRTDACF K G V G K T 0 0 0 0 0 0 0 4 0 0 2 1 0 1 2 0 1 0 0 1 0 0 12 0 1141.6495 A0A140VK70;P35998;Q75L23 A0A140VK70 211 222 PSMC2 26S protease regulatory subunit 7 yes no 2 0.0002356 73.985 2 2.4801 2.5628 7.741 2 Median 2.4801 2.5628 7.741 2 0 Median NaN NaN NaN 0 0 Median 45962000 15075000 30887000 45962000 15075000 30887000 0 0 0 5560 620 5692 14570;14571 22709;22710;22711;22712 22709 4 GVLLTDGSEK MSALQRVLYRHMQAKGVLLTDGSEKDKKGK HMQAKGVLLTDGSEKDKKGKGGTKTLMNTI K G V E K D 0 0 0 1 0 0 1 2 0 0 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1017.5342 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8;B3KNW7 A7E2E1 1015 1024 SMARCA4 Transcription activator BRG1 yes no 2 0.0022766 69.825 1 1.7237 1.4144 NaN 1 Median NaN NaN NaN 0 0 Median 1.7237 1.4144 NaN 1 0 Median 5156000 2054100 3101900 0 0 0 5156000 2054100 3101900 5561 695 5693 14572 22713;22714 22713 2 GVLLYGPPGCGK KKHLFENSRLLQPPKGVLLYGPPGCGKTLI PPKGVLLYGPPGCGKTLIAKATAKEAGCRF K G V G K T 0 0 0 0 1 0 0 4 0 0 2 1 0 0 2 0 0 0 1 1 0 0 12 0 1216.6274 Q8NBU5;B4E2J1 Q8NBU5 128 139 ATAD1 ATPase family AAA domain-containing protein 1 yes no 2 0.00018978 76.679 2 1.0225 1.0203 34.553 2 Median 1.0225 1.0203 34.553 2 0 Median NaN NaN NaN 0 0 Median 32975000 14896000 18079000 32975000 14896000 18079000 0 0 0 5562 1920 5694 14573;14574 22715;22716 22715 2 GVLLYGPPGTGK KQPELFKSYGIPAPRGVLLYGPPGTGKTMI APRGVLLYGPPGTGKTMIARAVANEVGAYV R G V G K T 0 0 0 0 0 0 0 4 0 0 2 1 0 0 2 0 1 0 1 1 0 0 12 0 1157.6445 Q8NB90;Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QQM1;J3QRW1;J3QRR3 Q8NB90 389 400 SPATA5;PSMC5 Spermatogenesis-associated protein 5;26S protease regulatory subunit 8 no no 2 1.9348E-05 103.7 2 1.8273 1.9038 10.314 2 Median 1.8273 1.9038 10.314 2 0 Median NaN NaN NaN 0 0 Median 41304000 15679000 25625000 41304000 15679000 25625000 0 0 0 5563 1919;608 5695 14575;14576 22717;22718;22719;22720;22721 22717 5 GVLMYGPPGCGK THFELYKQIGIDPPRGVLMYGPPGCGKTML PPRGVLMYGPPGCGKTMLAKAVAHHTTAAF R G V G K T 0 0 0 0 1 0 0 4 0 0 1 1 1 0 2 0 0 0 1 1 0 0 12 0 1234.5838 A8K2M0;P43686 A8K2M0 201 212 PSMC4 26S protease regulatory subunit 6B yes no 2 0.011313 48.794 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5564 710 5696 14577 22722 22722 545 1 GVLSTLIAGPVVEISHQLR ITAVQSRHTDTPVHRGVLSTLIAGPVVEIS TLIAGPVVEISHQLRKVSDVEELTPPEHLS R G V L R K 1 1 0 0 0 1 1 2 1 2 3 0 0 0 1 2 1 0 0 3 0 0 19 0 1988.1419 Q86XI2;B3KRQ2;B4DHE5 Q86XI2 1006 1024 NCAPG2 Condensin-2 complex subunit G2 yes no 2;3 3.6352E-07 70.942 6 2 1.05 1.0554 34.174 6 Median 0.95809 0.98032 17.261 4 0 Median 1.9632 1.696 11.567 2 0 Median 131360000 47028000 84336000 50828000 20014000 30814000 80537000 27014000 53523000 5565 1887 5697 14578;14579;14580;14581;14582;14583;14584;14585 22723;22724;22725;22726;22727;22728;22729;22730;22731;22732;22733;22734;22735;22736;22737;22738;22739;22740 22737 18 GVNLDPLGK LKTRRRDLAQALINRGVNLDPLGKWSKTGL QALINRGVNLDPLGKWSKTGLVVYDSSVPI R G V G K W 0 0 1 1 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 911.50763 P46087;F5GYR3 P46087 332 340 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.0064086 64.265 2 2 1.1088 1.0487 17.13 4 Median 1.0722 1.2193 1.6738 2 0 Median 1.1348 0.90684 0.90732 2 0 Median 331890000 163270000 168620000 294500000 145540000 148960000 37392000 17735000 19657000 5566 1570 5698 14586;14587;14588;14589 22741;22742;22743;22744;22745;22746;22747;22748 22741 8 GVNLPGAAVDLPAVSEK LVTEVENGGSLGSKKGVNLPGAAVDLPAVS NLPGAAVDLPAVSEKDIQDLKFGVEQDVDM K G V E K D 3 0 1 1 0 0 1 2 0 0 2 1 0 0 2 1 0 0 0 3 0 0 17 0 1635.8832 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34;Q8WUW7;Q504U3;H3BR70 V9HWB8 208 224 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 6.862E-13 121.04 2 2 3.2942 3.7449 38.332 4 Linear 3.2515 3.6676 0.33885 2 0 Median 2.3848 1.9021 9.8445 2 0 Median 285340000 70874000 214470000 244130000 58108000 186030000 41207000 12766000 28441000 5567 1481 5699 14590;14591;14592;14593 22749;22750;22751;22752;22753;22754 22750 5 GVNLVINYDFPTSSVEYIHR VLICTALLARGIDFKGVNLVINYDFPTSSV INYDFPTSSVEYIHRIGRTGRAGNKGKAIT K G V H R I 0 1 2 1 0 0 1 1 1 2 1 0 0 1 1 2 1 0 2 3 0 0 20 0 2322.1644 Q9Y2R4;Q59H21;B3KM65 Q9Y2R4 480 499 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 3 0.04908 11.249 1 1.0696 0.92035 NaN 1 Median NaN NaN NaN 0 0 Median 1.0696 0.92035 NaN 1 0 Median 7531500 3430800 4100600 0 0 0 7531500 3430800 4100600 5568 2126 5700 14594 22755 22755 1 GVNTFSPEGR ______________________________ SEYDRGVNTFSPEGRLFQVEYAIEAIKLAS R G V G R L 0 1 1 0 0 0 1 2 0 0 0 0 0 1 1 1 1 0 0 1 0 0 10 0 1062.5094 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 11 20 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 2 0.00027702 93.649 2 2 1.7794 1.7649 21.741 4 Median 1.9397 2.0642 2.8021 2 0 Median 1.6246 1.4364 9.7763 2 0 Median 65951000 23622000 42329000 61283000 21636000 39648000 4667500 1986400 2681200 5569 595 5701 14595;14596;14597;14598 22756;22757;22758;22759;22760;22761 22758 6 GVPQQIEVAR PPPNSDPNLRRFTIRGVPQQIEVARQLIDE RFTIRGVPQQIEVARQLIDEKVGGTNLGAP R G V A R Q 1 1 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 10 0 1095.6037 A0A024R8A7;Q96I24 A0A024R8A7 409 418 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 2 0.0011713 75.043 2 1.6386 1.6762 NaN 1 Median 1.6386 1.6762 NaN 1 0 Median NaN NaN NaN 0 0 Median 64871000 13446000 51425000 64871000 13446000 51425000 0 0 0 5570 245 5702 14599;14600 22762;22763 22762 2 GVPTGFILPIR MAKTHLSLSHNPEQKGVPTGFILPIRDIRA PEQKGVPTGFILPIRDIRASVGAGFLYPLV K G V I R D 0 1 0 0 0 0 0 2 0 2 1 0 0 1 2 0 1 0 0 1 0 0 11 0 1168.6968 A0A024R652;P11586;F5H2F4;B7Z809;V9GYY3 A0A024R652 879 889 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0051516 56.729 2 2 1.3046 1.2116 42.744 4 Median 1.6905 1.7259 6.9894 2 0 Median 0.94066 0.83172 10.144 2 0 Median 32487000 12331000 20157000 28001000 10181000 17820000 4486200 2149800 2336400 5571 196 5703 14601;14602;14603;14604 22764;22765;22766;22767 22764 4 GVPVSEAECTAMGLR GTVAQLWIYPVKSCKGVPVSEAECTAMGLR GVPVSEAECTAMGLRSGNLRDRFWLVINQE K G V L R S 2 1 0 0 1 0 2 2 0 0 1 0 1 0 1 1 1 0 0 2 0 0 15 0 1575.7385 Q5VT66;F6V6Z1;Q969Z3 Q5VT66 71 85 MARC1;MARC2 Mitochondrial amidoxime-reducing component 1;Mitochondrial amidoxime reducing component 2 no no 2 0.0032703 51.013 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5572 1831;1956 5704 14605 22768 22768 1689 1 GVQDIVVGEGTHFLIPWVQK NVDAGHRAVIFDRFRGVQDIVVGEGTHFLI VVGEGTHFLIPWVQKLIIFDCRSRPRNVPV R G V Q K L 0 0 0 1 0 2 1 3 1 2 1 1 0 1 1 0 1 1 0 4 0 0 20 0 2221.1895 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 44 63 HEL-S-54e;PHB Prohibitin yes no 2;3 2.1371E-06 52.318 3 2 1.1993 1.351 39.557 5 Median 1.1877 1.3032 4.6367 3 0 Plateau 3.004 2.4914 30.178 2 0 Median 208320000 81910000 126410000 122230000 56823000 65403000 86095000 25087000 61008000 5573 730 5705 14606;14607;14608;14609;14610 22769;22770;22771;22772;22773;22774;22775 22774 7 GVQLLLSER LPSVRQEVKEILLRKGVQLLLSERVSNLEE EILLRKGVQLLLSERVSNLEELPLNEYREY K G V E R V 0 1 0 0 0 1 1 1 0 0 3 0 0 0 0 1 0 0 0 1 0 0 9 0 1013.5869 Q9BRQ8 Q9BRQ8 200 208 AIFM2 Apoptosis-inducing factor 2 yes yes 2 0.042159 49.554 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4588900 0 4588900 4588900 0 4588900 0 0 0 5574 1998 5706 14611 22776 22776 1 GVQLQTHPNVDK KYGRIRLHVENEDKKGVQLQTHPNVDKKLF DKKGVQLQTHPNVDKKLFTAESLIGLKNPE K G V D K K 0 0 1 1 0 2 0 1 1 0 1 1 0 0 1 0 1 0 0 2 0 0 12 0 1334.6943 B0YIW5;Q6MZV5;B0YIW6;P48444 B0YIW5 324 335 ARCN1;DKFZp686M09245 Coatomer subunit delta yes no 2 8.9426E-14 128.81 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3803000 0 3803000 3803000 0 3803000 0 0 0 5575 810 5707 14612 22777 22777 1 GVQYLNEIK GPDGTGPNILTDITKGVQYLNEIKDSVVAG LTDITKGVQYLNEIKDSVVAGFQWATKEGA K G V I K D 0 0 1 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1062.571 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 668 676 EEF2 Elongation factor 2 yes no 2 1.6045E-05 121.62 2 2 3.0688 3.4263 43.146 3 Median 3.1427 3.5254 4.0299 2 0 Median 2.0443 1.6725 NaN 1 0 Median 131520000 32759000 98757000 123090000 31163000 91932000 8421100 1596500 6824600 5576 1478 5708 14613;14614;14615;14616 22778;22779;22780;22781 22779 4 GVSAVVVGADR TLITDSMVAAAMAHRGVSAVVVGADRVVAN MAHRGVSAVVVGADRVVANGDTANKVGTYQ R G V D R V 2 1 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 4 0 0 11 0 1028.5615 Q9BV20 Q9BV20 239 249 MRI1 Methylthioribose-1-phosphate isomerase yes yes 2 0.001131 85.533 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7888100 0 7888100 7888100 0 7888100 0 0 0 5577 2006 5709 14617 22782 22782 1 GVSFTFGADVVSK SDPDKDVQGWGENDRGVSFTFGADVVSKFL DRGVSFTFGADVVSKFLNRHDLDLICRAHQ R G V S K F 1 0 0 1 0 0 0 2 0 0 0 1 0 2 0 2 1 0 0 3 0 0 13 0 1312.6663 V9HW04;P62140;B4DJ75;B7ZB67 V9HW04 221 233 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 2 1.8152E-14 137.17 2 2 1.517 1.4714 18.487 4 Median 1.0968 1.2451 2.8894 2 0 Median 2.061 1.7126 0.72866 2 0 Median 389160000 171770000 217390000 303200000 145060000 158140000 85955000 26704000 59251000 5578 1633 5710 14618;14619;14620;14621 22783;22784;22785;22786;22787;22788;22789;22790 22784 8 GVSFTFGAEVVAK SDPDKDVQGWGENDRGVSFTFGAEVVAKFL DRGVSFTFGAEVVAKFLHKHDLDLICRAHQ R G V A K F 2 0 0 0 0 0 1 2 0 0 0 1 0 2 0 1 1 0 0 3 0 0 13 0 1310.6871 P62136;A0A140VJS9;B3KXM2;E9PMD7;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;B4DNE3 P62136 222 234 PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2 0.00013042 90.05 3 1.7495 1.77 NaN 1 Median 1.7495 1.77 NaN 1 0 Median NaN NaN NaN 0 0 Median 19508000 4499100 15009000 19508000 4499100 15009000 0 0 0 5579 1632;343 5711 14622;14623;14624 22791;22792;22793 22792 3 GVSFYEVPPHLFAVADTVYR RDLQIYSRQHMERYRGVSFYEVPPHLFAVA EVPPHLFAVADTVYRALRTERRDQAVMISG R G V Y R A 2 1 0 1 0 0 1 1 1 0 1 0 0 2 2 1 1 0 2 4 0 0 20 0 2266.1423 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6;I3L168;I3L3F5 F5H6E2 82 101 MYO1C Unconventional myosin-Ic yes no 3 9.1232E-07 63.184 2 1 1.1548 1.1478 24.392 3 Median 1.1272 1.1279 2.4706 2 0 Median 2.0077 1.719 NaN 1 0 Median 34294000 15569000 18725000 25638000 12890000 12748000 8656000 2679200 5976800 5580 1088 5712 14625;14626;14627 22794;22795;22796;22797;22798 22795 4 GVSTLCEEHVEPETTLPAR APEMPLVKKKKKKKKGVSTLCEEHVEPETT LCEEHVEPETTLPARRTEKSPSLRKQVFGH K G V A R R 1 1 0 0 1 0 4 1 1 0 2 0 0 0 2 1 3 0 0 2 0 0 19 0 2124.0157 Q1ED39 Q1ED39 73 91 KNOP1 Lysine-rich nucleolar protein 1 yes yes 3 9.6526E-05 54.103 2 2 1.7836 1.5289 4.7682 2 Median NaN NaN NaN 0 0 Median 1.7836 1.5289 4.7682 2 0 Median 26527000 20898000 5629400 17529000 17529000 0 8998400 3368900 5629400 5581 1775 5713 14628;14629;14630;14631 22799;22800;22801;22802 22800 4 GVTFLFPIQAK NFPISEETIKLLKGRGVTFLFPIQAKTFHH LKGRGVTFLFPIQAKTFHHVYSGKDLIAQA R G V A K T 1 0 0 0 0 1 0 1 0 1 1 1 0 2 1 0 1 0 0 1 0 0 11 0 1219.6965 Q9NR30 Q9NR30 205 215 DDX21 Nucleolar RNA helicase 2 yes yes 2 1.4299E-08 123.16 2 2 1.1689 1.3329 14.006 4 Linear 1.1238 1.2951 5.237 2 0 Median 1.1973 1.0225 1.6081 2 0 Median 575800000 269970000 305830000 413980000 193850000 220130000 161820000 76119000 85701000 5582 2065 5714 14632;14633;14634;14635 22803;22804;22805;22806;22807;22808;22809;22810 22804 8 GVTFNVTTVDTK NCPFSQRLFMVLWLKGVTFNVTTVDTKRRT WLKGVTFNVTTVDTKRRTETVQKLCPGGQL K G V T K R 0 0 1 1 0 0 0 1 0 0 0 1 0 1 0 0 4 0 0 3 0 0 12 0 1280.6612 Q5SRT3;Q53FB0;O00299 Q5SRT3 38 49 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 4.3216E-13 120.65 1 2 1.3988 1.0929 6.9438 2 Median NaN NaN NaN 0 0 Median 1.3988 1.0929 6.9438 2 0 Median 31054000 3210600 27844000 23560000 0 23560000 7494500 3210600 4283900 5583 1362 5715 14636;14637;14638 22811;22812;22813;22814 22811 4 GVTIASGGVLPNIHPELLAK LLAVANDEELNQLLKGVTIASGGVLPNIHP SGGVLPNIHPELLAKKRGSKGKLEAIITPP K G V A K K 2 0 1 0 0 0 1 3 1 2 3 1 0 0 2 1 1 0 0 2 0 0 20 0 1985.131 O75367;D6RCF2 O75367 97 116 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 1.5818E-124 300.51 4 5 1.0675 1.2518 12.284 6 Median 1.0598 1.2656 1.3055 4 0 Median 1.1339 1.0005 4.0057 2 0 Median 9960300000 4461000000 5499300000 6891300000 3350500000 3540800000 3069000000 1110500000 1958500000 5584 1401 5716 14639;14640;14641;14642;14643;14644;14645;14646;14647 22815;22816;22817;22818;22819;22820;22821;22822;22823;22824;22825;22826;22827;22828;22829 22822 15 GVTIIGPATVGGIK PEALTRKLIKKADQKGVTIIGPATVGGIKP KGVTIIGPATVGGIKPGCFKIGNTGGMLDN K G V I K P 1 0 0 0 0 0 0 4 0 3 0 1 0 0 1 0 2 0 0 2 0 0 14 0 1281.7656 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 607 620 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.00018967 70.808 2 1.9974 2.0312 10.829 2 Median 1.9974 2.0312 10.829 2 0 Median NaN NaN NaN 0 0 Median 27872000 11224000 16648000 27872000 11224000 16648000 0 0 0 5585 89 5717 14648;14649 22830;22831 22831 2 GVTIKPTVDDD VEKHWRLIGWGQIRRGVTIKPTVDDD____ QIRRGVTIKPTVDDD_______________ R G V D D - 0 0 0 3 0 0 0 1 0 1 0 1 0 0 1 0 2 0 0 2 0 0 11 1 1158.5768 P41091;Q2VIR3 P41091 462 472 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 4.9941E-22 164.68 1 1.6227 1.638 NaN 1 Median 1.6227 1.638 NaN 1 0 Median NaN NaN NaN 0 0 Median 28375000 9247100 19128000 28375000 9247100 19128000 0 0 0 5586 1559 5718 14650 22832 22832 1 GVTIPYRPK ICVVMLETLSQSPPKGVTIPYRPKPSSSPV SQSPPKGVTIPYRPKPSSSPVIFAGGQLTK K G V P K P 0 1 0 0 0 0 0 1 0 1 0 1 0 0 2 0 1 0 1 1 0 0 9 1 1029.5971 H3BRU6;F8VZX2;B4DRD7;F8VRH0;Q15366;B4DLC0;H3BSS4 Q15366 158 166 PCBP2 Poly(rC)-binding protein 2 no no 2 0.032908 65.038 2 2.4066 2.8696 9.9614 2 Median 2.4066 2.8696 9.9614 2 0 Median NaN NaN NaN 0 0 Median 237400000 72923000 164470000 237400000 72923000 164470000 0 0 0 5587 1263;1760 5719 14651;14652 22833;22834 22834 2 GVTLGFR ATVRTICSHVQNMIKGVTLGFRYKMRSVYA SHVQNMIKGVTLGFRYKMRSVYAHFPINVV K G V F R Y 0 1 0 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 748.42317 Q53Z07;P32969;E7ESE0;D6RAN4;H0Y9V9;B4E1M5;B4DLV8;Q2NKY6 Q53Z07 83 89 RPL9 60S ribosomal protein L9 yes no 2 0.0012452 137.44 2 2 0.96657 0.95327 10.3 4 Median 0.89333 1.051 3.3269 2 0 Median 1.0244 0.88206 0.50864 2 0 Median 1053800000 560690000 493140000 993050000 531530000 461520000 60774000 29153000 31621000 5588 1537 5720 14653;14654;14655;14656 22835;22836;22837;22838;22839;22840;22841 22838 7 GVTNDQVDPSVDVLK CLAPFMKHPLKIVLRGVTNDQVDPSVDVLK GVTNDQVDPSVDVLKATALPLLKQFGIDGE R G V L K A 0 0 1 3 0 1 0 1 0 0 1 1 0 0 1 1 1 0 0 4 0 0 15 0 1584.7995 Q9Y2P8 Q9Y2P8 119 133 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 1.2034E-10 122.18 2 2 1.1041 1.0592 6.55 4 Median 0.88043 0.9927 4.9489 2 0 Median 1.3575 1.0989 0.9824 2 0 Median 257540000 129940000 127600000 207250000 109120000 98134000 50290000 20824000 29466000 5589 2125 5721 14657;14658;14659;14660 22842;22843;22844;22845;22846;22847;22848;22849;22850;22851 22848 10 GVTSILPVLR ESKGEHVPGFCLPKKGVTSILPVLREGVLT CLPKKGVTSILPVLREGVLTGSPEQKEEAA K G V L R E 0 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 1 0 0 2 0 0 10 0 1053.6546 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2260 2269 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0051169 60.59 2 1.9224 1.976 2.7401 2 Median 1.9224 1.976 2.7401 2 0 Median NaN NaN NaN 0 0 Median 21273000 7462400 13811000 21273000 7462400 13811000 0 0 0 5590 1205 5722 14661;14662 22852;22853;22854;22855 22854 4 GVTYLFPIQVK NFPISEETIKLLKGRGVTYLFPIQVKTFGP LKGRGVTYLFPIQVKTFGPVYEGKDLIAQA R G V V K T 0 0 0 0 0 1 0 1 0 1 1 1 0 1 1 0 1 0 1 2 0 0 11 0 1263.7227 B4DW97;A0A087WVC1;Q9BQ39;B4DED6;Q53FI9 B4DW97 156 166 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 0.0091505 49.536 2 1.3307 1.0566 3.7174 2 Median NaN NaN NaN 0 0 Median 1.3307 1.0566 3.7174 2 0 Median 6341700 2605100 3736600 0 0 0 6341700 2605100 3736600 5591 416 5723 14663;14664 22856;22857 22857 2 GVVDHLLLR KLSRDDISTAAGMVKGVVDHLLLRLKCDSA AAGMVKGVVDHLLLRLKCDSAFRGVGLLNT K G V L R L 0 1 0 1 0 0 0 1 1 0 3 0 0 0 0 0 0 0 0 2 0 0 9 0 1020.608 Q8N884 Q8N884 188 196 MB21D1 Cyclic GMP-AMP synthase yes yes 2;3 1.346E-11 152.63 4 3 1.4003 1.3205 9.9944 7 Median 1.2995 1.3659 13.459 4 0 Median 1.5812 1.3163 3.7426 3 0 Median 255140000 106360000 148790000 205250000 87288000 117960000 49890000 19067000 30823000 5592 1914 5724 14665;14666;14667;14668;14669;14670;14671 22858;22859;22860;22861;22862;22863;22864;22865;22866;22867;22868;22869 22865 12 GVVDSEDLPLNISR DSCDELIPEYLNFIRGVVDSEDLPLNISRE RGVVDSEDLPLNISREMLQQSKILKVIRKN R G V S R E 0 1 1 2 0 0 1 1 0 1 2 0 0 0 1 2 0 0 0 2 0 0 14 0 1512.7784 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 B4DMA2 341 354 HSP90AB1;EL52;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha no no 2 1.7289E-37 165.07 2 2 1.6616 1.6739 43.836 4 Median 2.0867 2.4524 1.2667 2 0 Median 1.3228 1.1479 0.59584 2 0 Median 1064600000 381940000 682650000 898950000 308950000 590010000 165640000 72995000 92643000 5593 379;1348 5725 14672;14673;14674;14675 22870;22871;22872;22873;22874;22875;22876;22877;22878 22871 9 GVVEVTHDLQK MGKMQKKAVAISLPKGVVEVTHDLQKHLAG SLPKGVVEVTHDLQKHLAGLGLTEAIDKNK K G V Q K H 0 0 0 1 0 1 1 1 1 0 1 1 0 0 0 0 1 0 0 3 0 0 11 0 1223.651 E9PKH2;B4DN87;A8K259;A0A024R5K8;P50454 E9PKH2 92 102 SERPINH1 Serpin H1 yes no 2 0.00043595 78.655 1 1.1858 1.2116 NaN 1 Median 1.1858 1.2116 NaN 1 0 Median NaN NaN NaN 0 0 Median 17791000 10891000 6899600 17791000 10891000 6899600 0 0 0 5594 185 5726 14676 22879 22879 1 GVVGPELYGR PHSPESLSVDEAVRRGVVGPELYGRLKRAE EAVRRGVVGPELYGRLKRAEGAIAGFRDPF R G V G R L 0 1 0 0 0 0 1 3 0 0 1 0 0 0 1 0 0 0 1 2 0 0 10 0 1045.5556 A0A075B730;A0A087X1U6;P58107 A0A075B730 966 975 EPPK1 Epiplakin no no 2 1.1985E-05 103.74 2 1.8961 1.9601 9.0118 2 Median 1.8961 1.9601 9.0118 2 0 Median NaN NaN NaN 0 0 Median 41429000 14906000 26523000 41429000 14906000 26523000 0 0 0 5595 397;1622 5727 14677;14678 22880;22881;22882;22883 22880 4 GVVPVVMDCESTVQEK MAQPRCVQIQKAWLRGVVPVVMDCESTVQE VVPVVMDCESTVQEKALEFLDQLLLQNIRH R G V E K A 0 0 0 1 1 1 2 1 0 0 0 1 1 0 1 1 1 0 0 5 0 0 16 0 1775.8434 P42695;G3V1A9;E9PKK4 P42695 623 638 NCAPD3 Condensin-2 complex subunit D3 yes no 2 8.1551E-06 93.766 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4868100 4868100 0 4868100 4868100 0 0 0 0 5596 1565 5728 14679;14680;14681 22884;22885;22886 22886 1321 3 GVVQELQQAISK VVRIASLEVENQSLRGVVQELQQAISKLEA SLRGVVQELQQAISKLEARLNVLEKSSPGH R G V S K L 1 0 0 0 0 3 1 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1298.7194 D3DWK1;B2RAR6;E9PRY8;P29692;E9PK01;Q9BW34;A0A087X1X7;Q71RH4;Q9H7G6;E9PQ49;E9PI39;E9PMW7;E9PIZ1;E9PPR1;E9PL12;E9PL71;H0YCK7;E9PN91 D3DWK1 462 473 EEF1D Elongation factor 1-delta yes no 2 4.3358E-05 96.015 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8201100 0 8201100 8201100 0 8201100 0 0 0 5597 875 5729 14682 22887 22887 1 GVVQLFNAVQK QDKETERNLQRIATRGVVQLFNAVQKHQKN IATRGVVQLFNAVQKHQKNVDEKVKEAGSS R G V Q K H 1 0 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 0 0 3 0 0 11 0 1201.6819 Q9Y3B9;A8K201 Q9Y3B9 169 179 RRP15 RRP15-like protein yes no 2 1.9705E-31 186.13 2 2 1.0138 0.97622 1.5747 4 Median 0.87317 0.98844 1.0568 2 0 Median 1.1738 0.9654 0.87266 2 0 Median 288040000 145050000 142990000 220820000 114730000 106090000 67222000 30321000 36901000 5598 2134 5730 14683;14684;14685;14686 22888;22889;22890;22891;22892;22893 22891 6 GVVSGEVER SHLLETLLCKHPNMKGVVSGEVERLLFRSN KHPNMKGVVSGEVERLLFRSNISSKAQYYA K G V E R L 0 1 0 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 0 3 0 0 9 0 930.47706 B2R5U7;Q03701 B2R5U7 418 426 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.043141 40.778 1 1.1349 0.95052 NaN 1 Median NaN NaN NaN 0 0 Median 1.1349 0.95052 NaN 1 0 Median 3988300 1825400 2162900 0 0 0 3988300 1825400 2162900 5599 836;1683 5731 14687 22894 22894 1 GVVTLLSDYEVCK EPQLRQLGLPTALKRGVVTLLSDYEVCKEG KRGVVTLLSDYEVCKEGDVLTPEQARVLKL R G V C K E 0 0 0 1 1 0 1 1 0 0 2 1 0 0 0 1 1 0 1 3 0 0 13 0 1481.7436 A0A024RAE1;Q9UKD2 A0A024RAE1 165 177 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 6.7943E-09 140.07 2 2 1.1997 1.3437 17.081 4 Linear 1.2216 1.2803 4.3068 2 0 Median 1.1855 0.95555 0.99546 2 0 Median 48179000 22109000 26069000 38073000 17795000 20278000 10106000 4314600 5791300 5600 302 5732 14688;14689;14690;14691 22895;22896;22897;22898;22899;22900 22897 6 GVWSTLPVNEK IKSNNHENVSLAKAKGVWSTLPVNEKKLNL AKAKGVWSTLPVNEKKLNLAFRSARSVILI K G V E K K 0 0 1 0 0 0 1 1 0 0 1 1 0 0 1 1 1 1 0 2 0 0 11 0 1228.6452 J3QR07;Q96MU7 J3QR07 375 385 YTHDC1 YTH domain-containing protein 1 yes no 2 0.00033438 86.624 2 1 1.3612 1.1111 32.304 3 Median 1.0021 1.0316 45.282 2 0 Median 1.3612 1.1111 NaN 1 0 Median 26833000 12786000 14047000 24191000 11550000 12641000 2642000 1235800 1406200 5601 1337 5733 14692;14693;14694 22901;22902;22903 22901 3 GVYSEETLR TQALTAAIPPESLTRGVYSEETLRARFYAV PESLTRGVYSEETLRARFYAVQKLARRVAM R G V L R A 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 1 1 0 1 1 0 0 9 0 1052.5138 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 624 632 IMMT MICOS complex subunit MIC60 no no 2 0.00065244 96.253 2 0.96041 1.0886 5.9527 2 Median 0.96041 1.0886 5.9527 2 0 Median NaN NaN NaN 0 0 Median 120510000 61471000 59044000 120510000 61471000 59044000 0 0 0 5602 1774;1029;1128 5734 14695;14696 22904;22905;22906;22907 22906 4 GWAPVFLDR RMLGAQGRAVHQCDRGWAPVFLDREQSISL VHQCDRGWAPVFLDREQSISLMSVGFLLEK R G W D R E 1 1 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 1 0 1 0 0 9 0 1059.5502 Q2YS46;B2RDN3;Q9Y5Y2;H3BNF0;H3BNS4;H3BQR2;H3BRE1 Q2YS46 69 77 NUBP1;NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 0.034216 44.349 1 0.95645 1.0951 NaN 1 Median 0.95645 1.0951 NaN 1 0 Median NaN NaN NaN 0 0 Median 166460000 87992000 78465000 166460000 87992000 78465000 0 0 0 5603 888 5735 14697 22908 22908 1 GWEEALENVIK YLSKSGICSLHPLLRGWEEALENVIKSTKP PLLRGWEEALENVIKSTKPGKLIGVANQKM R G W I K S 1 0 1 0 0 0 3 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 11 0 1286.6507 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 639 649 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00022163 91.867 2 1.2531 1.01 14.6 2 Median NaN NaN NaN 0 0 Median 1.2531 1.01 14.6 2 0 Median 11423000 5035900 6387500 0 0 0 11423000 5035900 6387500 5604 897 5736 14698;14699 22909;22910;22911 22909 3 GWFDAEGQALDGVSISDLK TIIANPDIPEAYKLRGWFDAEGQALDGVSI AEGQALDGVSISDLKSGGVGGSNTNWKTLY R G W L K S 2 0 0 3 0 1 1 3 0 1 2 1 0 1 0 2 0 1 0 1 0 0 19 0 2006.9585 P27694;I3L4R8 P27694 413 431 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 5.3699E-08 89.507 1 1 0.41915 0.38332 42.764 2 Median 0.509 0.51867 NaN 1 0 Median 0.34517 0.2833 NaN 1 0 Median 17506000 11231000 6274700 12247000 7469800 4776800 5259400 3761500 1497900 5605 1525 5737 14700;14701 22912;22913;22914 22913 3 GWLFASCAK HGHTDIVLALDVFRKGWLFASCAKDQSVRI LDVFRKGWLFASCAKDQSVRIWRMNKAGQV K G W A K D 2 0 0 0 1 0 0 1 0 0 1 1 0 1 0 1 0 1 0 0 0 0 9 0 1038.4957 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 388 396 TBL3 Transducin beta-like protein 3 no no 2 0.014137 63.48 1 1 1.2749 1.0078 NaN 1 Median NaN NaN NaN 0 0 Median 1.2749 1.0078 NaN 1 0 Median 10425000 8524500 1900700 7226800 7226800 0 3198500 1297800 1900700 5606 1698;436 5738 14702;14703 22915;22916 22915 2 GWLYYEAGQR PRTKTKMSAAQALKKGWLYYEAGQRFLEVQ QALKKGWLYYEAGQRFLEVQYLTGGLIEPD K G W Q R F 1 1 0 0 0 1 1 2 0 0 1 0 0 0 0 0 0 1 2 0 0 0 10 0 1241.5829 Q15149;D3DWL0;Q96IE3 Q15149 4514 4523 PLEC;PLEC1 Plectin yes no 2 0.0005862 84.476 2 1 1.3079 1.3119 22.003 3 Median 1.2384 1.2443 7.4823 2 0 Median 2.0756 1.8012 NaN 1 0 Median 37231000 15748000 21483000 35080000 14868000 20212000 2151300 879700 1271600 5607 1754 5739 14704;14705;14706 22917;22918;22919;22920;22921 22917 5 GWNWGTVK THYRLELMEKDLCVKGWNWGTVKFGGQLLS EKDLCVKGWNWGTVKFGGQLLSFDIGDQPV K G W V K F 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 2 0 1 0 0 8 0 946.4661 A0A024R4Z6;Q08945;E9PMD4;Q59GH7;E9PPZ7 A0A024R4Z6 106 113 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0050709 91.626 1 2 0.84054 0.66415 5.5318 3 Median 0.57448 0.62938 NaN 1 0 Median 0.85262 0.6833 4.0204 2 0 Median 51439000 30346000 21093000 40867000 24776000 16091000 10572000 5570000 5002300 5608 167 5740 14707;14708;14709 22922;22923;22924 22922 3 GWPDSTNTWEPLQNLK YKVVKDMEYYLVKWKGWPDSTNTWEPLQNL WPDSTNTWEPLQNLKCPLLLQQFSNDKHNY K G W L K C 0 0 2 1 0 1 1 1 0 0 2 1 0 0 2 1 2 2 0 0 0 0 16 0 1884.9006 Q9H5I1;C9IYH9;C9JMB4;Q5JSS2 Q9H5I1 70 85 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 yes no 2 0.028468 32.859 1 2.2144 1.7207 NaN 1 Median NaN NaN NaN 0 0 Median 2.2144 1.7207 NaN 1 0 Median 3614900 1476000 2139000 0 0 0 3614900 1476000 2139000 5609 2036 5741 14710 22925 22925 1 GWSMSEQSEESVGGR TSVKSPKTVSPPIRKGWSMSEQSEESVGGR GWSMSEQSEESVGGRVAERKQVENAKASKK K G W G R V 0 1 0 0 0 1 3 3 0 0 0 0 1 0 0 4 0 1 0 1 0 0 15 0 1624.6787 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 454 468 LIMA1 LIM domain and actin-binding protein 1 yes no 2 1.396E-06 98.353 2 2.2705 2.2282 NaN 1 Median 2.2705 2.2282 NaN 1 0 Median NaN NaN NaN 0 0 Median 13808000 3995200 9813200 13808000 3995200 9813200 0 0 0 5610 1010 5742 14711;14712 22926;22927 22927 799 2 GYAFIEFASFEDAK ATFIKVPQNQNGKSKGYAFIEFASFEDAKE KGYAFIEFASFEDAKEALNSCNKREIEGRA K G Y A K E 3 0 0 1 0 0 2 1 0 1 0 1 0 3 0 1 0 0 1 0 0 0 14 0 1593.7351 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 447 460 NCL Nucleolin yes no 2 6.2213E-07 110.86 2 2 0.94572 0.89632 28.388 4 Median 1.0424 1.1465 0.53519 2 0 Median 0.86951 0.70122 0.43576 2 0 Median 143040000 70085000 72957000 97398000 46372000 51026000 45643000 23713000 21930000 5611 151 5743 14713;14714;14715;14716 22928;22929;22930;22931;22932;22933;22934;22935 22934 8 GYAFNHSADFETVR GRDITRYLIKLLLLRGYAFNHSADFETVRM RGYAFNHSADFETVRMIKEKLCYVGYNIEQ R G Y V R M 2 1 1 1 0 0 1 1 1 0 0 0 0 2 0 1 1 0 1 1 0 0 14 0 1612.727 B4DHK9;P61160;B4DWQ5;Q8IY98;F5H6T1 B4DHK9 149 162 ACTR2 Actin-related protein 2 yes no 3 4.624E-05 76.728 2 1 2.2539 2.0847 6.1469 2 Median 2.2086 2.1773 NaN 1 0 Median 2.3001 1.9961 NaN 1 0 Median 20707000 4584900 16122000 18773000 3904100 14869000 1934400 680800 1253600 5612 976 5744 14717;14718;14719 22936;22937;22938 22937 3 GYAFVEFESEDVAK TRFRLSRSKRTGNSKGYAFVEFESEDVAKI KGYAFVEFESEDVAKIVAETMNNYLFGERL K G Y A K I 2 0 0 1 0 0 3 1 0 0 0 1 0 2 0 1 0 0 1 2 0 0 14 0 1589.725 Q9BYG3;C9J6C5;B4DSM4 Q9BYG3 87 100 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 2.4053E-09 116.55 2 2 1.1571 1.226 7.3734 4 Linear 1.0639 1.1962 0.72176 2 0 Median 1.3113 1.0899 8.7146 2 0 Median 268960000 119420000 149540000 180620000 81152000 99468000 88335000 38267000 50068000 5613 2019 5745 14720;14721;14722;14723 22939;22940;22941;22942;22943;22944;22945;22946 22944 8 GYAFVHFETQEAADK NILSCKVVCDENGSKGYAFVHFETQEAADK GYAFVHFETQEAADKAIEKMNGMLLNDRKV K G Y D K A 3 0 0 1 0 1 2 1 1 0 0 1 0 2 0 0 1 0 1 1 0 0 15 0 1711.7842 B1ANR0;Q6IQ30;Q13310;H0Y5F5;H0YCC8;H0YEQ8 B1ANR0 139 153 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.00010473 83.045 1 1.8999 1.9043 NaN 1 Median 1.8999 1.9043 NaN 1 0 Median NaN NaN NaN 0 0 Median 13855000 4629100 9225600 13855000 4629100 9225600 0 0 0 5614 818 5746 14724 22947;22948 22948 2 GYAFVQYSNER IFSKYGRVAGCSVHKGYAFVQYSNERHARA SVHKGYAFVQYSNERHARAAVLGENGRVLA K G Y E R H 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 2 1 0 0 11 0 1332.6099 A8K4T9;Q53GL6;Q5QPL9;Q9UKM9;Q5QPM1;Q5QPM2;B4DSJ1 A8K4T9 56 66 RALY RNA-binding protein Raly yes no 2 0.00011853 96.331 1 0.57616 0.48719 NaN 1 Median NaN NaN NaN 0 0 Median 0.57616 0.48719 NaN 1 0 Median 9484800 5598200 3886700 0 0 0 9484800 5598200 3886700 5615 741 5747 14725 22949 22949 1 GYAFVTFCTK WDLRLMMDPLTGLNRGYAFVTFCTKEAAQE TGLNRGYAFVTFCTKEAAQEAVKLYNNHEI R G Y T K E 1 0 0 0 1 0 0 1 0 0 0 1 0 2 0 0 2 0 1 1 0 0 10 0 1192.5587 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645 Q05CK9 240 249 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 0.0035438 64.04 1 2.29 2.3418 NaN 1 Median 2.29 2.3418 NaN 1 0 Median NaN NaN NaN 0 0 Median 9349700 2695300 6654400 9349700 2695300 6654400 0 0 0 5616 864 5748 14726 22950 22950 1 GYATDESTVSSVQGSR MGFRPSSTRGPEKEKGYATDESTVSSVQGS YATDESTVSSVQGSRSYSGRGRGRRGPNYT K G Y S R S 1 1 0 1 0 1 1 2 0 0 0 0 0 0 0 4 2 0 1 2 0 0 16 0 1642.7435 A0A0F7KYT8;A0A0F7L0Q8;B4DM78;Q14341 A0A0F7KYT8 395 410 FXR1 yes no 2 4.5646E-10 112.43 2 1 0.63567 0.66459 15.249 3 Median 0.67849 0.69643 6.6188 2 0 Median 0.61899 0.54163 NaN 1 0 Median 23183000 13305000 9878800 21328000 12081000 9246100 1855900 1223200 632720 5617 531 5749 14727;14728;14729 22951;22952;22953 22952 3 GYAVLGGER LNDIAAVPATAMPFRGYAVLGGERGGPEVQ TAMPFRGYAVLGGERGGPEVQQVPAGERPL R G Y E R G 1 1 0 0 0 0 1 3 0 0 1 0 0 0 0 0 0 0 1 1 0 0 9 0 920.47158 A0A0U1RQF0;P49327 A0A0U1RQF0 469 477 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.005969 73.26 1 1 0.70103 0.60785 NaN 1 Median NaN NaN NaN 0 0 Median 0.70103 0.60785 NaN 1 0 Median 15805000 15104000 701320 13731000 13731000 0 2074400 1373100 701320 5618 587 5750 14730;14731 22954;22955 22954 2 GYAYTFITEDQAR DYVHRAGRTGRAGNKGYAYTFITEDQARYA NKGYAYTFITEDQARYAGDIIKALELSGTA K G Y A R Y 2 1 0 1 0 1 1 1 0 1 0 0 0 1 0 0 2 0 2 0 0 0 13 0 1533.71 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 717 729 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.00013248 85.958 2 1 0.84076 0.91803 44.486 3 Median 0.93992 1.0026 12.456 2 0 Median 0.5599 0.47109 NaN 1 0 Median 56166000 28367000 27800000 51671000 25273000 26398000 4495500 3093900 1401700 5619 511 5751 14732;14733;14734 22956;22957;22958;22959;22960 22956 5 GYAYVEFENPDEAEK MIDMPVERMHPHLSKGYAYVEFENPDEAEK GYAYVEFENPDEAEKALKHMDGGQIDGQEI K G Y E K A 2 0 1 1 0 0 4 1 0 0 0 1 0 1 1 0 0 0 2 1 0 0 15 0 1759.7577 H3BV80;H3BMS0;H3BMM9;H3BTC0;D3DU92;Q15287;H3BPG5 H3BV80 110 124 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 2 1.4771E-05 89.403 1 2 0.70933 0.57396 2.5832 2 Median NaN NaN NaN 0 0 Median 0.70933 0.57396 2.5832 2 0 Median 53173000 10808000 42366000 34268000 0 34268000 18905000 10808000 8097700 5620 1192 5752 14735;14736;14737 22961;22962;22963;22964 22962 4 GYDAPLCNLLLFK LFKIGYDYKLEQIKKGYDAPLCNLLLFKKV KKGYDAPLCNLLLFKKVKALLGGNVRMMLS K G Y F K K 1 0 1 1 1 0 0 1 0 0 4 1 0 1 1 0 0 0 1 0 0 0 13 0 1522.7854 Q8TAF6;O60488;B4DH39;H0Y9A0 Q8TAF6 373 385 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.00011838 94.692 2 1.4708 1.4772 3.8911 2 Median 1.4708 1.4772 3.8911 2 0 Median NaN NaN NaN 0 0 Median 12137000 5237700 6899300 12137000 5237700 6899300 0 0 0 5621 1394 5753 14738;14739 22965;22966;22967 22967 3 GYDFESETDTETIAK IITNYKDLKKFLESKGYDFESETDTETIAK GYDFESETDTETIAKLVKYMYDNRESQDTS K G Y A K L 1 0 0 2 0 0 3 1 0 1 0 1 0 1 0 1 3 0 1 0 0 0 15 0 1704.7366 Q06210 Q06210 140 154 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 1.0381E-06 93.258 2 2 1.4084 1.0985 63.048 3 Median 3.0385 3.2341 NaN 1 0 Median 1.3839 1.0854 1.6979 2 0 Median 45762000 7404000 38358000 38063000 3977700 34085000 7699300 3426300 4273000 5622 1688 5754 14740;14741;14742;14743 22968;22969;22970;22971;22972;22973;22974;22975;22976 22969 9 GYDSAGVGFDGGNDK ILETLIKGLQRLEYRGYDSAGVGFDGGNDK GYDSAGVGFDGGNDKDWEANACKIQLIKKK R G Y D K D 1 0 1 3 0 0 0 5 0 0 0 1 0 1 0 1 0 0 1 1 0 0 15 0 1457.6059 Q06210 Q06210 34 48 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.0002548 76.522 2 2 1.4253 1.1521 56.335 3 Median 3.017 3.0504 NaN 1 0 Median 1.4101 1.1497 0.28544 2 0 Median 41379000 6882600 34497000 37064000 5045200 32019000 4314900 1837400 2477500 5623 1688 5755 14744;14745;14746;14747 22977;22978;22979;22980;22981;22982 22978 6 GYDSDPVK ENKPKKELIKVLIQRGYDSDPVKAWKEAQQ IKVLIQRGYDSDPVKAWKEAQQKVPDEEEN R G Y V K A 0 0 0 2 0 0 0 1 0 0 0 1 0 0 1 1 0 0 1 1 0 0 8 0 879.39741 P11388 P11388 1081 1088 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.012693 67.032 1 0.73848 0.83361 NaN 1 Median 0.73848 0.83361 NaN 1 0 Median NaN NaN NaN 0 0 Median 79794000 42864000 36929000 79794000 42864000 36929000 0 0 0 5624 1471 5756 14748 22983 22983 1 GYDVIAQAQSGTGK KPSAIQQRAILPCIKGYDVIAQAQSGTGKT KGYDVIAQAQSGTGKTATFAISILQQIELD K G Y G K T 2 0 0 1 0 2 0 3 0 1 0 1 0 0 0 1 1 0 1 1 0 0 14 0 1393.6838 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;J3QR64;E7EQG2;Q14240;J3QLN6;J3QKZ9;B4E047;J3KS25;B4E102;J3KS93;J3KSN7;J3KT04;E7EMV8;Q86WD0 A8K7F6 69 82 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 6.4431E-10 152.7 2 2 1.9101 2.2648 32.017 4 Linear 1.8828 2.1869 4.4482 2 0 Median 1.5358 1.259 2.4468 2 0 Median 567880000 201510000 366370000 506280000 176320000 329970000 61592000 25191000 36402000 5625 770 5757 14749;14750;14751;14752 22984;22985;22986;22987;22988;22989;22990;22991;22992 22984 9 GYDYGPHFQGILEASLEGDSGR LFLAQAEVYKELRLRGYDYGPHFQGILEAS FQGILEASLEGDSGRLLWKDNWVSFMDTML R G Y G R L 1 1 0 2 0 1 2 5 1 1 2 0 0 1 1 2 0 0 2 0 0 0 22 0 2367.0768 A0A0U1RQF0;P49327 A0A0U1RQF0 998 1019 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.001247 17.262 2 0.86544 0.72357 10.278 2 Median NaN NaN NaN 0 0 Median 0.86544 0.72357 10.278 2 0 Median 8205300 4173200 4032100 0 0 0 8205300 4173200 4032100 5626 587 5758 14753;14754 22993;22994;22995;22996 22993 4 GYEENYFFIFR IAREYNWNVKNKASKGYEENYFFIFREGDG KASKGYEENYFFIFREGDGVYYNELETRVR K G Y F R E 0 1 1 0 0 0 2 1 0 1 0 0 0 3 0 0 0 0 2 0 0 0 11 0 1483.6772 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 306 316 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0015533 66.621 2 1.8791 1.648 4.6837 2 Median NaN NaN NaN 0 0 Median 1.8791 1.648 4.6837 2 0 Median 4638500 1870400 2768200 0 0 0 4638500 1870400 2768200 5627 46 5759 14755;14756 22997;22998 22997 2 GYEEVHVPALK KRCQLPDGSFRRQRKGYEEVHVPALKPKPF RQRKGYEEVHVPALKPKPFGSEEQLLPVEK K G Y L K P 1 0 0 0 0 0 2 1 1 0 1 1 0 0 1 0 0 0 1 2 0 0 11 0 1240.6452 O75643;A4FU77;Q9H8B9 O75643 441 451 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.3404E-06 105.52 3 1 0.85808 0.75344 NaN 1 Median NaN NaN NaN 0 0 Median 0.85808 0.75344 NaN 1 0 Median 26544000 16568000 9975200 25474000 16090000 9383400 1070000 478150 591800 5628 1411 5760 14757;14758;14759;14760 22999;23000;23001;23002;23003 23002 5 GYELLFQPEVVR ANDTVDFPKRTSPARGYELLFQPEVVRIYI PARGYELLFQPEVVRIYISLLKESKTPAIL R G Y V R I 0 1 0 0 0 1 2 1 0 0 2 0 0 1 1 0 0 0 1 2 0 0 12 0 1448.7664 Q7KZJ3;A0A024R4Z0;Q96FS1;Q68DU0;C9JZR2;O60716;A0A024R4Y7 Q7KZJ3 326 337 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 2 0.017695 52.725 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5629 165 5761 14761 23004 23004 1 GYEVHGIVR TGQDGSYLAEFLLEKGYEVHGIVRRSSSFN EFLLEKGYEVHGIVRRSSSFNTGRIEHLYK K G Y V R R 0 1 0 0 0 0 1 2 1 1 0 0 0 0 0 0 0 0 1 2 0 0 9 0 1028.5403 B2R9X3;O60547 B2R9X3 47 55 GMDS GDP-mannose 4,6 dehydratase yes no 2 0.040383 50.127 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7053100 0 7053100 7053100 0 7053100 0 0 0 5630 869 5762 14762 23005 23005 1 GYFDEEMNR PVHSHRVPVDVAYRRGYFDEEMNRVLADPS DVAYRRGYFDEEMNRVLADPSDDTKGFFDP R G Y N R V 0 1 1 1 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 9 0 1159.4604 A0A075B730;A0A087X1U6;P58107;Q15149;D3DWL0 Q15149 2970 2978 EPPK1;PLEC;PLEC1 Epiplakin;Plectin no no 2 0.0036175 61.962 1 2.7466 3.0039 NaN 1 Median 2.7466 3.0039 NaN 1 0 Median NaN NaN NaN 0 0 Median 34679000 8964800 25714000 34679000 8964800 25714000 0 0 0 5631 1754;397;1622 5763 14763 23006 23006 288 1 GYFEYIEENK DKKRGVKRPREDHGRGYFEYIEENKYSRAK EDHGRGYFEYIEENKYSRAKSPQPPVEEED R G Y N K Y 0 0 1 0 0 0 3 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 10 0 1290.5768 B4DLR3;Q00839;Q96BA7;B3KX72;Q5RI18 B4DLR3 215 224 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 1.6847E-08 122.52 2 2 1.151 1.1223 45.531 4 Median 1.429 1.6539 0.8156 2 0 Median 0.91456 0.75202 2.5945 2 0 Median 516530000 222820000 293710000 449820000 188760000 261060000 66717000 34059000 32658000 5632 999 5764 14764;14765;14766;14767 23007;23008;23009;23010;23011;23012;23013;23014 23008 8 GYFFNGDCCELPTVR KSILSSRKTARKSTRGYFFNGDCCELPTVR GYFFNGDCCELPTVRTLARNLHSQEKASCS R G Y V R T 0 1 1 1 2 0 1 2 0 0 1 0 0 2 1 0 1 0 1 1 0 0 15 0 1833.7814 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 475 489 C10orf12 yes no 2 0.019593 42.629 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1914400 0 1914400 0 0 0 1914400 0 1914400 5633 630 5765 14768;14769 23015;23016 23016 2 GYGFGLIK TYADLGKSARDVFTKGYGFGLIKLDLKTKS ARDVFTKGYGFGLIKLDLKTKSENGLEFTS K G Y I K L 0 0 0 0 0 0 0 3 0 1 1 1 0 1 0 0 0 0 1 0 0 0 8 0 853.46979 A0A1L1UHR1;P21796;B3KTS5;B4DEI3;C9JI87 A0A1L1UHR1 21 28 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 0.01767 60.294 2 1 1.6659 1.9388 2.4735 3 Plateau 1.6592 1.9382 0.6625 2 0 Median 2.3139 1.8584 NaN 1 0 Median 567500000 205870000 361630000 552300000 201770000 350530000 15192000 4097700 11094000 5634 639 5766 14770;14771;14772 23017;23018;23019;23020 23019 4 GYGFITFSDSECAK ESIQLMMDSETGRSKGYGFITFSDSECAKK KGYGFITFSDSECAKKALEQLNGFELAGRP K G Y A K K 1 0 0 1 1 0 1 2 0 1 0 1 0 2 0 2 1 0 1 0 0 0 14 0 1580.6817 A0A0U1RQH7;B7Z4L7;Q6N037;E1P5S2;G3XAC6;B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;Q7Z3L0;Q6MZY7;A0A0U1RQW2 A0A0U1RQH7 139 152 DKFZp686A11192;RNPC2;RBM39;DKFZp781C0423;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 2 0.00028036 61.958 1 2 0.56535 0.44933 48.483 3 Median 0.9952 1.0137 NaN 1 0 Median 0.55273 0.43824 3.5348 2 0 Median 22376000 12232000 10144000 13261000 6125700 7135300 9115100 6106400 3008800 5635 588 5767 14773;14774;14775 23021;23022;23023;23024;23025;23026;23027 23022 7 GYGFVHFETQEAAER NILSCKVVCDENGSKGYGFVHFETQEAAER GYGFVHFETQEAAERAIEKMNGMLLNDRKV K G Y E R A 2 1 0 0 0 1 3 2 1 0 0 0 0 2 0 0 1 0 1 1 0 0 15 0 1739.7903 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;H0YAR2;H0YBN4;E5RGH3 A0A087WTT1 114 128 PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 1 yes no 3 0.00017986 69.594 1 2 1.1317 0.95283 2.5082 2 Median NaN NaN NaN 0 0 Median 1.1317 0.95283 2.5082 2 0 Median 25889000 3146500 22743000 19248000 0 19248000 6641300 3146500 3494800 5636 273 5768 14776;14777;14778 23028;23029;23030 23028 3 GYGYGQGAGTLSTDK EIYCKSCYGKKYGPKGYGYGQGAGTLSTDK GYGYGQGAGTLSTDKGESLGIKHEEAPGHR K G Y D K G 1 0 0 1 0 1 0 5 0 0 1 1 0 0 0 1 2 0 2 0 0 0 15 0 1473.6736 Q6AI18;E9PP21;Q9BTA4;B4DY28;Q6ZMS3;P21291;B4E2T4;E9PS42;E9PND2;Q59EQ5 Q6AI18 32 46 DKFZp686M148;CSRP1 Cysteine and glycine-rich protein 1 yes no 2 0.00694 51.218 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5637 1050 5769 14779 23031 23031 1 GYLDDPTVPR GQYVGNPDGEGEATKGYLDDPTVPRGSTTA GEATKGYLDDPTVPRGSTTATFAAVVLYVE K G Y P R G 0 1 0 2 0 0 0 1 0 0 1 0 0 0 2 0 1 0 1 1 0 0 10 0 1131.556 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;Q0PHS1;E7EUI8;B4DYA7 Q2VF42 281 290 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.042499 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5638 775 5770 14780 23032 23032 1 GYLVTQDELDQTLEEFK LWKIRKTIMQLCHDRGYLVTQDELDQTLEE LVTQDELDQTLEEFKAQSGDKPSEGRPRRT R G Y F K A 0 0 0 2 0 2 3 1 0 0 3 1 0 1 0 0 2 0 1 1 0 0 17 0 2026.9735 A0A087WVZ9;E5KT65;P19388;A0A0A0MQR7 A0A087WVZ9 25 41 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 2 7.1875E-13 120.84 1 1 0.91263 0.82599 19.369 2 Median 0.94075 0.94722 NaN 1 0 Median 0.88535 0.72027 NaN 1 0 Median 34156000 20405000 13751000 27094000 16768000 10327000 7061600 3637400 3424200 5639 423 5771 14781;14782 23033;23034;23035;23036 23033 4 GYNATVLAYGQTGSGK VFNTAVAPLIKGVFKGYNATVLAYGQTGSG YNATVLAYGQTGSGKTYSMGGAYTAEQENE K G Y G K T 2 0 1 0 0 1 0 4 0 0 1 1 0 0 0 1 2 0 2 1 0 0 16 0 1585.7736 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 82 97 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 1.6908E-24 138.89 2 2 1.1534 1.1106 17.713 4 Median 0.84034 0.94462 3.9704 2 0 Median 1.5531 1.2802 1.1757 2 0 Median 252590000 129990000 122600000 181440000 101770000 79665000 71156000 28219000 42936000 5640 1803 5772 14783;14784;14785;14786 23037;23038;23039;23040;23041;23042;23043;23044 23039 8 GYNDDYYEESYFTTR YDLPKKEDALLYQSKGYNDDYYEESYFTTR GYNDDYYEESYFTTRTYGEPESAGPSRAVR K G Y T R T 0 1 1 2 0 0 2 1 0 0 0 0 0 1 0 1 2 0 4 0 0 0 15 0 1921.7643 P50402;Q5HY57 P50402 89 103 EMD Emerin yes no 2 1.8363E-10 120.53 2 2 0.6646 0.61838 15.335 4 Median 0.66026 0.70507 10.371 2 0 Median 0.68361 0.55711 6.5728 2 0 Median 102070000 63101000 38967000 79408000 48634000 30774000 22661000 14468000 8193100 5641 1590 5773 14787;14788;14789;14790 23045;23046;23047;23048;23049;23050;23051;23052 23046 8 GYPDSESTWEPR YKKIREQEYYLVKWRGYPDSESTWEPRQNL KWRGYPDSESTWEPRQNLKCVRILKQFHKD R G Y P R Q 0 1 0 1 0 0 2 1 0 0 0 0 0 0 2 2 1 1 1 0 0 0 12 0 1422.6052 O43463 O43463 66 77 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2 0.00019323 78.655 1 2 1.959 1.682 30.567 3 Median 0.99282 0.99526 NaN 1 0 Median 2.0022 1.6898 0.65623 2 0 Median 31569000 14613000 16955000 18034000 10167000 7867000 13534000 4445900 9088500 5642 1385 5774 14791;14792;14793 23053;23054;23055;23056;23057 23053 5 GYPEVALHFVK AKLVGQSIIAYLQKKGYPEVALHFVKDEKT LQKKGYPEVALHFVKDEKTRFSLALECGNI K G Y V K D 1 0 0 0 0 0 1 1 1 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1258.671 P53621 P53621 633 643 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0011366 69.812 1 1.2116 1.2712 NaN 1 Median 1.2116 1.2712 NaN 1 0 Median NaN NaN NaN 0 0 Median 16564000 7152400 9411200 16564000 7152400 9411200 0 0 0 5643 1607 5775 14794 23058;23059 23058 2 GYPSYPALIIDPK DSPLDALDLVWAKCRGYPSYPALIIDPKMP CRGYPSYPALIIDPKMPREGMFHHGVPIPV R G Y P K M 1 0 0 1 0 0 0 1 0 2 1 1 0 0 3 1 0 0 2 0 0 0 13 0 1432.7602 P55201;A0A024RCX0;Q9ULD4 P55201 1095 1107 BRPF1;BRPF3 Peregrin;Bromodomain and PHD finger-containing protein 3 yes no 2 0.051491 39.917 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8756600 5697000 3059600 5697000 5697000 0 3059600 0 3059600 5644 1616 5776 14795;14796 23060;23061 23061 2 GYSFTTTAER GRDLTDYLMKILTERGYSFTTTAEREIVRD ILTERGYSFTTTAEREIVRDIKEKLCYVAL R G Y E R E 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 3 0 1 0 0 0 10 0 1131.5197 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;V9HVZ7 P63261 197 206 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 2.8615E-22 166.52 5 2 1.8356 2.1761 10.277 5 Plateau 1.8235 2.1822 14.314 3 0 Plateau 2.3509 2.0534 2.3315 2 0 Median 8517500000 2941600000 5575800000 7572200000 2662700000 4909600000 945240000 278990000 666260000 5645 1624;1656;2186 5777 14797;14798;14799;14800;14801;14802;14803 23062;23063;23064;23065;23066;23067;23068;23069;23070;23071;23072;23073;23074;23075;23076;23077;23078;23079;23080;23081;23082 23071 21 GYSVEEVYDLAK TEEMCVMLVSNLPNKGYSVEEVYDLAKPFG PNKGYSVEEVYDLAKPFGGLKDILILSSHK K G Y A K P 1 0 0 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 2 2 0 0 12 0 1371.6558 Q14966;D6W5H1;A8K583;B4E187 Q14966 916 927 ZNF638 Zinc finger protein 638 yes no 2 0.021127 50.791 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5646 1746 5778 14804 23083 23083 1 GYTLVEYETYK KNIHLNLDRRTGYLKGYTLVEYETYKEAQA GYLKGYTLVEYETYKEAQAAMEGLNGQDLM K G Y Y K E 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 2 0 3 1 0 0 11 0 1364.65 A0A023T787;Q9Y5S9;A0A0J9YW13 A0A023T787 115 125 RBM8;RBM8A RNA-binding protein 8A yes no 2 1.9389E-13 149.72 2 2 1.7379 1.9072 39.53 3 Median 1.8036 1.9625 4.0423 2 0 Median 1.2634 0.99137 NaN 1 0 Median 81577000 28508000 53069000 75765000 26647000 49118000 5812000 1861100 3950900 5647 4 5779 14805;14806;14807;14808 23084;23085;23086;23087;23088;23089;23090;23091 23086 8 GYVGSIQPHGVFFR EINSIQDIKEGQLLRGYVGSIQPHGVFFRL RGYVGSIQPHGVFFRLGPSVVGLARYSHVS R G Y F R L 0 1 0 0 0 1 0 3 1 1 0 0 0 2 1 1 0 0 1 2 0 0 14 0 1562.7994 Q14690 Q14690 1329 1342 PDCD11 Protein RRP5 homolog yes yes 2;3 5.3492E-05 71.548 2 3 1.3376 1.1332 32.301 5 Median 0.76598 0.84532 51.441 2 0 Median 1.3987 1.1332 9.3977 3 0 Median 123250000 64410000 58844000 98479000 53912000 44567000 24776000 10498000 14277000 5648 1741 5780 14809;14810;14811;14812;14813 23092;23093;23094;23095;23096;23097;23098;23099 23094 8 GYYSPGIVSTR VKPAQASHTNYLLMRGYYSPGIVSTRNLNP LLMRGYYSPGIVSTRNLNPNDSIVVNSCQM R G Y T R N 0 1 0 0 0 0 0 2 0 1 0 0 0 0 1 2 1 0 2 1 0 0 11 0 1198.5982 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1650 1660 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.00022163 91.867 2 1 1.1762 1.1606 32.512 3 Median 1.0492 1.0664 11.97 2 0 Median 2.0278 1.8368 NaN 1 0 Median 25919000 12244000 13675000 23732000 11591000 12141000 2186500 653110 1533400 5649 1699 5781 14814;14815;14816 23100;23101;23102;23103 23101 4 GYYSPYSVSGSGSTAGSR GTGLRLLEAAAQSTKGYYSPYSVSGSGSTA SPYSVSGSGSTAGSRTGSRTGSRAGSRRGS K G Y S R T 1 1 0 0 0 0 0 4 0 0 0 0 0 0 1 6 1 0 3 1 0 0 18 0 1781.7857 Q15149;D3DWL0;Q96IE3 Q15149 4610 4627 PLEC;PLEC1 Plectin yes no 2 6.7917E-08 93.011 2 1.8014 1.9783 2.1205 2 Median 1.8014 1.9783 2.1205 2 0 Median NaN NaN NaN 0 0 Median 90244000 33206000 57038000 90244000 33206000 57038000 0 0 0 5650 1754 5782 14817;14818 23104;23105;23106;23107;23108 23106 5 HAALQDIGK APVEHVVADAGAFLRHAALQDIGKNIYTIR AGAFLRHAALQDIGKNIYTIREVVTEIRDK R H A G K N 2 0 0 1 0 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 951.51378 B2RAR2;Q9ULX3;H3BUR4 B2RAR2 17 25 NOB1 RNA-binding protein NOB1 yes no 2 1.1919E-05 125.16 2 1.2214 1.3323 10.864 2 Median 1.2214 1.3323 10.864 2 0 Median NaN NaN NaN 0 0 Median 79888000 34333000 45555000 79888000 34333000 45555000 0 0 0 5651 874 5783 14819;14820 23109;23110 23110 2 HAASTVQILGAEK ARLIAHAGSLLNLAKHAASTVQILGAEKAL AKHAASTVQILGAEKALFRALKSRRDTPKY K H A E K A 3 0 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 0 0 1 0 0 13 0 1323.7147 Q9Y2X3;B3KN82 Q9Y2X3 311 323 NOP58 Nucleolar protein 58 yes no 2;3 6.3413E-75 233.32 6 3 0.82935 0.90564 5.5496 8 Median 0.81398 0.94369 4.2513 5 0 Median 1.0128 0.84711 4.5508 3 0 Median 1526200000 857160000 669080000 1424300000 808060000 616260000 101920000 49104000 52816000 5652 2129 5784 14821;14822;14823;14824;14825;14826;14827;14828;14829 23111;23112;23113;23114;23115;23116;23117;23118;23119;23120;23121;23122;23123;23124;23125;23126;23127 23111 16 HAATAPPHSCPPDDTK LETVKRKSESSPIVRHAATAPPHSCPPDDT AATAPPHSCPPDDTKLIEDEFIIDESDQSF R H A T K L 3 0 0 2 1 0 0 0 2 0 0 1 0 0 4 1 2 0 0 0 0 0 16 0 1700.7577 Q03188;H0Y8J2 Q03188 282 297 CENPC Centromere protein C yes no 3 0.00071607 48.823 1 2 0.9532 0.90907 26.578 2 Median 0.67691 0.75332 NaN 1 0 Median 1.3423 1.097 NaN 1 0 Median 11111000 3929800 7180900 2556500 1709100 847420 8554200 2220700 6333500 5653 1681 5785 14830;14831;14832 23128;23129;23130;23131 23131 4 HADNCAGPDGVEGENGGETK SKCGKTFTRRNTMARHADNCAGPDGVEGEN AGPDGVEGENGGETKKSKRGRKRKMRSKKE R H A T K K 2 0 2 2 1 0 3 5 1 0 0 1 0 0 1 0 1 0 0 1 0 0 20 0 2012.813 P49711;B3KSE4 P49711 573 592 CTCF Transcriptional repressor CTCF yes no 3 0.011446 35.015 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2809600 2809600 0 2809600 2809600 0 0 0 0 5654 1585 5786 14833;14834 23132;23133 23132 2 HAIPIIK NIELTRYTRPTPVQKHAIPIIKEKRDLMAC TRPTPVQKHAIPIIKEKRDLMACAQTGSGK K H A I K E 1 0 0 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 0 0 0 0 7 0 790.50651 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;A0A024R9A4;O15523;B4DLU5;B4E010;C9J8G5;C9J081;B4E3C4 A0A0D9SFB3 209 215 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.019549 94.95 2 2 1.6845 1.9019 33.883 3 Plateau 1.6845 1.903 NaN 1 0 Median 1.3468 1.0582 0.04946 2 0 Median 205920000 52387000 153530000 199030000 49143000 149890000 6884100 3243000 3641100 5655 522 5787 14835;14836;14837;14838 23134;23135;23136;23137;23138 23135 5 HAIPNLVK RNLAVDARNKELIGKHAIPNLVKNLPGGQQ NKELIGKHAIPNLVKNLPGGQQNSSWNFSE K H A V K N 1 0 1 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 1 0 0 8 0 890.53379 Q7KZJ3;A0A024R4Z0;Q96FS1;Q68DU0;C9JZR2;O60716;A0A024R4Y7 Q7KZJ3 421 428 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 2 0.010089 73.039 1 1.1282 1.1323 NaN 1 Median 1.1282 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median 9888300 4275100 5613200 9888300 4275100 5613200 0 0 0 5656 165 5788 14839 23139 23139 1 HALFPELPK SPEARKRALFPEPRKHALFPELPKSALFSE FPEPRKHALFPELPKSALFSESQKAVELGD K H A P K S 1 0 0 0 0 0 1 0 1 0 2 1 0 1 2 0 0 0 0 0 0 0 9 0 1050.5862 Q96JM3 Q96JM3 557 565 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 2 0.019876 58.981 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 733020 0 733020 0 0 0 733020 0 733020 5657 1974 5789 14840;14841 23140;23141 23141 2 HALIIYDDLSK YSGCSMGEYFRDNGKHALIIYDDLSKQAVA DNGKHALIIYDDLSKQAVAYRQMSLLLRRP K H A S K Q 1 0 0 2 0 0 0 0 1 2 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1286.6871 V9HW26;P25705 V9HW26 306 316 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.0093307 49.444 1 0.84712 0.72773 NaN 1 Median NaN NaN NaN 0 0 Median 0.84712 0.72773 NaN 1 0 Median 1399400 610170 789220 0 0 0 1399400 610170 789220 5658 1518 5790 14842 23142 23142 1 HAPINSAQHLDNVDQTGPK SDSAEDEKRKRKCQKHAPINSAQHLDNVDQ NSAQHLDNVDQTGPKAWKGSTTNDPPKQSP K H A P K A 2 0 2 2 0 2 0 1 2 1 1 1 0 0 2 1 1 0 0 1 0 0 19 0 2040.9977 O43159;E9PPY3 O43159 139 157 RRP8 Ribosomal RNA-processing protein 8 yes no 3 9.3041E-06 56.121 1 2 0.87932 0.69259 32.328 3 Median 1.0572 1.0967 NaN 1 0 Median 0.81476 0.63808 11.594 2 0 Median 19163000 9208300 9954800 12563000 6276100 6286800 6600200 2932200 3668000 5659 1380 5791 14843;14844;14845 23143;23144;23145;23146;23147;23148 23143 6 HAPLADQILAGNAVR MPKFKAARGVGGQEKHAPLADQILAGNAVR HAPLADQILAGNAVRAGVREKRRGRGTGEA K H A V R A 4 1 1 1 0 1 0 1 1 1 2 0 0 0 1 0 0 0 0 1 0 0 15 0 1544.8423 Q13895;F8WBL2 Q13895 16 30 BYSL Bystin yes no 2;3 0.0041604 58.37 1 2 0.88504 0.76568 8.9134 2 Median NaN NaN NaN 0 0 Median 0.88504 0.76568 8.9134 2 0 Median 11089000 4475100 6614400 2343000 0 2343000 8746400 4475100 4271300 5660 1724 5792 14846;14847;14848 23149;23150;23151 23149 3 HASPILPITEFSDIPR SNESLVVNRVTGNFKHASPILPITEFSDIP ASPILPITEFSDIPRRAPKKPLTRAEVGEK K H A P R R 1 1 0 1 0 0 1 0 1 3 1 0 0 1 3 2 1 0 0 0 0 0 16 0 1791.9519 A0A024RBE7;P42167;G5E972;H0YJH7 A0A024RBE7 304 319 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2;3 9.1116E-13 96.604 3 3 1.2653 1.0729 7.428 5 Median 1.0552 1.1338 10.551 2 0 Median 1.3146 1.0729 6.8787 3 0 Median 123740000 51291000 72446000 94012000 37648000 56365000 29726000 13644000 16082000 5661 334 5793 14849;14850;14851;14852;14853;14854 23152;23153;23154;23155;23156;23157;23158;23159;23160;23161;23162 23156 11 HATAEEVEEEER KPKRNEIDAEPPAKRHATAEEVEEEERDRI AKRHATAEEVEEEERDRIPGPVCKGKWKNK R H A E R D 2 1 0 0 0 0 6 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 12 0 1427.6165 Q8TDN6;B4E0B8;Q9NUW4 Q8TDN6 33 44 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 1.0743E-19 150.46 2 0.73437 0.7671 4.8161 2 Median 0.73437 0.7671 4.8161 2 0 Median NaN NaN NaN 0 0 Median 33237000 19427000 13810000 33237000 19427000 13810000 0 0 0 5662 1934 5794 14855;14856 23163;23164;23165;23166 23163 4 HAVSDPSILDSLDLNEDEREVLINNINR DKYKRPGYGAYDAFKHAVSDPSILDSLDLN LNEDEREVLINNINRRLTPQAVKIRADIEV K H A N R R 1 2 4 4 0 0 3 0 1 3 4 0 0 0 1 3 0 0 0 2 0 0 28 1 3189.5902 Q53XC0;P05198;H0YJS4;G3V4T5 Q53XC0 155 182 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 4 0.016126 18.356 1 0.77846 0.66718 NaN 1 Median NaN NaN NaN 0 0 Median 0.77846 0.66718 NaN 1 0 Median 5708500 2918600 2789900 0 0 0 5708500 2918600 2789900 5663 1445 5795 14857 23167 23167 1 HAVSEGTKAVTKYTSSK IQTAVRLLLPGELAKHAVSEGTKAVTKYTS VSEGTKAVTKYTSSK_______________ K H A S K - 2 0 0 0 0 0 1 1 1 0 0 3 0 0 0 3 3 0 1 2 0 0 17 2 1792.9319 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;L0R4T3;Q16778;P33778;P23527;Q8N257 B2R4S9 110 126 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;ABCF2;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B no no 3 0.02831 16.357 2 0.87015 1.0321 4.7451 2 Median 0.87015 1.0321 4.7451 2 0 Median NaN NaN NaN 0 0 Median 71428000 37993000 33435000 71428000 37993000 33435000 0 0 0 5664 34;1513 5796 14858;14859 23168;23169 23168 2 HAVTEAEIQQLK EPEKLVHKFKELQIKHAVTEAEIQQLKRKL QIKHAVTEAEIQQLKRKLQSLEQEKGRWRV K H A L K R 2 0 0 0 0 2 2 0 1 1 1 1 0 0 0 0 1 0 0 1 0 0 12 0 1365.7252 D3DTX6;Q96SB3;B3KNT0;Q96B17 D3DTX6 678 689 PPP1R9B Neurabin-2 yes no 2 0.030341 45.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5665 1190 5797 14860 23170 23170 1 HCAPSGTPTGPEILAAAVPPSSLK RKSASSFFKELREERHCAPSGTPTGPEILA GPEILAAAVPPSSLKNNREQVEVVEFHSNK R H C L K N 4 0 0 0 1 0 1 2 1 1 2 1 0 0 5 3 2 0 0 1 0 0 24 0 2357.2049 Q8NDD1;Q5TBH9;Q5TBI2;B4E0F7 Q8NDD1 99 122 C1orf131 Uncharacterized protein C1orf131 yes no 3 2.3374E-09 55.734 2 1.2665 1.026 2.5362 2 Median NaN NaN NaN 0 0 Median 1.2665 1.026 2.5362 2 0 Median 15981000 8105800 7875400 0 0 0 15981000 8105800 7875400 5666 1925 5798 14861;14862 23171;23172;23173 23173 2 HCCSTADFGDLPLLPPTSR CPEVAKADRWLEDSRHCCSTADFGDLPLLP TADFGDLPLLPPTSRKEDLEAEEEYSSLCE R H C S R K 1 1 0 2 2 0 0 1 1 0 3 0 0 1 3 2 2 0 0 0 0 0 19 0 2142.9827 Q7Z5J4;A8MXE8 Q7Z5J4 843 861 RAI1 Retinoic acid-induced protein 1 yes no 3 0.052674 11.46 1 1.8269 1.5696 NaN 1 Median NaN NaN NaN 0 0 Median 1.8269 1.5696 NaN 1 0 Median 1717300 695990 1021300 0 0 0 1717300 695990 1021300 5667 1879 5799 14863 23174 23174 1 HCLGVFFPVFAYASR LLWYNPVTEEDVQLRHCLGVFFPVFAYASR HCLGVFFPVFAYASRTNQECFEEAFLPTLQ R H C S R T 2 1 0 0 1 0 0 1 1 0 1 0 0 3 1 1 0 0 1 2 0 0 15 0 1769.8712 Q9BPX3;Q6NUR1 Q9BPX3 750 764 NCAPG Condensin complex subunit 3 yes no 2;3 3.8133E-05 69.92 3 4 1.5234 1.251 26.663 6 Median 0.7878 0.78679 0.33837 2 0 Median 1.5673 1.318 5.8157 4 0 Median 61491000 25720000 35771000 29721000 12938000 16783000 31770000 12782000 18988000 5668 1995 5800 14864;14865;14866;14867;14868;14869;14870 23175;23176;23177;23178;23179;23180;23181;23182;23183;23184;23185;23186;23187;23188;23189;23190 23179 16 HCLNACIQR HTACTNIAKLIHVIRHCLNACIQRAVREPP LIHVIRHCLNACIQRAVREPPEDEEEEDGR R H C Q R A 1 1 1 0 2 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1170.5386 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5 Q86XI2 576 584 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.030378 53.351 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2566000 2566000 0 2566000 2566000 0 0 0 0 5669 1887 5801 14871 23191 23191 1 HCNMVLENVK RNNKKLLGRVKAFDRHCNMVLENVKEMWTE KAFDRHCNMVLENVKEMWTEVPKSGKGKKK R H C V K E 0 0 2 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 2 0 0 10 0 1242.5849 P62316 P62316 62 71 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 2 0.0011644 75.387 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19497000 9788400 9708500 19497000 9788400 9708500 0 0 0 5670 1645 5802 14872;14873 23192;23193 23192 1425 2 HDELADSLPCAEGEFIFLR EVKDCEGLPREKKGKHDELADSLPCAEGEF ADSLPCAEGEFIFLRLNVLREYLERELTMA K H D L R L 2 1 0 2 1 0 3 1 1 1 3 0 0 2 1 1 0 0 0 0 0 0 19 0 2218.0365 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 211 229 XRN2 5-3 exoribonuclease 2 yes no 3 0.0032494 25.586 1 0.95995 0.8463 NaN 1 Median NaN NaN NaN 0 0 Median 0.95995 0.8463 NaN 1 0 Median 1406800 694060 712770 0 0 0 1406800 694060 712770 5671 903 5803 14874 23194 23194 1 HDIPDLGTMSEAK FGPTAYFTLCNVVMRHDIPDLGTMSEAKPH MRHDIPDLGTMSEAKPHLITHGFSSRLGKR R H D A K P 1 0 0 2 0 0 1 1 1 1 1 1 1 0 1 1 1 0 0 0 0 0 13 0 1412.6606 H0Y714;Q96G21;B8ZZ47;E7ENR5;B9A008 H0Y714 160 172 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.00010373 69.815 1 1.2638 1.4166 NaN 1 Median 1.2638 1.4166 NaN 1 0 Median NaN NaN NaN 0 0 Median 79841000 34937000 44904000 79841000 34937000 44904000 0 0 0 5672 1286 5804 14875 23195 23195 983 1 HDLDLICR SFTFGAEVVAKFLHKHDLDLICRAHQVVED VAKFLHKHDLDLICRAHQVVEDGYEFFAKR K H D C R A 0 1 0 2 1 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1040.5073 P62136;A0A140VJS9;B3KXM2;E9PMD7;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;B4DNE3;V9HW04;P62140;B4DJ75;B7ZB67 P62136 239 246 PPP1CA;PPP1CC;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 8.063E-21 178.08 2 2 1.5325 1.5071 22.767 4 Median 1.0649 1.2208 5.0132 2 0 Median 2.1369 1.805 0.72602 2 0 Median 348180000 159660000 188520000 303170000 145550000 157620000 45011000 14116000 30895000 5673 1632;343;1633 5805 14876;14877;14878;14879 23196;23197;23198;23199;23200;23201;23202;23203 23198 8 HDLLTEPDLGVTIDLINPDTYR RFVQYKATSLEKQHKHDLLTEPDLGVTIDL DLGVTIDLINPDTYRIDPNVLLDPADEKLL K H D Y R I 0 1 1 4 0 0 1 1 1 2 4 0 0 0 2 0 3 0 1 1 0 0 22 0 2509.27 A0A024R0H6;Q8N7H5 A0A024R0H6 72 93 PAF1 RNA polymerase II-associated factor 1 homolog yes no 3 5.3842E-08 60.602 1 1.1153 1.1251 NaN 1 Median 1.1153 1.1251 NaN 1 0 Median NaN NaN NaN 0 0 Median 6087100 2624600 3462500 6087100 2624600 3462500 0 0 0 5674 46 5806 14880 23204;23205 23205 2 HDLPLHPAVVK KTYFEDNPRDLQLLRHDLPLHPAVVKPHLG QLLRHDLPLHPAVVKPHLGHVPDYLVPPAL R H D V K P 1 0 0 1 0 0 0 0 2 0 2 1 0 0 2 0 0 0 0 2 0 0 11 0 1224.6979 Q9NY93;Q53HB9;H7BZN7 Q9NY93 476 486 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 0.00047911 66.595 2 1 1.2099 1.1288 16.93 3 Plateau 1.0739 1.1288 20.71 2 0 Median 1.2402 0.97436 NaN 1 0 Median 71963000 37197000 34766000 68005000 35476000 32529000 3958200 1721100 2237200 5675 2081 5807 14881;14882;14883 23206;23207;23208 23206 2 HDNLLHGTK NFSQEDQQDTQIYEKHDNLLHGTKKKKEEM TQIYEKHDNLLHGTKKKKEEMVSAAFMKKY K H D T K K 0 0 1 1 0 0 0 1 2 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1033.5305 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46;Q7Z6P5 Q53HJ4 548 556 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 3 0.041777 20.336 1 1.1734 1.1869 NaN 1 Median 1.1734 1.1869 NaN 1 0 Median NaN NaN NaN 0 0 Median 4754700 2414600 2340200 4754700 2414600 2340200 0 0 0 5676 568 5808 14884 23209 23209 1 HDNTVITAVNNMTLK DKITKMKVTMVAWDRHDNTVITAVNNMTLK HDNTVITAVNNMTLKVWNSYTGQLIHVLMG R H D L K V 1 0 3 1 0 0 0 0 1 1 1 1 1 0 0 0 3 0 0 2 0 0 15 0 1669.8458 Q8WWQ0 Q8WWQ0 435 449 PHIP PH-interacting protein yes yes 2 1.196E-07 107.65 3 1.4054 1.4231 NaN 1 Median 1.4054 1.4231 NaN 1 0 Median NaN NaN NaN 0 0 Median 13008000 4383100 8624700 13008000 4383100 8624700 0 0 0 5677 1942 5809 14885;14886;14887 23210;23211;23212 23212 1779 3 HDVGLPGVSR KVNRQKFQILGRKTRHDVGLPGVSRARALR GRKTRHDVGLPGVSRARALRKRTQTLLKEY R H D S R A 0 1 0 1 0 0 0 2 1 0 1 0 0 0 1 1 0 0 0 2 0 0 10 0 1035.5461 A8KA74;P78316;E9PFK5 A8KA74 50 59 NOP14 Nucleolar protein 14 yes no 2 0.00088498 91.867 1 1.0295 1.0905 NaN 1 Median 1.0295 1.0905 NaN 1 0 Median NaN NaN NaN 0 0 Median 41421000 20344000 21077000 41421000 20344000 21077000 0 0 0 5678 790 5810 14888 23213;23214 23213 2 HDYALLIK H D I K 1 0 0 1 0 0 0 0 1 1 2 1 0 0 0 0 0 0 1 0 0 0 8 0 971.54402 REV__B9A063 yes no 3 0.0014569 81.784 2 1 0.63246 0.73808 4.3209 3 Plateau 0.61981 0.73808 4.1191 2 0 Median 0.81876 0.69838 NaN 1 0 Median 2142400000 1285300000 857100000 2077500000 1252800000 824700000 64852000 32450000 32401000 + 5679 2168 5811 14889;14890;14891 23215;23216;23217;23218;23219;23220;23221;23222;23223 23221 9 HEAMITDLEER EEEEKSKSLAKLKNKHEAMITDLEERLRRE LKNKHEAMITDLEERLRREEKQRQELEKTR K H E E R L 1 1 0 1 0 0 3 0 1 1 1 0 1 0 0 0 1 0 0 0 0 0 11 0 1342.6187 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;Q99529 A0A024R1N1 1025 1035 MYH9 Myosin-9 yes no 2 1.1826E-12 139.86 4 2 2.1659 2.072 21.319 6 Median 2.2463 2.4371 15.484 4 0 Median 1.9797 1.6716 11.347 2 0 Median 177780000 58296000 119480000 171280000 56098000 115180000 6503300 2197200 4306100 5680 81 5812 14892;14893;14894;14895;14896;14897 23224;23225;23226;23227;23228;23229;23230;23231;23232;23233;23234 23224 57 11 HEASDFPCR IDKSGSWAAIYQDIRHEASDFPCRVAKLPK IYQDIRHEASDFPCRVAKLPKNKNRNRYRD R H E C R V 1 1 0 1 1 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 9 0 1117.4611 A8K3M3;P18031 A8K3M3 25 33 PTPN1 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 1 yes no 2 0.00034217 101.43 2 1.2055 1.2168 2.8282 2 Median 1.2055 1.2168 2.8282 2 0 Median NaN NaN NaN 0 0 Median 13981000 7348800 6632300 13981000 7348800 6632300 0 0 0 5681 724 5813 14898;14899 23235;23236 23236 2 HECGAAFTSK SASVDAEKSMLSKLKHECGAAFTSKLEGMF LSKLKHECGAAFTSKLEGMFKDMELSKDIM K H E S K L 2 0 0 0 1 0 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 10 0 1106.4815 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 481 490 CUL4A Cullin-4A no no 2 0.0026988 67.897 1 1.032 1.0554 NaN 1 Median 1.032 1.0554 NaN 1 0 Median NaN NaN NaN 0 0 Median 17745000 8492100 9253200 17745000 8492100 9253200 0 0 0 5682 1718 5814 14900 23237 23237 1 HECQANGPEDLNR ASSKDAIKKKFQGIKHECQANGPEDLNRAC IKHECQANGPEDLNRACIAEKLGGSLIVAF K H E N R A 1 1 2 1 1 1 2 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 13 0 1538.6532 B7Z9M9;V9HWA6;P60981 B7Z9M9 116 128 HEL32;DSTN Destrin yes no 2;3 1.5941E-14 128.85 4 1 2.8832 2.5925 NaN 1 Median NaN NaN NaN 0 0 Median 2.8832 2.5925 NaN 1 0 Median 17051000 540190 16511000 14797000 0 14797000 2254700 540190 1714500 5683 1108 5815 14901;14902;14903;14904;14905 23238;23239;23240;23241;23242 23239 5 HECQNLESEPIR LLQENEQLMKVMKTKHECQNLESEPIRNSV KTKHECQNLESEPIRNSVKERESERNQCNF K H E I R N 0 1 1 0 1 1 3 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 12 0 1510.6834 P49454 P49454 1164 1175 CENPF Centromere protein F yes yes 2 1.6863E-05 101.93 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3539800 0 3539800 3539800 0 3539800 0 0 0 5684 1581 5816 14906 23243 23243 1 HEEEFDLFMR DEVPDDETVNQMIARHEEEFDLFMRMDLDR QMIARHEEEFDLFMRMDLDRRREEARNPKR R H E M R M 0 1 0 1 0 0 3 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 10 0 1351.5867 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;B4E0F1;B4DSI8;B3KNW7 A7E2E1 1309 1318 SMARCA4 Transcription activator BRG1 yes no 2 2.9338E-08 113.71 2 1.0313 1.0506 1.863 2 Median 1.0313 1.0506 1.863 2 0 Median NaN NaN NaN 0 0 Median 32143000 15638000 16505000 32143000 15638000 16505000 0 0 0 5685 695 5817 14907;14908 23244;23245;23246 23246 535 3 HEGVFICR RGNQSGKNVMVEPHRHEGVFICRGKEDALV VMVEPHRHEGVFICRGKEDALVTKNLVPGE R H E C R G 0 1 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1016.4862 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 32 39 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 1.5871E-09 161.6 2 2 0.78199 0.72664 8.278 4 Median 0.64583 0.71023 14.125 2 0 Median 0.88801 0.72664 0.92228 2 0 Median 180400000 99928000 80472000 149740000 84072000 65673000 30655000 15855000 14799000 5686 1506 5818 14909;14910;14911;14912 23247;23248;23249;23250;23251;23252;23253;23254 23250 8 HEIGEFPVFFFGSK VCHPKNVPPNIQKMKHEIGEFPVFFFGSKD KHEIGEFPVFFFGSKDYYWTHQARVFPYME K H E S K D 0 0 0 0 0 0 2 2 1 1 0 1 0 4 1 1 0 0 0 1 0 0 14 0 1639.8035 O96028;H0Y9U6 O96028 913 926 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2;3 1.1855E-05 98.902 3 2 1.511 1.197 20.238 3 Median 0.89114 0.89935 NaN 1 0 Median 1.5671 1.2616 7.4413 2 0 Median 26060000 11802000 14258000 15670000 7694400 7975300 10390000 4107800 6282400 5687 1435 5819 14913;14914;14915;14916;14917 23255;23256;23257;23258;23259;23260;23261 23256 7 HEILLSQSVR LVTSGAVAFGKQRLRHEILLSQSVRQALHS KQRLRHEILLSQSVRQALHSGQNQLKEMAI R H E V R Q 0 1 0 0 0 1 1 0 1 1 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1180.6564 P54886 P54886 129 138 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0010607 76.827 1 2.168 2.3331 NaN 1 Median 2.168 2.3331 NaN 1 0 Median NaN NaN NaN 0 0 Median 25752000 7559600 18192000 25752000 7559600 18192000 0 0 0 5688 1611 5820 14918 23262 23262 1 HELLLGAGSGPGAGQQQATPGALLQAGPPR RKGPELPLVPVKRQRHELLLGAGSGPGAGQ QQATPGALLQAGPPRCSSLQAPIMLLSGHE R H E P R C 5 1 0 0 0 4 1 7 1 0 5 0 0 0 4 1 1 0 0 0 0 0 30 0 2848.4944 B2R9I9;A0MNP2;Q96DI7 B2R9I9 22 51 WDR57;SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 3 6.8777E-20 81.055 2 2 0.9657 0.96499 19.592 4 Median 0.9657 1.0543 2.2038 2 0 Median 0.95056 0.7907 17.851 2 0 Median 109830000 50931000 58898000 89120000 40942000 48178000 20709000 9989700 10720000 5689 643 5821 14919;14920;14921;14922 23263;23264;23265;23266;23267;23268;23269;23270;23271;23272 23267 10 HELLQPFNVLYEK EDEKKARMGVVECAKHELLQPFNVLYEKEG AKHELLQPFNVLYEKEGEFVAQFKFTVLLM K H E E K E 0 0 1 0 0 1 2 0 1 0 3 1 0 1 1 0 0 0 1 1 0 0 13 0 1628.8562 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08 A8K6Y1 299 311 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.00050027 83.397 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7442700 0 7442700 7442700 0 7442700 0 0 0 5690 328 5822 14923 23273 23273 1 HELQANCYEEVK ASSKDAIKKKLTGIKHELQANCYEEVKDRC GIKHELQANCYEEVKDRCTLAEKLGGSAVI K H E V K D 1 0 1 0 1 1 3 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1518.6773 G3V1A4;V9HWI5;E9PK25;P23528;E9PP50 G3V1A4 116 127 CFL1;HEL-S-15 Cofilin-1 yes no 2 2.7378E-13 147.71 2 5.1575 5.176 NaN 1 Median 5.1575 5.176 NaN 1 0 Median NaN NaN NaN 0 0 Median 42703000 5365200 37338000 42703000 5365200 37338000 0 0 0 5691 1242 5823 14924;14925 23274;23275;23276 23276 3 HELSTEYIPDPER CIVKFYNNVQGLVPKHELSTEYIPDPERVF PKHELSTEYIPDPERVFYTGQVVKVVVLNC K H E E R V 0 1 0 1 0 0 3 0 1 1 1 0 0 0 2 1 1 0 1 0 0 0 13 0 1584.742 Q14690;B4DH82;B4DES7 Q14690 572 584 PDCD11 Protein RRP5 homolog yes no 2 9.4306E-24 136.48 2 1 0.86985 0.86794 NaN 1 Median 0.86985 0.86794 NaN 1 0 Median NaN NaN NaN 0 0 Median 13882000 5211300 8670300 11600000 5211300 6388800 2281500 0 2281500 5692 1741 5824 14926;14927;14928 23277;23278;23279 23277 2 HELTEISNVDVETQSGK DIDISSPEFKIKIPRHELTEISNVDVETQS LTEISNVDVETQSGKTVIRLPSGSGAASPT R H E G K T 0 0 1 1 0 1 3 1 1 1 1 1 0 0 0 2 2 0 0 2 0 0 17 0 1884.9065 Q09666 Q09666 187 203 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 3.8595E-07 94.09 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13815000 4676800 9138200 13815000 4676800 9138200 0 0 0 5693 1696 5825 14929;14930;14931;14932 23280;23281;23282;23283 23280 4 HENITTAATEIIGAICK MPYAMTPIFDEKMLKHENITTAATEIIGAI NITTAATEIIGAICKHLSWSAYMYYLKHFI K H E C K H 3 0 1 0 1 0 2 1 1 4 0 1 0 0 0 0 3 0 0 0 0 0 17 0 1840.9353 O75691 O75691 1629 1645 UTP20 Small subunit processome component 20 homolog yes yes 3 0.020792 29.274 2 1.5842 1.3358 NaN 1 Median NaN NaN NaN 0 0 Median 1.5842 1.3358 NaN 1 0 Median 3311000 976450 2334600 0 0 0 3311000 976450 2334600 5694 1412 5826 14933;14934 23284;23285 23285 2 HEPGLGGPAER GRRASRSSGRARRGRHEPGLGGPAERGAGE RRGRHEPGLGGPAERGAGEARLEEAVNRWV R H E E R G 1 1 0 0 0 0 2 3 1 0 1 0 0 0 2 0 0 0 0 0 0 0 11 0 1118.5469 Q15554 Q15554 73 83 TERF2 Telomeric repeat-binding factor 2 yes yes 2 0.0017252 65.305 1 1.4854 1.4779 NaN 1 Median 1.4854 1.4779 NaN 1 0 Median NaN NaN NaN 0 0 Median 7816300 3702500 4113800 7816300 3702500 4113800 0 0 0 5695 1762 5827 14935 23286;23287 23286 2 HEPIGYDR TDCVAEIQKNKPYIRHEPIGYDRSRRKYWF KNKPYIRHEPIGYDRSRRKYWFLNRRLIIE R H E D R S 0 1 0 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 8 0 985.46174 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 319 326 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0018583 105.12 2 0.71387 0.72469 NaN 1 Median 0.71387 0.72469 NaN 1 0 Median NaN NaN NaN 0 0 Median 35056000 26085000 8971200 35056000 26085000 8971200 0 0 0 5696 1224 5828 14936;14937 23288;23289;23290 23289 3 HEPLVLFCESCDTLTCR KSRDGERTVYCNVHKHEPLVLFCESCDTLT PLVLFCESCDTLTCRDCQLNAHKDHQYQFL K H E C R D 0 1 0 1 3 0 2 0 1 0 3 0 0 1 1 1 2 0 0 1 0 0 17 0 2135.9438 B2R8R5;Q13263;M0R3C0;M0R2I3 B2R8R5 214 230 TRIM28 Transcription intermediary factor 1-beta yes no 3 2.0992E-05 71.697 1 2 1.5001 1.5536 33.394 3 Plateau 1.511 1.5717 NaN 1 0 Median 1.0507 0.88676 6.8087 2 0 Median 35924000 19789000 16135000 22025000 12084000 9940800 13898000 7704300 6194200 5697 862 5829 14938;14939;14940 23291;23292;23293;23294;23295 23291 5 HEQILVLDPPTDLK ______________________________ KHEQILVLDPPTDLKFKGPFTDVVTTNLKL K H E L K F 0 0 0 2 0 1 1 0 1 1 3 1 0 0 2 0 1 0 0 1 0 0 14 0 1616.8774 A8KA83;Q9P0L0;J3QKM9 A8KA83 4 17 VAPA Vesicle-associated membrane protein-associated protein A yes no 2;3 0.00020707 44.312 1 3 1.3851 1.1441 8.1853 4 Median 1.1373 1.1638 NaN 1 0 Median 1.4185 1.1247 10.018 3 0 Median 25206000 11622000 13584000 14351000 6306800 8044700 10855000 5315500 5539300 5698 791 5830 14941;14942;14943;14944 23296;23297;23298;23299;23300;23301 23296 6 HESAEIFVVCQGFLAPDK QLFRRVQATKPQASRHESAEIFVVCQGFLA AEIFVVCQGFLAPDKVDSKFFDPKFAFKEV R H E D K V 2 0 0 1 1 1 2 1 1 1 1 1 0 2 1 1 0 0 0 2 0 0 18 0 2045.9881 Q8IY81 Q8IY81 188 205 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 0.00014248 59.512 2 1.241 1.0176 NaN 1 Median NaN NaN NaN 0 0 Median 1.241 1.0176 NaN 1 0 Median 8202600 2408900 5793700 0 0 0 8202600 2408900 5793700 5699 1898 5831 14945;14946 23302;23303 23303 2 HEVGALVR LKLVFPGAQRMNRGRHEVGALVRACKANGV QRMNRGRHEVGALVRACKANGVTDLLVVHE R H E V R A 1 1 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 879.49265 H0Y714;Q96G21;B8ZZ47;E7ENR5;B9A008 H0Y714 108 115 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.0075857 82.305 1 1 1.0139 0.96223 11.317 2 Median 0.85621 0.88823 NaN 1 0 Median 1.2005 1.0424 NaN 1 0 Median 40064000 21536000 18529000 37731000 20400000 17332000 2333000 1136000 1197000 5700 1286 5832 14947;14948 23304;23305 23304 2 HEYVLAVR QRKDYTALTKFLPPKHEYVLAVRMTSIQCK TKFLPPKHEYVLAVRMTSIQCKLYQYYLDH K H E V R M 1 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 8 0 985.53451 A4LAA3;P46100;B4DHH8;H0Y3T0;Q5JX93 A4LAA3 1831 1838 ATRX Transcriptional regulator ATRX yes no 2 0.029163 63.306 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5701 672 5833 14949 23306 23306 1 HFADGLETDGTLQK ESFRAKASSLSEELKHFADGLETDGTLQKC KHFADGLETDGTLQKCFEDSNGKASDFSLE K H F Q K C 1 0 0 2 0 1 1 2 1 0 2 1 0 1 0 0 2 0 0 0 0 0 14 0 1530.7314 Q4G1A1;A8K3X3;Q9H410;Q5JW53;Q5JW54;Q5JW57 Q4G1A1 161 174 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 0.00019995 69.346 1 0.90535 0.91636 NaN 1 Median 0.90535 0.91636 NaN 1 0 Median NaN NaN NaN 0 0 Median 10163000 4984000 5178600 10163000 4984000 5178600 0 0 0 5702 727 5834 14950 23307;23308 23307 2 HFCGGTLISPK PHSWPWQVSLRRSSRHFCGGTLISPKWVLT RSSRHFCGGTLISPKWVLTAAHCLDNILAL R H F P K W 0 0 0 0 1 0 0 2 1 1 1 1 0 1 1 1 1 0 0 0 0 0 11 0 1215.607 CON__P06868 CON__P06868 607 617 yes yes 2 0.0011115 85.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4199800 4199800 0 0 0 0 4199800 4199800 0 + 5703 1157 5835 14951 23309 23309 1 HFCPNVPIILVGNK DSLENIPEKWTPEVKHFCPNVPIILVGNKK KHFCPNVPIILVGNKKDLRNDEHTRRELAK K H F N K K 0 0 2 0 1 0 0 1 1 2 1 1 0 1 2 0 0 0 0 2 0 0 14 0 1606.8654 B4DKN9;Q5JR08;A0A024R324;A0A024R0I3;P61586;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;Q9BVT0 B4DKN9 85 98 RHOC;RHOA;hCG_2043376;ARHA Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 2 1.8678E-21 163.38 1 1 1.5974 1.4458 28.142 2 Median 1.7435 1.7641 NaN 1 0 Median 1.4636 1.1849 NaN 1 0 Median 31716000 12644000 19072000 28967000 11683000 17283000 2749600 960690 1788900 5704 48 5836 14952;14953 23310;23311 23310 2 HFDGEDYTCITFQPDLSK TWMNNMMKTSEAKIKHFDGEDYTCITFQPD GEDYTCITFQPDLSKFKMEKLDKDIVALMT K H F S K F 0 0 0 3 1 1 1 1 1 1 1 1 0 2 1 1 2 0 1 0 0 0 18 0 2171.947 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 201 218 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 5.1177E-06 54.764 2 2 0.74582 0.67987 27.024 4 Median 0.52195 0.53612 2.9429 2 0 Median 1.0537 0.85506 1.7722 2 0 Median 37710000 20163000 17547000 24871000 13978000 10893000 12840000 6185600 6653900 5705 1679 5837 14954;14955;14956;14957 23312;23313;23314;23315;23316;23317 23317 5 HFDLNLR QADIVEAVDIASAAKHFDLNLRQFGPYRLN VDIASAAKHFDLNLRQFGPYRLNYSRTGRH K H F L R Q 0 1 1 1 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 913.477 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806 B0UZZ8 188 194 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.037563 60.788 1 0.87197 0.90806 NaN 1 Median 0.87197 0.90806 NaN 1 0 Median NaN NaN NaN 0 0 Median 22250000 12369000 9881000 22250000 12369000 9881000 0 0 0 5706 809 5838 14958 23318 23318 1 HFEELETIMDR LLVETQMKKLEIKLRHFEELETIMDREKEA IKLRHFEELETIMDREKEALEQQRQQLLTE R H F D R E 0 1 0 1 0 0 3 0 1 1 1 0 1 1 0 0 1 0 0 0 0 0 11 0 1418.65 Q58EY4;Q92922;B4DYQ1;B4DYF9;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 913 923 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 0.0056549 53.683 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5892600 0 5892600 5892600 0 5892600 0 0 0 5707 1798;321 5839 14959 23319 23319 244 1 HFELGGDK PNCRSKRMLAIKRCKHFELGGDKKRKGQVI LAIKRCKHFELGGDKKRKGQVIQF______ K H F D K K 0 0 0 1 0 0 1 2 1 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 901.42938 B2R4V2;J3KQN4;Q969Q0;P83881;R4GN19;H0Y5B4;H7BZ11 B2R4V2 90 97 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 2 7.3583E-21 178.99 3 5 0.69652 0.83344 14.692 4 Median 0.6907 0.81765 8.6146 3 0 Median 1.1943 1.0277 NaN 1 0 Median 4371900000 2546400000 1825500000 4101100000 2371800000 1729300000 270850000 174630000 96220000 5708 830 5840 14960;14961;14962;14963;14964;14965;14966;14967 23320;23321;23322;23323;23324;23325;23326;23327;23328;23329;23330;23331;23332;23333;23334;23335 23323 16 HFELGGDKK PNCRSKRMLAIKRCKHFELGGDKKRKGQVI AIKRCKHFELGGDKKRKGQVIQF_______ K H F K K R 0 0 0 1 0 0 1 2 1 0 1 2 0 1 0 0 0 0 0 0 0 0 9 1 1029.5243 B2R4V2;J3KQN4;Q969Q0;P83881;R4GN19;H0Y5B4;H7BZ11 B2R4V2 90 98 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 2;3 3.7242E-05 128.69 3 1 0.70462 0.82459 16.827 4 Median 0.70078 0.81288 2.7479 3 0 Median 1.3141 1.1356 NaN 1 0 Median 173880000 92278000 81599000 169480000 90502000 78982000 4393000 1776100 2616900 5709 830 5841 14968;14969;14970;14971 23336;23337;23338;23339;23340;23341 23339 6 HFIAEYDTSTQDFGEPF QNLHEIGERCVEELKHFIAEYDTSTQDFGE IAEYDTSTQDFGEPF_______________ K H F P F - 1 0 0 2 0 1 2 1 1 1 0 0 0 3 1 1 2 0 1 0 0 0 17 0 2002.8585 F8W0Q9 F8W0Q9 369 385 PPHLN1 yes yes 2 0.049239 32.062 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1802000 0 0 0 0 0 1802000 0 0 5710 1264 5842 14972 23342 23342 1 HFLPASR GLSQKPISSFADFERHFLPASRNRTVGATR SSFADFERHFLPASRNRTVGATRLNQRSSR R H F S R N 1 1 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 7 0 826.44497 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 224 230 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.056031 52.299 1 1.4789 1.2495 NaN 1 Median NaN NaN NaN 0 0 Median 1.4789 1.2495 NaN 1 0 Median 4846400 1867100 2979300 0 0 0 4846400 1867100 2979300 5711 1745 5843 14973 23343 23343 1 HFNAPSHIR FNPFVTSDRSKNRKRHFNAPSHIRRKIMSS SKNRKRHFNAPSHIRRKIMSSPLSKELRQK R H F I R R 1 1 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 0 9 0 1077.5468 Q6IBH6;P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KTJ8;A0A024RBF6;J3KSS0 Q6IBH6 18 26 RPL26;hCG_26523 60S ribosomal protein L26 yes no 3 5.3549E-06 105.52 1 0.67074 0.69501 NaN 1 Median 0.67074 0.69501 NaN 1 0 Median NaN NaN NaN 0 0 Median 20508000 12045000 8463200 20508000 12045000 8463200 0 0 0 5712 1629 5844 14974 23344;23345 23344 2 HFNAPSHVR FNPFVTSDRSKNRKRHFNAPSHVRRKIMSS SKNRKRHFNAPSHVRRKIMSSPLSKELRQK R H F V R R 1 1 1 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1063.5312 E5RIT6;Q9UNX3;E5RHH1 E5RIT6 18 26 RPL26L1 60S ribosomal protein L26-like 1 yes no 3 0.0044925 47.187 1 0.72441 0.78645 NaN 1 Median 0.72441 0.78645 NaN 1 0 Median NaN NaN NaN 0 0 Median 2513700 1532200 981550 2513700 1532200 981550 0 0 0 5713 1214 5845 14975 23346 23346 1 HFNSMSGPATLR PKTYGESMLYLDGQRHFNSMSGPATLRKDY GQRHFNSMSGPATLRKDYLVEP________ R H F L R K 1 1 1 0 0 0 0 1 1 0 1 0 1 1 1 2 1 0 0 0 0 0 12 0 1316.6296 Q9Y305;Q9H2R8 Q9Y305 421 432 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 0.0019735 60.518 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15839000 0 15839000 15839000 0 15839000 0 0 0 5714 2130 5846 14976;14977 23347;23348;23349 23348 1964 3 HFSALR TFVNKVESALAQQAKHFSALRDVIKALRLA ESALAQQAKHFSALRDVIKALRLAMQLEEQ K H F L R D 1 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 0 0 0 6 0 729.39221 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1;A0A0A0MS76;A8MXY4;A6NN14 A8K3S3 693 698 KIF2C;ZNF99;ZNF729 Kinesin-like protein;Kinesin-like protein KIF2C;Zinc finger protein 99;Zinc finger protein 729 yes no 2 0.0030292 145 1 0.82163 0.90921 NaN 1 Median 0.82163 0.90921 NaN 1 0 Median NaN NaN NaN 0 0 Median 60649000 33302000 27347000 60649000 33302000 27347000 0 0 0 5715 626 5847 14978 23350 23350 1 HFSTEDGIFQGQR GETQMLVGCADRTVKHFSTEDGIFQGQRHC VKHFSTEDGIFQGQRHCPGGEGMFRGLAQA K H F Q R H 0 1 0 1 0 2 1 2 1 1 0 0 0 2 0 1 1 0 0 0 0 0 13 0 1520.7008 Q6RFH5;E9PS41;B4E018 Q6RFH5 69 81 WDR74 WD repeat-containing protein 74 yes no 2;3 2.614E-19 148.32 3 0.95136 1.0402 6.4916 3 Median 0.95136 1.0402 6.4916 3 0 Median NaN NaN NaN 0 0 Median 76076000 38396000 37681000 76076000 38396000 37681000 0 0 0 5716 1859 5848 14979;14980;14981 23351;23352;23353;23354;23355 23354 5 HFSVEGQLEFR YKSLTNDWEDHLAVKHFSVEGQLEFRALLF LAVKHFSVEGQLEFRALLFIPRRAPFDLFE K H F F R A 0 1 0 0 0 1 2 1 1 0 1 0 0 2 0 1 0 0 0 1 0 0 11 0 1347.6571 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;Q58FF7;Q58FG1;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7;Q14568 B4DMA2 282 292 HSP90AB1;HSP90AB3P;HSP90AA4P;EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-alpha A4;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 no no 2;3 2.8749E-12 137.95 4 4 1.5229 1.3191 39.215 7 Median 2.3096 2.5516 8.0181 3 0 Plateau 1.4541 1.1836 6.3904 4 0 Median 130710000 41857000 88858000 98104000 29348000 68756000 32610000 12509000 20101000 5717 379;1348 5849 14982;14983;14984;14985;14986;14987;14988;14989 23356;23357;23358;23359;23360;23361;23362;23363;23364;23365;23366;23367;23368;23369;23370 23361 15 HFTEDIQTR KVKIADLGNACWVHKHFTEDIQTRQYRSLE ACWVHKHFTEDIQTRQYRSLEVLIGSGYNT K H F T R Q 0 1 0 1 0 1 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 9 0 1145.5465 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9;H7C2I2;H7C521;H7C5L6;A8MPP7;A8MPY5;E7ETV6;Q59GF4;Q9UPE1;A0A024R704;P78362 Q96SB4 507 515 SRPK1;SRPK3;SRPK2 SRSF protein kinase 1;SRSF protein kinase 3;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal no no 2 0.001702 81.972 1 1 1.4598 1.4399 50.464 2 Median 1.9154 2.0574 NaN 1 0 Median 1.1126 1.0078 NaN 1 0 Median 49088000 14004000 35085000 46912000 12870000 34042000 2176800 1134100 1042700 5718 1988;212 5850 14990;14991 23371;23372 23371 2 HFTIDDFEIGR KVMENSSGTPNILTRHFTIDDFEIGRPLGK ILTRHFTIDDFEIGRPLGKGKFGNVYLARE R H F G R P 0 1 0 2 0 0 1 1 1 2 0 0 0 2 0 0 1 0 0 0 0 0 11 0 1348.6412 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41;J3KRF8;J3KRJ2 Q96GD4 71 81 AURKB Aurora kinase B no no 2 0.0068776 63.076 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4163800 0 4163800 4163800 0 4163800 0 0 0 5719 881;1967 5851 14992 23373 23373 1 HFTIDDFEIGRPLGK KVMENSSGTPNILTRHFTIDDFEIGRPLGK HFTIDDFEIGRPLGKGKFGNVYLAREKKSH R H F G K G 0 1 0 2 0 0 1 2 1 2 1 1 0 2 1 0 1 0 0 0 0 0 15 1 1743.8944 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41;J3KRF8;J3KRJ2 Q96GD4 71 85 AURKB Aurora kinase B no no 3 0.00010232 66.215 2 2.1912 1.8888 6.5104 2 Median NaN NaN NaN 0 0 Median 2.1912 1.8888 6.5104 2 0 Median 52779000 16573000 36206000 0 0 0 52779000 16573000 36206000 5720 881;1967 5852 14993;14994 23374;23375;23376;23377;23378 23374 5 HFVLDECDK LALVRNRSFSLKNVKHFVLDECDKMLEQLD SLKNVKHFVLDECDKMLEQLDMRRDVQEIF K H F D K M 0 0 0 2 1 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1161.5125 O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3;A0A0D9SEM9 O00148 191 199 DDX39A;DDX39 ATP-dependent RNA helicase DDX39A no no 2 0.00016983 107.57 2 1.3531 1.3535 17.457 2 Median 1.3531 1.3535 17.457 2 0 Median NaN NaN NaN 0 0 Median 54568000 24731000 29837000 54568000 24731000 29837000 0 0 0 5721 1359;521 5853 14995;14996 23379;23380;23381 23379 3 HGATHVFASK NLNKIGKDEMLQMIRHGATHVFASKESEIT LQMIRHGATHVFASKESEITDEDIDGILER R H G S K E 2 0 0 0 0 0 0 1 2 0 0 1 0 1 0 1 1 0 0 1 0 0 10 0 1053.5356 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;D7EZH4 O60264 656 665 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2;3 0.00013542 70.908 3 1 2.588 2.6818 36.746 3 Median 2.5261 2.6079 3.9491 2 0 Median 5.8295 4.9194 NaN 1 0 Median 26382000 6817300 19565000 24280000 6477500 17802000 2102200 339820 1762400 5722 1391 5854 14997;14998;14999;15000 23382;23383;23384;23385 23382 4 HGDEIITSTTSNYETQTFSSK EQSQLTATQTRTVNKHGDEIITSTTSNYET TSTTSNYETQTFSSKTEWRVRAISAANLHL K H G S K T 0 0 1 1 0 1 2 1 1 2 0 1 0 1 0 4 5 0 1 0 0 0 21 0 2345.0659 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2050 2070 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.019684 19.022 1 0.96849 0.76825 NaN 1 Median NaN NaN NaN 0 0 Median 0.96849 0.76825 NaN 1 0 Median 4542400 2368600 2173800 0 0 0 4542400 2368600 2173800 5723 1854 5855 15001 23386 23386 1 HGDLPDIQIK KMKQDAQVVLYRSYRHGDLPDIQIKHSSLI YRSYRHGDLPDIQIKHSSLITPLQAVAQRD R H G I K H 0 0 0 2 0 1 0 1 1 2 1 1 0 0 1 0 0 0 0 0 0 0 10 0 1134.6033 P78527 P78527 2777 2786 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.1674E-29 157.59 2 2 0.59907 0.55558 73.761 2 Median 0.84352 0.93596 NaN 1 0 Median 0.42546 0.32979 NaN 1 0 Median 100670000 73516000 27152000 78446000 55633000 22813000 22222000 17883000 4338700 5724 1665 5856 15002;15003;15004;15005 23387;23388;23389;23390;23391 23389 5 HGDVITIIDR TQVNGSVIDEPVRLKHGDVITIIDRSFRYE PVRLKHGDVITIIDRSFRYENESLQNGRKS K H G D R S 0 1 0 2 0 0 0 1 1 3 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1137.6142 P46013 P46013 84 93 MKI67 Antigen KI-67 yes yes 2 3.9302E-30 175.91 1 1.7382 1.9659 NaN 1 Median 1.7382 1.9659 NaN 1 0 Median NaN NaN NaN 0 0 Median 103650000 34610000 69044000 103650000 34610000 69044000 0 0 0 5725 1569 5857 15006 23392;23393 23392 2 HGEVCPAGWK DETLRLVQAFQFTDKHGEVCPAGWKPGSDT QFTDKHGEVCPAGWKPGSDTIKPDVQKSKE K H G W K P 1 0 0 0 1 0 1 2 1 0 0 1 0 0 1 0 0 1 0 1 0 0 10 0 1139.5182 Q06830;B2R4P2;A0A0A0MRQ5;H7C3T4;V9HW63;Q13162 Q06830 169 178 PRDX1;PRDX4;HEL-S-97n Peroxiredoxin-1;Peroxiredoxin-4 yes no 2 1.621E-09 131.06 2 1.904 1.9573 46.427 2 Median 1.904 1.9573 46.427 2 0 Median NaN NaN NaN 0 0 Median 43483000 10962000 32521000 43483000 10962000 32521000 0 0 0 5726 1690 5858 15007;15008 23394;23395 23395 2 HGFCGIPITDTGR SPKDRVRDVFEAKARHGFCGIPITDTGRMG ARHGFCGIPITDTGRMGSRLVGIISSRDID R H G G R M 0 1 0 1 1 0 0 3 1 2 0 0 0 1 1 0 2 0 0 0 0 0 13 0 1429.6772 H0Y4R1;P12268;B7Z1G4;Q6QE17;E7ETK5 H0Y4R1 69 81 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 0.00040121 85.377 2 1 1.105 1.0414 2.2955 2 Median 0.99112 1.0246 NaN 1 0 Median 1.232 1.0585 NaN 1 0 Median 38824000 8801300 30023000 30843000 4988200 25855000 7981200 3813100 4168100 5727 1282 5859 15009;15010;15011 23396;23397;23398;23399 23397 4 HGFLEEFITPIVK LLINFIHHNWPSLLKHGFLEEFITPIVKAS LKHGFLEEFITPIVKASKNKQELSFYSIPE K H G V K A 0 0 0 0 0 0 2 1 1 2 1 1 0 2 1 0 1 0 0 1 0 0 13 0 1528.829 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 560 572 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 5.493E-48 171.62 5 4 1.0735 0.84279 17.585 7 Median 0.6127 0.68206 6.7402 3 0 Plateau 1.0979 0.88428 4.7755 4 0 Median 156840000 80101000 76735000 93650000 50252000 43398000 63186000 29849000 33337000 5728 1679 5860 15012;15013;15014;15015;15016;15017;15018;15019;15020 23400;23401;23402;23403;23404;23405;23406;23407;23408;23409;23410;23411;23412;23413;23414 23401 15 HGGGGGGFGGGGFGSR GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS GGGGGGFGGGGFGSRSLVGLGGTKSISISV R H G S R S 0 1 0 0 0 0 0 11 1 0 0 0 0 2 0 1 0 0 0 0 0 0 16 0 1319.5755 CON__P35908;P35908 CON__P35908 46 61 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2;3 3.345E-35 144.1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35500000 35500000 0 35500000 35500000 0 0 0 0 + 5729 1166 5861 15021;15022 23415;23416 23415 2 HGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGK ______________________________ GGSAAVAAATASGGKSGGGSCGGGGSYSAS K H G G K S 7 0 0 0 0 0 0 17 1 0 0 1 0 1 1 5 1 0 0 1 0 0 35 0 2629.1865 J3QQW9;Q15022;A8K1U9 J3QQW9 6 40 SUZ12 Polycomb protein SUZ12 yes no 3 2.4148E-45 122.7 2 2 1.4865 1.3827 17.297 4 Median 1.099 1.2211 1.0751 2 0 Median 2.054 1.6335 7.0578 2 0 Median 140650000 62009000 78644000 115210000 53681000 61527000 25445000 8327700 17117000 5730 1336 5862 15023;15024;15025;15026 23417;23418;23419;23420;23421;23422;23423;23424 23421 8 HGGSPQPLATTPLSQEPVNPPSEASPTR TGPEPPAPTPLLAERHGGSPQPLATTPLSQ SQEPVNPPSEASPTRDRSPPKSPEKLPQSS R H G T R D 2 1 1 0 0 2 2 2 1 0 2 0 0 0 7 4 3 0 0 1 0 0 28 0 2851.41 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8 A0A140VK53 374 401 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 3 0.00065121 24.653 1 1 1.2809 1.207 63.885 2 Median 1.9253 1.8963 NaN 1 0 Median 0.85224 0.76829 NaN 1 0 Median 15244000 7273100 7971000 13185000 6185200 6999800 2059200 1088000 971240 5731 619 5863 15027;15028 23425;23426;23427;23428 23425 4 HGGTIPIVPTAEFQDR LLMSVQESLERKFGKHGGTIPIVPTAEFQD GGTIPIVPTAEFQDRISGASEKDIVHSGLA K H G D R I 1 1 0 1 0 1 1 2 1 2 0 0 0 1 2 0 2 0 0 1 0 0 16 0 1736.8846 B4E0N9;B4DMG8;B4DMF5;B3KT18;Q53GW3;E9KL48;P00367;Q14400 B4E0N9 413 428 GLUD1 Glutamate dehydrogenase;Glutamate dehydrogenase 1, mitochondrial yes no 3 0.030214 20.939 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1072300 1072300 0 0 0 0 1072300 1072300 0 5732 941 5864 15029 23429 23429 1 HGIPTAQWK QLESSKRFAKEFMDRHGIPTAQWKAFTKPE KEFMDRHGIPTAQWKAFTKPEEACSFILSA R H G W K A 1 0 0 0 0 1 0 1 1 1 0 1 0 0 1 0 1 1 0 0 0 0 9 0 1036.5454 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;C9JZG2;C9JKQ7 Q3B7A7 117 125 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.0015777 85.38 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4309700 4309700 0 4309700 4309700 0 0 0 0 5733 1507 5865 15030 23430 23430 1 HGLINFGIYK SDTVLVHRVHSYLERHGLINFGIYKRIKPL SYLERHGLINFGIYKRIKPLPTKKTGKVII R H G Y K R 0 0 1 0 0 0 0 2 1 2 1 1 0 1 0 0 0 0 1 0 0 0 10 0 1160.6342 A8K2R3;O60341 A8K2R3 137 146 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.0099866 53.968 1 1.3156 1.0437 NaN 1 Median NaN NaN NaN 0 0 Median 1.3156 1.0437 NaN 1 0 Median 2352300 1045700 1306600 0 0 0 2352300 1045700 1306600 5734 711 5866 15031 23431 23431 1 HGLLVPNNTTDQELQHIR IAGCRIIGRMCVGNRHGLLVPNNTTDQELQ LVPNNTTDQELQHIRNSLPDTVQIRRVEER R H G I R N 0 1 2 1 0 2 1 1 2 1 3 0 0 0 1 0 2 0 0 1 0 0 18 0 2084.0763 P56537;B7ZBH1 P56537 68 85 EIF6 Eukaryotic translation initiation factor 6 yes no 3;4 8.1086E-17 114.63 4 3 1.0937 0.95974 4.2225 5 Median 0.86848 0.93742 4.8171 2 0 Median 1.0996 0.95974 4.8834 3 0 Median 408890000 188970000 219910000 230540000 102640000 127890000 178350000 86332000 92019000 5735 1619 5867 15032;15033;15034;15035;15036;15037;15038 23432;23433;23434;23435;23436;23437;23438;23439;23440;23441;23442;23443;23444 23436 13 HGLQLGAQSPGR TFSSRLILEKHVQVRHGLQLGAQSPGRGTT QVRHGLQLGAQSPGRGTTLARGSSARAQGP R H G G R G 1 1 0 0 0 2 0 3 1 0 2 0 0 0 1 1 0 0 0 0 0 0 12 0 1219.6422 Q8N1G0;A6PVV7 Q8N1G0 1049 1060 ZNF687 Zinc finger protein 687 yes no 2 3.4869E-08 117.52 2 1 0.94347 1.0186 26.088 3 Median 0.93942 0.98926 4.138 2 0 Median 1.7868 1.5499 NaN 1 0 Median 48607000 26133000 22474000 45941000 25301000 20640000 2665800 831830 1833900 5736 1905 5868 15039;15040;15041 23445;23446;23447 23446 2 HGLTYATIDGSVNPK QWTNMLKVVALHLKKHGLTYATIDGSVNPK HGLTYATIDGSVNPKQRMDLVEAFNHSRGP K H G P K Q 1 0 1 1 0 0 0 2 1 1 1 1 0 0 1 1 2 0 1 1 0 0 15 0 1571.7944 A0A024R0F1;Q9UNY4;X6RI15 A0A024R0F1 1032 1046 TTF2 Transcription termination factor 2 yes no 2 1.2241E-15 120.57 1 1 1.9412 1.5105 NaN 1 Median NaN NaN NaN 0 0 Median 1.9412 1.5105 NaN 1 0 Median 14077000 11827000 2250100 10706000 10706000 0 3370800 1120800 2250100 5737 44 5869 15042;15043 23448;23449 23448 2 HGLVPFAFVR FYKYGRIREIELKNRHGLVPFAFVRFEDPR ELKNRHGLVPFAFVRFEDPRDAEDAIYGRN R H G V R F 1 1 0 0 0 0 0 1 1 0 1 0 0 2 1 0 0 0 0 2 0 0 10 0 1141.6396 Q13242;A8K3M9;H0YIB4;S4R3G0;B4DFT9 Q13242 49 58 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.0088235 66.682 1 2 1.1671 1.0534 37.357 3 Median 1.7025 1.7054 NaN 1 0 Median 1.0548 0.9279 17.934 2 0 Median 23554000 9039900 14514000 18608000 6519500 12089000 4945600 2520400 2425200 5738 1709 5870 15044;15045;15046 23450;23451;23452;23453 23450 4 HGNYFAYVQMFNSR FVVFRHPVLIFITEKHGNYFAYVQMFNSRI KHGNYFAYVQMFNSRILTKYTLLLGQDENS K H G S R I 1 1 2 0 0 1 0 1 1 0 0 0 1 2 0 1 0 0 2 1 0 0 14 0 1732.778 Q9H8H0;J3QR28 Q9H8H0 174 187 NOL11 Nucleolar protein 11 yes no 3 0.047906 17.962 1 1.4531 1.2884 NaN 1 Median NaN NaN NaN 0 0 Median 1.4531 1.2884 NaN 1 0 Median 1251900 488310 763580 0 0 0 1251900 488310 763580 5739 2042 5871 15047 23454 23454 1 HGPLALVDK ITYMHSEGILAGELKHGPLALVDKLMPVIM LAGELKHGPLALVDKLMPVIMIIMRDHTYA K H G D K L 1 0 0 1 0 0 0 1 1 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 948.53927 Q06210 Q06210 595 603 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.001665 82.452 2 2.374 2.5913 1.6571 2 Median 2.374 2.5913 1.6571 2 0 Median NaN NaN NaN 0 0 Median 85503000 25961000 59542000 85503000 25961000 59542000 0 0 0 5740 1688 5872 15048;15049 23455;23456 23455 2 HGSLGFLPR ______________________________ KFSAPRHGSLGFLPRKRSSRHRGKVKSFPK R H G P R K 0 1 0 0 0 0 0 2 1 0 2 0 0 1 1 1 0 0 0 0 0 0 9 0 982.53485 P39023;Q96QL0;H7C422;H7C3M2;B4DN06;F8WCR1;B3KS36 P39023 11 19 RPL3 60S ribosomal protein L3 no no 2;3 9.8711E-34 171.38 6 3 1.0305 1.0574 12.585 4 Median 0.99204 1.1679 1.4039 2 0 Median 1.0866 0.94244 3.6142 2 0 Median 1302700000 723400000 579280000 1170200000 659710000 510500000 132460000 63681000 68780000 5741 1554;936 5873 15050;15051;15052;15053;15054;15055;15056;15057;15058 23457;23458;23459;23460;23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471;23472;23473;23474;23475;23476;23477 23460 21 HGVQELEIELQSQLSK GQEVQSSAKEVTQLRHGVQELEIELQSQLS GVQELEIELQSQLSKKAALEKSLEDTKNRY R H G S K K 0 0 0 0 0 3 3 1 1 1 3 1 0 0 0 2 0 0 0 1 0 0 16 0 1836.9581 CON__P35527;P35527;K7EQQ3 CON__P35527 375 390 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 4.2722E-36 154.65 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 459590000 459590000 0 364380000 364380000 0 95206000 95206000 0 + 5742 1165 5874 15059;15060;15061;15062;15063;15064 23478;23479;23480;23481;23482;23483;23484;23485 23483 8 HGVVPLATYMR KRRGTRYMFSRPFRKHGVVPLATYMRIYKK PFRKHGVVPLATYMRIYKKGDIVDIKGMGT K H G M R I 1 1 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 1 2 0 0 11 0 1242.6543 Q6IAX2;P46778;Q59GK9;G3V1B3;M0R181 Q6IAX2 22 32 RPL21 60S ribosomal protein L21 yes no 2;3 0.00086521 64.841 4 3 1.4033 1.3808 89.532 6 Median 2.0102 2.345 2.1327 3 0 Median 0.47148 0.39181 44.184 3 0 Median 1094400000 368680000 725770000 1063600000 349990000 713610000 30853000 18692000 12161000 5743 1571 5875;5876 15065;15066;15067;15068;15069;15070;15071 23486;23487;23488;23489;23490;23491;23492;23493;23494;23495;23496;23497 23486 1351 12 HGVVSCSGVAR DFTASNGWLDRFRRRHGVVSCSGVARARAR FRRRHGVVSCSGVARARARNAAPRTPAAPA R H G A R A 1 1 0 0 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 3 0 0 11 0 1127.5506 P07199 P07199 130 140 CENPB Major centromere autoantigen B yes yes 2 7.8729E-05 98.055 2 2 1.4897 1.4399 23.826 4 Median 1.0797 1.1566 33.243 2 0 Median 1.7788 1.4691 5.1087 2 0 Median 99079000 44023000 55056000 79061000 37127000 41935000 20018000 6896200 13122000 5744 1450 5877 15072;15073;15074;15075 23498;23499;23500;23501;23502 23499 5 HGYAPSDLPVK KIYQVLDFRIRCGMKHGYAPSDLPVKAKRS CGMKHGYAPSDLPVKAKRSTYNYSLPITVK K H G V K A 1 0 0 1 0 0 0 1 1 0 1 1 0 0 2 1 0 0 1 1 0 0 11 0 1182.6033 Q9Y5Q8;Q5T7U1;Q5T7U0;B7Z1V3;H7BY84;Q9NXK9;H0Y5D2 Q9Y5Q8 329 339 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 7.9225E-05 98.033 1 2 1.8828 1.6493 6.3146 3 Median 1.5485 1.6493 NaN 1 0 Median 1.9623 1.6231 8.8335 2 0 Median 27134000 12715000 14418000 23249000 11276000 11974000 3884200 1439900 2444300 5745 2149 5878 15076;15077;15078 23503;23504;23505;23506;23507 23503 5 HGYIGEFEIIDDHR PCSKVIVRFLTVMMKHGYIGEFEIIDDHRA KHGYIGEFEIIDDHRAGKIVVNLTGRLNKC K H G H R A 0 1 0 2 0 0 2 2 2 3 0 0 0 1 0 0 0 0 1 0 0 0 14 0 1699.7954 B2R4W8;P62244;I3L3P7;A8K7H3;I3L246;H3BN98 B2R4W8 44 57 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 3 9.2443E-05 45.992 2 0.99707 0.84473 0.43979 2 Median NaN NaN NaN 0 0 Median 0.99707 0.84473 0.43979 2 0 Median 13771000 6485000 7285900 0 0 0 13771000 6485000 7285900 5746 831 5879 15079;15080 23508;23509;23510;23511 23509 4 HIAVFPCK KYRQDYKKQKQEEFKHIAVFPCKIKILPQY QKQEEFKHIAVFPCKIKILPQYIFNSRDPI K H I C K I 1 0 0 0 1 0 0 0 1 1 0 1 0 1 1 0 0 0 0 1 0 0 8 0 970.50586 Q8N5A0;A0A087WUT6;O60841;B3KM86;D3DVI5 Q8N5A0 1086 1093 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.00020055 114.54 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5747 414 5880 15081 23512 23512 1 HIDFSLR VVNIPSFIVRLDSQKHIDFSLRSPYGGGRP IVRLDSQKHIDFSLRSPYGGGRPGRVKRKN K H I L R S 0 1 0 1 0 0 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 886.4661 A0A024R4M0;P46781;A5D904 A0A024R4M0 156 162 RPS9 40S ribosomal protein S9 yes no 2 0.026488 88.029 2 0.81803 0.70165 0.77868 2 Median NaN NaN NaN 0 0 Median 0.81803 0.70165 0.77868 2 0 Median 54364000 28760000 25604000 0 0 0 54364000 28760000 25604000 5748 157 5881 15082;15083 23513;23514 23514 2 HIEIFTDLSSR DVIQHETIGKKFEKRHIEIFTDLSSRFSKS FEKRHIEIFTDLSSRFSKSQLDIIIHSLKK R H I S R F 0 1 0 1 0 0 1 0 1 2 1 0 0 1 0 2 1 0 0 0 0 0 11 0 1316.6725 P13010;Q53TC2;C9JZ81 P13010 131 141 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.00038966 82.287 1 2 0.33962 0.39543 NaN 1 Median 0.33962 0.39543 NaN 1 0 Median NaN NaN NaN 0 0 Median 76342000 60528000 15814000 61172000 49814000 11358000 15169000 10714000 4455300 5749 1476 5882 15084;15085;15086 23515;23516;23517;23518 23515 4 HIEVEVR PSKQLLSTIMKDSEKHIEVEVRKFLALKQT TIMKDSEKHIEVEVRKFLALKQTPDFHTVI K H I V R K 0 1 0 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 2 0 0 7 0 880.47667 Q9H8H0;J3QR28 Q9H8H0 412 418 NOL11 Nucleolar protein 11 yes no 2 0.020094 94.407 1 2 1.1684 0.98269 2.1036 3 Median 0.87143 0.99554 NaN 1 0 Median 1.1845 0.96895 1.9911 2 0 Median 177850000 94316000 83538000 150890000 81984000 68906000 26964000 12332000 14632000 5750 2042 5883 15087;15088;15089 23519;23520;23521;23522 23519 4 HIFLIR ELASKLDHYKAKATRHIFLIRHSQYHVDGS DHYKAKATRHIFLIRHSQYHVDGSLEKDRT R H I I R H 0 1 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 0 6 0 797.49119 Q96HS1 Q96HS1 99 104 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.046127 75.94 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5751 1972 5884 15090 23523 23523 1 HIIYVDNK ESKLKTALLDISCVKHIIYVDNKAINKAEY LDISCVKHIIYVDNKAINKAEYPEGFEIHS K H I N K A 0 0 1 1 0 0 0 0 1 2 0 1 0 0 0 0 0 0 1 1 0 0 8 0 1000.5342 Q8TAF6;O60488;B4DH39 Q8TAF6 183 190 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.0050081 89.296 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4349600 0 4349600 4349600 0 4349600 0 0 0 5752 1394 5885 15091 23524 23524 1 HILGFDTGDAVLNEAAQILR KANQTKEGLPVALDKHILGFDTGDAVLNEA DTGDAVLNEAAQILRLLHIEELRELQTKIN K H I L R L 3 1 1 2 0 1 1 2 1 2 3 0 0 1 0 0 1 0 0 1 0 0 20 0 2152.1277 Q5RLJ0;Q549M8;Q9Y224 Q5RLJ0 186 205 C14orf166 UPF0568 protein C14orf166 yes no 2;3 2.3564E-65 180.1 3 1.585 1.5698 10.141 3 Median 1.585 1.5698 10.141 3 0 Median NaN NaN NaN 0 0 Median 285370000 115250000 170120000 285370000 115250000 170120000 0 0 0 5753 1793 5886 15092;15093;15094 23525;23526;23527;23528;23529 23525 5 HILILQNK QTSEHLAAIEIMKLKHILILQNKIDLVKES IEIMKLKHILILQNKIDLVKESQAKEQYEQ K H I N K I 0 0 1 0 0 1 0 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 8 0 977.6022 P41091;Q2VIR3;F8W810 P41091 184 191 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.0065352 86.838 1 2 1.0061 0.85161 71.967 3 Median 2.8488 2.8949 NaN 1 0 Median 0.98481 0.8328 3.1585 2 0 Median 13735000 4103400 9631300 10295000 2427800 7866800 3440100 1675600 1764500 5754 1559 5887 15095;15096;15097 23530;23531;23532;23533 23530 4 HILLAVANDEELNQLLK GNAARDNKKGRVTPRHILLAVANDEELNQL LLAVANDEELNQLLKGVTIASGGVLPNIHP R H I L K G 2 0 2 1 0 1 2 0 1 1 5 1 0 0 0 0 0 0 0 1 0 0 17 0 1932.068 O75367;D6RCF2 O75367 80 96 H2AFY Core histone macro-H2A.1;Histone H2A no no 2;3 8.8182E-128 242.79 10 13 1.1263 1.0348 26.976 18 Median 1.0712 1.2584 11.819 9 0 Median 1.1385 0.97008 26.668 9 0 Median 3429800000 1612100000 1817600000 2251300000 1086800000 1164500000 1178400000 525330000 653080000 5755 1401 5888 15098;15099;15100;15101;15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112;15113;15114;15115;15116;15117;15118;15119;15120 23534;23535;23536;23537;23538;23539;23540;23541;23542;23543;23544;23545;23546;23547;23548;23549;23550;23551;23552;23553;23554;23555;23556;23557;23558;23559;23560;23561;23562;23563;23564;23565;23566;23567;23568;23569;23570;23571;23572;23573;23574;23575;23576;23577;23578;23579;23580;23581;23582;23583;23584 23554 49 HIMGQNVADYMR YDSESKEFNAEVHRKHIMGQNVADYMRYLM HRKHIMGQNVADYMRYLMEEDEDAYKKQFS K H I M R Y 1 1 1 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 1 1 0 0 12 0 1433.6544 A2RUM7;P46777;Q59GX9;B3KTM6 A2RUM7 198 209 RPL5 60S ribosomal protein L5 yes no 2;3 2.902E-05 101.39 3 1 2.9662 3.3776 2.4542 2 Median 2.9662 3.3776 2.4542 2 0 Median NaN NaN NaN 0 0 Median 273120000 76273000 196850000 268880000 72034000 196850000 4238500 4238500 0 5756 653 5889;5890 15121;15122;15123;15124 23585;23586;23587;23588;23589;23590 23585 505;506 6 HINDSAPEVR LPKSLLKPFCAALLKHINDSAPEVRDAAFE AALLKHINDSAPEVRDAAFEALGTALKVVG K H I V R D 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 10 0 1136.5574 Q14008 Q14008 447 456 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0032667 65.305 2 0.83684 0.84787 26.312 2 Median 0.83684 0.84787 26.312 2 0 Median NaN NaN NaN 0 0 Median 17280000 10082000 7198100 17280000 10082000 7198100 0 0 0 5757 1725 5891 15125;15126 23591;23592 23591 1 HINMDGTINVDDFK KTNVALMCMLREIGKHINMDGTINVDDFKI KHINMDGTINVDDFKIIYIAPMRSLVQEMV K H I F K I 0 0 2 3 0 0 0 1 1 2 0 1 1 1 0 0 1 0 0 1 0 0 14 0 1617.7457 O75643;A4FU77;Q9H8B9;Q5ZF01 O75643 524 537 SNRNP200;ASCC3L1 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 8.6845E-05 72.29 2 1.4462 1.4761 8.7348 2 Median 1.4462 1.4761 8.7348 2 0 Median NaN NaN NaN 0 0 Median 27150000 11805000 15345000 27150000 11805000 15345000 0 0 0 5758 1411 5892 15127;15128 23593;23594;23595 23594 1091 3 HINPVAASLIQK ETYLRIKKNEYSIPKHINPVAASLIQKMLQ IPKHINPVAASLIQKMLQTDPTARPTINEL K H I Q K M 2 0 1 0 0 1 0 0 1 2 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1289.7456 P53350;B2R841;B4E083;Q59GD0;D3DWF3;I3L2H5;I3L309 P53350 273 284 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 1.0321E-08 123.01 2 0.97709 1.0046 4.9192 2 Median 0.97709 1.0046 4.9192 2 0 Median NaN NaN NaN 0 0 Median 36805000 19661000 17145000 36805000 19661000 17145000 0 0 0 5759 1604 5893 15129;15130 23596;23597;23598;23599 23599 4 HITSEADSDPGNPVELCK TESSQTSISLESDLKHITSEADSDPGNPVE SEADSDPGNPVELCKTQKQSTTTLNKKDLP K H I C K T 1 0 1 2 1 0 2 1 1 1 1 1 0 0 2 2 1 0 0 1 0 0 18 0 1967.8895 Q562F6;B7Z7S9 Q562F6 1025 1042 SGOL2 Shugoshin-like 2 yes no 3 0.031374 17.824 1 2.7648 2.3034 NaN 1 Median NaN NaN NaN 0 0 Median 2.7648 2.3034 NaN 1 0 Median 1769300 471070 1298200 0 0 0 1769300 471070 1298200 5760 1795 5894 15131 23600 23600 1 HITVVHK PLCTYETRRKRDVIRHITVVHKKSSRYLGK RRKRDVIRHITVVHKKSSRYLGKITASLEI R H I H K K 0 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 1 0 0 2 0 0 7 0 832.49192 Q2TB10;B7Z4V7 Q2TB10 537 543 ZNF800 Zinc finger protein 800 yes no 2 0.014567 99.919 2 1.0663 1.0673 9.3458 2 Median 1.0663 1.0673 9.3458 2 0 Median NaN NaN NaN 0 0 Median 14291000 6314500 7976800 14291000 6314500 7976800 0 0 0 5761 1777 5895 15132;15133 23601;23602 23601 2 HIVEWNVQTCK WHQDSGCLYSCSDDKHIVEWNVQTCKVKCK SDDKHIVEWNVQTCKVKCKWKGDNSSVSSL K H I C K V 0 0 1 0 1 1 1 0 1 1 0 1 0 0 0 0 1 1 0 2 0 0 11 0 1412.6871 Q15061;C9JEE7 Q15061 149 159 WDR43 WD repeat-containing protein 43 yes no 2;3 3.0366E-05 100.88 1 2 1.1949 0.97311 35.036 3 Median 0.63918 0.67223 NaN 1 0 Median 1.3838 1.1479 23.367 2 0 Median 43829000 23460000 20369000 35025000 19599000 15426000 8803500 3860700 4942900 5762 1752 5896 15134;15135;15136 23603;23604;23605;23606;23607 23607 5 HIYYITGETK VSLKDYCTRMKENQKHIYYITGETKDQVAN KENQKHIYYITGETKDQVANSAFVERLRKH K H I T K D 0 0 0 0 0 0 1 1 1 2 0 1 0 0 0 0 2 0 2 0 0 0 10 0 1223.6186 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7;Q58FG0 K9JA46 490 499 EL52;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 2 1.2687E-08 123.35 1 1 2.2274 2.102 41.702 2 Median 2.667 2.8229 NaN 1 0 Median 1.8602 1.5652 NaN 1 0 Median 25044000 7119500 17925000 23555000 6581300 16973000 1489400 538200 951240 5763 1348 5897 15137;15138 23608;23609 23608 2 HLAAVEER TAAAAALASAATKAKHLAAVEERKIKSLVA SAATKAKHLAAVEERKIKSLVALLVETQMK K H L E R K 2 1 0 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 923.48248 Q58EY4;Q92922;B4DYQ1;B4DYF9;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 883 890 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 0.0021864 109.01 2 1 1.0164 0.95596 30.512 2 Median 0.74183 0.77045 NaN 1 0 Median 1.3926 1.1862 NaN 1 0 Median 70537000 25783000 44754000 61542000 21920000 39623000 8994500 3863600 5130900 5764 1798;321 5898 15139;15140;15141 23610;23611;23612 23611 3 HLAFGGR RQFGPYRLNYSRTGRHLAFGGRRGHVAALD LNYSRTGRHLAFGGRRGHVAALDWVTKKLM R H L G R R 1 1 0 0 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 756.40311 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 209 215 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.010895 109.88 2 1 0.94048 0.99798 5.6189 3 Median 0.87663 1.0005 7.9437 2 0 Median 1.205 0.99798 NaN 1 0 Median 174990000 86548000 88441000 163790000 81577000 82215000 11197000 4971100 6226000 5765 809 5899 15142;15143;15144 23613;23614;23615 23614 3 HLANVTQLVK QCRETFPQRHMRPNRHLANVTQLVKQLRTE MRPNRHLANVTQLVKQLRTERPSGPGGEMG R H L V K Q 1 0 1 0 0 1 0 0 1 0 2 1 0 0 0 0 1 0 0 2 0 0 10 0 1121.6557 P14373;Q59EC6;A0A0G2JIZ4 P14373 70 79 TRIM27 Zinc finger protein RFP yes no 2 0.011074 52.49 1 1.3192 1.3621 NaN 1 Median 1.3192 1.3621 NaN 1 0 Median NaN NaN NaN 0 0 Median 14645000 8172300 6473200 14645000 8172300 6473200 0 0 0 5766 1480 5900 15145 23616 23616 1 HLAPPPLLSPLLPSIKPTVR APAPPQKPLNSQSQKHLAPPPLLSPLLPSI PLLSPLLPSIKPTVRKTRQDGSQEAPEAPL K H L V R K 1 1 0 0 0 0 0 0 1 1 5 1 0 0 6 2 1 0 0 1 0 0 20 1 2145.3038 Q14676;B4DYH4;H0Y6Z8 Q14676 1060 1079 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 0.0089134 41.257 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5767 1738 5901 15146 23617 23617 1 HLCEPGADGAETFADGVPR KSEKEFKAYVSLFMRHLCEPGADGAETFAD PGADGAETFADGVPREGLSRQHVLTRIGVM R H L P R E 3 1 0 2 1 0 2 3 1 0 1 0 0 1 2 0 1 0 0 1 0 0 19 0 1997.8901 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;Q659F1;Q659D0;Q6ZU36 F5GWX5 1459 1477 CHD4;CHD5;DKFZp434K213;DKFZp434P202 Chromodomain-helicase-DNA-binding protein 4 no no 2;3 4.6976E-23 131.82 5 3 2.139 1.7824 54.015 5 Median 0.67797 0.71613 5.2319 2 0 Median 2.2415 1.9189 6.7217 3 0 Median 81336000 41702000 39634000 63556000 35837000 27719000 17780000 5865300 11915000 5768 515 5902 15147;15148;15149;15150;15151;15152;15153;15154 23618;23619;23620;23621;23622;23623;23624;23625;23626;23627;23628 23622 11 HLCFQLVSPTGTAVSTLSYISR AEVPHIRESVMRQGRHLCFQLVSPTGTAVS SPTGTAVSTLSYISRTNQLAVGFSDGYLAL R H L S R T 1 1 0 0 1 1 0 1 1 1 3 0 0 1 1 4 3 0 1 2 0 0 22 0 2436.2471 Q8WYP5;Q96M44 Q8WYP5 210 231 AHCTF1 Protein ELYS yes no 3 1.486E-07 55.128 2 2.2537 1.852 25.554 2 Median NaN NaN NaN 0 0 Median 2.2537 1.852 25.554 2 0 Median 21444000 5144900 16299000 0 0 0 21444000 5144900 16299000 5769 1945 5903 15155;15156 23629;23630;23631 23631 3 HLCQQLQAEQAAAEK HTSTQALVSELLPAKHLCQQLQAEQAAAEK HLCQQLQAEQAAAEKRHREELEQSKQAAGG K H L E K R 4 0 0 0 1 4 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 15 0 1723.8312 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1365 1379 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 7.1546E-05 84.169 2 1 1.2516 1.1242 22.913 2 Median 0.94101 0.95602 NaN 1 0 Median 1.6648 1.3219 NaN 1 0 Median 23356000 7357400 15998000 19337000 5897300 13440000 4018400 1460000 2558300 5770 186;1747 5904 15157;15158;15159 23632;23633;23634;23635;23636 23634 5 HLDDINFDVR KYITDVVKLNAFDQRHLDDINFDVRFETFQ AFDQRHLDDINFDVRFETFQTITSYIKEMQ R H L V R F 0 1 1 3 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1242.5993 O75691 O75691 1440 1449 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00017917 92.838 2 2 1.4346 1.1997 22.517 3 Median 0.78398 0.82597 NaN 1 0 Median 1.4449 1.2188 2.2323 2 0 Median 39135000 14520000 24615000 32194000 11850000 20345000 6940700 2670100 4270600 5771 1412 5905 15160;15161;15162;15163 23637;23638;23639;23640;23641 23637 5 HLDDLSK TLLPVIQFLQKSIQRHLDDLSKLCSWNHYN FLQKSIQRHLDDLSKLCSWNHYNMQYALAV R H L S K L 0 0 0 2 0 0 0 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 7 0 826.41848 Q15269;A0A0B4J2E5;A0A096LPI6 Q15269 855 861 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.026763 87.754 1 0.85632 0.88768 NaN 1 Median 0.85632 0.88768 NaN 1 0 Median NaN NaN NaN 0 0 Median 12611000 6072400 6538900 12611000 6072400 6538900 0 0 0 5772 1756 5906 15164 23642 23642 1 HLDGEEDGSSDQSQASGTTGGR DTRPKVKAKKARKVKHLDGEEDGSSDQSQA GSSDQSQASGTTGGRRVSKALMASMARRAS K H L G R R 1 1 0 3 0 2 2 5 1 0 1 0 0 0 0 4 2 0 0 0 0 0 22 0 2189.9057 Q5H909;A0A024R9Y7;Q9UNF1;Q5H907 Q5H909 164 185 MAGED2 Melanoma-associated antigen D2 yes no 3 0.019558 18.772 1 1 1.0559 1.0317 77.04 2 Median 1.6501 1.7788 NaN 1 0 Median 0.67566 0.59835 NaN 1 0 Median 4121700 1642900 2478800 2900000 973210 1926800 1221700 669710 551960 5773 292 5907 15165;15166 23643;23644;23645 23643 3 HLDPSLANYLVQK ERELLRRHHRSKTPRHLDPSLANYLVQKAK PRHLDPSLANYLVQKAKQRRALRRWEQELN R H L Q K A 1 0 1 1 0 1 0 0 1 0 3 1 0 0 1 1 0 0 1 1 0 0 13 0 1496.7987 O43463 O43463 109 121 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2;3 4.4929E-29 147.62 2 4 1.0163 1.1323 23.173 5 Median 1.0103 1.1124 2.5063 2 0 Median 1.7357 1.3671 32.615 3 0 Plateau 122350000 56102000 66253000 100320000 50152000 50171000 22032000 5949700 16082000 5774 1385 5908 15167;15168;15169;15170;15171;15172 23646;23647;23648;23649;23650;23651;23652;23653;23654;23655;23656 23656 11 HLDQIIPR LLARMKIDPEAFITRHLDQIIPRMTTQSPL PEAFITRHLDQIIPRMTTQSPLNQSSMNAM R H L P R M 0 1 0 1 0 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 0 8 0 990.56106 E1NZA1;Q92616;B4DM32 E1NZA1 705 712 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0056635 89.752 2 1.8021 1.9009 14.844 2 Median 1.8021 1.9009 14.844 2 0 Median NaN NaN NaN 0 0 Median 46763000 18757000 28006000 46763000 18757000 28006000 0 0 0 5775 1205 5909 15173;15174 23657;23658;23659 23657 3 HLEAILTK TGEETEGMDGQIYKRHLEAILTKISLKNNL DGQIYKRHLEAILTKISLKNNLDHLLASLL R H L T K I 1 0 0 0 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 923.54402 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 378 385 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0077392 81.642 2 2 1.0281 0.94363 9.7593 4 Median 0.81904 0.85579 8.2556 2 0 Median 1.2463 0.99116 1.3868 2 0 Median 55148000 29309000 25840000 48957000 26508000 22449000 6191900 2800900 3391000 5776 897 5910 15175;15176;15177;15178 23660;23661;23662;23663;23664 23662 5 HLEAQGTSLPK AIFLGNKLLKSNRLKHLEAQGTSLPKKLEC NRLKHLEAQGTSLPKKLECIKTSICNHLLR K H L P K K 1 0 0 0 0 1 1 1 1 0 2 1 0 0 1 1 1 0 0 0 0 0 11 0 1179.6248 B4DJ73;B4DHL5;B4E228;Q6NW34;B4E1X5;B4DUV5;B4DVN9 B4DJ73 238 248 C3orf17 Uncharacterized protein C3orf17 yes no 2 0.024829 68.371 2 1.1529 1.1846 19.194 2 Median 1.1529 1.1846 19.194 2 0 Median NaN NaN NaN 0 0 Median 20204000 9404000 10800000 20204000 9404000 10800000 0 0 0 5777 977 5911 15179;15180 23665;23666 23666 1 HLEEQIAK RLLEMVATHVGSVEKHLEEQIAKVDREYEE HVGSVEKHLEEQIAKVDREYEECMSEDLSE K H L A K V 1 0 0 0 0 1 2 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 966.51345 A8K031;O14777 A8K031 599 606 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.026215 61.582 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14544000 0 14544000 14544000 0 14544000 0 0 0 5778 696 5912 15181 23667 23667 1 HLEINPDHPIVETLR ALRDNSTMGYMMAKKHLEINPDHPIVETLR HLEINPDHPIVETLRQKAEADKNDKAVKDL K H L L R Q 0 1 1 1 0 0 2 0 2 2 2 0 0 0 2 0 1 0 0 1 0 0 15 0 1781.9424 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 B4DMA2 587 601 HSP90AB1 Heat shock protein HSP 90-beta yes no 3 8.0826E-11 118.47 3 2 2.0379 1.2618 33.089 3 Plateau 2.0441 2.2234 NaN 1 0 Median 1.4646 1.2536 0.92051 2 0 Median 157380000 39598000 117780000 104880000 16564000 88316000 52498000 23034000 29464000 5779 379 5913 15182;15183;15184;15185;15186 23668;23669;23670;23671;23672 23668 5 HLEINPDHSIIETLR ALRDNSTMGYMAAKKHLEINPDHSIIETLR HLEINPDHSIIETLRQKAEADKNDKSVKDL K H L L R Q 0 1 1 1 0 0 2 0 2 3 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1785.9373 K9JA46;P07900;Q8TBA7;O75322;Q96HX7 K9JA46 633 647 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 0.00017047 55.011 1 2.0773 1.7369 NaN 1 Median NaN NaN NaN 0 0 Median 2.0773 1.7369 NaN 1 0 Median 3681800 958480 2723300 0 0 0 3681800 958480 2723300 5780 1348 5914 15187 23673 23673 1 HLELYDR MKQRDDILINRPAKKHLELYDRDLKHFRIS LINRPAKKHLELYDRDLKHFRISKALDRVL K H L D R D 0 1 0 1 0 0 1 0 1 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 944.47158 Q8TED0;H0Y8P4 Q8TED0 360 366 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.019284 94.262 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5781 1936 5915 15188 23674 23674 1 HLETEEELK ESDQLKENIKEIVAKHLETEEELKVAHCCL KEIVAKHLETEEELKVAHCCLKEQEETINE K H L L K V 0 0 0 0 0 0 4 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1126.5506 A0A087X0P0;Q02224 A0A087X0P0 1472 1480 CENPE Kinesin-like protein;Centromere-associated protein E yes no 2 0.04687 48.036 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3875200 0 3875200 3875200 0 3875200 0 0 0 5782 445 5916 15189 23675 23675 1 HLFGQPNSAYDFK VSKMLKDYDWINAERHLFGQPNSAYDFKTN ERHLFGQPNSAYDFKTNNPKEAGQRLQKLQ R H L F K T 1 0 1 1 0 1 0 1 1 0 1 1 0 2 1 1 0 0 1 0 0 0 13 0 1522.7205 A0A024R158;O95347;B7ZLZ7;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 946 958 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 8.0417E-09 117.09 5 4 1.441 1.2708 18.791 8 Median 0.94922 0.98829 12.401 4 0 Median 1.7571 1.43 7.3548 4 0 Median 202510000 94879000 107630000 139440000 71649000 67787000 63077000 23229000 39847000 5783 69 5917 15190;15191;15192;15193;15194;15195;15196;15197;15198 23676;23677;23678;23679;23680;23681;23682;23683;23684;23685;23686;23687;23688;23689;23690;23691;23692;23693;23694;23695;23696;23697 23693 21 HLFLLLK FPLPSIETKAEQLTKHLFLLLKDYAKLGAA TKAEQLTKHLFLLLKDYAKLGAARGQNFHL K H L L K D 0 0 0 0 0 0 0 0 1 0 4 1 0 1 0 0 0 0 0 0 0 0 7 0 882.56911 O75691 O75691 2158 2164 UTP20 Small subunit processome component 20 homolog yes yes 2 0.013655 86.344 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2087500 0 2087500 0 0 0 2087500 0 2087500 5784 1412 5918 15199;15200;15201;15202;15203 23698;23699;23700;23701;23702 23701 5 HLGLLEK RQREHRERSQPGFRKHLGLLEKKKDYKLRA RSQPGFRKHLGLLEKKKDYKLRADDYRKKQ K H L E K K 0 0 0 0 0 0 1 1 1 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 808.48069 Q9Y3A2 Q9Y3A2 27 33 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.020239 94.262 2 0.87684 0.96064 4.2832 2 Median 0.87684 0.96064 4.2832 2 0 Median NaN NaN NaN 0 0 Median 90949000 47857000 43092000 90949000 47857000 43092000 0 0 0 5785 2132 5919 15204;15205 23703;23704;23705 23704 3 HLIFVLNK SPHIETYLKKEKPWKHLIFVLNKCDLVPTW KKEKPWKHLIFVLNKCDLVPTWATKRWVAV K H L N K C 0 0 1 0 0 0 0 0 1 1 2 1 0 1 0 0 0 0 0 1 0 0 8 0 982.59639 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 249 256 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0010004 118.06 2 2 1.3956 1.1187 11.582 2 Median NaN NaN NaN 0 0 Median 1.3956 1.1187 11.582 2 0 Median 17040000 4053800 12986000 6846100 0 6846100 10194000 4053800 6139700 5786 1721 5920 15206;15207;15208;15209 23706;23707;23708;23709 23708 4 HLILPEK DRWLSCETQLPVSFRHLILPEKYPPPTELL TQLPVSFRHLILPEKYPPPTELLDLQPLPV R H L E K Y 0 0 0 0 0 0 1 0 1 1 2 1 0 0 1 0 0 0 0 0 0 0 7 0 848.51199 O75643;A4FU77 O75643 1288 1294 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.022039 92.467 1 0.83683 0.94097 NaN 1 Median 0.83683 0.94097 NaN 1 0 Median NaN NaN NaN 0 0 Median 72493000 36508000 35985000 72493000 36508000 35985000 0 0 0 5787 1411 5921 15210 23710 23710 1 HLIPAANTGESK ELKLICCDILDVLDKHLIPAANTGESKVFY LDKHLIPAANTGESKVFYYKMKGDYHRYLA K H L S K V 2 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 12 0 1236.6463 V9HW98;P62258;G9K389;G9K388;B7ZA86 V9HW98 107 118 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 2 4.0771E-08 106.62 1 1 1.8519 1.5584 NaN 1 Median NaN NaN NaN 0 0 Median 1.8519 1.5584 NaN 1 0 Median 33330000 570510 32759000 31841000 0 31841000 1488900 570510 918340 5788 1637 5922 15211;15212 23711;23712 23711 2 HLLEAFK TQFPNFETACWYMGKHLLEAFKGSHKSGKQ TACWYMGKHLLEAFKGSHKSGKQLPPHLVQ K H L F K G 1 0 0 0 0 0 1 0 1 0 2 1 0 1 0 0 0 0 0 0 0 0 7 0 856.48069 O75151 O75151 376 382 PHF2 Lysine-specific demethylase PHF2 yes yes 2 0.051937 65.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5789 1400 5923 15213 23713 23713 1 HLLEGQNASVLAYGPTGAGK TQQDIYAGSVQPILRHLLEGQNASVLAYGP QNASVLAYGPTGAGKTHTMLGSPEQPGVIP R H L G K T 3 0 1 0 0 1 1 4 1 0 3 1 0 0 1 1 1 0 1 1 0 0 20 0 1982.0221 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 114 133 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 4.8571E-05 40.354 1 2 1.0997 0.89737 19.261 3 Median 0.75637 0.7748 NaN 1 0 Median 1.2581 1.0092 16.616 2 0 Median 43999000 25202000 18796000 31834000 19979000 11856000 12164000 5223700 6940600 5790 1745 5924 15214;15215;15216 23714;23715;23716 23714 3 HLLGVEDLLQK MDEMKVLVLSQDYGKHLLGVEDLLQKHTLV DYGKHLLGVEDLLQKHTLVEADIGIQAERV K H L Q K H 0 0 0 1 0 1 1 1 1 0 4 1 0 0 0 0 0 0 0 1 0 0 11 0 1263.7187 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1 D6W5C0 473 483 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0037381 66.568 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3926700 0 3926700 0 0 0 3926700 0 3926700 5791 415 5925 15217;15218;15219 23717;23718;23719 23717 3 HLLIGLPSGAILSLPK SAMEATITERGITSRHLLIGLPSGAILSLP LLIGLPSGAILSLPKALLDPRRPEIPTEQS R H L P K A 1 0 0 0 0 0 0 2 1 2 5 1 0 0 2 2 0 0 0 0 0 0 16 0 1628.0025 Q8N766;H7C4E3 Q8N766 860 875 EMC1 ER membrane protein complex subunit 1 yes no 2;3 4.7127E-05 67.326 2 2 0.72591 0.67875 24.774 2 Median 0.7805 0.80871 NaN 1 0 Median 0.67514 0.56968 NaN 1 0 Median 9066700 4703500 4363200 6471400 3656200 2815200 2595300 1047300 1548100 5792 1913 5926 15220;15221;15222;15223 23720;23721;23722;23723;23724 23721 5 HLLLAPSDVAGWGIFIK NVSCKNCSIQRGSKKHLLLAPSDVAGWGIF LLAPSDVAGWGIFIKDPVQKNEFISEYCGE K H L I K D 2 0 0 1 0 0 0 2 1 2 3 1 0 1 1 1 0 1 0 1 0 0 17 0 1836.0298 A0A090N8E9;Q15910;F2YMM1;S4S3R8;Q75MP9;Q75MQ0 A0A090N8E9 618 634 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 0.017365 21.841 1 0.96388 0.94474 NaN 1 Median 0.96388 0.94474 NaN 1 0 Median NaN NaN NaN 0 0 Median 20970000 10160000 10811000 20970000 10160000 10811000 0 0 0 5793 456 5927 15224 23725 23725 1 HLLPTSGAAATAAAAAAAAAAVTAASTSYYGR MASHLTSTSLDPYDRHLLPTSGAAATAAAA AAAAVTAASTSYYGRDRSPLRRATAPVPTV R H L G R D 15 1 0 0 0 0 0 2 1 0 2 0 0 0 1 3 4 0 2 1 0 0 32 0 2904.473 A8K9U0;Q9BWF3;E9PB51 A8K9U0 275 306 RBM4 RNA-binding protein 4 yes no 3 4.6256E-44 115.76 1 1.504 1.699 NaN 1 Median 1.504 1.699 NaN 1 0 Median NaN NaN NaN 0 0 Median 47277000 16232000 31045000 47277000 16232000 31045000 0 0 0 5794 788 5928 15225 23726 23726 1 HLLPVETQR WVYLEGIFTGSADIKHLLPVETQRFQSIST GSADIKHLLPVETQRFQSISTEFLALMKKV K H L Q R F 0 1 0 0 0 1 1 0 1 0 2 0 0 0 1 0 1 0 0 1 0 0 9 0 1091.6087 Q14204 Q14204 1559 1567 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.016543 53.775 1 2.0772 2.2173 NaN 1 Median 2.0772 2.2173 NaN 1 0 Median NaN NaN NaN 0 0 Median 24700000 7523600 17176000 24700000 7523600 17176000 0 0 0 5795 1729 5929 15226 23727 23727 1 HLLQGWLR GLNDRSDAVKQAMQKHLLQGWLRFSEGNIL VKQAMQKHLLQGWLRFSEGNILELLHRLDV K H L L R F 0 1 0 0 0 1 0 1 1 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 1021.5821 Q9BPX3;Q6NUR1 Q9BPX3 268 275 NCAPG Condensin complex subunit 3 yes no 2 0.027969 53.554 3 2 1.1763 1.1925 16.759 5 Median 1.0531 1.1339 12.983 3 0 Plateau 1.615 1.341 0.36455 2 0 Median 94089000 44428000 49661000 75452000 36797000 38654000 18637000 7631100 11006000 5796 1995 5930 15227;15228;15229;15230;15231 23728;23729;23730;23731;23732;23733;23734 23730 7 HLLSAGDGEVK QAHDGPVYSMVSTDRHLLSAGDGEVKAWLW STDRHLLSAGDGEVKAWLWAEMLKKGCKEL R H L V K A 1 0 0 1 0 0 1 2 1 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1124.5826 Q86W42 Q86W42 88 98 THOC6 THO complex subunit 6 homolog yes yes 2 0.00041899 79.986 1 1.0576 1.0767 NaN 1 Median 1.0576 1.0767 NaN 1 0 Median NaN NaN NaN 0 0 Median 12392000 5105300 7286700 12392000 5105300 7286700 0 0 0 5797 1886 5931 15232 23735;23736 23736 2 HLLSQPLFTESQK RRRQKQMKVLKKELRHLLSQPLFTESQKTK LRHLLSQPLFTESQKTKYPTQSGKPPLLVS R H L Q K T 0 0 0 0 0 2 1 0 1 0 3 1 0 1 1 2 1 0 0 0 0 0 13 0 1526.8093 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;A0A087WXU8;Q7Z4X3;Q7Z4W0 B4DKV2 701 713 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.00013877 81.625 2 2 0.92702 0.8524 9.0233 3 Median 0.85085 0.8524 NaN 1 0 Median 1.0004 0.79083 11.196 2 0 Median 29929000 11881000 18048000 21758000 7819900 13938000 8170900 4061600 4109300 5798 993 5932 15233;15234;15235;15236 23737;23738;23739;23740;23741;23742 23738 6 HLLVSNVGGDGEEIER GSLMFHKLRPVDQLRHLLVSNVGGDGEEIE LLVSNVGGDGEEIERFFKLHQEDQACATCL R H L E R F 0 1 1 1 0 0 3 3 1 1 2 0 0 0 0 1 0 0 0 2 0 0 16 0 1722.8537 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 484 499 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.00096285 27.715 1 1.4167 1.4715 NaN 1 Median 1.4167 1.4715 NaN 1 0 Median NaN NaN NaN 0 0 Median 20820000 7791900 13028000 20820000 7791900 13028000 0 0 0 5799 39 5933 15237 23743 23743 1 HLMLPDFDLLEDIESK PLSGGDQYQNITVHRHLMLPDFDLLEDIES LMLPDFDLLEDIESKIQPGSQQADFLDALI R H L S K I 0 0 0 3 0 0 2 0 1 1 4 1 1 1 1 1 0 0 0 0 0 0 16 0 1913.9445 P13010;Q53TC2;C9JZ81 P13010 82 97 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 8.4174E-18 129.76 6 2 0.45333 0.46266 40.728 7 Median 0.46943 0.52835 9.4706 5 0 Median 0.27235 0.22159 3.2834 2 0 Median 272240000 198590000 73643000 207780000 148700000 59081000 64458000 49896000 14562000 5800 1476 5934 15238;15239;15240;15241;15242;15243;15244;15245 23744;23745;23746;23747;23748;23749;23750;23751;23752;23753 23749 1220 10 HLMLSSVLSK CEAREELFQNRADVRHLMLSSVLSKEMAAY RADVRHLMLSSVLSKEMAAYKQPNLAHLSV R H L S K E 0 0 0 0 0 0 0 0 1 0 3 1 1 0 0 3 0 0 0 1 0 0 10 0 1113.6216 A0A0A0YP96;A0A0A0YLX2 A0A0A0YP96 884 893 U38 DNA polymerase yes no 2 0.034858 41.448 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5801 490 5935 15246 23754 23754 337 1 HLMQDLR RILIFSSRGINFRTRHLMQDLRMLMPHSKA RGINFRTRHLMQDLRMLMPHSKADTKMDRK R H L L R M 0 1 0 1 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 7 0 911.46472 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 76 82 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.041494 58.981 1 0.60877 0.51677 NaN 1 Median NaN NaN NaN 0 0 Median 0.60877 0.51677 NaN 1 0 Median 5178200 3061400 2116800 0 0 0 5178200 3061400 2116800 5802 1934 5936 15247 23755 23755 1 HLNDDVVK DAHTKEIDLVNRDPKHLNDDVVKIDFEDVI LVNRDPKHLNDDVVKIDFEDVIAEPEGTHS K H L V K I 0 0 1 2 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 938.48214 C9JKI3;Q7Z4F3;A0A024R757;E9PCT5;A9XTE5;Q2TNI1;Q59E85;Q03135 C9JKI3 27 34 CAV1 Caveolin;Caveolin-1 yes no 2 0.00037076 133.23 1 1.125 1.2174 NaN 1 Median 1.125 1.2174 NaN 1 0 Median NaN NaN NaN 0 0 Median 38673000 18037000 20635000 38673000 18037000 20635000 0 0 0 5803 215 5937 15248 23756 23756 1 HLNPDTELK APLSSRKHVLYVEHRHLNPDTELKRYFGAR LYVEHRHLNPDTELKRYFGARAILGEQRPR R H L L K R 0 0 1 1 0 0 1 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 9 0 1065.5455 Q9BQ70;Q9H7D3;H3BSP8;H3BTU3;H3BQ53;H3BSS3 Q9BQ70 184 192 TCF25 Transcription factor 25 yes no 2 0.0021437 76.221 1 1.093 1.1099 NaN 1 Median 1.093 1.1099 NaN 1 0 Median NaN NaN NaN 0 0 Median 6501700 2439900 4061800 6501700 2439900 4061800 0 0 0 5804 1996 5938 15249 23757 23757 1 HLPDNECIEK EQKVNPREIAENITKHLPDNECIEKVEIAG ENITKHLPDNECIEKVEIAGPGFINVHLRK K H L E K V 0 0 1 1 1 0 2 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 10 0 1253.571 P54136 P54136 144 153 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0025951 68.371 2 1 1.7405 1.7951 45.06 3 Plateau 1.7374 1.7907 4.7809 2 0 Median 0.98397 0.82227 NaN 1 0 Median 34899000 12632000 22267000 32677000 11566000 21111000 2222500 1066500 1155900 5805 1609 5939 15250;15251;15252 23758;23759;23760;23761;23762 23760 5 HLPEPVAIK PEELIQKWNTKKTKKHLPEPVAIKFLASDL TKKTKKHLPEPVAIKFLASDLDQKMKSISL K H L I K F 1 0 0 0 0 0 1 0 1 1 1 1 0 0 2 0 0 0 0 1 0 0 9 0 1002.5862 O75691;B4DN27 O75691 2511 2519 UTP20 Small subunit processome component 20 homolog yes no 2 0.0020972 76.827 2 1 1.5715 1.5108 12.248 3 Median 1.4573 1.626 10.391 2 0 Median 1.7618 1.3722 NaN 1 0 Median 171010000 77262000 93744000 167270000 75613000 91660000 3733600 1649200 2084400 5806 1412 5940 15253;15254;15255 23763;23764;23765;23766;23767 23763 5 HLPGVCK SSMTRAIETTDIISRHLPGVCKVSTDLLRE ETTDIISRHLPGVCKVSTDLLREGAPIEPD R H L C K V 0 0 0 0 1 0 0 1 1 0 1 1 0 0 1 0 0 0 0 1 0 0 7 0 809.42179 Q96HS1;F5GXG4 Q96HS1 163 169 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.04783 66.994 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5807 1972 5941 15256 23768 23768 1 HLPPAALHLIAYYK RNSGGTPRTSSKPHKHLPPAALHLIAYYKE KHLPPAALHLIAYYKENKDREDKRSALSCV K H L Y K E 3 0 0 0 0 0 0 0 2 1 3 1 0 0 2 0 0 0 2 0 0 0 14 0 1605.9031 Q9UIG0 Q9UIG0 470 483 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.00074324 65.563 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11605000 0 11605000 5619100 0 5619100 5985800 0 5985800 5808 2103 5942 15257;15258;15259 23769;23770;23771;23772 23772 4 HLPPQLR GGVNQYVVQEVLSIKHLPPQLRAFQAAFRA VQEVLSIKHLPPQLRAFQAAFRAQGPLAML K H L L R A 0 1 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 0 0 0 0 0 7 0 859.50282 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00;A0PJ76;F5GZK7;F5H431 B3KMS0 36 42 NCAPD2 Condensin complex subunit 1 yes no 2 0.042191 58.661 1 0.91445 0.93543 NaN 1 Median 0.91445 0.93543 NaN 1 0 Median NaN NaN NaN 0 0 Median 34841000 17600000 17241000 34841000 17600000 17241000 0 0 0 5809 908 5943 15260 23773 23773 1 HLPSTEPDPHVVR RVCFEMKINEEISVKHLPSTEPDPHVVRIG VKHLPSTEPDPHVVRIGWSLDSCSTQLGEE K H L V R I 0 1 0 1 0 0 1 0 2 0 1 0 0 0 3 1 1 0 0 2 0 0 13 0 1482.7579 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0;M0QYZ0;M0QYM5;M0QYI8 M0R3F1 120 132 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 0.00011349 51.211 1 1.0653 1.0559 NaN 1 Median 1.0653 1.0559 NaN 1 0 Median NaN NaN NaN 0 0 Median 15717000 8393800 7323500 15717000 8393800 7323500 0 0 0 5810 49 5944 15261 23774;23775;23776 23776 3 HLPTLDHPIIPADYVAIK DVATKVMIGENVDEKHLPTLDHPIIPADYV TLDHPIIPADYVAIKAPMFSWPRLRDADPI K H L I K A 2 0 0 2 0 0 0 0 2 3 2 1 0 0 3 0 1 0 1 1 0 0 18 0 2012.1095 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327 Q5R210 1292 1309 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 3 0.036824 16.494 1 0.9363 0.79762 NaN 1 Median NaN NaN NaN 0 0 Median 0.9363 0.79762 NaN 1 0 Median 1153100 579680 573420 0 0 0 1153100 579680 573420 5811 148 5945 15262 23777 23777 1 HLPVEEQLK DAAEEERLVLLENQKHLPVEEQLKLLLERL LLENQKHLPVEEQLKLLLERLDEVNASKQS K H L L K L 0 0 0 0 0 1 2 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1091.5975 P55201 P55201 779 787 BRPF1 Peregrin yes yes 2 0.017855 52.591 1 0.68655 0.71375 NaN 1 Median 0.68655 0.71375 NaN 1 0 Median NaN NaN NaN 0 0 Median 33700000 20866000 12834000 33700000 20866000 12834000 0 0 0 5812 1616 5946 15263 23778 23778 1 HLQDLMEGLTAK EDDLFDRLNTGILNKHLQDLMEGLTAKVFR LNKHLQDLMEGLTAKVFRTYNASITLQQQL K H L A K V 1 0 0 1 0 1 1 1 1 0 3 1 1 0 0 0 1 0 0 0 0 0 12 0 1354.6915 P11387;B9EG90 P11387 576 587 TOP1 DNA topoisomerase 1 yes no 2 4.6092E-18 140.45 4 7 1.6533 1.3055 48.802 10 Median 1.9131 2.1842 3.711 4 0 Median 0.98097 0.80256 27.075 6 0 Median 733440000 255300000 478140000 675780000 229170000 446610000 57664000 26129000 31536000 5813 1470 5947;5948 15264;15265;15266;15267;15268;15269;15270;15271;15272;15273;15274 23779;23780;23781;23782;23783;23784;23785;23786;23787;23788;23789;23790;23791;23792;23793;23794;23795;23796;23797 23781 1186 19 HLQLAIR GNAARDNKKTRIIPRHLQLAIRNDEELNKL KKTRIIPRHLQLAIRNDEELNKLLGKVTIA R H L I R N 1 1 0 0 0 1 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 849.51847 A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3;Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908;B2R5B6;Q71UI9;P0C0S5;C9J0D1;C9J386;Q96QV6;P16104 Q71UI9 83 89 HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;HIST1H2AC;HIST3H2A;H2AFV;H2AFZ;HIST1H2AA;H2AFX Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.V;Histone H2A.Z;Histone H2A type 1-A;Histone H2AX no no 2 1.7972E-27 177.57 91 6 0.70462 0.8523 33.222 30 Plateau 0.6978 0.89485 35.383 26 0 Plateau 0.80754 0.7063 2.572 4 0 Median 47672000000 38325000000 9347200000 45975000000 37394000000 8580400000 1697200000 930460000 766740000 5814 312;832;1462;1487 5949 15275;15276;15277;15278;15279;15280;15281;15282;15283;15284;15285;15286;15287;15288;15289;15290;15291;15292;15293;15294;15295;15296;15297;15298;15299;15300;15301;15302;15303;15304;15305;15306;15307;15308;15309;15310;15311;15312;15313;15314;15315;15316;15317;15318;15319;15320;15321;15322;15323;15324;15325;15326;15327;15328;15329;15330;15331;15332;15333;15334;15335;15336;15337;15338;15339;15340;15341;15342;15343;15344;15345;15346;15347;15348;15349;15350;15351;15352;15353;15354;15355;15356;15357;15358;15359;15360;15361;15362;15363;15364;15365;15366;15367;15368;15369;15370;15371 23798;23799;23800;23801;23802;23803;23804;23805;23806;23807;23808;23809;23810;23811;23812;23813;23814;23815;23816;23817;23818;23819;23820;23821;23822;23823;23824;23825;23826;23827;23828;23829;23830;23831;23832;23833;23834;23835;23836;23837;23838;23839;23840;23841;23842;23843;23844;23845;23846;23847;23848;23849;23850;23851;23852;23853;23854;23855;23856;23857;23858;23859;23860;23861;23862;23863;23864;23865;23866;23867;23868;23869;23870;23871;23872;23873;23874;23875;23876;23877;23878;23879;23880;23881;23882;23883;23884;23885;23886;23887;23888;23889;23890;23891;23892;23893;23894;23895;23896;23897;23898;23899;23900;23901;23902;23903;23904;23905;23906;23907;23908;23909;23910;23911;23912;23913;23914;23915;23916;23917;23918;23919;23920;23921;23922;23923;23924;23925;23926;23927;23928;23929;23930;23931;23932;23933;23934;23935;23936;23937;23938;23939;23940;23941;23942;23943;23944;23945;23946;23947;23948;23949;23950 23835 153 HLQLAIRGDEELDSLIK GNASKDLKVKRITPRHLQLAIRGDEELDSL QLAIRGDEELDSLIKATIAGGGVIPHIHKS R H L I K A 1 1 0 2 0 1 2 1 1 2 4 1 0 0 0 1 0 0 0 0 0 0 17 1 1949.0582 Q71UI9;P0C0S5;C9J0D1;C9J386 Q71UI9 86 102 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z;Histone H2A yes no 3 4.7542E-05 59.728 3 0.93083 0.79778 6.4749 3 Median NaN NaN NaN 0 0 Median 0.93083 0.79778 6.4749 3 0 Median 302770000 158750000 144020000 0 0 0 302770000 158750000 144020000 5815 1462 5950 15372;15373;15374 23951;23952;23953 23953 3 HLQLAIRNDEELNK GNAARDNKKTRIIPRHLQLAIRNDEELNKL RHLQLAIRNDEELNKLLGKVTIAQGGVLPN R H L N K L 1 1 2 1 0 1 2 0 1 1 3 1 0 0 0 0 0 0 0 0 0 0 14 1 1691.8955 A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3;Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908;B2R5B6;Q96QV6;P16104 A3KPC7 83 96 HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;HIST1H2AC;HIST3H2A;HIST1H2AA;H2AFX Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2AX no no 3 0.0031901 32.275 2 0.9514 0.79691 8.081 2 Median NaN NaN NaN 0 0 Median 0.9514 0.79691 8.081 2 0 Median 9827900 4802900 5025000 0 0 0 9827900 4802900 5025000 5816 312;832;1487 5951 15375;15376 23954;23955;23956 23955 3 HLQLAVR GNAARDNKKTRIIPRHLQLAVRNDEELNKL KKTRIIPRHLQLAVRNDEELNKLLGGVTIA R H L V R N 1 1 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 835.50282 Q8IUE6;A2RUA4 Q8IUE6 83 89 HIST2H2AB Histone H2A type 2-B;Histone H2A yes no 2 4.148E-07 160.17 4 1 0.86744 1.0801 22.595 3 Plateau 0.86744 1.0244 7.4882 2 0 Median 0.81406 0.70025 NaN 1 0 Median 2985600000 1771700000 1213900000 2936400000 1744900000 1191500000 49229000 26764000 22465000 5817 1890 5952 15377;15378;15379;15380;15381 23957;23958;23959;23960;23961;23962;23963;23964;23965;23966 23963 10 HLQTGENHTSVDPR RYEKLTPVPDSFFAKHLQTGENHTSVDPRQ KHLQTGENHTSVDPRQTQFGGLNTPYPGGL K H L P R Q 0 1 1 1 0 1 1 1 2 0 1 0 0 0 1 1 2 0 0 1 0 0 14 0 1589.7546 O94906 O94906 190 203 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 2.9479E-05 78.486 1 1 0.75086 0.71604 12.93 2 Median 0.78819 0.78459 NaN 1 0 Median 0.71529 0.65348 NaN 1 0 Median 8607500 4991200 3616300 7953600 4600400 3353200 653870 390780 263080 5818 1418 5953 15382;15383 23967;23968;23969 23968 3 HLTDAYFK ATSTKIDISNVKIPKHLTDAYFKKKKLRKP SNVKIPKHLTDAYFKKKKLRKPRHQEGEIF K H L F K K 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 993.49198 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B4DRX3 Q8TBK5 211 218 RPL6 60S ribosomal protein L6 yes no 2 9.4278E-09 153.73 2 2 0.88012 0.87569 31.099 4 Median 0.97485 1.1531 3.2844 2 0 Median 0.80211 0.67371 1.444 2 0 Median 1312600000 685880000 626690000 1209600000 629480000 580150000 102940000 56401000 46541000 5819 342 5954 15384;15385;15386;15387 23970;23971;23972;23973;23974;23975;23976;23977;23978;23979 23973 10 HLTGEFEK LVGDGGTGKTTFVKRHLTGEFEKKYVATLG KTTFVKRHLTGEFEKKYVATLGVEVHPLVF R H L E K K 0 0 0 0 0 0 2 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 8 0 959.47125 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 30 37 RAN GTP-binding nuclear protein Ran yes no 2 6.0143E-21 164.53 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31487000 28335000 3151700 28335000 28335000 0 3151700 0 3151700 5820 1082 5955 15388;15389;15390;15391 23980;23981;23982;23983 23980 4 HLTVPK GEEEIKTYRSEEKRKHLTVPKENKIPTVSK TYRSEEKRKHLTVPKENKIPTVSKNHAHEH K H L P K E 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 1 0 0 6 0 693.41736 Q8WWQ0 Q8WWQ0 759 764 PHIP PH-interacting protein yes yes 2 0.060674 91.584 1 1.3705 1.1013 NaN 1 Median NaN NaN NaN 0 0 Median 1.3705 1.1013 NaN 1 0 Median 16503000 7214100 9288700 0 0 0 16503000 7214100 9288700 5821 1942 5956 15392 23984 23984 1 HLTYNDFINK LHGLPEQFLYGTATKHLTYNDFINKELILF GTATKHLTYNDFINKELILFSNSDNERSIP K H L N K E 0 0 2 1 0 0 0 0 1 1 1 1 0 1 0 0 1 0 1 0 0 0 10 0 1263.6248 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 685 694 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 3.319E-08 125.7 1 2 1.0612 0.84903 7.5083 2 Median NaN NaN NaN 0 0 Median 1.0612 0.84903 7.5083 2 0 Median 37735000 24378000 13357000 12442000 12442000 0 25293000 11936000 13357000 5822 1679 5957 15393;15394;15395 23985;23986;23987;23988 23985 4 HLVDEPQNLIK DDPHACYSTVFDKLKHLVDEPQNLIKQNCD DKLKHLVDEPQNLIKQNCDQFEKLGEYGFQ K H L I K Q 0 0 1 1 0 1 1 0 1 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1304.7089 CON__P02769 CON__P02769 402 412 yes yes 2 7.8232E-17 142 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19292000 19292000 0 19292000 19292000 0 0 0 0 + 5823 1153 5958 15396;15397 23989;23990 23989 2 HLVLAGGSK KKLVENGGMFVCKTRHLVLAGGSKPRDVTN FVCKTRHLVLAGGSKPRDVTNFTVGGFAPM R H L S K P 1 0 0 0 0 0 0 2 1 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 880.51305 B4E0Q4;B4DZJ7;O00267;B4DJK4 B4E0Q4 501 509 SUPT5H Transcription elongation factor SPT5 yes no 2 4.9492E-05 104.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9064800 0 9064800 9064800 0 9064800 0 0 0 5824 1056 5959 15398 23991 23991 1 HLVMGDIPAAVNAFQEAASLLGK DVDSEAKKLLGLGQKHLVMGDIPAAVNAFQ AAVNAFQEAASLLGKKYGETANECGEAFFF K H L G K K 5 0 1 1 0 1 1 2 1 1 3 1 1 1 1 1 0 0 0 2 0 0 23 0 2351.2308 Q53H03;P49321;E9PI86;O95138;Q5T626;Q6PJY7;E9PPQ8 Q53H03 53 75 NASP Nuclear autoantigenic sperm protein yes no 3 5.4536E-09 61.963 1 6.0689 6.1573 NaN 1 Median 6.0689 6.1573 NaN 1 0 Median NaN NaN NaN 0 0 Median 13405000 2356300 11048000 13405000 2356300 11048000 0 0 0 5825 1579 5960 15399 23992 23992 1356 1 HLVVPGDTITTDTGFMR ARKPLSERLGRDTKKHLVVPGDTITTDTGF VVPGDTITTDTGFMRGHGTYMGEEKLIASV K H L M R G 0 1 0 2 0 0 0 2 1 1 1 0 1 1 1 0 4 0 0 2 0 0 17 0 1858.9247 Q13868;A3KFL5;A3KFL2;B4E001;A3KFL1 Q13868 25 41 EXOSC2 Exosome complex component RRP4 yes no 3 3.2056E-05 57.288 1 1.0848 1.1128 NaN 1 Median 1.0848 1.1128 NaN 1 0 Median NaN NaN NaN 0 0 Median 14371000 5217900 9152700 14371000 5217900 9152700 0 0 0 5826 1722 5961 15400 23993 23993 1556 1 HLYTLDGGDIINALCFSPNR GKDGQAMLWDLNEGKHLYTLDGGDIINALC DGGDIINALCFSPNRYWLCAATGPSIKIWD K H L N R Y 1 1 2 2 1 0 0 2 1 2 3 0 0 1 1 1 1 0 1 0 0 0 20 0 2275.1056 E9KL35;P63244;J3KPE3;D6RAC2;H0Y8W2;H0YAF8;D6R9Z1;H0YAM7;D6R9L0;D6REE5;H0Y8R5;D6RF23 E9KL35 226 245 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3 8.1374E-32 146.67 2 2 1.6376 1.4411 19.537 4 Linear 1.6156 1.7422 10.243 2 0 Median 1.5137 1.2628 2.0945 2 0 Median 99483000 38519000 60964000 81224000 31402000 49822000 18258000 7116300 11142000 5827 1227 5962 15401;15402;15403;15404 23994;23995;23996;23997;23998;23999;24000;24001 24000 8 HMDITEDLTNK ELCKILEEMREEIHRHMDITEDLTNKARGS EIHRHMDITEDLTNKARGSNKSFLAAANEE R H M N K A 0 0 1 2 0 0 1 0 1 1 1 1 1 0 0 0 2 0 0 0 0 0 11 0 1315.6078 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 391 401 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 1.769E-08 119.6 2 0.89377 0.92142 13.332 2 Median 0.89377 0.92142 13.332 2 0 Median NaN NaN NaN 0 0 Median 24511000 10638000 13872000 24511000 10638000 13872000 0 0 0 5828 1224 5963 15405;15406 24002;24003 24003 933 2 HMDQPLPTAIGLYK FMDREKKEDLEFQAKHMDQPLPTAIGLYKN KHMDQPLPTAIGLYKNHPLYALKRHLLKYE K H M Y K N 1 0 0 1 0 1 0 1 1 1 2 1 1 0 2 0 1 0 1 0 0 0 14 0 1582.8177 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPK7;D2CPK0;D2CPJ1;D2CPJ3;D2CPI8 A0A024R2M8 629 642 XPC DNA repair protein complementing XP-C cells no no 2 0.003671 40.154 1 0.81884 0.833 NaN 1 Median 0.81884 0.833 NaN 1 0 Median NaN NaN NaN 0 0 Median 13308000 6492900 6814800 13308000 6492900 6814800 0 0 0 5829 118;1184 5964 15407 24004 24004 100 1 HMLPSGFR ILMPNIGYGSNKKTKHMLPSGFRKFLVHNV GSNKKTKHMLPSGFRKFLVHNVKELEVLLM K H M F R K 0 1 0 0 0 0 0 1 1 0 1 0 1 1 1 1 0 0 0 0 0 0 8 0 943.46981 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 68 75 RPL32 60S ribosomal protein L32 yes no 2 0.0016284 97.033 2 2 1.219 1.416 33.434 3 Plateau 1.2081 1.4093 0.66702 2 0 Median 0.93809 0.78984 NaN 1 0 Median 576200000 258910000 317290000 569660000 256490000 313170000 6535700 2420600 4115100 5830 112 5965;5966 15408;15409;15410;15411 24005;24006;24007;24008;24009;24010 24007 98 6 HMLSPR H M P R 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 6 0 739.37993 REV__H0YIE9 yes no 2 0.031146 85.909 1 0.61043 0.66821 NaN 1 Median 0.61043 0.66821 NaN 1 0 Median NaN NaN NaN 0 0 Median 52837000 33252000 19585000 52837000 33252000 19585000 0 0 0 + 5831 2160 5967 15412 24011 24011 2005 1 HMSADDLNDGFVLDK RMLGKDEDENVKKPKHMSADDLNDGFVLDK HMSADDLNDGFVLDKDDRRLLSYKDGKMNV K H M D K D 1 0 1 4 0 0 0 1 1 0 2 1 1 1 0 1 0 0 0 1 0 0 15 0 1675.7512 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 311 325 NOP14 Nucleolar protein 14 yes no 2 2.5045E-07 96.059 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9757500 0 9757500 9757500 0 9757500 0 0 0 5832 790 5968 15413;15414 24012;24013 24012 631 2 HNDIVDSDSDAEDR EELTHYGQSLADIEKHNDIVDSDSDAEDRG KHNDIVDSDSDAEDRGTLSAELTAAHFGGG K H N D R G 1 1 1 5 0 0 1 0 1 1 0 0 0 0 0 2 0 0 0 1 0 0 14 0 1586.6445 A8KA74;P78316;E9PFK5 A8KA74 140 153 NOP14 Nucleolar protein 14 yes no 2 0.0024419 63.091 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5833 790 5969 15415 24014 24014 1 HNGASEPTQPIK H N I K 1 0 1 0 0 1 1 1 1 1 0 1 0 0 2 1 1 0 0 0 0 0 12 0 1277.6364 REV__Q86TI1 yes no 2 0.0037023 55.37 2 1.0821 1.1671 1.2614 2 Median 1.0821 1.1671 1.2614 2 0 Median NaN NaN NaN 0 0 Median 145280000 69869000 75408000 145280000 69869000 75408000 0 0 0 + 5834 2161 5970 15416;15417 24015;24016 24016 2 HNLEIIK FLMKHVFHPKRAVFRHNLEIIKTLVECWKD HPKRAVFRHNLEIIKTLVECWKDCLSIPYR R H N I K T 0 0 1 0 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 0 0 0 7 0 865.50215 P78527 P78527 2233 2239 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00054684 142.64 2 0.65891 0.74075 1.2811 2 Median 0.65891 0.74075 1.2811 2 0 Median NaN NaN NaN 0 0 Median 193360000 111980000 81382000 193360000 111980000 81382000 0 0 0 5835 1665 5971 15418;15419 24017;24018;24019 24018 3 HNTAVSQLTK KMDVAQSELDIYLSRHNTAVSQLTKAKEAL IYLSRHNTAVSQLTKAKEALIAASETLKER R H N T K A 1 0 1 0 0 1 0 0 1 0 1 1 0 0 0 1 2 0 0 1 0 0 10 0 1097.5829 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 513 522 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 5.8001E-112 259.33 2 2 0.78639 0.92945 80.529 4 Median 0.78639 0.92945 2.588 2 0 Median 0.67624 0.58355 131.46 2 0 Median 1250500000 666740000 583720000 985070000 548500000 436580000 265390000 118240000 147140000 5836 2070 5972 15420;15421;15422;15423 24020;24021;24022;24023;24024;24025;24026;24027;24028 24023 9 HNYLSQVK NLKCPLLLQQFSNDKHNYLSQVKKGKAITP QQFSNDKHNYLSQVKKGKAITPKDNNKTLK K H N V K K 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 1 1 0 0 8 0 987.51378 Q9H5I1;C9IYH9;C9JMB4 Q9H5I1 98 105 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 yes no 2 0.0010288 114.28 2 1.8911 1.4751 10.808 2 Median NaN NaN NaN 0 0 Median 1.8911 1.4751 10.808 2 0 Median 6905400 2535000 4370400 0 0 0 6905400 2535000 4370400 5837 2036 5973 15424;15425 24029;24030 24029 2 HPAKPDPSGECNPDLR TKTPSSDVLVFDYTKHPAKPDPSGECNPDL PAKPDPSGECNPDLRLRGHQKEGYGLSWNS K H P L R L 1 1 1 2 1 0 1 1 1 0 1 1 0 0 4 1 0 0 0 0 0 0 16 1 1788.8213 Q6FHQ0;Q16576;E9PC52;Q5JP01 Q6FHQ0 156 171 RBBP7 Histone-binding protein RBBP7 yes no 2;3 2.69E-12 124.46 4 2 1.1181 1.2341 24.089 6 Median 0.86653 1.0106 25.026 4 0 Median 1.6845 1.4205 0.88869 2 0 Median 125760000 63960000 61801000 111090000 58269000 52823000 14668000 5690200 8978300 5838 1771 5974 15426;15427;15428;15429;15430;15431 24031;24032;24033;24034;24035;24036;24037;24038;24039 24032 9 HPDADSLYVEK SRLDIRVGKIITVEKHPDADSLYVEKIDVG TVEKHPDADSLYVEKIDVGEAEPRTVVSGL K H P E K I 1 0 0 2 0 0 1 0 1 0 1 1 0 0 1 1 0 0 1 1 0 0 11 0 1272.5986 A0A0S2Z4R1;P54577 A0A0S2Z4R1 381 391 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes no 2 7.4096E-10 126.31 2 4.3962 4.5321 NaN 1 Median 4.3962 4.5321 NaN 1 0 Median NaN NaN NaN 0 0 Median 17336000 5945400 11390000 17336000 5945400 11390000 0 0 0 5839 567 5975 15432;15433 24040;24041 24040 2 HPDFPK QEHVKNPYKGKKLKKHPDFPKKPLTPYFRF PYKGKKLKKHPDFPKKPLTPYFRFFMEKRA K H P P K K 0 0 0 1 0 0 0 0 1 0 0 1 0 1 2 0 0 0 0 0 0 0 6 0 739.36532 E9PKP7;P17480;A8K962;B4DNQ1;Q05BZ1;Q9BQR2;E9PMM2 E9PKP7 108 113 UBTF Nucleolar transcription factor 1 yes no 2 0.0025726 118.06 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15772000 0 15772000 15772000 0 15772000 0 0 0 5840 1244 5976 15434 24042 24042 1 HPDGVASVSFR CSKFGQIRKLLLFDRHPDGVASVSFRDPEE LFDRHPDGVASVSFRDPEEADYCIQTLDGR R H P F R D 1 1 0 1 0 0 0 1 1 0 0 0 0 1 1 2 0 0 0 2 0 0 11 0 1170.5782 O43719;B4DRS4 O43719 310 320 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.043606 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8745600 0 8745600 8745600 0 8745600 0 0 0 5841 1388 5977 15435 24043 24043 1 HPDSSVNFAEFSK YAFFVQTCREEHKKKHPDSSVNFAEFSKKC KKHPDSSVNFAEFSKKCSERWKTMSAKEKS K H P S K K 1 0 1 1 0 0 1 0 1 0 0 1 0 2 1 3 0 0 0 1 0 0 13 0 1463.6681 Q5U071;P26583;D6R9A6 Q5U071 31 43 HMGB2 High mobility group protein B2 yes no 2 1.65E-05 96.604 2 2 0.32509 0.32294 112.02 3 Plateau 0.32509 0.32294 106.48 2 0 Median 0.096843 0.076773 NaN 1 0 Median 58143000 45920000 12223000 50332000 38680000 11652000 7811200 7240400 570830 5842 1521 5978 15436;15437;15438;15439 24044;24045;24046;24047;24048;24049 24049 6 HPDVEVDGFSELR WYHFSCFWKVGHSIRHPDVEVDGFSELRWD IRHPDVEVDGFSELRWDDQQKVKKTAEAGG R H P L R W 0 1 0 2 0 0 2 1 1 0 1 0 0 1 1 1 0 0 0 2 0 0 13 0 1498.7052 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q5VX84;Q5VX85 A0A024R3T8 66 78 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.8605E-05 99.343 2 2 0.78581 0.7774 19.315 4 Median 0.57804 0.66017 0.56213 2 0 Median 1.0672 0.92206 1.5777 2 0 Median 355760000 217870000 137890000 278480000 179120000 99357000 77282000 38754000 38528000 5843 139 5979 15440;15441;15442;15443 24050;24051;24052;24053;24054;24055;24056;24057;24058;24059;24060 24055 11 HPDYAILAAR LDTLAAETAATLTTKHPDYAILAARIAVSN TLTTKHPDYAILAARIAVSNLHKETKKVFS K H P A R I 3 1 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 10 0 1125.5931 B4DNN4;Q53GZ5;P23921 B4DNN4 41 50 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.022498 53.968 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10631000 0 10631000 10631000 0 10631000 0 0 0 5844 1014 5980 15444 24061 24061 1 HPELFEALGIAQPK KQIKEIKEVIELPVKHPELFEALGIAQPKG KHPELFEALGIAQPKGVLLYGPPGTGKTLL K H P P K G 2 0 0 0 0 1 2 1 1 1 2 1 0 1 2 0 0 0 0 0 0 0 14 0 1548.83 Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QQM1;J3QRW1;J3QSE0;J3QRR3 Q59GS3 167 180 PSMC5 26S protease regulatory subunit 8 yes no 2 0.00056856 78.342 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6755700 0 6755700 6755700 0 6755700 0 0 0 5845 608 5981 15445 24062 24062 1 HPELNISEEGITK LKVRPDEIMRDYIQKHPELNISEEGITKST QKHPELNISEEGITKSTLTKAERQLKDKFD K H P T K S 0 0 1 0 0 0 3 1 1 2 1 1 0 0 1 1 1 0 0 0 0 0 13 0 1465.7413 E9PKP7;P17480;A8K962;B4DNQ1;O00164;Q05BZ1;B4DLB0 E9PKP7 230 242 UBTF Nucleolar transcription factor 1 yes no 2 7.2028E-61 205.31 2 2 0.95136 0.94268 24.826 4 Median 0.65808 0.7615 0.59726 2 0 Median 1.3792 1.1704 1.0155 2 0 Median 594350000 328870000 265470000 463770000 273640000 190130000 130580000 55236000 75347000 5846 1244 5982 15446;15447;15448;15449 24063;24064;24065;24066;24067;24068;24069;24070;24071;24072;24073;24074 24069 12 HPENYDLATLK SAVVVQGLPEGVAFKHPENYDLATLKWILE VAFKHPENYDLATLKWILENKAGISFIIKR K H P L K W 1 0 1 1 0 0 1 0 1 0 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1299.6459 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9;A0A0A0VEB4 X5D2J9 161 171 GTF2I;GTF2I-RARA General transcription factor II-I yes no 2 5.5823E-06 110.54 1 0.84022 0.89886 NaN 1 Median 0.84022 0.89886 NaN 1 0 Median NaN NaN NaN 0 0 Median 36951000 17885000 19066000 36951000 17885000 19066000 0 0 0 5847 789 5983 15450 24075 24075 1 HPEQIFPR FPSGLFEKRARPVMKHPEQIFPRQRAIQWG RARPVMKHPEQIFPRQRAIQWGEDGRPFHY K H P P R Q 0 1 0 0 0 1 1 0 1 1 0 0 0 1 2 0 0 0 0 0 0 0 8 0 1022.5298 Q86WV4;P82933 Q86WV4 33 40 MRPS9 28S ribosomal protein S9, mitochondrial yes no 2 0.020252 58.604 1 1.4913 1.4741 NaN 1 Median 1.4913 1.4741 NaN 1 0 Median NaN NaN NaN 0 0 Median 15138000 6214800 8923500 15138000 6214800 8923500 0 0 0 5848 1670 5984 15451 24076 24076 1 HPFAQAVGR ESYSAEYAVFETGARHPFAQAVGRNIANPT FETGARHPFAQAVGRNIANPTAMLLSASNM R H P G R N 2 1 0 0 0 1 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 9 0 981.51445 A0A087WZN1;O43837;A0A0D9SG66;Q9UIC5;A0A087X2E5 A0A087WZN1 309 317 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.014435 55.676 1 1.1806 1.2003 NaN 1 Median 1.1806 1.2003 NaN 1 0 Median NaN NaN NaN 0 0 Median 27561000 11182000 16379000 27561000 11182000 16379000 0 0 0 5849 439 5985 15452 24077 24077 1 HPFSFPLENQAR FFVTKKPTSQIPETKHPFSFPLENQAREAV ETKHPFSFPLENQAREAVSSAFFSLLQTLS K H P A R E 1 1 1 0 0 1 1 0 1 0 1 0 0 2 2 1 0 0 0 0 0 0 12 0 1441.7102 Q9BQG0;I3L1L3;I3L2H8 Q9BQG0 499 510 MYBBP1A Myb-binding protein 1A yes no 2 0.016142 43.308 2 1.0615 0.89679 4.109 2 Median NaN NaN NaN 0 0 Median 1.0615 0.89679 4.109 2 0 Median 12746000 6464900 6281200 0 0 0 12746000 6464900 6281200 5850 1997 5986 15453;15454 24078;24079 24078 2 HPGSFDVVHVK GANLGRIGVITNRERHPGSFDVVHVKDANG NRERHPGSFDVVHVKDANGNSFATRLSNIF R H P V K D 0 0 0 1 0 0 0 1 2 0 0 1 0 1 1 1 0 0 0 3 0 0 11 0 1220.6302 B2R491;P62701;Q96IR1;Q53HV1;C9JEH7;A4FU11;Q496E4;P22090 B2R491 201 211 RPS4X;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1 yes no 3 0.00010483 68.132 1 1.1065 1.1915 NaN 1 Median 1.1065 1.1915 NaN 1 0 Median NaN NaN NaN 0 0 Median 33534000 16066000 17468000 33534000 16066000 17468000 0 0 0 5851 824 5987 15455 24080;24081 24081 2 HPHDIIDDINSGAVECPAS ILGTAQSVGCNVDGRHPHDIIDDINSGAVE IIDDINSGAVECPAS_______________ R H P A S - 2 0 1 3 1 0 1 1 2 3 0 0 0 0 2 2 0 0 0 1 0 0 19 0 2045.9113 P30050;Q59FI9 P30050 147 165 RPL12 60S ribosomal protein L12 yes no 2;3 4.2773E-32 109.36 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 380120000 0 0 338770000 0 0 41345000 0 0 5852 1532 5988 15456;15457;15458;15459;15460 24082;24083;24084;24085;24086 24085 5 HPMDLSTVK DASALGLHDYHDIIKHPMDLSTVKRKMENR YHDIIKHPMDLSTVKRKMENRDYRDAQEFA K H P V K R 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 1 1 0 0 1 0 0 9 0 1026.5168 A0A024R8H6;Q15059;B4DS09;A0A140F1N4;H0YDJ7;U3KPW0;A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7;E9PIQ3 A0A024RCR5 392 400 BRD3;BRD2 Bromodomain-containing protein 3;Bromodomain-containing protein 2 no no 2 0.0080189 57.047 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5853 367;249 5989 15461 24087 24087 188 1 HPNIVSLQDVLMQDSR PSTAIREISLLKELRHPNIVSLQDVLMQDS PNIVSLQDVLMQDSRLYLIFEFLSMDLKKY R H P S R L 0 1 1 2 0 2 0 0 1 1 2 0 1 0 1 2 0 0 0 2 0 0 16 0 1850.9309 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;A0A024QZJ8;E5RIU6;B7Z3D6 A0A024QZP7 60 75 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2;3 1.352E-12 114.63 3 1.589 1.626 2.2616 2 Median 1.589 1.626 2.2616 2 0 Median NaN NaN NaN 0 0 Median 56615000 16154000 40461000 56615000 16154000 40461000 0 0 0 5854 25 5990 15462;15463;15464 24088;24089;24090 24088 11 3 HPPAPAEPSSDLASK EWLQDLKEKGPTLLKHPPAPAEPSSDLASK HPPAPAEPSSDLASKLREAEETQSTLQAEC K H P S K L 3 0 0 1 0 0 1 0 1 0 1 1 0 0 4 3 0 0 0 0 0 0 15 0 1502.7365 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5;B3KSG1;A0A087WU26 A0A0A0MRV0 1099 1113 RRBP1 Ribosome-binding protein 1 yes no 2 0.00067504 78.903 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5855 471 5991 15465 24091 24091 1 HPPVESGDTPK STTARKVGRPGRKRKHPPVESGDTPKDPAV RKRKHPPVESGDTPKDPAVISKSPSMAQDS K H P P K D 0 0 0 1 0 0 1 1 1 0 0 1 0 0 3 1 1 0 0 1 0 0 11 0 1162.5619 Q9Y6K1;F8WE91;Q59HC6 Q9Y6K1 57 67 DNMT3A DNA (cytosine-5)-methyltransferase 3A yes no 2 0.013734 47.198 1 0.83559 0.85065 NaN 1 Median 0.83559 0.85065 NaN 1 0 Median NaN NaN NaN 0 0 Median 4517200 2116300 2400900 4517200 2116300 2400900 0 0 0 5856 2153 5992 15466 24092 24092 1 HPSKPDPSGECNPDLR TKTPSSDVLVFDYTKHPSKPDPSGECNPDL PSKPDPSGECNPDLRLRGHQKEGYGLSWNP K H P L R L 0 1 1 2 1 0 1 1 1 0 1 1 0 0 4 2 0 0 0 0 0 0 16 1 1804.8162 Q09028 Q09028 157 172 RBBP4 Histone-binding protein RBBP4 yes yes 2;3 5.7558E-07 96.163 5 1 0.70837 0.82247 32.085 4 Median 0.73975 0.86474 12.641 3 0 Plateau 1.7121 1.4122 NaN 1 0 Median 94709000 56541000 38168000 90525000 55010000 35514000 4183800 1530300 2653400 5857 1695 5993 15467;15468;15469;15470;15471;15472 24093;24094;24095;24096;24097;24098;24099;24100;24101 24099 9 HPSSPECLVSAQK ERLDFVCSFLQKNRKHPSSPECLVSAQKVL RKHPSSPECLVSAQKVLEGSELELAKMTML K H P Q K V 1 0 0 0 1 1 1 0 1 0 1 1 0 0 2 3 0 0 0 1 0 0 13 0 1438.6875 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;G1UI36;F5H2F3;F5H3L6;F5H0Z7;F5H763;Q86XH4;F5GZW1;F5H1L0;F8W6T3;A8K394;Q4LE64;Q14980 Q4LE64 74 86 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.00011433 75.509 1 2 1.3482 1.0502 11.687 3 Median 0.86302 0.88727 NaN 1 0 Median 1.3592 1.08 3.9565 2 0 Median 15612000 7811100 7800700 9524300 5268700 4255600 6087500 2542400 3545100 5858 186;1747;718 5994 15473;15474;15475 24102;24103;24104 24102 3 HPVLIFITEK DEEVIKWTKFFVVFRHPVLIFITEKHGNYF FVVFRHPVLIFITEKHGNYFAYVQMFNSRI R H P E K H 0 0 0 0 0 0 1 0 1 2 1 1 0 1 1 0 1 0 0 1 0 0 10 0 1195.6965 Q9H8H0;J3QR28 Q9H8H0 164 173 NOL11 Nucleolar protein 11 yes no 2 1.5192E-12 126.41 3 2 1.0361 0.94806 8.2756 4 Median 0.8766 0.93263 11.023 2 0 Median 1.1854 0.94989 8.9765 2 0 Median 78067000 36048000 42019000 53587000 24659000 28928000 24480000 11389000 13091000 5859 2042 5995 15476;15477;15478;15479;15480 24105;24106;24107;24108;24109;24110;24111;24112 24109 8 HPYLPINSAAIK RRLCREILRPWHAARHPYLPINSAAIKAEC AARHPYLPINSAAIKAECTARLPEASQSPL R H P I K A 2 0 1 0 0 0 0 0 1 2 1 1 0 0 2 1 0 0 1 0 0 0 12 0 1322.7347 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q9BRL8;F8W9Y9 E7ESY4 498 509 MTA1 Metastasis-associated protein MTA1 yes no 2 0.0036838 65.347 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2309900 0 2309900 0 0 0 2309900 0 2309900 5860 1223 5996 15481 24113 24113 1 HQACLLLQK LPILVQHITGPVRPRHQACLLLQKTLSMRE GPVRPRHQACLLLQKTLSMREVRSCFEDPE R H Q Q K T 1 0 0 0 1 2 0 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1109.6015 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1028 1036 MYBBP1A Myb-binding protein 1A yes no 2 0.0074668 61.962 1 0.9737 0.79438 NaN 1 Median NaN NaN NaN 0 0 Median 0.9737 0.79438 NaN 1 0 Median 6058900 2930100 3128800 0 0 0 6058900 2930100 3128800 5861 1997 5997 15482 24114;24115 24115 2 HQAFEAELSANQSR EAYKDPSNLQGKVQKHQAFEAELSANQSRI KHQAFEAELSANQSRIDALEKAGQKLIDVN K H Q S R I 3 1 1 0 0 2 2 0 1 0 1 0 0 1 0 2 0 0 0 0 0 0 14 0 1586.7437 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 614 627 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0053546 55.452 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9728600 0 9728600 9728600 0 9728600 0 0 0 5862 523 5998 15483 24116 24116 1 HQAILLGNAEEQK RVREIMTFLVNDVLKHQAILLGNAEEQKKK LKHQAILLGNAEEQKKKKRSLWDTIKKKKI K H Q Q K K 2 0 1 0 0 2 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1449.7576 Q8IZT6;B3KWI2;Q4G1H2;Q4G1H0;A0A087WV76 Q8IZT6 132 144 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 0.0013251 76.332 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5520600 0 5520600 5520600 0 5520600 0 0 0 5863 1902 5999 15484 24117 24117 1 HQALLLDTNK EIAEYQLRLHEAEKKHQALLLDTNKQYEVE EAEKKHQALLLDTNKQYEVEIQTYREKLTS K H Q N K Q 1 0 1 1 0 1 0 0 1 0 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1151.6299 P49454;Q9UHT7;A0A087WTY4 P49454 2806 2815 CENPF Centromere protein F yes no 2 0.00024678 92.538 1 0.94433 0.94313 NaN 1 Median 0.94433 0.94313 NaN 1 0 Median NaN NaN NaN 0 0 Median 14166000 6913200 7252500 14166000 6913200 7252500 0 0 0 5864 1581 6000 15485 24118 24118 1 HQCTCIDGAVGCIPLCPQELSLPNLGCPNPR SRIYQNGESFQPNCKHQCTCIDGAVGCIPL PQELSLPNLGCPNPRLVKVTGQCCEEWVCD K H Q P R L 1 1 2 1 5 2 1 3 1 2 4 0 0 0 5 1 1 0 0 1 0 0 31 0 3532.6142 B4DI61;Q6FI18;O00622;Q53FA4;Q9UID7 B4DI61 95 125 CYR61 Protein CYR61 yes no 3 1.6078E-08 48.305 1 1 1.2345 1.1711 32.655 2 Median 1.4011 1.4753 NaN 1 0 Median 1.0878 0.92965 NaN 1 0 Median 61960000 27200000 34759000 23214000 10173000 13041000 38746000 17028000 21718000 5865 979 6001 15486;15487 24119;24120;24121;24122 24121 4 HQDQNSVACIEEK PSMHEPLQNEVFASRHQDQNSVACIEEKCY SRHQDQNSVACIEEKCYVLTFAEYCRFCAM R H Q E K C 1 0 1 1 1 2 2 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 13 0 1556.6889 A0A024R9K2;Q8TBE0 A0A024R9K2 695 707 BAHD1 Bromo adjacent homology domain-containing 1 protein yes no 2 2.8576E-09 122.39 1 0.85904 0.86632 NaN 1 Median 0.85904 0.86632 NaN 1 0 Median NaN NaN NaN 0 0 Median 4865600 3129600 1736000 4865600 3129600 1736000 0 0 0 5866 281 6002 15488 24123 24123 1 HQEGEIFDTEK LTDAYFKKKKLRKPRHQEGEIFDTEKEKYE RKPRHQEGEIFDTEKEKYEITEQRKIDQKA R H Q E K E 0 0 0 1 0 1 3 1 1 1 0 1 0 1 0 0 1 0 0 0 0 0 11 0 1331.5994 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 227 237 RPL6 60S ribosomal protein L6 yes no 2 6.5879E-95 240.85 2 2 0.89223 0.89604 28.049 4 Median 0.97155 1.1462 2.0891 2 0 Median 0.82871 0.70554 1.0698 2 0 Median 980130000 499970000 480150000 845670000 426370000 419300000 134460000 73601000 60856000 5867 342 6003 15489;15490;15491;15492 24124;24125;24126;24127;24128;24129;24130;24131;24132;24133;24134;24135;24136;24137;24138;24139 24127 16 HQEHILR ERLERQHWTMTKIQKHQEHILRFASWALES WTMTKIQKHQEHILRFASWALESDNNTALL K H Q L R F 0 1 0 0 0 1 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 7 0 931.4988 B2R8R5;Q13263 B2R8R5 341 347 TRIM28 Transcription intermediary factor 1-beta yes no 3 0.051182 33.813 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2797300 0 2797300 2797300 0 2797300 0 0 0 5868 862 6004 15493 24140 24140 1 HQELFR RLRVQQAALRAARLRHQELFRLRGIKAQVA AALRAARLRHQELFRLRGIKAQVALRLAEL R H Q F R L 0 1 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 6 0 828.42424 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;Q9H7J4 Q7L4X7 361 366 GLTSCR2;FLJ00085 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.036471 107.49 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8364900 8364900 0 8364900 8364900 0 0 0 0 5869 1068 6005 15494 24141 24141 1 HQELLQK ARRLRWLQQEEEERRHQELLQKKKEEEQER QQEEEERRHQELLQKKKEEEQERLRKAAEA R H Q Q K K 0 0 0 0 0 2 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 894.49232 Q9NQS7;B3KPD3 Q9NQS7 660 666 INCENP Inner centromere protein yes no 2 0.0071286 129.55 2 1 1.5248 1.568 14.845 3 Median 1.3027 1.4023 15.79 2 0 Median 2.0503 1.6613 NaN 1 0 Median 151010000 67947000 83060000 126460000 60152000 66312000 24543000 7794800 16748000 5870 2059 6006 15495;15496;15497 24142;24143;24144;24145 24143 4 HQGVMVGMGQK DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL R H Q Q K D 0 0 0 0 0 2 0 3 1 0 0 1 2 0 0 0 0 0 0 2 0 0 11 0 1170.5638 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q7Z7J6;A6NL76;Q13707;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;C9JUM1;Q562R1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B3KUD3;G5E9R0;E7EVS6;C9JTX5;C9JZR7;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;A1E282 P63261 40 50 ACTA2;ACTG2;ACTA1;ACTC1;ACTB;ACTBL2;PS1TP5BP1;ACTG1 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 8.2702E-18 143.03 4 6 3.2961 2.6434 29.776 6 Median 1.6557 1.6339 19.405 2 0 Median 3.4176 2.7158 8.2885 4 0 Median 123180000 22138000 101040000 68430000 8560800 59869000 54748000 13577000 41171000 5871 1624;1656;1100 6007;6008;6009 15498;15499;15500;15501;15502;15503;15504;15505;15506;15507 24146;24147;24148;24149;24150;24151;24152;24153;24154;24155;24156;24157 24147 841;842 12 HQLASISSPVVTSLLINLGSPVK YVGCAMLSSQKTQCKHQLASISSPVVTSLL PVVTSLLINLGSPVKEVRRAAIQCLQALSG K H Q V K E 1 0 1 0 0 1 0 1 1 2 4 1 0 0 2 5 1 0 0 3 0 0 23 0 2359.3475 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1 B2RWN5 910 932 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 1.0884E-138 226.99 2 0.96039 1.1044 4.7064 2 Median 0.96039 1.1044 4.7064 2 0 Median NaN NaN NaN 0 0 Median 424010000 222010000 202000000 424010000 222010000 202000000 0 0 0 5872 897 6010 15508;15509 24158;24159;24160 24159 3 HQLEDLR KDPPIYSVGAFENFRHQLEDLRQLDNFKHP VGAFENFRHQLEDLRQLDNFKHPQRDFRQP R H Q L R Q 0 1 0 1 0 1 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 909.46683 B9ZVT1;Q8IXT5 B9ZVT1 529 535 RBM12B RNA-binding protein 12B yes no 2 0.032931 64.757 1 1.1217 1.1127 NaN 1 Median 1.1217 1.1127 NaN 1 0 Median NaN NaN NaN 0 0 Median 15904000 7631400 8272700 15904000 7631400 8272700 0 0 0 5873 1122 6011 15510 24161 24161 1 HQLEEELR LETDRRGALKAQTWKHQLEEELRQQKEAAC LKAQTWKHQLEEELRQQKEAACFKARPNTV K H Q L R Q 0 1 0 0 0 1 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1052.5251 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 610 617 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 8.0927E-09 155.07 2 2 0.95117 0.91937 17.855 4 Median 0.71388 0.80319 1.3394 2 0 Median 1.3 1.0876 5.99 2 0 Median 235440000 126510000 108930000 205000000 114090000 90906000 30442000 12415000 18027000 5874 1837 6012 15511;15512;15513;15514 24162;24163;24164;24165;24166;24167;24168 24164 7 HQLNELGSESAK FGDDDEIPQELLLGKHQLNELGSESAKIKA LGKHQLNELGSESAKIKAMGIMDKLSTDKT K H Q A K I 1 0 1 0 0 1 2 1 1 0 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1311.6419 Q6IEH8;Q6KC79 Q6IEH8 1236 1247 NIPBL Nipped-B-like protein yes no 2 1.2654E-18 149.23 2 1 0.75866 0.69069 15.949 2 Median 0.76234 0.77314 NaN 1 0 Median 0.755 0.61702 NaN 1 0 Median 20255000 9448900 10806000 17630000 8148200 9481800 2625300 1300700 1324500 5875 1843 6013 15515;15516;15517 24169;24170;24171;24172;24173 24170 5 HQNTEVVLYLAR SAVQMYENCLRKFYKHQNTEVVLYLARALF FYKHQNTEVVLYLARALFKCGKLQECKQTL K H Q A R A 1 1 1 0 0 1 1 0 1 0 2 0 0 0 0 0 1 0 1 2 0 0 12 0 1441.7678 A8K6X9;Q6PD62 A8K6X9 714 725 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.041898 45.598 1 1.5459 1.2926 NaN 1 Median NaN NaN NaN 0 0 Median 1.5459 1.2926 NaN 1 0 Median 3711700 1481900 2229900 0 0 0 3711700 1481900 2229900 5876 765 6014 15518 24174 24174 1 HQNVQLPR GHKLHGKPIRITLSKHQNVQLPREGQEDQG IRITLSKHQNVQLPREGQEDQGLTKDYGNS K H Q P R E 0 1 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 8 0 990.53591 A6NLN1;A0A0U1RRM4;P26599;K7EK45;A0A0D9SF20;A0A087WUW5 A6NLN1 407 414 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 1.8174E-05 142.64 2 2.2055 2.3425 NaN 1 Median 2.2055 2.3425 NaN 1 0 Median NaN NaN NaN 0 0 Median 89914000 12227000 77687000 89914000 12227000 77687000 0 0 0 5877 592 6015 15519;15520 24175;24176 24175 2 HQPASASSTAASPAHPAK AAPFQTSQASASAPRHQPASASSTAASPAH ASASSTAASPAHPAKLRAQTTAQASTPGQP R H Q A K L 6 0 0 0 0 1 0 0 2 0 0 1 0 0 3 4 1 0 0 0 0 0 18 0 1714.8387 Q96L91 Q96L91 1536 1553 EP400 E1A-binding protein p400 yes yes 3 0.0040481 18.922 1 1.0618 0.91959 NaN 1 Median NaN NaN NaN 0 0 Median 1.0618 0.91959 NaN 1 0 Median 633300 279600 353690 0 0 0 633300 279600 353690 5878 1977 6016 15521 24177 24177 1 HQSFVLVGETGSGK PVWEYKDRFTDILVRHQSFVLVGETGSGKT RHQSFVLVGETGSGKTTQIPQWCVEYMRSL R H Q G K T 0 0 0 0 0 1 1 3 1 0 1 1 0 1 0 2 1 0 0 2 0 0 14 0 1444.731 O43143;B4E0S6 O43143 153 166 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2;3 0.00017099 76.728 4 3 1.1766 1.1871 14.642 6 Median 1.1461 1.2432 2.6978 3 0 Median 1.1792 0.94661 12.55 3 0 Median 179490000 83034000 96458000 150670000 69754000 80921000 28818000 13281000 15537000 5879 1379 6017 15522;15523;15524;15525;15526;15527;15528 24178;24179;24180;24181;24182;24183;24184;24185;24186;24187;24188;24189 24179 12 HQVEQLSSSLK AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ QGLRHQVEQLSSSLKQKEQQLKEVAEKQEA R H Q L K Q 0 0 0 0 0 2 1 0 1 0 2 1 0 0 0 3 0 0 0 1 0 0 11 0 1254.6568 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 551 561 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 8.1104E-23 154.15 2 1 1.7987 1.9443 NaN 1 Median 1.7987 1.9443 NaN 1 0 Median NaN NaN NaN 0 0 Median 64783000 14361000 50422000 62663000 12241000 50422000 2120100 2120100 0 5880 186;1747;718 6018 15529;15530;15531 24190;24191;24192;24193 24192 4 HQVEYLGLK NETKKPRDWEESRVKHQVEYLGLKENIRVR EESRVKHQVEYLGLKENIRVRRAGYAYRRI K H Q L K E 0 0 0 0 0 1 1 1 1 0 2 1 0 0 0 0 0 0 1 1 0 0 9 0 1085.5869 Q4KMR3;Q12965;Q6ZNI9;O00160;B0I1T1;Q4LE34 Q4KMR3 605 613 MYO1E;FLJ00395;MYO1F;MYO1F variant protein Unconventional myosin-Ie;Unconventional myosin-If yes no 2 0.0005245 98.044 1 0.81431 0.83392 NaN 1 Median 0.81431 0.83392 NaN 1 0 Median NaN NaN NaN 0 0 Median 25585000 13048000 12537000 25585000 13048000 12537000 0 0 0 5881 1703 6019 15532 24194 24194 1 HQVIQTVHPVEK KGPISDALAHHLRERHQVIQTVHPVEKKLT RERHQVIQTVHPVEKKLTYKCIHCLGVYTS R H Q E K K 0 0 0 0 0 2 1 0 2 1 0 1 0 0 1 0 1 0 0 3 0 0 12 0 1413.7728 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 647 658 ADNP Activity-dependent neuroprotector homeobox protein yes no 2;3 3.5783E-09 147.62 4 2 0.71541 0.74537 38.465 5 Median 0.67552 0.74078 2.0111 3 0 Plateau 1.8306 1.4706 2.7578 2 0 Median 125940000 71556000 54380000 115650000 67555000 48095000 10285000 4000600 6284900 5882 878 6020 15533;15534;15535;15536;15537;15538 24195;24196;24197;24198;24199;24200;24201;24202;24203 24199 8 HQVSVEGTNQTDVK EKEVPPGSAIIHIKKHQVSVEGTNQTDVKA KHQVSVEGTNQTDVKAVGGPAKLLVVSLEE K H Q V K A 0 0 1 1 0 2 1 1 1 0 0 1 0 0 0 1 2 0 0 3 0 0 14 0 1540.7481 Q14676;B4DYH4 Q14676 541 554 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 1.3363E-69 201.48 2 0.62613 0.62624 8.4282 2 Median 0.62613 0.62624 8.4282 2 0 Median NaN NaN NaN 0 0 Median 21414000 12441000 8972500 21414000 12441000 8972500 0 0 0 5883 1738 6021 15539;15540 24204;24205;24206;24207;24208 24206 5 HRDFVAEPMGEK ______________________________ SQKHRDFVAEPMGEKPVGSLAGIGEVLGKK K H R E K P 1 1 0 1 0 0 2 1 1 0 0 1 1 1 1 0 0 0 0 1 0 0 12 1 1414.6663 A0A024R5H0;O75531;E9PJJ8 A0A024R5H0 7 18 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2;3 0.00051303 59.592 3 1.0532 1.2483 9.4915 3 Plateau 1.0532 1.2483 9.4915 3 0 Plateau NaN NaN NaN 0 0 Median 129590000 65645000 63945000 129590000 65645000 63945000 0 0 0 5884 181 6022 15541;15542;15543 24209;24210;24211;24212 24210 147 4 HSATPFLK FLAVCSEAKGLVTLKHSATPFLKVEPFLPG KGLVTLKHSATPFLKVEPFLPGHYEVLDLK K H S L K V 1 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 0 0 0 8 0 899.4865 B4DY32;P08243;F8WEJ5;C9J057 B4DY32 86 93 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2 0.0077322 81.784 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7888700 0 7888700 7888700 0 7888700 0 0 0 5885 1051 6023 15544 24213 24213 1 HSDASLTDTVNK HRLFNWLSETLANARHSDASLTDTVNKALG NARHSDASLTDTVNKALGLSTDDAYEELRQ R H S N K A 1 0 1 2 0 0 0 0 1 0 1 1 0 0 0 2 2 0 0 1 0 0 12 0 1286.6103 A0A024R363;A0A087X0F1;Q9UK61 A0A024R363 388 399 C3orf63;FAM208A Protein FAM208A no no 2 9.4323E-104 243.53 2 0.92867 0.94979 18.251 2 Median 0.92867 0.94979 18.251 2 0 Median NaN NaN NaN 0 0 Median 29797000 16366000 13431000 29797000 16366000 13431000 0 0 0 5886 129;2105 6024 15545;15546 24214;24215;24216;24217 24216 4 HSELLQK EPKTRAGGFASALERHSELLQKGSPKNVES GFASALERHSELLQKGSPKNVESFASMLRH R H S Q K G 0 0 0 0 0 1 1 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 7 0 853.46577 A0A0S2Z5D2;Q53G62;A0A0S2Z563;A0A0S2Z5H0;Q9Y2Q9;H7C5V3;E5RFT8 A0A0S2Z5D2 59 65 MRPS28 28S ribosomal protein S28, mitochondrial yes no 2 0.026969 84.064 1 0.6977 0.68553 NaN 1 Median 0.6977 0.68553 NaN 1 0 Median NaN NaN NaN 0 0 Median 23345000 15155000 8190700 23345000 15155000 8190700 0 0 0 5887 576 6025 15547 24218 24218 1 HSGNITFDEIVNIAR LKEPPRDRKKQKNIKHSGNITFDEIVNIAR HSGNITFDEIVNIARQMRHRSLARELSGTI K H S A R Q 1 1 2 1 0 0 1 1 1 3 0 0 0 1 0 1 1 0 0 1 0 0 15 0 1684.8533 P30050 P30050 100 114 RPL12 60S ribosomal protein L12 yes yes 2;3 2.0367E-38 190.1 4 4 0.97779 1.0486 6.9995 8 Linear 0.91502 1.0399 2.5818 4 0 Linear 1.0563 0.91495 2.0486 4 0 Median 695420000 351510000 343910000 522120000 268030000 254090000 173310000 83487000 89820000 5888 1532 6026 15548;15549;15550;15551;15552;15553;15554;15555 24219;24220;24221;24222;24223;24224;24225;24226;24227;24228;24229;24230;24231;24232;24233;24234;24235;24236 24230 18 HSGPNSADSANDGFVR EVFKSHRTEMDWVLKHSGPNSADSANDGFV SGPNSADSANDGFVRLRGLPFGCTKEEIVQ K H S V R L 2 1 2 2 0 0 0 2 1 0 0 0 0 1 1 3 0 0 0 1 0 0 16 0 1629.7132 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 99 114 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2;3 4.2605E-81 206.66 5 4 1.3312 1.3191 34.863 8 Median 1.6528 1.8571 4.0982 4 0 Median 1.13 0.93798 4.0782 4 0 Median 385040000 148360000 236680000 357590000 136460000 221130000 27450000 11898000 15552000 5889 234 6027 15556;15557;15558;15559;15560;15561;15562;15563;15564 24237;24238;24239;24240;24241;24242;24243;24244;24245;24246;24247;24248;24249;24250;24251;24252 24237 16 HSIAQLDPEALGNIK GGGESLRLLASDLQRHSIAQLDPEALGNIK HSIAQLDPEALGNIKKLSNRLAQICSSIRT R H S I K K 2 0 1 1 0 1 1 1 1 2 2 1 0 0 1 1 0 0 0 0 0 0 15 0 1604.8522 Q53HL2;A8K7A2 Q53HL2 249 263 CDCA8 Borealin yes no 2;3 5.1426E-11 107.65 3 4 1.3418 1.1911 6.26 7 Median 1.049 1.2224 7.1222 3 0 Plateau 1.4817 1.2159 5.3545 4 0 Median 651770000 307670000 344100000 514040000 249430000 264610000 137730000 58239000 79489000 5890 1789 6028 15565;15566;15567;15568;15569;15570;15571 24253;24254;24255;24256;24257;24258;24259;24260;24261;24262;24263;24264;24265;24266 24253 14 HSIAQLDPEALGNIKK GGGESLRLLASDLQRHSIAQLDPEALGNIK SIAQLDPEALGNIKKLSNRLAQICSSIRTH R H S K K L 2 0 1 1 0 1 1 1 1 2 2 2 0 0 1 1 0 0 0 0 0 0 16 1 1732.9472 Q53HL2;A8K7A2 Q53HL2 249 264 CDCA8 Borealin yes no 3 0.019935 20.939 2 1.8183 1.5607 8.907 2 Median NaN NaN NaN 0 0 Median 1.8183 1.5607 8.907 2 0 Median 9877200 3540700 6336500 0 0 0 9877200 3540700 6336500 5891 1789 6029 15572;15573 24267;24268;24269 24269 3 HSLAFVVR RRLEVKPHALELPDKHSLAFVVRIERIDGV ALELPDKHSLAFVVRIERIDGVSLLVQRTI K H S V R I 1 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 2 0 0 8 0 927.52904 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 94 101 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.0071702 84.097 1 1.0922 0.89766 NaN 1 Median NaN NaN NaN 0 0 Median 1.0922 0.89766 NaN 1 0 Median 11940000 5576000 6364200 0 0 0 11940000 5576000 6364200 5892 378 6030 15574 24270;24271 24270 2 HSLALGSATEDK ETLQEEVIALFDQTRHSLALGSATEDKDSM QTRHSLALGSATEDKDSMETDDCSRSRHRD R H S D K D 2 0 0 1 0 0 1 1 1 0 2 1 0 0 0 2 1 0 0 0 0 0 12 0 1227.6095 Q5SRE5;Q9BS12 Q5SRE5 1251 1262 NUP188 Nucleoporin NUP188 homolog yes no 2 0.00083731 84.658 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6946300 6946300 0 6946300 6946300 0 0 0 0 5893 1816 6031 15575 24272 24272 1 HSLECTLILTEGDSAK KGIPKLDDANDAGGKHSLECTLILTEGDSA SLECTLILTEGDSAKSLAVSGLGVIGRDRY K H S A K S 1 0 0 1 1 0 2 1 1 1 3 1 0 0 0 2 2 0 0 0 0 0 16 0 1772.8615 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 444 459 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 2.7795E-05 85.457 2 2 0.92263 0.72924 18.691 3 Median 0.54756 0.56539 NaN 1 0 Median 0.97307 0.77043 7.7703 2 0 Median 18643000 10998000 7645400 10993000 7287800 3704800 7650400 3709800 3940700 5894 1679 6032 15576;15577;15578;15579 24273;24274;24275;24276;24277 24273 4 HSLGSVQSTATQSNVEK AGANGCTLSYQNSGKHSLGSVQSTATQSNV LGSVQSTATQSNVEKADSNNLFNTGSSGPG K H S E K A 1 0 1 0 0 2 1 1 1 0 1 1 0 0 0 4 2 0 0 2 0 0 17 0 1771.8701 Q9UIF8;Q8NC87 Q9UIF8 1506 1522 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B yes no 2 4.1233E-05 79.466 1 0.5815 0.58664 NaN 1 Median 0.5815 0.58664 NaN 1 0 Median NaN NaN NaN 0 0 Median 7889800 5273700 2616000 7889800 5273700 2616000 0 0 0 5895 2102 6033 15580 24278 24278 1 HSLNSSSASTTEPDFQK EVPFDVPELWYEDEKHSLNSSSASTTEPDF LNSSSASTTEPDFQKDILIACRLNQKKGAY K H S Q K D 1 0 1 1 0 1 1 0 1 0 1 1 0 1 1 5 2 0 0 0 0 0 17 0 1834.8333 E5KNY5;P42704;B4DSR0 E5KNY5 1021 1037 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 5.1208E-06 94.023 4 2.2748 2.3459 8.6156 2 Median 2.2748 2.3459 8.6156 2 0 Median NaN NaN NaN 0 0 Median 44761000 13511000 31250000 44761000 13511000 31250000 0 0 0 5896 1207 6034 15581;15582;15583;15584 24279;24280;24281;24282;24283;24284;24285 24280 7 HSLSGRPLK KMEESMKKAAEVLNKHSLSGRPLKVKEDPD AEVLNKHSLSGRPLKVKEDPDGEHARRAMQ K H S L K V 0 1 0 0 0 0 0 1 1 0 2 1 0 0 1 2 0 0 0 0 0 0 9 1 993.57196 P52272;A0A087X0X3;Q59ES8;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7 P52272 135 143 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 3 0.01829 61.582 1 1.4453 1.6534 NaN 1 Median 1.4453 1.6534 NaN 1 0 Median NaN NaN NaN 0 0 Median 22127000 8633300 13493000 22127000 8633300 13493000 0 0 0 5897 1599 6035 15585 24286;24287 24287 2 HSMNILNR RFGKRGLAVNMVDSKHSMNILNRIQEHFNK VNMVDSKHSMNILNRIQEHFNKKIERLDTD K H S N R I 0 1 2 0 0 0 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 0 8 0 983.49708 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;Q59FQ9;Q68DY7;B4DL69;Q69YM2;A0A024QZ90;I3L352;B4DS24;Q9HBZ9;Q7Z4W5 I3L0H8 415 422 DDX19A;DDX19B;DKFZp686C21137;hCG_1998531;DKFZp762C1313 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 0.0041672 77.923 1 3.2268 3.3583 NaN 1 Median 3.2268 3.3583 NaN 1 0 Median NaN NaN NaN 0 0 Median 21901000 6020500 15881000 21901000 6020500 15881000 0 0 0 5898 593 6036 15586 24288 24288 452 1 HSNVNLTIFTAR PCPECAGEVAEFLARHSNVNLTIFTARLCY LARHSNVNLTIFTARLCYFWDTDYQEGLCS R H S A R L 1 1 2 0 0 0 0 0 1 1 1 0 0 1 0 1 2 0 0 1 0 0 12 0 1371.7259 Q6ICH2;B2CML4;Q96AK3;A0A087WX48;M4VR43;F2YHL7;Q8IUX4;M4VP52;Q59GY0;Q9NRW3 Q6ICH2 123 134 bK150C2.9;APOBEC3DE;APOBEC3D;APOBEC3F;APOBEC3C DNA dC->dU-editing enzyme APOBEC-3D;DNA dC->dU-editing enzyme APOBEC-3F;DNA dC->dU-editing enzyme APOBEC-3C no no 2 0.0011194 81.625 1 2 0.9228 0.95997 NaN 1 Median 0.9228 0.95997 NaN 1 0 Median NaN NaN NaN 0 0 Median 34462000 23600000 10862000 22010000 11148000 10862000 12452000 12452000 0 5899 823;1357 6037 15587;15588;15589 24289;24290;24291 24290 3 HSNVVILTTSNITEK RVVNAVLTQIDQIKRHSNVVILTTSNITEK HSNVVILTTSNITEKIDVAFVDRADIKQYI R H S E K I 0 0 2 0 0 0 1 0 1 2 1 1 0 0 0 2 3 0 0 2 0 0 15 0 1654.889 Q15645 Q15645 290 304 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2;3 0.00026904 62.378 2 1.745 1.7862 4.7553 2 Median 1.745 1.7862 4.7553 2 0 Median NaN NaN NaN 0 0 Median 19464000 5841800 13622000 19464000 5841800 13622000 0 0 0 5900 1763 6038 15590;15591 24292;24293 24293 2 HSPIAPSSPSPQVLAQK FSTPTGSRTDSQSVRHSPIAPSSPSPQVLA PIAPSSPSPQVLAQKYSLVAKQESVVRRAS R H S Q K Y 2 0 0 0 0 2 0 0 1 1 1 1 0 0 4 4 0 0 0 1 0 0 17 0 1742.9315 Q9NQS7;B3KPD3 Q9NQS7 305 321 INCENP Inner centromere protein yes no 2;3 2.627E-07 90.759 4 3 1.5389 1.4404 16.073 6 Median 1.2733 1.2741 14.886 3 0 Median 1.9094 1.55 3.6972 3 0 Median 82269000 32623000 49646000 65531000 26081000 39450000 16738000 6541800 10196000 5901 2059 6039 15592;15593;15594;15595;15596;15597;15598 24294;24295;24296;24297;24298;24299;24300;24301;24302;24303;24304 24296 11 HSPLTQMGPAK KGSPKNVESFASMLRHSPLTQMGPAKDKLV SMLRHSPLTQMGPAKDKLVIGRIFHIVEND R H S A K D 1 0 0 0 0 1 0 1 1 0 1 1 1 0 2 1 1 0 0 0 0 0 11 0 1165.5914 A0A0S2Z5D2;Q53G62;A0A0S2Z563;A0A0S2Z5H0;Q9Y2Q9;E5RGC7;H0YAT2;H7C5V3;U3KQQ8;H0YC42;A5Y5A3 A0A0S2Z5D2 80 90 MRPS28 28S ribosomal protein S28, mitochondrial yes no 2 0.010499 43.149 2 2.5791 2.6073 NaN 1 Median 2.5791 2.6073 NaN 1 0 Median NaN NaN NaN 0 0 Median 15416000 2829700 12587000 15416000 2829700 12587000 0 0 0 5902 576 6040 15599;15600 24305;24306 24305 431 2 HSQAVEELAEQLEQTK EAKTHEAQIQEMRQKHSQAVEELAEQLEQT SQAVEELAEQLEQTKRVKANLEKAKQTLEN K H S T K R 2 0 0 0 0 3 4 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16 0 1838.901 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1194 1209 MYH9 Myosin-9 yes no 2;3 3.7361E-110 235.88 8 3 1.7327 1.9173 30.357 7 Median 1.6765 1.8778 30.288 5 0 Median 2.9141 2.3219 1.6493 2 0 Median 236150000 69175000 166980000 185800000 58712000 127080000 50358000 10463000 39895000 5903 81 6041 15601;15602;15603;15604;15605;15606;15607;15608;15609;15610;15611 24307;24308;24309;24310;24311;24312;24313;24314;24315;24316;24317;24318;24319;24320;24321;24322 24308 16 HSQELPAILDDTTLSGSDR LKEDTLEFLIKVVSRHSQELPAILDDTTLS LPAILDDTTLSGSDRNAHLNALKMNCYALI R H S D R N 1 1 0 3 0 1 1 1 1 1 3 0 0 0 1 3 2 0 0 0 0 0 19 0 2053.9916 B3KMS0;Q15021;B4E0B7;A0PJ76;F5GZK7 B3KMS0 92 110 NCAPD2 Condensin complex subunit 1 yes no 2;3 2.77E-32 119.38 8 3 1.1486 1.1397 30.001 6 Median 0.87726 1.0079 27.427 3 0 Plateau 1.5472 1.3277 2.5032 3 0 Plateau 604560000 361450000 243110000 396130000 279950000 116170000 208430000 81492000 126940000 5904 908 6042 15612;15613;15614;15615;15616;15617;15618;15619;15620;15621;15622 24323;24324;24325;24326;24327;24328;24329;24330;24331;24332;24333;24334;24335;24336;24337;24338;24339 24323 17 HSQFIGYPITLFVEK TEYLEERRIKEIVKKHSQFIGYPITLFVEK HSQFIGYPITLFVEKERDKEVSDDEAEEKE K H S E K E 0 0 0 0 0 1 1 1 1 2 1 1 0 2 1 1 1 0 1 1 0 0 15 0 1777.9403 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;G3V2J8;Q58FG0 K9JA46 210 224 EL52;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 2;3 0.0011147 57.267 3 2.1151 1.7161 9.2406 3 Median NaN NaN NaN 0 0 Median 2.1151 1.7161 9.2406 3 0 Median 10969000 3248200 7720600 0 0 0 10969000 3248200 7720600 5905 1348 6043 15623;15624;15625 24340;24341;24342;24343 24343 4 HSQFLGYPITLYLEK TEYLEEMQVKEVVEKHSQFLGYPITLYLEK HSQFLGYPITLYLEKEREKEISDGKAEEEK K H S E K E 0 0 0 0 0 1 1 1 1 1 3 1 0 1 1 1 1 0 2 0 0 0 15 0 1807.9509 Q58FF8 Q58FF8 127 141 HSP90AB2P Putative heat shock protein HSP 90-beta 2 yes yes 2;3 2.9844E-47 176.89 4 3 2.3517 2.4904 41.253 7 Median 2.4904 2.8071 5.1111 4 0 Linear 1.5539 1.2162 6.4394 3 0 Median 293680000 91903000 201780000 220560000 63576000 156980000 73124000 28327000 44797000 5906 1800 6044 15626;15627;15628;15629;15630;15631;15632 24344;24345;24346;24347;24348;24349;24350;24351;24352;24353;24354;24355;24356;24357;24358;24359 24346 16 HSQPATPTPLQSR AERYAPDKTSTVLTRHSQPATPTPLQSRTS TRHSQPATPTPLQSRTSIVQAAAGGVPGGG R H S S R T 1 1 0 0 0 2 0 0 1 0 1 0 0 0 3 2 2 0 0 0 0 0 13 0 1418.7266 Q9NR12 Q9NR12 246 258 PDLIM7 PDZ and LIM domain protein 7 yes yes 2 0.0005454 82.494 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6807700 0 6807700 6807700 0 6807700 0 0 0 5907 2064 6045 15633;15634 24360;24361 24360 2 HSSGCAFLSVK EGWEPDDDPIEEHKKHSSGCAFLSVKKQFE EHKKHSSGCAFLSVKKQFEELTLGEFLKLD K H S V K K 1 0 0 0 1 0 0 1 1 0 1 1 0 1 0 3 0 0 0 1 0 0 11 0 1191.5706 B7Z7B9;E7CU85;A0A0B4J1S3;O15392;A3E0Z5;H3BLT4;K7EMW2 B7Z7B9 80 90 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 2 2.8462E-12 138.08 1 2 1.1748 0.9698 5.6824 3 Median 0.78278 0.87986 NaN 1 0 Median 1.1817 0.97084 0.15108 2 0 Median 135500000 71773000 63727000 70150000 43402000 26747000 65350000 28370000 36980000 5908 498 6046 15635;15636;15637 24362;24363;24364;24365;24366 24365 5 HSSLITPLQAVAQR YRSYRHGDLPDIQIKHSSLITPLQAVAQRD KHSSLITPLQAVAQRDPIIAKQLFSSLFSG K H S Q R D 2 1 0 0 0 2 0 0 1 1 2 0 0 0 1 2 1 0 0 1 0 0 14 0 1519.8471 P78527 P78527 2787 2800 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.0694E-06 138.25 2 4 0.71131 0.78316 46.343 4 Linear 0.7135 0.80415 NaN 1 0 Median 0.41689 0.34222 9.7234 3 0 Plateau 91176000 65590000 25586000 60476000 42167000 18309000 30701000 23423000 7277500 5909 1665 6047 15638;15639;15640;15641;15642;15643 24367;24368;24369;24370;24371;24372;24373;24374;24375 24370 9 HSSTPNSSEFSR GKHHKKEKKKRKKEKHSSTPNSSEFSRK__ KEKHSSTPNSSEFSRK______________ K H S S R K 0 1 1 0 0 0 1 0 1 0 0 0 0 1 1 5 1 0 0 0 0 0 12 0 1334.5851 Q8N9Q2 Q8N9Q2 143 154 SREK1IP1 Protein SREK1IP1 yes yes 2 4.4362E-23 160.18 2 2 0.80086 0.85401 11.98 4 Linear 0.7613 0.81259 11.675 2 0 Median 0.81618 0.68545 2.1661 2 0 Median 69394000 37496000 31898000 58639000 31685000 26954000 10755000 5811300 4943700 5910 1915 6048 15644;15645;15646;15647 24376;24377;24378;24379;24380;24381;24382 24378 7 HSTSPSLDSEYNEELNEDDSQSDEK AHLTPYSLQAIKASRHSTSPSLDSEYNEEL YNEELNEDDSQSDEKDQDAIETDAMIKKKT R H S E K D 0 0 2 4 0 1 5 0 1 0 2 1 0 0 1 6 1 0 1 0 0 0 25 0 2854.1537 P35251;H0Y9P8 P35251 1085 1109 RFC1 Replication factor C subunit 1 yes no 3 4.416E-12 62.193 1 0.4876 0.50296 NaN 1 Median 0.4876 0.50296 NaN 1 0 Median NaN NaN NaN 0 0 Median 11511000 6269500 5241400 11511000 6269500 5241400 0 0 0 5911 1542 6049 15648 24383;24384;24385 24384 3 HSVGVVIGR YGSRIGGGIDVPVPRHSVGVVIGRSGEMIK DVPVPRHSVGVVIGRSGEMIKKIQNDAGVR R H S G R S 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 3 0 0 9 0 922.53485 A0A087WTP3;Q92945;M0R0I5;B4DV73 A0A087WTP3 332 340 KHSRP Far upstream element-binding protein 2 yes no 2 0.0041134 77.072 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11916000 0 11916000 11916000 0 11916000 0 0 0 5912 403 6050 15649 24386 24386 1 HSVIPPAAR VAGLRLRPRKTIRGKHSVIPPAARSGRRPG KTIRGKHSVIPPAARSGRRPGKKPHSTRRS K H S A R S 2 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 1 0 0 9 0 946.53485 Q9UIG0 Q9UIG0 1292 1300 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 8.5498E-05 101.28 2 2 32.065 27.569 NaN 1 Median NaN NaN NaN 0 0 Median 32.065 27.569 NaN 1 0 Median 72683000 358890 72324000 59131000 0 59131000 13552000 358890 13193000 5913 2103 6051 15650;15651;15652;15653 24387;24388;24389;24390;24391 24387 5 HTAAPTDPADGPV FGYDAYVTFPVRQPRHTAAPTDPADGPV__ PRHTAAPTDPADGPV_______________ R H T P V - 3 0 0 2 0 0 0 1 1 0 0 0 0 0 3 0 2 0 0 1 0 0 13 0 1247.5782 A0A024QYW3;Q04941 A0A024QYW3 140 152 PLP2 Proteolipid protein 2 yes no 2 6.5398E-09 109.71 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23302000 0 0 23302000 0 0 0 0 0 5914 7 6052 15654;15655 24392;24393 24393 2 HTASINDLER PGNVLTSTAVKDQNKHTASINDLERETQPS KDQNKHTASINDLERETQPSYDIDNFDIDD K H T E R E 1 1 1 1 0 0 1 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1154.568 B2RAN0;P54132;H0YNU5;B7ZKN7;B7Z2X2 B2RAN0 536 545 BLM Bloom syndrome protein yes no 2 0.035161 40.725 1 0.42557 0.47419 NaN 1 Median 0.42557 0.47419 NaN 1 0 Median NaN NaN NaN 0 0 Median 43817000 26327000 17490000 43817000 26327000 17490000 0 0 0 5915 873 6053 15656 24394 24394 1 HTDPQISGPLADLFR DPSTWSVDEVIQFMKHTDPQISGPLADLFR HTDPQISGPLADLFRQHEIDGKALFLLKSD K H T F R Q 1 1 0 2 0 1 0 1 1 1 2 0 0 1 2 1 1 0 0 0 0 0 15 0 1665.8475 Q9UQR0 Q9UQR0 642 656 SCML2 Sex comb on midleg-like protein 2 yes yes 3 0.036652 28.032 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1127600 1127600 0 0 0 0 1127600 1127600 0 5916 2118 6054 15657 24395 24395 1 HTDTDVLEACSK HLDALLRQIRNIVEKHTDTDVLEACSKTYH VEKHTDTDVLEACSKTYHALCNEEFTIFNR K H T S K T 1 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 2 0 0 1 0 0 12 0 1374.6085 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;Q6AI02;B4DQ46 B2R8Y6 554 565 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2;DKFZp686P168 Cohesin subunit SA-2 yes no 2 0.0082285 59.265 2 1 0.97855 0.89544 13.454 2 Median 0.98882 0.98481 NaN 1 0 Median 0.9684 0.81418 NaN 1 0 Median 9552300 4491300 5061000 7958200 3708600 4249500 1594100 782650 811460 5917 863 6055 15658;15659;15660 24396;24397;24398 24397 3 HTDVQFYTEVGEITTDLGK LHFHLKNAIMFGKKRHTDVQFYTEVGEITT QFYTEVGEITTDLGKHQHMHDRDDLYAEQM R H T G K H 0 0 0 2 0 1 2 2 1 1 1 1 0 1 0 0 4 0 1 2 0 0 19 0 2152.0324 Q9Y5B9 Q9Y5B9 735 753 SUPT16H FACT complex subunit SPT16 yes yes 2;3 2.1155E-07 78.708 3 0.51996 0.52617 NaN 1 Median 0.51996 0.52617 NaN 1 0 Median NaN NaN NaN 0 0 Median 49366000 14633000 34733000 49366000 14633000 34733000 0 0 0 5918 2148 6056 15661;15662;15663 24399;24400;24401;24402;24403 24401 5 HTEMITTLK DELASLQVTMQQAQKHTEMITTLKKIRRFK MQQAQKHTEMITTLKKIRRFKVSQVIMEKS K H T L K K 0 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 3 0 0 0 0 0 9 0 1072.5587 O75475 O75475 393 401 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.00089179 80.165 1 1.1762 1.1953 NaN 1 Median 1.1762 1.1953 NaN 1 0 Median NaN NaN NaN 0 0 Median 12672000 5291200 7381000 12672000 5291200 7381000 0 0 0 5919 1405 6057 15664 24404 24404 1083 1 HTGPNSPDTANDGFVR EVFKSNNVEMDWVLKHTGPNSPDTANDGFV TGPNSPDTANDGFVRLRGLPFGCSKEEIVQ K H T V R L 1 1 2 2 0 0 0 2 1 0 0 0 0 1 2 1 2 0 0 1 0 0 16 0 1683.7601 E9PCY7;G8JLB6;P31943;D6RIU0;D6RBM0;E7EQJ0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E5RGV0;E5RGH4;H0YAQ2;P55795 E9PCY7 99 114 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 7.9646E-26 139.78 4 4 1.347 1.2812 38.071 8 Median 1.6635 1.8032 5.5676 4 0 Median 1.0921 0.90378 1.8556 4 0 Median 245160000 94528000 150630000 211310000 78815000 132500000 33849000 15713000 18136000 5920 1231;1617 6058 15665;15666;15667;15668;15669;15670;15671;15672 24405;24406;24407;24408;24409;24410;24411;24412;24413;24414;24415;24416;24417;24418;24419 24407 15 HTLNPEETSSVVR IPHHAPVLLAWALLRHTLNPEETSSVVRKI LRHTLNPEETSSVVRKIGGTAIQLNVFQYL R H T V R K 0 1 1 0 0 0 2 0 1 0 1 0 0 0 1 2 2 0 0 2 0 0 13 0 1467.7318 Q5SRE5 Q5SRE5 331 343 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.024959 45.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3027700 3027700 0 3027700 3027700 0 0 0 0 5921 1816 6059 15673 24420 24420 1 HTLNQIDSVK AAVDYINKHLPRGYKHTLNQIDSVKVWPRR PRGYKHTLNQIDSVKVWPRRPTGEVYDIEI K H T V K V 0 0 1 1 0 1 0 0 1 1 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1153.6091 CON__P12763 CON__P12763 58 67 yes yes 2 1.352E-64 201.84 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77991000 77991000 0 77991000 77991000 0 0 0 0 + 5922 1160 6060 15674;15675 24421;24422 24422 2 HTLSIGDMVTGTVK DEEVDPALTVGTIKKHTLSIGDMVTGTVKS KHTLSIGDMVTGTVKSIKPTHVVVTLEDGI K H T V K S 0 0 0 1 0 0 0 2 1 1 1 1 1 0 0 1 3 0 0 2 0 0 14 0 1457.7548 Q14690;B4DH82 Q14690 1031 1044 PDCD11 Protein RRP5 homolog yes no 2 7.1538E-70 193.04 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11820000 0 11820000 11820000 0 11820000 0 0 0 5923 1741 6061 15676;15677;15678;15679;15680 24423;24424;24425;24426;24427 24426 1580 5 HTLTQIK NNPRSVTLLIKGPNKHTLTQIKDAVRDGLR LLIKGPNKHTLTQIKDAVRDGLRAVKNAID K H T I K D 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 839.4865 Q59ET3;B2R9K8;A0A024RDL1;P40227;A1JUI8;B4DPJ8;B4DN39 Q59ET3 380 386 CCT6A T-complex protein 1 subunit zeta yes no 2 0.016694 97.798 1 2.2489 2.2875 NaN 1 Median 2.2489 2.2875 NaN 1 0 Median NaN NaN NaN 0 0 Median 13957000 4255600 9701300 13957000 4255600 9701300 0 0 0 5924 389 6062 15681 24428 24428 1 HTLVEADIGIQAER DYGKHLLGVEDLLQKHTLVEADIGIQAERV KHTLVEADIGIQAERVRGVNASAQKFATDG K H T E R V 2 1 0 1 0 1 2 1 1 2 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1550.8053 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1 D6W5C0 484 497 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.025346 18.138 1 4.1026 3.599 NaN 1 Median NaN NaN NaN 0 0 Median 4.1026 3.599 NaN 1 0 Median 1694200 516090 1178100 0 0 0 1694200 516090 1178100 5925 415 6063 15682 24429 24429 1 HTVDVQLPR AVFTPKQTLTIPAPRHTVDVQLPREDNPEE TIPAPRHTVDVQLPREDNPEEPSKEITSHE R H T P R E 0 1 0 1 0 1 0 0 1 0 1 0 0 0 1 0 1 0 0 2 0 0 9 0 1063.5774 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 525 533 C10orf12 yes no 2 0.020683 50.04 1 1.3063 1.3482 NaN 1 Median 1.3063 1.3482 NaN 1 0 Median NaN NaN NaN 0 0 Median 21537000 10345000 11192000 21537000 10345000 11192000 0 0 0 5926 630 6064 15683 24430 24430 1 HTVPCMPPAK TAEKNASSPEKAKGRHTVPCMPPAKQKFLK KAKGRHTVPCMPPAKQKFLKSTEEQELEKS R H T A K Q 1 0 0 0 1 0 0 0 1 0 0 1 1 0 3 0 1 0 0 1 0 0 10 0 1136.5471 Q643R0;Q9ULW0;B3KM90 Q643R0 194 203 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.00019128 87.696 2 0.88088 0.91293 1.1717 2 Median 0.88088 0.91293 1.1717 2 0 Median NaN NaN NaN 0 0 Median 21562000 11166000 10396000 21562000 11166000 10396000 0 0 0 5927 1837 6065 15684;15685 24431;24432;24433 24431 1692 3 HVAAGTQQPYTDGVR RLVQLLVKAHQDAQRHVAAGTQQPYTDGVR HVAAGTQQPYTDGVRMEEIVEGCTGALHIL R H V V R M 2 1 0 1 0 2 0 2 1 0 0 0 0 0 1 0 2 0 1 2 0 0 15 0 1598.7801 A0A0S2Z487;A0A024R1X8;P14923;A0A0S2Z495 A0A0S2Z487 541 555 JUP Junction plakoglobin yes no 2 4.181E-23 138.24 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13141000 13141000 0 13141000 13141000 0 0 0 0 5928 94 6066 15686;15687 24434;24435 24435 2 HVDLLEVAQETDGFSGSDLK EAILKLILKNENVDRHVDLLEVAQETDGFS EVAQETDGFSGSDLKEMCRDAALLCVREYV R H V L K E 1 0 0 3 0 1 2 2 1 0 3 1 0 1 0 2 1 0 0 2 0 0 20 0 2159.0382 Q8NBU5;B4E2J1 Q8NBU5 281 300 ATAD1 ATPase family AAA domain-containing protein 1 yes no 3 1.6857E-06 58.997 2 2.3188 2.4016 NaN 1 Median 2.3188 2.4016 NaN 1 0 Median NaN NaN NaN 0 0 Median 12665000 4011000 8653700 12665000 4011000 8653700 0 0 0 5929 1920 6067 15688;15689 24436;24437 24436 2 HVDYVADQIVTK QISFVNSIATSKGGRHVDYVADQIVTKLVD GGRHVDYVADQIVTKLVDVVKKKNKGGVAV R H V T K L 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 0 1 0 1 3 0 0 12 0 1386.7143 P11388 P11388 325 336 TOP2A DNA topoisomerase 2-alpha yes yes 2 8.0215E-104 244.74 5 4 1.1446 0.92122 11.61 5 Median 0.75851 0.90622 2.3208 2 0 Median 1.2843 1.1102 12.957 3 0 Plateau 3290800000 1819000000 1471800000 2992400000 1689100000 1303200000 298470000 129890000 168580000 5930 1471 6068 15690;15691;15692;15693;15694;15695;15696;15697;15698 24438;24439;24440;24441;24442;24443;24444;24445;24446;24447;24448;24449;24450;24451;24452;24453;24454;24455;24456;24457;24458;24459;24460;24461;24462;24463;24464;24465;24466;24467;24468;24469;24470;24471;24472;24473 24446 36 HVDYVVDQVVGK QISFVNSIATTKGGRHVDYVVDQVVGKLIE GGRHVDYVVDQVVGKLIEVVKKKNKAGVSV R H V G K L 0 0 0 2 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 5 0 0 12 0 1356.7038 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 318 329 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 2.7722E-18 147.62 1 0.54287 0.58446 NaN 1 Median 0.54287 0.58446 NaN 1 0 Median NaN NaN NaN 0 0 Median 38240000 23537000 14703000 38240000 23537000 14703000 0 0 0 5931 1679 6069 15699 24474 24474 1 HVEFDFLIK NIINKLLKDKNEFHKHVEFDFLIKGQFLRM KNEFHKHVEFDFLIKGQFLRMPLDKHMEME K H V I K G 0 0 0 1 0 0 1 0 1 1 1 1 0 2 0 0 0 0 0 1 0 0 9 0 1146.6073 Q53T99;Q9GZL7 Q53T99 50 58 WDR12 Ribosome biogenesis protein WDR12 yes no 2 9.6685E-06 127.56 2 2 1.0765 1.1043 7.2498 4 Linear 0.9718 1.0739 4.4907 2 0 Median 1.1887 0.95784 2.6065 2 0 Median 169850000 84729000 85118000 127620000 64655000 62962000 42230000 20074000 22156000 5932 1792 6070 15700;15701;15702;15703 24475;24476;24477;24478;24479;24480;24481;24482;24483;24484 24476 10 HVENYLK KLNSIGNYYKPWFFKHVENYLKTNREGLEY YYKPWFFKHVENYLKTNREGLEYIPLRHYY K H V L K T 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 901.46577 Q3LIE7;B7ZAV4;Q15392 Q3LIE7 218 224 Nbla03646;DHCR24 Delta(24)-sterol reductase yes no 2 0.032788 77.923 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10005000 0 10005000 10005000 0 10005000 0 0 0 5933 1110 6071 15704 24485 24485 1 HVFDMKPK QKKMNRLGKKGEADRHVFDMKPKHLLSGKR KKGEADRHVFDMKPKHLLSGKRKAGKKDRR R H V P K H 0 0 0 1 0 0 0 0 1 0 0 2 1 1 1 0 0 0 0 1 0 0 8 1 1000.5164 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 610 617 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0073441 77.674 1 1.4632 1.6671 NaN 1 Median 1.4632 1.6671 NaN 1 0 Median NaN NaN NaN 0 0 Median 7763800 3604300 4159500 7763800 3604300 4159500 0 0 0 5934 1183 6072 15705 24486 24486 895 1 HVFFFDTK SELHLLDFQGKQQNKHVFFFDTKKEVEQFD QGKQQNKHVFFFDTKKEVEQFDVATHLQTA K H V T K K 0 0 0 1 0 0 0 0 1 0 0 1 0 3 0 0 1 0 0 1 0 0 8 0 1039.5127 Q9Y3A2 Q9Y3A2 136 143 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.00010195 122.13 1 2 0.91171 0.73325 0.86093 2 Median NaN NaN NaN 0 0 Median 0.91171 0.73325 0.86093 2 0 Median 11173000 6055000 5118400 0 0 0 11173000 6055000 5118400 5935 2132 6073 15706;15707;15708 24487;24488;24489;24490 24487 4 HVFGQAVK ______________________________ VRQSKFRHVFGQAVKNDQCYDDIRVSRVTW R H V V K N 1 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 884.48684 Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B4DMH3;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7 Q53G58 12 19 CORO1C Coronin;Coronin-1C yes no 2 0.027557 60.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7862700 0 7862700 0 0 0 7862700 0 7862700 5936 340 6074 15709 24491 24491 1 HVGNQQYNVTYVVK GVHGPTTPCEEVSMKHVGNQQYNVTYVVKE KHVGNQQYNVTYVVKERGDYVLAVKWGEEH K H V V K E 0 0 2 0 0 2 0 1 1 0 0 1 0 0 0 0 1 0 2 4 0 0 14 0 1647.8369 O75369;Q68CT4;E7EN95;A0A0A0MT44 O75369 2563 2576 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.00018167 85.963 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8617300 0 8617300 8617300 0 8617300 0 0 0 5937 1402 6075 15710 24492 24492 1 HVIADQEVMETNR PEEVMDVLEMVENVKHVIADQEVMETNRVE VKHVIADQEVMETNRVESVEPSENEASKEL K H V N R V 1 1 1 1 0 1 2 0 1 1 0 0 1 0 0 0 1 0 0 2 0 0 13 0 1540.7304 Q9H307;A8K964;B4DTD4;B4E392 Q9H307 398 410 PNN Pinin yes no 2 4.5434E-05 93.096 1 1.0521 1.0618 NaN 1 Median 1.0521 1.0618 NaN 1 0 Median NaN NaN NaN 0 0 Median 5869800 2947000 2922800 5869800 2947000 2922800 0 0 0 5938 2028 6076 15711 24493 24493 1868 1 HVINFDLPSDIEEYVHR ATAVAARGLDISNVKHVINFDLPSDIEEYV INFDLPSDIEEYVHRIGRTGRVGNLGLATS K H V H R I 0 1 1 2 0 0 2 0 2 2 1 0 0 1 1 1 0 0 1 2 0 0 17 0 2082.0171 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4E132;A0A0J9YVQ7 A0A0D9SFB3 512 528 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 3 0.00045664 45.704 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6368400 6368400 0 0 0 0 6368400 6368400 0 5939 522 6077 15712;15713 24494;24495 24494 2 HVIPVSSSDFNNK PNDSGAKIASNPLERHVIPVSSSDFNNKHL ERHVIPVSSSDFNNKHLLEPLCSDPLKDTN R H V N K H 0 0 2 1 0 0 0 0 1 1 0 1 0 1 1 3 0 0 0 2 0 0 13 0 1442.7154 A0A024R363;A0A087X0F1;Q9UK61 A0A024R363 682 694 C3orf63;FAM208A Protein FAM208A no no 2 0.03566 43.282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5940 129;2105 6078 15714 24496 24496 1 HVLTGSADNSCR HTGAVWCVDADWDTKHVLTGSADNSCRLWD DTKHVLTGSADNSCRLWDCETGKQLALLKT K H V C R L 1 1 1 1 1 0 0 1 1 0 1 0 0 0 0 2 1 0 0 1 0 0 12 0 1315.5939 Q5U0F4;Q53HU7;Q13347;Q5TFK1 Q5U0F4 66 77 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 2 0.00023262 85.377 1 1 1.3204 1.275 18.781 2 Median 1.3965 1.4561 NaN 1 0 Median 1.2484 1.1165 NaN 1 0 Median 14147000 5823700 8323300 13349000 5483100 7865700 798130 340600 457530 5941 1711 6079 15715;15716 24497;24498;24499 24497 3 HVLVTLGEK FDKEGNGTVMGAEIRHVLVTLGEKMTEEEV MGAEIRHVLVTLGEKMTEEEVEMLVAGHED R H V E K M 0 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 2 0 0 9 0 994.58113 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;F8VPF3;G3V1Y7;Q6IBG5;H0YI43;F8VZU9;F8W180;F8VXL3 F8W1R7 111 119 MYL6 Myosin light polypeptide 6 yes no 2 1.255E-08 149.19 1 1 1.6577 1.5941 14.973 2 Median 1.5638 1.7721 NaN 1 0 Median 1.7573 1.4339 NaN 1 0 Median 98313000 39938000 58375000 92132000 37552000 54581000 6181000 2386800 3794100 5942 1101 6080 15717;15718 24500;24501;24502;24503 24501 4 HVMQPYYK VGLNALEEWSIYIDRHVMQPYYKDILPCLD WSIYIDRHVMQPYYKDILPCLDGYLKTSAL R H V Y K D 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 2 1 0 0 8 0 1064.5113 P78527;B4DL41 P78527 783 790 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.002425 81.635 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7484200 0 7484200 7484200 0 7484200 0 0 0 5943 1665 6081 15719 24504 24504 1449 1 HVPGGGNVQIQNK YSHIQSKCGSKDNIKHVPGGGNVQIQNKKV IKHVPGGGNVQIQNKKVDISKVSSKCGSKA K H V N K K 0 0 2 0 0 2 0 3 1 1 0 1 0 0 1 0 0 0 0 2 0 0 13 0 1346.7055 H0Y2V1;A0A024R2V0;F8W9U4;Q86Y04;E7EVA0;P27816;B4DSQ1;Q8NDS5 H0Y2V1 344 356 MAP4;DKFZp547H1810 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.00014739 83.783 2 1.1987 1.2598 8.9872 2 Median 1.1987 1.2598 8.9872 2 0 Median NaN NaN NaN 0 0 Median 35641000 16008000 19633000 35641000 16008000 19633000 0 0 0 5944 123 6082 15720;15721 24505;24506;24507;24508 24508 4 HVPPLTEEQLNR YEEDWEVFDPYYFIKHVPPLTEEQLNRKPA FIKHVPPLTEEQLNRKPALPLKTRSTPEFS K H V N R K 0 1 1 0 0 1 2 0 1 0 2 0 0 0 2 0 1 0 0 1 0 0 12 0 1431.747 A0A024R5Q8;Q05D32;H0YMB4 A0A024R5Q8 263 274 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.00058999 68.735 1 1.1488 1.1632 NaN 1 Median 1.1488 1.1632 NaN 1 0 Median NaN NaN NaN 0 0 Median 17982000 8201300 9781100 17982000 8201300 9781100 0 0 0 5945 187 6083 15722 24509 24509 1 HVQGILR ______________________________ SLKLNGGRHVQGILRGFDPFMNLVIDECVE R H V L R G 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 821.48717 Q49AN9;F5H013;P62308;A8MWD9;C9JVQ0 Q49AN9 14 20 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 0.0053001 132.01 2 0.80463 0.91705 9.7859 2 Median 0.80463 0.91705 9.7859 2 0 Median NaN NaN NaN 0 0 Median 226310000 113580000 112730000 226310000 113580000 112730000 0 0 0 5946 798 6084 15723;15724 24510;24511;24512 24512 3 HVQLAFFPPGTVHPLER AGRLAAQSLDTSGLRHVQLAFFPPGTVHPL QLAFFPPGTVHPLERGVVQQVKGHYRQAML R H V E R G 1 1 0 0 0 1 1 1 2 0 2 0 0 2 3 0 1 0 0 2 0 0 17 0 1944.037 P07199 P07199 311 327 CENPB Major centromere autoantigen B yes yes 3;4 1.5817E-05 74.428 3 1.7527 1.4472 4.914 2 Median NaN NaN NaN 0 0 Median 1.7527 1.4472 4.914 2 0 Median 30024000 6655200 23369000 0 0 0 30024000 6655200 23369000 5947 1450 6085 15725;15726;15727 24513;24514;24515;24516 24516 4 HVQLVMEAIGK IKVAVTVMDVAHLAKHVQLVMEAIGKLSDD HLAKHVQLVMEAIGKLSDDMRRHFRMKLRN K H V G K L 1 0 0 0 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 2 0 0 11 0 1223.6696 B3KMR5;Q5JTH9;B3KY97 B3KMR5 981 991 RRP12 RRP12-like protein yes no 2 5.7846E-09 108.9 3 2.7694 2.999 NaN 1 Median 2.7694 2.999 NaN 1 0 Median NaN NaN NaN 0 0 Median 26443000 10676000 15768000 26443000 10676000 15768000 0 0 0 5948 907 6086 15728;15729;15730 24517;24518;24519 24517 733 3 HVSPAGAAVGIPLSEDEAK ELKEALGIPAAASFKHVSPAGAAVGIPLSE AGAAVGIPLSEDEAKVCMVYDLYKTLTPIS K H V A K V 4 0 0 1 0 0 2 2 1 1 1 1 0 0 2 2 0 0 0 2 0 0 19 0 1846.9425 V9HWH7;B2R7P8;P31939;B4DP06 V9HWH7 267 285 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 3 0.00011382 42.716 2 3.116 3.1869 NaN 1 Median 3.116 3.1869 NaN 1 0 Median NaN NaN NaN 0 0 Median 22769000 4591000 18178000 22769000 4591000 18178000 0 0 0 5949 852 6087 15731;15732 24520;24521 24521 2 HVTNPAFTK LVVQLLQFQEDAFGKHVTNPAFTKLPAKCF EDAFGKHVTNPAFTKLPAKCFMDFKAGGAL K H V T K L 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 2 0 0 1 0 0 9 0 1013.5294 Q58EY4;Q92922;Q05CR1;Q05BW5;F8WE13 Q58EY4 95 103 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 5.4386E-18 173.75 2 2 1.8573 1.469 25.032 3 Median 0.87754 0.96735 NaN 1 0 Median 1.8657 1.4912 2.1228 2 0 Median 83934000 25524000 58410000 75419000 22496000 52923000 8515500 3027900 5487600 5950 1798 6088 15733;15734;15735;15736 24522;24523;24524;24525;24526;24527 24524 6 HVTTAEGTPGTTDQEGPPPDGPPEK LPSRPHAPCPPAPRKHVTTAEGTPGTTDQE TTDQEGPPPDGPPEKRITATMDDMLSTRSS K H V E K R 1 0 0 2 0 1 3 4 1 0 0 1 0 0 6 0 5 0 0 1 0 0 25 0 2514.151 A0A0S2Q0B1;O14497;H0Y488;A0A1B0GTU5;Q96T01;Q96SM7;Q8NC65 A0A0S2Q0B1 1881 1905 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.057935 8.7274 1 1.9833 1.678 NaN 1 Median NaN NaN NaN 0 0 Median 1.9833 1.678 NaN 1 0 Median 1465100 545510 919600 0 0 0 1465100 545510 919600 5951 544 6089 15737 24528 24528 1 HVVAVVK HSKPGSVPLVSEKKKHVVAVVK________ PLVSEKKKHVVAVVK_______________ K H V V K - 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 4 0 0 7 0 750.47521 A0A087WT20;Q9NV06 A0A087WT20 591 597 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.010036 112.27 2 2 1.1499 1.0848 5.3721 4 Median 0.93601 1.0409 0.64773 2 0 Median 1.405 1.1401 1.8231 2 0 Median 124030000 60869000 63162000 111070000 55225000 55846000 12960000 5643700 7315900 5952 402 6090 15738;15739;15740;15741 24529;24530;24531;24532;24533;24534;24535;24536 24530 8 HVVFGQVIK QFFITTVPTPHLDGKHVVFGQVIKGIGVAR PHLDGKHVVFGQVIKGIGVARILENVEVKG K H V I K G 0 0 0 0 0 1 0 1 1 1 0 1 0 1 0 0 0 0 0 3 0 0 9 0 1025.6022 Q6FGM6;E5KN59;E5KN55;Q08752 Q6FGM6 146 154 PPID Peptidyl-prolyl cis-trans isomerase D yes no 2 0.0016291 91.626 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5953 1206 6091 15742 24537 24537 1 HVVFIAQR QVRLVRELEKKFSGKHVVFIAQRRILPKPT EKKFSGKHVVFIAQRRILPKPTRKSRTKNK K H V Q R R 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 2 0 0 8 0 968.55558 P62081;B5MCP9 P62081 91 98 RPS7 40S ribosomal protein S7 yes no 2 0.0024037 100.07 2 2 0.88351 0.89767 19.686 4 Median 0.9077 1.0634 2.7147 2 0 Median 0.87424 0.75779 2.7151 2 0 Median 755890000 393650000 362240000 656650000 341370000 315280000 99241000 52278000 46963000 5954 1631 6092 15743;15744;15745;15746 24538;24539;24540;24541;24542;24543;24544 24540 7 HVVLPVDDDSDLNVVASFDR PMKSAPVMLTLSDSKHVVLPVDDDSDLNVV VDDDSDLNVVASFDRRGEYIYTGNAKGKIL K H V D R R 1 1 1 5 0 0 0 0 1 0 2 0 0 1 1 2 0 0 0 5 0 0 20 0 2211.0808 A0A024R9B5;B4DMM7;Q15291;B4DLF8 A0A024R9B5 142 161 RBBP5 Retinoblastoma-binding protein 5 yes no 3 2.9089E-05 44.238 1 1 1.078 1.0036 5.9 2 Median 0.93882 0.9626 NaN 1 0 Median 1.2379 1.0464 NaN 1 0 Median 17384000 8658700 8725300 14401000 7296200 7105100 2982700 1362500 1620200 5955 272 6093 15747;15748 24545;24546 24545 1 HVVPNEVVVQR SGLKYKKGGVASGFKHVVPNEVVVQRLFQV SGFKHVVPNEVVVQRLFQVKGRRVVRATEV K H V Q R L 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 5 0 0 11 0 1274.7095 Q5T0I0;B7Z4U6;B7Z992;A0A0A0MS51;B7Z9A0;B7Z6N2;A0A0A0MT01;CON__Q3SX14;P06396;Q5T0I1;A0A0U1RQL8;B7Z2X4;Q69YR8 Q5T0I0 127 137 GSN;DKFZp313L0718 Gelsolin yes no 2 0.032809 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13487000 13487000 0 13487000 13487000 0 0 0 0 + 5956 474 6094 15749 24547 24547 1 HWGGNVLGPK AIRTNYNDRYDEIRRHWGGNVLGPKSVARI DEIRRHWGGNVLGPKSVARIAKLEKAKAKE R H W P K S 0 0 1 0 0 0 0 3 1 0 1 1 0 0 1 0 0 1 0 1 0 0 10 0 1063.5563 P62424;Q9BY74;Q5T8U2 P62424 236 245 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 1.1859E-05 103.83 1 2 0.77605 0.68853 13.028 3 Median 0.70242 0.81646 NaN 1 0 Median 0.81242 0.65972 6.0444 2 0 Median 282060000 155840000 126220000 232990000 128990000 104000000 49078000 26854000 22224000 5957 1648 6095 15750;15751;15752 24548;24549;24550;24551;24552 24548 5 HWMLDK ARGPKKHLKRVAAPKHWMLDKLTGVFAPRP HLKRVAAPKHWMLDKLTGVFAPRPSTGPHK K H W D K L 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 6 0 828.39524 B2R491;P62701;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;B7Z1M6;Q53HI6 B2R491 17 22 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 0.031246 88.734 1 1 0.93776 0.87654 69.769 2 Median 1.2978 1.4356 NaN 1 0 Median 0.67759 0.5352 NaN 1 0 Median 49173000 21492000 27682000 45247000 19293000 25954000 3925800 2198400 1727500 5958 824 6096 15753;15754 24553;24554 24553 653 2 HYVYGPLPQSFDK MFFIGFTALVIMWQKHYVYGPLPQSFDKEW QKHYVYGPLPQSFDKEWVAKQTKRMLDMKV K H Y D K E 0 0 0 1 0 1 0 1 1 0 1 1 0 1 2 1 0 0 2 1 0 0 13 0 1549.7565 P13073;H3BPG0 P13073 123 135 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2 0.00014673 102.06 1 1 1.1516 1.0585 2.0845 2 Median 1.0006 1.0431 NaN 1 0 Median 1.3253 1.0743 NaN 1 0 Median 21872000 10752000 11120000 19123000 9682800 9439900 2749200 1069100 1680000 5959 1477 6097 15755;15756 24555;24556;24557;24558;24559;24560;24561 24559 7 IAADILIK RAELSKNGEWYEVLKIAADILIKEEILSEN EWYEVLKIAADILIKEEILSENDQLSNQVV K I A I K E 2 0 0 1 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 8 0 855.54295 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 578 585 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0092533 75.109 2 2 1.1461 1.068 4.5999 4 Median 0.99515 1.1202 4.7344 2 0 Median 1.3101 1.0508 0.28798 2 0 Median 205920000 100660000 105260000 184650000 91584000 93065000 21273000 9078400 12195000 5960 897 6098 15757;15758;15759;15760 24562;24563;24564;24565;24566 24563 5 IAALQAFADQLIAAGHYAK KHEDFDKAINVQEEKIAALQAFADQLIAAG QAFADQLIAAGHYAKGDISSRRNEVLDRWR K I A A K G 7 0 0 1 0 2 0 1 1 2 2 1 0 1 0 0 0 0 1 0 0 0 19 0 1971.0578 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1481 1499 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 2.0052E-06 78.234 2 1 1.5998 1.6925 8.0686 2 Median 1.5998 1.6925 8.0686 2 0 Median NaN NaN NaN 0 0 Median 50298000 14875000 35423000 39294000 14875000 24420000 11003000 0 11003000 5961 523 6099 15761;15762;15763 24567;24568;24569 24567 3 IAAPFR ILVTDVNNFIENIEKIAAPFRSSYW_____ NNFIENIEKIAAPFRSSYW___________ K I A F R S 2 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 6 0 673.39115 Q5VWN6 Q5VWN6 2421 2426 FAM208B Protein FAM208B yes yes 2 0.040268 89.775 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5962 1833 6100 15764 24570 24570 1 IAATGVVLDLDK FLAIQSVSGIMPDFRIAATGVVLDLDKSIK DFRIAATGVVLDLDKSIKIVKKLKLTGFPY R I A D K S 2 0 0 2 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 2 0 0 12 0 1213.6918 Q14692 Q14692 1008 1019 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 1.8025E-22 150.94 2 2 1.2201 1.1511 4.156 4 Median 0.98704 1.1099 3.9858 2 0 Median 1.4787 1.1753 1.7737 2 0 Median 217390000 107370000 110020000 185510000 94130000 91382000 31879000 13241000 18638000 5963 1742 6101 15765;15766;15767;15768 24571;24572;24573;24574;24575;24576;24577 24573 6 IAAYLQSDQFCK PNLKAFMCRFEALEKIAAYLQSDQFCKMPI LEKIAAYLQSDQFCKMPINNKMAQWGNKPV K I A C K M 2 0 0 1 1 2 0 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 12 0 1442.6864 Q6FGJ9;Q59EJ5;P21266;B4E2J2 Q6FGJ9 198 209 GSTM3 Glutathione S-transferase Mu 3 yes no 2 1.6063E-22 152.28 3 2 2.2691 2.0943 40.806 4 Median 2.9076 2.9927 1.1381 2 0 Median 1.8335 1.4762 0.11995 2 0 Median 72111000 18987000 53124000 61906000 15171000 46735000 10205000 3815400 6389300 5964 1503 6102 15769;15770;15771;15772;15773 24578;24579;24580;24581;24582;24583;24584;24585 24578 8 IACEEEFSDSEEEGEGGR DDPDKRISICSSDKRIACEEEFSDSEEEGE EEEFSDSEEEGEGGRKNSSNFKKAKRVKTE R I A G R K 1 1 0 1 1 0 7 3 0 1 0 0 0 1 0 2 0 0 0 0 0 0 18 0 2028.7855 Q6IT96;Q13547;B5BU61;B4DRG0;Q5HYD4 Q6IT96 414 431 HDAC1;DKFZp686H12203 Histone deacetylase;Histone deacetylase 1 yes no 2 2.065E-09 88.087 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3975700 0 3975700 3975700 0 3975700 0 0 0 5965 1715 6103 15774 24586;24587 24586 2 IADFGWSVHAPSLR IKPENLLLGLKGELKIADFGWSVHAPSLRR KIADFGWSVHAPSLRRKTMCGTLDYLPPEM K I A L R R 2 1 0 1 0 0 0 1 1 1 1 0 0 1 1 2 0 1 0 1 0 0 14 0 1554.7943 B2RC06;J3KT86;Q96GD4;J3QLN8 Q96GD4 216 229 AURKB Aurora kinase B no no 2;3 3.5019E-05 82.908 3 3 1.3752 1.2816 30.81 6 Median 0.9174 1.0514 2.218 3 0 Median 2.2261 1.9156 12.639 3 0 Median 431020000 203520000 227500000 325770000 169590000 156170000 105250000 33930000 71324000 5966 881;1967 6104 15775;15776;15777;15778;15779;15780 24588;24589;24590;24591;24592;24593;24594;24595 24589 8 IADFGWSVHAPSSR IKPENLLLGSAGELKIADFGWSVHAPSSRR KIADFGWSVHAPSSRRTTLCGTLDYLPPEM K I A S R R 2 1 0 1 0 0 0 1 1 1 0 0 0 1 1 3 0 1 0 1 0 0 14 0 1528.7423 O14965;B4DX16;A3KFJ0 O14965 272 285 AURKA Aurora kinase A yes no 3 0.00019041 48.112 1 2 1.1294 0.97705 5.6274 3 Median 0.97146 0.95632 NaN 1 0 Median 1.1582 1.0195 6.0079 2 0 Median 19400000 9323600 10076000 14497000 6937000 7559800 4903300 2386600 2516600 5967 1369 6105 15781;15782;15783 24596;24597;24598 24596 3 IADGYEQAAR EEAEQLLDRGIHPIRIADGYEQAARVAIEH IHPIRIADGYEQAARVAIEHLDKISDSVLV R I A A R V 3 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1092.52 B4DE30;E7ENZ3;B4DYC8;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;B4DX08 B4DE30 58 67 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 2 1.4773E-05 101.65 1 1 4.2268 4.3827 NaN 1 Median 4.2268 4.3827 NaN 1 0 Median NaN NaN NaN 0 0 Median 14817000 4070800 10747000 13690000 4070800 9619200 1127400 0 1127400 5968 960 6106 15784;15785 24599;24600 24599 2 IADQFLGAMYTLPR TVHGALLSGLREAGRIADQFLGAMYTLPRQ RIADQFLGAMYTLPRQATPGVPAQQSPSM_ R I A P R Q 2 1 0 1 0 1 0 1 0 1 2 0 1 1 1 0 1 0 1 0 0 0 14 0 1594.8177 A8K2R3;O60341;R4GMP9 A8K2R3 703 716 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.0017523 46.844 1 1.039 1.0634 NaN 1 Median 1.039 1.0634 NaN 1 0 Median NaN NaN NaN 0 0 Median 6628200 3316500 3311700 6628200 3316500 3311700 0 0 0 5969 711 6107 15786 24601;24602 24601 547 2 IADQLEELNK VELKKLKHLEKSVEKIADQLEELNKELTGI KSVEKIADQLEELNKELTGIQQGFLPKDLQ K I A N K E 1 0 1 1 0 1 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1171.6085 A0A0S2Z3K4;J3QTA2;Q99933;A0A0U1RR89;C9JYK5 A0A0S2Z3K4 172 181 BAG1 BAG family molecular chaperone regulator 1 yes no 2 1.0303E-05 103.7 2 1 0.6762 0.59975 50.813 2 Median 0.41906 0.41872 NaN 1 0 Median 1.0911 0.85904 NaN 1 0 Median 17496000 11265000 6230800 15212000 10329000 4883300 2283700 936220 1347500 5970 551 6108 15787;15788;15789 24603;24604;24605 24603 3 IAEEFEVELER PLDSLNTRLFLQGPKIAEEFEVELERGKTL QGPKIAEEFEVELERGKTLHIKALAVSDLN K I A E R G 1 1 0 0 0 0 5 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 11 0 1362.6667 A0A024R5C5;P11498;E9PS68 A0A024R5C5 1044 1054 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 0.00022191 91.855 1 1.1939 1.1975 NaN 1 Median 1.1939 1.1975 NaN 1 0 Median NaN NaN NaN 0 0 Median 17671000 10423000 7248600 17671000 10423000 7248600 0 0 0 5971 176 6109 15790 24606;24607 24607 2 IAEESNFPFIK LEGPPHSGKTALAAKIAEESNFPFIKICSP LAAKIAEESNFPFIKICSPDKMIGFSETAK K I A I K I 1 0 1 0 0 0 2 0 0 2 0 1 0 2 1 1 0 0 0 0 0 0 11 0 1293.6605 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;B4DGR3;Q96D47;D3DXJ4 I3L0N3 551 561 NSF Vesicle-fusing ATPase yes no 2 0.00034577 85.731 1 1.8754 1.9423 NaN 1 Median 1.8754 1.9423 NaN 1 0 Median NaN NaN NaN 0 0 Median 14747000 5171900 9575500 14747000 5171900 9575500 0 0 0 5972 1096 6110 15791 24608 24608 1 IAEFAFEYAR VVQSIKLITEGASKRIAEFAFEYARNNHRS GASKRIAEFAFEYARNNHRSNVTAVHKANI R I A A R N 3 1 0 0 0 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 10 0 1215.5924 H0YMU3;B4DJB4;H0YL72;B4DSY4;Q53GF8;P50213;B7Z9J8 H0YMU3 151 160 IDH3A Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2 5.0688E-05 101.11 2 1 1.4561 1.4226 49.387 2 Median 1.8655 2.0171 NaN 1 0 Median 1.1365 1.0032 NaN 1 0 Median 80301000 18717000 61583000 78692000 17712000 60980000 1609100 1005900 603120 5973 987 6111 15792;15793;15794 24609;24610;24611;24612 24610 4 IAEFTTNLTEEEEK QNCKLAKEKKLLEDRIAEFTTNLTEEEEKS RIAEFTTNLTEEEEKSKSLAKLKNKHEAMI R I A E K S 1 0 1 0 0 0 5 0 0 1 1 1 0 1 0 0 3 0 0 0 0 0 14 0 1652.7781 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;Q99529 A0A024R1N1 1001 1014 MYH9 Myosin-9 yes no 2 1.3095E-46 181.49 2 2 2.106 2.0645 7.231 4 Median 1.6912 1.9528 3.8513 2 0 Median 2.6278 2.1848 3.9882 2 0 Median 509590000 177320000 332270000 422820000 154510000 268320000 86765000 22817000 63948000 5974 81 6112 15795;15796;15797;15798 24613;24614;24615;24616;24617;24618;24619;24620;24621 24613 9 IAEGVNSLLQMAGLLAR LKLEFIKEIGYTHMKIAEGVNSLLQMAGLL EGVNSLLQMAGLLARLCQKTMAPVAS____ K I A A R L 3 1 1 0 0 1 1 2 0 1 4 0 1 0 0 1 0 0 0 1 0 0 17 0 1754.9713 Q75MT5;B5BUD2;P35250;A0A087WVY3 Q75MT5 293 309 RFC2 Replication factor C subunit 2 yes no 2 7.961E-06 77.593 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3343300 0 3343300 3343300 0 3343300 0 0 0 5975 1079 6113 15799 24622 24622 831 1 IAELSEDDQK NKPLIVVANKCDVKRIAELSEDDQKIFTDL CDVKRIAELSEDDQKIFTDLQSEGFPVIET R I A Q K I 1 0 0 2 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1146.5404 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 294 303 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 1.768E-13 150.36 1 2 1.4226 1.3429 0.93782 2 Median 1.1976 1.334 NaN 1 0 Median 1.69 1.3518 NaN 1 0 Median 64665000 24472000 40194000 51564000 21328000 30236000 13102000 3143800 9957700 5976 1183 6114 15800;15801;15802 24623;24624;24625;24626;24627 24624 5 IAEMEYSGANSIFLR KCSIPVLHSSAAMLKIAEMEYSGANSIFLR IAEMEYSGANSIFLRLLLDKKYALPYRVLD K I A L R L 2 1 1 0 0 0 2 1 0 2 1 0 1 1 0 2 0 0 1 0 0 0 15 0 1699.824 Q13895 Q13895 329 343 BYSL Bystin yes yes 2 9.8589E-12 106.67 2 1.5557 1.6698 NaN 1 Median 1.5557 1.6698 NaN 1 0 Median NaN NaN NaN 0 0 Median 36322000 9960100 26362000 36322000 9960100 26362000 0 0 0 5977 1724 6115 15803;15804 24628;24629;24630 24628 1561 3 IAEPSVCGR QVCAHTTRVEMDRGRIAEPSVCGRCHTTHS EMDRGRIAEPSVCGRCHTTHSMALIHNRSL R I A G R C 1 1 0 0 1 0 1 1 0 1 0 0 0 0 1 1 0 0 0 1 0 0 9 0 987.48076 B4DLA6;B3KMX0;A0A024R7U6;P33991 B4DLA6 282 290 MCM4 DNA replication licensing factor MCM4 yes no 2 0.013178 58.23 2 1.2913 1.2821 NaN 1 Median 1.2913 1.2821 NaN 1 0 Median NaN NaN NaN 0 0 Median 21789000 5679200 16110000 21789000 5679200 16110000 0 0 0 5978 235 6116 15805;15806 24631;24632;24633;24634 24634 4 IAFAITAIK HILRVLNTNIDGRRKIAFAITAIKGVGRRY IDGRRKIAFAITAIKGVGRRYAHVVLRKAD K I A I K G 3 0 0 0 0 0 0 0 0 3 0 1 0 1 0 0 1 0 0 0 0 0 9 0 946.58515 P62269;A0A0G2JQH2;Q5GGW2 P62269 26 34 RPS18 40S ribosomal protein S18 yes no 1;2 5.0151E-07 120.46 3 2 1.1067 1.074 30.567 4 Median 1.168 1.3771 1.7052 2 0 Median 1.0126 0.81382 5.7937 2 0 Median 845170000 396690000 448480000 801040000 373680000 427360000 44127000 23009000 21118000 5979 1639 6117 15807;15808;15809;15810;15811 24635;24636;24637;24638;24639;24640;24641;24642;24643;24644;24645 24641 11 IAFGGETDEATR LRHFKRILSLLEGQKIAFGGETDEATRYIA GQKIAFGGETDEATRYIAPTVLTDVDPKTK K I A T R Y 2 1 0 1 0 0 2 2 0 1 0 0 0 1 0 0 2 0 0 0 0 0 12 0 1265.5888 J3QRD1;Q59H65;P51648;Q68D64;J3QS00;I3L1M4 J3QRD1 300 311 ALDH3A2;DKFZp686E23276 Fatty aldehyde dehydrogenase yes no 2 0.0035994 65.5 3 1 1.4392 1.466 NaN 1 Median 1.4392 1.466 NaN 1 0 Median NaN NaN NaN 0 0 Median 44258000 28062000 16196000 43563000 27368000 16196000 694440 694440 0 5980 1338 6118 15812;15813;15814;15815 24646;24647;24648;24649 24648 3 IAFIMDESNVLDSGFLER DLRTVLRRSGCKNEKIAFIMDESNVLDSGF IMDESNVLDSGFLERMNTLLANGEVPGLFE K I A E R M 1 1 1 2 0 0 2 1 0 2 2 0 1 2 0 2 0 0 0 1 0 0 18 0 2054.9983 Q14204 Q14204 2990 3007 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0015509 52.555 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5981 1729 6119 15816 24650 24650 1564 1 IAFTEWIEPPK SVYNFEGEDYREKQKIAFTEWIEPPKRERK EKQKIAFTEWIEPPKRERKANYAVDAYFRE K I A P K R 1 0 0 0 0 0 2 0 0 2 0 1 0 1 2 0 1 1 0 0 0 0 11 0 1329.6969 O60264;B7ZAX9;B4DZC0 O60264 725 735 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 2.3128E-05 103.7 2 2 2.3563 2.3849 NaN 1 Median 2.3563 2.3849 NaN 1 0 Median NaN NaN NaN 0 0 Median 20005000 2496700 17509000 17007000 2496700 14510000 2998500 0 2998500 5982 1391 6120 15817;15818;15819;15820 24651;24652;24653;24654;24655 24653 5 IAFTEWIEPPKR SVYNFEGEDYREKQKIAFTEWIEPPKRERK KQKIAFTEWIEPPKRERKANYAVDAYFREA K I A K R E 1 1 0 0 0 0 2 0 0 2 0 1 0 1 2 0 1 1 0 0 0 0 12 1 1485.798 O60264;B7ZAX9;B4DZC0 O60264 725 736 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 3 0.0036367 43.544 1 2.3672 2.7396 NaN 1 Median 2.3672 2.7396 NaN 1 0 Median NaN NaN NaN 0 0 Median 33218000 10062000 23156000 33218000 10062000 23156000 0 0 0 5983 1391 6121 15821 24656 24656 1 IAGAGLLFVGGGIGGTILYAK RRYSTSGSSGLTTGKIAGAGLLFVGGGIGG LFVGGGIGGTILYAKWDSHFRESVEKTIPY K I A A K W 3 0 0 0 0 0 0 7 0 3 3 1 0 1 0 0 1 0 1 1 0 0 21 0 1947.1193 Q16891;B9A067;B4DQY2;B4DKR1;B4DT20;Q05DN3 Q16891 46 66 IMMT MICOS complex subunit MIC60 no no 2 8.0771E-22 120.84 1 1.1886 1.2913 NaN 1 Median 1.1886 1.2913 NaN 1 0 Median NaN NaN NaN 0 0 Median 46878000 20512000 26365000 46878000 20512000 26365000 0 0 0 5984 1774 6122 15822 24657 24657 1 IAGVGSLPLSGVEEK PPPSPQQMPPLEKARIAGVGSLPLSGVEEK IAGVGSLPLSGVEEKMFSLLKRAKVQLFKI R I A E K M 1 0 0 0 0 0 2 3 0 1 2 1 0 0 1 2 0 0 0 2 0 0 15 0 1454.7981 Q9UMN6 Q9UMN6 777 791 KMT2B Histone-lysine N-methyltransferase 2B yes yes 2 0.0063588 51.841 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5985 2113 6123 15823 24658 24658 1 IAGYVTHLMK CEEIAIIPSKKLRNKIAGYVTHLMKRIQRG KLRNKIAGYVTHLMKRIQRGPVRGISIKLQ K I A M K R 1 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 1 0 1 1 0 0 10 0 1131.6111 H0YN88;A0A075B716;P08708;A4D1Q6 H0YN88 50 59 RPS17;LOC392101 40S ribosomal protein S17 yes no 2 1.5021E-06 110.41 2 1.816 1.8818 0.96174 2 Median 1.816 1.8818 0.96174 2 0 Median NaN NaN NaN 0 0 Median 62514000 23074000 39441000 62514000 23074000 39441000 0 0 0 5986 396 6124 15824;15825 24659;24660;24661 24659 285 3 IAHIPLYFVNAQFPR FNKGALLSVGWSTGRIAHIPLYFVNAQFPR IAHIPLYFVNAQFPRFSPVLGRAQEPPAGG R I A P R F 2 1 1 0 0 1 0 0 1 2 1 0 0 2 2 0 0 0 1 1 0 0 15 0 1784.9726 B4DDU7;Q53HS1;Q9NRG9;F8VZ44 B4DDU7 446 460 AAAS Aladin yes no 3 0.032668 46.481 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5987 961 6125 15826 24662 24662 1 IAHLAQIEDDR TLPNYTKGSGDVLGKIAHLAQIEDDRAAMV VLGKIAHLAQIEDDRAAMVISWHLASDMDC K I A D R A 2 1 0 2 0 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1279.6521 A6NHR9;J3KTL8 A6NHR9 1726 1736 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0039827 38.634 2 0.96082 1.0004 1.2765 2 Median 0.96082 1.0004 1.2765 2 0 Median NaN NaN NaN 0 0 Median 54247000 25118000 29130000 54247000 25118000 29130000 0 0 0 5988 684 6126 15827;15828 24663;24664;24665 24663 2 IAILTCPFEPPKPK DFSHPQMPKKVEDAKIAILTCPFEPPKPKT KIAILTCPFEPPKPKTKHKLDVTSVEDYKA K I A P K T 1 0 0 0 1 0 1 0 0 2 1 2 0 1 4 0 1 0 0 0 0 0 14 1 1609.8902 B4DE30;E7ENZ3;B4DYC8;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;Q96GI1;B4DX08;B4DZY9 B4DE30 173 186 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 3 0.00017197 86.291 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9952300 0 9952300 9952300 0 9952300 0 0 0 5989 960 6127 15829 24666;24667 24666 2 IAIPGLAGAGNSVLLVSNLNPER LAIPSAAAAAAAAGRIAIPGLAGAGNSVLL AGNSVLLVSNLNPERVTPQSLFILFGVYGD R I A E R V 3 1 3 0 0 0 1 3 0 2 4 0 0 0 2 2 0 0 0 2 0 0 23 0 2274.2696 A6NLN1;A0A0U1RRM4;P26599;K7EK45 A6NLN1 322 344 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 1.5856E-08 64.565 2 2.4007 2.6382 0.59916 2 Median 2.4007 2.6382 0.59916 2 0 Median NaN NaN NaN 0 0 Median 96908000 29264000 67643000 96908000 29264000 67643000 0 0 0 5990 592 6128 15830;15831 24668;24669;24670 24670 3 IAIYELLFK ______________________________ MPKKNRIAIYELLFKEGVMVAKKDVHMPKH R I A F K E 1 0 0 0 0 0 1 0 0 2 2 1 0 1 0 0 0 0 1 0 0 0 9 0 1108.6532 P46783;Q59GE4;F6U211;S4R435 P46783 9 17 RPS10;RPS10-NUDT3 40S ribosomal protein S10 yes no 2 0.00092483 92.439 3 1.2349 1.3887 8.0433 3 Plateau 1.2349 1.3887 8.0433 3 0 Plateau NaN NaN NaN 0 0 Median 192490000 84445000 108040000 192490000 84445000 108040000 0 0 0 5991 1573 6129 15832;15833;15834 24671;24672;24673;24674;24675;24676;24677;24678 24672 8 IAIYLSK FMVINNDDTESAEMKIAIYLSKSGICSLHP DTESAEMKIAIYLSKSGICSLHPLLRGWEE K I A S K S 1 0 0 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 0 7 0 806.49019 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 621 627 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.027367 73.637 1 0.90749 1.0142 NaN 1 Median 0.90749 1.0142 NaN 1 0 Median NaN NaN NaN 0 0 Median 97315000 50043000 47272000 97315000 50043000 47272000 0 0 0 5992 897 6130 15835 24679 24679 1 IALALTAISLGTARPPPSMSAAGLAAR DHQRTSVPENHAQSRIALALTAISLGTARP ARPPPSMSAAGLAARMSQVPAPVPLMSLRT R I A A R M 8 2 0 0 0 0 0 2 0 2 4 0 1 0 3 3 2 0 0 0 0 0 27 1 2576.4472 A0A140VK53;Q9UQ35;O60382;A0AUK8 A0A140VK53 2181 2207 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 3 2.5249E-19 80.683 2 1.4307 1.5345 29.267 2 Median 1.4307 1.5345 29.267 2 0 Median NaN NaN NaN 0 0 Median 26424000 13582000 12841000 26424000 13582000 12841000 0 0 0 5993 619 6131 15836;15837 24680;24681 24681 472 2 IALGIPLPEIK ASKATGYPLAFIAAKIALGIPLPEIKNVVS IAAKIALGIPLPEIKNVVSGKTSACFEPSL K I A I K N 1 0 0 0 0 0 1 1 0 3 2 1 0 0 2 0 0 0 0 0 0 0 11 0 1162.7325 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209;Q5R207 Q5R210 741 751 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.0018904 64.04 2 2 1.3342 1.217 56.08 4 Median 1.9133 1.9378 5.6617 2 0 Median 0.88277 0.73897 10.428 2 0 Median 23038000 9252400 13786000 19958000 7725000 12233000 3080600 1527400 1553100 5994 148 6132 15838;15839;15840;15841 24682;24683;24684;24685;24686;24687 24686 6 IALLGGGK LQGLILNPIFRQNLRIALLGGGKAWSDDTS IFRQNLRIALLGGGKAWSDDTSQLGPDKHA R I A G K A 1 0 0 0 0 0 0 3 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 727.45922 B4DNU0;Q53HH3;Q92759 B4DNU0 126 133 GTF2H4 General transcription factor IIH subunit 4 yes no 2 0.013659 64.803 3 0.83062 0.82917 NaN 1 Median 0.83062 0.82917 NaN 1 0 Median NaN NaN NaN 0 0 Median 19544000 13284000 6260200 19544000 13284000 6260200 0 0 0 5995 1016 6133 15842;15843;15844 24688;24689;24690;24691;24692 24692 5 IALTDNALIAR ELIYKRGYGKINKKRIALTDNALIARSLGK NKKRIALTDNALIARSLGKYGIICMEDLIH R I A A R S 3 1 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1169.6768 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 178 188 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2 2.3866E-10 134.23 2 2 0.87019 0.82716 25.014 4 Median 0.95081 1.0602 11.685 2 0 Median 0.80499 0.69858 0.47295 2 0 Median 1083500000 562650000 520850000 942010000 487040000 454960000 141500000 75610000 65890000 5996 240 6134 15845;15846;15847;15848 24693;24694;24695;24696;24697;24698;24699;24700;24701;24702;24703 24695 11 IALYGLGSIPDER KIDISPVLLQKGSTKIALYGLGSIPDERLY TKIALYGLGSIPDERLYRMFVNKKVTMLRP K I A E R L 1 1 0 1 0 0 1 2 0 2 2 0 0 0 1 1 0 0 1 0 0 0 13 0 1402.7456 Q05D78;F8W7U8;A0A024R395;P49959;Q9BS79;F5GXT0 Q05D78 176 188 MRE11A Double-strand break repair protein MRE11A yes no 2 0.00032056 88.441 2 0.50663 0.50807 NaN 1 Median 0.50663 0.50807 NaN 1 0 Median NaN NaN NaN 0 0 Median 16168000 10719000 5448400 16168000 10719000 5448400 0 0 0 5997 131 6135 15849;15850 24704;24705;24706 24706 3 IANLAYVTK GTPAPGFSSMLYGMKIANLAYVTKTRVRFF MLYGMKIANLAYVTKTRVRFFRLDRWADVR K I A T K T 2 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 9 0 991.57023 B7Z700;Q5JR04;Q9HCE1;Q9H8T8 B7Z700 36 44 MOV10 Putative helicase MOV-10 yes no 2 0.019405 59.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6153700 0 6153700 6153700 0 6153700 0 0 0 5998 1102 6136 15851 24707 24707 1 IANLQTDLSDGLR FTRWCNEHLKCVSKRIANLQTDLSDGLRLI KRIANLQTDLSDGLRLIALLEVLSQKKMHR R I A L R L 1 1 1 2 0 1 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1414.7416 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 64 76 FLNA Filamin-A yes no 2 1.9071E-23 152.62 2 1.8623 1.9752 18.36 2 Median 1.8623 1.9752 18.36 2 0 Median NaN NaN NaN 0 0 Median 67892000 26227000 41666000 67892000 26227000 41666000 0 0 0 5999 1504 6137 15852;15853 24708;24709 24708 2 IANPDQLLTQDVEK LQAFTYYKMGNLDNRIANPDQLLTQDVEKF RIANPDQLLTQDVEKFCNSVVDLYSNLSKP R I A E K F 1 0 1 2 0 2 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 14 0 1582.8203 B4DL07;P28288;B4DZ22 B4DL07 206 219 ABCD3 ATP-binding cassette sub-family D member 3 yes no 2 0.02892 50.354 1 1 1.7778 1.4567 NaN 1 Median NaN NaN NaN 0 0 Median 1.7778 1.4567 NaN 1 0 Median 8838800 7429500 1409300 6386600 6386600 0 2452200 1042900 1409300 6000 994 6138 15854;15855 24710;24711 24711 2 IANPVEGSSGR ANINEIRQMSGAQIKIANPVEGSSGRQVTI AQIKIANPVEGSSGRQVTITGSAASISLAQ K I A G R Q 1 1 1 0 0 0 1 2 0 1 0 0 0 0 1 2 0 0 0 1 0 0 11 0 1085.5465 Q53SS8;Q15365 Q53SS8 315 325 PCBP1 Poly(rC)-binding protein 1 yes no 2 6.013E-08 115.82 2 2 1.3791 1.1524 32.491 3 Median 1.5851 1.8014 NaN 1 0 Median 1.2394 1.0504 13.104 2 0 Median 122770000 51650000 71119000 111210000 46096000 65115000 11558000 5554700 6003800 6001 1759 6139 15856;15857;15858;15859 24712;24713;24714;24715 24712 4 IANPVEGSTDR AKINEIRQMSGAQIKIANPVEGSTDRQVTI AQIKIANPVEGSTDRQVTITGSAASISLAQ K I A D R Q 1 1 1 1 0 0 1 1 0 1 0 0 0 0 1 1 1 0 0 1 0 0 11 0 1157.5677 H3BRU6;F8VZX2;B4DRD7;F8VRH0;Q15366;H3BSS4 Q15366 259 269 PCBP2 Poly(rC)-binding protein 2 no no 2 0.0012513 84.658 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 272510000 0 272510000 272510000 0 272510000 0 0 0 6002 1263;1760 6140 15860;15861 24716;24717 24716 2 IANQVAIQR PTVCAPYIPPQRLNRIANQVAIQRKKQFVE PQRLNRIANQVAIQRKKQFVERAHSYWLLK R I A Q R K 2 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 9 0 1011.5825 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41;B7Z926;Q59G93 A0A024R4W4 460 468 BRD1 Bromodomain-containing protein 1 yes no 2 2.1239E-05 117.16 2 1.1636 1.1583 NaN 1 Median 1.1636 1.1583 NaN 1 0 Median NaN NaN NaN 0 0 Median 15973000 5435900 10537000 15973000 5435900 10537000 0 0 0 6003 162 6141 15862;15863 24718;24719 24719 2 IANVTLIDLR GCNKLTDQTLIYLRRIANVTLIDLRGCKQI IYLRRIANVTLIDLRGCKQITRKACEHFIS R I A L R G 1 1 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1126.671 I3VM54;I3VM53;Q9Y2K7 I3VM54 1101 1110 KDM2A Lysine-specific demethylase 2A yes no 2 0.0055036 60.064 1 0.52371 0.44457 NaN 1 Median NaN NaN NaN 0 0 Median 0.52371 0.44457 NaN 1 0 Median 5180400 3008100 2172300 0 0 0 5180400 3008100 2172300 6004 1323 6142 15864 24720 24720 1 IANVVINQSANDSK SNDSTDGEPEEKRRKIANVVINQSANDSKV KIANVVINQSANDSKVLIDNIPDSSSLIEE K I A S K V 2 0 3 1 0 1 0 0 0 2 0 1 0 0 0 2 0 0 0 2 0 0 14 0 1471.7631 Q2M1V9;A0A0A0MTH9;O14981 Q2M1V9 249 262 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.00035162 85.813 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6005 488 6143 15865 24721 24721 1 IAPAEAPDAK QHIKQLSRFAGASIKIAPAEAPDAKVRMVI GASIKIAPAEAPDAKVRMVIITGPPEAQFK K I A A K V 4 0 0 1 0 0 1 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 10 0 981.51311 O00425 O00425 441 450 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.037291 47.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6006 1364 6144 15866 24722 24722 1 IAPELYHK FITYHNELDMNLYMRIAPELYHKMLVVGGI DMNLYMRIAPELYHKMLVVGGIDRVYEIGR R I A H K M 1 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 8 0 969.52837 Q15046;Q6ZTI3 Q15046 298 305 KARS Lysine--tRNA ligase yes no 2 0.017319 67.032 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6469700 0 6469700 6469700 0 6469700 0 0 0 6007 1749 6145 15867;15868 24723;24724 24723 2 IAPPEAPVTGYMFGK SRTTNFAGILSQGLRIAPPEAPVTGYMFGK IAPPEAPVTGYMFGKGIYFADMVSKSANYC R I A G K G 2 0 0 0 0 0 1 2 0 1 0 1 1 1 3 0 1 0 1 1 0 0 15 0 1576.796 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 879 893 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 2.1174E-05 85.845 4 2 0.86135 0.96289 27.563 6 Median 0.70099 0.76325 30.748 4 0 Median 1.2356 0.98288 5.3532 2 0 Median 394750000 217360000 177400000 357230000 201570000 155660000 37523000 15786000 21737000 6008 139 6146;6147 15869;15870;15871;15872;15873;15874 24725;24726;24727;24728;24729;24730;24731;24732;24733 24727 120 9 IAPPETPDSK QHIKQLSRFASASIKIAPPETPDSKVRMVI SASIKIAPPETPDSKVRMVIITGPPEAQFK K I A S K V 1 0 0 1 0 0 1 0 0 1 0 1 0 0 3 1 1 0 0 0 0 0 10 0 1053.5342 Q9NZI8;D3DTW3 Q9NZI8 441 450 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 0.00050608 71.451 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6009 2087 6148 15875;15876 24734;24735 24735 2 IAPQYYDMSNFPQCEAK YIRTCTDIKPEWLVKIAPQYYDMSNFPQCE PQYYDMSNFPQCEAKRQLDRIIAKLQSKEY K I A A K R 2 0 1 1 1 2 1 0 0 1 0 1 1 1 2 1 0 0 2 0 0 0 17 0 2060.8972 O43143;B4E0S6 O43143 761 777 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 3.3653E-05 70.622 2 1.5166 1.5459 1.6465 2 Median 1.5166 1.5459 1.6465 2 0 Median NaN NaN NaN 0 0 Median 26998000 9857400 17140000 26998000 9857400 17140000 0 0 0 6010 1379 6149 15877;15878 24736;24737;24738 24736 1045 3 IAPRPASGPIRPIVR RKIRRRKARQAKARRIAPRPASGPIRPIVR IAPRPASGPIRPIVRCTTVRYHTKVRAGRG R I A V R C 2 3 0 0 0 0 0 1 0 3 0 0 0 0 4 1 0 0 0 1 0 0 15 2 1598.9733 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 46 60 RPL13 60S ribosomal protein L13 yes no 4 0.00023764 56.482 2 0.95933 1.0099 14.682 2 Median 0.95933 1.0099 14.682 2 0 Median NaN NaN NaN 0 0 Median 180930000 85780000 95148000 180930000 85780000 95148000 0 0 0 6011 733 6150 15879;15880 24739;24740;24741;24742;24743 24739 5 IAPSFAVESIEDALK DRQLFSDKLNEINEKIAPSFAVESIEDALK IAPSFAVESIEDALKAADTIGYPVMIRSAY K I A L K A 3 0 0 1 0 0 2 0 0 2 1 1 0 1 1 2 0 0 0 1 0 0 15 0 1588.8348 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209;Q5R207;B7ZAW0 Q5R210 561 575 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.0003407 59.57 2 1.9077 1.9947 NaN 1 Median 1.9077 1.9947 NaN 1 0 Median NaN NaN NaN 0 0 Median 16792000 3757700 13034000 16792000 3757700 13034000 0 0 0 6012 148 6151 15881;15882 24744;24745;24746;24747 24746 4 IAPVHIDSEAISALVK PTNPFLEMVKFLLERIAPVHIDSEAISALV APVHIDSEAISALVKLMNKSIEGTADDEEE R I A V K L 3 0 0 1 0 0 1 0 1 3 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1661.9352 G1UI16;Q29RF7 G1UI16 618 633 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 3 0.00012286 50.608 1 1 0.67577 0.60893 10.9 2 Median 0.65029 0.65772 NaN 1 0 Median 0.70225 0.56376 NaN 1 0 Median 24132000 13734000 10398000 16431000 9458400 6972500 7700800 4275200 3425600 6013 1270 6152 15883;15884 24748;24749;24750 24750 3 IAPVHIDTESISALIK PTNPFLEMIKFLLERIAPVHIDTESISALI APVHIDTESISALIKQVNKSIDGTADDEDE R I A I K Q 2 0 0 1 0 0 1 0 1 4 1 1 0 0 1 2 1 0 0 1 0 0 16 0 1705.9614 Q9NTI5;B7Z5S1 Q9NTI5 608 623 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.017342 22.475 2 2 0.66211 0.77209 25.343 4 Linear 0.73341 0.74817 0.72376 2 0 Median 0.61262 0.48239 0.40714 2 0 Median 34576000 19610000 14966000 26231000 14365000 11866000 8345100 5245400 3099700 6014 2069 6153 15885;15886;15887;15888 24751;24752;24753;24754 24751 4 IAPVIGLK SRSVPACQVPRLSERIAPVIGLKCVLALAF VPRLSERIAPVIGLKCVLALAFKKNTTDFV R I A L K C 1 0 0 0 0 0 0 1 0 2 1 1 0 0 1 0 0 0 0 1 0 0 8 0 809.53747 P78345 P78345 168 175 RPP38 Ribonuclease P protein subunit p38 yes yes 2 0.050893 49.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6286800 0 6286800 6286800 0 6286800 0 0 0 6015 1662 6154 15889 24755 24755 1 IAPYSVEIK ILKFLCIFLEKMGQKIAPYSVEIKNTCTSV EKMGQKIAPYSVEIKNTCTSVYTKDRAAKC K I A I K N 1 0 0 0 0 0 1 0 0 2 0 1 0 0 1 1 0 0 1 1 0 0 9 0 1018.5699 P78527;B4DL41;F5GX40 P78527 100 108 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0010049 91.318 2 0.53754 0.60796 10.811 2 Median 0.53754 0.60796 10.811 2 0 Median NaN NaN NaN 0 0 Median 267600000 164810000 102780000 267600000 164810000 102780000 0 0 0 6016 1665 6155 15890;15891 24756;24757;24758;24759 24756 4 IAQETFDAAVR GCTPTSTQAKMVSKRIAQETFDAAVRENIE VSKRIAQETFDAAVRENIEEFAMGPEEAVK R I A V R E 3 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 11 0 1219.6197 Q6NXE6;F5H2X2;F5H2K4;F5GWV0;F5H4P3;F5H3X1;F5H052;F5H7V0;F5GZP0 Q6NXE6 31 41 ARMC6 Armadillo repeat-containing protein 6 yes no 2 0.00033089 86.898 2 1.1703 1.1928 12.987 2 Median 1.1703 1.1928 12.987 2 0 Median NaN NaN NaN 0 0 Median 28268000 10906000 17362000 28268000 10906000 17362000 0 0 0 6017 1848 6156 15892;15893 24760;24761;24762 24762 3 IAQLEEQLDNETK VKSKYKASITALEAKIAQLEEQLDNETKER AKIAQLEEQLDNETKERQAACKQVRRTEKK K I A T K E 1 0 1 1 0 2 3 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 13 0 1529.7573 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1816 1828 MYH9;FLJ00279 Myosin-9 yes no 2 1.7751E-61 211.64 3 2 2.1566 2.0702 8.1103 4 Median 1.7141 1.9385 0.8713 2 0 Median 2.7161 2.2273 1.9268 2 0 Median 345330000 118270000 227070000 282770000 101520000 181250000 62564000 16746000 45818000 6018 81 6157 15894;15895;15896;15897;15898 24763;24764;24765;24766;24767;24768;24769;24770;24771;24772;24773;24774 24765 12 IAQLFSISPCQISQIYK AIYLEELTAVELTEKIAQLFSISPCQISQI QLFSISPCQISQIYKQGPTGIHVLISDEMI K I A Y K Q 1 0 0 0 1 3 0 0 0 4 1 1 0 1 1 3 0 0 1 0 0 0 17 0 1995.0499 A0A024R120;Q12800;F8VWL0;F8VX55 A0A024R120 444 460 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.00019496 50.207 1 1.5225 1.5275 NaN 1 Median 1.5225 1.5275 NaN 1 0 Median NaN NaN NaN 0 0 Median 6898900 2709100 4189800 6898900 2709100 4189800 0 0 0 6019 66 6158 15899 24775 24775 1 IAQPGDHVSVTGIFLPILR IPRSITVLVEGENTRIAQPGDHVSVTGIFL GDHVSVTGIFLPILRTGFRQVVQGLLSETY R I A L R T 1 1 0 1 0 1 0 2 1 3 2 0 0 1 2 1 1 0 0 2 0 0 19 0 2032.1469 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;C9J8M6 B3KUD7 157 175 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 3 1.7728E-06 79.311 2 2 0.9629 0.88001 36.202 4 Median 1.1316 1.197 3.7569 2 0 Median 0.79068 0.64139 4.9807 2 0 Median 99867000 45549000 54318000 74134000 32508000 41626000 25733000 13040000 12693000 6020 560 6159 15900;15901;15902;15903 24776;24777;24778;24779;24780;24781;24782 24777 7 IAQVSPGPR KGQGVGTGRSASKLRIAQVSPGPRDSPAFP SASKLRIAQVSPGPRDSPAFPDSPWRERVL R I A P R D 1 1 0 0 0 1 0 1 0 1 0 0 0 0 2 1 0 0 0 1 0 0 9 0 923.51886 Q9NQS7;B3KPD3 Q9NQS7 259 267 INCENP Inner centromere protein yes no 2 1.6569E-12 161.9 2 2 1.5221 1.4788 10.069 4 Median 1.203 1.3718 0.24072 2 0 Median 1.9857 1.6282 3.227 2 0 Median 259100000 110670000 148420000 227250000 100620000 126620000 31851000 10053000 21798000 6021 2059 6160 15904;15905;15906;15907 24783;24784;24785;24786;24787;24788;24789 24784 7 IASFPTAK RNEVRTHVGSYKGKKIASFPTAKYITEPEM GSYKGKKIASFPTAKYITEPEMVFEEHEVN K I A A K Y 2 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 8 0 833.4647 A0A024RD99;B7Z2D8;B7Z5F9;B3KP14;H0Y8R1;F5H5I6;B7Z3R7;H0YAK1;B3KW50;Q12849 A0A024RD99 179 186 GRSF1 G-rich sequence factor 1 yes no 2 0.0087497 77.282 1 1.7126 1.7731 NaN 1 Median 1.7126 1.7731 NaN 1 0 Median NaN NaN NaN 0 0 Median 18660000 6145300 12515000 18660000 6145300 12515000 0 0 0 6022 381 6161 15908 24790 24790 1 IASGLGLAWIVGR PFLFFLAVGGVYHPRIASGLGLAWIVGRVL PRIASGLGLAWIVGRVLYAYGYYTGEPSKR R I A G R V 2 1 0 0 0 0 0 3 0 2 2 0 0 0 0 1 0 1 0 1 0 0 13 0 1311.7663 Q53GB9;A0A024R8Z1;Q5VV89;O14880;Q5VV87 Q53GB9 85 97 MGST3 Microsomal glutathione S-transferase 3 yes no 2 5.4423E-19 145.89 2 2 1.8975 1.8202 32.03 4 Median 2.1485 2.4226 5.6387 2 0 Median 1.6964 1.396 2.7379 2 0 Median 197920000 64744000 133170000 172970000 55730000 117240000 24948000 9014600 15934000 6023 265 6162 15909;15910;15911;15912 24791;24792;24793;24794;24795;24796 24793 6 IASHYYITNDTVQTYNQLLK YDKKTGNFQVTELGRIASHYYITNDTVQTY YITNDTVQTYNQLLKPTLSEIELFRVFSLS R I A L K P 1 0 2 1 0 2 0 0 1 2 2 1 0 0 0 1 3 0 3 1 0 0 20 0 2384.2012 O75643;A4FU77;Q9H8B9 O75643 987 1006 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 1.9367E-07 81.723 2 2 0.97149 0.91308 23.134 4 Median 1.0408 1.1377 10.114 2 0 Median 0.95861 0.77272 2.6141 2 0 Median 100210000 57000000 43206000 83320000 47816000 35504000 16886000 9183700 7702000 6024 1411 6163 15913;15914;15915;15916 24797;24798;24799;24800;24801;24802;24803;24804 24799 8 IASLEVENQSLR ASSGTSGDHGELVVRIASLEVENQSLRGVV VVRIASLEVENQSLRGVVQELQQAISKLEA R I A L R G 1 1 1 0 0 1 2 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1357.7201 D3DWK1;B2RAR6;E9PRY8;P29692;E9PK01;Q9BW34;A0A087X1X7;Q71RH4;Q9H7G6;E9PQ49;E9PI39;E9PMW7;E9PIZ1;E9PPR1;E9PL12;E9PL71;H0YCK7;E9PN91 D3DWK1 450 461 EEF1D Elongation factor 1-delta yes no 2 0.00066952 86.463 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19565000 0 19565000 19565000 0 19565000 0 0 0 6025 875 6164 15917 24805 24805 1 IASNVLNTK VTWSMQEDGLLVLCRIASNVLNTKVKGPFV LLVLCRIASNVLNTKVKGPFVTWQVVRDIL R I A T K V 1 0 2 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 958.54475 Q6AHZ7;Q12789;Q6AWA4;H3BRD0 Q6AHZ7 1278 1286 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0019924 78.192 1 0.86729 0.93944 NaN 1 Median 0.86729 0.93944 NaN 1 0 Median NaN NaN NaN 0 0 Median 22448000 11100000 11347000 22448000 11100000 11347000 0 0 0 6026 1699 6165 15918 24806 24806 1 IASPEGQDYLK RDKIIVNDRQLACARIASPEGQDYLKGMAA ACARIASPEGQDYLKGMAAAGNYAWVNRSS R I A L K G 1 0 0 1 0 1 1 1 0 1 1 1 0 0 1 1 0 0 1 0 0 0 11 0 1219.6085 Q9Y3I0;B4DNA0 Q9Y3I0 298 308 RTCB tRNA-splicing ligase RtcB homolog yes no 2 3.3915E-06 97.565 3 2 1.1853 1.3615 15.88 4 Linear 1.133 1.2961 7.5317 2 0 Median 1.2684 1.0206 11.348 2 0 Median 297370000 147350000 150020000 287420000 143080000 144340000 9949800 4275900 5673800 6027 2137 6166 15919;15920;15921;15922;15923 24807;24808;24809;24810;24811;24812;24813 24808 7 IASWADLVNAHVVPGSGVVK IGNTVKKQYEGGIFKIASWADLVNAHVVPG DLVNAHVVPGSGVVKGLQEVGLPLHRGCLL K I A V K G 3 0 1 1 0 0 0 2 1 1 1 1 0 0 1 2 0 1 0 5 0 0 20 0 2018.0949 A8K5J1;P11172;B5LY71;B5LY70;B5LY64 A8K5J1 333 352 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase;Orotidine 5-phosphate decarboxylase yes no 3 2.1395E-06 52.298 2 2.3258 2.4271 5.6033 2 Median 2.3258 2.4271 5.6033 2 0 Median NaN NaN NaN 0 0 Median 34466000 14361000 20105000 34466000 14361000 20105000 0 0 0 6028 749 6167 15924;15925 24814;24815;24816;24817;24818 24818 5 IATGHGQQGVTQVVLK SGTGAPAKIITAVPKIATGHGQQGVTQVVL ATGHGQQGVTQVVLKGAPGQPGTILRTVPM K I A L K G 1 0 0 0 0 3 0 3 1 1 1 1 0 0 0 0 2 0 0 3 0 0 16 0 1634.9104 A6NEM2;P51610 A6NEM2 821 836 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2;3 3.5585E-19 129.77 3 1 0.76297 0.82978 29.734 3 Median 0.71559 0.77653 9.3806 2 0 Median 1.6177 1.2829 NaN 1 0 Median 97034000 48853000 48181000 92425000 47056000 45369000 4609800 1797200 2812600 6029 680 6168 15926;15927;15928;15929 24819;24820;24821;24822;24823 24821 5 IATPEEVR EGLTASGSGDVMRRRIATPEEVRLPLQHGW GDVMRRRIATPEEVRLPLQHGWRREVRIKK R I A V R L 1 1 0 0 0 0 2 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 8 0 913.4869 J3QK86;J3KPG5;F8VU39;Q9UIF9;H0YHQ7 J3QK86 514 521 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.0056635 89.752 1 1.051 1.0389 NaN 1 Median 1.051 1.0389 NaN 1 0 Median NaN NaN NaN 0 0 Median 15147000 5954700 9192400 15147000 5954700 9192400 0 0 0 6030 1260 6169 15930 24824 24824 1 IATTTASAATAAAIGATPR KASPNTRSGTRRSPRIATTTASAATAAAIG TASAATAAAIGATPRAKGKAKH________ R I A P R A 8 1 0 0 0 0 0 1 0 2 0 0 0 0 1 1 5 0 0 0 0 0 19 0 1714.9214 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 2076 2094 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 4.4178E-30 140.74 2 2 0.80583 0.79159 5.0726 4 Median 0.70666 0.79841 6.4242 2 0 Median 0.91904 0.78802 5.8487 2 0 Median 169190000 98065000 71128000 114410000 68795000 45611000 54786000 29269000 25517000 6031 186;1747 6170 15931;15932;15933;15934 24825;24826;24827;24828;24829;24830;24831;24832 24826 8 IAVEPVNPSELPK QIFRPLKFNTTSVIKIAVEPVNPSELPKML IKIAVEPVNPSELPKMLDGLRKVNKSYPSL K I A P K M 1 0 1 0 0 0 2 0 0 1 1 1 0 0 3 1 0 0 0 2 0 0 13 0 1391.766 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 541 553 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.00011214 87.789 2 2 0.90358 0.86723 21.246 4 Median 0.93598 1.049 5.403 2 0 Median 0.90178 0.72979 2.8903 2 0 Median 177700000 91724000 85974000 160090000 82709000 77379000 17610000 9015400 8595000 6032 794 6171 15935;15936;15937;15938 24833;24834;24835;24836;24837;24838;24839 24836 7 IAVHCTVR ARYTVRSFGIRRNEKIAVHCTVRGAKAEEI GIRRNEKIAVHCTVRGAKAEEILEKGLKVR K I A V R G 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 2 0 0 8 0 954.50692 Q08ES8;Q5VVD0;P62913;Q5VVC8;Q5VVC9 Q08ES8 67 74 RPL11 60S ribosomal protein L11 yes no 2;3 0.0015374 108.09 4 3 1.0041 0.94481 16.97 6 Median 0.81337 0.9501 15.267 3 0 Median 1.027 0.89584 21.652 3 0 Median 1179800000 649090000 530700000 1087600000 603880000 483710000 92206000 45209000 46997000 6033 1652 6172 15939;15940;15941;15942;15943;15944;15945 24840;24841;24842;24843;24844;24845;24846;24847;24848;24849;24850 24841 11 IAVHPDYQGMGYGSR QDPDFGGLSGGRVVRIAVHPDYQGMGYGSR IAVHPDYQGMGYGSRALQLLQMYYEGRFPC R I A S R A 1 1 0 1 0 1 0 3 1 1 0 0 1 0 1 1 0 0 2 1 0 0 15 0 1649.762 Q9H0A0;A0A087WV29 Q9H0A0 629 643 NAT10 N-acetyltransferase 10 yes no 2;3 3.6147E-05 79.885 4 3 1.1847 1.295 15.639 7 Median 1.1727 1.336 1.855 4 0 Median 1.3698 1.1422 16.498 3 0 Median 622550000 286500000 336050000 584180000 268790000 315390000 38375000 17711000 20664000 6034 2023 6173;6174 15946;15947;15948;15949;15950;15951;15952 24851;24852;24853;24854;24855;24856;24857;24858;24859;24860 24855 1861 10 IAVSNLHK TLTTKHPDYAILAARIAVSNLHKETKKVFS YAILAARIAVSNLHKETKKVFSDVMEDLYN R I A H K E 1 0 1 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 880.51305 B4DNN4;Q53GZ5;P23921 B4DNN4 51 58 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.0083469 80.229 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16958000 0 16958000 16958000 0 16958000 0 0 0 6035 1014 6175 15953 24861 24861 1 IAVYHLQELASAELAK LESKSGGRVQRRSAKIAVYHLQELASAELA AVYHLQELASAELAKEWPKRKVLQDLVPDD K I A A K E 4 0 0 0 0 1 2 0 1 1 3 1 0 0 0 1 0 0 1 1 0 0 16 0 1754.9567 G3XAG1;Q96ME7;B4DES6;B7Z9P6;Q658M0;B4E0X7 G3XAG1 344 359 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 3 6.4042E-07 93.51 1 2 0.72803 0.60187 23.867 3 Median 0.38931 0.40053 NaN 1 0 Median 0.75673 0.6055 0.85119 2 0 Median 42905000 26225000 16680000 18004000 11844000 6159700 24901000 14381000 10520000 6036 1275 6176 15954;15955;15956 24862;24863;24864;24865;24866 24863 4 IAWPPPTELGSSGSALEEGIK QQEKEDKPAETKKLRIAWPPPTELGSSGSA TELGSSGSALEEGIKMSKPKWPPEDEISKP R I A I K M 2 0 0 0 0 0 3 3 0 2 2 1 0 0 3 3 1 1 0 0 0 0 21 0 2138.0895 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 369 389 LIMA1 LIM domain and actin-binding protein 1 yes no 2 3.7709E-06 62.357 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32482000 0 32482000 0 0 0 32482000 0 32482000 6037 1010 6177 15957;15958 24867;24868 24867 2 IAYQLAVEAESEQK PEHRFELALQLGELKIAYQLAVEAESEQKW KIAYQLAVEAESEQKWKQLAELAISKCQFG K I A Q K W 3 0 0 0 0 2 3 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 14 0 1577.7937 P35606 P35606 656 669 COPB2 Coatomer subunit beta yes yes 2 1.8049E-05 97.957 3 2 1.358 1.1035 36.228 3 Median 1.6749 1.6756 NaN 1 0 Median 1.1538 0.94793 21.488 2 0 Median 19640000 8808600 10832000 15461000 6782000 8679300 4179100 2026500 2152600 6038 1545 6178 15959;15960;15961;15962;15963 24869;24870;24871;24872;24873;24874;24875 24871 7 ICDECNYGSYQGR CVICDSYVRPCTLVRICDECNYGSYQGRCV VRICDECNYGSYQGRCVICGGPGVSDAYYC R I C G R C 0 1 1 1 2 1 1 2 0 1 0 0 0 0 0 1 0 0 2 0 0 0 13 0 1620.6297 A0A024R1U2;Q7RTV0 A0A024R1U2 45 57 PHF5A PHD finger-like domain-containing protein 5A yes no 2 4.0124E-05 94.465 3 1.3183 1.33 NaN 1 Median 1.3183 1.33 NaN 1 0 Median NaN NaN NaN 0 0 Median 10303000 2699800 7603000 10303000 2699800 7603000 0 0 0 6039 91 6179 15964;15965;15966 24876;24877;24878;24879 24877 4 ICDETANATSTLK KDFQHLISSPLKKSRICDETANATSTLKKR SRICDETANATSTLKKRKKRRYSALEVDEE R I C L K K 2 0 1 1 1 0 1 0 0 1 1 1 0 0 0 1 3 0 0 0 0 0 13 0 1422.6661 B4DZG2;A0A024R8C1;Q15361 B4DZG2 72 84 TTF1 Transcription termination factor 1 yes no 2 0.00011522 91.313 1 2 1.8788 1.5944 4.5232 3 Median 1.565 1.5944 NaN 1 0 Median 1.9359 1.5529 6.0232 2 0 Median 22633000 9527700 13105000 13256000 5984500 7271500 9376900 3543200 5833700 6040 247 6180 15967;15968;15969 24880;24881;24882;24883 24883 4 ICDGVQFGAGIR ELNYCVPMGVQTGDRICDGVQFGAGIRFL_ GDRICDGVQFGAGIRFL_____________ R I C I R F 1 1 0 1 1 1 0 3 0 2 0 0 0 1 0 0 0 0 0 1 0 0 12 0 1291.6343 Q9Y512 Q9Y512 456 467 SAMM50 Sorting and assembly machinery component 50 homolog no no 2 0.00018029 111.46 2 0.82879 0.83469 NaN 1 Median 0.82879 0.83469 NaN 1 0 Median NaN NaN NaN 0 0 Median 24112000 14933000 9178700 24112000 14933000 9178700 0 0 0 6041 2147 6181 15970;15971 24884;24885;24886 24884 3 ICDQISDAVLDAHLQQDPDAK FLFTSESVGEGHPDKICDQISDAVLDAHLQ DAVLDAHLQQDPDAKVACETVAKTGMILLA K I C A K V 3 0 0 5 1 3 0 0 1 2 2 1 0 0 1 1 0 0 0 1 0 0 21 0 2351.1063 A0A140VJP5;P31153;B4DEX8 A0A140VJP5 33 53 MAT2A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase yes no 3 4.9789E-12 84.573 2 2 1.9278 1.601 35.431 4 Linear 1.8706 2.0413 0.23206 2 0 Median 1.3912 1.1273 15.493 2 0 Median 107260000 42967000 64296000 88194000 33751000 54443000 19069000 9216300 9852700 6042 606 6182 15972;15973;15974;15975 24887;24888;24889;24890;24891;24892;24893;24894;24895 24887 9 ICDVYNAVMDVVK QLQEELLKELRHGVKICDVYNAVMDVVKKQ VKICDVYNAVMDVVKKQKPELLNKITKNLG K I C V K K 1 0 1 2 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 4 0 0 13 0 1524.7316 Q9Y5B9;Q0VGA3 Q9Y5B9 322 334 SUPT16H FACT complex subunit SPT16 yes no 2 0.00011402 87.363 2 2 0.97621 0.77742 27.508 3 Median 0.48985 0.49829 NaN 1 0 Median 0.99136 0.80031 4.1027 2 0 Median 51599000 24120000 27479000 36415000 17142000 19273000 15184000 6977900 8206000 6043 2148 6183;6184 15976;15977;15978;15979 24896;24897;24898;24899;24900;24901 24898 1992 6 ICDYLFNVSDSSALNLAK EDPLEFLDMAEIKEKICDYLFNVSDSSALN YLFNVSDSSALNLAKNIGLTKARDINAVLI K I C A K N 2 0 2 2 1 0 0 0 0 1 3 1 0 1 0 3 0 0 1 1 0 0 18 0 2028.9826 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 303 320 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.0011162 54.343 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8664000 0 8664000 8664000 0 8664000 0 0 0 6044 5 6185 15980;15981 24902;24903;24904 24903 3 ICEEETGSTSIQAADSTAVNGSITPTDKK EKPAVCYQAITKKLKICEEETGSTSIQAAD DSTAVNGSITPTDKKIGFLGLGLMGSGIVS K I C K K I 3 0 1 2 1 1 3 2 0 3 0 2 0 0 1 4 5 0 0 1 0 0 29 1 3009.4085 D3DUE7;Q49A26;K7EPU6 D3DUE7 263 291 N-PAC;GLYR1 Putative oxidoreductase GLYR1 yes no 3 0.060709 5.5436 1 2.1692 1.8709 NaN 1 Median NaN NaN NaN 0 0 Median 2.1692 1.8709 NaN 1 0 Median 3110800 1040100 2070800 0 0 0 3110800 1040100 2070800 6045 1194 6186 15982 24905 24905 1 ICEILQAEK CSLQTTMNKLNELEKICEILQAEKYELVTE LNELEKICEILQAEKYELVTELNDSRSECI K I C E K Y 1 0 0 0 1 1 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1102.5692 P49454 P49454 1306 1314 CENPF Centromere protein F yes yes 2 0.027774 54.191 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4553800 0 4553800 4553800 0 4553800 0 0 0 6046 1581 6187 15983 24906 24906 1 ICEVRPCGQPVYSSLK VTNDNPECRLVKETRICEVRPCGQPVYSSL CEVRPCGQPVYSSLKKGKKCSKTKKSPEPV R I C L K K 0 1 0 0 2 1 1 1 0 1 1 1 0 0 2 2 0 0 1 2 0 0 16 1 1891.9284 B4DI61;Q6FI18;O00622;Q53FA4;Q9UID7 B4DI61 242 257 CYR61 Protein CYR61 yes no 3 7.0436E-05 71.354 2 2 1.6062 1.6098 59.961 4 Median 2.3016 2.7061 1.3371 2 0 Median 1.118 0.95802 1.2727 2 0 Median 116910000 38239000 78675000 86683000 24147000 62536000 30232000 14092000 16139000 6047 979 6188 15984;15985;15986;15987 24907;24908;24909;24910;24911;24912;24913 24909 7 ICGDIHGQYTDLLR FLSQPILLELEAPLKICGDIHGQYTDLLRL KICGDIHGQYTDLLRLFEYGGFPPEANYLF K I C L R L 0 1 0 2 1 1 0 2 1 2 2 0 0 0 0 0 1 0 1 0 0 0 14 0 1659.8039 V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 V9HW04 60 73 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 3 3.7919E-05 81.311 2 2 1.437 1.4006 21.941 4 Median 1.0452 1.1768 0.25095 2 0 Median 1.9876 1.7165 4.3945 2 0 Median 235290000 104570000 130720000 166370000 82267000 84101000 68925000 22302000 46623000 6048 1633 6189 15988;15989;15990;15991 24914;24915;24916;24917;24918;24919;24920 24915 7 ICGDIHGQYYDLLR FLSQPILLELEAPLKICGDIHGQYYDLLRL KICGDIHGQYYDLLRLFEYGGFPPESNYLF K I C L R L 0 1 0 2 1 1 0 2 1 2 2 0 0 0 0 0 0 0 2 0 0 0 14 0 1721.8195 P62136;A0A140VJS9;B3KXM2;E9PMD7;F5H1L6;F5H037;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5 P62136 61 74 PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 3 8.4327E-10 101.2 3 2 1.8831 1.8284 22.384 4 Median 1.3341 1.4976 3.8148 2 0 Median 2.5554 2.2018 1.8654 2 0 Median 311300000 95427000 215870000 248050000 77917000 170140000 63245000 17510000 45735000 6049 1632;343 6190 15992;15993;15994;15995;15996 24921;24922;24923;24924;24925;24926;24927;24928 24922 8 ICIIWDLQSCQATR FSADGHTMLSSGRDKICIIWDLQSCQATRT KICIIWDLQSCQATRTVPVFESVEAAVLLP K I C T R T 1 1 0 1 2 2 0 0 0 3 1 0 0 0 0 1 1 1 0 0 0 0 14 0 1762.8495 A0A087WYP7;Q12788;J3KNP2 Q12788 218 231 TBL3 Transducin beta-like protein 3 no no 2 0.00020231 69.01 1 2 1.1779 0.99511 20.959 2 Median NaN NaN NaN 0 0 Median 1.1779 0.99511 20.959 2 0 Median 16358000 9617800 6740000 3794300 3794300 0 12563000 5823500 6740000 6050 1698;436 6191 15997;15998;15999 24929;24930;24931;24932;24933 24933 5 ICLQPPPTSR GEAGEGPGWGGAHPRICLQPPPTSRTPFPP GAHPRICLQPPPTSRTPFPPPRLPALEQGP R I C S R T 0 1 0 0 1 1 0 0 0 1 1 0 0 0 3 1 1 0 0 0 0 0 10 0 1167.607 A0A024RCN6;P26640;A0A140T954;A2ABF4;A0A0G2JJT9 A0A024RCN6 40 49 VARS Valine--tRNA ligase yes no 2 0.0012959 74.301 2 1.2517 1.2676 NaN 1 Median 1.2517 1.2676 NaN 1 0 Median NaN NaN NaN 0 0 Median 23311000 13513000 9797600 23311000 13513000 9797600 0 0 0 6051 363 6192 16000;16001 24934;24935;24936 24935 3 ICNEILTSPCSPEIR QDYQALTVHDNLAMKICNEILTSPCSPEIR ICNEILTSPCSPEIRVYTKALSSLELSSHL K I C I R V 0 1 1 0 2 0 2 0 0 3 1 0 0 0 2 2 1 0 0 0 0 0 15 0 1787.8546 Q9BPX3;Q6NUR1 Q9BPX3 834 848 NCAPG Condensin complex subunit 3 yes no 2 2.9086E-15 131.17 2 2 1.0535 1.0395 29.224 4 Median 0.71599 0.80604 0.56267 2 0 Median 1.5434 1.3371 0.20505 2 0 Median 261110000 125650000 135460000 162410000 86136000 76278000 98695000 39512000 59183000 6052 1995 6193 16002;16003;16004;16005 24937;24938;24939;24940;24941;24942;24943;24944 24938 8 ICNYEGPAK GASSEKGRKTYPTVKICNYEGPAKIEVDLV TYPTVKICNYEGPAKIEVDLVTHSDPPRAH K I C A K I 1 0 1 0 1 0 1 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 9 0 1050.4804 Q00653;A0A1P8C958;D3DR86 Q00653 82 90 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2 0.0093753 64.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6053 1674 6194 16006 24945 24945 1 ICPVEFNPNFVAR GSRGFPLRLQATEVRICPVEFNPNFVARMI VRICPVEFNPNFVARMIPKVEWSAFLEAAD R I C A R M 1 1 2 0 1 0 1 0 0 1 0 0 0 2 2 0 0 0 0 2 0 0 13 0 1561.7711 F5GX77;A0A024R565;Q9UI30 F5GX77 32 44 TRMT112;HSPC152 Multifunctional methyltransferase subunit TRM112-like protein yes no 2 0.0036439 49.35 2 1.3865 1.4261 0.37762 2 Median 1.3865 1.4261 0.37762 2 0 Median NaN NaN NaN 0 0 Median 30627000 12226000 18401000 30627000 12226000 18401000 0 0 0 6054 170 6195 16007;16008 24946;24947;24948 24948 3 ICQADIVEAVDIASAAK EPGFLEGEDGEDTAKICQADIVEAVDIASA QADIVEAVDIASAAKHFDLNLRQFGPYRLN K I C A K H 5 0 0 2 1 1 1 0 0 3 0 1 0 0 0 1 0 0 0 2 0 0 17 0 1772.8978 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 171 187 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 5.2871E-18 130.2 2 0.78411 0.82564 7.5908 2 Median 0.78411 0.82564 7.5908 2 0 Median NaN NaN NaN 0 0 Median 75981000 41172000 34809000 75981000 41172000 34809000 0 0 0 6055 809 6196 16009;16010 24949;24950 24949 2 ICRDPQTPVLQTK KDDINLLPSKSSVTKICRDPQTPVLQTKHR TKICRDPQTPVLQTKHRARAVTCKSTAELE K I C T K H 0 1 0 1 1 2 0 0 0 1 1 1 0 0 2 0 2 0 0 1 0 0 13 1 1554.8188 Q643R0;Q9ULW0;B3KM90 Q643R0 363 375 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2;3 9.6693E-10 107.97 1 2 1.2928 1.0935 NaN 1 Median NaN NaN NaN 0 0 Median 1.2928 1.0935 NaN 1 0 Median 16122000 10387000 5735500 0 0 0 16122000 10387000 5735500 6056 1837 6197 16011;16012;16013 24951;24952;24953 24951 3 ICTICNELFPENVYSVHFEK TGPPPGNTSSTQKWKICTICNELFPENVYS NELFPENVYSVHFEKGHKAEKVPAVANYIM K I C E K G 0 0 2 0 2 0 3 0 1 2 1 1 0 2 1 1 1 0 1 2 0 0 20 0 2498.161 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 448 467 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.0022574 24.875 2 1.715 1.3517 6.0813 2 Median NaN NaN NaN 0 0 Median 1.715 1.3517 6.0813 2 0 Median 32052000 12627000 19425000 0 0 0 32052000 12627000 19425000 6057 878 6198 16014;16015 24954;24955 24955 2 ICYQEVSQCFGVLSSR KLHIRTVPLYESPRKICYQEVSQCFGVLSS CYQEVSQCFGVLSSRIEVQDTSGGTTALRP K I C S R I 0 1 0 0 2 2 1 1 0 1 1 0 0 1 0 3 0 0 1 2 0 0 16 0 1931.887 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 724 739 DDB1 DNA damage-binding protein 1 yes no 2 0.00012742 77.204 2 1 0.5883 0.60589 9.6854 3 Median 0.5798 0.58892 4.0184 2 0 Median 0.83821 0.69136 NaN 1 0 Median 50183000 31257000 18927000 38592000 23507000 15086000 11591000 7749800 3841100 6058 1770 6199 16016;16017;16018 24956;24957;24958;24959;24960 24959 5 IDAELVLPTIR KPTNLGIVLVHGYYKIDAELVLPTIRSAVE GYYKIDAELVLPTIRSAVEKQLNLIAQGKA K I D I R S 1 1 0 1 0 0 1 0 0 2 2 0 0 0 1 0 1 0 0 1 0 0 11 0 1238.7234 B3KU89;H0Y6W0;A8K4N2;A0A024R1C2;O95985 B3KU89 96 106 TOP3B DNA topoisomerase;DNA topoisomerase 3-beta-1 yes no 2 0.00071156 73.067 2 1.6096 1.6086 NaN 1 Median 1.6096 1.6086 NaN 1 0 Median NaN NaN NaN 0 0 Median 18294000 7128400 11166000 18294000 7128400 11166000 0 0 0 6059 75 6200 16019;16020 24961;24962 24961 2 IDASELSFPFHESILK TTLGLEVAKQSQHDKIDASELSFPFHESIL DASELSFPFHESILKVIEEEWQQVDRQLPS K I D L K V 1 0 0 1 0 0 2 0 1 2 2 1 0 2 1 3 0 0 0 0 0 0 16 0 1831.9356 P42166 P42166 485 500 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 3 0.0068235 30.961 1 1.4928 1.493 NaN 1 Median 1.4928 1.493 NaN 1 0 Median NaN NaN NaN 0 0 Median 15406000 7104200 8301600 15406000 7104200 8301600 0 0 0 6060 1562 6201 16021 24963;24964 24964 2 IDCDNLEQYFIQQGGGPDK KEHKMDQAIIFCRTKIDCDNLEQYFIQQGG NLEQYFIQQGGGPDKKGHQFSCVCLHGDRK K I D D K K 0 0 1 3 1 3 1 3 0 2 1 1 0 1 1 0 0 0 1 0 0 0 19 0 2195.9793 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 436 454 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 1.8747E-05 62.891 2 1.1902 1.2342 NaN 1 Median 1.1902 1.2342 NaN 1 0 Median NaN NaN NaN 0 0 Median 13503000 8139400 5363400 13503000 8139400 5363400 0 0 0 6061 452 6202 16022;16023 24965;24966 24966 2 IDCFSEVPTSVFGEK RISRYLANKCSIASRIDCFSEVPTSVFGEK IDCFSEVPTSVFGEKLREQVEERLSFYETG R I D E K L 0 0 0 1 1 0 2 1 0 1 0 1 0 2 1 2 1 0 0 2 0 0 15 0 1713.792 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 382 396 NOP56 Nucleolar protein 56 yes no 2 9.9467E-39 171.32 2 2 0.83461 0.83325 4.2512 4 Median 0.70555 0.80184 1.0177 2 0 Median 0.99708 0.86238 0.44454 2 0 Median 599390000 326640000 272750000 296940000 175910000 121030000 302450000 150730000 151720000 6062 785 6203 16024;16025;16026;16027 24967;24968;24969;24970;24971;24972;24973;24974;24975 24972 9 IDDIVSGHK QTYKTAVETAVLLLRIDDIVSGHKKKGDDQ AVLLLRIDDIVSGHKKKGDDQSRQGGAPDA R I D H K K 0 0 0 2 0 0 0 1 1 2 0 1 0 0 0 1 0 0 0 1 0 0 9 0 982.50836 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368 B4DUR8 474 482 CCT3 T-complex protein 1 subunit gamma yes no 2 0.029937 53.493 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16425000 0 16425000 16425000 0 16425000 0 0 0 6063 951 6204 16028 24976 24976 1 IDDPIDEEEEFEELK VPASVKVLRRSNRKKIDDPIDEEEEFEELK IDDPIDEEEEFEELKGSEPHMRTRNQGRRT K I D L K G 0 0 0 3 0 0 6 0 0 2 1 1 0 1 1 0 0 0 0 0 0 0 15 0 1848.8153 Q8WWQ0;Q9NWP3 Q8WWQ0 1746 1760 PHIP PH-interacting protein yes no 2 5.6836E-05 95.094 3 0.78527 0.77009 NaN 1 Median 0.78527 0.77009 NaN 1 0 Median NaN NaN NaN 0 0 Median 22938000 13029000 9909600 22938000 13029000 9909600 0 0 0 6064 1942 6205 16029;16030;16031 24977;24978;24979;24980;24981;24982;24983 24983 7 IDDSEVVDATMHGNAAR EKYYDSKGIGCYMFRIDDSEVVDATMHGNA DSEVVDATMHGNAARFINHSCEPNCYSRVI R I D A R F 3 1 1 3 0 0 1 1 1 1 0 0 1 0 0 1 1 0 0 2 0 0 17 0 1799.8108 Q03164;B4DIJ7 Q03164 3887 3903 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180;Histone-lysine N-methyltransferase yes no 3 3.4878E-07 87.519 1 1.027 1.1167 NaN 1 Median 1.027 1.1167 NaN 1 0 Median NaN NaN NaN 0 0 Median 28641000 11704000 16937000 28641000 11704000 16937000 0 0 0 6065 1680 6206 16032 24984 24984 1490 1 IDEAESLNDEELEEK ELPNAAQAQKEEQLKIDEAESLNDEELEEK IDEAESLNDEELEEKEKLLTQGFTNWNKRD K I D E K E 1 0 1 2 0 0 6 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 15 0 1761.7792 O60264;B7ZAX9;B4DZC0 O60264 820 834 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 5.1334E-99 230.59 5 2 3.6378 3.5985 27.831 4 Median 2.4477 2.825 1.3145 2 0 Median 5.3539 4.5735 0.99667 2 0 Median 607300000 152450000 454850000 446060000 126520000 319540000 161250000 25933000 135310000 6066 1391 6207 16033;16034;16035;16036;16037;16038;16039 24985;24986;24987;24988;24989;24990;24991;24992;24993;24994;24995;24996;24997;24998;24999;25000;25001 24991 17 IDEPLEGSEDR QRIKQIRHESGASIKIDEPLEGSEDRIITI ASIKIDEPLEGSEDRIITITGTQDQIQNAQ K I D D R I 0 1 0 2 0 0 3 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 11 0 1258.5677 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;B3KU16;S4R359 B4DUQ1 399 409 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 8.4595E-06 109.42 2 2 1.2975 1.3021 30.151 4 Median 1.4771 1.6584 1.7024 2 0 Median 1.1365 0.98808 6.5234 2 0 Median 179750000 73722000 106030000 169920000 69068000 100850000 9829000 4654300 5174700 6067 102 6208 16040;16041;16042;16043 25002;25003;25004;25005;25006;25007;25008 25004 7 IDFYFDENPYFENK RVEVTEFEDIKSGYRIDFYFDENPYFENKV RIDFYFDENPYFENKVLSKEFHLNESGDPS R I D N K V 0 0 2 2 0 0 2 0 0 1 0 1 0 3 1 0 0 0 2 0 0 0 14 0 1839.7992 A0A0C4DFV9;B2RCX0;A0A024R895;Q5VXV3;A0A087X027;Q01105;P0DME0 A0A0C4DFV9 113 126 SET;SETSIP Protein SET;Protein SETSIP yes no 2 0.0011912 55.452 2 0.49818 0.39759 1.9322 2 Median NaN NaN NaN 0 0 Median 0.49818 0.39759 1.9322 2 0 Median 8917600 5892100 3025500 0 0 0 8917600 5892100 3025500 6068 244 6209 16044;16045 25009;25010 25009 2 IDGGITGALR LLEDFLDYEGYKYERIDGGITGALRQEAID YKYERIDGGITGALRQEAIDRFNAPGAQQF R I D L R Q 1 1 0 1 0 0 0 3 0 2 1 0 0 0 0 0 1 0 0 0 0 0 10 0 971.53999 Q12873;B4DLC6;B4DKV1 Q12873 1106 1115 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.0098377 57.708 1 2 1.5372 1.3557 NaN 1 Median NaN NaN NaN 0 0 Median 1.5372 1.3557 NaN 1 0 Median 3187300 731220 2456100 0 0 0 3187300 731220 2456100 6069 1701 6210 16046;16047;16048 25011;25012;25013 25011 3 IDGGITGNMR LLEDFLEHEGYKYERIDGGITGNMRQEAID YKYERIDGGITGNMRQEAIDRFNAPGAQQF R I D M R Q 0 1 1 1 0 0 0 3 0 2 0 0 1 0 0 0 1 0 0 0 0 0 10 0 1032.5022 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1089 1098 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.00024794 85.676 1 1 1.0795 1.0546 66.32 2 Median 0.61884 0.65983 NaN 1 0 Median 1.8831 1.6856 NaN 1 0 Median 45916000 28345000 17571000 43934000 27599000 16335000 1981600 745470 1236100 6070 515 6211;6212 16049;16050 25014;25015;25016;25017 25015 375 4 IDGITIQAR KHALLEADVAAHQDRIDGITIQARQFQDAG AAHQDRIDGITIQARQFQDAGHFDAENIKK R I D A R Q 1 1 0 1 0 1 0 1 0 3 0 0 0 0 0 0 1 0 0 0 0 0 9 0 985.55564 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 734 742 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.00068897 95.741 2 1.6966 1.7742 2.8159 2 Median 1.6966 1.7742 2.8159 2 0 Median NaN NaN NaN 0 0 Median 40963000 17356000 23608000 40963000 17356000 23608000 0 0 0 6071 523 6213 16051;16052 25018;25019 25019 2 IDGLLIDQIQR RYFGGMVWYFVNNKKIDGLLIDQIQRD___ NNKKIDGLLIDQIQRD______________ K I D Q R D 0 1 0 2 0 2 0 1 0 3 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1282.7245 H7C5L9;G5E9W7;G5E9V5;P82650;Q59GX8 H7C5L9 110 120 MRPS22 28S ribosomal protein S22, mitochondrial yes no 2 3.0215E-05 87.913 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6072 1277 6214 16053 25020 25020 1 IDGNLDYR QGKTEEFVKLLEAARIDGNLDYRDHEKDQM KLLEAARIDGNLDYRDHEKDQMTCLDTLAA R I D Y R D 0 1 1 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 964.46141 A8K6X9;Q6PD62;H0YCE8 A8K6X9 69 76 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.0082418 79.474 1 1.5327 1.6759 NaN 1 Median 1.5327 1.6759 NaN 1 0 Median NaN NaN NaN 0 0 Median 35270000 11005000 24264000 35270000 11005000 24264000 0 0 0 6073 765 6215 16054 25021 25021 1 IDGNLVVRPYTPISSDDDK ILGLPVGQHIYLSARIDGNLVVRPYTPISS LVVRPYTPISSDDDKGFVDLVIKVYFKDTH R I D D K G 0 1 1 4 0 0 0 1 0 2 1 1 0 0 2 2 1 0 1 2 0 0 19 1 2103.0484 A0A024R4X0;P00387;B1AHF3;Q6ZVI6 A0A024R4X0 75 93 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 3 1.0669E-30 131.67 2 1 1.0226 1.2236 38.42 3 Plateau 1.0011 1.1749 5.7433 2 0 Median 0.73394 0.6062 NaN 1 0 Median 88774000 41756000 47019000 83340000 38501000 44839000 5434100 3254300 2179900 6074 164 6216 16055;16056;16057 25022;25023;25024;25025 25023 4 IDGVSLLVQR LPDKHSLAFVVRIERIDGVSLLVQRTIARL VRIERIDGVSLLVQRTIARLRLKKIFSGVF R I D Q R T 0 1 0 1 0 1 0 1 0 1 2 0 0 0 0 1 0 0 0 2 0 0 10 0 1098.6397 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 105 114 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 6.3643E-13 149.82 4 2 1.0497 0.96375 4.7969 3 Plateau 0.88971 0.96375 NaN 1 0 Median 1.053 0.89031 2.0332 2 0 Median 62480000 32899000 29581000 49478000 26577000 22901000 13002000 6321900 6680400 6075 378 6217 16058;16059;16060;16061;16062;16063 25026;25027;25028;25029;25030;25031;25032;25033;25034;25035;25036;25037;25038;25039 25028 14 IDIDPEETVK ______________________________ QQTFKIDIDPEETVKALKEKIESEKGKDAF K I D V K A 0 0 0 2 0 0 2 0 0 2 0 1 0 0 1 0 1 0 0 1 0 0 10 0 1157.5816 P54727;B4DEA3;Q53F10;Q5W0S5 P54727 15 24 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.0095663 54.539 2 1 0.67254 0.61811 27.729 2 Median 0.47114 0.50806 NaN 1 0 Median 0.96003 0.752 NaN 1 0 Median 49130000 31385000 17745000 37532000 25749000 11783000 11598000 5635600 5962700 6076 1610 6218 16064;16065;16066 25040;25041;25042 25040 3 IDIIPNPQER SLTDPSKLDSGKELKIDIIPNPQERTLTLV GKELKIDIIPNPQERTLTLVDTGIGMTKAD K I D E R T 0 1 1 1 0 1 1 0 0 3 0 0 0 0 2 0 0 0 0 0 0 0 10 0 1193.6404 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;Q58FF7;O14942 B4DMA2 73 82 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 7.8785E-05 98.033 2 2 1.7908 1.7924 44.055 4 Median 2.2346 2.6201 5.692 2 0 Median 1.4466 1.2267 5.6357 2 0 Median 707620000 219860000 487760000 662110000 202120000 459990000 45513000 17738000 27775000 6077 379 6219 16067;16068;16069;16070 25043;25044;25045;25046;25047;25048;25049;25050;25051;25052 25043 10 IDILDSALLRPGR FEATKNIKVIMATNRIDILDSALLRPGRID NRIDILDSALLRPGRIDRKIEFPPPNEEAR R I D G R I 1 2 0 2 0 0 0 1 0 2 3 0 0 0 1 1 0 0 0 0 0 0 13 1 1437.8304 Q59GS3;A0A140VJS3;P62195 Q59GS3 294 306 PSMC5 26S protease regulatory subunit 8 yes no 3 0.010413 35.204 2 2.0917 2.2883 4.6307 2 Median 2.0917 2.2883 4.6307 2 0 Median NaN NaN NaN 0 0 Median 42675000 14701000 27974000 42675000 14701000 27974000 0 0 0 6078 608 6220 16071;16072 25053;25054 25053 2 IDILTELR VDSYATQLEAILEQKIDILTELRDKVKSFR EAILEQKIDILTELRDKVKSFRAALQEEEQ K I D L R D 0 1 0 1 0 0 1 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 8 0 971.56515 B0AZS5;O00139;B4DM85 B0AZS5 625 632 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 0.009998 73.248 2 1 0.7155 0.79471 6.2621 3 Plateau 0.71272 0.77776 6.3715 2 0 Median 0.8348 0.72132 NaN 1 0 Median 76994000 44510000 32484000 73574000 42501000 31072000 3420700 2008700 1412000 6079 804 6221 16073;16074;16075 25055;25056;25057;25058;25059;25060 25058 6 IDISAVVAYTIAVK MKSWNDCLNKEGFDKIDISAVVAYTIAVKE KIDISAVVAYTIAVKEDGELNLMKKAASIT K I D V K E 3 0 0 1 0 0 0 0 0 3 0 1 0 0 0 1 1 0 1 3 0 0 14 0 1461.8443 Q9Y5B9;Q0VGA3 Q9Y5B9 162 175 SUPT16H FACT complex subunit SPT16 yes no 2 0.00012949 86.313 11 0.69923 0.78468 11.155 3 Median 0.69923 0.78468 11.155 3 0 Median NaN NaN NaN 0 0 Median 198650000 114350000 84302000 198650000 114350000 84302000 0 0 0 6080 2148 6222 16076;16077;16078;16079;16080;16081;16082;16083;16084;16085;16086 25061;25062;25063;25064;25065;25066;25067;25068;25069;25070;25071;25072;25073 25068 13 IDISNVK LRRTHQKFVIATSTKIDISNVKIPKHLTDA FVIATSTKIDISNVKIPKHLTDAYFKKKKL K I D V K I 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 7 0 787.44397 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 201 207 RPL6 60S ribosomal protein L6 yes no 2 0.014426 100.07 1 1.036 1.2239 NaN 1 Median 1.036 1.2239 NaN 1 0 Median NaN NaN NaN 0 0 Median 1238300000 636770000 601490000 1238300000 636770000 601490000 0 0 0 6081 342 6223 16087 25074 25074 1 IDISPSTFR QEAAKNKKSPEIHRRIDISPSTFRKHGLAH PEIHRRIDISPSTFRKHGLAHDEMKSPREP R I D F R K 0 1 0 1 0 0 0 0 0 2 0 0 0 1 1 2 1 0 0 0 0 0 9 0 1034.5397 Q9Y2W1 Q9Y2W1 679 687 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.019876 58.981 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13233000 13233000 0 13233000 13233000 0 0 0 0 6082 2128 6224 16088;16089 25075;25076 25076 2 IDISPSTLR EEHSTRQKSPEIHRRIDISPSTLRKHTRLA PEIHRRIDISPSTLRKHTRLAGEERVFKEE R I D L R K 0 1 0 1 0 0 0 0 0 2 1 0 0 0 1 2 1 0 0 0 0 0 9 0 1000.5553 Q9NYF8;Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91 Q9NYF8 655 663 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.017823 60.59 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9902600 0 9902600 9902600 0 9902600 0 0 0 6083 2083 6225 16090;16091 25077;25078 25077 2 IDIVENR FMYLNEVAGKHGVGRIDIVENRFIGMKSRG AGKHGVGRIDIVENRFIGMKSRGIYETPAG R I D N R F 0 1 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 7 0 857.46068 Q5T6L4;P00966;A8KAP9;B4E395 Q5T6L4 266 272 ASS;ASS1 Argininosuccinate synthase yes no 2 0.024268 94.662 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29092000 0 29092000 29092000 0 29092000 0 0 0 6084 1437 6226 16092 25079 25079 1 IDIYQLDTASISGTITNEK WSPRGEQYVVIIQNKIDIYQLDTASISGTI QLDTASISGTITNEKRISSVKFLSESVLAV K I D E K R 1 0 1 2 0 1 1 1 0 4 1 1 0 0 0 2 3 0 1 0 0 0 19 0 2081.0528 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 187 205 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 5.5076E-64 179.39 2 2 1.1778 1.1412 6.7714 4 Median 0.97296 1.0671 8.0993 2 0 Median 1.3684 1.1608 1.026 2 0 Median 221810000 96931000 124880000 93077000 42518000 50559000 128730000 54413000 74317000 6085 580 6227 16093;16094;16095;16096 25080;25081;25082;25083;25084;25085;25086;25087;25088;25089 25089 10 IDKPILK SANRAVVGVVAGGGRIDKPILKAGRAYHKY GVVAGGGRIDKPILKAGRAYHKYKAKRNCW R I D L K A 0 0 0 1 0 0 0 0 0 2 1 2 0 0 1 0 0 0 0 0 0 0 7 1 825.53239 P62917;E9PKZ0;E9PKU4;E9PP36 P62917 175 181 RPL8 60S ribosomal protein L8 yes no 1 0.054552 3.1278 1 0.93326 0.80872 NaN 1 Median NaN NaN NaN 0 0 Median 0.93326 0.80872 NaN 1 0 Median 1143200 518310 624890 0 0 0 1143200 518310 624890 6086 1653 6228 16097 25090 25090 0 IDLAVLLGK VPLPAENVTITAGQRIDLAVLLGKTPSTME ITAGQRIDLAVLLGKTPSTMENDSSNLDPS R I D G K T 1 0 0 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 0 1 0 0 9 0 940.59572 B4DZJ6;B4DYY5;F8W726;Q14157;Q5VU77 B4DZJ6 196 204 UBAP2L Ubiquitin-associated protein 2-like yes no 2 0.00085417 93.429 2 2.7684 2.7475 9.1014 2 Median 2.7684 2.7475 9.1014 2 0 Median NaN NaN NaN 0 0 Median 22521000 6038900 16482000 22521000 6038900 16482000 0 0 0 6087 1052 6229 16098;16099 25091;25092;25093;25094 25094 4 IDLDSMENSER ESKLLEIQTEKNKQKIDLDSMENSERIKII NKQKIDLDSMENSERIKIIRQNLQMEIKIT K I D E R I 0 1 1 2 0 0 2 0 0 1 1 0 1 0 0 2 0 0 0 0 0 0 11 0 1307.5663 B3KVZ3;A0A0S2Z5T0;Q9H3R5;H0Y9E6 B3KVZ3 165 175 CENPH Centromere protein H yes no 2 0.0009067 68.657 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6088 585 6230 16100;16101 25095;25096 25095 436 2 IDLEAHVDLVK I D V K 1 0 0 2 0 0 1 0 1 1 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1250.6871 REV__B3KM42 yes no 2 0.0058056 55.549 1 1.298 1.029 NaN 1 Median NaN NaN NaN 0 0 Median 1.298 1.029 NaN 1 0 Median 4263200 1922000 2341200 0 0 0 4263200 1922000 2341200 + 6089 2169 6231 16102 25097 25097 1 IDLENTLEQEQEALVNR TISKQLTLEQLRREKIDLENTLEQEQEALV LENTLEQEQEALVNRLWKRMDKLEAEKRIL K I D N R L 1 1 2 1 0 2 4 0 0 1 3 0 0 0 0 0 1 0 0 1 0 0 17 0 2013.0015 Q05CP8;A0A024QZJ7;Q16204 Q05CP8 200 216 CCDC6 Coiled-coil domain-containing protein 6 yes no 2 0.00045149 65.563 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6090 1686 6232 16103;16104 25098;25099 25099 2 IDLLDRK GLTGSKMSSSEEESKIDLLDRKEDVKKKLK SSSEEESKIDLLDRKEDVKKKLKKAFCEPG K I D R K E 0 1 0 2 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 1 871.51272 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 232 238 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.033351 81.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12630000 0 12630000 12630000 0 12630000 0 0 0 6091 567 6233 16105 25100 25100 1 IDLPAENSNSETIIITGK GGANIKKIREESNTKIDLPAENSNSETIII PAENSNSETIIITGKRANCEAARSRILSIQ K I D G K R 1 0 2 1 0 0 2 1 0 4 1 1 0 0 1 2 2 0 0 0 0 0 18 0 1913.9946 A0A024R4E5;Q00341;B2R5V9;H0Y394;Q6ZS03;Q96CF6;Q6ZN49;H7BZC3;H7C2D1 A0A024R4E5 615 632 HDLBP Vigilin yes no 2 7.35E-05 50.897 2 1 2.0625 2.1474 36.42 3 Plateau 1.9858 2.0439 6.9842 2 0 Median 1.3766 1.0941 NaN 1 0 Median 49573000 17529000 32044000 46594000 16287000 30307000 2979400 1242000 1737400 6092 154 6234 16106;16107;16108 25101;25102;25103;25104 25102 4 IDLTLLNR CNVMLESRFEKMYEKIDLTLLNRLLRLIVD FEKMYEKIDLTLLNRLLRLIVDHNIADYMT K I D N R L 0 1 1 1 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 8 0 956.56548 Q6P2Q9;I3L0J9 Q6P2Q9 988 995 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0092533 75.109 2 2 0.86736 0.79834 17.695 4 Median 0.86463 0.95853 14.125 2 0 Median 0.86736 0.73035 0.85151 2 0 Median 129500000 66478000 63021000 117850000 60167000 57687000 11644000 6310500 5333500 6093 1854 6235 16109;16110;16111;16112 25105;25106;25107;25108 25105 4 IDNDGDGFVTTEELK TPDESKERLGKIVDRIDNDGDGFVTTEELK IDNDGDGFVTTEELKTWIKRVQKRYIFDNV R I D L K T 0 0 1 3 0 0 2 2 0 1 1 1 0 1 0 0 2 0 0 1 0 0 15 0 1651.7577 V9HW95;Q15293 V9HW95 91 105 HEL-S-84;RCN1 Reticulocalbin-1 yes no 2 2.0058E-06 92.856 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5503000 5503000 0 5503000 5503000 0 0 0 0 6094 1757 6236 16113;16114 25109;25110 25109 2 IDNLDVNR SRLQRIHAEIKNSLKIDNLDVNRCIEALDE EIKNSLKIDNLDVNRCIEALDELASLQVTM K I D N R C 0 1 2 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 957.48796 O75475 O75475 365 372 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.013893 64.265 1 0.75278 0.65877 NaN 1 Median NaN NaN NaN 0 0 Median 0.75278 0.65877 NaN 1 0 Median 4202900 2355800 1847100 0 0 0 4202900 2355800 1847100 6095 1405 6237 16115 25111;25112 25112 2 IDNSNTPFLPK HAKNIIRPQLKFREKIDNSNTPFLPKIFIK FREKIDNSNTPFLPKIFIKPNAQKPLPQAL K I D P K I 0 0 2 1 0 0 0 0 0 1 1 1 0 1 2 1 1 0 0 0 0 0 11 0 1244.6401 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 191 201 EXOSC10 Exosome component 10 yes no 2 0.00013719 95.523 1 0.86788 0.93555 NaN 1 Median 0.86788 0.93555 NaN 1 0 Median NaN NaN NaN 0 0 Median 37686000 19177000 18508000 37686000 19177000 18508000 0 0 0 6096 1676 6238 16116 25113 25113 1 IDPLALVQAIER PDCANVKQWKGGPVKIDPLALVQAIERYLV PVKIDPLALVQAIERYLVVRGYGRVREDDE K I D E R Y 2 1 0 1 0 1 1 0 0 2 2 0 0 0 1 0 0 0 0 1 0 0 12 0 1336.7715 Q14669 Q14669 1289 1300 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.010522 46.352 1 1.3092 1.3044 NaN 1 Median 1.3092 1.3044 NaN 1 0 Median NaN NaN NaN 0 0 Median 7126800 2191000 4935700 7126800 2191000 4935700 0 0 0 6097 1736 6239 16117 25114;25115 25114 2 IDPNVLLDPADEK DLGVTIDLINPDTYRIDPNVLLDPADEKLL YRIDPNVLLDPADEKLLEEEIQAPTSSKRS R I D E K L 1 0 1 3 0 0 1 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 13 0 1437.7351 A0A024R0H6;Q8N7H5 A0A024R0H6 94 106 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0056231 57.003 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45059000 45059000 0 45059000 45059000 0 0 0 0 6098 46 6240 16118;16119 25116;25117 25117 2 IDRIEESDQGPYAIILAPTR AFLIPLLVWITTLPKIDRIEESDQGPYAII ESDQGPYAIILAPTRELAQQIEEETIKFGK K I D T R E 2 2 0 2 0 1 2 1 0 4 1 0 0 0 2 1 1 0 1 0 0 0 20 1 2256.175 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 439 458 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 3 2.1162E-06 58.373 2 2 0.78542 0.78302 18.131 4 Median 0.66865 0.73208 8.3565 2 0 Median 1.0145 0.91352 20.642 2 0 Median 51492000 28951000 22541000 43375000 24417000 18958000 8117000 4534000 3583000 6099 63 6241 16120;16121;16122;16123 25118;25119;25120;25121 25119 4 IDRTDAISEEK DETISNVPILILGNKIDRTDAISEEKLRVI LGNKIDRTDAISEEKLRVIFGLYGQTTGKG K I D E K L 1 1 0 2 0 0 2 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 11 1 1275.6307 Q8NG23;Q6FID4;Q5SQT9;Q9NR31;H0Y5E8 Q8NG23 136 146 SARA1;SAR1A GTP-binding protein SAR1a yes no 2 0.017687 83.862 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15762000 0 15762000 15762000 0 15762000 0 0 0 6100 1815 6242 16124 25122 25122 1 IDSDLGDAWAFFYK RKITKAREWFHRTVKIDSDLGDAWAFFYKF KIDSDLGDAWAFFYKFELQHGTEEQQEEVR K I D Y K F 2 0 0 3 0 0 0 1 0 1 1 1 0 2 0 1 0 1 1 0 0 0 14 0 1646.7617 O94906 O94906 870 883 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 3.0841E-14 128.01 2 0.58803 0.60843 17.288 2 Median 0.58803 0.60843 17.288 2 0 Median NaN NaN NaN 0 0 Median 21854000 13807000 8047000 21854000 13807000 8047000 0 0 0 6101 1418 6243 16125;16126 25123;25124;25125;25126;25127 25126 5 IDSIPHLNNSTPLVDPSVYGYGVQK GFVDALHRVRQIAAKIDSIPHLNNSTPLVD TPLVDPSVYGYGVQKRPLDDGVGNQLGALV K I D Q K R 0 0 2 2 0 1 0 2 1 2 2 1 0 0 3 3 1 0 2 3 0 0 25 0 2712.3759 A0A024R8A7;Q96I24 A0A024R8A7 33 57 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 3 0.040996 23.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6004800 0 6004800 6004800 0 6004800 0 0 0 6102 245 6244 16127 25128 25128 1 IDSLSAQLSQLQK LVGAAHEELQQSRIRIDSLSAQLSQLQKQL IRIDSLSAQLSQLQKQLAAKEAKLRDLEDS R I D Q K Q 1 0 0 1 0 3 0 0 0 1 3 1 0 0 0 3 0 0 0 0 0 0 13 0 1429.7777 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8 P02545 299 311 LMNA Prelamin-A/C;Lamin-A/C yes no 2 3.0129E-122 252.97 2 2 1.3253 1.3404 15.86 4 Median 1.3002 1.5176 1.3323 2 0 Median 1.3975 1.1577 4.4904 2 0 Median 702750000 308110000 394640000 621440000 275230000 346210000 81311000 32880000 48431000 6103 1440 6245 16128;16129;16130;16131 25129;25130;25131;25132;25133;25134;25135;25136;25137;25138 25132 10 IDSWENAEDFLEK VLERAKPEYISKTYKIDSWENAEDFLEKLA YKIDSWENAEDFLEKLAFRTGKLLKGGEPD K I D E K L 1 0 1 2 0 0 3 0 0 1 1 1 0 1 0 1 0 1 0 0 0 0 13 0 1594.7151 Q5T0F3;Q13823 Q5T0F3 412 424 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.00015285 88.187 2 2 1.0254 1.0343 3.7297 3 Median 0.9991 1.0068 4.7945 2 0 Median 1.3014 1.0343 NaN 1 0 Median 41786000 17990000 23795000 27442000 13220000 14223000 14343000 4770700 9572500 6104 1721 6246 16132;16133;16134;16135 25139;25140;25141;25142;25143;25144;25145 25141 7 IDTIEIITDR TEEHHLRDYFEEYGKIDTIEIITDRQSGKK EEYGKIDTIEIITDRQSGKKRGFGFVTFDD K I D D R Q 0 1 0 2 0 0 1 0 0 4 0 0 0 0 0 0 2 0 0 0 0 0 10 0 1187.6398 P22626;A0A087WUI2;I6L957;A0A024RA28 P22626 138 147 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 2.6362E-06 118.18 2 2 1.5973 1.6046 51.841 4 Median 2.153 2.524 3.0452 2 0 Median 1.1977 1.029 1.8061 2 0 Median 704640000 230050000 474590000 643770000 202060000 441700000 60877000 27987000 32890000 6105 1508 6247 16136;16137;16138;16139 25146;25147;25148;25149;25150;25151;25152;25153 25152 8 IDTMGTYHGMTLK DQERFKGKEETEGFKIDTMGTYHGMTLKSV FKIDTMGTYHGMTLKSVTEGASARKTQTPA K I D L K S 0 0 0 1 0 0 0 2 1 1 1 1 2 0 0 0 3 0 1 0 0 0 13 0 1466.6898 Q6P1J9;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 309 321 CDC73 Parafibromin yes no 3 0.0051425 40.278 1 2.1588 2.1807 NaN 1 Median 2.1588 2.1807 NaN 1 0 Median NaN NaN NaN 0 0 Median 26798000 8132500 18665000 26798000 8132500 18665000 0 0 0 6106 1851 6248 16140 25154 25154 1701;1702 1 IDTTSFLANLK TKGLLDNPISEKSTKIDTTSFLANLKLHTE KSTKIDTTSFLANLKLHTEDSRMKKEVNFS K I D L K L 1 0 1 1 0 0 0 0 0 1 2 1 0 1 0 1 2 0 0 0 0 0 11 0 1221.6605 Q8NG31;E9PPJ1;Q05C46 Q8NG31 203 213 CASC5 Protein CASC5 no no 2 0.00036511 84.213 1 1 0.98682 0.91118 9.4378 2 Median 0.82028 0.85236 NaN 1 0 Median 1.1872 0.97406 NaN 1 0 Median 16450000 7880300 8570200 11167000 5513300 5654100 5283100 2367000 2916100 6107 1928;1685 6249 16141;16142 25155;25156 25155 2 IDVAFVDR HSNVVILTTSNITEKIDVAFVDRADIKQYI TSNITEKIDVAFVDRADIKQYIGPPSAAAI K I D D R A 1 1 0 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 8 0 933.49198 Q15645 Q15645 305 312 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.039261 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14952000 14952000 0 14952000 14952000 0 0 0 0 6108 1763 6250 16143 25157 25157 1 IDVASIK EKPIVKPKEASTETKIDVASIKEKVKKAKN KEASTETKIDVASIKEKVKKAKNKKLGALT K I D I K E 1 0 0 1 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 7 0 744.43815 Q13601 Q13601 341 347 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.03384 63.306 1 1.0826 1.2201 NaN 1 Median 1.0826 1.2201 NaN 1 0 Median NaN NaN NaN 0 0 Median 75459000 35948000 39512000 75459000 35948000 39512000 0 0 0 6109 1717 6251 16144 25158 25158 1 IDVGEAEPR TVEKHPDADSLYVEKIDVGEAEPRTVVSGL SLYVEKIDVGEAEPRTVVSGLVQFVPKEEL K I D P R T 1 1 0 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 9 0 984.48762 A0A0S2Z4R1;P54577 A0A0S2Z4R1 392 400 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes no 2 0.038893 50.607 2 1 3.4218 2.9522 NaN 1 Median NaN NaN NaN 0 0 Median 3.4218 2.9522 NaN 1 0 Median 42524000 467650 42056000 40865000 0 40865000 1658500 467650 1190900 6110 567 6252 16145;16146;16147 25159;25160;25161;25162 25160 4 IDVLLQQIEELGSEGK PTGKNEEKIQVLTDKIDVLLQQIEELGSEG DVLLQQIEELGSEGKVEEAQGMMKLVEQLK K I D G K V 0 0 0 1 0 2 3 2 0 2 3 1 0 0 0 1 0 0 0 1 0 0 16 0 1769.9411 Q6PKC2;Q86Y74;B4DJ96;A8K3C5;J3KPP4;O95232 Q6PKC2 136 151 CROP;LUC7L3 Luc7-like protein 3 yes no 2 3.665E-12 117.98 2 0.89574 0.91174 3.7891 2 Median 0.89574 0.91174 3.7891 2 0 Median NaN NaN NaN 0 0 Median 23214000 12267000 10947000 23214000 12267000 10947000 0 0 0 6111 722 6253 16148;16149 25163;25164;25165;25166 25164 4 IDVSINECYDGSYAGNPQDIHR SRFIFNYVYHPKGARIDVSINECYDGSYAG CYDGSYAGNPQDIHRQPGFAFSRNGPVKRT R I D H R Q 1 1 2 3 1 1 1 2 1 3 0 0 0 0 1 2 0 0 2 1 0 0 22 0 2522.1132 J3QQW9;Q15022;A8K1U9 J3QQW9 464 485 SUZ12 Polycomb protein SUZ12 yes no 3 2.415E-16 107.06 2 2 1.3143 1.2263 31.715 4 Median 0.87252 0.90642 11.46 2 0 Median 1.8732 1.5506 1.8949 2 0 Median 75162000 35488000 39674000 42481000 24088000 18394000 32680000 11400000 21280000 6112 1336 6254 16150;16151;16152;16153 25167;25168;25169;25170;25171;25172 25169 6 IDYGEYMDK YQYVKKRSRIYLEGKIDYGEYMDKNNVRRQ IYLEGKIDYGEYMDKNNVRRQATTIIADNI K I D D K N 0 0 0 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 2 0 0 0 9 0 1132.4747 Q567R6;A4D1U3;Q04837;A0A0G2JLD8;E7EUY5;B7Z268 Q567R6 114 122 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 0.0029214 65.224 2 1.0721 1.0937 3.5421 2 Median 1.0721 1.0937 3.5421 2 0 Median NaN NaN NaN 0 0 Median 45488000 22115000 23374000 45488000 22115000 23374000 0 0 0 6113 666 6255 16154;16155 25173;25174;25175;25176 25176 518 4 IDYIAGLDSR IGLLARHLKATHGGRIDYIAGLDSRGFLFG THGGRIDYIAGLDSRGFLFGPSLAQELGLG R I D S R G 1 1 0 2 0 0 0 1 0 2 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1121.5717 H3BQB1;P07741;H3BQF1 H3BQB1 58 67 APRT Adenine phosphoribosyltransferase yes no 2 0.00067121 90.15 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70068000 0 70068000 66310000 0 66310000 3758400 0 3758400 6114 1302 6256 16156;16157;16158;16159;16160;16161 25177;25178;25179;25180;25181;25182;25183 25180 7 IEAGYIQTGDR VCFADQGSGFCITGKIEAGYIQTGDRLLAM ITGKIEAGYIQTGDRLLAMPPNETCTVKGI K I E D R L 1 1 0 1 0 1 1 2 0 2 0 0 0 0 0 0 1 0 1 0 0 0 11 0 1221.599 Q9NSX9;B7Z1K2;B7Z524;H0YDX7;J3QT46;D9YZV0;B3KNB9;A8K9E1;Q9Y450;H0YES5 Q9NSX9 22 32 DKFZp434G247;HBS1L HBS1-like protein yes no 2 0.0080859 51.436 1 1.3666 1.3613 NaN 1 Median 1.3666 1.3613 NaN 1 0 Median NaN NaN NaN 0 0 Median 16489000 7515600 8973700 16489000 7515600 8973700 0 0 0 6115 784 6257 16162 25184;25185;25186 25186 3 IEAINQAIANEYEVR KPLLKKPMGPAHWEKIEAINQAIANEYEVR IEAINQAIANEYEVRRKLLIKRLDVTVQSF K I E V R R 3 1 2 0 0 1 3 0 0 3 0 0 0 0 0 0 0 0 1 1 0 0 15 0 1731.8792 I6L9E8;Q8NCA5;E9PH82;B4DT23;B4DY25 I6L9E8 204 218 FAM98A Protein FAM98A yes no 2 4.7557E-22 144.57 2 1.3504 1.4861 1.7296 2 Median 1.3504 1.4861 1.7296 2 0 Median NaN NaN NaN 0 0 Median 92352000 38229000 54124000 92352000 38229000 54124000 0 0 0 6116 1324 6258 16163;16164 25187;25188;25189;25190;25191 25187 5 IEALQNHENESVYK EKLSIMIEECGGLDKIEALQNHENESVYKA KIEALQNHENESVYKASLSLIEKYFSVEEE K I E Y K A 1 0 2 0 0 1 3 0 1 1 1 1 0 0 0 1 0 0 1 1 0 0 14 0 1672.8057 Q7Z726;A8K7D9;P52292 Q7Z726 473 486 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2;3 3.0692E-14 143.42 5 2 1.0991 1.1752 48.506 6 Median 1.1095 1.2237 5.287 4 0 Median 0.6047 0.48232 5.6596 2 0 Median 322990000 158490000 164500000 300320000 143770000 156560000 22669000 14721000 7947100 6117 769 6259 16165;16166;16167;16168;16169;16170;16171 25192;25193;25194;25195;25196;25197;25198;25199;25200;25201;25202;25203 25198 12 IEANAGQLYLTGVVVLHK VYRVRNLSNPAKKFKIEANAGQLYLTGVVV NAGQLYLTGVVVLHKDVNVVVVEGGPKAQK K I E H K D 2 0 1 0 0 1 1 2 1 1 3 1 0 0 0 0 1 0 1 3 0 0 18 0 1924.0782 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 546 563 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 3 0.039282 15.893 1 0.77216 0.63127 NaN 1 Median NaN NaN NaN 0 0 Median 0.77216 0.63127 NaN 1 0 Median 2620700 1716400 904320 0 0 0 2620700 1716400 904320 6118 848 6260 16172 25204 25204 1 IEDFLER LDEGKMKLDYILGLKIEDFLERRLQTQVFK LDYILGLKIEDFLERRLQTQVFKLGLAKSI K I E E R R 0 1 0 1 0 0 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 920.46035 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 102 108 RPS9 40S ribosomal protein S9 yes no 2 0.0010043 117.93 2 2 0.89436 1.0582 21.378 3 Plateau 0.89436 1.0582 NaN 1 0 Median 0.84407 0.73181 2.6805 2 0 Median 636250000 423180000 213070000 516760000 357290000 159480000 119490000 65893000 53596000 6119 157 6261 16173;16174;16175;16176 25205;25206;25207;25208;25209;25210;25211;25212;25213 25209 9 IEDLEEGQQVIR KDLMHGLITLMLDSRIEDLEEGQQVIRSVN DSRIEDLEEGQQVIRSVNLLVVKVLEKSDQ R I E I R S 0 1 0 1 0 2 3 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1427.7256 Q14008;Q8IYN5 Q14008 1655 1666 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.00021042 105.52 1 1 1.5439 1.479 5.1256 2 Median 1.5058 1.5336 NaN 1 0 Median 1.5829 1.4264 NaN 1 0 Median 20609000 6742400 13867000 18561000 5981700 12579000 2048400 760670 1287700 6120 1725 6262 16177;16178 25214;25215;25216;25217 25214 4 IEDLENEIEEVK KTPEQIMQEKQIEAKIEDLENEIEEVKVAF EAKIEDLENEIEEVKVAFEIKKLALDSVLM K I E V K V 0 0 1 1 0 0 5 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1458.709 B3KVZ3;A0A0S2Z5T0;Q9H3R5 B3KVZ3 82 93 CENPH Centromere protein H yes no 2 0.00094564 73.951 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6121 585 6263 16179;16180;16181 25218;25219;25220 25220 3 IEDLSQQAQLAAAEK KSPASDTYIVFGEAKIEDLSQQAQLAAAEK IEDLSQQAQLAAAEKFKVQGEAV_______ K I E E K F 4 0 0 1 0 3 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 15 0 1613.8261 F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3;B4DDI8 F8W1N5 49 63 NACA;hCG_2016482 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 2 4.9267E-32 149.41 2 1 1.4443 1.1407 NaN 1 Median NaN NaN NaN 0 0 Median 1.4443 1.1407 NaN 1 0 Median 60795000 2358400 58437000 55533000 0 55533000 5262400 2358400 2904000 6122 324 6264 16182;16183;16184 25221;25222;25223;25224 25223 4 IEDNNTLVFIVDVK AIIKFPLTTESAMKKIEDNNTLVFIVDVKA KIEDNNTLVFIVDVKANKHQIKQAVKKLYD K I E V K A 0 0 2 2 0 0 1 0 0 2 1 1 0 1 0 0 1 0 0 3 0 0 14 0 1617.8614 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 92 105 RPL23A 60S ribosomal protein L23a yes no 2 0.00011813 82.171 1 2 0.83889 0.68292 15.214 3 Median 0.545 0.59189 NaN 1 0 Median 0.90555 0.74018 11.387 2 0 Median 105100000 60785000 44312000 46449000 28546000 17903000 58647000 32239000 26409000 6123 796 6265 16185;16186;16187 25225;25226;25227;25228;25229;25230;25231 25225 7 IEDRLPELEQLER ______________________________ ERIEDRLPELEQLERIGLFSHAEIKAIIKK R I E E R I 0 2 0 1 0 1 4 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 13 1 1638.8577 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 9 21 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 3 3.2082E-14 124.09 2 1 1.0066 1.1579 8.4686 3 Median 0.996 1.1148 5.3708 2 0 Median 1.5194 1.2709 NaN 1 0 Median 153590000 70655000 82939000 139090000 64513000 74578000 14503000 6141700 8361200 6124 925 6266 16188;16189;16190 25232;25233;25234;25235;25236;25237 25233 6 IEDSGENLETEPLESQDR IPRVPSLSVPWLQDRIEDSGENLETEPLES SGENLETEPLESQDRELLDTSFEDLSKPKR R I E D R E 0 1 1 2 0 1 5 1 0 1 2 0 0 0 1 2 1 0 0 0 0 0 18 0 2059.9182 P78345 P78345 212 229 RPP38 Ribonuclease P protein subunit p38 yes yes 2 6.8841E-06 107.99 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2079600 2079600 0 2079600 2079600 0 0 0 0 6125 1662 6267 16191;16192;16193 25238;25239;25240 25240 3 IEDSTGLNRPGPAPLSSR ASENGLEDIDRILERIEDSTGLNRPGPAPL STGLNRPGPAPLSSRKHVLYVEHRHLNPDT R I E S R K 1 2 1 1 0 0 1 2 0 1 2 0 0 0 3 3 1 0 0 0 0 0 18 1 1865.9595 Q9BQ70;Q9H7D3;H3BSP8;H3BTU3;H3BQ53;H3BS87;H3BMJ8 Q9BQ70 157 174 TCF25 Transcription factor 25 yes no 3 0.00012454 33.836 1 1.3797 1.4918 NaN 1 Median 1.3797 1.4918 NaN 1 0 Median NaN NaN NaN 0 0 Median 20893000 8889800 12004000 20893000 8889800 12004000 0 0 0 6126 1996 6268 16194 25241 25241 1 IEDVGSDEEDDSGK GEKEEEDKDDEEKPKIEDVGSDEEDDSGKD KIEDVGSDEEDDSGKDKKKKTKKIKEKYID K I E G K D 0 0 0 4 0 0 3 2 0 1 0 1 0 0 0 2 0 0 0 1 0 0 14 0 1493.6005 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;Q58FF8 B4DMA2 212 225 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 1.5063E-29 153.95 2 1 2.8136 3.18 40.538 3 Plateau 2.7633 2.9703 9.6499 2 0 Median 1.8839 1.4866 NaN 1 0 Median 121460000 31473000 89990000 117380000 30008000 87367000 4087900 1465600 2622400 6127 379;1800 6269 16195;16196;16197 25242;25243;25244;25245;25246;25247 25243 6 IEDVPAPSTSADK TATAAVAAELVSADKIEDVPAPSTSADKVE DKIEDVPAPSTSADKVESLDVDSEAKKLLG K I E D K V 2 0 0 2 0 0 1 0 0 1 0 1 0 0 2 2 1 0 0 1 0 0 13 0 1328.646 Q53H03;P49321;E9PI86;O95138;Q5T626;Q6PJY7;Q5T624;E9PRH9;E9PPR5;E9PQG5;E9PAU3;E9PKR5;E9PNB5 Q53H03 21 33 NASP Nuclear autoantigenic sperm protein yes no 2 0.0043798 61.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8388600 0 8388600 8388600 0 8388600 0 0 0 6128 1579 6270 16198 25248;25249 25249 2 IEDVTPIPSDSTR SALRALARSGMKIGRIEDVTPIPSDSTRRK GRIEDVTPIPSDSTRRKGGRRGRRL_____ R I E T R R 0 1 0 2 0 0 1 0 0 2 0 0 0 0 2 2 2 0 0 1 0 0 13 0 1428.7096 P62263 P62263 129 141 RPS14 40S ribosomal protein S14 yes yes 2 6.9464E-14 134.98 2 4 0.97098 1.0056 2.9447 4 Median 0.85627 1.0111 1.1899 2 0 Median 1.126 0.98098 3.9293 2 0 Median 2216900000 1146600000 1070300000 1746100000 922840000 823210000 470820000 223770000 247050000 6129 1638 6271 16199;16200;16201;16202;16203;16204 25250;25251;25252;25253;25254;25255;25256;25257;25258;25259;25260;25261;25262;25263;25264;25265;25266;25267;25268;25269;25270 25256 21 IEDVTPIPSDSTRR SALRALARSGMKIGRIEDVTPIPSDSTRRK RIEDVTPIPSDSTRRKGGRRGRRL______ R I E R R K 0 2 0 2 0 0 1 0 0 2 0 0 0 0 2 2 2 0 0 1 0 0 14 1 1584.8107 P62263 P62263 129 142 RPS14 40S ribosomal protein S14 yes yes 3 0.008535 29.981 2 1.3155 1.1569 5.9787 2 Median NaN NaN NaN 0 0 Median 1.3155 1.1569 5.9787 2 0 Median 12305000 5076700 7228400 0 0 0 12305000 5076700 7228400 6130 1638 6272 16205;16206 25271;25272;25273;25274;25275 25274 5 IEDYFPEFAR KQDLLAEKVLAGKSKIEDYFPEFARYTTPE AGKSKIEDYFPEFARYTTPEDATPEPGEDP K I E A R Y 1 1 0 1 0 0 2 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 10 0 1285.5979 Q5FWY2;A0A0S2Z3S5;A0A0S2Z3H8;P63092;Q5JWF2;B0AZR9;Q14455;A0A0A0MR13;O60726 Q5FWY2 294 303 GNAS;GSA Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 2 0.0059051 67.563 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8691900 8691900 0 8691900 8691900 0 0 0 0 6131 549 6273 16207;16208 25276;25277 25276 2 IEEALMDPGRQPESADDFDR ERELEKQKAEKELSRIEEALMDPGRQPESA MDPGRQPESADDFDRLVLSSPNSSILWLQY R I E D R L 2 2 0 4 0 1 3 1 0 1 1 0 1 1 2 1 0 0 0 0 0 0 20 1 2290.0172 Q14690 Q14690 1591 1610 PDCD11 Protein RRP5 homolog yes yes 3 9.6272E-14 109.03 2 2 1.4157 1.4432 7.9693 4 Median 1.2626 1.4114 6.7192 2 0 Median 1.6865 1.5101 9.9833 2 0 Median 104820000 45453000 59365000 97972000 42530000 55442000 6846900 2923800 3923100 6132 1741 6274;6275 16209;16210;16211;16212 25278;25279;25280;25281;25282;25283;25284;25285 25279 1581 8 IEEDFPHIR VAEAALQIFKNTGSKIEEDFPHIRSALLPV KNTGSKIEEDFPHIRSALLPVLHHKSKKGP K I E I R S 0 1 0 1 0 0 2 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 9 0 1154.572 Q9NTI5;B7Z5S1 Q9NTI5 699 707 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.0063362 41.876 2 0.619 0.63381 5.9459 2 Median 0.619 0.63381 5.9459 2 0 Median NaN NaN NaN 0 0 Median 29823000 17131000 12693000 29823000 17131000 12693000 0 0 0 6133 2069 6276 16213;16214 25286;25287;25288 25287 3 IEEGTYGVVYR LQGCRSVEEFQCLNRIEEGTYGVVYRAKDK CLNRIEEGTYGVVYRAKDKKTDEIVALKRL R I E Y R A 0 1 0 0 0 0 2 2 0 1 0 0 0 0 0 0 1 0 2 2 0 0 11 0 1284.635 Q96CA8;Q6P5Y5;Q4VBY6;A4VCI5;Q5QPR4;J3QR29;B4E3D9;A0A0D9SEI3;Q5QPR3;B7ZVY7;A0A0D9SER5;A0A0D9SEN2;J3QR44;Q9UQ88;P21127;B4E0M9;B4E0N4 Q96CA8 113 123 CDC2L2;CDC2L1;CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 2 0.019486 53.751 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6134 520 6277 16215 25289 25289 1 IEEIPLDQVDIDK ELLECLSPATSRTFRIEEIPLDQVDIDKEN FRIEEIPLDQVDIDKENEMLVTVAHFHKEV R I E D K E 0 0 0 3 0 1 2 0 0 3 1 1 0 0 1 0 0 0 0 1 0 0 13 0 1525.7876 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8 Q93009 972 984 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0085865 43.77 2 0.68955 0.75029 0.82978 2 Median 0.68955 0.75029 0.82978 2 0 Median NaN NaN NaN 0 0 Median 82986000 47043000 35943000 82986000 47043000 35943000 0 0 0 6135 1954 6278 16216;16217 25290;25291;25292 25291 3 IEELEALLQEAR LTSFYQEEIQERDEKIEELEALLQEARQQS DEKIEELEALLQEARQQSVAHQQSGSELAL K I E A R Q 2 1 0 0 0 1 4 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 12 0 1412.7511 O95235 O95235 648 659 KIF20A Kinesin-like protein KIF20A yes yes 2 3.7811E-29 164.64 3 3 1.1069 0.92644 20.692 5 Median 0.65781 0.73004 4.0431 2 0 Median 1.2388 1.0341 10.993 3 0 Median 152610000 86753000 65856000 110770000 67253000 43520000 41836000 19500000 22335000 6136 1421 6279 16218;16219;16220;16221;16222;16223 25293;25294;25295;25296;25297;25298;25299;25300;25301;25302;25303;25304;25305;25306;25307;25308 25294 16 IEELLSGENR VLTFVLPTEQFHLGKIEELLSGENRGPILL FHLGKIEELLSGENRGPILLPYQFRMEEIE K I E N R G 0 1 1 0 0 0 3 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1158.5881 Q9NY93;Q53HB9;H7C3E9;H7BZN7 Q9NY93 400 409 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0038105 62.823 2 1.015 1.146 4.9514 2 Median 1.015 1.146 4.9514 2 0 Median NaN NaN NaN 0 0 Median 138560000 71830000 66727000 138560000 71830000 66727000 0 0 0 6137 2081 6280 16224;16225 25309;25310 25310 1 IEELQLIVNDK EGKAGSGLRQYYLSKIEELQLIVNDKSQNL YLSKIEELQLIVNDKSQNLRRLQAQRNELN K I E D K S 0 0 1 1 0 1 2 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1312.7238 Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QQM1;J3QSE0 Q59GS3 24 34 PSMC5 26S protease regulatory subunit 8 yes no 2 7.1656E-08 108.43 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21433000 0 21433000 21433000 0 21433000 0 0 0 6138 608 6281 16226;16227;16228 25311;25312;25313 25311 3 IEENSLKEEESIEGEK PNTPAPVPPAEDGIKIEENSLKEEESIEGE EENSLKEEESIEGEKEVKSTAPETAIECTQ K I E E K E 0 0 1 0 0 0 7 1 0 2 1 2 0 0 0 2 0 0 0 0 0 0 16 1 1861.8793 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1559 1574 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 3.5295E-05 81.428 3 2 1.4258 1.4239 45.586 4 Median 0.82931 0.96481 2.5936 2 0 Median 2.4977 2.1219 3.9647 2 0 Median 71562000 27210000 44352000 37550000 17767000 19784000 34012000 9443000 24569000 6139 515 6282 16229;16230;16231;16232;16233 25314;25315;25316;25317;25318;25319;25320 25315 7 IEESDQGPYAIILAPTR IPLLVWITTLPKIDRIEESDQGPYAIILAP ESDQGPYAIILAPTRELAQQIEEETIKFGK R I E T R E 2 1 0 1 0 1 2 1 0 3 1 0 0 0 2 1 1 0 1 0 0 0 17 0 1871.9629 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 442 458 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0061157 64.65 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8402000 8402000 0 8402000 8402000 0 0 0 0 6140 63 6283 16234;16235 25321;25322;25323;25324 25322 4 IEESITEDLSLADLMPR DFEGTDEPIFGKKPRIEESITEDLSLADLM ESITEDLSLADLMPRVKVQSVETVEGCTHE R I E P R V 1 1 0 2 0 0 3 0 0 2 3 0 1 0 1 2 1 0 0 0 0 0 17 0 1930.9558 P42285;A8K6I4;H0Y8U3 P42285 82 98 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.0030924 55.261 1 1.2056 1.216 NaN 1 Median 1.2056 1.216 NaN 1 0 Median NaN NaN NaN 0 0 Median 17617000 7918300 9699100 17617000 7918300 9699100 0 0 0 6141 1563 6284 16236 25325 25325 1317 0 IEEVLSGVLDTELR AASARSLPNEEIVQKIEEVLSGVLDTELRY KIEEVLSGVLDTELRYKPDLKEGSRKSRCV K I E L R Y 0 1 0 1 0 0 3 1 0 1 3 0 0 0 0 1 1 0 0 2 0 0 14 0 1571.8407 P18583;D3DSF7;Q6ZRV7;J3QSZ5;Q3SWV4;A0JLP4 P18583 65 78 SON Protein SON yes no 2 3.8827E-06 97.214 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16221000 0 16221000 14567000 0 14567000 1653300 0 1653300 6142 1499 6285 16237;16238;16239 25326;25327;25328;25329;25330 25329 5 IEEVPELPLVVEDK AASALPALVMSKGHRIEEVPELPLVVEDKV RIEEVPELPLVVEDKVEGYKKTKEAVLLLK R I E D K V 0 0 0 1 0 0 4 0 0 1 2 1 0 0 2 0 0 0 0 3 0 0 14 0 1607.8658 P36578;Q59GY2;H3BM89;B4DFI6;Q53G74;B4DMJ2 P36578 144 157 RPL4 60S ribosomal protein L4 yes no 2 0.00010959 83.617 2 2 0.97765 0.99024 10.078 4 Median 0.91078 1.0851 2.5963 2 0 Median 1.0413 0.91341 1.077 2 0 Median 2896100000 1489100000 1407000000 2265200000 1177800000 1087400000 630900000 311250000 319650000 6143 1548 6286 16240;16241;16242;16243 25331;25332;25333;25334;25335;25336;25337;25338;25339;25340;25341;25342;25343;25344;25345;25346;25347 25332 17 IEEVPELPLVVEDKVEGYK AASALPALVMSKGHRIEEVPELPLVVEDKV PELPLVVEDKVEGYKKTKEAVLLLKKLKAW R I E Y K K 0 0 0 1 0 0 5 1 0 1 2 2 0 0 2 0 0 0 1 4 0 0 19 1 2184.1566 P36578;Q59GY2;H3BM89;B4DFI6;Q53G74;B4DMJ2 P36578 144 162 RPL4 60S ribosomal protein L4 yes no 3 0.0053511 24.407 1 1.0821 0.91904 NaN 1 Median NaN NaN NaN 0 0 Median 1.0821 0.91904 NaN 1 0 Median 26402000 12924000 13478000 0 0 0 26402000 12924000 13478000 6144 1548 6287 16244 25348 25348 1 IEEVPELPLVVEDKVEGYKK AASALPALVMSKGHRIEEVPELPLVVEDKV ELPLVVEDKVEGYKKTKEAVLLLKKLKAWN R I E K K T 0 0 0 1 0 0 5 1 0 1 2 3 0 0 2 0 0 0 1 4 0 0 20 2 2312.2515 P36578;Q59GY2;H3BM89;B4DFI6;Q53G74;B4DMJ2 P36578 144 163 RPL4 60S ribosomal protein L4 yes no 4 0.037125 18.353 2 1.1915 1.1468 10.3 2 Median NaN NaN NaN 0 0 Median 1.1915 1.1468 10.3 2 0 Median 11284000 5502300 5782100 0 0 0 11284000 5502300 5782100 6145 1548 6288 16245;16246 25349;25350 25349 1 IEEVPELTLPIIK GMLVNHLSKRHPDMKIEEVPELTLPIIKPN MKIEEVPELTLPIIKPNRDYFCQYCDKVYK K I E I K P 0 0 0 0 0 0 3 0 0 3 2 1 0 0 2 0 1 0 0 1 0 0 13 0 1492.8752 B7ZL72;E9PLV1;Q9NQV6;E9PRS0 B7ZL72 665 677 PRDM10 PR domain zinc finger protein 10 yes no 2 0.0013051 58.37 2 0.6974 0.70194 0.49716 2 Median 0.6974 0.70194 0.49716 2 0 Median NaN NaN NaN 0 0 Median 12589000 6501600 6087500 12589000 6501600 6087500 0 0 0 6146 1113 6289 16247;16248 25351;25352;25353 25353 3 IEFEPASK GKLLASSAKKVLLQKIEFEPASKSFSYQLE KKVLLQKIEFEPASKSFSYQLEALKSKYVL K I E S K S 1 0 0 0 0 0 2 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 919.4651 A0A024R8V6;Q9P275;A0A075B784;E9PEW0;Q9H9C5;K7ELR5;Q8IXW9;K7EQS0;K7EPT1;K7ERC1;K7ELT3;K7EJI3 A0A024R8V6 40 47 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.0395 47.574 1 1.5257 1.1965 NaN 1 Median NaN NaN NaN 0 0 Median 1.5257 1.1965 NaN 1 0 Median 3799100 1750100 2048900 0 0 0 3799100 1750100 2048900 6147 260 6290 16249 25354 25354 1 IEFGGNIK TKSSMEKPVAQEPERIEFGGNIKSSHEITE VAQEPERIEFGGNIKSSHEITEKSTEETEK R I E I K S 0 0 1 0 0 0 1 2 0 2 0 1 0 1 0 0 0 0 0 0 0 0 8 0 876.47052 Q96T23;H0YER1;H0YCN2 Q96T23 351 358 RSF1 Remodeling and spacing factor 1 yes no 2 0.032434 51.787 2 0.46672 0.50245 NaN 1 Median 0.46672 0.50245 NaN 1 0 Median NaN NaN NaN 0 0 Median 62937000 50410000 12527000 62937000 50410000 12527000 0 0 0 6148 1991 6291 16250;16251 25355;25356 25356 2 IEFLQSHENQEIYQK NPYCGLIEEAYGLDKIEFLQSHENQEIYQK IEFLQSHENQEIYQKAFDLIEHYFGVEDDD K I E Q K A 0 0 1 0 0 3 3 0 1 2 1 1 0 1 0 1 0 0 1 0 0 0 15 0 1904.9268 B4DII5;B4DWX3;O60684;O15131;Q5BKZ2;P52294;B3KXZ2;B3KWR2 B4DII5 476 490 KPNA6;KPNA5;KPNA1 Importin subunit alpha;Importin subunit alpha-7;Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed no no 3 9.2842E-08 106.52 2 1 1.323 1.45 35.669 3 Median 1.337 1.4518 0.17432 2 0 Median 0.99165 0.78268 NaN 1 0 Median 85475000 38224000 47251000 79492000 35407000 44085000 5982800 2816800 3166000 6149 980;1600 6292 16252;16253;16254 25357;25358;25359;25360 25358 4 IEFSLPDLEGR TLDPALMRPGRLDRKIEFSLPDLEGRTHIF LDRKIEFSLPDLEGRTHIFKIHARSMSVER K I E G R T 0 1 0 1 0 0 2 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 11 0 1274.6507 A0A140VK70;P35998;Q75L23 A0A140VK70 341 351 PSMC2 26S protease regulatory subunit 7 yes no 2 2.379E-05 102.61 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6907000 0 6907000 6907000 0 6907000 0 0 0 6150 620 6293 16255 25361 25361 1 IEFVVVGPEAPLAAGIVGNLR ISDHTALAQFCKEKKIEFVVVGPEAPLAAG GPEAPLAAGIVGNLRSAGVQCFGPTAEAAQ K I E L R S 3 1 1 0 0 0 2 3 0 2 2 0 0 1 2 0 0 0 0 4 0 0 21 0 2120.1994 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;C9JZG2;C9JKQ7 Q3B7A7 67 87 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 2.8762E-11 95.651 2 2.3993 2.7139 11.856 2 Median 2.3993 2.7139 11.856 2 0 Median NaN NaN NaN 0 0 Median 118020000 35919000 82104000 118020000 35919000 82104000 0 0 0 6151 1507 6294 16256;16257 25362;25363 25363 2 IEGDETSTEAATR RADQFEYVMYGKVYRIEGDETSTEAATRLS YRIEGDETSTEAATRLSAYVSYGGLLMRLQ R I E T R L 2 1 0 1 0 0 3 1 0 1 0 0 0 0 0 1 3 0 0 0 0 0 13 0 1378.6212 C9JLU1;P52434 C9JLU1 99 111 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 2 0.0004054 91.961 1 0.99489 1.0268 NaN 1 Median 0.99489 1.0268 NaN 1 0 Median NaN NaN NaN 0 0 Median 20006000 11929000 8077400 20006000 11929000 8077400 0 0 0 6152 1138 6295 16258 25364 25364 0 IEGDMIVCAAYAHELPK RVTNRDIICQIAYARIEGDMIVCAAYAHEL GDMIVCAAYAHELPKYGVKVGLTNYAAAYC R I E P K Y 3 0 0 1 1 0 2 1 1 2 1 1 1 0 1 0 0 0 1 1 0 0 17 0 1915.9172 A2RUM7;P46777;Q59GX9;B3KTM6;Q9BUV4;Q5T7N0 A2RUM7 69 85 RPL5 60S ribosomal protein L5 yes no 3 1.7876E-18 127.61 4 6 1.0323 0.83673 52.296 10 Median 1.3807 1.6599 8.0072 4 0 Linear 0.75603 0.60749 27.522 6 0 Median 559280000 241430000 317850000 491880000 202530000 289350000 67403000 38905000 28498000 6153 653 6296;6297 16259;16260;16261;16262;16263;16264;16265;16266;16267;16268 25365;25366;25367;25368;25369;25370;25371;25372;25373;25374;25375;25376;25377;25378;25379;25380 25367 507 16 IEGDPQGVQQAK SVRIPPDSEKSNLIRIEGDPQGVQQAKREL LIRIEGDPQGVQQAKRELLELASRMENERT R I E A K R 1 0 0 1 0 3 1 2 0 1 0 1 0 0 1 0 0 0 0 1 0 0 12 0 1268.6361 A0A024R4E5;Q00341;B2R5V9;H0Y394;Q6ZS03;Q96CF6 A0A024R4E5 483 494 HDLBP Vigilin yes no 2 1.0524E-08 122.96 1 1.5762 1.6301 NaN 1 Median 1.5762 1.6301 NaN 1 0 Median NaN NaN NaN 0 0 Median 11389000 4646600 6742200 11389000 4646600 6742200 0 0 0 6154 154 6298 16269 25381;25382 25382 2 IEGNLIFDPNNYLPK SKSISLPSLDLVSAKIEGNLIFDPNNYLPK IEGNLIFDPNNYLPKESMLKTTLKVFGFAS K I E P K E 0 0 3 1 0 0 1 1 0 2 2 1 0 1 2 0 0 0 1 0 0 0 15 0 1745.8988 CON__ENSEMBL:ENSBTAP00000032840;Q7Z7Q0;A8MUN2;E1A689;C0JYY2;P04114;A8K479 CON__ENSEMBL:ENSBTAP00000032840 652 666 APOB Apolipoprotein B-100;Apolipoprotein B-48 no no 2 0.00029571 75.695 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4708400 4708400 0 4708400 4708400 0 0 0 0 + 6155 1146;1123 6299 16270 25383;25384 25384 2 IEGVYAR KRGLRNQREHTALLKIEGVYARDETEFYLG REHTALLKIEGVYARDETEFYLGKRCAYVY K I E A R D 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 806.42865 P18077;F8WBS5;F8WB72;C9K025 P18077 30 36 RPL35A 60S ribosomal protein L35a yes no 2 0.026711 76.847 2 2 0.86003 0.76805 18.066 3 Median 0.86003 1.0053 NaN 1 0 Median 0.85953 0.74012 5.2401 2 0 Median 922000000 353020000 568980000 858480000 318570000 539910000 63522000 34444000 29077000 6156 1497 6300 16271;16272;16273;16274 25385;25386;25387;25388;25389 25386 5 IEGYEDQVLITEHGDLGNSR HAFAQYNMDQFTPVKIEGYEDQVLITEHGD DQVLITEHGDLGNSRFLDPRNKISFKFDHL K I E S R F 0 1 1 2 0 1 3 3 1 2 2 0 0 0 0 1 1 0 1 1 0 0 20 0 2244.0659 A8K0T9;A0A024R0E5;P52907 A8K0T9 67 86 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 3 3.0928E-13 103.1 3 2 1.7904 1.7055 19.864 4 Median 1.3313 1.4082 14.995 2 0 Median 2.2666 1.9138 4.1976 2 0 Median 95232000 37534000 57698000 83216000 34019000 49197000 12017000 3515700 8500800 6157 43 6301 16275;16276;16277;16278;16279 25390;25391;25392;25393;25394;25395;25396;25397;25398 25394 9 IEHLIGK AITFVTQYDVELFQRIEHLIGKKLPGFPTQ YDVELFQRIEHLIGKKLPGFPTQDDEVMML R I E G K K 0 0 0 0 0 0 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 7 0 808.48069 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 371 377 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2 0.011777 107.43 2 1.1317 1.2785 8.3297 2 Median 1.1317 1.2785 8.3297 2 0 Median NaN NaN NaN 0 0 Median 269710000 124980000 144730000 269710000 124980000 144730000 0 0 0 6158 313 6302 16280;16281 25399;25400;25401;25402 25399 4 IEHSFWR DMQNRLNKVIKSVGKIEHSFWRSFHTERKT KVIKSVGKIEHSFWRSFHTERKTEPATGFI K I E W R S 0 1 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 1 0 0 0 0 7 0 973.477 Q16531;B4DSA8;B4DZP5 Q16531 1068 1074 DDB1 DNA damage-binding protein 1 yes no 3 0.028878 37.021 1 0.4981 0.49337 NaN 1 Median 0.4981 0.49337 NaN 1 0 Median NaN NaN NaN 0 0 Median 15573000 11683000 3890200 15573000 11683000 3890200 0 0 0 6159 1770 6303 16282 25403 25403 1 IEIDPQFQVVR IQEVTINQNLLTPLKIEIDPQFQVVRTQET TPLKIEIDPQFQVVRTQETQEIRTLNNQFA K I E V R T 0 1 0 1 0 2 1 0 0 2 0 0 0 1 1 0 0 0 0 2 0 0 11 0 1342.7245 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 98 108 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.006292 63.816 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1077600 1077600 0 0 0 0 1077600 1077600 0 + 6160 1178 6304 16283 25404 25404 1 IEIESFYEGEDFSETLTR VEKAKRALSSQHQARIEIESFYEGEDFSET ESFYEGEDFSETLTRAKFEELNMDLFRSTM R I E T R A 0 1 0 1 0 0 5 1 0 2 1 0 0 2 0 2 2 0 1 0 0 0 18 0 2163.9848 V9HWB4;P11021 V9HWB4 307 324 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.024871 35.737 1 1.3449 1.3364 NaN 1 Median 1.3449 1.3364 NaN 1 0 Median NaN NaN NaN 0 0 Median 7418900 4190000 3229000 7418900 4190000 3229000 0 0 0 6161 1466 6305 16284 25405 25405 0 IEIHEQEAILHNFSSTNPTQVNGSVIDEPVR DIRIQLPVVSKQHCKIEIHEQEAILHNFSS NPTQVNGSVIDEPVRLKHGDVITIIDRSFR K I E V R L 1 1 3 1 0 2 4 1 2 4 1 0 0 1 2 3 2 0 0 3 0 0 31 0 3472.7223 P46013 P46013 51 81 MKI67 Antigen KI-67 yes yes 3;4 7.1568E-37 111.89 2 3 3.119 2.5905 17.459 5 Median 1.7641 1.9943 5.6378 2 0 Median 3.1589 2.7023 4.8978 3 0 Median 494210000 145200000 349010000 234090000 83547000 150540000 260120000 61649000 198470000 6162 1569 6306 16285;16286;16287;16288;16289 25406;25407;25408;25409;25410;25411;25412;25413 25412 8 IEIHYAK YGESNLVAEPQKVNKIEIHYAKTAKKMDMK AEPQKVNKIEIHYAKTAKKMDMKKLKQSMW K I E A K T 1 0 0 0 0 0 1 0 1 2 0 1 0 0 0 0 0 0 1 0 0 0 7 0 872.4756 A8K4T8;Q15003;B4DRG7;E9PHA2;H7C415 A8K4T8 631 637 NCAPH Condensin complex subunit 2 yes no 2 0.037563 60.788 2 1.6233 1.3305 0.82041 2 Median NaN NaN NaN 0 0 Median 1.6233 1.3305 0.82041 2 0 Median 61229000 23096000 38132000 0 0 0 61229000 23096000 38132000 6163 740 6307 16290;16291 25414;25415;25416;25417 25414 4 IEINQTGTTLYYQPGLLYGGSVEHDCSVLR ASFIRLLDKITNGSRIEINQTGTTLYYQPG LLYGGSVEHDCSVLRGIGYYLESLLCLAPF R I E L R G 0 1 1 1 1 2 2 4 1 2 4 0 0 0 1 2 3 0 3 2 0 0 30 0 3382.6504 Q9Y2P8;Q5VYW8 Q9Y2P8 64 93 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 3 9.2729E-24 98.236 2 2 1.0913 1.0321 21.323 4 Median 0.7907 0.8286 27.722 2 0 Median 1.2586 1.0576 0.12577 2 0 Median 77450000 38053000 39397000 36682000 19960000 16722000 40768000 18093000 22675000 6164 2125 6308 16292;16293;16294;16295 25418;25419;25420;25421;25422;25423;25424;25425 25423 8 IEISELNR QITAGRHGDSVRNSKIEISELNRVIQRLRS DSVRNSKIEISELNRVIQRLRSEIDNVKKQ K I E N R V 0 1 1 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 8 0 972.52401 CON__P35908;P35908;H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 396 403 KRT2;KRT1 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1 no no 2 6.1641E-05 120.62 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2207600000 2207600000 0 2105000000 2105000000 0 102610000 102610000 0 + 6165 1308;1309;1166 6309 16296;16297;16298;16299 25426;25427;25428;25429;25430;25431;25432;25433;25434 25429 9 IEISSPCCPR RPISSCSQRRGPKCRIEISSPCCPRQVPPQ GPKCRIEISSPCCPRQVPPQRCPVEIPPIR R I E P R Q 0 1 0 0 2 0 1 0 0 2 0 0 0 0 2 2 0 0 0 0 0 0 10 0 1217.5533 Q5T749 Q5T749 327 336 KPRP Keratinocyte proline-rich protein yes yes 2 0.015553 57.598 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3677400 3677400 0 0 0 0 3677400 3677400 0 6166 1824 6310 16300;16301 25435;25436 25436 2 IELEEMGPSLDLVLR SYKLLLKKSGCRTPRIELEEMGPSLDLVLR IELEEMGPSLDLVLRRTHLASDDLYKLSMK R I E L R R 0 1 0 1 0 0 3 1 0 1 4 0 1 0 1 1 0 0 0 1 0 0 15 0 1712.9019 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 212 226 RPF2 Ribosome production factor 2 homolog yes no 2 8.7145E-12 117.23 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59357000 0 59357000 59357000 0 59357000 0 0 0 6167 773 6311;6312 16302;16303 25437;25438 25437 605 2 IELEPPDK SSVFKGISVNAEQVRIELEPPDKAKPLGTV VNAEQVRIELEPPDKAKPLGTVQQKRRQKM R I E D K A 0 0 0 1 0 0 2 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 8 0 939.49131 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8 B2RWN5 1163 1170 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.011482 69.825 2 0.65037 0.73301 NaN 1 Median 0.65037 0.73301 NaN 1 0 Median NaN NaN NaN 0 0 Median 75649000 46362000 29287000 75649000 46362000 29287000 0 0 0 6168 897 6313 16304;16305 25439;25440 25439 2 IELPELFDR ARGLFKDFFPETGTKIELPELFDRGTASFP PETGTKIELPELFDRGTASFPQTIYCGFDP K I E D R G 0 1 0 1 0 0 2 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 9 0 1130.5972 H0YHS6;Q9Y2Z4 H0YHS6 33 41 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 2 0.004107 78.334 2 2 1.3118 1.2111 59.382 4 Median 1.9976 2.0297 13.617 2 0 Median 0.84639 0.73659 10.906 2 0 Median 30642000 11895000 18746000 25514000 9264900 16249000 5127100 2630200 2496900 6169 1293 6314 16306;16307;16308;16309 25441;25442;25443;25444;25445 25441 5 IELWEQEHSK LQKMLPKLEEELKARIELWEQEHSKAFMVN ELKARIELWEQEHSKAFMVNGQKFMEYVAE R I E S K A 0 0 0 0 0 1 3 0 1 1 1 1 0 0 0 1 0 1 0 0 0 0 10 0 1297.6303 A0A024RC67;O43663;G3V3N7;H0YL53 A0A024RC67 410 419 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.022058 45.997 2 1.1727 0.92335 7.8199 2 Median NaN NaN NaN 0 0 Median 1.1727 0.92335 7.8199 2 0 Median 5107300 2161500 2945800 0 0 0 5107300 2161500 2945800 6170 353 6315 16310;16311 25446;25447 25447 2 IENVETLVLQAPK LPSELERQEDQGCVRIENVETLVLQAPKDS VRIENVETLVLQAPKDSFALKSNERGIGQA R I E P K D 1 0 1 0 0 1 2 0 0 1 2 1 0 0 1 0 1 0 0 2 0 0 13 0 1452.8188 O95235;D6RBN1;D6R9E4 O95235 90 102 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 1.5567E-19 149.23 2 2 0.99772 0.96724 12.892 4 Median 0.78218 0.88356 0.83064 2 0 Median 1.3063 1.0962 5.734 2 0 Median 331510000 175380000 156140000 226200000 129490000 96704000 105310000 45882000 59432000 6171 1421 6316 16312;16313;16314;16315 25448;25449;25450;25451;25452;25453;25454;25455 25453 8 IEPAEELNSNDMK PVVIMKRSLRTSAKRIEPAEELNSNDMKTN KRIEPAEELNSNDMKTNKEEHKLQDSVPEN R I E M K T 1 0 2 1 0 0 3 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 13 0 1488.6766 P46013 P46013 3059 3071 MKI67 Antigen KI-67 yes yes 2 3.657E-05 94.616 2 1.7328 1.7684 6.2121 2 Median 1.7328 1.7684 6.2121 2 0 Median NaN NaN NaN 0 0 Median 27525000 12174000 15351000 27525000 12174000 15351000 0 0 0 6172 1569 6317 16316;16317 25456;25457;25458 25456 1335 3 IEPGVSVSLVNPQPSNGHFSTK IREDCCPGKPLNVFRIEPGVSVSLVNPQPS SLVNPQPSNGHFSTKIEIKQGDNCDSIIRR R I E T K I 0 0 2 0 0 1 1 2 1 1 1 1 0 1 3 4 1 0 0 3 0 0 22 0 2293.1703 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 1017 1038 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 3 0.0094997 29.126 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18969000 18969000 0 18969000 18969000 0 0 0 0 6173 883 6318 16318;16319 25459;25460 25459 2 IEPHTGLLLLSVQK TKKKVSYVQLKERCRIEPHTGLLLLSVQKR RIEPHTGLLLLSVQKRSMSFQGIRQPVTVT R I E Q K R 0 0 0 0 0 1 1 1 1 1 4 1 0 0 1 1 1 0 0 1 0 0 14 0 1546.9083 P15924;Q4LE79 P15924 2192 2205 DSP;DSP variant protein Desmoplakin yes no 3 0.00079175 48.608 1 0.86568 0.87461 NaN 1 Median 0.86568 0.87461 NaN 1 0 Median NaN NaN NaN 0 0 Median 16356000 6314000 10042000 16356000 6314000 10042000 0 0 0 6174 1486 6319 16320 25461 25461 1 IEPPGLFR FCIMDNHKERIANFKIEPPGLFRGRGNHPK ERIANFKIEPPGLFRGRGNHPKMGMLKRRI K I E F R G 0 1 0 0 0 0 1 1 0 1 1 0 0 1 2 0 0 0 0 0 0 0 8 0 927.5178 P11387;B9EG90;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;E5RIC7;D3DWJ7;E5RJ95;E5RFS0 P11387 355 362 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0062085 88.029 3 2 1.2427 1.2602 0.86158 4 Median 1.0698 1.2602 0.22469 2 0 Median 1.4433 1.2543 1.3991 2 0 Median 1524700000 726120000 798540000 1284400000 627660000 656730000 240280000 98468000 141810000 6175 1470 6320 16321;16322;16323;16324;16325 25462;25463;25464;25465;25466;25467;25468;25469 25463 8 IEQIQCYSAK DLEQLHIKVTSLCSRIEQIQCYSAKDRLAQ SLCSRIEQIQCYSAKDRLAQSDMAKRVANL R I E A K D 1 0 0 0 1 2 1 0 0 2 0 1 0 0 0 1 0 0 1 0 0 0 10 0 1238.5965 P52948;H7C3P6;H0YCT1 P52948 1730 1739 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0033685 64.841 1 2 1.1434 0.95889 NaN 1 Median NaN NaN NaN 0 0 Median 1.1434 0.95889 NaN 1 0 Median 1240400 625460 614950 0 0 0 1240400 625460 614950 6176 1603 6321 16326;16327;16328 25470;25471;25472;25473 25471 4 IEQVDKEDEITEK PSGDSTLPTCSKKRKIEQVDKEDEITEKKA RKIEQVDKEDEITEKKAKKAKIKVKVEEEE K I E E K K 0 0 0 2 0 1 4 0 0 2 0 2 0 0 0 0 1 0 0 1 0 0 13 1 1574.7675 Q9Y2X3;B3KN82 Q9Y2X3 445 457 NOP58 Nucleolar protein 58 yes no 2;3 7.0799E-38 180.09 4 2 0.80556 0.88483 5.4569 6 Median 0.77624 0.90997 4.5317 4 0 Median 1.0099 0.85424 4.8067 2 0 Median 979900000 544800000 435100000 953230000 532230000 421000000 26673000 12573000 14100000 6177 2129 6322 16329;16330;16331;16332;16333;16334 25474;25475;25476;25477;25478;25479;25480;25481;25482 25479 9 IESEGLLSLTTQLVK ERFKALHSKLQALGKIESEGLLSLTTQLVK IESEGLLSLTTQLVKEKLSTCEAEDIATYE K I E V K E 0 0 0 0 0 1 2 1 0 1 4 1 0 0 0 2 2 0 0 1 0 0 15 0 1629.9189 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;B4DKI9;Q8N6F2 Q6PKB3 155 169 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.0011654 66.498 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6366300 6366300 0 6366300 6366300 0 0 0 0 6178 305 6323 16335 25483 25483 1 IESIQLMMDSETGR ITEDMLRGIFEPFGRIESIQLMMDSETGRS RIESIQLMMDSETGRSKGYGFITFSDSECA R I E G R S 0 1 0 1 0 1 2 1 0 2 1 0 2 0 0 2 1 0 0 0 0 0 14 0 1608.7487 A0A0U1RQH7;B7Z4L7;Q6N037;E1P5S2;G3XAC6;B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;Q7Z3L0;Q6MZY7;A0A0U1RQW2 A0A0U1RQH7 123 136 DKFZp686A11192;RNPC2;RBM39;DKFZp781C0423;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 2 0.00051729 64.64 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8184300 0 8184300 8184300 0 8184300 0 0 0 6179 588 6324 16336;16337 25484;25485 25484 442;443 2 IESLSSQLSNLQK TVNSAREELMESRMRIESLSSQLSNLQKES MRIESLSSQLSNLQKESRACLERIQELEDL R I E Q K E 0 0 1 0 0 2 1 0 0 1 3 1 0 0 0 4 0 0 0 0 0 0 13 0 1445.7726 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 300 312 LMNB1 Lamin-B1 yes no 2 6.1996E-89 231.42 2 2 0.98292 0.92384 34.482 4 Median 1.083 1.2442 3.9223 2 0 Median 0.86991 0.68642 3.8323 2 0 Median 414310000 190260000 224050000 385670000 176380000 209290000 28646000 13885000 14761000 6180 1502 6325 16338;16339;16340;16341 25486;25487;25488;25489;25490;25491;25492;25493;25494;25495 25486 10 IETDEEESCDNAHGDANQPAR EEEEEGKPSRKRLHRIETDEEESCDNAHGD ESCDNAHGDANQPARDSQPRVLPSEQESTK R I E A R D 3 1 2 3 1 1 4 1 1 1 0 0 0 0 1 1 1 0 0 0 0 0 21 0 2356.9462 Q96T23 Q96T23 1303 1323 RSF1 Remodeling and spacing factor 1 yes yes 3 6.5759E-22 113.47 2 2 0.92304 0.77678 50.777 3 Median 0.397 0.39466 NaN 1 0 Median 1.0612 0.91014 22.407 2 0 Median 17473000 10865000 6607700 10849000 8019400 2829400 6624300 2846000 3778300 6181 1991 6326 16342;16343;16344;16345 25496;25497;25498;25499;25500;25501;25502 25499 7 IETDLPQIR VAEAAIQIFRNTGHKIETDLPQIRSTLIPI RNTGHKIETDLPQIRSTLIPILHQKAKRGT K I E I R S 0 1 0 1 0 1 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 9 0 1083.5924 G1UI16;Q29RF7 G1UI16 709 717 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.013135 64.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3749900 3749900 0 3749900 3749900 0 0 0 0 6182 1270 6327 16346 25503 25503 1 IETIEVMEDR TEEYNLRDYFEKYGKIETIEVMEDRQSGKK EKYGKIETIEVMEDRQSGKKRGFAFVTFDD K I E D R Q 0 1 0 1 0 0 3 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1233.5911 P51991;B4E3E6;B4DDB6;Q65ZQ3 P51991 152 161 HNRNPA3;HNRPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 yes no 2 0.0010258 70.552 2 1.5556 1.5758 NaN 1 Median 1.5556 1.5758 NaN 1 0 Median NaN NaN NaN 0 0 Median 56677000 13571000 43106000 56677000 13571000 43106000 0 0 0 6183 1598 6328 16347;16348 25504;25505 25504 1379 2 IETKPCGEELK EFLRHLKSFFQIMFKIETKPCGEELKGGDK IMFKIETKPCGEELKGGDKVLMTCVGIGFS K I E L K G 0 0 0 0 1 0 3 1 0 1 1 2 0 0 1 0 1 0 0 0 0 0 11 1 1302.649 Q9Y2P8;Q5VZU3 Q9Y2P8 341 351 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 3 0.014648 38.021 1 1 0.99581 1.0021 0.032621 2 Median 0.84858 1.0018 NaN 1 0 Median 1.1686 1.0023 NaN 1 0 Median 57669000 28996000 28673000 49657000 25392000 24265000 8012100 3604700 4407400 6184 2125 6329 16349;16350 25506;25507 25506 2 IETLDPALIRPGR FDSRGDVKVIMATNRIETLDPALIRPGRID NRIETLDPALIRPGRIDRKIEFPLPDEKTK R I E G R I 1 2 0 1 0 0 1 1 0 2 2 0 0 0 2 0 1 0 0 0 0 0 13 1 1449.8304 Q53XL8;Q53HB3;P62191 Q53XL8 334 346 PSMC1 26S protease regulatory subunit 4 yes no 3 0.00058941 58.487 1 2.2351 2.4188 NaN 1 Median 2.2351 2.4188 NaN 1 0 Median NaN NaN NaN 0 0 Median 22516000 5590600 16925000 22516000 5590600 16925000 0 0 0 6185 1634 6330 16351 25508 25508 1 IETNENNLESAK MLRTAVDSLVAYSVKIETNENNLESAKGLL SVKIETNENNLESAKGLLDDLRNDLDRLFV K I E A K G 1 0 3 0 0 0 3 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1360.647 B3KVX6;Q8TB01;Q6NWZ1;A0A024RBH2;Q07065 B3KVX6 486 497 CKAP4 Cytoskeleton-associated protein 4 yes no 2 7.1571E-05 97.456 2 1.1857 1.1878 NaN 1 Median 1.1857 1.1878 NaN 1 0 Median NaN NaN NaN 0 0 Median 6790700 3328400 3462300 6790700 3328400 3462300 0 0 0 6186 338 6331 16352;16353 25509;25510;25511 25510 3 IETSINLAWTAGSNNTR GTEFGGSIYQKVNEKIETSINLAWTAGSNN TSINLAWTAGSNNTRFGIAAKYMLDCRTSL K I E T R F 2 1 3 0 0 0 1 1 0 2 1 0 0 0 0 2 3 1 0 0 0 0 17 0 1846.9173 Q9Y277 Q9Y277 202 218 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2 3.062E-07 122.1 2 2 1.774 1.7053 19.604 4 Median 1.3488 1.4326 6.9857 2 0 Median 2.3571 1.9917 4.2915 2 0 Median 84677000 30790000 53887000 72063000 27394000 44669000 12614000 3396200 9217900 6187 2124 6332 16354;16355;16356;16357 25512;25513;25514;25515;25516;25517;25518;25519 25516 8 IETVISDEEVIK AVRGLEALLADPQQKIETVISDEEVIKWTK QQKIETVISDEEVIKWTKFFVVFRHPVLIF K I E I K W 0 0 0 1 0 0 3 0 0 3 0 1 0 0 0 1 1 0 0 2 0 0 12 0 1373.729 Q9H8H0;J3QR28;J3QLQ6 Q9H8H0 143 154 NOL11 Nucleolar protein 11 yes no 2 4.9192E-18 145.34 2 2 1.0885 1.0657 3.0544 4 Median 0.92557 1.0672 2.2048 2 0 Median 1.2824 1.0476 4.4391 2 0 Median 490820000 242490000 248330000 432190000 217410000 214780000 58632000 25081000 33551000 6188 2042 6333 16358;16359;16360;16361 25520;25521;25522;25523;25524;25525;25526;25527;25528 25522 9 IEVIEIMTDR TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK EQYGKIEVIEIMTDRGSGKKRGFAFVTFDD K I E D R G 0 1 0 1 0 0 2 0 0 3 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1217.6326 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q9BSM5;Q0VAC0;Q6IPF2;F8VZ49;A0A024RC46;A0A024QZ98;Q32P51;F8VYN5;F8VTQ5;H0YH80 F8W6I7 131 140 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 3.887E-09 117.31 3 2 0.70075 0.60135 95.441 3 Median 2.8138 3.0354 NaN 1 0 Median 0.68712 0.58173 4.6917 2 0 Median 151910000 18314000 133590000 145830000 14756000 131070000 6079100 3557200 2521900 6189 317 6334 16362;16363;16364;16365;16366 25529;25530;25531;25532;25533;25534;25535 25530 241 7 IEVLEEELR EMLKSLEDLKLKNTKIEVLEEELRLARDAN KLKNTKIEVLEEELRLARDANSENCNKNKF K I E L R L 0 1 0 0 0 0 4 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1128.6027 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 1034 1042 DSP;DSP variant protein Desmoplakin yes no 2 8.1393E-05 101.64 2 1 0.39368 0.34114 NaN 1 Median NaN NaN NaN 0 0 Median 0.39368 0.34114 NaN 1 0 Median 32859000 31928000 931560 30179000 30179000 0 2679700 1748100 931560 6190 1486 6335 16367;16368;16369 25536;25537;25538 25536 3 IEVPLYSLLEQTHLK NRSQFEELCAELLQKIEVPLYSLLEQTHLK IEVPLYSLLEQTHLKVEDVSAVEIVGGATR K I E L K V 0 0 0 0 0 1 2 0 1 1 4 1 0 0 1 1 1 0 1 1 0 0 15 0 1781.9927 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 317 331 HSPH1 Heat shock protein 105 kDa yes no 3 0.00070554 45.33 2 2 2.0759 2.2457 35.118 4 Linear 2.0017 2.1062 6.4878 2 0 Median 1.4378 1.1516 3.5737 2 0 Median 88255000 28584000 59671000 78867000 24551000 54315000 9388300 4032500 5355800 6191 390 6336 16370;16371;16372;16373 25539;25540;25541;25542;25543;25544 25541 6 IEVQDTSGGTTALRPSASTQALSSSVSSSK CYQEVSQCFGVLSSRIEVQDTSGGTTALRP SASTQALSSSVSSSKLFSSSTAPHETSFGE R I E S K L 3 1 0 1 0 2 1 2 0 1 2 1 0 0 1 9 4 0 0 2 0 0 30 1 2951.4684 Q16531;F5GY55;B7Z2A1;B4DZP5 Q16531 740 769 DDB1 DNA damage-binding protein 1 yes no 3 4.7016E-55 145.29 2 2 0.87586 0.88778 10.53 4 Median 0.68365 0.82043 0.039998 2 0 Median 1.116 0.98191 3.1345 2 0 Median 905280000 493240000 412030000 652340000 380570000 271770000 252930000 112680000 140260000 6192 1770 6337 16374;16375;16376;16377 25545;25546;25547;25548;25549;25550;25551;25552;25553;25554;25555;25556;25557;25558;25559 25547 15 IEVSLQPEVPPSK FQNSEQSRRILRRRKIEVSLQPEVPPSKQL RKIEVSLQPEVPPSKQLLSTIMKDSEKHIE K I E S K Q 0 0 0 0 0 1 2 0 0 1 1 1 0 0 3 2 0 0 0 2 0 0 13 0 1421.7766 Q9H8H0;J3QR28 Q9H8H0 387 399 NOL11 Nucleolar protein 11 yes no 2 3.4236E-19 147.62 2 2 1.0472 1.0358 4.1727 4 Linear 0.91959 1.0348 0.22444 2 0 Median 1.2004 0.96389 1.3378 2 0 Median 167870000 85104000 82770000 156900000 80433000 76462000 10979000 4670800 6308000 6193 2042 6338 16378;16379;16380;16381 25560;25561;25562;25563;25564;25565;25566;25567;25568;25569;25570;25571 25564 12 IEWLESHQDADIEDFK SSEDKETMEKAVEEKIEWLESHQDADIEDF EWLESHQDADIEDFKAKKKELEEIVQPIIS K I E F K A 1 0 0 3 0 1 3 0 1 2 1 1 0 1 0 1 0 1 0 0 0 0 16 0 1973.9007 V9HWB4;P11021 V9HWB4 602 617 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 3 0.047189 25.319 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7137100 7137100 0 7137100 7137100 0 0 0 0 6194 1466 6339 16382 25572 25572 1 IEYEPFRK QTKQRKLLEPVDHGKIEYEPFRKNFYVEVP EPVDHGKIEYEPFRKNFYVEVPELAKMSQE K I E R K N 0 1 0 0 0 0 2 0 0 1 0 1 0 1 1 0 0 0 1 0 0 0 8 1 1080.5604 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 326 333 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 0.030426 28.945 1 1.3896 1.5674 NaN 1 Median 1.3896 1.5674 NaN 1 0 Median NaN NaN NaN 0 0 Median 14514000 6053400 8460700 14514000 6053400 8460700 0 0 0 6195 511 6340 16383 25573 25573 1 IEYNDQNDGSCDVK VGSLGFAIEGPSQAKIEYNDQNDGSCDVKY KIEYNDQNDGSCDVKYWPKEPGEYAVHIMC K I E V K Y 0 0 2 3 1 1 1 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 14 0 1655.6733 O75369;A0A024R321;Q68CT4;E7EN95 O75369 594 607 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.012656 50.284 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1593700 0 1593700 1593700 0 1593700 0 0 0 6196 1402 6341 16384 25574 25574 1 IEYVTVTPEGFR PGKFLLGYQPRGKPRIEYVTVTPEGFRYRG KPRIEYVTVTPEGFRYRGQIFPTVNGLFRW R I E F R Y 0 1 0 0 0 0 2 1 0 1 0 0 0 1 1 0 2 0 1 2 0 0 12 0 1409.7191 Q7KZ85 Q7KZ85 1484 1495 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0011461 81.338 2 1.0537 1.0713 NaN 1 Median 1.0537 1.0713 NaN 1 0 Median NaN NaN NaN 0 0 Median 13006000 3316300 9689700 13006000 3316300 9689700 0 0 0 6197 1870 6342 16385;16386 25575;25576 25576 2 IFAKPEEQR KKFSAVRISKGLSEKIFAKPEEQRKTLEED KGLSEKIFAKPEEQRKTLEEDVDDRAPSKK K I F Q R K 1 1 0 0 0 1 2 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 9 1 1116.5928 Q5T0F3;Q13823 Q5T0F3 632 640 GNL2 Nucleolar GTP-binding protein 2 yes no 2;3 0.0042288 67.993 2 0.86723 0.97946 10.013 2 Median 0.86723 0.97946 10.013 2 0 Median NaN NaN NaN 0 0 Median 30456000 15517000 14938000 30456000 15517000 14938000 0 0 0 6198 1721 6343 16387;16388 25577;25578 25577 2 IFAPNHVVAK LPTPKCHTPPLYRMRIFAPNHVVAKSRFWY LYRMRIFAPNHVVAKSRFWYFVSQLKKMKK R I F A K S 2 0 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 0 2 0 0 10 0 1094.6237 M0R117;B4DM74;Q02543;M0R3D6;M0R1A7;B4DM94;B4DUV3;B2R4C0;Q53HD3;Q32XH3 M0R117 32 41 RPL18A 60S ribosomal protein L18a yes no 2;3 8.2021E-12 153.71 4 2 1.0006 1.0674 15.156 6 Median 0.93425 1.1137 6.7614 4 0 Median 1.0728 0.85849 4.618 2 0 Median 3449600000 1762300000 1687300000 3412300000 1744500000 1667800000 37277000 17757000 19520000 6199 1003 6344 16389;16390;16391;16392;16393;16394 25579;25580;25581;25582;25583;25584;25585;25586;25587;25588;25589 25585 11 IFAQPVSLK LRSVLDQLQDKDPARIFAQPVSLKEVPDYL DKDPARIFAQPVSLKEVPDYLDHIKHPMDF R I F L K E 1 0 0 0 0 1 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 9 0 1001.591 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B7Z926;Q59G93;Q9Y4Q3;B4DZC2 A0A024R4W4 586 594 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.022342 57.047 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10169000 10169000 0 10169000 10169000 0 0 0 0 6200 162 6345 16395;16396 25590;25591 25591 2 IFASNLK EPEAWTAAAMYQATRIFASNLKERMAQRFY AAMYQATRIFASNLKERMAQRFYNLVLLPR R I F L K E 1 0 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 791.45414 Q13895;H7BY94 Q13895 236 242 BYSL Bystin yes no 2 0.013364 103.02 1 1.1711 1.309 NaN 1 Median 1.1711 1.309 NaN 1 0 Median NaN NaN NaN 0 0 Median 87566000 39038000 48528000 87566000 39038000 48528000 0 0 0 6201 1724 6346 16397 25592 25592 1 IFCCHGGLSPDLQSMEQIR DCFNCLPIAAIVDEKIFCCHGGLSPDLQSM HGGLSPDLQSMEQIRRIMRPTDVPDQGLLC K I F I R R 0 1 0 1 2 2 1 2 1 2 2 0 1 1 1 2 0 0 0 0 0 0 19 0 2247.0235 P62136;A0A140VJS9;B3KXM2;F8W1A0;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8 P62136 169 187 PPP1CA;PPP1CC;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 3 1.2477E-05 50.392 1 1.9997 1.7117 NaN 1 Median NaN NaN NaN 0 0 Median 1.9997 1.7117 NaN 1 0 Median 8673500 2768600 5904800 0 0 0 8673500 2768600 5904800 6202 1632;343;1633 6347 16398 25593;25594 25594 2 IFDEILVNAADNK GINYREVTFVPGLYKIFDEILVNAADNKQR YKIFDEILVNAADNKQRDPKMSCIRVTIDP K I F N K Q 2 0 2 2 0 0 1 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 13 0 1460.7511 P11388;J3KTB7;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 84 96 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 4.6309E-30 164.65 11 5 1.129 0.90003 21.359 11 Median 0.75351 0.89092 24.026 7 0 Median 1.2901 1.1363 13.285 4 0 Median 3376600000 1812200000 1564400000 2581300000 1459400000 1121900000 795290000 352770000 442520000 6203 1471;1679 6348 16399;16400;16401;16402;16403;16404;16405;16406;16407;16408;16409;16410;16411;16412;16413;16414 25595;25596;25597;25598;25599;25600;25601;25602;25603;25604;25605;25606;25607;25608;25609;25610;25611;25612;25613;25614;25615;25616;25617;25618;25619;25620;25621;25622;25623;25624;25625;25626;25627;25628;25629;25630;25631;25632;25633;25634;25635;25636;25637;25638 25613 44 IFDIDEAEEGVK LNFFNQKKKKKKTKKIFDIDEAEEGVKDLK TKKIFDIDEAEEGVKDLKIESDVQEPTEPE K I F V K D 1 0 0 2 0 0 3 1 0 2 0 1 0 1 0 0 0 0 0 1 0 0 12 0 1363.6507 Q6IBR8;B5BU01;P20042 Q6IBR8 88 99 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 2 1.6659E-05 101.97 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16629000 0 16629000 15971000 0 15971000 658500 0 658500 6204 1073 6349 16415;16416;16417 25639;25640;25641 25640 3 IFDLGR PKSRFCRGVPDAKIRIFDLGRKKAKVDEFP RGVPDAKIRIFDLGRKKAKVDEFPLCGHMV R I F G R K 0 1 0 1 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 6 0 719.39662 X1WI28;X5D2T3;P27635;B8A6G2;X5D2W5;A6QRI9;Q96L21 X1WI28 33 38 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 2 0.042873 105.42 1 0.90572 1.0724 NaN 1 Median 0.90572 1.0724 NaN 1 0 Median NaN NaN NaN 0 0 Median 392280000 204140000 188150000 392280000 204140000 188150000 0 0 0 6205 1524 6350 16418 25642 25642 1 IFDLIGLPPEDDWPR KPLFCGNSEADQLGKIFDLIGLPPEDDWPR IFDLIGLPPEDDWPRDVSLPRGAFPPRGPR K I F P R D 0 1 0 3 0 0 1 1 0 2 2 0 0 1 3 0 0 1 0 0 0 0 15 0 1781.8988 F8VZZ0;F8VZ51;Q6LC83;A0A024RBB6;P11802 F8VZZ0 152 166 CDK4 Cyclin-dependent kinase 4 yes no 2 0.035117 39.625 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1655100 0 1655100 1655100 0 1655100 0 0 0 6206 331 6351 16419 25643 25643 1 IFEAISSMFPDK DDKESRPPRKFPSDKIFEAISSMFPDKGTA SDKIFEAISSMFPDKGTAEELKEKYKELTE K I F D K G 1 0 0 1 0 0 1 0 0 2 0 1 1 2 1 2 0 0 0 0 0 0 12 0 1383.6744 A0A090N8E9;Q15910;F2YMM1;S4S3R8;Q75MP9;Q75MQ0;B7Z8K5;Q6R125;G3XAL2;Q59H64;B7Z8L6 A0A090N8E9 223 234 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 2 0.0014176 57.785 3 1.6935 1.7494 NaN 1 Median 1.6935 1.7494 NaN 1 0 Median NaN NaN NaN 0 0 Median 11021000 4958300 6062900 11021000 4958300 6062900 0 0 0 6207 456 6352 16420;16421;16422 25644;25645;25646 25644 323 3 IFEGTNDILR EPGVERVLRDLRIFRIFEGTNDILRLFVAL LRIFRIFEGTNDILRLFVALQGCMDKGKEL R I F L R L 0 1 1 1 0 0 1 1 0 2 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1176.6139 Q53HR2;B4DEA8;P49748;B3KPA6;B3KPX1;G3V1M7;J3QRJ8;J3KSR4 Q53HR2 460 469 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0033968 64.711 2 1.1878 1.2021 NaN 1 Median 1.1878 1.2021 NaN 1 0 Median NaN NaN NaN 0 0 Median 26579000 14240000 12339000 26579000 14240000 12339000 0 0 0 6208 965 6353 16423;16424 25647;25648 25648 2 IFEPPPPK IIPLYSTLPPQQQQRIFEPPPPKKQNGAIG PPQQQQRIFEPPPPKKQNGAIGRKVVVSTN R I F P K K 0 0 0 0 0 0 1 0 0 1 0 1 0 1 4 0 0 0 0 0 0 0 8 0 923.51165 O43143;B4E0S6 O43143 400 407 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.0078194 81.297 2 2 1.2075 1.1605 18.855 4 Median 1.2068 1.3563 1.8879 2 0 Median 1.2355 0.98093 3.6162 2 0 Median 197800000 88903000 108900000 188150000 84718000 103430000 9649300 4185000 5464300 6209 1379 6354 16425;16426;16427;16428 25649;25650;25651;25652;25653;25654;25655 25652 7 IFESVTLPSNR LLRAPRFTPSEAHSRIFESVTLPSNRTSAG AHSRIFESVTLPSNRTSAGTSSSGVSNRKR R I F N R T 0 1 1 0 0 0 1 0 0 1 1 0 0 1 1 2 1 0 0 1 0 0 11 0 1261.6667 Q03164;E9PR05 Q03164 711 721 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.0005685 74.162 2 1.6212 1.3659 9.3771 2 Median NaN NaN NaN 0 0 Median 1.6212 1.3659 9.3771 2 0 Median 11696000 4129700 7566300 0 0 0 11696000 4129700 7566300 6210 1680 6355 16429;16430 25656;25657 25656 2 IFETLQDK QPDCSNPLTLDECARIFETLQDKYYEEYRM TLDECARIFETLQDKYYEEYRMSDRVDLAV R I F D K Y 0 0 0 1 0 1 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 8 0 992.51786 Q8N523;A0A024R1I7;Q9UBB9;B4DPE5 Q8N523 403 410 TFIP11 Tuftelin-interacting protein 11 yes no 2 0.027289 64.207 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6211 77 6356 16431 25658 25658 1 IFEYETQR HGPVVGSTRRLYEKKIFEYETQRRRLSPPS RRLYEKKIFEYETQRRRLSPPSSSAASSYS K I F Q R R 0 1 0 0 0 1 2 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 8 0 1084.5189 P50402 P50402 38 45 EMD Emerin yes yes 2 0.0011347 111.82 2 1 0.58601 0.65738 13.098 2 Median 0.58601 0.65738 13.098 2 0 Median NaN NaN NaN 0 0 Median 136350000 80026000 56327000 133830000 80026000 53799000 2527700 0 2527700 6212 1590 6357 16432;16433;16434 25659;25660;25661;25662;25663;25664 25662 6 IFFAGDTIPK RCVYKPMQPGPHVVKIFFAGDTIPKSPFVV PHVVKIFFAGDTIPKSPFVVQVGEACNPNA K I F P K S 1 0 0 1 0 0 0 1 0 2 0 1 0 2 1 0 1 0 0 0 0 0 10 0 1107.5964 O75369;A0A024R321;Q68CT4;E7EN95 O75369 430 439 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.033075 49.418 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5411600 0 5411600 5411600 0 5411600 0 0 0 6213 1402 6358 16435;16436 25665;25666 25666 2 IFFIDPNERPVTLYHLLK EITETGWGEFEIIIKIFFIDPNERPVTLYH IDPNERPVTLYHLLKLFQSDTNAMLGKKTV K I F L K L 0 1 1 1 0 0 1 0 1 2 3 1 0 2 2 0 1 0 1 1 0 0 18 1 2214.2201 O95619;F8W1B9;F8VTR4 O95619 102 119 YEATS4 YEATS domain-containing protein 4 yes no 4 0.0041569 24.538 2 1.1588 1.0195 16.391 2 Median NaN NaN NaN 0 0 Median 1.1588 1.0195 16.391 2 0 Median 4316000 1942300 2373700 0 0 0 4316000 1942300 2373700 6214 1430 6359 16437;16438 25667;25668;25669;25670 25670 4 IFGVTTLDIVR TAEVFKKHGVYNPNKIFGVTTLDIVRANTF NPNKIFGVTTLDIVRANTFVAELKGLDPAR K I F V R A 0 1 0 1 0 0 0 1 0 2 1 0 0 1 0 0 2 0 0 2 0 0 11 0 1232.7129 Q0QF37;Q75MT9;Q6FHZ0;A0A024R4K3;P40926;G3XAL0;B3KTM1 Q0QF37 145 155 MDH2 Malate dehydrogenase;Malate dehydrogenase, mitochondrial yes no 2 0.00041003 80.688 1 5.5169 5.5609 NaN 1 Median 5.5169 5.5609 NaN 1 0 Median NaN NaN NaN 0 0 Median 6441800 1683800 4758000 6441800 1683800 4758000 0 0 0 6215 156 6360 16439 25671 25671 1 IFHAPNASAPSSSLSTFK CTFNADKKTLETHIKIFHAPNASAPSSSLS APNASAPSSSLSTFKDKNKNDGLKPKQADS K I F F K D 3 0 1 0 0 0 0 0 1 1 1 1 0 2 2 5 1 0 0 0 0 0 18 0 1860.937 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 127 144 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 1.9617E-05 46.925 1 2 1.7024 1.3619 51.003 3 Median 0.57105 0.58355 NaN 1 0 Median 1.7382 1.4089 4.7973 2 0 Median 46467000 23004000 23463000 28293000 15875000 12418000 18174000 7129300 11045000 6216 878 6361 16440;16441;16442 25672;25673;25674;25675;25676 25673 5 IFHELTQTDK ITAANNLVAAAIDARIFHELTQTDKALFNR AIDARIFHELTQTDKALFNRLVPSVNGVRR R I F D K A 0 0 0 1 0 1 1 0 1 1 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1230.6245 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 464 473 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 3 0.0077661 40.883 1 1.9846 2.0615 NaN 1 Median 1.9846 2.0615 NaN 1 0 Median NaN NaN NaN 0 0 Median 12490000 4525100 7965100 12490000 4525100 7965100 0 0 0 6217 196 6362 16443 25677 25677 1 IFHTVTTTDDPVIR RITTRSEKPLRSIKRIFHTVTTTDDPVIRK RIFHTVTTTDDPVIRKLAKTQGNVFATDAI R I F I R K 0 1 0 2 0 0 0 0 1 2 0 0 0 1 1 0 4 0 0 2 0 0 14 0 1613.8413 O15371;B4E1K8;B0QYA5;B0QYA4 O15371 223 236 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 3 0.010309 18.988 1 1.5349 1.528 NaN 1 Median 1.5349 1.528 NaN 1 0 Median NaN NaN NaN 0 0 Median 8005500 2872300 5133200 8005500 2872300 5133200 0 0 0 6218 1378 6363 16444 25678 25678 1 IFIGTFK QHIDYRMRCILQDGRIFIGTFKAFDKHMNL RCILQDGRIFIGTFKAFDKHMNLILCDCDE R I F F K A 0 0 0 0 0 0 0 1 0 2 0 1 0 2 0 0 1 0 0 0 0 0 7 0 824.47963 J3QLE5;Q66K91;Q5XPV6;B4DVS0;X5DP00;Q53HE7;Q9UIS4;Q15182;P63162;P14678;Q6LBS1;J3KRY3;S4R3P3 J3QLE5 26 32 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated protein;Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B yes no 2 0.017423 97.071 2 1.9981 2.2284 5.4979 2 Median 1.9981 2.2284 5.4979 2 0 Median NaN NaN NaN 0 0 Median 141680000 56162000 85519000 141680000 56162000 85519000 0 0 0 6219 1041 6364 16445;16446 25679;25680;25681 25681 3 IFLFDTQHFISK KCCLLLQFILNCLYKIFLFDTQHFISKERA LYKIFLFDTQHFISKERAGALMMPLVDQLE K I F S K E 0 0 0 1 0 1 0 0 1 2 1 1 0 3 0 1 1 0 0 0 0 0 12 0 1494.7871 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 2002 2013 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2;3 5.47E-06 84.892 1 2 1.1677 1.0558 10.304 3 Median 0.94076 1.0558 NaN 1 0 Median 1.2625 1.0395 14.517 2 0 Median 65074000 32414000 32660000 55291000 27802000 27489000 9783600 4612400 5171200 6220 897 6365 16447;16448;16449 25682;25683;25684;25685 25683 4 IFLLGLADNEAAIVQAESEETK EWRGRTVPVKIDKVRIFLLGLADNEAAIVQ DNEAAIVQAESEETKERLFESMLSECRDAI R I F T K E 4 0 1 1 0 1 4 1 0 2 3 1 0 1 0 1 1 0 0 1 0 0 22 0 2360.2111 Q9UHB9;Q96K98;B3KMI9;Q96K97 Q9UHB9 312 333 SRP68 Signal recognition particle subunit SRP68 yes no 2 1.5615E-05 67.115 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6221 2101 6366 16450 25686 25686 1 IFLLTNNNLLLADQK VVNKINRANGKSTSRIFLLTNNNLLLADQK IFLLTNNNLLLADQKSGQIKSEVPLVDVTK R I F Q K S 1 0 3 1 0 1 0 0 0 1 5 1 0 1 0 0 1 0 0 0 0 0 15 0 1728.9774 E9PDF6;B0I1S9;O43795;H7C2Y7;B3KQI2 E9PDF6 978 992 MYO1B Unconventional myosin-Ib yes no 2 1.28E-07 110.08 2 1 1.8615 1.8897 9.9849 3 Plateau 1.8346 1.869 2.2834 2 0 Median 1.9683 1.5758 NaN 1 0 Median 34011000 11935000 22076000 31124000 11248000 19876000 2887300 687060 2200300 6222 805 6367 16451;16452;16453 25687;25688;25689;25690;25691 25687 5 IFNITDNAAIK EFYRELGLPPKQTVKIFNITDNAAIKPGTP QTVKIFNITDNAAIKPGTPLYAAHFRPGQY K I F I K P 2 0 2 1 0 0 0 0 0 3 0 1 0 1 0 0 1 0 0 0 0 0 11 0 1218.6608 H0Y9G6;E7ETU7;B4DKM0;P09001;D6RC14;E9PF06;B4DW56 H0Y9G6 193 203 MRPL3 39S ribosomal protein L3, mitochondrial yes no 2 0.005584 64.711 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10377000 10377000 0 10377000 10377000 0 0 0 0 6223 992 6368 16454;16455 25692;25693 25693 2 IFNLSGGEK GIMFSVRPPKKSWKKIFNLSGGEKTLSSLA KKSWKKIFNLSGGEKTLSSLALVFALHHYK K I F E K T 0 0 1 0 0 0 1 2 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 963.50255 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1188 1196 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0019632 83.265 3 2 1.7304 1.4521 20.081 3 Median 0.87652 1.0288 NaN 1 0 Median 1.735 1.4567 0.44436 2 0 Median 653020000 211140000 441870000 551260000 176520000 374730000 101760000 34617000 67142000 6224 2070 6369 16456;16457;16458;16459;16460 25694;25695;25696;25697;25698;25699;25700;25701 25694 8 IFQIHTSR RKIEFPLPDEKTKKRIFQIHTSRMTLADDV DEKTKKRIFQIHTSRMTLADDVTLDDLIMA R I F S R M 0 1 0 0 0 1 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 8 0 1000.5454 Q53XL8;Q53HB3;P62191 Q53XL8 364 371 PSMC1 26S protease regulatory subunit 4 yes no 3 0.0043807 57.96 1 1.9973 1.9866 NaN 1 Median 1.9973 1.9866 NaN 1 0 Median NaN NaN NaN 0 0 Median 8281300 2955300 5326000 8281300 2955300 5326000 0 0 0 6225 1634 6370 16461 25702 25702 1 IFQPVIEAPGASK RIEKAANPSGKKKLKIFQPVIEAPGASKCI LKIFQPVIEAPGASKCIGPGCCHVAQPDSV K I F S K C 2 0 0 0 0 1 1 1 0 2 0 1 0 1 2 1 0 0 0 1 0 0 13 0 1355.7449 Q9BTC0 Q9BTC0 384 396 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0041168 62.633 2 2 1.407 1.1453 NaN 1 Median NaN NaN NaN 0 0 Median 1.407 1.1453 NaN 1 0 Median 33070000 2711400 30359000 20862000 0 20862000 12208000 2711400 9497000 6226 2002 6371 16462;16463;16464;16465 25703;25704;25705;25706;25707 25704 5 IFSGSSHQDLSQK ______________________________ IKIFSGSSHQDLSQKIADRLGLELGKVVTK K I F Q K I 0 0 0 1 0 2 0 1 1 1 1 1 0 1 0 4 0 0 0 0 0 0 13 0 1432.6947 Q53FW2;P60891;B1ALA7 Q53FW2 6 18 PRPS1 Ribose-phosphate pyrophosphokinase 1 no no 2 1.0576E-38 167.84 2 2.9285 2.9716 NaN 1 Median 2.9285 2.9716 NaN 1 0 Median NaN NaN NaN 0 0 Median 36831000 4679300 32152000 36831000 4679300 32152000 0 0 0 6227 1626 6372 16466;16467 25708;25709;25710 25710 3 IFSGVFVK SLLVQRTIARLRLKKIFSGVFVKVTPQNLK ARLRLKKIFSGVFVKVTPQNLKMLRIVEPY K I F V K V 0 0 0 0 0 0 0 1 0 1 0 1 0 2 0 1 0 0 0 2 0 0 8 0 895.51674 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 124 131 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.01271 66.993 1 0.90299 1.0147 NaN 1 Median 0.90299 1.0147 NaN 1 0 Median NaN NaN NaN 0 0 Median 55949000 28173000 27776000 55949000 28173000 27776000 0 0 0 6228 378 6373 16468 25711;25712;25713 25713 3 IFSQRPFDK ELLITDLLPDNRKLRIFSQRPFDKLEQLSS DNRKLRIFSQRPFDKLEQLSSGNKDSRDRR R I F D K L 0 1 0 1 0 1 0 0 0 1 0 1 0 2 1 1 0 0 0 0 0 0 9 1 1136.5978 B2R5U7;Q03701 B2R5U7 306 314 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.0082963 52.49 2 1.0969 1.2954 2.8969 2 Median 1.0969 1.2954 2.8969 2 0 Median NaN NaN NaN 0 0 Median 100090000 47689000 52397000 100090000 47689000 52397000 0 0 0 6229 836;1683 6374 16469;16470 25714;25715;25716;25717 25716 4 IFTFAEK YLKVDAQFGGIDQRKIFTFAEKYLPALGYS FGGIDQRKIFTFAEKYLPALGYSKRVHLMN K I F E K Y 1 0 0 0 0 0 1 0 0 1 0 1 0 2 0 0 1 0 0 0 0 0 7 0 854.4538 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 191 197 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.045068 60.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8860600 0 8860600 8860600 0 8860600 0 0 0 6230 567 6375 16471 25718 25718 1 IFTGSDDCLVK LSSVYCVTFDRTGRRIFTGSDDCLVKIWAT TGRRIFTGSDDCLVKIWATDDGRLLATLRG R I F V K I 0 0 0 2 1 0 0 1 0 1 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1253.5962 Q9NSI6;Q8WWQ0;Q6RI45 Q8WWQ0 198 208 BRWD1;PHIP;BRWD3 Bromodomain and WD repeat-containing protein 1;PH-interacting protein;Bromodomain and WD repeat-containing protein 3 no no 2 0.00040176 81.338 1 2 1.3268 1.0951 18.562 3 Median 0.71338 0.80446 NaN 1 0 Median 1.3795 1.1087 1.7447 2 0 Median 90037000 48106000 41931000 67050000 38481000 28569000 22987000 9625500 13362000 6231 1942;2068;1860 6376 16472;16473;16474 25719;25720;25721;25722;25723;25724 25722 6 IFTPIVEHLGLQIR VPANRYTPLKENWMKIFTPIVEHLGLQIRF KIFTPIVEHLGLQIRFNLKSRNVEIRTCKE K I F I R F 0 1 0 0 0 1 1 1 1 3 2 0 0 1 1 0 1 0 0 1 0 0 14 0 1634.9508 B2R823;Q9NRX1;F8WBJ6 B2R823 95 108 PNO1 RNA-binding protein PNO1 yes no 3 7.5503E-05 62.891 2 2 1.1025 1.0181 4.5958 4 Median 1.0094 1.049 3.8391 2 0 Median 1.2081 0.98897 3.7247 2 0 Median 79602000 35649000 43953000 48661000 23035000 25626000 30941000 12614000 18326000 6232 858 6377 16475;16476;16477;16478 25725;25726;25727;25728;25729 25725 5 IFTQLEEFR EDMEIAEGCFRHIKKIFTQLEEFRASELLR FRHIKKIFTQLEEFRASELLRSGLDRSKYL K I F F R A 0 1 0 0 0 1 2 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 9 0 1181.6081 B0AZM4;A8K6F0;A0A024R9L1;O60306 B0AZM4 1004 1012 AQR Intron-binding protein aquarius yes no 2 0.00049582 91.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5356900 5356900 0 5356900 5356900 0 0 0 0 6233 282 6378 16479 25730 25730 1 IFTSIGEDYDER TLRILFRPVASQLPRIFTSIGEDYDERVLP LPRIFTSIGEDYDERVLPSITTEILKSVVA R I F E R V 0 1 0 2 0 0 2 1 0 2 0 0 0 1 0 1 1 0 1 0 0 0 12 0 1443.6518 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 106 117 HEL-S-54e;PHB Prohibitin yes no 2 9.881E-23 156.48 2 3 2.7078 2.2761 32.893 5 Median 1.4366 1.6531 0.29157 2 0 Median 2.7348 2.334 27.063 3 0 Median 401530000 158330000 243200000 355390000 144490000 210890000 46138000 13832000 32306000 6234 730 6379 16480;16481;16482;16483;16484 25731;25732;25733;25734;25735;25736;25737;25738;25739;25740;25741;25742;25743;25744;25745;25746;25747 25738 17 IFTSLEPEHDLNDVCLYPNSGMLLTANETPK ADSRIVKMWNKNSGKIFTSLEPEHDLNDVC YPNSGMLLTANETPKMGIYYIPVLGPAPRW K I F P K M 1 0 3 2 1 0 3 1 1 1 5 1 1 1 3 2 3 0 1 1 0 0 31 0 3517.6745 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 305 335 NOL10 Nucleolar protein 10 yes no 3 0.0059207 22.008 2 1.7126 1.3841 14.052 2 Median NaN NaN NaN 0 0 Median 1.7126 1.3841 14.052 2 0 Median 17178000 5532700 11646000 0 0 0 17178000 5532700 11646000 6235 2000 6380 16485;16486 25748;25749 25749 2 IFVGGLSPDTPEEK PKRAKAMKTKEPVKKIFVGGLSPDTPEEKI KIFVGGLSPDTPEEKIREYFGGFGEVE___ K I F E K I 0 0 0 1 0 0 2 2 0 1 1 1 0 1 2 1 1 0 0 1 0 0 14 0 1487.7508 D6RF44;H0YA96;D6RAF8;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103;B4E0W4 D6RF44 86 99 HNRNPD;HNRPD Heterogeneous nuclear ribonucleoprotein D0 yes no 2 0.00035359 61.435 2 2 1.3677 1.2417 54.225 4 Median 1.9091 1.913 7.7223 2 0 Median 0.93973 0.76055 15.925 2 0 Median 38126000 13207000 24918000 33179000 10876000 22303000 4946400 2331200 2615200 6236 383 6381 16487;16488;16489;16490 25750;25751;25752;25753 25750 3 IFVGNVSAACTSQELR LVVEMSRPRPLNTWKIFVGNVSAACTSQEL FVGNVSAACTSQELRSLFERRGRVIECDVV K I F L R S 2 1 1 0 1 1 1 1 0 1 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1750.8672 A0A0S2Z4Z0;Q96PK6;A0A0S2Z567;A0A0A6YYI9;A0A0S2Z5V2;F8WDX3;A0A0A0MSL8;B8ZZ74 A0A0S2Z4Z0 81 96 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 2 0.0015643 63.181 1 2 0.72531 0.60179 NaN 1 Median NaN NaN NaN 0 0 Median 0.72531 0.60179 NaN 1 0 Median 30517000 27899000 2617400 20942000 20942000 0 9574400 6957000 2617400 6237 571 6382 16491;16492;16493 25754;25755;25756 25755 3 IFVNSNTDVAPFLR EVKDLASVSLKNPVRIFVNSNTDVAPFLRQ RIFVNSNTDVAPFLRQEFIRIRPNREGDRE R I F L R Q 1 1 2 1 0 0 0 0 0 1 1 0 0 2 1 1 1 0 0 2 0 0 14 0 1591.8358 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 392 405 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 4.9891E-22 161.17 2 2 0.78852 0.89515 6.4323 2 Median 0.78852 0.89515 6.4323 2 0 Median NaN NaN NaN 0 0 Median 220110000 140880000 79230000 188920000 109690000 79230000 31199000 31199000 0 6238 899;1099 6383 16494;16495;16496;16497 25757;25758;25759;25760;25761 25760 5 IFYHPETTQLMILSASEATVK ENAHKDFKKAVGACRIFYHPETTQLMILSA TTQLMILSASEATVKRVNILSDMHLRSIRT R I F V K R 2 0 0 0 0 1 2 0 1 2 2 1 1 1 1 2 3 0 1 1 0 0 21 0 2378.2192 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21;C9IZ22;C9JZE0;C9JY20 A0A0F7KYT8 159 179 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 2.5327E-08 67.866 1 1.5494 1.5932 NaN 1 Median 1.5494 1.5932 NaN 1 0 Median NaN NaN NaN 0 0 Median 17943000 7092500 10850000 17943000 7092500 10850000 0 0 0 6239 531 6384 16498 25762 25762 391 1 IFYQFLYNNNTR RKEKDTPNENRQKLRIFYQFLYNNNTRQQT KLRIFYQFLYNNNTRQQTEARDDLHCPWCT R I F T R Q 0 1 3 0 0 1 0 0 0 1 1 0 0 2 0 0 1 0 2 0 0 0 12 0 1591.7783 J3QQW9;Q15022;A8K1U9 J3QQW9 405 416 SUZ12 Polycomb protein SUZ12 yes no 2 8.1241E-05 96.89 1 1 1.1608 1.1652 NaN 1 Median 1.1608 1.1652 NaN 1 0 Median NaN NaN NaN 0 0 Median 23110000 6822900 16287000 17186000 6822900 10363000 5923500 0 5923500 6240 1336 6385 16499;16500 25763;25764;25765;25766;25767 25764 5 IFYVDTLK NQKLLAVSLLDCTVKIFYVDTLKFFLSLYG LLDCTVKIFYVDTLKFFLSLYGHKLPVICM K I F L K F 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 1 0 1 1 0 0 8 0 997.54843 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 575 582 WDR3 WD repeat-containing protein 3 yes no 2 0.0075577 92.491 2 1 0.93189 1.0692 5.5839 3 Plateau 0.92908 1.0614 2.1549 2 0 Median 1.1779 0.96706 NaN 1 0 Median 344950000 177510000 167440000 335660000 173190000 162470000 9286800 4323300 4963500 6241 1827 6386 16501;16502;16503 25768;25769;25770;25771;25772 25771 5 IGAEVYHHLK MILPVGASSFKEAMRIGAEVYHHLKGVI__ KEAMRIGAEVYHHLKGVI____________ R I G L K G 1 0 0 0 0 0 1 1 2 1 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1165.6244 K7EPM1;K7EKN2;B4DUJ6;E5RGZ4;D3DTL4;P13929 K7EPM1 184 193 ENO3 Enolase;Beta-enolase yes no 2 0.0063469 58.917 1 0.39802 0.4421 NaN 1 Median 0.39802 0.4421 NaN 1 0 Median NaN NaN NaN 0 0 Median 49794000 36086000 13708000 49794000 36086000 13708000 0 0 0 6242 1039 6387 16504 25773 25773 1 IGAWHPAR KLPRKTHRGLRKVARIGAWHPARVAFSVAR GLRKVARIGAWHPARVAFSVARAGQKGYHH R I G A R V 2 1 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 8 0 906.48242 B3KS36 B3KS36 205 212 yes yes 3 0.011701 40.098 1 0.90896 0.95307 NaN 1 Median 0.90896 0.95307 NaN 1 0 Median NaN NaN NaN 0 0 Median 22840000 11640000 11199000 22840000 11640000 11199000 0 0 0 6243 936 6388 16505 25774;25775 25775 2 IGCFFLHPR WKPPLNCKIYNYLNRIGCFFLHPRCSKRKD YNYLNRIGCFFLHPRCSKRKDAADFAICMH R I G P R C 0 1 0 0 1 0 0 1 1 1 1 0 0 2 1 0 0 0 0 0 0 0 9 0 1145.5804 Q4KMR5;E9PH99;Q9Y4E5;Q96JY2 Q4KMR5 938 946 ZNF451 Zinc finger protein 451 yes no 3 0.038627 34.387 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2597300 2597300 0 2597300 2597300 0 0 0 0 6244 1236 6389 16506 25776 25776 1 IGDFGLATK LKLGNLFLNEDLEVKIGDFGLATKVEYDGE EDLEVKIGDFGLATKVEYDGERKKTLCGTP K I G T K V 1 0 0 1 0 0 0 2 0 1 1 1 0 1 0 0 1 0 0 0 0 0 9 0 920.49673 P53350;B2R841;B4E083;Q59GD0;Q58A51 P53350 192 200 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 0.0019956 78.149 2 1.1287 1.1754 3.1336 2 Median 1.1287 1.1754 3.1336 2 0 Median NaN NaN NaN 0 0 Median 67392000 32634000 34758000 67392000 32634000 34758000 0 0 0 6245 1604 6390 16507;16508 25777;25778 25778 2 IGDFGLVTSLK LKPSNIFLVDTKQVKIGDFGLVTSLKNDGK KQVKIGDFGLVTSLKNDGKRTRSKGTLRYM K I G L K N 0 0 0 1 0 0 0 2 0 1 2 1 0 1 0 1 1 0 0 1 0 0 11 0 1148.6441 Q8IW76;B7ZKK7;P19525 Q8IW76 430 440 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.00015638 94.692 2 1 1.5287 1.7332 41.673 3 Plateau 1.4776 1.6282 8.8363 2 0 Median 1.0236 0.79761 NaN 1 0 Median 94869000 40619000 54250000 91268000 38720000 52548000 3601100 1899100 1702000 6246 1111 6391 16509;16510;16511 25779;25780;25781;25782;25783;25784;25785 25781 7 IGDFIDVSEGPLIPR EKASQNPERIVKLHRIGDFIDVSEGPLIPR IGDFIDVSEGPLIPRTSICFQYEVSAVHNL R I G P R T 0 1 0 2 0 0 1 2 0 3 1 0 0 1 2 1 0 0 0 1 0 0 15 0 1626.8617 C9JG87;Q9NYK5 C9JG87 247 261 MRPL39 39S ribosomal protein L39, mitochondrial yes no 2 6.4943E-07 97.911 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7729800 0 7729800 7729800 0 7729800 0 0 0 6247 1134 6392 16512;16513 25786;25787 25786 2 IGDLQAFQGHGAGNLAGLK ELPAQKWWHTGALYRIGDLQAFQGHGAGNL QAFQGHGAGNLAGLKGRLDYLSSLKVKGLV R I G L K G 3 0 1 1 0 2 0 5 1 1 3 1 0 1 0 0 0 0 0 0 0 0 19 0 1865.9748 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599;H0YFS2 B4E2Z3 108 126 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 0.0014244 32.366 2 1.793 1.4093 2.6943 2 Median NaN NaN NaN 0 0 Median 1.793 1.4093 2.6943 2 0 Median 6419300 2124000 4295300 0 0 0 6419300 2124000 4295300 6248 1072 6393 16514;16515 25788;25789;25790;25791 25790 4 IGDLTGYCTNPNR TKIADAIENKTTVYKIGDLTGYCTNPNRHQ YKIGDLTGYCTNPNRHQMGWAKRNVDHRPK K I G N R H 0 1 2 1 1 0 0 2 0 1 1 0 0 0 1 0 2 0 1 0 0 0 13 0 1479.6776 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 483 495 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.0020343 55.401 1 1 0.78339 0.75201 23.932 2 Median 0.8486 0.89066 NaN 1 0 Median 0.7232 0.63493 NaN 1 0 Median 13718000 7861400 5857000 11951000 6837300 5114000 1767100 1024100 743000 6249 291 6394 16516;16517 25792;25793;25794 25792 3 IGDTSVSYK SEQDQPMGGWEMIRKIGDTSVSYKYTSRYV WEMIRKIGDTSVSYKYTSRYVLKAGQTVTI K I G Y K Y 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 2 1 0 1 1 0 0 9 0 968.48148 P20700;B4DZT3 P20700 475 483 LMNB1 Lamin-B1 yes no 2 0.0010227 91.069 2 1 1.1376 1.3182 17.635 3 Plateau 1.1287 1.2967 2.3221 2 0 Median 1.2054 0.95667 NaN 1 0 Median 405510000 183330000 222190000 386560000 174530000 212030000 18953000 8799000 10154000 6250 1502 6395 16518;16519;16520 25795;25796;25797;25798 25795 4 IGDVVGSSGANQQTSGK VEAYQWSVSEGRWIKIGDVVGSSGANQQTS DVVGSSGANQQTSGKVLYEGKEFDYVFSID K I G G K V 1 0 1 1 0 2 0 4 0 1 0 1 0 0 0 3 1 0 0 2 0 0 17 0 1603.7802 Q9Y263;E5RIM3;H0YBW4 Q9Y263 377 393 PLAA Phospholipase A-2-activating protein yes no 2 1.0776E-18 120.84 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6781600 0 6781600 6781600 0 6781600 0 0 0 6251 2123 6396 16521 25799 25799 1 IGEEQSAEDAEDGPPELLFIHGGHTAK SSGTDRRLNVWDLSKIGEEQSAEDAEDGPP GPPELLFIHGGHTAKISDFSWNPNEPWVIC K I G A K I 3 0 0 2 0 1 5 4 2 2 2 1 0 1 2 1 1 0 0 0 0 0 27 0 2846.3359 Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JNZ6 Q6FHQ0 349 375 RBBP7 Histone-binding protein RBBP7 yes no 3;4 1.0444E-18 82.65 2 3 1.5026 1.1905 7.7136 5 Median 0.96262 1.0967 2.0661 2 0 Median 1.5188 1.2796 4.0852 3 0 Plateau 430060000 186290000 243770000 320430000 146100000 174330000 109630000 40188000 69443000 6252 1771 6397 16522;16523;16524;16525;16526 25800;25801;25802;25803;25804;25805;25806 25801 7 IGEEQSPEDAEDGPPELLFIHGGHTAK SSGTDRRLNVWDLSKIGEEQSPEDAEDGPP GPPELLFIHGGHTAKISDFSWNPNEPWVIC K I G A K I 2 0 0 2 0 1 5 4 2 2 2 1 0 1 3 1 1 0 0 0 0 0 27 0 2872.3515 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5;B4DRT0 Q09028 350 376 RBBP4 Histone-binding protein RBBP4 yes no 3;4 1.219E-06 47.73 3 2 1.1595 1.1191 31.748 4 Median 0.74432 0.8467 4.1224 2 0 Median 1.7638 1.4642 2.6793 2 0 Median 320710000 167800000 152910000 256670000 144710000 111950000 64046000 23088000 40958000 6253 1695 6398 16527;16528;16529;16530;16531 25807;25808;25809;25810;25811;25812;25813;25814;25815;25816 25811 10 IGEGTYGVVYK ______________________________ KIEKIGEGTYGVVYKGRHKTTGQVVAMKKI K I G Y K G 0 0 0 0 0 0 1 3 0 1 0 1 0 0 0 0 1 0 2 2 0 0 11 0 1184.6077 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;A0A024QZJ8;E5RIU6;B7Z3D6;K7ELV5;A0A024RB10;A0A024RB77;G3V5T9;P24941;E7ESI2;B4DDL9;A0A024R8R3;Q00526;G3V317 A0A024QZP7 10 20 CDC2;CDK1;DKFZp686L20222;CDK3;CDK2 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 no no 2 7.8582E-05 95.502 1 2 1.4347 1.1574 0.76035 2 Median NaN NaN NaN 0 0 Median 1.4347 1.1574 0.76035 2 0 Median 126120000 15536000 110580000 85522000 0 85522000 40594000 15536000 25058000 6254 25;318 6399 16532;16533;16534 25817;25818;25819;25820;25821 25817 5 IGEGVFGEVFQTIADHTPVAIK FSHCLPTEKLQRCEKIGEGVFGEVFQTIAD EVFQTIADHTPVAIKIIAIEGPDLVNGSHQ K I G I K I 2 0 0 1 0 1 2 3 1 3 0 1 0 2 1 0 2 0 0 3 0 0 22 0 2327.2161 A0PJ70;A8K9K0;Q8TF76 A0PJ70 490 511 GSG2 Serine/threonine-protein kinase haspin yes no 3 1.5729E-08 68.552 2 1.3345 1.4691 27.239 2 Median 1.3345 1.4691 27.239 2 0 Median NaN NaN NaN 0 0 Median 92229000 44993000 47236000 92229000 44993000 47236000 0 0 0 6255 646 6400 16535;16536 25822;25823 25822 2 IGEVDVEQHTLAK LGRPLPLHFLRRASKIGEVDVEQHTLAKYL SKIGEVDVEQHTLAKYLMELTMLDYDMVHF K I G A K Y 1 0 0 1 0 1 2 1 1 1 1 1 0 0 0 0 1 0 0 2 0 0 13 0 1437.7464 P14635;E9PC90;H1UBN2;H0YA62;Q9BWU8;Q9BWV0;Q9BWU9;Q9BPX9;Q9BWU7 P14635 312 324 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2;3 1.0291E-38 216.04 5 3 0.98092 0.88056 18.865 8 Median 0.77128 0.85294 24.53 5 0 Median 1.1118 0.90908 6.1631 3 0 Median 491030000 258470000 232560000 471380000 249170000 222210000 19655000 9298200 10357000 6256 1483 6401 16537;16538;16539;16540;16541;16542;16543;16544 25824;25825;25826;25827;25828;25829;25830;25831;25832;25833;25834 25831 10 IGEVWASK TVLTRSVFINNVLSKIGEVWASKEPINSTT INNVLSKIGEVWASKEPINSTTPFNSSKIE K I G S K E 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 1 0 1 0 0 8 0 888.47052 Q8WYP5;B3KVE5 Q8WYP5 1062 1069 AHCTF1 Protein ELYS yes no 2 0.027337 60.436 1 1 2.5321 1.994 NaN 1 Median NaN NaN NaN 0 0 Median 2.5321 1.994 NaN 1 0 Median 11529000 1107000 10422000 7655000 0 7655000 3874500 1107000 2767500 6257 1945 6402 16545;16546 25835;25836 25836 2 IGFDVVTLSGTR VDGFYTEEVRQGGRRIGFDVVTLSGTRGPL GRRIGFDVVTLSGTRGPLSRVGLEPPPGKR R I G T R G 0 1 0 1 0 0 0 2 0 1 1 0 0 1 0 1 2 0 0 2 0 0 12 0 1263.6823 Q5TDE9;Q5TDF0;Q9BSD7 Q5TDE9 48 59 C1orf57;NTPCR Cancer-related nucleoside-triphosphatase yes no 2 0.00018714 89.171 2 1.4293 1.4332 NaN 1 Median 1.4293 1.4332 NaN 1 0 Median NaN NaN NaN 0 0 Median 23456000 6680200 16776000 23456000 6680200 16776000 0 0 0 6258 1826 6403 16547;16548 25837;25838;25839 25838 3 IGFFNQQYAEQLR LTPTHGEMRKNHRLKIGFFNQQYAEQLRME LKIGFFNQQYAEQLRMEETPTEYLQRGFNL K I G L R M 1 1 1 0 0 3 1 1 0 1 1 0 0 2 0 0 0 0 1 0 0 0 13 0 1612.7998 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 690 702 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 2.8566E-13 125.75 2 2 0.69523 0.64747 24.512 4 Median 0.76146 0.8052 2.1075 2 0 Median 0.64516 0.52693 0.40494 2 0 Median 94227000 51906000 42321000 66684000 35819000 30865000 27542000 16087000 11456000 6259 1926 6404 16549;16550;16551;16552 25840;25841;25842;25843;25844;25845;25846;25847 25843 8 IGFIEEVK ENKSVKMMTQKGLYRIGFIEEVKAQILEMR TQKGLYRIGFIEEVKAQILEMRYTKGKLSM R I G V K A 0 0 0 0 0 0 2 1 0 2 0 1 0 1 0 0 0 0 0 1 0 0 8 0 933.51713 Q96P63;Q3SYB5 Q96P63 232 239 SERPINB12 Serpin B12 yes no 2 0.0049299 87.323 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6260 1982 6405 16553 25848 25848 1 IGFSVQPDR PNHAAFLLEDGRVCRIGFSVQPDRLELGKP DGRVCRIGFSVQPDRLELGKPDNNDGSKLN R I G D R L 0 1 0 1 0 1 0 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1017.5243 E7EMW7;O95071 E7EMW7 70 78 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.037468 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7949400 7949400 0 7949400 7949400 0 0 0 0 6261 1218 6406 16554 25849 25849 1 IGGALSVALPALLLR LLLDCRSRELYESARIGGALSVALPALLLR IGGALSVALPALLLRRLRRGSLSVRALLPG R I G L R R 3 1 0 0 0 0 0 2 0 1 5 0 0 0 1 1 0 0 0 1 0 0 15 0 1462.9235 Q6P9C2;B2RAL9;Q99956 Q6P9C2 38 52 DUSP9 Dual specificity protein phosphatase;Dual specificity protein phosphatase 9 yes no 2 2.3991E-07 107.79 1 0.63085 0.65232 NaN 1 Median 0.63085 0.65232 NaN 1 0 Median NaN NaN NaN 0 0 Median 21674000 13651000 8022700 21674000 13651000 8022700 0 0 0 6262 872 6407 16555 25850 25850 1 IGGGIDVPVPR RDQGGFGDRNEYGSRIGGGIDVPVPRHSVG YGSRIGGGIDVPVPRHSVGVVIGRSGEMIK R I G P R H 0 1 0 1 0 0 0 3 0 2 0 0 0 0 2 0 0 0 0 2 0 0 11 0 1078.6135 A0A087WTP3;Q92945;M0R0I5;B4DV73 A0A087WTP3 321 331 KHSRP Far upstream element-binding protein 2 yes no 2 0.00036511 84.213 2 1.8377 1.9118 0.20424 2 Median 1.8377 1.9118 0.20424 2 0 Median NaN NaN NaN 0 0 Median 49768000 15014000 34755000 49768000 15014000 34755000 0 0 0 6263 403 6408 16556;16557 25851;25852;25853 25853 3 IGGGPGDAADVQR RDLVKKFLKRNPSQRIGGGPGDAADVQRHP QRIGGGPGDAADVQRHPFFRHMNWDDLLAW R I G Q R H 2 1 0 2 0 1 0 4 0 1 0 0 0 0 1 0 0 0 0 1 0 0 13 0 1211.5895 A0A024R5J9;Q9BRS0;Q9UBS0 A0A024R5J9 35 47 RPS6KB2 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase beta-2 yes no 2 0.004177 62.408 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2529000 0 2529000 2529000 0 2529000 0 0 0 6264 183 6409 16558;16559 25854;25855 25854 2 IGGIGTVPVGR PTDKPLRLPLQDVYKIGGIGTVPVGRVETG DVYKIGGIGTVPVGRVETGVLKPGMVVTFA K I G G R V 0 1 0 0 0 0 0 4 0 2 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1024.6029 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q9NZS6;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q05639;Q14222;Q59GP5;Q53HR1 Q6IPT9 256 266 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2 3.3284E-08 120.12 4 2 1.9789 2.0185 38.892 4 Median 2.3684 2.8223 1.3407 2 0 Median 1.6544 1.4395 1.7543 2 0 Median 5390200000 1570300000 3819900000 5069000000 1452100000 3616900000 321190000 118210000 202970000 6265 1658;1790 6410 16560;16561;16562;16563;16564;16565 25856;25857;25858;25859;25860;25861;25862;25863;25864;25865;25866;25867;25868;25869;25870;25871;25872;25873 25863 18 IGGVQQDTILAEGLHFR VFTVEGGHRAIFFNRIGGVQQDTILAEGLH GVQQDTILAEGLHFRIPWFQYPIIYDIRAR R I G F R I 1 1 0 1 0 2 1 3 1 2 2 0 0 1 0 0 1 0 0 1 0 0 17 0 1852.9795 J3KPX7;Q99623;F5GY37;B4DW05;F5H3X6;F5H0C5;F5H2D2 J3KPX7 55 71 PHB2 Prohibitin-2 yes no 2;3 1.5872E-57 173.03 3 3 1.6202 1.7432 34.633 6 Median 1.4968 1.7448 42.725 3 0 Plateau 2.387 2.0611 18.539 3 0 Median 1044900000 413480000 631430000 879390000 364340000 515050000 165530000 49148000 116380000 6266 1328 6411 16566;16567;16568;16569;16570;16571 25874;25875;25876;25877;25878;25879;25880;25881;25882;25883;25884;25885;25886 25877 13 IGHPAPNFK ______________________________ SSGNAKIGHPAPNFKATAVMPDGQFKDISL K I G F K A 1 0 1 0 0 0 0 1 1 1 0 1 0 1 2 0 0 0 0 0 0 0 9 0 979.52395 Q06830;A0A0A0MSI0;B2R4P2;A0A0A0MRQ5 Q06830 8 16 PRDX1 Peroxiredoxin-1 yes no 2;3 3.2972E-09 130.77 4 3.0896 3.4938 1.912 2 Median 3.0896 3.4938 1.912 2 0 Median NaN NaN NaN 0 0 Median 353850000 69783000 284070000 353850000 69783000 284070000 0 0 0 6267 1690 6412 16572;16573;16574;16575 25887;25888;25889;25890;25891;25892 25892 6 IGHVGMQIEHIIENIVAVTK TVLNISKSGSCSAIRIGHVGMQIEHIIENI MQIEHIIENIVAVTKGLSEKLPEKWESVKL R I G T K G 1 0 1 0 0 1 2 2 2 5 0 1 1 0 0 0 1 0 0 3 0 0 20 0 2200.2038 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9 O76021 216 235 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 4 5.2401E-07 70.094 2 0.57885 0.46622 4.592 2 Median NaN NaN NaN 0 0 Median 0.57885 0.46622 4.592 2 0 Median 52343000 35012000 17330000 0 0 0 52343000 35012000 17330000 6268 1415 6413 16576;16577 25893;25894;25895 25895 1108 3 IGIEIIK IPALDSLTPANEDQKIGIEIIKRTLKIPAM TPANEDQKIGIEIIKRTLKIPAMTIAKNAG K I G I K R 0 0 0 0 0 0 1 1 0 4 0 1 0 0 0 0 0 0 0 0 0 0 7 0 784.50584 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6 B7Z597 454 460 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.026792 81.297 2 1.8349 1.8789 0.70588 2 Median 1.8349 1.8789 0.70588 2 0 Median NaN NaN NaN 0 0 Median 41976000 13684000 28292000 41976000 13684000 28292000 0 0 0 6269 143 6414 16578;16579 25896;25897;25898 25896 3 IGIFGQDEDVTSK ITGDNKGTAVAICRRIGIFGQDEDVTSKAF RRIGIFGQDEDVTSKAFTGREFDELNPSAQ R I G S K A 0 0 0 2 0 1 1 2 0 2 0 1 0 1 0 1 1 0 0 1 0 0 13 0 1407.6882 A0A0S2Z3L2;P16615;H7C5W9 A0A0S2Z3L2 638 650 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 0.00013338 89.805 2 1.8488 1.8952 0.82858 2 Median 1.8488 1.8952 0.82858 2 0 Median NaN NaN NaN 0 0 Median 43054000 12001000 31053000 43054000 12001000 31053000 0 0 0 6270 554 6415 16580;16581 25899;25900 25900 2 IGILQQLLR HSNRTPSLQEVKIQRIGILQQLLRQEVEGL EVKIQRIGILQQLLRQEVEGLVGGQCVPLN R I G L R Q 0 1 0 0 0 2 0 1 0 2 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1052.6706 F8W1U0;F8W130;Q12815 F8W1U0 143 151 TROAP Tastin yes no 2 0.002233 81.784 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1763800 0 1763800 1763800 0 1763800 0 0 0 6271 1265 6416 16582;16583 25901;25902 25902 2 IGKPHTVPCK KLSIVPVRRGYWGNKIGKPHTVPCKVTGRC YWGNKIGKPHTVPCKVTGRCGSVLVRLIPA K I G C K V 0 0 0 0 1 0 0 1 1 1 0 2 0 0 2 0 1 0 0 1 0 0 10 1 1135.6172 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PMM9;I3L404;E9PPT0;Q8NI61;E9PM36 P15880 174 183 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2;3 0.00089697 105.98 1 4 0.76354 0.66747 13.022 5 Median 0.7619 0.87922 NaN 1 0 Median 0.77668 0.65789 3.4028 4 0 Median 124380000 65711000 58670000 29918000 13543000 16375000 94463000 52168000 42295000 6272 1485 6417 16584;16585;16586;16587;16588 25903;25904;25905;25906;25907;25908 25904 6 IGLETSLR EDVEMSEDAYTVLTRIGLETSLRYAIQLIT AYTVLTRIGLETSLRYAIQLITAASLVCRK R I G L R Y 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 8 0 887.50763 Q9Y230;B3KNL2 Q9Y230 393 400 RUVBL2 RuvB-like 2 yes no 2 0.028018 60.478 3 0.92668 0.78617 NaN 1 Median NaN NaN NaN 0 0 Median 0.92668 0.78617 NaN 1 0 Median 29507000 19977000 9530200 0 0 0 29507000 19977000 9530200 6273 2120 6418 16589;16590;16591 25909;25910;25911 25909 3 IGLFNSSADR MLDDSSDPILTTIRRIGLFNSSADRVKVIF TTIRRIGLFNSSADRVKVIFHPEFLSSTSP R I G D R V 1 1 1 1 0 0 0 1 0 1 1 0 0 1 0 2 0 0 0 0 0 0 10 0 1078.5407 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 463 472 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.0033968 64.711 1 2 0.50111 0.41546 6.544 2 Median NaN NaN NaN 0 0 Median 0.50111 0.41546 6.544 2 0 Median 33465000 21997000 11468000 0 0 0 33465000 21997000 11468000 6274 1479 6419 16592;16593;16594 25912;25913;25914;25915;25916 25913 5 IGLFSHAEIK ERIEDRLPELEQLERIGLFSHAEIKAIIKK EQLERIGLFSHAEIKAIIKKASDLEYKIQR R I G I K A 1 0 0 0 0 0 1 1 1 2 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1113.6182 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 22 31 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 3 0.0045058 48.981 3 0.93733 0.96214 7.2612 2 Median 0.93733 0.96214 7.2612 2 0 Median NaN NaN NaN 0 0 Median 60631000 23480000 37152000 60631000 23480000 37152000 0 0 0 6275 925 6420 16595;16596;16597 25917;25918;25919 25918 3 IGLIQGNR APAAGMNAAVRSTVRIGLIQGNRVLVVHDG AVRSTVRIGLIQGNRVLVVHDGFEGLAKGQ R I G N R V 0 1 1 0 0 1 0 2 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 0 869.5083 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9;F8VP00;P78457 A0A024R0Y5 425 432 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.0061719 86.086 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46881000 0 46881000 46881000 0 46881000 0 0 0 6276 61 6421 16598;16599 25920;25921 25920 2 IGLSNHVR SEHTCQLCGGWFDTKIGLSNHVRGHLKRLG GGWFDTKIGLSNHVRGHLKRLGKTKWDAHK K I G V R G 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 894.50355 A7E234;Q9H582;Q9NVH8;Q9H8J8;Q9NZF0;A0A087WZL9 A7E234 1050 1057 ZNF644 Zinc finger protein 644 yes no 3 0.020615 33.263 1 0.66191 0.68671 NaN 1 Median 0.66191 0.68671 NaN 1 0 Median NaN NaN NaN 0 0 Median 5688400 3353200 2335200 5688400 3353200 2335200 0 0 0 6277 693 6422 16600 25922 25922 1 IGNVEISQVTIVGIIR ISQLLSATLVDEVFRIGNVEISQVTIVGII GNVEISQVTIVGIIRHAEKAPTNIVYKIDD R I G I R H 0 1 1 0 0 1 1 2 0 5 0 0 0 0 0 1 1 0 0 3 0 0 16 0 1710.004 B2R7E8;P15927;Q5TEJ7;B4DQD9 B2R7E8 66 81 RPA2 Replication protein A 32 kDa subunit yes no 2 0.02134 28.053 1 0.32843 0.28502 NaN 1 Median NaN NaN NaN 0 0 Median 0.32843 0.28502 NaN 1 0 Median 2421500 1856200 565320 0 0 0 2421500 1856200 565320 6278 850 6423 16601 25923 25923 1 IGPILDNSTLQSEVKPILEK PVANVRFNVAKSLQKIGPILDNSTLQSEVK DNSTLQSEVKPILEKLTQDQDVDVKYFAQE K I G E K L 0 0 1 1 0 1 2 1 0 3 3 2 0 0 2 2 1 0 0 1 0 0 20 1 2193.2256 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;E9PH38;B4E1Q0 B4DQY1 513 532 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 3 5.4275E-10 98.543 2 2 1.2625 1.3398 19.421 4 Median 1.2625 1.4758 0.072704 2 0 Median 1.2877 1.0931 15.179 2 0 Median 115810000 53112000 62703000 79336000 34539000 44798000 36478000 18573000 17905000 6279 723 6424 16602;16603;16604;16605 25924;25925;25926;25927;25928;25929;25930 25930 7 IGPILDTNALQGEVKPVLQK QVANVRFNVAKSLQKIGPILDTNALQGEVK DTNALQGEVKPVLQKLGQDEDMDVKYFAQE K I G Q K L 1 0 1 1 0 2 1 2 0 2 3 2 0 0 2 0 1 0 0 2 0 0 20 1 2132.2205 A8K8B0;P30154;B7Z1G3;H0YDG7 A8K8B0 559 578 PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 3 3.296E-06 51.819 1 3.5401 4.0364 NaN 1 Median 3.5401 4.0364 NaN 1 0 Median NaN NaN NaN 0 0 Median 7389500 2320500 5069000 7389500 2320500 5069000 0 0 0 6280 774 6425 16606 25931 25931 1 IGPLGLSPK CTGGEVGATSALAPKIGPLGLSPKKVGDDI SALAPKIGPLGLSPKKVGDDIAKATGDWKG K I G P K K 0 0 0 0 0 0 0 2 0 1 2 1 0 0 2 1 0 0 0 0 0 0 9 0 880.5382 P30050;Q59FI9;D3DS95;Q76P68 P30050 32 40 RPL12;hCG_21173;cICK0721Q.2 60S ribosomal protein L12 yes no 2 0.00010107 110.03 2 0.95921 1.1264 2.2283 2 Median 0.95921 1.1264 2.2283 2 0 Median NaN NaN NaN 0 0 Median 669300000 336580000 332720000 669300000 336580000 332720000 0 0 0 6281 1532 6426 16607;16608 25932;25933;25934;25935;25936;25937 25934 6 IGQGYLIK KGYHHRTEINKKIYKIGQGYLIKDGKLIKN INKKIYKIGQGYLIKDGKLIKNNASTDYDL K I G I K D 0 0 0 0 0 1 0 2 0 2 1 1 0 0 0 0 0 0 1 0 0 0 8 0 890.52255 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;B5MCW2;B3KS36 P39023 287 294 RPL3;rpl3 60S ribosomal protein L3 no no 2 0.00071567 128.48 2 2 1.0422 1.0455 15.747 4 Median 1.0112 1.1993 0.84429 2 0 Median 1.078 0.91316 0.58435 2 0 Median 1519000000 744330000 774680000 1399000000 688370000 710600000 120040000 55961000 64080000 6282 1554;936 6427 16609;16610;16611;16612 25938;25939;25940;25941;25942;25943 25939 6 IGQQPQQPGAPPQQDYTK GQSDYTKAWEEYYKKIGQQPQQPGAPPQQD QPQQPGAPPQQDYTKAWEEYYKKQAQVATG K I G T K A 1 0 0 1 0 6 0 2 0 1 0 1 0 0 4 0 1 0 1 0 0 0 18 0 1979.9701 A0A087WTP3;Q92945;M0QYG1;M0R0C6 A0A087WTP3 629 646 KHSRP Far upstream element-binding protein 2 yes no 2 0.0003609 46.069 2 2.4547 2.4145 NaN 1 Median 2.4547 2.4145 NaN 1 0 Median NaN NaN NaN 0 0 Median 9045300 3161000 5884300 9045300 3161000 5884300 0 0 0 6283 403 6428 16613;16614 25944;25945;25946;25947 25944 4 IGRPSETGIIGIIDPECR SIDIITRAHGNVQDRIGRPSETGIIGIIDP PSETGIIGIIDPECRMIGLRLYDGLFKVIP R I G C R M 0 2 0 1 1 0 2 3 0 5 0 0 0 0 2 1 1 0 0 0 0 0 18 1 1982.0255 Q16531;F5GY55;B7Z2A1;F5H2L3;F5GWI0;F5GZY8 Q16531 112 129 DDB1 DNA damage-binding protein 1 yes no 3 1.3454E-05 66.893 2 2 0.85778 0.8389 24.769 4 Median 0.70555 0.79019 9.4851 2 0 Median 1.188 1.0407 31.502 2 0 Median 151240000 83728000 67514000 109450000 62404000 47043000 41795000 21324000 20471000 6284 1770 6429 16615;16616;16617;16618 25948;25949;25950;25951;25952;25953 25948 6 IGSCTQQDVELHVQK SIVDVEGVVRKVNQKIGSCTQQDVELHVQK IGSCTQQDVELHVQKIYVISLAEPRLPLQL K I G Q K I 0 0 0 1 1 3 1 1 1 1 1 1 0 0 0 1 1 0 0 2 0 0 15 0 1740.8465 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9;H7C278 D3DP78 94 108 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 1.9215E-05 70.197 1 1 1.0369 0.9372 25.209 2 Median 1.1112 1.1201 NaN 1 0 Median 0.96748 0.78418 NaN 1 0 Median 30758000 13468000 17290000 28025000 12022000 16003000 2733000 1446200 1286800 6285 610 6430 16619;16620 25954;25955 25954 2 IGSFAEPSSVSFSSK PQVHNTTSRELNVSKIGSFAEPSSVSFSSK IGSFAEPSSVSFSSKEALSFPHLHLRGQRN K I G S K E 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 6 0 0 0 1 0 0 15 0 1528.7409 Q03164 Q03164 2348 2362 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.00021929 84.169 2 1 0.91109 0.96146 35.513 3 Median 0.89167 0.9348 3.9774 2 0 Median 2.1058 1.7259 NaN 1 0 Median 64159000 28326000 35833000 55414000 25687000 29727000 8744900 2639300 6105600 6286 1680 6431 16621;16622;16623 25956;25957;25958;25959;25960 25957 5 IGSLASGNVR APKPQDKKSMGLPPRIGSLASGNVRSLPSQ GLPPRIGSLASGNVRSLPSQQMVNRLSIPK R I G V R S 1 1 1 0 0 0 0 2 0 1 1 0 0 0 0 2 0 0 0 1 0 0 10 0 972.53524 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 287 296 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 3.5718E-05 99.442 2 0.71025 0.78618 11.057 2 Median 0.71025 0.78618 11.057 2 0 Median NaN NaN NaN 0 0 Median 126860000 75522000 51335000 126860000 75522000 51335000 0 0 0 6287 878 6432 16624;16625 25961;25962;25963 25963 3 IGSLIDVNQSK EIVIGDEHISFTTSKIGSLIDVNQSKDPEG TTSKIGSLIDVNQSKDPEGLRVFYYLVQDL K I G S K D 0 0 1 1 0 1 0 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1172.6401 F5H6P7;A0A023T6R1;P61326;Q96A72 F5H6P7 60 70 MAGOHB;FLJ10292;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 yes no 2 7.9598E-08 112.71 2 1 1.955 2.1191 42.299 3 Plateau 1.9297 2.0832 2.414 2 0 Median 1.2846 1.0019 NaN 1 0 Median 75479000 29668000 45811000 71850000 27934000 43916000 3628400 1734100 1894300 6288 3 6433 16626;16627;16628 25964;25965;25966;25967 25966 4 IGTFDLK NAVYDFFIGRELNPRIGTFDLKYFCELRPG IGRELNPRIGTFDLKYFCELRPGLIGWVVI R I G L K Y 0 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 7 0 792.43815 Q14739;A0A024R3R5 Q14739 378 384 LBR Lamin-B receptor yes no 2 0.027156 73.975 2 1.3228 1.4252 NaN 1 Median 1.3228 1.4252 NaN 1 0 Median NaN NaN NaN 0 0 Median 47495000 15220000 32275000 47495000 15220000 32275000 0 0 0 6289 1743 6434 16629;16630 25968;25969;25970 25969 3 IGTSTSFDSGIAGLSSISQCTSSSQLDETSHR ELSTSLKRSVYIESRIGTSTSFDSGIAGLS SQCTSSSQLDETSHRWAQPDTAPLPVPANI R I G H R W 1 1 0 2 1 2 1 3 1 3 2 0 0 1 0 10 4 0 0 0 0 0 32 0 3315.5161 O95235 O95235 251 282 KIF20A Kinesin-like protein KIF20A yes yes 3 5.2051E-31 94.495 2 2 1.4117 1.2032 27.803 4 Linear 0.669 0.71275 7.7826 2 0 Median 1.3217 1.1451 3.2459 2 0 Median 164890000 77028000 87860000 54541000 31679000 22863000 110350000 45349000 64997000 6290 1421 6435 16631;16632;16633;16634 25971;25972;25973;25974;25975;25976;25977;25978 25975 8 IGTTPDIILDDLLETDR YLYLSTMERSELAKKIGTTPDIILDDLLET TTPDIILDDLLETDRVTAHF__________ K I G D R V 0 1 0 4 0 0 1 1 0 3 3 0 0 0 1 0 3 0 0 0 0 0 17 0 1898.9837 D3DWL9;Q10570;A0A087X101;Q9C0J6 D3DWL9 1344 1360 CPSF1;P/cl.18 Cleavage and polyadenylation specificity factor subunit 1 yes no 2 0.054061 36.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6291 1198 6436 16635 25979 25979 1 IGTVSIFHMSDSYSETPLEDFVPQK VTPNEGLTVSFPFGKIGTVSIFHMSDSYSE DSYSETPLEDFVPQKVVRCYILSTADNVLT K I G Q K V 0 0 0 2 0 1 2 1 1 2 1 1 1 2 2 4 2 0 1 2 0 0 25 0 2826.3422 Q14690 Q14690 1255 1279 PDCD11 Protein RRP5 homolog yes yes 3 0.023559 17.216 1 1.8025 1.4235 NaN 1 Median NaN NaN NaN 0 0 Median 1.8025 1.4235 NaN 1 0 Median 6031300 2409400 3621900 0 0 0 6031300 2409400 3621900 6292 1741 6437 16636 25980 25980 1 IGVDLIMK FTPLTVKYAYYDTERIGVDLIMKTCFSPNR AYYDTERIGVDLIMKTCFSPNRVIGLSSDL R I G M K T 0 0 0 1 0 0 0 1 0 2 1 1 1 0 0 0 0 0 0 1 0 0 8 0 887.51502 B4DMT5;B3KSH1;O00303;B4DEW9 B4DMT5 197 204 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2 0.0035901 75.109 2 2.3011 2.3433 NaN 1 Median 2.3011 2.3433 NaN 1 0 Median NaN NaN NaN 0 0 Median 27000000 3835600 23164000 27000000 3835600 23164000 0 0 0 6293 939 6438 16637;16638 25981;25982 25982 768 2 IGVITNR TGNLCMVTGGANLGRIGVITNRERHPGSFD TGGANLGRIGVITNRERHPGSFDVVHVKDA R I G N R E 0 1 1 0 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 7 0 771.46029 B2R491;P62701;Q96IR1;Q53HV1 B2R491 192 198 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 0.0076797 128.82 2 1 1.1075 1.2938 23.905 3 Plateau 1.1062 1.3012 0.80248 2 0 Median 0.9855 0.86016 NaN 1 0 Median 1132200000 493770000 638420000 1046400000 450310000 596140000 85740000 43462000 42278000 6294 824 6439 16639;16640;16641 25983;25984;25985;25986;25987;25988 25986 6 IGVLDEGK RRLFEGNALLRRLVRIGVLDEGKMKLDYIL LLRRLVRIGVLDEGKMKLDYILGLKIEDFL R I G G K M 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 84 91 RPS9 40S ribosomal protein S9 yes no 2 0.0049843 91.9 2 0.8726 1.0341 8.8876 2 Median 0.8726 1.0341 8.8876 2 0 Median NaN NaN NaN 0 0 Median 1680800000 857860000 822960000 1680800000 857860000 822960000 0 0 0 6295 157 6440 16642;16643 25989;25990;25991 25989 3 IGVMSLIR GVPREGLSRQHVLTRIGVMSLIRKKVQEFE RQHVLTRIGVMSLIRKKVQEFEHVNGRWSM R I G I R K 0 1 0 0 0 0 0 1 0 2 1 0 1 0 0 1 0 0 0 1 0 0 8 0 887.52626 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1489 1496 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0027501 79.451 4 1.3462 1.4296 0.031145 2 Median 1.3462 1.4296 0.031145 2 0 Median NaN NaN NaN 0 0 Median 46184000 20550000 25634000 46184000 20550000 25634000 0 0 0 6296 515 6441 16644;16645;16646;16647 25992;25993;25994;25995;25996 25993 376 5 IGVPSATEIIK QLVQVEQKAGIKFKRIGVPSATEIIKASSK KFKRIGVPSATEIIKASSKDAIRLLDSVPP R I G I K A 1 0 0 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 1 0 0 11 0 1126.6598 Q9NR30 Q9NR30 563 573 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00022817 91.584 3 1.078 1.2104 1.2981 2 Median 1.078 1.2104 1.2981 2 0 Median NaN NaN NaN 0 0 Median 250170000 134010000 116160000 250170000 134010000 116160000 0 0 0 6297 2065 6442 16648;16649;16650 25997;25998;25999;26000;26001;26002;26003 25998 7 IGYQVTAMIGHTNVVVPR SYEALVQHVIEDHERIGYQVTAMIGHTNVV QVTAMIGHTNVVVPRSKPLMLIAPKPQDKK R I G P R S 1 1 1 0 0 1 0 2 1 2 0 0 1 0 1 0 2 0 1 4 0 0 18 0 1954.0459 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 247 264 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.015126 40.602 1 2 2.0193 1.7564 NaN 1 Median NaN NaN NaN 0 0 Median 2.0193 1.7564 NaN 1 0 Median 16724000 13263000 3461200 12457000 12457000 0 4267100 805890 3461200 6298 878 6443;6444 16651;16652;16653 26004;26005;26006 26004 685 3 IGYSSPLTLSDQSSK LELTAEISCFTYGCRIGYSSPLTLSDQSSK IGYSSPLTLSDQSSKIKKGSKGDCTVLKPT R I G S K I 0 0 0 1 0 1 0 1 0 1 2 1 0 0 1 5 1 0 1 0 0 0 15 0 1581.7886 Q8TAF6;O60488;B4DH39 Q8TAF6 299 313 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 9.1655E-06 93.623 3 2 1.2489 1.0044 39.781 3 Median 1.9938 1.9627 NaN 1 0 Median 1.2351 0.98614 2.5949 2 0 Median 69202000 24226000 44976000 60214000 20455000 39759000 8987600 3770700 5216800 6299 1394 6445 16654;16655;16656;16657;16658 26007;26008;26009;26010;26011;26012;26013;26014;26015;26016 26009 10 IGYSSPQTLADQSSK LELSAELVCLSHGCRIGYSSPQTLADQSSK IGYSSPQTLADQSSKIKKGSKGDTSMLKPT R I G S K I 1 0 0 1 0 2 0 1 0 1 1 1 0 0 1 4 1 0 1 0 0 0 15 0 1580.7682 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6 B3KN05 338 352 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 5.9182E-06 96.067 2 2 1.2625 1.3779 21.996 4 Linear 1.255 1.3445 3.6146 2 0 Median 1.1521 0.92073 2.2074 2 0 Median 79175000 40052000 39123000 70681000 36099000 34582000 8494100 3953200 4540900 6300 150 6446 16659;16660;16661;16662 26017;26018;26019;26020;26021 26018 5 IHAGPITK HIDLPNEQARLDILKIHAGPITKHGEIDYE ARLDILKIHAGPITKHGEIDYEAIVKLSDG K I H T K H 1 0 0 0 0 0 0 1 1 2 0 1 0 0 1 0 1 0 0 0 0 0 8 0 835.49159 V9HW24;A0A087X2I1;P62333 V9HW24 315 322 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 0.0021113 102.77 1 3.4799 3.7117 NaN 1 Median 3.4799 3.7117 NaN 1 0 Median NaN NaN NaN 0 0 Median 36609000 9824100 26785000 36609000 9824100 26785000 0 0 0 6301 454 6447 16663 26022 26022 1 IHCLENVDK LSGERLPKPTKGRMRIHCLENVDKALQFLK TKGRMRIHCLENVDKALQFLKEQRVHLENM R I H D K A 0 0 1 1 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1126.5441 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1;A4QPE4;B2RMN7;A0A024R674;Q59FP5;P11277;O15020 D6W5C0 24 32 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2 no no 2 0.03016 45.972 1 1.4346 1.4534 NaN 1 Median 1.4346 1.4534 NaN 1 0 Median NaN NaN NaN 0 0 Median 9050300 3934000 5116300 9050300 3934000 5116300 0 0 0 6302 415;1372 6448 16664 26023 26023 1 IHDPQLLTER DMFMRGEEILSGAQRIHDPQLLTERALHHG SGAQRIHDPQLLTERALHHGIDLEKIKAYI R I H E R A 0 1 0 1 0 1 1 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1220.6513 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 399 408 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2;3 0.0055936 47.559 2 1.1474 1.1876 NaN 1 Median 1.1474 1.1876 NaN 1 0 Median NaN NaN NaN 0 0 Median 28569000 9291700 19278000 28569000 9291700 19278000 0 0 0 6303 610 6449 16665;16666 26024;26025 26024 2 IHETIESINQLK ASTTNQQEIASLDVKIHETIESINQLKTQR DVKIHETIESINQLKTQRDFMLSFSTDPQD K I H L K T 0 0 1 0 0 1 2 0 1 3 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1423.7671 J3KMX2;B9EGA3;Q92925 J3KMX2 365 376 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 no no 2 0.028718 48.028 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4833800 4833800 0 4833800 4833800 0 0 0 0 6304 1120 6450 16667 26026 26026 1 IHFFLSK TIAQGKGQKLCEIERIHFFLSKKKTDELRN QKLCEIERIHFFLSKKKTDELRNLHKLLYN R I H S K K 0 0 0 0 0 0 0 0 1 1 1 1 0 2 0 1 0 0 0 0 0 0 7 0 890.50142 B4DNW3;P35659;B4DFG0;D6RDA2;D6R9L5 P35659 94 100 DEK Protein DEK no no 2 0.0099339 124.37 3 2 0.75519 0.73739 6.7783 5 Median 0.677 0.78145 6.8119 3 0 Median 0.85096 0.72238 1.982 2 0 Median 572080000 339830000 232250000 447710000 273040000 174680000 124370000 66795000 57573000 6305 1546;1018 6451 16668;16669;16670;16671;16672 26027;26028;26029;26030;26031;26032;26033;26034;26035;26036;26037;26038;26039;26040;26041;26042;26043;26044;26045 26036 19 IHFGQITSNQMLVPVIEK SDVELICRCLFFLLRIHFGQITSNQMLVPV GQITSNQMLVPVIEKLRETTISKVSQVRDV R I H E K L 0 0 1 0 0 2 1 1 1 3 1 1 1 1 1 1 1 0 0 2 0 0 18 0 2053.103 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 862 879 WDR3 WD repeat-containing protein 3 yes no 3 1.3693E-05 56.817 2 1 1.3225 1.4579 25.734 3 Median 1.2347 1.3446 11.439 2 0 Median 2.5677 2.0529 NaN 1 0 Median 91025000 37725000 53300000 82112000 35193000 46919000 8913200 2532300 6380900 6306 1827 6452;6453 16673;16674;16675 26046;26047;26048;26049;26050;26051 26046 1684 6 IHFPDFSTR DYNPNKTNRPFISQKIHFPDFSTRDIHRNY PFISQKIHFPDFSTRDIHRNYVDCVRWLGD K I H T R D 0 1 0 1 0 0 0 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 9 0 1118.5509 O75530;B4DVW7 O75530 294 302 EED Polycomb protein EED yes no 2;3 0.003337 49.715 2 2 1.4064 1.3026 17.234 4 Median 1.11 1.133 3.9151 2 0 Median 1.7509 1.5151 5.5469 2 0 Median 42762000 18542000 24220000 32851000 14701000 18151000 9910700 3841100 6069600 6307 1407 6454 16676;16677;16678;16679 26052;26053;26054;26055;26056;26057 26052 6 IHFPLATYAPVISAEK VDLTEFQTNLVPYPRIHFPLATYAPVISAE HFPLATYAPVISAEKAYHEQLSVAEITNAC R I H E K A 3 0 0 0 0 0 1 0 1 2 1 1 0 1 2 1 1 0 1 1 0 0 16 0 1755.956 B3KT06;B3KPS3;P68363;B4DDU2;F8VVB9;C9JDS9;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 230 245 TUBA1B;TUBA4A;TUBA1C;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2;3 2.1452E-18 136.93 4 4 1.3561 2.0373 29.913 8 Linear 1.5081 1.7477 2.0695 4 0 Median 1.2225 1.0033 5.0285 4 0 Median 1816200000 749530000 1066700000 1606600000 656020000 950630000 209540000 93515000 116020000 6308 922;1257;1659;1869 6455 16680;16681;16682;16683;16684;16685;16686;16687 26058;26059;26060;26061;26062;26063;26064;26065;26066;26067;26068;26069;26070;26071;26072;26073;26074;26075;26076;26077;26078;26079;26080;26081;26082;26083;26084;26085;26086;26087;26088;26089;26090;26091;26092 26065 35 IHGSPLQK TKVLYDFNKILENGRIHGSPLQKLVIANFD KILENGRIHGSPLQKLVIANFDDEQIWQQL R I H Q K L 0 0 0 0 0 1 0 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 8 0 878.4974 B3KPV5;O00566;U3KQ48 B3KPV5 58 65 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 0.00095807 123.69 2 1.2783 1.0386 12.01 2 Median NaN NaN NaN 0 0 Median 1.2783 1.0386 12.01 2 0 Median 27117000 12457000 14660000 0 0 0 27117000 12457000 14660000 6309 924 6456 16688;16689 26093;26094;26095 26093 3 IHGTEEGQQILK LQLQDCSIFIKIIDRIHGTEEGQQILKQPV IDRIHGTEEGQQILKQPVSERLDFVCSFLQ R I H L K Q 0 0 0 0 0 2 2 2 1 2 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1351.7096 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;G1UI36;F5H2F3;F5H3L6;F5H0Z7;F5H763;Q86XH4;F5GZW1;F5H1L0;F8W6T3;F5GWK2;F5H073;F5H068;F5H7R5;F5H4Y4;F5GWA2;A8K394;Q4LE64;Q14980 Q4LE64 43 54 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 1.0737E-17 139.15 3 2 0.98522 0.9878 20.643 5 Median 0.90052 0.93636 9.0015 3 0 Median 1.6199 1.2961 9.4521 2 0 Median 63070000 34687000 28383000 54355000 31106000 23249000 8714700 3581100 5133600 6310 186;1747;718 6457 16690;16691;16692;16693;16694 26096;26097;26098;26099;26100;26101;26102;26103;26104 26098 8 IHGVGFK NEVVTREYTINIHKRIHGVGFKKRAPRALK YTINIHKRIHGVGFKKRAPRALKEIRKFAM R I H F K K 0 0 0 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 756.42826 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 21 27 RPL31 60S ribosomal protein L31 yes no 1;2 0.016852 98.03 3 2 0.84241 0.90784 19.985 5 Median 0.88164 1.0521 7.853 3 0 Plateau 0.83175 0.69911 1.3931 2 0 Median 2204500000 1161600000 1042900000 2101800000 1106400000 995350000 102660000 55161000 47501000 6311 825 6458 16695;16696;16697;16698;16699 26105;26106;26107;26108;26109;26110;26111;26112;26113 26105 8 IHIDLPNEQAR TLDPALLRPGRLDRKIHIDLPNEQARLDIL LDRKIHIDLPNEQARLDILKIHAGPITKHG K I H A R L 1 1 1 1 0 1 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 0 11 0 1304.6837 V9HW24;A0A087X2I1;P62333 V9HW24 299 309 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2;3 0.00059709 73.985 2 2.2518 2.2515 NaN 1 Median 2.2518 2.2515 NaN 1 0 Median NaN NaN NaN 0 0 Median 8894800 3503100 5391700 8894800 3503100 5391700 0 0 0 6312 454 6459 16700;16701 26114;26115 26115 2 IHNAENIQPGEQK RPEEADETWDSKEDKIHNAENIQPGEQKYE DKIHNAENIQPGEQKYEYKSDQWKPLNLEE K I H Q K Y 1 0 2 0 0 2 2 1 1 2 0 1 0 0 1 0 0 0 0 0 0 0 13 0 1476.7321 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 417 429 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 4.069E-141 245.58 4 2.2542 2.3551 14.285 2 Median 2.2542 2.3551 14.285 2 0 Median NaN NaN NaN 0 0 Median 78296000 34173000 44122000 78296000 34173000 44122000 0 0 0 6313 896 6460 16702;16703;16704;16705 26116;26117;26118;26119;26120 26120 5 IHNIDIPTTQQVPHIEALLK EEARLKEAQLRNELKIHNIDIPTTQQVPHI IPTTQQVPHIEALLKRKLSEQEELKKKPRR K I H L K R 1 0 1 1 0 2 1 0 2 4 2 1 0 0 2 0 2 0 0 1 0 0 20 0 2279.2638 A6NHR9;J3KTL8 A6NHR9 1674 1693 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 4 1.1245E-05 50.425 1 2.654 2.1675 NaN 1 Median NaN NaN NaN 0 0 Median 2.654 2.1675 NaN 1 0 Median 8070400 3031500 5038900 0 0 0 8070400 3031500 5038900 6314 684 6461 16706 26121 26121 1 IHNQNNEQAWK KDEDISQKDMYNIIRIHNQNNEQAWKEILK NIIRIHNQNNEQAWKEILKWEALHAAECPC R I H W K E 1 0 3 0 0 2 1 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 11 0 1380.6535 A0A024RBY9;P53701;Q68D50 A0A024RBY9 153 163 HCCS;DKFZp779I1858 Cytochrome c-type heme lyase yes no 2 4.4461E-10 130.98 1 0.60377 0.60374 NaN 1 Median 0.60377 0.60374 NaN 1 0 Median NaN NaN NaN 0 0 Median 7735500 4741700 2993900 7735500 4741700 2993900 0 0 0 6315 350 6462 16707 26122 26122 1 IHPLVR ECSIRLPKAAKTPLKIHPLVRLPLATIVKD PKAAKTPLKIHPLVRLPLATIVKDLVAQAP K I H V R L 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 6 0 733.45989 A0A024R534;O94776 A0A024R534 509 514 MTA2 Metastasis-associated protein MTA2 yes no 2 0.057166 70.49 1 1.808 1.4756 NaN 1 Median NaN NaN NaN 0 0 Median 1.808 1.4756 NaN 1 0 Median 14585000 5286200 9299300 0 0 0 14585000 5286200 9299300 6316 168 6463 16708 26123 26123 1 IHQEGDALPGHSK KSPREHNGKVKKKKKIHQEGDALPGHSKPS KKIHQEGDALPGHSKPSRSMESSPRKGSKK K I H S K P 1 0 0 1 0 1 1 2 2 1 1 1 0 0 1 1 0 0 0 0 0 0 13 0 1387.6844 Q1ED39;H3BPL4 Q1ED39 218 230 KNOP1 Lysine-rich nucleolar protein 1 yes no 3 3.0658E-05 72.681 1 1 1.2787 1.1289 25.635 2 Median 0.94335 0.94171 NaN 1 0 Median 1.7333 1.3532 NaN 1 0 Median 17781000 8606600 9174900 14341000 7376400 6964200 3440800 1230200 2210600 6317 1775 6464 16709;16710 26124;26125;26126 26125 3 IHQETFGK IVILEYQPSKNMFEKIHQETFGKSGCRRIV SKNMFEKIHQETFGKSGCRRIVPGQFLAVD K I H G K S 0 0 0 0 0 1 1 1 1 1 0 1 0 1 0 0 1 0 0 0 0 0 8 0 958.48723 A8K6V3;Q15393;J3QL37 A8K6V3 102 109 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.011407 69.998 1 1.7385 1.8729 NaN 1 Median 1.7385 1.8729 NaN 1 0 Median NaN NaN NaN 0 0 Median 33712000 11798000 21914000 33712000 11798000 21914000 0 0 0 6318 764 6465 16711 26127 26127 1 IHSLPPEGK GLTGSARRLPVPRAKIHSLPPEGKLGIMEL PVPRAKIHSLPPEGKLGIMELAVGLTSCFV K I H G K L 0 0 0 0 0 0 1 1 1 1 1 1 0 0 2 1 0 0 0 0 0 0 9 0 976.53418 Q53XN1;U3KQK5;P10176 Q53XN1 26 34 COX8A Cytochrome c oxidase subunit 8A, mitochondrial yes no 2 0.00096668 91.853 2 0.7232 0.75127 NaN 1 Median 0.7232 0.75127 NaN 1 0 Median NaN NaN NaN 0 0 Median 23856000 12485000 11371000 23856000 12485000 11371000 0 0 0 6319 1464 6466 16712;16713 26128;26129;26130 26130 3 IHTEPQLSAALEYVR TRRLSFLVSYIASKKIHTEPQLSAALEYVR IHTEPQLSAALEYVRSHPLDPIDTVDFERE K I H V R S 2 1 0 0 0 1 2 0 1 1 2 0 0 0 1 1 1 0 1 1 0 0 15 0 1725.905 Q53HS0;P47897;A8K3A8;Q96AW5;A0A1B0GVU9;B4DTH6;A0A0U1RQM8;A0A0U1RQU2;B7Z840;A0A0U1RQT0;A0A0U1RRI9;A0A0U1RQE9;A0A0U1RQL2 Q53HS0 81 95 QARS Glutamine--tRNA ligase yes no 3 0.0038744 47.545 3 2 0.93901 0.8802 10.459 2 Median 0.94475 0.94776 NaN 1 0 Median 0.9333 0.81746 NaN 1 0 Median 22589000 8695300 13894000 18565000 6012100 12552000 4024700 2683200 1341500 6320 1575 6467 16714;16715;16716;16717;16718 26131;26132;26133;26134;26135;26136 26131 5 IHTTMSGYQVLR FLVSMLVVFLVSTRKIHTTMSGYQVLRSVL TRKIHTTMSGYQVLRSVLQFLATTDLTVNG K I H L R S 0 1 0 0 0 1 0 1 1 1 1 0 1 0 0 1 2 0 1 1 0 0 12 0 1404.7184 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 365 376 NOL6 Nucleolar protein 6 yes no 2 0.00024354 70.028 1 1.2994 1.4157 NaN 1 Median 1.2994 1.4157 NaN 1 0 Median NaN NaN NaN 0 0 Median 29295000 9858100 19437000 29295000 9858100 19437000 0 0 0 6321 2038 6468 16719 26137 26137 1878 1 IHVLEAQDLIAK HTTPDSQFGTEHVLRIHVLEAQDLIAKDRF VLRIHVLEAQDLIAKDRFLGGLVKGKSDPY R I H A K D 2 0 0 1 0 1 1 0 1 2 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1348.7715 B3KY56;B3KMV5;A0A024RB17;A0A024RB16;Q9BSJ8 B3KY56 605 616 FAM62A;ESYT1 Extended synaptotagmin-1 yes no 2 0.011808 56.043 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6322 320 6469 16720 26138 26138 1 IHVQGTDLPDPIATFQQLDQEYK NLRKEKINFLRNKHKIHVQGTDLPDPIATF PDPIATFQQLDQEYKINSRLLQNILDAGFQ K I H Y K I 1 0 0 3 0 4 1 1 1 2 2 1 0 1 2 0 2 0 1 1 0 0 23 0 2655.318 Q9Y2R4;Q59H21 Q9Y2R4 149 171 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 3 1.2894E-09 74.251 2 1.0533 0.85318 2.5412 2 Median NaN NaN NaN 0 0 Median 1.0533 0.85318 2.5412 2 0 Median 47689000 23866000 23823000 0 0 0 47689000 23866000 23823000 6323 2126 6470 16721;16722 26139;26140;26141;26142 26141 4 IHVSDQELQSANASVDDSRLEELK QSVQVPEFTPKSGVKIHVSDQELQSANASV SANASVDDSRLEELKATLPSPDKLPGFKMY K I H L K A 2 1 1 3 0 2 3 0 1 1 3 1 0 0 0 4 0 0 0 2 0 0 24 1 2682.3097 A0A024R1A3;P22314;B4DDE4;B4DL67;Q5JRR6;B3KUJ2 A0A024R1A3 807 830 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 4 0.0084377 21.564 2 1.3679 1.1693 NaN 1 Median NaN NaN NaN 0 0 Median 1.3679 1.1693 NaN 1 0 Median 5619400 1171300 4448200 0 0 0 5619400 1171300 4448200 6324 74 6471 16723;16724 26143;26144 26143 2 IIAATIENAQPILQIDNAR DYSPYFKTIEDLRNKIIAATIENAQPILQI TIENAQPILQIDNARLAADDFRTKYEHELA K I I A R L 4 1 2 1 0 2 1 0 0 5 1 0 0 0 1 0 1 0 0 0 0 0 19 0 2063.1375 CON__P08779;P08779;B4DWU0;B4E2J5 CON__P08779 178 196 KRT16 Keratin, type I cytoskeletal 16 yes no 2 3.1681E-17 138.42 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77955000 77955000 0 58151000 58151000 0 19803000 19803000 0 + 6325 1159 6472 16725;16726;16727;16728 26145;26146;26147;26148 26146 4 IIAEGANGPTTPEADK EKQLTKSNAPRVKAKIIAEGANGPTTPEAD IAEGANGPTTPEADKIFLERNIMVIPDLYL K I I D K I 3 0 1 1 0 0 2 2 0 2 0 1 0 0 2 0 2 0 0 0 0 0 16 0 1582.7839 B4E0N9;B4DMG8;B4DMF5;B3KT18;Q53GW3;E9KL48;P00367;Q9BSD0;A0A140VK14;P49448 B4E0N9 332 347 GLUD1;GLUD2 Glutamate dehydrogenase;Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.0012683 52.693 1 1 0.1442 0.11882 NaN 1 Median NaN NaN NaN 0 0 Median 0.1442 0.11882 NaN 1 0 Median 3666400 1540900 2125500 1825100 0 1825100 1841300 1540900 300430 6326 941 6473 16729;16730 26149;26150;26151;26152 26152 4 IIAFVGSPVEDNEK HLALKHRQGKNHKMRIIAFVGSPVEDNEKD RIIAFVGSPVEDNEKDLVKLAKRLKKEKVN R I I E K D 1 0 1 1 0 0 2 1 0 2 0 1 0 1 1 1 0 0 0 2 0 0 14 0 1516.7773 P55036;A6PVX3;Q5VWC4 P55036 109 122 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 2 0.00076801 79.659 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6327 1612 6474 16731;16732 26153;26154 26154 2 IIAIEGPDLVNGSHQK EVFQTIADHTPVAIKIIAIEGPDLVNGSHQ IAIEGPDLVNGSHQKTFEEILPEIIISKEL K I I Q K T 1 0 1 1 0 1 1 2 1 3 1 1 0 0 1 1 0 0 0 1 0 0 16 0 1689.905 A0PJ70;A8K9K0;Q8TF76 A0PJ70 512 527 GSG2 Serine/threonine-protein kinase haspin yes no 3 0.04347 25.978 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 644910 0 644910 0 0 0 644910 0 644910 6328 646 6475 16733 26155 26155 1 IIANALSSEPACLAEIEEDK LAFRDQNILLGTTYRIIANALSSEPACLAE LSSEPACLAEIEEDKARRILELSGSSSEDS R I I D K A 4 0 1 1 1 0 4 0 0 3 2 1 0 0 1 2 0 0 0 0 0 0 20 0 2172.062 P78527 P78527 3336 3355 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.0676E-12 102.5 2 2 0.49633 0.45194 45.222 4 Median 0.65161 0.66081 0.93616 2 0 Median 0.37452 0.30227 4.0941 2 0 Median 97740000 65213000 32527000 51584000 32166000 19418000 46156000 33047000 13109000 6329 1665 6476 16734;16735;16736;16737 26156;26157;26158;26159;26160;26161;26162;26163;26164 26159 9 IIAPPER QKEITALAPSTMKIKIIAPPERKYSVWIGG APSTMKIKIIAPPERKYSVWIGGSVLASLS K I I E R K 1 1 0 0 0 0 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 7 0 794.46504 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q7Z7J6;A6NL76;B4DUI8;Q562R1;B3KPP5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;F1BXA6;A4UCT3;A5GZ75;P63261;B4E3A4;B4DVQ0;V9HVZ7 P63261 329 335 ACTA2;ACTG2;ACTA1;ACTC1;ACTBL2;PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 0.010632 110.61 3 2 1.9423 2.3192 NaN 1 Median 1.9423 2.3192 NaN 1 0 Median NaN NaN NaN 0 0 Median 4453100000 1808900000 2644300000 4405100000 1760800000 2644300000 48035000 48035000 0 6330 1624;1656;1100;2186 6477 16738;16739;16740;16741;16742 26165;26166;26167;26168;26169 26165 5 IIAPPERK QKEITALAPSTMKIKIIAPPERKYSVWIGG PSTMKIKIIAPPERKYSVWIGGSVLASLST K I I R K Y 1 1 0 0 0 0 1 0 0 2 0 1 0 0 2 0 0 0 0 0 0 0 8 1 922.56 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;Q7Z7J6;A6NL76;B4DUI8;Q562R1;B3KPP5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;F1BXA6;A4UCT3;A5GZ75;P63261;B4E3A4;B4DVQ0;V9HVZ7 P63261 329 336 ACTA2;ACTG2;ACTA1;ACTC1;ACTBL2;PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 0.0018488 94.262 3 2 2.3733 2.6734 9.132 5 Median 2.2889 2.7386 4.2028 3 0 Median 2.7463 2.387 5.7618 2 0 Median 3062600000 940110000 2122500000 2959400000 912910000 2046500000 103180000 27195000 75981000 6331 1624;1656;1100;2186 6478 16743;16744;16745;16746;16747 26170;26171;26172;26173;26174;26175;26176;26177 26171 8 IIATVLMTEDIK GPRRSQQGPRKEPRKIIATVLMTEDIKLNK PRKIIATVLMTEDIKLNKAEKAWKPSSKRT K I I I K L 1 0 0 1 0 0 1 0 0 3 1 1 1 0 0 0 2 0 0 1 0 0 12 0 1345.7527 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 552 563 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.00043857 64.064 1 2.2959 2.4829 NaN 1 Median 2.2959 2.4829 NaN 1 0 Median NaN NaN NaN 0 0 Median 21980000 6791400 15189000 21980000 6791400 15189000 0 0 0 6332 896 6479 16748 26178;26179 26179 703 2 IICHSYLER RLAKKTAEEPAASGRIICHSYLERLLNVEV PAASGRIICHSYLERLLNVEVPQKVGSEQK R I I E R L 0 1 0 0 1 0 1 0 1 2 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1189.5914 Q9NQS7;B3KPD3 Q9NQS7 353 361 INCENP Inner centromere protein yes no 2;3 0.0018366 80.219 4 2 1.2496 1.2902 19.536 5 Median 1.0651 1.0845 11.428 3 0 Median 1.8908 1.561 5.9166 2 0 Median 105280000 54967000 50317000 87787000 49033000 38754000 17496000 5933300 11563000 6333 2059 6480 16749;16750;16751;16752;16753;16754 26180;26181;26182;26183;26184;26185;26186 26183 7 IIDAALR GINTLVTYDMVPEPKIIDAALRACRRLNDF YDMVPEPKIIDAALRACRRLNDFASTVRIL K I I L R A 2 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 770.46504 H3BNX8;P20674;H3BRM5;H3BV69 H3BNX8 88 94 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 2 0.032066 66.138 1 1.1225 1.2937 NaN 1 Median 1.1225 1.2937 NaN 1 0 Median NaN NaN NaN 0 0 Median 54496000 27133000 27362000 54496000 27133000 27362000 0 0 0 6334 1301 6481 16755 26187;26188 26188 2 IIDEDGLLNLIR SGQSKSDKAAALGTKIIDEDGLLNLIRTMP GTKIIDEDGLLNLIRTMPGKKSKYEIAVET K I I I R T 0 1 1 2 0 0 1 1 0 3 3 0 0 0 0 0 0 0 0 0 0 0 12 0 1382.7769 P35251;Q14756;H0Y8U4 P35251 469 480 RFC1;LLDBP Replication factor C subunit 1 yes no 2 5.4154E-20 136.63 2 1 0.56395 0.46607 NaN 1 Median NaN NaN NaN 0 0 Median 0.56395 0.46607 NaN 1 0 Median 41983000 36283000 5700800 27336000 27336000 0 14647000 8946200 5700800 6335 1542 6482 16756;16757;16758 26189;26190;26191;26192 26190 4 IIDETMAQLQDLK NEIEKLKKEEQRHMKIIDETMAQLQDLKNQ MKIIDETMAQLQDLKNQHLAKKSEVNDKNH K I I L K N 1 0 0 2 0 2 1 0 0 2 2 1 1 0 0 0 1 0 0 0 0 0 13 0 1516.7807 Q14683;G8JLG1 Q14683 862 874 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00013615 84.658 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4843700 0 4843700 4843700 0 4843700 0 0 0 6336 1739 6483 16759 26193 26193 1571 1 IIDEVVNK IRNPQQQESLKLATRIIDEVVNKFLDDLGN SLKLATRIIDEVVNKFLDDLGNAKSHLMSL R I I N K F 0 0 1 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 928.52295 B3KN59;B3KM36;O95816 B3KN59 116 123 BAG2 BAG family molecular chaperone regulator 2 yes no 2 0.017078 60.682 2 1.1915 1.3337 5.0363 2 Median 1.1915 1.3337 5.0363 2 0 Median NaN NaN NaN 0 0 Median 148070000 66769000 81300000 148070000 66769000 81300000 0 0 0 6337 900 6484 16760;16761 26194;26195;26196 26195 3 IIDINYYPVPEACLSNK KLAEVTKVVVRNLNKIIDINYYPVPEACLS DINYYPVPEACLSNKRHRPIGIGVQGLADA K I I N K R 1 0 2 1 1 0 1 0 0 3 1 1 0 0 2 1 0 0 2 1 0 0 17 0 2007.9976 B4DNN4;Q53GZ5;P23921;B4E0I8;B4DS95;B4DXD1;E9PL69;B4DXB0 B4DNN4 450 466 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.0018482 55.452 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4573600 0 4573600 4573600 0 4573600 0 0 0 6338 1014 6485 16762 26197 26197 1 IIDISDVFR ATYGTDKPDTRFEMKIIDISDVFRNTEIGF TRFEMKIIDISDVFRNTEIGFLQDALSKPH K I I F R N 0 1 0 2 0 0 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 9 0 1076.5866 A8K4A8;A0A024R8Z9;Q6PI48;Q9H9J7;Q9NVT8 A8K4A8 341 349 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.0043738 69.423 2 1.6647 1.6875 1.1008 2 Median 1.6647 1.6875 1.1008 2 0 Median NaN NaN NaN 0 0 Median 13313000 5085600 8227200 13313000 5085600 8227200 0 0 0 6339 266 6486 16763;16764 26198;26199 26198 2 IIDVVYNASNNELVR GNFSWGSECCTRKTRIIDVVYNASNNELVR IIDVVYNASNNELVRTKTLVKNCIVLIDST R I I V R T 1 1 3 1 0 0 1 0 0 2 1 0 0 0 0 1 0 0 1 3 0 0 15 0 1717.8999 Q5JR94;P62241;Q5JR95 Q5JR94 78 92 RPS8 40S ribosomal protein S8 yes no 2 2.5819E-38 164.13 2 6 0.82404 0.82132 52.307 6 Median 0.74055 0.87716 0.44912 2 0 Median 0.88062 0.76891 66.633 4 0 Median 3391800000 1895000000 1496800000 2477200000 1416000000 1061200000 914620000 479030000 435590000 6340 1635 6487 16765;16766;16767;16768;16769;16770;16771;16772 26200;26201;26202;26203;26204;26205;26206;26207;26208;26209;26210;26211;26212;26213;26214;26215;26216;26217;26218;26219;26220;26221;26222 26201 22 IIDYSQMDELALLSLR FNPEAFKPGNTHKCRIIDYSQMDELALLSL IDYSQMDELALLSLRTSIIEAQYLRYHDIE R I I L R T 1 1 0 2 0 1 1 0 0 2 4 0 1 0 0 2 0 0 1 0 0 0 16 0 1878.9761 Q14690;B4DH82;B4DES7 Q14690 421 436 PDCD11 Protein RRP5 homolog yes no 2 5.3397E-09 100.22 4 1.1191 1.1559 15.378 2 Median 1.1191 1.1559 15.378 2 0 Median NaN NaN NaN 0 0 Median 33805000 11849000 21956000 33805000 11849000 21956000 0 0 0 6341 1741 6488;6489 16773;16774;16775;16776 26223;26224;26225;26226;26227 26223 1582 5 IIEDQQESLNK WEVLEGEVEKEALKKIIEDQQESLNKWKSK ALKKIIEDQQESLNKWKSKGRRFKGKGKGN K I I N K W 0 0 1 1 0 2 2 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1315.662 B5BUB5;P05455;Q14730;Q9UMH5 B5BUB5 318 328 SSB Lupus La protein yes no 2 0.00030701 85.377 2 1.5101 1.5301 NaN 1 Median 1.5101 1.5301 NaN 1 0 Median NaN NaN NaN 0 0 Median 12961000 4769800 8191600 12961000 4769800 8191600 0 0 0 6342 1077 6490 16777;16778 26228;26229 26228 2 IIEENIPELLSLNLSNNR DVVLNRRSCMAATLRIIEENIPELLSLNLS ENIPELLSLNLSNNRLYRLDDMSSIVQKAP R I I N R L 0 1 4 0 0 0 3 0 0 3 4 0 0 0 1 2 0 0 0 0 0 0 18 0 2080.1164 Q9UBU9;E9PIN3;B4E3J0;B4E227;Q59E96 Q9UBU9 259 276 NXF1 Nuclear RNA export factor 1 yes no 2 0.006309 43.382 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2588700 0 2588700 2588700 0 2588700 0 0 0 6343 2099 6491 16779 26230 26230 1 IIEPIQSR SKTTRFALACNASDKIIEPIQSRCAVLRYT ACNASDKIIEPIQSRCAVLRYTKLTDAQIL K I I S R C 0 1 0 0 0 1 1 0 0 3 0 0 0 0 1 1 0 0 0 0 0 0 8 0 954.54983 Q75MT5;B5BUD2;P35250;A0A087WVY3;H7C5P4 Q75MT5 143 150 RFC2 Replication factor C subunit 2 yes no 2 0.013893 64.265 2 1.2156 1.2599 24.702 2 Median 1.2156 1.2599 24.702 2 0 Median NaN NaN NaN 0 0 Median 42551000 19613000 22938000 42551000 19613000 22938000 0 0 0 6344 1079 6492 16780;16781 26231;26232;26233;26234 26232 4 IIEPLTSR SKTTRFCLICNYVSRIIEPLTSRCSKFRFK ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ R I I S R C 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 8 0 927.53893 P35249;C9J8M3;C9JZI1 P35249 186 193 RFC4 Replication factor C subunit 4 yes no 2 0.02717 64.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6345 1541 6493 16782 26235 26235 1 IIETPGIR FFAFLQTGNYKEAKKIIETPGIRARSARLQ NYKEAKKIIETPGIRARSARLQWFCDRCVA K I I I R A 0 1 0 0 0 0 1 1 0 3 0 0 0 0 1 0 1 0 0 0 0 0 8 0 897.52837 E5KNY5;P42704;B4DSR0 E5KNY5 910 917 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0090383 79.116 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34054000 0 34054000 34054000 0 34054000 0 0 0 6346 1207 6494 16783 26236 26236 1 IIFVDEVFK YANVVLGDDSLNDCRIIFVDEVFKIERPGE SLNDCRIIFVDEVFKIERPGEGSPMVDNPM R I I F K I 0 0 0 1 0 0 1 0 0 2 0 1 0 2 0 0 0 0 0 2 0 0 9 0 1108.6168 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 284 292 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.0091583 60.436 2 2 0.70271 0.63243 7.641 4 Median 0.58569 0.59392 2.402 2 0 Median 0.8517 0.67463 2.6529 2 0 Median 32984000 19983000 13001000 26799000 16490000 10308000 6185100 3493000 2692100 6347 406 6495 16784;16785;16786;16787 26237;26238;26239;26240;26241;26242 26237 6 IIFVVGGPGSGK ______________________________ KTKIIFVVGGPGSGKGTQCEKIVQKYGYTH K I I G K G 0 0 0 0 0 0 0 4 0 2 0 1 0 1 1 1 0 0 0 2 0 0 12 0 1129.6495 Q6FGX9;Q53EY8;Q5T9B7;P00568 Q6FGX9 10 21 AK1 Adenylate kinase isoenzyme 1 yes no 2 0.0014978 77.379 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10772000 0 10772000 10772000 0 10772000 0 0 0 6348 1436 6496 16788;16789;16790 26243;26244;26245 26243 3 IIGATDSCGDLMFLMK NDIARGFERGLEPEKIIGATDSCGDLMFLM IGATDSCGDLMFLMKWKDTDEADLVLAKEA K I I M K W 1 0 0 2 1 0 0 2 0 2 2 1 2 1 0 1 1 0 0 0 0 0 16 0 1770.8354 V9HWG0;P45973;Q6I9T7 V9HWG0 126 141 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 6.9808E-12 113.61 1 1 0.61582 0.59 99.691 2 Median 1.059 1.194 NaN 1 0 Median 0.35809 0.29155 NaN 1 0 Median 74388000 41035000 33353000 61447000 31231000 30216000 12941000 9804400 3136400 6349 1568 6497 16791;16792 26246;26247;26248;26249 26247 1324;1325 4 IIGATDSSGELMFLMK ADKPRGFARGLDPERIIGATDSSGELMFLM IGATDSSGELMFLMKWKDSDEADLVLAKEA R I I M K W 1 0 0 1 0 0 1 2 0 2 2 1 2 1 0 2 1 0 0 0 0 0 16 0 1711.8525 B5MD17;J3KS05;Q6IBN6;P83916;K7ELA4;A4D177;Q13185 A4D177 126 141 CBX1;CBX3 Chromobox protein homolog 1;Chromobox protein homolog 3 no no 2 4.4859E-12 117.79 2 4 1.2108 0.97536 76.913 6 Median 1.7809 2.0645 4.605 2 0 Median 0.755 0.60636 55.821 4 0 Median 577350000 226230000 351110000 513750000 185390000 328370000 63590000 40844000 22746000 6350 662;1081 6498;6499 16793;16794;16795;16796;16797;16798 26250;26251;26252;26253;26254;26255;26256;26257;26258;26259;26260;26261;26262 26256 516;517 13 IIGAVDQIQLTQAQLEER SDQVNGVLVLSLLDKIIGAVDQIQLTQAQL AVDQIQLTQAQLEERQAEMEGAVQSIQGEL K I I E R Q 2 1 0 1 0 4 2 1 0 3 2 0 0 0 0 0 1 0 0 1 0 0 18 0 2024.0902 B4DPZ5;B4DNU9;Q6NZI2 B4DPZ5 61 78 PTRF Polymerase I and transcript release factor yes no 2 4.4274E-51 172.57 2 2 0.91601 0.90004 18.268 4 Median 0.92609 1.0488 4.8835 2 0 Median 0.90808 0.77058 5.2157 2 0 Median 170570000 87808000 82761000 126020000 64905000 61120000 44544000 22903000 21642000 6351 1017 6500 16799;16800;16801;16802 26263;26264;26265;26266;26267;26268;26269;26270 26266 8 IIGDASTQTDALK SNSVLQGAVPTVTAKIIGDASTQTDALKLP AKIIGDASTQTDALKLPPSQPPRLLKNKAL K I I L K L 2 0 0 2 0 1 0 1 0 2 1 1 0 0 0 1 2 0 0 0 0 0 13 0 1331.6933 Q5VZL5;H7C1I7 Q5VZL5 919 931 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.0041613 62.466 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5688000 0 5688000 5688000 0 5688000 0 0 0 6352 1835 6501 16803 26271 26271 1 IIGLDQVAGMSETALPGAFK SSDKFVSELWKDVDRIIGLDQVAGMSETAL QVAGMSETALPGAFKTRKGMFRTVGQLYKE R I I F K T 3 0 0 1 0 1 1 3 0 2 2 1 1 1 1 1 1 0 0 1 0 0 20 0 2017.0554 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 618 637 MYH9 Myosin-9 yes no 2 3.811E-09 89.911 2 2 2.1998 2.0944 14.265 4 Median 2.1105 2.383 1.8548 2 0 Median 2.2961 1.8626 0.18416 2 0 Median 290410000 89058000 201360000 241720000 74288000 167430000 48695000 14770000 33925000 6353 81 6502 16804;16805;16806;16807 26272;26273;26274;26275;26276;26277;26278;26279;26280 26279 58 9 IIHDFPQFYPLGIVQHD DSHPFDLGLYNEAVKIIHDFPQFYPLGIVQ HDFPQFYPLGIVQHD_______________ K I I H D - 0 0 0 2 0 2 0 1 2 3 1 0 0 2 2 0 0 0 1 1 0 0 17 0 2038.0312 B5MC59;A4D105;P35244 B5MC59 66 82 RPA3 Replication protein A 14 kDa subunit yes no 3 0.0004985 56.817 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20816000 0 0 12508000 0 0 8307800 0 0 6354 661 6503 16808;16809;16810 26281;26282;26283 26282 3 IIIEDLLEATR CQAVILSVEDDTGHRIIIEDLLEATRSPEV TGHRIIIEDLLEATRSPEVGMRQAAAIILN R I I T R S 1 1 0 1 0 0 2 0 0 3 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1284.7289 E1NZA1;A0A024RBS1 E1NZA1 2151 2161 PRIC295;GCN1L1 yes no 2 3.1396E-05 100.48 2 1 1.5907 1.6028 28.963 3 Median 1.6122 1.617 1.2527 2 0 Median 1.11 0.9794 NaN 1 0 Median 37728000 14953000 22775000 36113000 14114000 21999000 1614800 838410 776390 6355 1205 6504 16811;16812;16813 26284;26285;26286;26287 26286 4 IIIEELSLVAASPTLSPR EQRLNEVPKNHPKSRIIIEELSLVAASPTL EELSLVAASPTLSPRQSMISTQNQYSTLSK R I I P R Q 2 1 0 0 0 0 2 0 0 3 3 0 0 0 2 3 1 0 0 1 0 0 18 0 1908.0932 Q16513;B1AL79;H0Y5V5;Q9UHS4 Q16513 291 308 PKN2 Serine/threonine-protein kinase N2 yes no 2 0.0045998 50.562 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6356 1769 6505 16814 26288 26288 1 IIIENKPK LNNQARFILEKIDGKIIIENKPKKELIKVL LEKIDGKIIIENKPKKELIKVLIQRGYDSD K I I P K K 0 0 1 0 0 0 1 0 0 3 0 2 0 0 1 0 0 0 0 0 0 0 8 1 953.59097 P11388 P11388 1063 1070 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 0.0038975 107.43 4 4 1.1278 1.0916 15.695 8 Median 0.73476 0.86304 16.262 4 0 Median 1.3292 1.1348 4.4662 4 0 Median 3820400000 2067600000 1752800000 3390300000 1888200000 1502100000 430110000 179400000 250720000 6357 1471 6506 16815;16816;16817;16818;16819;16820;16821;16822 26289;26290;26291;26292;26293;26294;26295;26296;26297;26298;26299 26294 11 IIIPEIQK FDGIQPKMFGMVLEKIIIPEIQKVSGNVEK FGMVLEKIIIPEIQKVSGNVEKKICAVGIT K I I Q K V 0 0 0 0 0 1 1 0 0 4 0 1 0 0 1 0 0 0 0 0 0 0 8 0 952.59572 B4DUC5;P55060;B4DPS6;B4DM31;B4DS32 B4DUC5 608 615 CSE1L Exportin-2 yes no 2 0.0078194 81.297 21 9 9.1302 0.95675 29.791 18 Plateau 0.83844 1.0069 29.287 12 0 Plateau 0.81459 0.65904 1.8755 6 0 Median 5641400000 4931400000 710060000 1251900000 555660000 696220000 4389600000 4375700000 13840000 6358 1037 6507 16823;16824;16825;16826;16827;16828;16829;16830;16831;16832;16833;16834;16835;16836;16837;16838;16839;16840;16841;16842;16843;16844;16845;16846;16847;16848;16849;16850;16851;16852 26300;26301;26302;26303;26304;26305;26306;26307;26308;26309;26310;26311;26312;26313;26314;26315;26316;26317;26318;26319;26320;26321;26322;26323;26324;26325;26326;26327;26328;26329;26330;26331;26332;26333;26334;26335;26336;26337;26338;26339;26340;26341;26342;26343;26344;26345;26346;26347;26348;26349;26350;26351;26352;26353;26354;26355;26356;26357;26358 26301 59 IIITVVEEQEQK RQFRTGRITVEKIIKIIITVVEEQEQKGRL IIKIIITVVEEQEQKGRLCFEGLRSLVPAA K I I Q K G 0 0 0 0 0 2 3 0 0 3 0 1 0 0 0 0 1 0 0 2 0 0 12 0 1427.7872 Q15149;D3DWL0 Q15149 3095 3106 PLEC;PLEC1 Plectin yes no 2 2.9713E-08 109.79 2 2 2.3598 1.9046 8.9245 2 Median NaN NaN NaN 0 0 Median 2.3598 1.9046 8.9245 2 0 Median 24798000 16258000 8540100 12764000 12764000 0 12034000 3494100 8540100 6359 1754 6508 16853;16854;16855;16856 26359;26360;26361;26362;26363;26364 26360 6 IILDEAHNVK VEGTSTPLLRIAWARIILDEAHNVKNPRVQ IAWARIILDEAHNVKNPRVQTSIAVCKLQA R I I V K N 1 0 1 1 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1150.6346 A0A024R0F1;Q9UNY4;Q59EG6 A0A024R0F1 734 743 TTF2 Transcription termination factor 2 yes no 3 0.0017886 59.645 2 0.80797 0.87039 0.83768 2 Median 0.80797 0.87039 0.83768 2 0 Median NaN NaN NaN 0 0 Median 75802000 44418000 31384000 75802000 44418000 31384000 0 0 0 6360 44 6509 16857;16858 26365;26366;26367;26368 26365 4 IILDLISESPIK VLIGGKPDRVVECIKIILDLISESPIKGRA CIKIILDLISESPIKGRAQPYDPNFYDETY K I I I K G 0 0 0 1 0 0 1 0 0 4 2 1 0 0 1 2 0 0 0 0 0 0 12 0 1339.7963 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2 B4DUQ1 184 195 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 7.8154E-13 132.78 2 2 1.4269 1.3384 44.592 4 Median 1.6813 1.9002 0.39403 2 0 Median 1.1041 0.88306 9.6437 2 0 Median 267230000 104250000 162990000 242500000 92453000 150050000 24736000 11796000 12940000 6361 102 6510 16859;16860;16861;16862 26369;26370;26371;26372;26373;26374;26375;26376;26377;26378;26379;26380 26379 12 IILEAEK SSAKENQTAVDVFRRIILEAEKMDGAASQG TAVDVFRRIILEAEKMDGAASQGKSSCSVM R I I E K M 1 0 0 0 0 0 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 7 0 814.48002 C9J931;Q6NZ61;A8K005;A0A090N900;Q15382 C9J931 58 64 RHEB GTP-binding protein Rheb yes no 2 0.032753 81.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15070000 0 15070000 15070000 0 15070000 0 0 0 6362 459 6511 16863 26381 26381 1 IILLAEGR IKPQVDRYRLKNGRRIILLAEGRLVNLGCA RLKNGRRIILLAEGRLVNLGCAMGHPSFVM R I I G R L 1 1 0 0 0 0 1 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 8 0 883.5491 P23526;Q1RMG2 P23526 336 343 AHCY Adenosylhomocysteinase yes no 2 0.01993 58.815 2 0.76385 0.86261 8.1581 2 Median 0.76385 0.86261 8.1581 2 0 Median NaN NaN NaN 0 0 Median 218020000 123140000 94883000 218020000 123140000 94883000 0 0 0 6363 1512 6512 16864;16865 26382;26383;26384 26383 3 IILLFDAHK DFCQVLQWFAERVDRIILLFDAHKLDISDE AERVDRIILLFDAHKLDISDEFSEAIKAFR R I I H K L 1 0 0 1 0 0 0 0 1 2 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1068.6332 B2R5U3;A0A024R571;Q9H4M9;C9JC03;B4DZH9;B4DMV9;B4DR44;B4DTR4;Q9NZN3;C9JDQ8;C9J2Z4;A8K9B9;A0A024R9N6;Q9H223 A8K9B9 188 196 EHD1;EHD3;EHD4 EH domain-containing protein 1;EH domain-containing protein 3;EH domain-containing protein 4 no no 3 0.045504 31.494 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5636000 0 5636000 5636000 0 5636000 0 0 0 6364 284;172 6513 16866 26385 26385 1 IILPPEK FMPVMFSLTWDMACRIILPPEKELAMPGED LTWDMACRIILPPEKELAMPGEDLKFNLIL R I I E K E 0 0 0 0 0 0 1 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 7 0 808.50584 P49411 P49411 389 395 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.032931 64.757 2 1.8902 2.1163 2.1096 2 Median 1.8902 2.1163 2.1096 2 0 Median NaN NaN NaN 0 0 Median 140690000 48892000 91795000 140690000 48892000 91795000 0 0 0 6365 1580 6514 16867;16868 26386;26387 26386 2 IILSDEGK FQEALAIYPPCGRRKIILSDEGKMYGRNEL PPCGRRKIILSDEGKMYGRNELIARYIKLR K I I G K M 0 0 0 1 0 0 1 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 8 0 873.48075 H0YE88;P28347;H0YEJ9;H0YGS2;A0A0A0MRF3;Q96G15;Q53GI4;Q71U35;A0A024QZE2;A0A024QZD8;Q15561;Q99594;Q15562;H0Y7B0;H0YCZ6 H0YE88 58 65 TEAD1;TEAD4;TEAD3;TEAD2 Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4 yes no 2 0.014196 63.565 1 1 0.85198 0.77374 12.019 2 Median 0.70176 0.7107 NaN 1 0 Median 1.0343 0.84238 NaN 1 0 Median 33786000 17343000 16443000 29205000 15026000 14178000 4581100 2316500 2264600 6366 1291 6515 16869;16870 26388;26389;26390 26389 3 IIMYDQNHLLGR DLITQATLLYTMADKIIMYDQNHLLGRACF ADKIIMYDQNHLLGRACFCLLEGDKMDQAD K I I G R A 0 1 1 1 0 1 0 1 1 2 2 0 1 0 0 0 0 0 1 0 0 0 12 0 1471.7606 A8K6X9;Q6PD62;H0YCE8 A8K6X9 123 134 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 4.6688E-05 75.566 1 2.3944 2.3998 NaN 1 Median 2.3944 2.3998 NaN 1 0 Median NaN NaN NaN 0 0 Median 18198000 6625100 11573000 18198000 6625100 11573000 0 0 0 6367 765 6516 16871 26391 26391 592 1 IINDLLQSLR AHIMGPPDRCEHAARIINDLLQSLRSGPPG EHAARIINDLLQSLRSGPPGPPGGPGMPPG R I I L R S 0 1 1 1 0 1 0 0 0 2 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1183.6925 A0A087WTP3;Q92945 A0A087WTP3 385 394 KHSRP Far upstream element-binding protein 2 yes no 2 1.5031E-06 111.61 2 1.7255 1.7378 19.228 2 Median 1.7255 1.7378 19.228 2 0 Median NaN NaN NaN 0 0 Median 17718000 8048200 9669300 17718000 8048200 9669300 0 0 0 6368 403 6517 16872;16873 26392;26393;26394 26394 3 IINDNATYCR RVREWYGYHFPELVKIINDNATYCRLAQFI PELVKIINDNATYCRLAQFIGNRRELNEDK K I I C R L 1 1 2 1 1 0 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 0 10 0 1238.5714 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 203 212 NOP56 Nucleolar protein 56 yes no 2 5.3605E-65 215.38 2 2 0.85045 0.84341 4.3634 4 Median 0.74188 0.86222 5.7039 2 0 Median 0.96267 0.83583 3.8626 2 0 Median 622550000 365760000 256790000 461230000 283380000 177850000 161320000 82380000 78939000 6369 785 6518 16874;16875;16876;16877 26395;26396;26397;26398;26399;26400;26401;26402;26403 26401 9 IINEPTAAAIAYGLDK ATKDAGTIAGLNVLRIINEPTAAAIAYGLD INEPTAAAIAYGLDKKVGAERNVLIFDLGG R I I D K K 4 0 1 1 0 0 1 1 0 3 1 1 0 0 1 0 1 0 1 0 0 0 16 0 1658.8879 V9HWB4;P11021;B4DEF7;E9PN89;V9HW22;P11142;E9PKE3;Q53HF2;Q96IS6;B3KTV0;B4E1Q1;E9PLF4;B4DTX2;A0A024R6B5;P54652;E9PI65 V9HW22 172 187 HEL-S-89n;HSPA5;HSPA8;HEL-S-72p;HSPA2 78 kDa glucose-regulated protein;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2 5.1587E-26 150.21 3 2 1.2699 1.1818 14.926 5 Median 1.2669 1.4889 12.92 3 0 Plateau 1.2901 1.1057 0.4996 2 0 Median 780590000 345480000 435110000 589610000 264130000 325490000 190980000 81353000 109630000 6370 1467;1466;1248 6519 16878;16879;16880;16881;16882 26404;26405;26406;26407;26408;26409;26410;26411;26412 26407 9 IINEPTAAAIAYGLDR ATKDAGVIAGLNVLRIINEPTAAAIAYGLD INEPTAAAIAYGLDRTGKGERNVLIFDLGG R I I D R T 4 1 1 1 0 0 1 1 0 3 1 0 0 0 1 0 1 0 1 0 0 0 16 0 1686.8941 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;Q9UQC1;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5 A8K5I0 172 187 HEL-S-103;HSPA1B;HSPA1A;HSP70-1;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 no no 2 1.8989E-25 149.26 2 2 0.92328 0.91989 3.8893 4 Median 0.78098 0.90067 1.7519 2 0 Median 1.0984 0.95133 3.5177 2 0 Median 486440000 267400000 219030000 394700000 223870000 170830000 91743000 43538000 48205000 6371 533;845 6520 16883;16884;16885;16886 26413;26414;26415;26416;26417;26418;26419;26420;26421;26422 26422 10 IINYANSSDPTSGVSK IGESTVRDIKKNKERIINYANSSDPTSGVS INYANSSDPTSGVSKRKSMKSSTYEELDRV R I I S K R 1 0 2 1 0 0 0 1 0 2 0 1 0 0 1 4 1 0 1 1 0 0 16 0 1651.8053 V9HWD1;B3KNK0;Q4W5G0 V9HWD1 52 67 HEL106;TIGD2 Tigger transposable element-derived protein 2 yes no 2 0.010855 47.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 879180 0 879180 0 0 0 879180 0 879180 6372 914 6521 16887 26423 26423 1 IIPEITAMK KLQLEETMPSPYGRRIIPEITAMKADASKK SPYGRRIIPEITAMKADASKKLLKKKKGDL R I I M K A 1 0 0 0 0 0 1 0 0 3 0 1 1 0 1 0 1 0 0 0 0 0 9 0 1014.5784 Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1214 1222 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.0085458 52.786 2 0.94438 0.99607 1.1222 2 Median 0.94438 0.99607 1.1222 2 0 Median NaN NaN NaN 0 0 Median 66684000 33003000 33681000 66684000 33003000 33681000 0 0 0 6373 1679 6522 16888;16889 26424;26425;26426 26424 1485 3 IIPGFMCQGGDFTR TGEKGFGYKGSCFHRIIPGFMCQGGDFTRH RIIPGFMCQGGDFTRHNGTGGKSIYGEKFE R I I T R H 0 1 0 1 1 1 0 3 0 2 0 0 1 2 1 0 1 0 0 0 0 0 14 0 1597.7381 V9HWF5;A8K486;P62937;B4DM82;B2RE56;F8WE65;C9J5S7;Q71V99;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284 V9HWF5 56 69 HEL-S-69p;PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D yes no 2 0.00070671 66.262 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25904000 0 25904000 25904000 0 25904000 0 0 0 6374 731 6523 16890;16891 26427;26428 26427 566 2 IIPKPEFPR TEAGERVRVSTRSGRIIPKPEFPRADGIVP STRSGRIIPKPEFPRADGIVPETWIDG___ R I I P R A 0 1 0 0 0 0 1 0 0 2 0 1 0 1 3 0 0 0 0 0 0 0 9 1 1095.6441 X6RJ73;Q96A35 X6RJ73 153 161 MRPL24 39S ribosomal protein L24, mitochondrial yes no 3 0.0058969 57.859 1 1.1349 1.2882 NaN 1 Median 1.1349 1.2882 NaN 1 0 Median NaN NaN NaN 0 0 Median 17634000 8456600 9177700 17634000 8456600 9177700 0 0 0 6375 1957 6524 16892 26429;26430 26430 2 IIPLYSTLPPQQQQR KREVDDLGPEVGDIKIIPLYSTLPPQQQQR IIPLYSTLPPQQQQRIFEPPPPKKQNGAIG K I I Q R I 0 1 0 0 0 4 0 0 0 2 2 0 0 0 3 1 1 0 1 0 0 0 15 0 1780.9836 O43143;B4E0S6 O43143 385 399 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 3.8867E-06 97.597 3 2 1.1696 1.1279 11.92 4 Median 1.1198 1.2427 1.6871 2 0 Median 1.1969 1.0139 3.0564 2 0 Median 118170000 54819000 63354000 104400000 48168000 56229000 13775000 6650200 7124900 6376 1379 6525 16893;16894;16895;16896;16897 26431;26432;26433;26434;26435;26436;26437;26438;26439;26440;26441;26442;26443;26444;26445 26436 15 IIPQCIAR PNSHVYYRRGLALKKIIPQCIARDFTDLIV RGLALKKIIPQCIARDFTDLIVINEDRKTP K I I A R D 1 1 0 0 1 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 8 0 969.54297 Q9H9Y2 Q9H9Y2 183 190 RPF1 Ribosome production factor 1 yes yes 2 0.025086 55.441 1 0.98284 1.0095 NaN 1 Median 0.98284 1.0095 NaN 1 0 Median NaN NaN NaN 0 0 Median 19436000 9639000 9797500 19436000 9639000 9797500 0 0 0 6377 2048 6526 16898 26446 26446 1 IIQAAINSDGGQPEIK GNYTSVLEFSDDIVKIIQAAINSDGGQPEI IQAAINSDGGQPEIKKANSMVKSFFIRQME K I I I K K 2 0 1 1 0 2 1 2 0 4 0 1 0 0 1 1 0 0 0 0 0 0 16 0 1652.8733 Q03164 Q03164 1733 1748 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 1.7553E-24 138.45 2 2 1.8838 1.4876 31.405 3 Median 0.88034 0.9069 NaN 1 0 Median 1.9316 1.5541 6.185 2 0 Median 39173000 22047000 17125000 28092000 18078000 10013000 11081000 3968900 7112000 6378 1680 6527 16899;16900;16901;16902 26447;26448;26449;26450;26451;26452 26448 6 IIQEVEENPDLR MGPKRRQLTFREKSRIIQEVEENPDLRKGE KSRIIQEVEENPDLRKGEIARRFNIPPSTL R I I L R K 0 1 1 1 0 1 3 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1453.7413 P07199;Q71VN4 P07199 16 27 CENPB Major centromere autoantigen B yes no 2 7.1376E-13 133.23 2 2 1.3186 1.232 19.785 4 Median 0.96594 1.0314 1.9923 2 0 Median 1.7397 1.4521 0.095816 2 0 Median 88766000 40618000 48148000 72516000 34297000 38219000 16251000 6321700 9929000 6379 1450 6528 16903;16904;16905;16906 26453;26454;26455;26456;26457;26458;26459;26460;26461 26453 9 IIQEVEENPDLRK MGPKRRQLTFREKSRIIQEVEENPDLRKGE SRIIQEVEENPDLRKGEIARRFNIPPSTLS R I I R K G 0 1 1 1 0 1 3 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 13 1 1581.8362 P07199;Q71VN4 P07199 16 28 CENPB Major centromere autoantigen B yes no 2;3 0.00082854 61.344 4 2 1.4249 1.413 6.6005 4 Median 1.1239 1.331 2.9138 2 0 Median 1.7856 1.485 1.4954 2 0 Median 133840000 66367000 67476000 123600000 62460000 61139000 10244000 3907100 6337300 6380 1450 6529 16907;16908;16909;16910;16911;16912 26462;26463;26464;26465;26466;26467;26468;26469;26470 26467 9 IIQLAVINFLAK KTDLKRHQEREKAARIIQLAVINFLAKQRL AARIIQLAVINFLAKQRLRKRVNAALVIQK R I I A K Q 2 0 1 0 0 1 0 0 0 3 2 1 0 1 0 0 0 0 0 1 0 0 12 0 1341.8384 Q8IZT6;B3KM85;Q5VYL4 Q8IZT6 1298 1309 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 2.083E-13 136.57 3 0.96042 0.95663 NaN 1 Median 0.96042 0.95663 NaN 1 0 Median NaN NaN NaN 0 0 Median 8702000 5311000 3391100 8702000 5311000 3391100 0 0 0 6381 1902 6530 16913;16914;16915 26471;26472;26473;26474 26473 4 IIQLLDDYPK PREDRATWKSNYFLKIIQLLDDYPKCFIVG NYFLKIIQLLDDYPKCFIVGADNVGSKQMQ K I I P K C 0 0 0 2 0 1 0 0 0 2 2 1 0 0 1 0 0 0 1 0 0 0 10 0 1216.6703 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;G3V210;F8VZS0;B4E3D5;Q8NHW5;F8VQY6;F8VRK7;F8VS58 Q53HW2 17 26 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 4.6591E-08 116.52 2 2 0.94508 0.92065 24.754 4 Median 0.9789 1.1383 2.5763 2 0 Median 0.90057 0.74274 2.93 2 0 Median 649760000 315110000 334650000 577850000 277610000 300240000 71904000 37496000 34408000 6382 345 6531 16916;16917;16918;16919 26475;26476;26477;26478;26479;26480;26481 26478 7 IIQQGLIR APRASVPSVQIQGQRIIQQGLIRVANVPNT VQIQGQRIIQQGLIRVANVPNTSLLVNIPQ R I I I R V 0 1 0 0 0 2 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 0 8 0 939.58655 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 286 293 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.029371 52.636 2 2.1258 1.8135 2.2681 2 Median NaN NaN NaN 0 0 Median 2.1258 1.8135 2.2681 2 0 Median 5719700 1832100 3887600 0 0 0 5719700 1832100 3887600 6383 229 6532 16920;16921 26482;26483 26482 2 IIQQVLQGLDYLHTK IKSNYQGLPLPCVKKIIQQVLQGLDYLHTK IIQQVLQGLDYLHTKCRIIHTDIKPENILL K I I T K C 0 0 0 1 0 3 0 1 1 2 3 1 0 0 0 0 1 0 1 1 0 0 15 0 1767.9883 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9 Q96SB4 192 206 SRPK1 SRSF protein kinase 1 yes no 3 6.7591E-05 63.128 2 1.9474 2.1186 NaN 1 Median 1.9474 2.1186 NaN 1 0 Median NaN NaN NaN 0 0 Median 62419000 16702000 45717000 62419000 16702000 45717000 0 0 0 6384 1988 6533 16922;16923 26484;26485 26484 2 IIQSWEK LSKIAGSSPRLDYSRIIQSWEKISSQQNPN SPRLDYSRIIQSWEKISSQQNPNSNTLGHI R I I E K I 0 0 0 0 0 1 1 0 0 2 0 1 0 0 0 1 0 1 0 0 0 0 7 0 902.48617 P42695;G3V1A9;E9PKK4 P42695 737 743 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.045193 57.281 2 1.7132 1.3969 8.8344 2 Median NaN NaN NaN 0 0 Median 1.7132 1.3969 8.8344 2 0 Median 5309700 1925500 3384200 0 0 0 5309700 1925500 3384200 6385 1565 6534 16924;16925 26486;26487 26486 2 IIQTPGLWESENQNK TCDGVQCAFEELVEKIIQTPGLWESENQNK IIQTPGLWESENQNKGVKLSHREEGQGGGA K I I N K G 0 0 2 0 0 2 2 1 0 2 1 1 0 0 1 1 1 1 0 0 0 0 15 0 1755.8792 Q9NP72;Q5W0J0;A0A087X163;B7Z5V3;Q59EW3 Q9NP72 169 183 RAB18 Ras-related protein Rab-18 yes no 2 0.00050047 71.555 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6100000 0 6100000 6100000 0 6100000 0 0 0 6386 2055 6535 16926 26488;26489 26489 2 IIRPSETAGR PVARYFGIKRGQVVKIIRPSETAGRYITYR GQVVKIIRPSETAGRYITYRLVHP______ K I I G R Y 1 2 0 0 0 0 1 1 0 2 0 0 0 0 1 1 1 0 0 0 0 0 10 1 1098.6146 A0A087WVZ9;E5KT65;P19388;B4DJ89;A0A087WWX0 A0A087WVZ9 166 175 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 3 0.0017339 60.641 1 0.80939 0.88059 NaN 1 Median 0.80939 0.88059 NaN 1 0 Median NaN NaN NaN 0 0 Median 18088000 9685300 8403000 18088000 9685300 8403000 0 0 0 6387 423 6536 16927 26490 26490 1 IISAASEGGANVFTVSYFK ETLINKGFVEIQTPKIISAASEGGANVFTV ASEGGANVFTVSYFKNNAYLAQSPQLYKQM K I I F K N 3 0 1 0 0 0 1 2 0 2 0 1 0 2 0 3 1 0 1 2 0 0 19 0 1959.9942 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 190 208 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 6.1442E-06 78.763 2 2 1.6002 1.6443 24.96 4 Linear 1.518 1.5051 2.9101 2 0 Median 1.2164 0.98486 7.8721 2 0 Median 54939000 21323000 33615000 38700000 13677000 25023000 16238000 7646400 8591900 6388 610 6537 16928;16929;16930;16931 26491;26492;26493;26494;26495;26496;26497 26493 7 IISAISELLER EDDFWADVSTLHVQKIISAISELLERLKSY HVQKIISAISELLERLKSYGEDGTAAKHLF K I I E R L 1 1 0 0 0 0 2 0 0 3 2 0 0 0 0 2 0 0 0 0 0 0 11 0 1242.7184 Q9NU22;Q6PJJ1;Q6AI22 Q9NU22 4574 4584 MDN1;DKFZp686H16106 Midasin yes no 2 0.011078 57.859 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6389 2071 6538 16932 26498 26498 1 IISDNLTYCK RCREWYGWHFPELGKIISDNLTYCKCLQKV PELGKIISDNLTYCKCLQKVGDRKNYASAK K I I C K C 0 0 1 1 1 0 0 0 0 2 1 1 0 0 0 1 1 0 1 0 0 0 10 0 1225.6013 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 197 206 NOP58 Nucleolar protein 58 yes no 2 1.6639E-05 100.25 2 2 0.8498 0.80742 4.1081 4 Median 0.72486 0.83157 6.473 2 0 Median 0.97433 0.80742 0.21004 2 0 Median 475330000 276750000 198580000 393490000 234500000 158990000 81841000 42254000 39587000 6390 2129 6539 16933;16934;16935;16936 26499;26500;26501;26502;26503;26504;26505 26502 7 IISLETYNLLR YVRRRLTAEDLFEARIISLETYNLLREGTR FEARIISLETYNLLREGTRSLREALEAESA R I I L R E 0 1 1 0 0 0 1 0 0 2 3 0 0 0 0 1 1 0 1 0 0 0 11 0 1333.7606 Q15149;D3DWL0;Q96IE3 Q15149 3794 3804 PLEC;PLEC1 Plectin yes no 2 1.3943E-10 135.79 2 2 1.9723 1.9163 7.7661 4 Median 1.6911 1.8672 7.595 2 0 Median 2.4178 1.9884 9.1521 2 0 Median 114970000 42715000 72257000 94532000 36294000 58238000 20440000 6421200 14019000 6391 1754 6540 16937;16938;16939;16940 26506;26507;26508;26509;26510;26511;26512;26513 26509 8 IISNASCTTNCLAPLAK FVMGVNHEKYDNSLKIISNASCTTNCLAPL SNASCTTNCLAPLAKVIHDNFGIVEGLMTT K I I A K V 3 0 2 0 2 0 0 0 0 2 2 1 0 0 1 2 2 0 0 0 0 0 17 0 1832.9125 V9HVZ4;P04406;Q2TSD0;Q0QET7;E7EUT5;A4UCT1;B4DRV9 V9HVZ4 146 162 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 7.1332E-13 120.87 2 1 2.3891 2.7047 NaN 1 Median 2.3891 2.7047 NaN 1 0 Median NaN NaN NaN 0 0 Median 198250000 27727000 170520000 179820000 27727000 152090000 18427000 0 18427000 6392 1442 6541 16941;16942;16943 26514;26515;26516;26517 26515 4 IISNVPADSLIR FLPHKYDVKLQNEDKIISNVPADSLIRTER EDKIISNVPADSLIRTERPPNKEIVRYFIR K I I I R T 1 1 1 1 0 0 0 0 0 3 1 0 0 0 1 2 0 0 0 1 0 0 12 0 1296.7402 Q9UIG0 Q9UIG0 232 243 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.0535E-12 130.98 2 2 57.143 56.819 6.6984 3 Plateau 49.117 56.819 NaN 1 0 Median 59.172 50.877 2.8934 2 0 Median 415550000 9919300 405630000 354710000 8776100 345940000 60838000 1143200 59694000 6393 2103 6542 16944;16945;16946;16947 26518;26519;26520;26521 26519 3 IISSDRDLLAVVFYGTEK FDMSIQCIQSVYISKIISSDRDLLAVVFYG SDRDLLAVVFYGTEKDKNSVNFKNIYVLQE K I I E K D 1 1 0 2 0 0 1 1 0 2 2 1 0 1 0 2 1 0 1 2 0 0 18 1 2025.0783 A0A024R1N4;P12956;B1AHC9;B2RDN9 A0A024R1N4 75 92 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 1.1417E-05 69.737 2 2 0.343 0.346 36.931 4 Median 0.40084 0.47646 0.57416 2 0 Median 0.29083 0.25133 0.5354 2 0 Median 241300000 174910000 66389000 178300000 126420000 51878000 63001000 48489000 14511000 6394 82 6543 16948;16949;16950;16951 26522;26523;26524;26525;26526;26527;26528;26529;26530 26529 9 IISSIEQK VAYKNVIGARRASWRIISSIEQKEENKGGE ARRASWRIISSIEQKEENKGGEDKLKMIRE R I I Q K E 0 0 0 0 0 1 1 0 0 3 0 1 0 0 0 2 0 0 0 0 0 0 8 0 916.52295 V9HW98;P62258;G9K389;G9K388;B4DJB0;B4DJF2;I3L3T1;K7EIT4 V9HW98 62 69 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 2 0.020126 65.313 2 1.5069 1.5256 NaN 1 Median 1.5069 1.5256 NaN 1 0 Median NaN NaN NaN 0 0 Median 23001000 5852500 17148000 23001000 5852500 17148000 0 0 0 6395 1637 6544 16952;16953 26531;26532 26531 2 IISSLSSAFHVFEDGNK FQKNVRSSGAWGVNKIISSLSSAFHVFEDG SSLSSAFHVFEDGNKENYGLPQPKNKPTGA K I I N K E 1 0 1 1 0 0 1 1 1 2 1 1 0 2 0 4 0 0 0 1 0 0 17 0 1849.921 A0JLU2;B4DYG2;O43683;A8K5A6 A0JLU2 519 535 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 3 0.054184 9.6577 1 1.2057 0.95631 NaN 1 Median NaN NaN NaN 0 0 Median 1.2057 0.95631 NaN 1 0 Median 4480500 1818500 2662000 0 0 0 4480500 1818500 2662000 6396 641 6545 16954 26533 26533 1 IISVFVDALPHVPEHR DSIEVSRNVEEIVVKIISVFVDALPHVPEH ISVFVDALPHVPEHRRLPILVQLVDTLGAE K I I H R R 1 1 0 1 0 0 1 0 2 2 1 0 0 1 2 1 0 0 0 3 0 0 16 0 1827.9996 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1379 1394 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.050258 15.392 1 1.2701 1.0769 NaN 1 Median NaN NaN NaN 0 0 Median 1.2701 1.0769 NaN 1 0 Median 5093800 2136000 2957800 0 0 0 5093800 2136000 2957800 6397 897 6546 16955 26534 26534 1 IITDVIGNPEEERR DFIQEWLRSQRRDLKIITDVIGNPEEERRA KIITDVIGNPEEERRAAFYHQPWAQEAVGR K I I R R A 0 2 1 1 0 0 3 1 0 3 0 0 0 0 1 0 1 0 0 1 0 0 14 1 1639.8529 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 406 419 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 3 0.00097213 49.31 1 2 1.1005 0.99403 29.253 2 Median NaN NaN NaN 0 0 Median 1.1005 0.99403 29.253 2 0 Median 12653000 10745000 1907800 9313300 9313300 0 3339900 1432100 1907800 6398 1120 6547 16956;16957;16958 26535;26536;26537 26535 3 IITHPNFNGNTLDNDIMLIK IDVLEGNEQFINAAKIITHPNFNGNTLDND NFNGNTLDNDIMLIKLSSPATLNSRVATVS K I I I K L 0 0 4 2 0 0 0 1 1 4 2 1 1 1 1 0 2 0 0 0 0 0 20 0 2282.1729 CON__P00761 CON__P00761 78 97 yes yes 3 2.2322E-14 86.727 1 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73453000 73453000 0 22455000 22455000 0 50999000 50999000 0 + 6399 1148 6548;6549 16959;16960;16961;16962;16963 26538;26539;26540;26541;26542;26543;26544 26543 854 7 IITLAGPTNAIFK SGARINISEGNCPERIITLAGPTNAIFKAF ERIITLAGPTNAIFKAFAMIIDKLEEDISS R I I F K A 2 0 1 0 0 0 0 1 0 3 1 1 0 1 1 0 2 0 0 0 0 0 13 0 1357.7969 H3BRU6;F8VZX2;B4DRD7;F8W0G4;F8VXH9;F8W1G6;Q15366;B4DLC0 Q15366 39 51 PCBP2 Poly(rC)-binding protein 2 no no 2 8.9801E-09 116.13 2 2 2.0344 2.7605 32.577 4 Linear 2.2203 2.6018 0.90379 2 0 Median 1.8159 1.4816 3.5032 2 0 Median 678110000 213220000 464900000 621870000 194290000 427580000 56244000 18923000 37321000 6400 1263;1760 6550 16964;16965;16966;16967 26545;26546;26547;26548;26549;26550;26551 26548 7 IITLTGPTNAIFK SGARINISEGNCPERIITLTGPTNAIFKAF ERIITLTGPTNAIFKAFAMIIDKLEEDINS R I I F K A 1 0 1 0 0 0 0 1 0 3 1 1 0 1 1 0 3 0 0 0 0 0 13 0 1387.8075 Q53SS8;Q15365 Q53SS8 58 70 PCBP1 Poly(rC)-binding protein 1 yes no 2 4.3383E-05 97.284 2 2 1.5719 1.4899 38.245 4 Median 1.87 2.1054 6.2366 2 0 Median 1.3619 1.089 1.6606 2 0 Median 253460000 92197000 161260000 214380000 75872000 138510000 39082000 16326000 22757000 6401 1759 6551 16968;16969;16970;16971 26552;26553;26554;26555;26556;26557;26558;26559 26557 8 IITPLNK HSWALSAIDELKVDKIITPLNKDHIPITDS IDELKVDKIITPLNKDHIPITDSPVVVQQH K I I N K D 0 0 1 0 0 0 0 0 0 2 1 1 0 0 1 0 1 0 0 0 0 0 7 0 797.50109 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 434 440 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.02673 77.374 2 1.2496 1.3381 NaN 1 Median 1.2496 1.3381 NaN 1 0 Median NaN NaN NaN 0 0 Median 21225000 7235100 13990000 21225000 7235100 13990000 0 0 0 6402 39 6552 16972;16973 26560;26561 26561 2 IITYASSSDSTSLLAK IGETTVRDIRKNKEKIITYASSSDSTSLLA ITYASSSDSTSLLAKRKSMKPSMYEELDRA K I I A K R 2 0 0 1 0 0 0 0 0 2 2 1 0 0 0 5 2 0 1 0 0 0 16 0 1655.8618 Q9Y4A0 Q9Y4A0 52 67 JRKL Jerky protein homolog-like yes yes 2 0.019615 28.903 1 1.7968 1.5178 NaN 1 Median NaN NaN NaN 0 0 Median 1.7968 1.5178 NaN 1 0 Median 1964000 929980 1034000 0 0 0 1964000 929980 1034000 6403 2144 6553 16974 26562 26562 1 IIVDELK AATGPSIKIWDLEGKIIVDELKQEVISTSS KIWDLEGKIIVDELKQEVISTSSKAEPPQC K I I L K Q 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 E9KL35;P63244;J3KPE3;D6RAC2;H0Y8W2;H0YAF8;H0YAM7;D6REE5;D6RF23;H0Y9P0 E9KL35 265 271 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.02688 74.415 1 1 1.8267 1.7281 23.889 2 Median 1.7804 2.0461 NaN 1 0 Median 1.8742 1.4595 NaN 1 0 Median 188380000 77032000 111340000 172740000 71503000 101240000 15637000 5529200 10108000 6404 1227 6554 16975;16976 26563;26564;26565 26563 3 IIVDTYGGWGAHGGGAFSGK VIGGPQGDAGLTGRKIIVDTYGGWGAHGGG YGGWGAHGGGAFSGKDYTKVDRSAAYAARW K I I G K D 2 0 0 1 0 0 0 7 1 2 0 1 0 1 0 1 1 1 1 1 0 0 20 0 1948.9432 A0A140VJP5;P31153;B4DEX8;B4DN74;A8K455;Q00266 A0A140VJP5 266 285 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-1 yes no 3 0.052391 14.107 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7721900 7721900 0 7721900 7721900 0 0 0 0 6405 606 6555 16977 26566 26566 1 IIVEGGGAVAALQAMK AALCFLALRKPDNSRIIVEGGGAVAALQAM IVEGGGAVAALQAMKAHPQKAGVQKQACML R I I M K A 4 0 0 0 0 1 1 3 0 2 1 1 1 0 0 0 0 0 0 2 0 0 16 0 1526.849 Q6NXE6;B4E1N1;Q68CW5;H0YGQ5 Q6NXE6 407 422 ARMC6;DKFZp762A1314 Armadillo repeat-containing protein 6 yes no 2 0.00046303 57.019 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6406 1848 6556 16978 26567 26567 1697 1 IIVFADNVFALK ACQFLIKFHERRNDKIIVFADNVFALKEYA NDKIIVFADNVFALKEYAIRLNKPYIYGPT K I I L K E 2 0 1 1 0 0 0 0 0 2 1 1 0 2 0 0 0 0 0 2 0 0 12 0 1348.7755 G3V1S1;B3KTH1;B3KRG2;A8K359;P19447;Q53HW5 G3V1S1 494 505 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 2 0.0079412 57.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1940900 1940900 0 1940900 1940900 0 0 0 0 6407 717 6557 16979 26568 26568 1 IIVLGLLPR EAIVQLINTRQPQAKIIVLGLLPRGEKPNP RQPQAKIIVLGLLPRGEKPNPLRQKNAKVN K I I P R G 0 1 0 0 0 0 0 1 0 2 3 0 0 0 1 0 0 0 0 1 0 0 9 0 992.67464 J3KNE3;V9HW44;P68402 J3KNE3 80 88 PAFAH1B2;HEL-S-303 Platelet-activating factor acetylhydrolase IB subunit beta yes no 2 0.0057956 73.616 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4730400 0 4730400 4730400 0 4730400 0 0 0 6408 1325 6558 16980;16981 26569;26570 26570 2 IIWTEQANEK GLSEAAGQTAQMLERIIWTEQANEKMNAKL QMLERIIWTEQANEKMNAKLEELRQHAACK R I I E K M 1 0 1 0 0 1 2 0 0 2 0 1 0 0 0 0 1 1 0 0 0 0 10 0 1230.6245 Q59HG1 Q59HG1 423 432 Kinesin-like protein yes yes 2 4.0192E-08 117.81 2 1 0.70025 0.77574 32.889 3 Median 0.66338 0.73703 7.2382 2 0 Median 1.5673 1.2938 NaN 1 0 Median 119450000 69378000 50068000 108120000 64882000 43234000 11330000 4496200 6833700 6409 1803 6559 16982;16983;16984 26571;26572;26573;26574;26575 26571 5 IIYIAPMR KHINMDGTINVDDFKIIYIAPMRSLVQEMV INVDDFKIIYIAPMRSLVQEMVGSFGKRLA K I I M R S 1 1 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 1 0 0 0 8 0 975.55756 O75643;A4FU77;Q9H8B9;Q5ZF01 O75643 538 545 SNRNP200;ASCC3L1 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0050569 72.234 2 1.5317 1.6768 NaN 1 Median 1.5317 1.6768 NaN 1 0 Median NaN NaN NaN 0 0 Median 30924000 11605000 19319000 30924000 11605000 19319000 0 0 0 6410 1411 6560 16985;16986 26576;26577;26578 26577 1092 3 IIYVPLPDAATR DRIDKALMRPGRIDRIIYVPLPDAATRREI IDRIIYVPLPDAATRREIFKLQFHSMPVSN R I I T R R 2 1 0 1 0 0 0 0 0 2 1 0 0 0 2 0 1 0 1 1 0 0 12 0 1327.75 Q8NB90 Q8NB90 791 802 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 0.021578 38.567 1 0.77302 0.7694 NaN 1 Median 0.77302 0.7694 NaN 1 0 Median NaN NaN NaN 0 0 Median 8066700 4328700 3738000 8066700 4328700 3738000 0 0 0 6411 1919 6561 16987 26579 26579 1 IKEDLEEQEALEDGVACADEK VLYLLELYCEDKQSKIKEDLEEQEALEDGV EQEALEDGVACADEKAESDGEEKEEVKEEL K I K E K A 3 0 0 3 1 1 6 1 0 1 2 2 0 0 0 0 0 0 0 1 0 0 21 1 2390.0795 O75691;B4DN27 O75691 2578 2598 UTP20 Small subunit processome component 20 homolog yes no 3 1.3441E-08 75.054 2 1 0.90475 1.0428 48.206 3 Median 1.0977 1.2806 29.058 2 0 Median 0.71154 0.60174 NaN 1 0 Median 50093000 27053000 23040000 43096000 23212000 19883000 6997600 3840900 3156700 6412 1412 6562 16988;16989;16990 26580;26581;26582;26583;26584;26585;26586 26582 7 IKNENTEGSPQEDGVELEGLK TIEMKAEAEKKNKKKIKNENTEGSPQEDGV EGSPQEDGVELEGLKQRLEKKQKREPGTKT K I K L K Q 0 0 2 1 0 1 5 3 0 1 2 2 0 0 1 1 1 0 0 1 0 0 21 1 2285.1023 P11388 P11388 1239 1259 TOP2A DNA topoisomerase 2-alpha yes yes 3 4.0285E-05 39.507 2 0.8406 0.71461 0.56913 2 Median NaN NaN NaN 0 0 Median 0.8406 0.71461 0.56913 2 0 Median 41551000 23173000 18378000 0 0 0 41551000 23173000 18378000 6413 1471 6563 16991;16992 26587;26588;26589;26590;26591 26591 5 IKPAATSHVEGSGGVSAK PASFRKSTYWMKMRRIKPAATSHVEGSGGV AATSHVEGSGGVSAKGKRKPRQEEDEDYRE R I K A K G 3 0 0 0 0 0 1 3 1 1 0 2 0 0 1 3 1 0 0 2 0 0 18 1 1694.8951 G3XAG1;Q96ME7;B4DES6;B7Z9P6 G3XAG1 82 99 ZNF512 Zinc finger protein 512 yes no 3 2.1219E-05 59.281 1 0.87293 0.74306 NaN 1 Median NaN NaN NaN 0 0 Median 0.87293 0.74306 NaN 1 0 Median 5427500 3200700 2226800 0 0 0 5427500 3200700 2226800 6414 1275 6564 16993 26592;26593 26593 2 IKPQFEGR DDDESDSEDDSNRFKIKPQFEGRAGQKLMD DDSNRFKIKPQFEGRAGQKLMDLQSHFGTD K I K G R A 0 1 0 0 0 1 1 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 8 1 973.53451 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50 A0A024R250 860 867 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 3 0.006759 62.546 1 1.044 1.1727 NaN 1 Median 1.044 1.1727 NaN 1 0 Median NaN NaN NaN 0 0 Median 13011000 6322900 6688500 13011000 6322900 6688500 0 0 0 6415 104 6565 16994 26594 26594 1 IKPSESNVTILGR IVCWKPGKMEDDIDKIKPSESNVTILGRFD DKIKPSESNVTILGRFDYSQCDIWYMRFSM K I K G R F 0 1 1 0 0 0 1 1 0 2 1 1 0 0 1 2 1 0 0 1 0 0 13 1 1412.7987 O75530;B4DVW7;E9PJK2;H0YEL4;E9PMU3 O75530 343 355 EED Polycomb protein EED yes no 2;3 0.0015481 66.267 3 1.0122 1.1955 8.4646 3 Median 1.0122 1.1955 8.4646 3 0 Median NaN NaN NaN 0 0 Median 263210000 131140000 132070000 263210000 131140000 132070000 0 0 0 6416 1407 6566 16995;16996;16997 26595;26596;26597;26598;26599 26597 5 ILAAIIMK DTLTNSFQPSLLGRKILAAIIMKKDSEDMG PSLLGRKILAAIIMKKDSEDMGVVVSLGTG K I L M K K 2 0 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 0 8 0 871.5565 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 868 875 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.016247 60.294 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6417 5 6567 16998 26600 26600 4 1 ILAASWPQNREDEEK SDEEEGTSSQAEAARILAASWPQNREDEEK ILAASWPQNREDEEKQKLKGGPKKTKREKK R I L E K Q 2 1 1 1 0 1 3 0 0 1 1 1 0 0 1 1 0 1 0 0 0 0 15 1 1784.8693 A0A024R2M8;X5DRB1;D9I4E1;Q01831 A0A024R2M8 899 913 XPC DNA repair protein complementing XP-C cells yes no 3 0.001226 48.704 2 2 0.96066 0.79515 17.814 3 Median 0.58368 0.63951 NaN 1 0 Median 1.0116 0.85078 9.5639 2 0 Median 33111000 22476000 10635000 26338000 19142000 7195900 6773500 3334200 3439300 6418 118 6568 16999;17000;17001;17002 26601;26602;26603;26604;26605;26606;26607 26603 7 ILACHGTDSVLELFCILSK GRDRVVNLAVDKTGRILACHGTDSVLELFC HGTDSVLELFCILSKKEIQKKMDKKMKKAR R I L S K K 1 0 0 1 2 0 1 1 1 2 4 1 0 1 0 2 1 0 0 1 0 0 19 0 2175.1068 Q5TDG3;Q9UNX4 Q5TDG3 293 311 WDR3 WD repeat-containing protein 3 yes no 3 1.2141E-08 92.307 2 0.86763 0.92945 4.6883 2 Median 0.86763 0.92945 4.6883 2 0 Median NaN NaN NaN 0 0 Median 75610000 39341000 36269000 75610000 39341000 36269000 0 0 0 6419 1827 6569 17003;17004 26608;26609;26610 26608 3 ILADPSDDTK DVAYRCGYFDEEMNRILADPSDDTKGFFDP EEMNRILADPSDDTKGFFDPNTHENLTYLQ R I L T K G 1 0 0 3 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 10 0 1073.5241 A0A075B730;A0A087X1U6;P58107 A0A075B730 1692 1701 EPPK1 Epiplakin no no 2 0.00082113 80.688 2 0.46614 0.47076 4.1799 2 Median 0.46614 0.47076 4.1799 2 0 Median NaN NaN NaN 0 0 Median 42701000 22469000 20232000 42701000 22469000 20232000 0 0 0 6420 397;1622 6570 17005;17006 26611;26612 26612 2 ILAGALIK I L I K 2 0 0 0 0 0 0 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 8 0 797.53747 REV__C9JEX3 yes no 2 0.0043566 93.885 1 1.3858 1.4336 NaN 1 Median 1.3858 1.4336 NaN 1 0 Median NaN NaN NaN 0 0 Median 12721000 4800200 7921000 12721000 4800200 7921000 0 0 0 + 6421 2156 6571 17007 26613 26613 1 ILAGLGFDPEMQNRPTQK LRATGAAAAEAKARRILAGLGFDPEMQNRP GLGFDPEMQNRPTQKFSGGWRMRVSLARAL R I L Q K F 1 1 1 1 0 2 1 2 0 1 2 1 1 1 2 0 1 0 0 0 0 0 18 1 2014.0306 Q8NE71;Q2L6I2;B4DNU2;Q59F96;H0YGW7 Q8NE71 434 451 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 1.6059E-05 53.779 2 0.92837 1.085 5.0779 2 Median 0.92837 1.085 5.0779 2 0 Median NaN NaN NaN 0 0 Median 77949000 40562000 37387000 77949000 40562000 37387000 0 0 0 6422 1926 6572 17008;17009 26614;26615;26616;26617 26617 1757 4 ILAHNNFVGR KEAQDIKFTEEIPLKILAHNNFVGRLIGKE EIPLKILAHNNFVGRLIGKEGRNLKKIEQD K I L G R L 1 1 2 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1139.62 O00425;Q9NZI8;D3DTW3 O00425 281 290 IGF2BP3;IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 1 no no 2;3 5.1446E-06 83.948 3 1.9876 2.1898 13.86 2 Median 1.9876 2.1898 13.86 2 0 Median NaN NaN NaN 0 0 Median 94398000 30888000 63511000 94398000 30888000 63511000 0 0 0 6423 1364;2087 6573 17010;17011;17012 26618;26619;26620;26621 26619 4 ILAIGLINEALDEGDAQK CVDHVNLVVQEEHERILAIGLINEALDEGD IGLINEALDEGDAQKTLQALQIPAAKLEGV R I L Q K T 3 0 1 2 0 1 2 2 0 3 3 1 0 0 0 0 0 0 0 0 0 0 18 0 1882.0048 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 539 556 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 1.2167E-08 121.28 1 1.5012 1.5607 NaN 1 Median 1.5012 1.5607 NaN 1 0 Median NaN NaN NaN 0 0 Median 16919000 7358200 9560700 16919000 7358200 9560700 0 0 0 6424 352 6574 17013 26622 26622 1 ILALLDALSTVHSQK DRRRPAVIREPHERKILALLDALSTVHSQK ILALLDALSTVHSQKMKKAKEQRHLHNKEH K I L Q K M 2 0 0 1 0 1 0 0 1 1 4 1 0 0 0 2 1 0 0 1 0 0 15 0 1607.9247 Q14692 Q14692 1207 1221 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2;3 2.5246E-05 88.021 4 4 1.0203 1.0236 11.805 7 Median 0.94807 1.0028 4.7774 4 0 Median 1.4192 1.1269 11.43 3 0 Median 145300000 68873000 76432000 103800000 54104000 49696000 41505000 14769000 26736000 6425 1742 6575 17014;17015;17016;17017;17018;17019;17020;17021 26623;26624;26625;26626;26627;26628;26629;26630;26631;26632;26633;26634;26635;26636;26637;26638;26639 26636 17 ILAMNHLK TSLMLSLNHPLAPVRILAMNHLKKIMKTSK HPLAPVRILAMNHLKKIMKTSKEGVDESFI R I L L K K 1 0 1 0 0 0 0 0 1 1 2 1 1 0 0 0 0 0 0 0 0 0 8 0 938.53716 B2RWN5;Q9H583;Q5T3Q7 B2RWN5 496 503 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0015171 89.673 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19865000 10422000 9443300 19865000 10422000 9443300 0 0 0 6426 897 6576 17022;17023;17024 26640;26641;26642 26642 709 3 ILAQDVAQLK EEAKRHLNDLLEDRKILAQDVAQLKEKKES LEDRKILAQDVAQLKEKKESGENPPPKLRR K I L L K E 2 0 0 1 0 2 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1097.6445 Q59HG1;O95239;Q6PKB2;B3KNC0 Q59HG1 776 785 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.00089646 79.474 2 2 1.1299 1.0819 14.505 4 Median 0.83898 0.95546 2.7737 2 0 Median 1.5246 1.2246 2.7174 2 0 Median 304610000 155050000 149560000 260750000 137850000 122910000 43857000 17201000 26656000 6427 1803 6577 17025;17026;17027;17028 26643;26644;26645;26646;26647;26648;26649;26650 26644 8 ILAQVVGDVDTSLPR SQRSFVEFILEPLYKILAQVVGDVDTSLPR ILAQVVGDVDTSLPRTLDELGIHLTKEELK K I L P R T 1 1 0 2 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 3 0 0 15 0 1581.8726 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 331 345 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 1.0185E-11 117.23 2 2 0.88282 0.72333 9.5869 2 Median NaN NaN NaN 0 0 Median 0.88282 0.72333 9.5869 2 0 Median 53619000 39444000 14175000 22714000 22714000 0 30906000 16730000 14175000 6428 794 6578 17029;17030;17031;17032 26651;26652;26653;26654;26655;26656;26657 26652 7 ILATDVSSK EATNRSVQAHEVHQKILATDVSSKNTPDSK HEVHQKILATDVSSKNTPDSKKISSRNIND K I L S K N 1 0 0 1 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 1 0 0 9 0 932.51786 Q03188;H0Y8J2 Q03188 120 128 CENPC Centromere protein C yes no 2 0.0096208 60.019 1 0.69482 0.69995 NaN 1 Median 0.69482 0.69995 NaN 1 0 Median NaN NaN NaN 0 0 Median 27884000 15170000 12715000 27884000 15170000 12715000 0 0 0 6429 1681 6579 17033 26658;26659 26658 2 ILATTPSAVFR GGGVTNLLWSPDGSKILATTPSAVFRVWEA DGSKILATTPSAVFRVWEAQMWTCERWPTL K I L F R V 2 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 2 0 0 1 0 0 11 0 1174.671 B4DDU7;Q53HS1;Q9NRG9;F8VZ44;H3BU82 B4DDU7 269 279 AAAS Aladin yes no 2 0.0058056 55.549 1 3.3224 3.3148 NaN 1 Median 3.3224 3.3148 NaN 1 0 Median NaN NaN NaN 0 0 Median 8729900 1423800 7306100 8729900 1423800 7306100 0 0 0 6430 961 6580 17034 26660 26660 1 ILCDVPCSGDGTMR QIDVDGRKEILFYDRILCDVPCSGDGTMRK RILCDVPCSGDGTMRKNIDVWKKWTTLNSL R I L M R K 0 1 0 2 2 0 0 2 0 1 1 0 1 0 1 1 1 0 0 1 0 0 14 0 1579.6793 Q08J23 Q08J23 265 278 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.0005156 56.359 1 1.6909 1.6957 NaN 1 Median 1.6909 1.6957 NaN 1 0 Median NaN NaN NaN 0 0 Median 11273000 5799500 5473300 11273000 5799500 5473300 0 0 0 6431 1694 6581 17035 26661;26662 26661 1523 2 ILCEQCMTSNQK RTDFTPHWKQEKNGKILCEQCMTSNQKKAL NGKILCEQCMTSNQKKALKAEHTNRLKNAF K I L Q K K 0 0 1 0 2 2 1 0 0 1 1 1 1 0 0 1 1 0 0 0 0 0 12 0 1510.6578 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR30 A0A0U1RRM1 423 434 GATAD2B Transcriptional repressor p66-beta yes no 2 1.2211E-08 119.68 3 0.77967 0.77816 0.89685 2 Median 0.77967 0.77816 0.89685 2 0 Median NaN NaN NaN 0 0 Median 17209000 10090000 7118600 17209000 10090000 7118600 0 0 0 6432 591 6582 17036;17037;17038 26663;26664;26665;26666 26663 448 4 ILCFYGPPGVGK EFIAVSQLRGSTQGKILCFYGPPGVGKTSI QGKILCFYGPPGVGKTSIARSIARALNREY K I L G K T 0 0 0 0 1 0 0 3 0 1 1 1 0 1 2 0 0 0 1 1 0 0 12 0 1306.6744 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ER27 K7EJE8 388 399 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.028936 46.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6433 946 6583 17039 26667 26667 1 ILDAVVAQEPLHR EGPLCDELIRNVKFKILDAVVAQEPLHRGG FKILDAVVAQEPLHRGGGQIIPTARRVVYS K I L H R G 2 1 0 1 0 1 1 0 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 0 1459.8147 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;K7EP67;K7EJ74 B4DZB1 742 754 U5-116KD;EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.052025 37.968 1 1.0281 0.92706 NaN 1 Median NaN NaN NaN 0 0 Median 1.0281 0.92706 NaN 1 0 Median 743250 383630 359630 0 0 0 743250 383630 359630 6434 794 6584 17040 26668 26668 1 ILDDDTIITTLENLK LEKSLLQALNEVKGRILDDDTIITTLENLK ILDDDTIITTLENLKREAAEVTRKVEETDI R I L L K R 0 0 1 3 0 0 1 0 0 3 3 1 0 0 0 0 3 0 0 0 0 0 15 0 1715.9193 Q14204 Q14204 3760 3774 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 4.4612E-15 127.56 2 2.1498 2.1423 4.7821 2 Median 2.1498 2.1423 4.7821 2 0 Median NaN NaN NaN 0 0 Median 23712000 8338200 15373000 23712000 8338200 15373000 0 0 0 6435 1729 6585 17041;17042 26669;26670;26671;26672 26671 4 ILDDTEDTVVSQR KRKNSQPGVKVADRKILDDTEDTVVSQRKK RKILDDTEDTVVSQRKKIQINQEEERLKNE K I L Q R K 0 1 0 3 0 1 1 0 0 1 1 0 0 0 0 1 2 0 0 2 0 0 13 0 1489.726 P42696;A2A2V2;Q5TCT4 P42696 157 169 RBM34 RNA-binding protein 34 yes no 2 5.4382E-24 160.18 2 1 0.94619 1.0857 19.484 3 Plateau 0.94829 1.0633 4.5663 2 0 Median 0.93399 0.76232 NaN 1 0 Median 121160000 59353000 61812000 108270000 53281000 54993000 12891000 6072000 6818700 6436 1566 6586 17043;17044;17045 26673;26674;26675;26676;26677;26678 26674 6 ILDIDIPMSVGIIDPR HQQLEGWRWNRPGDRILDIDIPMSVGIIDP LDIDIPMSVGIIDPRANPTQLNTVEFLWDP R I L P R A 0 1 0 3 0 0 0 1 0 5 1 0 1 0 2 1 0 0 0 1 0 0 16 0 1765.9648 A0A024R120;Q12800;F8VWL0;F8VX55 A0A024R120 149 164 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.00042877 47.559 1 1.6029 1.6449 NaN 1 Median 1.6029 1.6449 NaN 1 0 Median NaN NaN NaN 0 0 Median 6487400 2544200 3943200 6487400 2544200 3943200 0 0 0 6437 66 6587 17046 26679;26680 26680 38 2 ILDLGFEK HFSRLRWLVFDEADRILDLGFEKDITVILN VFDEADRILDLGFEKDITVILNAVNAECQK R I L E K D 0 0 0 1 0 0 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 933.51713 B4DYZ1;F8WAJ0;Q9H8H2 B4DYZ1 264 271 DDX31 Probable ATP-dependent RNA helicase DDX31 no no 2 0.009998 75.738 3 0.60898 0.61901 NaN 1 Median 0.60898 0.61901 NaN 1 0 Median NaN NaN NaN 0 0 Median 20553000 8200400 12352000 20553000 8200400 12352000 0 0 0 6438 1053;1268 6588 17047;17048;17049 26681;26682;26683 26681 3 ILDLLNEGSAR ELQISPELLAHGRQKILDLLNEGSARDLRS GRQKILDLLNEGSARDLRSLQRIGPKKAQL K I L A R D 1 1 1 1 0 0 1 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 11 0 1199.651 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 592 602 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 4.5284E-22 144.77 4 3 0.80267 0.87895 14.039 3 Median 0.80267 0.87895 14.039 3 0 Median NaN NaN NaN 0 0 Median 126690000 59446000 67239000 108350000 59446000 48900000 18340000 0 18340000 6439 1745 6589 17050;17051;17052;17053;17054;17055;17056 26684;26685;26686;26687;26688;26689;26690;26691;26692 26690 9 ILDLQLEFDEK FVAMIKENLEKMGPRILDLQLEFDEKAVLM MGPRILDLQLEFDEKAVLMENIVYLTNSLE R I L E K A 0 0 0 2 0 1 2 0 0 1 3 1 0 1 0 0 0 0 0 0 0 0 11 0 1361.7078 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 961 971 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 3.1396E-05 100.48 2 1.4626 1.4904 1.6174 2 Median 1.4626 1.4904 1.6174 2 0 Median NaN NaN NaN 0 0 Median 31070000 12670000 18399000 31070000 12670000 18399000 0 0 0 6440 883 6590 17057;17058 26693;26694;26695 26694 3 ILDMCAAPGSK SMIPPLLLNVRPHHKILDMCAAPGSKTTQL PHHKILDMCAAPGSKTTQLIEMLHADMNVP K I L S K T 2 0 0 1 1 0 0 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 11 0 1161.5522 Q08J23 Q08J23 180 190 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.014926 47.844 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6441 1694 6591 17059 26696 26696 1524 1 ILDMCCAPGGK SMLPVMALAPQEHERILDMCCAPGGKTSYM EHERILDMCCAPGGKTSYMAQLMKNTGVIL R I L G K T 1 0 0 1 2 0 0 2 0 1 1 1 1 0 1 0 0 0 0 0 0 0 11 0 1220.5352 P46087;F5GYR3 P46087 388 398 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 2.2262E-10 130.75 2 3 1.2169 0.96779 33.789 4 Median 1.2409 1.3916 NaN 1 0 Median 1.1934 0.92748 26.746 3 0 Median 92146000 51685000 40461000 79998000 45485000 34513000 12147000 6199800 5947600 6442 1570 6592;6593 17060;17061;17062;17063;17064 26697;26698;26699;26700;26701;26702;26703 26698 1347 7 ILDNTSEPQPGEAR GRLLKPREMEQQMQRILDNTSEPQPGEARL RILDNTSEPQPGEARLAALTAGDRVPWARC R I L A R L 1 1 1 1 0 1 2 1 0 1 1 0 0 0 2 1 1 0 0 0 0 0 14 0 1525.7372 B2RAQ8;A0A024R5F4;P50416 B2RAQ8 366 379 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes no 2 2.8751E-09 114.83 2 1.3393 1.3456 21.395 2 Median 1.3393 1.3456 21.395 2 0 Median NaN NaN NaN 0 0 Median 19133000 11667000 7465500 19133000 11667000 7465500 0 0 0 6443 179 6594 17065;17066 26704;26705;26706 26706 3 ILDPEGLALGAVIASSK DGFEIVPIEDPAKHRILDPEGLALGAVIAS DPEGLALGAVIASSKKAKRDLIDNSFNRYT R I L S K K 3 0 0 1 0 0 1 2 0 2 3 1 0 0 1 2 0 0 0 1 0 0 17 0 1652.9349 Q8IY81;B4DKU3 Q8IY81 662 678 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 1.4253E-26 150.26 2 2 0.99973 0.99407 5.1887 4 Median 0.91304 1.0269 1.5718 2 0 Median 1.1048 0.94773 3.723 2 0 Median 428700000 213040000 215660000 223240000 115500000 107740000 205460000 97543000 107920000 6444 1898 6595 17067;17068;17069;17070 26707;26708;26709;26710;26711;26712;26713;26714 26711 8 ILDSAEFIK SFKAPSYLEISSMRRILDSAEFIKFTVIRP ISSMRRILDSAEFIKFTVIRPFPGLVINNQ R I L I K F 1 0 0 1 0 0 1 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1034.5648 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9;B4DM07 X5D2J9 888 896 GTF2I General transcription factor II-I yes no 2 0.012937 64.42 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30876000 30876000 0 30876000 30876000 0 0 0 0 6445 789 6596 17071;17072 26715;26716;26717 26715 3 ILDSFAAAPVPTTTLVLK SEQSVAVMPEPSMTKILDSFAAAPVPTTTL SFAAAPVPTTTLVLKSSEPVVTMSVEYQMK K I L L K S 3 0 0 1 0 0 0 0 0 1 3 1 0 1 2 1 3 0 0 2 0 0 18 0 1856.0659 P18583;D3DSF7;B3KRA1 P18583 241 258 SON Protein SON yes no 2 0.000741 41.401 2 1.1763 1.2198 1.9628 2 Median 1.1763 1.2198 1.9628 2 0 Median NaN NaN NaN 0 0 Median 35772000 17280000 18492000 35772000 17280000 18492000 0 0 0 6446 1499 6597 17073;17074 26718;26719 26718 2 ILDSVGIEADDDR ALGGNSSPSAKDIKKILDSVGIEADDDRLN KKILDSVGIEADDDRLNKVISELNGKNIED K I L D R L 1 1 0 4 0 0 1 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1416.6733 A0A024RCA7;P05387 A0A024RCA7 26 38 RPLP2 60S acidic ribosomal protein P2 yes no 2 1.1823E-08 113.22 1 0.71486 0.79737 NaN 1 Median 0.71486 0.79737 NaN 1 0 Median NaN NaN NaN 0 0 Median 44072000 29592000 14481000 44072000 29592000 14481000 0 0 0 6447 356 6598 17075 26720 26720 1 ILDSVGIEADDDRLNK ALGGNSSPSAKDIKKILDSVGIEADDDRLN LDSVGIEADDDRLNKVISELNGKNIEDVIA K I L N K V 1 1 1 4 0 0 1 1 0 2 2 1 0 0 0 1 0 0 0 1 0 0 16 1 1771.8952 A0A024RCA7;P05387 A0A024RCA7 26 41 RPLP2 60S acidic ribosomal protein P2 yes no 2;3 1.3986E-16 121.02 4 2 0.75597 0.89546 27.713 6 Median 0.76982 0.9142 3.9235 4 0 Median 0.65179 0.54317 7.6837 2 0 Median 896420000 506080000 390340000 885660000 499350000 386320000 10758000 6730300 4027900 6448 356 6599 17076;17077;17078;17079;17080;17081 26721;26722;26723;26724;26725;26726;26727;26728;26729;26730;26731 26725 11 ILDVASLEVLNEVNR LKMRQGEEVFQSLSKILDVASLEVLNEVNR ILDVASLEVLNEVNRRSLKKLASQADSTEQ K I L N R R 1 1 2 1 0 0 2 0 0 1 3 0 0 0 0 1 0 0 0 3 0 0 15 0 1682.9203 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2635 2649 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 4.0136E-23 138.45 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4295700 0 4295700 4295700 0 4295700 0 0 0 6449 1205 6600 17082 26732 26732 1 ILDVGFEEELK MYKNLQCLVIDEADRILDVGFEEELKQIIK EADRILDVGFEEELKQIIKLLPTRRQTMLF R I L L K Q 0 0 0 1 0 0 3 1 0 1 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1290.6707 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452 Q4ZG72 214 224 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 6.5485E-08 114.97 2 2 1.304 1.2943 5.1861 4 Median 1.0589 1.2339 5.124 2 0 Median 1.5651 1.3256 1.748 2 0 Median 623600000 293770000 329840000 507490000 248260000 259230000 116110000 45507000 70604000 6450 303 6601 17083;17084;17085;17086 26733;26734;26735;26736;26737;26738;26739;26740 26739 8 ILEAQETFYQQVK LCMGLKAKTKQDLRKILEAQETFYQQVKQL RKILEAQETFYQQVKQLSEAPV________ K I L V K Q 1 0 0 0 0 3 2 0 0 1 1 1 0 1 0 0 1 0 1 1 0 0 13 0 1595.8195 H0YLC9;H0YL20;H0YKG7;B4DFJ1;Q9BSI4 H0YLC9 72 84 TINF2 TERF1-interacting nuclear factor 2 yes no 2 0.00049515 83.499 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3380100 0 3380100 2142800 0 2142800 1237400 0 1237400 6451 970 6602 17087;17088;17089;17090 26741;26742;26743;26744 26741 4 ILEDNSIPQVK AVRVTGADVPMPYAKILEDNSIPQVKDIIF PYAKILEDNSIPQVKDIIFAIKKTLNI___ K I L V K D 0 0 1 1 0 1 1 0 0 2 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1254.682 P11177 P11177 337 347 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 2 0.03337 46.462 1 1.3011 1.2745 NaN 1 Median 1.3011 1.2745 NaN 1 0 Median NaN NaN NaN 0 0 Median 21839000 12068000 9771900 21839000 12068000 9771900 0 0 0 6452 1468 6603 17091 26745 26745 1 ILEDVVGVPEK EDEHFEFHSRPCPTKILEDVVGVPEKKVLP CPTKILEDVVGVPEKKVLPITVPKSPAFAL K I L E K K 0 0 0 1 0 0 2 1 0 1 1 1 0 0 1 0 0 0 0 3 0 0 11 0 1196.6653 Q643R0;Q9ULW0;B3KM90 Q643R0 466 476 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.003246 60.167 2 1.2553 0.99357 1.5817 2 Median NaN NaN NaN 0 0 Median 1.2553 0.99357 1.5817 2 0 Median 30766000 13819000 16947000 0 0 0 30766000 13819000 16947000 6453 1837 6604 17092;17093 26746;26747;26748;26749 26749 4 ILEEIDTLILPENFK KLDRRVKATIEQFMKILEEIDTLILPENFK ILEEIDTLILPENFKDSRLKRKGLVKKVQA K I L F K D 0 0 1 1 0 0 3 0 0 3 3 1 0 1 1 0 1 0 0 0 0 0 15 0 1785.9764 A0A0S2Z3K4;J3QTA2;Q99933 A0A0S2Z3K4 217 231 BAG1 BAG family molecular chaperone regulator 1 yes no 2 8.1311E-22 140.31 2 0.31179 0.32011 NaN 1 Median 0.31179 0.32011 NaN 1 0 Median NaN NaN NaN 0 0 Median 48154000 38430000 9724000 48154000 38430000 9724000 0 0 0 6454 551 6605 17094;17095 26750;26751 26751 2 ILEFIAVSQLR VLEEDHYGMEDVKKRILEFIAVSQLRGSTQ VKKRILEFIAVSQLRGSTQGKILCFYGPPG R I L L R G 1 1 0 0 0 1 1 0 0 2 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1287.7551 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;A4VCH6;K7ER27 K7EJE8 371 381 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 2.3128E-05 103.7 2 3.8726 3.86 10.872 2 Median 3.8726 3.86 10.872 2 0 Median NaN NaN NaN 0 0 Median 21018000 4317800 16700000 21018000 4317800 16700000 0 0 0 6455 946 6606 17096;17097 26752;26753 26753 2 ILEGGPILPK KLQQYKFKARELDPRILEGGPILPKKPPVK ELDPRILEGGPILPKKPPVKPPTEPIGFDL R I L P K K 0 0 0 0 0 0 1 2 0 2 2 1 0 0 2 0 0 0 0 0 0 0 10 0 1035.6328 Q643R0;Q9ULW0;B3KM90 Q643R0 411 420 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 2.3553E-05 103.56 1 2 0.75458 0.8695 NaN 1 Median 0.75458 0.8695 NaN 1 0 Median NaN NaN NaN 0 0 Median 195760000 114320000 81445000 181630000 100190000 81445000 14130000 14130000 0 6456 1837 6607 17098;17099;17100 26754;26755;26756;26757 26756 4 ILELAGNAAR APVYLEAVLEYLTAKILELAGNAARDKKTR YLTAKILELAGNAARDKKTRVTPRRLQLAI K I L A R D 3 1 1 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1026.5822 Q92646 Q92646 58 67 H2A/k Histone H2A yes yes 2 1.5297E-05 101.25 2 0.94147 1.0051 0.85855 2 Median 0.94147 1.0051 0.85855 2 0 Median NaN NaN NaN 0 0 Median 75200000 41272000 33927000 75200000 41272000 33927000 0 0 0 6457 1951 6608 17101;17102 26758;26759;26760 26760 3 ILELDQELIK NVKYELQQLEGSSDRILELDQELIKAEREL GSSDRILELDQELIKAERELSKAEKNSNVE R I L I K A 0 0 0 1 0 1 2 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1212.6966 Q92878;E7EN38;Q32P42;E7ESD9;A8K3I2 Q92878 474 483 RAD50 DNA repair protein RAD50 yes no 2 0.0030193 66.435 1 1 0.44044 0.40271 69.819 2 Median 0.64143 0.65978 NaN 1 0 Median 0.30243 0.2458 NaN 1 0 Median 13429000 8043100 5385500 10730000 6074000 4655800 2698800 1969100 729720 6458 1953 6609 17103;17104 26761;26762 26761 2 ILELDQFK NIYVLQELDNPGAKRILELDQFKGQQGQKR DNPGAKRILELDQFKGQQGQKRFQDMMGHG R I L F K G 0 0 0 1 0 1 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5542 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9 A0A024R1N4 116 123 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0046702 88.942 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40215000 0 40215000 37703000 0 37703000 2511600 0 2511600 6459 82 6610 17105;17106;17107;17108;17109 26763;26764;26765;26766;26767 26765 5 ILELSGSSSEDSEK EPACLAEIEEDKARRILELSGSSSEDSEKV RILELSGSSSEDSEKVIAGLYQRAFQHLSE R I L E K V 0 0 0 1 0 0 3 1 0 1 2 1 0 0 0 5 0 0 0 0 0 0 14 0 1479.694 P78527 P78527 3359 3372 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.3103E-29 155.15 2 3 0.73332 0.70117 51.467 5 Median 0.74692 0.84898 3.9605 2 0 Median 0.4014 0.32292 46.254 3 0 Median 318110000 195300000 122810000 286880000 172960000 113920000 31230000 22341000 8889200 6460 1665 6611 17110;17111;17112;17113;17114 26768;26769;26770;26771;26772;26773;26774;26775;26776 26770 9 ILEQEEEEEQAGKPGEPSK AAVIKMEGGTENDLRILEQEEEEEQAGKPG EEEEEQAGKPGEPSKKEEGRAGAGLGDGER R I L S K K 1 0 0 0 0 2 7 2 0 1 1 2 0 0 2 1 0 0 0 0 0 0 19 1 2126.0015 Q9BXP5 Q9BXP5 267 285 SRRT Serrate RNA effector molecule homolog yes yes 3 0.00030402 58.123 2 1 1.3112 1.1526 NaN 1 Median NaN NaN NaN 0 0 Median 1.3112 1.1526 NaN 1 0 Median 10068000 782310 9285400 8121900 0 8121900 1945900 782310 1163600 6461 2013 6612 17115;17116;17117 26777;26778;26779 26777 3 ILESITVSSLMATPQDPK PTSDEESTPKKSKARILESITVSSLMATPQ SITVSSLMATPQDPKGQGVGTGRSASKLRI R I L P K G 1 0 0 1 0 1 1 0 0 2 2 1 1 0 2 3 2 0 0 1 0 0 18 0 1929.0129 Q9NQS7;B3KPD3 Q9NQS7 227 244 INCENP Inner centromere protein yes no 2 1.4682E-12 110.38 2 2 1.302 1.277 11.478 4 Median 1.2246 1.4116 0.95631 2 0 Median 1.3807 1.1575 0.67395 2 0 Median 499550000 215110000 284440000 401600000 174660000 226940000 97949000 40446000 57503000 6462 2059 6613 17118;17119;17120;17121 26780;26781;26782;26783;26784;26785;26786 26780 1887 7 ILEVHIDK RCKSCNGRKIVREKKILEVHIDKGMKDGQK KIVREKKILEVHIDKGMKDGQKITFHGEGD K I L D K G 0 0 0 1 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 965.55458 P31689;B7Z5C0;Q9NXZ8 P31689 207 214 DNAJA1;HDJ2 DnaJ homolog subfamily A member 1 yes no 2;3 0.0091076 75.738 3 1.1878 1.3115 5.5154 3 Median 1.1878 1.3115 5.5154 3 0 Median NaN NaN NaN 0 0 Median 174300000 81672000 92623000 174300000 81672000 92623000 0 0 0 6463 1535 6614 17122;17123;17124 26787;26788;26789;26790 26789 4 ILFAQSEPLVPSAAALAR ______________________________ AQSEPLVPSAAALARMDAYALAPYAGAGPL R I L A R M 5 1 0 0 0 1 1 0 0 1 3 0 0 1 2 2 0 0 0 1 0 0 18 0 1853.0411 J3KPS2;Q6ZRV2 J3KPS2 3 20 FAM83H Protein FAM83H yes no 2 0.0033464 35.006 1 0.77659 0.79873 NaN 1 Median 0.77659 0.79873 NaN 1 0 Median NaN NaN NaN 0 0 Median 6372900 3164700 3208200 6372900 3164700 3208200 0 0 0 6464 1327 6615 17125 26791 26791 1 ILFIGGITAPTVR HIFVFQASHPLSWGRILFIGGITAPTVRQY GRILFIGGITAPTVRQYYAYLTDTQCKRVG R I L V R Q 1 1 0 0 0 0 0 2 0 3 1 0 0 1 1 0 2 0 0 1 0 0 13 0 1356.8129 Q9BSY0;A8KAH1;P48651 Q9BSY0 182 194 PTDSS1 Phosphatidylserine synthase 1 yes no 2 0.0013374 73.885 1 0.9813 0.97588 NaN 1 Median 0.9813 0.97588 NaN 1 0 Median NaN NaN NaN 0 0 Median 8178200 3832900 4345300 8178200 3832900 4345300 0 0 0 6465 793 6616 17126 26792 26792 0 ILFNVVLEAR AKRKSKKNIRKQRMKILFNVVLEAREPGSG KQRMKILFNVVLEAREPGSGRRLCDLFMVK K I L A R E 1 1 1 0 0 0 1 0 0 1 2 0 0 1 0 0 0 0 0 2 0 0 10 0 1172.6917 Q86U86;E7EVG2;H0Y5B5 Q86U86 525 534 PBRM1 Protein polybromo-1 yes no 2 0.0015298 73.233 1 1.0575 1.1166 NaN 1 Median 1.0575 1.1166 NaN 1 0 Median NaN NaN NaN 0 0 Median 4019800 1832400 2187500 4019800 1832400 2187500 0 0 0 6466 1883 6617 17127 26793;26794 26794 2 ILFRPVASQLPR ITGSKDLQNVNITLRILFRPVASQLPRIFT TLRILFRPVASQLPRIFTSIGEDYDERVLP R I L P R I 1 2 0 0 0 1 0 0 0 1 2 0 0 1 2 1 0 0 0 1 0 0 12 1 1395.8351 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 94 105 HEL-S-54e;PHB Prohibitin yes no 3 3.2299E-13 133.32 2 1 1.4508 1.7298 22.908 3 Median 1.3992 1.5961 11.371 2 0 Median 2.8039 2.3143 NaN 1 0 Median 428050000 159370000 268680000 403800000 152820000 250980000 24249000 6553000 17696000 6467 730 6618 17128;17129;17130 26795;26796;26797;26798;26799 26796 5 ILGADTSVDLEETGR QKTGTAEMSSILEERILGADTSVDLEETGR ILGADTSVDLEETGRVLSIGDGIARVHGLR R I L G R V 1 1 0 2 0 0 2 2 0 1 2 0 0 0 0 1 2 0 0 1 0 0 15 0 1574.7788 V9HW26;P25705;K7ERX7;B4DGW3;K7EK77;K7EQH4;K7EJP1;K7ESA0 V9HW26 59 73 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 3.784E-07 119.39 2 1 1.2827 1.3294 6.4923 2 Median 1.2827 1.3294 6.4923 2 0 Median NaN NaN NaN 0 0 Median 33668000 15140000 18528000 32076000 13548000 18528000 1591900 1591900 0 6468 1518 6619 17131;17132;17133 26800;26801;26802;26803;26804;26805;26806 26803 7 ILGDPEEESWSPSLTNLEK QGGRPSLIARIPVARILGDPEEESWSPSLT PEEESWSPSLTNLEKVVVTDVTSNFLTVTI R I L E K V 0 0 1 1 0 0 4 1 0 1 3 1 0 0 2 3 1 1 0 0 0 0 19 0 2143.0321 Q9HC52 Q9HC52 342 360 CBX8 Chromobox protein homolog 8 yes yes 2 0.005099 31.827 1 1.2437 1.0133 NaN 1 Median NaN NaN NaN 0 0 Median 1.2437 1.0133 NaN 1 0 Median 6717500 3163400 3554100 0 0 0 6717500 3163400 3554100 6469 2052 6620 17134 26807;26808 26808 2 ILGENEEEEDLAESGR TKGAPKNTTKSWQGRILGENEEEEDLAESG LGENEEEEDLAESGRLFVRNLPYTSTEEDL R I L G R L 1 1 1 1 0 0 6 2 0 1 2 0 0 0 0 1 0 0 0 0 0 0 16 0 1788.8014 Q9Y4C8 Q9Y4C8 388 403 RBM19 Probable RNA-binding protein 19 yes yes 2 2.0672E-08 100.93 2 2 1.0598 0.98734 6.7777 4 Median 0.94665 0.95611 0.29443 2 0 Median 1.1967 1.0594 5.7072 2 0 Median 23215000 11446000 11768000 19029000 9441300 9587700 4185500 2004900 2180600 6470 2145 6621 17135;17136;17137;17138 26809;26810;26811;26812;26813 26809 5 ILGEVINALK YEKFFAPECGRCQRKILGEVINALKQTWHV RCQRKILGEVINALKQTWHVSCFVCVACGK K I L L K Q 1 0 1 0 0 0 1 1 0 2 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1068.6543 B7Z8X5;Q59FC9;B7Z481 B7Z8X5 383 392 yes no 2 0.02173 46.129 1 2.9596 2.9023 NaN 1 Median 2.9596 2.9023 NaN 1 0 Median NaN NaN NaN 0 0 Median 20640000 4372000 16268000 20640000 4372000 16268000 0 0 0 6471 1105 6622 17139 26814 26814 1 ILGGSVLHLVLALR SGKQMNDEKTAADYKILGGSVLHLVLALRG KILGGSVLHLVLALRGGGGLRQ________ K I L L R G 1 1 0 0 0 0 0 2 1 1 5 0 0 0 0 1 0 0 0 2 0 0 14 0 1459.9239 Q15843 Q15843 61 74 NEDD8 NEDD8 yes yes 2;3 2.9938E-09 114.4 4 1 0.83839 0.82413 16.06 5 Median 0.79557 0.84136 18.396 4 0 Median 1.0086 0.82413 NaN 1 0 Median 69821000 37854000 31968000 56767000 31934000 24833000 13054000 5919400 7135000 6472 1766 6623 17140;17141;17142;17143;17144 26815;26816;26817;26818;26819;26820;26821;26822 26820 8 ILGLLDAYLK HNKQATENAKEEVRRILGLLDAYLKTRTFL EEVRRILGLLDAYLKTRTFLVGERVTLADI R I L L K T 1 0 0 1 0 0 0 1 0 1 4 1 0 0 0 0 0 0 1 0 0 0 10 0 1117.6747 Q53YD7;P26641;B4DUP0;B4DUK7 Q53YD7 138 147 EEF1G Elongation factor 1-gamma yes no 2 0.00041053 88.948 4 2 1.5817 1.4883 55.598 4 Median 2.1244 2.3232 4.0791 2 0 Median 1.113 0.89544 12.957 2 0 Median 94739000 34697000 60042000 84031000 29395000 54636000 10707000 5301900 5405400 6473 1522 6624 17145;17146;17147;17148;17149;17150 26823;26824;26825;26826;26827;26828;26829;26830;26831;26832;26833 26823 11 ILGPFHK THIVNQNFKSYAGEKILGPFHKRFSCIIGP FKSYAGEKILGPFHKRFSCIIGPNGSGKSN K I L H K R 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 7 0 810.47521 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 100 106 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein no no 2 0.040059 59.641 1 0.9091 1.0408 NaN 1 Median 0.9091 1.0408 NaN 1 0 Median NaN NaN NaN 0 0 Median 188540000 100350000 88186000 188540000 100350000 88186000 0 0 0 6474 2070;1136 6625 17151 26834 26834 1 ILGPGLNK DAFLASESLIKQIPRILGPGLNKAGKFPSL LIKQIPRILGPGLNKAGKFPSLLTHNENMV R I L N K A 0 0 1 0 0 0 0 2 0 1 2 1 0 0 1 0 0 0 0 0 0 0 8 0 810.49634 P62906;Q1JQ76;A0A024RCW3 P62906 123 130 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 0.0010041 117.56 2 2 1.0612 1.0505 17.98 4 Median 1.0327 1.2282 2.5646 2 0 Median 1.0895 0.90119 2.1351 2 0 Median 2511900000 1213600000 1298300000 2434300000 1175000000 1259200000 77630000 38616000 39014000 6475 1651 6626 17152;17153;17154;17155 26835;26836;26837;26838;26839;26840;26841;26842;26843 26836 9 ILGPQGNTIK LIPVKQYPKFNFVGKILGPQGNTIKRLQEE NFVGKILGPQGNTIKRLQEETGAKISVLGK K I L I K R 0 0 1 0 0 1 0 2 0 2 1 1 0 0 1 0 1 0 0 0 0 0 10 0 1039.6026 B4DDX2;Q07666;B4E043;B2R7B5 B4DDX2 156 165 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 2 6.2002E-05 98.582 2 1 1.422 1.6877 21.414 3 Plateau 1.4176 1.6189 8.7005 2 0 Median 1.422 1.1348 NaN 1 0 Median 287200000 109740000 177460000 277850000 106100000 171750000 9349400 3640000 5709400 6476 962 6627 17156;17157;17158 26844;26845;26846;26847;26848 26847 5 ILGSLYAASEDQEK EKVLKAYPNNYETMKILGSLYAASEDQEKR KILGSLYAASEDQEKRDIAKGHLKKVTEQY K I L E K R 2 0 0 1 0 1 2 1 0 1 2 1 0 0 0 2 0 0 1 0 0 0 14 0 1522.7515 A8K6X9;Q6PD62 A8K6X9 380 393 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 3.8852E-22 134.75 1 2 1.807 1.4293 0.80607 2 Median NaN NaN NaN 0 0 Median 1.807 1.4293 0.80607 2 0 Median 48454000 3210500 45244000 39522000 0 39522000 8932100 3210500 5721700 6477 765 6628 17159;17160;17161 26849;26850;26851;26852 26849 4 ILGVGISTGGR MCVEAAAEAVKLNCRILGVGISTGGRVNPR LNCRILGVGISTGGRVNPREGIVLHSTKLI R I L G R V 0 1 0 0 0 0 0 4 0 2 1 0 0 0 0 1 1 0 0 1 0 0 11 0 1028.5978 Q6QNY7;Q6QNY6;Q6QNY5;Q9Y223 Q6QNY7 467 477 GNE Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase yes no 2 0.0058056 55.549 2 1.2568 1.268 11.631 2 Median 1.2568 1.268 11.631 2 0 Median NaN NaN NaN 0 0 Median 14965000 6004600 8960400 14965000 6004600 8960400 0 0 0 6478 1858 6629 17162;17163 26853;26854;26855;26856 26855 4 ILHLQGEGDIVPK LNQNSSRSHSIFSIRILHLQGEGDIVPKIS IRILHLQGEGDIVPKISELSLCDLAGSERC R I L P K I 0 0 0 1 0 1 1 2 1 2 2 1 0 0 1 0 0 0 0 1 0 0 13 0 1417.7929 O95235 O95235 388 400 KIF20A Kinesin-like protein KIF20A yes yes 3 3.8744E-05 78.401 1 2 1.2792 1.0246 6.4589 3 Median 0.86757 0.97031 NaN 1 0 Median 1.3198 1.0633 5.2515 2 0 Median 132370000 67407000 64962000 85855000 47392000 38463000 46515000 20016000 26499000 6479 1421 6630 17164;17165;17166 26857;26858;26859;26860 26858 4 ILIANTGMDTDK KKIGVNQPKRIENAKILIANTGMDTDKIKI NAKILIANTGMDTDKIKIFGSRVRVDSTAK K I L D K I 1 0 1 2 0 0 0 1 0 2 1 1 1 0 0 0 2 0 0 0 0 0 12 0 1290.649 F8VQ14;F5GWF6;V9HW96;P78371 F8VQ14 237 248 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 2 0.00096118 66.435 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22769000 0 22769000 22769000 0 22769000 0 0 0 6480 1255 6631 17167;17168 26861;26862 26861 960 2 ILIENGVAER ______________________________ DNRIRILIENGVAERQRSLFVVVGDRGKDQ R I L E R Q 1 1 1 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1112.619 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 12 21 NAT10 N-acetyltransferase 10 no no 2 2.5807E-12 147.51 2 2 1.0627 1.0427 7.0051 4 Median 0.85511 0.98159 0.38545 2 0 Median 1.3282 1.1081 0.4313 2 0 Median 318400000 170610000 147790000 282340000 154000000 128340000 36058000 16613000 19446000 6481 2023;1687 6632 17169;17170;17171;17172 26863;26864;26865;26866;26867;26868;26869;26870 26864 8 ILIFNIEIPITK GPKVPIKACTRFRARILIFNIEIPITKGFP RARILIFNIEIPITKGFPVLLHYQTVSEPA R I L T K G 0 0 1 0 0 0 1 0 0 5 1 1 0 1 1 0 1 0 0 0 0 0 12 0 1412.8643 Q9NSX9;B7Z1K2;B7Z524;H0YDX7;J3QT46;D9YZV0;B3KNB9;A8K9E1;Q9Y450 Q9NSX9 98 109 DKFZp434G247;HBS1L HBS1-like protein yes no 2 0.00031231 81.865 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6482 784 6633 17173 26871 26871 1 ILIFSSR IPGPVCKGKWKNKERILIFSSRGINFRTRH GKWKNKERILIFSSRGINFRTRHLMQDLRM R I L S R G 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 2 0 0 0 0 0 0 7 0 834.49634 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 62 68 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.0099453 122.79 2 2 1.163 1.1141 2.686 4 Median 0.97992 1.1018 0.037609 2 0 Median 1.3722 1.1461 2.4745 2 0 Median 235840000 118800000 117040000 198800000 102870000 95930000 37039000 15927000 21112000 6483 1934 6634 17174;17175;17176;17177 26872;26873;26874;26875;26876;26877;26878;26879;26880;26881;26882;26883;26884 26873 13 ILIHSVSLSSSPNIMLLHR TGSEGLLKFWNFKNKILIHSVSLSSSPNIM SVSLSSSPNIMLLHRDSGILGLALDDFSIS K I L H R D 0 1 1 0 0 0 0 0 2 3 4 0 1 0 1 5 0 0 0 1 0 0 19 0 2116.1827 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 516 534 WDR36 WD repeat-containing protein 36 yes no 4 0.00010583 41.912 1 0.71573 0.61548 NaN 1 Median NaN NaN NaN 0 0 Median 0.71573 0.61548 NaN 1 0 Median 21765000 12394000 9370300 0 0 0 21765000 12394000 9370300 6484 486 6635 17178 26885 26885 332 1 ILIIGESGVGK ______________________________ TTLKILIIGESGVGKSSLLLRFTDDTFDPE K I L G K S 0 0 0 0 0 0 1 3 0 3 1 1 0 0 0 1 0 0 0 1 0 0 11 0 1084.6492 Q9NP72;B7Z4P9;Q9BZT2;Q5W0J0;A0A087X163;B7Z5V3 Q9NP72 11 21 RAB18 Ras-related protein Rab-18 yes no 2 0.0020494 62.823 1 2.5955 2.5918 NaN 1 Median 2.5955 2.5918 NaN 1 0 Median NaN NaN NaN 0 0 Median 15088000 3974800 11113000 15088000 3974800 11113000 0 0 0 6485 2055 6636 17179 26886;26887 26886 2 ILILGLDGAGK FSSIFSSLFGTREMRILILGLDGAGKTTIL REMRILILGLDGAGKTTILYRLQVGEVVTT R I L G K T 1 0 0 1 0 0 0 3 0 2 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1068.6543 F8VYN9;P40616;F8VP99;F8VP63;B4DR16 F8VYN9 20 30 ARL1 ADP-ribosylation factor-like protein 1 yes no 2 0.0026948 61.161 1 2.5988 2.6625 NaN 1 Median 2.5988 2.6625 NaN 1 0 Median NaN NaN NaN 0 0 Median 17577000 4929900 12647000 17577000 4929900 12647000 0 0 0 6486 1262 6637 17180 26888 26888 1 ILILQGLK ACEHVFIWDLRKGEKILILQGLKQEVTCLC DLRKGEKILILQGLKQEVTCLCPSPDGLHL K I L L K Q 0 0 0 0 0 1 0 1 0 2 3 1 0 0 0 0 0 0 0 0 0 0 8 0 896.60589 Q5TDG3;Q9UNX4 Q5TDG3 58 65 WDR3 WD repeat-containing protein 3 yes no 2 0.0088507 76.847 2 1 0.94549 1.0583 1.2206 3 Median 0.94098 1.057 0.1612 2 0 Median 1.3491 1.0795 NaN 1 0 Median 234540000 119610000 114940000 213050000 110700000 102350000 21490000 8907300 12583000 6487 1827 6638 17181;17182;17183 26889;26890;26891;26892;26893 26890 5 ILISLRPQELVDVIK LALMESRHDSENAERILISLRPQELVDVIK ILISLRPQELVDVIKKAYLQEEERENSEVS R I L I K K 0 1 0 1 0 1 1 0 0 3 3 1 0 0 1 1 0 0 0 2 0 0 15 1 1735.0608 Q59ES2;Q14573 Q59ES2 1686 1700 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes no 3 0.022904 40.025 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6488 1735 6639 17184 26894 26894 1 ILITTSDRPHGR TDEFASYFNKQTSPKILITTSDRPHGRTVR SPKILITTSDRPHGRTVRLCEQLSTVIPNS K I L G R T 0 2 0 1 0 0 0 1 1 2 1 0 0 0 1 1 2 0 0 0 0 0 12 1 1364.7524 Q9H9Y2 Q9H9Y2 144 155 RPF1 Ribosome production factor 1 yes yes 3;4 8.4671E-05 61.435 2 1.0095 1.1163 4.369 2 Median 1.0095 1.1163 4.369 2 0 Median NaN NaN NaN 0 0 Median 33037000 16019000 17018000 33037000 16019000 17018000 0 0 0 6489 2048 6640 17185;17186 26895;26896;26897 26896 2 ILITTVPPNLR NETGFEISSSDATVKILITTVPPNLRKLDP ATVKILITTVPPNLRKLDPELHLDIKVLQS K I L L R K 0 1 1 0 0 0 0 0 0 2 2 0 0 0 2 0 2 0 0 1 0 0 11 0 1235.7602 B4DY09;Q53FG3;F4ZW62;Q12905;F4ZW63 B4DY09 137 147 ILF2 Interleukin enhancer-binding factor 2 yes no 2 0.029206 39.305 1 0.97685 0.85967 NaN 1 Median NaN NaN NaN 0 0 Median 0.97685 0.85967 NaN 1 0 Median 1645800 595970 1049800 0 0 0 1645800 595970 1049800 6490 1049 6641 17187 26898;26899 26898 2 ILLAELEQLK ANYIDKVRFLEQQNKILLAELEQLKGQGKS EQQNKILLAELEQLKGQGKSRLGDLYEEEM K I L L K G 1 0 0 0 0 1 2 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 10 0 1168.7067 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;A0A1B0GUA0;A0A1B0GTT5 V9HWE1 130 139 HEL113;VIM Vimentin yes no 1;2 1.0257E-11 138.4 4 2 1.3494 1.5692 39.877 6 Median 1.3396 1.5814 8.0528 4 0 Linear 3.7755 3.1397 2.6312 2 0 Median 725020000 285960000 439060000 637740000 267340000 370410000 87277000 18625000 68653000 6491 1457 6642 17188;17189;17190;17191;17192;17193 26900;26901;26902;26903;26904;26905;26906;26907;26908;26909;26910;26911;26912;26913;26914;26915 26901 16 ILLAEVPTMAVEK DMVGIDAAIANAFRRILLAEVPTMAVEKVL RRILLAEVPTMAVEKVLVYNNTSIVQDEIL R I L E K V 2 0 0 0 0 0 2 0 0 1 2 1 1 0 1 0 1 0 0 2 0 0 13 0 1412.7949 Q96HT3;O15160;D6RDJ3;H0Y723;B4DEC2;E7EQB9 Q96HT3 71 83 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 0.0050527 41.689 1 1.9866 2.07 NaN 1 Median 1.9866 2.07 NaN 1 0 Median NaN NaN NaN 0 0 Median 11664000 5386200 6277900 11664000 5386200 6277900 0 0 0 6492 1376 6643 17194 26916 26916 1039 1 ILLDPNSEEVSEK EDEEEESSRQETEEKILLDPNSEEVSEKDA EKILLDPNSEEVSEKDAKQIIETAKQDVDD K I L E K D 0 0 1 1 0 0 3 0 0 1 2 1 0 0 1 2 0 0 0 1 0 0 13 0 1471.7406 P51531;A0A0U1RQZ9;F6VDE0;B4DK35 P51531 660 672 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.00036656 62.408 1 2 1.9289 1.5386 32.443 3 Median 0.882 0.911 NaN 1 0 Median 1.9912 1.5928 4.8991 2 0 Median 22638000 10909000 11728000 17240000 8895700 8344000 5398200 2013800 3384400 6493 1595 6644 17195;17196;17197 26917;26918;26919;26920;26921;26922;26923 26918 7 ILLDSGLEK EFMDAVCDGVGLGMKILLDSGLEKAKELQH VGLGMKILLDSGLEKAKELQHELFRQCTKN K I L E K A 0 0 0 1 0 0 1 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 9 0 986.56481 Q15058 Q15058 1427 1435 KIF14 Kinesin-like protein KIF14 yes yes 2 0.010039 66.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4122500 0 4122500 4122500 0 4122500 0 0 0 6494 1751 6645 17198 26924 26924 1 ILLELLNQMDGFDQNVNVK KRFDAQTGADREVQRILLELLNQMDGFDQN LLNQMDGFDQNVNVKVIMATNRADTLDPAL R I L V K V 0 0 3 2 0 2 1 1 0 1 4 1 1 1 0 0 0 0 0 2 0 0 19 0 2202.1355 A8K2M0;P43686 A8K2M0 288 306 PSMC4 26S protease regulatory subunit 6B yes no 2 0.0010182 45.28 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2634800 0 2634800 2634800 0 2634800 0 0 0 6495 710 6646 17199 26925 26925 546 1 ILLGSEQGSLQLWNVK FKISAILHPSTYLNKILLGSEQGSLQLWNV LLGSEQGSLQLWNVKSNKLLYTFPGWKVGV K I L V K S 0 0 1 0 0 2 1 2 0 1 4 1 0 0 0 2 0 1 0 1 0 0 16 0 1783.9832 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 164 179 WDR36 WD repeat-containing protein 36 yes no 2 2.7753E-35 146.16 3 2 1.2332 1.0179 8.1876 3 Median 0.82488 0.93067 NaN 1 0 Median 1.3025 1.0562 5.2257 2 0 Median 186780000 96811000 89967000 136220000 75260000 60956000 50563000 21551000 29012000 6496 486 6647 17200;17201;17202;17203;17204 26926;26927;26928;26929;26930;26931;26932;26933;26934 26926 9 ILLITEDLK DFPEDADIDLKDVDKILLITEDLKNIGNTF LKDVDKILLITEDLKNIGNTFFKSQNWEMA K I L L K N 0 0 0 1 0 0 1 0 0 2 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1056.6431 Q6FGM6;E5KN59;E5KN55;Q08752 Q6FGM6 219 227 PPID Peptidyl-prolyl cis-trans isomerase D yes no 2 0.014137 63.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10236000 0 10236000 10236000 0 10236000 0 0 0 6497 1206 6648 17205 26935 26935 1 ILLNCPYCTFNADK KSHFRNVHSEDFENRILLNCPYCTFNADKK RILLNCPYCTFNADKKTLETHIKIFHAPNA R I L D K K 1 0 2 1 2 0 0 0 0 1 2 1 0 1 1 0 1 0 1 0 0 0 14 0 1727.8011 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 105 118 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 3.9792E-06 100.93 3 2 1.3171 1.0564 40.78 3 Median 0.59524 0.61643 NaN 1 0 Median 1.5168 1.2037 18.452 2 0 Median 33818000 24389000 9428900 27620000 21578000 6042200 6197600 2810900 3386700 6498 878 6649 17206;17207;17208;17209;17210 26936;26937;26938;26939;26940;26941;26942;26943;26944;26945 26936 10 ILLQHICAK ALVDELKESIFPVVRILLQHICAKVVDKSE IFPVVRILLQHICAKVVDKSEYRTFAAQSL R I L A K V 1 0 0 0 1 1 0 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1094.627 P42695;G3V1A9;E9PKK4 P42695 355 363 NCAPD3 Condensin-2 complex subunit D3 yes no 3 0.0059725 51.193 1 0.76561 0.80519 NaN 1 Median 0.76561 0.80519 NaN 1 0 Median NaN NaN NaN 0 0 Median 19714000 11316000 8397600 19714000 11316000 8397600 0 0 0 6499 1565 6650 17211 26946 26946 1 ILLTEPPMNPTK TFGPEKLNIDTRNCKILLTEPPMNPTKNRE NCKILLTEPPMNPTKNREKIVEVMFETYQF K I L T K N 0 0 1 0 0 0 1 0 0 1 2 1 1 0 3 0 2 0 0 0 0 0 12 0 1352.7374 B4DHK9;P61160;B4DWQ5;Q8IY98;F5H6T1 B4DHK9 55 66 ACTR2 Actin-related protein 2 yes no 2 0.0020037 60.342 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14764000 0 14764000 14764000 0 14764000 0 0 0 6500 976 6651 17212;17213 26947;26948;26949 26949 781 3 ILLTLVANPYSYTDK TMEEDKETVIQFLERILLTLVANPYSYTDK ILLTLVANPYSYTDKASDFVQEASMLQATM R I L D K A 1 0 1 1 0 0 0 0 0 1 3 1 0 0 1 1 2 0 2 1 0 0 15 0 1709.924 O60287 O60287 703 717 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 2.5791E-10 108.37 1 2 1.2147 0.97609 3.1463 2 Median NaN NaN NaN 0 0 Median 1.2147 0.97609 3.1463 2 0 Median 23123000 4110700 19012000 12155000 0 12155000 10968000 4110700 6857600 6501 1392 6652 17214;17215;17216 26950;26951;26952;26953 26950 4 ILLTQENPFFR FINSRIITVSMEDVKILLTQENPFFRKLSS EDVKILLTQENPFFRKLSSETYSQAKDLAK K I L F R K 0 1 1 0 0 1 1 0 0 1 2 0 0 2 1 0 1 0 0 0 0 0 11 0 1376.7452 Q08J23 Q08J23 629 639 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 6.3604E-41 194.9 2 2 1.0407 0.98831 48.029 4 Median 1.328 1.4958 1.7973 2 0 Median 0.79553 0.65132 2.1624 2 0 Median 203490000 90829000 112660000 181830000 79360000 102470000 21659000 11469000 10190000 6502 1694 6653 17217;17218;17219;17220 26954;26955;26956;26957;26958;26959;26960;26961;26962 26954 9 ILMEHIHK SLYLKVKGNVFKNKRILMEHIHKLKADKAR NVFKNKRILMEHIHKLKADKARKKLLADQA R I L H K L 0 0 0 0 0 0 1 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 8 0 1019.5586 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8 J3QR09 134 141 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2;3 1.2489E-05 139.31 3 3 1.0614 1.0269 51.348 6 Median 1.0643 1.1889 6.9798 3 0 Median 0.53416 0.43554 44.593 3 0 Median 160010000 74343000 85669000 141640000 63327000 78314000 18371000 11016000 7354700 6503 1331 6654;6655 17221;17222;17223;17224;17225;17226 26963;26964;26965;26966;26967;26968;26969;26970;26971;26972 26966 1006 10 ILMHTFPK HVLPNSSIGILATTRILMHTFPKTDLLLDS GILATTRILMHTFPKTDLLLDSESQGSGVF R I L P K T 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 8 0 985.54191 A8K905;Q8WTT2;B4DXL4 A8K905 651 658 NOC3L Nucleolar complex protein 3 homolog yes no 3 0.014556 41.029 1 1.6844 1.721 NaN 1 Median 1.6844 1.721 NaN 1 0 Median NaN NaN NaN 0 0 Median 17300000 6512300 10788000 17300000 6512300 10788000 0 0 0 6504 780 6656 17227 26973 26973 608 1 ILMTYSVQDHMETR TSEEKLQILTALCHRILMTYSVQDHMETRQ RILMTYSVQDHMETRQQMSAELWKERLAVL R I L T R Q 0 1 0 1 0 1 1 0 1 1 1 0 2 0 0 1 2 0 1 1 0 0 14 0 1722.8069 Q9UIG0 Q9UIG0 756 769 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 0.00016903 74.853 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72071000 0 72071000 72071000 0 72071000 0 0 0 6505 2103 6657 17228;17229;17230 26974;26975;26976;26977 26977 1927;1928 4 ILMVGLDAAGK ISSLFSRLFGKKQMRILMVGLDAAGKTTIL KQMRILMVGLDAAGKTTILYKLKLGEIVTT R I L G K T 2 0 0 1 0 0 0 2 0 1 2 1 1 0 0 0 0 0 0 1 0 0 11 0 1086.6107 C9J1Z8;A4D0Z3;B4DLJ3;P84085;B4DEB9;F5H0C7;B4DJC8;F5H1V1;F5H6T5;F8WDB3;B4DN70;P18085;C9JPM4;A0A024R3Q3;A0A024R0Y6;F5H423;P84077;P61204;B4E190 P18085 20 30 ARF5;ARF3;ARF4;ARF1 ADP-ribosylation factor 5;ADP-ribosylation factor 4;ADP-ribosylation factor 1;ADP-ribosylation factor 3 no no 2 0.00086429 71.349 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58216000 0 58216000 58216000 0 58216000 0 0 0 6506 1498;660;62 6658 17231;17232 26978;26979;26980 26978 34 3 ILNDDTALK DAFPVAGQKLIYAGKILNDDTALKEYKIDE LIYAGKILNDDTALKEYKIDEKNFVVVMVT K I L L K E 1 0 1 2 0 0 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1001.5393 P54727;B4DEA3;Q53F10;B7Z4W4;Q5W0S5;B7ZA74;Q5W0S4 P54727 52 60 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.0083546 69.825 2 1.151 0.93031 1.4876 2 Median NaN NaN NaN 0 0 Median 1.151 0.93031 1.4876 2 0 Median 18260000 8853800 9406600 0 0 0 18260000 8853800 9406600 6507 1610 6659 17233;17234 26981;26982;26983;26984 26981 4 ILNDLSSDAPGVPR QKRREILSRRPSYRKILNDLSSDAPGVPRI KILNDLSSDAPGVPRIEEEKSEEETSAPAI K I L P R I 1 1 1 2 0 0 0 1 0 1 2 0 0 0 2 2 0 0 0 1 0 0 14 0 1452.7573 Q53X93;Q5U0J5;P16220;C9J4L5;B7Z7P1;C9JBT4;H7C3I0;E7EWP8;B7Z5C6;C9J896;Q4ZG78 Q53X93 123 136 CREB1 Cyclic AMP-responsive element-binding protein 1 yes no 2 0.00013888 78.653 1 1.2067 1.0329 NaN 1 Median NaN NaN NaN 0 0 Median 1.2067 1.0329 NaN 1 0 Median 5984700 2945500 3039200 0 0 0 5984700 2945500 3039200 6508 1488 6660 17235 26985 26985 1 ILNDVQDR KGLAITFVSDENDAKILNDVQDRFEVNVAE SDENDAKILNDVQDRFEVNVAELPEEIDIS K I L D R F 0 1 1 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 971.50361 A0A024RCM3;Q13838;A0A0G2JJZ9;B4DP52;H0Y400;O00148;B4DX78;Q69YT6 O00148 398 405 hCG_2005638;DDX39B;DDX39A;DKFZp547B159 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 0.010755 71.501 1 1.2841 1.3984 NaN 1 Median 1.2841 1.3984 NaN 1 0 Median NaN NaN NaN 0 0 Median 51154000 26191000 24964000 51154000 26191000 24964000 0 0 0 6509 1359;362 6661 17236 26986 26986 1 ILNFLMHPK LDLERSGVNSELVKRILNFLMHPKPSGKPL SELVKRILNFLMHPKPSGKPLPKSKKTCSK R I L P K P 0 0 1 0 0 0 0 0 1 1 2 1 1 1 1 0 0 0 0 0 0 0 9 0 1111.6212 P35659;B4DFG0;D6RDA2;H0Y8X0 P35659 179 187 DEK Protein DEK yes no 2;3 0.00018266 100.19 4 0.787 0.85399 13.545 4 Median 0.787 0.85399 13.545 4 0 Median NaN NaN NaN 0 0 Median 191200000 108550000 82651000 191200000 108550000 82651000 0 0 0 6510 1546 6662 17237;17238;17239;17240 26987;26988;26989;26990;26991;26992 26988 1303 6 ILNHFDVQLPESMEDDGLSER NISTGVSKIRLLTIRILNHFDVQLPESMED VQLPESMEDDGLSERQSVFAILRQAELVPA R I L E R Q 0 1 1 3 0 1 3 1 1 1 3 0 1 1 1 2 0 0 0 1 0 0 21 0 2443.1326 O75691 O75691 652 672 UTP20 Small subunit processome component 20 homolog yes yes 3 1.4746E-05 42.904 1 1.7856 2.0351 NaN 1 Median 1.7856 2.0351 NaN 1 0 Median NaN NaN NaN 0 0 Median 49666000 18739000 30927000 49666000 18739000 30927000 0 0 0 6511 1412 6663 17241 26993 26993 1104 1 ILNHSVDK FYRYGIKPEWMMIHRILNHSVDKKGHVHYL EWMMIHRILNHSVDKKGHVHYLIKWRDLPY R I L D K K 0 0 1 1 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 924.50288 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 620 627 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 0.001623 107.29 3 0.76755 0.79825 7.745 3 Median 0.76755 0.79825 7.745 3 0 Median NaN NaN NaN 0 0 Median 89378000 48187000 41191000 89378000 48187000 41191000 0 0 0 6512 515 6664 17242;17243;17244 26994;26995;26996;26997 26996 4 ILNIFGVIK KNVKLTVSNVLKEIKILNIFGVIKGFVEPD VLKEIKILNIFGVIKGFVEPDHYVVVGAQR K I L I K G 0 0 1 0 0 0 0 1 0 3 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1015.643 A8K6Q8;P02786;G3V0E5;B7Z2I6 A8K6Q8 386 394 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.0027201 73.616 1 0.87897 0.91717 NaN 1 Median 0.87897 0.91717 NaN 1 0 Median NaN NaN NaN 0 0 Median 3991300 2043700 1947700 3991300 2043700 1947700 0 0 0 6513 761 6665 17245 26998;26999 26999 2 ILNLLSPSDGER EQMGDHKMAMDGYRRILNLLSPSDGERFMQ YRRILNLLSPSDGERFMQLARDMAKSYYEA R I L E R F 0 1 1 1 0 0 1 1 0 1 3 0 0 0 1 2 0 0 0 0 0 0 12 0 1312.6987 Q9Y5Q9 Q9Y5Q9 277 288 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 5.2668E-13 118.4 2 2 1.9654 1.6451 37.418 3 Median 0.9621 0.96537 NaN 1 0 Median 2.1115 1.8076 13.321 2 0 Median 36093000 10601000 25492000 27966000 8239400 19726000 8126800 2361600 5765100 6514 2150 6666 17246;17247;17248;17249 27000;27001;27002;27003;27004;27005 27002 6 ILNMDFETEVDK NLRALKYLVMDEADRILNMDFETEVDKILK ADRILNMDFETEVDKILKVNPRDRKTFLFS R I L D K I 0 0 1 2 0 0 2 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 12 0 1452.6806 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9 Q53GJ1 172 183 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 2.5326E-08 113.63 2 4 1.4863 1.7093 17.821 4 Linear 1.4863 1.6326 6.3471 2 0 Median 1.5767 1.2485 13.882 2 0 Median 96066000 39090000 56977000 88004000 35520000 52483000 8062800 3569600 4493200 6515 313 6667;6668 17250;17251;17252;17253;17254;17255 27006;27007;27008;27009;27010;27011;27012;27013;27014;27015 27009 227 10 ILNNSGLPITSAIDLEDAAK LVVRLEGTNVQEAQKILNNSGLPITSAIDL GLPITSAIDLEDAAKKAVASVAKK______ K I L A K K 3 0 2 2 0 0 1 1 0 3 3 1 0 0 1 2 1 0 0 0 0 0 20 0 2054.0895 A0A024R325;Q96I99;Q3ZCW5;H0Y852;Q9Y436 A0A024R325 404 423 SUCLG2;DKFZp586M2023 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 3.0863E-06 62.287 2 3.1988 3.257 0.36677 2 Median 3.1988 3.257 0.36677 2 0 Median NaN NaN NaN 0 0 Median 26881000 6474200 20407000 26881000 6474200 20407000 0 0 0 6516 126 6669 17256;17257 27016;27017;27018 27017 3 ILNPEEIEK KNIELAVMRRDQSLKILNPEEIEKYVAEIE RDQSLKILNPEEIEKYVAEIEKKKKK____ K I L E K Y 0 0 1 0 0 0 3 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 9 0 1083.5812 Q05DH1;A0A0K0K1K4;O14818;H0Y586 Q05DH1 219 227 PSMA7 Proteasome subunit alpha type;Proteasome subunit alpha type-7 yes no 2 0.0066178 66.504 1 1.7948 1.8099 NaN 1 Median 1.7948 1.8099 NaN 1 0 Median NaN NaN NaN 0 0 Median 16226000 4459700 11766000 16226000 4459700 11766000 0 0 0 6517 539 6670 17258 27019 27019 1 ILPEAHQR MAQAASAAVTRGDLRILPEAHQRTWHAWMD VTRGDLRILPEAHQRTWHAWMDNIREWCIS R I L Q R T 1 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 8 0 962.52976 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 700 707 VARS Valine--tRNA ligase yes no 3 0.00072702 100.45 2 0.93708 0.95224 14.936 2 Median 0.93708 0.95224 14.936 2 0 Median NaN NaN NaN 0 0 Median 29714000 16233000 13480000 29714000 16233000 13480000 0 0 0 6518 363 6671 17259;17260 27020;27021 27021 2 ILPEIIPILEEGLR AARTLGDLVRKLGEKILPEIIPILEEGLRS KILPEIIPILEEGLRSQKSDERQGVCIGLS K I L L R S 0 1 0 0 0 0 3 1 0 4 3 0 0 0 2 0 0 0 0 0 0 0 14 0 1603.9549 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1960 1973 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 1.1946E-09 120.96 1 1.8091 1.8813 NaN 1 Median 1.8091 1.8813 NaN 1 0 Median NaN NaN NaN 0 0 Median 13508000 5626300 7882000 13508000 5626300 7882000 0 0 0 6519 1205 6672 17261 27022 27022 1 ILPQDVILK LKEIVKAAKAPVKARILPQDVILKFRDKIE APVKARILPQDVILKFRDKIEKMEKDVYAV R I L L K F 0 0 0 1 0 1 0 0 0 2 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1037.6485 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 559 567 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.00096668 91.853 2 0.80607 0.8957 1.6343 2 Median 0.80607 0.8957 1.6343 2 0 Median NaN NaN NaN 0 0 Median 134820000 72345000 62475000 134820000 72345000 62475000 0 0 0 6520 899;1099 6673 17262;17263 27023;27024;27025;27026;27027 27025 5 ILPTLEAVAALGNK MTTGHNVADLVVILKILPTLEAVAALGNKV KILPTLEAVAALGNKVVESLRAQDPSEVLT K I L N K V 3 0 1 0 0 0 1 1 0 1 3 1 0 0 1 0 1 0 0 1 0 0 14 0 1408.829 B4DY09;Q53FG3;F4ZW62;Q12905;F4ZW63;X6R6Z1 B4DY09 90 103 ILF2 Interleukin enhancer-binding factor 2 yes no 2 5.8075E-05 91.855 2 2 1.23 1.2442 32.539 4 Linear 1.2013 1.1967 2.7858 2 0 Median 0.8602 0.68207 2.8929 2 0 Median 59752000 27697000 32055000 51569000 23393000 28176000 8183100 4304500 3878600 6521 1049 6674 17264;17265;17266;17267 27028;27029;27030;27031;27032;27033 27031 6 ILPVETDK WELIKTDPELKLTDKILPVETDKKPQGKQL ELKLTDKILPVETDKKPQGKQLQTRADYLL K I L D K K 0 0 0 1 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 8 0 913.51205 A0A024RC75;O14647 A0A024RC75 1296 1303 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.012634 67.169 2 0.73252 0.73261 1.874 2 Median 0.73252 0.73261 1.874 2 0 Median NaN NaN NaN 0 0 Median 54201000 29473000 24728000 54201000 29473000 24728000 0 0 0 6522 354 6675 17268;17269 27034;27035 27035 2 ILPVFDEPPNPTNVEESLK GVDQEHFSNVVKGEKILPVFDEPPNPTNVE FDEPPNPTNVEESLKRTKENDAHLVEVNLN K I L L K R 0 0 2 1 0 0 3 0 0 1 2 1 0 1 4 1 1 0 0 2 0 0 19 0 2137.0943 Q5HYL6;Q9NYL9;H0YKU1;H0YNJ8 Q5HYL6 173 191 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 2 0.00058769 38.178 1 1.6116 1.7267 NaN 1 Median 1.6116 1.7267 NaN 1 0 Median NaN NaN NaN 0 0 Median 21267000 8086400 13181000 21267000 8086400 13181000 0 0 0 6523 1808 6676 17270 27036;27037;27038 27038 3 ILPVGGIK RQNLAMTGEVSLTGKILPVGGIKEKTIAAK EVSLTGKILPVGGIKEKTIAAKRAGVTCIV K I L I K E 0 0 0 0 0 0 0 2 0 2 1 1 0 0 1 0 0 0 0 1 0 0 8 0 795.52182 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ERR6 K7EJE8 759 766 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.012813 73.039 2 4.8596 5.2473 NaN 1 Median 4.8596 5.2473 NaN 1 0 Median NaN NaN NaN 0 0 Median 36328000 5297800 31030000 36328000 5297800 31030000 0 0 0 6524 946 6677 17271;17272 27039;27040 27039 2 ILQAVNFPFLVK VVKLKQIEHTLNEKRILQAVNFPFLVKLEF EKRILQAVNFPFLVKLEFSFKDNSNLYMVM R I L V K L 1 0 1 0 0 1 0 0 0 1 2 1 0 2 1 0 0 0 0 2 0 0 12 0 1387.8228 Q15136;B7Z708;K7ERP6;A8K8B9;A0A024R7J0;P17612 Q15136 78 89 KIN27;PRKACA cAMP-dependent protein kinase catalytic subunit alpha yes no 2 0.0052029 62.582 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3228000 0 3228000 3228000 0 3228000 0 0 0 6525 227 6678 17273;17274 27041;27042 27042 2 ILQDGGLQVVEK RKVLISDSLDPCCRKILQDGGLQVVEKQNL CRKILQDGGLQVVEKQNLSKEELIAELQDC K I L E K Q 0 0 0 1 0 2 1 2 0 1 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1297.7242 O43175 O43175 22 33 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 0.00012263 94.465 2 2 2.4443 2.3118 43.552 4 Median 3.0239 3.3462 1.6758 2 0 Median 1.9518 1.5754 3.6138 2 0 Median 143680000 34158000 109520000 131290000 30062000 101230000 12391000 4095500 8295300 6526 1382 6679 17275;17276;17277;17278 27043;27044;27045;27046;27047;27048;27049 27043 7 ILQDIASGSHPFSQVLK VDLTYTYDHLGDSPKILQDIASGSHPFSQV QDIASGSHPFSQVLKEAKKPMVVLGSSALQ K I L L K E 1 0 0 1 0 2 0 1 1 2 2 1 0 1 1 3 0 0 0 1 0 0 17 0 1838.989 B4DJ81;E5KRK5;P28331 B4DJ81 335 351 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 3 0.0024809 45.723 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9311600 0 9311600 9311600 0 9311600 0 0 0 6527 986 6680 17279 27050 27050 1 ILQDSLGGR ERTPHVPYRESKLTRILQDSLGGRTRTSII ESKLTRILQDSLGGRTRTSIIATISPASLN R I L G R T 0 1 0 1 0 1 0 2 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 957.52434 P52732;B2RAM6 P52732 319 327 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.00065244 96.253 2 2.8732 3.0512 3.6316 2 Median 2.8732 3.0512 3.6316 2 0 Median NaN NaN NaN 0 0 Median 44611000 12985000 31626000 44611000 12985000 31626000 0 0 0 6528 1602 6681 17280;17281 27051;27052;27053 27051 3 ILQEDPTNTAAR EAMERYDDAIQLYDRILQEDPTNTAARKRK YDRILQEDPTNTAARKRKIAIRKAQGKNVG R I L A R K 2 1 1 1 0 1 1 0 0 1 1 0 0 0 1 0 2 0 0 0 0 0 12 0 1327.6732 Q53HG5;A8K4K9;Q15006;H0YAS9 Q53HG5 113 124 EMC2 ER membrane protein complex subunit 2 yes no 2 0.0075566 52.579 2 1 0.63392 0.59203 29.614 2 Median 0.72017 0.72993 NaN 1 0 Median 0.55799 0.48018 NaN 1 0 Median 25717000 11754000 13963000 23990000 11032000 12958000 1727200 722210 1005000 6529 736 6682 17282;17283;17284 27054;27055;27056 27055 3 ILQEGVDPK YTTRCLAPMMSEVIRILQEGVDPKKLDSLT MSEVIRILQEGVDPKKLDSLTTSFGFPVGA R I L P K K 0 0 0 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 9 0 997.54441 E9KL44;P40939;B4DRH6;B4DDZ5;H0YFD6 E9KL44 561 569 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.013178 56.81 1 1.2391 1.2559 NaN 1 Median 1.2391 1.2559 NaN 1 0 Median NaN NaN NaN 0 0 Median 29414000 15200000 14214000 29414000 15200000 14214000 0 0 0 6530 1228 6683 17285 27057 27057 1 ILQELPSVSQETLK DRSLPALKIREELLKILQELPSVSQETLKH KILQELPSVSQETLKHSGIGRAVMYLYKHP K I L L K H 0 0 0 0 0 2 2 0 0 1 3 1 0 0 1 2 1 0 0 1 0 0 14 0 1583.877 A0A1B0GW95;B4DGM5;B4DL52;Q96ST2 A0A1B0GW95 29 42 IWS1 Protein IWS1 homolog yes no 2 1.7394E-09 106.29 2 0.71033 0.72107 NaN 1 Median 0.71033 0.72107 NaN 1 0 Median NaN NaN NaN 0 0 Median 38296000 11290000 27006000 38296000 11290000 27006000 0 0 0 6531 634 6684 17286;17287 27058;27059 27058 2 ILQGGVGIPHIR KARHPQLLYESKLYKILQGGVGIPHIRWYG LYKILQGGVGIPHIRWYGQEKDYNVLVMDL K I L I R W 0 1 0 0 0 1 0 3 1 3 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1258.751 V9HW00;P48729;Q05DL3;Q6PJ06;E5RG27;D6RGE5 V9HW00 66 77 HEL-S-77p;CSNK1A1 Casein kinase I isoform alpha yes no 3 0.0035405 45.661 1 1.1367 1.1397 NaN 1 Median 1.1367 1.1397 NaN 1 0 Median NaN NaN NaN 0 0 Median 17902000 8197100 9705300 17902000 8197100 9705300 0 0 0 6532 1577 6685 17288 27060;27061 27060 2 ILQIITELIK RKKLENPKMSLENDKILQIITELIKTENNN LENDKILQIITELIKTENNN__________ K I L I K T 0 0 0 0 0 1 1 0 0 4 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1182.7588 A0A087WYN9;Q7Z478 A0A087WYN9 1356 1365 DHX29 ATP-dependent RNA helicase DHX29 yes no 2 0.00052681 70.919 2 1.2884 1.4221 NaN 1 Median 1.2884 1.4221 NaN 1 0 Median NaN NaN NaN 0 0 Median 2600100 1304500 1295600 2600100 1304500 1295600 0 0 0 6533 435 6686 17289;17290 27062;27063 27062 2 ILQLQEK VVIHRFVCEGTVEEKILQLQEKKKDLAKQV CEGTVEEKILQLQEKKKDLAKQVLSGSGES K I L E K K 0 0 0 0 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 870.51747 A0A024R0F1;Q9UNY4;X6RI15 A0A024R0F1 1126 1132 TTF2 Transcription termination factor 2 yes no 2 0.016891 97.602 1 0.71786 0.77653 NaN 1 Median 0.71786 0.77653 NaN 1 0 Median NaN NaN NaN 0 0 Median 35821000 20727000 15094000 35821000 20727000 15094000 0 0 0 6534 44 6687 17291 27064 27064 1 ILQLVATGAVR YGRLNLHYAVVSKRKILQLVATGAVRDWDD SKRKILQLVATGAVRDWDDPRLFTLTALRR K I L V R D 2 1 0 0 0 1 0 1 0 1 2 0 0 0 0 0 1 0 0 2 0 0 11 0 1139.7026 Q53HS0;P47897;A8K3A8;Q96AW5;B4DNN3;A0A1B0GVU9;H7C0R3;Q9H3A5;Q9BUZ3;B4DDN1;A0A1B0GTT3;A0A0U1RQQ5 Q53HS0 499 509 QARS Glutamine--tRNA ligase yes no 2 0.00034577 85.731 2 1 1.3804 1.4252 42.49 3 Plateau 1.3644 1.3961 2.919 2 0 Median 0.77052 0.66936 NaN 1 0 Median 46407000 19027000 27380000 44163000 17849000 26314000 2244300 1178000 1066300 6535 1575 6688 17292;17293;17294 27065;27066;27067 27066 3 ILQVSFK AMAIASLNGYRLGDKILQVSFKTNKSHK__ NGYRLGDKILQVSFKTNKSHK_________ K I L F K T 0 0 0 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 7 0 833.50109 Q15717 Q15717 314 320 ELAVL1 ELAV-like protein 1 yes yes 2 0.020094 94.407 2 1.4666 1.4653 5.5611 2 Median 1.4666 1.4653 5.5611 2 0 Median NaN NaN NaN 0 0 Median 49419000 20998000 28421000 49419000 20998000 28421000 0 0 0 6536 1764 6689 17295;17296 27068;27069;27070 27070 3 ILSDIGLEYCK NNLGSLRKARKTVKKILSDIGLEYCKEHIE TVKKILSDIGLEYCKEHIEDFKQFEPNDFY K I L C K E 0 0 0 1 1 0 1 1 0 2 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1309.6588 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 22 32 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00010563 96.89 1 2 1.8691 1.4825 36.488 3 Median 0.76144 0.822 NaN 1 0 Median 1.9476 1.541 5.4716 2 0 Median 46640000 26269000 20371000 38258000 23468000 14790000 8382400 2801300 5581100 6537 878 6690 17297;17298;17299 27071;27072;27073 27071 3 ILSFIQDQEEDYLK YLSMLEDTGFWLESKILSFIQDQEEDYLKL KILSFIQDQEEDYLKLHRVIYQQIIQTYLT K I L L K L 0 0 0 2 0 2 2 0 0 2 2 1 0 1 0 1 0 0 1 0 0 0 14 0 1739.8618 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 858 871 NCAPG2 Condensin-2 complex subunit G2 yes no 2 1.4794E-16 137.89 2 2 1.3027 1.2214 21.658 4 Median 0.94567 1.0393 0.30396 2 0 Median 1.8646 1.5029 6.8014 2 0 Median 137840000 66100000 71745000 96231000 51353000 44878000 41613000 14747000 26866000 6538 1887 6691 17300;17301;17302;17303 27074;27075;27076;27077;27078;27079;27080;27081;27082 27075 9 ILSGVVTK DKKCPFTGNVSIRGRILSGVVTKMKMQRTI NVSIRGRILSGVVTKMKMQRTIVIRRDYLH R I L T K M 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 2 0 0 8 0 815.51165 P62280;M0QZC5 P62280 72 79 RPS11 40S ribosomal protein S11 yes no 2 0.0031191 97.798 2 1 1.0164 1.1702 13.636 3 Plateau 0.94889 1.1281 8.9319 2 0 Median 1.0557 0.91505 NaN 1 0 Median 2526300000 1267600000 1258700000 2401100000 1209500000 1191600000 125150000 58134000 67019000 6539 1641 6692 17304;17305;17306 27083;27084;27085;27086;27087 27086 5 ILSHLQQDSLK VLMEKPDVVVGTPSRILSHLQQDSLKLRDS TPSRILSHLQQDSLKLRDSLELLVVDEADL R I L L K L 0 0 0 1 0 2 0 0 1 1 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1280.7089 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 145 155 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2;3 4.3414E-05 88.056 5 2 1.0073 1.0295 7.9647 5 Median 0.96966 1.0952 11.184 3 0 Plateau 1.2328 1.025 1.8208 2 0 Median 194740000 92003000 102740000 191240000 90460000 100780000 3501200 1543000 1958200 6540 2081 6693 17307;17308;17309;17310;17311;17312;17313 27088;27089;27090;27091;27092;27093;27094;27095 27093 8 ILSHNPETQQVDIEILSSLPALR TSSYSPDVSDYKEGRILSHNPETQQVDIEI QQVDIEILSSLPALREPGKFDLVYHNENGA R I L L R E 1 1 1 1 0 2 2 0 1 3 4 0 0 0 2 3 1 0 0 1 0 0 23 0 2572.3861 P38432 P38432 500 522 COIL Coilin yes yes 3 0.00048935 32.752 1 1 0.9266 0.86283 15.764 2 Median 0.7635 0.77182 NaN 1 0 Median 1.1245 0.96457 NaN 1 0 Median 16007000 8423600 7583900 9784900 5818200 3966700 6222600 2605400 3617200 6541 1552 6694 17314;17315 27096;27097 27096 2 ILSLLEGQK SPDYERIINLRHFKRILSLLEGQKIAFGGE LRHFKRILSLLEGQKIAFGGETDEATRYIA R I L Q K I 0 0 0 0 0 1 1 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 9 0 999.59645 J3QRD1;Q59H65;P51648;Q68D64;J3QS00;I3L1M4 J3QRD1 291 299 ALDH3A2;DKFZp686E23276 Fatty aldehyde dehydrogenase yes no 2 0.043105 48.794 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6542 1338 6695 17316 27098 27098 1 ILSQQPVETEEVNK HVTKEGVWKNPVLLKILSQQPVETEEVNKL KILSQQPVETEEVNKLIAQEGPSFLQMRIK K I L N K L 0 0 1 0 0 2 3 0 0 1 1 1 0 0 1 1 1 0 0 2 0 0 14 0 1612.8308 Q13129 Q13129 192 205 RLF Zinc finger protein Rlf yes yes 2 1.1878E-05 98.898 3 1 0.65961 0.71427 52.779 3 Median 0.58168 0.61324 21.567 2 0 Median 1.8279 1.4713 NaN 1 0 Median 53577000 34781000 18796000 50565000 33824000 16741000 3012100 956990 2055100 6543 1705 6696 17317;17318;17319;17320 27099;27100;27101;27102;27103 27102 5 ILSQSTDSLNMR IAGHFNDESPLGLRRILSQSTDSLNMRNRT LRRILSQSTDSLNMRNRTLSVESLIDEEVI R I L M R N 0 1 1 1 0 1 0 0 0 1 2 0 1 0 0 3 1 0 0 0 0 0 12 0 1363.6766 D3DVA5;V9GYM8;Q92974;V9GYF5;V9GYG5;V9GZ14;B4DJ49;B7Z977 D3DVA5 215 226 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 2 0.019202 43.512 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6544 1197 6697 17321 27104 27104 912 1 ILSVQGTEPLVLFK LDKVFKATLSAEVYRILSVQGTEPLVLFKE RILSVQGTEPLVLFKEGAVRGLEALLADPQ R I L F K E 0 0 0 0 0 1 1 1 0 1 3 1 0 1 1 1 1 0 0 2 0 0 14 0 1542.9021 Q9H8H0;J3QLQ6 Q9H8H0 112 125 NOL11 Nucleolar protein 11 yes no 2 1.0252E-46 183 2 2 1.1252 1.1162 4.9176 4 Median 0.93303 1.0628 6.5406 2 0 Median 1.3116 1.1222 0.37216 2 0 Median 493820000 231730000 262090000 307170000 152130000 155040000 186650000 79601000 107050000 6545 2042 6698 17322;17323;17324;17325 27105;27106;27107;27108;27109;27110;27111;27112 27106 8 ILSYNR QLKELTAPDENIPAKILSYNRANRAVAILC APDENIPAKILSYNRANRAVAILCNHQRAP K I L N R A 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 6 0 764.41809 P11387;B9EG90;Q9BVT2;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;B4E061 P11387 616 621 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.034509 113.82 1 2 1.4312 1.2935 2.9126 3 Median 1.0974 1.301 NaN 1 0 Median 1.4565 1.2633 3.3455 2 0 Median 695850000 327540000 368300000 561510000 272190000 289320000 134340000 55353000 78986000 6546 1470 6699 17326;17327;17328 27113;27114;27115 27113 3 ILTATVDNANILLQIDNAR DYSQYYRTIEELQNKILTATVDNANILLQI TVDNANILLQIDNARLAADDFRTKFETEQA K I L A R L 3 1 3 2 0 1 0 0 0 3 3 0 0 0 0 0 2 0 0 1 0 0 19 0 2067.1324 CON__Q04695;Q04695;F5GWP8;K7EPJ9;B4E2P9 CON__Q04695 145 163 KRT17 Keratin, type I cytoskeletal 17 yes no 2 0.0020589 35.303 2 0.69645 0.60374 3.4481 2 Median NaN NaN NaN 0 0 Median 0.69645 0.60374 3.4481 2 0 Median 9229700 5621600 3608100 0 0 0 9229700 5621600 3608100 + 6547 1168 6700 17329;17330 27116;27117 27117 2 ILTATVDNANVLLQIDNAR DYSPYFKTIEDLRNKILTATVDNANVLLQI TVDNANVLLQIDNARLAADDFRTKYETELN K I L A R L 3 1 3 2 0 1 0 0 0 2 3 0 0 0 0 0 2 0 0 2 0 0 19 0 2053.1168 CON__P02533;P02533 CON__P02533 176 194 KRT14 Keratin, type I cytoskeletal 14 yes no 2 1.6315E-17 113.25 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 126400000 126400000 0 81924000 81924000 0 44477000 44477000 0 + 6548 1150 6701 17331;17332;17333;17334 27118;27119;27120;27121 27121 4 ILTDEMLLQACEGR ESCSDDDNQGSKSPKILTDEMLLQACEGRT KILTDEMLLQACEGRTAHKAARLGITMKAK K I L G R T 1 1 0 1 1 1 2 1 0 1 3 0 1 0 0 0 1 0 0 0 0 0 14 0 1647.796 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 142 155 GPATCH4 G patch domain-containing protein 4 yes no 2 9.0787E-10 118.48 2 4 1.3118 1.2013 14.64 4 Median 1.1368 1.1434 3.1826 2 0 Median 1.6232 1.3849 16.3 2 0 Median 43492000 18866000 24626000 34625000 14557000 20069000 8866600 4309400 4557100 6549 1820 6702;6703 17335;17336;17337;17338;17339;17340 27122;27123;27124;27125;27126;27127;27128;27129 27125 1678 8 ILTDYGFEGHPFR DMFGVFFANHPDLRRILTDYGFEGHPFRKD RRILTDYGFEGHPFRKDFPLSGYVELRYDD R I L F R K 0 1 0 1 0 0 1 2 1 1 1 0 0 2 1 0 1 0 1 0 0 0 13 0 1550.7518 Q9UF24;O75489 Q9UF24 113 125 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 3 0.0063045 25.53 1 1.7511 1.7634 NaN 1 Median 1.7511 1.7634 NaN 1 0 Median NaN NaN NaN 0 0 Median 7814200 3142800 4671400 7814200 3142800 4671400 0 0 0 6550 1406 6704 17341 27130 27130 1 ILTFDQLALDSPK VTSRARSRILRAGGKILTFDQLALDSPKGC GKILTFDQLALDSPKGCGTVLLSGPRKGRE K I L P K G 1 0 0 2 0 1 0 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 13 0 1459.7922 G3V203;A0A024QZD1;J3QQ67;Q07020;Q0QEW2;H0YHA7;F8VUA6 G3V203 120 132 RPL18 60S ribosomal protein L18 yes no 2 1.6149E-23 154.24 5 2 0.91822 0.94287 18.877 4 Median 0.9261 1.1042 1.0862 2 0 Median 0.91822 0.79717 2.4838 2 0 Median 2535000000 1298100000 1236900000 2168100000 1105700000 1062300000 366910000 192340000 174570000 6551 16 6705 17342;17343;17344;17345;17346;17347;17348 27131;27132;27133;27134;27135;27136;27137;27138;27139;27140;27141;27142;27143;27144;27145;27146;27147;27148;27149;27150;27151;27152;27153;27154;27155;27156 27148 26 ILTGTDAPK MSDLPVKVIHVESGKILTGTDAPKAGQLEA HVESGKILTGTDAPKAGQLEAWLEMNPGYE K I L P K A 1 0 0 1 0 0 0 1 0 1 1 1 0 0 1 0 2 0 0 0 0 0 9 0 914.5073 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6 A7E2E1 627 635 SMARCA4 Transcription activator BRG1 yes no 2 0.035569 43.808 1 1.971 1.5895 NaN 1 Median NaN NaN NaN 0 0 Median 1.971 1.5895 NaN 1 0 Median 4296400 1317600 2978700 0 0 0 4296400 1317600 2978700 6552 695 6706 17349 27157 27157 1 ILTIEVK KRLNPDGKSIRNEDKILTIEVKKGWKEGTK KSIRNEDKILTIEVKKGWKEGTKITFPKEG K I L V K K 0 0 0 0 0 0 1 0 0 2 1 1 0 0 0 0 1 0 0 1 0 0 7 0 814.51641 Q6FI51;Q6FHS4;P25685;M0R080;M0QYT3;M0QXK0 Q6FI51 203 209 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 0.02938 74.415 2 1.6866 1.7034 NaN 1 Median 1.6866 1.7034 NaN 1 0 Median NaN NaN NaN 0 0 Median 8344500 3106700 5237800 8344500 3106700 5237800 0 0 0 6553 1517 6707 17350;17351 27158;27159 27158 2 ILTPIIFK RDRMIQVYFPKEGRKILTPIIFKEENLRFE FPKEGRKILTPIIFKEENLRFEPDSTEYIK K I L F K E 0 0 0 0 0 0 0 0 0 3 1 1 0 1 1 0 1 0 0 0 0 0 8 0 943.61064 H7C5L9;G5E9W7;G5E9V5;P82650;Q59GX8;Q8NBL6 H7C5L9 51 58 MRPS22 28S ribosomal protein S22, mitochondrial yes no 2 0.014589 62.659 1 1.1807 1.2328 NaN 1 Median 1.1807 1.2328 NaN 1 0 Median NaN NaN NaN 0 0 Median 19229000 9325800 9903500 19229000 9325800 9903500 0 0 0 6554 1277 6708 17352 27160 27160 1 ILTTIEDLDQK DLMKKKRIVENDKSKILTTIEDLDQKKNQA DKSKILTTIEDLDQKKNQALNIAWQKVNKD K I L Q K K 0 0 0 2 0 1 1 0 0 2 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1287.6922 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 1015 1025 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 2.7141E-12 138.66 2 2 1.2034 1.1834 23.957 4 Median 0.82462 0.96438 0.58259 2 0 Median 1.7464 1.46 1.3337 2 0 Median 725320000 367210000 358110000 633060000 334260000 298800000 92262000 32945000 59316000 6555 69 6709 17353;17354;17355;17356 27161;27162;27163;27164;27165;27166 27163 6 ILTTIEDLDQKK DLMKKKRIVENDKSKILTTIEDLDQKKNQA KSKILTTIEDLDQKKNQALNIAWQKVNKDF K I L K K N 0 0 0 2 0 1 1 0 0 2 2 2 0 0 0 0 2 0 0 0 0 0 12 1 1415.7872 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 1015 1026 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 0.0037132 66.19 1 2 1.8716 1.5963 11.489 3 Median 1.2202 1.3981 NaN 1 0 Median 1.9513 1.675 6.8044 2 0 Median 43347000 16669000 26677000 20041000 8677300 11364000 23305000 7992200 15313000 6556 69 6710 17357;17358;17359 27167;27168;27169 27168 3 ILTTNTWSSELSK QALCAVYEHWVPREKILTTNTWSSELSKLA EKILTTNTWSSELSKLAANAFLAQRISSIN K I L S K L 0 0 1 0 0 0 1 0 0 1 2 1 0 0 0 3 3 1 0 0 0 0 13 0 1478.7617 O60701;Q9NQ81 O60701 208 220 UGDH;GDH UDP-glucose 6-dehydrogenase yes no 2 0.015825 50.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6557 1397 6711 17360 27170 27170 1 ILVATNLFGR ERLSRYQQFKDFQRRILVATNLFGRGMDIE DFQRRILVATNLFGRGMDIERVNIVFNYDM R I L G R G 1 1 1 0 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 1 0 0 10 0 1102.6499 A0A024RCM3;Q13838;A0A0G2JJZ9;Q5STU3;B4DP52;A0A140T9X3;H0Y400;O00148;B4DX78;Q69YT6 O00148 339 348 hCG_2005638;DDX39B;DDX39A;DKFZp547B159 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 0.00030431 90.657 2 2 1.4712 1.692 53.502 3 Median 1.4852 1.7003 0.69761 2 0 Median 0.80359 0.67313 NaN 1 0 Median 297480000 129510000 167970000 280040000 116710000 163330000 17442000 12803000 4639200 6558 1359;362 6712 17361;17362;17363;17364 27171;27172;27173;27174;27175;27176 27174 6 ILVELATFLEK ELNTGKGEGVAYRGRILVELATFLEKTPPD YRGRILVELATFLEKTPPDKKLEPISNDDL R I L E K T 1 0 0 0 0 0 2 0 0 1 3 1 0 1 0 0 1 0 0 1 0 0 11 0 1274.7486 Q9NZM1 Q9NZM1 537 547 MYOF Myoferlin yes yes 2 0.0065062 63.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6559 2088 6713 17365 27177 27177 1 ILYNPLQGQK GSSLKRLPVFGMEPRILYNPLQGQKCIVQT GMEPRILYNPLQGQKCIVQTTSWSQCSKTC R I L Q K C 0 0 1 0 0 2 0 1 0 1 2 1 0 0 1 0 0 0 1 0 0 0 10 0 1172.6554 B4DI61;Q6FI18;O00622;Q53FA4 B4DI61 195 204 CYR61 Protein CYR61 yes no 2 8.7194E-05 97.798 2 2 1.2004 0.96191 8.7435 2 Median NaN NaN NaN 0 0 Median 1.2004 0.96191 8.7435 2 0 Median 127570000 10824000 116750000 103870000 0 103870000 23702000 10824000 12878000 6560 979 6714 17366;17367;17368;17369 27178;27179;27180;27181 27178 4 ILYSQCGDVMR FKEAFQLFDRTGDGKILYSQCGDVMRALGQ GDGKILYSQCGDVMRALGQNPTNAEVLKVL K I L M R A 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 1 0 0 1 1 0 0 11 0 1340.6217 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;F8VPF3;F8W1I5;A0A024RB31;B4E368;P14649 F8W1R7 27 37 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 2 1.568E-06 111.46 2 1.9164 2.0202 19.414 2 Median 1.9164 2.0202 19.414 2 0 Median NaN NaN NaN 0 0 Median 47875000 14724000 33151000 47875000 14724000 33151000 0 0 0 6561 1101 6715 17370;17371 27182;27183;27184;27185 27182 844 4 IMADNPSWDGEK ESPQLSPQDVTTHAKIMADNPSWDGEKTII HAKIMADNPSWDGEKTIIITCSFTPGSCTL K I M E K T 1 0 1 2 0 0 1 1 0 1 0 1 1 0 1 1 0 1 0 0 0 0 12 0 1361.5922 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2199 2210 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0001208 73.781 3 0.87086 0.87325 0.21533 2 Median 0.87086 0.87325 0.21533 2 0 Median NaN NaN NaN 0 0 Median 23576000 12298000 11278000 23576000 12298000 11278000 0 0 0 6562 1854 6716 17372;17373;17374 27186;27187;27188;27189 27189 1713 4 IMAQIER AVFWERCNELQDIEKIMAQIERGEARIQRR NELQDIEKIMAQIERGEARIQRRISIKKAL K I M E R G 1 1 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 7 0 859.45857 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 900 906 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.013122 87.284 2 3.2671 3.5677 NaN 1 Median 3.2671 3.5677 NaN 1 0 Median NaN NaN NaN 0 0 Median 71418000 9692900 61725000 71418000 9692900 61725000 0 0 0 6563 1391 6717 17375;17376 27190;27191;27192 27191 1064 3 IMATPEQVGK LPFADDKRKMPFTEKIMATPEQVGKMKAIV PFTEKIMATPEQVGKMKAIVEKLRFTYRSD K I M G K M 1 0 0 0 0 1 1 1 0 1 0 1 1 0 1 0 1 0 0 1 0 0 10 0 1072.5587 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 452 461 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 0.00056747 75.043 1 1 0.42215 0.40037 56.888 2 Median 0.52026 0.59864 NaN 1 0 Median 0.34254 0.26777 NaN 1 0 Median 180050000 116470000 63585000 176230000 113690000 62534000 3826900 2775700 1051200 6564 82 6718;6719 17377;17378 27193;27194 27193 79 2 IMDPNIVGSEHYDVAR LGIYPAVDPLDSTSRIMDPNIVGSEHYDVA MDPNIVGSEHYDVARGVQ____________ R I M A R G 1 1 1 2 0 0 1 1 1 2 0 0 1 0 1 1 0 0 1 2 0 0 16 0 1814.8621 H0YH81;Q0QEN7;V9HW31;P06576 H0YH81 344 359 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 3 0.012398 47.64 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8107500 0 8107500 8107500 0 8107500 0 0 0 6565 1292 6720 17379 27195 27195 986 1 IMEAIELYR FTGKKTIETVKAAERIMEAIELYREETAKM VKAAERIMEAIELYREETAKMKEHKAICKA R I M Y R E 1 1 0 0 0 0 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 0 9 0 1136.59 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 760 768 WDR3 WD repeat-containing protein 3 yes no 2 0.0013533 78.516 3 1.1237 1.1355 NaN 1 Median 1.1237 1.1355 NaN 1 0 Median NaN NaN NaN 0 0 Median 15412000 7595500 7816600 15412000 7595500 7816600 0 0 0 6566 1827 6721 17380;17381;17382 27196;27197;27198 27198 1685 3 IMEFTTTLLNTSPEGWK EGERYNYSKCTVVVRIMEFTTTLLNTSPEG EFTTTLLNTSPEGWKLLKKDLCNTHLMRVL R I M W K L 0 0 1 0 0 0 2 1 0 1 2 1 1 1 1 1 4 1 0 0 0 0 17 0 1966.971 P78527 P78527 1341 1357 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.0648E-05 83.314 2 0.94032 0.94662 7.8865 2 Median 0.94032 0.94662 7.8865 2 0 Median NaN NaN NaN 0 0 Median 18807000 9517100 9289700 18807000 9517100 9289700 0 0 0 6567 1665 6722 17383;17384 27199;27200;27201;27202 27199 1450 4 IMEGPAFNFLDAPAVR GGWPQFGVGAEICARIMEGPAFNFLDAPAV MEGPAFNFLDAPAVRVTGADVPMPYAKILE R I M V R V 3 1 1 1 0 0 1 1 0 1 1 0 1 2 2 0 0 0 0 1 0 0 16 0 1746.8763 P11177 P11177 309 324 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 2 4.6961E-09 96.64 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5179300 0 5179300 5179300 0 5179300 0 0 0 6568 1468 6723 17385 27203 27203 1182 1 IMENSGIQMVSK EKCLYEVGRDDNSKKIMENSGIQMVSKNGN SKKIMENSGIQMVSKNGNLQLHTDKGSFLK K I M S K N 0 0 1 0 0 1 1 1 0 2 0 1 2 0 0 2 0 0 0 1 0 0 12 0 1335.6527 Q96QE3;H0UIC2;A0A075B754 Q96QE3 446 457 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.0017322 55.401 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1883800 0 1883800 1883800 0 1883800 0 0 0 6569 1984 6724 17386;17387 27204;27205 27204 1817;1818 2 IMFVLPR I M P R 0 1 0 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 7 0 874.50988 REV__Q969S9 yes no 2 0.048728 48.242 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 6570 2159 6725 17388 27206 27206 2004 1 IMGGASANEMLLSGR FGQSPDGCSTVMFPKIMGGASANEMLLSGR IMGGASANEMLLSGRKLTAQEACGKGLVSQ K I M G R K 2 1 1 0 0 0 1 3 0 1 2 0 2 0 0 2 0 0 0 0 0 0 15 0 1505.733 Q9Y232 Q9Y232 493 507 CDYL Chromodomain Y-like protein yes yes 2 7.8667E-05 73.273 4 2.0513 2.2437 NaN 1 Median 2.0513 2.2437 NaN 1 0 Median NaN NaN NaN 0 0 Median 39453000 18141000 21312000 39453000 18141000 21312000 0 0 0 6571 2121 6726 17389;17390;17391;17392 27207;27208;27209;27210 27207 1948;1949 4 IMGIPEEEQMGLLR QQDKDMFQETMEAMRIMGIPEEEQMGLLRV RIMGIPEEEQMGLLRVISGVLQLGNIVFKK R I M L R V 0 1 0 0 0 1 3 2 0 2 2 0 2 0 1 0 0 0 0 0 0 0 14 0 1614.8109 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 328 341 MYH9 Myosin-9 yes no 2 0.0010749 57.532 1 4.1932 4.2895 NaN 1 Median 4.1932 4.2895 NaN 1 0 Median NaN NaN NaN 0 0 Median 34316000 6434600 27881000 34316000 6434600 27881000 0 0 0 6572 81 6727 17393 27211 27211 59;60 1 IMGPNYTPGK GRVFSGLVSTGLKVRIMGPNYTPGKKEDLY GLKVRIMGPNYTPGKKEDLYLKPIQRTILM R I M G K K 0 0 1 0 0 0 0 2 0 1 0 1 1 0 2 0 1 0 1 0 0 0 10 0 1076.5325 P13639;Q8TA90;Q6PK56 P13639 429 438 EEF2 Elongation factor 2 yes no 2 0.0026731 60.045 2 4.1744 4.5146 NaN 1 Median 4.1744 4.5146 NaN 1 0 Median NaN NaN NaN 0 0 Median 34984000 6905400 28079000 34984000 6905400 28079000 0 0 0 6573 1478 6728 17394;17395 27212;27213;27214;27215 27215 1229 4 IMGVLTHLDSFK TFEFLNICQVHGFPKIMGVLTHLDSFKHNK FPKIMGVLTHLDSFKHNKQLKKTKKRLKHR K I M F K H 0 0 0 1 0 0 0 1 1 1 2 1 1 1 0 1 1 0 0 1 0 0 12 0 1359.7221 Q14692 Q14692 179 190 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.00042479 68.515 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6574 1742 6729 17396 27216 27216 1588 1 IMIMTDQDQDGSHIK NYEDEDSLKTLRYGKIMIMTDQDQDGSHIK IMIMTDQDQDGSHIKGLLINFIHHNWPSLL K I M I K G 0 0 0 3 0 2 0 1 1 3 0 1 2 0 0 1 1 0 0 0 0 0 15 0 1730.7968 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 536 550 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2;3 6.253E-39 169.4 6 6 1.4779 2.8208 51.851 12 Linear 1.6495 1.8789 7.3897 6 0 Median 1.1575 0.93026 37.77 6 0 Median 676650000 265040000 411610000 611070000 230480000 380590000 65584000 34567000 31017000 6575 1471;1679 6730;6731;6732 17397;17398;17399;17400;17401;17402;17403;17404;17405;17406;17407;17408 27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234;27235;27236 27226 1200;1201 20 IMIPLK NVYYTVPLVRHMESRIMIPLKISPLQ____ PLVRHMESRIMIPLKISPLQ__________ R I M L K I 0 0 0 0 0 0 0 0 0 2 1 1 1 0 1 0 0 0 0 0 0 0 6 0 713.45097 B4DQI7;A8K4I8;Q9BPW8;O75323 B4DQI7 254 259 NIPSNAP1;GBAS Protein NipSnap homolog 1;Protein NipSnap homolog 2 yes no 2 0.025536 55.457 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3445900 0 3445900 3445900 0 3445900 0 0 0 6576 735 6733 17409 27237 27237 572 1 IMLFTNEDNPHGNDSAK ANLFSDVQFKMSHKRIMLFTNEDNPHGNDS LFTNEDNPHGNDSAKASRARTKAGDLRDTG R I M A K A 1 0 3 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 17 0 1901.8578 A0A024R1N4;P12956;B1AHC9;B4DE32;B4E356 A0A024R1N4 166 182 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 3.2193E-13 117.4 3 4 0.40744 0.33769 58.532 6 Median 0.6257 0.70517 0.32906 2 0 Median 0.3473 0.27841 37.776 4 0 Median 285030000 175340000 109690000 264400000 159510000 104890000 20622000 15830000 4792700 6577 82 6734;6735 17410;17411;17412;17413;17414;17415;17416 27238;27239;27240;27241;27242;27243;27244;27245;27246;27247;27248;27249;27250 27238 80 13 IMLPGVLR VMKDSAVNAICYGAKIMLPGVLRYEDGIEV AICYGAKIMLPGVLRYEDGIEVNQEIVVIT K I M L R Y 0 1 0 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 0 1 0 0 8 0 897.54699 O60832;H7C2Q2 O60832 315 322 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.010656 57.463 1 0.87521 0.9275 NaN 1 Median 0.87521 0.9275 NaN 1 0 Median NaN NaN NaN 0 0 Median 23801000 13075000 10726000 23801000 13075000 10726000 0 0 0 6578 1398 6736 17417 27251;27252 27251 1074 2 IMLPWDPTGK RHVLLRQGVLGIKVKIMLPWDPTGKIGPKK GIKVKIMLPWDPTGKIGPKKPLPDHVSIVE K I M G K I 0 0 0 1 0 0 0 1 0 1 1 1 1 0 2 0 1 1 0 0 0 0 10 0 1156.5951 P23396;Q53G83;E9PL09;E9PPU1;H0YEU2;Q9NQS8;E9PSF4 P23396 188 197 RPS3 40S ribosomal protein S3 yes no 2 0.035164 40.724 2 1.0921 0.90203 13.085 2 Median NaN NaN NaN 0 0 Median 1.0921 0.90203 13.085 2 0 Median 4022800 1746900 2275800 0 0 0 4022800 1746900 2275800 6579 1511 6737 17418;17419 27253;27254;27255 27253 3 IMNTFSVMPSPK GTLLISKIREEYPDRIMNTFSVMPSPKVSD PDRIMNTFSVMPSPKVSDTVVEPYNATLSV R I M P K V 0 0 1 0 0 0 0 0 0 1 0 1 2 1 2 2 1 0 0 1 0 0 12 0 1350.6676 Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2;A5D907;A5D906;A1L195;A1L196;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386;K7ES63 Q13885 163 174 TUBB2A;TUBB2B;DKFZp566F223;TUBB6 Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain no no 2 0.0031885 52.391 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2812800 0 2812800 2812800 0 2812800 0 0 0 6580 1723;2004 6738 17420 27256 27256 1558;1559 1 IMNTFSVVPSPK GTLLISKIREEYPDRIMNTFSVVPSPKVSD PDRIMNTFSVVPSPKVSDTVVEPYNATLSV R I M P K V 0 0 1 0 0 0 0 0 0 1 0 1 1 1 2 2 1 0 0 2 0 0 12 0 1318.6955 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q1KSF8;G3V2A3;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;M0R2D3;M0R042;M0QYM7;P04350;B4DE77;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3 Q5JP53 145 156 TUBB;XTP3TPATP1;TUBB3;TUBB2C;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2 3.0323E-13 133.81 4 4 1.5008 1.2302 54.656 7 Median 2.1333 2.5102 54.278 3 0 Median 1.1347 0.92159 36.005 4 0 Median 761030000 253240000 507790000 719540000 233770000 485770000 41490000 19472000 22018000 6581 1452;1660;1441;502;1353 6739;6740 17421;17422;17423;17424;17425;17426;17427;17428 27257;27258;27259;27260;27261;27262;27263;27264;27265;27266;27267;27268;27269;27270;27271;27272;27273;27274 27259 348 18 IMPEDIIINCSK RGRGNHPKMGMLKRRIMPEDIIINCSKDAK KRRIMPEDIIINCSKDAKVPSPPPGHKWKE R I M S K D 0 0 1 1 1 0 1 0 0 4 0 1 1 0 1 1 0 0 0 0 0 0 12 0 1431.7102 P11387;B9EG90 P11387 377 388 TOP1 DNA topoisomerase 1 yes no 2 0.0001725 72.2 6 1.483 1.1659 28.147 4 Median NaN NaN NaN 0 0 Median 1.483 1.1659 28.147 4 0 Median 74210000 26459000 47751000 0 0 0 74210000 26459000 47751000 6582 1470 6741;6742 17429;17430;17431;17432;17433;17434 27275;27276;27277;27278;27279;27280;27281;27282;27283;27284 27278 1187 10 IMRPTDVPDQGLLCDLLWSDPDK GGLSPDLQSMEQIRRIMRPTDVPDQGLLCD DQGLLCDLLWSDPDKDVQGWGENDRGVSFT R I M D K D 0 1 0 5 1 1 0 1 0 1 4 1 1 0 3 1 1 1 0 1 0 0 23 1 2683.2986 P62136;A0A140VJS9;B3KXM2;E9PMD7;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;B4DNE3 P62136 189 211 PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 3 3.1164E-09 67.413 2 1.4677 1.636 12.692 2 Median 1.4677 1.636 12.692 2 0 Median NaN NaN NaN 0 0 Median 35159000 13491000 21667000 35159000 13491000 21667000 0 0 0 6583 1632;343 6743 17435;17436 27285;27286;27287 27287 256 3 IMSSPLSK NRKRHFNAPSHIRRKIMSSPLSKELRQKYN PSHIRRKIMSSPLSKELRQKYNVRSMPIRK K I M S K E 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 3 0 0 0 0 0 0 8 0 861.46299 Q6IBH6;P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KTJ8;J3KSS0;E5RIT6;Q9UNX3;E5RHH1 Q6IBH6 29 36 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 no no 2 0.00044875 125.58 2 1.3117 1.4908 4.194 2 Median 1.3117 1.4908 4.194 2 0 Median NaN NaN NaN 0 0 Median 301090000 125730000 175360000 301090000 125730000 175360000 0 0 0 6584 1629;1214 6744 17437;17438 27288;27289;27290;27291 27290 927 4 IMVANIEEVLQR RNLGSINTELQDVQRIMVANIEEVLQRGEA VQRIMVANIEEVLQRGEALSALDSKANNLS R I M Q R G 1 1 1 0 0 1 2 0 0 2 1 0 1 0 0 0 0 0 0 2 0 0 12 0 1413.765 O75396;A0A087X1A9 O75396 148 159 SEC22B Vesicle-trafficking protein SEC22b yes no 2 0.00037345 66.056 2 2.419 2.4353 NaN 1 Median 2.419 2.4353 NaN 1 0 Median NaN NaN NaN 0 0 Median 16144000 2359300 13785000 16144000 2359300 13785000 0 0 0 6585 1403 6745 17439;17440 27292;27293 27293 1081 2 INAVVETGR KQEDFMTTMDANEEKINAVVETGRRLVSDG DANEEKINAVVETGRRLVSDGNINSDRIQE K I N G R R 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 9 0 957.52434 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1139 1147 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0068692 66.692 3 1.4367 1.4713 0.74201 2 Median 1.4367 1.4713 0.74201 2 0 Median NaN NaN NaN 0 0 Median 31008000 14975000 16034000 31008000 14975000 16034000 0 0 0 6586 415 6746 17441;17442;17443 27294;27295;27296 27296 3 INAVVETGRR KQEDFMTTMDANEEKINAVVETGRRLVSDG ANEEKINAVVETGRRLVSDGNINSDRIQEK K I N R R L 1 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 10 1 1113.6255 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1139 1148 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.013165 35.908 1 2.5481 2.5028 NaN 1 Median 2.5481 2.5028 NaN 1 0 Median NaN NaN NaN 0 0 Median 4487600 983610 3504000 4487600 983610 3504000 0 0 0 6587 415 6747 17444 27297 27297 1 INDALSCEYECR LKMDLNSEQAEQLERINDALSCEYECRRRM LERINDALSCEYECRRRMLMKRLDVTVQSF R I N C R R 1 1 1 1 2 0 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1528.6286 Q52LJ0 Q52LJ0 210 221 FAM98B Protein FAM98B yes yes 2 0.00014175 93.345 2 1.11 1.1197 10.273 2 Median 1.11 1.1197 10.273 2 0 Median NaN NaN NaN 0 0 Median 26900000 11569000 15331000 26900000 11569000 15331000 0 0 0 6588 1782 6748 17445;17446 27298;27299;27300;27301 27301 4 INDRFEFPEQLPLDEFLQK LMRFMYDPQTDQNIKINDRFEFPEQLPLDE FEFPEQLPLDEFLQKTDPKDPANYILHAVL K I N Q K T 0 1 1 2 0 2 3 0 0 1 3 1 0 3 2 0 0 0 0 0 0 0 19 1 2377.1954 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q93009 421 439 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 1.7229E-05 52.185 2 0.728 0.80007 8.4542 2 Median 0.728 0.80007 8.4542 2 0 Median NaN NaN NaN 0 0 Median 23531000 13816000 9715300 23531000 13816000 9715300 0 0 0 6589 1954 6749 17447;17448 27302;27303;27304 27304 3 INEAIVAVQAIIADPK LRLLHIEELRELQTKINEAIVAVQAIIADP NEAIVAVQAIIADPKTDHRLGKVGR_____ K I N P K T 4 0 1 1 0 1 1 0 0 4 0 1 0 0 1 0 0 0 0 2 0 0 16 0 1663.9509 Q5RLJ0;Q549M8;Q9Y224 Q5RLJ0 219 234 C14orf166 UPF0568 protein C14orf166 yes no 2 5.1429E-05 83.499 2 1 1.2674 1.1583 4.4671 3 Median 1.1872 1.1963 5.7432 2 0 Median 1.4656 1.1583 NaN 1 0 Median 50263000 23367000 26896000 45094000 21267000 23827000 5169600 2099800 3069800 6590 1793 6750 17449;17450;17451 27305;27306;27307;27308;27309 27308 4 INEAVECLLSLK EVVRKLKAEKSPKAKINEAVECLLSLKAQY KAKINEAVECLLSLKAQYKEKTGKEYIPGQ K I N L K A 1 0 1 0 1 0 2 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 12 0 1387.7381 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 850 861 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 2.1842E-13 125.74 2 2 1.1849 0.94611 13.276 2 Median NaN NaN NaN 0 0 Median 1.1849 0.94611 13.276 2 0 Median 20095000 2291100 17804000 15296000 0 15296000 4799400 2291100 2508300 6591 1454 6751 17452;17453;17454;17455 27310;27311;27312;27313;27314;27315 27311 6 INEEISVK ASYGVRRGRVCFEMKINEEISVKHLPSTEP RVCFEMKINEEISVKHLPSTEPDPHVVRIG K I N V K H 0 0 1 0 0 0 2 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 8 0 930.50221 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0;M0QYZ0;M0QYM5;M0QYI8 M0R3F1 112 119 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 0.0083865 80.165 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35518000 0 35518000 35518000 0 35518000 0 0 0 6592 49 6752 17456;17457 27316;27317 27316 2 INEILSNALK MENMGRFGSGMNMGRINEILSNALKRGEII MNMGRINEILSNALKRGEIIAKQGGGGGGG R I N L K R 1 0 2 0 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1113.6394 P52272;A0A087X0X3;Q59ES8;Q7KYM9;M0R019;B4DEG4 P52272 372 381 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 2 4.984E-12 144.66 2 2 1.1913 1.1407 36.363 4 Median 1.3688 1.538 2.4803 2 0 Median 1.0184 0.82242 6.4805 2 0 Median 206940000 87079000 119860000 188210000 78515000 109700000 18731000 8563800 10168000 6593 1599 6753 17458;17459;17460;17461 27318;27319;27320;27321;27322;27323;27324;27325 27318 8 INELIQGNMQR IIPKKKAATDDDLHRINELIQGNMQRCKLV DLHRINELIQGNMQRCKLVMDQISEARDSM R I N Q R C 0 1 2 0 0 2 1 1 0 2 1 0 1 0 0 0 0 0 0 0 0 0 11 0 1314.6714 B3KRT9;H7BXF5;Q9H0E3 B3KRT9 628 638 SAP130 Histone deacetylase complex subunit SAP130 yes no 2 0.0037458 56.563 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6267300 6267300 0 6267300 6267300 0 0 0 0 6594 934 6754 17462;17463 27326;27327 27327 761 2 INELPTEETEIMIVQAK IVLMAEALEKLFLQKINELPTEETEIMIVQ ELPTEETEIMIVQAKGRGRGRKETGTAKPG K I N A K G 1 0 1 0 0 1 4 0 0 3 1 1 1 0 1 0 2 0 0 1 0 0 17 0 1957.0078 O60885;A0A024R7H8;Q6PIS5;Q6NXE4;Q05BM2;Q5BJ26;M0QZD9 O60885 161 177 BRD4 Bromodomain-containing protein 4 yes no 2 0.00070199 40.767 1 0.85272 0.86003 NaN 1 Median 0.85272 0.86003 NaN 1 0 Median NaN NaN NaN 0 0 Median 7777900 4005200 3772700 7777900 4005200 3772700 0 0 0 6595 1399 6755 17464 27328 27328 1076 1 INELTGIK QIKQVEDDIQQLLKKINELTGIKESDTGLA IQQLLKKINELTGIKESDTGLAPPALWDLA K I N I K E 0 0 1 0 0 0 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 8 0 886.51238 A0A140VK70;P35998;Q75L23;C9JLS9;B7Z571 A0A140VK70 59 66 PSMC2 26S protease regulatory subunit 7 yes no 2 0.0028899 98.523 1 2.3683 2.5088 NaN 1 Median 2.3683 2.5088 NaN 1 0 Median NaN NaN NaN 0 0 Median 35828000 7755000 28073000 35828000 7755000 28073000 0 0 0 6596 620 6756 17465 27329;27330 27329 2 INEWLTLVEK EVMFKTPVSITEHPKINEWLTLVEKEMRVT TEHPKINEWLTLVEKEMRVTLAKLLAESVT K I N E K E 0 0 1 0 0 0 2 0 0 1 2 1 0 0 0 0 1 1 0 1 0 0 10 0 1243.6812 Q14204 Q14204 1698 1707 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.020051 54.608 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2714900 0 2714900 2714900 0 2714900 0 0 0 6597 1729 6757 17466 27331;27332 27332 2 INFDDNAEFR FGETPEGQVVCFDAKINFDDNAEFRQKDIF CFDAKINFDDNAEFRQKDIFAMDDKSENEP K I N F R Q 1 1 2 2 0 0 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 10 0 1239.552 A0A024R325;Q96I99;Q3ZCW5;E9PDQ8;B7Z2D5 A0A024R325 260 269 SUCLG2 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.0034635 76.465 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4319700 0 4319700 4319700 0 4319700 0 0 0 6598 126 6758 17467 27333 27333 1 INFLSNNQCENIR PLSVLCCNLPEAKRRINFLSNNQCENIRRL RRINFLSNNQCENIRRLPSFRRYVEKQASE R I N I R R 0 1 4 0 1 1 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 13 0 1620.7678 B4E014;Q9UBD5;B7Z8A5;B7ZAI3;Q6IBJ0;B4DZ51 B4E014 293 305 ORC3;ORC3L Origin recognition complex subunit 3 yes no 2 0.0030136 65.5 1 1 1.3986 1.1761 NaN 1 Median NaN NaN NaN 0 0 Median 1.3986 1.1761 NaN 1 0 Median 3090600 1517900 1572700 0 0 0 3090600 1517900 1572700 6599 1058 6759 17468;17469 27334;27335 27334 2 INFYCPGSALGR KNISMSVEGDYTYLRINFYCPGSALGRNEG YLRINFYCPGSALGRNEGNIFPNPEATFVK R I N G R N 1 1 1 0 1 0 0 2 0 1 1 0 0 1 1 1 0 0 1 0 0 0 12 0 1353.65 Q9Y5B9 Q9Y5B9 570 581 SUPT16H FACT complex subunit SPT16 yes yes 2 1.0473E-17 139.43 2 2 0.8088 0.80246 0.71381 4 Median 0.70503 0.80246 0.0063867 2 0 Median 0.9434 0.80607 1.1519 2 0 Median 335640000 200370000 135270000 284590000 173990000 110600000 51050000 26387000 24663000 6600 2148 6760 17470;17471;17472;17473 27336;27337;27338;27339;27340;27341;27342;27343 27337 8 INGGGGGSVPGIER MENMGRFGSGMNMGRINGGGGGSVPGIERM RINGGGGGSVPGIERMGPGIDRLGGAGMER R I N E R M 0 1 1 0 0 0 1 6 0 2 0 0 0 0 1 1 0 0 0 1 0 0 14 0 1268.6473 M0QZM1 M0QZM1 158 171 HNRNPM yes yes 2 0.00065816 77.593 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17065000 0 17065000 17065000 0 17065000 0 0 0 6601 1354 6761 17474;17475 27344;27345 27345 2 INISEGNCPER KGESVKKMREESGARINISEGNCPERIITL SGARINISEGNCPERIITLAGPTNAIFKAF R I N E R I 0 1 2 0 1 0 2 1 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1287.5877 Q53SS8;Q15365;F8VTZ0;H3BRU6;F8VZX2;B4DRD7;F8W0G4;F8VXH9;F8W1G6;J3QT27;Q5MJP6;E9PFP8;P57721;Q15366;B4DLC0 Q15366 28 38 PCBP1;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2 no no 2 2.4004E-08 121.6 2 2 2.1263 2.5319 31.497 4 Linear 2.0227 2.2923 4.6412 2 0 Median 1.5583 1.3315 1.877 2 0 Median 318970000 110390000 208580000 266850000 90150000 176700000 52115000 20238000 31877000 6602 1263;1760;1759 6762 17476;17477;17478;17479 27346;27347;27348;27349;27350;27351;27352 27349 7 INISQVIAVVGQQNVEGK NNFKSMVVSGAKGSKINISQVIAVVGQQNV SQVIAVVGQQNVEGKRIPFGFKHRTLPHFI K I N G K R 1 0 2 0 0 3 1 2 0 3 0 1 0 0 0 1 0 0 0 4 0 0 18 0 1895.0476 P24928;A0A087WWE2 P24928 779 796 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 2 1.4953E-11 101.3 2 1 0.76668 0.71954 16.012 3 Median 0.74207 0.76871 9.3479 2 0 Median 0.76668 0.59712 NaN 1 0 Median 26777000 14778000 11999000 23044000 12832000 10212000 3732900 1946300 1786500 6603 1514 6763 17480;17481;17482 27353;27354;27355;27356;27357 27354 5 INLELR ______________________________ ______________________________ K I N L R N 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 6 0 756.44939 Q53F20;Q9BTT0;E9PPH5;Q5TB19;B4E0D5;E9PLC4;E9PI45;Q5TB25 Q53F20 7 12 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 0.00013093 146.66 2 2.5013 2.8731 NaN 1 Median 2.5013 2.8731 NaN 1 0 Median NaN NaN NaN 0 0 Median 162790000 60949000 101840000 162790000 60949000 101840000 0 0 0 6604 1784 6764 17483;17484 27358;27359 27359 2 INLGGSQAAGYLQR LPILEGRLDAKNCKRINLGGSQAAGYLQRL RINLGGSQAAGYLQRLLQLKYPGHLAAITL R I N Q R L 2 1 1 0 0 2 0 3 0 1 2 0 0 0 0 1 0 0 1 0 0 0 14 0 1446.7579 Q9H9F9 Q9H9F9 211 224 ACTR5 Actin-related protein 5 yes yes 2 0.00015275 76.302 2 3 0.91655 0.84064 27.215 2 Median 0.69729 0.69348 NaN 1 0 Median 1.2048 1.019 NaN 1 0 Median 29059000 18508000 10551000 22682000 15210000 7472400 6376700 3298500 3078200 6605 2045 6765 17485;17486;17487;17488;17489 27360;27361;27362;27363;27364;27365;27366 27361 7 INLIAPPR LRAGLNCSTENMPIKINLIAPPRYVMTTTT TENMPIKINLIAPPRYVMTTTTLERTEGLS K I N P R Y 1 1 1 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 8 0 892.54944 Q53XC0;P05198;H0YJS4;G3V4T5 Q53XC0 227 234 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.009492 74.415 2 2 1.0916 1.0565 51.005 4 Median 1.53 1.6115 1.8231 2 0 Median 0.76205 0.66808 6.9213 2 0 Median 63568000 28666000 34902000 59409000 26377000 33032000 4158800 2288500 1870400 6606 1445 6766 17490;17491;17492;17493 27367;27368;27369;27370;27371;27372;27373 27370 7 INLPQK IPAGTILGLTVGDPRINLPQKKSNALPNPE LGLTVGDPRINLPQKKSNALPNPEKCQDNE R I N Q K K 0 0 1 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 6 0 711.42792 Q96F88;Q99575 Q96F88 514 519 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.040098 107.73 1 0.36866 0.39623 NaN 1 Median 0.36866 0.39623 NaN 1 0 Median NaN NaN NaN 0 0 Median 37513000 27728000 9784800 37513000 27728000 9784800 0 0 0 6607 1965 6767 17494 27374 27374 1 INNAAFEAVVVTNTIPQEDK AILTHGIFSGPAISRINNAAFEAVVVTNTI FEAVVVTNTIPQEDKMKHCTKIQVIDISMI R I N D K M 3 0 3 1 0 1 2 0 0 2 0 1 0 1 1 0 2 0 0 3 0 0 20 0 2172.1063 A0A140VK41;P11908;B2R860;H7C540 A0A140VK41 264 283 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 2 7.415E-14 101.3 2 2.7447 2.7826 NaN 1 Median 2.7447 2.7826 NaN 1 0 Median NaN NaN NaN 0 0 Median 16573000 2225700 14347000 16573000 2225700 14347000 0 0 0 6608 616 6768 17495;17496 27375;27376 27376 2 INPDNYGMDLNSDDSTDDEAHPR TSYQMTPQGHRAPPKINPDNYGMDLNSDDS DLNSDDSTDDEAHPRKPIPTWARGTPLSQA K I N P R K 1 1 3 6 0 0 1 1 1 1 1 0 1 0 2 2 1 0 1 0 0 0 23 0 2590.0514 Q9NQS7 Q9NQS7 817 839 INCENP Inner centromere protein yes yes 3 1.05E-12 94.707 2 2.0289 2.0518 10.311 2 Median 2.0289 2.0518 10.311 2 0 Median NaN NaN NaN 0 0 Median 35949000 13237000 22712000 35949000 13237000 22712000 0 0 0 6609 2059 6769 17497;17498 27377;27378;27379 27379 1888 3 INPICNDHYR RSPRGLSHSPWAVKKINPICNDHYRSVYQK WAVKKINPICNDHYRSVYQKRLMDEAKILK K I N Y R S 0 1 2 1 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 0 10 0 1300.5983 V9HWH0;Q96KB5;E5RFX4 V9HWH0 66 75 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 3 0.00085319 59.542 1 1.8337 1.8389 NaN 1 Median 1.8337 1.8389 NaN 1 0 Median NaN NaN NaN 0 0 Median 17733000 6501400 11232000 17733000 6501400 11232000 0 0 0 6610 1975 6770 17499 27380 27380 1 INPYMSSPCHIEMILTEK KAPKMRRRTYRAHGRINPYMSSPCHIEMIL YMSSPCHIEMILTEKEQIVPKPEEEVAQKK R I N E K E 0 0 1 0 1 0 2 0 1 3 1 1 2 0 2 2 1 0 1 0 0 0 18 0 2162.021 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8 A0A087WXM6 136 153 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 3 1.0722E-05 69.979 2 2 1.3656 1.5633 41.613 3 Plateau 1.3761 1.5629 0.043499 2 0 Median 0.96517 0.76015 NaN 1 0 Median 297100000 126990000 170110000 288070000 120560000 167510000 9029400 6431900 2597500 6611 106 6771;6772 17500;17501;17502;17503 27381;27382;27383;27384;27385;27386;27387;27388 27384 91;92 8 INQLSEENGDLSFK QCQDLKTEKSQMDRKINQLSEENGDLSFKL KINQLSEENGDLSFKLREFASHLQQLQDAL K I N F K L 0 0 2 1 0 1 2 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 14 0 1592.7682 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 313 326 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 3.9944E-13 113.63 2 2 0.88106 0.80667 42.289 4 Median 0.54364 0.55555 9.2742 2 0 Median 1.4222 1.1458 6.1673 2 0 Median 64367000 34686000 29681000 45348000 26888000 18460000 19019000 7798000 11221000 6612 186;1747;718 6773 17504;17505;17506;17507 27389;27390;27391;27392;27393;27394 27391 5 INQLYEQSK YYSFFDLNPKYDAIRINQLYEQSKWAILLE KYDAIRINQLYEQSKWAILLEEIECTEEEM R I N S K W 0 0 1 0 0 2 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1121.5717 A8K6S3 A8K6S3 291 299 yes yes 2 0.0047626 75.738 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23855000 0 23855000 23855000 0 23855000 0 0 0 6613 762 6774 17508;17509 27395;27396 27396 2 INQQENSLTLEK KNTSQETMLRDLQEKINQQENSLTLEKLKL QEKINQQENSLTLEKLKLAVADLEKQRDCS K I N E K L 0 0 2 0 0 2 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1415.7256 P49454 P49454 544 555 CENPF Centromere protein F yes yes 2 3.63E-08 140.49 2 2 1.4658 1.3366 12.809 4 Median 1.2247 1.2844 10.619 2 0 Median 1.7979 1.4417 15.679 2 0 Median 31651000 14556000 17095000 26913000 12876000 14037000 4738400 1680100 3058300 6614 1581 6775 17510;17511;17512;17513 27397;27398;27399;27400 27397 4 INQVFHGSCITEGNELTK YSRLPKDDVHAKESKINQVFHGSCITEGNE VFHGSCITEGNELTKTLIKLCYDAFTENMA K I N T K T 0 0 2 0 1 1 2 2 1 2 1 1 0 1 0 1 2 0 0 1 0 0 18 0 2045.984 P78527 P78527 1896 1913 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 9.3214E-06 66.152 2 0.34071 0.27231 0.86152 2 Median NaN NaN NaN 0 0 Median 0.34071 0.27231 0.86152 2 0 Median 24718000 18377000 6340900 0 0 0 24718000 18377000 6340900 6615 1665 6776 17514;17515 27401;27402 27401 2 INSAPQQIEVFPPFR QTSLTASVTNKAGQRINSAPQQIEVFPPFR INSAPQQIEVFPPFRLMPRKVTLLIGATMQ R I N F R L 1 1 1 0 0 2 1 0 0 2 0 0 0 2 3 1 0 0 0 1 0 0 15 0 1741.9152 Q8TEM1 Q8TEM1 1068 1082 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.022072 37.426 2 0.68633 0.57622 NaN 1 Median NaN NaN NaN 0 0 Median 0.68633 0.57622 NaN 1 0 Median 4719500 1894700 2824800 0 0 0 4719500 1894700 2824800 6616 1937 6777 17516;17517 27403;27404;27405;27406 27403 4 INVNEIFYDLVR QWNNCAFLESSAKSKINVNEIFYDLVRQIN KSKINVNEIFYDLVRQINRKTPVPGKARKK K I N V R Q 0 1 2 1 0 0 1 0 0 2 1 0 0 1 0 0 0 0 1 2 0 0 12 0 1493.7878 A0A024RB87;P61224;Q5U0C3;A8KAH9;P62834;A0A0J9YXB3;A6NIZ1;F5H823;B7ZB78;F5GZG1;B7ZAY2 A0A024RB87 152 163 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 2 1.5921E-12 127.42 2 1.8293 1.9501 3.9572 2 Median 1.8293 1.9501 3.9572 2 0 Median NaN NaN NaN 0 0 Median 61672000 20568000 41103000 61672000 20568000 41103000 0 0 0 6617 329 6778 17518;17519 27407;27408;27409;27410 27410 4 INVQNNVDLGQPVK EETLLGISKKAKQMKINVQNNVDLGQPVKN KINVQNNVDLGQPVKNKRVFKEESSEFDVR K I N V K N 0 0 3 1 0 2 0 1 0 1 1 1 0 0 1 0 0 0 0 3 0 0 14 0 1536.826 B4DJ73;B4DHL5;B4E228;Q6NW34;B4DVN9;E9PFF8;B4DDJ6 B4DJ73 118 131 C3orf17 Uncharacterized protein C3orf17 yes no 2 0.00024871 62.408 1 1.0868 1.0952 NaN 1 Median 1.0868 1.0952 NaN 1 0 Median NaN NaN NaN 0 0 Median 7433200 4571600 2861600 7433200 4571600 2861600 0 0 0 6618 977 6779 17520 27411 27411 1 INVYYNEAAGNK PTGSYHGDSDLQLERINVYYNEAAGNKYVP LERINVYYNEAAGNKYVPRAILVDLEPGTM R I N N K Y 2 0 3 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 2 1 0 0 12 0 1354.6517 Q13885;B2R6L0;A5D907;A5D906 Q13885 47 58 TUBB2A Tubulin beta-2A chain yes no 2 0.013323 53.683 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5954900 0 5954900 5954900 0 5954900 0 0 0 6619 1723 6780 17521 27412 27412 1 INVYYNEATGGK PTGTYHGDSDLQLERINVYYNEATGGKYVP LERINVYYNEATGGKYVPRAVLVDLEPGTM R I N G K Y 1 0 2 0 0 0 1 2 0 1 0 1 0 0 0 0 1 0 2 1 0 0 12 0 1327.6408 Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;B4DNW1 Q8IZ29 47 58 TUBB2C;TUBB4B Tubulin beta-4B chain yes no 2 1.3878E-14 137.85 2 1.4612 1.6797 12.269 2 Median 1.4612 1.6797 12.269 2 0 Median NaN NaN NaN 0 0 Median 409210000 165040000 244170000 409210000 165040000 244170000 0 0 0 6620 1660 6781 17522;17523 27413;27414;27415;27416 27413 4 INVYYNESSSQK PAGGYVGDSALQLERINVYYNESSSQKYVP LERINVYYNESSSQKYVPRAALVDLEPGTM R I N Q K Y 0 0 2 0 0 1 1 0 0 1 0 1 0 0 0 3 0 0 2 1 0 0 12 0 1430.6678 Q9BUF5;B4DP54;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 Q9BUF5 47 58 TUBB6 Tubulin beta-6 chain yes no 2 0.0016061 76.143 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19763000 19763000 0 19763000 19763000 0 0 0 0 6621 2004 6782 17524 27417 27417 1 INYEESMMVR RHPHVTRQSQEDQHRINYEESMMVRLSVSK EDQHRINYEESMMVRLSVSKREKGRRKRAN R I N V R L 0 1 1 0 0 0 2 0 0 1 0 0 2 0 0 1 0 0 1 1 0 0 10 0 1270.5686 Q8NEJ9;H0YJ17 Q8NEJ9 239 248 NGDN Neuroguidin yes no 2 0.036453 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6622 1927 6783 17525 27418 27418 1758;1759 1 IPAISR MELLTQNWDLSKKLRIPAISRLQKMHNVDI NWDLSKKLRIPAISRLQKMHNVDIVLQVLK R I P S R L 1 1 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 6 0 655.40171 Q8IZT6;B3KWI2;B3KM85;Q5VYL4 Q8IZT6 997 1002 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 0.037313 122.5 1 0.72965 0.72515 NaN 1 Median 0.72965 0.72515 NaN 1 0 Median NaN NaN NaN 0 0 Median 11867000 5339000 6527500 11867000 5339000 6527500 0 0 0 6623 1902 6784 17526 27419 27419 1 IPALDLLIK TCTSVYTKDRAAKCKIPALDLLIKLLQTFR RAAKCKIPALDLLIKLLQTFRSSRLMDEFK K I P I K L 1 0 0 1 0 0 0 0 0 2 3 1 0 0 1 0 0 0 0 0 0 0 9 0 994.64267 P78527;B4DL41;F5GX40 P78527 125 133 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.00025784 104.44 2 2 0.46892 0.42083 58.944 4 Median 0.66479 0.69703 5.7507 2 0 Median 0.319 0.2521 6.8596 2 0 Median 81808000 51540000 30268000 74730000 46233000 28497000 7077800 5306300 1771500 6624 1665 6785 17527;17528;17529;17530 27420;27421;27422;27423;27424 27422 5 IPANQLAELWLK LQTNIEALKSGIQGKIPANQLAELWLKLID QGKIPANQLAELWLKLIDEVIEDTRYTLPL K I P L K L 2 0 1 0 0 1 1 0 0 1 3 1 0 0 1 0 0 1 0 0 0 0 12 0 1394.7922 Q9NZM1;H0YD14 Q9NZM1 682 693 MYOF Myoferlin yes no 2 0.052502 42.21 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6625 2088 6786 17531 27425 27425 1 IPCDSPQSDPVDTPTSTK PGHTEELVAAGKTTKIPCDSPQSDPVDTPT DSPQSDPVDTPTSTKQRPKRSIRKADVEGE K I P T K Q 0 0 0 3 1 1 0 0 0 1 0 1 0 0 4 3 3 0 0 1 0 0 18 0 1943.8782 P46013 P46013 1249 1266 MKI67 Antigen KI-67 yes yes 2 3.0732E-17 124.07 2 1 1.9941 2.1113 16.845 3 Median 1.9082 1.9794 9.1175 2 0 Median 3.3419 2.5918 NaN 1 0 Median 75358000 20167000 55191000 61403000 17058000 44346000 13955000 3109700 10845000 6626 1569 6787 17532;17533;17534 27426;27427;27428;27429;27430 27426 5 IPCESPPLEVVDTTASTK SGHTQESLTAGKATKIPCESPPLEVVDTTA ESPPLEVVDTTASTKRHLRTRVQKVQVKEE K I P T K R 1 0 0 1 1 0 2 0 0 1 1 1 0 0 3 2 3 0 0 2 0 0 18 0 1942.9558 P46013 P46013 2704 2721 MKI67 Antigen KI-67 yes yes 2 0.00098149 56.482 2 1 5.6837 4.4411 NaN 1 Median NaN NaN NaN 0 0 Median 5.6837 4.4411 NaN 1 0 Median 3251800 519020 2732800 0 0 0 3251800 519020 2732800 6627 1569 6788 17535;17536;17537 27431;27432;27433 27432 3 IPDEFDNDPILVQQLR VYIFGNNPVDENGAKIPDEFDNDPILVQQL PDEFDNDPILVQQLRRTYKYFKDYRQMIIE K I P L R R 0 1 1 3 0 2 1 0 0 2 2 0 0 1 2 0 0 0 0 1 0 0 16 0 1910.9738 Q0VAB1;A0A024R0M6;Q3ZCQ8;M0R047 Q0VAB1 201 216 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 2 0.00013565 85.845 2 2 1.1785 1.1169 16.023 4 Median 1.2278 1.2272 10.483 2 0 Median 1.1214 0.99042 14.168 2 0 Median 25497000 13188000 12308000 20687000 11032000 9654500 4810300 2156400 2654000 6628 53 6789 17538;17539;17540;17541 27434;27435;27436;27437;27438;27439 27437 6 IPDHDPAPNVTVLLR KKGKTKKKEEKPNGKIPDHDPAPNVTVLLR IPDHDPAPNVTVLLREPVRAPAVAVAPTPV K I P L R E 1 1 1 2 0 0 0 0 1 1 2 0 0 0 3 0 1 0 0 2 0 0 15 0 1655.8995 A0A0A0MRV0;A7BI36;Q9P2E9;A2A2S5;Q32NB1 A0A0A0MRV0 83 97 RRBP1 Ribosome-binding protein 1 yes no 3 0.023682 21.841 1 0.76252 0.7615 NaN 1 Median 0.76252 0.7615 NaN 1 0 Median NaN NaN NaN 0 0 Median 8054300 5068800 2985600 8054300 5068800 2985600 0 0 0 6629 471 6790 17542 27440 27440 1 IPDPEAVKPDDWDEDAPAK DPEDRKPEDWDERPKIPDPEAVKPDDWDED EAVKPDDWDEDAPAKIPDEEATKPEGWLDD K I P A K I 3 0 0 5 0 0 2 0 0 1 0 2 0 0 4 0 0 1 0 1 0 0 19 1 2106.9746 P27824;D6RGY2;Q6ZP56 P27824 293 311 CANX Calnexin yes no 3 0.00029719 30.336 1 0.8917 1.054 NaN 1 Median 0.8917 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median 32139000 18698000 13441000 32139000 18698000 13441000 0 0 0 6630 1526 6791 17543 27441 27441 1 IPDVDHAIVVLQK I P Q K 1 0 0 2 0 1 0 0 1 2 1 1 0 0 1 0 0 0 0 3 0 0 13 0 1445.8242 REV__Q5T8U3 yes yes 2 0.005822 46.891 1 1 0.83416 0.79623 6.7909 2 Median 0.75509 0.83539 NaN 1 0 Median 0.9215 0.75889 NaN 1 0 Median 86636000 47585000 39051000 57747000 32649000 25098000 28889000 14936000 13953000 + 6631 2179 6792 17544;17545 27442;27443;27444 27443 3 IPDWFLNR VERVITIMQNPRQYKIPDWFLNRQKDVKDG QNPRQYKIPDWFLNRQKDVKDGKYSQVLAN K I P N R Q 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 8 0 1059.5502 P62269;J3JS69 P62269 79 86 RPS18 40S ribosomal protein S18 yes no 2 0.0042374 94.262 2 0.95103 1.0794 2.0388 2 Median 0.95103 1.0794 2.0388 2 0 Median NaN NaN NaN 0 0 Median 262500000 134180000 128310000 262500000 134180000 128310000 0 0 0 6632 1639 6793 17546;17547 27445;27446;27447;27448;27449 27447 5 IPEGLFDPSNVK FPNGYNCDFGAERLKIPEGLFDPSNVKGLS RLKIPEGLFDPSNVKGLSGKTMLGVSHVVT K I P V K G 0 0 1 1 0 0 1 1 0 1 1 1 0 1 2 1 0 0 0 1 0 0 12 0 1314.682 Q6FI97;Q53FS0;O96019;D3DNS0;O94805 Q6FI97 304 315 BAF53A;ACTL6A;ACTL6B Actin-like protein 6A;Actin-like protein 6B yes no 2 1.1412E-30 175.49 2 0.80042 0.90228 1.0676 2 Median 0.80042 0.90228 1.0676 2 0 Median NaN NaN NaN 0 0 Median 203590000 112730000 90858000 203590000 112730000 90858000 0 0 0 6633 1434 6794 17548;17549 27450;27451;27452 27452 3 IPEISIQDMTAQVTSPSGK PSVANVGSHCDLSLKIPEISIQDMTAQVTS SIQDMTAQVTSPSGKTHEAEIVEGENHTYC K I P G K T 1 0 0 1 0 2 1 1 0 3 0 1 1 0 2 3 2 0 0 1 0 0 19 0 2001.0089 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;Q2VP91 P21333 2166 2184 FLNA;FLJ00119 Filamin-A yes no 2 0.00011512 59.898 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10072000 0 10072000 10072000 0 10072000 0 0 0 6634 1504 6795 17550;17551;17552 27453;27454;27455 27454 1267 3 IPEIWEGHNIADYIDPAIMK QKYWDLMNLSEKHDKIPEIWEGHNIADYID EGHNIADYIDPAIMKKLEELEKEEELRTAA K I P M K K 2 0 1 2 0 0 2 1 1 5 0 1 1 0 2 0 0 1 1 0 0 0 20 0 2324.1511 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 427 446 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 6.0307E-07 70.555 2 2 1.4314 1.4667 8.6883 4 Linear 1.3305 1.4554 3.0251 2 0 Median 1.5926 1.2667 4.9554 2 0 Median 120140000 55887000 64258000 88294000 44031000 44264000 31851000 11856000 19994000 6635 1183 6796;6797 17553;17554;17555;17556 27456;27457;27458;27459;27460 27460 896 5 IPFNQALVFSNLHSR VFEEKTQHLQELFSRIPFNQALVFSNLHSR IPFNQALVFSNLHSRAQHLADILSSKGFPA R I P S R A 1 1 2 0 0 1 0 0 1 1 2 0 0 2 1 2 0 0 0 1 0 0 15 0 1741.9264 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6 Q8TDR3 307 321 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 3 0.051664 16.123 1 1.5136 1.3421 NaN 1 Median NaN NaN NaN 0 0 Median 1.5136 1.3421 NaN 1 0 Median 2396900 772650 1624300 0 0 0 2396900 772650 1624300 6636 1901 6798 17557 27461 27461 1 IPGGIIEDSCVLR GRKEIDIKKYARVEKIPGGIIEDSCVLRGV EKIPGGIIEDSCVLRGVMINKDVTHPRMRR K I P L R G 0 1 0 1 1 0 1 2 0 3 1 0 0 0 1 1 0 0 0 1 0 0 13 0 1427.7442 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368;Q5SZX6;E9PRC8;E9PQ35 B4DUR8 159 171 CCT3 T-complex protein 1 subunit gamma yes no 2 0.028608 33.89 1 1.2697 1.0995 NaN 1 Median NaN NaN NaN 0 0 Median 1.2697 1.0995 NaN 1 0 Median 1955100 741590 1213500 0 0 0 1955100 741590 1213500 6637 951 6799 17558 27462 27462 1 IPGIYGR GKVLDAIIQEKKSGRIPGIYGRLGDLGAID IQEKKSGRIPGIYGRLGDLGAIDEKYDVAI R I P G R L 0 1 0 0 0 0 0 2 0 2 0 0 0 0 1 0 0 0 1 0 0 0 7 0 774.43882 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 612 618 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0098981 113.07 2 0.82886 0.96574 4.5256 2 Median 0.82886 0.96574 4.5256 2 0 Median NaN NaN NaN 0 0 Median 509270000 278560000 230720000 509270000 278560000 230720000 0 0 0 6638 2070 6800 17559;17560 27463;27464 27464 2 IPGLLGVFQK LERGSNTIASAAADKIPGLLGVFQKLIASK AAADKIPGLLGVFQKLIASKANDHQGFYLL K I P Q K L 0 0 0 0 0 1 0 2 0 1 2 1 0 1 1 0 0 0 0 1 0 0 10 0 1070.6488 B4DUC5;P55060;B4DPS6;B4DM31;B4DS32 B4DUC5 510 519 CSE1L Exportin-2 yes no 2 8.0864E-08 111.82 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15758000 0 15758000 15758000 0 15758000 0 0 0 6639 1037 6801 17561;17562 27465;27466 27465 2 IPGLLSPHPLLQLSYTATDR KMKVVLAGHGHLYSRIPGLLSPHPLLQLSY SPHPLLQLSYTATDRHPQALEAAQAELQQH R I P D R H 1 1 0 1 0 1 0 1 1 1 5 0 0 0 3 2 2 0 1 0 0 0 20 0 2191.2001 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1254 1273 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 2.3417E-18 121.44 2 1 1.3893 1.5601 57.177 3 Plateau 1.3926 1.4967 5.8673 2 0 Median 0.64283 0.55739 NaN 1 0 Median 73308000 27388000 45920000 70828000 25855000 44973000 2479400 1533300 946170 6640 587 6802 17563;17564;17565 27467;27468;27469;27470;27471 27468 5 IPHDFGLR HGRALMEACNEFYTRIPHDFGLRTPPLIRT CNEFYTRIPHDFGLRTPPLIRTQKELSEKI R I P L R T 0 1 0 1 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 0 0 0 8 0 953.5083 G3V167;A8K214;Q9UGN5;B4DV82 G3V167 309 316 PARP2 Poly [ADP-ribose] polymerase 2 yes no 3 0.0069042 57.177 2 0.71053 0.77153 10.817 2 Median 0.71053 0.77153 10.817 2 0 Median NaN NaN NaN 0 0 Median 70836000 40358000 30479000 70836000 40358000 30479000 0 0 0 6641 706 6803 17566;17567 27472;27473;27474;27475 27475 4 IPILLIQQPGK LVPGSQLILGPHESKIPILLIQQPGKVTGE HESKIPILLIQQPGKVTGEDRLGWGSGWDV K I P G K V 0 0 0 0 0 2 0 1 0 3 2 1 0 0 2 0 0 0 0 0 0 0 11 0 1218.77 Q96F88;Q99575 Q96F88 595 605 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 2.0746E-12 141.47 2 2 0.44322 0.40696 20.294 4 Median 0.32205 0.34575 0.44514 2 0 Median 0.60936 0.49037 3.7596 2 0 Median 91530000 65401000 26129000 70203000 51884000 18319000 21327000 13516000 7810100 6642 1965 6804 17568;17569;17570;17571 27476;27477;27478;27479;27480;27481;27482;27483 27479 8 IPILSTFLTAR CSDPELAAHPQVLNKIPILSTFLTARGDPD VLNKIPILSTFLTARGDPDDAARRSMIDDT K I P A R G 1 1 0 0 0 0 0 0 0 2 2 0 0 1 1 1 2 0 0 0 0 0 11 0 1230.7336 C9J5H8;Q9UBB6 C9J5H8 113 123 NCDN Neurochondrin yes no 2 0.0019117 68.735 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1773600 0 1773600 1773600 0 1773600 0 0 0 6643 1130 6805 17572;17573 27484;27485 27484 2 IPILYGEVEK EKAVLENNLGAAVLRIPILYGEVEKLEESA AAVLRIPILYGEVEKLEESAVTVMFDKVQF R I P E K L 0 0 0 0 0 0 2 1 0 2 1 1 0 0 1 0 0 0 1 1 0 0 10 0 1159.6489 A8K7A4;A0A140VJP2;Q9NZL9;H7C0X7;B7Z1X8 A8K7A4 171 180 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 2 0.0033968 64.711 1 1 7.2582 7.3209 NaN 1 Median 7.2582 7.3209 NaN 1 0 Median NaN NaN NaN 0 0 Median 13818000 6038800 7779600 13325000 6038800 7286400 493120 0 493120 6644 605 6806 17574;17575 27486;27487 27486 2 IPISLVLR TAQALSSGSGSQETKIPISLVLRLRNSKKE SGSQETKIPISLVLRLRNSKKELNDIRFEF K I P L R L 0 1 0 0 0 0 0 0 0 2 2 0 0 0 1 1 0 0 0 1 0 0 8 0 909.60114 A0A024R2M7;O95747;C9JIG9 A0A024R2M7 432 439 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 0.017319 67.032 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7362800 0 7362800 7362800 0 7362800 0 0 0 6645 117 6807 17576 27488 27488 1 IPLGLDLK GTNPGTEDIQFPIQKIPLGLDLKNLRLPRR IQFPIQKIPLGLDLKNLRLPRRKMSFDIID K I P L K N 0 0 0 1 0 0 0 1 0 1 3 1 0 0 1 0 0 0 0 0 0 0 8 0 867.54295 M0R3F6;A8K5G0;A0A024R7K0;M0R2Z9;Q8IX01 M0R3F6 298 305 SUGP2;SFRS14 SURP and G-patch domain-containing protein 2 yes no 2 0.038748 47.849 1 1.0284 1.0889 NaN 1 Median 1.0284 1.0889 NaN 1 0 Median NaN NaN NaN 0 0 Median 31261000 15422000 15839000 31261000 15422000 15839000 0 0 0 6646 228 6808 17577 27489 27489 1 IPLLLTSLSFK KKWLEVEIAPDIRGRIPLLLTSLSFKVLKH IRGRIPLLLTSLSFKVLKHPDKKFRVGQAL R I P F K V 0 0 0 0 0 0 0 0 0 1 4 1 0 1 1 2 1 0 0 0 0 0 11 0 1230.7588 Q14690 Q14690 1178 1188 PDCD11 Protein RRP5 homolog yes yes 2 3.8072E-05 99.815 2 1.0396 1.1353 0.14968 2 Median 1.0396 1.1353 0.14968 2 0 Median NaN NaN NaN 0 0 Median 84507000 41134000 43373000 84507000 41134000 43373000 0 0 0 6647 1741 6809 17578;17579 27490;27491;27492;27493 27492 4 IPLNPYLNLHSLLPASNLAGK PPGVSLLGEPPKDYRIPLNPYLNLHSLLPA LNLHSLLPASNLAGKEARGWGGAGRSRRPA R I P G K E 2 0 3 0 0 0 0 1 1 1 6 1 0 0 3 2 0 0 1 0 0 0 21 0 2244.263 A0A087WZ13;E9PAU2 A0A087WZ13 504 524 RAVER1 yes no 3 0.048404 10.914 1 1.2756 1.0475 NaN 1 Median NaN NaN NaN 0 0 Median 1.2756 1.0475 NaN 1 0 Median 9346700 4135700 5210900 0 0 0 9346700 4135700 5210900 6648 438 6810 17580 27494 27494 1 IPLVPENLLK SSCTTRKMAEQEQRKIPLVPENLLKKRKAY QEQRKIPLVPENLLKKRKAYQALKATQAKQ K I P L K K 0 0 1 0 0 0 1 0 0 1 3 1 0 0 2 0 0 0 0 1 0 0 10 0 1134.7012 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 18 27 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 1.3473E-05 102.62 2 2 0.98849 0.98722 4.122 4 Linear 0.84638 0.97258 3.9611 2 0 Median 1.1519 0.91658 0.33235 2 0 Median 434670000 230110000 204560000 400950000 213610000 187350000 33719000 16507000 17213000 6649 378 6811 17581;17582;17583;17584 27495;27496;27497;27498;27499;27500 27496 6 IPNFDVR LINGAEGIGTGWSCKIPNFDVREIVNNIRR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP K I P V R E 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 7 0 859.4552 P11388 P11388 864 870 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.02697 84.097 2 2 0.99292 1.0011 17.35 4 Median 0.72883 0.86016 2.5649 2 0 Median 1.3333 1.1597 1.9087 2 0 Median 1913500000 1029700000 883820000 1600200000 895790000 704390000 313360000 133930000 179430000 6650 1471 6812 17585;17586;17587;17588 27501;27502;27503;27504;27505;27506;27507;27508 27505 8 IPNPDFFEDLEPFR MIDNPSYQGIWKPRKIPNPDFFEDLEPFRM KIPNPDFFEDLEPFRMTPFSAIGLELWSMT K I P F R M 0 1 1 2 0 0 2 0 0 1 1 0 0 3 3 0 0 0 0 0 0 0 14 0 1734.8253 P27824 P27824 402 415 CANX Calnexin yes yes 2 2.6483E-06 104.87 2 0.77965 0.78149 7.5714 2 Median 0.77965 0.78149 7.5714 2 0 Median NaN NaN NaN 0 0 Median 35968000 21389000 14580000 35968000 21389000 14580000 0 0 0 6651 1526 6813 17589;17590 27509;27510;27511;27512 27510 4 IPPPVIMVQNVSFK VSDKTLSFYFPPCGKIPPPVIMVQNVSFKY KIPPPVIMVQNVSFKYTKDGPCIYNNLEFG K I P F K Y 0 0 1 0 0 1 0 0 0 2 0 1 1 1 3 1 0 0 0 3 0 0 14 0 1567.8796 A0A090N7X1;A0A090N7Y2;Q9UG63 A0A090N7X1 391 404 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.0077169 39.918 2 1.2552 1.0247 2.0788 2 Median NaN NaN NaN 0 0 Median 1.2552 1.0247 2.0788 2 0 Median 4289300 1900200 2389100 0 0 0 4289300 1900200 2389100 6652 455 6814 17591;17592 27513;27514 27514 2 IPPSSAPTVLSVPAGTTIVK SGMAALAAAAAATQKIPPSSAPTVLSVPAG APTVLSVPAGTTIVKTMAVTPGTTTLPATV K I P V K T 2 0 0 0 0 0 0 1 0 2 1 1 0 0 4 3 3 0 0 3 0 0 20 0 1934.1088 A6NEM2;P51610 A6NEM2 559 578 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 7.8247E-07 80.312 2 2 0.98908 0.89949 30.676 4 Median 0.68748 0.70875 2.0563 2 0 Median 1.485 1.1966 8.7132 2 0 Median 56722000 29924000 26797000 42224000 24588000 17635000 14498000 5336100 9161900 6653 680 6815 17593;17594;17595;17596 27515;27516;27517;27518;27519;27520;27521;27522;27523 27516 9 IPPVAVR DMKADVTRLPATIARIPPVAVRLQMSERNI RLPATIARIPPVAVRLQMSERNILSRLANR R I P V R L 1 1 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 7 0 750.47521 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1871 1877 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.047923 56.026 1 1.9077 1.6377 NaN 1 Median NaN NaN NaN 0 0 Median 1.9077 1.6377 NaN 1 0 Median 8198500 2558600 5639900 0 0 0 8198500 2558600 5639900 6654 515 6816 17597 27524 27524 1 IPQLAPPASDSTVTK PQAPVPTTVPVVDVRIPQLAPPASDSTVTK IPQLAPPASDSTVTKLDFDLEPEPPPAPPR R I P T K L 2 0 0 1 0 1 0 0 0 1 1 1 0 0 3 2 2 0 0 1 0 0 15 0 1523.8195 Q16513 Q16513 551 565 PKN2 Serine/threonine-protein kinase N2 yes yes 2 0.00016833 78.342 2 1.9136 1.9815 0.85378 2 Median 1.9136 1.9815 0.85378 2 0 Median NaN NaN NaN 0 0 Median 32246000 10051000 22196000 32246000 10051000 22196000 0 0 0 6655 1769 6817 17598;17599 27525;27526;27527;27528;27529 27525 5 IPSPLGYAAIPIK VARRRKCAARDPEDRIPSPLGYAAIPIKFS DRIPSPLGYAAIPIKFSEKQQASHYLYVRA R I P I K F 2 0 0 0 0 0 0 1 0 3 1 1 0 0 3 1 0 0 1 0 0 0 13 0 1338.7911 Q9Y3A4 Q9Y3A4 17 29 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 1.4334E-18 138.23 2 2 1.1902 1.2286 10.498 4 Linear 1.1084 1.2164 1.4575 2 0 Median 1.2766 1.0185 3.6245 2 0 Median 119680000 55545000 64140000 94659000 44627000 50032000 25025000 10918000 14107000 6656 2133 6818 17600;17601;17602;17603 27530;27531;27532;27533;27534;27535;27536;27537 27533 8 IPVDTYNNILTVLK ATSSAVSKELTRLLKIPVDTYNNILTVLKL KIPVDTYNNILTVLKLKHFHPLFEYFDYES K I P L K L 0 0 2 1 0 0 0 0 0 2 2 1 0 0 1 0 2 0 1 2 0 0 14 0 1601.9029 Q96QK1;Q5HYM2;Q53FR4 Q96QK1 404 417 VPS35;DKFZp686O2462 Vacuolar protein sorting-associated protein 35 yes no 2 4.8544E-06 95.094 2 2.9501 2.9757 NaN 1 Median 2.9501 2.9757 NaN 1 0 Median NaN NaN NaN 0 0 Median 13230000 2106900 11123000 13230000 2106900 11123000 0 0 0 6657 1985 6819 17604;17605 27538;27539;27540 27538 3 IPVQALLHLR QIQEPYTAVGYLASRIPVQALLHLRHPEAE YLASRIPVQALLHLRHPEAEDPSAEHPWCA R I P L R H 1 1 0 0 0 1 0 0 1 1 3 0 0 0 1 0 0 0 0 1 0 0 10 0 1158.7237 Q0EFC6;B4DYK6;A0A024RCR2;P36915;A8MPZ0;Q86Z07;B4DWZ0;A0A140T8Y2;Q96QB8;B7ZAS6;B4DNS8;Q6P458 Q0EFC6 436 445 HSR1;GNL1 Guanine nucleotide-binding protein-like 1 yes no 3 0.019733 61.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6658 366 6820 17606 27541 27541 1 IPVSGPFLVK NAAPSDLESIFKDAKIPVSGPFLVKTGYAF FKDAKIPVSGPFLVKTGYAFVDCPDESWAL K I P V K T 0 0 0 0 0 0 0 1 0 1 1 1 0 1 2 1 0 0 0 2 0 0 10 0 1055.6379 O00425;F8WD15 O00425 27 36 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 2 0.041181 38.303 1 1.5615 1.6918 NaN 1 Median 1.5615 1.6918 NaN 1 0 Median NaN NaN NaN 0 0 Median 38887000 15772000 23115000 38887000 15772000 23115000 0 0 0 6659 1364 6821 17607 27542 27542 1 IPWFQYPIIYDIR GVQQDTILAEGLHFRIPWFQYPIIYDIRAR FRIPWFQYPIIYDIRARPRKISSPTGSKDL R I P I R A 0 1 0 1 0 1 0 0 0 4 0 0 0 1 2 0 0 1 2 0 0 0 13 0 1722.9134 J3KPX7;Q99623;F5GY37;B4DW05;F5H0C5 J3KPX7 72 84 PHB2 Prohibitin-2 yes no 2 2.1987E-30 170.52 2 1.1592 1.315 5.7921 2 Median 1.1592 1.315 5.7921 2 0 Median NaN NaN NaN 0 0 Median 126020000 59379000 66645000 126020000 59379000 66645000 0 0 0 6660 1328 6822 17608;17609 27543;27544;27545;27546;27547 27544 5 IPYTTVLR YPTFLHLHGKTFDYKIPYTTVLRLFLLPHK GKTFDYKIPYTTVLRLFLLPHKDQRQMFFV K I P L R L 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 1 1 0 0 8 0 961.55967 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 234 241 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0050709 91.626 2 2 0.79905 0.81374 2.931 4 Median 0.69884 0.82454 1.2378 2 0 Median 0.91505 0.79306 3.0148 2 0 Median 1488000000 839790000 648190000 1383000000 786270000 596710000 104990000 53518000 51474000 6661 167 6823 17610;17611;17612;17613 27548;27549;27550;27551;27552;27553;27554;27555 27549 8 IQAAASTPTNATAASDANTGDR SNPPLATILIPPHARIQAAASTPTNATAAS PTNATAASDANTGDRGQTNNAASASASNST R I Q D R G 7 1 2 2 0 1 0 1 0 1 0 0 0 0 1 2 4 0 0 0 0 0 22 0 2102.9829 Q6FI27;B5BUC0;P49841 Q6FI27 384 405 GSK3B Glycogen synthase kinase-3 beta yes no 2 6.581E-05 53.3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2807800 0 2807800 2807800 0 2807800 0 0 0 6662 1078 6824 17614 27556 27556 1 IQAELAVILK MSSKSPRDWEQFEYKIQAELAVILKFVLDH QFEYKIQAELAVILKFVLDHEDGLNLNEDL K I Q L K F 2 0 0 0 0 1 1 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1096.6856 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;G1UI36;F5H2F3;F5H3L6;F5H0Z7;F5H763;Q86XH4;F5GZW1;A8K394;Q4LE64;Q14980 Q4LE64 123 132 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.020901 46.462 2 1.1439 0.91965 22.952 2 Median NaN NaN NaN 0 0 Median 1.1439 0.91965 22.952 2 0 Median 13137000 5221800 7915500 0 0 0 13137000 5221800 7915500 6663 186;1747;718 6825 17615;17616 27557;27558;27559 27558 3 IQAIAWAR VLVPGGFGVRGTEGKIQAIAWARNQKKPFL VRGTEGKIQAIAWARNQKKPFLGVCLGMQL K I Q A R N 3 1 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 8 0 927.52904 P17812;B4E1E0;B4DMB5 P17812 382 389 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.011877 68.915 3 1.4089 1.3985 NaN 1 Median 1.4089 1.3985 NaN 1 0 Median NaN NaN NaN 0 0 Median 15933000 8412900 7520400 15933000 8412900 7520400 0 0 0 6664 1494 6826 17617;17618;17619 27560;27561;27562;27563 27563 4 IQALPTVPVTEEHVGSGLECPVCK ______________________________ TEEHVGSGLECPVCKDDYALGERVRQLPCN K I Q C K D 1 0 0 0 2 1 3 2 1 1 2 1 0 0 3 1 2 0 0 4 0 0 24 0 2619.3037 O60372;Q9NPN4;K7EIY6;A8K0Q1;A0A024R206;Q9BV68 O60372 2 25 RNF126 E3 ubiquitin-protein ligase RNF126 yes no 3 0.0010527 26.417 1 2 1.056 0.85865 21.603 2 Median NaN NaN NaN 0 0 Median 1.056 0.85865 21.603 2 0 Median 10484000 2422500 8061400 4947600 0 4947600 5536300 2422500 3113800 6665 100 6827 17620;17621;17622 27564;27565;27566;27567 27565 4 IQALQQQADEAEDR ______________________________ KIQALQQQADEAEDRAQGLQRELDGERERR K I Q D R A 3 1 0 2 0 4 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 14 0 1613.7645 B4DVY2;V9HW56;P67936;B4DTB1 B4DVY2 14 27 HEL-S-108;TPM4 Tropomyosin alpha-4 chain yes no 2 3.8972E-05 94.767 1 1.8701 1.6581 NaN 1 Median NaN NaN NaN 0 0 Median 1.8701 1.6581 NaN 1 0 Median 2397700 838260 1559400 0 0 0 2397700 838260 1559400 + 6666 1043 6828 17623 27568;27569 27568 2 IQAVIDSGVCR ACWALSYLSDGPNEKIQAVIDSGVCRRLVE PNEKIQAVIDSGVCRRLVELLMHNDYKVAS K I Q C R R 1 1 0 1 1 1 0 1 0 2 0 0 0 0 0 1 0 0 0 2 0 0 11 0 1216.6234 B4DII5;B4DWX3;O60684;O15131;Q5TFJ7 B4DII5 284 294 KPNA6;KPNA5 Importin subunit alpha;Importin subunit alpha-7;Importin subunit alpha-6 yes no 2 0.0027477 71.614 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5148400 0 5148400 5148400 0 5148400 0 0 0 6667 980 6829 17624 27570 27570 1 IQAVLALSR KAMLIRLKDKIPNVRIQAVLALSRLQDPKD KIPNVRIQAVLALSRLQDPKDDECPVVNAY R I Q S R L 2 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 969.59712 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 160 168 NCAPG Condensin complex subunit 3 yes no 2 0.00062596 96.624 1 2 1.5225 1.2342 20.5 3 Median 0.85091 0.87051 NaN 1 0 Median 1.5242 1.2414 0.82702 2 0 Median 56806000 27490000 29315000 32769000 17645000 15124000 24036000 9844900 14192000 6668 1995 6830 17625;17626;17627 27571;27572;27573;27574;27575;27576;27577;27578;27579 27573 9 IQCPNQGCEAVYSSVSGLK EVLHKWKTDIKKYHRIQCPNQGCEAVYSSV NQGCEAVYSSVSGLKAHLGSCTLGNFVAGK R I Q L K A 1 0 1 0 2 2 1 2 0 1 1 1 0 0 1 3 0 0 1 2 0 0 19 0 2095.9667 G3XAG1;Q96ME7;B4DES6;B7Z9P6;Q658M0;B4E0X7 G3XAG1 405 423 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2 8.8871E-06 74.853 2 2 0.49356 0.44268 39.777 4 Median 0.3112 0.3234 6.0126 2 0 Median 0.79272 0.63492 12.616 2 0 Median 54987000 34671000 20316000 30409000 20699000 9710000 24578000 13971000 10606000 6669 1275 6831 17628;17629;17630;17631 27580;27581;27582;27583;27584;27585;27586;27587 27583 8 IQDIVGILR EQDAQAPDLQRVHKRIQDIVGILRDFGAQR QRVHKRIQDIVGILRDFGAQREEGRSRSEY R I Q L R D 0 1 0 1 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1025.6233 P46087;F5H5X6;F5GYR3 P46087 243 251 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 1.1998E-11 153.78 2 2 1.0566 1.0719 14.167 4 Median 1.0474 1.2007 0.27397 2 0 Median 1.1005 0.94082 2.6747 2 0 Median 405740000 195840000 209900000 344360000 167430000 176930000 61375000 28410000 32966000 6670 1570 6832 17632;17633;17634;17635 27588;27589;27590;27591;27592;27593;27594;27595 27589 8 IQDLIDDK WFSESGKLVTKMFQKIQDLIDDKDALVFVL VTKMFQKIQDLIDDKDALVFVLIDEVESLT K I Q D K D 0 0 0 3 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 958.49713 Q15645;H0YAL2 Q15645 236 243 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 0.01158 69.598 1 1.4831 1.631 NaN 1 Median 1.4831 1.631 NaN 1 0 Median NaN NaN NaN 0 0 Median 54535000 21936000 32599000 54535000 21936000 32599000 0 0 0 6671 1763 6833 17636 27596;27597 27596 2 IQDPTEDAEAEDTPR DSGNVNGKKRNHTKRIQDPTEDAEAEDTPR IQDPTEDAEAEDTPRKRLRTDKHSLRKRDT R I Q P R K 2 1 0 3 0 1 3 0 0 1 0 0 0 0 2 0 2 0 0 0 0 0 15 0 1685.738 O96028;Q05CW4;H0Y9L4 O96028 532 546 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 5.4568E-07 101.53 2 2 0.8417 0.92148 27.873 3 Median 0.82472 0.87276 7.6832 2 0 Median 1.6728 1.4013 NaN 1 0 Median 74532000 40008000 34524000 68308000 38609000 29699000 6224400 1399000 4825400 6672 1435 6834 17637;17638;17639;17640 27598;27599;27600;27601;27602;27603;27604 27599 7 IQDWYDK KVQALEEANNDLENKIQDWYDKKGPAAIQK ANNDLENKIQDWYDKKGPAAIQKNYSPYYN K I Q D K K 0 0 0 2 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 7 0 966.4447 CON__P35527;P35527 CON__P35527 185 191 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.02887 87.754 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 754300000 754300000 0 726060000 726060000 0 28241000 28241000 0 + 6673 1165 6835 17641;17642;17643;17644 27605;27606;27607;27608;27609;27610 27606 6 IQDYDVSLDK SLILYEEVKPNLTERIQDYDVSLDKALDEL NLTERIQDYDVSLDKALDELMDGDIIVFQK R I Q D K A 0 0 0 3 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1194.5768 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5 Q93009 746 755 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 4.6609E-08 116.52 2 1 0.80572 0.80955 4.9632 3 Median 0.78443 0.78793 6.6619 2 0 Median 1.0178 0.80955 NaN 1 0 Median 40413000 22543000 17871000 37445000 21076000 16369000 2968400 1466400 1501900 6674 1954 6836 17645;17646;17647 27611;27612;27613;27614 27612 4 IQEENVIPR KINGDWQRADAVWNKIQEENVIPREKTLRL DAVWNKIQEENVIPREKTLRLLAEILREGN K I Q P R E 0 1 1 0 0 1 2 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 9 0 1096.5877 E5KNY5;P42704;B4DSR0 E5KNY5 981 989 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00042467 99.442 2 1 1.9808 2.2433 1.7837 2 Median 1.9808 2.2433 1.7837 2 0 Median NaN NaN NaN 0 0 Median 141600000 56836000 84768000 140790000 56024000 84768000 811990 811990 0 6675 1207 6837 17648;17649;17650 27615;27616;27617;27618;27619 27617 5 IQEHFNK VNMVDSKHSMNILNRIQEHFNKKIERLDTD HSMNILNRIQEHFNKKIERLDTDDLDEIEK R I Q N K K 0 0 1 0 0 1 1 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 914.46102 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;Q59FQ9;Q68DY7;B4DL69;Q69YM2;A0A024QZ90;I3L352;B4DS24;Q9HBZ9;Q7Z4W5 I3L0H8 423 429 DDX19A;DDX19B;DKFZp686C21137;hCG_1998531;DKFZp762C1313 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 0.026488 88.029 1 2.42 2.5286 NaN 1 Median 2.42 2.5286 NaN 1 0 Median NaN NaN NaN 0 0 Median 11886000 3473800 8412000 11886000 3473800 8412000 0 0 0 6676 593 6838 17651 27620 27620 1 IQEIIEQLDVTTSEYEK MLLKGKGDKAQIEKRIQEIIEQLDVTTSEY EIIEQLDVTTSEYEKEKLNERLAKLSDGVA R I Q E K E 0 0 0 1 0 2 4 0 0 3 1 1 0 0 0 1 2 0 1 1 0 0 17 0 2037.0154 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7 B7Z597 362 378 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.0036463 52.555 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3813600 0 3813600 3813600 0 3813600 0 0 0 6677 143 6839 17652 27621 27621 1 IQELEDLLAK QLSNLQKESRACLERIQELEDLLAKEKDNS ACLERIQELEDLLAKEKDNSRRMLTDKERE R I Q A K E 1 0 0 1 0 1 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1170.6496 P20700;E9PBF6;Q6DC98;B4DZT3 P20700 321 330 LMNB1 Lamin-B1 yes no 2 4.9722E-10 135.86 3 2 1.0831 1.039 20.951 4 Median 1.0831 1.2264 1.8632 2 0 Median 1.0734 0.85729 5.612 2 0 Median 247330000 111960000 135370000 222410000 99659000 122750000 24927000 12301000 12626000 6678 1502 6840 17653;17654;17655;17656;17657 27622;27623;27624;27625;27626;27627;27628;27629;27630 27622 9 IQELEMQAR RQKKLEHANRHLLLRIQELEMQARAHGLSL RHLLLRIQELEMQARAHGLSLIPSTGLCSP R I Q A R A 1 1 0 0 0 2 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1116.5597 A0A0H3W5T2;B4DNC7;A8K5K3;O75030;B1AKB5;A0A024RCY3;B4DPL3;B0QYS6;B0QYS7;P19484 A0A0H3W5T2 274 282 MITF;TFEB Microphthalmia-associated transcription factor;Transcription factor EB yes no 2 0.0058876 60.91 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6679 536 6841 17658 27631 27631 396 1 IQELENLPGSLAGDLR LQEREYRLQARIAHRIQELENLPGSLAGDL QELENLPGSLAGDLRTKATIELKALRLLNF R I Q L R T 1 1 1 1 0 1 2 2 0 1 4 0 0 0 1 1 0 0 0 0 0 0 16 0 1723.9105 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;A5D6X0 A7E2E1 382 397 SMARCA4 Transcription activator BRG1 yes no 2 9.5761E-34 155.66 1 2 1.8697 1.5713 54.441 3 Median 0.55054 0.61242 NaN 1 0 Median 1.8951 1.5724 0.10142 2 0 Median 107530000 59360000 48171000 76640000 48811000 27828000 30891000 10549000 20343000 6680 695 6842 17659;17660;17661 27632;27633;27634;27635;27636;27637 27632 6 IQELENLPGSLPPDLR LQEREYRLQARIAHRIQELENLPGSLPPDL QELENLPGSLPPDLRTKATVELKALRLLNF R I Q L R T 0 1 1 1 0 1 2 1 0 1 4 0 0 0 3 1 0 0 0 0 0 0 16 0 1789.9574 P51531;A0A0U1RQZ9;F6VDE0 P51531 358 373 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.00023516 76.073 1 0.88488 0.8803 NaN 1 Median 0.88488 0.8803 NaN 1 0 Median NaN NaN NaN 0 0 Median 7212500 4079400 3133100 7212500 4079400 3133100 0 0 0 6681 1595 6843 17662 27638;27639;27640 27638 3 IQETQAELPR LDTNKSRFVDFQKVRIQETQAELPRGSIPR FQKVRIQETQAELPRGSIPRSLEVILRAEA R I Q P R G 1 1 0 0 0 2 2 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 10 0 1183.6197 Q14566;Q4ZG57 Q14566 208 217 MCM6 DNA replication licensing factor MCM6 yes no 2 1.444E-05 101.9 1 1 1.4047 1.3373 59.236 2 Median 1.9631 2.033 NaN 1 0 Median 1.0051 0.87965 NaN 1 0 Median 24915000 7595100 17320000 23080000 6766900 16313000 1835400 828210 1007200 6682 1734 6844 17663;17664 27641;27642 27641 2 IQEVADELQK TQGLIFVVDSNDRERIQEVADELQKMLLVD NDRERIQEVADELQKMLLVDELRDAVLLLF R I Q Q K M 1 0 0 1 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1171.6085 P18085;C9JPM4;C9JAK5 P18085 100 109 ARF4 ADP-ribosylation factor 4 yes no 2 0.00011413 95.358 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54903000 0 54903000 54903000 0 54903000 0 0 0 6683 1498 6845 17665 27643 27643 1 IQFENNEDQDVNPLK FKVCLRTPHLEKRYKIQFENNEDQDVNPLK IQFENNEDQDVNPLKLGLLTWIEEDVFLAV K I Q L K L 0 0 3 2 0 2 2 0 0 1 1 1 0 1 1 0 0 0 0 1 0 0 15 0 1801.8483 Q8N516;Q4LE38;O95163;F5H2T0;B3KXE7;B4E3I9;Q68DI5 Q8N516 488 502 IKBKAP;IKBKAP variant protein;DKFZp781H1425 Elongator complex protein 1 yes no 2 1.6187E-05 88.338 1 1.3871 1.3847 NaN 1 Median 1.3871 1.3847 NaN 1 0 Median NaN NaN NaN 0 0 Median 14265000 6165200 8099900 14265000 6165200 8099900 0 0 0 6684 1419 6846 17666 27644;27645;27646 27644 3 IQFKPDDGISPER NGEMIKKIQNDAGVRIQFKPDDGISPERAA VRIQFKPDDGISPERAAQVMGPPDRCQHAA R I Q E R A 0 1 0 2 0 1 1 1 0 2 0 1 0 1 2 1 0 0 0 0 0 0 13 1 1500.7573 A0A024R8A7;Q96I24 A0A024R8A7 287 299 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 3 0.0019715 59.607 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6685 245 6847 17667 27647 27647 1 IQGLTVEQAEAVVR LRGNEIVLSAGSTPRIQGLTVEQAEAVVRL RIQGLTVEQAEAVVRLSCLPAFKDLIAKVQ R I Q V R L 2 1 0 0 0 2 2 1 0 1 1 0 0 0 0 0 1 0 0 3 0 0 14 0 1511.8308 Q14204 Q14204 3924 3937 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00011216 83.182 1 1 1.6124 1.4866 51.508 2 Median 2.1337 2.1398 NaN 1 0 Median 1.2185 1.0328 NaN 1 0 Median 20815000 7250200 13565000 17752000 5428900 12323000 3063300 1821300 1242000 6686 1729 6848 17668;17669 27648;27649 27648 2 IQIASESSGIPERPCVLTGTPESIEQAK GGEQISRIQAESGCKIQIASESSGIPERPC PCVLTGTPESIEQAKRLLGQIVDRCRNGPG K I Q A K R 2 1 0 0 1 2 4 2 0 4 1 1 0 0 3 4 2 0 0 1 0 0 28 1 2996.5125 A0A024R8A7;Q96I24 A0A024R8A7 111 138 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 3 0.00052506 30.337 1 1.394 1.5151 NaN 1 Median 1.394 1.5151 NaN 1 0 Median NaN NaN NaN 0 0 Median 15710000 6580300 9129900 15710000 6580300 9129900 0 0 0 6687 245 6849 17670 27650;27651;27652 27651 3 IQIEAIPLALQGR LCEACDQLGWTKPTKIQIEAIPLALQGRDI TKIQIEAIPLALQGRDIIGLAETGSGKTGA K I Q G R D 2 1 0 0 0 2 1 1 0 3 2 0 0 0 1 0 0 0 0 0 0 0 13 0 1420.8402 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;B4DYP6 Q53GJ1 43 55 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 7.257E-14 134.84 2 2 1.0869 1.1037 8.4147 4 Median 1.0354 1.1724 3.0794 2 0 Median 1.1857 1.0256 4.8997 2 0 Median 238560000 114190000 124370000 151870000 74916000 76951000 86691000 39277000 47414000 6688 313 6850 17671;17672;17673;17674 27653;27654;27655;27656;27657;27658;27659;27660 27656 8 IQINQEEER ILDDTEDTVVSQRKKIQINQEEERLKNERT VSQRKKIQINQEEERLKNERTVFVGNLPVT K I Q E R L 0 1 1 0 0 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 1157.5677 P42696;A2A2V2;Q5TCT4 P42696 172 180 RBM34 RNA-binding protein 34 yes no 2 8.384E-12 156.62 2 2 0.82993 0.78928 20.351 4 Median 0.85124 0.95674 7.3133 2 0 Median 0.81993 0.67796 1.6021 2 0 Median 181530000 94375000 87158000 161990000 83811000 78181000 19541000 10564000 8977200 6689 1566 6851 17675;17676;17677;17678 27661;27662;27663;27664;27665;27666 27663 6 IQIPRPDDPSNQIK NGEKLQDLELKTATKIQIPRPDDPSNQIKI KIQIPRPDDPSNQIKITGTKEGIEKARHEV K I Q I K I 0 1 1 2 0 2 0 0 0 3 0 1 0 0 3 1 0 0 0 0 0 0 14 1 1619.8631 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H0Y394;C9J5E5;C9JIZ1;H7C0A4;Q5HYC5 A0A024R4E5 184 197 HDLBP;DKFZp686L08115 Vigilin yes no 3 0.0085334 33.204 1 2.0673 2.3649 NaN 1 Median 2.0673 2.3649 NaN 1 0 Median NaN NaN NaN 0 0 Median 22099000 6604700 15495000 22099000 6604700 15495000 0 0 0 6690 154 6852 17679 27667 27667 1 IQIVGLTELQSLAVGPR FCNSKPHDELLQNNRIQIVGLTELQSLAVG IVGLTELQSLAVGPRVFQYGVKVVLQAMYL R I Q P R V 1 1 0 0 0 2 1 2 0 2 3 0 0 0 1 1 1 0 0 2 0 0 17 0 1793.0411 K7EPU3;Q9BT22 K7EPU3 83 99 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase yes no 2 6.5749E-18 128.31 2 1.0635 1.0803 6.4498 2 Median 1.0635 1.0803 6.4498 2 0 Median NaN NaN NaN 0 0 Median 25789000 12798000 12991000 25789000 12798000 12991000 0 0 0 6691 1344 6853 17680;17681 27668;27669;27670;27671;27672 27668 5 IQLEEYSNTR APNEFDVMFKLEVPRIQLEEYSNTRAYYFV LEVPRIQLEEYSNTRAYYFVKFKRNPKENP R I Q T R A 0 1 1 0 0 1 2 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1251.6095 Q8N884 Q8N884 237 246 MB21D1 Cyclic GMP-AMP synthase yes yes 2 3.1669E-10 136.63 2 2 1.589 1.5666 15.799 4 Median 1.546 1.8104 5.8702 2 0 Median 1.601 1.3875 2.5736 2 0 Median 707610000 286080000 421540000 602680000 244870000 357810000 104930000 41206000 63724000 6692 1914 6854 17682;17683;17684;17685 27673;27674;27675;27676;27677;27678;27679;27680 27675 8 IQLIFER QAYIDFEMKIGDPARIQLIFERALVENCLV MKIGDPARIQLIFERALVENCLVPDLWIRY R I Q E R A 0 1 0 0 0 1 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 7 0 917.53345 Q15020;B4DRG9;F8VV04;B4E3R6 Q15020 329 335 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.010142 120.65 2 2.4099 2.7657 NaN 1 Median 2.4099 2.7657 NaN 1 0 Median NaN NaN NaN 0 0 Median 55748000 17033000 38715000 55748000 17033000 38715000 0 0 0 6693 1748 6855 17686;17687 27681;27682;27683;27684 27683 4 IQLLVFK AKLAGFLDLTEQEFRIQLLVFKHKMKNLVW DLTEQEFRIQLLVFKHKMKNLVWTSGISAL R I Q F K H 0 0 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 859.55312 Q8N7H0;B3KNG0;B0QY90;B4DQF6;B3KPB9;B0QY89;Q9Y262;Q7Z5X3 Q8N7H0 221 227 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.035117 65.672 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3679800 0 3679800 3679800 0 3679800 0 0 0 6694 806 6856 17688 27685 27685 1 IQLPVVSK LSTCLFGRGIECDIRIQLPVVSKQHCKIEI GIECDIRIQLPVVSKQHCKIEIHEQEAILH R I Q S K Q 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 2 0 0 8 0 882.55385 P46013 P46013 39 46 MKI67 Antigen KI-67 yes yes 2 0.0012436 110.81 3 2 2.5352 2.4067 18.219 4 Median 1.8398 2.0579 1.0969 2 0 Median 3.5015 2.8201 1.378 2 0 Median 177530000 56374000 121160000 131960000 46159000 85799000 45576000 10215000 35361000 6695 1569 6857 17689;17690;17691;17692;17693 27686;27687;27688;27689;27690;27691;27692;27693;27694;27695;27696;27697;27698;27699;27700 27693 15 IQLQIQETLQR GEFLHELEEKMEVARIQLQIQETLQRQYSH EVARIQLQIQETLQRQYSHHSSVQDAVSQL R I Q Q R Q 0 1 0 0 0 4 1 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1368.7725 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1115 1125 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.0055447 72.275 1 1 1.345 1.3168 8.4999 2 Median 1.2201 1.3983 NaN 1 0 Median 1.4828 1.2399 NaN 1 0 Median 177980000 73143000 104840000 174200000 71627000 102570000 3782300 1516100 2266200 6696 39 6858 17694;17695 27701;27702;27703 27702 3 IQLSSLIAAFQVTR MADIEYRLSVGTNEKIQLSSLIAAFQVTRD KIQLSSLIAAFQVTRDLIVAEA________ K I Q T R D 2 1 0 0 0 2 0 0 0 2 2 0 0 1 0 2 1 0 0 1 0 0 14 0 1545.8879 Q6LES9;A8K3S0;Q59GW7;P40937;A8K4Z2 Q6LES9 320 333 RFC5 Replication factor C subunit 5 yes no 2 3.4077E-06 102.62 2 1.1583 1.179 5.4863 2 Median 1.1583 1.179 5.4863 2 0 Median NaN NaN NaN 0 0 Median 24603000 10679000 13924000 24603000 10679000 13924000 0 0 0 6697 726 6859 17696;17697 27704;27705;27706;27707 27707 4 IQLVEEELDR AREQAEAEVASLNRRIQLVEEELDRAQERL SLNRRIQLVEEELDRAQERLATALQKLEEA R I Q D R A 0 1 0 1 0 1 3 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1242.6456 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;A0A087WWU8;D6R904;J3KN67;M1VPF4;P06753;H0YL80;K7EP68;H0YKP3;B4DTK3;C9IZA2;B4DVY2;V9HW56;P67936;B4DTB1;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951;K7ERG3;K7ENT6;B4DGC2;Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;Q59GR8;H0YKX5;Q8TCG4;H0YNC7;Q15657;H0YL52;D9YZV5;D9YZV4;A0A0S2Z4G6;A0A0K0K1I0;A0A024R5W6;Q6ZN40;P09493 Q5HYB6 56 65 DKFZp686J1372;TPM3;TPM3-ROS1;TPM1;TPM4;HEL-S-108;HEL-S-273;TPM2;TPM2b Tyrosine-protein kinase receptor;Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain no no 2 1.2373E-29 156.92 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38124000 0 38124000 38124000 0 38124000 0 0 0 + 6698 562;1043;1094 6860 17698;17699;17700 27708;27709;27710 27709 3 IQNWLSAK ESKSSWPASTQEGLRIQNWLSAKVRKQLRL STQEGLRIQNWLSAKVRKQLRLKPFYLVPK R I Q A K V 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 0 8 0 958.52362 Q8N884 Q8N884 340 347 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.0073633 83.265 2 2 1.4206 1.3583 3.8594 4 Median 1.2413 1.3857 0.19866 2 0 Median 1.6289 1.3053 2.9865 2 0 Median 137360000 59341000 78015000 115130000 50878000 64252000 22226000 8463400 13763000 6699 1914 6861 17701;17702;17703;17704 27711;27712;27713;27714;27715;27716;27717 27715 7 IQPGSQQADFLDALIVSMDVIQHETIGK LMLPDFDLLEDIESKIQPGSQQADFLDALI LIVSMDVIQHETIGKKFEKRHIEIFTDLSS K I Q G K K 2 0 0 3 0 4 1 2 1 4 2 1 1 1 1 2 1 0 0 2 0 0 28 0 3052.5539 P13010;Q53TC2;C9JZ81 P13010 98 125 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 1.1165E-66 151.12 2 0.64224 0.7577 9.6498 2 Median 0.64224 0.7577 9.6498 2 0 Median NaN NaN NaN 0 0 Median 892220000 539900000 352320000 892220000 539900000 352320000 0 0 0 6700 1476 6862 17705;17706 27718;27719;27720;27721;27722 27722 1221 5 IQPVHILTSVSSLR LERTEILNQEWKQRRIQPVHILTSVSSLRG RIQPVHILTSVSSLRGTRECSVTSDLDFPT R I Q L R G 0 1 0 0 0 1 0 0 1 2 2 0 0 0 1 3 1 0 0 2 0 0 14 0 1548.8988 A0A090N8E9;Q15910;F2YMM1;S4S3R8;B7Z8K5;Q6R125;G3XAL2;Q59H64;E9PDH6 A0A090N8E9 65 78 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 5.6761E-05 57.328 2 2 1.2959 1.2204 25.177 4 Median 0.9809 1.0373 8.6534 2 0 Median 1.8729 1.5306 17.696 2 0 Median 93667000 41066000 52601000 69849000 34234000 35615000 23818000 6832300 16986000 6701 456 6863 17707;17708;17709;17710 27723;27724;27725;27726;27727;27728;27729;27730 27725 7 IQQILTSTGFSDK VHNIIIPEDFSIADKIQQILTSTGFSDKRA DKIQQILTSTGFSDKRARSMDIDDFIRLLH K I Q D K R 0 0 0 1 0 2 0 1 0 2 1 1 0 1 0 2 2 0 0 0 0 0 13 0 1436.7511 A8K9K8;Q9UNQ2 A8K9K8 276 288 DIMT1 Probable dimethyladenosine transferase yes no 2 6.7586E-09 118.4 2 2 1.0329 0.92909 12.382 4 Median 0.83163 0.8378 4.3822 2 0 Median 1.2699 1.0291 4.2129 2 0 Median 73830000 39223000 34608000 57749000 32007000 25742000 16082000 7216200 8865700 6702 786 6864 17711;17712;17713;17714 27731;27732;27733;27734;27735;27736;27737;27738;27739;27740 27732 10 IQQLPDHFGPGPVNVVLR VNKHGNFGPHLDPKRIQQLPDHFGPGPVNV LPDHFGPGPVNVVLRRIVQACVDCALETKT R I Q L R R 0 1 1 1 0 2 0 2 1 1 2 0 0 1 3 0 0 0 0 3 0 0 18 0 1985.0847 Q9UQR0;B4DZR9;B4DRC2 Q9UQR0 376 393 SCML2 Sex comb on midleg-like protein 2 yes no 3 1.941E-05 54.073 2 0.61393 0.61785 6.3915 2 Median 0.61393 0.61785 6.3915 2 0 Median NaN NaN NaN 0 0 Median 33036000 21793000 11242000 33036000 21793000 11242000 0 0 0 6703 2118 6865 17715;17716 27741;27742 27741 2 IQQLQEILQDLQK LIHSLGKSTTDNDVRIQQLQEILQDLQKRL VRIQQLQEILQDLQKRLESSEAERKQLQVE R I Q Q K R 0 0 0 1 0 5 1 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 13 0 1595.8883 Q9P0K7;B4DNL3 Q9P0K7 431 443 RAI14 Ankycorbin yes no 2 6.235E-06 104.82 1 1 1.6665 1.6821 NaN 1 Median 1.6665 1.6821 NaN 1 0 Median NaN NaN NaN 0 0 Median 9394200 1858800 7535400 8097300 1858800 6238500 1296900 0 1296900 6704 2093 6866 17717;17718 27743;27744 27743 2 IQQNTFTR PATEKDLAEDAPWKKIQQNTFTRWCNEHLK EDAPWKKIQQNTFTRWCNEHLKCVSKRIAN K I Q T R W 0 1 1 0 0 2 0 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 8 0 1006.5196 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98;O75369;A0A024R321 P21333 44 51 FLNA;FLNB Filamin-A;Filamin-B no no 2 1.1313E-05 145.63 1 2 2.5614 2.1908 14.604 3 Median 1.7018 1.8235 NaN 1 0 Median 2.7085 2.3089 7.425 2 0 Median 33311000 11766000 21545000 25184000 9228800 15955000 8127200 2537100 5590200 6705 1504;1402 6867 17719;17720;17721 27745;27746;27747;27748;27749 27745 5 IQQQFSDLK REKEEIEKYRMERPKIQQQFSDLKRKLAEV RMERPKIQQQFSDLKRKLAEVTEEEWLSIP K I Q L K R 0 0 0 1 0 3 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1105.5768 O94906 O94906 138 146 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 2.0667E-07 123.72 2 1 0.88288 0.80139 14.536 2 Median 0.87223 0.88815 NaN 1 0 Median 0.89366 0.72311 NaN 1 0 Median 35940000 27620000 8319300 34020000 26565000 7455400 1919300 1055400 863920 6706 1418 6868 17722;17723;17724 27750;27751;27752 27751 3 IQQSLSNPLSISLTDR MNVNCNSVPHVSKERIQQSLSNPLSISLTD QQSLSNPLSISLTDRKTELLSGENMDLTES R I Q D R K 0 1 1 1 0 2 0 0 0 2 3 0 0 0 1 4 1 0 0 0 0 0 16 0 1770.9476 Q8NG31;E9PPJ1 Q8NG31 573 588 CASC5 Protein CASC5 yes no 2 7.6391E-05 81.431 2 2 0.97431 0.8928 20.069 4 Median 0.74396 0.74534 14.101 2 0 Median 1.1823 1.0164 6.9026 2 0 Median 27199000 15007000 12192000 19135000 11197000 7937800 8063900 3809600 4254300 6707 1928 6869 17725;17726;17727;17728 27753;27754;27755;27756;27757;27758;27759;27760 27756 8 IQSALEEESVFAVTAVNASEK EMVTWRLLASLYRDRIQSALEEESVFAVTA EESVFAVTAVNASEKTVVEALFQRDSLVRQ R I Q E K T 4 0 1 0 0 1 4 0 0 1 1 1 0 1 0 3 1 0 0 3 0 0 21 0 2221.1114 P57740 P57740 230 250 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.027345 22.365 1 1.1226 0.88751 NaN 1 Median NaN NaN NaN 0 0 Median 1.1226 0.88751 NaN 1 0 Median 3941400 1750600 2190800 0 0 0 3941400 1750600 2190800 6708 1621 6870 17729 27761 27761 1 IQSGLGALSR GLARRQGGLAGSVRRIQSGLGALSRSHDTT GSVRRIQSGLGALSRSHDTTSNTLAQLLAK R I Q S R S 1 1 0 0 0 1 0 2 0 1 2 0 0 0 0 2 0 0 0 0 0 0 10 0 1000.5665 E9PIE3;Q969G5 E9PIE3 60 69 PRKCDBP Protein kinase C delta-binding protein yes no 2 0.001038 77.192 1 0.82713 0.83988 NaN 1 Median 0.82713 0.83988 NaN 1 0 Median NaN NaN NaN 0 0 Median 29110000 15222000 13888000 29110000 15222000 13888000 0 0 0 6709 1239 6871 17730 27762 27762 1 IQSIYLER NAVSLFQVDGKTNPKIQSIYLERFPIFKAC DGKTNPKIQSIYLERFPIFKACFSANGEEV K I Q E R F 0 1 0 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 0 8 0 1020.5604 B2RAX6;Q9Y5J1 B2RAX6 264 271 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 2.4274E-05 139.97 2 1 0.88277 1.0053 6.4061 3 Median 0.86696 0.99077 2.0635 2 0 Median 1.3368 1.1038 NaN 1 0 Median 285560000 156210000 129350000 266550000 148490000 118060000 19009000 7719800 11289000 6710 876 6872 17731;17732;17733 27763;27764;27765;27766 27763 4 IQSLLDIQEK LRIHQGEHFREVMKRIQSLLDIQEKEFEKF EVMKRIQSLLDIQEKEFEKFKFAIVMMGRH R I Q E K E 0 0 0 1 0 2 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1185.6605 Q93009;B7ZAX6;Q6U8A4;B7Z855 Q93009 1024 1033 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0032911 77.14 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1497700 0 1497700 0 0 0 1497700 0 1497700 6711 1954 6873 17734 27767 27767 1 IQSQFTDAQK NSQGSEMFGDDDKRKIQSQFTDAQKHYQTL DDKRKIQSQFTDAQKHYQTLVIQLPGYPQH K I Q Q K H 1 0 0 1 0 3 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 10 0 1164.5775 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 608 617 DSP;DSP variant protein Desmoplakin yes no 2 8.0851E-05 97.965 1 0.53838 0.58399 NaN 1 Median 0.53838 0.58399 NaN 1 0 Median NaN NaN NaN 0 0 Median 22383000 14221000 8161900 22383000 14221000 8161900 0 0 0 6712 1486 6874 17735 27768 27768 1 IQTLPNQNQSQTQPLLK ATYNPNMPFKWNAQRIQTLPNQNQSQTQPL TLPNQNQSQTQPLLKTPPAVLQPIAPQTTF R I Q L K T 0 0 2 0 0 5 0 0 0 1 3 1 0 0 2 1 2 0 0 0 0 0 17 0 1950.0534 F5H3E1;F5H1H2;F5H2E6;A0A0C4DGG8;Q8IX12 F5H3E1 205 221 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.00094691 44.299 2 1.4552 1.4513 0.41277 2 Median 1.4552 1.4513 0.41277 2 0 Median NaN NaN NaN 0 0 Median 16705000 5886200 10818000 16705000 5886200 10818000 0 0 0 6713 514 6875 17736;17737 27769;27770;27771 27771 3 IQTLTSSVR FLFRKKKEEVPEFTKIQTLTSSVRESSFVE VPEFTKIQTLTSSVRESSFVEKMKKTGRNI K I Q V R E 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 2 2 0 0 1 0 0 9 0 1003.5662 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;E7EWU0 B2R6E5 60 68 POR NADPH--cytochrome P450 reductase yes no 2 0.00080297 99.442 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6714 719 6876 17738 27772 27772 1 IQTQPGYANTLR FADIALAPMEAAKVRIQTQPGYANTLRDAA KVRIQTQPGYANTLRDAAPKMYKEEGLKAF R I Q L R D 1 1 1 0 0 2 0 1 0 1 1 0 0 0 1 0 2 0 1 0 0 0 12 0 1360.7099 F8VVM2;Q8NCF7;Q53HC3;B2RE88;A0A024RBE8;A0A024RBH9;Q00325 F8VVM2 189 200 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 2.5884E-08 119.53 1 1 1.5892 1.4824 22.122 2 Median 1.2455 1.2678 NaN 1 0 Median 2.0277 1.7335 NaN 1 0 Median 34445000 11057000 23388000 29936000 9763200 20173000 4509300 1293800 3215500 6715 335 6877 17739;17740 27773;27774;27775;27776 27774 4 IQVLQQQADDAEER ______________________________ KIQVLQQQADDAEERAERLQREVEGERRAR K I Q E R A 2 1 0 2 0 4 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 14 0 1641.7958 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;Q8NAG3;B4DWT5;Q5VU61;A0A087WWU8;D6R904;D6RFM2 Q5HYB6 14 27 DKFZp686J1372;TPM3 yes no 2 9.2129E-15 134.98 2 1 2.3615 2.6272 24.455 3 Median 2.4357 2.6853 3.0925 2 0 Median 2.1227 1.7611 NaN 1 0 Median 112470000 36217000 76256000 107260000 34563000 72692000 5217400 1653400 3564100 6716 562 6878 17741;17742;17743 27777;27778;27779;27780;27781;27782 27777 6 IQVLQQQADDAEERAER ______________________________ VLQQQADDAEERAERLQREVEGERRAREQA K I Q E R L 3 2 0 2 0 4 3 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 17 1 1997.9766 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;Q8NAG3;B4DWT5;Q5VU61;A0A087WWU8;D6R904;D6RFM2 Q5HYB6 14 30 DKFZp686J1372;TPM3 yes no 3 0.054404 30.536 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1203200 0 1203200 0 0 0 1203200 0 1203200 6717 562 6879 17744 27783 27783 1 IQVQLCFK RERLPTTAQQEDPEKIQVQLCFKTCSPESQ QQEDPEKIQVQLCFKTCSPESQQIYGDIKD K I Q F K T 0 0 0 0 1 2 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 1034.5583 Q4VC44;I3L188;J3KNW1;B3KRZ0;B3KPY2;B3KP60;I3L1A7;I3L287 Q4VC44 686 693 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 0.0069463 93.262 1 2 1.3461 1.1415 4.7194 3 Plateau 1.0989 1.1415 NaN 1 0 Median 1.3503 1.0529 0.99917 2 0 Median 22032000 11061000 10972000 14849000 8141200 6708000 7182900 2919300 4263600 6718 1781 6880 17745;17746;17747 27784;27785;27786;27787 27786 4 IQVTPPGFQLVFLPFADDK FVALVPQEEELDDQKIQVTPPGFQLVFLPF PPGFQLVFLPFADDKRKMPFTEKIMATPEQ K I Q D K R 1 0 0 2 0 2 0 1 0 1 2 1 0 3 3 0 1 0 0 2 0 0 19 0 2131.1354 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 425 443 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 3.3042E-41 143.67 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 488640000 488640000 0 488640000 488640000 0 0 0 0 6719 82 6881 17748;17749 27788;27789 27789 2 IQVTPPGFQLVFLPFADDKR FVALVPQEEELDDQKIQVTPPGFQLVFLPF PGFQLVFLPFADDKRKMPFTEKIMATPEQV K I Q K R K 1 1 0 2 0 2 0 1 0 1 2 1 0 3 3 0 1 0 0 2 0 0 20 1 2287.2365 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 425 444 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 3 4.8485E-08 85.737 1 0.37072 0.42408 NaN 1 Median 0.37072 0.42408 NaN 1 0 Median NaN NaN NaN 0 0 Median 22052000 16263000 5789500 22052000 16263000 5789500 0 0 0 6720 82 6882 17750 27790 27790 1 IQVWLYEQVNMR QPINLIFRYLQNRSRIQVWLYEQVNMRIEG RSRIQVWLYEQVNMRIEGCIIGFDEYMNLV R I Q M R I 0 1 1 0 0 2 1 0 0 1 1 0 1 0 0 0 0 1 1 2 0 0 12 0 1577.8024 P62304 P62304 31 42 SNRPE Small nuclear ribonucleoprotein E yes yes 2 0.00038095 75.387 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6664100 0 6664100 6664100 0 6664100 0 0 0 6721 1642 6883 17751;17752 27791;27792 27792 1421 2 IRDSEYEIQR SEGQERKPSGSSQNRIRDSEYEIQRQAKKS SSQNRIRDSEYEIQRQAKKSFSTLFLETVK R I R Q R Q 0 2 0 1 0 1 2 0 0 2 0 0 0 0 0 1 0 0 1 0 0 0 10 1 1307.647 Q03188;H0Y8J2 Q03188 247 256 CENPC Centromere protein C yes no 2;3 0.0015684 88.495 3 1 0.66573 0.72514 42.856 3 Median 0.61025 0.64711 16.1 2 0 Median 1.4645 1.3236 NaN 1 0 Median 38276000 24666000 13610000 35317000 23377000 11940000 2959300 1289100 1670200 6722 1681 6884 17753;17754;17755;17756 27793;27794;27795;27796 27793 4 IREEFPDR GGGTGSGMGTLLISKIREEFPDRIMNTFSV GTLLISKIREEFPDRIMNTFSVVPSPKVSD K I R D R I 0 2 0 1 0 0 2 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 8 1 1060.5302 M0R042;M0QYM7;P04350;B4DE77;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386;K7ES63 P04350 155 162 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain no no 3 0.024542 38.303 1 1.3089 1.3669 NaN 1 Median 1.3089 1.3669 NaN 1 0 Median NaN NaN NaN 0 0 Median 13435000 5608500 7826400 13435000 5608500 7826400 0 0 0 6723 1441;2004;1353 6885 17757 27797 27797 1 IREEYPDR GGGTGSGMGTLLISKIREEYPDRIMNTFSV GTLLISKIREEYPDRIMNTFSVVPSPKVSD K I R D R I 0 2 0 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 8 1 1076.5251 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q1KSF8;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2;A5D907;A5D906;A1L195;A6NNZ2;A1L196;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00 Q5JP53 137 144 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB2A;TUBB2B;DKFZp566F223;TUBB1;TUBB8 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-8 chain no no 2;3 1.0431E-21 168.26 4 2 1.5145 1.8565 27.189 6 Plateau 1.5193 1.8694 10.158 4 0 Linear 1.1074 1.0292 4.6045 2 0 Median 1843200000 723980000 1119200000 1787700000 697500000 1090200000 55423000 26479000 28944000 6724 1452;1660;1723;1778 6886 17758;17759;17760;17761;17762;17763 27798;27799;27800;27801;27802;27803;27804;27805;27806 27804 9 IRELESQISELQEDLESER RVEEEAAQKNMALKKIRELESQISELQEDL ESQISELQEDLESERASRNKAEKQKRDLGE K I R E R A 0 2 0 1 0 2 6 0 0 2 3 0 0 0 0 3 0 0 0 0 0 0 19 1 2302.1288 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;Q99529 A0A024R1N1 1106 1124 MYH9 Myosin-9 yes no 3 3.5569E-17 107.18 2 2 1.8022 1.8996 2.61 3 Median 1.7036 1.912 3.6528 2 0 Median 2.2976 1.8996 NaN 1 0 Median 203690000 61707000 141980000 146030000 54427000 91606000 57657000 7280500 50377000 6725 81 6887 17764;17765;17766;17767 27807;27808;27809;27810;27811;27812;27813;27814 27814 8 IRELTAVVQK LATRTQNVLGEKGRRIRELTAVVQKRFGFP EKGRRIRELTAVVQKRFGFPEGSVELYAEK R I R Q K R 1 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 10 1 1155.6976 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;A7E2S3;E9PQ96;E9PJH4;E9PK82 P23396 66 75 RPS3 40S ribosomal protein S3 yes no 2 0.038015 57.96 1 1.1302 1.3178 NaN 1 Median 1.1302 1.3178 NaN 1 0 Median NaN NaN NaN 0 0 Median 45071000 19861000 25210000 45071000 19861000 25210000 0 0 0 6726 1511 6888 17768 27815 27815 1 IRGPEESQPPQLYAADEEEAPGTR ______________________________ PQLYAADEEEAPGTRDPTRLRPVYARAGLL R I R T R D 3 2 0 1 0 2 5 2 0 1 1 0 0 0 4 1 1 0 1 0 0 0 24 1 2639.2463 Q5RKV6 Q5RKV6 8 31 EXOSC6 Exosome complex component MTR3 yes yes 3 2.8482E-09 56.947 1 2 0.73379 0.77645 8.2276 3 Plateau 0.72204 0.77645 NaN 1 0 Median 0.74941 0.67712 3.2352 2 0 Median 22218000 10217000 12001000 16258000 7170700 9087500 5959700 3046300 2913400 6727 1814 6889 17769;17770;17771 27816;27817;27818;27819 27817 4 IRGPEESQPPQLYAADEEEAPGTRDPTR ______________________________ AADEEEAPGTRDPTRLRPVYARAGLLSQAK R I R T R L 3 3 0 2 0 2 5 2 0 1 1 0 0 0 5 1 2 0 1 0 0 0 28 2 3108.4748 Q5RKV6 Q5RKV6 8 35 EXOSC6 Exosome complex component MTR3 yes yes 4 0.00049177 31.111 2 0.90287 1.061 5.8986 2 Median NaN NaN NaN 0 0 Median 0.90287 1.061 5.8986 2 0 Median 10202000 4674400 5527300 0 0 0 10202000 4674400 5527300 6728 1814 6890 17772;17773 27820;27821;27822;27823;27824 27820 5 IRIDSLSAQLSQLQK SNLVGAAHEELQQSRIRIDSLSAQLSQLQK IRIDSLSAQLSQLQKQLAAKEAKLRDLEDS R I R Q K Q 1 1 0 1 0 3 0 0 0 2 3 1 0 0 0 3 0 0 0 0 0 0 15 1 1698.9628 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8 P02545 297 311 LMNA Prelamin-A/C;Lamin-A/C yes no 3 0.00010181 64.476 3 2 1.3248 1.4525 8.0277 4 Linear 1.2083 1.4382 1.38 2 0 Median 1.4589 1.2527 0.94629 2 0 Median 234250000 98815000 135430000 197320000 84769000 112550000 36931000 14047000 22884000 6729 1440 6891 17774;17775;17776;17777;17778 27825;27826;27827;27828;27829;27830;27831 27828 6 IRLESEEEGVPSTAIR KGRHKTTGQVVAMKKIRLESEEEGVPSTAI RLESEEEGVPSTAIREISLLKELRHPNIVS K I R I R E 1 2 0 0 0 0 4 1 0 2 1 0 0 0 1 2 1 0 0 1 0 0 16 1 1784.9268 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;A0A024QZJ8;E5RIU6;B7Z3D6 A0A024QZP7 35 50 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 3 7.0897E-05 65.105 2 1 1.2307 1.3893 19.044 3 Plateau 1.2303 1.3816 5.0385 2 0 Median 1.2078 0.99923 NaN 1 0 Median 172470000 77691000 94782000 150270000 67367000 82903000 22203000 10324000 11879000 6730 25 6892 17779;17780;17781 27832;27833;27834;27835;27836 27834 5 IRPLTEAEK VSLMELFKDITPSYKIRPLTEAEKSTKTRK ITPSYKIRPLTEAEKSTKTRKETQKLREFE K I R E K S 1 1 0 0 0 0 2 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 9 1 1055.5975 A8K905;Q8WTT2;B4DXL4 A8K905 275 283 NOC3L Nucleolar complex protein 3 homolog yes no 2;3 0.0016795 101.65 3 1.0219 1.1705 3.1619 3 Median 1.0219 1.1705 3.1619 3 0 Median NaN NaN NaN 0 0 Median 92001000 45264000 46737000 92001000 45264000 46737000 0 0 0 6731 780 6893 17782;17783;17784 27837;27838;27839;27840;27841 27839 5 IRVDFSITK EAKERANGMELDGRRIRVDFSITKRPHTPT ELDGRRIRVDFSITKRPHTPTPGIYMGRPT R I R T K R 0 1 0 1 0 0 0 0 0 2 0 1 0 1 0 1 1 0 0 1 0 0 9 1 1077.6182 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995;H7C2L4;H7BXF3 Q8N1H4 153 161 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2;3 7.2855E-05 123.86 3 1.1243 1.3485 6.0776 3 Plateau 1.1243 1.3485 6.0776 3 0 Plateau NaN NaN NaN 0 0 Median 89363000 39826000 49537000 89363000 39826000 49537000 0 0 0 6732 889 6894 17785;17786;17787 27842;27843;27844;27845;27846 27844 5 IRVDLASETSSR QALKRNGAQIADGFRIRVDLASETSSRDKR GFRIRVDLASETSSRDKRSVFVGNLPYKVE R I R S R D 1 2 0 1 0 0 1 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 12 1 1332.6997 P42696;A2A2V2 P42696 273 284 RBM34 RNA-binding protein 34 yes no 3 0.050627 16.725 1 0.83186 0.75088 NaN 1 Median NaN NaN NaN 0 0 Median 0.83186 0.75088 NaN 1 0 Median 3296400 1800500 1495900 0 0 0 3296400 1800500 1495900 6733 1566 6895 17788 27847 27847 1 IRVDYSITK EAMERANGMELDGRRIRVDYSITKRAHTPT ELDGRRIRVDYSITKRAHTPTPGIYMGRPT R I R T K R 0 1 0 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 1 1 0 0 9 1 1093.6132 Q549U1;Q13595 Q549U1 190 198 HSU53209;TRA2A Transformer-2 protein homolog alpha yes no 2;3 0.0047084 92.051 3 1.3237 1.5233 NaN 1 Median 1.3237 1.5233 NaN 1 0 Median NaN NaN NaN 0 0 Median 56613000 11887000 44725000 56613000 11887000 44725000 0 0 0 6734 1716 6896 17789;17790;17791 27848;27849;27850 27850 3 IRVESLLVTAISK VIDPGFAKQKVYNPRIRVESLLVTAISKAS PRIRVESLLVTAISKASAQQRAGRAGRTRP R I R S K A 1 1 0 0 0 0 1 0 0 2 2 1 0 0 0 2 1 0 0 2 0 0 13 1 1427.8712 O43143;B4E0S6 O43143 451 463 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.0029188 61.48 1 1.182 0.99299 NaN 1 Median NaN NaN NaN 0 0 Median 1.182 0.99299 NaN 1 0 Median 7052600 3085700 3966900 0 0 0 7052600 3085700 3966900 6735 1379 6897 17792 27851 27851 1 IRYESLTDPSK FLRELISNASDALDKIRYESLTDPSKLDSG ALDKIRYESLTDPSKLDSGKELKIDIIPNP K I R S K L 0 1 0 1 0 0 1 0 0 1 1 1 0 0 1 2 1 0 1 0 0 0 11 1 1307.6721 B4DMA2;A0A024RD80;P08238;Q6PK50;Q58FF7;O14942;Q58FF8;K9JA46;P07900;Q2VPJ6;G3V2J8;B4DTA5;Q86SX1;Q58FF6 B4DMA2 54 64 HSP90AB1;HSP90AB3P;HSP90AB2P;EL52;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4 no no 2;3 6.2558E-15 133.89 4 2 2.5341 2.9913 52.199 5 Median 2.694 3.1872 4.2775 3 0 Median 1.4363 1.2143 5.9885 2 0 Median 499910000 122720000 377190000 485260000 116740000 368510000 14651000 5979100 8671500 6736 379;1348;1800;1799 6898 17793;17794;17795;17796;17797;17798 27852;27853;27854;27855;27856;27857;27858 27853 7 ISAILHPSTYLNK EEEYLQLTFDKSVFKISAILHPSTYLNKIL FKISAILHPSTYLNKILLGSEQGSLQLWNV K I S N K I 1 0 1 0 0 0 0 0 1 2 2 1 0 0 1 2 1 0 1 0 0 0 13 0 1455.8086 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 151 163 WDR36 WD repeat-containing protein 36 yes no 2;3 0.00012293 77.662 3 4 1.206 0.97267 8.495 7 Median 0.90132 1.0389 8.628 3 0 Plateau 1.2606 1.0038 7.3211 4 0 Median 231730000 112770000 118970000 176620000 88574000 88044000 55117000 24194000 30923000 6737 486 6899 17799;17800;17801;17802;17803;17804;17805 27859;27860;27861;27862;27863;27864;27865;27866;27867 27862 9 ISANENSLAVR PPGPEVCITHQEGEKISANENSLAVRSTPA EGEKISANENSLAVRSTPAEDDSRDSQVKS K I S V R S 2 1 2 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1172.6149 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2;F8VRN8 F8VQE1 165 175 LIMA1 LIM domain and actin-binding protein 1 yes no 2 1.6117E-40 178.32 2 2 4.995 4.0737 4.7979 2 Median NaN NaN NaN 0 0 Median 4.995 4.0737 4.7979 2 0 Median 134240000 3931200 130310000 110100000 0 110100000 24141000 3931200 20209000 6738 1010 6900 17806;17807;17808;17809 27868;27869;27870;27871;27872 27868 5 ISAPNEFDVMFK GVGLLNTGSYYEHVKISAPNEFDVMFKLEV HVKISAPNEFDVMFKLEVPRIQLEEYSNTR K I S F K L 1 0 1 1 0 0 1 0 0 1 0 1 1 2 1 1 0 0 0 1 0 0 12 0 1396.6697 Q8N884 Q8N884 220 231 MB21D1 Cyclic GMP-AMP synthase yes yes 2 1.7216E-06 111.06 2 5 2.0637 1.7091 36.027 7 Median 2.0754 2.3305 1.4214 2 0 Median 1.9696 1.6261 30.106 5 0 Median 289710000 104380000 185320000 237350000 83859000 153490000 52358000 20525000 31832000 6739 1914 6901;6902 17810;17811;17812;17813;17814;17815;17816 27873;27874;27875;27876;27877;27878;27879;27880;27881;27882;27883;27884 27876 1748 12 ISARDRGRLMYR VAAAKDAFENGRWGKISARDRGRLMYRAPP WGKISARDRGRLMYRAPPSPSTRPDPTAT_ K I S Y R A 1 4 0 1 0 0 0 1 0 1 1 0 1 0 0 1 0 0 1 0 0 0 12 3 1492.8045 A0A0S2Z586;A0A0S2Z527;Q53H87;Q59G10;O75891 A0A0S2Z586 480 491 ALDH1L1 Cytosolic 10-formyltetrahydrofolate dehydrogenase yes no 2 0.016083 40.724 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7740600 7740600 0 7740600 7740600 0 0 0 0 6740 575 6903 17817 27885 27885 430 1 ISASLLDSR DPHHDYCEDWPEAQRISASLLDSRSYETLV WPEAQRISASLLDSRSYETLVDFDNHLDDI R I S S R S 1 1 0 1 0 0 0 0 0 1 2 0 0 0 0 3 0 0 0 0 0 0 9 0 960.52401 M0R1B0;Q53Y03;O43402 M0R1B0 60 68 EMC8;COX4NB ER membrane protein complex subunit 8 yes no 2 6.9093E-06 130.56 1 1 0.82851 0.79267 21.728 2 Median 0.89018 0.92431 NaN 1 0 Median 0.77111 0.67978 NaN 1 0 Median 22406000 10855000 11551000 20780000 9865100 10915000 1625300 989710 635610 6741 1355 6904 17818;17819 27886;27887;27888 27887 3 ISAVSVAER DRAAECNIVVTQPRRISAVSVAERVAFERG VTQPRRISAVSVAERVAFERGEEPGKSCGY R I S E R V 2 1 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 930.51345 Q08211;Q58F26;Q6PJK6 Q08211 448 456 DHX9 ATP-dependent RNA helicase A yes no 2 0.00013706 108.74 2 2 1.3851 1.3785 5.8109 4 Median 1.2439 1.4384 0.078201 2 0 Median 1.5401 1.3033 2.0049 2 0 Median 410940000 187990000 222950000 396220000 182270000 213950000 14720000 5714100 9006300 6742 1691 6905 17820;17821;17822;17823 27889;27890;27891;27892;27893;27894;27895 27892 7 ISAVSVAQR GRGARCNVIITQPRRISAVSVAQRVSHELG ITQPRRISAVSVAQRVSHELGPSLRRNVGF R I S Q R V 2 1 0 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 929.52943 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 466 474 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0067422 63.419 2 1.2902 1.2816 NaN 1 Median 1.2902 1.2816 NaN 1 0 Median NaN NaN NaN 0 0 Median 8722600 4116700 4606000 8722600 4116700 4606000 0 0 0 6743 122 6906 17824;17825 27896;27897 27897 2 ISDIQSQLEK QSKVPLSEFDFSWSKISDIQSQLEKLIEKN FSWSKISDIQSQLEKLIEKNYFLHKSAQEA K I S E K L 0 0 0 1 0 2 1 0 0 2 1 1 0 0 0 2 0 0 0 0 0 0 10 0 1159.6085 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 434 443 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 2.7106E-30 179.8 2 2 1.1995 1.1989 7.1186 4 Median 0.95247 1.1257 2.8303 2 0 Median 1.4867 1.2675 1.8051 2 0 Median 1202200000 584960000 617240000 1059600000 527210000 532440000 142550000 57749000 84804000 6744 303 6907 17826;17827;17828;17829 27898;27899;27900;27901;27902;27903;27904;27905;27906;27907 27900 10 ISDSEGFK QGPPPGGPGGRSEEKISDSEGFKANLSLLR GGRSEEKISDSEGFKANLSLLRRPGEKTYT K I S F K A 0 0 0 1 0 0 1 1 0 1 0 1 0 1 0 2 0 0 0 0 0 0 8 0 881.41306 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 199 206 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.024949 55.531 1 1.9415 1.9015 NaN 1 Median 1.9415 1.9015 NaN 1 0 Median NaN NaN NaN 0 0 Median 21994000 8303000 13691000 21994000 8303000 13691000 0 0 0 6745 1510 6908 17830 27908 27908 1 ISDVIEDSVVEDYNSVDK LFMECEEEELEPWQKISDVIEDSVVEDYNS VIEDSVVEDYNSVDKTTTVSVSQQPVSAPV K I S D K T 0 0 1 4 0 0 2 0 0 2 0 1 0 0 0 3 0 0 1 4 0 0 18 0 2024.9426 Q7Z3K3;A6PW30;E9PJY9;E9PIR8 Q7Z3K3 21 38 POGZ Pogo transposable element with ZNF domain yes no 2 4.455E-05 59.709 1 1 1.4877 1.1798 NaN 1 Median NaN NaN NaN 0 0 Median 1.4877 1.1798 NaN 1 0 Median 4395300 1546700 2848600 0 0 0 4395300 1546700 2848600 6746 1874 6909 17831;17832 27909;27910;27911 27910 3 ISEECIAQWK KPKKKVFEKLQADFKISEECIAQWKQTNFM QADFKISEECIAQWKQTNFMTKLGSISCKS K I S W K Q 1 0 0 0 1 1 2 0 0 2 0 1 0 0 0 1 0 1 0 0 0 0 10 0 1262.5965 A0A0S2Z4R1;P54577 A0A0S2Z4R1 497 506 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes no 2 2.3553E-05 103.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5477000 0 5477000 5477000 0 5477000 0 0 0 6747 567 6910 17833 27912;27913 27912 2 ISEEYFAQTDEEK NPCRPLDLCIEWAGRISEEYFAQTDEEKRQ GRISEEYFAQTDEEKRQGLPVVMPVFDRNT R I S E K R 1 0 0 1 0 1 4 0 0 1 0 1 0 1 0 1 1 0 1 0 0 0 13 0 1587.694 Q3ZCW6;B3KMJ9;B3KN77;O95263;Q3ZCR2 Q3ZCW6 299 311 PDE8B High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8B yes no 2 0.004941 58.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6748 905 6911 17834 27914 27914 1 ISEGTGFR PTRELASQIHRELIKISEGTGFRIHMIHKA IHRELIKISEGTGFRIHMIHKAAVAAKKFG K I S F R I 0 1 0 0 0 0 1 2 0 1 0 0 0 1 0 1 1 0 0 0 0 0 8 0 865.42938 Q9Y2R4;Q59H21;B3KM65 Q9Y2R4 257 264 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 0.019368 65.777 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5856800 5856800 0 5856800 5856800 0 0 0 0 6749 2126 6912 17835 27915 27915 1 ISELEFHTDK HIIRVYFFGSGQPEKISELEFHTDKVDSIQ GQPEKISELEFHTDKVDSIQFSNTSNRFVS K I S D K V 0 0 0 1 0 0 2 0 1 1 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1217.5928 Q8WWQ0 Q8WWQ0 358 367 PHIP PH-interacting protein yes yes 2;3 9.7687E-12 138.98 4 2 0.84273 0.94196 12.698 5 Median 0.82155 0.9391 3.9254 4 0 Median 1.5436 1.2168 NaN 1 0 Median 526140000 277380000 248760000 504650000 270360000 234290000 21489000 7025200 14464000 6750 1942 6913 17836;17837;17838;17839;17840;17841 27916;27917;27918;27919;27920;27921;27922;27923;27924;27925;27926 27922 11 ISELEIINSSFENILQEK EKENLTNELQKEQERISELEIINSSFENIL LEIINSSFENILQEKEQEKVQMKEKSSTAM R I S E K E 0 0 2 0 0 1 4 0 0 4 2 1 0 1 0 3 0 0 0 0 0 0 18 0 2105.0892 P49454 P49454 2504 2521 CENPF Centromere protein F yes yes 2 2.4413E-22 131.32 2 1.3189 1.3369 12.982 2 Median 1.3189 1.3369 12.982 2 0 Median NaN NaN NaN 0 0 Median 19310000 7638700 11672000 19310000 7638700 11672000 0 0 0 6751 1581 6914 17842;17843 27927;27928;27929;27930;27931;27932 27930 6 ISELGAGNGGVVFK QKQKVGELKDDDFEKISELGAGNGGVVFKV KISELGAGNGGVVFKVSHKPSGLVMARKLI K I S F K V 1 0 1 0 0 0 1 4 0 1 1 1 0 1 0 1 0 0 0 2 0 0 14 0 1346.7194 B4DFY5;A4QPA9;Q02750 B4DFY5 49 62 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 2 0.0002368 64.103 1 1.0337 1.1346 NaN 1 Median 1.0337 1.1346 NaN 1 0 Median NaN NaN NaN 0 0 Median 41398000 23287000 18111000 41398000 23287000 18111000 0 0 0 6752 674 6915 17844 27933 27933 1 ISELSLCDLAGSER IRILHLQGEGDIVPKISELSLCDLAGSERC KISELSLCDLAGSERCKDQKSGERLKEAGN K I S E R C 1 1 0 1 1 0 2 1 0 1 3 0 0 0 0 3 0 0 0 0 0 0 14 0 1548.7454 O95235 O95235 401 414 KIF20A Kinesin-like protein KIF20A yes yes 2 8.3805E-31 162.68 2 2 0.92581 0.91602 24.671 4 Median 0.67193 0.74131 6.7823 2 0 Median 1.3039 1.1256 5.988 2 0 Median 172510000 87369000 85145000 93729000 52580000 41149000 78785000 34788000 43996000 6753 1421 6916 17845;17846;17847;17848 27934;27935;27936;27937;27938;27939;27940;27941;27942 27938 9 ISEQFTAMFR TFIGNSTAIQELFKRISEQFTAMFRRKAFL ELFKRISEQFTAMFRRKAFLHWYTGEGMDE R I S F R R 1 1 0 0 0 1 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 0 10 0 1228.591 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCU2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;P04350;B4DE77;B4DJ43;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92 Q5JP53 363 372 TUBB;TUBB2C;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2 5.3523E-23 172.23 4 4 1.3355 1.1596 63.581 7 Median 2.7611 3.2572 65.135 4 0 Linear 1.3355 1.1251 45.952 3 0 Median 702460000 218450000 484020000 680240000 208310000 471930000 22229000 10140000 12088000 6754 1452;1660;1723;1441;502 6917;6918 17849;17850;17851;17852;17853;17854;17855;17856 27943;27944;27945;27946;27947;27948;27949;27950;27951;27952;27953;27954;27955 27946 349 13 ISEQIVIGTPGTVLDWCSK LAYAVRGNKLERGQKISEQIVIGTPGTVLD IVIGTPGTVLDWCSKLKFIDPKKIKVFVLD K I S S K L 0 0 0 1 1 1 1 2 0 3 1 1 0 0 1 2 2 1 0 2 0 0 19 0 2102.0718 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;Q59FQ9;Q68DY7;B4DL69;Q69YM2;A0A024QZ90;I3L352;B4DS24;H3BN59;H3BMQ5 I3L0H8 177 195 DDX19A;DDX19B;DKFZp686C21137;hCG_1998531;DKFZp762C1313 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 0.00012033 64.104 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9148900 0 9148900 9148900 0 9148900 0 0 0 6755 593 6919 17857;17858 27956;27957;27958 27956 3 ISEVVELLK DRLDAIEDLMVVPDKISEVVELLKKLPDLE MVVPDKISEVVELLKKLPDLERLLSKIHNV K I S L K K 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 2 0 0 9 0 1028.6118 P52701;A0A087WWJ1;Q1L838 P52701 805 813 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.0016421 82.75 2 0.80155 0.81458 9.2909 2 Median 0.80155 0.81458 9.2909 2 0 Median NaN NaN NaN 0 0 Median 30450000 17833000 12617000 30450000 17833000 12617000 0 0 0 6756 1601 6920 17859;17860 27959;27960 27960 2 ISEYSEAAITIR QTARWKVTPKEALQRISEYSEAAITIRGTY LQRISEYSEAAITIRGTYFPPGKEPKEGER R I S I R G 2 1 0 0 0 0 2 0 0 3 0 0 0 0 0 2 1 0 1 0 0 0 12 0 1351.6983 A8K6X3;A0A0C4DG89;Q7L014 A8K6X3 959 970 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0095282 66.056 1 1.1306 1.1272 NaN 1 Median 1.1306 1.1272 NaN 1 0 Median NaN NaN NaN 0 0 Median 11653000 5693300 5960100 11653000 5693300 5960100 0 0 0 6757 511 6921 17861 27961 27961 0 ISFDLAEYTADVDGVGTLR KPTEIYNLGAQSHVKISFDLAEYTADVDGV LAEYTADVDGVGTLRLLDAVKTCGLINSVK K I S L R L 2 1 0 3 0 0 1 2 0 1 2 0 0 1 0 1 2 0 1 2 0 0 19 0 2041.0004 B2R9X3;O60547 B2R9X3 116 134 GMDS GDP-mannose 4,6 dehydratase yes no 2 0.0022755 48.704 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2532700 0 2532700 2532700 0 2532700 0 0 0 6758 869 6922 17862 27962;27963 27962 2 ISFGTDYGCCIVELGK KRLDGRQTYDYRNIRISFGTDYGCCIVELG SFGTDYGCCIVELGKTRVLGQVSCELVSPK R I S G K T 0 0 0 1 2 0 1 3 0 2 1 1 0 1 0 1 1 0 1 1 0 0 16 0 1817.8328 B4DXG8;A5PLM5;Q06265;D6RIY6;D6R905;D6RA17;D6RAP4 B4DXG8 37 52 EXOSC9 Exosome complex component RRP45 yes no 2 0.019468 28.976 1 1.0251 0.83543 NaN 1 Median NaN NaN NaN 0 0 Median 1.0251 0.83543 NaN 1 0 Median 6627400 3288600 3338700 0 0 0 6627400 3288600 3338700 6759 675 6923 17863 27964 27964 1 ISFLENNLEQLTK IDSDDTGGSAAQKQKISFLENNLEQLTKVH QKISFLENNLEQLTKVHKQLVRDNADLRCE K I S T K V 0 0 2 0 0 1 2 0 0 1 3 1 0 1 0 1 1 0 0 0 0 0 13 0 1547.8195 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;B4DS27;Q57Z91;A0A0G2JMZ6;A1L179;J3KNA1;B7Z2M7;B2RCP3;O60282;Q12840;Q59GB8;B0I1S7 V9HW29 832 844 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5C;KIF5A Kinesin-like protein;Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 2 1.1492E-20 137.89 3 2 1.1165 0.88805 64.906 3 Median 2.3642 2.3913 NaN 1 0 Median 0.997 0.79106 16.356 2 0 Median 31192000 12358000 18834000 22142000 7574000 14568000 9050000 4783500 4266400 6760 1186 6924 17864;17865;17866;17867;17868 27965;27966;27967;27968;27969;27970;27971 27968 7 ISFVEEDVHPK SPSPGRSPQRLKETRISFVEEDVHPKWIPG KETRISFVEEDVHPKWIPGAADDSKLEVFT R I S P K W 0 0 0 1 0 0 2 0 1 1 0 1 0 1 1 1 0 0 0 2 0 0 11 0 1298.6507 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1231 1241 AHCTF1 Protein ELYS yes no 2;3 0.0037462 64.297 2 1 1.4558 1.6062 34.767 3 Median 1.2897 1.3955 19.88 2 0 Median 3.1023 2.4207 NaN 1 0 Median 80435000 36069000 44366000 76793000 35160000 41633000 3642600 909250 2733400 6761 1945 6925 17869;17870;17871 27972;27973;27974;27975 27975 4 ISGALFTNDK PPKKRGLAPIECYNRISGALFTNDKFQVST ECYNRISGALFTNDKFQVSTNKLTFMDLEL R I S D K F 1 0 1 1 0 0 0 1 0 1 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1064.5502 A6NHR9;J3KRK8 A6NHR9 509 518 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.00074284 81.95 2 0.69253 0.70801 4.2508 2 Median 0.69253 0.70801 4.2508 2 0 Median NaN NaN NaN 0 0 Median 43870000 23181000 20688000 43870000 23181000 20688000 0 0 0 6762 684 6926 17872;17873 27976;27977 27976 2 ISGDLSSEEER EQLEWRSILLDMATRISGDLSSEEERFMKP MATRISGDLSSEEERFMKPKVTMIAWNQND R I S E R F 0 1 0 1 0 0 3 1 0 1 1 0 0 0 0 3 0 0 0 0 0 0 11 0 1220.5521 Q9NSI6;Q5R2U6;H0Y463;Q5R2U9;H0Y500;Q5R2U8;H0Y5I9;Q5R2U5;H0Y4A7;Q5R2U4;H0Y4R9 Q9NSI6 413 423 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.00026225 90.108 2 0.75752 0.77235 4.1425 2 Median 0.75752 0.77235 4.1425 2 0 Median NaN NaN NaN 0 0 Median 30522000 16324000 14198000 30522000 16324000 14198000 0 0 0 6763 2068 6927 17874;17875 27978;27979;27980 27978 3 ISGETIFVTAPHEATAGIIGVNR HLYDLETGTCIYMNRISGETIFVTAPHEAT TAPHEATAGIIGVNRKGQVLSVCVEEENII R I S N R K 3 1 1 0 0 0 2 3 1 4 0 0 0 1 1 1 3 0 0 2 0 0 23 0 2352.2438 A0A087WVQ6;Q00610 A0A087WVQ6 302 324 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 0.038759 12.307 1 1.3381 1.1459 NaN 1 Median NaN NaN NaN 0 0 Median 1.3381 1.1459 NaN 1 0 Median 2850900 1025000 1825900 0 0 0 2850900 1025000 1825900 6764 419 6928 17876 27981;27982 27982 2 ISGLIYEETR KPAIRRLARRGGVKRISGLIYEETRGVLKV GGVKRISGLIYEETRGVLKVFLENVIRDAV R I S T R G 0 1 0 0 0 0 2 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1179.6136 B2R4R0;P62805;Q0VAS5;Q6B823 B2R4R0 47 56 HIST1H4H;HIST1H4A Histone H4 yes no 2 1.3178E-79 218.73 72 11 0.70177 0.72807 52.42 18 Median 0.69142 0.74335 15.549 14 0 Median 0.80166 0.67876 110.88 4 0 Median 18369000000 17796000000 573870000 16373000000 15887000000 486310000 1996600000 1909000000 87551000 6765 828 6929 17877;17878;17879;17880;17881;17882;17883;17884;17885;17886;17887;17888;17889;17890;17891;17892;17893;17894;17895;17896;17897;17898;17899;17900;17901;17902;17903;17904;17905;17906;17907;17908;17909;17910;17911;17912;17913;17914;17915;17916;17917;17918;17919;17920;17921;17922;17923;17924;17925;17926;17927;17928;17929;17930;17931;17932;17933;17934;17935;17936;17937;17938;17939;17940;17941;17942;17943;17944;17945;17946;17947;17948;17949;17950;17951;17952;17953;17954;17955;17956;17957;17958;17959 27983;27984;27985;27986;27987;27988;27989;27990;27991;27992;27993;27994;27995;27996;27997;27998;27999;28000;28001;28002;28003;28004;28005;28006;28007;28008;28009;28010;28011;28012;28013;28014;28015;28016;28017;28018;28019;28020;28021;28022;28023;28024;28025;28026;28027;28028;28029;28030;28031;28032;28033;28034;28035;28036;28037;28038;28039;28040;28041;28042;28043;28044;28045;28046;28047;28048;28049;28050;28051;28052;28053;28054;28055;28056;28057;28058;28059;28060;28061;28062;28063;28064;28065;28066;28067;28068;28069;28070;28071;28072;28073;28074;28075;28076;28077;28078;28079;28080;28081;28082;28083;28084;28085;28086;28087;28088;28089;28090;28091;28092;28093;28094;28095;28096;28097;28098;28099;28100;28101;28102;28103;28104;28105;28106 27996 123 ISGPNPLSCLK LVKNTEQSRRKKRKKISGPNPLSCLKKKKK KRKKISGPNPLSCLKKKKKAPDTQSSASEK K I S L K K 0 0 1 0 1 0 0 1 0 1 2 1 0 0 2 2 0 0 0 0 0 0 11 0 1184.6223 Q9BRU9 Q9BRU9 199 209 UTP23 rRNA-processing protein UTP23 homolog yes yes 2 0.001099 70.1 1 2 0.84945 0.7398 6.942 3 Median 0.72529 0.7398 NaN 1 0 Median 0.91669 0.73187 9.778 2 0 Median 21041000 12204000 8836600 12093000 6996200 5096800 8947700 5207800 3739900 6766 1999 6930 17960;17961;17962 28107;28108;28109 28107 3 ISGVQVNVK SEGKGPGKRRGPTIKISGVQVNVKSIIQHE RGPTIKISGVQVNVKSIIQHEEEFEMLHKS K I S V K S 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 3 0 0 9 0 942.54983 A0A024RC75;O14647 A0A024RC75 1212 1220 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0046249 68.787 1 1 1.0659 0.98508 27.157 2 Median 0.80012 0.81297 NaN 1 0 Median 1.4201 1.1936 NaN 1 0 Median 15641000 9225100 6415400 13740000 8541500 5198100 1901000 683690 1217300 6767 354 6931 17963;17964 28110;28111 28110 2 ISHELQVK RLMEICESLEKTKQKISHELQVKESQVNFQ LEKTKQKISHELQVKESQVNFQEGQLNSGK K I S V K E 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 952.53418 P49454 P49454 86 93 CENPF Centromere protein F yes yes 2 0.011568 69.628 1 1.1378 1.1184 NaN 1 Median 1.1378 1.1184 NaN 1 0 Median NaN NaN NaN 0 0 Median 8998600 4046900 4951700 8998600 4046900 4951700 0 0 0 6768 1581 6932 17965 28112 28112 1 ISHLPLVEELR MYPKYDRITNHIHVRISHLPLVEELRSLRQ IHVRISHLPLVEELRSLRQLHLNQLIRTSG R I S L R S 0 1 0 0 0 0 2 0 1 1 3 0 0 0 1 1 0 0 0 1 0 0 11 0 1304.7452 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6 B4DSV5 155 165 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 3 0.0062185 43.897 1 1.6183 1.619 NaN 1 Median 1.6183 1.619 NaN 1 0 Median NaN NaN NaN 0 0 Median 16416000 5285100 11130000 16416000 5285100 11130000 0 0 0 6769 955 6933 17966 28113;28114 28114 2 ISIEGNIAAGK CPSFSASSEGTRIKKISIEGNIAAGKSTFV RIKKISIEGNIAAGKSTFVNILKQLCEDWE K I S G K S 2 0 1 0 0 0 1 2 0 3 0 1 0 0 0 1 0 0 0 0 0 0 11 0 1071.5924 D6RCP9;F5CTF3;D6RFG8;P27707 D6RCP9 24 34 DCK Deoxycytidine kinase yes no 2 0.0064337 54.416 1 2.281 2.3151 NaN 1 Median 2.281 2.3151 NaN 1 0 Median NaN NaN NaN 0 0 Median 6100900 2081400 4019500 6100900 2081400 4019500 0 0 0 6770 1200 6934 17967 28115 28115 1 ISIGGGSCAISGGYGSR GFGSRSLYGLGGSKRISIGGGSCAISGGYG IGGGSCAISGGYGSRAGGSYGFGGAGSGFG R I S S R A 1 1 0 0 1 0 0 6 0 3 0 0 0 0 0 4 0 0 1 0 0 0 17 0 1597.7519 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;A0A0S2Z427;CON__P04259;B4DKV4 B2R853 70 86 KRT6C;KRT6A Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 0.0010138 61.375 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17937000 17937000 0 0 0 0 17937000 17937000 0 + 6771 859;1154 6935 17968;17969 28116;28117;28118 28116 3 ISILEEPSK DSANEKPALIPREKKISILEEPSKALRGVT IPREKKISILEEPSKALRGVTEGNRLLQQK K I S S K A 0 0 0 0 0 0 2 0 0 2 1 1 0 0 1 2 0 0 0 0 0 0 9 0 1014.5597 A0A024R3V0;Q9NUQ6;C9JKE4;F8VZ02;F8VT91;C9JGM8;F8W6C2;C9JW67;B8ZZZ7 A0A024R3V0 134 142 DNAPTP6;SPATS2L SPATS2-like protein yes no 2 0.0049382 67.993 2 1.1071 0.90906 6.5705 2 Median NaN NaN NaN 0 0 Median 1.1071 0.90906 6.5705 2 0 Median 4795300 2200000 2595200 0 0 0 4795300 2200000 2595200 6772 141 6936 17970;17971 28119;28120;28121 28119 3 ISIMAER FRKVIEEQLEPAVEKISIMAERLANQFAIY QLEPAVEKISIMAERLANQFAIYKPVTDFF K I S E R L 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 7 0 818.43202 E5KNY5;P42704 E5KNY5 1237 1243 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.05051 46.994 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6773 1207 6937 17972 28122 28122 921 1 ISINQALQHAFIQEK KDLLDQILMLDPAKRISINQALQHAFIQEK ISINQALQHAFIQEKI______________ R I S E K I 2 0 1 0 0 3 1 0 1 3 1 1 0 1 0 1 0 0 0 0 0 0 15 0 1738.9366 B4DZQ5;A0A024QZY5;Q13523;H0YDJ3;D3DWH5 B4DZQ5 978 992 PRPF4B;hCG_1820375 Serine/threonine-protein kinase PRP4 homolog yes no 3 0.0061962 53.169 1 2 0.56737 0.44724 NaN 1 Median NaN NaN NaN 0 0 Median 0.56737 0.44724 NaN 1 0 Median 4351200 3323000 1028300 0 0 0 4351200 3323000 1028300 6774 33 6938 17973;17974;17975 28123;28124;28125;28126 28124 4 ISISTSGGSFR GYGSRSLYNLGGSKRISISTSGGSFRNRFG GSKRISISTSGGSFRNRFGAGAGGGYGFGG R I S F R N 0 1 0 0 0 0 0 2 0 2 0 0 0 1 0 4 1 0 0 0 0 0 11 0 1110.5669 CON__P13647;P13647;F8VV57 CON__P13647 74 84 KRT5 Keratin, type II cytoskeletal 5 yes no 2 1.3018E-08 116.52 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67126000 67126000 0 60273000 60273000 0 6853100 6853100 0 + 6775 1162 6939 17976;17977 28127;28128 28127 2 ISLGLPVGAVINCADNTGAK ______________________________ PVGAVINCADNTGAKNLYIISVKGIKGRLN R I S A K N 3 0 2 1 1 0 0 3 0 2 2 1 0 0 1 1 1 0 0 2 0 0 20 0 1969.0303 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;B9ZVP7 Q9BTQ7 10 29 RPL23 60S ribosomal protein L23 yes no 2 1.2735E-12 100.54 2 2 1.1833 1.2315 34.214 4 Median 0.76794 0.91347 2.3727 2 0 Median 1.8406 1.6511 1.5924 2 0 Median 4370800000 1993000000 2377800000 2147100000 1220400000 926710000 2223700000 772550000 1451100000 6776 84 6940 17978;17979;17980;17981 28129;28130;28131;28132;28133;28134;28135;28136;28137;28138;28139 28133 11 ISLHPIEDNPIEEISVLSPEDLEAIK EHNSKIKYWHKEISKISLHPIEDNPIEEIS EEISVLSPEDLEAIKNPDSITNQIALLEAR K I S I K N 1 0 1 2 0 0 5 0 1 5 3 1 0 0 3 3 0 0 0 1 0 0 26 0 2899.5066 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1042 1067 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 5.7133E-14 82.65 2 2 1.5847 1.1674 17.684 4 Linear 0.88459 0.99808 2.2722 2 0 Median 1.543 1.3544 1.1068 2 0 Median 933660000 392570000 541100000 272680000 140340000 132340000 660990000 252230000 408760000 6777 2070 6941 17982;17983;17984;17985 28140;28141;28142;28143;28144;28145;28146 28145 7 ISLIQIFR DLTGIFMHGKIPTLKISLIQIFRAHLWQKI GKIPTLKISLIQIFRAHLWQKIHESIVMDL K I S F R A 0 1 0 0 0 1 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 0 8 0 988.60695 Q6P2Q9;B4DK16;Q6JH02;Q6JH03;I3L3Z8 Q6P2Q9 1571 1578 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00070974 128.57 2 2 0.91114 1.0076 22.691 4 Linear 0.89573 0.99063 12.137 2 0 Median 0.7942 0.68239 2.8375 2 0 Median 106130000 56657000 49470000 96013000 51275000 44738000 10114000 5381700 4732200 6778 1854 6942 17986;17987;17988;17989 28147;28148;28149;28150;28151;28152;28153;28154 28150 8 ISLPIEDYFNK SKGCFVFKPNSKKRKISLPIEDYFNKGKNE KKRKISLPIEDYFNKGKNEPEDSKLRFETY K I S N K G 0 0 1 1 0 0 1 0 0 2 1 1 0 1 1 1 0 0 1 0 0 0 11 0 1337.6867 B4E014;Q9UBD5;B7Z8A5;B7ZAI3 B4E014 22 32 ORC3 Origin recognition complex subunit 3 yes no 2 0.0023522 61.78 2 1 1.3565 1.2641 19.47 3 Median 1.4041 1.4042 14.863 2 0 Median 1.3565 1.0571 NaN 1 0 Median 20295000 9311100 10984000 16690000 7834600 8855300 3605500 1476500 2129000 6779 1058 6943 17990;17991;17992 28155;28156;28157;28158 28157 4 ISLPLPNFSSLNLR EIATYRKLLEGEESRISLPLPNFSSLNLRE RISLPLPNFSSLNLRETNLDSLPLVDTHSK R I S L R E 0 1 2 0 0 0 0 0 0 1 4 0 0 1 2 3 0 0 0 0 0 0 14 0 1569.8879 V9HWE1;P08670;B0YJC4;Q53HU8 V9HWE1 411 424 HEL113;VIM Vimentin yes no 2 1.7193E-29 152.64 2 1.4903 1.7502 2.079 2 Median 1.4903 1.7502 2.079 2 0 Median NaN NaN NaN 0 0 Median 845460000 315590000 529880000 845460000 315590000 529880000 0 0 0 6780 1457 6944 17993;17994 28159;28160;28161;28162;28163;28164;28165;28166;28167 28164 9 ISLQAIQQLVR QELQRKFHEAQLSEKISLQAIQQLVRKSYQ LSEKISLQAIQQLVRKSYQALALWKLLCEH K I S V R K 1 1 0 0 0 3 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1267.7612 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 738 748 NUP155 Nuclear pore complex protein Nup155 yes no 2 6.1098E-10 128.36 2 2 1.329 1.2666 16.633 4 Median 1.3877 1.4415 4.5263 2 0 Median 1.2811 1.094 6.9507 2 0 Median 50507000 22536000 27971000 42772000 19276000 23496000 7735200 3260500 4474700 6781 39 6945 17995;17996;17997;17998 28168;28169;28170;28171;28172 28168 5 ISLSTLQQQLGQPEK YGKVVDLAPLHLDARISLSTLQQQLGQPEK ISLSTLQQQLGQPEKALEALEPMYDPDTLA R I S E K A 0 0 0 0 0 4 1 1 0 1 3 1 0 0 1 2 1 0 0 0 0 0 15 0 1668.9046 Q9Y5Q9;H7C0C0 Q9Y5Q9 494 508 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 4.1502E-15 128.28 2 2 0.96761 1.0093 10.299 2 Median 0.96761 1.0093 10.299 2 0 Median NaN NaN NaN 0 0 Median 72497000 35531000 36966000 68578000 31611000 36966000 3919900 3919900 0 6782 2150 6946 17999;18000;18001;18002 28173;28174;28175;28176;28177 28175 5 ISNDNPEEHVLK ESGSPFDPVFEVEPKISNDNPEEHVLKVIP EPKISNDNPEEHVLKVIPEDASESEEKLDQ K I S L K V 0 0 2 1 0 0 2 0 1 1 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1393.6838 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 903 914 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.0007952 65.695 1 0.72945 0.7341 NaN 1 Median 0.72945 0.7341 NaN 1 0 Median NaN NaN NaN 0 0 Median 16090000 6802400 9287500 16090000 6802400 9287500 0 0 0 6783 878 6947 18003 28178;28179 28178 2 ISNFLLEK FEIQFSPGGEPDGGKISNFLLEKSRVVMRN GEPDGGKISNFLLEKSRVVMRNPGERSFHI K I S E K S 0 0 1 0 0 0 1 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 8 0 962.54368 Q4KMR3;Q12965;Q6ZNI9;O00160;B0I1T1;Q4LE34;Q14779;B4DVP3;H0YLJ4;Q92827 Q4KMR3 189 196 MYO1E;FLJ00395;MYO1F;MYO1F variant protein Unconventional myosin-Ie;Unconventional myosin-If yes no 2 0.0075918 82.279 1 0.92677 0.98708 NaN 1 Median 0.92677 0.98708 NaN 1 0 Median NaN NaN NaN 0 0 Median 15944000 8218000 7725700 15944000 8218000 7725700 0 0 0 6784 1703 6948 18004 28180;28181 28181 2 ISNIPSLIFLDATTGK YKEKHRKLKLWNKYRISNIPSLIFLDATTG SNIPSLIFLDATTGKVVCRNGLLVIRDDPE R I S G K V 1 0 1 1 0 0 0 1 0 3 2 1 0 1 1 2 2 0 0 0 0 0 16 0 1688.9349 Q6DKJ4 Q6DKJ4 129 144 NXN Nucleoredoxin yes yes 2 0.00019313 72.089 2 2.2513 2.2661 NaN 1 Median 2.2513 2.2661 NaN 1 0 Median NaN NaN NaN 0 0 Median 9176700 1880900 7295800 9176700 1880900 7295800 0 0 0 6785 1841 6949 18005;18006 28182;28183 28183 2 ISNPTEFQNHEK VRVDPDSQQNHSEIKISNPTEFQNHEKQES EIKISNPTEFQNHEKQESQDLRATAKVPSP K I S E K Q 0 0 2 0 0 1 2 0 1 1 0 1 0 1 1 1 1 0 0 0 0 0 12 0 1442.679 Q9BXS6 Q9BXS6 110 121 NUSAP1 Nucleolar and spindle-associated protein 1 yes yes 3 0.0061329 39.73 2 0.37579 0.39127 6.7563 2 Median 0.37579 0.39127 6.7563 2 0 Median NaN NaN NaN 0 0 Median 30950000 18687000 12263000 30950000 18687000 12263000 0 0 0 6786 2014 6950 18007;18008 28184;28185 28185 2 ISNQVDLSNVCAQYR EKERMLRESLKEYQKISNQVDLSNVCAQYR ISNQVDLSNVCAQYRQVRFYEGVVELSLTA K I S Y R Q 1 1 2 1 1 2 0 0 0 1 1 0 0 0 0 2 0 0 1 2 0 0 15 0 1765.8417 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 869 883 NUP155 Nuclear pore complex protein Nup155 yes no 2 2.6063E-23 140.24 1 2 1.2311 1.0766 8.4582 2 Median NaN NaN NaN 0 0 Median 1.2311 1.0766 8.4582 2 0 Median 15306000 2263700 13043000 10233000 0 10233000 5073800 2263700 2810100 6787 39 6951 18009;18010;18011 28186;28187;28188 28186 3 ISNTAISISDHTALAQFCK VLVAPGNAGTACSEKISNTAISISDHTALA AISISDHTALAQFCKEKKIEFVVVGPEAPL K I S C K E 3 0 1 1 1 1 0 0 1 3 1 1 0 1 0 3 2 0 0 0 0 0 19 0 2076.031 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;C9JZG2;C9JKQ7 Q3B7A7 45 63 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 3.6531E-18 114.55 2 1 1.8108 1.6253 52.993 2 Median 2.3226 2.3642 NaN 1 0 Median 1.4118 1.1174 NaN 1 0 Median 49671000 12659000 37012000 45496000 10530000 34967000 4174300 2128900 2045400 6788 1507 6952 18012;18013;18014 28189;28190;28191;28192;28193;28194;28195;28196 28190 8 ISPGGISQILDLVK HSDPELLKQKLQSYKISPGGISQILDLVKG KISPGGISQILDLVKGTHYQVACQKYFEMI K I S V K G 0 0 0 1 0 1 0 2 0 3 2 1 0 0 1 2 0 0 0 1 0 0 14 0 1438.8395 A8K7A0;P49643 A8K7A0 403 416 PRIM2 DNA primase large subunit yes no 2 7.4827E-05 89.301 2 1.6585 1.7126 19.562 2 Median 1.6585 1.7126 19.562 2 0 Median NaN NaN NaN 0 0 Median 14777000 4953700 9823400 14777000 4953700 9823400 0 0 0 6789 768 6953 18015;18016 28197;28198 28197 2 ISQSNYIPTQQDVLR QLNDSASYYLNDLDRISQSNYIPTQQDVLR ISQSNYIPTQQDVLRTRVKTTGIVETHFTF R I S L R T 0 1 1 1 0 3 0 0 0 2 1 0 0 0 1 2 1 0 1 1 0 0 15 0 1760.9057 P08754 P08754 162 176 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 2 0.0049508 56.225 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7309600 0 7309600 7309600 0 7309600 0 0 0 6790 1458 6954 18017 28199 28199 1 ISRPHPSTAESK RRTLFRGRRRREDDRISRPHPSTAESKAPT DDRISRPHPSTAESKAPTPKFDLLASNFPP R I S S K A 1 1 0 0 0 0 1 0 1 1 0 1 0 0 2 3 1 0 0 0 0 0 12 1 1308.6786 Q71RC2;X6RLN4 Q71RC2 460 471 LARP4 La-related protein 4 yes no 3 0.020859 37.613 1 2.5568 2.8113 NaN 1 Median 2.5568 2.8113 NaN 1 0 Median NaN NaN NaN 0 0 Median 4413600 1138800 3274900 4413600 1138800 3274900 0 0 0 6791 1868 6955 18018 28200 28200 0 ISSFRPVEDITEEDLENVAITVR KTIGGKCREYRRRHRISSFRPVEDITEEDL DITEEDLENVAITVRDKIYDKVLGNTCHQC R I S V R D 1 2 1 2 0 0 4 0 0 3 1 0 0 1 1 2 2 0 0 3 0 0 23 1 2631.3392 A8K8X5;A0A024RA51;Q96GN5 A8K8X5 319 341 CDCA7L Cell division cycle-associated 7-like protein yes no 3 0.059846 11.943 1 0.85737 0.72821 NaN 1 Median NaN NaN NaN 0 0 Median 0.85737 0.72821 NaN 1 0 Median 8075300 4177800 3897500 0 0 0 8075300 4177800 3897500 6792 295 6956 18019 28201 28201 1 ISSIQSIVPALEIANAHR KCEFQDAYVLLSEKKISSIQSIVPALEIAN IQSIVPALEIANAHRKPLVIIAEDVDGEAL K I S H R K 3 1 1 0 0 1 1 0 1 4 1 0 0 0 1 3 0 0 0 1 0 0 18 0 1918.0636 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;B7Z532;Q53QD5 B7Z597 242 259 HSPD1 60 kDa heat shock protein, mitochondrial yes no 3 1.7688E-07 87.088 2 1 1.5991 1.6764 52.142 3 Plateau 1.5933 1.7069 2.5488 2 0 Median 0.8397 0.69217 NaN 1 0 Median 80441000 31907000 48535000 72098000 27992000 44106000 8343500 3914300 4429200 6793 143 6957 18020;18021;18022 28202;28203;28204;28205 28204 3 ISSLLAELEAIQR FFKMELFEGMRESTKISSLLAELEAIQRNS TKISSLLAELEAIQRNSASQKSVIVSQWTN K I S Q R N 2 1 0 0 0 1 2 0 0 2 3 0 0 0 0 2 0 0 0 0 0 0 13 0 1441.814 A0A024R0F1;Q9UNY4 A0A024R0F1 993 1005 TTF2 Transcription termination factor 2 yes no 2 3.7216E-19 147.37 2 2 1.0461 0.98129 31.213 4 Median 0.70918 0.74951 0.93981 2 0 Median 1.5375 1.2867 1.1553 2 0 Median 106320000 57171000 49145000 68705000 42186000 26519000 37611000 14985000 22626000 6794 44 6958 18023;18024;18025;18026 28206;28207;28208;28209;28210;28211;28212;28213;28214;28215 28212 10 ISSLLEEQFQQGK KKIQKKYDERKKNAKISSLLEEQFQQGKLL AKISSLLEEQFQQGKLLACIASRPGQCGRA K I S G K L 0 0 0 0 0 3 2 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 13 0 1505.7726 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 158 170 RPS8 40S ribosomal protein S8 yes no 2 4.3246E-143 276.13 9 9 0.83562 0.83678 12.7 5 Median 0.77288 0.92249 2.1846 2 0 Median 0.92973 0.8286 11.515 3 0 Plateau 4058900000 2246400000 1812600000 2873600000 1635900000 1237600000 1185300000 610410000 574920000 6795 1635 6959 18027;18028;18029;18030;18031;18032;18033;18034;18035;18036;18037;18038;18039;18040;18041;18042;18043;18044 28216;28217;28218;28219;28220;28221;28222;28223;28224;28225;28226;28227;28228;28229;28230;28231;28232;28233;28234;28235;28236;28237;28238;28239;28240;28241;28242;28243;28244;28245;28246;28247;28248;28249;28250;28251;28252;28253;28254 28227 39 ISSQQNPNSNTLGHILCVIGHIAK SPRLDYSRIIQSWEKISSQQNPNSNTLGHI NTLGHILCVIGHIAKHLPKSTRDKVTDAVK K I S A K H 1 0 3 0 1 2 0 2 2 4 2 1 0 0 1 3 1 0 0 1 0 0 24 0 2600.3493 P42695;G3V1A9;E9PKK4 P42695 744 767 NCAPD3 Condensin-2 complex subunit D3 yes no 4 0.0049677 26.5 1 2.0845 1.6975 NaN 1 Median NaN NaN NaN 0 0 Median 2.0845 1.6975 NaN 1 0 Median 6819100 2115800 4703300 0 0 0 6819100 2115800 4703300 6796 1565 6960 18045 28255 28255 1 ISSSSFSR RAFSSRSYTSGPGSRISSSSFSRVGSSNFR TSGPGSRISSSSFSRVGSSNFRGGLGGGYG R I S S R V 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 5 0 0 0 0 0 0 8 0 869.4243 CON__P05787;P05787;F8VUG2;F8W1U3;F8VQY3 CON__P05787 33 40 KRT8 Keratin, type II cytoskeletal 8 yes no 2 2.494E-05 139.68 2 1.1287 1.3145 13.485 2 Median 1.1287 1.3145 13.485 2 0 Median NaN NaN NaN 0 0 Median 557880000 256910000 300970000 557880000 256910000 300970000 0 0 0 + 6797 1156 6961 18046;18047 28256;28257;28258;28259;28260 28260 5 ISSVLAGGSCR GSCGIGGGIGGGSSRISSVLAGGSCRAPST GSSRISSVLAGGSCRAPSTYGGGLSVSSSR R I S C R A 1 1 0 0 1 0 0 2 0 1 1 0 0 0 0 3 0 0 0 1 0 0 11 0 1105.555 CON__P02533;P02533;K7ENV3;CON__P08779;P08779 CON__P02533 31 41 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 4.0792E-22 145.9 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87175000 87175000 0 72023000 72023000 0 15153000 15153000 0 + 6798 1150;1159 6962 18048;18049;18050 28261;28262;28263 28261 3 ISSVQFHPGAQIVMVAGLDNAVSLFQVDGK KNCQHANAERPTVARISSVQFHPGAQIVMV AGLDNAVSLFQVDGKTNPKIQSIYLERFPI R I S G K T 3 0 1 2 0 3 0 3 1 2 2 1 1 2 1 3 0 0 0 5 0 0 30 0 3126.6172 B2RAX6;Q9Y5J1 B2RAX6 230 259 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 3.0893E-07 40.837 1 1.726 1.6905 NaN 1 Median 1.726 1.6905 NaN 1 0 Median NaN NaN NaN 0 0 Median 22052000 8088200 13963000 22052000 8088200 13963000 0 0 0 6799 876 6963 18051 28264 28264 683 1 ISTINILLSTLK EFIPCIFSSGIKEDRISTINILLSTLKTKV EDRISTINILLSTLKTKVVHNKNITKTQKV R I S L K T 0 0 1 0 0 0 0 0 0 3 3 1 0 0 0 2 2 0 0 0 0 0 12 0 1314.8123 O60287 O60287 237 248 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 6.1296E-13 133.89 2 1.2749 1.2698 11.765 2 Median 1.2749 1.2698 11.765 2 0 Median NaN NaN NaN 0 0 Median 49197000 20862000 28335000 49197000 20862000 28335000 0 0 0 6800 1392 6964 18052;18053 28265;28266;28267;28268 28268 4 ISTITPQIQAFNLQK LEITKLDSSIISEGKISTITPQIQAFNLQK ISTITPQIQAFNLQKAAAEGLMSLLREMGK K I S Q K A 1 0 1 0 0 3 0 0 0 3 1 1 0 1 1 1 2 0 0 0 0 0 15 0 1700.9461 B4DL80;G5EA36;P30260;I0EZ68;I3L328 B4DL80 381 395 CDC27 Cell division cycle protein 27 homolog yes no 2 0.0013902 47.894 1 1.4625 1.4795 NaN 1 Median 1.4625 1.4795 NaN 1 0 Median NaN NaN NaN 0 0 Median 8990400 4646900 4343500 8990400 4646900 4343500 0 0 0 6801 995 6965 18054 28269 28269 1 ISTLPQLNSALVQDLAK HMTVKNKYATSKHAKISTLPQLNSALVQDL TLPQLNSALVQDLAKAVAKV__________ K I S A K A 2 0 1 1 0 2 0 0 0 1 4 1 0 0 1 2 1 0 0 1 0 0 17 0 1810.02 P14635 P14635 412 428 CCNB1 G2/mitotic-specific cyclin-B1 yes yes 2 2.2142E-25 145.81 2 2 0.98595 0.95776 11.104 4 Median 0.76881 0.86484 2.6971 2 0 Median 1.2502 1.0461 0.7436 2 0 Median 298890000 159820000 139070000 204550000 117350000 87201000 94335000 42468000 51866000 6802 1483 6966 18055;18056;18057;18058 28270;28271;28272;28273;28274;28275;28276;28277 28276 8 ISVATGALEAAQGSK DARRACAAGTPAVIRISVATGALEAAQGSK ISVATGALEAAQGSKSQCQTRQTSATSTTM R I S S K S 4 0 0 0 0 1 1 2 0 1 1 1 0 0 0 2 1 0 0 1 0 0 15 0 1401.7464 A6NEM2;P51610 A6NEM2 1149 1163 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 1.5086E-07 103.88 2 2 1.498 1.2206 8.8954 2 Median NaN NaN NaN 0 0 Median 1.498 1.2206 8.8954 2 0 Median 11260000 1921700 9338400 5976300 0 5976300 5283800 1921700 3362100 6803 680 6967 18059;18060;18061;18062 28278;28279;28280;28281;28282 28278 5 ISVDITLALESK KRGGSPAVTLLISEKISVDITLALESKSSW SEKISVDITLALESKSSWPASTQEGLRIQN K I S S K S 1 0 0 1 0 0 1 0 0 2 2 1 0 0 0 2 1 0 0 1 0 0 12 0 1287.7286 Q8N884 Q8N884 316 327 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.0026022 67.93 3 1.4139 1.5204 NaN 1 Median 1.4139 1.5204 NaN 1 0 Median NaN NaN NaN 0 0 Median 35458000 4797100 30661000 35458000 4797100 30661000 0 0 0 6804 1914 6968 18063;18064;18065 28283;28284;28285 28284 3 ISVFRPGLR VYQLGDVSQKTTWHRISVFRPGLRDVAYQY KTTWHRISVFRPGLRDVAYQYVKKRSRIYL R I S L R D 0 2 0 0 0 0 0 1 0 1 1 0 0 1 1 1 0 0 0 1 0 0 9 1 1043.624 Q567R6;A4D1U3;Q04837;A0A0G2JLD8;E7EUY5;B7Z268;C9K0U8 Q567R6 87 95 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 3 0.0072421 47.198 2 0.80415 0.90066 2.2806 2 Median 0.80415 0.90066 2.2806 2 0 Median NaN NaN NaN 0 0 Median 191570000 100930000 90635000 191570000 100930000 90635000 0 0 0 6805 666 6969 18066;18067 28286;28287;28288 28286 3 ISVLYSFLR ATLEQNYIVCELQQKISVLYSFLRSHLKKK CELQQKISVLYSFLRSHLKKKSIVFFSSCK K I S L R S 0 1 0 0 0 0 0 0 0 1 2 0 0 1 0 2 0 0 1 1 0 0 9 0 1096.6281 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 301 309 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.0016784 82.279 2 2 0.77438 0.78931 5.9975 4 Linear 0.76995 0.77019 3.0741 2 0 Median 0.79563 0.70069 3.0008 2 0 Median 27266000 14040000 13225000 23182000 11792000 11390000 4083500 2247900 1835600 6806 1708 6970 18068;18069;18070;18071 28289;28290;28291;28292;28293 28289 5 ISVNDFIIK LVRKELNKILEGRSKISVNDFIIKRSALAC LEGRSKISVNDFIIKRSALACLKVPEANSS K I S I K R 0 0 1 1 0 0 0 0 0 3 0 1 0 1 0 1 0 0 0 1 0 0 9 0 1047.5964 Q01991;B4DS43;B4DLQ2;H0YDD4;E9PEJ4;B4DJX1;Q86YI5;A0A024R3D8;P10515 Q01991 138 146 DLAT Acetyltransferase component of pyruvate dehydrogenase complex;Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes no 2 0.011752 61.962 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6807 134 6971 18072 28294 28294 1 ISVYYNEATGGK PTGTYHGDSDLQLDRISVYYNEATGGKYVP LDRISVYYNEATGGKYVPRAILVDLEPGTM R I S G K Y 1 0 1 0 0 0 1 2 0 1 0 1 0 0 0 1 1 0 2 1 0 0 12 0 1300.6299 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;B4DMU8;B4DMJ5 Q5JP53 29 40 TUBB Tubulin beta chain yes no 2 4.7654E-48 193.82 3 2 1.3084 1.3108 31.213 4 Median 1.4586 1.733 3.3524 2 0 Median 1.1805 1.0104 0.66865 2 0 Median 1765900000 707340000 1058500000 1590100000 624220000 965890000 175780000 83123000 92656000 6808 1452 6972 18073;18074;18075;18076;18077 28295;28296;28297;28298;28299;28300;28301;28302;28303;28304;28305;28306 28301 12 ISWVGEAVK KKMHQGKKKKQNKNRISWVGEAVKTDGKKS KQNKNRISWVGEAVKTDGKKSYYKKVCIDA R I S V K T 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 1 0 2 0 0 9 0 987.53893 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 793 801 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.012937 64.42 2 1 0.63892 0.5734 42.363 2 Median 0.41743 0.42498 NaN 1 0 Median 0.97793 0.77366 NaN 1 0 Median 23317000 10714000 12603000 20990000 9558200 11432000 2326300 1155700 1170600 6809 222 6973 18078;18079;18080 28307;28308;28309 28308 3 ISYSGQFLVK SVTPADLEKVFAEHKISYSGQFLVKSGYAF FAEHKISYSGQFLVKSGYAFVDCPDEHWAM K I S V K S 0 0 0 0 0 1 0 1 0 1 1 1 0 1 0 2 0 0 1 1 0 0 10 0 1140.6179 Q9NZI8 Q9NZI8 27 36 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0034605 64.42 1 2.0267 2.1301 NaN 1 Median 2.0267 2.1301 NaN 1 0 Median NaN NaN NaN 0 0 Median 34953000 12527000 22426000 34953000 12527000 22426000 0 0 0 6810 2087 6974 18081 28310 28310 1 ISYVQDENRDPIR MPKTPSQKNRRKKRRISYVQDENRDPIRRR RRISYVQDENRDPIRRRLSRRKSRSSQLSS R I S I R R 0 2 1 2 0 1 1 0 0 2 0 0 0 0 1 1 0 0 1 1 0 0 13 1 1603.7954 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 71 83 INCENP Inner centromere protein yes no 2;3 2.6126E-09 105.65 3 2 0.96018 1.1142 20.639 5 Median 0.88056 0.96347 8.4972 3 0 Median 1.6428 1.4277 11.08 2 0 Median 556970000 280540000 276420000 458040000 244480000 213560000 98923000 36058000 62865000 6811 2059 6975 18082;18083;18084;18085;18086 28311;28312;28313;28314;28315;28316;28317;28318;28319 28313 8 ITALDEFATK KHEDFEKSLSAQEEKITALDEFATKLIQNN AQEEKITALDEFATKLIQNNHYAMEDVATR K I T T K L 2 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1107.5812 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 523 532 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.035186 40.715 1 2.1972 2.215 NaN 1 Median 2.1972 2.215 NaN 1 0 Median NaN NaN NaN 0 0 Median 10029000 3031600 6997600 10029000 3031600 6997600 0 0 0 6812 523 6976 18087 28320 28320 1 ITAQENDMEVELPAAANSR LRSRSTRMSTVSELRITAQENDMEVELPAA ENDMEVELPAAANSRKQFSVPPAPTRPSCP R I T S R K 4 1 2 1 0 1 3 0 0 1 1 0 1 0 1 1 1 0 0 1 0 0 19 0 2057.9688 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q5JR91;Q5JR89 A8K3S3 122 140 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 1.3611E-12 108.63 2 0.98424 1.0197 10.935 2 Median 0.98424 1.0197 10.935 2 0 Median NaN NaN NaN 0 0 Median 42542000 20018000 22523000 42542000 20018000 22523000 0 0 0 6813 626 6977 18088;18089 28321;28322;28323;28324;28325;28326 28323 483 6 ITAQQITTPGAQQK IQPQAAQGPAAVQQKITAQQITTPGAQQKV KITAQQITTPGAQQKVAYAAQPALKTQFLT K I T Q K V 2 0 0 0 0 4 0 1 0 2 0 1 0 0 1 0 3 0 0 0 0 0 14 0 1483.7995 Q96L91;A0A0A0MR70 Q96L91 2995 3008 EP400 E1A-binding protein p400 yes no 2 0.014388 47.971 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6814 1977 6978 18090 28327 28327 1 ITASLEIR HITVVHKKSSRYLGKITASLEIRAIKKPID SSRYLGKITASLEIRAIKKPIDFVLNKVAK K I T I R A 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 8 0 901.52328 Q2TB10;B7Z4V7 Q2TB10 552 559 ZNF800 Zinc finger protein 800 yes no 2 0.036137 55.504 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3153400 3153400 0 3153400 3153400 0 0 0 0 6815 1777 6979 18091 28328 28328 1 ITCLCQVPQNAANR QTSAMLFTVDNEAGKITCLCQVPQNAANRG KITCLCQVPQNAANRGLKASEWVQQVSGLM K I T N R G 2 1 2 0 2 2 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 0 14 0 1643.7872 P49588 P49588 899 912 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 1.0883E-06 103.31 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15946000 0 15946000 15946000 0 15946000 0 0 0 6816 1583 6980 18092;18093 28329;28330;28331 28330 3 ITDAYLDQYLWYEADK YSHLVPVYDVEPLEKITDAYLDQYLWYEAD TDAYLDQYLWYEADKRRLFPPWIKPADTEP K I T D K R 2 0 0 3 0 1 1 0 0 1 2 1 0 0 0 0 1 1 3 0 0 0 16 0 2005.9309 Q6P2Q9;I3L0J9 Q6P2Q9 917 932 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 3.3515E-06 82.543 2 1 0.82971 0.64981 NaN 1 Median NaN NaN NaN 0 0 Median 0.82971 0.64981 NaN 1 0 Median 17987000 16604000 1383400 14782000 14782000 0 3205000 1821600 1383400 6817 1854 6981 18094;18095;18096 28332;28333;28334 28333 3 ITDEEELNDYK KERELELLPPPPQQKITDEEELNDYKLRKR PQQKITDEEELNDYKLRKRKTFEDNIRKNR K I T Y K L 0 0 1 2 0 0 3 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 11 0 1367.6093 Q69YP1;Q5JY65;Q9BZJ0;Q8IXG0 Q69YP1 94 104 DKFZp762M013;CRNKL1;crn Crooked neck-like protein 1 yes no 2 0.0013184 84.17 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3769700 0 3769700 3769700 0 3769700 0 0 0 6818 1810 6982 18097 28335 28335 1 ITDFGLAK LAARNVLVKTPQHVKITDFGLAKLLGAEEK KTPQHVKITDFGLAKLLGAEEKEYHAEGGK K I T A K L 1 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 8 0 863.47527 Q59FL8;Q504U8;E7BSV0;E9PFD7;F2YGG7;Q2TTR7;A9CB80;A8K2T7;P00533;B7Z2I3;A0A068JD88;I3WA73;I3WA72;I3WA68;Q75MF2 Q59FL8 724 731 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor yes no 2 0.027047 54.157 1 2.0988 2.1173 NaN 1 Median 2.0988 2.1173 NaN 1 0 Median NaN NaN NaN 0 0 Median 7874500 2925500 4948900 7874500 2925500 4948900 0 0 0 6819 713 6983 18098 28336 28336 1 ITDGLHALQEASNK EDSKTLAAKEKEVKKITDGLHALQEASNKD KITDGLHALQEASNKDAEALAAAQQHFNAV K I T N K D 2 0 1 1 0 1 1 1 1 1 2 1 0 0 0 1 1 0 0 0 0 0 14 0 1495.7631 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 355 368 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 3.5135E-22 149.96 4 4 1.2132 1.1507 22.426 8 Median 0.80315 0.92297 4.8898 4 0 Median 1.7301 1.4012 1.6278 4 0 Median 693770000 366540000 327230000 603330000 335060000 268270000 90440000 31483000 58957000 6820 69 6984 18099;18100;18101;18102;18103;18104;18105;18106 28337;28338;28339;28340;28341;28342;28343;28344;28345;28346;28347;28348;28349;28350;28351;28352 28337 16 ITDVIIGFQACCR RAGVLAHLEEERDLKITDVIIGFQACCRGY LKITDVIIGFQACCRGYLARKAFAKRQQQL K I T C R G 1 1 0 1 2 1 0 1 0 3 0 0 0 1 0 0 1 0 0 1 0 0 13 0 1551.7538 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 779 791 MYH9 Myosin-9 yes no 2 0.0008036 79.489 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13177000 0 13177000 9050200 0 9050200 4126900 0 4126900 6821 81 6985 18107;18108;18109 28353;28354;28355 28355 3 ITEAIGIISK MLVQYLQDAYSFSRKITEAIGIISKMMYEN SFSRKITEAIGIISKMMYENTTTVVQEVIE K I T S K M 1 0 0 0 0 0 1 1 0 4 0 1 0 0 0 1 1 0 0 0 0 0 10 0 1043.6227 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 634 643 NCAPD2 Condensin complex subunit 1 yes no 2 1.6331E-05 100.48 2 2 1.1242 1.0584 3.9115 4 Median 0.90869 1.039 0.36971 2 0 Median 1.3909 1.1015 3.4155 2 0 Median 380570000 189290000 191280000 346650000 174890000 171760000 33927000 14404000 19523000 6822 908 6986 18110;18111;18112;18113 28356;28357;28358;28359;28360;28361;28362;28363 28358 8 ITEELNLR CERPLTQEELLREAKITEELNLRSLETYER ELLREAKITEELNLRSLETYERLEADKKKQ K I T L R S 0 1 1 0 0 0 2 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 986.53966 Q15906;B4DMP5 Q15906 178 185 VPS72 Vacuolar protein sorting-associated protein 72 homolog yes no 2 0.02313 56.721 1 1 0.8159 0.81476 NaN 1 Median 0.8159 0.81476 NaN 1 0 Median NaN NaN NaN 0 0 Median 17918000 9083400 8834400 16795000 9083400 7711400 1123000 0 1123000 6823 1767 6987 18114;18115 28364;28365 28364 2 ITEQLIEAINNGDFEAYTK TEDEDLKVRKQEIIKITEQLIEAINNGDFE LIEAINNGDFEAYTKICDPGLTSFEPEALG K I T T K I 2 0 2 1 0 1 3 1 0 3 1 1 0 1 0 0 2 0 1 0 0 0 19 0 2168.0637 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;H0Y6G2;Q8WU40;B3KY86;Q13280;Q59FI6 Q5SWX3 391 409 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 0.0077362 28.812 1 1.0752 1.0748 NaN 1 Median 1.0752 1.0748 NaN 1 0 Median NaN NaN NaN 0 0 Median 7749500 3507400 4242100 7749500 3507400 4242100 0 0 0 6824 475 6988 18116 28366 28366 1 ITESEEVVSR RVRSLETENAGLRLRITESEEVVSREVSGI GLRLRITESEEVVSREVSGIKAAYEAELGD R I T S R E 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 2 1 0 0 2 0 0 10 0 1147.5721 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;W5X314 P02545 63 72 LMNA Prelamin-A/C;Lamin-A/C yes no 2 2.9202E-22 166.33 2 1.3379 1.5526 3.0781 2 Median 1.3379 1.5526 3.0781 2 0 Median NaN NaN NaN 0 0 Median 499390000 221750000 277640000 499390000 221750000 277640000 0 0 0 6825 1440 6989 18117;18118 28367;28368;28369;28370 28367 4 ITFHGEGDQEPGLEPGDIIIVLDQK ILEVHIDKGMKDGQKITFHGEGDQEPGLEP PGLEPGDIIIVLDQKDHAVFTRRGEDLFMC K I T Q K D 0 0 0 3 0 2 3 4 1 4 2 1 0 1 2 0 1 0 0 1 0 0 25 0 2719.3705 P31689;B7Z5C0;Q9NXZ8 P31689 222 246 DNAJA1;HDJ2 DnaJ homolog subfamily A member 1 yes no 3 7.261E-14 84.68 2 2 0.95172 0.89279 39.492 4 Median 1.1357 1.2506 2.0413 2 0 Median 0.77904 0.63173 3.2938 2 0 Median 163400000 82781000 80620000 105720000 49893000 55830000 57677000 32887000 24790000 6826 1535 6990 18119;18120;18121;18122 28371;28372;28373;28374;28375;28376 28372 6 ITFLLQAIR KQAEETYENIPGQSKITFLLQAIRNTTAAE IPGQSKITFLLQAIRNTTAAEEARQMAAVL K I T I R N 1 1 0 0 0 1 0 0 0 2 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1073.6597 A0A024RDY0;H0Y8C6;O00410;C9JMV5;E7ETV3;B4E0R6;C9JZD8;C9J875;C9JQT6;E7ESA1;E7ESZ1;E7EWK4;E7EX05;E7EQT5;E7ETV8;E7EV12 A0A024RDY0 42 50 RANBP5;IPO5 Importin-5 yes no 2 0.00063538 96.492 3 1.9719 2.0537 29.155 2 Median 1.9719 2.0537 29.155 2 0 Median NaN NaN NaN 0 0 Median 8921000 3441900 5479100 8921000 3441900 5479100 0 0 0 6827 394 6991 18123;18124;18125 28377;28378;28379 28379 3 ITFPHR MEKVEVKNYDAALRKITFPHRCLISCSKKR KNYDAALRKITFPHRCLISCSKKRQLLLFQ K I T H R C 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 6 0 769.42351 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4;A0A0J9YWK2 Q969X6 330 335 CIRH1A Cirhin yes no 2 0.030609 84.185 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6828 1955 6992 18126 28380 28380 1 ITGEAFVQFASQELAEK IVPNGITLPVDPEGKITGEAFVQFASQELA GEAFVQFASQELAEKALGKHKERIGHRYIE K I T E K A 3 0 0 0 0 2 3 1 0 1 1 1 0 2 0 1 1 0 0 1 0 0 17 0 1866.9363 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 151 167 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2 1.2062E-74 192.14 2 1 1.1075 0.89935 NaN 1 Median NaN NaN NaN 0 0 Median 1.1075 0.89935 NaN 1 0 Median 170330000 62332000 108000000 142780000 49125000 93657000 27551000 13207000 14343000 6829 234 6993 18127;18128;18129 28381;28382;28383;28384;28385 28381 5 ITGIEPLPGENK IHVRSTRGRNKVGRKITGIEPLPGENKILV GRKITGIEPLPGENKILVTSNDSRIRLYDL K I T N K I 0 0 1 0 0 0 2 2 0 2 1 1 0 0 2 0 1 0 0 0 0 0 12 0 1266.682 B7Z947;Q8N397;H7BY83;Q5JSH3 B7Z947 455 466 WDR44;DKFZp761M142 WD repeat-containing protein 44 yes no 2 0.0064581 60.298 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3626300 0 3626300 3626300 0 3626300 0 0 0 6830 1106 6994 18130 28386 28386 1 ITGMLLEIDNSELLHMLESPESLR LFPLIQAMHPTLAGKITGMLLEIDNSELLH NSELLHMLESPESLRSKVDEAVAVLQAHQA K I T L R S 0 1 1 1 0 0 4 1 1 2 6 0 2 0 1 3 1 0 0 0 0 0 24 0 2739.3823 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YAS7;H0YAS6;H0YB75;H0YER0;H0Y6X6;B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q53GL4;Q59GZ7 A0A087WTT1 467 490 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 3 6.3716E-07 50.783 1 6.3156 6.6024 NaN 1 Median 6.3156 6.6024 NaN 1 0 Median NaN NaN NaN 0 0 Median 22581000 2616000 19964000 22581000 2616000 19964000 0 0 0 6831 273;818 6995 18131 28387 28387 207;208 0 ITGNPVVTNR LAAQLKPMTPFKRTRITGNPVVTNRIEEGE FKRTRITGNPVVTNRIEEGERPDRAKGYDL R I T N R I 0 1 2 0 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 2 0 0 10 0 1069.588 B7Z700;Q5JR04;Q9HCE1;Q9H8T8 B7Z700 199 208 MOV10 Putative helicase MOV-10 yes no 2 2.291E-05 93.111 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3455700 3455700 0 3455700 3455700 0 0 0 0 6832 1102 6996 18132;18133 28388;28389 28388 2 ITHCPTLLTR DNLDAANHYRKEVVKITHCPTLLTRDGDRI KEVVKITHCPTLLTRDGDRIRSNGKFGGLQ K I T T R D 0 1 0 0 1 0 0 0 1 1 2 0 0 0 1 0 3 0 0 0 0 0 10 0 1210.6492 A6NHR9;J3KTL8 A6NHR9 1853 1862 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0026107 45.661 1 0.88747 0.97066 NaN 1 Median 0.88747 0.97066 NaN 1 0 Median NaN NaN NaN 0 0 Median 30608000 20046000 10563000 30608000 20046000 10563000 0 0 0 6833 684 6997 18134 28390 28390 1 ITHQIVDRPGQQTSVIGR KSLCIGATYDVTDSRITHQIVDRPGQQTSV QIVDRPGQQTSVIGRCYVQPQWVFDSVNAR R I T G R C 0 2 0 1 0 3 0 2 1 3 0 0 0 0 1 1 2 0 0 2 0 0 18 1 2004.0865 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 356 373 PES1 Pescadillo homolog yes no 3;4 0.00024612 43.955 4 2 1.079 1.0933 4.6838 5 Median 0.99569 1.1613 3.7893 3 0 Median 1.2092 1.0662 1.6503 2 0 Median 234520000 121470000 113050000 222960000 116270000 106700000 11563000 5209300 6353400 6834 886 6998 18135;18136;18137;18138;18139;18140 28391;28392;28393;28394;28395;28396;28397;28398;28399;28400 28394 9 ITIAAYLPLK LLVSYRHGHVHLSAKITIAAYLPLKAVDPS HLSAKITIAAYLPLKAVDPSSVALVTLGSS K I T L K A 2 0 0 0 0 0 0 0 0 2 2 1 0 0 1 0 1 0 1 0 0 0 10 0 1101.6798 Q8TEM1 Q8TEM1 635 644 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0002277 93.162 2 2 0.71087 0.66413 12.527 4 Median 0.71087 0.71391 5.7283 2 0 Median 0.71215 0.59643 10.71 2 0 Median 18768000 10770000 7997700 14980000 8640400 6339700 3787500 2129500 1658000 6835 1937 6999 18141;18142;18143;18144 28401;28402;28403;28404;28405;28406;28407 28404 7 ITIGQAPTEK TWQRVLDTNDRFLRKITIGQAPTEKGHTRT RFLRKITIGQAPTEKGHTRTAQFDISVASE K I T E K G 1 0 0 0 0 1 1 1 0 2 0 1 0 0 1 0 2 0 0 0 0 0 10 0 1056.5815 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 544 553 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 2.8454E-09 125.83 2 1 1.9325 2.1446 51.542 3 Median 2.1362 2.3386 12.252 2 0 Median 1.1605 0.97 NaN 1 0 Median 87196000 26967000 60229000 85532000 26039000 59493000 1664300 928020 736310 6836 196 7000 18145;18146;18147 28408;28409;28410 28409 3 ITISPLQELTLYNPER EGRNLKKIEQDTDTKITISPLQELTLYNPE TISPLQELTLYNPERTITVKGNVETCAKAE K I T E R T 0 1 1 0 0 1 2 0 0 2 3 0 0 0 2 1 2 0 1 0 0 0 16 0 1886.0149 O00425 O00425 310 325 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 2.288E-09 111.39 2 1.6508 1.7389 1.2962 2 Median 1.6508 1.7389 1.2962 2 0 Median NaN NaN NaN 0 0 Median 63031000 23071000 39961000 63031000 23071000 39961000 0 0 0 6837 1364 7001 18148;18149 28411;28412;28413;28414;28415;28416;28417 28415 7 ITLDNAYMEK SGTAEVELKKGATLKITLDNAYMEKCDENI GATLKITLDNAYMEKCDENILWLDYKNICK K I T E K C 1 0 1 1 0 0 1 0 0 1 1 1 1 0 0 0 1 0 1 0 0 0 10 0 1196.5747 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 V9HWB8 142 151 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 8.6125E-09 122.33 2 3.6063 3.8491 7.0176 2 Median 3.6063 3.8491 7.0176 2 0 Median NaN NaN NaN 0 0 Median 91335000 21090000 70245000 91335000 21090000 70245000 0 0 0 6838 1481 7002 18150;18151 28418;28419;28420 28420 1238 3 ITLETDEDMVTEIR MFFFLAQTEQGDIFKITLETDEDMVTEIRL KITLETDEDMVTEIRLKYFDTVPVAAAMCV K I T I R L 0 1 0 2 0 0 3 0 0 2 1 0 1 0 0 0 3 0 0 1 0 0 14 0 1663.7975 A8K6V3;Q15393 A8K6V3 313 326 SF3B3 Splicing factor 3B subunit 3 yes no 2 1.4517E-42 159.94 2 1.4108 1.4087 NaN 1 Median 1.4108 1.4087 NaN 1 0 Median NaN NaN NaN 0 0 Median 25121000 6476300 18645000 25121000 6476300 18645000 0 0 0 6839 764 7003 18152;18153 28421;28422 28422 588 2 ITLSSSSEEYQK DYWDSSALPDPGFQKITLSSSSEEYQKVWN FQKITLSSSSEEYQKVWNLFNRTLPFYFVQ K I T Q K V 0 0 0 0 0 1 2 0 0 1 1 1 0 0 0 4 1 0 1 0 0 0 12 0 1370.6565 A4D1T0;Q9H0J9 A4D1T0 501 512 ZC3HDC1;PARP12 Poly [ADP-ribose] polymerase 12 yes no 2 0.00068455 67.334 1 0.96166 0.96065 NaN 1 Median 0.96166 0.96065 NaN 1 0 Median NaN NaN NaN 0 0 Median 9738400 5281900 4456500 9738400 5281900 4456500 0 0 0 6840 665 7004 18154 28423 28423 1 ITMIAEPLEK SSLKCFAETPNKKNKITMIAEPLEKGLAED NKKNKITMIAEPLEKGLAEDIENEVVQITW K I T E K G 1 0 0 0 0 0 2 0 0 2 1 1 1 0 1 0 1 0 0 0 0 0 10 0 1143.6209 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2;K7EP67 B4DZB1 636 645 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0014799 66.273 2 1.2786 1.3064 6.8394 2 Median 1.2786 1.3064 6.8394 2 0 Median NaN NaN NaN 0 0 Median 39869000 19355000 20514000 39869000 19355000 20514000 0 0 0 6841 794 7005 18155;18156 28424;28425;28426 28426 637 3 ITNDFYPEEDGK KLKNVIHKIFSKFGKITNDFYPEEDGKTKG FGKITNDFYPEEDGKTKGYIFLEYASPAHA K I T G K T 0 0 1 2 0 0 2 1 0 1 0 1 0 1 1 0 1 0 1 0 0 0 12 0 1426.6252 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q86UM1;C9JZG1 Q96G38 26 37 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 2 2.5406E-05 100.88 1 1 1.1702 1.0937 61.093 2 Median 1.6552 1.6846 NaN 1 0 Median 0.82728 0.71004 NaN 1 0 Median 18321000 7459200 10862000 16918000 6694700 10223000 1403500 764500 639040 6842 241 7006 18157;18158 28427;28428;28429;28430 28427 4 ITNEQEETYSLSQSSGK QGDRENVLCNKKEKRITNEQEETYSLSQSS NEQEETYSLSQSSGKFHQESKFDKGQNSLT R I T G K F 0 0 1 0 0 2 3 1 0 1 1 1 0 0 0 4 2 0 1 0 0 0 17 0 1899.8698 Q562F6;B7Z7S9 Q562F6 496 512 SGOL2 Shugoshin-like 2 yes no 2 1.527E-12 115.8 2 1.0602 1.0886 4.6734 2 Median 1.0602 1.0886 4.6734 2 0 Median NaN NaN NaN 0 0 Median 20489000 9181700 11308000 20489000 9181700 11308000 0 0 0 6843 1795 7007 18159;18160 28431;28432;28433;28434;28435 28432 5 ITNLTQQLEQASIVK ELEGMRRSLKEQAIKITNLTQQLEQASIVK ITNLTQQLEQASIVKKRSEDDLRQQRDVLD K I T V K K 1 0 1 0 0 3 1 0 0 2 2 1 0 0 0 1 2 0 0 1 0 0 15 0 1684.9359 P15924 P15924 1612 1626 DSP Desmoplakin yes yes 2 7.6219E-16 130.56 2 2 0.54701 0.43961 20.8 3 Median 0.54701 0.56049 NaN 1 0 Median 0.5005 0.40358 12.092 2 0 Median 45332000 31978000 13354000 35202000 25364000 9837900 10129000 6613400 3516000 6844 1486 7008 18161;18162;18163;18164 28436;28437;28438;28439;28440;28441;28442 28436 7 ITPAHDQNDYEVGQR FDEFVDMDFGTGAVKITPAHDQNDYEVGQR ITPAHDQNDYEVGQRHGLEAISIMDSRGAL K I T Q R H 1 1 1 2 0 2 1 1 1 1 0 0 0 0 1 0 1 0 1 1 0 0 15 0 1741.802 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 592 606 VARS Valine--tRNA ligase yes no 2;3 6.789E-06 87.148 3 1 0.93179 1.0402 36.755 3 Median 1.0085 1.0743 4.5666 2 0 Median 0.63359 0.56981 NaN 1 0 Median 74093000 41204000 32889000 71839000 39817000 32023000 2253100 1387300 865840 6845 363 7009 18165;18166;18167;18168 28443;28444;28445;28446 28445 4 ITPENLPQILLQLK SARDLDELSRYPEDKITPENLPQILLQLKR KITPENLPQILLQLKRRRTEEGPTLSYGRD K I T L K R 0 0 1 0 0 2 1 0 0 2 4 1 0 0 2 0 1 0 0 0 0 0 14 0 1618.9658 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991 D6REM6 133 146 MATR3;DKFZp686K23100 Matrin-3 yes no 2 3.0569E-15 136.96 2 1.5217 1.6688 0.78978 2 Median 1.5217 1.6688 0.78978 2 0 Median NaN NaN NaN 0 0 Median 93665000 40173000 53492000 93665000 40173000 53492000 0 0 0 6846 542 7010 18169;18170 28447;28448;28449;28450 28447 4 ITPSYVAFTPEGER KNGRVEIIANDQGNRITPSYVAFTPEGERL RITPSYVAFTPEGERLIGDAAKNQLTSNPE R I T E R L 1 1 0 0 0 0 2 1 0 1 0 0 0 1 2 1 2 0 1 1 0 0 14 0 1565.7726 V9HWB4;P11021;B4DEF7 V9HWB4 61 74 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.00018067 72.089 2 2 0.74392 0.70891 33.77 4 Median 0.86431 0.94536 0.26437 2 0 Median 0.62342 0.52683 1.54 2 0 Median 99597000 56019000 43578000 86890000 48629000 38262000 12706000 7390200 5316200 6847 1466 7011 18171;18172;18173;18174 28451;28452;28453;28454;28455;28456;28457;28458 28452 8 ITPVTVK DSSSEDEPPKNQKPKITPVTVKAQTKAPPK PPKNQKPKITPVTVKAQTKAPPKPARAAPK K I T V K A 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 2 0 0 2 0 0 7 0 756.47454 B2RAU8;A0A0A0MRM9;Q14978;S4R349;S4R3C2 B2RAU8 187 193 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.032931 64.757 2 1.114 1.2227 2.6868 2 Median 1.114 1.2227 2.6868 2 0 Median NaN NaN NaN 0 0 Median 125720000 56649000 69071000 125720000 56649000 69071000 0 0 0 6848 468 7012 18175;18176 28459;28460 28459 2 ITQDIFQQLLK SFDIFGRTTTPQQTKITQDIFQQLLKRGFV QQTKITQDIFQQLLKRGFVLQDTVEQLRCE K I T L K R 0 0 0 1 0 3 0 0 0 2 2 1 0 1 0 0 1 0 0 0 0 0 11 0 1345.7606 A8K492;P56192;B4DF61;B4E0E9;H0YHV5 A8K492 365 375 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 2.0714E-12 141.48 1 2 3.2261 1.0975 63.992 3 Plateau 3.2365 3.3039 NaN 1 0 Median 1.3645 1.0907 0.88112 2 0 Median 40802000 13249000 27552000 31354000 9321800 22032000 9447200 3927200 5520000 6849 732 7013 18177;18178;18179 28461;28462;28463;28464 28461 4 ITQDTLYWNNYK YKPVAIQTYPILGEKITQDTLYWNNYKTPV GEKITQDTLYWNNYKTPVQIKEFGAVSKVD K I T Y K T 0 0 2 1 0 1 0 0 0 1 1 1 0 0 0 0 2 1 2 0 0 0 12 0 1557.7464 Q8TED0;D6RF65 Q8TED0 19 30 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 8.3022E-30 173.37 2 2 0.94806 0.87572 13.694 4 Median 0.69963 0.76254 14.513 2 0 Median 1.153 0.9191 1.7781 2 0 Median 110690000 59995000 50700000 81037000 46445000 34592000 29658000 13550000 16108000 6850 1936 7014 18180;18181;18182;18183 28465;28466;28467;28468;28469;28470;28471;28472 28471 8 ITQQGTDPLVLAVQSK TYIPKDSKKKKHELKITQQGTDPLVLAVQS TQQGTDPLVLAVQSKEQAEQWLKVIKEAYS K I T S K E 1 0 0 1 0 3 0 1 0 1 2 1 0 0 1 1 2 0 0 2 0 0 16 0 1696.9359 Q8N556 Q8N556 219 234 AFAP1 Actin filament-associated protein 1 yes yes 2 4.8029E-05 78.486 3 1 1.7772 1.5684 2.1086 2 Median 1.62 1.592 NaN 1 0 Median 1.9497 1.5452 NaN 1 0 Median 32903000 9008500 23895000 28112000 7387800 20724000 4791600 1620700 3170900 6851 1910 7015 18184;18185;18186;18187 28473;28474;28475;28476;28477;28478 28476 6 ITQSNAILR LDFPNLPYLLDGKNKITQSNAILRYIARKH LDGKNKITQSNAILRYIARKHNMCGETEEE K I T L R Y 1 1 1 0 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 9 0 1014.5822 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3;Q9UE37;E9PLF1;E9PHN7;A8HT81;E9PHN6;Q6ZSP8;Q5T8Q9;Q0D2I8;F6XZQ7;P28161 Q6FGJ9 74 82 GSTM3;GSTmu3;GSTM2;GSTM5 Glutathione S-transferase Mu 3;Glutathione S-transferase Mu 2 no no 2 0.00070403 107.59 2 1 2.4004 2.7005 0.013697 2 Median 2.4004 2.7005 0.013697 2 0 Median NaN NaN NaN 0 0 Median 212210000 53755000 158450000 209370000 53755000 155610000 2837800 0 2837800 6852 1503 7016 18188;18189;18190 28479;28480;28481;28482 28480 3 ITQYLIR WPRFIRHKCKQRFTKITQYLIRIRKLTLKR KCKQRFTKITQYLIRIRKLTLKRQRKLVPL K I T I R I 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 1 0 1 0 0 0 7 0 905.53345 Q9BXY0;H0YBV6 Q9BXY0 116 122 MAK16 Protein MAK16 homolog yes no 2 0.026656 75.311 2 0.83549 0.94477 5.5234 2 Median 0.83549 0.94477 5.5234 2 0 Median NaN NaN NaN 0 0 Median 134580000 67323000 67254000 134580000 67323000 67254000 0 0 0 6853 2016 7017 18191;18192 28483;28484;28485 28483 3 ITSCIFQLLQEAGIK ARKNHLEGKAAISNKITSCIFQLLQEAGIK ITSCIFQLLQEAGIKTAFTRKCGETAFIAP K I T I K T 1 0 0 0 1 2 1 1 0 3 2 1 0 1 0 1 1 0 0 0 0 0 15 0 1719.9229 E9PBS1;A0A024RD93;P22234;B4DGX3 E9PBS1 60 74 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 1.4168E-22 148.78 2 1.2115 1.205 10.019 2 Median 1.2115 1.205 10.019 2 0 Median NaN NaN NaN 0 0 Median 50140000 22645000 27495000 50140000 22645000 27495000 0 0 0 6854 380 7018 18193;18194 28486;28487 28487 2 ITSEAIGQLHR YRGHTNQDHVHAVWKITSEAIGQLHRSLES AVWKITSEAIGQLHRSLESCPGETVVAEDP K I T H R S 1 1 0 0 0 1 1 1 1 2 1 0 0 0 0 1 1 0 0 0 0 0 11 0 1223.6622 A0A024R0F1;Q9UNY4 A0A024R0F1 538 548 TTF2 Transcription termination factor 2 yes no 2;3 0.00043772 78.516 2 0.65458 0.6572 NaN 1 Median 0.65458 0.6572 NaN 1 0 Median NaN NaN NaN 0 0 Median 47109000 39575000 7533900 47109000 39575000 7533900 0 0 0 6855 44 7019 18195;18196 28488;28489;28490 28489 3 ITSEMGSASQANIR PYLEGILSQVIHLEKITSEMGSASQANIRL KITSEMGSASQANIRLTSLKKTLATTLAPR K I T I R L 2 1 1 0 0 1 1 1 0 2 0 0 1 0 0 3 1 0 0 0 0 0 14 0 1463.7038 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8 B2RWN5 1792 1805 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 3.5463E-58 199.09 3 4 1.1804 1.0967 25.77 6 Median 1.1804 1.3318 4.9957 2 0 Median 1.0719 0.91032 21.521 4 0 Median 153170000 72918000 80248000 133370000 63518000 69856000 19793000 9399700 10393000 6856 897 7020;7021 18197;18198;18199;18200;18201;18202;18203 28491;28492;28493;28494;28495;28496;28497;28498;28499;28500;28501;28502 28492 710 12 ITSGPFEPDLYK QFKFTVLLMPNGPMRITSGPFEPDLYKSEM PMRITSGPFEPDLYKSEMEVQDAELKALLQ R I T Y K S 0 0 0 1 0 0 1 1 0 1 1 1 0 1 2 1 1 0 1 0 0 0 12 0 1365.6816 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08 A8K6Y1 333 344 PA2G4 Proliferation-associated protein 2G4 yes no 2 2.3368E-05 100.48 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28127000 0 28127000 25409000 0 25409000 2718300 0 2718300 6857 328 7022 18204;18205 28503;28504 28503 2 ITSPLMEPSSIEK GIQTSEGVCLAVEKRITSPLMEPSSIEKIV KRITSPLMEPSSIEKIVEIDAHIGCAMSGL R I T E K I 0 0 0 0 0 0 2 0 0 2 1 1 1 0 2 3 1 0 0 0 0 0 13 0 1430.7327 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 54 66 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 2 2.0475E-06 100.88 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32526000 0 32526000 32526000 0 32526000 0 0 0 6858 595 7023 18206;18207 28505;28506 28506 454 2 ITSQIFIGPTYYQR LRGNEVLYNGFTGRKITSQIFIGPTYYQRL KITSQIFIGPTYYQRLKHMVDDKIHSRARG K I T Q R L 0 1 0 0 0 2 0 1 0 3 0 0 0 1 1 1 2 0 2 0 0 0 14 0 1685.8777 C9J2Y9;B4DHJ3;P30876;B4DR40;C9J4M6;B4DH29;B2WTN6 C9J2Y9 1030 1043 POLR2B;rpB2 DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.0012859 54.776 2 0.87334 0.91298 NaN 1 Median 0.87334 0.91298 NaN 1 0 Median NaN NaN NaN 0 0 Median 10702000 6502900 4199400 10702000 6502900 4199400 0 0 0 6859 975 7024 18208;18209 28507;28508;28509;28510 28507 4 ITTHFELK IMGAPGSGKGTVSSRITTHFELKHLSSGDL KGTVSSRITTHFELKHLSSGDLLRDNMLRG R I T L K H 0 0 0 0 0 0 1 0 1 1 1 1 0 1 0 0 2 0 0 0 0 0 8 0 987.53893 Q7Z4Y4;Q9UIJ7 Q7Z4Y4 27 34 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 2 0.00424 91.626 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6860 1878 7025 18210;18211;18212;18213;18214 28511;28512;28513;28514;28515 28513 5 ITTVIQHVFQNLILGSK ERIKIIRQNLQMEIKITTVIQHVFQNLILG TVIQHVFQNLILGSKVNWAEDPALKEIVLQ K I T S K V 0 0 1 0 0 2 0 1 1 3 2 1 0 1 0 1 2 0 0 2 0 0 17 0 1910.0989 B3KVZ3;A0A0S2Z5T0;Q9H3R5;H0Y9E6 B3KVZ3 189 205 CENPH Centromere protein H yes no 3 0.0004445 58.09 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3431100 3431100 0 3431100 3431100 0 0 0 0 6861 585 7026 18215 28516;28517 28516 2 ITTVNSVLPQNSVLGGVLK PDAKLDKTCISRAMKITTVNSVLPQNSVLG NSVLPQNSVLGGVLKTKQQLKTLNHFDLTN K I T L K T 0 0 2 0 0 1 0 2 0 1 3 1 0 0 1 2 2 0 0 4 0 0 19 0 1938.115 Q8NCN4 Q8NCN4 570 588 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 2 3.1682E-05 55.314 1 2 1.5202 1.2152 35.216 3 Median 0.68244 0.71121 NaN 1 0 Median 1.5981 1.2956 9.0648 2 0 Median 27036000 12970000 14066000 10027000 6261700 3765700 17009000 6708400 10301000 6862 1923 7027 18216;18217;18218 28518;28519;28520 28520 3 ITVAECIETQSK TSEPEGDWFCPECEKITVAECIETQSKAMT CEKITVAECIETQSKAMTMLTIEQLSYLLK K I T S K A 1 0 0 0 1 1 2 0 0 2 0 1 0 0 0 1 2 0 0 1 0 0 12 0 1377.681 A0A087WVZ6;A6H8Y8;A0A087WV57;Q2HXV5;Q5TH12;H7C4X9;A0A087WYS3;Q9ULU4 A0A087WVZ6 128 139 ZMYND8 Protein kinase C-binding protein 1 no no 2 6.6475E-18 143.5 2 2 0.98612 0.88074 48.877 4 Median 0.59916 0.59631 1.8642 2 0 Median 1.7473 1.3813 10.352 2 0 Median 46181000 26113000 20069000 38421000 23358000 15063000 7760300 2754500 5005800 6863 422;1317 7028 18219;18220;18221;18222 28521;28522;28523;28524;28525 28521 5 ITVAWCK QIALGTSKLNYLDPRITVAWCKKWGVPIEK KLNYLDPRITVAWCKKWGVPIEKIYNKTQR R I T C K K 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 7 0 876.45276 P11387;B9EG90;Q9BVT2 P11387 728 734 TOP1 DNA topoisomerase 1 yes no 2 0.028425 71.949 1 1 0.85662 0.9712 NaN 1 Median 0.85662 0.9712 NaN 1 0 Median NaN NaN NaN 0 0 Median 102750000 55407000 47347000 93812000 46464000 47347000 8942700 8942700 0 6864 1470 7029 18223;18224 28526;28527;28528 28526 3 ITVENEVDLDGPPR RWEQELNAKRSHLGRITVENEVDLDGPPRA RITVENEVDLDGPPRAFVYINEYRVGEGIT R I T P R A 0 1 1 2 0 0 2 1 0 1 1 0 0 0 2 0 1 0 0 2 0 0 14 0 1552.7733 O43463;Q14828 O43463 145 158 SUV39H1;MG44 Histone-lysine N-methyltransferase SUV39H1 yes no 2 8.3223E-47 184.03 2 2 1.2934 1.2795 13.455 4 Median 0.99934 1.1324 2.9476 2 0 Median 1.6684 1.4265 1.0603 2 0 Median 260820000 123400000 137420000 208740000 103150000 105590000 52082000 20252000 31830000 6865 1385 7030 18225;18226;18227;18228 28529;28530;28531;28532;28533;28534 28533 6 ITVLEALR EARLGKPSLVRETSRITVLEALRHPIQVSR LVRETSRITVLEALRHPIQVSRRLLSRPQD R I T L R H 1 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 8 0 913.55967 Q9NVI7;H0Y2W2;Q96T67;Q5T9A4;Q9H834;Q5T2N8;Q8N3E6 Q9NVI7 339 346 ATAD3A;ATAD3B;ATAD3C;DKFZp761L1023 ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3C yes no 2 0.0041498 94.539 1 1.6474 1.7217 NaN 1 Median 1.6474 1.7217 NaN 1 0 Median NaN NaN NaN 0 0 Median 22556000 9699000 12857000 22556000 9699000 12857000 0 0 0 6866 2074 7031 18229 28535;28536;28537 28537 3 ITVLQLSALLK HGRRQHLAVSHEKGKITVLQLSALLKQADS EKGKITVLQLSALLKQADSSKRKLTLTRLA K I T L K Q 1 0 0 0 0 1 0 0 0 1 4 1 0 0 0 1 1 0 0 1 0 0 11 0 1197.7697 A0A0A0MSW0;Q5T4S7 A0A0A0MSW0 631 641 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.00038376 82.749 4 1.4931 1.6495 NaN 1 Median 1.4931 1.6495 NaN 1 0 Median NaN NaN NaN 0 0 Median 3386200 1158900 2227300 3386200 1158900 2227300 0 0 0 6867 482 7032 18230;18231;18232;18233 28538;28539;28540;28541 28541 4 ITVPGNFQGHSGAQCITCSYK YEMVSRVMKALVNRKITVPGNFQGHSGAQC FQGHSGAQCITCSYKASSGLLYPLERGFIY K I T Y K A 1 0 1 0 2 2 0 3 1 2 0 1 0 1 1 2 2 0 1 1 0 0 21 0 2324.0678 A0A024R4Z6;Q08945 A0A024R4Z6 326 346 SSRP1 FACT complex subunit SSRP1 yes no 3 4.7563E-12 97.69 2 2 0.79292 0.78597 5.0869 4 Median 0.64979 0.75041 1.9037 2 0 Median 0.95848 0.81743 0.90682 2 0 Median 565480000 334580000 230910000 420090000 260090000 160000000 145390000 74484000 70908000 6868 167 7033 18234;18235;18236;18237 28542;28543;28544;28545;28546;28547;28548;28549 28544 8 ITVPLSVISQPMK TTVVSTSQAGKLPTRITVPLSVISQPMKGK TRITVPLSVISQPMKGKSVVTAPIIKGNLG R I T M K G 0 0 0 0 0 1 0 0 0 2 1 1 1 0 2 2 1 0 0 2 0 0 13 0 1411.8109 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1184 1196 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.008573 48.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6869 135 7034 18238 28550 28550 114 1 ITVPLVSEVQIAQLR IILDIISNYLVLPNRITVPLVSEVQIAQLR ITVPLVSEVQIAQLRFPVPKGVLRIHFIEA R I T L R F 1 1 0 0 0 2 1 0 0 2 2 0 0 0 1 1 1 0 0 3 0 0 15 0 1664.9825 H7BXI1;A0A087WXU3;A0FGR8 H7BXI1 307 321 ESYT2 Extended synaptotagmin-2 yes no 2 2.8814E-06 98.353 2 2.8608 2.9245 4.2968 2 Median 2.8608 2.9245 4.2968 2 0 Median NaN NaN NaN 0 0 Median 16018000 4242200 11776000 16018000 4242200 11776000 0 0 0 6870 432 7035 18239;18240 28551;28552 28552 1 ITVTSEVPFSK NLGGGVVTIERSKSKITVTSEVPFSKRYLK SKSKITVTSEVPFSKRYLKYLTKKYLKKNN K I T S K R 0 0 0 0 0 0 1 0 0 1 0 1 0 1 1 2 2 0 0 2 0 0 11 0 1206.6496 Q7Z4W8;P35268;K7EJT5;K7EP65;K7EKS7;K7ELC4;K7EMH1;K7ERI7 Q7Z4W8 70 80 RPL22 60S ribosomal protein L22 yes no 2 2.3069E-12 140.45 2 2 0.95901 0.98714 2.9851 4 Median 0.83496 1 0.16166 2 0 Median 1.0972 0.957 2.7133 2 0 Median 4302900000 2325800000 1977100000 3836100000 2096800000 1739300000 466810000 229040000 237770000 6871 1543 7036 18241;18242;18243;18244 28553;28554;28555;28556;28557;28558;28559;28560;28561 28556 9 ITVVPSAK ______________________________ ______________________________ K I T A K D 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 2 0 0 8 0 813.496 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4 Q8N4P8 7 14 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0058868 89.046 1 2 1.6151 1.3807 4.2294 3 Median 1.2103 1.3811 NaN 1 0 Median 1.6665 1.3312 5.1704 2 0 Median 211240000 93644000 117590000 177470000 80969000 96500000 33768000 12675000 21093000 6872 1183 7037 18245;18246;18247 28562;28563;28564;28565 28563 4 IVAALNAR SETGFLTYLDVSVGKIVAALNARAGRLDVM LDVSVGKIVAALNARAGRLDVMSQNPYNAV K I V A R A 3 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 826.50249 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 309 316 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.0024483 99.919 1 2 1.2656 1.0524 6.2799 3 Median 0.87844 0.97321 NaN 1 0 Median 1.2736 1.0769 3.2483 2 0 Median 76606000 36684000 39921000 63888000 31243000 32644000 12718000 5441000 7277000 6873 809 7038 18248;18249;18250 28566;28567;28568 28566 3 IVAERPGTNSTGPAPMAPPR WDLNAWTKSAEAFGKIVAERPGTNSTGPAP PGTNSTGPAPMAPPRAPGPLSKQGSGSSQP K I V P R A 3 2 1 0 0 0 1 2 0 1 0 0 1 0 5 1 2 0 0 1 0 0 20 1 2018.0367 B2R8R5;Q13263;M0R0K9 B2R8R5 408 427 TRIM28 Transcription intermediary factor 1-beta yes no 3 3.2342E-13 100.39 2 1.9684 2.2007 14.864 2 Median 1.9684 2.2007 14.864 2 0 Median NaN NaN NaN 0 0 Median 105830000 38368000 67464000 105830000 38368000 67464000 0 0 0 6874 862 7039 18251;18252 28569;28570;28571;28572 28572 670 4 IVAETMNNYLFGER KGYAFVEFESEDVAKIVAETMNNYLFGERL KIVAETMNNYLFGERLLECHFMPPEKVHKE K I V E R L 1 1 2 0 0 0 2 1 0 1 1 0 1 1 0 0 1 0 1 1 0 0 14 0 1655.7977 Q9BYG3;C9J6C5;B4DSM4 Q9BYG3 101 114 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 5.1174E-05 84.289 3 0.71533 0.58522 15.374 3 Median NaN NaN NaN 0 0 Median 0.71533 0.58522 15.374 3 0 Median 22096000 12590000 9506900 0 0 0 22096000 12590000 9506900 6875 2019 7040 18253;18254;18255 28573;28574;28575;28576;28577 28574 1854 4 IVAIGTSDLDK QPYWEELENLVQSKKIVAIGTSDLDKTQLE QSKKIVAIGTSDLDKTQLEQLYQWAQVKPN K I V D K T 1 0 0 2 0 0 0 1 0 2 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1130.6183 D3DT44;P48507 D3DT44 139 149 GCLM Glutamate--cysteine ligase regulatory subunit yes no 2 0.00041914 79.974 1 3.0756 3.2372 NaN 1 Median 3.0756 3.2372 NaN 1 0 Median NaN NaN NaN 0 0 Median 30654000 8261500 22392000 30654000 8261500 22392000 0 0 0 6876 1188 7041 18256 28578 28578 1 IVALNAHTFLR VDVIFADVAQPDQTRIVALNAHTFLRNGGH DQTRIVALNAHTFLRNGGHFVISIKANCID R I V L R N 2 1 1 0 0 0 0 0 1 1 2 0 0 1 0 0 1 0 0 1 0 0 11 0 1253.7244 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1;A6NHQ2 Q96BS4 184 194 FBL;FBLL1 rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 no no 2;3 5.6812E-06 118.18 4 4 0.846 0.82253 7.783 8 Median 0.78419 0.91295 4.3557 4 0 Median 0.9092 0.79051 2.6696 4 0 Median 2047600000 1152500000 895150000 1725300000 993320000 731960000 322360000 159170000 163190000 6877 1506;683 7042 18257;18258;18259;18260;18261;18262;18263;18264 28579;28580;28581;28582;28583;28584;28585;28586;28587;28588;28589;28590;28591;28592;28593;28594;28595;28596;28597;28598;28599;28600;28601 28579 23 IVALSSSLSNAK SRMRYISSQIERPIRIVALSSSLSNAKDVA PIRIVALSSSLSNAKDVAHWLGCSATSTFN R I V A K D 2 0 1 0 0 0 0 0 0 1 2 1 0 0 0 4 0 0 0 1 0 0 12 0 1188.6714 O75643;A4FU77;B4E150;B4E0P5 O75643 1487 1498 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 3.4669E-18 146.88 2 0.95098 1.0732 4.2772 2 Median 0.95098 1.0732 4.2772 2 0 Median NaN NaN NaN 0 0 Median 143460000 73644000 69817000 143460000 73644000 69817000 0 0 0 6878 1411 7043 18265;18266 28602;28603;28604;28605 28605 4 IVAVTGAEAQK FVIVTEEAIAKGIRRIVAVTGAEAQKALRK GIRRIVAVTGAEAQKALRKAESLKKCLSVM R I V Q K A 3 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1085.6081 P49588;H3BPK7 P49588 752 762 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.0092286 60.102 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18017000 0 18017000 18017000 0 18017000 0 0 0 6879 1583 7044 18267 28606 28606 1 IVDDWANDGWGLK SDIFFDNFIICADRRIVDDWANDGWGLKKA RRIVDDWANDGWGLKKAADGAAEPGVVGQM R I V L K K 1 0 1 3 0 0 0 2 0 1 1 1 0 0 0 0 0 2 0 1 0 0 13 0 1487.7045 P27824 P27824 446 458 CANX Calnexin yes yes 2 0.00073805 81.017 2 1 1.3497 1.3331 NaN 1 Median 1.3497 1.3331 NaN 1 0 Median NaN NaN NaN 0 0 Median 8423900 4100500 4323400 8423900 4100500 4323400 0 0 0 6880 1526 7045 18268;18269;18270 28607;28608;28609;28610 28609 4 IVDLNFLIGPK CKLGLTATLVREDDKIVDLNFLIGPKLYEA EDDKIVDLNFLIGPKLYEANWMELQNNGYI K I V P K L 0 0 1 1 0 0 0 1 0 2 2 1 0 1 1 0 0 0 0 1 0 0 11 0 1227.7227 G3V1S1;B3KTH1;B3KRG2;A8K359;P19447;Q53HW5 G3V1S1 413 423 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 2 0.012268 56.258 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1106200 0 1106200 0 0 0 1106200 0 1106200 6881 717 7046 18271;18272 28611;28612 28611 2 IVDNVRPDR ADRMFDMGFEPQVMRIVDNVRPDRQTVMFS EPQVMRIVDNVRPDRQTVMFSATFPRAMEA R I V D R Q 0 2 1 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 2 0 0 9 1 1082.5833 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 546 554 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 0.0074428 46.462 2 1.0498 1.1638 1.4779 2 Median 1.0498 1.1638 1.4779 2 0 Median NaN NaN NaN 0 0 Median 57272000 26857000 30416000 57272000 26857000 30416000 0 0 0 6882 511 7047 18273;18274 28613;28614 28614 2 IVDQIRPDR ADRMLDMGFEPQIRKIVDQIRPDRQTLMWS EPQIRKIVDQIRPDRQTLMWSATWPKEVRQ K I V D R Q 0 2 0 2 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 9 1 1110.6146 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3KRZ1;J3QSF1;Q59F66;Q92841 B4DN41 254 262 DDX5;DKFZp686J01190;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 2;3 0.00042601 88.948 4 1 1.3928 1.6408 41.028 5 Median 1.3971 1.6566 26.635 4 0 Median 0.81472 0.68916 NaN 1 0 Median 566970000 239020000 327950000 557520000 233910000 323610000 9448100 5108900 4339200 6883 1009;1801 7048 18275;18276;18277;18278;18279 28615;28616;28617;28618;28619;28620 28617 6 IVDVIGEK SVPLLKSLEVSERMKIVDVIGEKIYKDGER EVSERMKIVDVIGEKIYKDGERIITQTKSN K I V E K I 0 0 0 1 0 0 1 1 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 871.50148 A0A0S2Z472;A8KAH7;A0A024R2W3;P13861;H7C4A9 A0A0S2Z472 273 280 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 0.052162 53.968 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6884 124 7049 18280 28621 28621 1 IVDVNFQSLLDEDQAPPSSLLVHK ESVVGFPFLDKRYRKIVDVNFQSLLDEDQA LDEDQAPPSSLLVHKLIFQYVEEKESWKKT K I V H K L 1 0 1 3 0 2 1 0 1 1 4 1 0 1 2 3 0 0 0 3 0 0 24 0 2663.3806 Q8NG31;H0YCZ2 Q8NG31 2177 2200 CASC5 Protein CASC5 yes no 3 0.0011006 30.882 1 2 1.039 0.83485 2.6549 2 Median NaN NaN NaN 0 0 Median 1.039 0.83485 2.6549 2 0 Median 51973000 19696000 32277000 7961600 0 7961600 44012000 19696000 24316000 6885 1928 7050 18281;18282;18283 28622;28623;28624;28625 28623 4 IVECRPPVVEPDINSTVEHDENR WSTTDARKRCVYTCKIVECRPPVVEPDINS VEPDINSTVEHDENRTIAHSPTSFTESSSK K I V N R T 0 2 2 2 1 0 4 0 1 2 0 0 0 0 3 1 1 0 0 4 0 0 23 1 2703.2922 Q03164 Q03164 2071 2093 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 4 0.0012221 24.645 1 2 2.192 1.8873 51.72 3 Median 0.72303 0.7918 NaN 1 0 Median 2.2057 1.9372 3.686 2 0 Median 33103000 16166000 16937000 19783000 11864000 7919000 13320000 4302300 9017700 6886 1680 7051 18284;18285;18286 28626;28627;28628;28629 28626 4 IVEDAPPIDLQAEAQHASGEVEEPPR QLDSFDEFIQMSVQRIVEDAPPIDLQAEAQ AEAQHASGEVEEPPRYLLKFEQIYLSKPTH R I V P R Y 4 1 0 2 0 2 5 1 1 2 1 0 0 0 4 1 0 0 0 2 0 0 26 0 2796.3566 C9J2Y9;B4DHJ3;P30876 C9J2Y9 51 76 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 1.638E-12 64.68 2 2 1.0186 1.0135 11.528 4 Median 0.96553 1.0135 7.0707 2 0 Median 1.1763 1.014 18.673 2 0 Median 56368000 29518000 26850000 48162000 25754000 22407000 8206400 3764000 4442400 6887 975 7052 18287;18288;18289;18290 28630;28631;28632;28633;28634;28635;28636;28637;28638;28639 28634 10 IVELAHSGAR VFVNGRPLPDSTRQKIVELAHSGARPCDIS STRQKIVELAHSGARPCDISRILQVSNGCV K I V A R P 2 1 0 0 0 0 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1051.5774 D1KF47;Q66SS1;B3KQG1;F1T0F8;D3DQZ8;P26367;Q6VMP0;B1B1I8;Q2XU32;E9PKM0;B1B1I9;B1B1J0 D1KF47 29 38 PAX6 Paired box protein Pax-6 yes no 3 0.002193 56.548 1 0.3707 0.37198 NaN 1 Median 0.3707 0.37198 NaN 1 0 Median NaN NaN NaN 0 0 Median 9202000 6900100 2301900 9202000 6900100 2301900 0 0 0 6888 927 7053 18291 28640 28640 1 IVELFR KGDPIVQHRPMLEERIVELFRNLMKSAFVV QHRPMLEERIVELFRNLMKSAFVVERQPCM R I V F R N 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 6 0 775.45922 G8JLH9;B4DNP0;B7ZA24;B4DVR6;B5BTZ6;P40763 G8JLH9 211 216 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 2 0.048331 75.131 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6889 1015 7054 18292 28641 28641 1 IVEPYIAWGYPNLK GTFVKLNKASINMLRIVEPYIAWGYPNLKS RIVEPYIAWGYPNLKSVNELIYKRGYGKIN R I V L K S 1 0 1 0 0 0 1 1 0 2 1 1 0 0 2 0 0 1 2 1 0 0 14 0 1661.8817 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 146 159 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2 8.0494E-10 121.6 3 2 0.76117 0.87914 NaN 1 Median 0.76117 0.87914 NaN 1 0 Median NaN NaN NaN 0 0 Median 511500000 313570000 197930000 457700000 259770000 197930000 53797000 53797000 0 6890 240 7055 18293;18294;18295;18296;18297 28642;28643;28644;28645;28646;28647;28648 28646 7 IVEPYVTWGFPNLK GVFVKVTPQNLKMLRIVEPYVTWGFPNLKS RIVEPYVTWGFPNLKSVRELILKRGQAKVK R I V L K S 0 0 1 0 0 0 1 1 0 1 1 1 0 1 2 0 1 1 1 2 0 0 14 0 1661.8817 A0A024RD36;Q6DKI1;R4GMU7;B3KMP5;A8K5J5 A0A024RD36 142 155 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 1.1755E-06 129.7 2 2 1.7631 1.3898 7.3205 3 Median 1.1757 1.2975 NaN 1 0 Median 1.791 1.4448 5.4893 2 0 Median 93334000 33702000 59632000 64331000 22074000 42257000 29003000 11628000 17375000 6891 378 7056 18298;18299;18300;18301 28649;28650;28651;28652 28650 4 IVEQDTMPPK ADRMLDMGFEPQIRRIVEQDTMPPKGVRHT PQIRRIVEQDTMPPKGVRHTMMFSATFPKE R I V P K G 0 0 0 1 0 1 1 0 0 1 0 1 1 0 2 0 1 0 0 1 0 0 10 0 1156.5798 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010;B4E132 A0A0D9SFB3 364 373 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.00053206 76.221 1 1.893 1.9135 NaN 1 Median 1.893 1.9135 NaN 1 0 Median NaN NaN NaN 0 0 Median 6893300 2114800 4778500 6893300 2114800 4778500 0 0 0 6892 522 7057 18302 28653 28653 382 1 IVETEAYLGPEDEAAHSR VLVRRLPNGTELRGRIVETEAYLGPEDEAA TEAYLGPEDEAAHSRGGRQTPRNRGMFMKP R I V S R G 3 1 0 1 0 0 4 1 1 1 1 0 0 0 1 1 1 0 1 1 0 0 18 0 1985.933 A2IDA3;Q1W6H1;P29372 A2IDA3 104 121 MPG DNA-3-methyladenine glycosylase yes no 3 0.0017033 33.142 1 0.54637 0.45329 NaN 1 Median NaN NaN NaN 0 0 Median 0.54637 0.45329 NaN 1 0 Median 5101000 3288400 1812500 0 0 0 5101000 3288400 1812500 6893 651 7058 18303 28654;28655 28654 2 IVETIEELK PVPMFLPTTLESTDKIVETIEELKVKIPSN LESTDKIVETIEELKVKIPSNPLEADILAM K I V L K V 0 0 0 0 0 0 3 0 0 2 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1072.6016 A6NHB5;Q14202;A6NHN7 A6NHB5 914 922 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.0010227 91.069 2 1 0.69195 0.71986 48.264 3 Median 0.67237 0.67938 8.1867 2 0 Median 1.9014 1.5579 NaN 1 0 Median 59198000 36181000 23016000 56683000 35167000 21516000 2514200 1014300 1499900 6894 681 7059 18304;18305;18306 28656;28657;28658;28659 28658 4 IVEVLLMK TNEKALEAVFGKYGRIVEVLLMKDRETNKS VFGKYGRIVEVLLMKDRETNKSRGFAFVTF R I V M K D 0 0 0 0 0 0 1 0 0 1 2 1 1 0 0 0 0 0 0 2 0 0 8 0 943.57763 H0Y6E7;H3BT71;P38159;H3BR27;A8K8A6;O75526 H0Y6E7 36 43 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 2 0.0041951 77.674 1 1.6915 1.7922 NaN 1 Median 1.6915 1.7922 NaN 1 0 Median NaN NaN NaN 0 0 Median 35849000 11466000 24383000 35849000 11466000 24383000 0 0 0 6895 1284 7060 18307 28660 28660 982 1 IVFLHNDR SEVVTFEILSDDYSKIVFLHNDRYIEFHSQ LSDDYSKIVFLHNDRYIEFHSQSGFYYKTR K I V D R Y 0 1 1 1 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 8 0 1012.5454 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 110 117 NOL10 Nucleolar protein 10 yes no 2;3 0.0041442 81.548 3 1 0.96984 1.096 20.544 4 Median 0.9302 1.0666 18.071 3 0 Median 1.513 1.3158 NaN 1 0 Median 284190000 136610000 147590000 281560000 135540000 146020000 2631400 1065600 1565700 6896 2000 7061 18308;18309;18310;18311 28661;28662;28663;28664 28663 4 IVFPSR SAALLALTWTCLLVRIVFPSRAKRQGDIWN LTWTCLLVRIVFPSRAKRQGDIWNKLVEVQ R I V S R A 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 6 0 717.41736 E1NZA1;Q92616;B4DM32 E1NZA1 126 131 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.054024 69.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5150200 5150200 0 5150200 5150200 0 0 0 0 6897 1205 7062 18312 28665 28665 1 IVFSPEEAK RGKGTFESGLKGGVKIVFSPEEAKAVSSQM LKGGVKIVFSPEEAKAVSSQMIGKKLFTKQ K I V A K A 1 0 0 0 0 0 2 0 0 1 0 1 0 1 1 1 0 0 0 1 0 0 9 0 1018.5335 B7ZAF6;E5KS55;Q7Z503;B4DRV2;E5KS60;Q6N0B1;Q9P2R7;A0A0U1RQF8;Q5T9Q5 B7ZAF6 63 71 SUCLA2;DKFZp686D0880 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 2 0.041513 41.429 1 3.5477 3.817 NaN 1 Median 3.5477 3.817 NaN 1 0 Median NaN NaN NaN 0 0 Median 40380000 7743800 32636000 40380000 7743800 32636000 0 0 0 6898 1109 7063 18313 28666 28666 1 IVFVPGCSIPLTIVK EFEDRGFVQVDDGRKIVFVPGCSIPLTIVK IVFVPGCSIPLTIVKSDGGYTYDTSDLAAI K I V V K S 0 0 0 0 1 0 0 1 0 3 1 1 0 1 2 1 1 0 0 3 0 0 15 0 1641.9528 P54136;B4DXW6 P54136 363 377 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.00053563 55.401 2 1.7678 1.8006 0.79761 2 Median 1.7678 1.8006 0.79761 2 0 Median NaN NaN NaN 0 0 Median 26534000 9878800 16656000 26534000 9878800 16656000 0 0 0 6899 1609 7064 18314;18315 28667;28668;28669;28670 28668 4 IVGLQYK HKQIMENAEINNIIKIVGLQYKKNYEDEDS AEINNIIKIVGLQYKKNYEDEDSLKTLRYG K I V Y K K 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 7 0 819.48544 P11388;Q71UH4;Q02880;E9PCY5 P11388 513 519 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.010895 109.88 2 2 1.0368 1.0438 11.951 4 Median 0.79036 0.94483 0.38208 2 0 Median 1.3428 1.1615 1.3954 2 0 Median 3371900000 1834100000 1537700000 3069400000 1707400000 1362000000 302490000 126770000 175730000 6900 1471;1679 7065 18316;18317;18318;18319 28671;28672;28673;28674;28675;28676;28677 28673 7 IVGLTEK KAQINIREDPKEGIKIVGLTEKTVLVALDT EDPKEGIKIVGLTEKTVLVALDTVSCLEQG K I V E K T 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 7 0 758.4538 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 176 182 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.020094 94.407 2 0.87084 0.97547 4.4317 2 Median 0.87084 0.97547 4.4317 2 0 Median NaN NaN NaN 0 0 Median 157370000 85222000 72143000 157370000 85222000 72143000 0 0 0 6901 1803 7066 18320;18321 28678;28679;28680 28680 3 IVGQADGELNITLPEEVTVK HRSVLAACSSYFHSRIVGQADGELNITLPE DGELNITLPEEVTVKGFEPLIQFAYTAKLI R I V V K G 1 0 1 1 0 1 3 2 0 2 2 1 0 0 1 0 2 0 0 3 0 0 20 0 2124.1314 A8K4Q6;O14867;C9JMP6;C9IYR0;C9IYH8 A8K4Q6 63 82 BACH1 Transcription regulator protein BACH1 yes no 2 0.0058794 27.335 1 2.1292 1.7446 NaN 1 Median NaN NaN NaN 0 0 Median 2.1292 1.7446 NaN 1 0 Median 2459900 658140 1801800 0 0 0 2459900 658140 1801800 6902 739 7067 18322 28681 28681 1 IVILEYQPSK GGTKDYIVVGSDSGRIVILEYQPSKNMFEK SDSGRIVILEYQPSKNMFEKIHQETFGKSG R I V S K N 0 0 0 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 1 1 0 0 10 0 1188.6754 A8K6V3;Q15393;J3QL37;J3QRB2 A8K6V3 87 96 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.00051176 85.676 2 2 0.86618 0.80607 30.691 4 Median 1.0167 1.0797 11.378 2 0 Median 0.77232 0.64264 2.0919 2 0 Median 64695000 27307000 37387000 61102000 25223000 35880000 3592400 2084700 1507700 6903 764 7068 18323;18324;18325;18326 28682;28683;28684;28685;28686;28687 28684 6 IVILPDYLEIAR FDLSEEKFELDEDVKIVILPDYLEIARDGL DVKIVILPDYLEIARDGLGGLPDIVRDRVT K I V A R D 1 1 0 1 0 0 1 0 0 3 2 0 0 0 1 0 0 0 1 1 0 0 12 0 1413.8232 A0A140VJZ1;P45974 A0A140VJZ1 122 133 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.00016364 92.062 2 3.2605 3.476 0.41165 2 Median 3.2605 3.476 0.41165 2 0 Median NaN NaN NaN 0 0 Median 55661000 12530000 43131000 55661000 12530000 43131000 0 0 0 6904 613 7069 18327;18328 28688;28689;28690;28691 28691 4 IVIPNEESVVIYYK GVVEKVKNSEEQYNKIVIPNEESVVIYYKI KIVIPNEESVVIYYKIRQQLAKLGKEIEEY K I V Y K I 0 0 1 0 0 0 2 0 0 3 0 1 0 0 1 1 0 0 2 3 0 0 14 0 1664.9025 P42285;A8K6I4;B4E3M6 P42285 615 628 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 5.0733E-06 94.616 1 2 1.3053 1.2857 NaN 1 Median 1.3053 1.2857 NaN 1 0 Median NaN NaN NaN 0 0 Median 40880000 7897900 32982000 24304000 7897900 16406000 16576000 0 16576000 6905 1563 7070 18329;18330;18331 28692;28693;28694 28694 3 IVITGDGDIDHDQALAQAIR KTVKGGISETRIEKRIVITGDGDIDHDQAL DGDIDHDQALAQAIREAREQHPDMSVTRVV R I V I R E 3 1 0 4 0 2 0 2 1 4 1 0 0 0 0 0 1 0 0 1 0 0 20 0 2120.0862 Q59FD8;E9PII3;E9PK52;E9PHY5;O43491;E9PPC9;O60642;Q9UG62;Q6ZSX4;B4DJ76;Q6R5J7 Q59FD8 629 648 EPB41L2;DKFZp564J1082 Band 4.1-like protein 2 yes no 3 3.8323E-14 98.165 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17915000 0 17915000 17915000 0 17915000 0 0 0 6906 1238 7071 18332 28695 28695 1 IVIWDFLTR NRWGTLLAVGCNDGRIVIWDFLTRGIAKII GCNDGRIVIWDFLTRGIAKIISAHIHPVCS R I V T R G 0 1 0 1 0 0 0 0 0 2 1 0 0 1 0 0 1 1 0 1 0 0 9 0 1161.6546 A0A024R9B5;B4DMM7;Q15291 A0A024R9B5 48 56 RBBP5 Retinoblastoma-binding protein 5 yes no 2 0.0089883 60.59 2 0.7356 0.7645 3.953 2 Median 0.7356 0.7645 3.953 2 0 Median NaN NaN NaN 0 0 Median 9074900 4770800 4304000 9074900 4770800 4304000 0 0 0 6907 272 7072 18333;18334 28696;28697 28697 2 IVKPNGEKPDEFESGISQALLELEMNSDLK ______________________________ ISQALLELEMNSDLKAQLRELNITAAKEIE K I V L K A 1 0 2 2 0 1 5 2 0 2 4 3 1 1 2 3 0 0 0 1 0 0 30 2 3329.6701 P62081;B5MCP9 P62081 8 37 RPS7 40S ribosomal protein S7 yes no 4 9.1612E-17 66.432 2 0.53602 0.51588 3.0949 2 Median NaN NaN NaN 0 0 Median 0.53602 0.51588 3.0949 2 0 Median 75956000 45953000 30004000 0 0 0 75956000 45953000 30004000 6908 1631 7073 18335;18336 28698;28699;28700;28701 28698 1413 4 IVLHPDTEHSK LGELLQQFGELKYVRIVLHPDTEHSKGCAF KYVRIVLHPDTEHSKGCAFAQFMTQEAAQK R I V S K G 0 0 0 1 0 0 1 0 2 1 1 1 0 0 1 1 1 0 0 1 0 0 11 0 1274.6619 A0A024R753;Q9NW13;B4DJ90;H7C5G8 A0A024R753 366 376 RBM28 RNA-binding protein 28 yes no 2;3 1.8556E-12 142.43 4 4 1.0889 1.007 9.9017 8 Median 0.97822 1.0494 10.785 4 0 Median 1.2103 0.96697 9.8101 4 0 Median 151800000 70500000 81305000 128650000 60053000 68599000 23152000 10447000 12706000 6909 214 7074 18337;18338;18339;18340;18341;18342;18343;18344 28702;28703;28704;28705;28706;28707;28708;28709;28710;28711;28712 28707 11 IVLLDSSLEYK DVTHPRMRRYIKNPRIVLLDSSLEYKKGES KNPRIVLLDSSLEYKKGESQTDIEITREED R I V Y K K 0 0 0 1 0 0 1 0 0 1 3 1 0 0 0 2 0 0 1 1 0 0 11 0 1278.7071 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368;Q5SZX6 B4DUR8 193 203 CCT3 T-complex protein 1 subunit gamma yes no 2 0.0012773 68.735 2 2.2094 2.2845 5.627 2 Median 2.2094 2.2845 5.627 2 0 Median NaN NaN NaN 0 0 Median 29975000 11285000 18690000 29975000 11285000 18690000 0 0 0 6910 951 7075 18345;18346 28713;28714 28714 1 IVLPTEK EIVSEAESHVSGISRIVLPTEKTTGARRSK SHVSGISRIVLPTEKTTGARRSKAKSLTDP R I V E K T 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 7 0 798.48511 Q5QJE6;J3KP30;B7Z854 Q5QJE6 153 159 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 0.017426 97.068 2 0.94267 1.0748 4.3922 2 Median 0.94267 1.0748 4.3922 2 0 Median NaN NaN NaN 0 0 Median 314830000 167220000 147610000 314830000 167220000 147610000 0 0 0 6911 1813 7076 18347;18348 28715;28716;28717;28718 28717 4 IVLQIDNAR DLRAQIFANTVDNARIVLQIDNARLAADDF TVDNARIVLQIDNARLAADDFRVKYETELA R I V A R L 1 1 1 1 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1040.5978 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784;B4DE59 F8VZY9 150 158 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.0015989 83.313 2 1.4913 1.2881 1.4637 2 Median NaN NaN NaN 0 0 Median 1.4913 1.2881 1.4637 2 0 Median 75817000 28185000 47632000 0 0 0 75817000 28185000 47632000 + 6912 316;1155;964 7077 18349;18350 28719;28720;28721;28722;28723;28724;28725;28726;28727;28728 28720 10 IVLTNPVCTEVGEK STGGRVSAVKADLGKIVLTNPVCTEVGEKI KIVLTNPVCTEVGEKIALSRRVEKHWRLIG K I V E K I 0 0 1 0 1 0 2 1 0 1 1 1 0 0 1 0 2 0 0 3 0 0 14 0 1557.8072 P41091;Q2VIR3 P41091 427 440 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 6.5956E-05 90.653 2 2 2.1258 2.2631 55.936 4 Linear 1.9772 2.0411 9.4874 2 0 Median 0.98869 0.77844 2.1091 2 0 Median 70423000 27391000 43031000 62848000 23835000 39013000 7574500 3556600 4017900 6913 1559 7078 18351;18352;18353;18354 28729;28730;28731;28732;28733;28734;28735;28736 28732 8 IVPGQFLAVDPK EKIHQETFGKSGCRRIVPGQFLAVDPKGRA CRRIVPGQFLAVDPKGRAVMISAIEEQKLV R I V P K G 1 0 0 1 0 1 0 1 0 1 1 1 0 1 2 0 0 0 0 2 0 0 12 0 1282.7285 A8K6V3;Q15393 A8K6V3 115 126 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.0029977 66.595 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19232000 0 19232000 19232000 0 19232000 0 0 0 6914 764 7079 18355 28737 28737 1 IVPNVLLEQGK LPNDPMFKLVAQLYKIVPNVLLEQGKAKNP QLYKIVPNVLLEQGKAKNPWPNVDAHSGVL K I V G K A 0 0 1 0 0 1 1 1 0 1 2 1 0 0 1 0 0 0 0 2 0 0 11 0 1208.7129 B4DJV2;A0A024RB75;O75390;H0YIC4;Q0QEL2;A0A0C4DGI3;B3KTN4 B4DJV2 370 380 CS Citrate synthase;Citrate synthase, mitochondrial yes no 2 0.010084 49.06 1 1.8231 1.8918 NaN 1 Median 1.8231 1.8918 NaN 1 0 Median NaN NaN NaN 0 0 Median 11340000 5181400 6158700 11340000 5181400 6158700 0 0 0 6915 326 7080 18356 28738 28738 1 IVPVEITISLLK SQYGELIEKYIKEGKIVPVEITISLLKREM EGKIVPVEITISLLKREMDQTMAANAQKNK K I V L K R 0 0 0 0 0 0 1 0 0 3 2 1 0 0 1 1 1 0 0 2 0 0 12 0 1323.8377 Q5T0D2;B4DDL4;B2R6S5;P30085;B4DFW6 Q5T0D2 94 105 CMPK1;CMPK UMP-CMP kinase yes no 2 0.0085972 56.404 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10621000 0 10621000 10621000 0 10621000 0 0 0 6916 844 7081 18357 28739 28739 1 IVQAEGEAEAAK AQFLVEKAKQEQRQKIVQAEGEAEAAKMLG RQKIVQAEGEAEAAKMLGEALSKNPGYIKL K I V A K M 4 0 0 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 12 0 1214.6143 J3KPX7;Q99623;F5GY37 J3KPX7 225 236 PHB2 Prohibitin-2 yes no 2 1.8516E-22 150.61 2 2 2.1282 2.0328 11.128 4 Median 1.6061 1.8667 12.076 2 0 Median 2.6887 2.1336 6.8683 2 0 Median 516030000 184830000 331200000 481930000 175690000 306240000 34095000 9135800 24959000 6917 1328 7082 18358;18359;18360;18361 28740;28741;28742;28743;28744;28745;28746;28747;28748 28741 9 IVQMTEAEVR LITRLLEVRGCRPGKIVQMTEAEVRGLCIK CRPGKIVQMTEAEVRGLCIKSREIFLSQPI K I V V R G 1 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 2 0 0 10 0 1174.6016 V9HW04;P62140;C9J9S3;C9JP48 V9HW04 26 35 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 2 3.6022E-06 107.15 5 1.2949 1.0797 4.5439 4 Median NaN NaN NaN 0 0 Median 1.2949 1.0797 4.5439 4 0 Median 21702000 6756500 14945000 0 0 0 21702000 6756500 14945000 6918 1633 7083;7084 18362;18363;18364;18365;18366 28749;28750;28751;28752;28753 28751 1414 5 IVQVALNGLENILR CIKPLCDLLTVMDSKIVQVALNGLENILRL KIVQVALNGLENILRLGEQEGKRSGSGVNP K I V L R L 1 1 2 0 0 1 1 1 0 2 3 0 0 0 0 0 0 0 0 2 0 0 14 0 1550.9144 B4DII5;B4DWX3;O60684;O15131;Q5BKZ2;P52294;B3KXZ2;B3KWR2 B4DII5 434 447 KPNA6;KPNA5;KPNA1 Importin subunit alpha;Importin subunit alpha-7;Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed no no 2 4.876E-32 155 2 1.0423 1.0297 NaN 1 Median 1.0423 1.0297 NaN 1 0 Median NaN NaN NaN 0 0 Median 19347000 6852700 12494000 19347000 6852700 12494000 0 0 0 6919 980;1600 7085 18367;18368 28754;28755;28756;28757 28755 4 IVSGCPLPEACELYYVNR WLNDLLCLDCLNITRIVSGCPLPEACELYY GCPLPEACELYYVNRDTLFCYHKASEVFLQ R I V N R D 1 1 1 0 2 0 2 1 0 1 2 0 0 0 2 1 0 0 2 2 0 0 18 0 2139.0129 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 495 512 NAT10 N-acetyltransferase 10 no no 2 1.5157E-11 124.86 2 2 1.1656 1.1568 5.7334 4 Median 0.99096 1.114 7.6652 2 0 Median 1.348 1.1702 3.9613 2 0 Median 320790000 149940000 170850000 158210000 81895000 76314000 162580000 68050000 94535000 6920 2023;1687 7086 18369;18370;18371;18372 28758;28759;28760;28761;28762;28763;28764;28765;28766 28766 9 IVSGEAESVEVTPENLQDFVGK LQKQVEKVLRKSAYKIVSGEAESVEVTPEN SVEVTPENLQDFVGKPVFTVERMYDVTPPG K I V G K P 1 0 1 1 0 1 4 2 0 1 1 1 0 1 1 2 1 0 0 4 0 0 22 0 2346.1591 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ERR6 K7EJE8 597 618 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 1.1867E-06 64.798 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15212000 0 15212000 15212000 0 15212000 0 0 0 6921 946 7087 18373 28767 28767 1 IVSGEAESVEVTPENLQDFVGKPVFTVER LQKQVEKVLRKSAYKIVSGEAESVEVTPEN NLQDFVGKPVFTVERMYDVTPPGVVMGLAW K I V E R M 1 1 1 1 0 1 5 2 0 1 1 1 0 2 2 2 2 0 0 6 0 0 29 1 3174.6085 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ERR6 K7EJE8 597 625 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 3 0.014999 29.346 1 1 1.9682 1.6538 NaN 1 Median NaN NaN NaN 0 0 Median 1.9682 1.6538 NaN 1 0 Median 21432000 2409600 19022000 14354000 0 14354000 7077800 2409600 4668300 6922 946 7088 18374;18375 28768;28769 28768 2 IVSLFAEHNDLQYAAPGGLIGVGTK KDSEGKLMCKPIFSKIVSLFAEHNDLQYAA LQYAAPGGLIGVGTKIDPTLCRADRMVGQV K I V T K I 3 0 1 1 0 1 1 4 1 2 3 1 0 1 1 1 1 0 1 2 0 0 25 0 2569.354 P41091;Q2VIR3;F8W810 P41091 318 342 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 4.1175E-12 63.115 2 1 1.8011 1.9282 46.706 3 Plateau 1.7714 1.874 4.0293 2 0 Median 1.0515 0.83577 NaN 1 0 Median 77079000 29420000 47659000 67054000 24555000 42499000 10025000 4865100 5160000 6923 1559 7089 18376;18377;18378 28770;28771;28772;28773;28774 28773 5 IVSSSDVGHDEYSTQSLVK ADADDIDAWMLDILKIVSSSDVGHDEYSTQ SDVGHDEYSTQSLVKKHKDVAEEIANYRPT K I V V K K 0 0 0 2 0 1 1 1 1 1 1 1 0 0 0 5 1 0 1 3 0 0 19 0 2049.9855 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 680 698 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 1.8212E-05 49.188 2 2 2.4244 2.1614 49.969 4 Median 1.3335 1.3869 23.033 2 0 Median 4.0285 3.1574 13.878 2 0 Median 45832000 17272000 28560000 38174000 15509000 22665000 7658400 1763500 5894800 6924 415 7090 18379;18380;18381;18382 28775;28776;28777;28778 28775 4 IVTVSTGIK VYDADMDLTASEVSKIVTVSTGIKKKSNKK ASEVSKIVTVSTGIKKKSNKKTNEHGMKTF K I V I K K 0 0 0 0 0 0 0 1 0 2 0 1 0 0 0 1 2 0 0 2 0 0 9 0 916.55933 Q562F6;B7Z7S9 Q562F6 375 383 SGOL2 Shugoshin-like 2 yes no 2 0.023107 48.794 1 1.6773 1.8459 NaN 1 Median 1.6773 1.8459 NaN 1 0 Median NaN NaN NaN 0 0 Median 42703000 16235000 26468000 42703000 16235000 26468000 0 0 0 6925 1795 7091 18383 28779 28779 1 IVVEFLQSNSDSTYEDLINK APIFGLMQEKIYISKIVVEFLQSNSDSTYE LQSNSDSTYEDLINKIETTVPPSGLNLNRF K I V N K I 0 0 2 2 0 1 2 0 0 2 2 1 0 1 0 3 1 0 1 2 0 0 20 0 2313.1376 A0A024R7E3;P26358;Q59FP7;I6L9H2;K7EP77 A0A024R7E3 573 592 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 8.7426E-07 79.466 2 2 0.75044 0.67661 8.1655 4 Median 0.64317 0.64762 0.75595 2 0 Median 0.90466 0.73499 6.2698 2 0 Median 36481000 20318000 16163000 18859000 10721000 8137200 17622000 9596200 8025800 6926 222 7092 18384;18385;18386;18387 28780;28781;28782;28783;28784;28785;28786;28787 28783 7 IVVFQYSDGK TAMVYPEEAEPKQGRIVVFQYSDGKLQTVA PKQGRIVVFQYSDGKLQTVAEKEVKGAVYS R I V G K L 0 0 0 1 0 1 0 1 0 1 0 1 0 1 0 1 0 0 1 2 0 0 10 0 1154.5972 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 848 857 DDB1 DNA damage-binding protein 1 yes no 2 1.0508E-11 138.1 2 2 0.94271 0.90685 9.5787 4 Median 0.72588 0.8339 1.2366 2 0 Median 1.2131 0.98371 0.88107 2 0 Median 427500000 241310000 186190000 376030000 218410000 157620000 51470000 22896000 28573000 6927 1770 7093 18388;18389;18390;18391 28788;28789;28790;28791;28792;28793 28789 6 IVVLFYK EYCYDNIHFMKAFQKIVVLFYKADVLSEEA HFMKAFQKIVVLFYKADVLSEEAILKWYKE K I V Y K A 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 2 0 0 7 0 880.54223 B5MCE7;B5MCH7;B7Z4K8;E7ETZ4;B3KM68;A0A024RA42;Q9Y6E2;E9PFD4;D3DN77;A0A024R3Z6;Q53FN7;Q7L1Q6 B5MCE7 169 175 BZW2;hCG_2022736;BZW1 Basic leucine zipper and W2 domain-containing protein 2;Basic leucine zipper and W2 domain-containing protein 1 yes no 2 0.031635 72.021 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5347600 0 5347600 5347600 0 5347600 0 0 0 6928 293 7094 18392;18393 28794;28795 28794 2 IVVNLTGR YIGEFEIIDDHRAGKIVVNLTGRLNKCGVI DDHRAGKIVVNLTGRLNKCGVISPRFDVQL K I V G R L 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 8 0 870.5287 B2R4W8;P62244;I3L3P7;I3L246;H3BN98 B2R4W8 61 68 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 0.0011443 111.73 2 2 0.88824 0.90988 1.2741 4 Linear 0.7695 0.90653 1.0571 2 0 Median 1.026 0.89086 0.84452 2 0 Median 1559200000 840740000 718410000 1366100000 748620000 617520000 193010000 92122000 100890000 6929 831 7095 18394;18395;18396;18397 28796;28797;28798;28799;28800;28801;28802;28803;28804 28798 9 IVYLYTK TASNKTRLSRTPGNRIVYLYTKKVGKAPKS LSRTPGNRIVYLYTKKVGKAPKSACGVCPG R I V T K K 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 2 1 0 0 7 0 898.51641 A0A024RDH8;P49207 A0A024RDH8 30 36 RPL34 60S ribosomal protein L34 yes no 1;2 0.030163 70.912 2 2 0.90589 0.9223 14.355 4 Median 0.85605 1.0171 1.3651 2 0 Median 0.98018 0.80217 7.2576 2 0 Median 1847700000 1005700000 841990000 1788300000 976540000 811760000 59360000 29132000 30228000 6930 386 7096 18398;18399;18400;18401 28805;28806;28807;28808;28809;28810 28805 6 IVYPPQLPGEPR SASLDISRKWEKKNKIVYPPQLPGEPRRPA KNKIVYPPQLPGEPRRPAEIYHCRRQIKYS K I V P R R 0 1 0 0 0 1 1 1 0 1 1 0 0 0 4 0 0 0 1 1 0 0 12 0 1364.7452 E7ESL0;J3KQY1;Q9NWU5 E7ESL0 57 68 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 0.0043643 53.683 3 0.95349 0.98743 NaN 1 Median 0.95349 0.98743 NaN 1 0 Median NaN NaN NaN 0 0 Median 25269000 13946000 11323000 25269000 13946000 11323000 0 0 0 6931 1222 7097 18402;18403;18404 28811;28812;28813;28814;28815 28811 5 IWATDDGR TGRRIFTGSDDCLVKIWATDDGRLLATLRG SDDCLVKIWATDDGRLLATLRGHAAEISDM K I W G R L 1 1 0 2 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 8 0 932.43519 Q8WWQ0;Q6RI45 Q8WWQ0 209 216 PHIP;BRWD3 PH-interacting protein;Bromodomain and WD repeat-containing protein 3 no no 2 0.010197 72.789 2 0.70275 0.74567 1.3292 2 Median 0.70275 0.74567 1.3292 2 0 Median NaN NaN NaN 0 0 Median 72043000 41105000 30938000 72043000 41105000 30938000 0 0 0 6932 1942;1860 7098 18405;18406 28816;28817 28817 2 IWCFGPDGTGPNILTDITK YLAEKYEWDVAEARKIWCFGPDGTGPNILT GPDGTGPNILTDITKGVQYLNEIKDSVVAG K I W T K G 0 0 1 2 1 0 0 3 0 3 1 1 0 1 2 0 3 1 0 0 0 0 19 0 2104.0299 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 649 667 EEF2 Elongation factor 2 yes no 2 4.9092E-08 90.412 2 2.8187 3.0896 0.5579 2 Median 2.8187 3.0896 0.5579 2 0 Median NaN NaN NaN 0 0 Median 91593000 24762000 66831000 91593000 24762000 66831000 0 0 0 6933 1478 7099 18407;18408 28818;28819;28820;28821;28822 28818 5 IWDLEGK PNRYWLCAATGPSIKIWDLEGKIIVDELKQ AATGPSIKIWDLEGKIIVDELKQEVISTSS K I W G K I 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 1 0 0 0 0 7 0 859.44397 E9KL35;P63244;J3KPE3;D6RAC2;H0Y8W2;H0YAF8;H0YAM7;D6REE5;D6RF23;H0Y9P0 E9KL35 258 264 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.030704 68.312 1 1.6652 1.8783 NaN 1 Median 1.6652 1.8783 NaN 1 0 Median NaN NaN NaN 0 0 Median 62866000 23962000 38903000 62866000 23962000 38903000 0 0 0 6934 1227 7100 18409 28823 28823 1 IWDLQGSEEPVFR HPHVVATGGKENALKIWDLQGSEEPVFRAK LKIWDLQGSEEPVFRAKNVRNDWLDLRVPI K I W F R A 0 1 0 1 0 1 2 1 0 1 1 0 0 1 1 1 0 1 0 1 0 0 13 0 1574.7729 Q6RFH5;E9PS41;B4E018 Q6RFH5 157 169 WDR74 WD repeat-containing protein 74 yes no 2 2.5981E-06 109.42 1 2 1.3033 1.0731 10.522 3 Median 0.86674 0.89654 NaN 1 0 Median 1.3179 1.0757 0.3414 2 0 Median 46814000 23014000 23801000 23384000 12733000 10652000 23430000 10281000 13149000 6935 1859 7101 18410;18411;18412 28824;28825;28826;28827;28828;28829;28830 28827 7 IWDTASGQCLK DGSLIVSSSYDGLCRIWDTASGQCLKTLID GLCRIWDTASGQCLKTLIDDDNPPVSFVKF R I W L K T 1 0 0 1 1 1 0 1 0 1 1 1 0 0 0 1 1 1 0 0 0 0 11 0 1277.6074 P61964 P61964 197 207 WDR5 WD repeat-containing protein 5 yes yes 2 2.379E-05 102.61 2 2 1.131 0.99627 46.624 2 Median 0.71702 0.71647 NaN 1 0 Median 1.7839 1.3853 NaN 1 0 Median 25456000 9932800 15523000 22013000 8954800 13059000 3442300 978010 2464200 6936 1630 7102 18413;18414;18415;18416 28831;28832;28833;28834;28835;28836 28831 6 IWGLDFGDCHK DGALIATGSADRNVKIWGLDFGDCHKSLFA RNVKIWGLDFGDCHKSLFAHDDSVMYLQFV K I W H K S 0 0 0 2 1 0 0 2 1 1 1 1 0 1 0 0 0 1 0 0 0 0 11 0 1346.6078 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 617 627 WDR3 WD repeat-containing protein 3 yes no 3 0.0049517 38.634 2 1 0.80973 0.80825 9.7417 3 Median 0.75103 0.76194 8.3436 2 0 Median 1.1214 0.87143 NaN 1 0 Median 35736000 22123000 13613000 32316000 20452000 11864000 3419800 1670700 1749100 6937 1827 7103 18417;18418;18419 28837;28838;28839;28840;28841;28842 28840 6 IWIFDGPTGEGR REPLLVTNGADNALRIWIFDGPTGEGRLLR ALRIWIFDGPTGEGRLLRFRMGHSAPLTNI R I W G R L 0 1 0 1 0 0 1 3 0 2 0 0 0 1 1 0 1 1 0 0 0 0 12 0 1346.6619 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 303 314 WDR36 WD repeat-containing protein 36 yes no 2 0.00021273 87.258 2 2 0.98613 0.96572 8.9992 4 Median 0.79081 0.88559 7.198 2 0 Median 1.2347 1.0154 2.0375 2 0 Median 142330000 69307000 73020000 111170000 55833000 55337000 31156000 13473000 17683000 6938 486 7104 18420;18421;18422;18423 28843;28844;28845;28846;28847;28848;28849;28850 28843 8 IWLVPIDFDK EDSFEGERPGRRSKKIWLVPIDFDKLEIPQ RRSKKIWLVPIDFDKLEIPQPDFEVPGADC K I W D K L 0 0 0 2 0 0 0 0 0 2 1 1 0 1 1 0 0 1 0 1 0 0 10 0 1244.6805 Q5T5X7 Q5T5X7 529 538 BEND3 BEN domain-containing protein 3 yes yes 2 0.0022483 69.954 2 0.41054 0.4541 NaN 1 Median 0.41054 0.4541 NaN 1 0 Median NaN NaN NaN 0 0 Median 3379000 2716500 662520 3379000 2716500 662520 0 0 0 6939 1822 7105 18424;18425 28851;28852;28853 28852 3 IWNLTQR KLATVLSGACDGEVRIWNLTQRNCIRTIQA GACDGEVRIWNLTQRNCIRTIQAHEGFVRG R I W Q R N 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 7 0 929.5083 A0A087WT20;Q9NV06;B3KME9 A0A087WT20 245 251 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.026871 81.32 1 1 1.1313 1.0566 15.484 2 Median 0.9267 0.94705 NaN 1 0 Median 1.3811 1.1789 NaN 1 0 Median 36998000 20069000 16929000 31317000 17704000 13613000 5680600 2365100 3315500 6940 402 7106 18426;18427 28854;28855;28856 28854 3 IWNNEDVNLDK QTGEYVVVHDNKVLRIWNNEDVNLDKVFKA KVLRIWNNEDVNLDKVFKATLSAEVYRILS R I W D K V 0 0 3 2 0 0 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 11 0 1358.6466 Q9H8H0;J3QLQ6 Q9H8H0 89 99 NOL11 Nucleolar protein 11 yes no 2 4.0226E-05 100.48 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48559000 48559000 0 48559000 48559000 0 0 0 0 6941 2042 7107 18428;18429 28857;28858 28858 2 IWSTVPTDEEDEMEESTNRPR SGTKFCSGSWDKMLKIWSTVPTDEEDEMEE TDEEDEMEESTNRPRKKQKTEQLGLTRTPI K I W P R K 0 2 1 2 0 0 5 0 0 1 0 0 1 0 2 2 3 1 0 1 0 0 21 1 2520.1075 Q53T99;Q9GZL7;B4DRY7 Q53T99 215 235 WDR12 Ribosome biogenesis protein WDR12 yes no 3 0.0016953 29.636 2 1.3186 1.1636 6.1672 2 Median NaN NaN NaN 0 0 Median 1.3186 1.1636 6.1672 2 0 Median 9601200 4342600 5258600 0 0 0 9601200 4342600 5258600 6942 1792 7108 18430;18431 28859;28860;28861;28862 28860 4 IWSVPNASCVQVVR SQDLVFSASPDATIRIWSVPNASCVQVVRA RIWSVPNASCVQVVRAHESAVTGLSLHATG R I W V R A 1 1 1 0 1 1 0 0 0 1 0 0 0 0 1 2 0 1 0 4 0 0 14 0 1613.8348 Q9UMS4 Q9UMS4 290 303 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 0.0073196 40.589 2 1 0.97378 0.95835 9.665 3 Median 0.89735 0.91523 13.141 2 0 Median 1.0844 0.95835 NaN 1 0 Median 37338000 17477000 19861000 33633000 15605000 18028000 3704500 1871200 1833300 6943 2114 7109 18432;18433;18434 28863;28864;28865;28866 28863 4 IYADTFGDINYQEFAK SSQYSICFTLGSFAKIYADTFGDINYQEFA YADTFGDINYQEFAKRLWGDIYFNPKTRKF K I Y A K R 2 0 1 2 0 1 1 1 0 2 0 1 0 2 0 0 1 0 2 0 0 0 16 0 1893.8785 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 277 292 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 6.8215E-13 123.95 2 1 0.96193 1.0236 15.889 3 Median 0.95108 1.0401 2.2538 2 0 Median 0.96193 0.79094 NaN 1 0 Median 101300000 50060000 51244000 91351000 45245000 46106000 9952600 4814700 5137900 6944 794 7110 18435;18436;18437 28867;28868;28869;28870;28871;28872 28871 6 IYAGVGEFSFEEIR ASEEKKEKMMYCKEKIYAGVGEFSFEEIRA KIYAGVGEFSFEEIRAEVFRKKLKEQREAE K I Y I R A 1 1 0 0 0 0 3 2 0 2 0 0 0 2 0 1 0 0 1 1 0 0 14 0 1615.7882 O60566 O60566 403 416 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.014936 48.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 879960 879960 0 0 0 0 879960 879960 0 6945 1396 7111 18438 28873 28873 1 IYAPEAPYTSPDK DVRLLVACCLADIFRIYAPEAPYTSPDKLK FRIYAPEAPYTSPDKLKDIFMFITRQLKGL R I Y D K L 2 0 0 1 0 0 1 0 0 1 0 1 0 0 3 1 1 0 2 0 0 0 13 0 1450.698 Q9NTI5;B7Z5S1 Q9NTI5 90 102 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2 0.010153 42.001 2 0.54764 0.43697 NaN 1 Median NaN NaN NaN 0 0 Median 0.54764 0.43697 NaN 1 0 Median 4346900 3335200 1011700 0 0 0 4346900 3335200 1011700 6946 2069 7112 18439;18440 28874;28875 28875 2 IYDLNKPEAEPK DSNYLLTGGQDKLLRIYDLNKPEAEPKEIS LLRIYDLNKPEAEPKEISGHTSGIKKALWC R I Y P K E 1 0 1 1 0 0 2 0 0 1 1 2 0 0 2 0 0 0 1 0 0 0 12 1 1415.7296 Q9Y3F4;B0AZV0 Q9Y3F4 126 137 STRAP Serine-threonine kinase receptor-associated protein yes no 2;3 5.1916E-27 143.96 3 1 3.3269 2.9006 NaN 1 Median NaN NaN NaN 0 0 Median 3.3269 2.9006 NaN 1 0 Median 78361000 754270 77607000 75190000 0 75190000 3171600 754270 2417300 6947 2136 7113 18441;18442;18443;18444 28876;28877;28878;28879;28880 28879 5 IYEISNR RAPVSQAAKFDPSTKIYEISNRWKLAQVQV AKFDPSTKIYEISNRWKLAQVQVQKDSKEA K I Y N R W 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 0 7 0 893.46068 Q01780 Q01780 717 723 EXOSC10 Exosome component 10 yes yes 2 0.044039 57.811 1 1.0631 0.8882 NaN 1 Median NaN NaN NaN 0 0 Median 1.0631 0.8882 NaN 1 0 Median 3359100 1467400 1891700 0 0 0 3359100 1467400 1891700 6948 1676 7114 18445 28881 28881 1 IYEYVESR EACDMALELNASKHRIYEYVESRMSFIAPN LNASKHRIYEYVESRMSFIAPNLSIIIGAS R I Y S R M 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 2 1 0 0 8 0 1057.508 B4DWW8;E7EVX8;Q8WWY3;E7EU94;E7ESX0;E7EN72 B4DWW8 204 211 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 0.013465 65.252 1 1.1306 1.1544 NaN 1 Median 1.1306 1.1544 NaN 1 0 Median NaN NaN NaN 0 0 Median 18822000 6471200 12351000 18822000 6471200 12351000 0 0 0 6949 1046 7115 18446 28882 28882 1 IYGETPEACR GVTAIELGEETCTFRIYGETPEACRQARSY TCTFRIYGETPEACRQARSYLEFSEDSVQV R I Y C R Q 1 1 0 0 1 0 2 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 10 0 1194.5339 P51116 P51116 274 283 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 1.5655E-05 100.98 2 2 1.4873 1.3804 14.962 4 Median 1.4873 1.5532 11.679 2 0 Median 1.4981 1.2533 8.66 2 0 Median 54790000 23293000 31497000 45082000 18975000 26107000 9708500 4318600 5390000 6950 1593 7116 18447;18448;18449;18450 28883;28884;28885;28886;28887;28888;28889;28890 28885 8 IYGFYDECK FFLLRGNHECASINRIYGFYDECKRRYNIK CASINRIYGFYDECKRRYNIKLWKTFTDCF R I Y C K R 0 0 0 1 1 0 1 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 9 0 1193.5063 P62136;A0A140VJS9;B3KXM2;H0Y3Y6;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;B4E163 P62136 133 141 PPP1CA;PPP1CB;PPP1CC;HEL-S-80p Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 0.0016226 83.005 2 2 1.6833 1.5969 18.14 4 Median 1.2136 1.3665 0.38164 2 0 Median 2.3213 1.8708 0.74265 2 0 Median 266160000 115520000 150640000 221730000 101980000 119750000 44431000 13538000 30893000 6951 1632;343;1633 7117 18451;18452;18453;18454 28891;28892;28893;28894;28895;28896;28897;28898;28899;28900 28891 10 IYGISFPDPK STYWEGKADMETLQRIYGISFPDPKMLKEW ETLQRIYGISFPDPKMLKEWEKFQEEAKNR R I Y P K M 0 0 0 1 0 0 0 1 0 2 0 1 0 1 2 1 0 0 1 0 0 0 10 0 1135.5914 Q5M7Z9;B2RDX5;Q53GX7;P26639;B4DKZ9;B3KTN2 Q5M7Z9 297 306 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.0010607 76.827 1 2 1.3696 1.1967 51.736 3 Median 2.6401 2.7477 NaN 1 0 Median 1.3168 1.1281 8.3524 2 0 Median 21945000 6739900 15205000 19021000 5474200 13547000 2924200 1265700 1658400 6952 892 7118 18455;18456;18457 28901;28902;28903;28904 28902 4 IYGLGSLALYEK AAKYARAERELKPARIYGLGSLALYEKADI PARIYGLGSLALYEKADIKGPEDKKKHLLI R I Y E K A 1 0 0 0 0 0 1 2 0 1 3 1 0 0 0 1 0 0 2 0 0 0 12 0 1325.7231 B4DFE6;B4DL14;Q8TAS0;P36542 B4DFE6 68 79 ATP5C1 ATP synthase subunit gamma;ATP synthase subunit gamma, mitochondrial yes no 2 0.0010242 62.303 1 1.2793 1.2956 NaN 1 Median 1.2793 1.2956 NaN 1 0 Median NaN NaN NaN 0 0 Median 6725900 3551000 3174900 6725900 3551000 3174900 0 0 0 6953 969 7119 18458 28905 28905 1 IYHTIAYLTPLPQPNR PSTAILHFRLFVGARIYHTIAYLTPLPQPN YHTIAYLTPLPQPNRALSFFVGYGVTLSMA R I Y N R A 1 1 1 0 0 1 0 0 1 2 2 0 0 0 3 0 2 0 2 0 0 0 16 0 1896.0258 Q6LET6;A0A024RAX2;P10620;F5H760 Q6LET6 115 130 MGST1 Microsomal glutathione S-transferase 1 yes no 3 0.010036 38.376 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3639400 3639400 0 3639400 3639400 0 0 0 0 6954 315 7120 18459 28906 28906 1 IYLILEYAPR PNILRLYNYFYDRRRIYLILEYAPRGELYK YDRRRIYLILEYAPRGELYKELQKSCTFDE R I Y P R G 1 1 0 0 0 0 1 0 0 2 2 0 0 0 1 0 0 0 2 0 0 0 10 0 1249.7071 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 Q96GD4 150 159 AURKB Aurora kinase B no no 2 7.0205E-06 107.47 3 2 1.424 1.407 22.963 4 Median 1.0236 1.1448 3.0005 2 0 Median 1.9947 1.7019 0.7341 2 0 Median 184610000 83788000 100820000 134370000 65895000 68479000 50234000 17894000 32340000 6955 881;1967 7121 18460;18461;18462;18463;18464 28907;28908;28909;28910;28911;28912;28913;28914;28915;28916;28917 28910 11 IYLPPEASSQR ______________________________ KHSRIYLPPEASSQRRNLPMDAIFFDSIPS R I Y Q R R 1 1 0 0 0 1 1 0 0 1 1 0 0 0 2 2 0 0 1 0 0 0 11 0 1259.651 Q6P0N0;G5E9K5;C9J2Q8 Q6P0N0 11 21 MIS18BP1 Mis18-binding protein 1 yes no 2 0.035505 36.693 2 1.683 1.4813 1.0243 2 Median NaN NaN NaN 0 0 Median 1.683 1.4813 1.0243 2 0 Median 4416300 1636700 2779600 0 0 0 4416300 1636700 2779600 6956 1849 7122 18465;18466 28918;28919 28919 2 IYLTADNLVLNLQDESFTR AAQNISKTIATSQNRIYLTADNLVLNLQDE ADNLVLNLQDESFTRSDSLIKGKK______ R I Y T R S 1 1 2 2 0 1 1 0 0 1 4 0 0 1 0 1 2 0 1 1 0 0 19 0 2224.1376 J3KPX7;Q99623;Q9BXV3 J3KPX7 271 289 PHB2 Prohibitin-2 yes no 2 2.1729E-159 256.57 3 2 1.4729 1.6912 26.658 4 Median 1.4808 1.6978 24.086 3 0 Plateau 2.4479 2.1093 NaN 1 0 Median 437670000 151490000 286180000 328530000 130850000 197690000 109140000 20640000 88495000 6957 1328 7123 18467;18468;18469;18470;18471 28920;28921;28922;28923;28924;28925;28926;28927;28928;28929 28927 9 IYNISGNGSPLADSK VFKTPGLRTPAAGERIYNISGNGSPLADSK IYNISGNGSPLADSKEIFLTVPVGGGESLR R I Y S K E 1 0 2 1 0 0 0 2 0 2 1 1 0 0 1 3 0 0 1 0 0 0 15 0 1534.7627 Q53HL2 Q53HL2 211 225 CDCA8 Borealin yes yes 2 0.0013518 72.705 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6958 1789 7124 18472 28930 28930 1 IYNSIYIGSQDALIAHYPR GLFHPARKVRDVYWKIYNSIYIGSQDALIA IYIGSQDALIAHYPRIYNDDKNTYIRYELD K I Y P R I 2 1 1 1 0 1 0 1 1 4 1 0 0 0 1 2 0 0 3 0 0 0 19 0 2193.1219 O75533;Q9NTB4 O75533 1268 1286 SF3B1;DKFZp434M052 Splicing factor 3B subunit 1 yes no 3 0.039225 14.928 1 0.47663 0.4077 NaN 1 Median NaN NaN NaN 0 0 Median 0.47663 0.4077 NaN 1 0 Median 2757000 1801600 955420 0 0 0 2757000 1801600 955420 6959 1408 7125 18473 28931 28931 1 IYPDPELEVQVLGLPIR VFKCPEDQLPLDYAKIYPDPELEVQVLGLP PDPELEVQVLGLPIRCIHSEEGCRWSGPLR K I Y I R C 0 1 0 1 0 1 2 1 0 2 3 0 0 0 3 0 0 0 1 2 0 0 17 0 1950.0826 A0A024QZ59;Q9BUZ4;A0A0C4DFM9;B4DUU9;F6SA91;J9JIG0 A0A024QZ59 66 82 TRAF4 TNF receptor-associated factor 4 yes no 2 5.5299E-05 76.655 2 0.987 1.0007 NaN 1 Median 0.987 1.0007 NaN 1 0 Median NaN NaN NaN 0 0 Median 5430900 2060800 3370100 5430900 2060800 3370100 0 0 0 6960 11 7126 18474;18475 28932;28933;28934;28935 28933 4 IYPSEFGK FNSFKPKGGVIFSVKIYPSEFGKERMKEEQ GVIFSVKIYPSEFGKERMKEEQVQGPVELL K I Y G K E 0 0 0 0 0 0 1 1 0 1 0 1 0 1 1 1 0 0 1 0 0 0 8 0 939.47018 Q9H501;A0JLU5;Q05C10;A0A087WX71 Q9H501 384 391 ESF1 ESF1 homolog yes no 2 0.051567 49.325 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15542000 15542000 0 15542000 15542000 0 0 0 0 6961 2033 7127 18476 28936 28936 1 IYPTFLHLHGK RELQCLTPRGRYDIRIYPTFLHLHGKTFDY YDIRIYPTFLHLHGKTFDYKIPYTTVLRLF R I Y G K T 0 0 0 0 0 0 0 1 2 1 2 1 0 1 1 0 1 0 1 0 0 0 11 0 1324.7292 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 218 228 SSRP1 FACT complex subunit SSRP1 yes no 2;3 0.0064337 54.416 1 3 0.95876 0.79637 5.9156 4 Median 0.7283 0.77479 NaN 1 0 Median 0.99767 0.81856 7.0084 3 0 Median 73788000 36202000 37586000 23307000 10377000 12930000 50481000 25825000 24656000 6962 167 7128 18477;18478;18479;18480 28937;28938;28939;28940;28941;28942;28943 28942 7 IYQDAYR RIAQRWRELPDSKKKIYQDAYRAEWQVYKE ELPDSKKKIYQDAYRAEWQVYKEEISRFKE K I Y Y R A 1 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 7 0 927.44503 H7BYN3;Q6LES8;E5KSX8;E5KSU5;Q00059 H7BYN3 80 86 TFAM Transcription factor A, mitochondrial yes no 2 0.019065 99.384 1 1 1.5133 1.2952 NaN 1 Median NaN NaN NaN 0 0 Median 1.5133 1.2952 NaN 1 0 Median 5971900 2266800 3705100 0 0 0 5971900 2266800 3705100 6963 1209 7129 18481;18482 28944;28945;28946 28944 3 IYQIYEGTSQIQR FNTEYPVEKLMRDAKIYQIYEGTSQIQRLI AKIYQIYEGTSQIQRLIVAREHIDKYKN__ K I Y Q R L 0 1 0 0 0 3 1 1 0 3 0 0 0 0 0 1 1 0 2 0 0 0 13 0 1597.81 B7Z9I1;B4DWX6;A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B4DVB1;B4DJE7 B7Z9I1 360 372 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 9.7744E-24 157.78 2 2 1.2356 1.1368 51.062 4 Median 1.6935 1.7607 72.36 2 0 Median 1.2356 1.0887 16.584 2 0 Median 59753000 30489000 29264000 54937000 28135000 26802000 4816200 2353700 2462500 6964 545 7130 18483;18484;18485;18486 28947;28948;28949;28950;28951;28952;28953;28954 28948 8 IYQLLAK EQIANTETTEDVKGRIYQLLAKASYKKAII TTEDVKGRIYQLLAKASYKKAIILTREATG R I Y A K A 1 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 7 0 847.51674 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 520 526 NCAPD2 Condensin complex subunit 1 yes no 2 0.013378 102.98 2 0.82956 0.93934 5.5087 2 Median 0.82956 0.93934 5.5087 2 0 Median NaN NaN NaN 0 0 Median 267300000 144320000 122980000 267300000 144320000 122980000 0 0 0 6965 908 7131 18487;18488 28955;28956;28957;28958 28956 4 IYQNGESFQPNCK CRAQSEGRPCEYNSRIYQNGESFQPNCKHQ SRIYQNGESFQPNCKHQCTCIDGAVGCIPL R I Y C K H 0 0 2 0 1 2 1 1 0 1 0 1 0 1 1 1 0 0 1 0 0 0 13 0 1583.7038 B4DI61;Q6FI18;O00622;Q9UID7 B4DI61 82 94 CYR61 Protein CYR61 yes no 2 6.1843E-19 145.25 2 1 1.8697 1.9741 33.706 3 Median 2.0457 2.1282 10.631 2 0 Median 1.5458 1.2047 NaN 1 0 Median 40319000 16612000 23706000 36714000 15231000 21483000 3605000 1381800 2223100 6966 979 7132 18489;18490;18491 28959;28960;28961 28960 3 IYQNIQDGSLDLNAAESGVQHK TGENVEDAFLEAAKKIYQNIQDGSLDLNAA GSLDLNAAESGVQHKPSAPQGGRLTSEPQP K I Y H K P 2 0 2 2 0 3 1 2 1 2 2 1 0 0 0 2 0 0 1 1 0 0 22 0 2399.1717 A0A024R845;P61106 A0A024R845 172 193 RAB14 Ras-related protein Rab-14 yes no 3 1.2159E-16 109.85 2 1.4275 1.4561 4.6652 2 Median 1.4275 1.4561 4.6652 2 0 Median NaN NaN NaN 0 0 Median 47318000 20316000 27002000 47318000 20316000 27002000 0 0 0 6967 242 7133 18492;18493 28962;28963;28964 28964 3 IYQVLDFR WIRFGYDPRKNPDAKIYQVLDFRIRCGMKH RKNPDAKIYQVLDFRIRCGMKHGYAPSDLP K I Y F R I 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1052.5655 Q9Y5Q8;Q5T7U1;Q5T7U0;B7Z1V3;H7BY84;Q9NXK9 Q9Y5Q8 315 322 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.001222 111.01 1 1.148 1.1605 NaN 1 Median 1.148 1.1605 NaN 1 0 Median NaN NaN NaN 0 0 Median 17837000 6323800 11514000 17837000 6323800 11514000 0 0 0 6968 2149 7134 18494 28965;28966 28966 2 IYSHSLLPVLR CGDQTLGDLLLTPTRIYSHSLLPVLRSGHV TPTRIYSHSLLPVLRSGHVKAFAHITGGGL R I Y L R S 0 1 0 0 0 0 0 0 1 1 3 0 0 0 1 2 0 0 1 1 0 0 11 0 1296.7554 Q3B7A7;Q59HH3;P22102;B4DJ93 Q3B7A7 661 671 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 1.4371E-05 82.417 2 2.6733 2.7192 6.1472 2 Median 2.6733 2.7192 6.1472 2 0 Median NaN NaN NaN 0 0 Median 38986000 10260000 28725000 38986000 10260000 28725000 0 0 0 6969 1507 7135 18495;18496 28967;28968;28969 28969 3 IYSINPK RQGHEAYVEMARKNKIYSINPKKQPWHKME VEMARKNKIYSINPKKQPWHKMELREQELM K I Y P K K 0 0 1 0 0 0 0 0 0 2 0 1 0 0 1 1 0 0 1 0 0 0 7 0 833.4647 Q8WWQ0 Q8WWQ0 983 989 PHIP PH-interacting protein yes yes 2 0.026656 81.381 2 0.80746 0.91959 35.843 2 Median 0.80746 0.91959 35.843 2 0 Median NaN NaN NaN 0 0 Median 254250000 145840000 108410000 254250000 145840000 108410000 0 0 0 6970 1942 7136 18497;18498 28970;28971;28972 28970 3 IYSLSCGK ______________________________ SSLNEVKIYSLSCGKSLPEWLSDRKKRALQ K I Y G K S 0 0 0 0 1 0 0 1 0 1 1 1 0 0 0 2 0 0 1 0 0 0 8 0 926.45315 Q9BSC4 Q9BSC4 11 18 NOL10 Nucleolar protein 10 yes yes 2 0.027047 54.157 2 1 1.2992 1.1749 7.166 2 Median 1.0811 1.1168 NaN 1 0 Median 1.5614 1.2359 NaN 1 0 Median 26697000 16800000 9896800 21706000 14910000 6796000 4990700 1889900 3100800 6971 2000 7137 18499;18500;18501 28973;28974;28975 28973 3 IYVDDGLISLQVK LDYKNICKVVEVGSKIYVDDGLISLQVKQK SKIYVDDGLISLQVKQKGADFLVTEVENGG K I Y V K Q 0 0 0 2 0 1 0 1 0 2 2 1 0 0 0 1 0 0 1 2 0 0 13 0 1461.8079 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34 V9HWB8 174 186 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 1.4574E-23 161.67 2 3 2.3306 2.8613 45.084 3 Plateau 2.3306 2.6093 29.352 2 0 Median 1.6687 1.3046 NaN 1 0 Median 175350000 42957000 132390000 159080000 38972000 120110000 16266000 3985800 12281000 6972 1481 7138 18502;18503;18504;18505;18506 28976;28977;28978;28979;28980;28981;28982 28977 7 IYVEIER KLRLIDTLRMVTEGKIYVEIERARLTKTLA LRMVTEGKIYVEIERARLTKTLATIKEQNG K I Y E R A 0 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 7 0 920.49673 A0A0S2Z489;O00232;A0A0S2Z476 A0A0S2Z489 136 142 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 0.032902 64.803 2 1.8282 1.8497 10.82 2 Median 1.8282 1.8497 10.82 2 0 Median NaN NaN NaN 0 0 Median 36216000 11284000 24931000 36216000 11284000 24931000 0 0 0 6973 558 7139 18507;18508 28983;28984 28984 2 IYVGNLPPDIR GGGVIRGPAGNNDCRIYVGNLPPDIRTKDI NDCRIYVGNLPPDIRTKDIEDVFYKYGAIR R I Y I R T 0 1 1 1 0 0 0 1 0 2 1 0 0 0 2 0 0 0 1 1 0 0 11 0 1255.6925 J3KTL2;Q07955;Q59FA2;A8K1L8;J3QQV5;J3KSW7 J3KTL2 18 28 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 3.6873E-18 162.88 3 2 0.96906 0.96198 45.822 4 Median 1.2228 1.4116 0.61376 2 0 Median 0.7681 0.63904 4.2289 2 0 Median 376010000 158740000 217270000 357380000 147960000 209410000 18636000 10777000 7858600 6974 1333 7140 18509;18510;18511;18512;18513 28985;28986;28987;28988;28989;28990;28991;28992;28993;28994;28995;28996;28997;28998;28999;29000;29001;29002;29003 28987 19 IYVGNLPTDVR MSGWADERGGEGDGRIYVGNLPTDVREKDL GDGRIYVGNLPTDVREKDLEDLFYKYGRIR R I Y V R E 0 1 1 1 0 0 0 1 0 1 1 0 0 0 1 0 1 0 1 2 0 0 11 0 1245.6717 Q13242;A8K3M9;H0YIB4;S4R3G0;B4DFT9 Q13242 16 26 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 7.6225E-23 166.66 2 1.7285 1.961 13.892 2 Median 1.7285 1.961 13.892 2 0 Median NaN NaN NaN 0 0 Median 128160000 42330000 85829000 128160000 42330000 85829000 0 0 0 6975 1709 7141 18514;18515 29004;29005;29006;29007 29005 4 IYVISLAEPR IGSCTQQDVELHVQKIYVISLAEPRLPLQL LHVQKIYVISLAEPRLPLQLDDAVRPEAEG K I Y P R L 1 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 1 0 0 10 0 1159.6601 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9 D3DP78 109 118 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 1.1619E-05 104.01 2 2 1.2115 1.1341 47.968 4 Median 1.6305 1.7254 17.74 2 0 Median 0.91467 0.7737 12.479 2 0 Median 70712000 26833000 43879000 64145000 23509000 40636000 6566200 3323600 3242700 6976 610 7142 18516;18517;18518;18519 29008;29009;29010;29011;29012;29013;29014 29011 7 IYVLLR TQTYQPYNKDWIKEKIYVLLRRQAQQAGK_ YNKDWIKEKIYVLLRRQAQQAGK_______ K I Y L R R 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 6 0 775.49561 A0A024R6D4;P84090 A0A024R6D4 91 96 ERH Enhancer of rudimentary homolog yes no 2 0.035373 116.49 1 0.96446 1.068 NaN 1 Median 0.96446 1.068 NaN 1 0 Median NaN NaN NaN 0 0 Median 62513000 29348000 33165000 62513000 29348000 33165000 0 0 0 6977 201 7143 18520 29015 29015 1 IYYLGSEVPEK GGMFITTGSTDHVIRIYYLGSEVPEKIAEL HVIRIYYLGSEVPEKIAELESHTDKVVAVQ R I Y E K I 0 0 0 0 0 0 2 1 0 1 1 1 0 0 1 1 0 0 2 1 0 0 11 0 1296.6602 Q6RI45 Q6RI45 344 354 BRWD3 Bromodomain and WD repeat-containing protein 3 yes yes 2 0.0094422 59.8 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6978 1860 7144 18521 29016 29016 1 IYYPDFIVPDPK SKDPSKIPSWLKVNKIYYPDFIVPDPKKAA VNKIYYPDFIVPDPKKAAVWEITGAEFSKS K I Y P K K 0 0 0 2 0 0 0 0 0 2 0 1 0 1 3 0 0 0 2 1 0 0 12 0 1465.7493 P49916;B7Z6I3;C4B7Q3 P49916 766 777 LIG3 DNA ligase 3;DNA ligase yes no 2 0.00022717 83.862 2 1 0.70487 0.55228 NaN 1 Median NaN NaN NaN 0 0 Median 0.70487 0.55228 NaN 1 0 Median 3769000 2037400 1731600 0 0 0 3769000 2037400 1731600 6979 1589 7145 18522;18523;18524 29017;29018;29019;29020 29018 4 KADEVLEILK RQLSRFYDDAIVSQKKADEVLEILKTASDD IVSQKKADEVLEILKTASDDRECENQLVLL K K A L K T 1 0 0 1 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1156.6703 O75643;A4FU77 O75643 285 294 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 8.9221E-08 115.18 2 1 0.9677 1.1195 NaN 1 Median 0.9677 1.1195 NaN 1 0 Median NaN NaN NaN 0 0 Median 52597000 20491000 32106000 49452000 20491000 28961000 3145600 0 3145600 6980 1411 7146 18525;18526;18527 29021;29022;29023 29022 3 KADIDLTK AIKGVGRRYAHVVLRKADIDLTKRAGELTE YAHVVLRKADIDLTKRAGELTEDEVERVIT R K A T K R 1 0 0 2 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 8 1 902.5073 P62269 P62269 47 54 RPS18 40S ribosomal protein S18 yes yes 2 0.0020694 110.88 2 1.0836 1.2664 4.7217 2 Median 1.0836 1.2664 4.7217 2 0 Median NaN NaN NaN 0 0 Median 86261000 41595000 44666000 86261000 41595000 44666000 0 0 0 6981 1639 7147 18528;18529 29024;29025 29025 2 KADNVVNIAR CPLEQLLQGINPRTKKADNVVNIARYLYHG NPRTKKADNVVNIARYLYHGNTNPELAFES K K A A R Y 2 1 2 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 10 1 1098.6146 Q92621 Q92621 892 901 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0089301 60.298 1 0.99747 1.1413 NaN 1 Median 0.99747 1.1413 NaN 1 0 Median NaN NaN NaN 0 0 Median 22190000 9639500 12551000 22190000 9639500 12551000 0 0 0 6982 1950 7148 18530 29026 29026 1 KADTEEEFLAFR DTPTSSKPQPKRSLRKADTEEEFLAFRKQT SLRKADTEEEFLAFRKQTPSAGKAMHTPKP R K A F R K 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 12 1 1454.7042 P46013 P46013 1761 1772 MKI67 Antigen KI-67 yes yes 2;3 0.0042924 58.274 2 3.6964 3.1246 NaN 1 Median NaN NaN NaN 0 0 Median 3.6964 3.1246 NaN 1 0 Median 15424000 2287200 13137000 0 0 0 15424000 2287200 13137000 6983 1569 7149 18531;18532 29027;29028 29027 2 KADVEEEFLAFR DTPTNTKQRPKRSLKKADVEEEFLAFRKLT SLKKADVEEEFLAFRKLTPSAGKAMHTPKA K K A F R K 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 12 1 1452.7249 P46013 P46013 1883 1894 MKI67 Antigen KI-67 yes yes 2;3 1.861E-17 138.75 5 4 1.9358 2.3301 21.606 9 Median 1.7722 2.1344 11.153 5 0 Median 3.5072 3.0331 8.4821 4 0 Median 605590000 200100000 405490000 484280000 175800000 308480000 121310000 24298000 97012000 6984 1569 7150 18533;18534;18535;18536;18537;18538;18539;18540;18541 29029;29030;29031;29032;29033;29034;29035;29036;29037;29038;29039;29040;29041;29042;29043;29044;29045;29046;29047;29048;29049 29037 20 KADVEEEFLAFRK DTPTNTKQRPKRSLKKADVEEEFLAFRKLT LKKADVEEEFLAFRKLTPSAGKAMHTPKAA K K A R K L 2 1 0 1 0 0 3 0 0 0 1 2 0 2 0 0 0 0 0 1 0 0 13 2 1580.8199 P46013 P46013 1883 1895 MKI67 Antigen KI-67 yes yes 3 0.00024439 67.964 2 3.6826 3.6983 0.19663 2 Median NaN NaN NaN 0 0 Median 3.6826 3.6983 0.19663 2 0 Median 27867000 5773300 22093000 0 0 0 27867000 5773300 22093000 6985 1569 7151 18542;18543 29050;29051;29052 29050 3 KADVEEEFLALR DTPTSTKQWPKRSLRKADVEEEFLALRKLT SLRKADVEEEFLALRKLTPSAGKAMLTPKP R K A L R K 2 1 0 1 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1418.7405 P46013 P46013 1153 1164 MKI67 Antigen KI-67 yes no 2;3 0.00019319 53.448 1 4 3.4981 2.925 17.558 5 Median 1.8415 1.9877 NaN 1 0 Median 3.5227 2.96 5.457 4 0 Median 41066000 12160000 28906000 10849000 3894400 6955100 30217000 8265900 21951000 6986 1569 7152 18544;18545;18546;18547;18548 29053;29054;29055;29056;29057 29057 5 KADVEEEFLALRK DTPTSTKQWPKRSLRKADVEEEFLALRKLT LRKADVEEEFLALRKLTPSAGKAMLTPKPA R K A R K L 2 1 0 1 0 0 3 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 2 1546.8355 P46013 P46013 1153 1165 MKI67 Antigen KI-67 yes no 3 0.050412 28.812 1 4.0854 4.2323 NaN 1 Median NaN NaN NaN 0 0 Median 4.0854 4.2323 NaN 1 0 Median 12576000 2456200 10120000 0 0 0 12576000 2456200 10120000 6987 1569 7153 18549 29058 29058 1 KADVEEESLALR GTPTIFKPQSKRSLRKADVEEESLALRKRT SLRKADVEEESLALRKRTPSVGKAMDTPKP R K A L R K 2 1 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 12 1 1358.7042 P46013 P46013 2245 2256 MKI67 Antigen KI-67 yes yes 2;3 0.0050318 57.149 1 3 3.0571 2.5292 48.187 3 Median 1.1888 1.3432 NaN 1 0 Median 3.5271 2.9578 22.139 2 0 Median 28507000 10967000 17540000 15322000 8720100 6601600 13185000 2246700 10939000 6988 1569 7154 18550;18551;18552;18553 29059;29060;29061;29062;29063 29059 5 KADVEEESLALRK GTPTIFKPQSKRSLRKADVEEESLALRKRT LRKADVEEESLALRKRTPSVGKAMDTPKPA R K A R K R 2 1 0 1 0 0 3 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 13 2 1486.7991 P46013 P46013 2245 2257 MKI67 Antigen KI-67 yes yes 3 0.00027387 66.485 2 4.0941 4.1115 0.17449 2 Median NaN NaN NaN 0 0 Median 4.0941 4.1115 0.17449 2 0 Median 13660000 2500000 11160000 0 0 0 13660000 2500000 11160000 6989 1569 7155 18554;18555 29064;29065 29064 2 KAEAGAGSATEFQFR RDTYRRSAVPPGADKKAEAGAGSATEFQFR KAEAGAGSATEFQFRGGFGRGRGQPPQ___ K K A F R G 4 1 0 0 0 1 2 2 0 0 0 1 0 2 0 1 1 0 0 0 0 0 15 1 1568.7583 P46783;Q59GE4;Q9NQ39 P46783 139 153 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2;3 4.2178E-15 132.08 3 4 1.1953 1.5137 19.355 7 Linear 1.3065 1.5585 15.415 3 0 Plateau 1.3581 1.1654 10.37 4 0 Linear 356700000 141490000 215210000 319310000 125650000 193660000 37385000 15841000 21544000 6990 1573 7156 18556;18557;18558;18559;18560;18561;18562 29066;29067;29068;29069;29070;29071;29072;29073;29074;29075;29076;29077;29078;29079;29080 29069 15 KAEAVVNTVDISER RKKRRMLKRLEQTRKKAEAVVNTVDISERE KKAEAVVNTVDISEREKVAQLRSLYKKAGL K K A E R E 2 1 1 1 0 0 2 0 0 1 0 1 0 0 0 1 1 0 0 3 0 0 14 1 1529.8049 Q8IY81;B4DKU3 Q8IY81 763 776 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2;3 3.0554E-37 164.48 5 4 0.91567 1.0853 16.64 7 Plateau 0.91246 1.0822 0.77085 3 0 Median 1.054 0.87882 15.247 4 0 Median 376050000 182380000 193680000 325460000 158340000 167110000 50596000 24034000 26563000 6991 1898 7157 18563;18564;18565;18566;18567;18568;18569;18570;18571 29081;29082;29083;29084;29085;29086;29087;29088;29089;29090;29091;29092;29093;29094;29095;29096 29084 16 KAEEATEAQEVVEATPEGACTEPR KKRKRKELRAKEKARKAEEATEAQEVVEAT EVVEATPEGACTEPREPPGLIFNKVEVSED R K A P R E 5 1 0 0 1 1 7 1 0 0 0 1 0 0 2 0 3 0 0 2 0 0 24 1 2601.1864 B3KNS8;O75683 B3KNS8 170 193 SURF6 Surfeit locus protein 6 yes no 3 0.006047 22.313 2 1.1297 0.94163 4.218 2 Median NaN NaN NaN 0 0 Median 1.1297 0.94163 4.218 2 0 Median 8120100 3287100 4833000 0 0 0 8120100 3287100 4833000 6992 918 7158 18572;18573 29097;29098;29099;29100 29097 4 KAEEELGELEAK YDTRKSRLELQKDVRKAEEELGELEAKLNE DVRKAEEELGELEAKLNENLRRNIERINNE R K A A K L 2 0 0 0 0 0 5 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 12 1 1344.6773 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 684 695 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 1.683E-17 139.89 1 2 1.3557 1.1609 1.6476 2 Median NaN NaN NaN 0 0 Median 1.3557 1.1609 1.6476 2 0 Median 27139000 20843000 6295800 15300000 15300000 0 11839000 5542900 6295800 6993 803 7159 18574;18575;18576 29101;29102;29103;29104;29105;29106 29106 6 KAEGTVFTEEDFQK GRKACDRPVAKTKKKKAEGTVFTEEDFQKF KKAEGTVFTEEDFQKFQQEYFGS_______ K K A Q K F 1 0 0 1 0 1 3 1 0 0 0 2 0 2 0 0 2 0 0 1 0 0 14 1 1627.773 A0A024R1T1;Q86WX3 A0A024R1T1 115 128 RPS19BP1 Active regulator of SIRT1 yes no 3 0.019556 22.803 2 1.324 1.1614 2.8887 2 Median NaN NaN NaN 0 0 Median 1.324 1.1614 2.8887 2 0 Median 4921500 2216800 2704700 0 0 0 4921500 2216800 2704700 6994 87 7160 18577;18578 29107;29108;29109 29108 3 KAEIDILAAEYISTVK NFQLMRELDQRTEDKKAEIDILAAEYISTV AEIDILAAEYISTVKTLSPDQRVERLQKIQ K K A V K T 3 0 0 1 0 0 2 0 0 3 1 2 0 0 0 1 1 0 1 1 0 0 16 1 1762.9717 E9PEN0;B7Z6R2;A0A1B0GW41;Q8WYH8 E9PEN0 39 54 ING5 Inhibitor of growth protein 5 yes no 3 0.0021864 34.274 2 1.4833 1.2666 17.216 2 Median NaN NaN NaN 0 0 Median 1.4833 1.2666 17.216 2 0 Median 12927000 5762200 7164900 0 0 0 12927000 5762200 7164900 6995 633 7161 18579;18580 29110;29111;29112 29110 3 KAELLDNEK IETEIKNKMQQKSQKKAELLDNEKPAAVVA QQKSQKKAELLDNEKPAAVVAPITTGYTVK K K A E K P 1 0 1 1 0 0 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1058.5608 Q6NVY0;A0A024R904;Q9HB71;B4DFD3 Q6NVY0 51 59 CACYBP Calcyclin-binding protein yes no 2 3.8781E-25 175.93 2 5.3138 6.2867 NaN 1 Median 5.3138 6.2867 NaN 1 0 Median NaN NaN NaN 0 0 Median 31174000 2601100 28573000 31174000 2601100 28573000 0 0 0 6996 267 7162 18581;18582 29113;29114 29114 2 KAENAEGQTPAIGPDGEPLDETSQMSDLPVK AAQVAKEKKKKKKKKKAENAEGQTPAIGPD EPLDETSQMSDLPVKVIHVESGKILTGTDA K K A V K V 3 0 1 3 0 2 4 3 0 1 2 2 1 0 4 2 2 0 0 1 0 0 31 1 3223.5191 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6 A7E2E1 588 618 SMARCA4 Transcription activator BRG1 yes no 3 2.0444E-12 54.311 1 0.93355 1.0792 NaN 1 Median 0.93355 1.0792 NaN 1 0 Median NaN NaN NaN 0 0 Median 34226000 16758000 17468000 34226000 16758000 17468000 0 0 0 6997 695 7163 18583 29115 29115 536 1 KAEQGSEEEGEGEEEEEEGGESK IKEKEPPKQGKEKAKKAEQGSEEEGEGEEE EGEGEEEEEEGGESKADDPYAHLSKKEKKK K K A S K A 1 0 0 0 0 1 12 5 0 0 0 2 0 0 0 2 0 0 0 0 0 0 23 1 2480.9787 Q8NE71;B4DNU2;Q5STZ8 Q8NE71 223 245 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 3.2792E-08 53.747 1 1 1.2066 1.1978 42.367 2 Median 1.4141 1.6161 NaN 1 0 Median 1.0295 0.88769 NaN 1 0 Median 20939000 9458200 11481000 15455000 6853100 8601800 5484500 2605200 2879300 6998 1926 7164 18584;18585 29116;29117;29118 29116 3 KAEVVQVIR QRRAENLKRRLENERKAEVVQVIRNPAKLK RLENERKAEVVQVIRNPAKLKRAKKKQLRS R K A I R N 1 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 9 1 1040.6342 Q9H6F5 Q9H6F5 315 323 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.0026596 83.456 1 0.46362 0.40671 NaN 1 Median NaN NaN NaN 0 0 Median 0.46362 0.40671 NaN 1 0 Median 29822000 20117000 9705100 0 0 0 29822000 20117000 9705100 6999 2037 7165 18586 29119 29119 1 KAHLGTALK RSHRRDQKWHDKQYKKAHLGTALKANPFGG HDKQYKKAHLGTALKANPFGGASHAKGIVL K K A L K A 2 0 0 0 0 0 0 1 1 0 2 2 0 0 0 0 1 0 0 0 0 0 9 1 937.5709 A8K517;P62266;D6RD47;D6RDJ2;D6RIX0;D6R9I7 A8K517 29 37 RPS23 40S ribosomal protein S23 yes no 2;3 0.0032007 64.04 4 0.75145 0.86362 13.219 4 Median 0.75145 0.86362 13.219 4 0 Median NaN NaN NaN 0 0 Median 73743000 39517000 34226000 73743000 39517000 34226000 0 0 0 7000 744 7166 18587;18588;18589;18590 29120;29121;29122;29123;29124;29125 29121 6 KAPGCVLSNPDQK RPECREDFVLSITGKKAPGCVLSNPDQKGK GKKAPGCVLSNPDQKGKMRRIDCLRQADKV K K A Q K G 1 0 1 1 1 1 0 1 0 0 1 2 0 0 2 1 0 0 0 1 0 0 13 1 1412.7082 Q6FI30;B7Z4T6;P08651 Q6FI30 91 103 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 2;3 0.0046641 73.435 2 1 0.75087 0.74511 13.781 2 Median 0.60174 0.67593 NaN 1 0 Median 0.93697 0.82137 NaN 1 0 Median 8658400 4462700 4195600 6509400 3375000 3134400 2149000 1087800 1061300 7001 1091 7167 18591;18592;18593 29126;29127;29128 29127 3 KAPLNIPGTPVLEDFPQNDDEK ASSPSERVFPMPLPRKAPLNIPGTPVLEDF GTPVLEDFPQNDDEKERLQRRRSRVFDLQF R K A E K E 1 0 2 3 0 1 2 1 0 1 2 2 0 1 4 0 1 0 0 1 0 0 22 1 2436.2173 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470;C9JZP1 A8K4T8 41 62 NCAPH Condensin complex subunit 2 yes no 3 9.1069E-07 49.076 2 2.2213 1.8858 16.513 2 Median NaN NaN NaN 0 0 Median 2.2213 1.8858 16.513 2 0 Median 23308000 7591900 15716000 0 0 0 23308000 7591900 15716000 7002 740 7168 18594;18595 29129;29130;29131 29130 3 KASGPPVSELITK PVKKKARKSAGAAKRKASGPPVSELITKVV KRKASGPPVSELITKVVAASKERSGVSLAA R K A T K V 1 0 0 0 0 0 1 1 0 1 1 2 0 0 2 2 1 0 0 1 0 0 13 1 1325.7555 Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16402;P16403 Q4VB24 34 46 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 0.0026819 57.164 1 0.93383 1.0681 NaN 1 Median 0.93383 1.0681 NaN 1 0 Median NaN NaN NaN 0 0 Median 17049000 8993900 8054600 17049000 8993900 8054600 0 0 0 7003 656;1490 7169 18596 29132 29132 1 KATGPPVSELITK KKATKKAAGAGAAKRKATGPPVSELITKAV KRKATGPPVSELITKAVAASKERNGLSLAA R K A T K A 1 0 0 0 0 0 1 1 0 1 1 2 0 0 2 1 2 0 0 1 0 0 13 1 1339.7711 P16401 P16401 37 49 HIST1H1B Histone H1.5 yes yes 2 0.012141 45.28 1 0.49108 0.42209 NaN 1 Median NaN NaN NaN 0 0 Median 0.49108 0.42209 NaN 1 0 Median 3631100 2490500 1140600 0 0 0 3631100 2490500 1140600 7004 1489 7170 18597 29133 29133 1 KCDISLQFFLPFSLGK RFSKSQLDIIIHSLKKCDISLQFFLPFSLG CDISLQFFLPFSLGKEDGSGDRGDGPFRLG K K C G K E 0 0 0 1 1 1 0 1 0 1 3 2 0 3 1 2 0 0 0 0 0 0 16 1 1898.9964 P13010 P13010 156 171 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 0.00042087 58.671 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24195000 24195000 0 24195000 24195000 0 0 0 0 7005 1476 7171 18598;18599 29134;29135 29135 2 KCPFTGNVSIR FKTPKEAIEGTYIDKKCPFTGNVSIRGRIL YIDKKCPFTGNVSIRGRILSGVVTKMKMQR K K C I R G 0 1 1 0 1 0 0 1 0 1 0 1 0 1 1 1 1 0 0 1 0 0 11 1 1277.655 P62280;M0QZC5 P62280 59 69 RPS11 40S ribosomal protein S11 yes no 2;3 0.012945 53.683 2 2 0.95481 0.8789 10.654 3 Median 0.86564 1.0188 NaN 1 0 Median 0.99583 0.85327 4.1859 2 0 Median 137060000 86646000 50412000 108220000 73043000 35172000 28843000 13603000 15240000 7006 1641 7172 18600;18601;18602;18603 29136;29137;29138;29139 29136 4 KDDAITAYK ARLVHPGVAEVVFVKKDDAITAYKKYNNRC EVVFVKKDDAITAYKKYNNRCLDGQPMKCN K K D Y K K 2 0 0 2 0 0 0 0 0 1 0 2 0 0 0 0 1 0 1 0 0 0 9 1 1023.5237 Q96DI9;F6VRR5;B4E0L0;Q9BY77;B4DMM2 Q96DI9 320 328 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 0.025314 55.064 1 0.67852 0.75618 NaN 1 Median 0.67852 0.75618 NaN 1 0 Median NaN NaN NaN 0 0 Median 5876500 2494600 3382000 5876500 2494600 3382000 0 0 0 7007 1063 7173 18604 29140 29140 1 KDDEVQVVR KELRQKYNVRSMPIRKDDEVQVVRGHYKGQ RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY R K D V R G 0 1 0 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 3 0 0 9 1 1086.5669 Q6IBH6;P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KTJ8;A0A024RBF6;E5RIT6;Q9UNX3 Q6IBH6 51 59 RPL26;hCG_26523;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 no no 2 1.9907E-103 255.84 2 2 0.6461 0.66456 26.282 4 Median 0.69048 0.82613 4.3432 2 0 Median 0.60509 0.5274 6.2568 2 0 Median 535840000 327460000 208380000 423070000 256380000 166690000 112770000 71082000 41688000 7008 1629;1214 7174 18605;18606;18607;18608 29141;29142;29143;29144;29145;29146;29147 29142 7 KDDFLGAAEGK QFFKISPDLNIKCERKDDFLGAAEGKLQCN KCERKDDFLGAAEGKLQCNRLMPNSQKDCH R K D G K L 2 0 0 2 0 0 1 2 0 0 1 2 0 1 0 0 0 0 0 0 0 0 11 1 1149.5666 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 751 761 CDCA2 Cell division cycle-associated protein 2 yes no 2 0.036864 42.976 1 1.4469 1.2461 NaN 1 Median NaN NaN NaN 0 0 Median 1.4469 1.2461 NaN 1 0 Median 5989500 2478500 3510900 0 0 0 5989500 2478500 3510900 7009 1233 7175 18609 29148 29148 1 KDDINLLPSK DFHKRTPNRYHLRSKKDDINLLPSKSSVTK HLRSKKDDINLLPSKSSVTKICRDPQTPVL K K D S K S 0 0 1 2 0 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 10 1 1141.6343 Q643R0;Q9ULW0;B3KM90 Q643R0 348 357 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 2.3882E-16 159.83 2 2 0.78933 0.79194 7.9149 4 Median 0.63562 0.74385 9.2432 2 0 Median 0.95004 0.81482 4.4098 2 0 Median 195910000 116670000 79239000 185500000 111220000 74284000 10405000 5449700 4955000 7010 1837 7176 18610;18611;18612;18613 29149;29150;29151;29152;29153 29150 5 KDEDLFR FDKAYVVLGQFLVLKKDEDLFREWLKDTCG LGQFLVLKKDEDLFREWLKDTCGANAKQSR K K D F R E 0 1 0 2 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 921.4556 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 54 60 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 1.3676E-60 230.85 2 0.83099 1.006 3.0979 2 Median 0.83099 1.006 3.0979 2 0 Median NaN NaN NaN 0 0 Median 2573000000 1406100000 1167000000 2573000000 1406100000 1167000000 0 0 0 7011 181 7177 18614;18615 29154;29155;29156 29156 3 KDENESSAPADGEGGSELQPK QALPASPALKNKRPRKDENESSAPADGEGG SAPADGEGGSELQPKNKRMTISRLVLEEDS R K D P K N 2 0 1 2 0 1 4 3 0 0 1 2 0 0 2 3 0 0 0 0 0 0 21 1 2143.9505 Q15554;H3BR06;U3KQ35;J3KSZ6 Q15554 375 395 TERF2 Telomeric repeat-binding factor 2 yes no 3 7.2955E-09 75.054 2 2 1.5673 1.3661 16.595 4 Median 1.2902 1.4812 27.58 2 0 Median 1.5789 1.3661 0.28469 2 0 Median 29011000 11570000 17440000 22424000 9004000 13420000 6586800 2566400 4020500 7012 1762 7178 18616;18617;18618;18619 29157;29158;29159;29160;29161;29162;29163;29164;29165 29160 9 KDGNASGTTLLEALDCILPPTRPTDK PSANMPWFKGWKVTRKDGNASGTTLLEALD EALDCILPPTRPTDKPLRLPLQDVYKIGGI R K D D K P 2 1 1 3 1 0 1 2 0 1 4 2 0 0 3 1 4 0 0 0 0 0 26 2 2782.4171 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q6P4C9;A0A087WV01;Q9H2I7;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q53HR1 Q6IPT9 219 244 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 no no 4 3.1384E-06 43.494 2 1.8914 1.8994 30.467 2 Median NaN NaN NaN 0 0 Median 1.8914 1.8994 30.467 2 0 Median 12952000 4228100 8723500 0 0 0 12952000 4228100 8723500 7013 1658;1790 7179 18620;18621 29166;29167;29168;29169 29168 4 KDPGVPNSAPFK KLRKEAKKRGHKKPRKDPGVPNSAPFKEAL KPRKDPGVPNSAPFKEALLREAELRKQRLE R K D F K E 1 0 1 1 0 0 0 1 0 0 0 2 0 1 3 1 0 0 0 1 0 0 12 1 1255.6561 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5;C9JYH9 A0A024R2Z6 34 45 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2;3 0.00054528 72.652 1 3 1.1091 1.0119 10.977 4 Median 0.98146 1.1695 NaN 1 0 Median 1.1783 1.0062 7.1522 3 0 Median 48450000 23105000 25345000 21496000 10653000 10844000 26954000 12452000 14502000 7014 125 7180 18622;18623;18624;18625 29170;29171;29172;29173;29174;29175;29176 29174 7 KDPSLPVASSSSSSSK AGSKSASRTHRGSHRKDPSLPVASSSSSSS DPSLPVASSSSSSSKRGKKMCSDGEKAEKR R K D S K R 1 0 0 1 0 0 0 0 0 0 1 2 0 0 2 8 0 0 0 1 0 0 16 1 1562.7788 D2CPI8 D2CPI8 163 178 yes yes 3 0.062073 9.7575 1 0.58308 0.51251 NaN 1 Median NaN NaN NaN 0 0 Median 0.58308 0.51251 NaN 1 0 Median 1942600 974980 967640 0 0 0 1942600 974980 967640 7015 1184 7181 18626 29177 29177 1 KEDALLYQSK LNSTRGDADMYDLPKKEDALLYQSKGYNDD YDLPKKEDALLYQSKGYNDDYYEESYFTTR K K E S K G 1 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 1 0 0 0 10 1 1193.6292 P50402;Q5HY57 P50402 79 88 EMD Emerin yes no 2 9.829E-152 281.88 2 2 0.70383 0.63898 15.744 4 Median 0.63882 0.74803 16.116 2 0 Median 0.70764 0.60115 2.4642 2 0 Median 271360000 163850000 107500000 230660000 140370000 90285000 40700000 23480000 17220000 7016 1590 7182 18627;18628;18629;18630 29178;29179;29180;29181;29182;29183;29184 29178 7 KEDGFEDGVEDNK AKHDGEDVLGNKVERKEDGFEDGVEDNKLK ERKEDGFEDGVEDNKLKENMERACLMSLDI R K E N K L 0 0 1 3 0 0 3 2 0 0 0 2 0 1 0 0 0 0 0 1 0 0 13 1 1480.6318 Q14191 Q14191 370 382 WRN Werner syndrome ATP-dependent helicase yes yes 2 9.2568E-14 135.58 2 0.95315 1.0904 22.622 2 Median 0.95315 1.0904 22.622 2 0 Median NaN NaN NaN 0 0 Median 16501000 8312500 8188200 16501000 8312500 8188200 0 0 0 7017 1728 7183 18631;18632 29185;29186;29187 29187 3 KEDINLSVR TVHVEVHQRGSSTAKKEDINLSVRKLLNRH GSSTAKKEDINLSVRKLLNRHNIVFGDYTW K K E V R K 0 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 1 1072.5877 Q15645;H0YAL2 Q15645 35 43 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 0.00047966 103.42 2 1.6488 1.9533 11.534 2 Median 1.6488 1.9533 11.534 2 0 Median NaN NaN NaN 0 0 Median 113370000 40432000 72941000 113370000 40432000 72941000 0 0 0 7018 1763 7184 18633;18634 29188;29189;29190;29191 29189 4 KEDLEFQAK ETLRPYQSPFMDREKKEDLEFQAKHMDQPL FMDREKKEDLEFQAKHMDQPLPTAIGLYKN K K E A K H 1 0 0 1 0 1 2 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 9 1 1106.5608 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPJ1;D2CPJ3;D2CPI8 A0A024R2M8 620 628 XPC DNA repair protein complementing XP-C cells no no 2 4.2731E-17 166.07 2 2 0.84302 0.76646 15.48 4 Median 0.68335 0.79955 26.041 2 0 Median 0.90201 0.76646 4.7839 2 0 Median 225550000 133640000 91903000 166890000 102140000 64757000 58651000 31505000 27146000 7019 118;1184 7185 18635;18636;18637;18638 29192;29193;29194;29195;29196 29196 5 KEDLYLK GLKVRIMGPNYTPGKKEDLYLKPIQRTILM GPNYTPGKKEDLYLKPIQRTILMMGRYVEP K K E L K P 0 0 0 1 0 0 1 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 7 1 907.50148 P13639;Q8TA90;Q6PK56;B4DRE8 P13639 439 445 EEF2 Elongation factor 2 yes no 2 0.051352 68.383 1 2.3174 1.9995 NaN 1 Median NaN NaN NaN 0 0 Median 2.3174 1.9995 NaN 1 0 Median 3054200 910160 2144100 0 0 0 3054200 910160 2144100 7020 1478 7186 18639 29197 29197 1 KEEELQAALAR ELQAQIAELKMQLAKKEEELQAALARVEEE QLAKKEEELQAALARVEEEAAQKNMALKKI K K E A R V 3 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1256.6725 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;Q99529;Q7Z7R0;A0A0C4DFM8;Q7Z406 A0A024R1N1 1081 1091 MYH9;MYH11;MYH14 Myosin-9;Myosin-11;Myosin-14 no no 2;3 2.5541E-32 188.28 4 1 1.6529 1.962 9.7431 5 Median 1.636 1.9268 4.4121 4 0 Median 2.72 2.3787 NaN 1 0 Median 625150000 242270000 382880000 599670000 235670000 364000000 25481000 6606500 18875000 7021 81;1875 7187 18640;18641;18642;18643;18644 29198;29199;29200;29201;29202;29203;29204;29205;29206 29202 9 KEEENASVIDSAELQAYPALVVEK DAYMTLADFCDQQLRKEEENASVIDSAELQ DSAELQAYPALVVEKMLKALKLNSNEARLK R K E E K M 4 0 1 1 0 1 5 0 0 1 2 2 0 0 1 2 0 0 1 3 0 0 24 1 2631.3279 P78527 P78527 3426 3449 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0001616 35.016 2 0.4271 0.36528 NaN 1 Median NaN NaN NaN 0 0 Median 0.4271 0.36528 NaN 1 0 Median 16479000 13281000 3197600 0 0 0 16479000 13281000 3197600 7022 1665 7188 18645;18646 29207;29208 29207 2 KEEILLIK AQLTQRSVHICHVARKEEILLIKAAKARGL HICHVARKEEILLIKAAKARGLPVTCEVAP R K E I K A 0 0 0 0 0 0 2 0 0 2 2 2 0 0 0 0 0 0 0 0 0 0 8 1 984.62193 Q53SY7;F8VPD4;P27708 Q53SY7 1544 1551 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.011858 74.92 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4801700 0 4801700 4801700 0 4801700 0 0 0 7023 1259 7189 18647 29209 29209 1 KEELTLEGIR VTKKFMRDPIRILVKKEELTLEGIRQFYIN RILVKKEELTLEGIRQFYINVEREEWKLDT K K E I R Q 0 1 0 0 0 0 3 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1186.6558 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;B4DNH2;J3KSZ0;J3KTN0;B4DKP9 A8K7F6 238 247 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2;3 1.2698E-51 205.53 3 2 1.762 2.0891 33.421 5 Median 1.8444 2.1024 3.4464 3 0 Median 1.3575 1.1639 3.0371 2 0 Median 432880000 156320000 276560000 399660000 142150000 257520000 33215000 14169000 19046000 7024 770 7190 18648;18649;18650;18651;18652 29210;29211;29212;29213;29214;29215;29216;29217;29218;29219 29215 9 KEELVAEQALK GLLWTCIMNAVEWNKKEELVAEQALKHLKQ EWNKKEELVAEQALKHLKQYAPLLAVFSSQ K K E L K H 2 0 0 0 0 1 3 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 11 1 1256.6976 B5MCE7;B5MCH7;B7Z4K8;E7ETZ4;B3KM68;A0A024RA42;Q9Y6E2 B5MCE7 116 126 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 1.6771E-22 163.78 2 2.8042 3.2726 15.623 2 Median 2.8042 3.2726 15.623 2 0 Median NaN NaN NaN 0 0 Median 35258000 8729300 26528000 35258000 8729300 26528000 0 0 0 7025 293 7191 18653;18654 29220;29221;29222;29223 29222 4 KEENSTEEQALEDQNAK KYYKEIEDRQKLKRKKEENSTEEQALEDQN ENSTEEQALEDQNAKRAITYQIAKNRGLTP K K E A K R 2 0 2 1 0 2 5 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 17 1 1961.8814 Q9NQZ2 Q9NQZ2 392 408 UTP3 Something about silencing protein 10 yes yes 3 0.013375 14.041 1 0.87388 0.96802 NaN 1 Median 0.87388 0.96802 NaN 1 0 Median NaN NaN NaN 0 0 Median 5020100 2006400 3013700 5020100 2006400 3013700 0 0 0 7026 2063 7192 18655 29224 29224 1 KEEPEPETEAVSSSQEIPTMPQPIEK PRAKKGRRNQSVEPKKEEPEPETEAVSSSQ SSSQEIPTMPQPIEKVSVSTQTKKLSASSP K K E E K V 1 0 0 0 0 2 7 0 0 2 0 2 1 0 5 3 2 0 0 1 0 0 26 1 2909.3852 Q15326;E7ENI9;J3QKD2;Q5BJG6;B7Z3W2;B0QZE2;B7Z2J6;A0A0A0MRY2;Q5UGI2;B7Z3Z1 Q15326 408 433 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 8.962E-10 55.526 1 2 1.918 1.9526 24.462 3 Median 1.918 2.2131 NaN 1 0 Median 1.894 1.6416 24.534 2 0 Median 36096000 10354000 25742000 29747000 7874800 21872000 6349700 2479500 3870200 7027 1758 7193;7194 18656;18657;18658 29225;29226;29227;29228 29226 1627 4 KEEQEVQATLESEEVDLNAGLHGNWTLENAK PTWDRGANLKDYYSRKEEQEVQATLESEEV LNAGLHGNWTLENAKARLNQYFQKEKIQGE R K E A K A 3 0 3 1 0 2 7 2 1 0 4 2 0 0 0 1 2 1 0 2 0 0 31 1 3480.6645 Q08211;Q58F26;Q6PJK6 Q08211 152 182 DHX9 ATP-dependent RNA helicase A yes no 4 0.017138 23.983 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6196800 0 6196800 0 0 0 6196800 0 6196800 7028 1691 7195 18659 29229 29229 1 KEESEESDDDMGFGLFD AGSAPAAAEEKKDEKKEESEESDDDMGFGL ESEESDDDMGFGLFD_______________ K K E F D - 0 0 0 4 0 0 4 2 0 0 1 1 1 2 0 2 0 0 0 0 0 0 17 1 1948.752 A0A024RCA7;P05387;H0YDD8;Q6ICQ4;Q6FG99;A0A024R608;P05386 A0A024RCA7 99 115 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 no no 2 2.5062E-05 85.536 2 1.5662 1.7637 1.7743 2 Median 1.5662 1.7637 1.7743 2 0 Median NaN NaN NaN 0 0 Median 200180000 79655000 120520000 200180000 79655000 120520000 0 0 0 7029 356;195 7196 18660;18661 29230;29231 29231 157 2 KEETQPPVALK DRKNPLPPSVGVVDKKEETQPPVALKKEGI VVDKKEETQPPVALKKEGIRRIGRRPDQQL K K E L K K 1 0 0 0 0 1 2 0 0 0 1 2 0 0 2 0 1 0 0 1 0 0 11 1 1238.6871 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 92 102 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 2 2.9797E-12 147.3 2 1.9323 2.259 4.0601 2 Median 1.9323 2.259 4.0601 2 0 Median NaN NaN NaN 0 0 Median 87489000 27108000 60380000 87489000 27108000 60380000 0 0 0 7030 1832 7197 18662;18663 29232;29233;29234;29235 29235 4 KEGDLIAAQAR KVREEFKELKARNTKKEGDLIAAQARLKDL RNTKKEGDLIAAQARLKDLEALLNSKEAAL K K E A R L 3 1 0 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 1 1170.6357 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 123 133 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 3.7832E-08 121.83 3 1.2982 1.5244 7.1101 3 Median 1.2982 1.5244 7.1101 3 0 Median NaN NaN NaN 0 0 Median 112640000 46450000 66195000 112640000 46450000 66195000 0 0 0 7031 1440 7198 18664;18665;18666 29236;29237;29238;29239;29240 29237 5 KEGEEQPVLPEETESSK AANLKNVMNMQNRQKKEGEEQPVLPEETES GEEQPVLPEETESSKPGPSAHDLAAQLKSS K K E S K P 0 0 0 0 0 1 6 1 0 0 1 2 0 0 2 2 1 0 0 1 0 0 17 1 1914.9058 E7EMW7;O95071 E7EMW7 2114 2130 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 3 0.030277 26.837 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4391200 0 4391200 4391200 0 4391200 0 0 0 7032 1218 7199 18667 29241 29241 1 KEPLYVGVDDDK TQTRKVEDLARISLKKEPLYVGVDDDKANA SLKKEPLYVGVDDDKANATVDGLEQGYVVC K K E D K A 0 0 0 3 0 0 1 1 0 0 1 2 0 0 1 0 0 0 1 2 0 0 12 1 1376.6824 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452;Q59FR7 Q4ZG72 257 268 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 6.9585E-05 99.215 2 1 1.2224 1.4195 27.698 3 Median 1.1733 1.3743 4.5784 2 0 Median 2.5941 2.2131 NaN 1 0 Median 156330000 67278000 89050000 138440000 61881000 76561000 17887000 5397100 12490000 7033 303 7200 18668;18669;18670 29242;29243;29244;29245 29243 3 KESYSIYVYK TKAQKKDGKKRKRSRKESYSIYVYKVLKQV RKRSRKESYSIYVYKVLKQVHPDTGISSKA R K E Y K V 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 3 1 0 0 10 1 1278.6496 Q16778;P33778;P23527;A0A024RCJ2;P06899;Q8N257;Q6DRA6;Q6DN03 Q16778 35 44 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C yes no 2 2.2493E-09 132.25 2 2 1.272 0.86958 19.454 4 Linear 0.6289 0.73765 1.2102 2 0 Median 1.2142 1.0322 2.1901 2 0 Median 257560000 124350000 133220000 68893000 39586000 29308000 188670000 84759000 103910000 7034 1513 7201 18671;18672;18673;18674 29246;29247;29248;29249;29250;29251;29252;29253;29254;29255;29256;29257;29258 29256 12 KESYSVYVYK TKAQKKDGKKRKRSRKESYSVYVYKVLKQV RKRSRKESYSVYVYKVLKQVHPDTGISSKA R K E Y K V 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 3 2 0 0 10 1 1264.634 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;A0A024RCL8;B4DR52;P57053;O60814;Q0D2M2 B2R4S9 35 44 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K yes no 2 8.1881E-12 144.77 3 2 0.78294 0.79956 4.1222 4 Median 0.68879 0.80719 0.010422 2 0 Median 0.90033 0.76563 4.7987 2 0 Median 429110000 217570000 211540000 79921000 34468000 45453000 349190000 183100000 166090000 7035 34 7202 18675;18676;18677;18678;18679 29259;29260;29261;29262;29263;29264;29265;29266;29267;29268;29269;29270 29262 11 KETESEAEDNLDDLEK TTLAQEEPVAAPEPKKETESEAEDNLDDLE ETESEAEDNLDDLEKHLREKALRSMRKAQV K K E E K H 1 0 1 3 0 0 5 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 16 1 1863.8222 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3 A0A0S2Z4W1 870 885 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 3 0.048689 12.491 1 1.4072 1.6089 NaN 1 Median 1.4072 1.6089 NaN 1 0 Median NaN NaN NaN 0 0 Median 16156000 6577200 9579200 16156000 6577200 9579200 0 0 0 7036 570 7203 18680 29271 29271 0 KFDILVTTPNR KAAVAAKKFGPKSSKKFDILVTTPNRLIYL KSSKKFDILVTTPNRLIYLLKQDPPGIDLA K K F N R L 0 1 1 1 0 0 0 0 0 1 1 1 0 1 1 0 2 0 0 1 0 0 11 1 1302.7296 Q9Y2R4;Q59H21;B3KM65 Q9Y2R4 285 295 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 3 0.033111 29.341 1 1.4164 1.5606 NaN 1 Median 1.4164 1.5606 NaN 1 0 Median NaN NaN NaN 0 0 Median 6206700 2449300 3757300 6206700 2449300 3757300 0 0 0 7037 2126 7204 18681 29272 29272 0 KFDPFLDLSLDIPSQFR LQNEVNCLICGTESRKFDPFLDLSLDIPSQ DPFLDLSLDIPSQFRSKRSKNQENGPVCSL R K F F R S 0 1 0 3 0 1 0 0 0 1 3 1 0 3 2 2 0 0 0 0 0 0 17 1 2037.0571 B3KMX7;Q498Y2;H0YLB7;H0YKU8;Q6JHV3;H0YMI4;Q9Y6I4;B4DWJ6;Q9Y2R8 B3KMX7 248 264 USP3 Ubiquitinyl hydrolase 1;Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 3 3.4562E-07 68.82 1 0.96632 1.0691 NaN 1 Median 0.96632 1.0691 NaN 1 0 Median NaN NaN NaN 0 0 Median 7473300 3810400 3662900 7473300 3810400 3662900 0 0 0 7038 910 7205 18682 29273 29273 1 KFDQLLAEEK DHQRQSACNLEKKQKKFDQLLAEEKTISAK EKKQKKFDQLLAEEKTISAKYAEERDRAEA K K F E K T 1 0 0 1 0 1 2 0 0 0 2 2 0 1 0 0 0 0 0 0 0 0 10 1 1219.6449 A0A024R1N1;P35579;A0A0U4BW16;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;Q7Z7R0;O14729;O14794;Q68D89;A0A0C4DFM8;B4E177;A1L2Z2;P35580;Q7Z406 A0A024R1N1 1445 1454 MYH9;MYH11;DKFZp686D10126;MYH14;MYH10 Myosin-9;Myosin-11;Myosin-10;Myosin-14 no no 2 6.1943E-30 176.65 2 2 1.8141 2.1417 8.8106 3 Median 1.694 1.9994 9.7226 2 0 Median 2.5957 2.1996 NaN 1 0 Median 246910000 88294000 158620000 215470000 83615000 131860000 31443000 4679600 26763000 7039 81;1544;1875 7206 18683;18684;18685;18686 29274;29275;29276;29277;29278;29279 29275 6 KFEQGFITDPVVLSPSHTVGDVLEAK NCTPEFQANEVRKVKKFEQGFITDPVVLSP VLSPSHTVGDVLEAKMRHGFSGIPITETGT K K F A K M 1 0 0 2 0 1 2 2 1 1 2 2 0 2 2 2 2 0 0 4 0 0 26 1 2812.4647 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;C9K0R9 B4DNJ7 109 134 IMPDH;DKFZp781N0678;IMPDH1 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 yes no 3 0.054979 7.2755 1 1.734 1.5 NaN 1 Median NaN NaN NaN 0 0 Median 1.734 1.5 NaN 1 0 Median 3933500 994780 2938700 0 0 0 3933500 994780 2938700 7040 935 7207 18687 29280 29280 1 KFPGSAALVGAVR RQAGPAPAAATAASKKFPGSAALVGAVRKP SKKFPGSAALVGAVRKPVVPSVPMASPAPG K K F V R K 3 1 0 0 0 0 0 2 0 0 1 1 0 1 1 1 0 0 0 2 0 0 13 1 1271.735 Q9BTC0 Q9BTC0 627 639 DIDO1 Death-inducer obliterator 1 yes yes 3 0.0079345 25.718 1 1.9126 1.617 NaN 1 Median NaN NaN NaN 0 0 Median 1.9126 1.617 NaN 1 0 Median 3656500 1408700 2247800 0 0 0 3656500 1408700 2247800 7041 2002 7208 18688 29281;29282 29282 2 KFSNSIPQSQTGNSETATPTNVDLPQVIPK PHTHNMDGFFIAKFKKFSNSIPQSQTGNSE TATPTNVDLPQVIPKSENSSQPAKKAKGAA K K F P K S 1 0 3 1 0 3 1 1 0 2 1 2 0 1 4 4 4 0 0 2 0 0 30 1 3197.6204 P46087 P46087 586 615 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 3 0.00026947 27.863 1 2 1.1357 0.96607 13.829 3 Plateau 1.0661 1.219 NaN 1 0 Median 1.1292 0.95961 0.94832 2 0 Median 72660000 36544000 36116000 16419000 10621000 5798100 56241000 25923000 30318000 7042 1570 7209 18689;18690;18691 29283;29284;29285;29286;29287;29288;29289;29290;29291 29287 9 KFYPLEIDYGQDEEAVK TGNAWHSKNFTKYPKKFYPLEIDYGQDEEA YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP K K F V K K 1 0 0 2 0 1 3 1 0 1 1 2 0 1 1 0 0 0 2 1 0 0 17 1 2042.9837 A0A024R3T8;P09874;B4E0E1 A0A024R3T8 637 653 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 1.5635E-05 75.239 2 1.1328 0.96282 6.3368 2 Median NaN NaN NaN 0 0 Median 1.1328 0.96282 6.3368 2 0 Median 35491000 17060000 18431000 0 0 0 35491000 17060000 18431000 7043 139 7210 18692;18693 29292;29293;29294 29292 3 KGDAASQFLVFCQK PPGRKKTTVSMPRSRKGDAASQFLVFCQKH RKGDAASQFLVFCQKHRDEVVAEHPDASGE R K G Q K H 2 0 0 1 1 2 0 1 0 0 1 2 0 2 0 1 0 0 0 1 0 0 14 1 1597.7923 O96028;Q05CW4;H0Y9L4 O96028 453 466 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 0.0057601 44.132 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2278900 0 2278900 0 0 0 2278900 0 2278900 7044 1435 7211 18694 29295 29295 1 KGDECELLGHSK RGTVVTGTLERGILKKGDECELLGHSKNIR ILKKGDECELLGHSKNIRTVVTGIEMFHKS K K G S K N 0 0 0 1 1 0 2 2 1 0 2 2 0 0 0 1 0 0 0 0 0 0 12 1 1371.6453 P49411 P49411 286 297 TUFM Elongation factor Tu, mitochondrial yes yes 3 0.001043 54.199 1 1.4064 1.6803 NaN 1 Median 1.4064 1.6803 NaN 1 0 Median NaN NaN NaN 0 0 Median 18853000 6629800 12223000 18853000 6629800 12223000 0 0 0 7045 1580 7212 18695 29296 29296 1 KGDEVDGVDEVAK ALKKQLPGVKSEGKRKGDEVDGVDEVAKKK KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK R K G A K K 1 0 0 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 3 0 0 13 1 1359.6518 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q96P95 A0A024R3T8 209 221 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 5.2034E-238 316.12 2 2 0.73269 0.85808 28.621 2 Median 0.73269 0.85808 28.621 2 0 Median NaN NaN NaN 0 0 Median 234170000 133910000 100270000 229160000 133910000 95250000 5016400 0 5016400 7046 139 7213 18696;18697;18698;18699 29297;29298;29299;29300 29298 4 KGDEYIINGQK GAGSDVAGIKTKAEKKGDEYIINGQKMWIT KAEKKGDEYIINGQKMWITNGGKANWYFLL K K G Q K M 0 0 1 1 0 1 1 2 0 2 0 2 0 0 0 0 0 0 1 0 0 0 11 1 1263.6459 B7Z9I1;B4DWX6;A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B4DVB1;A0A0S2Z3A5;B4DVE0 B7Z9I1 143 153 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 3.9372E-16 135.8 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12324000 0 12324000 12324000 0 12324000 0 0 0 7047 545 7214 18700 29301 29301 1 KGDGGGASGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR EQIAAEQKANPDGKKKGDGGGASGGGGGGG ENTTSEAGLPQGEARTRDDGDEEGLLTHSE K K G A R T 4 2 1 1 0 2 3 25 0 0 1 1 0 0 4 6 2 0 0 0 0 0 52 2 4265.8902 A8K4T9;Q53GL6 A8K4T9 208 259 RALY yes no 4 1.4678E-05 34.284 2 1 0.76756 0.85072 20.275 3 Median 0.76835 0.86029 1.5831 2 0 Median 0.60958 0.60585 NaN 1 0 Median 86682000 48289000 38393000 75204000 40357000 34846000 11479000 7932000 3546500 7048 741 7215 18701;18702;18703 29302;29303;29304;29305;29306;29307;29308;29309;29310;29311;29312;29313 29305 12 KGDIIQLQR HEELMLGDPCLKDLKKGDIIQLQRRGFFIC CLKDLKKGDIIQLQRRGFFICDQPYEPVSP K K G Q R R 0 1 0 1 0 2 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 1 1069.6244 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 666 674 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0045801 76.282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67982000 0 67982000 67982000 0 67982000 0 0 0 7049 1454 7216 18704 29314 29314 1 KGDIVDIK KHGVVPLATYMRIYKKGDIVDIKGMGTVQK TYMRIYKKGDIVDIKGMGTVQKGMPHKCYH K K G I K G 0 0 0 2 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 1 0 0 8 1 886.51238 Q6IAX2;P46778;Q59GK9;G3V1B3;M0R181 Q6IAX2 36 43 RPL21 60S ribosomal protein L21 yes no 2 0.0016342 121.35 2 2 1.0197 1.2828 27.552 4 Linear 0.98678 1.1611 0.6976 2 0 Median 0.84755 0.72063 1.2008 2 0 Median 2407100000 1238200000 1168900000 2210900000 1134300000 1076600000 196210000 103900000 92316000 7050 1571 7217 18705;18706;18707;18708 29315;29316;29317;29318;29319;29320;29321 29316 7 KGDLDTAAVK TAMKADASKKLLKKKKGDLDTAAVKVEFDE LLKKKKGDLDTAAVKVEFDEEFSGAPVEGA K K G V K V 2 0 0 2 0 0 0 1 0 0 1 2 0 0 0 0 1 0 0 1 0 0 10 1 1016.5502 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1234 1243 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 9.7255E-22 149.17 2 0.50612 0.59755 NaN 1 Median 0.50612 0.59755 NaN 1 0 Median NaN NaN NaN 0 0 Median 73525000 57357000 16168000 73525000 57357000 16168000 0 0 0 7051 1679 7218 18709;18710 29322;29323;29324 29324 3 KGEDVLGSVR PALSAALYYLVVQGKKGEDVLGSVRRALTH VVQGKKGEDVLGSVRRALTHIDHSLSRQNC K K G V R R 0 1 0 1 0 0 1 2 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 1 1058.572 A8K492;P56192;A0A024RBA2;F5H2V6 A8K492 109 118 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.00093959 84.882 1 3.2133 3.6759 NaN 1 Median 3.2133 3.6759 NaN 1 0 Median NaN NaN NaN 0 0 Median 25907000 6163600 19743000 25907000 6163600 19743000 0 0 0 7052 732 7219 18711 29325 29325 1 KGEFETGFEK GASQADLAVLVISARKGEFETGFEKGGQTR VISARKGEFETGFEKGGQTREHAMLAKTAG R K G E K G 0 0 0 0 0 0 3 2 0 0 0 2 0 2 0 0 1 0 0 0 0 0 10 1 1170.5557 H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170;B4DQM6;Q8IYD1 H3BR35 193 202 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B no no 2 0.018564 55.084 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2390400 0 2390400 0 0 0 2390400 0 2390400 7053 715;1899 7220 18712 29326 29326 1 KGEFQEVVR GFTPDVKVWEVCFGKKGEFQEVVRAFELKG EVCFGKKGEFQEVVRAFELKGHSAAVHSFA K K G V R A 0 1 0 0 0 1 2 1 0 0 0 1 0 1 0 0 0 0 0 2 0 0 9 1 1090.5771 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;B4DY59 E9PF19 227 235 TBL2 Transducin beta-like protein 2 yes no 2 0.0066878 70.389 1 0.87934 0.9897 NaN 1 Median 0.87934 0.9897 NaN 1 0 Median NaN NaN NaN 0 0 Median 13584000 6948500 6635400 13584000 6948500 6635400 0 0 0 7054 582 7221 18713 29327 29327 1 KGEITGEVR TSLRPFDLVIPFTIKKGEITGEVRMPSGKV IPFTIKKGEITGEVRMPSGKVAQPTITDNK K K G V R M 0 1 0 0 0 0 2 2 0 1 0 1 0 0 0 0 1 0 0 1 0 0 9 1 987.53491 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;H0Y5F3 P21333 1801 1809 FLNA;FLJ00119 Filamin-A yes no 2 0.0025898 83.998 2 1.4782 1.5924 NaN 1 Median 1.4782 1.5924 NaN 1 0 Median NaN NaN NaN 0 0 Median 14270000 4779100 9490800 14270000 4779100 9490800 0 0 0 7055 1504 7222 18714;18715 29328;29329;29330 29329 3 KGGEFDEFVNDDTDDDLPISK TKEKKRGGGGGRRSKKGGEFDEFVNDDTDD EFVNDDTDDDLPISKKKKRRKGSGSEQEGE K K G S K K 0 0 1 6 0 0 2 2 0 1 1 2 0 2 1 1 1 0 0 1 0 0 21 1 2355.039 A8K6X9;Q6PD62 A8K6X9 913 933 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 0.026725 25.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6582200 0 6582200 6582200 0 6582200 0 0 0 7056 765 7223 18716 29331 29331 1 KGGSWIQEINVAEK EPSFDWKNFEQKMLKKGGSWIQEINVAEKN KKGGSWIQEINVAEKNWYPRQKICYAKRKL K K G E K N 1 0 1 0 0 1 2 2 0 2 0 2 0 0 0 1 0 1 0 1 0 0 14 1 1557.8151 P78527 P78527 4023 4036 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0069898 21.237 1 0.28222 0.24995 NaN 1 Median NaN NaN NaN 0 0 Median 0.28222 0.24995 NaN 1 0 Median 2333800 1690600 643240 0 0 0 2333800 1690600 643240 7057 1665 7224 18717 29332 29332 1 KGHAVGDIPGVR FIEENDEVLVAGFGRKGHAVGDIPGVRFKV FGRKGHAVGDIPGVRFKVVKVANVSLLALY R K G V R F 1 1 0 1 0 0 0 3 1 1 0 1 0 0 1 0 0 0 0 2 0 0 12 1 1204.6677 A8K517;P62266;D6RD47 A8K517 108 119 RPS23 40S ribosomal protein S23 yes no 2;3;4 1.3882E-06 104.79 4 0.69265 0.78027 6.1326 3 Median 0.69265 0.78027 6.1326 3 0 Median NaN NaN NaN 0 0 Median 130000000 74861000 55143000 130000000 74861000 55143000 0 0 0 7058 744 7225 18718;18719;18720;18721 29333;29334;29335;29336 29336 4 KGIDYDFPSLILQK RFKKKERLLRKKLAKKGIDYDFPSLILQKT KKGIDYDFPSLILQKTESISKTNRQTSTKG K K G Q K T 0 0 0 2 0 1 0 1 0 2 2 2 0 1 1 1 0 0 1 0 0 0 14 1 1635.8872 Q9BYG3;C9J808;C9J6C5 Q9BYG3 179 192 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 3 0.0014299 43.316 2 1.7209 1.4684 1.3143 2 Median NaN NaN NaN 0 0 Median 1.7209 1.4684 1.3143 2 0 Median 13030000 3916000 9113700 0 0 0 13030000 3916000 9113700 7059 2019 7226 18722;18723 29337;29338;29339 29338 3 KGPDGYDPQFITK YSLLERLLTYNSLYKKGPDGYDPQFITKLL YKKGPDGYDPQFITKLLRNYRSHPTILDIP K K G T K L 0 0 0 2 0 1 0 2 0 1 0 2 0 1 2 0 1 0 1 0 0 0 13 1 1464.7249 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 653 665 MOV10 Putative helicase MOV-10 yes no 2 0.0287 43.68 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8049900 0 8049900 8049900 0 8049900 0 0 0 7060 1102 7227 18724 29340 29340 1 KGPEPVPLEFIPAQGLLGR LELTAYEIFERDLKKKGPEPVPLEFIPAQG PVPLEFIPAQGLLGRPGELCAQHFTLS___ K K G G R P 1 1 0 0 0 1 2 3 0 1 3 1 0 1 4 0 0 0 0 1 0 0 19 1 2017.136 Q9BVI4 Q9BVI4 486 504 NOC4L Nucleolar complex protein 4 homolog yes yes 3 7.5764E-06 56.121 2 2 0.84839 0.83605 16.955 4 Median 0.82034 0.93095 10.427 2 0 Median 0.879 0.73375 13.68 2 0 Median 60565000 33891000 26674000 47235000 25799000 21436000 13330000 8091700 5237900 7061 2007 7228 18725;18726;18727;18728 29341;29342;29343;29344;29345;29346 29341 6 KGPEPVPLEFIPAQGLLGRPGELCAQHFTLS LELTAYEIFERDLKKKGPEPVPLEFIPAQG LGRPGELCAQHFTLS_______________ K K G L S - 2 1 0 0 1 2 3 4 1 1 5 1 0 2 5 1 1 0 0 1 0 0 31 2 3357.7544 Q9BVI4 Q9BVI4 486 516 NOC4L Nucleolar complex protein 4 homolog yes yes 4 0.037338 14.817 1 0.76296 0.64524 NaN 1 Median NaN NaN NaN 0 0 Median 0.76296 0.64524 NaN 1 0 Median 10359000 5252600 5106600 0 0 0 10359000 5252600 5106600 7062 2007 7229 18729 29347 29347 1 KGPGLAVQSGDK KGKRINVELSTKGQKKGPGLAVQSGDKTKK GQKKGPGLAVQSGDKTKKPGAGDTAFPGTG K K G D K T 1 0 0 1 0 1 0 3 0 0 1 2 0 0 1 1 0 0 0 1 0 0 12 1 1155.6248 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 153 164 RBM14 RNA-binding protein 14 yes no 2 1.861E-17 138.75 2 2 1.0495 1.0537 44.172 4 Median 1.342 1.5705 10.078 2 0 Median 0.85883 0.73652 4.2813 2 0 Median 135720000 59869000 75855000 125020000 54473000 70550000 10700000 5395900 5304600 7063 571 7230 18730;18731;18732;18733 29348;29349;29350;29351;29352;29353 29348 6 KGPLTVAQK AVITLFNEPSAEDSKKGPLTVAQKKAQNIM SAEDSKKGPLTVAQKKAQNIMESFENPFRM K K G Q K K 1 0 0 0 0 1 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 9 1 940.57057 Q01780 Q01780 671 679 EXOSC10 Exosome component 10 yes yes 2 0.0029081 85.862 2 0.90252 1.0532 2.6558 2 Median 0.90252 1.0532 2.6558 2 0 Median NaN NaN NaN 0 0 Median 53380000 27954000 25427000 53380000 27954000 25427000 0 0 0 7064 1676 7231 18734;18735 29354;29355 29355 1 KGPQSLFNAPR LPKGISAGAVQTAGKKGPQSLFNAPRGKKR TAGKKGPQSLFNAPRGKKRPAPGSDEEEEE K K G P R G 1 1 1 0 0 1 0 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 11 1 1213.6568 P46087;F5H5X6;F5GWB7;F5H709 P46087 92 102 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2;3 8.9251E-09 115.82 5 1 1.1004 1.2927 14.383 6 Median 1.0948 1.2931 6.1187 5 0 Median 1.1199 0.94299 NaN 1 0 Median 357480000 169230000 188250000 349560000 165430000 184130000 7917300 3801000 4116300 7065 1570 7232 18736;18737;18738;18739;18740;18741 29356;29357;29358;29359;29360;29361;29362;29363 29359 7 KGQEADLEAGGEEVPEANGSAGK NHQENSRNQKPKKRKKGQEADLEAGGEEVP AGGEEVPEANGSAGKRSKKKKQRKDSASEE K K G G K R 4 0 1 1 0 1 5 5 0 0 1 2 0 0 1 1 0 0 0 1 0 0 23 1 2242.0349 Q9NX58 Q9NX58 225 247 LYAR Cell growth-regulating nucleolar protein yes yes 3 0.00019771 34.914 2 2 0.9995 0.99493 16.211 4 Median 0.78036 0.89664 1.2724 2 0 Median 1.3594 1.1683 9.2822 2 0 Median 33276000 16519000 16757000 23555000 12490000 11065000 9721600 4029000 5692500 7066 2079 7233 18742;18743;18744;18745 29364;29365;29366;29367;29368;29369 29365 6 KGQVIQF IKRCKHFELGGDKKRKGQVIQF________ ELGGDKKRKGQVIQF_______________ R K G Q F - 0 0 0 0 0 2 0 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 1 818.46504 B2R4V2;J3KQN4;Q969Q0;P83881;R4GN19 B2R4V2 100 106 RPL36A;RPL36AL 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 1;2 0.029368 71.359 2 2 1.349 1.1119 34.338 3 Median 0.61311 0.62815 NaN 1 0 Median 1.4028 1.1371 3.168 2 0 Median 80238000 16724000 63513000 59758000 8547300 51211000 20479000 8176700 12303000 7067 830 7234 18746;18747;18748;18749 29370;29371;29372;29373 29372 1 KGTVEGFEPADNK ITLKKYDGRTKPIPKKGTVEGFEPADNKCL PKKGTVEGFEPADNKCLLRATDGKKKISTV K K G N K C 1 0 1 1 0 0 2 2 0 0 0 2 0 1 1 0 1 0 0 1 0 0 13 1 1390.6729 P37108;H0YLA2 P37108 43 55 SRP14 Signal recognition particle 14 kDa protein yes no 2;3 0.00017533 92.19 1 4 0.77184 0.73568 10.129 4 Median 0.66892 0.77449 NaN 1 0 Median 0.80517 0.69883 10.699 3 0 Median 66523000 37973000 28550000 49975000 28423000 21552000 16548000 9550100 6997800 7068 1549 7235 18750;18751;18752;18753;18754 29374;29375;29376;29377;29378 29374 5 KIDASQTEFEK QQAVQSQGFINYCQKKIDASQTEFEKNVWS YCQKKIDASQTEFEKNVWSFLKVNFEDDSR K K I E K N 1 0 0 1 0 1 2 0 0 1 0 2 0 1 0 1 1 0 0 0 0 0 11 1 1294.6405 H7BXG7;A0A1S5UZ19;A0A024RDH6;A0A024RDD3;D6REX3;O94979;H0Y9K1;H0Y8V7;H0YAB3;D6RHZ5 H7BXG7 233 243 SEC31A;SEC31L1 Protein transport protein Sec31A yes no 2 0.0048944 65.695 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3070900 0 3070900 3070900 0 3070900 0 0 0 7069 384 7236 18755 29379 29379 1 KIDDPIDEEEEFEELK LVPASVKVLRRSNRKKIDDPIDEEEEFEEL IDDPIDEEEEFEELKGSEPHMRTRNQGRRT K K I L K G 0 0 0 3 0 0 6 0 0 2 1 2 0 1 1 0 0 0 0 0 0 0 16 1 1976.9102 Q8WWQ0;Q9NWP3 Q8WWQ0 1745 1760 PHIP PH-interacting protein yes no 2;3 3.372E-57 139.49 3 4 1.4386 1.2203 15.596 7 Median 0.84725 0.97693 10.995 3 0 Median 1.5271 1.3006 4.2512 4 0 Median 249970000 120720000 129240000 130400000 73326000 57072000 119570000 47398000 72169000 7070 1942 7237 18756;18757;18758;18759;18760;18761;18762 29380;29381;29382;29383;29384;29385;29386;29387;29388;29389;29390 29382 11 KIEDNNTLVFIVDVK YAIIKFPLTTESAMKKIEDNNTLVFIVDVK KIEDNNTLVFIVDVKANKHQIKQAVKKLYD K K I V K A 0 0 2 2 0 0 1 0 0 2 1 2 0 1 0 0 1 0 0 3 0 0 15 1 1745.9564 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 91 105 RPL23A 60S ribosomal protein L23a yes no 2;3 3.5511E-30 148.52 4 0.80709 0.68782 2.0261 4 Median NaN NaN NaN 0 0 Median 0.80709 0.68782 2.0261 4 0 Median 60421000 33044000 27377000 0 0 0 60421000 33044000 27377000 7071 796 7238 18763;18764;18765;18766 29391;29392;29393;29394;29395;29396 29393 6 KIEFPLPDEK ETLDPALIRPGRIDRKIEFPLPDEKTKKRI GRIDRKIEFPLPDEKTKKRIFQIHTSRMTL R K I E K T 0 0 0 1 0 0 2 0 0 1 1 2 0 1 2 0 0 0 0 0 0 0 10 1 1214.6547 Q53XL8;Q53HB3;P62191 Q53XL8 350 359 PSMC1 26S protease regulatory subunit 4 yes no 2 0.034021 47.302 1 1.7729 2.0176 NaN 1 Median 1.7729 2.0176 NaN 1 0 Median NaN NaN NaN 0 0 Median 8405000 3864700 4540400 8405000 3864700 4540400 0 0 0 7072 1634 7239 18767 29397 29397 0 KIEFSLPDLEGR DTLDPALMRPGRLDRKIEFSLPDLEGRTHI LDRKIEFSLPDLEGRTHIFKIHARSMSVER R K I G R T 0 1 0 1 0 0 2 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 12 1 1402.7456 A0A140VK70;P35998;Q75L23 A0A140VK70 340 351 PSMC2 26S protease regulatory subunit 7 yes no 3 0.0056107 47.915 2 1 2.5573 2.5905 30.102 2 Median 2.83 3.205 NaN 1 0 Median 2.3109 2.0939 NaN 1 0 Median 24466000 4610800 19855000 22633000 4131900 18501000 1833300 478920 1354400 7073 620 7240 18768;18769;18770 29398;29399;29400;29401 29400 4 KIEFVVVGPEAPLAAGIVGNLR SISDHTALAQFCKEKKIEFVVVGPEAPLAA GPEAPLAAGIVGNLRSAGVQCFGPTAEAAQ K K I L R S 3 1 1 0 0 0 2 3 0 2 2 1 0 1 2 0 0 0 0 4 0 0 22 1 2248.2943 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;C9JZG2;C9JKQ7 Q3B7A7 66 87 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 1.5017E-07 53.059 3 1 2.5628 2.8365 31.349 3 Median 2.5651 2.8391 0.13285 2 0 Median 1.908 1.6496 NaN 1 0 Median 30071000 9232500 20839000 15737000 3880600 11856000 14334000 5351900 8982200 7074 1507 7241 18771;18772;18773;18774 29402;29403;29404;29405;29406;29407;29408 29406 7 KIEHDVVMK QQQKLKKNLEVGIRKKIEHDVVMKASSSLP EVGIRKKIEHDVVMKASSSLPKKLALLKAP K K I M K A 0 0 0 1 0 0 1 0 1 1 0 2 1 0 0 0 0 0 0 2 0 0 9 1 1097.5903 Q9UNZ5;K7ESE5;A0A0A0MQS3 Q9UNZ5 60 68 C19orf53 Leydig cell tumor 10 kDa protein homolog yes no 2 0.0013461 80.688 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7481800 7481800 0 7481800 7481800 0 0 0 0 7075 2116 7242 18775 29409 29409 1941 1 KIEISQHAK ______________________________ ______________________________ K K I A K Y 1 0 0 0 0 1 1 0 1 2 0 2 0 0 0 1 0 0 0 0 0 0 9 1 1052.5978 C9J4Z3;P61513;M0R0A1;Q6P4E4;E9PEL3;M0R2L6;G5E9R3 C9J4Z3 4 12 RPL37A 60S ribosomal protein L37a yes no 2;3 1.0983E-24 204.91 4 4 0.80423 0.80967 16.314 8 Median 0.79223 0.92872 2.758 4 0 Median 0.81524 0.69285 3.2625 4 0 Median 643380000 348740000 294640000 503650000 273110000 230540000 139730000 75632000 64096000 7076 1129 7243 18776;18777;18778;18779;18780;18781;18782;18783 29410;29411;29412;29413;29414;29415;29416;29417;29418;29419;29420;29421;29422 29413 13 KIEPFYK AAGVGRFKTNYAVERKIEPFYKGGKAQLDQ KTNYAVERKIEPFYKGGKAQLDQTGQHLFC R K I Y K G 0 0 0 0 0 0 1 0 0 1 0 2 0 1 1 0 0 0 1 0 0 0 7 1 923.51165 Q12788;H3BN88 Q12788 20 26 TBL3 Transducin beta-like protein 3 yes no 2 0.053402 66.429 1 1.2144 1.0384 NaN 1 Median NaN NaN NaN 0 0 Median 1.2144 1.0384 NaN 1 0 Median 11638000 4977100 6660900 0 0 0 11638000 4977100 6660900 7077 1698 7244 18784 29423 29423 1 KIEQELTAAK DTEEMLSKKQEFLEKKIEQELTAAKKHGTK EFLEKKIEQELTAAKKHGTKNKRAALQALK K K I A K K 2 0 0 0 0 1 2 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 10 1 1129.6343 Q9H444 Q9H444 46 55 CHMP4B Charged multivesicular body protein 4b yes yes 2 9.5172E-06 108.47 1 1.5952 1.8543 NaN 1 Median 1.5952 1.8543 NaN 1 0 Median NaN NaN NaN 0 0 Median 11226000 4047500 7178000 11226000 4047500 7178000 0 0 0 7078 2030 7245 18785 29424 29424 1 KIEQVDKEDEITEK DPSGDSTLPTCSKKRKIEQVDKEDEITEKK RKIEQVDKEDEITEKKAKKAKIKVKVEEEE R K I E K K 0 0 0 2 0 1 4 0 0 2 0 3 0 0 0 0 1 0 0 1 0 0 14 2 1702.8625 Q9Y2X3;B3KN82 Q9Y2X3 444 457 NOP58 Nucleolar protein 58 yes no 2;3 1.4444E-09 114.01 2 2 0.85159 0.92915 22.729 4 Median 0.61754 0.7433 30.169 2 0 Median 0.9932 0.95589 2.6209 2 0 Median 50255000 25374000 24882000 40514000 20746000 19767000 9741700 4627400 5114400 7079 2129 7246 18786;18787;18788;18789 29425;29426;29427;29428;29429;29430 29426 6 KIEVPAQLK LFSPASEVPRKAKAKKIEVPAQLKELVSDL RKAKAKKIEVPAQLKELVSDLSSQFVISPP K K I L K E 1 0 0 0 0 1 1 0 0 1 1 2 0 0 1 0 0 0 0 1 0 0 9 1 1024.6281 Q8WYP5;B3KRD0 Q8WYP5 2133 2141 AHCTF1 Protein ELYS yes no 2 0.00030675 107.1 2 1 1.2089 1.4266 11.049 3 Median 1.1797 1.3804 4.6594 2 0 Median 1.9579 1.657 NaN 1 0 Median 230330000 104020000 126310000 215900000 99046000 116860000 14424000 4969900 9453900 7080 1945 7247 18790;18791;18792 29431;29432;29433;29434 29432 4 KIEVSLQPEVPPSK GFQNSEQSRRILRRRKIEVSLQPEVPPSKQ RKIEVSLQPEVPPSKQLLSTIMKDSEKHIE R K I S K Q 0 0 0 0 0 1 2 0 0 1 1 2 0 0 3 2 0 0 0 2 0 0 14 1 1549.8716 Q9H8H0;J3QR28 Q9H8H0 386 399 NOL11 Nucleolar protein 11 yes no 3 0.018209 23.138 1 1.3794 1.2083 NaN 1 Median NaN NaN NaN 0 0 Median 1.3794 1.2083 NaN 1 0 Median 2896800 1299700 1597100 0 0 0 2896800 1299700 1597100 7081 2042 7248 18793 29435;29436 29436 2 KIGFLGLGLMGSGIVSNLLK ADSTAVNGSITPTDKKIGFLGLGLMGSGIV GLGLMGSGIVSNLLKMGHTVTVWNRTAEKE K K I L K M 0 0 1 0 0 0 0 5 0 2 5 2 1 1 0 2 0 0 0 1 0 0 20 1 2016.1806 D3DUE6;K7EMM8;D3DUE7;Q49A26 D3DUE7 291 310 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 3 1.1231E-07 84.499 2 1.8494 2.14 6.5576 2 Median 1.8494 2.14 6.5576 2 0 Median NaN NaN NaN 0 0 Median 30017000 11298000 18720000 30017000 11298000 18720000 0 0 0 7082 1194;1193 7249 18794;18795 29437;29438;29439 29438 910 3 KINPSEDVGSK EFDMSAIPRKRGRPRKINPSEDVGSKAVKE GRPRKINPSEDVGSKAVKEERSPKKKEAPS R K I S K A 0 0 1 1 0 0 1 1 0 1 0 2 0 0 1 2 0 0 0 1 0 0 11 1 1172.6037 Q8WYP5;B3KVE5;B3KRD0 Q8WYP5 1979 1989 AHCTF1 Protein ELYS yes no 2 0.010922 54.259 1 1.9318 1.683 NaN 1 Median NaN NaN NaN 0 0 Median 1.9318 1.683 NaN 1 0 Median 3218400 1028600 2189700 0 0 0 3218400 1028600 2189700 7083 1945 7250 18796 29440 29440 1 KIPDPDSDDVSEVDAR PQAAQPPTLPVEEKKKIPDPDSDDVSEVDA IPDPDSDDVSEVDARHIIENAKQDVDDEYG K K I A R H 1 1 0 5 0 0 1 0 0 1 0 1 0 0 2 2 0 0 0 2 0 0 16 1 1756.8115 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6 A7E2E1 689 704 SMARCA4 Transcription activator BRG1 yes no 2;3 2.2737E-09 89.311 6 0.70856 0.84261 20.215 4 Median 0.70856 0.84261 20.215 4 0 Median NaN NaN NaN 0 0 Median 196890000 111590000 85302000 196890000 111590000 85302000 0 0 0 7084 695 7251 18797;18798;18799;18800;18801;18802 29441;29442;29443;29444;29445;29446;29447 29443 7 KIPDTVLEK GELFSKFYGELALKKKIPDTVLEKVYELLG ELALKKKIPDTVLEKVYELLGLLGEVHPSE K K I E K V 0 0 0 1 0 0 1 0 0 1 1 2 0 0 1 0 1 0 0 1 0 0 9 1 1041.607 P78527;B4DL41 P78527 165 173 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0094088 66.27 2 1 0.59769 0.69562 51.152 3 Plateau 0.58944 0.69081 0.98252 2 0 Median 0.33296 0.28485 NaN 1 0 Median 305920000 188860000 117060000 295440000 180820000 114620000 10473000 8034200 2439100 7085 1665 7252 18803;18804;18805 29448;29449;29450 29449 3 KIPNPDFFEDLEPFR PMIDNPSYQGIWKPRKIPNPDFFEDLEPFR KIPNPDFFEDLEPFRMTPFSAIGLELWSMT R K I F R M 0 1 1 2 0 0 2 0 0 1 1 1 0 3 3 0 0 0 0 0 0 0 15 1 1862.9203 P27824 P27824 401 415 CANX Calnexin yes yes 3 0.00014303 46.89 2 2 0.47247 0.40327 54.254 3 Median 0.85518 0.97813 NaN 1 0 Median 0.45177 0.38371 7.0319 2 0 Median 34409000 19378000 15030000 27875000 14517000 13358000 6533200 4861000 1672300 7086 1526 7253 18806;18807;18808;18809 29451;29452;29453;29454;29455 29452 5 KITAFVPNDGCLNFIEENDEVLVAGFGR AIRKCVRVQLIKNGKKITAFVPNDGCLNFI FIEENDEVLVAGFGRKGHAVGDIPGVRFKV K K I G R K 2 1 3 2 1 0 3 3 0 2 2 1 0 3 1 0 1 0 0 3 0 0 28 1 3123.5335 A8K517;P62266;D6RD47 A8K517 80 107 RPS23 40S ribosomal protein S23 yes no 3 4.4591E-20 85.814 2 2 0.9602 0.96228 29.076 4 Median 0.67307 0.74833 0.51303 2 0 Median 1.3972 1.2382 0.60317 2 0 Median 503200000 203460000 299740000 33396000 18102000 15294000 469810000 185360000 284450000 7087 744 7254 18810;18811;18812;18813 29456;29457;29458;29459;29460;29461;29462 29462 7 KITDGLHALQEASNK VEDSKTLAAKEKEVKKITDGLHALQEASNK KITDGLHALQEASNKDAEALAAAQQHFNAV K K I N K D 2 0 1 1 0 1 1 1 1 1 2 2 0 0 0 1 1 0 0 0 0 0 15 1 1623.858 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 354 368 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 0.0012706 37.438 1 2 1.8901 1.6257 25.052 3 Median 0.93317 1.0676 NaN 1 0 Median 1.9269 1.6467 1.8208 2 0 Median 30237000 13746000 16491000 17701000 9520600 8180600 12535000 4225600 8309900 7088 69 7255 18814;18815;18816 29463;29464;29465;29466;29467 29465 4 KITEAIGIISK EMLVQYLQDAYSFSRKITEAIGIISKMMYE SFSRKITEAIGIISKMMYENTTTVVQEVIE R K I S K M 1 0 0 0 0 0 1 1 0 4 0 2 0 0 0 1 1 0 0 0 0 0 11 1 1171.7176 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 633 643 NCAPD2 Condensin complex subunit 1 yes no 2 0.0016103 71.153 3 1.6853 1.4339 13.344 3 Median NaN NaN NaN 0 0 Median 1.6853 1.4339 13.344 3 0 Median 26287000 10014000 16273000 0 0 0 26287000 10014000 16273000 7089 908 7256 18817;18818;18819 29468;29469;29470;29471 29470 3 KITIADCGQLE EAMERFGSRNGKTSKKITIADCGQLE____ KTSKKITIADCGQLE_______________ K K I L E - 1 0 0 1 1 1 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1246.6227 V9HWF5;A8K486;P62937;B4DM82 V9HWF5 155 165 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 2 0.021401 63.216 2 1 2.481 2.25 96.389 2 Median 4.375 4.4482 NaN 1 0 Median 1.4069 1.1381 NaN 1 0 Median 22400000 5330800 17069000 18046000 3934100 14112000 4353700 1396700 2957000 7090 731 7257 18820;18821;18822 29472;29473;29474;29475 29474 4 KITVVPSAK ______________________________ ______________________________ K K I A K D 1 0 0 0 0 0 0 0 0 1 0 2 0 0 1 1 1 0 0 2 0 0 9 1 941.59097 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4 Q8N4P8 6 14 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 4.0969E-05 114.39 2 2 1.4701 1.4522 4.8216 4 Median 1.2943 1.5156 2.4547 2 0 Median 1.6482 1.4012 1.4648 2 0 Median 284710000 120760000 163950000 235630000 102760000 132870000 49086000 18005000 31080000 7091 1183 7258 18823;18824;18825;18826 29476;29477;29478;29479;29480;29481 29478 6 KKEELLK ______________________________ KARDLRGKKKEELLKQLDDLKVELSQLRVA K K K L K Q 0 0 0 0 0 0 2 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 7 2 886.54877 P42766;F2Z388;A0A024R866 P42766 13 19 RPL35 60S ribosomal protein L35 yes no 2 1.19E-05 151.56 1 0.54136 0.65161 NaN 1 Median 0.54136 0.65161 NaN 1 0 Median NaN NaN NaN 0 0 Median 80371000 51082000 29289000 80371000 51082000 29289000 0 0 0 7092 1567 7259 18827 29482 29482 1 KKPNATRPVTPPR ETLMCSFQILKPAEKKKPNATRPVTPPRGM EKKKPNATRPVTPPRGMITKQAKK______ K K K P R G 1 2 1 0 0 0 0 0 0 0 0 2 0 0 4 0 2 0 0 1 0 0 13 3 1460.8576 A0A024RBP2;P36873;F8W0W8;B4DNE3 A0A024RBP2 302 314 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 4 0.0017419 45.257 1 1.7267 2.1486 NaN 1 Median 1.7267 2.1486 NaN 1 0 Median NaN NaN NaN 0 0 Median 4600800 1529100 3071600 4600800 1529100 3071600 0 0 0 7093 343 7260 18828 29483;29484;29485 29484 3 KKPNPVEEEPSR ASGDEGIKVLKQRAKKKPNPVEEEPSRRRP RAKKKPNPVEEEPSRRRPRAPKEKAQPLED K K K S R R 0 1 1 0 0 0 3 0 0 0 0 2 0 0 3 1 0 0 0 1 0 0 12 2 1408.731 P46013 P46013 2652 2663 MKI67 Antigen KI-67 yes yes 2;3 4.3229E-08 115.34 3 1 1.6751 2.0783 19.171 4 Median 1.6577 1.9787 7.1425 3 0 Median 2.9853 2.9063 NaN 1 0 Median 298030000 113330000 184700000 273490000 106880000 166610000 24538000 6446400 18092000 7094 1569 7261 18829;18830;18831;18832 29486;29487;29488;29489;29490 29488 5 KLDAEDVIGSR GEGKGTKAFKQPAKRKLDAEDVIGSRRQPR PAKRKLDAEDVIGSRRQPRAPKEKAQPLED R K L S R R 1 1 0 2 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 11 1 1201.6303 P46013 P46013 2892 2902 MKI67 Antigen KI-67 yes yes 2;3 5.3681E-08 120.32 3 2 1.6819 2.0004 14.588 5 Median 1.6077 1.9137 5.5438 3 0 Median 2.8409 2.4553 0.9315 2 0 Median 937370000 341100000 596270000 876090000 325560000 550530000 61285000 15539000 45746000 7095 1569 7262 18833;18834;18835;18836;18837 29491;29492;29493;29494;29495;29496;29497;29498 29495 8 KLDAGNQLALIEELHK VVLEESWDALNAITKKLDAGNQLALIEELH LDAGNQLALIEELHKEIRLIGNESKGEHVP K K L H K E 2 0 1 1 0 1 2 1 1 1 4 2 0 0 0 0 0 0 0 0 0 0 16 1 1790.989 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2222 2237 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.0037321 31.233 1 0.8976 0.77506 NaN 1 Median NaN NaN NaN 0 0 Median 0.8976 0.77506 NaN 1 0 Median 4761800 1857500 2904300 0 0 0 4761800 1857500 2904300 7096 1205 7263 18838 29499 29499 1 KLDEAVAEAHLGK THPDKYPVGVHFLPKKLDEAVAEAHLGKLN PKKLDEAVAEAHLGKLNVKLTKLTEKQAQY K K L G K L 3 0 0 1 0 0 2 1 1 0 2 2 0 0 0 0 0 0 0 1 0 0 13 1 1379.7409 P23526;Q1RMG2 P23526 389 401 AHCY Adenosylhomocysteinase yes no 3 0.041525 22.985 1 0.93046 1.0597 NaN 1 Median 0.93046 1.0597 NaN 1 0 Median NaN NaN NaN 0 0 Median 9509700 4906500 4603200 9509700 4906500 4603200 0 0 0 7097 1512 7264 18839 29500 29500 0 KLDEEALLK HGKGSGKMKTERRMKKLDEEALLKKMSSSD TERRMKKLDEEALLKKMSSSDTPLGTVALL K K L L K K 1 0 0 1 0 0 2 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 9 1 1057.6019 O43290;B4DDH9 O43290 749 757 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 5.5319E-05 104.01 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10537000 10537000 0 10537000 10537000 0 0 0 0 7098 1384 7265 18840 29501 29501 1 KLDELYGTWR GHVGRFCIWTESAFRKLDELYGTWRKAASL ESAFRKLDELYGTWRKAASLKSNYNLPMHK R K L W R K 0 1 0 1 0 0 1 1 0 0 2 1 0 0 0 0 1 1 1 0 0 0 10 1 1279.6561 P36578;Q59GY2;B4DMJ6;H3BM89;Q53G74;B4DMJ2 P36578 259 268 RPL4 60S ribosomal protein L4 yes no 2 0.00042867 92.239 2 2 0.80782 0.81181 5.7933 4 Median 0.66902 0.79703 8.9332 2 0 Median 0.93833 0.81181 4.1844 2 0 Median 276290000 162430000 113860000 206870000 126530000 80336000 69421000 35902000 33520000 7099 1548 7266 18841;18842;18843;18844 29502;29503;29504;29505;29506;29507;29508 29505 7 KLDGIPDCDISPVQIR YLFEVMQAVEQVILKKLDGIPDCDISPVQI LDGIPDCDISPVQIRKCTEKFLCFMKGHFD K K L I R K 0 1 0 3 1 1 0 1 0 3 1 1 0 0 2 1 0 0 0 1 0 0 16 1 1824.9404 A8K1M4;Q9H081;I3L4K6 A8K1M4 46 61 MIS12 Protein MIS12 homolog yes no 3 0.038106 10.376 1 0.84623 0.70129 NaN 1 Median NaN NaN NaN 0 0 Median 0.84623 0.70129 NaN 1 0 Median 3853900 2195900 1658000 0 0 0 3853900 2195900 1658000 7100 704 7267 18845 29509 29509 1 KLDPGSEETQTLVR LSPDWQVDYESYTWRKLDPGSEETQTLVRE RKLDPGSEETQTLVREYFSWEGAFQHVGKA R K L V R E 0 1 0 1 0 1 2 1 0 0 2 1 0 0 1 1 2 0 0 1 0 0 14 1 1571.8155 Q53YD7;P26641;B4DUP0 Q53YD7 401 414 EEF1G Elongation factor 1-gamma yes no 3 0.0022847 37.555 2 1 2.7748 3.1844 54.326 3 Median 2.975 3.347 7.0408 2 0 Median 1.5911 1.3113 NaN 1 0 Median 47834000 10812000 37022000 42576000 8548600 34028000 5257500 2263600 2993900 7101 1522 7268 18846;18847;18848 29510;29511;29512;29513 29511 4 KLDSLTTSFGFPVGAATLVDEVGVDVAK MSEVIRILQEGVDPKKLDSLTTSFGFPVGA GAATLVDEVGVDVAKHVAEDLGKVFGERFG K K L A K H 3 0 0 3 0 0 1 3 0 0 3 2 0 2 1 2 3 0 0 5 0 0 28 1 2835.4906 E9KL44;P40939;B4DRH6;B4DDZ5;H0YFD6 E9KL44 570 597 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 3 2.9693E-35 120.52 2 1.0336 1.2102 1.367 2 Median 1.0336 1.2102 1.367 2 0 Median NaN NaN NaN 0 0 Median 204770000 98115000 106660000 204770000 98115000 106660000 0 0 0 7102 1228 7269 18849;18850 29514;29515;29516 29515 3 KLDYGQHVVAGTPGR CHACIGGTNVGEDIRKLDYGQHVVAGTPGR KLDYGQHVVAGTPGRVFDMIRRRSLRTRAI R K L G R V 1 1 0 1 0 1 0 3 1 0 1 1 0 0 1 0 1 0 1 2 0 0 15 1 1596.8372 A0A024R8W0;P38919 A0A024R8W0 152 166 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 3 0.00016041 53.168 1 2.338 2.5316 NaN 1 Median 2.338 2.5316 NaN 1 0 Median NaN NaN NaN 0 0 Median 10264000 3795100 6468900 10264000 3795100 6468900 0 0 0 7103 261 7270 18851 29517 29517 1 KLEAAEDIAYQLSR ANSLATAGDGLIELRKLEAAEDIAYQLSRS RKLEAAEDIAYQLSRSRNITYLPAGQSVLL R K L S R S 3 1 0 1 0 1 2 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 14 1 1605.8362 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0 Q6PUJ7 240 253 HEL-S-54e;PHB Prohibitin yes no 2;3 4.9928E-05 67.605 1 4 2.3819 2.0031 19.742 5 Median 1.29 1.4889 NaN 1 0 Median 2.5051 2.1127 15.581 4 0 Median 64728000 22099000 42628000 30090000 12347000 17743000 34638000 9752700 24885000 7104 730 7271 18852;18853;18854;18855;18856 29518;29519;29520;29521;29522;29523;29524;29525 29519 8 KLEAGIR PHASIMFCTVGVLLRKLEAGIRGISHVIVD CTVGVLLRKLEAGIRGISHVIVDEIHERDI R K L I R G 1 1 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 1 785.47594 Q08211;Q58F26;Q6PJK6 Q08211 497 503 DHX9 ATP-dependent RNA helicase A yes no 2 2.0838E-06 154.11 2 1.2136 1.452 2.2109 2 Median 1.2136 1.452 2.2109 2 0 Median NaN NaN NaN 0 0 Median 401720000 164560000 237160000 401720000 164560000 237160000 0 0 0 7105 1691 7272 18857;18858 29526;29527 29526 2 KLEAQETLNEEDK KITELLNKTDNRPLKKLEAQETLNEEDKAK LKKLEAQETLNEEDKAKIAKSKKKMRQKVQ K K L D K A 1 0 1 1 0 1 4 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 13 1 1545.7522 J3QK86;J3KPG5;F8VU39;Q9UIF9;H0YII3 J3QK86 663 675 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2;3 3.9618E-142 272.92 4 1 0.98492 1.1754 30.048 5 Median 0.94607 1.1124 11.51 4 0 Median 2.4114 2.0441 NaN 1 0 Median 139240000 67062000 72179000 132860000 65204000 67654000 6382900 1858500 4524300 7106 1260 7273 18859;18860;18861;18862;18863 29528;29529;29530;29531;29532;29533;29534;29535 29531 8 KLEEALMADILSR EDIRKQEERVQQVRKKLEEALMADILSRAA RKKLEEALMADILSRAADTEEMDIEMDSGD K K L S R A 2 1 0 1 0 0 2 0 0 1 3 1 1 0 0 1 0 0 0 0 0 0 13 1 1487.8018 Q9UBB5;O60535;Q69YZ5 Q9UBB5 382 394 MBD2;NY-CO-41;DKFZp586O0821 Methyl-CpG-binding domain protein 2 yes no 2 0.030645 46.704 1 1.9493 1.779 NaN 1 Median NaN NaN NaN 0 0 Median 1.9493 1.779 NaN 1 0 Median 1614000 718180 895810 0 0 0 1614000 718180 895810 7107 2096 7274 18864 29536 29536 1 KLEEEEAEVK DSRLDELCNDIATKKKLEEEEAEVKRKATD IATKKKLEEEEAEVKRKATDAAYQARQAVK K K L V K R 1 0 0 0 0 0 5 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 10 1 1202.603 H7C2P4;B4DEG9;H7C128;H7C179;B4DN43;B5MCW3;H7C127;B2R5V7;A8K1N6;Q9H0E9 H7C2P4 38 47 BRD8 Bromodomain-containing protein 8 yes no 2 0.0030005 78.488 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4225300 4225300 0 4225300 4225300 0 0 0 0 7108 705 7275 18865 29537 29537 1 KLEEEQIILEDQNCK QKLQLEKVTTEAKLKKLEEEQIILEDQNCK KLEEEQIILEDQNCKLAKEKKLLEDRIAEF K K L C K L 0 0 1 1 1 2 4 0 0 2 2 2 0 0 0 0 0 0 0 0 0 0 15 1 1887.9248 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;Q99529 A0A024R1N1 975 989 MYH9 Myosin-9 yes no 3 1.0654E-07 104 3 2 2.0518 2.066 9.0875 4 Median 1.6793 1.963 7.6026 2 0 Median 2.5731 2.1881 8.4948 2 0 Median 78653000 29434000 49219000 58460000 23446000 35014000 20193000 5987900 14205000 7109 81 7276 18866;18867;18868;18869;18870 29538;29539;29540;29541;29542;29543;29544;29545 29539 8 KLEEIPK DNEQSDLVHRISGDKKLEEIPKYKDLLKLF VHRISGDKKLEEIPKYKDLLKLFTTMELMR K K L P K Y 0 0 0 0 0 0 2 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 7 1 855.50657 A0A0S2Z489;O00232;A0A0S2Z476 A0A0S2Z489 295 301 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 0.040537 90.308 1 2.2416 2.591 NaN 1 Median 2.2416 2.591 NaN 1 0 Median NaN NaN NaN 0 0 Median 32998000 12049000 20949000 32998000 12049000 20949000 0 0 0 7110 558 7277 18871 29546 29546 1 KLEELEK EGHNIADYIDPAIMKKLEELEKEEELRTAA YIDPAIMKKLEELEKEEELRTAAGEYDSVS K K L E K E 0 0 0 0 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 7 1 887.4964 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 447 453 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.00028217 125.31 2 2 1.5818 1.3456 1.0608 3 Median 1.1406 1.3456 NaN 1 0 Median 1.5976 1.3564 1.3484 2 0 Median 475150000 120320000 354830000 399040000 92588000 306460000 76106000 27733000 48373000 7111 1183 7278 18872;18873;18874;18875 29547;29548;29549;29550;29551 29548 5 KLEELELDEQQK TSEGASEANLVDLQKKLEELELDEQQKKRL LQKKLEELELDEQQKKRLEAFLTQKAKVGE K K L Q K K 0 0 0 1 0 2 4 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 1 1500.7672 P36507;A0A1B0GUL7 P36507 40 51 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes no 2;3 0.0017856 74.46 3 2.7466 3.2604 14.951 2 Median 2.7466 3.2604 14.951 2 0 Median NaN NaN NaN 0 0 Median 47140000 10092000 37048000 47140000 10092000 37048000 0 0 0 7112 1547 7279 18876;18877;18878 29552;29553;29554 29554 2 KLEGQYLYLK K L L K 0 0 0 0 0 1 1 1 0 0 3 2 0 0 0 0 0 0 2 0 0 0 10 1 1253.702 REV__B4DKV5 yes no 3 0.0033968 41.54 2 1 0.92062 1.0853 8.6384 3 Plateau 0.91487 1.0737 1.5267 2 0 Median 1.0846 0.92554 NaN 1 0 Median 1474100000 748280000 725840000 1457000000 740320000 716710000 17095000 7960800 9133700 + 7113 2165 7280 18879;18880;18881 29555;29556;29557 29555 3 KLELSDNIISGGLEVLAEK ELSSLARLPSLNKLRKLELSDNIISGGLEV SDNIISGGLEVLAEKCPNLTYLNLSGNKIK R K L E K C 1 0 1 1 0 0 3 2 0 2 4 2 0 0 0 2 0 0 0 1 0 0 19 1 2027.115 Q53F20;Q9BTT0;Q5TB19;B4E0D5;E9PLC4 Q53F20 68 86 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 3 5.9583E-06 42.639 2 0.93198 0.79598 6.1918 2 Median NaN NaN NaN 0 0 Median 0.93198 0.79598 6.1918 2 0 Median 11957000 6400100 5557400 0 0 0 11957000 6400100 5557400 7114 1784 7281 18882;18883 29558;29559;29560;29561 29560 4 KLEQCNTELK AFEKYQTLSLKQLFRKLEQCNTELKKYSHV KQLFRKLEQCNTELKKYSHVNKKALDQFVN R K L L K K 0 0 1 0 1 1 2 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 10 1 1261.6336 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 968 977 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.013096 56.916 2 1.3242 1.1574 16.423 2 Median NaN NaN NaN 0 0 Median 1.3242 1.1574 16.423 2 0 Median 4579000 2034900 2544100 0 0 0 4579000 2034900 2544100 7115 803 7282 18884;18885 29562;29563 29563 2 KLERPPETPTVDPTVK EEGRPGKKLKKVKLRKLERPPETPTVDPTV LERPPETPTVDPTVKYERQPEYLDATGGTL R K L V K Y 0 1 0 1 0 0 2 0 0 0 1 2 0 0 4 0 3 0 0 2 0 0 16 2 1805.9887 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 689 704 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.021943 20.368 1 1.832 1.7835 NaN 1 Median NaN NaN NaN 0 0 Median 1.832 1.7835 NaN 1 0 Median 8835300 3042400 5792900 0 0 0 8835300 3042400 5792900 7116 515 7283 18886 29564 29564 1 KLESILAQDQDLK KEIKINPEKLIDVQKKLESILAQDQDLKER QKKLESILAQDQDLKERAQRCFVSYVRSVY K K L L K E 1 0 0 2 0 2 1 0 0 1 3 2 0 0 0 1 0 0 0 0 0 0 13 1 1499.8195 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 453 465 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2;3 0.0098204 41.339 1 3 0.94136 0.83195 39.59 2 Median NaN NaN NaN 0 0 Median 0.94136 0.83195 39.59 2 0 Median 10123000 7916100 2207100 4549400 4549400 0 5573900 3366700 2207100 7117 1708 7284 18887;18888;18889;18890 29565;29566;29567;29568;29569;29570 29567 6 KLETAVNLAWTAGNSNTR DGTEFGGSIYQKVNKKLETAVNLAWTAGNS TAVNLAWTAGNSNTRFGIAAKYQIDPDACF K K L T R F 3 1 3 0 0 0 1 1 0 0 2 1 0 0 0 1 3 1 0 1 0 0 18 1 1945.0017 A0A1L1UHR1;P21796;B3KTS5 A0A1L1UHR1 201 218 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2;3 5.529E-13 111.01 3 2 1.8183 1.8386 11.398 4 Median 1.4259 1.6986 2.3072 2 0 Median 2.3797 2.0458 6.206 2 0 Median 245610000 102250000 143360000 205330000 89232000 116100000 40274000 13017000 27257000 7118 639 7285 18891;18892;18893;18894;18895 29571;29572;29573;29574;29575;29576;29577;29578 29577 8 KLETEETVPETDVETK MEKFTDADKETEIVKKLETEETVPETDVET LETEETVPETDVETKKPEVASWVHFDNLKG K K L T K K 0 0 0 1 0 0 5 0 0 0 1 2 0 0 1 0 4 0 0 2 0 0 16 1 1846.9048 B2R5U7;Q03701 B2R5U7 659 674 CEBPZ CCAAT/enhancer-binding protein zeta no no 2;3 1.8398E-33 184.99 2 1 0.91121 0.99 15.764 3 Median 0.79018 0.92373 21.563 2 0 Median 1.1698 0.99 NaN 1 0 Median 101690000 50300000 51393000 87371000 43708000 43664000 14322000 6592800 7729400 7119 836;1683 7286 18896;18897;18898 29579;29580;29581;29582;29583 29582 5 KLETNPDIK QQQKLDRQKELEKKRKLETNPDIKPSNVEP ELEKKRKLETNPDIKPSNVEPMEKEFGLCK R K L I K P 0 0 1 1 0 0 1 0 0 1 1 2 0 0 1 0 1 0 0 0 0 0 9 1 1056.5815 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5;C9JYH9 A0A024R2Z6 79 87 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0012795 94.692 1 0.638 0.75942 NaN 1 Median 0.638 0.75942 NaN 1 0 Median NaN NaN NaN 0 0 Median 22678000 11912000 10766000 22678000 11912000 10766000 0 0 0 7120 125 7287 18899 29584 29584 1 KLETNPDIKPSNVEPMEK QQQKLDRQKELEKKRKLETNPDIKPSNVEP TNPDIKPSNVEPMEKEFGLCKTENKAKSGK R K L E K E 0 0 2 1 0 0 3 0 0 1 1 3 1 0 3 1 1 0 0 1 0 0 18 2 2068.0511 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5;C9JYH9 A0A024R2Z6 79 96 GNL3 Guanine nucleotide-binding protein-like 3 yes no 3 9.6572E-07 84.493 2 0.99986 1.186 4.0764 2 Median 0.99986 1.186 4.0764 2 0 Median NaN NaN NaN 0 0 Median 59412000 28771000 30641000 59412000 28771000 30641000 0 0 0 7121 125 7288 18900;18901 29585;29586;29587 29587 109 3 KLEVNEAELLR KLGKAHATTSNTVIKKLEVNEAELLRRRNF TVIKKLEVNEAELLRRRNFKVMIYQDEVKL K K L L R R 1 1 1 0 0 0 3 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 11 1 1312.7351 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 110 120 PTRF Polymerase I and transcript release factor yes no 2;3 7.1866E-05 73.632 4 4 1.0376 1.1792 24.018 6 Linear 1.0407 1.2071 0.36778 2 0 Median 0.93025 0.78676 3.2829 4 0 Linear 104890000 40871000 64023000 79452000 27946000 51506000 25441000 12924000 12517000 7122 1017 7289 18902;18903;18904;18905;18906;18907;18908;18909 29588;29589;29590;29591;29592;29593;29594;29595;29596;29597 29588 9 KLGAGEGGEASVSPEK GDQPAARTPRSKKKKKLGAGEGGEASVSPE LGAGEGGEASVSPEKTSTTSKGKAKRDKAS K K L E K T 2 0 0 0 0 0 3 4 0 0 1 2 0 0 1 2 0 0 0 1 0 0 16 1 1514.7577 E7ETY2;B4DRA2;Q9UFD4;Q13428 Q13428 1366 1381 TCOF1;DKFZp434G1035 Treacle protein no no 2;3 0.0049334 45.257 1 2 0.43805 0.50325 51.782 3 Plateau 0.43805 0.50325 NaN 1 0 Median 0.24791 0.2161 24.474 2 0 Median 9936500 7429400 2507100 4366600 2996200 1370300 5570000 4433200 1136800 7123 1712;1225 7290 18910;18911;18912 29598;29599;29600 29600 3 KLGALTAEEIALK DVASIKEKVKKAKNKKLGALTAEEIALKME NKKLGALTAEEIALKMEADEKKKKKKK___ K K L L K M 3 0 0 0 0 0 2 1 0 1 3 2 0 0 0 0 1 0 0 0 0 0 13 1 1355.8024 Q13601 Q13601 357 369 KRR1 KRR1 small subunit processome component homolog yes yes 3 0.046957 11.262 1 1.196 1.069 NaN 1 Median NaN NaN NaN 0 0 Median 1.196 1.069 NaN 1 0 Median 1824500 821650 1002800 0 0 0 1824500 821650 1002800 7124 1717 7291 18913 29601 29601 1 KLGNNCVFAPADVTSEK VLLDLPNSGGEAQAKKLGNNCVFAPADVTS GNNCVFAPADVTSEKDVQTALALAKGKFGR K K L E K D 2 0 2 1 1 0 1 1 0 0 1 2 0 1 1 1 1 0 0 2 0 0 17 1 1848.904 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 53 69 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 3 0.041442 8.6445 1 1.5464 1.3833 NaN 1 Median NaN NaN NaN 0 0 Median 1.5464 1.3833 NaN 1 0 Median 1919700 655310 1264400 0 0 0 1919700 655310 1264400 7125 555 7292 18914 29602 29602 1 KLNEQVTQEQPLK QGFVQVTEICDAYTKKLNEQVTQEQPLKDL TKKLNEQVTQEQPLKDLLHLPELFSPGMLV K K L L K D 0 0 1 0 0 3 2 0 0 0 2 2 0 0 1 0 1 0 0 1 0 0 13 1 1553.8413 Q14690;B4DH82;B4DES7 Q14690 122 134 PDCD11 Protein RRP5 homolog yes no 2;3 1.6339E-05 100.38 2 2 1.2999 1.5172 18.722 4 Linear 1.2516 1.4392 18.944 2 0 Median 1.2999 1.1161 6.8192 2 0 Median 31319000 14549000 16770000 23370000 11418000 11951000 7949100 3130400 4818700 7126 1741 7293 18915;18916;18917;18918 29603;29604;29605;29606;29607;29608;29609 29607 7 KLPAIALDLLR VNVLKMAASSVKKDRKLPAIALDLLRLALK KKDRKLPAIALDLLRLALKEDKFPRFWKEV R K L L R L 2 1 0 1 0 0 0 0 0 1 4 1 0 0 1 0 0 0 0 0 0 0 11 1 1221.7809 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 263 273 MYBBP1A Myb-binding protein 1A yes no 2;3 0.0035463 62.303 3 2 0.9894 0.96531 7.5491 4 Median 0.91638 1.0017 2.1775 2 0 Median 1.0625 0.89898 7.017 2 0 Median 40853000 21430000 19423000 24758000 13252000 11506000 16095000 8177700 7917200 7127 1997 7294 18919;18920;18921;18922;18923 29610;29611;29612;29613;29614;29615;29616;29617 29613 8 KLPEELGR HDAKEIFGRIQDKHKKLPEELGRDQNTVET RIQDKHKKLPEELGRDQNTVETLQRMHTTF K K L G R D 0 1 0 0 0 0 2 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 1 940.53418 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1741 1748 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.014655 77.282 1 1.612 1.8898 NaN 1 Median 1.612 1.8898 NaN 1 0 Median NaN NaN NaN 0 0 Median 56500000 20437000 36063000 56500000 20437000 36063000 0 0 0 7128 415 7295 18924 29618 29618 1 KLPEEVVK DKRMWQSMCPLRQFRKLPEEVVKKIEKKNF CPLRQFRKLPEEVVKKIEKKNFPFERLYDL R K L V K K 0 0 0 0 0 0 2 0 0 0 1 2 0 0 1 0 0 0 0 2 0 0 8 1 940.55933 O75643;A4FU77 O75643 1134 1141 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.004784 98.629 1 1.0063 1.1877 NaN 1 Median 1.0063 1.1877 NaN 1 0 Median NaN NaN NaN 0 0 Median 85614000 43143000 42471000 85614000 43143000 42471000 0 0 0 7129 1411 7296 18925 29619 29619 1 KLPGFPTQDDEVMMLTER YDVELFQRIEHLIGKKLPGFPTQDDEVMML GFPTQDDEVMMLTERVAEAQRFARMELREH K K L E R V 0 1 0 2 0 1 2 1 0 0 2 1 2 1 2 0 2 0 0 1 0 0 18 1 2106.0126 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 378 395 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 3 1.2624E-05 52.612 1 1.1643 1.3307 NaN 1 Median 1.1643 1.3307 NaN 1 0 Median NaN NaN NaN 0 0 Median 25678000 11688000 13990000 25678000 11688000 13990000 0 0 0 7130 313 7297 18926 29620 29620 228;229 1 KLPNIK ASNLKTFREWDFDLKKLPNIKMRKICANDA FREWDFDLKKLPNIKMRKICANDAIPKTCK K K L I K M 0 0 1 0 0 0 0 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 6 1 711.46431 H0Y9X1;Q96EY4 H0Y9X1 191 196 TMA16 Translation machinery-associated protein 16 yes no 2 0.041016 130.84 1 0.66296 0.76003 NaN 1 Median 0.66296 0.76003 NaN 1 0 Median NaN NaN NaN 0 0 Median 20677000 12272000 8405200 20677000 12272000 8405200 0 0 0 7131 1288 7298 18927 29621 29621 1 KLQDLAGGIFPEDEIPEK STPSQNRKRLYKVIRKLQDLAGGIFPEDEI DLAGGIFPEDEIPEKACRRLLEGRRQKKTK R K L E K A 1 0 0 2 0 1 3 2 0 2 2 2 0 1 2 0 0 0 0 0 0 0 18 1 1998.031 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 335 352 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 3 0.00024468 37.672 2 1.0456 0.88867 0.028608 2 Median NaN NaN NaN 0 0 Median 1.0456 0.88867 0.028608 2 0 Median 40214000 19464000 20749000 0 0 0 40214000 19464000 20749000 7132 1618 7299 18928;18929 29622;29623;29624;29625 29623 4 KLQEVDSLWK ETSVGYAIFKVLNEKKLQEVDSLWKEFETP VLNEKKLQEVDSLWKEFETPEKANKIVKLK K K L W K E 0 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 1 0 1 0 0 10 1 1244.6765 Q9Y2X3;B4DUY3;F8WED0 Q9Y2X3 21 30 NOP58 Nucleolar protein 58 yes no 2 6.7971E-05 99.283 2 0.95623 0.8137 1.8686 2 Median NaN NaN NaN 0 0 Median 0.95623 0.8137 1.8686 2 0 Median 51178000 25940000 25238000 0 0 0 51178000 25940000 25238000 7133 2129 7300 18930;18931 29626;29627;29628;29629 29626 4 KLQLSLADFR RGSATNYITRNKARKKLQLSLADFRRLCIL NKARKKLQLSLADFRRLCILKGIYPHEPKH K K L F R R 1 1 0 1 0 1 0 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 10 1 1189.6819 B5MCF9;B2RDF2;O00541 B5MCF9 26 35 PES1 Pescadillo homolog yes no 2 0.00013159 98.04 1 2 1.2285 1.0394 15.27 3 Median 0.73267 0.80161 NaN 1 0 Median 1.2337 1.0442 0.64602 2 0 Median 36570000 16273000 20297000 16865000 6995200 9870000 19705000 9277800 10427000 7134 886 7301 18932;18933;18934 29630;29631;29632 29632 3 KLSEEEILENPDLFLTSEATDYGR EALHLIDEMDLNGDKKLSEEEILENPDLFL NPDLFLTSEATDYGRQLHDDYFYHDEL___ K K L G R Q 1 1 1 2 0 0 5 1 0 1 4 1 0 1 1 2 2 0 1 0 0 0 24 1 2768.3392 Q14257;A8MXP8 Q14257 282 305 RCN2 Reticulocalbin-2 yes no 3 3.0913E-13 78.236 2 1.5601 1.3401 6.7821 2 Median NaN NaN NaN 0 0 Median 1.5601 1.3401 6.7821 2 0 Median 34221000 13780000 20441000 0 0 0 34221000 13780000 20441000 7135 1730 7302 18935;18936 29633;29634;29635;29636;29637 29636 5 KLSGLNAFDIAEELVK PQKAVDQPRQLFWEKKLSGLNAFDIAEELV LSGLNAFDIAEELVKTMDLPKGLQGVGPGC K K L V K T 2 0 1 1 0 0 2 1 0 1 3 2 0 1 0 1 0 0 0 1 0 0 16 1 1745.9564 O95983;B3KMA8;K7EIE8;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983 142 157 MBD3 Methyl-CpG-binding domain protein 3 yes no 3 9.5059E-05 51.535 2 2.1433 1.8582 NaN 1 Median NaN NaN NaN 0 0 Median 2.1433 1.8582 NaN 1 0 Median 8996400 1084500 7911900 0 0 0 8996400 1084500 7911900 7136 1432 7303 18937;18938 29638;29639 29638 2 KLSLLNGGLQEEELSTSLK VIWLDSKQIRQEEMKKLSLLNGGLQEEELS LNGGLQEEELSTSLKRSVYIESRIGTSTSF K K L L K R 0 0 1 0 0 1 3 2 0 0 6 2 0 0 0 3 1 0 0 0 0 0 19 1 2058.1209 O95235 O95235 224 242 KIF20A Kinesin-like protein KIF20A yes yes 3 0.044587 16.506 1 1.6829 1.4478 NaN 1 Median NaN NaN NaN 0 0 Median 1.6829 1.4478 NaN 1 0 Median 3482400 1590200 1892200 0 0 0 3482400 1590200 1892200 7137 1421 7304 18939 29640 29640 0 KLTQTSGETTHTDKVPGGEDK PLEKRDVQKELSALKKLTQTSGETTHTDKV GETTHTDKVPGGEDKSINAFRETAKQKLDP K K L D K S 0 0 0 2 0 1 2 3 1 0 1 3 0 0 1 1 5 0 0 1 0 0 21 2 2228.0921 P46013 P46013 1409 1429 MKI67 Antigen KI-67 yes yes 4 0.00019355 43.12 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2393300 0 2393300 0 0 0 2393300 0 2393300 7138 1569 7305 18940 29641 29641 1 KLTVNPGTK YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP DEEAVKKLTVNPGTKSKLPKPVQDLIKMIF K K L T K S 0 0 1 0 0 0 0 1 0 0 1 2 0 0 1 0 2 0 0 1 0 0 9 1 956.56548 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 654 662 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 3.1809E-22 166.66 3 0.58967 0.68174 5.5724 2 Median 0.58967 0.68174 5.5724 2 0 Median NaN NaN NaN 0 0 Median 176580000 112480000 64099000 176580000 112480000 64099000 0 0 0 7139 139 7306 18941;18942;18943 29642;29643;29644;29645 29642 3 KLVGSVNLFSDENVPR ELFLLAQQKVPSKLKKLVGSVNLFSDENVP LVGSVNLFSDENVPRLVNVLKMAASSVKKD K K L P R L 0 1 2 1 0 0 1 1 0 0 2 1 0 1 1 2 0 0 0 3 0 0 16 1 1772.9421 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 231 246 MYBBP1A Myb-binding protein 1A yes no 3 0.011787 13.959 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3251300 972740 2278600 0 0 0 3251300 972740 2278600 7140 1997 7307 18944 29646 29646 1 KLVLILNK RCPQVEEAIVQSGQKKLVLILNKSDLVPKE IVQSGQKKLVLILNKSDLVPKENLESWLNY K K L N K S 0 0 1 0 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 1 0 0 8 1 939.64809 A0A024R2Z6;Q9BVP2 A0A024R2Z6 160 167 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.033466 58.782 2 1.1671 0.99861 2.8888 2 Median NaN NaN NaN 0 0 Median 1.1671 0.99861 2.8888 2 0 Median 11526000 5246000 6280000 0 0 0 11526000 5246000 6280000 7141 125 7308 18945;18946 29647;29648 29648 2 KLVWVPSDK NFINNPLAQADWAAKKLVWVPSDKSGFEPA ADWAAKKLVWVPSDKSGFEPASLKEEVGEE K K L D K S 0 0 0 1 0 0 0 0 0 0 1 2 0 0 1 1 0 1 0 2 0 0 9 1 1070.6124 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;Q5BKV1;B1AH99 A0A024R1N1 30 38 MYH9 Myosin-9 yes no 2 0.043689 47.603 1 2.7102 2.3333 NaN 1 Median NaN NaN NaN 0 0 Median 2.7102 2.3333 NaN 1 0 Median 3373200 795470 2577700 0 0 0 3373200 795470 2577700 7142 81 7309 18947 29649 29649 1 KLYDIDVAK VDVKANKHQIKQAVKKLYDIDVAKVNTLIR IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV K K L A K V 1 0 0 2 0 0 0 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 9 1 1063.5914 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 117 125 RPL23A 60S ribosomal protein L23a yes no 2 0.0025963 83.948 2 2 0.85598 0.73866 17.723 4 Median 0.69323 0.80451 29.484 2 0 Median 0.86882 0.73866 0.30791 2 0 Median 109170000 65102000 44067000 35761000 24886000 10875000 73408000 40216000 33192000 7143 796 7310 18948;18949;18950;18951 29650;29651;29652;29653 29651 4 KMEDSVGCLETAEEVK KQIATLHAQVADMKKKMEDSVGCLETAEEV MEDSVGCLETAEEVKRKLQKDLEGLSQRHE K K M V K R 1 0 0 1 1 0 4 1 0 0 1 2 1 0 0 1 1 0 0 2 0 0 16 1 1823.8281 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1372 1387 MYH9 Myosin-9 yes no 3 3.4593E-05 79.393 1 2.2531 2.5852 NaN 1 Median 2.2531 2.5852 NaN 1 0 Median NaN NaN NaN 0 0 Median 21685000 6111600 15574000 21685000 6111600 15574000 0 0 0 7144 81 7311 18952 29654 29654 61 1 KMTEIQTPENTPR VATFIGLDKMAVWAKKMTEIQTPENTPRLF AKKMTEIQTPENTPRLFDLVKVKDEKIRQA K K M P R L 0 1 1 0 0 1 2 0 0 1 0 1 1 0 2 0 3 0 0 0 0 0 13 1 1543.7664 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 680 692 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 0.00034847 88.338 3 2 1.2791 1.4184 20.572 5 Median 1.185 1.306 5.8446 3 0 Median 2.2325 1.8848 12.608 2 0 Median 50905000 22441000 28464000 44578000 20439000 24139000 6327400 2002400 4325000 7145 2070 7312;7313 18953;18954;18955;18956;18957 29655;29656;29657;29658;29659;29660;29661 29656 1902 7 KNDMDEPPSGDFGGDEEK QLELHCQVMFRNYQRKNDMDEPPSGDFGGD MDEPPSGDFGGDEEKSRKRKNKDPKFAEME R K N E K S 0 0 1 4 0 0 3 3 0 0 0 2 1 1 2 1 0 0 0 0 0 0 18 1 1965.7898 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 570 587 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 1.7367E-07 78.78 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7208900 7208900 0 7208900 7208900 0 0 0 0 7146 515 7314 18958 29662 29662 377 1 KNELLQK LQSNKRTLTQIKEKKKNELLQKAVITPDFE LTQIKEKKKNELLQKAVITPDFEKNHCVPP K K N Q K A 0 0 1 0 0 1 1 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 7 1 871.51272 Q5QJE6 Q5QJE6 600 606 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.0010101 141.83 1 0.90538 1.0688 NaN 1 Median 0.90538 1.0688 NaN 1 0 Median NaN NaN NaN 0 0 Median 64666000 34593000 30073000 64666000 34593000 30073000 0 0 0 7147 1813 7315 18959 29663 29663 1 KNGPLEVAGAAVSAGHGLPAK KGGKEFVEAVLELRKKNGPLEVAGAAVSAG VAGAAVSAGHGLPAKFVIHCNSPVWGADKC K K N A K F 5 0 1 0 0 0 1 4 1 0 2 2 0 0 2 1 0 0 0 2 0 0 21 1 1943.0589 O75367;Q59FH0;B4DJC3 O75367 251 271 H2AFY Core histone macro-H2A.1;Histone H2A yes no 3;4 3.4628E-09 81.574 4 0.938 0.80024 29.025 4 Median NaN NaN NaN 0 0 Median 0.938 0.80024 29.025 4 0 Median 90654000 43381000 47273000 0 0 0 90654000 43381000 47273000 7148 1401 7316 18960;18961;18962;18963 29664;29665;29666;29667;29668;29669;29670 29664 7 KNPASLPLTQAALK SDGKKQEGPATQVSKKNPASLPLTQAALKV KKNPASLPLTQAALKVLAQKASEAQPPVAR K K N L K V 3 0 1 0 0 1 0 0 0 0 3 2 0 0 2 1 1 0 0 0 0 0 14 1 1450.8508 Q13428;Q59FZ2 Q13428 1065 1078 TCOF1 Treacle protein yes no 3 0.016045 16.529 1 1.676 1.4458 NaN 1 Median NaN NaN NaN 0 0 Median 1.676 1.4458 NaN 1 0 Median 3085900 1125100 1960700 0 0 0 3085900 1125100 1960700 7149 1712 7317 18964 29671 29671 1 KNPPSGDLLNVYELFEK YKKPLYGISHKIMEKKNPPSGDLLNVYELF PPSGDLLNVYELFEKANASNSPSSLRLLNE K K N E K A 0 0 2 1 0 0 2 1 0 0 3 2 0 1 2 1 0 0 1 1 0 0 17 1 1962.0098 Q5T5X7 Q5T5X7 142 158 BEND3 BEN domain-containing protein 3 yes yes 3 0.0053708 16.487 1 1.031 0.91877 NaN 1 Median NaN NaN NaN 0 0 Median 1.031 0.91877 NaN 1 0 Median 1628000 930260 697790 0 0 0 1628000 930260 697790 7150 1822 7318 18965 29672 29672 1 KNPSSPLYTTLGVITK PELKATFCLPILGVKKNPSSPLYTTLGVIT NPSSPLYTTLGVITKGTVIEVNVSELGLVT K K N T K G 0 0 1 0 0 0 0 1 0 1 2 2 0 0 2 2 3 0 1 1 0 0 16 1 1717.9614 Q5J7U2;O95478 Q5J7U2 201 216 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2;3 8.1399E-05 54.073 1 3 1.2219 1.0551 10.355 4 Median 0.93768 1.07 NaN 1 0 Median 1.2263 1.0403 12.43 3 0 Median 38532000 17905000 20627000 12667000 7056200 5611100 25865000 10849000 15016000 7151 1427 7319 18966;18967;18968;18969 29673;29674;29675;29676;29677;29678;29679 29676 7 KNQALNIAWQK DKSKILTTIEDLDQKKNQALNIAWQKVNKD LDQKKNQALNIAWQKVNKDFGSIFSTLLPG K K N Q K V 2 0 2 0 0 2 0 0 0 1 1 2 0 0 0 0 0 1 0 0 0 0 11 1 1312.7252 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 1026 1036 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0070464 58.433 2 1.9544 1.712 1.5967 2 Median NaN NaN NaN 0 0 Median 1.9544 1.712 1.5967 2 0 Median 5068300 1878200 3190100 0 0 0 5068300 1878200 3190100 7152 69 7320 18970;18971 29680;29681 29680 1 KNYEDEDSLK AEINNIIKIVGLQYKKNYEDEDSLKTLRYG GLQYKKNYEDEDSLKTLRYGKIMIMTDQDQ K K N L K T 0 0 1 2 0 0 2 0 0 0 1 2 0 0 0 1 0 0 1 0 0 0 10 1 1239.5619 P11388 P11388 520 529 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0011267 83.081 1 1.4297 1.2197 NaN 1 Median NaN NaN NaN 0 0 Median 1.4297 1.2197 NaN 1 0 Median 18039000 9183300 8856000 0 0 0 18039000 9183300 8856000 7153 1471 7321 18972 29682 29682 1 KPAEEGNDSEEVPEASGPQNDGK ______________________________ SEEVPEASGPQNDGKELC____________ K K P G K E 2 0 2 2 0 1 5 3 0 0 0 2 0 0 3 2 0 0 0 1 0 0 23 1 2383.0412 Q8IZH0;Q8IZG9;Q8IZG8;Q8IZG7;Q8IZG6;Q8IZG5;Q8WWZ9;Q9Y444;Q9NZK4;O75101;R9QTR3;A4PIW0;A4PIV9;Q16385 Q8IZH0 14 36 SS18/SSX2 fusion;SSX2;SSX-HSTT;SYT-SSX2 Protein SSX2 yes no 3 0.0010421 25.823 1 1.7637 2.0182 NaN 1 Median 1.7637 2.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median 5806400 1574800 4231500 5806400 1574800 4231500 0 0 0 7154 673 7322 18973 29683 29683 1 KPALQSSVVATSK RESRQESDPEDDDVKKPALQSSVVATSKER VKKPALQSSVVATSKERTRRDLIQDQNMDE K K P S K E 2 0 0 0 0 1 0 0 0 0 1 2 0 0 1 3 1 0 0 2 0 0 13 1 1314.7507 Q9H307;A8K964 Q9H307 109 121 PNN Pinin yes no 2 2.4003E-18 138.24 2 1.3705 1.6113 1.2441 2 Median 1.3705 1.6113 1.2441 2 0 Median NaN NaN NaN 0 0 Median 67634000 28535000 39100000 67634000 28535000 39100000 0 0 0 7155 2028 7323 18974;18975 29684;29685;29686;29687 29686 4 KPALVSTVEGGQDPK VLCLSQSEGRVLLCRKPALVSTVEGGQDPK KPALVSTVEGGQDPKNFSEIHPGMLLIGFV R K P P K N 1 0 0 1 0 1 1 2 0 0 1 2 0 0 2 1 1 0 0 2 0 0 15 1 1524.8148 Q14690;B4DH82;B4DES7 Q14690 707 721 PDCD11 Protein RRP5 homolog yes no 2;3 4.1001E-07 107.69 3 3 1.3029 1.2833 9.3716 6 Median 1.2713 1.4912 8.564 3 0 Plateau 1.43 1.2211 5.6641 3 0 Median 179330000 78144000 101190000 154960000 67717000 87238000 24377000 10427000 13951000 7156 1741 7324 18976;18977;18978;18979;18980;18981 29688;29689;29690;29691;29692;29693;29694;29695;29696 29691 9 KPAPPPAPPQATK EPAPPPGKAGEKSVKKPAPPPAPPQATKTT VKKPAPPPAPPQATKTTAPVPEPTKPGDPR K K P T K T 3 0 0 0 0 1 0 0 0 0 0 2 0 0 6 0 1 0 0 0 0 0 13 1 1298.7347 E7ERS3;B4DTK7;Q86VM9;H3BRN6 E7ERS3 663 675 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 2 0.00017418 92.247 2 0.83653 0.96808 5.5561 2 Median 0.83653 0.96808 5.5561 2 0 Median NaN NaN NaN 0 0 Median 24263000 12267000 11996000 24263000 12267000 11996000 0 0 0 7157 1033 7325 18982;18983 29697;29698;29699;29700 29699 4 KPASGPGAVVRPPK KKKRFWKSKAREVSKKPASGPGAVVRPPKA KKPASGPGAVVRPPKAPEDFSQNWKALQEW K K P P K A 2 1 0 0 0 0 0 2 0 0 0 2 0 0 4 1 0 0 0 2 0 0 14 2 1359.7987 Q9GZR2;A0A0C4DG31 Q9GZR2 48 61 REXO4 RNA exonuclease 4 yes no 3 0.01724 44.44 2 0.75722 0.90382 NaN 1 Median 0.75722 0.90382 NaN 1 0 Median NaN NaN NaN 0 0 Median 19474000 14735000 4738400 19474000 14735000 4738400 0 0 0 7158 2021 7326 18984;18985 29701;29702 29701 1 KPATPAEDDEDDDIDLFGSDNEEEDK TQHVSPMRQVEPPAKKPATPAEDDEDDDID DDIDLFGSDNEEEDKEAAQLREERLRQYAE K K P D K E 2 0 1 8 0 0 5 1 0 1 1 2 0 1 2 1 1 0 0 0 0 0 26 1 2908.1894 D3DWK1;B2RAR6;E9PRY8;P29692;E9PK01;Q9BW34;A0A087X1X7;Q71RH4;Q9H7G6;E9PQ49;E9PI39;E9PQZ1;H0YE72;E9PL71 D3DWK1 510 535 EEF1D Elongation factor 1-delta yes no 3 5.625E-07 53.705 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12416000 0 12416000 12416000 0 12416000 0 0 0 7159 875 7327 18986;18987 29703;29704;29705;29706 29706 4 KPATSYVR GKGVVVVIKRRSGQRKPATSYVRTTINKNA KRRSGQRKPATSYVRTTINKNARATLSSIR R K P V R T 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 8 1 920.50797 P46779;H0YKD8 P46779 72 79 RPL28 60S ribosomal protein L28 yes no 2 0.00011151 137.42 1 0.86794 1.056 NaN 1 Median 0.86794 1.056 NaN 1 0 Median NaN NaN NaN 0 0 Median 507750000 267970000 239780000 507750000 267970000 239780000 0 0 0 7160 1572 7328 18988 29707;29708 29707 2 KPEEEEEEELEETAQEK EEISSDSESESLAPRKPEEEEEEELEETAQ EEEEEEELEETAQEKKLRLAKLYLEQLRQQ R K P E K K 1 0 0 0 0 1 10 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 17 1 2074.9066 O43818 O43818 62 78 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2;3 1.1096E-44 174.62 4 3 0.88567 0.89131 7.3327 7 Median 0.81561 0.95625 6.5883 4 0 Median 1.0175 0.86248 1.078 3 0 Median 678180000 372230000 305960000 551650000 307960000 243690000 126540000 64271000 62268000 7161 1389 7329 18989;18990;18991;18992;18993;18994;18995 29709;29710;29711;29712;29713;29714;29715;29716;29717;29718;29719;29720;29721;29722 29714 14 KPESEGYLQEEK KKTETAAHSLPQQTKKPESEGYLQEEKQKC QTKKPESEGYLQEEKQKCYNDLLASAKKDL K K P E K Q 0 0 0 0 0 1 4 1 0 0 1 2 0 0 1 1 0 0 1 0 0 0 12 1 1435.6831 H0Y432;Q53EZ4 H0Y432 62 73 CEP55 Centrosomal protein of 55 kDa yes no 2 1.25E-05 109.24 1 2.1135 2.3901 NaN 1 Median 2.1135 2.3901 NaN 1 0 Median NaN NaN NaN 0 0 Median 7101600 2135400 4966100 7101600 2135400 4966100 0 0 0 7162 1280 7330 18996 29723 29723 1 KPFGAILNLVPLAESVVK GKTVIVAALDGTFQRKPFGAILNLVPLAES GAILNLVPLAESVVKLTAVCMECFQEAAYT R K P V K L 2 0 1 0 0 0 1 1 0 1 3 2 0 1 2 1 0 0 0 3 0 0 18 1 1894.1292 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3;K7ES52;K7ERJ1 B5BUF9 131 148 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2;3 2.0395E-63 177.88 4 1.9919 2.324 11.591 4 Median 1.9919 2.324 11.591 4 0 Median NaN NaN NaN 0 0 Median 314100000 107680000 206420000 314100000 107680000 206420000 0 0 0 7163 252 7331 18997;18998;18999;19000 29724;29725;29726;29727;29728;29729;29730 29729 7 KPFPLVK ______________________________ ______________________________ R K P V K P 0 0 0 0 0 0 0 0 0 0 1 2 0 1 2 0 0 0 0 1 0 0 7 1 827.52691 Q9UIG0 Q9UIG0 8 14 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.051185 58.194 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80930000 0 80930000 80930000 0 80930000 0 0 0 7164 2103 7332 19001 29731 29731 1 KPFPLVKPLPGEEPLFTIPHTQEAFR ______________________________ EEPLFTIPHTQEAFRTREEYEARLERYSER R K P F R T 1 1 0 0 0 1 3 1 1 1 3 2 0 3 6 0 2 0 0 1 0 0 26 2 2987.6273 Q9UIG0 Q9UIG0 8 33 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 4 6.5457E-10 63.138 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10442000 0 10442000 0 0 0 10442000 0 10442000 7165 2103 7333 19002 29732 29732 1 KPFSQHVR YPTEDVPRKLLSHGKKPFSQHVRKLRASIT KLLSHGKKPFSQHVRKLRASITPGTILIIL K K P V R K 0 1 0 0 0 1 0 0 1 0 0 1 0 1 1 1 0 0 0 1 0 0 8 1 997.54575 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3;F8VZ45;U3KQR5;F8VR69 Q8TBK5 131 138 RPL6 60S ribosomal protein L6 yes no 3 0.00059202 92.439 1 0.94371 1.1032 NaN 1 Median 0.94371 1.1032 NaN 1 0 Median NaN NaN NaN 0 0 Median 50063000 21507000 28557000 50063000 21507000 28557000 0 0 0 7166 342 7334 19003 29733;29734 29733 2 KPGDLSDELR LYYEGKEFETRLKEKKPGDLSDELRISLGM RLKEKKPGDLSDELRISLGMPVGPNAHKVP K K P L R I 0 1 0 2 0 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 10 1 1128.5775 Q13435;Q7Z3K9;E9PPJ0;H0YEX5 Q13435 605 614 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 2 0.0090979 69.672 1 1.3313 1.5058 NaN 1 Median 1.3313 1.5058 NaN 1 0 Median NaN NaN NaN 0 0 Median 15833000 6627700 9205700 15833000 6627700 9205700 0 0 0 7167 1713 7335 19004 29735 29735 1 KPGGFDISLFYR DLRDTGIFLDLMHLKKPGGFDISLFYRDII HLKKPGGFDISLFYRDIISIAEDEDLRVHF K K P Y R D 0 1 0 1 0 0 0 2 0 1 1 1 0 2 1 1 0 0 1 0 0 0 12 1 1398.7296 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 207 218 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 2.6497E-06 90.653 4 3 0.35301 0.4167 31.167 7 Median 0.37527 0.44589 4.1806 4 0 Median 0.29837 0.25331 7.8626 3 0 Median 480660000 354760000 125900000 400400000 291950000 108450000 80263000 62810000 17453000 7168 82 7336 19005;19006;19007;19008;19009;19010;19011 29736;29737;29738;29739;29740;29741;29742;29743;29744;29745;29746;29747;29748;29749;29750;29751;29752;29753 29743 18 KPGSVVAAAAAEAK KAEADPQAIPKKRGRKPGSVVAAAAAEAKK RKPGSVVAAAAAEAKKKAVKESSIRSVQET R K P A K K 6 0 0 0 0 0 1 1 0 0 0 2 0 0 1 1 0 0 0 2 0 0 14 1 1268.7089 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;A0A075BPP5 A0A140VKC4 283 296 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.0017695 79.089 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5197100 5197100 0 5197100 5197100 0 0 0 0 7169 623 7337 19012;19013 29754;29755 29754 2 KPIDFVLNK YLGKITASLEIRAIKKPIDFVLNKVAKRGP EIRAIKKPIDFVLNKVAKRGPSRDEAKHSD K K P N K V 0 0 1 1 0 0 0 0 0 1 1 2 0 1 1 0 0 0 0 1 0 0 9 1 1072.6281 Q2TB10;B7Z4V7 Q2TB10 563 571 ZNF800 Zinc finger protein 800 yes no 2 1.3017E-05 129.63 1 1.2795 1.4806 NaN 1 Median 1.2795 1.4806 NaN 1 0 Median NaN NaN NaN 0 0 Median 43428000 21117000 22311000 43428000 21117000 22311000 0 0 0 7170 1777 7338 19014 29756;29757 29756 2 KPIFDNFRPPPLTPEDVGFASGFSASGTAASAR QYFSSAKYAKEGLIRKPIFDNFRPPPLTPE FASGFSASGTAASARLFSPLHSGTRFDMHK R K P A R L 5 2 1 2 0 0 1 3 0 1 1 1 0 4 5 4 2 0 0 1 0 0 33 2 3406.6946 Q03164;E9PR05 Q03164 645 677 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 4 0.0055604 22.773 1 2.6396 2.4662 NaN 1 Median NaN NaN NaN 0 0 Median 2.6396 2.4662 NaN 1 0 Median 11752000 3756400 7995400 0 0 0 11752000 3756400 7995400 7171 1680 7339 19015 29758;29759 29759 2 KPIPLENPK EQRKLRQAVKDAVSKKPIPLENPKEKRPGK KDAVSKKPIPLENPKEKRPGKRIEREEEEE K K P P K E 0 0 1 0 0 0 1 0 0 1 1 2 0 0 3 0 0 0 0 0 0 0 9 1 1034.6124 A8K905;Q8WTT2 A8K905 60 68 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.0032952 78.516 1 1.0945 1.2691 NaN 1 Median 1.0945 1.2691 NaN 1 0 Median NaN NaN NaN 0 0 Median 71898000 34629000 37269000 71898000 34629000 37269000 0 0 0 7172 780 7340 19016 29760;29761 29761 2 KPIPTWAR DLNSDDSTDDEAHPRKPIPTWARGTPLSQA DDEAHPRKPIPTWARGTPLSQAIIHQYYHP R K P A R G 1 1 0 0 0 0 0 0 0 1 0 1 0 0 2 0 1 1 0 0 0 0 8 1 967.56034 Q9NQS7 Q9NQS7 840 847 INCENP Inner centromere protein yes yes 2 0.021082 67.277 2 0.91321 1.0879 3.0266 2 Median 0.91321 1.0879 3.0266 2 0 Median NaN NaN NaN 0 0 Median 203360000 105830000 97530000 203360000 105830000 97530000 0 0 0 7173 2059 7341 19017;19018 29762;29763;29764 29762 3 KPITEIQDSK DSFFLDLSCEKSNPKKPITEIQDSKDSSLL KSNPKKPITEIQDSKDSSLLESDMKRKGKL K K P S K D 0 0 0 1 0 1 1 0 0 2 0 2 0 0 1 1 1 0 0 0 0 0 10 1 1157.6292 B4DLM8;O15381;B4DQJ4;A0JLP9;E9PH71;C9JP83;C9J6P7 B4DLM8 199 208 NVL Nuclear valosin-containing protein-like yes no 2 0.005196 66.056 1 1.3259 1.5153 NaN 1 Median 1.3259 1.5153 NaN 1 0 Median NaN NaN NaN 0 0 Median 6333200 2872500 3460700 6333200 2872500 3460700 0 0 0 7174 997 7342 19019 29765 29765 1 KPITTGGVTYR PCYEKQHAMQCVQCKKPITTGGVTYREQPW VQCKKPITTGGVTYREQPWHKECFVCTACR K K P Y R E 0 1 0 0 0 0 0 2 0 1 0 1 0 0 1 0 3 0 1 1 0 0 11 1 1191.6612 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q53T40;Q2TSB7 I0CE67 157 167 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 2;3 0.00045013 89.827 2 2.1388 2.4784 14.973 2 Median 2.1388 2.4784 14.973 2 0 Median NaN NaN NaN 0 0 Median 69770000 23191000 46579000 69770000 23191000 46579000 0 0 0 7175 478 7343 19020;19021 29766;29767 29766 1 KPLFHGDSEIDQLFR DIWSIGTIFAELATKKPLFHGDSEIDQLFR KPLFHGDSEIDQLFRIFRALGTPNNEVWPE K K P F R I 0 1 0 2 0 1 1 1 1 1 2 1 0 2 1 1 0 0 0 0 0 0 15 1 1800.9159 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;A0A024QZJ8 A0A024QZP7 201 215 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 3 0.0081012 26.49 1 1.0047 0.83059 NaN 1 Median NaN NaN NaN 0 0 Median 1.0047 0.83059 NaN 1 0 Median 4020000 1994900 2025100 0 0 0 4020000 1994900 2025100 7176 25 7344 19022 29768 29768 1 KPLLESGTLGTK VDARMYMDRRCVYYRKPLLESGTLGTKGNV YYRKPLLESGTLGTKGNVQVVIPFLTESYS R K P T K G 0 0 0 0 0 0 1 2 0 0 3 2 0 0 1 1 2 0 0 0 0 0 12 1 1242.7184 A0A024R1A3;P22314;B4DDE4;B4DL67 A0A024R1A3 593 604 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.01343 48.115 1 2.4221 2.8817 NaN 1 Median 2.4221 2.8817 NaN 1 0 Median NaN NaN NaN 0 0 Median 17451000 5432500 12018000 17451000 5432500 12018000 0 0 0 7177 74 7345 19023 29769 29769 1 KPLPDHVSIVEPK KIMLPWDPTGKIGPKKPLPDHVSIVEPKDE PKKPLPDHVSIVEPKDEILPTTPISEQKGG K K P P K D 0 0 0 1 0 0 1 0 1 1 1 2 0 0 3 1 0 0 0 2 0 0 13 1 1457.8242 P23396;Q53G83;E9PL09;E9PPU1;H0YEU2;Q9NQS8;E9PSF4 P23396 202 214 RPS3 40S ribosomal protein S3 yes no 3 3.0367E-19 117.08 2 2 1.139 1.3423 20.373 4 Linear 1.1307 1.3271 1.0637 2 0 Median 1.0983 0.9335 2.4869 2 0 Median 872530000 421710000 450820000 833150000 403630000 429520000 39386000 18081000 21305000 7178 1511 7346 19024;19025;19026;19027 29770;29771;29772;29773;29774;29775;29776;29777 29770 8 KPLTPYFR PYKGKKLKKHPDFPKKPLTPYFRFFMEKRA KHPDFPKKPLTPYFRFFMEKRAKYAKLHPE K K P F R F 0 1 0 0 0 0 0 0 0 0 1 1 0 1 2 0 1 0 1 0 0 0 8 1 1020.5757 E9PKP7;P17480;A8K962;B4DNQ1;Q05BZ1;Q9BQR2;E9PMM2 E9PKP7 114 121 UBTF Nucleolar transcription factor 1 yes no 2;3 4.797E-05 153.04 5 2 0.67069 0.79358 20.806 6 Median 0.61497 0.73175 10.39 4 0 Median 1.255 1.0539 3.7557 2 0 Median 656780000 387880000 268900000 648600000 384270000 264330000 8180200 3606600 4573600 7179 1244 7347 19028;19029;19030;19031;19032;19033;19034 29778;29779;29780;29781;29782;29783;29784;29785;29786;29787 29783 10 KPLTSNCTIQIATPGK GQVHLFEHILNGYCKKPLTSNCTIQIATPG PLTSNCTIQIATPGKGKKSTPKPIPILAAG K K P G K G 1 0 1 0 1 1 0 1 0 2 1 2 0 0 2 1 3 0 0 0 0 0 16 1 1727.924 Q15061;C9IZK7 Q15061 309 324 WDR43 WD repeat-containing protein 43 yes no 2;3 3.8549E-05 75.018 4 2 0.97957 0.97687 5.8431 4 Median 0.79537 0.93015 0.99167 2 0 Median 1.2093 1.0279 1.2609 2 0 Median 154580000 82744000 71833000 123810000 69180000 54629000 30767000 13563000 17203000 7180 1752 7348 19035;19036;19037;19038;19039;19040 29788;29789;29790;29791;29792;29793;29794;29795;29796;29797 29792 10 KPLTSSSAAPQRPISTQR AVAPSLVAPALNKPKKPLTSSSAAPQRPIS TSSSAAPQRPISTQRTAAAPKAGPGVVRKN K K P Q R T 2 2 0 0 0 2 0 0 0 1 1 1 0 0 3 4 2 0 0 0 0 0 18 2 1924.049 B4DM33;Q15691;A2VCR0 B4DM33 121 138 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes no 3 0.011976 27.324 1 2.5094 2.7096 NaN 1 Median 2.5094 2.7096 NaN 1 0 Median NaN NaN NaN 0 0 Median 8415900 2070800 6345100 8415900 2070800 6345100 0 0 0 7181 1001 7349 19041 29798 29798 1 KPLTVLNK PRFSIAPSSLDPSNRKPLTVLNKGLENPLP SLDPSNRKPLTVLNKGLENPLPERPREKEE R K P N K G 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 0 1 0 0 1 0 0 8 1 911.5804 P53350;B2R841;B4E083;Q59GD0;D3DWF3;I3L2H5 P53350 338 345 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 1.232E-05 147.36 1 0.94091 1.0905 NaN 1 Median 0.94091 1.0905 NaN 1 0 Median NaN NaN NaN 0 0 Median 65171000 33970000 31201000 65171000 33970000 31201000 0 0 0 7182 1604 7350 19042 29799;29800 29800 2 KPMESSSVVSCR ENTKESKSQSEDLGRKPMESSSVVSCRDRK LGRKPMESSSVVSCRDRKDRRRSMCYSDGR R K P C R D 0 1 0 0 1 0 1 0 0 0 0 1 1 0 1 4 0 0 0 2 0 0 12 1 1365.6381 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 799 810 CDCA2 Cell division cycle-associated protein 2 yes no 2 0.011248 50.292 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7183 1233 7351 19043 29801 29801 948 1 KPNAETTVASEIK KNSHHIHKNADDSTKKPNAETTVASEIKET TKKPNAETTVASEIKETNDTWNSQFGKRPE K K P I K E 2 0 1 0 0 0 2 0 0 1 0 2 0 0 1 1 2 0 0 1 0 0 13 1 1386.7355 A8K273;B2RTX8;Q7Z5K2 A8K273 193 205 WAPAL Wings apart-like protein homolog yes no 2 0.035885 53.569 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7184 708 7352 19044 29802 29802 1 KPNEGADGQWK AIQNKDRAKVEFNIRKPNEGADGQWKKGFV FNIRKPNEGADGQWKKGFVLHKSKSEEAHA R K P W K K 1 0 1 1 0 1 1 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 11 1 1228.5836 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 289 299 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 2 1.0117E-07 115.78 1 1.882 2.1686 NaN 1 Median 1.882 2.1686 NaN 1 0 Median NaN NaN NaN 0 0 Median 9438500 3075100 6363400 9438500 3075100 6363400 0 0 0 7185 1832 7353 19045 29803 29803 1 KPNPVEEEPSR SGDEGIKVLKQRAKKKPNPVEEEPSRRRPR RAKKKPNPVEEEPSRRRPRAPKEKAQPLED K K P S R R 0 1 1 0 0 0 3 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 11 1 1280.6361 P46013 P46013 2653 2663 MKI67 Antigen KI-67 yes yes 2;3 2.7985E-12 143.24 4 1 1.5221 1.7032 13.218 5 Median 1.4969 1.7262 4.1774 4 0 Median 1.5709 1.3022 NaN 1 0 Median 126030000 46861000 79165000 120280000 45332000 74952000 5741600 1529000 4212600 7186 1569 7354 19046;19047;19048;19049;19050 29804;29805;29806;29807;29808;29809;29810;29811 29804 8 KPPAPPSPVQSQSPSTNWSPAVPVK SSSRSVSGSPEPAAKKPPAPPSPVQSQSPS SQSPSTNWSPAVPVKKAKSPTPSPSPPRNS K K P V K K 2 0 1 0 0 2 0 0 0 0 0 2 0 0 8 5 1 1 0 3 0 0 25 1 2582.3493 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;E9PCT1 A0A0S2Z4W1 763 787 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 3 0.048718 8.3958 2 0.57576 0.50557 4.1731 2 Median NaN NaN NaN 0 0 Median 0.57576 0.50557 4.1731 2 0 Median 4854600 2937900 1916700 0 0 0 4854600 2937900 1916700 7187 570 7355 19051;19052 29812;29813 29812 2 KPPARPSAAAAAIAVAAAEEER GPGGPPQKPAPSSQRKPPARPSAAAAAIAV AAAAAIAVAAAEEERRLRQRNRLRLEEDKP R K P E R R 10 2 0 0 0 0 3 0 0 1 0 1 0 0 3 1 0 0 0 1 0 0 22 2 2146.1495 B2RAX6;Q9Y5J1 B2RAX6 25 46 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3;4 8.1709E-05 36.9 3 1.2998 1.2586 5.6473 3 Median NaN NaN NaN 0 0 Median 1.2998 1.2586 5.6473 3 0 Median 23222000 10422000 12800000 0 0 0 23222000 10422000 12800000 7188 876 7356 19053;19054;19055 29814;29815;29816;29817 29814 4 KPPCCVLSNPDQK RPEYREDFVLTVTGKKPPCCVLSNPDQKGK GKKPPCCVLSNPDQKGKMRRIDCLRQADKV K K P Q K G 0 0 1 1 2 1 0 0 0 0 1 2 0 0 3 1 0 0 0 1 0 0 13 1 1541.733 B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857;S4R3K4;S4R308;K7ESG9;K7EKH0;K7EJB0;Q7Z3K7;C9JWJ8;K7EN08;D2DXM9;B4DHW2;Q14938;K7EMQ5 B1AKN6 99 111 NFIA;NFIX;DKFZp686I05275 Nuclear factor 1;Nuclear factor 1 A-type;Nuclear factor 1 X-type yes no 2;3 0.0064481 64.121 2 1 0.85332 0.85681 31.087 2 Median 0.93541 1.0675 NaN 1 0 Median 0.77844 0.68773 NaN 1 0 Median 15142000 8499200 6642600 12691000 7103100 5587900 2450800 1396100 1054700 7189 816 7357 19056;19057;19058 29818;29819;29820 29818 3 KPPLLNNADSVQAK SNRFYTLIPHDFGMKKPPLLNNADSVQAKV KKPPLLNNADSVQAKVEMLDNLLDIEVAYS K K P A K V 2 0 2 1 0 1 0 0 0 0 2 2 0 0 2 1 0 0 0 1 0 0 14 1 1493.8202 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 748 761 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 3.3281E-21 162.22 4 3 0.64684 0.76281 10.842 7 Median 0.64201 0.75121 1.2304 4 0 Median 1.1004 0.93527 2.4543 3 0 Plateau 1487900000 874750000 613130000 1376100000 822750000 553360000 111760000 51997000 59765000 7190 139 7358 19059;19060;19061;19062;19063;19064;19065 29821;29822;29823;29824;29825;29826;29827;29828;29829;29830;29831;29832;29833 29828 12 KPPPVPALPSK TRPVKKVSKEEKKSKKPPPVPALPSKLPTF KKSKKPPPVPALPSKLPTFGAPEQLVDLKQ K K P S K L 1 0 0 0 0 0 0 0 0 0 1 2 0 0 5 1 0 0 0 1 0 0 11 1 1129.6859 Q14258;Q59GW5;D3DTY9 Q14258 392 402 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 3 0.017849 41.242 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6526900 0 6526900 6526900 0 6526900 0 0 0 7191 1731;1802 7359 19066 29834 29834 1 KPPTDEELK SEDSSDDEPLIKKLKKPPTDEELKETIKKL LIKKLKKPPTDEELKETIKKLLASANLEEV K K P L K E 0 0 0 1 0 0 2 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 9 1 1055.5499 B4DNW3;H0Y993;P35659;B4DFG0 P35659 318 326 DEK Protein DEK no no 2 1.4505E-07 141.02 2 0.61724 0.72199 0.3545 2 Median 0.61724 0.72199 0.3545 2 0 Median NaN NaN NaN 0 0 Median 440420000 275370000 165050000 440420000 275370000 165050000 0 0 0 7192 1546;1018 7360 19067;19068 29835;29836;29837;29838 29835 4 KPPVKPPTEPIGFDLEIEK ELDPRILEGGPILPKKPPVKPPTEPIGFDL KPPTEPIGFDLEIEKRIQERESKKKTEDEH K K P E K R 0 0 0 1 0 0 3 1 0 2 1 3 0 1 5 0 1 0 0 1 0 0 19 2 2133.1722 Q643R0;Q9ULW0;B3KM90 Q643R0 421 439 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 0.0032413 37.112 2 2 1.2564 1.2092 5.3344 2 Median NaN NaN NaN 0 0 Median 1.2564 1.2092 5.3344 2 0 Median 85306000 35904000 49402000 29998000 12735000 17263000 55308000 23169000 32139000 7193 1837 7361 19069;19070;19071;19072 29839;29840;29841;29842 29841 4 KPQAILEEK ERKDLRAAIEVNAGRKPQAILEEKLKQLEE EVNAGRKPQAILEEKLKQLEEECRQKEAER R K P E K L 1 0 0 0 0 1 2 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 9 1 1054.6023 Q8N556;Q6ZRV0 Q8N556 606 614 AFAP1 Actin filament-associated protein 1 yes no 2 3.4457E-05 106.2 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13923000 0 13923000 13923000 0 13923000 0 0 0 7194 1910 7362 19073;19074;19075;19076 29843;29844;29845;29846 29843 4 KPQDQLVIER RRQPQEEVVHEDQGKKPQDQLVIERERKWE EDQGKKPQDQLVIERERKWEQQLQEEQEQK K K P E R E 0 1 0 1 0 2 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1224.6826 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424;H0YDQ3 A0A1P7ZIM8 951 960 LMO7 LIM domain only protein 7 yes no 3 0.01593 34.501 1 1.49 1.6663 NaN 1 Median 1.49 1.6663 NaN 1 0 Median NaN NaN NaN 0 0 Median 11894000 3210100 8683800 11894000 3210100 8683800 0 0 0 7195 640 7363 19077 29847 29847 1 KPQLDVTR EKKNQLELLRVMNSKKPQLDVTRATNKQMR LRVMNSKKPQLDVTRATNKQMREEDQEEAA K K P T R A 0 1 0 1 0 1 0 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 1 955.54508 Q15050 Q15050 279 286 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2;3 3.9628E-09 163.15 3 2 0.92586 1.0328 19.806 5 Median 0.92586 1.122 7.3036 3 0 Median 0.91107 0.78633 1.549 2 0 Median 664090000 341570000 322520000 610430000 312650000 297780000 53660000 28922000 24738000 7196 1750 7364 19078;19079;19080;19081;19082 29848;29849;29850;29851;29852;29853;29854;29855 29849 8 KPSISITTESLK GRKRRWGASTATTQKKPSISITTESLKSLI TQKKPSISITTESLKSLIPDIKPLAGQEAV K K P L K S 0 0 0 0 0 0 1 0 0 2 1 2 0 0 1 3 2 0 0 0 0 0 12 1 1302.7395 G3V3B0;Q69YJ6;S4R3H4;E7EQT4;Q9UKV3;B4DQZ7;G3V3T3 G3V3B0 102 113 ACIN1;DKFZp667N107 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.008159 52.391 1 1.2418 1.4315 NaN 1 Median 1.2418 1.4315 NaN 1 0 Median NaN NaN NaN 0 0 Median 28242000 12659000 15583000 28242000 12659000 15583000 0 0 0 7197 1220 7365 19083 29856 29856 1 KPSSSASSSSSSSSFSLDAAGASLATLPGGSILQPR CTVVNSPGDAPKPHRKPSSSASSSSSSSSF ASLATLPGGSILQPRPSLPLSSTMHLGPVV R K P P R P 5 1 0 1 0 1 0 3 0 1 4 1 0 1 3 14 1 0 0 0 0 0 36 1 3394.6852 Q7Z5J4 Q7Z5J4 1626 1661 RAI1 Retinoic acid-induced protein 1 yes yes 3 0.034031 7.805 2 1.4013 1.175 9.1407 2 Median NaN NaN NaN 0 0 Median 1.4013 1.175 9.1407 2 0 Median 7348200 2673700 4674500 0 0 0 7348200 2673700 4674500 7198 1879 7366 19084;19085 29857;29858;29859 29857 3 KPSTSDDSDSNFEK SQKPDPAKTKNRRKRKPSTSDDSDSNFEKI RKPSTSDDSDSNFEKIVSKAVTSKKSKGES R K P E K I 0 0 1 3 0 0 1 0 0 0 0 2 0 1 1 4 1 0 0 0 0 0 14 1 1555.6638 P11388 P11388 1467 1480 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 1.102E-37 171.73 2 0.80255 0.92544 1.72 2 Median 0.80255 0.92544 1.72 2 0 Median NaN NaN NaN 0 0 Median 19224000 10347000 8876100 19224000 10347000 8876100 0 0 0 7199 1471 7367 19086;19087 29860;29861;29862 29861 3 KPTHSQEPQGPEAMER TEEDPSLPALLTQPRKPTHSQEPQGPEAME PTHSQEPQGPEAMERRVQAVREIHPFIDDY R K P E R R 1 1 0 0 0 2 3 1 1 0 0 1 1 0 3 1 1 0 0 0 0 0 16 1 1820.8475 O95602;B7ZKR9;B7Z8X7;B7Z284;Q53T12;Q96AG9 O95602 1485 1500 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 0.00088796 40.237 1 0.7432 0.82257 NaN 1 Median 0.7432 0.82257 NaN 1 0 Median NaN NaN NaN 0 0 Median 2262900 1352400 910510 2262900 1352400 910510 0 0 0 7200 1428 7368 19088 29863 29863 1121 1 KPTSQIPETK QVARFCLFHSFFVTKKPTSQIPETKHPFSF FFVTKKPTSQIPETKHPFSFPLENQAREAV K K P T K H 0 0 0 0 0 1 1 0 0 1 0 2 0 0 2 1 2 0 0 0 0 0 10 1 1127.6186 Q9BQG0;I3L1L3;B4DZZ1;I3L2H8 Q9BQG0 489 498 MYBBP1A Myb-binding protein 1A yes no 2 0.0010449 83.869 1 1.0496 1.2041 NaN 1 Median 1.0496 1.2041 NaN 1 0 Median NaN NaN NaN 0 0 Median 8641000 4108200 4532800 8641000 4108200 4532800 0 0 0 7201 1997 7369 19089 29864;29865 29864 2 KPVADCVISIPSFFTDAER MLLAKLKETSENALKKPVADCVISIPSFFT DCVISIPSFFTDAERRSVMAAAQVAGLNCL K K P E R R 2 1 0 2 1 0 1 0 0 2 0 1 0 2 2 2 1 0 0 2 0 0 19 1 2151.067 B3KNM0;Q53ZP9;A0A140VKE7;B4DZR0;O95757;E9PDE8;B4DXT2 B3KNM0 135 153 HSPA4L Heat shock 70 kDa protein 4L yes no 3 0.034788 18.623 1 1.9466 2.1906 NaN 1 Median 1.9466 2.1906 NaN 1 0 Median NaN NaN NaN 0 0 Median 13517000 5743500 7773400 13517000 5743500 7773400 0 0 0 7202 624 7370 19090 29866 29866 0 KPVEELTEEEK SPEFKDPLIDKEYYRKPVEELTEEEKYVRE EYYRKPVEELTEEEKYVRELKKTQLIKAAP R K P E K Y 0 0 0 0 0 0 5 0 0 0 1 2 0 0 1 0 1 0 0 1 0 0 11 1 1329.6664 A0A024R8L0;J3QLS3;Q9Y2R9;J3QKW2 A0A024R8L0 53 63 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2 1.1247E-12 147.62 2 1.3549 1.5802 19.548 2 Median 1.3549 1.5802 19.548 2 0 Median NaN NaN NaN 0 0 Median 35126000 15002000 20124000 35126000 15002000 20124000 0 0 0 7203 250 7371 19091;19092 29867;29868 29868 2 KPVIVFVPSR MAKPVYHAITKHSPKKPVIVFVPSRKQTRL KHSPKKPVIVFVPSRKQTRLTAIDILTTCA K K P S R K 0 1 0 0 0 0 0 0 0 1 0 1 0 1 2 1 0 0 0 3 0 0 10 1 1140.7019 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5 O75643 1557 1566 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 0.0016799 68.893 4 0.86892 0.96549 8.6193 4 Median 0.86892 0.96549 8.6193 4 0 Median NaN NaN NaN 0 0 Median 68166000 35252000 32914000 68166000 35252000 32914000 0 0 0 7204 1411 7372 19093;19094;19095;19096 29869;29870;29871;29872;29873 29870 4 KPVLGSYR QMTTEKQKQDANMPKKPVLGSYRGQIVQSK QDANMPKKPVLGSYRGQIVQSKINSFRKPL K K P Y R G 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 1 0 0 8 1 918.5287 B2RMQ4;Q8WWK9 B2RMQ4 172 179 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.0036905 93.429 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19864000 0 19864000 19864000 0 19864000 0 0 0 7205 895 7373 19097 29874 29874 1 KPVSSYLR YLPRWFSSVLASCPKKPVSSYLRFSKEQLP VLASCPKKPVSSYLRFSKEQLPIFKAQNPD K K P L R F 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 2 0 0 1 1 0 0 8 1 948.53927 H7BYN3;Q6LES8;E5KSX8;E5KSU5;Q00059;Q05D31;Q3SX57 H7BYN3 34 41 TFAM Transcription factor A, mitochondrial yes no 2 0.029232 60.436 1 1.3094 1.5403 NaN 1 Median 1.3094 1.5403 NaN 1 0 Median NaN NaN NaN 0 0 Median 74592000 32600000 41992000 74592000 32600000 41992000 0 0 0 7206 1209 7374 19098 29875 29875 1 KPVTVSPTTPTSPTEGEAS KPVLDVHAELDRITRKPVTVSPTTPTSPTE VSPTTPTSPTEGEAS_______________ R K P A S - 1 0 0 0 0 0 2 1 0 0 0 1 0 0 4 3 5 0 0 2 0 0 19 1 1884.9317 B3KM42;E9PHI6;B4DDM4;Q9Y6G9 B3KM42 359 377 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes no 2 0.0011727 52.576 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3965700 0 3965700 3457000 0 3457000 508730 0 508730 7207 901 7375 19099;19100 29876;29877 29876 2 KPWQLQGEVTAQK MNEKIASLEKELLEKKPWQLQGEVTAQKRP EKKPWQLQGEVTAQKRPENSLLEETLHFDH K K P Q K R 1 0 0 0 0 3 1 1 0 0 1 2 0 0 1 0 1 1 0 1 0 0 13 1 1511.8096 B3KPV5;O00566;U3KQ48 B3KPV5 382 394 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2;3 1.4181E-09 98.407 4 4 1.0661 1.0531 7.9685 8 Median 0.88258 1.0313 9.9946 4 0 Median 1.2597 1.0862 2.9227 4 0 Median 102420000 51327000 51089000 80919000 42179000 38740000 21498000 9148700 12349000 7208 924 7376 19101;19102;19103;19104;19105;19106;19107;19108 29878;29879;29880;29881;29882;29883;29884;29885;29886;29887;29888;29889;29890 29890 11 KPYGVLYK NATVTKVLKDVYALKKPYGVLYKKKNITRP KDVYALKKPYGVLYKKKNITRPFEDQTSLE K K P Y K K 0 0 0 0 0 0 0 1 0 0 1 2 0 0 1 0 0 0 2 1 0 0 8 1 966.55385 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 57 64 RPF2 Ribosome production factor 2 homolog yes no 2 0.0027184 120.49 2 2 0.91898 0.95279 4.7293 4 Median 0.82001 0.96281 1.7005 2 0 Median 1.074 0.91402 6.0961 2 0 Median 210130000 105920000 104210000 142330000 73318000 69011000 67801000 32606000 35195000 7209 773 7377 19109;19110;19111;19112 29891;29892;29893;29894;29895;29896;29897 29895 7 KPYVLNDLEAEASLPEK AMEVDIEERPKELVRKPYVLNDLEAEASLP YVLNDLEAEASLPEKKGNTLSRDLIDYVRY R K P E K K 2 0 1 1 0 0 3 0 0 0 3 2 0 0 2 1 0 0 1 1 0 0 17 1 1914.9939 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9P0T8 Q9Y3C1 90 106 NOP16 Nucleolar protein 16 yes no 3 3.3342E-13 111.34 2 2 0.88991 1.0504 23.164 4 Linear 0.8848 1.0344 2.9509 2 0 Median 0.81646 0.69397 2.7507 2 0 Median 153510000 81406000 72109000 102410000 53290000 49123000 51102000 28116000 22986000 7210 2135 7378 19113;19114;19115;19116 29898;29899;29900;29901;29902;29903;29904;29905 29901 8 KQDFDEDDILK QEPQKSKGKKKKEKKKQDFDEDDILKELEE KEKKKQDFDEDDILKELEELSLEAQGIKAD K K Q L K E 0 0 0 4 0 1 1 0 0 1 1 2 0 1 0 0 0 0 0 0 0 0 11 1 1364.646 Q8N5A0;A0A087WUT6;O60841;A0JLR8;Q05CQ1 Q8N5A0 50 60 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.0025769 70.942 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7211 414 7379 19117 29906 29906 1 KQDPYLLK DGTWKLWDTDVEYKKKQDPYLLKTGRFEEA TDVEYKKKQDPYLLKTGRFEEAAGAAPCRL K K Q L K T 0 0 0 1 0 1 0 0 0 0 2 2 0 0 1 0 0 0 1 0 0 0 8 1 1003.5702 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;B4DY59 E9PF19 279 286 TBL2 Transducin beta-like protein 2 yes no 2 0.0063136 95.741 1 1.0217 1.1689 NaN 1 Median 1.0217 1.1689 NaN 1 0 Median NaN NaN NaN 0 0 Median 17488000 7778000 9710100 17488000 7778000 9710100 0 0 0 7212 582 7380 19118 29907;29908 29907 2 KQEEGAEIQCEAETGGTHK SGLVPKKKQSVVQEKKQEEGAEIQCEAETG GAEIQCEAETGGTHKRDFSEIKSQQCQGNE K K Q H K R 2 0 0 0 1 2 5 3 1 1 0 2 0 0 0 0 2 0 0 0 0 0 19 1 2100.9382 A0A024R0F1;Q9UNY4 A0A024R0F1 195 213 TTF2 Transcription termination factor 2 yes no 3 2.8421E-06 71.872 1 1 0.87373 0.87979 51.886 2 Median 0.53451 0.6096 NaN 1 0 Median 1.4282 1.2697 NaN 1 0 Median 13070000 8327200 4743200 11590000 7691000 3899300 1480000 636160 843840 7213 44 7381 19119;19120 29909;29910 29909 2 KQEELVQQVR QPLCKAFMVTDEDIRKQEELVQQVRKRLEE DEDIRKQEELVQQVRKRLEEALMADMLAHV R K Q V R K 0 1 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 1 1255.6884 O95983;B3KMA8;K7EIE8 O95983 227 236 MBD3 Methyl-CpG-binding domain protein 3 yes no 2;3 6.3523E-40 191.1 3 2 0.63744 0.75153 47.818 5 Median 0.619 0.72798 17.997 3 0 Median 1.833 1.5472 0.80261 2 0 Median 135000000 81897000 53105000 125400000 78315000 47087000 9600200 3581800 6018300 7214 1432 7382 19121;19122;19123;19124;19125 29911;29912;29913;29914;29915;29916;29917 29915 7 KQEGPATQVDSAVGTLPATSPQSTSVQAK GASSSKESSRISDGKKQEGPATQVDSAVGT TLPATSPQSTSVQAKGTNKLRKPKLPEVQQ K K Q A K G 4 0 0 1 0 4 1 2 0 0 1 2 0 0 3 4 4 0 0 3 0 0 29 1 2882.4621 E7ETY2;B4DRA2 E7ETY2 1091 1119 TCOF1 no no 3 0.0056489 22.034 2 1 0.6113 0.69786 39.178 3 Median 0.5276 0.60678 19.778 2 0 Median 1.3005 1.1437 NaN 1 0 Median 26539000 13728000 12811000 23856000 12953000 10903000 2683300 774670 1908600 7215 1225 7383 19126;19127;19128 29918;29919;29920;29921;29922 29920 5 KQELEVLTANIQDLK KKDNLLKLIAEVKGKKQELEVLTANIQDLK KQELEVLTANIQDLKEEYSRKKETISTANK K K Q L K E 1 0 1 1 0 2 2 0 0 1 3 2 0 0 0 0 1 0 0 1 0 0 15 1 1740.9622 Q9HBM1;C9JW94 Q9HBM1 93 107 SPC25 Kinetochore protein Spc25 yes no 3 0.035006 17.895 1 1 0.72147 0.71492 19.3 2 Median 0.71862 0.81946 NaN 1 0 Median 0.72434 0.62372 NaN 1 0 Median 14722000 8158700 6562800 11377000 6370200 5006800 3344500 1788500 1556000 7216 2050 7384 19129;19130 29923;29924 29923 2 KQELLEALTK LKEACRAYGLKSGLKKQELLEALTKHFQD_ KSGLKKQELLEALTKHFQD___________ K K Q T K H 1 0 0 0 0 1 2 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 10 1 1171.6812 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 596 605 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 3.5473E-40 195.51 2 2 0.41599 0.52411 36.218 4 Linear 0.38728 0.45436 3.9414 2 0 Median 0.2856 0.24295 0.61467 2 0 Median 587530000 411820000 175700000 475010000 324290000 150720000 112520000 87535000 24981000 7217 82 7385 19131;19132;19133;19134 29925;29926;29927;29928;29929;29930;29931;29932;29933 29927 9 KQELQPGTAYK SDDDLGTVPDYNQLKKQELQPGTAYKFRVA NQLKKQELQPGTAYKFRVAGINACGRGPFS K K Q Y K F 1 0 0 0 0 2 1 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 11 1 1261.6667 A6NEM2;P51610;H7C1C4 A6NEM2 1898 1908 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.0012048 85.154 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9784500 0 9784500 6633400 0 6633400 3151100 0 3151100 7218 680 7386 19135;19136 29934;29935 29934 2 KQEQLTPGVVYVR QKEVAQVRKRITQRKKQEQLTPGVVYVRHL RKKQEQLTPGVVYVRHLPNLLDETQIFSYF K K Q V R H 0 1 0 0 0 2 1 1 0 0 1 1 0 0 1 0 1 0 1 3 0 0 13 1 1515.8409 Q9BYG3;B4DSM4 Q9BYG3 38 50 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2;3 1.9682E-38 180.97 4 3 1.0558 1.1902 7.9393 6 Median 1.0388 1.2235 10.166 4 0 Median 1.3415 1.1645 1.6502 2 0 Median 456730000 208580000 248150000 357450000 172040000 185420000 99275000 36542000 62734000 7219 2019 7387 19137;19138;19139;19140;19141;19142;19143 29936;29937;29938;29939;29940;29941;29942;29943;29944;29945;29946;29947;29948;29949;29950 29941 15 KQGEDNSTAQDTEELEK ALPTGKSKKKKKKKKKQGEDNSTAQDTEEL GEDNSTAQDTEELEKEIREDLPVNTSKTRP K K Q E K E 1 0 1 2 0 2 4 1 0 0 1 2 0 0 0 1 2 0 0 0 0 0 17 1 1920.8549 A0A024R9D2;Q86UE4;E5RJU9 A0A024R9D2 451 467 MTDH Protein LYRIC yes no 3 0.004028 20.091 1 0.51769 0.46313 NaN 1 Median NaN NaN NaN 0 0 Median 0.51769 0.46313 NaN 1 0 Median 1895600 1315000 580590 0 0 0 1895600 1315000 580590 7220 275 7388 19144 29951 29951 1 KQISNLQQSISDAEQR NRVIQRLRSEIDNVKKQISNLQQSISDAEQ QISNLQQSISDAEQRGENALKDAKNKLNDL K K Q Q R G 1 1 1 1 0 4 1 0 0 2 1 1 0 0 0 3 0 0 0 0 0 0 16 1 1843.9388 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 417 432 KRT1 Keratin, type II cytoskeletal 1 no no 3 0.0003968 63.421 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4007100 4007100 0 0 0 0 4007100 4007100 0 + 7221 1308;1309 7389 19145 29952 29952 1 KQPPKEPSEVPTPK QEKDGTEKRGRGRPRKQPPKEPSEVPTPKR RKQPPKEPSEVPTPKRPRGRPKGSKNKGAA R K Q P K R 0 0 0 0 0 1 2 0 0 0 0 3 0 0 5 1 1 0 0 1 0 0 14 2 1560.8512 Q5T6U8;Q6IPL9 Q5T6U8 31 44 HMGA1 yes no 2;3 2.5118E-06 100.31 3 2 0.70987 0.82974 43.906 5 Median 0.80117 0.93647 6.7702 3 0 Plateau 0.42071 0.4049 5.0434 2 0 Median 541710000 324970000 216740000 386110000 214930000 171180000 155590000 110040000 45557000 7222 1823 7390 19146;19147;19148;19149;19150 29953;29954;29955;29956;29957;29958;29959;29960;29961;29962;29963 29955 11 KQPPVSPGTALVGSQK QEKDGTEKRGRGRPRKQPPVSPGTALVGSQ QPPVSPGTALVGSQKEPSEVPTPKRPRGRP R K Q Q K E 1 0 0 0 0 2 0 2 0 0 1 2 0 0 3 2 1 0 0 2 0 0 16 1 1592.8886 B4DWA0;A0A024RCT9;P17096 B4DWA0 31 46 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 2;3 2.724E-69 199.15 5 4 0.70726 0.83459 55.905 9 Median 0.75605 0.8833 6.0615 5 0 Median 0.36297 0.30876 2.0613 4 0 Median 3723400000 2155300000 1568200000 3136600000 1729000000 1407600000 586800000 426290000 160510000 7223 372 7391 19151;19152;19153;19154;19155;19156;19157;19158;19159 29964;29965;29966;29967;29968;29969;29970;29971;29972;29973;29974;29975;29976;29977;29978;29979;29980;29981;29982;29983;29984;29985;29986;29987;29988;29989;29990;29991;29992;29993;29994 29973 31 KQQAIELTQEEPYSDIIATPGPR RKQAAAKFYSFLVLKKQQAIELTQEEPYSD QEEPYSDIIATPGPRFHII___________ K K Q P R F 2 1 0 1 0 3 3 1 0 3 1 1 0 0 3 1 2 0 1 0 0 0 23 1 2583.318 A0A024R9J0;O60216;E5RFZ5;B3KUT8;E5RG18;E5RI01 A0A024R9J0 605 627 RAD21 Double-strand-break repair protein rad21 homolog yes no 3 0.0061725 22.32 2 0.9719 0.82735 21.443 2 Median NaN NaN NaN 0 0 Median 0.9719 0.82735 21.443 2 0 Median 5837900 2802500 3035400 0 0 0 5837900 2802500 3035400 7224 280 7392 19160;19161 29995;29996 29995 2 KQTTLAFK RLEKKQKREPGTKTKKQTTLAFKPIKKGKK EPGTKTKKQTTLAFKPIKKGKKRNPWSDSE K K Q F K P 1 0 0 0 0 1 0 0 0 0 1 2 0 1 0 0 2 0 0 0 0 0 8 1 935.54402 P11388 P11388 1276 1283 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0010847 129.42 2 2 0.84893 1.0021 11.938 3 Median 0.78493 0.91928 12.201 2 0 Median 1.2472 1.0605 NaN 1 0 Median 204740000 108020000 96724000 188580000 105480000 83105000 16160000 2541100 13619000 7225 1471 7393 19162;19163;19164;19165 29997;29998;29999;30000;30001;30002 29999 6 KQTTLAFKPIK RLEKKQKREPGTKTKKQTTLAFKPIKKGKK TKTKKQTTLAFKPIKKGKKRNPWSDSESDR K K Q I K K 1 0 0 0 0 1 0 0 0 1 1 3 0 1 1 0 2 0 0 0 0 0 11 2 1273.7758 P11388 P11388 1276 1286 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0058865 43.897 1 1.193 1.1174 NaN 1 Median NaN NaN NaN 0 0 Median 1.193 1.1174 NaN 1 0 Median 10975000 4274900 6700600 0 0 0 10975000 4274900 6700600 7226 1471 7394 19166 30003 30003 1 KQVVNIPSFIVR HHARVLIRQRHIRVRKQVVNIPSFIVRLDS RVRKQVVNIPSFIVRLDSQKHIDFSLRSPY R K Q V R L 0 1 1 0 0 1 0 0 0 2 0 1 0 1 1 1 0 0 0 3 0 0 12 1 1398.8347 A0A024R4M0;P46781;A5D904 A0A024R4M0 139 150 RPS9 40S ribosomal protein S9 yes no 3 0.044718 19.277 1 0.96009 0.85677 NaN 1 Median NaN NaN NaN 0 0 Median 0.96009 0.85677 NaN 1 0 Median 2136700 1065100 1071600 0 0 0 2136700 1065100 1071600 7227 157 7395 19167 30004;30005 30004 2 KRPLALQR SGADDGSVALWGLSKKRPLALQREAHGLRG ALWGLSKKRPLALQREAHGLRGEPGLEQPF K K R Q R E 1 2 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 2 980.62433 O43818 O43818 355 362 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 3 0.0072581 82.716 1 0.81136 0.91855 NaN 1 Median 0.81136 0.91855 NaN 1 0 Median NaN NaN NaN 0 0 Median 39032000 21162000 17870000 39032000 21162000 17870000 0 0 0 7228 1389 7396 19168 30006 30006 1 KSDFEFTLK VIPRVIQLLFKEIDKKSDFEFTLKVSYLEI FKEIDKKSDFEFTLKVSYLEIYNEEILDLL K K S L K V 0 0 0 1 0 0 1 0 0 0 1 2 0 2 0 1 1 0 0 0 0 0 9 1 1113.5706 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 132 140 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.00024238 108.47 1 1 1.1776 1.1716 13.754 2 Median 0.91465 1.063 NaN 1 0 Median 1.5161 1.2912 NaN 1 0 Median 153730000 78727000 75007000 128920000 68159000 60765000 24809000 10568000 14241000 7229 1803 7397 19169;19170 30007;30008;30009 30007 3 KSDGIYIINLK GTNLDFQMEQYIYKRKSDGIYIINLKRTWE IYKRKSDGIYIINLKRTWEKLLLAARAIVA R K S L K R 0 0 1 1 0 0 0 1 0 3 1 2 0 0 0 1 0 0 1 0 0 0 11 1 1262.7234 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;Q96RS2;F8WD59 C9J9K3 42 52 RPSA;LOC388524 40S ribosomal protein SA yes no 2 0.0086739 63.32 1 1.0412 0.90847 NaN 1 Median NaN NaN NaN 0 0 Median 1.0412 0.90847 NaN 1 0 Median 3124000 1884200 1239900 0 0 0 3124000 1884200 1239900 7230 119 7398 19171 30010 30010 0 KSDIDEIVLVGGSTR TMKPVQKVLEDSDLKKSDIDEIVLVGGSTR KSDIDEIVLVGGSTRIPKIQQLVKEFFNGK K K S T R I 0 1 0 2 0 0 1 2 0 2 1 1 0 0 0 2 1 0 0 2 0 0 15 1 1587.8468 V9HWB4;P11021 V9HWB4 353 367 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 3 0.0020839 27.85 1 2 0.63749 0.68757 21.592 3 Plateau 0.63749 0.68757 NaN 1 0 Median 0.56214 0.47446 3.8553 2 0 Median 20992000 12319000 8673800 14452000 8455100 5996900 6540300 3863400 2676900 7231 1466 7399 19172;19173;19174 30011;30012;30013 30012 3 KSDPVVSYR CLKDLEEDHACIPIKKSDPVVSYRETVSEE ACIPIKKSDPVVSYRETVSEESNVLCLSKS K K S Y R E 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 2 0 0 1 2 0 0 9 1 1049.5506 P13639;Q8TA90;B4DPU3 P13639 572 580 EEF2 Elongation factor 2 yes no 2 0.0005814 90.906 2 2.9417 3.4379 NaN 1 Median 2.9417 3.4379 NaN 1 0 Median NaN NaN NaN 0 0 Median 81596000 13268000 68328000 81596000 13268000 68328000 0 0 0 7232 1478 7400 19175;19176 30014;30015;30016 30014 3 KSDSNPLTEILK GKIIVGDATEKDASKKSDSNPLTEILKCPT ASKKSDSNPLTEILKCPTKVVLLRNMVGAG K K S L K C 0 0 1 1 0 0 1 0 0 1 2 2 0 0 1 2 1 0 0 0 0 0 12 1 1343.7296 Q5W009;Q96I25 Q5W009 290 301 RBM17 Splicing factor 45 yes no 2 0.052704 41.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6492300 0 6492300 6492300 0 6492300 0 0 0 7233 1836 7401 19177 30017 30017 1 KSDVEAIFSK NSRVFIGNLNTLVVKKSDVEAIFSKYGKIV TLVVKKSDVEAIFSKYGKIVGCSVHKGFAF K K S S K Y 1 0 0 1 0 0 1 0 0 1 0 2 0 1 0 2 0 0 0 1 0 0 10 1 1122.5921 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V555;G3V575;D3DPI2;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8;B4DMJ1;B4DSU6;G3V4M8;G3V2H6;Q569J8;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V5X6;G3V3K6;G3V251 G3V4W0 30 39 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 2 1.8595E-22 172.21 2 2 0.83841 0.83537 53.464 4 Median 1.1333 1.3317 1.9312 2 0 Median 0.62059 0.52764 0.96113 2 0 Median 1699900000 786230000 913690000 1588900000 718890000 870050000 110980000 67341000 43640000 7234 837;781 7402 19178;19179;19180;19181 30018;30019;30020;30021;30022;30023;30024;30025 30025 8 KSDVETIFSK NSRVFIGNLNTALVKKSDVETIFSKYGRVA TALVKKSDVETIFSKYGRVAGCSVHKGYAF K K S S K Y 0 0 0 1 0 0 1 0 0 1 0 2 0 1 0 2 1 0 0 1 0 0 10 1 1152.6027 A8K4T9;Q53GL6;Q5QPL9;Q9UKM9;Q5QPM1;Q5QPM2;B4DSJ1 A8K4T9 35 44 RALY RNA-binding protein Raly yes no 2 4.6266E-06 110.66 2 0.91177 1.057 NaN 1 Median 0.91177 1.057 NaN 1 0 Median NaN NaN NaN 0 0 Median 83276000 33178000 50098000 83276000 33178000 50098000 0 0 0 7235 741 7403 19182;19183 30026;30027;30028 30028 3 KSEIEYYAMLAK KAKLVILANNCPALRKSEIEYYAMLAKTGV ALRKSEIEYYAMLAKTGVHHYSGNNIELGT R K S A K T 2 0 0 0 0 0 2 0 0 1 1 2 1 0 0 1 0 0 2 0 0 0 12 1 1444.7272 E5RI99;A0A024R9D3;P62888 E5RI99 57 68 RPL30 60S ribosomal protein L30 yes no 2 0.0023638 62.298 2 0.64167 0.54926 NaN 1 Median NaN NaN NaN 0 0 Median 0.64167 0.54926 NaN 1 0 Median 12135000 5875100 6260000 0 0 0 12135000 5875100 6260000 7236 276 7404;7405 19184;19185 30029;30030 30029 211 2 KTEIQNIEFEPK VNYFIPSHYFGGKLKKTEIQNIEFEPKEKV KLKKTEIQNIEFEPKEKVQCPPTRVMILTA K K T P K E 0 0 1 0 0 1 3 0 0 2 0 2 0 1 1 0 1 0 0 0 0 0 12 1 1474.7668 A0A0D9SFM0;Q149N8;H7C2W2;K4DI94 A0A0D9SFM0 423 434 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 3 0.038681 14.393 1 1.8562 1.6522 NaN 1 Median NaN NaN NaN 0 0 Median 1.8562 1.6522 NaN 1 0 Median 1551100 467620 1083500 0 0 0 1551100 467620 1083500 7237 527 7406 19186 30031 30031 1 KTESAVSQMQSVIELGR HYLMLPRVREELIDKKTESAVSQMQSVIEL ESAVSQMQSVIELGRVIRDRKTIPIKYPLK K K T G R V 1 1 0 0 0 2 2 1 0 1 1 1 1 0 0 3 1 0 0 2 0 0 17 1 1861.9568 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2;Q7L4K8 Q59G75 834 850 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 3 0.00060944 51.535 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5894400 0 5894400 5894400 0 5894400 0 0 0 7238 1561 7407 19187 30032 30032 1311 1 KTEVLMENFR FCPMVGSEVYSTEIKKTEVLMENFRRAIGL STEIKKTEVLMENFRRAIGLRIKETKEVYE K K T F R R 0 1 1 0 0 0 2 0 0 0 1 1 1 1 0 0 1 0 0 1 0 0 10 1 1265.6438 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 108 117 RUVBL1 RuvB-like 1 yes no 2 7.6565E-08 119.22 1 1.1978 1.4309 NaN 1 Median 1.1978 1.4309 NaN 1 0 Median NaN NaN NaN 0 0 Median 52822000 23717000 29105000 52822000 23717000 29105000 0 0 0 7239 1076 7408 19188 30033;30034 30034 827 2 KTIEESEETLK QSSYHKQQEELDALKKTIEESEETLKNTKE DALKKTIEESEETLKNTKEIQRKAEEKYEV K K T L K N 0 0 0 0 0 0 4 0 0 1 1 2 0 0 0 1 2 0 0 0 0 0 11 1 1305.6664 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;B3KM27 A0A024R158 750 760 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 3.3546E-06 111.94 2 1.9842 1.7174 9.3858 2 Median NaN NaN NaN 0 0 Median 1.9842 1.7174 9.3858 2 0 Median 6435300 2262500 4172800 0 0 0 6435300 2262500 4172800 7240 69 7409 19189;19190 30035;30036 30035 2 KTPESKPTILVK TNMGWADAMAKVLNKKTPESKPTILVKNKK LNKKTPESKPTILVKNKKLEKEKEKLKQER K K T V K N 0 0 0 0 0 0 1 0 0 1 1 3 0 0 2 1 2 0 0 1 0 0 12 2 1339.8075 Q9Y3B9;A8K201;A0JLN3 Q9Y3B9 103 114 RRP15 RRP15-like protein yes no 2;3 0.0019374 73.632 2 0.85474 1.0138 4.5257 2 Median 0.85474 1.0138 4.5257 2 0 Median NaN NaN NaN 0 0 Median 95667000 49369000 46298000 95667000 49369000 46298000 0 0 0 7241 2134 7410 19191;19192 30037;30038 30038 2 KTPETIPLTEDVLITLGK MQVKCLTAELSQWQKKTPETIPLTEDVLIT ETIPLTEDVLITLGKEEFQKLRQDLEMVLS K K T G K E 0 0 0 1 0 0 2 1 0 2 3 2 0 0 2 0 4 0 0 1 0 0 18 1 1967.1191 D6RJF0;D6RHD3;Q9BS16;D6RBN6;D6RAX0;D6RC76 D6RJF0 47 64 CENPK Centromere protein K yes no 3 0.00022681 39.387 1 1 0.82255 0.69746 NaN 1 Median NaN NaN NaN 0 0 Median 0.82255 0.69746 NaN 1 0 Median 9602200 3421600 6180600 3289700 0 3289700 6312500 3421600 2890900 7242 1203 7411 19193;19194 30039;30040 30040 2 KTPPAPSPFDLPELK KILKEMCDVEQVLSKKTPPAPSPFDLPELK KTPPAPSPFDLPELKHVATEYQENKAPGKK K K T L K H 1 0 0 1 0 0 1 0 0 0 2 2 0 1 5 1 1 0 0 0 0 0 15 1 1635.8872 Q59HG1;O95239;B3KNC0 Q59HG1 1183 1197 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 3 3.7399E-05 66.965 2 2 1.2166 1.218 18.708 4 Median 0.90389 1.0584 1.2507 2 0 Median 1.7106 1.4537 6.4 2 0 Median 242790000 118860000 123930000 183920000 97065000 86854000 58869000 21794000 37075000 7243 1803 7412 19195;19196;19197;19198 30041;30042;30043;30044;30045;30046;30047;30048;30049 30049 9 KTPTVIHK SAKDFIDLTLSKTQRKTPTVIHKHYQIHRI TLSKTQRKTPTVIHKHYQIHRIRHFYMRKV R K T H K H 0 0 0 0 0 0 0 0 1 1 0 2 0 0 1 0 2 0 0 1 0 0 8 1 922.56 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;O60747 Q8N4P8 27 34 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.039925 61.962 1 1.6279 1.4046 NaN 1 Median NaN NaN NaN 0 0 Median 1.6279 1.4046 NaN 1 0 Median 5136600 1966800 3169800 0 0 0 5136600 1966800 3169800 7244 1183 7413 19199 30050 30050 1 KTQGFILNTK ETELELQMKLWMYNKKTQGFILNTKINMPH WMYNKKTQGFILNTKINMPHEDCITALCFC K K T T K I 0 0 1 0 0 1 0 1 0 1 1 2 0 1 0 0 2 0 0 0 0 0 10 1 1148.6554 A8K330;Q8IWA0 A8K330 427 436 WDR75 WD repeat-containing protein 75 yes no 2 0.014462 55.806 2 1.9595 1.6919 13.897 2 Median NaN NaN NaN 0 0 Median 1.9595 1.6919 13.897 2 0 Median 7031200 2564500 4466700 0 0 0 7031200 2564500 4466700 7245 716 7414 19200;19201 30051;30052 30051 1 KTSFDQDSDVDIFPSDFPTEPPSLPR NPGRKTSKTTSKKPKKTSFDQDSDVDIFPS IFPSDFPTEPPSLPRTGRARKEVKYFAESD K K T P R T 0 1 0 5 0 1 1 0 0 1 1 1 0 3 5 4 2 0 0 1 0 0 26 1 2936.3716 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1546 1571 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 0.031406 12.638 1 1.2105 1.0361 NaN 1 Median NaN NaN NaN 0 0 Median 1.2105 1.0361 NaN 1 0 Median 2746200 1407400 1338700 0 0 0 2746200 1407400 1338700 7246 1679 7415 19202 30053 30053 1 KTTEEQVQASTPCPR GEDGALDDEGHSGIKKTTEEQVQASTPCPR KTTEEQVQASTPCPRTEMASARIGDEYAED K K T P R T 1 1 0 0 1 2 2 0 0 0 0 1 0 0 2 1 3 0 0 1 0 0 15 1 1730.8257 Q14137;B2RDN4;A8K3R2 Q14137 96 110 BOP1 Ribosome biogenesis protein BOP1 yes no 3 0.0069847 20.389 1 1.3257 1.1423 NaN 1 Median NaN NaN NaN 0 0 Median 1.3257 1.1423 NaN 1 0 Median 2387500 1072300 1315200 0 0 0 2387500 1072300 1315200 7247 1726 7416 19203 30054 30054 1 KTVTAMDVVYALK NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ KRKTVTAMDVVYALKRQGRTLYGFGG____ R K T L K R 2 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 1 3 0 0 13 1 1437.7901 B2R4R0;P62805 B2R4R0 80 92 HIST1H4H;HIST1H4A Histone H4 yes no 2 1.5572E-05 104.17 3 0.787 0.92202 12.437 2 Median 0.787 0.92202 12.437 2 0 Median NaN NaN NaN 0 0 Median 42677000 22180000 20497000 42677000 22180000 20497000 0 0 0 7248 828 7417 19204;19205;19206 30055;30056;30057;30058;30059;30060 30058 656 6 KVAPAPAVVK ______________________________ KAKGKKVAPAPAVVKKQEAKKVVNPLFEKR K K V V K K 3 0 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 3 0 0 10 1 978.6226 P62424;Q5T8U3 P62424 11 20 RPL7A 60S ribosomal protein L7a yes no 2 0.058238 40.882 1 0.81275 0.70685 NaN 1 Median NaN NaN NaN 0 0 Median 0.81275 0.70685 NaN 1 0 Median 2529100 1378900 1150200 0 0 0 2529100 1378900 1150200 7249 1648 7418 19207 30061 30061 1 KVDLETLK VECQSTSTVGGQSVKKVDLETLKEDSEFTK VGGQSVKKVDLETLKEDSEFTKVEMDNLDN K K V L K E 0 0 0 1 0 0 1 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 8 1 944.55425 Q96T23;H0YER1;H0YCN2 Q96T23 663 670 RSF1 Remodeling and spacing factor 1 yes no 2 0.0032786 104.2 1 0.41753 0.49296 NaN 1 Median 0.41753 0.49296 NaN 1 0 Median NaN NaN NaN 0 0 Median 46863000 28824000 18038000 46863000 28824000 18038000 0 0 0 7250 1991 7419 19208 30062;30063 30062 2 KVDVEEEFFALR DTPTSSKPQSKRSLRKVDVEEEFFALRKRT SLRKVDVEEEFFALRKRTPSAGKAMHTPKP R K V L R K 1 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 2 0 0 12 1 1480.7562 P46013 P46013 1517 1528 MKI67 Antigen KI-67 yes yes 2;3 0.00022417 64.224 1 3 3.6091 3.1211 18.168 4 Median 1.9456 2.2091 NaN 1 0 Median 3.6907 3.1366 2.6647 3 0 Median 101380000 23772000 77607000 17793000 5085700 12707000 83586000 18686000 64900000 7251 1569 7420 19209;19210;19211;19212 30064;30065;30066;30067;30068 30068 4 KVDVEEEFFALRK DTPTSSKPQSKRSLRKVDVEEEFFALRKRT LRKVDVEEEFFALRKRTPSAGKAMHTPKPA R K V R K R 1 1 0 1 0 0 3 0 0 0 1 2 0 2 0 0 0 0 0 2 0 0 13 2 1608.8512 P46013 P46013 1517 1529 MKI67 Antigen KI-67 yes yes 3 0.016305 36.445 2 3.6283 3.6438 1.5825 2 Median NaN NaN NaN 0 0 Median 3.6283 3.6438 1.5825 2 0 Median 39104000 8585700 30519000 0 0 0 39104000 8585700 30519000 7252 1569 7421 19213;19214 30069;30070 30069 2 KVDWLTEK TLTITQAVIFINTRRKVDWLTEKMHARDFT IFINTRRKVDWLTEKMHARDFTVSAMHGDM R K V E K M 0 0 0 1 0 0 1 0 0 0 1 2 0 0 0 0 1 1 0 1 0 0 8 1 1017.5495 A0A024R8W0;P38919;A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3QL43;B4DNH2;J3KSZ0;E7EQG2;Q14240;J3KTN0;B4DKP9;Q9NZE6;Q96B07;B4DJX6;J3QL52 A8K7F6 284 291 DDX48;EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.00066879 132.84 1 1 1.5562 1.5649 25.916 2 Median 1.5927 1.8796 NaN 1 0 Median 1.5204 1.3029 NaN 1 0 Median 121850000 53497000 68356000 113270000 49881000 63387000 8584400 3615800 4968600 7253 770;261 7422 19215;19216 30071;30072;30073 30071 3 KVEAPETNIDK SDPPLKRSLAQRLGKKVEAPETNIDKTPKK RLGKKVEAPETNIDKTPKKAQVSKSLKERL K K V D K T 1 0 1 1 0 0 2 0 0 1 0 2 0 0 1 0 1 0 0 1 0 0 11 1 1242.6456 B4DLG2;O75152;E9PQ61;E9PBY7;Q0D2N5 B4DLG2 256 266 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 4.63E-08 121.02 1 1 2.269 2.7011 NaN 1 Median 2.269 2.7011 NaN 1 0 Median NaN NaN NaN 0 0 Median 24402000 7274400 17128000 22556000 7274400 15281000 1846300 0 1846300 7254 996 7423 19217;19218 30074;30075 30074 2 KVEAQLQELQVK KVLLQGKGDSEHKRKKVEAQLQELQVKFNE KRKKVEAQLQELQVKFNEGERVRTELADKV K K V V K F 1 0 0 0 0 3 2 0 0 0 2 2 0 0 0 0 0 0 0 2 0 0 12 1 1411.8035 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1249 1260 MYH9 Myosin-9 yes no 2;3 9.259E-06 126.21 3 4 2.8531 2.4144 15.487 7 Median 1.6116 1.8688 5.2369 3 0 Median 2.9104 2.4986 3.9803 4 0 Median 349410000 126570000 222840000 311820000 116840000 194980000 37590000 9726800 27864000 7255 81 7424 19219;19220;19221;19222;19223;19224;19225 30076;30077;30078;30079;30080;30081;30082;30083;30084;30085;30086;30087 30077 12 KVEDLFLTFAK AARKKKLLEAQSHFRKVEDLFLTFAKKASA SHFRKVEDLFLTFAKKASAFNSWFENAEED R K V A K K 1 0 0 1 0 0 1 0 0 0 2 2 0 2 0 0 1 0 0 1 0 0 11 1 1309.7282 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 2073 2083 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0348 43.604 1 4.0103 3.4843 NaN 1 Median NaN NaN NaN 0 0 Median 4.0103 3.4843 NaN 1 0 Median 3392300 780340 2612000 0 0 0 3392300 780340 2612000 7256 523 7425 19226 30088 30088 1 KVEEAEPEEFVVEK TTLQKMGKKQNGKSKKVEEAEPEEFVVEKV KKVEEAEPEEFVVEKVLDRRVVNGKVEYFL K K V E K V 1 0 0 0 0 0 6 0 0 0 0 2 0 1 1 0 0 0 0 3 0 0 14 1 1660.8196 A4D177;Q13185;C9JMM0;B8ZZ43;S4R2Y4 A4D177 21 34 CBX3 Chromobox protein homolog 3 yes no 2;3 5.4735E-57 198.33 4 4 1.1477 1.1194 10.122 8 Median 1.0548 1.2372 3.449 4 0 Median 1.2139 1.027 1.3029 4 0 Median 1535800000 738060000 797740000 1169800000 571490000 598300000 366010000 166580000 199440000 7257 662 7426 19227;19228;19229;19230;19231;19232;19233;19234 30089;30090;30091;30092;30093;30094;30095;30096;30097;30098;30099;30100;30101;30102;30103;30104;30105;30106;30107 30092 19 KVEEEEDESALK SEYCRISNLIVLHLRKVEEEEDESALKRSE HLRKVEEEEDESALKRSELVNWYLKEIESE R K V L K R 1 0 0 1 0 0 5 0 0 0 1 2 0 0 0 1 0 0 0 1 0 0 12 1 1404.662 Q14566;Q4ZG57;B4DRF6 Q14566 733 744 MCM6 DNA replication licensing factor MCM6 yes no 2 3.9381E-61 213.38 2 1.3325 1.548 10.009 2 Median 1.3325 1.548 10.009 2 0 Median NaN NaN NaN 0 0 Median 30997000 12974000 18023000 30997000 12974000 18023000 0 0 0 7258 1734 7427 19235;19236 30108;30109;30110;30111 30110 4 KVEELQACVETAR TSVTQAQREKAELSRKVEELQACVETARQE SRKVEELQACVETARQEQHEAQAQVAELEL R K V A R Q 2 1 0 0 1 1 3 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 13 1 1531.7664 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 651 663 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 0.033811 13.791 1 1.2553 1.0781 NaN 1 Median NaN NaN NaN 0 0 Median 1.2553 1.0781 NaN 1 0 Median 2553200 1280800 1272400 0 0 0 2553200 1280800 1272400 7259 186;1747;718 7428 19237 30112;30113 30112 2 KVEETQDEDDDELIFVGEISSSK LFMECEEEELEPWQKKVEETQDEDDDELIF DDDELIFVGEISSSKPAISNILNRGHSSSS K K V S K P 0 0 0 4 0 1 5 1 0 2 1 2 0 1 0 3 1 0 0 2 0 0 23 1 2611.2025 Q8ND82;Q9UJJ2 Q8ND82 33 55 ZNF280C Zinc finger protein 280C yes no 3 0.013228 19.538 1 2.0359 1.7617 NaN 1 Median NaN NaN NaN 0 0 Median 2.0359 1.7617 NaN 1 0 Median 3808500 1396800 2411700 0 0 0 3808500 1396800 2411700 7260 1924 7429 19238 30114;30115 30115 2 KVEEVLEEEEEEYVVEK ______________________________ EEVLEEEEEEYVVEKVLDRRVVKGKVEYLL K K V E K V 0 0 0 0 0 0 9 0 0 0 1 2 0 0 0 0 0 0 1 4 0 0 17 1 2108.0049 B5MD17;J3KS05;Q6IBN6;P83916;K7ELA4;C9JWS9 B5MD17 9 25 CBX1 Chromobox protein homolog 1 yes no 3 3.1618E-05 44.089 2 0.70173 0.59645 19.004 2 Median NaN NaN NaN 0 0 Median 0.70173 0.59645 19.004 2 0 Median 26936000 13220000 13716000 0 0 0 26936000 13220000 13716000 7261 1081 7430 19239;19240 30116;30117 30117 2 KVELSESEEDK GTEKRESPSPAPKPRKVELSESEEDKGGKM PKPRKVELSESEEDKGGKMAAADSVQQRRQ R K V D K G 0 0 0 1 0 0 4 0 0 0 1 2 0 0 0 2 0 0 0 1 0 0 11 1 1291.6143 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;E9PCT1;M0R088 A0A0S2Z4W1 459 469 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2 0.00057427 85.958 1 1.0346 1.1815 NaN 1 Median 1.0346 1.1815 NaN 1 0 Median NaN NaN NaN 0 0 Median 6670800 3286600 3384200 6670800 3286600 3384200 0 0 0 7262 570 7431 19241 30118 30118 1 KVEPSDPVAR RSVQRKVSPASGVSKKVEPSDPVARRVYLT SGVSKKVEPSDPVARRVYLTTQLKQKKSTL K K V A R R 1 1 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 10 1 1096.5877 A0A024R0F1;Q9UNY4 A0A024R0F1 404 413 TTF2 Transcription termination factor 2 yes no 2 0.002611 79.986 2 2 1.501 1.2614 1.5899 2 Median NaN NaN NaN 0 0 Median 1.501 1.2614 1.5899 2 0 Median 36167000 5769600 30397000 20955000 0 20955000 15212000 5769600 9442300 7263 44 7432 19242;19243;19244;19245 30119;30120;30121;30122;30123 30120 5 KVEPVPVTK EQVIKESDASKIPGKKVEPVPVTKQPTPPS SKIPGKKVEPVPVTKQPTPPSEAAASKKKP K K V T K Q 0 0 0 0 0 0 1 0 0 0 0 2 0 0 2 0 1 0 0 3 0 0 9 1 995.60153 A0A024R663;Q86UP2 A0A024R663 142 150 KTN1 Kinectin yes no 2 0.0030746 80.231 1 0.36711 0.42691 NaN 1 Median 0.36711 0.42691 NaN 1 0 Median NaN NaN NaN 0 0 Median 11318000 8274100 3044100 11318000 8274100 3044100 0 0 0 7264 197 7433 19246 30124 30124 1 KVEQPVIEEPALK DDPKASAKKKMKSKKKVEQPVIEEPALKRK KKKVEQPVIEEPALKRKKKKKRKESGVAGD K K V L K R 1 0 0 0 0 1 3 0 0 1 1 2 0 0 2 0 0 0 0 2 0 0 13 1 1478.8344 Q1ED39;H3BPL4 Q1ED39 275 287 KNOP1 Lysine-rich nucleolar protein 1 yes no 2;3 0.0092825 62.408 2 1.5305 1.7435 NaN 1 Median 1.5305 1.7435 NaN 1 0 Median NaN NaN NaN 0 0 Median 9781900 3847400 5934500 9781900 3847400 5934500 0 0 0 7265 1775 7434 19247;19248 30125;30126 30125 2 KVESLQEEIAFLK QDVDNASLARLDLERKVESLQEEIAFLKKL ERKVESLQEEIAFLKKLHEEEIQELQAQIQ R K V L K K 1 0 0 0 0 1 3 0 0 1 2 2 0 1 0 1 0 0 0 1 0 0 13 1 1532.845 V9HWE1;P08670;B0YJC4;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 223 235 HEL113;VIM Vimentin yes no 2;3 3.8892E-19 161.48 3 1 1.5206 1.7597 59.907 3 Plateau 1.5206 1.7597 59.907 3 0 Plateau NaN NaN NaN 0 0 Median 144430000 36604000 107830000 96149000 36604000 59545000 48281000 0 48281000 7266 1457 7435 19249;19250;19251;19252 30127;30128;30129;30130;30131;30132 30128 6 KVESTGAVPEFK QPDFFLDEYPEAVSKKVESTGAVPEFKEEK VSKKVESTGAVPEFKEEKLQLQPKPRSGAV K K V F K E 1 0 0 0 0 0 2 1 0 0 0 2 0 1 1 1 1 0 0 2 0 0 12 1 1290.682 B2R923;A0A024R159;Q6YN16;B4DWC7;B4E136 B2R923 211 222 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 0.0011327 67.456 2 2.3775 2.7804 2.2313 2 Median 2.3775 2.7804 2.2313 2 0 Median NaN NaN NaN 0 0 Median 52523000 15183000 37340000 52523000 15183000 37340000 0 0 0 7267 70 7436 19253;19254 30133;30134 30133 2 KVETDHIVAAVGLEPNVELAK GVSSGKLLIKLKDGRKVETDHIVAAVGLEP IVAAVGLEPNVELAKTGGLEIDSDFGGFRV R K V A K T 3 0 1 1 0 0 3 1 1 1 2 2 0 0 1 0 1 0 0 4 0 0 21 1 2231.2161 O95831;A0A140VK04;E9PMA0 O95831 388 408 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 4 0.052431 7.1142 1 1.4226 1.2479 NaN 1 Median NaN NaN NaN 0 0 Median 1.4226 1.2479 NaN 1 0 Median 2817800 1175200 1642600 0 0 0 2817800 1175200 1642600 7268 1431 7437 19255 30135;30136 30136 2 KVGLIAAR IGKPSTIRRDAPAGRKVGLIAARRTGRLRG RDAPAGRKVGLIAARRTGRLRGTKTVQEKE R K V A R R 2 1 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 1 826.53887 P62917;B4DVG7;E9PKU4;E9PP36 P62917 234 241 RPL8 60S ribosomal protein L8 yes no 2 0.0030972 105.2 2 0.69098 0.81323 6.2822 2 Median 0.69098 0.81323 6.2822 2 0 Median NaN NaN NaN 0 0 Median 89015000 57002000 32013000 89015000 57002000 32013000 0 0 0 7269 1653 7438 19256;19257 30137;30138 30138 2 KVIQYLAYVASSHK LCTGESGAGKTENTKKVIQYLAYVASSHKS KKVIQYLAYVASSHKSKKDQGELERQLLQA K K V H K S 2 0 0 0 0 1 0 0 1 1 1 2 0 0 0 2 0 0 2 2 0 0 14 1 1605.8879 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;Q9UMJ0 A0A024R1N1 186 199 MYH9 Myosin-9 yes no 3 0.0105 27.767 1 3.0833 2.6673 NaN 1 Median NaN NaN NaN 0 0 Median 3.0833 2.6673 NaN 1 0 Median 3926300 714860 3211500 0 0 0 3926300 714860 3211500 7270 81 7439 19258 30139 30139 1 KVMHLQDVEVK EKLLKSQRNLVAKMKKVMHLQDVEVKNATQ AKMKKVMHLQDVEVKNATQWKDKIKSQRMR K K V V K N 0 0 0 1 0 1 1 0 1 0 1 2 1 0 0 0 0 0 0 3 0 0 11 1 1324.7173 H7C0Q6;B4DEC5;B3KS62;Q9C037 H7C0Q6 49 59 TRIM4 E3 ubiquitin-protein ligase TRIM4 yes no 2 0.01056 43.512 1 2 2.1494 2.5346 NaN 1 Median 2.1494 2.5346 NaN 1 0 Median NaN NaN NaN 0 0 Median 619350000 178520000 440830000 550600000 178520000 372080000 68753000 0 68753000 7271 937 7440 19259;19260;19261 30140;30141;30142 30140 766 2 KVPGVTAIELDEDTGTFR GLAIGTHGSNIQQARKVPGVTAIELDEDTG GVTAIELDEDTGTFRIYGESADAVKKARGF R K V F R I 1 1 0 2 0 0 2 2 0 1 1 1 0 1 1 0 3 0 0 2 0 0 18 1 1946.9949 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 246 263 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 1.7267E-05 52.298 2 1 1.12 1.2694 13.152 3 Plateau 1.067 1.207 9.3516 2 0 Median 1.1719 0.99127 NaN 1 0 Median 57912000 27650000 30262000 47101000 22552000 24550000 10811000 5098500 5712700 7272 531 7441 19262;19263;19264 30143;30144;30145;30146;30147;30148 30145 6 KVPPSLLCEINTNAR SSDGFIKMWKLKQDKKVPPSLLCEINTNAR KVPPSLLCEINTNARLTCLGVWLDKVADMK K K V A R L 1 1 2 0 1 0 1 0 0 1 2 1 0 0 2 1 1 0 0 1 0 0 15 1 1710.9087 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 281 295 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 3 0.00078472 42.947 2 2 1.3211 1.0994 23.436 4 Median 1.1519 1.3017 36.796 2 0 Median 1.3211 1.0994 2.8918 2 0 Median 56197000 22985000 33212000 44815000 18025000 26790000 11382000 4959900 6422400 7273 580 7442 19265;19266;19267;19268 30149;30150;30151;30152;30153;30154;30155;30156;30157 30154 8 KVPVSVNLLSK RLLPSLIGRHFYQRKKVPVSVNLLSKNLSR YQRKKVPVSVNLLSKNLSREINDCIGGTVL K K V S K N 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 2 0 0 0 3 0 0 11 1 1182.7336 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3C4 O76021 178 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 0.0022712 68.132 3 1 0.69082 0.76739 11.056 4 Median 0.69072 0.79029 4.5492 3 0 Median 0.73997 0.63572 NaN 1 0 Median 1278500000 728290000 550240000 1091900000 617040000 474810000 186680000 111250000 75427000 7274 1415 7443 19269;19270;19271;19272 30158;30159;30160;30161;30162 30160 5 KVQDGLSDIAEK ETKEKSKHLKTKTCKKVQDGLSDIAEKFLK TCKKVQDGLSDIAEKFLKKDQSDETSEDDK K K V E K F 1 0 0 2 0 1 1 1 0 1 1 2 0 0 0 1 0 0 0 1 0 0 12 1 1301.6827 A4LAA3;P46100;A0A096LNW1;A0A096LNL9;B7Z1D8 A4LAA3 956 967 ATRX Transcriptional regulator ATRX yes no 2 0.00013807 96.82 1 2 1.3859 1.1986 4.9687 2 Median NaN NaN NaN 0 0 Median 1.3859 1.1986 4.9687 2 0 Median 9706300 5766000 3940300 2944600 2944600 0 6761700 2821400 3940300 7275 672 7444 19273;19274;19275 30163;30164;30165;30166;30167 30167 5 KVQFDGTNSAFK KYNVSTTPYLQSVKKKVQFDGTNSAFKELK VKKKVQFDGTNSAFKELKFLTPVRRSRRLQ K K V F K E 1 0 1 1 0 1 0 1 0 0 0 2 0 2 0 1 1 0 0 1 0 0 12 1 1340.6725 B2RMQ4;Q8WWK9 B2RMQ4 605 616 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.029404 41.399 1 1.428 1.2306 NaN 1 Median NaN NaN NaN 0 0 Median 1.428 1.2306 NaN 1 0 Median 5713000 2026500 3686500 0 0 0 5713000 2026500 3686500 7276 895 7445 19276 30168 30168 1 KVQTEVLQK SEKAKQLRALRKYGKKVQTEVLQKRQQEKA LRKYGKKVQTEVLQKRQQEKAHMMNAIKKY K K V Q K R 0 0 0 0 0 2 1 0 0 0 1 2 0 0 0 0 1 0 0 2 0 0 9 1 1071.6288 Q6IB29;H7C2Q8;Q99848 Q6IB29 179 187 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 7.1411E-58 213.98 2 2 1.0066 0.99782 19.647 4 Median 1.0198 1.1936 6.3866 2 0 Median 1.0066 0.85545 2.8264 2 0 Median 221280000 110360000 110920000 144270000 70977000 73293000 77014000 39385000 37629000 7277 1316 7446 19277;19278;19279;19280 30169;30170;30171;30172;30173;30174;30175;30176 30176 8 KVSEMEQLK HQLITLKKDVNETQKKVSEMEQLKKQIKDQ VNETQKKVSEMEQLKKQIKDQSLTLSKLEI K K V L K K 0 0 0 0 0 1 2 0 0 0 1 2 1 0 0 1 0 0 0 1 0 0 9 1 1090.5692 A0A087X0P0;Q02224 A0A087X0P0 1845 1853 CENPE Kinesin-like protein;Centromere-associated protein E yes no 2 0.043183 41.448 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7278 445 7447 19281 30177 30177 314 1 KVSGTLDTPEK RQTSTKGQVLRKKKKKVSGTLDTPEKTVDS KKKKKVSGTLDTPEKTVDSQGPTPVCTPTF K K V E K T 0 0 0 1 0 0 1 1 0 0 1 2 0 0 1 1 2 0 0 1 0 0 11 1 1173.6241 Q9BYG3;C9J808;H7BZL0 Q9BYG3 216 226 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 1.6384E-05 108.9 1 2 1.3721 1.1573 14.677 3 Median 0.80555 0.92235 NaN 1 0 Median 1.3958 1.1853 3.3788 2 0 Median 39143000 17699000 21444000 19292000 9603800 9688100 19851000 8094900 11756000 7279 2019 7448 19282;19283;19284 30178;30179;30180;30181;30182 30181 5 KVTEELLTDNR TLNFKMGNRHKFTGKKVTEELLTDNRYLLL FTGKKVTEELLTDNRYLLLVLMDAERAWSY K K V N R Y 0 1 1 1 0 0 2 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 11 1 1316.6936 Q9UHB9;B4DVI7;B3KMI9 Q9UHB9 112 122 SRP68 Signal recognition particle subunit SRP68 yes no 2 0.0016566 70.942 2 0.87106 0.9638 6.8838 2 Median 0.87106 0.9638 6.8838 2 0 Median NaN NaN NaN 0 0 Median 26203000 13859000 12344000 26203000 13859000 12344000 0 0 0 7280 2101 7449 19285;19286 30183;30184;30185;30186;30187;30188 30183 6 KVTFGLNR PGPAVQLNKTPSSSKKVTFGLNRNMTAEFK KTPSSSKKVTFGLNRNMTAEFKKTDKSILV K K V N R N 0 1 1 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 8 1 933.5396 Q14684 Q14684 683 690 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.028404 60.76 1 1.6082 1.3522 NaN 1 Median NaN NaN NaN 0 0 Median 1.6082 1.3522 NaN 1 0 Median 7302000 2986300 4315600 0 0 0 7302000 2986300 4315600 7281 1740 7450 19287 30189 30189 1 KVTGELAFDTSSADVR YWEMMPPTILIDLLKKVTGELAFDTSSADV VTGELAFDTSSADVRCSVFKCLPMILDNKL K K V V R C 2 1 0 2 0 0 1 1 0 0 1 1 0 1 0 2 2 0 0 2 0 0 16 1 1694.8475 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 422 437 NCAPG2 Condensin-2 complex subunit G2 yes no 2;3 0.0016652 47.915 3 1.885 1.5769 1.9419 2 Median NaN NaN NaN 0 0 Median 1.885 1.5769 1.9419 2 0 Median 8264100 2404000 5860000 0 0 0 8264100 2404000 5860000 7282 1887 7451 19288;19289;19290 30190;30191;30192 30190 3 KVTLGDTLTR SVEVALPPPAEHEVKKVTLGDTLTRRSISQ EHEVKKVTLGDTLTRRSISQQKSGVSITID K K V T R R 0 1 0 1 0 0 0 1 0 0 2 1 0 0 0 0 3 0 0 1 0 0 10 1 1102.6346 G3V3B0;Q69YJ6;S4R3H4;E7EQT4;Q9UKV3;B4DQZ7 G3V3B0 211 220 ACIN1;DKFZp667N107 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.0086582 60.518 2 1.0777 1.2686 3.1921 2 Median 1.0777 1.2686 3.1921 2 0 Median NaN NaN NaN 0 0 Median 101060000 48526000 52533000 101060000 48526000 52533000 0 0 0 7283 1220 7452 19291;19292 30193;30194;30195 30194 3 KVTLGTQPTVLR YFGLNIETGLLSDRKKVTLGTQPTVLRTFR DRKKVTLGTQPTVLRTFRSLSTTNVFACSD K K V L R T 0 1 0 0 0 1 0 1 0 0 2 1 0 0 1 0 3 0 0 2 0 0 12 1 1311.7874 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 628 639 DDB1 DNA damage-binding protein 1 yes no 3 0.0053558 27.676 1 0.83754 0.98633 NaN 1 Median 0.83754 0.98633 NaN 1 0 Median NaN NaN NaN 0 0 Median 34109000 17420000 16689000 34109000 17420000 16689000 0 0 0 7284 1770 7453 19293 30196 30196 1 KVTMINAIPVASLDPIK LKNFDMVIVYKDYSKKVTMINAIPVASLDP TMINAIPVASLDPIKEWLNSCDLKYTEGVQ K K V I K E 2 0 1 1 0 0 0 0 0 3 1 2 1 0 2 1 1 0 0 2 0 0 17 1 1809.0434 Q9Y5B9 Q9Y5B9 867 883 SUPT16H FACT complex subunit SPT16 yes yes 3 0.053642 15.984 1 0.86358 0.74141 NaN 1 Median NaN NaN NaN 0 0 Median 0.86358 0.74141 NaN 1 0 Median 7473200 4123100 3350100 0 0 0 7473200 4123100 3350100 7285 2148 7454 19294 30197 30197 0 KVTSVVFHPSQDLVFSASPDATIR KSSEQILATLKGHTKKVTSVVFHPSQDLVF SQDLVFSASPDATIRIWSVPNASCVQVVRA K K V I R I 2 1 0 2 0 1 0 0 1 1 1 1 0 2 2 4 2 0 0 4 0 0 24 1 2600.3599 Q9UMS4 Q9UMS4 266 289 PRPF19 Pre-mRNA-processing factor 19 yes yes 4 0.00051795 30.223 2 1.0537 0.88621 NaN 1 Median NaN NaN NaN 0 0 Median 1.0537 0.88621 NaN 1 0 Median 11040000 3673000 7367300 0 0 0 11040000 3673000 7367300 7286 2114 7455 19295;19296 30198;30199;30200;30201 30200 4 KVVEAVNSDSDSEFGIPK SSDTVPKPKRAPKQKKVVEAVNSDSDSEFG EAVNSDSDSEFGIPKKTTTPKGKGRGAKKR K K V P K K 1 0 1 2 0 0 2 1 0 1 0 2 0 1 1 3 0 0 0 3 0 0 18 1 1919.9476 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5 Q71UH4 1487 1504 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 0.029718 8.3765 1 1.728 1.4998 NaN 1 Median NaN NaN NaN 0 0 Median 1.728 1.4998 NaN 1 0 Median 1193200 463870 729340 0 0 0 1193200 463870 729340 7287 1679 7456 19297 30202 30202 1 KVVESGGPEILK VSFMSQLLSSNNFLKKVVESGGPEILKGLE FLKKVVESGGPEILKGLEERLLETVLGYIS K K V L K G 0 0 0 0 0 0 2 2 0 1 1 2 0 0 1 1 0 0 0 2 0 0 12 1 1254.7184 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1533 1544 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 4.6091E-05 100.04 1 2 1.3174 1.3883 12.393 3 Plateau 1.1976 1.4026 NaN 1 0 Median 1.3235 1.1316 0.048656 2 0 Median 25544000 10841000 14703000 13015000 5714700 7300700 12528000 5126500 7401800 7288 897 7457 19298;19299;19300 30203;30204;30205 30205 3 KVVNPLFEK KVAPAPAVVKKQEAKKVVNPLFEKRPKNFG KKQEAKKVVNPLFEKRPKNFGIGQDIQPKR K K V E K R 0 0 1 0 0 0 1 0 0 0 1 2 0 1 1 0 0 0 0 2 0 0 9 1 1072.6281 P62424;Q5T8U3 P62424 26 34 RPL7A 60S ribosomal protein L7a yes no 2 3.3014E-08 132.38 3 1.1069 1.283 NaN 1 Median 1.1069 1.283 NaN 1 0 Median NaN NaN NaN 0 0 Median 104270000 30709000 73563000 104270000 30709000 73563000 0 0 0 7289 1648 7458 19301;19302;19303 30206;30207;30208;30209 30207 4 KVYENYPTYDLTER ASANLEEVTMKQICKKVYENYPTYDLTERK KKVYENYPTYDLTERKDFIKTTVKELIS__ K K V E R K 0 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 2 0 3 1 0 0 14 1 1789.8523 B4DNW3;H0Y993;Q6MZJ9;P35659;B4DFG0 P35659 349 362 DEK;DKFZp686A24118 Protein DEK no no 3 0.020873 22.475 1 0.91884 0.76324 NaN 1 Median NaN NaN NaN 0 0 Median 0.91884 0.76324 NaN 1 0 Median 3700800 1941300 1759500 0 0 0 3700800 1941300 1759500 7290 1546;1018 7459 19304 30210;30211 30210 2 KWGFTK AKFKFPGRQKIHISKKWGFTKFNADEFEDM GRQKIHISKKWGFTKFNADEFEDMVAEKRL K K W T K F 0 0 0 0 0 0 0 1 0 0 0 2 0 1 0 0 1 1 0 0 0 0 6 1 765.41736 F8W7C6;A0A087WV22;X5D7P1;X1WI28;X5D2T3;P27635;Q96L21 X1WI28 170 175 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like no no 2 0.039097 131.3 1 0.85628 1.0107 NaN 1 Median 0.85628 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median 85495000 44879000 40616000 85495000 44879000 40616000 0 0 0 7291 1524;1266 7460 19305 30212 30212 1 KWGVPIEK KLNYLDPRITVAWCKKWGVPIEKIYNKTQR ITVAWCKKWGVPIEKIYNKTQREKFAWAID K K W E K I 0 0 0 0 0 0 1 1 0 1 0 2 0 0 1 0 0 1 0 1 0 0 8 1 955.5491 P11387;B9EG90;Q9BVT2 P11387 735 742 TOP1 DNA topoisomerase 1 yes no 2 0.010218 88.37 1 1 0.95021 1.1068 NaN 1 Median 0.95021 1.1068 NaN 1 0 Median NaN NaN NaN 0 0 Median 242260000 122510000 119750000 225820000 122510000 103310000 16443000 0 16443000 7292 1470 7461 19306;19307 30213;30214;30215 30213 3 KYAPTEAQLNAVDALIDSMSLAK EDLRQYMFSSLKNSKKYAPTEAQLNAVDAL LNAVDALIDSMSLAKKDEKTDTLEDLFPTT K K Y A K K 5 0 1 2 0 1 1 0 0 1 3 2 1 0 1 2 1 0 1 1 0 0 23 1 2448.257 P13010;Q53T09 P13010 443 465 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 4.8316E-09 66.017 2 0.17973 0.15265 8.0015 2 Median NaN NaN NaN 0 0 Median 0.17973 0.15265 8.0015 2 0 Median 24937000 20318000 4619700 0 0 0 24937000 20318000 4619700 7293 1476 7462 19308;19309 30216;30217 30217 1222 2 KYCQVIR EDGKKQLEKDFSSMKKYCQVIRVIAHTQMR EKDFSSMKKYCQVIRVIAHTQMRLLPLRQK K K Y I R V 0 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 1 965.51167 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;H7C3M2;B5MCW2 P39023 155 161 RPL3;rpl3 60S ribosomal protein L3 yes no 2 0.045811 60.799 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6879900 0 6879900 0 0 0 6879900 0 6879900 7294 1554 7463 19310 30218 30218 1 KYDAFLASESLIK KKLNKNKKLVKKLAKKYDAFLASESLIKQI AKKYDAFLASESLIKQIPRILGPGLNKAGK K K Y I K Q 2 0 0 1 0 0 1 0 0 1 2 2 0 1 0 2 0 0 1 0 0 0 13 1 1483.7922 P62906;Q1JQ76;A0A024RCW3 P62906 106 118 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 1.1504E-89 238.13 2 2 0.9904 0.98765 11.237 4 Median 0.93016 1.0918 0.88022 2 0 Median 1.0569 0.89886 0.03038 2 0 Median 834940000 418970000 415970000 707910000 358140000 349770000 127030000 60821000 66207000 7295 1651 7464 19311;19312;19313;19314 30219;30220;30221;30222;30223;30224;30225;30226;30227;30228;30229;30230;30231;30232 30222 14 KYDTVLDILR TCNSMVLFDHVGCLKKYDTVLDILRDFFEL VGCLKKYDTVLDILRDFFELRLKYYGLRKE K K Y L R D 0 1 0 2 0 0 0 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 10 1 1234.6921 P11388 P11388 1011 1020 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 1.8424E-51 201.84 3 2 0.97404 0.98874 17.511 4 Median 0.71589 0.86014 0.10001 2 0 Median 1.3186 1.1628 3.3234 2 0 Median 1078600000 583170000 495450000 782230000 454480000 327750000 296390000 128680000 167700000 7296 1471 7465 19315;19316;19317;19318;19319 30233;30234;30235;30236;30237;30238;30239;30240;30241;30242 30239 10 KYEDICPSTHNMDVPNIK HAKVHLVGIDIFTGKKYEDICPSTHNMDVP DICPSTHNMDVPNIKRNDFQLIGIQDGYLS K K Y I K R 0 0 2 2 1 0 1 0 1 2 0 2 1 0 2 1 1 0 1 1 0 0 18 1 2159.998 I3L397;I3L504;P63241;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 68 85 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like yes no 3 5.5578E-10 99.891 2 4.9113 5.7379 11.894 2 Median 4.9113 5.7379 11.894 2 0 Median NaN NaN NaN 0 0 Median 85962000 13502000 72460000 85962000 13502000 72460000 0 0 0 7297 1322 7466 19320;19321 30243;30244;30245 30244 1000 3 KYEEIDNAPEER AITKILAEGGGAKFKKYEEIDNAPEERARG KFKKYEEIDNAPEERARGITINAAHVEYST K K Y E R A 1 1 1 1 0 0 4 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 12 1 1491.6842 P49411 P49411 91 102 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 1.902E-59 203.61 4 3 1.4462 1.4554 44.319 6 Median 1.6992 2.0035 24.327 3 0 Median 1.2898 1.0567 6.2785 3 0 Median 311540000 104160000 207380000 299380000 99028000 200350000 12162000 5130600 7031300 7298 1580 7467 19322;19323;19324;19325;19326;19327;19328 30246;30247;30248;30249;30250;30251;30252;30253;30254;30255;30256;30257 30248 12 KYELGRPAANTK RRKTGGKRKPYHKKRKYELGRPAANTKIGP KKRKYELGRPAANTKIGPRRIHTVRVRGGN R K Y T K I 2 1 1 0 0 0 1 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 12 2 1346.7306 Q5JR94;P62241;Q5JR95 Q5JR94 26 37 RPS8 40S ribosomal protein S8 yes no 3 0.011671 45.28 1 0.61704 0.79582 NaN 1 Median 0.61704 0.79582 NaN 1 0 Median NaN NaN NaN 0 0 Median 20762000 12199000 8563000 20762000 12199000 8563000 0 0 0 7299 1635 7468 19329 30258 30258 1 KYEPPVPTR HGPGGGKKDDKDKKKKYEPPVPTRVGKKKK DKDKKKKYEPPVPTRVGKKKKKTKGPDAAS K K Y T R V 0 1 0 0 0 0 1 0 0 0 0 1 0 0 3 0 1 0 1 1 0 0 9 1 1085.5869 Q53XL8;Q53HB3;P62191 Q53XL8 24 32 PSMC1 26S protease regulatory subunit 4 yes no 2 0.0067758 70.256 2 2.4333 2.8346 15.575 2 Median 2.4333 2.8346 15.575 2 0 Median NaN NaN NaN 0 0 Median 62445000 17651000 44795000 62445000 17651000 44795000 0 0 0 7300 1634 7469 19330;19331 30259;30260;30261 30261 3 KYEQGFITDPVVLSPK NCTPEFQANEVRKVKKYEQGFITDPVVLSP YEQGFITDPVVLSPKDRVRDVFEAKARHGF K K Y P K D 0 0 0 1 0 1 1 1 0 1 1 2 0 1 2 1 1 0 1 2 0 0 16 1 1819.972 H0Y4R1;P12268;B7Z1G4;Q6QE17 H0Y4R1 41 56 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 2.0419E-05 93.243 6 2 1.2326 1.2483 13.391 5 Median 1.2326 1.4298 7.881 3 0 Plateau 1.2974 1.1023 6.0107 2 0 Median 189790000 84433000 105360000 169550000 75189000 94357000 20245000 9243900 11001000 7301 1282 7470 19332;19333;19334;19335;19336;19337;19338;19339 30262;30263;30264;30265;30266;30267;30268;30269;30270;30271;30272;30273;30274 30262 13 KYETVIMPVFGIATPFHIATIK PKEPHIREMKIYIDKKYETVIMPVFGIATP PVFGIATPFHIATIKNISMSVEGDYTYLRI K K Y I K N 2 0 0 0 0 0 1 1 1 4 0 2 1 2 2 0 3 0 1 2 0 0 22 1 2475.36 Q9Y5B9 Q9Y5B9 534 555 SUPT16H FACT complex subunit SPT16 yes yes 3;4 1.8644E-29 129.9 2 6 0.82059 0.69646 39.73 8 Median 1.0518 1.2298 0.81252 2 0 Median 0.63234 0.53733 28.916 6 0 Median 297800000 159700000 138100000 91813000 44288000 47525000 205990000 115410000 90574000 7302 2148 7471;7472 19340;19341;19342;19343;19344;19345;19346;19347 30275;30276;30277;30278;30279;30280;30281;30282;30283;30284;30285;30286;30287 30276 1993 13 KYETVQDILK TCNSMVLFDHMGCLKKYETVQDILKEFFDL MGCLKKYETVQDILKEFFDLRLSYYGLRKE K K Y L K E 0 0 0 1 0 1 1 0 0 1 1 2 0 0 0 0 1 0 1 1 0 0 10 1 1235.6762 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6;H7BZ82 Q71UH4 1004 1013 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.0015464 97.813 2 2 0.61719 0.61025 29.441 2 Median 0.4285 0.49556 NaN 1 0 Median 0.88897 0.75148 NaN 1 0 Median 76065000 58771000 17294000 56654000 45418000 11236000 19411000 13352000 6058300 7303 1679 7473 19348;19349;19350;19351 30288;30289;30290;30291;30292 30288 4 KYEVADVGIEVK HSDSKHDGTSNSPSKKYEVADVGIEVKVTK PSKKYEVADVGIEVKVTKNFSLHRCNKCGK K K Y V K V 1 0 0 1 0 0 2 1 0 1 0 2 0 0 0 0 0 0 1 3 0 0 12 1 1348.7238 Q2TB10;B7Z4V7 Q2TB10 599 610 ZNF800 Zinc finger protein 800 yes no 2 3.3264E-05 103.46 2 1.6696 1.4182 4.9847 2 Median NaN NaN NaN 0 0 Median 1.6696 1.4182 4.9847 2 0 Median 18713000 7460700 11253000 0 0 0 18713000 7460700 11253000 7304 1777 7474 19352;19353 30293;30294;30295 30293 3 KYNPDSGLEVLAVQR TGIKYVVDTGMVKAKKYNPDSGLEVLAVQR KYNPDSGLEVLAVQRVSKTQAWQRTGRAGR K K Y Q R V 1 1 1 1 0 1 1 1 0 0 2 1 0 0 1 1 0 0 1 2 0 0 15 1 1687.8893 B4DIS6;Q9H6R0;I3L1L6;Q9NPV4 B4DIS6 438 452 DHX33;DKFZp762F2011 Putative ATP-dependent RNA helicase DHX33 yes no 3 0.00015765 53.403 2 1.4735 1.2467 7.2403 2 Median NaN NaN NaN 0 0 Median 1.4735 1.2467 7.2403 2 0 Median 6251000 2302000 3949000 0 0 0 6251000 2302000 3949000 7305 983 7475 19354;19355 30296;30297;30298;30299 30296 4 KYQEQLVQEQELAK AVDKQLASELEYDMKKYQEQLVQEQELAKH KKYQEQLVQEQELAKHADVAGTAGGAEVAP K K Y A K H 1 0 0 0 0 4 3 0 0 0 2 2 0 0 0 0 0 0 1 1 0 0 14 1 1732.8996 P42695;Q96FA6;E9PQA3 P42695 1258 1271 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.029607 35.523 1 1.9278 1.6537 NaN 1 Median NaN NaN NaN 0 0 Median 1.9278 1.6537 NaN 1 0 Median 3960700 1332600 2628200 0 0 0 3960700 1332600 2628200 7306 1565 7476 19356 30300 30300 0 KYSLPSK TGENAPWVVEDELVKKYSLPSKFSDFLLDP VVEDELVKKYSLPSKFSDFLLDPYKYMTLN K K Y S K F 0 0 0 0 0 0 0 0 0 0 1 2 0 0 1 2 0 0 1 0 0 0 7 1 821.4647 Q9UIG0 Q9UIG0 281 287 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.039289 63.961 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37972000 0 37972000 37972000 0 37972000 0 0 0 7307 2103 7477 19357 30301 30301 1 KYVIYIER YKGQQIGKVVQVYRKKYVIYIERVQREKAN VVQVYRKKYVIYIERVQREKANGTTVHVGI K K Y E R V 0 1 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 8 1 1082.6124 Q6IBH6;P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KTJ8;J3KS10;E5RIT6;Q9UNX3 Q6IBH6 77 84 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 no no 2 0.047994 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8288000 0 8288000 8288000 0 8288000 0 0 0 7308 1629;1214 7478 19358 30302 30302 1 KYVTDIQPSEQNESNINK GNLCDYGTHNILDLKKYVTDIQPSEQNESN TDIQPSEQNESNINKLRKKVNRKTEIISGM K K Y N K L 0 0 3 1 0 2 2 0 0 2 0 2 0 0 1 2 1 0 1 1 0 0 18 1 2106.0229 Q562F6;B7Z7S9 Q562F6 594 611 SGOL2 Shugoshin-like 2 yes no 3 0.016302 20.596 2 1.9945 1.7632 0.27927 2 Median NaN NaN NaN 0 0 Median 1.9945 1.7632 0.27927 2 0 Median 3318300 1099100 2219200 0 0 0 3318300 1099100 2219200 7309 1795 7479 19359;19360 30303;30304;30305 30304 3 LAAAILGGVDQIHIK DDKIEYRAWNPFRSKLAAAILGGVDQIHIK LAAAILGGVDQIHIKPGAKVLYLGAASGTT K L A I K P 3 0 0 1 0 1 0 2 1 3 2 1 0 0 0 0 0 0 0 1 0 0 15 0 1517.893 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0;A6NHQ2 Q96BS4 83 97 FBL;FBLL1 rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 no no 2;3 4.9393E-05 90.913 4 4 0.86167 0.88082 4.1837 8 Median 0.77025 0.88961 1.0617 4 0 Median 0.99455 0.84771 5.0684 4 0 Median 1632600000 905720000 726880000 1326700000 751390000 575360000 305850000 154340000 151520000 7310 1506;683 7480 19361;19362;19363;19364;19365;19366;19367;19368 30306;30307;30308;30309;30310;30311;30312;30313;30314;30315;30316;30317;30318;30319;30320;30321;30322;30323;30324 30322 19 LAAAILGGVDQIHIKPGAK DDKIEYRAWNPFRSKLAAAILGGVDQIHIK ILGGVDQIHIKPGAKVLYLGAASGTTVSHV K L A A K V 4 0 0 1 0 1 0 3 1 3 2 2 0 0 1 0 0 0 0 1 0 0 19 1 1871.0993 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 83 101 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3 2.4462E-06 79.97 1 4 0.98927 0.83804 1.63 3 Median NaN NaN NaN 0 0 Median 0.98927 0.83804 1.63 3 0 Median 125040000 59189000 65847000 0 0 0 125040000 59189000 65847000 7311 1506 7481 19369;19370;19371;19372;19373 30325;30326;30327;30328;30329;30330;30331 30329 7 LAAAVFSLAIK QPSTLTDKWYGESQKLAAAVFSLAIKLQPS ESQKLAAAVFSLAIKLQPSIIFIDEIDSFL K L A I K L 4 0 0 0 0 0 0 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1102.675 Q8NBU5;B4E2J1 Q8NBU5 173 183 ATAD1 ATPase family AAA domain-containing protein 1 yes no 2 2.5334E-09 118.18 3 1 2.0575 2.1524 NaN 1 Median 2.0575 2.1524 NaN 1 0 Median NaN NaN NaN 0 0 Median 16163000 2884300 13278000 16163000 2884300 13278000 0 0 0 7312 1920 7482 19374;19375;19376;19377 30332;30333;30334;30335;30336 30333 5 LAADDFR TTDNANILLQIDNARLAADDFRLKYENEVA LLQIDNARLAADDFRLKYENEVALRQSVEA R L A F R L 2 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 806.39227 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__Q92764;C4AM86;CON__Q497I4;A0A024R1T2;Q92764;CON__Q14532;CON__A2AB72;CON__O76015;CON__O76013;O76015;O76013;CON__P05784;CON__P02533;P02533;CON__Q6IFX2;CON__A2A4G1;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q04695;Q04695;F5GWP8;K7EPJ9;B4E2P9;B4DE59;CON__P08779;P08779;B4DWU0;B4E2J5;CON__P13645;P13645;CON__P02535-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q14525;Q14525;Q6A165;CON__Q9UE12;CON__Q15323;CON__A2A5Y0;CON__O76014;CON__REFSEQ:XP_986630;Q15323;Q14532;O76014 CON__P13645 229 235 KRT18;KRT35;KRTHA5;KRT38;KRT36;KRT14;KRT17;KRT16;KRT10;KRT28;KRT33B;KRTHA7;KRT31;KRT32;KRT37 Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha8;Keratin, type I cuticular Ha6;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha7 no no 2 0.027069 86.866 2 0.40237 0.47546 1.6183 2 Median 0.40237 0.47546 1.6183 2 0 Median NaN NaN NaN 0 0 Median 1711400000 1189800000 521600000 1711400000 1189800000 521600000 0 0 0 + 7313 1161;316;1150;1159;1168;1155;964;1169 7483 19378;19379 30337;30338 30337 2 LAADFSVPLIIDIK RRLSSFVTKGYRTRRLAADFSVPLIIDIKC RLAADFSVPLIIDIKCTKLFVEALGQIGPA R L A I K C 2 0 0 2 0 0 0 0 0 3 2 1 0 1 1 1 0 0 0 1 0 0 14 0 1513.8756 Q53SY7;F8VPD4;P27708;H7C3Z5 Q53SY7 1344 1357 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 3.6418E-06 101.93 2 0.8009 0.79075 NaN 1 Median 0.8009 0.79075 NaN 1 0 Median NaN NaN NaN 0 0 Median 14974000 5366000 9607700 14974000 5366000 9607700 0 0 0 7314 1259 7484 19380;19381 30339;30340;30341 30340 3 LAAEATEWQR PENILLSVNEQYIRRLAAEATEWQRSGAPP QYIRRLAAEATEWQRSGAPPPSGSAVSTAP R L A Q R S 3 1 0 0 0 1 2 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 10 0 1173.5778 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9 Q96SB4 231 240 SRPK1 SRSF protein kinase 1 yes no 2 1.5325E-09 131.44 1 2.1943 2.2195 NaN 1 Median 2.1943 2.2195 NaN 1 0 Median NaN NaN NaN 0 0 Median 17886000 3747000 14139000 17886000 3747000 14139000 0 0 0 7315 1988 7485 19382 30342;30343 30343 2 LAAEQELIR LEKQRQLAEGTAQQRLAAEQELIRLRAETE GTAQQRLAAEQELIRLRAETEQGEQQRQLL R L A I R L 2 1 0 0 0 1 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1041.5819 Q15149 Q15149 1846 1854 PLEC Plectin yes yes 2 3.3392E-07 119.27 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12712000 12712000 0 12712000 12712000 0 0 0 0 7316 1754 7486 19383 30344 30344 1 LAAFADALEFADEEK LYTKSKTKMRNRRFRLAAFADALEFADEEK LAAFADALEFADEEKESPVEFTGHKLIGVY R L A E K E 5 0 0 2 0 0 3 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 15 0 1638.7777 Q5SY16 Q5SY16 471 485 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 5.1571E-06 96.64 2 3 1.3584 1.3917 20.738 2 Median 1.3584 1.3917 20.738 2 0 Median NaN NaN NaN 0 0 Median 29723000 10533000 19191000 26044000 9532400 16512000 3678900 1000200 2678700 7317 1818 7487 19384;19385;19386;19387;19388 30345;30346;30347;30348;30349;30350;30351 30345 7 LAAIVAK VQVLVLDGRGHLLGRLAAIVAKQVLLGRKV GRGHLLGRLAAIVAKQVLLGRKVVVVRCEG R L A A K Q 3 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 684.45341 Q53H34;P40429;Q9BSQ6;M0QYS1;B4DNC8;M0QZU1;A0A096LPE0 Q53H34 19 25 RPL13A 60S ribosomal protein L13a yes no 2 0.026837 80.377 2 2 0.85051 0.82864 26.11 4 Median 0.88877 1.0485 5.2581 2 0 Median 0.83007 0.66947 2.1369 2 0 Median 965740000 498220000 467520000 926090000 476750000 449340000 39653000 21474000 18179000 7318 1558 7488 19389;19390;19391;19392 30352;30353;30354;30355;30356;30357;30358;30359;30360 30352 9 LAALADQWQFLVQK ERGACAGSEDAVKARLAALADQWQFLVQKS RLAALADQWQFLVQKSAEKSQKLKEANKQQ R L A Q K S 3 0 0 1 0 3 0 0 0 0 3 1 0 1 0 0 0 1 0 1 0 0 14 0 1629.8879 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1618 1631 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0085588 52.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7319 523 7489 19393 30361 30361 1 LAALEEQR EEDAEAGSEKEEEARLAALEEQRMEGKKPR EKEEEARLAALEEQRMEGKKPRVMAGTLKL R L A Q R M 2 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 928.49779 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7C267 B5MCF9 479 486 PES1 Pescadillo homolog yes no 2 1.6738E-08 137.18 4 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 200010000 200010000 0 181770000 181770000 0 18241000 18241000 0 7320 886 7490 19394;19395;19396;19397;19398;19399;19400;19401 30362;30363;30364;30365;30366;30367;30368;30369 30364 8 LAALEQNVER PQRKTTNPLDLAVMRLAALEQNVERRYLRE LAVMRLAALEQNVERRYLREPLWPTHEVVL R L A E R R 2 1 1 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1141.6091 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1558 1567 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 4.8926E-08 116.05 2 2 1.3334 1.295 27.811 4 Median 0.92517 1.0239 3.5613 2 0 Median 1.9027 1.6514 4.7311 2 0 Median 109660000 51884000 57777000 100230000 48611000 51616000 9433700 3273000 6160700 7321 1260 7491 19402;19403;19404;19405 30370;30371;30372;30373;30374;30375;30376;30377 30373 8 LAALNPESNTAGLDIFAK EEFLEAVLCPPRYPKLAALNPESNTAGLDI LNPESNTAGLDIFAKFSAYIKNSNPALNDN K L A A K F 4 0 2 1 0 0 1 1 0 1 3 1 0 1 1 1 1 0 0 0 0 0 18 0 1843.968 Q5SRT3;Q53FB0;O00299 Q5SRT3 96 113 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 3.27E-08 114.72 2 2 2.3467 2.1964 32.731 4 Median 2.7303 2.9901 8.5566 2 0 Median 2.1253 1.7073 0.5658 2 0 Median 105290000 28080000 77210000 83340000 21021000 62319000 21951000 7059500 14892000 7322 1362 7492 19406;19407;19408;19409 30378;30379;30380;30381;30382;30383;30384;30385;30386;30387 30379 10 LAALNVTEK LSDNASMCLMSIIKKLAALNVTEKDYREII MSIIKKLAALNVTEKDYREIIHRSLLEKLR K L A E K D 2 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 957.5495 O75691 O75691 1504 1512 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00055371 97.635 1 1.3419 1.5088 NaN 1 Median 1.3419 1.5088 NaN 1 0 Median NaN NaN NaN 0 0 Median 70746000 33952000 36794000 70746000 33952000 36794000 0 0 0 7323 1412 7493 19410 30388 30388 1 LAALPNVYEVISK FAGAVSPQEEEEFRRLAALPNVYEVISKSI RRLAALPNVYEVISKSIAPSIFGGTDMKKA R L A S K S 2 0 1 0 0 0 1 0 0 1 2 1 0 0 1 1 0 0 1 2 0 0 13 0 1415.8024 B1AHB1;Q53FG5;B1AHB0;A8K521;P33992;B4DQ39;B3KVF0;B4DVK5;Q59F49 B1AHB1 282 294 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 2 4.4689E-06 107.06 2 2 1.2054 1.0956 36.715 4 Median 1.4666 1.4627 2.0767 2 0 Median 0.97153 0.77997 9.2786 2 0 Median 63992000 25586000 38405000 52374000 19654000 32720000 11618000 5932000 5685500 7324 745 7494 19411;19412;19413;19414 30389;30390;30391;30392;30393;30394 30392 6 LAALSASLAR GEGTYALDSESCMEKLAALSASLARVVVPA SCMEKLAALSASLARVVVPATEEEAEVDEF K L A A R V 4 1 0 0 0 0 0 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 10 0 971.57638 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 259 268 PES1 Pescadillo homolog yes no 2 4.8296E-06 109.11 2 2 0.99612 1.0244 6.1933 4 Linear 0.89958 1.0147 2.3259 2 0 Median 1.129 0.92117 4.0143 2 0 Median 187340000 96847000 90496000 161610000 85605000 76003000 25734000 11242000 14493000 7325 886 7495 19415;19416;19417;19418 30395;30396;30397;30398;30399;30400;30401;30402 30398 8 LAANISGDK LHNDRVYYVSEKIMKLAANISGDKLVSLGT SEKIMKLAANISGDKLVSLGTCFGKFTKTH K L A D K L 2 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 9 0 887.47125 Q9Y221;B3KM49;J3QLW7 Q9Y221 54 62 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2 0.0010227 91.069 2 0.83112 0.8255 27.4 2 Median 0.83112 0.8255 27.4 2 0 Median NaN NaN NaN 0 0 Median 49581000 23855000 25726000 49581000 23855000 25726000 0 0 0 7326 2119 7496 19419;19420 30403;30404 30403 2 LAAQSCALSLVR LGRRIFAREHGSNKKLAAQSCALSLVRQLY NKKLAAQSCALSLVRQLYHLGVVEAYSGLT K L A V R Q 3 1 0 0 1 1 0 0 0 0 3 0 0 0 0 2 0 0 0 1 0 0 12 0 1287.6969 Q08211;Q58F26;Q6PJK6 Q08211 237 248 DHX9 ATP-dependent RNA helicase A yes no 2 2.8899E-09 124.67 2 2 1.3388 1.2765 5.8879 4 Median 1.1851 1.3464 1.4798 2 0 Median 1.4956 1.2175 0.63295 2 0 Median 201360000 81475000 119880000 175960000 71560000 104400000 25401000 9915600 15485000 7327 1691 7497 19421;19422;19423;19424 30405;30406;30407;30408;30409;30410;30411 30407 6 LAAQSLDTSGLR RMAAESRRVLLLAGRLAAQSLDTSGLRHVQ AGRLAAQSLDTSGLRHVQLAFFPPGTVHPL R L A L R H 2 1 0 1 0 1 0 1 0 0 3 0 0 0 0 2 1 0 0 0 0 0 12 0 1230.6568 P07199 P07199 299 310 CENPB Major centromere autoantigen B yes yes 2 8.7577E-23 157.24 2 2 1.2522 1.2303 13.861 4 Median 0.98229 1.1259 0.0056149 2 0 Median 1.6578 1.4154 7.2831 2 0 Median 353980000 173840000 180140000 302240000 155340000 146900000 51739000 18503000 33236000 7328 1450 7498 19425;19426;19427;19428 30412;30413;30414;30415;30416;30417;30418;30419;30420 30414 9 LAAQSQHVGFAR SPTSISSSAAAGLQRLAAQSQHVGFARSVV LQRLAAQSQHVGFARSVVKLKCQHCNRLFA R L A A R S 3 1 0 0 0 2 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 12 0 1283.6735 Q5VZL5;H7C1I7 Q5VZL5 669 680 ZMYM4 Zinc finger MYM-type protein 4 yes no 2;3 1.6138E-05 105.2 2 2 0.85421 0.91939 33.504 3 Median 0.79664 0.84641 11.697 2 0 Median 1.7442 1.4853 NaN 1 0 Median 41546000 20394000 21153000 36802000 19354000 17447000 4744800 1039200 3705700 7329 1835 7499 19429;19430;19431;19432 30421;30422;30423;30424;30425;30426 30422 6 LAASASTQQLQEVK HQQSGSELALRRSQRLAASASTQQLQEVKA RLAASASTQQLQEVKAKLQQCKAELNSTTE R L A V K A 3 0 0 0 0 3 1 0 0 0 2 1 0 0 0 2 1 0 0 1 0 0 14 0 1472.7835 O95235 O95235 680 693 KIF20A Kinesin-like protein KIF20A yes yes 2 1.2463E-21 183.99 2 2 0.93418 0.90558 18.749 4 Median 0.70414 0.79628 0.365 2 0 Median 1.3045 1.0898 8.3593 2 0 Median 336330000 180350000 155980000 240990000 137960000 103030000 95341000 42386000 52956000 7330 1421 7500 19433;19434;19435;19436 30427;30428;30429;30430;30431;30432;30433;30434 30428 8 LAASGEGGLQELSGHFENQK DWALYTYEDGSDDLKLAASGEGGLQELSGH EGGLQELSGHFENQKVMYGFCSVKDSQAAL K L A Q K V 2 0 1 0 0 2 3 4 1 0 3 1 0 1 0 2 0 0 0 0 0 0 20 0 2070.997 Q16643;D6RFI1 Q16643 43 62 DBN1 Drebrin yes no 3 1.3113E-18 111.65 2 1 1.8132 1.4795 NaN 1 Median NaN NaN NaN 0 0 Median 1.8132 1.4795 NaN 1 0 Median 52811000 2724600 50086000 46599000 0 46599000 6211400 2724600 3486900 7331 1773 7501 19437;19438;19439 30435;30436;30437 30435 3 LAASLWLWK YFNKQPYPTRREIEKLAASLWLWKSDIASH RREIEKLAASLWLWKSDIASHFSNKRKKCV K L A W K S 2 0 0 0 0 0 0 0 0 0 3 1 0 0 0 1 0 2 0 0 0 0 9 0 1086.6226 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 789 797 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.013169 60.59 1 1 1.4717 1.2931 NaN 1 Median NaN NaN NaN 0 0 Median 1.4717 1.2931 NaN 1 0 Median 1012300 413270 599020 0 0 0 1012300 413270 599020 7332 878 7502 19440;19441 30438;30439 30438 2 LAATNALLNSLEFTK IIQGMRKEEPSNNVKLAATNALLNSLEFTK LAATNALLNSLEFTKANFDKESERHFIMQV K L A T K A 3 0 2 0 0 0 1 0 0 0 4 1 0 1 0 1 2 0 0 0 0 0 15 0 1604.8774 B2RBR9;Q14974;B7Z5M1;J3KTM9;B7Z752 B2RBR9 192 206 KPNB1 Importin subunit beta-1 yes no 2 0.00054664 70.622 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1366000 1366000 0 0 0 0 1366000 1366000 0 7333 880 7503 19442 30440 30440 1 LAAVALINAAIQK GVDAANSAAQQYQRRLAAVALINAAIQKGV RRLAAVALINAAIQKGVAEKTVLELMNPEA R L A Q K G 5 0 1 0 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 13 0 1294.7973 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 389 401 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 2.9476E-06 108.98 2 1 1.7185 1.7787 53.615 3 Plateau 1.6657 1.7223 4.5518 2 0 Median 0.82353 0.68162 NaN 1 0 Median 27767000 11136000 16631000 26168000 10292000 15876000 1598900 844450 754470 7334 352 7504 19443;19444;19445 30441;30442;30443;30444 30442 4 LAAVDVSAR GILDEQAVQGLREGRLAAVDVSARAEVRRY GLREGRLAAVDVSARAEVRRYLEGTGSVAG R L A A R A 3 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 9 0 900.50288 A0A075B730;A0A087X1U6;P58107 A0A075B730 241 249 EPPK1 Epiplakin no no 2 0.048213 47.603 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31098000 0 31098000 31098000 0 31098000 0 0 0 7335 397;1622 7505 19446 30445 30445 1 LAAVVSACK AVNLYGPDAQVDRSRLAAVVSACKQLHRAG QVDRSRLAAVVSACKQLHRAGLLHNILPSQ R L A C K Q 3 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 917.50044 P78527 P78527 1448 1456 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0077375 69.628 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12702000 12702000 0 12702000 12702000 0 0 0 0 7336 1665 7506 19447 30446 30446 1 LACDFLAR HDAYSQAHLTLMALRLACDFLARGGSFITK LTLMALRLACDFLARGGSFITKVFRSRDYQ R L A A R G 2 1 0 1 1 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 964.48004 Q8IY81;J3KS36 Q8IY81 143 150 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.054494 42.109 2 1.1162 0.98436 0.80813 2 Median NaN NaN NaN 0 0 Median 1.1162 0.98436 0.80813 2 0 Median 4717600 2008600 2709000 0 0 0 4717600 2008600 2709000 7337 1898 7507 19448;19449 30447;30448 30447 2 LACDVDQVTR PMYQLYKRTFPVLLRLACDVDQVTRQLYEP PVLLRLACDVDQVTRQLYEPLVMQLIHWFT R L A T R Q 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 10 0 1175.5605 P78527;B4DL41 P78527 972 981 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0029901 66.568 1 3 0.38845 0.35905 50.018 2 Median 0.50187 0.5114 NaN 1 0 Median 0.30066 0.25209 NaN 1 0 Median 27056000 20635000 6420400 18616000 13212000 5403400 8439700 7422700 1017000 7338 1665 7508 19450;19451;19452;19453 30449;30450;30451;30452 30452 4 LACLSEEGNEIESGK EYVKSLTANPELIDRLACLSEEGNEIESGK LACLSEEGNEIESGKIIFSEHLPLSKLQQG R L A G K I 1 0 1 0 1 0 4 2 0 1 2 1 0 0 0 2 0 0 0 0 0 0 15 0 1634.7458 Q49AG4;G3V1J5;A8QI98;Q9Y2L1;F2Z2C0 Q49AG4 49 63 DIS3 Exosome complex exonuclease RRP44 yes no 2 0.042454 38.238 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3878300 0 3878300 3878300 0 3878300 0 0 0 7339 802 7509 19454 30453;30454 30453 2 LADALQELR LVEIDNGKQREFESRLADALQELRAQHEDQ REFESRLADALQELRAQHEDQVEQYKKELE R L A L R A 2 1 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1027.5662 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 241 249 LMNA Prelamin-A/C;Lamin-A/C yes no 2 1.1812E-18 175.38 2 2 1.2692 1.3026 17.083 4 Median 1.2652 1.4886 0.56137 2 0 Median 1.2907 1.1107 4.2125 2 0 Median 1084900000 503960000 580900000 1024700000 477810000 546870000 60178000 26144000 34034000 7340 1440 7510 19455;19456;19457;19458 30455;30456;30457;30458;30459;30460;30461;30462 30458 8 LADDLSTLQEK RALQQVQEKEVRAQKLADDLSTLQEKMAAT RAQKLADDLSTLQEKMAATSKEVARLETLV K L A E K M 1 0 0 2 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 11 0 1231.6296 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q9UPG3;Q4LE64;Q14980 Q4LE64 898 908 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 7.2066E-13 121.8 2 2 1.4989 1.1922 5.7142 2 Median NaN NaN NaN 0 0 Median 1.4989 1.1922 5.7142 2 0 Median 35124000 14314000 20809000 0 0 0 35124000 14314000 20809000 7341 186;1747 7511 19459;19460;19461;19462 30463;30464;30465;30466;30467;30468 30463 6 LADFGALHR MFAHRPRSWRELPLRLADFGALHRAEASGG RELPLRLADFGALHRAEASGGLGGLTRLRC R L A H R A 2 1 0 1 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 0 0 0 9 0 998.52976 Q9BW92;Q6ST48;F6S7Q7;U3KQG0 Q9BW92 430 438 TARS2 Threonine--tRNA ligase, mitochondrial yes no 3 0.0099065 45.161 2 1.1778 1.1824 0.05634 2 Median 1.1778 1.1824 0.05634 2 0 Median NaN NaN NaN 0 0 Median 19823000 8631000 11192000 19823000 8631000 11192000 0 0 0 7342 2011 7512 19463;19464 30469;30470;30471 30470 3 LADFGLAR LKPQNLLIDDKGTIKLADFGLARAFGIPIR DDKGTIKLADFGLARAFGIPIRVYTHEAIT K L A A R A 2 1 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 861.47085 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6;K7ELV5;B3KX76;Q8IWB3;H0YAZ9;Q9BWF9;Q9BVE2;E7EUK8;B4DK59;B4DHU6;B4DER5;E5RGN0;Q96GA5;A0A087X209;Q59G02;Q9BRL4;A0A087WZU2;F5H6Z0;B4DGP5;A0A024R996;A0A140VK97;A0A024R183;B4DK03;A0A024R980;A0A024RBH0;B7Z8T0;J3QSD7;A0A024RA66;A0A024RA85;Q00534;Q96Q40;O94921;Q07002;Q00536;Q00537;Q14004;B5BU53;B2R9L6;A0A024R880;P50750;A0A024RB10;A0A024RB77;G3V5T9;P24941;E7ESI2;B4DDL9;A0A024R8R3;Q00526;K7EJ83;F8VZZ0;F8VZ51;Q6LC83;A0A024RBB6;P11802;F8VXD2;F8VYH9;F8VTV8;F8VWX7;Q9NYV4 A0A024QZP7 144 151 CDC2;CDK1;DKFZp686L20222;CDK3;PCTK3;CDK16;CDK13;CDK14;PCTK1;CDK17;PCTK2;CDK12;CDC2L5;CDK6;CDK15;CDK18;CDK9;CDK2;CDK4 Cyclin-dependent kinase 1;Cyclin-dependent kinase 6;Cyclin-dependent kinase 15;Cyclin-dependent kinase 14;Cyclin-dependent kinase 18;Cyclin-dependent kinase 16;Cyclin-dependent kinase 17;Cyclin-dependent kinase 13;Cyclin-dependent kinase 9;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3;Cyclin-dependent kinase 4;Cyclin-dependent kinase 12 no no 2 0.00098095 120.65 2 2 1.3797 1.3442 19.01 4 Median 1.3797 1.571 0.36772 2 0 Median 1.3848 1.1315 2.6734 2 0 Median 267490000 112750000 154740000 243720000 102510000 141220000 23774000 10245000 13528000 7343 25;318;331;243;2085 7513 19465;19466;19467;19468 30472;30473;30474;30475;30476;30477;30478;30479 30474 8 LADFGVAGQLTDTQIK IKAANVLLSEQGDVKLADFGVAGQLTDTQI ADFGVAGQLTDTQIKRNTFVGTPFWMAPEV K L A I K R 2 0 0 2 0 2 0 2 0 1 2 1 0 1 0 0 2 0 0 1 0 0 16 0 1675.8781 Q8NBY1;B4E0Y9;Q9P289;Q9NWX4;Q499L9;B4DMR0;H0Y630;B4DR80;Q6P0Y1;Q5U0E6;B4DT57;Q9Y6E0;C9JJV0;C9JDH9;C9J6L2;C9JCC0;C9J232;H7C279;Q5CZ67;B4E185;B4DMA5;B3KRS6;A0A0S2Z4Y2;B4DVS7;Q96BA2;A0A024R4B2;O00506 Q8NBY1 160 175 STK26;MST4;STK24;HEL-S-95;STK25;DKFZp686J1430 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 25 yes no 2 4.3348E-13 116.03 3 2 1.3611 1.0973 3.24 2 Median NaN NaN NaN 0 0 Median 1.3611 1.0973 3.24 2 0 Median 71145000 10923000 60222000 57226000 4370400 52856000 13919000 6552500 7366600 7344 1065 7514 19469;19470;19471;19472;19473 30480;30481;30482;30483;30484;30485;30486 30482 7 LADFGVLHR MFDHRPRSWRELPLRLADFGVLHRNELSGA RELPLRLADFGVLHRNELSGALTGLTRVRR R L A H R N 1 1 0 1 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 1 0 0 9 0 1026.5611 Q5M7Z9;B2RDX5;Q53GX7;P26639;B4DKZ9;B3KTN2 Q5M7Z9 434 442 TARS Threonine--tRNA ligase, cytoplasmic yes no 3 0.015754 31.422 1 2.1211 2.1243 NaN 1 Median 2.1211 2.1243 NaN 1 0 Median NaN NaN NaN 0 0 Median 9124200 2636700 6487500 9124200 2636700 6487500 0 0 0 7345 892 7515 19474 30487 30487 1 LADMHSTEISLQQR EKNRSFSNAARVLSRLADMHSTEISLQQRL RLADMHSTEISLQQRLEYIARAILSAKSST R L A Q R L 1 1 0 1 0 2 1 0 1 1 2 0 1 0 0 2 1 0 0 0 0 0 14 0 1627.7988 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1063 1076 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.012204 43.604 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7346 39 7516 19475 30488 30488 21 1 LADPVTPVETILQR SEVGTILRNCVHVQKLADPVTPVETILQRC KLADPVTPVETILQRCNLEEISNYYGVSGF K L A Q R C 1 1 0 1 0 1 1 0 0 1 2 0 0 0 2 0 2 0 0 2 0 0 14 0 1550.8668 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 328 341 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.0050302 47.559 2 2 0.92157 0.87401 26.757 4 Median 1.0212 1.052 13.487 2 0 Median 0.83052 0.70222 18.218 2 0 Median 23666000 11403000 12263000 17259000 8130200 9128400 6407600 3272700 3134900 7347 291 7517 19476;19477;19478;19479 30489;30490;30491;30492;30493;30494;30495 30491 7 LAEAEQMALMGSR TRENMEQTITDLQKRLAEAEQMALMGSRKQ KRLAEAEQMALMGSRKQIQKLESRARELEG R L A S R K 3 1 0 0 0 1 2 1 0 0 2 0 2 0 0 1 0 0 0 0 0 0 13 0 1405.6694 B3KP05;Q9Y2K3 B3KP05 838 850 MYH15 Myosin-15 yes no 2 0.0039689 58.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7348 919 7518 19480 30496 30496 752;753 1 LAEDAPNFDGPAAEGQPGQK EEPKYSSLYAQLCLRLAEDAPNFDGPAAEG PNFDGPAAEGQPGQKQSTTFRRLLISKLQD R L A Q K Q 4 0 1 2 0 2 2 3 0 0 1 1 0 1 3 0 0 0 0 0 0 0 20 0 2010.9283 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77 D3DQV9 139 158 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 2.1363E-06 69.258 2 2 2.2112 2.3881 26.261 4 Linear 2.1649 2.2956 1.2145 2 0 Median 1.8294 1.469 8.6411 2 0 Median 64243000 22488000 41755000 55380000 18824000 36557000 8863100 3665000 5198200 7349 1054 7519 19481;19482;19483;19484 30497;30498;30499;30500;30501;30502;30503 30501 6 LAEDEAFQR IALKEKEAENERLRRLAEDEAFQRRRLEEQ NERLRRLAEDEAFQRRRLEEQAAQHKADIE R L A Q R R 2 1 0 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 9 0 1077.5091 Q15149 Q15149 2006 2014 PLEC Plectin yes yes 2 0.021651 57.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16594000 0 16594000 16594000 0 16594000 0 0 0 7350 1754 7520 19485 30504 30504 1 LAEDEGDSEPEAVGQSR GHPYVRRKRKKFPDRLAEDEGDSEPEAVGQ EDEGDSEPEAVGQSRGRRQKK_________ R L A S R G 2 1 0 2 0 1 4 2 0 0 1 0 0 0 1 2 0 0 0 1 0 0 17 0 1787.781 Q9UIG0 Q9UIG0 1461 1477 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.2326E-18 119.39 3 2 29.195 25.152 1.2809 2 Median NaN NaN NaN 0 0 Median 29.195 25.152 1.2809 2 0 Median 162570000 2435300 160140000 101760000 0 101760000 60811000 2435300 58376000 7351 2103 7521 19486;19487;19488;19489;19490 30505;30506;30507;30508;30509 30506 4 LAEDVVTFQTLPPQR QGETQTELVMFILLRLAEDVVTFQTLPPQR LAEDVVTFQTLPPQRRRDIQQTLTQNMERI R L A Q R R 1 1 0 1 0 2 1 0 0 0 2 0 0 1 2 0 2 0 0 2 0 0 15 0 1712.9097 A8K5Y7;Q9HAV4 A8K5Y7 160 174 XPO5 Exportin-5 yes no 2 0.0089439 51.998 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9209100 0 9209100 9209100 0 9209100 0 0 0 7352 754 7522 19491 30510 30510 1 LAEIGAPIQGNR PGHYGAWAAQELQAKLAEIGAPIQGNREEL QAKLAEIGAPIQGNREELVERLQSYTRQTG K L A N R E 2 1 1 0 0 1 1 2 0 2 1 0 0 0 1 0 0 0 0 0 0 0 12 0 1237.6779 Q13435;Q7Z3K9;E9PPJ0;E9PJ04;H0YCG1;E9PJT3 Q13435 36 47 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 2 0.00022203 95.775 1 1.2697 1.2897 NaN 1 Median 1.2697 1.2897 NaN 1 0 Median NaN NaN NaN 0 0 Median 15020000 5739700 9280400 15020000 5739700 9280400 0 0 0 7353 1713 7523 19492 30511 30511 1 LAELEEALQK AEQRGELALKDARNKLAELEEALQKAKQDM DARNKLAELEEALQKAKQDMARLLREYQEL K L A Q K A 2 0 0 0 0 1 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1142.6183 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76 CON__P13647 432 441 KRT5 Keratin, type II cytoskeletal 5 yes no 2 0.00010339 96.331 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80028000 80028000 0 80028000 80028000 0 0 0 0 + 7354 1162 7524 19493 30512 30512 1 LAELEGALQK SEQQGEAALSDARCKLAELEGALQKAKQDM DARCKLAELEGALQKAKQDMACLIREYQEV K L A Q K A 2 0 0 0 0 1 2 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1070.5972 A0JNT2;CON__Q61726;A0A087X106;CON__O43790;B4DN72;A8K872;CON__Q6NT21;CON__P78385;CON__Q14533;O43790;P78385;Q14533;Q8NFV1;Q8NFV0;Q6YFL4;Q6YFL2;Q8N120;F5GYI5;B7Z7N3;CON__P78386;A6NCN2;P78386 A0JNT2 373 382 KRT83;KRT81;KRT86;KRTHB6;KRTHB1;KRT85;KRT87P Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb1;Putative keratin-87 protein;Keratin, type II cuticular Hb5 yes no 2 0.0022766 69.825 1 0.78526 0.81295 NaN 1 Median 0.78526 0.81295 NaN 1 0 Median NaN NaN NaN 0 0 Median 18656000 9548100 9107900 18656000 9548100 9107900 0 0 0 + 7355 447 7525 19494 30513 30513 1 LAELLTQQHGLQCR DAEAVQRVRAAFQLRLAELLTQQHGLQCRA RLAELLTQQHGLQCRATATHTDVLKDGFVF R L A C R A 1 1 0 0 1 3 1 1 1 0 4 0 0 0 0 0 1 0 0 0 0 0 14 0 1665.8621 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 765 778 NOL6 Nucleolar protein 6 yes no 3 8.1948E-07 84.566 2 2 1.2181 1.1846 5.1591 4 Median 1.0208 1.125 5.3707 2 0 Median 1.4551 1.2077 0.80492 2 0 Median 112970000 51378000 61593000 94252000 44226000 50026000 18719000 7152200 11567000 7356 2038 7526 19495;19496;19497;19498 30514;30515;30516;30517;30518;30519;30520 30516 7 LAELQEQLK SDSSTDDSEEERAQRLAELQEQLKAVHEQL EERAQRLAELQEQLKAVHEQLAALSQPQQN R L A L K A 1 0 0 0 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1070.5972 O60885;A0A024R7H8;Q6PIS5;Q6NXE4;Q05BM2;Q5BJ26;M0QZD9;W8JJB1;A0A024R8H6;Q15059;B4DS09;A0A140F1N4 O60885 511 519 BRD4;BRD3 Bromodomain-containing protein 4;Bromodomain-containing protein 3 no no 2 0.027097 47.198 1 1.1128 0.92708 NaN 1 Median NaN NaN NaN 0 0 Median 1.1128 0.92708 NaN 1 0 Median 1768600 772840 995750 0 0 0 1768600 772840 995750 7357 1399;249 7527 19499 30521 30521 1 LAELQEQLR EESESSDSEEERAHRLAELQEQLRAVHEQL EERAHRLAELQEQLRAVHEQLAALSQGPIS R L A L R A 1 1 0 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1098.6033 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A0G2JHN8;A0A140T9I1;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7 A0A024RCR5 520 528 BRD2 Bromodomain-containing protein 2 yes no 2 0.00035885 100.84 2 0.5072 0.51488 16.327 2 Median 0.5072 0.51488 16.327 2 0 Median NaN NaN NaN 0 0 Median 40066000 25220000 14846000 40066000 25220000 14846000 0 0 0 7358 367 7528 19500;19501 30522;30523;30524 30523 3 LAELSDYR KKAVAMSKRYGSDRRLAELSDYRRLSESQL RYGSDRRLAELSDYRRLSESQLSFRRSPTK R L A Y R R 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 8 0 965.48181 A0A0S2Z4Z0;Q96PK6;B4DNG4 A0A0S2Z4Z0 608 615 RBM14 RNA-binding protein 14 yes no 2 0.0053714 84.568 2 1.3756 1.5389 NaN 1 Median 1.3756 1.5389 NaN 1 0 Median NaN NaN NaN 0 0 Median 44810000 19196000 25614000 44810000 19196000 25614000 0 0 0 7359 571 7529 19502;19503 30525;30526;30527 30525 3 LAEMPADSGYPAYLGAR STSRWAEALREISGRLAEMPADSGYPAYLG EMPADSGYPAYLGARLASFYERAGRVKCLG R L A A R L 4 1 0 1 0 0 1 2 0 0 2 0 1 0 2 1 0 0 2 0 0 0 17 0 1780.8454 P38606;B7Z2V6 P38606 365 381 ATP6V1A V-type proton ATPase catalytic subunit A yes no 2 0.00317 45.915 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2618600 0 2618600 2618600 0 2618600 0 0 0 7360 1553 7530 19504;19505 30528;30529 30529 1308 2 LAEMSLEQDNIK IAAHLNPSDTEEWVRLAEMSLEQDNIKQAI WVRLAEMSLEQDNIKQAIFCYTKALKYEPT R L A I K Q 1 0 1 1 0 1 2 0 0 1 2 1 1 0 0 1 0 0 0 0 0 0 12 0 1389.681 Q9Y5Q9 Q9Y5Q9 223 234 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 0.00053573 74.841 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15511000 0 15511000 15511000 0 15511000 0 0 0 7361 2150 7531 19506;19507 30530;30531 30530 2001 2 LAENIDAQLK IYLQHADEEREKTYKLAENIDAQLKRMAQD EKTYKLAENIDAQLKRMAQDLKDIIEHLNT K L A L K R 2 0 1 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1113.603 M0QXN5;A0A024QZF1;P37198 M0QXN5 360 369 NUP62;hCG_19665 Nuclear pore glycoprotein p62 yes no 2 4.1197E-05 89.08 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5470200 5470200 0 5470200 5470200 0 0 0 0 7362 19 7532 19508;19509 30532;30533 30533 2 LAEPQLR YKMVKGFSNRARKARLAEPQLREENDLGLF SNRARKARLAEPQLREENDLGLFGYWQTEE R L A L R E 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 825.47085 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPK7;D2CPK0;D2CPI8 A0A024R2M8 719 725 XPC DNA repair protein complementing XP-C cells no no 2 0.016896 97.596 2 0.5763 0.65171 0.26481 2 Median 0.5763 0.65171 0.26481 2 0 Median NaN NaN NaN 0 0 Median 140530000 84687000 55848000 140530000 84687000 55848000 0 0 0 7363 118;1184 7533 19510;19511 30534;30535;30536 30535 3 LAEPYGK SNLPHSGYSDSAVLKLAEPYGKIKNYILMR YSDSAVLKLAEPYGKIKNYILMRMKSQAFI K L A G K I 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 7 0 776.40685 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;H0Y8T4;Q5CZA7;B4DF66;B3KM87;B4DRS1;Q9H4N1;D6RBK5 D6REM6 516 522 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 2 0.031121 69.383 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28530000 0 28530000 28530000 0 28530000 0 0 0 7364 542 7534 19512 30537 30537 1 LAESLLALSQQEELADLPK ______________________________ LLALSQQEELADLPKDYLLSESEDEGDNDG R L A P K D 3 0 0 1 0 2 3 0 0 0 6 1 0 0 1 2 0 0 0 0 0 0 19 0 2067.11 Q9BVJ6 Q9BVJ6 6 24 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 9.5666E-31 190.1 2 2 1.3265 1.296 5.9863 4 Median 1.0807 1.2167 5.7943 2 0 Median 1.5761 1.326 0.098045 2 0 Median 306230000 133260000 172970000 198400000 92431000 105970000 107830000 40829000 66999000 7365 2008 7535 19513;19514;19515;19516 30538;30539;30540;30541;30542;30543;30544;30545 30538 8 LAESLSSDPEVLLQIDGVTEDK GVHYFNIFNTVTLKKLAESLSSDPEVLLQI DPEVLLQIDGVTEDKLEKYGAEVISVLQKY K L A D K L 1 0 0 3 0 1 3 1 0 1 4 1 0 0 1 3 1 0 0 2 0 0 22 0 2357.185 B2RAN0;P54132;B7ZKN7;B7Z2X2;B7Z8C1 B2RAN0 1249 1270 BLM Bloom syndrome protein yes no 2 0.014719 31.389 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5397400 5397400 0 5397400 5397400 0 0 0 0 7366 873 7536 19517 30546 30546 1 LAETQEEISAEVAAK FIADCDRRTEVAKKRLAETQEEISAEVAAK LAETQEEISAEVAAKAERVHELNEEIGKLL R L A A K A 4 0 0 0 0 1 4 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 15 0 1587.7992 B3KRR1;B3KSL5;A0A0A6YYJ8;Q9Y383 B3KRR1 55 69 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 2 2.1021E-15 133.05 1 2 0.73504 0.74239 37.034 3 Plateau 0.73504 0.74239 NaN 1 0 Median 0.4989 0.39288 6.5786 2 0 Median 35421000 21159000 14262000 28520000 16487000 12034000 6900800 4672400 2228400 7367 494 7537 19518;19519;19520 30547;30548;30549;30550;30551 30547 5 LAETVFNFQEK ALVWESYKLDPYVQRLAETVFNFQEKVDDL YVQRLAETVFNFQEKVDDLLIIEEKIDLEV R L A E K V 1 0 1 0 0 1 2 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 11 0 1324.6663 Q14204 Q14204 836 846 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00040938 76.943 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5944400 0 5944400 5944400 0 5944400 0 0 0 7368 1729 7538 19521;19522;19523 30552;30553;30554 30554 3 LAEVEAALEK EERLAEQQRAEERERLAEVEAALEKQRQLA EERERLAEVEAALEKQRQLAEAHAQAKAQA R L A E K Q 3 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1071.5812 Q15149 Q15149 1499 1508 PLEC Plectin yes yes 2 4.7667E-08 116.3 2 1.1448 1.1393 14.834 2 Median 1.1448 1.1393 14.834 2 0 Median NaN NaN NaN 0 0 Median 50800000 24418000 26383000 50800000 24418000 26383000 0 0 0 7369 1754 7539 19524;19525 30555;30556 30555 2 LAEVTEEEWLSIPEVGDAR ERPKIQQQFSDLKRKLAEVTEEEWLSIPEV TEEEWLSIPEVGDARNKRQRNPRYEKLTPV K L A A R N 2 1 0 1 0 0 5 1 0 1 2 0 0 0 1 1 1 1 0 2 0 0 19 0 2142.0481 O94906 O94906 149 167 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0048421 49.333 1 0.81134 0.80082 NaN 1 Median 0.81134 0.80082 NaN 1 0 Median NaN NaN NaN 0 0 Median 12826000 5550200 7276100 12826000 5550200 7276100 0 0 0 7370 1418 7540 19526 30557 30557 1 LAFIDPATGK GIRYEVGPPTLCCLKLAFIDPATGKLMDKS LCCLKLAFIDPATGKLMDKSFSIRYHDMPD K L A G K L 2 0 0 1 0 0 0 1 0 1 1 1 0 1 1 0 1 0 0 0 0 0 10 0 1031.5651 Q9NSI6;H7BZR9;Q5R2U7;H7C409 Q9NSI6 1024 1033 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.0032667 65.305 2 1 1.7654 1.6662 16.069 2 Median 1.7499 1.8667 NaN 1 0 Median 1.7811 1.4872 NaN 1 0 Median 29888000 14012000 15876000 28083000 13410000 14674000 1804600 602600 1202000 7371 2068 7541 19527;19528;19529 30558;30559;30560;30561 30559 4 LAFLDPDTGK GIKYEVGLPTLCCLKLAFLDPDTGKLTGGS LCCLKLAFLDPDTGKLTGGSFTMKYHDMPD K L A G K L 1 0 0 2 0 0 0 1 0 0 2 1 0 1 1 0 1 0 0 0 0 0 10 0 1075.555 Q8WWQ0 Q8WWQ0 1023 1032 PHIP PH-interacting protein yes yes 2 5.2324E-06 108.81 2 2 1.0736 1.0177 15.064 4 Median 0.79711 0.89904 2.9159 2 0 Median 1.4548 1.1614 4.0589 2 0 Median 249740000 136850000 112890000 214760000 122840000 91914000 34984000 14009000 20975000 7372 1942 7542 19530;19531;19532;19533 30562;30563;30564;30565;30566;30567;30568;30569 30565 8 LAFLDPISGK GIKYEVGPPTLCCLKLAFLDPISGKMTGES LCCLKLAFLDPISGKMTGESFSIKYHDMPD K L A G K M 1 0 0 1 0 0 0 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 10 0 1059.5964 Q6RI45 Q6RI45 1005 1014 BRWD3 Bromodomain and WD repeat-containing protein 3 yes yes 2 0.042499 46.158 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 503040 0 503040 0 0 0 503040 0 503040 7373 1860 7543 19534;19535 30570;30571 30571 2 LAFLNVQAAEEALPR EYACTAVDMISRRTRLAFLNVQAAEEALPR LAFLNVQAAEEALPRIVELMGRELNWDDYK R L A P R I 4 1 1 0 0 1 2 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 15 0 1640.8886 B7Z601;Q53T76;A8K1Z2;A0A140VJK2;P43304 B7Z601 331 345 GPD2 Glycerol-3-phosphate dehydrogenase;Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 2 4.5793E-11 116.55 2 1.3208 1.3325 NaN 1 Median 1.3208 1.3325 NaN 1 0 Median NaN NaN NaN 0 0 Median 17113000 4475500 12637000 17113000 4475500 12637000 0 0 0 7374 603 7544 19536;19537 30572;30573 30573 1 LAFPGETLSDIPCK TGDQQGLLKAIQNDKLAFPGETLSDIPCKT KLAFPGETLSDIPCKTEEEGVGCGGAGRRG K L A C K T 1 0 0 1 1 0 1 1 0 1 2 1 0 1 2 1 1 0 0 0 0 0 14 0 1546.7701 D6W625;Q13111 D6W625 169 182 CHAF1A Chromatin assembly factor 1 subunit A yes no 2 0.019825 45.433 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9785900 9785900 0 9785900 9785900 0 0 0 0 7375 1204 7545 19538;19539 30574;30575 30574 2 LAFVIR MARKAGNFYVPAEPKLAFVIRIRGINGVSP NFYVPAEPKLAFVIRIRGINGVSPKVRKVL K L A I R I 1 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 6 0 717.45375 A0A024R814;P18124;A8MUD9;O95036;C9JIJ5;C9JZ88 A0A024R814 100 105 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2 0.037498 123.07 1 0.93943 1.1125 NaN 1 Median 0.93943 1.1125 NaN 1 0 Median NaN NaN NaN 0 0 Median 405960000 207590000 198370000 405960000 207590000 198370000 0 0 0 7376 240 7546 19540 30576;30577 30577 2 LAGANPAVITCDELLLGHEK KNWYPRQKICYAKRKLAGANPAVITCDELL PAVITCDELLLGHEKAPAFRDYVAVARGSK K L A E K A 3 0 1 1 1 0 2 2 1 1 4 1 0 0 1 0 1 0 0 1 0 0 20 0 2120.0936 P78527 P78527 4051 4070 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 4.5147E-18 117.84 2 2 0.55087 0.53206 56.53 4 Median 0.76097 0.85873 0.56055 2 0 Median 0.39277 0.32278 3.5434 2 0 Median 221820000 137100000 84720000 156120000 89587000 66535000 65696000 47511000 18185000 7377 1665 7547 19541;19542;19543;19544 30578;30579;30580;30581;30582;30583;30584;30585 30582 8 LAGAQQVQTQIQVAK LKTQFLTTPISQAQKLAGAQQVQTQIQVAK LAGAQQVQTQIQVAKLPQVVQQQTPVASIQ K L A A K L 3 0 0 0 0 5 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 15 0 1581.8839 Q96L91;A0A0A0MR70 Q96L91 3032 3046 EP400 E1A-binding protein p400 yes no 2 0.00019438 77.744 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3166400 3166400 0 3166400 3166400 0 0 0 0 7378 1977 7548 19545 30586;30587 30587 2 LAGASPATVAAAAAAGSGPK AEWYNIDFSLQNQLRLAGASPATVAAAAAA PATVAAAAAAGSGPKDPMARKMRLRRRKDS R L A P K D 9 0 0 0 0 0 0 3 0 0 1 1 0 0 2 2 1 0 0 1 0 0 20 0 1637.8737 B4DIX0;Q13045;Q59H95;B4DNA8 B4DIX0 371 390 FLII Protein flightless-1 homolog yes no 2 5.1395E-05 60.657 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6310100 0 6310100 6310100 0 6310100 0 0 0 7379 984 7549 19546 30588;30589 30588 2 LAGEELAGEEAPQEK KVNKAGMEKEKAEEKLAGEELAGEEAPQEK LAGEELAGEEAPQEKAEDKPSTDLSAPVNG K L A E K A 3 0 0 0 0 1 5 2 0 0 2 1 0 0 1 0 0 0 0 0 0 0 15 0 1569.7522 Q7Z4V5;A0A087WX58;K7EPS6 Q7Z4V5 575 589 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 2 0.00022014 63.944 1 0.44633 0.45152 NaN 1 Median 0.44633 0.45152 NaN 1 0 Median NaN NaN NaN 0 0 Median 16444000 13202000 3241700 16444000 13202000 3241700 0 0 0 7380 1877 7550 19547 30590 30590 1 LAGELQLLLEEIK KTAELQEELSGEKNRLAGELQLLLEEIKSS NRLAGELQLLLEEIKSSKDQLKELTLENSE R L A I K S 1 0 0 0 0 1 3 1 0 1 5 1 0 0 0 0 0 0 0 0 0 0 13 0 1467.8548 P49454;Q9UHT7;A0A087WTY4 P49454 2742 2754 CENPF Centromere protein F yes no 2 1.3035E-23 155.97 2 1.0195 1.0539 6.1396 2 Median 1.0195 1.0539 6.1396 2 0 Median NaN NaN NaN 0 0 Median 29307000 15759000 13548000 29307000 15759000 13548000 0 0 0 7381 1581 7551 19548;19549 30591;30592;30593;30594;30595;30596 30596 6 LAGESESNLR GAFFFLINGPEIMSKLAGESESNLRKAFEE EIMSKLAGESESNLRKAFEEAEKNAPAIIF K L A L R K 1 1 1 0 0 0 2 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 10 0 1074.5306 V9HW80;P55072;Q96IF9;Q9HAP1 V9HW80 278 287 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 2 0.0014915 85.67 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12623000 5357400 7265200 12623000 5357400 7265200 0 0 0 7382 1613 7552 19550;19551 30597;30598 30597 2 LAGLDITDATLR GQDNRSKLRNMTDFRLAGLDITDATLRLII DFRLAGLDITDATLRLIIRHMPLLSRLDLS R L A L R L 2 1 0 2 0 0 0 1 0 1 3 0 0 0 0 0 2 0 0 0 0 0 12 0 1257.6929 I3VM54;I3VM53;Q9Y2K7 I3VM54 1029 1040 KDM2A Lysine-specific demethylase 2A yes no 2 7.0704E-06 109.42 2 2 0.55441 0.50023 9.1284 3 Median 0.52662 0.5564 NaN 1 0 Median 0.57738 0.48176 5.321 2 0 Median 41116000 26805000 14311000 23515000 15517000 7997600 17601000 11288000 6313100 7383 1323 7553 19552;19553;19554;19555 30599;30600;30601;30602;30603;30604;30605;30606 30604 8 LAGLEEALQK AEQQGEAALNDAKCKLAGLEEALQKAKQDM DAKCKLAGLEEALQKAKQDMACLLKEYQEV K L A Q K A 2 0 0 0 0 1 2 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1070.5972 Q701L7;CON__Q9NSB4;Q9NSB4 Q701L7 382 391 KRTHB2;KRT82 Keratin, type II cuticular Hb2 yes no 2 0.0014904 85.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9892800 9892800 0 9892800 9892800 0 0 0 0 + 7384 1181 7554 19556 30607 30607 1 LAGLEYVLHFTALNGK LLIDFFRGPTVSNIRLAGLEYVLHFTALNG AGLEYVLHFTALNGKIYFRSYKLLLKKSGC R L A G K I 2 0 1 0 0 0 1 2 1 0 4 1 0 1 0 0 1 0 1 1 0 0 16 0 1744.9512 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 177 192 RPF2 Ribosome production factor 2 homolog yes no 2;3 6.3029E-10 125.73 4 3 1.0348 1.009 9.1477 7 Median 0.93185 1.0197 4.1423 4 0 Median 1.1585 0.9511 12.012 3 0 Median 144060000 71182000 72879000 118440000 58463000 59972000 25626000 12719000 12907000 7385 773 7555 19557;19558;19559;19560;19561;19562;19563 30608;30609;30610;30611;30612;30613;30614;30615;30616;30617;30618 30609 10 LAGSLLTQALESHAEGFR ESGSAQAGGNQALPRLAGSLLTQALESHAE SLLTQALESHAEGFRERFEKTFQLKEKGLS R L A F R E 3 1 0 0 0 1 2 2 1 0 4 0 0 1 0 2 1 0 0 0 0 0 18 0 1898.985 Q58F09;Q13724;A8K9K4;C9J8D4 Q58F09 352 369 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 3 6.9935E-07 85.808 2 2 0.95969 0.8912 26.503 4 Median 1.0726 1.0719 9.7833 2 0 Median 0.8408 0.70644 16.536 2 0 Median 38696000 17668000 21028000 24855000 10087000 14768000 13841000 7580900 6259700 7386 1720 7556 19564;19565;19566;19567 30619;30620;30621;30622;30623;30624 30622 4 LAGVTLGQR EQPIFLTPCMRDLIKLAGVTLGQRRAQARR MRDLIKLAGVTLGQRRAQARRQTIRHSTRE K L A Q R R 1 1 0 0 0 1 0 2 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 913.53451 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 649 657 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.019545 51.066 2 0.91203 0.76915 4.5873 2 Median NaN NaN NaN 0 0 Median 0.91203 0.76915 4.5873 2 0 Median 6584900 3241000 3343900 0 0 0 6584900 3241000 3343900 7387 222 7557 19568;19569 30625;30626 30625 2 LAHEVGWK VVRLKPTRKFAYLGRLAHEVGWKYQAVTAT KFAYLGRLAHEVGWKYQAVTATLEEKRKEK R L A W K Y 1 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 1 0 1 0 0 8 0 938.4974 Q53H34;P40429;Q9BSQ6;Q5QTS3;M0QYS1;Q8J015;Q0VGL3 Q53H34 141 148 RPL13A;RPL13a 60S ribosomal protein L13a yes no 2;3 0.0011205 122.13 4 2 0.74401 0.83482 14.912 5 Median 0.793 0.93045 14.168 4 0 Linear 0.88558 0.68834 NaN 1 0 Median 1066100000 589720000 476360000 1047500000 583370000 464130000 18591000 6353500 12238000 7388 1558 7558 19570;19571;19572;19573;19574;19575 30627;30628;30629;30630;30631;30632;30633;30634;30635;30636 30633 10 LAHISTDPR GVLDQREYLTTLGQRLAHISTDPRLAKAIV TTLGQRLAHISTDPRLAKAIVLAAIFRCLH R L A P R L 1 1 0 1 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 9 0 1008.5352 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 846 854 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 0.010456 38.086 1 1.2121 1.2441 NaN 1 Median 1.2121 1.2441 NaN 1 0 Median NaN NaN NaN 0 0 Median 25717000 10758000 14959000 25717000 10758000 14959000 0 0 0 7389 122 7559 19576 30637 30637 1 LAHLGVQVK ATSFLLALEPELEARLAHLGVQVKGEDEEE PELEARLAHLGVQVKGEDEEENNLEVRETK R L A V K G 1 0 0 0 0 1 0 1 1 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 963.58655 Q96HX3;Q6IBR0;Q53EP4;P04843;F8WF32 Q96HX3 42 50 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2;3 0.01372 44.117 2 1.1924 1.2204 3.8101 2 Median 1.1924 1.2204 3.8101 2 0 Median NaN NaN NaN 0 0 Median 31467000 13242000 18226000 31467000 13242000 18226000 0 0 0 7390 1444 7560 19577;19578 30638;30639 30638 2 LAIALGDAVNHPTPMAAAANEVYK FKPDFYLKYIQKDLRLAIALGDAVNHPTPM NHPTPMAAAANEVYKRAKALDQSDNDMSAV R L A Y K R 7 0 2 1 0 0 1 1 1 1 2 1 1 0 2 0 1 0 1 2 0 0 24 0 2436.2471 D3DUE6;K7EMM8;D3DUE7;Q49A26 D3DUE7 525 548 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 3 3.9306E-16 89.462 4 2 1.7982 2.02 28.3 5 Median 1.8313 2.0211 6.5887 4 0 Median 1.3272 1.0805 NaN 1 0 Median 236790000 92530000 144260000 221960000 89564000 132390000 14831000 2967000 11864000 7391 1194;1193 7561;7562 19579;19580;19581;19582;19583;19584 30640;30641;30642;30643;30644;30645;30646;30647;30648 30641 911 9 LAIGVEGGFDLSEEK PATGTGDPPRKKPTRLAIGVEGGFDLSEEK LAIGVEGGFDLSEEKFELDEDVKIVILPDY R L A E K F 1 0 0 1 0 0 3 3 0 1 2 1 0 1 0 1 0 0 0 1 0 0 15 0 1562.7828 A0A140VJZ1;P45974;F5H571 A0A140VJZ1 99 113 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.0012687 72.34 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7392 613 7563 19585;19586 30649;30650 30650 2 LAILQVGNR QVTQLKEQVPGFTPRLAILQVGNRDDSNLY PGFTPRLAILQVGNRDDSNLYINVKLKAAE R L A N R D 1 1 1 0 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 982.59236 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 38 46 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0065179 67.032 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7393 196 7564 19587 30651 30651 1 LAINLSSGVSGAGGTVHQPGFIVVETNYR VFQRKRKSRRYYPTRLAINLSSGVSGAGGT TVHQPGFIVVETNYRLYAYTESELQIALIA R L A Y R L 2 1 2 0 0 1 1 5 1 2 2 0 0 1 1 3 2 0 1 4 0 0 29 0 2942.525 B4DNU0;Q53HH3;Q92759 B4DNU0 292 320 GTF2H4 General transcription factor IIH subunit 4 yes no 3 0.02343 16.202 1 1.0644 0.90511 NaN 1 Median NaN NaN NaN 0 0 Median 1.0644 0.90511 NaN 1 0 Median 2963700 1834700 1129100 0 0 0 2963700 1834700 1129100 7394 1016 7565 19588 30652 30652 1 LAIQLGAQALLGAAK DALADGGVKMGLPRRLAIQLGAQALLGAAK LAIQLGAQALLGAAKMLLDSEQHPCQLKDN R L A A K M 5 0 0 0 0 2 0 2 0 1 4 1 0 0 0 0 0 0 0 0 0 0 15 0 1436.8715 B3KMB7;A0A087WTV6;A0A024R3Q9;Q4W8W1;A0A087WZR9;A0A0S2Z5U6;Q96C36;J3KR12;B4DQK8 B3KMB7 93 107 PYCR2;P5CR2 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 2 yes no 2 0.00022309 68.525 1 0.79052 0.79642 NaN 1 Median 0.79052 0.79642 NaN 1 0 Median NaN NaN NaN 0 0 Median 7315200 4353800 2961400 7315200 4353800 2961400 0 0 0 7395 137 7566 19589 30653 30653 1 LAIQLLK LAKYIYHKHDPALPRLAIQLLKRLATVAPM KHDPALPRLAIQLLKRLATVAPMSVYACLG R L A L K R 1 0 0 0 0 1 0 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 7 0 797.53747 Q5SRE5;Q9BS12 Q5SRE5 870 876 NUP188 Nucleoporin NUP188 homolog yes no 2 0.013378 102.98 2 1.6002 1.6292 18.096 2 Median 1.6002 1.6292 18.096 2 0 Median NaN NaN NaN 0 0 Median 26595000 8875400 17720000 26595000 8875400 17720000 0 0 0 7396 1816 7567 19590;19591 30654;30655;30656 30655 3 LAIWDTAGQER DFKVKTISVDGNKAKLAIWDTAGQERFRTL NKAKLAIWDTAGQERFRTLTPSYYRGAQGV K L A E R F 2 1 0 1 0 1 1 1 0 1 1 0 0 0 0 0 1 1 0 0 0 0 11 0 1258.6306 Q9NP72;B7Z4P9 Q9NP72 59 69 RAB18 Ras-related protein Rab-18 yes no 2 0.001099 70.1 2 2.8484 2.8377 5.4934 2 Median 2.8484 2.8377 5.4934 2 0 Median NaN NaN NaN 0 0 Median 22269000 5973100 16296000 22269000 5973100 16296000 0 0 0 7397 2055 7568 19592;19593 30657;30658 30657 2 LALAGIGQPVK QEVVEMRKKNEEFKKLALAGIGQPVKKSVS EFKKLALAGIGQPVKKSVSQVTKSVDFHFR K L A V K K 2 0 0 0 0 1 0 2 0 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1065.6546 Q643R0;Q9ULW0;B3KM90 Q643R0 238 248 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.00012034 96.253 1 2 0.67898 0.76372 NaN 1 Median 0.67898 0.76372 NaN 1 0 Median NaN NaN NaN 0 0 Median 136470000 88346000 48125000 119980000 71857000 48125000 16489000 16489000 0 7398 1837 7569 19594;19595;19596 30659;30660;30661;30662 30660 4 LALDLEIATYR LARLLRDYQELMNTKLALDLEIATYRTLLE MNTKLALDLEIATYRTLLEGEESRMSGECA K L A Y R T 2 1 0 1 0 0 1 0 0 1 3 0 0 0 0 0 1 0 1 0 0 0 11 0 1276.7027 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 473 483 KRT1 Keratin, type II cytoskeletal 1 no no 2 3.0737E-23 155.42 5 4 1.2063 1.2094 8.0661 4 Median 1.07 1.2094 0.91922 2 0 Median 1.4865 1.2878 12.448 2 0 Median 2130500000 1943100000 187470000 1884900000 1750400000 134500000 245590000 192630000 52965000 + 7399 1308;1309 7570 19597;19598;19599;19600;19601;19602;19603;19604;19605 30663;30664;30665;30666;30667;30668;30669;30670;30671;30672;30673;30674;30675 30670 13 LALDMEIHAYR MQQQLDEYQELLDIKLALDMEIHAYRKLLE LDIKLALDMEIHAYRKLLEGEEERLRLSPS K L A Y R K 2 1 0 1 0 0 1 0 1 1 2 0 1 0 0 0 0 0 1 0 0 0 11 0 1330.6704 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;B4DFR3 P02545 367 377 LMNA Prelamin-A/C;Lamin-A/C yes no 3 7.619E-05 88.441 2 1.5021 1.7088 1.8635 2 Median 1.5021 1.7088 1.8635 2 0 Median NaN NaN NaN 0 0 Median 235090000 99162000 135930000 235090000 99162000 135930000 0 0 0 7400 1440 7571 19606;19607 30676;30677;30678;30679;30680 30677 1137 5 LALDMEISAYR MQQQLNDYEQLLDVKLALDMEISAYRKLLE LDVKLALDMEISAYRKLLEGEEERLKLSPS K L A Y R K 2 1 0 1 0 0 1 0 0 1 2 0 1 0 0 1 0 0 1 0 0 0 11 0 1280.6435 P20700;E9PBF6;B4DZT3 P20700 368 378 LMNB1 Lamin-B1 yes no 2 3.8563E-08 112.71 2 1.668 1.8932 4.923 2 Median 1.668 1.8932 4.923 2 0 Median NaN NaN NaN 0 0 Median 123070000 49875000 73195000 123070000 49875000 73195000 0 0 0 7401 1502 7572 19608;19609 30681;30682;30683;30684 30681 1258 4 LALDVEIATYR LARLLRDYQELMNVKLALDVEIATYRKLLE MNVKLALDVEIATYRKLLEGEECRMSGDLS K L A Y R K 2 1 0 1 0 0 1 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 11 0 1262.6871 CON__P35908;P35908;Q01546;CON__Q01546;CON__P07744;H0YID6;CON__REFSEQ:XP_932229;CON__O95678;O95678;CON__Q8BGZ7;B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4;CON__Q5XKE5;Q5XKE5;CON__P13647;P13647;B4E1T1;B4DL32;H0YI76 CON__P35908 477 487 KRT2;KRT76;KRT79;KRT75;KRT6C;KRT6A;KRT5 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 5 no no 2 7.803E-05 95.573 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1055800000 1055800000 0 1040200000 1040200000 0 15640000 15640000 0 + 7402 1166;1162;859;1154;1147;1180;1175 7573 19610;19611 30685;30686 30685 2 LALDYGIK DVNDKRQVSKERGEKLALDYGIKFMETSAK SKERGEKLALDYGIKFMETSAKANINVENA K L A I K F 1 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 1 0 0 0 8 0 891.50657 A0A024R7I3;P61006 A0A024R7I3 139 146 RAB8A Ras-related protein Rab-8A yes no 2 0.036793 48.561 1 2.2084 2.2277 NaN 1 Median 2.2084 2.2277 NaN 1 0 Median NaN NaN NaN 0 0 Median 7067500 2470300 4597300 7067500 2470300 4597300 0 0 0 7403 226 7574 19612 30687 30687 1 LALFPLLPK VLGLNEDPLKWWSDRLALFPLLPKVLQKYW KWWSDRLALFPLLPKVLQKYWCVTATRVAP R L A P K V 1 0 0 0 0 0 0 0 0 0 4 1 0 1 2 0 0 0 0 0 0 0 9 0 1010.6528 A0A024RBU4;O96006 A0A024RBU4 595 603 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 2 0.0019598 78.616 2 0.76451 0.77996 0.32576 2 Median 0.76451 0.77996 0.32576 2 0 Median NaN NaN NaN 0 0 Median 25358000 14362000 10996000 25358000 14362000 10996000 0 0 0 7404 347 7575 19613;19614 30688;30689;30690;30691;30692 30688 5 LALFQAIGK ERATTGYPDPYGGEKLALFQAIGKEVVDRA PYGGEKLALFQAIGKEVVDRALGQSWLEVQ K L A G K E 2 0 0 0 0 1 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 959.5804 A0A075B730;A0A087X1U6;P58107 A0A075B730 106 114 EPPK1 Epiplakin no no 2 0.0020713 82.671 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12864000 0 12864000 12864000 0 12864000 0 0 0 7405 397;1622 7576 19615 30693;30694 30694 2 LALGIPLPELR ASKATGYPLAYVAAKLALGIPLPELRNSVT VAAKLALGIPLPELRNSVTGGTAAFEPSVD K L A L R N 1 1 0 0 0 0 1 1 0 1 4 0 0 0 2 0 0 0 0 0 0 0 11 0 1190.7387 Q53SY7;F8VPD4;P27708 Q53SY7 635 645 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00037059 83.783 2 0.84697 0.8885 1.2562 2 Median 0.84697 0.8885 1.2562 2 0 Median NaN NaN NaN 0 0 Median 44883000 23671000 21212000 44883000 23671000 21212000 0 0 0 7406 1259 7577 19616;19617 30695;30696;30697;30698 30696 4 LALGQINIAK YADLMNILYDKDHYKLALGQINIAKNLVDN KDHYKLALGQINIAKNLVDNVAKDYVRLMK K L A A K N 2 0 1 0 0 1 0 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1039.639 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;O60747;Q5T3R7 Q8N4P8 92 101 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 9.8899E-12 138.83 2 2 1.4371 1.4387 3.1614 4 Median 1.1965 1.4141 5.0761 2 0 Median 1.6751 1.4387 1.1148 2 0 Median 1195500000 513010000 682500000 984560000 430870000 553690000 210950000 82138000 128810000 7407 1183 7578 19618;19619;19620;19621 30699;30700;30701;30702;30703;30704;30705;30706 30702 8 LALHELK FIDQGKLIPDDVMTRLALHELKNLTQYSWL IPDDVMTRLALHELKNLTQYSWLLDGFPRT R L A L K N 1 0 0 0 0 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 822.49634 Q7Z4Y4;Q9UIJ7;B3KWD9;Q7Z531 Q7Z4Y4 74 80 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes no 2 0.062615 49.358 1 1.801 1.4283 NaN 1 Median NaN NaN NaN 0 0 Median 1.801 1.4283 NaN 1 0 Median 3996900 1465600 2531300 0 0 0 3996900 1465600 2531300 7408 1878 7579 19622 30707 30707 1 LALIAPK ISQAARKTGIHTSTRLALIAPKKELKEGDI TGIHTSTRLALIAPKKELKEGDIPEIEWWD R L A P K K 2 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 7 0 724.48471 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 356 362 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 2 0.026837 80.377 1 1.2702 1.2989 NaN 1 Median 1.2702 1.2989 NaN 1 0 Median NaN NaN NaN 0 0 Median 17386000 7742600 9643300 17386000 7742600 9643300 0 0 0 7409 848 7580 19623 30708 30708 1 LALIGGLEGFLSK PTVVSFGTVTTPADRLALIGGLEGFLSKMA DRLALIGGLEGFLSKMAEHRQQPDIRTLTL R L A S K M 1 0 0 0 0 0 1 3 0 1 4 1 0 1 0 1 0 0 0 0 0 0 13 0 1316.7704 Q3SYP6;Q3ZB84;A4D273;G3V325;B4DJ38;O75127 Q3SYP6 247 259 PTCD1;ATP5J2-PTCD1 Pentatricopeptide repeat-containing protein 1, mitochondrial yes no 2 0.0033389 63.624 2 1.5381 1.6078 4.9952 2 Median 1.5381 1.6078 4.9952 2 0 Median NaN NaN NaN 0 0 Median 8599800 3583600 5016100 8599800 3583600 5016100 0 0 0 7410 669 7581 19624;19625 30709;30710 30709 2 LALLEPVFPIACHR SRVAEETIKDYFEARLALLEPVFPIACHRL RLALLEPVFPIACHRLCEGPDFSTDFNYKP R L A H R L 2 1 0 0 1 0 1 0 1 1 3 0 0 1 2 0 0 0 0 1 0 0 14 0 1634.8967 Q99549;H0Y6J1 Q99549 742 755 MPHOSPH8 M-phase phosphoprotein 8 yes no 3 4.5412E-05 77.185 2 2 1.214 1.1282 29.051 4 Median 0.87597 0.87361 3.6734 2 0 Median 1.6895 1.4423 2.2398 2 0 Median 23985000 12154000 11832000 16397000 9461200 6935700 7588300 2692400 4895800 7411 1994 7582 19626;19627;19628;19629 30711;30712;30713;30714;30715;30716;30717;30718 30714 8 LALLHEGTGPR FVLSDEFSHLRPEQRLALLHEGTGPRVISA PEQRLALLHEGTGPRVISAFVEIIFDNSDN R L A P R V 1 1 0 0 0 0 1 2 1 0 3 0 0 0 1 0 1 0 0 0 0 0 11 0 1162.6459 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 62 72 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 3 0.0015855 46.844 1 0.96839 1.1243 NaN 1 Median 0.96839 1.1243 NaN 1 0 Median NaN NaN NaN 0 0 Median 58929000 28436000 30493000 58929000 28436000 30493000 0 0 0 7412 803 7583 19630 30719;30720 30720 2 LALLLSQFVGSQSVR ISEACSLAQQSGDHRLALLLSQFVGSQSVR LALLLSQFVGSQSVRELLTMQLVDWHQLQA R L A V R E 1 1 0 0 0 2 0 1 0 0 4 0 0 1 0 3 0 0 0 2 0 0 15 0 1616.925 P52948;H7C3P6 P52948 1358 1372 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 5.2631E-07 101.93 2 2 1.302 1.3247 15.661 4 Median 1.302 1.3247 10.213 2 0 Median 1.4135 1.2227 23.819 2 0 Median 30133000 13554000 16579000 24771000 11122000 13648000 5362600 2431900 2930700 7413 1603 7584 19631;19632;19633;19634 30721;30722;30723;30724;30725;30726 30723 5 LALLNEK EKDAQIAMMQQRIDRLALLNEKQAASPLEP MMQQRIDRLALLNEKQAASPLEPKELEELR R L A E K Q 1 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 261 267 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.039919 63.301 1 1 1.9615 1.6151 NaN 1 Median NaN NaN NaN 0 0 Median 1.9615 1.6151 NaN 1 0 Median 78888000 3495000 75393000 68399000 0 68399000 10489000 3495000 6993800 7414 186;1747;718 7585 19635;19636 30727;30728 30727 2 LALLQHLR ______________________________ WDQRLVRLALLQHLRAFYGIKVKGVRGQCD R L A L R A 1 1 0 0 0 1 0 0 1 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 962.60253 H3BR51;Q3KRB8;Q6P4F7 H3BR51 9 16 ARHGAP11A;ARHGAP11B Rho GTPase-activating protein 11B;Rho GTPase-activating protein 11A yes no 3 0.020184 43.246 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1817300 1817300 0 1817300 1817300 0 0 0 0 7415 1304 7586 19637 30729 30729 1 LALPGHAESYNPPPEYLLSEEER NAVLGRHKMHVPAPKLALPGHAESYNPPPE SYNPPPEYLLSEEERLAWEQQEPGERKLSF K L A E R L 2 1 1 0 0 0 5 1 1 0 4 0 0 0 4 2 0 0 2 0 0 0 23 0 2610.2602 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 305 327 BOP1 Ribosome biogenesis protein BOP1 yes no 3 2.3244E-12 90.308 2 2 1.071 1.0737 2.5363 4 Median 0.92221 1.0599 4.0408 2 0 Median 1.2367 1.0737 1.1433 2 0 Median 626860000 321820000 305040000 435700000 232830000 202870000 191170000 88998000 102170000 7416 1726 7587 19638;19639;19640;19641 30730;30731;30732;30733;30734;30735;30736;30737 30733 8 LALPQSDASLLSR ______________________________ QRLALPQSDASLLSRDEVASLLFDPKEAAT R L A S R D 2 1 0 1 0 1 0 0 0 0 4 0 0 0 1 3 0 0 0 0 0 0 13 0 1369.7565 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;Q6P664 B2RWN5 11 23 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 9.3579E-06 100.88 2 2 1.0671 1.0806 2.907 4 Median 0.92549 1.0806 2.2009 2 0 Median 1.2578 1.0905 4.4351 2 0 Median 610920000 303580000 307340000 496300000 249790000 246510000 114620000 53788000 60834000 7417 897 7588 19642;19643;19644;19645 30738;30739;30740;30741;30742;30743;30744;30745;30746 30739 9 LALQALTEK KQEQQAFKEAADTERLALQALTEKLLRSEE AADTERLALQALTEKLLRSEESVSRLPEEI R L A E K L 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 985.5808 B3KVX6;Q8TB01;Q6NWZ1;A0A024RBH2;Q07065 B3KVX6 266 274 CKAP4 Cytoskeleton-associated protein 4 yes no 2 0.029256 46.334 1 0.95824 0.96663 NaN 1 Median 0.95824 0.96663 NaN 1 0 Median NaN NaN NaN 0 0 Median 7849400 3171100 4678400 7849400 3171100 4678400 0 0 0 7418 338 7589 19646 30747 30747 1 LALSPNAQVLALASGSSIHLYNTR KTGRFEEAAGAAPCRLALSPNAQVLALASG LALASGSSIHLYNTRRGEKEECFERVHGEC R L A T R R 4 1 2 0 0 1 0 1 1 1 5 0 0 0 1 4 1 0 1 1 0 0 24 0 2495.3496 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;Q96E41;B4DY59 E9PF19 301 324 TBL2 Transducin beta-like protein 2 yes no 3 3.7518E-16 91.733 2 2 0.91198 0.8372 14.733 4 Median 0.89281 0.97078 9.1204 2 0 Median 0.91643 0.76506 0.92679 2 0 Median 133700000 71860000 61835000 85972000 45881000 40091000 47724000 25980000 21745000 7419 582 7590 19647;19648;19649;19650 30748;30749;30750;30751;30752;30753;30754;30755;30756;30757 30753 10 LALSQNQQSSGAAGPTGK LLAEVERRIRRGHARLALSQNQQSSGAAGP SQNQQSSGAAGPTGKNEEKIQVLTDKIDVL R L A G K N 3 0 1 0 0 3 0 3 0 0 2 1 0 0 1 3 1 0 0 0 0 0 18 0 1713.8646 Q6PKC2;Q86Y74;B4DJ96;A8K3C5;J3KPP4;O95232;D6RDI2 Q6PKC2 107 124 CROP;LUC7L3 Luc7-like protein 3 yes no 2 3.0304E-12 110.38 2 1 0.35816 0.32193 16.614 2 Median 0.3555 0.36206 NaN 1 0 Median 0.36085 0.28624 NaN 1 0 Median 30611000 23565000 7045500 26067000 20236000 5831100 4543800 3329400 1214400 7420 722 7591 19651;19652;19653 30758;30759;30760;30761 30760 4 LALSVGTDK HKGQVTFLSIHPSGKLALSVGTDKTLRTWN IHPSGKLALSVGTDKTLRTWNLVEGRSAFI K L A D K T 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 902.5073 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 137 145 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 2.2298E-05 116.25 2 2 1.0622 1.0168 8.9498 4 Median 0.95868 1.105 4.8321 2 0 Median 1.1683 0.95487 1.955 2 0 Median 491270000 227200000 264070000 432480000 201830000 230660000 58787000 25374000 33412000 7421 580 7592 19654;19655;19656;19657 30762;30763;30764;30765 30762 4 LALTGVPIVQWPK DVKILLEELANSDPKLALTGVPIVQWPKRD PKLALTGVPIVQWPKRDKLKFPTRPKVRVP K L A P K R 1 0 0 0 0 1 0 1 0 1 2 1 0 0 2 0 1 1 0 2 0 0 13 0 1420.8442 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 489 501 KDM2A Lysine-specific demethylase 2A yes no 2 0.00049974 61.65 1 1 0.61298 0.55623 37.039 2 Median 0.43081 0.42807 NaN 1 0 Median 0.87218 0.72276 NaN 1 0 Median 7897600 4507400 3390200 6158000 3796800 2361200 1739700 710610 1029000 7422 1323 7593 19658;19659 30766;30767;30768 30766 3 LALVISELEGK GREKFKSRGVGELARLALVISELEGKAQQP ELARLALVISELEGKAQQPAAELMQDTRDF R L A G K A 1 0 0 0 0 0 2 1 0 1 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1170.686 A0A024RCP3;Q12899;A2AE48 A0A024RCP3 235 245 TRIM26 Tripartite motif-containing protein 26 yes no 2 4.6535E-10 130.66 2 0.67478 0.70009 7.5097 2 Median 0.67478 0.70009 7.5097 2 0 Median NaN NaN NaN 0 0 Median 61863000 35414000 26449000 61863000 35414000 26449000 0 0 0 7423 365 7594 19660;19661 30769;30770;30771;30772 30770 4 LALVTGGEIASTFDHPELVK GVMAIEHADFAGVERLALVTGGEIASTFDH GGEIASTFDHPELVKLGSCKLIEEVMIGED R L A V K L 2 0 0 1 0 0 2 2 1 1 3 1 0 1 1 1 2 0 0 2 0 0 20 0 2096.1154 F8VQ14;F5GWF6;V9HW96;P78371;B7Z4R3 F8VQ14 323 342 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 3 2.4046E-08 86.8 2 1 3.6528 3.9479 29.704 3 Median 3.9364 4.126 6.2402 2 0 Median 3.1064 2.4807 NaN 1 0 Median 82005000 19250000 62755000 72810000 16121000 56688000 9195200 3128400 6066800 7424 1255 7595 19662;19663;19664 30773;30774;30775;30776;30777;30778 30775 6 LAMQLEEQASR AKHFSALRDVIKALRLAMQLEEQASRQISS KALRLAMQLEEQASRQISSKKRPQ______ R L A S R Q 2 1 0 0 0 2 2 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 11 0 1274.6289 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1 A8K3S3 706 716 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 9.3472E-06 105.2 2 1.4444 1.4953 5.9933 2 Median 1.4444 1.4953 5.9933 2 0 Median NaN NaN NaN 0 0 Median 37134000 16094000 21040000 37134000 16094000 21040000 0 0 0 7425 626 7596 19665;19666 30779;30780;30781;30782 30782 484 4 LANFIPWGPASIQVALSR PTQVHKSLQRIRERKLANFIPWGPASIQVA FIPWGPASIQVALSRKSPYLPSAHRVSGLM K L A S R K 3 1 1 0 0 1 0 1 0 2 2 0 0 1 2 2 0 1 0 1 0 0 18 0 1939.068 A0A1B4Z394;Q9NRH3;P23258 A0A1B4Z394 354 371 TUBG2;TUBG1 Tubulin gamma-2 chain;Tubulin gamma-1 chain yes no 2 0.010759 41.242 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2221200 0 2221200 2221200 0 2221200 0 0 0 7426 637 7597 19667 30783 30783 1 LANILFTQELAR GEKFYNAGLAYCHSKLANILFTQELARRLK HSKLANILFTQELARRLKGSGVTTYSVHPG K L A A R R 2 1 1 0 0 1 1 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 12 0 1387.7823 H0YIZ8;G3V2G6;B3KQ19;A0A0S2Z583;Q8TC12;H0YJ10;G3V234;H0YJ46;A0A0S2Z575 H0YIZ8 38 49 RDH11 Retinol dehydrogenase 11 yes no 2 0.00033594 90.05 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16592000 0 16592000 16592000 0 16592000 0 0 0 7427 577 7598 19668;19669 30784;30785 30784 2 LANLPEEVIQK IKGACPKSYGFNAARLANLPEEVIQKGHRK NAARLANLPEEVIQKGHRKAREFEKMNQSL R L A Q K G 1 0 1 0 0 1 2 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1252.7027 P52701;A0A087WYT6;Q6LAI4 P52701 1305 1315 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.0004027 81.263 1 1.0205 1.0448 NaN 1 Median 1.0205 1.0448 NaN 1 0 Median NaN NaN NaN 0 0 Median 25608000 12648000 12960000 25608000 12648000 12960000 0 0 0 7428 1601 7599 19670 30786;30787 30786 2 LAPAHVDEQVFLYENAR LFGSAANVVSAKRNRLAPAHVDEQVFLYEN PAHVDEQVFLYENARSGAEAEPEDQDEGEW R L A A R S 3 1 1 1 0 1 2 0 1 0 2 0 0 1 1 0 0 0 1 2 0 0 17 0 1970.985 A0A024RBU4;O96006 A0A024RBU4 636 652 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 3 0.057308 12.714 1 0.77656 0.69234 NaN 1 Median NaN NaN NaN 0 0 Median 0.77656 0.69234 NaN 1 0 Median 1955300 1277900 677360 0 0 0 1955300 1277900 677360 7429 347 7600 19671 30788 30788 1 LAPDYDALDVANK NTLIRPDGEKKAYVRLAPDYDALDVANKIG VRLAPDYDALDVANKIGII___________ R L A N K I 3 0 1 3 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 13 0 1403.6933 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7;B9EJE3 H7BY10 142 154 RPL23A;RPL23AL 60S ribosomal protein L23a yes no 2 2.058E-13 129.16 4 2 0.72489 0.75424 4.4008 4 Median 0.64033 0.77513 0.21015 2 0 Median 0.80665 0.72157 2.6064 2 0 Median 12590000000 7585700000 5004500000 10857000000 6637400000 4219400000 1733400000 948290000 785120000 7430 796 7601 19672;19673;19674;19675;19676;19677 30789;30790;30791;30792;30793;30794;30795;30796;30797;30798;30799;30800;30801;30802;30803;30804;30805;30806;30807;30808;30809;30810;30811;30812;30813;30814 30796 26 LAPGGHVGR PGITLLNVSKLNILKLAPGGHVGRFCIWTE KLNILKLAPGGHVGRFCIWTESAFRKLDEL K L A G R F 1 1 0 0 0 0 0 3 1 0 1 0 0 0 1 0 0 0 0 1 0 0 9 0 862.47733 P36578;Q59GY2;B4DMJ6;H3BM89;Q53G74;B4DMJ2 P36578 240 248 RPL4 60S ribosomal protein L4 yes no 2 0.004147 69.998 1 1 0.9014 0.89157 18.249 2 Median 0.88098 1.0144 NaN 1 0 Median 0.92229 0.78364 NaN 1 0 Median 153250000 81396000 71854000 147990000 78634000 69355000 5261100 2762400 2498700 7431 1548 7602 19678;19679 30815;30816 30815 2 LAPITSDPTEATAVGAVEASFK EAAIYHLQLFEELRRLAPITSDPTEATAVG PTEATAVGAVEASFKCCSGAIIVLTKSGRS R L A F K C 5 0 0 1 0 0 2 1 0 1 1 1 0 1 2 2 3 0 0 2 0 0 22 0 2174.1107 V9HWB8;P14618;B4DNK4;Q8WUW7;Q9UKK4;Q9UK31 V9HWB8 401 422 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 1.3803E-11 96.208 2 2 2.2218 3.285 45.471 4 Linear 2.8118 3.1391 1.9909 2 0 Median 1.7441 1.4285 0.15179 2 0 Median 179650000 51322000 128330000 121460000 29878000 91583000 58188000 21443000 36744000 7432 1481 7603 19680;19681;19682;19683 30817;30818;30819;30820;30821;30822;30823;30824 30824 8 LAQAEAAGLHK TDTTVNSVVKMTEEKLAQAEAAGLHKVFKL TEEKLAQAEAAGLHKVFKLQTTLTCNSMVL K L A H K V 4 0 0 0 0 1 1 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1107.6037 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 970 980 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 6.272E-08 109.66 3 2 0.78942 0.74641 19.283 4 Median 0.55663 0.62412 7.9696 2 0 Median 1.0666 0.86201 3.0288 2 0 Median 177170000 122470000 54702000 162190000 115000000 47190000 14982000 7470000 7512300 7433 1679 7604 19684;19685;19686;19687;19688 30825;30826;30827;30828;30829;30830;30831;30832;30833;30834 30828 10 LAQALHEMR LVEVDSGRQIEYEYKLAQALHEMREQHDAQ IEYEYKLAQALHEMREQHDAQVRLYKEELE K L A M R E 2 1 0 0 0 1 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1067.5546 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 242 250 LMNB1 Lamin-B1 yes no 2 0.00013702 103.55 2 1.6451 1.7397 8.9133 2 Median 1.6451 1.7397 8.9133 2 0 Median NaN NaN NaN 0 0 Median 51696000 19717000 31979000 51696000 19717000 31979000 0 0 0 7434 1502 7605 19689;19690 30835;30836;30837;30838;30839 30839 1259 5 LAQDPYR QDSAMLGSKSPDPYRLAQDPYRLAQDPYRL SKSPDPYRLAQDPYRLAQDPYRLGHDPYRL R L A Y R L 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 0 861.43447 P18583 P18583 916 922 SON Protein SON yes no 2 0.032702 81.381 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7293600 7293600 0 7293600 7293600 0 0 0 0 7435 1499 7606 19691 30840 30840 1 LAQEGIYTLYPFINSR WCRNNSGEEFDCAFRLAQEGIYTLYPFINS AQEGIYTLYPFINSRIITVSMEDVKILLTQ R L A S R I 1 1 1 0 0 1 1 1 0 2 2 0 0 1 1 1 1 0 2 0 0 0 16 0 1883.9781 Q08J23 Q08J23 603 618 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 8.3788E-07 97.463 2 2 1.0131 0.96967 45.254 4 Median 1.2873 1.4281 1.6385 2 0 Median 0.80065 0.65263 2.8781 2 0 Median 125020000 60230000 64789000 99384000 45939000 53445000 25635000 14291000 11344000 7436 1694 7607 19692;19693;19694;19695 30841;30842;30843;30844;30845;30846;30847;30848;30849 30845 9 LAQEPLGLEVDQFLEDVR RRRRGPRNKKRGWRRLAQEPLGLEVDQFLE EPLGLEVDQFLEDVRLQERTSGGLLSEAPN R L A V R L 1 1 0 2 0 2 3 1 0 0 4 0 0 1 1 0 0 0 0 2 0 0 18 0 2070.0633 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4DVK1;B4E013 Q7L4X7 47 64 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 2.3371E-23 124.62 2 1.0218 1.1237 NaN 1 Median 1.0218 1.1237 NaN 1 0 Median NaN NaN NaN 0 0 Median 62859000 42471000 20388000 62859000 42471000 20388000 0 0 0 7437 1068 7608 19696;19697 30850;30851 30850 2 LAQETDIFK EQIKEKKAAKEEEKRLAQETDIFKKKKRKG KEEEKRLAQETDIFKKKKRKGQEDRRKSKK R L A F K K 1 0 0 1 0 1 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1063.555 Q8NDD1;Q5TBH9;Q5TBI2 Q8NDD1 231 239 C1orf131 Uncharacterized protein C1orf131 yes no 2 0.00016738 94.114 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6317900 0 6317900 6317900 0 6317900 0 0 0 7438 1925 7609 19698 30852 30852 1 LAQFDYGR KYVLKPATEGKQRLKLAQFDYGRKCSEVAR EGKQRLKLAQFDYGRKCSEVARLTEGMSGR K L A G R K 1 1 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 968.47158 Q9NVI7;H0Y2W2;Q96T67;Q5T9A4;Q9H834;Q5T2N8;Q5SV16;Q8N3E6 Q9NVI7 554 561 ATAD3A;ATAD3B;ATAD3C;DKFZp761L1023 ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3C yes no 2 0.011008 70.919 1 1.3333 1.3875 NaN 1 Median 1.3333 1.3875 NaN 1 0 Median NaN NaN NaN 0 0 Median 21934000 9376100 12557000 21934000 9376100 12557000 0 0 0 7439 2074 7610 19699 30853 30853 1 LAQFEPSQR PPEDPSVPVALNIGKLAQFEPSQRQNQVGV ALNIGKLAQFEPSQRQNQVGVVPWSPPQSN K L A Q R Q 1 1 0 0 0 2 1 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 9 0 1074.5458 Q08211;Q58F26;Q6PJK6 Q08211 315 323 DHX9 ATP-dependent RNA helicase A yes no 2 0.00033904 101.54 1 1.2008 1.3857 NaN 1 Median 1.2008 1.3857 NaN 1 0 Median NaN NaN NaN 0 0 Median 239590000 111870000 127720000 239590000 111870000 127720000 0 0 0 7440 1691 7611 19700 30854 30854 1 LAQFIGNR PELVKIINDNATYCRLAQFIGNRRELNEDK DNATYCRLAQFIGNRRELNEDKLEKLEELT R L A N R R 1 1 1 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 917.5083 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 213 220 NOP56 Nucleolar protein 56 yes no 2 0.003183 97.596 2 2 0.87271 0.80439 10.4 4 Median 0.75739 0.88816 13.837 2 0 Median 0.92044 0.79266 1.9047 2 0 Median 745750000 412800000 332950000 683280000 380150000 303140000 62466000 32656000 29809000 7441 785 7612 19701;19702;19703;19704 30855;30856;30857;30858;30859 30857 5 LAQFIGNRR PELVKIINDNATYCRLAQFIGNRRELNEDK NATYCRLAQFIGNRRELNEDKLEKLEELTM R L A R R E 1 2 1 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 9 1 1073.6094 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 213 221 NOP56 Nucleolar protein 56 yes no 3 0.015185 30.254 1 0.93837 0.85648 NaN 1 Median NaN NaN NaN 0 0 Median 0.93837 0.85648 NaN 1 0 Median 8379400 4185900 4193400 0 0 0 8379400 4185900 4193400 7442 785 7613 19705 30860 30860 1 LAQGHTTVDELAR RLQEAGILSAEELQRLAQGHTTVDELARRE QRLAQGHTTVDELARREDVRHYLQGRSSIA R L A A R R 2 1 0 1 0 1 1 1 1 0 2 0 0 0 0 0 2 0 0 1 0 0 13 0 1409.7263 Q15149;D3DWL0 Q15149 2809 2821 PLEC;PLEC1 Plectin yes no 2;3 1.3842E-14 133.05 4 1 1.9104 2.1042 0.93577 5 Median 1.8847 2.1112 1.0393 4 0 Median 2.5229 2.0931 NaN 1 0 Median 278080000 98621000 179460000 272740000 97164000 175570000 5339700 1457300 3882400 7443 1754 7614 19706;19707;19708;19709;19710 30861;30862;30863;30864;30865;30866;30867;30868;30869 30867 9 LAQGLTHLGK AQYHAKDPNNLFMVRLAQGLTHLGKGTLTL LFMVRLAQGLTHLGKGTLTLCPYHSDRQLM R L A G K G 1 0 0 0 0 1 0 2 1 0 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1036.6029 Q59EG8;Q13200;B4DM22;Q13041 Q59EG8 769 778 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2;3 0.0010279 77.355 4 2.503 2.5393 13.576 4 Median 2.503 2.5393 13.576 4 0 Median NaN NaN NaN 0 0 Median 111580000 32289000 79289000 111580000 32289000 79289000 0 0 0 7444 1707 7615 19711;19712;19713;19714 30870;30871;30872;30873;30874 30871 5 LAQICSSIR LDPEALGNIKKLSNRLAQICSSIRTHK___ KKLSNRLAQICSSIRTHK____________ R L A I R T 1 1 0 0 1 1 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 0 9 0 1046.5543 Q53HL2;A8K7A2 Q53HL2 269 277 CDCA8 Borealin yes no 2 0.0012793 87.476 2 0.87728 0.99748 2.0655 2 Median 0.87728 0.99748 2.0655 2 0 Median NaN NaN NaN 0 0 Median 242760000 128420000 114330000 242760000 128420000 114330000 0 0 0 7445 1789 7616 19715;19716 30875;30876;30877;30878 30876 4 LAQLTLEQILEHLDNLR SLPRKRQSLRSSSSKLAQLTLEQILEHLDN QLTLEQILEHLDNLRLNLTNTKQNFFSQTP K L A L R L 1 1 1 1 0 2 2 0 1 1 6 0 0 0 0 0 1 0 0 0 0 0 17 0 2018.116 Q68E01 Q68E01 916 932 INTS3 Integrator complex subunit 3 yes yes 3 1.4408E-26 149.57 1 1.1949 1.2334 NaN 1 Median 1.1949 1.2334 NaN 1 0 Median NaN NaN NaN 0 0 Median 37007000 19293000 17714000 37007000 19293000 17714000 0 0 0 7446 1840 7617 19717 30879;30880 30879 2 LAQNILSYLDLK QGEEKCKAARKQAVRLAQNILSYLDLKSDE AVRLAQNILSYLDLKSDEWEY_________ R L A L K S 1 0 1 1 0 1 0 0 0 1 4 1 0 0 0 1 0 0 1 0 0 0 12 0 1389.7868 A8K5J7;A0A024R6M6;Q9UL15 A8K5J7 430 441 BAG5 BAG family molecular chaperone regulator 5 yes no 2 0.00077083 66.056 2 0.9649 1.0154 1.0261 2 Median 0.9649 1.0154 1.0261 2 0 Median NaN NaN NaN 0 0 Median 8306500 3524300 4782100 8306500 3524300 4782100 0 0 0 7447 205 7618 19718;19719 30881;30882 30882 2 LAQPYVGVFLK VKNKKLVELLRRKVRLAQPYVGVFLKRDDS RKVRLAQPYVGVFLKRDDSNESDVVESLDE R L A L K R 1 0 0 0 0 1 0 1 0 0 2 1 0 1 1 0 0 0 1 2 0 0 11 0 1233.7121 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7EQF8 K7EJE8 45 55 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.017971 54.436 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7448 946 7619 19720;19721 30883;30884 30884 2 LAQQMENRPSVQAALK SMQQQQQLASARNRRLAQQMENRPSVQAAL AQQMENRPSVQAALKLKQSLKQRLGKSNIQ R L A L K L 3 1 1 0 0 3 1 0 0 0 2 1 1 0 1 1 0 0 0 1 0 0 16 1 1782.9411 X6R700;Q9Y3Y2;A0A087X1B7;Q5T7Y7 X6R700 30 45 CHTOP Chromatin target of PRMT1 protein yes no 3 0.00035954 45.207 1 0.73572 0.79879 NaN 1 Median 0.73572 0.79879 NaN 1 0 Median NaN NaN NaN 0 0 Median 15523000 8744200 6778500 15523000 8744200 6778500 0 0 0 7449 2141 7620 19722 30885 30885 1983 1 LAQQQAALLMQQEER RVGEPVALSEEERLKLAQQQAALLMQQEER LAQQQAALLMQQEERAKQQGDHSLKEHELL K L A E R A 3 1 0 0 0 5 2 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 15 0 1755.8938 Q13435;Q7Z3K9;E9PPJ0;E9PJ04;H0YCG1;E9PJT3 Q13435 149 163 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 2 0.014227 42.095 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7450 1713 7621 19723 30886 30886 1542 1 LAQQVCHAIANISDR LVSIGLDEKFPQDYRLAQQVCHAIANISDR LAQQVCHAIANISDRRKTSLGKRHPPFRLP R L A D R R 3 1 1 1 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 1 0 0 15 0 1694.8522 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 811 825 NCAPD2 Condensin complex subunit 1 yes no 2;3 5.246E-11 117 4 4 1.2813 1.0891 16.672 5 Median 0.78718 0.89008 6.5852 2 0 Median 1.4029 1.2238 7.1358 3 0 Median 210640000 101260000 109370000 140400000 74034000 66368000 70235000 27228000 43006000 7451 908 7622 19724;19725;19726;19727;19728;19729;19730;19731 30887;30888;30889;30890;30891;30892;30893;30894;30895;30896;30897 30890 11 LASAAYPDPSK LDPIREKFNTPALKKLASAAYPDPSKQKPM ALKKLASAAYPDPSKQKPMAKGPAKNSEPE K L A S K Q 3 0 0 1 0 0 0 0 0 0 1 1 0 0 2 2 0 0 1 0 0 0 11 0 1118.5608 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 336 346 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 4.4109E-05 99.973 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14735000 0 14735000 14735000 0 14735000 0 0 0 7452 567 7623 19732 30898 30898 1 LASAFTEEQAVLYNQR AAIEAFNKCKTIYEKLASAFTEEQAVLYNQ ASAFTEEQAVLYNQRVEEISPNIRYCAYNI K L A Q R V 3 1 1 0 0 2 2 0 0 0 2 0 0 1 0 1 1 0 1 1 0 0 16 0 1838.9163 Q9UHB9;B4DVI7;B3KMI9 Q9UHB9 221 236 SRP68 Signal recognition particle subunit SRP68 yes no 2 9.6482E-13 113.22 3 2 1.3877 1.1809 4.7752 2 Median NaN NaN NaN 0 0 Median 1.3877 1.1809 4.7752 2 0 Median 15972000 11540000 4431700 7694200 7694200 0 8278000 3846300 4431700 7453 2101 7624 19733;19734;19735;19736;19737 30899;30900;30901;30902;30903;30904;30905 30899 7 LASAGVDTNVR YSLDFQHGTAGRIHRLASAGVDTNVRIWKV RIHRLASAGVDTNVRIWKVEKGPDGKAIVE R L A V R I 2 1 1 1 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 2 0 0 11 0 1101.5778 B2R7X3;Q13112 B2R7X3 32 42 CHAF1B Chromatin assembly factor 1 subunit B yes no 2 0.00038172 77.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7454 856 7625 19738 30906 30906 1 LASAQEVAGSTSAK RSSARLKARSCSAARLASAQEVAGSTSAKT RLASAQEVAGSTSAKTACLTSSSHKATDTR R L A A K T 4 0 0 0 0 1 1 1 0 0 1 1 0 0 0 3 1 0 0 1 0 0 14 0 1318.6729 Q8IYL3 Q8IYL3 26 39 C1orf174 UPF0688 protein C1orf174 yes yes 2 0.0054583 55.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7455 1900 7626 19739 30907 30907 1 LASDESLWQTLDLTGK PELLKVSGVCKRWYRLASDESLWQTLDLTG ASDESLWQTLDLTGKNLHPDVTGRLLSQGV R L A G K N 1 0 0 2 0 1 1 1 0 0 4 1 0 0 0 2 2 1 0 0 0 0 16 0 1775.8941 D6R9R7;B4DHK6;A0A024R069;A0A0A0MTL5;Q13309 D6R9R7 130 145 SKP2 S-phase kinase-associated protein 2 yes no 2 0.00013565 76.522 1 1.085 1.0946 NaN 1 Median 1.085 1.0946 NaN 1 0 Median NaN NaN NaN 0 0 Median 7862000 3342300 4519700 7862000 3342300 4519700 0 0 0 7456 38 7627 19740 30908;30909;30910 30908 3 LASDLLEWIR AVNQENEHLMEDYEKLASDLLEWIRRTIPW EDYEKLASDLLEWIRRTIPWLEDRVPQKTI K L A I R R 1 1 0 1 0 0 1 0 0 1 3 0 0 0 0 1 0 1 0 0 0 0 10 0 1214.6659 A0A0S2Z3G9;O43707;Q96BG6;B4DSX0;K7EJH8;Q86TX4;A0A024R694;P12814;G3V2W4;H9KV75;B7Z565 A0A0S2Z3G9 301 310 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 yes no 2 0.023588 53.683 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 687860 0 687860 0 0 0 687860 0 687860 7457 548 7628 19741 30911 30911 1 LASDNVSIDQFLR SSEARFSSKNIKDLRLASDNVSIDQFLRKR LRLASDNVSIDQFLRKRHEPESVSSDVSEQ R L A L R K 1 1 1 2 0 1 0 0 0 1 2 0 0 1 0 2 0 0 0 1 0 0 13 0 1476.7573 A8K124;B4DHL1;A0A024R5W1;Q6N043 A8K124 873 885 SUHW4;ZNF280D Zinc finger protein 280D yes no 2 0.003824 63.727 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4085700 0 4085700 0 0 0 4085700 0 4085700 7458 189 7629 19742;19743 30912;30913 30912 2 LASEEPPDDEEALATIR LIASTFVDQCKTVLKLASEEPPDDEEALAT SEEPPDDEEALATIRLLDVLCEMTVNTELL K L A I R L 3 1 0 2 0 0 4 0 0 1 2 0 0 0 2 1 1 0 0 0 0 0 17 0 1854.8847 Q9UBB4;B1AHE4 Q9UBB4 289 305 ATXN10 Ataxin-10 yes no 2 0.014886 28.624 1 1.1342 1.1212 NaN 1 Median 1.1342 1.1212 NaN 1 0 Median NaN NaN NaN 0 0 Median 15179000 7165300 8013300 15179000 7165300 8013300 0 0 0 7459 2095 7630 19744 30914 30914 1 LASFFLSR CMTYFPRACGSLKGKLASFFLSRVDALSPQ CGSLKGKLASFFLSRVDALSPQLQQLACEC K L A S R V 1 1 0 0 0 0 0 0 0 0 2 0 0 2 0 2 0 0 0 0 0 0 8 0 939.5178 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;E7EV54;B4DEX7;I3L445;I3L4P1 O15451 186 193 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 0.0046737 101.41 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7460 746 7631 19745 30915 30915 1 LASGVEGSDIPDDGK KIVEEPQSNRSVTFKLASGVEGSDIPDDGK LASGVEGSDIPDDGKLIGFAQLSIS_____ K L A G K L 1 0 0 3 0 0 1 3 0 1 1 1 0 0 1 2 0 0 0 1 0 0 15 0 1458.6838 A0A024R2M7;O95747 A0A024R2M7 503 517 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 1.4539E-07 109.72 1 2 1.9832 1.6443 7.393 3 Median 1.5833 1.561 NaN 1 0 Median 2.0578 1.7233 6.6395 2 0 Median 28528000 10077000 18451000 24702000 8510900 16191000 3826400 1566300 2260000 7461 117 7632 19746;19747;19748 30916;30917;30918;30919 30917 4 LASIVEQVSVLQNQGR AVVTRGDECGLALGRLASIVEQVSVLQNQG ASIVEQVSVLQNQGREMMLVTSGAVAFGKQ R L A G R E 1 1 1 0 0 3 1 1 0 1 2 0 0 0 0 2 0 0 0 3 0 0 16 0 1739.953 P54886 P54886 95 110 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 6.0714E-09 109.24 2 2 1.9025 2.2198 21.993 4 Linear 1.9849 2.2028 3.197 2 0 Median 1.8105 1.5085 2.7435 2 0 Median 116340000 41025000 75320000 98318000 33925000 64393000 18027000 7099900 10927000 7462 1611 7633 19749;19750;19751;19752 30920;30921;30922;30923 30920 4 LASLFSSLEPQIQPVYVPVPK SLFRGEHHSRGGTGRLASLFSSLEPQIQPV SLEPQIQPVYVPVPKQTIKKTKRNEEEEST R L A P K Q 1 0 0 0 0 2 1 0 0 1 3 1 0 1 4 3 0 0 1 3 0 0 21 0 2311.2828 P42696;A2A2V2;Q5TCT4;H7C5M1 P42696 56 76 RBM34 RNA-binding protein 34 yes no 2 5.0577E-06 49.12 2 0.99704 1.0687 6.9678 2 Median 0.99704 1.0687 6.9678 2 0 Median NaN NaN NaN 0 0 Median 73038000 35320000 37718000 73038000 35320000 37718000 0 0 0 7463 1566 7634 19753;19754 30924;30925;30926;30927 30926 4 LASLGLK LTPLGREQAELTGLRLASLGLKFNKIVHSS QAELTGLRLASLGLKFNKIVHSSMTRAIET R L A L K F 1 0 0 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 700.44833 Q96HS1 Q96HS1 135 141 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.014014 101.21 2 1.9971 2.1905 6.3358 2 Median 1.9971 2.1905 6.3358 2 0 Median NaN NaN NaN 0 0 Median 129130000 42870000 86264000 129130000 42870000 86264000 0 0 0 7464 1972 7635 19755;19756 30928;30929;30930;30931 30930 4 LASLNAEALNNLLLER PSSEDPGLAQPRKRRLASLNAEALNNLLLE ASLNAEALNNLLLEREDTSSLAGTRRSRAG R L A E R E 3 1 3 0 0 0 2 0 0 0 6 0 0 0 0 1 0 0 0 0 0 0 16 0 1752.9734 A0A024R9K2;Q8TBE0 A0A024R9K2 119 134 BAHD1 Bromo adjacent homology domain-containing 1 protein yes no 2 0.00038789 51.135 1 1.5305 1.5444 NaN 1 Median 1.5305 1.5444 NaN 1 0 Median NaN NaN NaN 0 0 Median 5918500 2315700 3602800 5918500 2315700 3602800 0 0 0 7465 281 7636 19757 30932 30932 1 LASQLTESSQTSISLESDLK SSCKAKNILTKAKNKLASQLTESSQTSISL TESSQTSISLESDLKHITSEADSDPGNPVE K L A L K H 1 0 0 1 0 2 2 0 0 1 4 1 0 0 0 6 2 0 0 0 0 0 20 0 2136.0798 Q562F6;B7Z7S9 Q562F6 1005 1024 SGOL2 Shugoshin-like 2 yes no 2 0.0042975 48.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7466 1795 7637 19758 30933 30933 1 LASSDDFISQNVIPLEAYR LNSRRIIPRPFVAQKLASSDDFISQNVIPL DDFISQNVIPLEAYRNGLKTEALSVSASEE K L A Y R N 2 1 1 2 0 1 1 0 0 2 2 0 0 1 1 3 0 0 1 1 0 0 19 0 2137.0691 A7E234;Q9H582;Q9NVH8;Q9H8J8;Q8NEI6 A7E234 1110 1128 ZNF644 Zinc finger protein 644 yes no 2 0.010087 26.124 1 0.45905 0.45636 NaN 1 Median 0.45905 0.45636 NaN 1 0 Median NaN NaN NaN 0 0 Median 8447800 5178100 3269600 8447800 5178100 3269600 0 0 0 7467 693 7638 19759 30934 30934 1 LASSVLR ______________________________ ______________________________ R L A L R C 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 7 0 744.44939 J3QR09;J3KTE4;Q53G49;P84098;J3QL15 J3QR09 7 13 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 0.022316 92.191 2 0.84541 0.98924 2.1772 2 Median 0.84541 0.98924 2.1772 2 0 Median NaN NaN NaN 0 0 Median 551800000 315700000 236100000 551800000 315700000 236100000 0 0 0 7468 1331 7639 19760;19761 30935;30936;30937;30938 30936 4 LASTIADNQEQDLEK QCENLKDTVENLTAKLASTIADNQEQDLEK LASTIADNQEQDLEKTRQYSQKLGLLTEQL K L A E K T 2 0 1 2 0 2 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 15 0 1673.8108 A8K8N3;Q96R06;K7ELC8;E9PMD0 A8K8N3 852 866 SPAG5 Sperm-associated antigen 5 yes no 2 4.5138E-07 103.46 2 0.69598 0.71532 13.615 2 Median 0.69598 0.71532 13.615 2 0 Median NaN NaN NaN 0 0 Median 27596000 17644000 9951100 27596000 17644000 9951100 0 0 0 7469 779 7640 19762;19763 30939;30940 30939 2 LASTNSSVLGADLPSSMK EEEEAEAETAKATPRLASTNSSVLGADLPS TNSSVLGADLPSSMKEKAKAETEKAGKTGN R L A M K E 2 0 1 1 0 0 0 1 0 0 3 1 1 0 1 5 1 0 0 1 0 0 18 0 1776.8928 E7ETY2;H0YA99;Q13428 Q13428 105 122 TCOF1 Treacle protein no no 2 4.9348E-17 121.18 2 2 1.1891 1.1081 7.2882 4 Median 1.0446 1.1336 8.6599 2 0 Median 1.3506 1.087 8.1684 2 0 Median 84088000 39737000 44351000 74342000 35331000 39012000 9745300 4405800 5339500 7470 1712;1225 7641;7642 19764;19765;19766;19767 30941;30942;30943;30944;30945;30946 30944 935 6 LASTPFK LWLKDCKINLASKNKLASTPFKGGTLFGGE INLASKNKLASTPFKGGTLFGGEVCKVIKK K L A F K G 1 0 0 0 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 7 0 762.42759 P42166 P42166 668 674 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.037563 60.788 1 1.5114 1.6402 NaN 1 Median 1.5114 1.6402 NaN 1 0 Median NaN NaN NaN 0 0 Median 22250000 8986200 13264000 22250000 8986200 13264000 0 0 0 7471 1562 7643 19768 30947 30947 1 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK NGKNIEDVIAQGIGKLASVPAGGAVAVSAA AAPAAGSAPAAAEEKKDEKKEESEESDDDM K L A E K K 14 0 0 0 0 0 2 4 0 0 1 1 0 0 4 4 0 0 0 3 0 0 33 0 2773.4246 A0A024RCA7;P05387;H0YDD8 A0A024RCA7 62 94 RPLP2 60S acidic ribosomal protein P2 yes no 3 0.028734 11.344 1 0.7534 0.83388 NaN 1 Median 0.7534 0.83388 NaN 1 0 Median NaN NaN NaN 0 0 Median 57971000 31890000 26081000 57971000 31890000 26081000 0 0 0 7472 356 7644 19769 30948;30949 30949 2 LASYLDK LSGNEKVTMQNLNDRLASYLDKVRALEESN TMQNLNDRLASYLDKVRALEESNYELEGKI R L A D K V 1 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 7 0 808.43307 CON__P05784;B4DJM5;CON__Q99456;Q99456;CON__P02533;P02533;CON__A2A4G1;CON__Q04695;Q04695;K7EPJ9;B4E2P9;CON__P08779;P08779;B4DWU0;B4E2J5;CON__P13645;P13645;CON__P35527;P35527 CON__P13645 157 163 KRT12;KRT14;KRT17;KRT16;KRT10;KRT9 Keratin, type I cytoskeletal 12;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 9 no no 2 0.030367 85.265 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1403300000 1403300000 0 1235900000 1235900000 0 167450000 167450000 0 + 7473 1161;1165;1150;1159;1168;1155 7645 19770;19771;19772;19773 30950;30951;30952;30953;30954 30951 5 LASYLDR GIQNEKETMQSLNDRLASYLDRVRSLETEN TMQSLNDRLASYLDRVRSLETENRRLESKI R L A D R V 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 7 0 836.43922 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 91 97 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.017985 96.51 2 1 1.073 1.267 1.2393 2 Median 1.073 1.267 1.2393 2 0 Median NaN NaN NaN 0 0 Median 1532100000 718380000 813680000 1514600000 718380000 796220000 17456000 0 17456000 7474 316 7646 19774;19775;19776 30955;30956;30957;30958 30956 4 LATAQFK EENSFKRLMIVKKEKLATAQFKINKKHEDV LMIVKKEKLATAQFKINKKHEDVKQYKRTV K L A F K I 2 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 7 0 777.43849 A0A024R8Y0;Q9BZD4;E9PQC4 A0A024R8Y0 352 358 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 0.031504 67.035 1 1 0.90096 0.82351 6.6213 2 Median 0.76667 0.78584 NaN 1 0 Median 1.0588 0.86299 NaN 1 0 Median 22245000 11825000 10420000 17624000 9469500 8154600 4620800 2355000 2265800 7475 264 7647 19777;19778 30959;30960 30959 2 LATELYHQK DLIKEVLSMDDEIQKLATELYHQKSVLIMG DDEIQKLATELYHQKSVLIMGRGYHYATCL K L A Q K S 1 0 0 0 0 1 1 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 9 0 1101.5819 Q06210 Q06210 548 556 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.056712 36.395 1 1.6472 1.4561 NaN 1 Median NaN NaN NaN 0 0 Median 1.6472 1.4561 NaN 1 0 Median 885670 365750 519920 0 0 0 885670 365750 519920 7476 1688 7648 19779 30961 30961 1 LATLLGLQAPPTR RLLDMDGIIVEKQRRLATLLGLQAPPTRIG RRLATLLGLQAPPTRIGLINDMVRFNVLQY R L A T R I 2 1 0 0 0 1 0 1 0 0 4 0 0 0 2 0 2 0 0 0 0 0 13 0 1349.8031 Q05BS0;Q6P1R0;Q3B770;Q7Z5T5;Q24JU4;J9R021;Q14152 Q05BS0 355 367 EIF3A;eIF3a Eukaryotic translation initiation factor 3 subunit A yes no 2 0.0079804 54.198 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6357500 0 6357500 6357500 0 6357500 0 0 0 7477 1340 7649 19780;19781 30962;30963 30963 2 LATNAAVTVLR AGILDTYLGKYWAIKLATNAAVTVLRVDQI WAIKLATNAAVTVLRVDQIIMAKPAGGPKP K L A L R V 3 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 0 11 0 1127.6663 Q7Z759;Q53HU0;P50990;H7C2U0 Q7Z759 459 469 CCT8 T-complex protein 1 subunit theta yes no 2 0.0064035 54.471 1 3.1647 3.6031 NaN 1 Median 3.1647 3.6031 NaN 1 0 Median NaN NaN NaN 0 0 Median 49382000 10449000 38933000 49382000 10449000 38933000 0 0 0 7478 1592 7650 19782 30964 30964 1 LATNTSAPDLK PTSAKPSSTTPRLSRLATNTSAPDLKNVRS RLSRLATNTSAPDLKNVRSKVGSTENIKHQ R L A L K N 2 0 1 1 0 0 0 0 0 0 2 1 0 0 1 1 2 0 0 0 0 0 11 0 1129.5979 H0Y2V1;A0A024R2V0;F8W9U4;Q86Y04;E7EVA0;P27816;B4DSQ1;H7C4C5;Q8NDS5;B5MEG9 H0Y2V1 289 299 MAP4;DKFZp547H1810 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 2.8875E-05 101.46 2 2 1.1086 1.166 12.155 3 Plateau 1.1018 1.1358 7.3742 2 0 Median 1.1086 0.93911 NaN 1 0 Median 53148000 24292000 28857000 50957000 23591000 27366000 2191300 700700 1490600 7479 123 7651 19783;19784;19785;19786 30965;30966;30967;30968 30965 4 LATQLTGPVMPVR PSAPKKGDSSAEELKLATQLTGPVMPVRNV LKLATQLTGPVMPVRNVYKKEKARVITEEE K L A V R N 1 1 0 0 0 1 0 1 0 0 2 0 1 0 2 0 2 0 0 2 0 0 13 0 1381.7752 Q6NZ55;A8K4C8;P26373;O60250 Q6NZ55 146 158 RPL13 60S ribosomal protein L13 yes no 2 9.9148E-31 170.89 2 6 0.96782 0.82267 45.133 8 Median 1.2691 1.4977 2.2989 2 0 Median 0.91716 0.77017 29.204 6 0 Median 1867900000 837580000 1030300000 1646000000 699900000 946050000 221960000 137680000 84281000 7480 733 7652;7653 19787;19788;19789;19790;19791;19792;19793;19794 30969;30970;30971;30972;30973;30974;30975;30976;30977;30978;30979;30980;30981;30982;30983 30972 570 15 LATQSNEITIPVTFESR LSPEGTLTVEAPMPKLATQSNEITIPVTFE TQSNEITIPVTFESRAQLGGPEAAKSDETA K L A S R A 1 1 1 0 0 1 2 0 0 2 1 0 0 1 1 2 3 0 0 1 0 0 17 0 1904.9844 V9HW43;P04792;B4DL87;C9J3N8 V9HW43 172 188 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 1.994E-68 190.03 2 2 1.2545 1.2596 24.985 4 Median 1.3328 1.5667 1.2267 2 0 Median 1.1705 1.0166 0.68316 2 0 Median 1130000000 492480000 637480000 929860000 398860000 531000000 200100000 93622000 106480000 7481 1443 7654 19795;19796;19797;19798 30984;30985;30986;30987;30988;30989;30990 30986 7 LATVISVWNSDTQNPYHQQALAEK EDDPQEVSATVYLDKLATVISVWNSDTQNP SDTQNPYHQQALAEKVKEAERDVSLTSLAK K L A E K V 3 0 2 1 0 3 1 0 1 1 2 1 0 0 1 2 2 1 1 2 0 0 24 0 2712.3507 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678;I3L399 Q9HBB9 258 281 GEMIN4 Gem-associated protein 4 yes no 3 0.018177 27.203 1 1 0.8949 0.72528 NaN 1 Median NaN NaN NaN 0 0 Median 0.8949 0.72528 NaN 1 0 Median 9796300 1576600 8219700 7120300 0 7120300 2676000 1576600 1099400 7482 1940 7655 19799;19800 30991;30992 30991 2 LATVLSGACDGEVR GHRDGVNCLAKHPEKLATVLSGACDGEVRI KLATVLSGACDGEVRIWNLTQRNCIRTIQA K L A V R I 2 1 0 1 1 0 1 2 0 0 2 0 0 0 0 1 1 0 0 2 0 0 14 0 1446.7137 A0A087WT20;Q9NV06;B3KME9 A0A087WT20 231 244 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 7.6916E-10 122.51 2 2 1.1442 1.099 13.641 4 Median 0.89712 0.9526 12.7 2 0 Median 1.4033 1.1626 0.43397 2 0 Median 109250000 54672000 54582000 75899000 40600000 35299000 33354000 14072000 19283000 7483 402 7656 19801;19802;19803;19804 30993;30994;30995;30996;30997;30998;30999;31000;31001 30997 9 LATVVGENGSVLR QLSSRRLRSKDSVEKLATVVGENGSVLRRV EKLATVVGENGSVLRRVTRAAAAAAAATMA K L A L R R 1 1 1 0 0 0 1 2 0 0 2 0 0 0 0 1 1 0 0 3 0 0 13 0 1313.7303 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 110 122 INCENP Inner centromere protein yes no 2 7.2902E-09 117.86 2 2 1.34 1.3147 16.799 4 Median 1.0091 1.1492 0.98569 2 0 Median 1.7823 1.5334 3.7031 2 0 Median 257050000 116490000 140560000 197710000 94846000 102870000 59340000 21647000 37693000 7484 2059 7657 19805;19806;19807;19808 31002;31003;31004;31005;31006;31007;31008;31009;31010;31011;31012;31013;31014 31003 13 LATVVNDER EYLKSSDRLDEAAQRLATVVNDERFVSKAG DEAAQRLATVVNDERFVSKAGKSNYQLWHE R L A E R F 1 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1015.5298 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 51 59 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 0.0014132 85.731 3 0.99698 0.97932 NaN 1 Median 0.99698 0.97932 NaN 1 0 Median NaN NaN NaN 0 0 Median 13644000 6840300 6803600 13644000 6840300 6803600 0 0 0 7485 1838 7658 19809;19810;19811 31015;31016;31017 31017 3 LATYGITVAELTGDHQLCK MRSLVQEMVGSFGKRLATYGITVAELTGDH GITVAELTGDHQLCKEEISATQIIVCTPEK R L A C K E 2 0 0 1 1 1 1 2 1 1 3 1 0 0 0 0 3 0 1 1 0 0 19 0 2089.0514 O75643;A4FU77;Q5ZF01 O75643 559 577 SNRNP200;ASCC3L1 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.023505 12.663 1 1.0228 1.0414 NaN 1 Median 1.0228 1.0414 NaN 1 0 Median NaN NaN NaN 0 0 Median 30643000 13237000 17406000 30643000 13237000 17406000 0 0 0 7486 1411 7659 19812 31018 31018 1 LAVDEEENADNNTK LARQVDGDNSHVEMKLAVDEEENADNNTKA KLAVDEEENADNNTKANVTKPKRCSGSICY K L A T K A 2 0 3 2 0 0 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 14 0 1560.6904 A8K6Q8;P02786;F8WBE5 A8K6Q8 40 53 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 1.1302E-14 134.3 2 1 0.6839 0.70739 53.998 3 Median 0.80947 0.82829 22.314 2 0 Median 0.4036 0.33863 NaN 1 0 Median 17093000 10609000 6484400 15474000 9507900 5966400 1618700 1100700 517960 7487 761 7660 19813;19814;19815 31019;31020;31021;31022;31023 31021 5 LAVDTFPAR QCGVTSPSSAEATGKLAVDTFPARVIKHRA AEATGKLAVDTFPARVIKHRAAFLEAKGQG K L A A R V 2 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 9 0 988.53418 Q9HC52 Q9HC52 275 283 CBX8 Chromobox protein homolog 8 yes yes 2 0.0077672 74.255 2 1.6203 1.365 1.3909 2 Median NaN NaN NaN 0 0 Median 1.6203 1.365 1.3909 2 0 Median 6641200 2841400 3799800 0 0 0 6641200 2841400 3799800 7488 2052 7661 19816;19817 31024;31025;31026 31025 3 LAVEALSSLDGDLAGR LPPHCSRGERRAIEKLAVEALSSLDGDLAG AVEALSSLDGDLAGRYYALKSMTEAEQQQL K L A G R Y 3 1 0 2 0 0 1 2 0 0 4 0 0 0 0 2 0 0 0 1 0 0 16 0 1585.8312 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;G3V4N7 V9HWH2 157 172 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 1.3707E-08 97.463 2 1 2.7605 2.6773 36.451 2 Median 3.174 3.4645 NaN 1 0 Median 2.4008 2.069 NaN 1 0 Median 72362000 7792300 64570000 69703000 6879000 62824000 2659100 913260 1745800 7489 557 7662 19818;19819;19820 31027;31028;31029;31030;31031;31032 31027 6 LAVEILNK GEGRSKKEAKNAAAKLAVEILNKEKKAVSP AKNAAAKLAVEILNKEKKAVSPLLLTTTNS K L A N K E 1 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 898.54877 Q8IW76;B7ZKK7;P19525;Q05CP4;Q6PK38;F8WBH4;C9JZT2 Q8IW76 70 77 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.0074903 82.716 2 1.6421 1.688 2.8962 2 Median 1.6421 1.688 2.8962 2 0 Median NaN NaN NaN 0 0 Median 62017000 21230000 40787000 62017000 21230000 40787000 0 0 0 7490 1111 7663 19821;19822 31033;31034;31035;31036 31035 4 LAVHRNIRDDEGFIIR KHKDHFRLTIPRKSKLAVHRNIRDDEGFII AVHRNIRDDEGFIIRHFAGAVCYETTQFVE K L A I R H 1 3 1 2 0 0 1 1 1 3 1 0 0 1 0 0 0 0 0 1 0 0 16 2 1923.0439 A0A0A0MRM8;A0A0D9SGC1;E7EW20;Q9UM54 A0A0A0MRM8 565 580 MYO6 Unconventional myosin-VI yes no 6 0.050191 6.7282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4656800 4656800 0 4656800 4656800 0 0 0 0 7491 467 7664 19823 31037 31037 1 LAVLITNSNVR CRSLETSLVPLSDPKLAVLITNSNVRHSLA SDPKLAVLITNSNVRHSLASSEYPVRRRQC K L A V R H 1 1 2 0 0 0 0 0 0 1 2 0 0 0 0 1 1 0 0 2 0 0 11 0 1198.7034 Q71UH7;V9HWE7;P51570;C8CHJ6;Q6ZP37 Q71UH7 218 228 GALK1;HEL-S-19;GALK Galactokinase yes no 2 0.0035925 59.542 1 1.2746 1.2631 NaN 1 Median 1.2746 1.2631 NaN 1 0 Median NaN NaN NaN 0 0 Median 12136000 5386900 6749100 12136000 5386900 6749100 0 0 0 7492 1596 7665 19824 31038 31038 1 LAVLPYELR REVVTEIRDKATRRRLAVLPYELRFKEPLP KATRRRLAVLPYELRFKEPLPEYVRLVTEF R L A L R F 1 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 1 1 0 0 9 0 1072.6281 B2RAR2;Q9ULX3;H3BUR4 B2RAR2 46 54 NOB1 RNA-binding protein NOB1 yes no 2 0.0054512 66.692 2 2 1.2599 1.2167 44.826 4 Median 1.6866 1.77 2.8466 2 0 Median 0.92621 0.81674 6.208 2 0 Median 59759000 21808000 37951000 55438000 19604000 35835000 4320500 2204200 2116300 7493 874 7666 19825;19826;19827;19828 31039;31040;31041;31042;31043;31044 31039 6 LAVNMVPFPR TCLRFPGQLNADLRKLAVNMVPFPRLHFFM ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG K L A P R L 1 1 1 0 0 0 0 0 0 0 1 0 1 1 2 0 0 0 0 2 0 0 10 0 1142.627 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00;P04350;B4DE77;B4DJ43;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 Q5JP53 235 244 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB2A;TUBB2B;DKFZp566F223;TUBB1;TUBB8;TUBB4A;TUBB3;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 2.8491E-09 125.81 4 5 1.4073 1.3406 36.389 7 Median 1.591 1.8266 41.802 4 0 Median 1.4073 1.1693 10.942 3 0 Median 845350000 285590000 559770000 811180000 265340000 545840000 34166000 20245000 13921000 7494 1452;1660;1723;1441;2004;502;1778 7667;7668 19829;19830;19831;19832;19833;19834;19835;19836;19837 31045;31046;31047;31048;31049;31050;31051;31052;31053;31054;31055;31056;31057;31058;31059 31054 350 15 LAVSAQSEPAR LLVPEIDEVMRKVSKLAVSAQSEPARVQCR KVSKLAVSAQSEPARVQCRQVFLKYILDYP K L A A R V 3 1 0 0 0 1 1 0 0 0 1 0 0 0 1 2 0 0 0 1 0 0 11 0 1127.5935 O75691;B4DN27 O75691 2251 2261 UTP20 Small subunit processome component 20 homolog yes no 2 1.203E-40 189.38 2 2 1.556 1.5308 23.893 4 Median 1.3587 1.5308 17.833 2 0 Median 2.0829 1.7278 35.327 2 0 Median 239880000 95004000 144880000 220630000 88237000 132390000 19259000 6766600 12492000 7495 1412 7669 19838;19839;19840;19841 31060;31061;31062;31063;31064;31065 31061 6 LAVVCR YIDLTLSENKEEPVKLAVVCRDGQVHLFEH SENKEEPVKLAVVCRDGQVHLFEHILNGYC K L A C R D 1 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 6 0 716.40033 Q15061;C9IZK7 Q15061 287 292 WDR43 WD repeat-containing protein 43 yes no 2 0.051958 123.07 1 0.79655 0.85414 NaN 1 Median 0.79655 0.85414 NaN 1 0 Median NaN NaN NaN 0 0 Median 46214000 25988000 20226000 46214000 25988000 20226000 0 0 0 7496 1752 7670 19842 31066 31066 0 LAVYIDR TRLQEKEDLQELNDRLAVYIDRVRSLETEN DLQELNDRLAVYIDRVRSLETENAGLRLRI R L A D R V 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 848.4756 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;W5X314 P02545 42 48 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.026793 79.146 1 1.2194 1.4152 NaN 1 Median 1.2194 1.4152 NaN 1 0 Median NaN NaN NaN 0 0 Median 175200000 86673000 88524000 175200000 86673000 88524000 0 0 0 7497 1440 7671 19843 31067 31067 1 LAVYQAGASEGAER LPKRLLRDADDLKKRLAVYQAGASEGAERS RLAVYQAGASEGAERSLSAIRERFGPLVEQ R L A E R S 4 1 0 0 0 1 2 2 0 0 1 0 0 0 0 1 0 0 1 1 0 0 14 0 1420.6947 CON__Q03247 CON__Q03247 176 189 yes yes 2 0.0034421 57.019 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 7498 1167 7672 19844 31068 31068 1 LAWALALR DSQLWKLPGLQATVRLAWALALRGISQLPD GLQATVRLAWALALRGISQLPDVTALAEFT R L A L R G 3 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 912.55452 Q92621;B4DM61 Q92621 331 338 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.027969 53.554 2 1.2044 1.264 18.834 2 Median 1.2044 1.264 18.834 2 0 Median NaN NaN NaN 0 0 Median 8337800 3493700 4844100 8337800 3493700 4844100 0 0 0 7499 1950 7673 19845;19846 31069;31070 31069 2 LAWEQQEPGER SYNPPPEYLLSEEERLAWEQQEPGERKLSF EEERLAWEQQEPGERKLSFLPRKFPSLRAV R L A E R K 1 1 0 0 0 2 3 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 11 0 1341.6313 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 328 338 BOP1 Ribosome biogenesis protein BOP1 yes no 2 2.3712E-12 140.16 3 2 0.93887 0.90725 14.088 4 Median 0.71544 0.79592 2.8705 2 0 Median 1.2231 1.0142 0.1102 2 0 Median 140150000 75221000 64926000 106160000 60475000 45689000 33984000 14746000 19238000 7500 1726 7674 19847;19848;19849;19850;19851 31071;31072;31073;31074;31075;31076;31077;31078;31079;31080 31071 10 LAWGQPVGLR ERTDFKEEPEPGFKRLAWGQPVGLRHTGYV PGFKRLAWGQPVGLRHTGYVIELQHVVKGP R L A L R H 1 1 0 0 0 1 0 2 0 0 2 0 0 0 1 0 0 1 0 1 0 0 10 0 1095.6189 Q53HS0;P47897;A8K3A8;Q96AW5;B4DNN3;A0A1B0GVU9;H7C0R3;Q9H3A5;Q9BUZ3;B4DDN1;A0A0U1RRC8;A0A0U1RQX5;A0A0U1RQX9 Q53HS0 630 639 QARS Glutamine--tRNA ligase yes no 2 0.00012219 81.296 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5801700 5801700 0 5801700 5801700 0 0 0 0 7501 1575 7675 19852;19853 31081;31082 31082 2 LAYELYTEALGIDPNNIK KKEDGNKAFKEGNYKLAYELYTEALGIDPN ELYTEALGIDPNNIKTNAKLYCNRGTVNSK K L A I K T 2 0 2 1 0 0 2 1 0 2 3 1 0 0 1 0 1 0 2 0 0 0 18 0 2036.0466 B4DKK3;B7Z9W6;Q59EH7;Q99615;K7EPP7;K7ESP1;K7EJ24 B4DKK3 146 163 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 5.8534E-05 55.452 1 1.6187 1.694 NaN 1 Median 1.6187 1.694 NaN 1 0 Median NaN NaN NaN 0 0 Median 10453000 4353100 6100000 10453000 4353100 6100000 0 0 0 7502 990 7676 19854 31083 31083 1 LAYIAHPK VKPKIPKGVSRKLDRLAYIAHPKLGKRARA VSRKLDRLAYIAHPKLGKRARARIAKGLRL R L A P K L 2 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 8 0 911.52289 A0A024R326;Q6IPI1;P47914 A0A024R326 96 103 RPL29 60S ribosomal protein L29 yes no 2;3 0.0059854 88.734 4 2 0.70813 0.83702 29.554 5 Median 0.73291 0.87778 2.8613 3 0 Median 0.59072 0.50503 1.2314 2 0 Median 3020800000 1710200000 1310600000 2852500000 1603900000 1248600000 168230000 106210000 62017000 7503 127 7677 19855;19856;19857;19858;19859;19860 31084;31085;31086;31087;31088;31089;31090;31091;31092;31093 31087 10 LAYINPDLALEEK KKCQQAEKILKEQERLAYINPDLALEEKNK ERLAYINPDLALEEKNKGNECFQKGDYPQA R L A E K N 2 0 1 1 0 0 2 0 0 1 3 1 0 0 1 0 0 0 1 0 0 0 13 0 1487.7872 V9HW72;A8K690;P31948 V9HW72 352 364 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.0035417 49.466 2 2.1743 2.1796 9.7986 2 Median 2.1743 2.1796 9.7986 2 0 Median NaN NaN NaN 0 0 Median 26420000 8275700 18145000 26420000 8275700 18145000 0 0 0 7504 758 7678 19861;19862 31094;31095 31094 2 LAYLQILSEETSVK GTGSTKQEAKQLAAKLAYLQILSEETSVKS KLAYLQILSEETSVKSDYLSSGSFATTCES K L A V K S 1 0 0 0 0 1 2 0 0 1 3 1 0 0 0 2 1 0 1 1 0 0 14 0 1592.8661 Q8IW76;B7ZKK7;P19525;Q05CP4;Q6PK38 Q8IW76 160 173 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.00014486 77.64 1 1 1.192 1.0795 30.016 2 Median 1.2765 1.3348 NaN 1 0 Median 1.1132 0.87308 NaN 1 0 Median 12344000 5211200 7133300 10281000 4119600 6161100 2063800 1091600 972220 7505 1111 7679 19863;19864 31096;31097;31098;31099 31097 4 LAYQVLAEK KIVGRTKDVKEAVRKLAYQVLAEKVHMRAM KEAVRKLAYQVLAEKVHMRAMSIAQRVMLL K L A E K V 2 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 9 0 1033.5808 Q9BPX3;Q6NUR1 Q9BPX3 227 235 NCAPG Condensin complex subunit 3 yes no 2 1.073E-05 126.41 2 2 1.174 1.1122 15.777 4 Median 0.86375 0.97711 1.8294 2 0 Median 1.6055 1.2806 3.4494 2 0 Median 256840000 129070000 127770000 221660000 115810000 105850000 35181000 13262000 21920000 7506 1995 7680 19865;19866;19867;19868 31100;31101;31102;31103;31104;31105;31106;31107;31108;31109;31110;31111;31112;31113;31114;31115;31116 31102 17 LCAMVADNPSYNTK CDPRHKDCLLREFRKLCAMVADNPSYNTKT KLCAMVADNPSYNTKTQIIQDFLRKGSAGD K L C T K T 2 0 2 1 1 0 0 0 0 0 1 1 1 0 1 1 1 0 1 1 0 0 14 0 1582.712 P49916;K7ERZ5;K7ENR9;Q96DF0 P49916 269 282 LIG3 DNA ligase 3 yes no 2 0.0013346 59.198 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1247500 0 1247500 1247500 0 1247500 0 0 0 7507 1589 7681 19869;19870 31117;31118 31117 1370 2 LCAWLVSELR SQAVSAGASSPEFTKLCAWLVSELRVLCKL PEFTKLCAWLVSELRVLCKLEENVQATNSP K L C L R V 1 1 0 0 1 0 1 0 0 0 3 0 0 0 0 1 0 1 0 1 0 0 10 0 1245.654 I6L9E8;Q8NCA5;E9PH82;Q05CT2;C9J3G8 I6L9E8 45 54 FAM98A Protein FAM98A yes no 2 0.051194 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1071400 0 1071400 0 0 0 1071400 0 1071400 7508 1324 7682 19871 31119 31119 1 LCEIER LQREPFTIAQGKGQKLCEIERIHFFLSKKK TIAQGKGQKLCEIERIHFFLSKKKTDELRN K L C E R I 0 1 0 0 1 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 6 0 818.39564 B4DNW3;P35659;D6RDA2;D6R9L5 P35659 88 93 DEK Protein DEK no no 2 0.054059 72.355 1 0.85145 0.70636 NaN 1 Median NaN NaN NaN 0 0 Median 0.85145 0.70636 NaN 1 0 Median 20654000 11032000 9621400 0 0 0 20654000 11032000 9621400 7509 1546;1018 7683 19872 31120 31120 1 LCEQLSTVIPNSHVYYR ILITTSDRPHGRTVRLCEQLSTVIPNSHVY EQLSTVIPNSHVYYRRGLALKKIIPQCIAR R L C Y R R 0 1 1 0 1 1 1 0 1 1 2 0 0 0 1 2 1 0 2 2 0 0 17 0 2078.0255 Q9H9Y2 Q9H9Y2 159 175 RPF1 Ribosome production factor 1 yes yes 3 0.032111 18.471 1 1 1.0643 0.96577 18.068 2 Median 1.0919 1.0974 NaN 1 0 Median 1.0373 0.84995 NaN 1 0 Median 28780000 14092000 14689000 15950000 7565700 8384500 12830000 6525900 6304300 7510 2048 7684 19873;19874 31121;31122 31121 2 LCESLEELQNLNGK KLENEQEKLHVEYNKLCESLEELQNLNGKL KLCESLEELQNLNGKLRSEGQGIWALLGRI K L C G K L 0 0 2 0 1 1 3 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 14 0 1645.7981 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 661 674 PHF14 PHD finger protein 14 yes no 2 0.0088816 52.837 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2754600 0 2754600 0 0 0 2754600 0 2754600 7511 590 7685 19875;19876 31123;31124 31123 2 LCFEGLR KIIITVVEEQEQKGRLCFEGLRSLVPAAEL EEQEQKGRLCFEGLRSLVPAAELLESRVID R L C L R S 0 1 0 0 1 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 893.44292 Q15149;D3DWL0 Q15149 3109 3115 PLEC;PLEC1 Plectin yes no 2 0.046012 60.294 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12805000 0 12805000 12805000 0 12805000 0 0 0 7512 1754 7686 19877 31125 31125 1 LCFSTAQHAS YQMKNPNGPYPYTLKLCFSTAQHAS_____ PYTLKLCFSTAQHAS_______________ K L C A S - 2 0 0 0 1 1 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 0 10 0 1120.4971 B2R959;Q6NTA2;P14866;M0QXS5 B2R959 549 558 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 0.00013837 93.162 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48370000 0 0 48370000 0 0 0 0 0 7513 865 7687 19878 31126 31126 1 LCGPCSVQAVVLNDK FIFHANFLGKEVIARLCGPCSVQAVVLNDK LCGPCSVQAVVLNDKFQLPVFLDSHFVYSF R L C D K F 1 0 1 1 2 1 0 1 0 0 2 1 0 0 1 1 0 0 0 3 0 0 15 0 1658.812 Q99549;H0Y6J1 Q99549 798 812 MPHOSPH8 M-phase phosphoprotein 8 yes no 2 0.00064629 54.023 2 1.7374 1.4106 NaN 1 Median NaN NaN NaN 0 0 Median 1.7374 1.4106 NaN 1 0 Median 4140200 2577100 1563100 0 0 0 4140200 2577100 1563100 7514 1994 7688 19879;19880 31127;31128;31129 31129 3 LCLAYGGSDVSR SVCCVEDGVSHRNTRLCLAYGGSDVSRCFY NTRLCLAYGGSDVSRCFYWLMQRAGFPYRE R L C S R C 1 1 0 1 1 0 0 2 0 0 2 0 0 0 0 2 0 0 1 1 0 0 12 0 1296.6132 Q9H981 Q9H981 305 316 ACTR8 Actin-related protein 8 yes yes 2 0.041873 43.512 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7515 2044 7689 19881 31130 31130 1 LCLELLNVGVESK VRGILNKLTPEKFDKLCLELLNVGVESKLI DKLCLELLNVGVESKLILKGVILLIVDKAL K L C S K L 0 0 1 0 1 0 2 1 0 0 4 1 0 0 0 1 0 0 0 2 0 0 13 0 1472.7909 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77;H0YEN8;H0YDC0;H0YCF8;H0YE44 D3DQV9 96 108 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0072694 45.257 1 1.9565 1.6031 NaN 1 Median NaN NaN NaN 0 0 Median 1.9565 1.6031 NaN 1 0 Median 2467300 869270 1598100 0 0 0 2467300 869270 1598100 7516 1054 7690 19882 31131 31131 1 LCLHNLPK HQKLKDQNIFVSRTRLCLHNLPKAVDDKQL IFVSRTRLCLHNLPKAVDDKQLRKLLLSAT R L C P K A 0 0 1 0 1 0 0 0 1 0 3 1 0 0 1 0 0 0 0 0 0 0 8 0 993.54297 A0A024R753;Q9NW13 A0A024R753 489 496 RBM28 RNA-binding protein 28 yes no 2 0.019676 58.981 1 1.2576 1.005 NaN 1 Median NaN NaN NaN 0 0 Median 1.2576 1.005 NaN 1 0 Median 2910600 1137800 1772800 0 0 0 2910600 1137800 1772800 7517 214 7691 19883 31132;31133 31133 2 LCLNICVGESGDR QGEKENPMRELRIRKLCLNICVGESGDRLA RKLCLNICVGESGDRLARAAKVLEQLTGQT K L C D R L 0 1 1 1 2 0 1 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1491.681 Q08ES8;Q5VVD0;P62913;Q5VVC8;Q5VVC9 Q08ES8 19 31 RPL11 60S ribosomal protein L11 yes no 2 2.1987E-30 170.52 2 2 0.97436 0.95443 3.8975 4 Median 0.86687 0.97404 4.3513 2 0 Median 1.0931 0.93957 3.6953 2 0 Median 250030000 133730000 116300000 189560000 103440000 86118000 60470000 30291000 30179000 7518 1652 7692 19884;19885;19886;19887 31134;31135;31136;31137;31138;31139;31140;31141;31142 31138 9 LCLQHEDLAK MPSVIRAHAIITLGKLCLQHEDLAKKSIPA ITLGKLCLQHEDLAKKSIPALVRELEVCED K L C A K K 1 0 0 1 1 1 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1225.6125 P42695;G3V1A9 P42695 930 939 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.010114 63.216 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10566000 4284300 6281800 10566000 4284300 6281800 0 0 0 7519 1565 7693 19888;19889 31143;31144 31143 2 LCNIFSTK DEKKVTGGRNGYGAKLCNIFSTKFTVETAS RNGYGAKLCNIFSTKFTVETASREYKKMFK K L C T K F 0 0 1 0 1 0 0 0 0 1 1 1 0 1 0 1 1 0 0 0 0 0 8 0 981.49535 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 169 176 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.00021515 125.81 3 2 0.94125 0.94002 22.082 4 Median 0.66678 0.775 1.2969 2 0 Median 1.3114 1.1357 0.74347 2 0 Median 842840000 444810000 398030000 520380000 306270000 214110000 322460000 138540000 183920000 7520 1471;1679 7694 19890;19891;19892;19893;19894 31145;31146;31147;31148;31149;31150;31151;31152;31153;31154;31155;31156 31148 12 LCNLEEGSPGSGTYTR ______________________________ CNLEEGSPGSGTYTRHGYIFSSLAGCLMKS R L C T R H 0 1 1 0 1 0 2 3 0 0 2 0 0 0 1 2 2 0 1 0 0 0 16 0 1739.7785 R4GNH9;R4GMQ7;B1AMU7;B1AMU4;Q9Y3B2;B1AMU3 R4GNH9 14 29 EXOSC1 Exosome complex component CSL4 yes no 2 5.9705E-13 124.12 3 2 0.89621 0.8336 8.4038 4 Median 0.87193 0.88695 5.6766 2 0 Median 0.92987 0.78472 5.448 2 0 Median 68367000 34633000 33735000 52311000 25780000 26531000 16057000 8852800 7203900 7521 817 7695 19895;19896;19897;19898;19899 31157;31158;31159;31160;31161;31162;31163;31164;31165;31166;31167 31158 11 LCPVASCPDAR ASQLLTLDTTSIPLRLCPVASCPDARLLAG IPLRLCPVASCPDARLLAGCEGGCCCWDVR R L C A R L 2 1 0 1 2 0 0 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 11 0 1244.5642 A0A140VJD0;Q9UFC0;H7C5N7 A0A140VJD0 448 458 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.032634 37.556 1 1.1834 1.0383 NaN 1 Median NaN NaN NaN 0 0 Median 1.1834 1.0383 NaN 1 0 Median 1852600 863800 988780 0 0 0 1852600 863800 988780 7522 599 7696 19900 31168 31168 1 LCQIFSDLNATYR KVANASYYRKFFETKLCQIFSDLNATYRTI TKLCQIFSDLNATYRTIQGHLQSENFKQRV K L C Y R T 1 1 1 1 1 1 0 0 0 1 2 0 0 1 0 1 1 0 1 0 0 0 13 0 1599.7715 O15042;E7ET15 O15042 623 635 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.025943 44.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1195200 0 1195200 0 0 0 1195200 0 1195200 7523 1374 7697 19901 31169 31169 1 LCSDSCFSK GEVLHEVSNGSVVHRLCSDSCFSKFRANKG GSVVHRLCSDSCFSKFRANKGLKTNCCDQC R L C S K F 0 0 0 1 2 0 0 0 0 0 1 1 0 1 0 3 0 0 0 0 0 0 9 0 1102.4423 A6NHB5;Q14202;A6NHN7;A8K3Z7;A6NL54 A6NHB5 433 441 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.007781 61.679 2 0.61269 0.62305 10.083 2 Median 0.61269 0.62305 10.083 2 0 Median NaN NaN NaN 0 0 Median 19511000 11050000 8460800 19511000 11050000 8460800 0 0 0 7524 681 7698 19902;19903 31170;31171 31170 2 LCSGVLGTVVHGK SIDGRRGLFTGLTPRLCSGVLGTVVHGKVL PRLCSGVLGTVVHGKVLQHYQESDKGEELG R L C G K V 0 0 0 0 1 0 0 3 1 0 2 1 0 0 0 1 1 0 0 3 0 0 13 0 1325.7126 Q9Y6C9;E9PIE4 Q9Y6C9 78 90 MTCH2 Mitochondrial carrier homolog 2 yes no 3 0.0003768 46.481 2 1.2492 1.3105 6.2273 2 Median 1.2492 1.3105 6.2273 2 0 Median NaN NaN NaN 0 0 Median 73537000 29933000 43605000 73537000 29933000 43605000 0 0 0 7525 2152 7699 19904;19905 31172;31173 31173 2 LCSSAETLESHPDIGK VREECIPMKRRRRAKLCSSAETLESHPDIG CSSAETLESHPDIGKSTPQKTAEADPRRGV K L C G K S 1 0 0 1 1 0 2 1 1 1 2 1 0 0 1 3 1 0 0 0 0 0 16 0 1742.8145 O96028;Q05CW4 O96028 405 420 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 4.6641E-05 65.943 2 1.6368 1.3151 16.304 2 Median NaN NaN NaN 0 0 Median 1.6368 1.3151 16.304 2 0 Median 12940000 5888800 7051100 0 0 0 12940000 5888800 7051100 7526 1435 7700 19906;19907 31174;31175;31176 31176 3 LCYDAFTENMAGENQLLER SCITEGNELTKTLIKLCYDAFTENMAGENQ AFTENMAGENQLLERRRLYHCAAYNCAISV K L C E R R 2 1 2 1 1 1 3 1 0 0 3 0 1 1 0 0 1 0 1 0 0 0 19 0 2273.0093 P78527 P78527 1918 1936 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00010737 60.628 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7527 1665 7701 19908 31177 31177 1451 1 LCYNYPVIQNYYTSR GLLPEGIDDSVQLSRLCYNYPVIQNYYTSR LCYNYPVIQNYYTSRRQKFERLSRGKWNPD R L C S R R 0 1 2 0 1 1 0 0 0 1 1 0 0 0 1 1 1 0 4 1 0 0 15 0 1952.9091 Q8WYP5 Q8WYP5 692 706 AHCTF1 Protein ELYS yes yes 2 2.761E-11 111.63 2 2 3.0188 2.451 50.885 3 Median 1.0805 1.0638 NaN 1 0 Median 3.121 2.5599 6.1455 2 0 Median 35732000 11139000 24593000 14513000 6297100 8216300 21219000 4841500 16377000 7528 1945 7702 19909;19910;19911;19912 31178;31179;31180;31181;31182;31183;31184 31178 7 LCYVGYNIEQEQK NHSADFETVRMIKEKLCYVGYNIEQEQKLA EKLCYVGYNIEQEQKLALETTVLVESYTLP K L C Q K L 0 0 1 0 1 2 2 1 0 1 1 1 0 0 0 0 0 0 2 1 0 0 13 0 1642.7661 B4DHK9;P61160;B4DWQ5;Q8IY98;F5H6T1 B4DHK9 168 180 ACTR2 Actin-related protein 2 yes no 2 0.044319 40.727 1 1.8484 1.4415 NaN 1 Median NaN NaN NaN 0 0 Median 1.8484 1.4415 NaN 1 0 Median 2116200 703520 1412600 0 0 0 2116200 703520 1412600 7529 976 7703 19913 31185 31185 1 LDAAAPQSLEFLR VVQPALEMPEQKCSKLDAAAPQSLEFLRTP SKLDAAAPQSLEFLRTPFGGRLLVLESFLY K L D L R T 3 1 0 1 0 1 1 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 13 0 1429.7565 Q4VC44 Q4VC44 106 118 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes yes 2 2.3253E-13 128.01 2 2 1.2706 1.085 6.4405 3 Median 0.95416 0.97351 NaN 1 0 Median 1.2927 1.0883 0.42244 2 0 Median 48959000 30296000 18662000 32697000 22828000 9868800 16262000 7468600 8793600 7530 1781 7704 19914;19915;19916;19917 31186;31187;31188;31189;31190;31191;31192 31190 7 LDADLLVPASVK NRGGRKPKRKMKTQKLDADLLVPASVKVLR TQKLDADLLVPASVKVLRRSNRKKIDDPID K L D V K V 2 0 0 2 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 12 0 1239.7075 Q8WWQ0;Q9NWP3 Q8WWQ0 1725 1736 PHIP PH-interacting protein yes no 2 4.6886E-08 114.83 2 2 1.0705 1.0654 15.994 4 Median 0.80159 0.93573 1.1129 2 0 Median 1.4583 1.2318 3.2712 2 0 Median 674050000 355200000 318860000 561200000 310250000 250950000 112850000 44941000 67912000 7531 1942 7705 19918;19919;19920;19921 31193;31194;31195;31196;31197;31198;31199;31200;31201 31196 9 LDADPSLQR IREVTINQSLLAPLRLDADPSLQRVRQEES LLAPLRLDADPSLQRVRQEESEQIKTLNNK R L D Q R V 1 1 0 2 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 9 0 1013.5142 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 78 86 KRT7 Keratin, type II cytoskeletal 7 no no 2 7.17E-06 130.28 2 2 0.97853 1.0718 15.772 3 Median 0.95675 1.0957 3.1176 2 0 Median 0.98665 0.836 NaN 1 0 Median 316210000 153550000 162670000 301750000 148640000 153110000 14469000 4910000 9558600 + 7532 1171;1158 7706 19922;19923;19924;19925 31202;31203;31204;31205;31206;31207 31205 6 LDAEDVIGSR EGKGTKAFKQPAKRKLDAEDVIGSRRQPRA PAKRKLDAEDVIGSRRQPRAPKEKAQPLED K L D S R R 1 1 0 2 0 0 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1073.5353 P46013 P46013 2893 2902 MKI67 Antigen KI-67 yes yes 2 2.2744E-09 128.27 2 2 2.1225 2.0433 10.199 4 Median 1.6449 1.8682 1.198 2 0 Median 2.7376 2.2279 0.76343 2 0 Median 240780000 86482000 154290000 215480000 79898000 135580000 25300000 6584300 18716000 7533 1569 7707 19926;19927;19928;19929 31208;31209;31210;31211;31212;31213;31214;31215 31209 8 LDAEPRPPPTQEAA HKVNLQMVYDSPLCRLDAEPRPPPTQEAA_ RLDAEPRPPPTQEAA_______________ R L D A A - 3 1 0 1 0 1 2 0 0 0 1 0 0 0 4 0 1 0 0 0 0 0 14 1 1490.7365 Q6IBR2;K7ER00;Q9Y285 Q6IBR2 495 508 FARSLA;FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 0.00082864 76.143 2 0.61762 0.62971 28.577 2 Median 0.61762 0.62971 28.577 2 0 Median NaN NaN NaN 0 0 Median 25018000 13503000 11515000 25018000 13503000 11515000 0 0 0 7534 1347 7708 19930;19931 31216;31217 31216 1 LDAFVEGVVK GTLDVLVGLSDELAKLDAFVEGVVKKVAQY DELAKLDAFVEGVVKKVAQYMADVLEDSKD K L D V K K 1 0 0 1 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 3 0 0 10 0 1075.5914 A0A024R9I0;P21283 A0A024R9I0 61 70 ATP6V1C1 V-type proton ATPase subunit C 1 yes no 2 0.044784 45.368 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7535 279 7709 19932 31218 31218 1 LDALSNFHFIPKPPVPEIK EHVEIQKMMDSLFLKLDALSNFHFIPKPPV SNFHFIPKPPVPEIKVVSNLPAITMEEVAP K L D I K V 1 0 1 1 0 0 1 0 1 2 2 2 0 2 4 1 0 0 0 1 0 0 19 1 2161.1936 B3KPV5;O00566 B3KPV5 507 525 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3;4 2.3594E-06 80.238 4 4 1.1556 1.0662 16.224 8 Median 1.0249 1.1976 17.082 4 0 Median 1.1877 1.0123 3.8815 4 0 Median 208220000 90329000 117890000 114120000 51505000 62619000 94096000 38825000 55271000 7536 924 7710 19933;19934;19935;19936;19937;19938;19939;19940 31219;31220;31221;31222;31223;31224;31225;31226;31227;31228;31229;31230;31231;31232;31233;31234;31235 31230 17 LDDAIEDCTNAVK KLYCNRGTVNSKLRKLDDAIEDCTNAVKLD RKLDDAIEDCTNAVKLDDTYIKAYLRRAQC K L D V K L 2 0 1 3 1 0 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 13 0 1462.661 B4DKK3;B7Z9W6;Q59EH7;Q99615;A8K4T2;K7EJ24 B4DKK3 182 194 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.014525 37.065 2 2.0114 2.0421 8.3308 2 Median 2.0114 2.0421 8.3308 2 0 Median NaN NaN NaN 0 0 Median 25425000 7018400 18407000 25425000 7018400 18407000 0 0 0 7537 990 7711 19941;19942 31236;31237 31237 2 LDDDGLPFIGAK LVFGIKPGDPRVLQKLDDDGLPFIGAKLQY LQKLDDDGLPFIGAKLQYGDPYYSYLNLNT K L D A K L 1 0 0 3 0 0 0 2 0 1 2 1 0 1 1 0 0 0 0 0 0 0 12 0 1259.6398 Q9H6S8;Q6DKI9;Q9BSR4;B7Z1W6;Q9H9Y6;H7C0D9 Q9H6S8 166 177 POLR1B DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA2 yes no 2 0.035127 55.567 1 0.99695 1.0075 NaN 1 Median 0.99695 1.0075 NaN 1 0 Median NaN NaN NaN 0 0 Median 8582700 4526200 4056500 8582700 4526200 4056500 0 0 0 7538 1085 7712 19943 31238 31238 0 LDDDSDSPSFFEEKPEEPVVLALDPK RTYEQMEFPLLKKRKLDDDSDSPSFFEEKP EEKPEEPVVLALDPKGHEDDSYEARKSFLT K L D P K G 1 0 0 5 0 0 4 0 0 0 3 2 0 2 4 3 0 0 0 2 0 0 26 1 2917.3757 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 732 757 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 3.9369E-06 41.491 2 0.8586 1.0036 2.835 2 Median 0.8586 1.0036 2.835 2 0 Median NaN NaN NaN 0 0 Median 35767000 17907000 17860000 35767000 17907000 17860000 0 0 0 7539 878 7713 19944;19945 31239;31240 31239 2 LDDHALTGASDSR LDAHEDKVWGLHCSRLDDHALTGASDSRVI SRLDDHALTGASDSRVILWKDVTEAEQAEE R L D S R V 2 1 0 3 0 0 0 1 1 0 2 0 0 0 0 2 1 0 0 0 0 0 13 0 1356.627 Q12788;J3KNP2;A0JLS5 Q12788 616 628 TBL3 Transducin beta-like protein 3 yes no 2;3 6.5491E-49 192.95 4 4 1.0675 1.027 4.5025 8 Median 0.89745 1.0159 4.5883 4 0 Median 1.2342 1.0479 4.9952 4 0 Median 879140000 451460000 427680000 783480000 407650000 375840000 95657000 43816000 51841000 7540 1698 7714 19946;19947;19948;19949;19950;19951;19952;19953 31241;31242;31243;31244;31245;31246;31247;31248;31249;31250;31251;31252;31253;31254;31255;31256 31248 16 LDDIFEPVLIPEPK NGTVRCEMPELVQHKLDDIFEPVLIPEPKI KLDDIFEPVLIPEPKIRAVSPHFDDMHSNT K L D P K I 0 0 0 2 0 0 2 0 0 2 2 1 0 1 3 0 0 0 0 1 0 0 14 0 1623.876 Q14008;Q8IYN5;H0YCF6;H0YEK7 Q14008 1510 1523 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.00020917 83 2 1.0439 1.0594 6.8162 2 Median 1.0439 1.0594 6.8162 2 0 Median NaN NaN NaN 0 0 Median 19350000 9336100 10014000 19350000 9336100 10014000 0 0 0 7541 1725 7715 19954;19955 31257;31258;31259;31260 31260 4 LDDIHPFYADLMNILYDK NYHDRLSQILTDFPKLDDIHPFYADLMNIL IHPFYADLMNILYDKDHYKLALGQINIAKN K L D D K D 1 0 1 4 0 0 0 0 1 2 3 1 1 1 1 0 0 0 2 0 0 0 18 0 2195.0609 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;O60747;Q5T3R7 Q8N4P8 70 87 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 2.9113E-08 88.133 4 1 1.9891 2.0126 45.788 5 Median 2.0655 2.06 37.079 4 0 Median 1.078 0.87483 NaN 1 0 Median 147010000 61817000 85193000 120440000 48968000 71476000 26566000 12848000 13718000 7542 1183 7716;7717 19956;19957;19958;19959;19960 31261;31262;31263;31264;31265;31266;31267 31261 897 7 LDDLALLEDLEK DASDKEGMSPAKRTKLDDLALLEDLEKQRA RTKLDDLALLEDLEKQRALIKAELDNELME K L D E K Q 1 0 0 3 0 0 2 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 12 0 1385.729 B4DZQ5;A0A024QZY5;Q13523 B4DZQ5 86 97 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes no 2 9.2109E-05 90.685 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7543 33 7718 19961;19962;19963 31268;31269;31270 31270 3 LDDLFLK SAKALYEHLTAKNTKLDDLFLKRYASLLKY HLTAKNTKLDDLFLKRYASLLKYAGEPVPF K L D L K R 0 0 0 2 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 862.48002 E5KNY5;P42704 E5KNY5 1351 1357 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.010624 110.63 2 2.6888 2.9563 2.7005 2 Median 2.6888 2.9563 2.7005 2 0 Median NaN NaN NaN 0 0 Median 96732000 28356000 68377000 96732000 28356000 68377000 0 0 0 7544 1207 7719 19964;19965 31271;31272 31272 2 LDDLSVLDLSHNQLTECPR ANSLKNSGVPDDIFKLDDLSVLDLSHNQLT SVLDLSHNQLTECPRELENAKNMLVLNLSH K L D P R E 0 1 1 3 1 1 1 0 1 0 5 0 0 0 1 2 1 0 0 1 0 0 19 0 2224.0794 B4DIX0;Q13045;Q59H95;K7EP37;K7EP27;J3QQQ2;J3KS54 B4DIX0 72 90 FLII Protein flightless-1 homolog yes no 3 0.00015547 54.764 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3997000 0 3997000 3997000 0 3997000 0 0 0 7545 984 7720 19966 31273 31273 1 LDDLVSTGK VLENGVDIVVGTPGRLDDLVSTGKLNLSQV VGTPGRLDDLVSTGKLNLSQVRFLVLDEAD R L D G K L 0 0 0 2 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 946.49713 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 269 277 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.00095118 88.819 2 1.0342 1.1744 NaN 1 Median 1.0342 1.1744 NaN 1 0 Median NaN NaN NaN 0 0 Median 169930000 91770000 78164000 169930000 91770000 78164000 0 0 0 7546 452 7721 19967;19968 31274;31275 31274 2 LDDLYQQK ESKRSVRTLKEEVQKLDDLYQQKIKEAEEE LKEEVQKLDDLYQQKIKEAEEEDEKCASEL K L D Q K I 0 0 0 2 0 2 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 0 1021.508 A8K031;O14777;Q05DQ6 A8K031 510 517 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.0045728 89.55 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1646700 1646700 0 0 0 0 1646700 1646700 0 7547 696 7722 19969;19970 31276;31277 31276 2 LDDTYSFQVINK NIMSIFTFMGANVMRLDDTYSFQVINKTVK VMRLDDTYSFQVINKTVKMVIPALIQSDSG R L D N K T 0 0 1 2 0 1 0 0 0 1 1 1 0 1 0 1 1 0 1 1 0 0 12 0 1441.7089 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1337 1348 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 2.702E-29 208.75 2 2 1.1067 1.0377 10.264 4 Median 1.0157 1.1426 4.0634 2 0 Median 1.1916 0.96144 1.244 2 0 Median 272340000 125360000 146980000 227520000 105310000 122210000 44819000 20048000 24771000 7548 897 7723 19971;19972;19973;19974 31278;31279;31280;31281;31282;31283;31284;31285;31286 31279 9 LDEILK PKKTTDTASVQNEAKLDEILKEIKSIKDTI TASVQNEAKLDEILKEIKSIKDTICNQDER K L D L K E 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 6 0 729.42726 Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B4DMH3;B4E3S0;B7Z9V0;H0YHL7 Q53G58 441 446 CORO1C Coronin;Coronin-1C yes no 2 0.040144 89.703 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7549 340 7724 19975 31287 31287 1 LDELRGQDEGK NYRQLLERLQARQSRLDELRGQDEGKAQEL RQSRLDELRGQDEGKAQELEAKMKWTNLLY R L D G K A 0 1 0 2 0 1 2 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1258.6153 B3KNS8;O75683 B3KNS8 250 260 SURF6 Surfeit locus protein 6 yes no 2;3 2.5817E-07 115.57 3 1 0.72058 0.7987 5.7926 3 Median 0.69792 0.76761 5.6156 2 0 Median 0.95726 0.82578 NaN 1 0 Median 28463000 19381000 9081300 26425000 18448000 7976700 2038000 933370 1104600 7550 918 7725 19976;19977;19978;19979 31288;31289;31290;31291 31289 4 LDELYGTWR HVGRFCIWTESAFRKLDELYGTWRKAASLK ESAFRKLDELYGTWRKAASLKSNYNLPMHK K L D W R K 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 9 0 1151.5611 P36578;Q59GY2;B4DMJ6;H3BM89;Q53G74;B4DMJ2 P36578 260 268 RPL4 60S ribosomal protein L4 yes no 2 1.4255E-05 123.16 2 2 0.84084 0.84458 6.3635 4 Median 0.76849 0.87976 0.3792 2 0 Median 0.91821 0.7927 3.5722 2 0 Median 269650000 143580000 126070000 260980000 139350000 121640000 8671400 4234400 4437000 7551 1548 7726 19980;19981;19982;19983 31292;31293;31294;31295;31296;31297;31298 31294 7 LDETGNSLK VKGFRSYVDMYLKDKLDETGNSLKVIHEQV MYLKDKLDETGNSLKVIHEQVNHRWEVCLT K L D L K V 0 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 1 0 0 0 0 0 9 0 975.48729 P11388 P11388 279 287 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.3878E-05 114.89 1 0.75792 0.85078 NaN 1 Median 0.75792 0.85078 NaN 1 0 Median NaN NaN NaN 0 0 Median 67603000 37859000 29744000 67603000 37859000 29744000 0 0 0 7552 1471 7727 19984 31299 31299 1 LDETGVALK VNGFRSYVDLYVKDKLDETGVALKVIHELA LYVKDKLDETGVALKVIHELANERWDVCLT K L D L K V 1 0 0 1 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 944.51786 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 272 280 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.00022612 105.57 2 0.63007 0.70687 0.073559 2 Median 0.63007 0.70687 0.073559 2 0 Median NaN NaN NaN 0 0 Median 142040000 88016000 54024000 142040000 88016000 54024000 0 0 0 7553 1679 7728 19985;19986 31300;31301;31302;31303 31301 4 LDFHEAQQK QVTQHRTDPRLTKEKLDFHEAQQKKGKPHG RLTKEKLDFHEAQQKKGKPHGSRWDDEPHI K L D Q K K 1 0 0 1 0 2 1 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1114.5407 Q14966;D6W5H1;A8K583;A0A096LPH6;B4DF54;C9JWN0 Q14966 87 95 ZNF638 Zinc finger protein 638 yes no 2 0.0018185 80.455 1 1.0589 1.0931 NaN 1 Median 1.0589 1.0931 NaN 1 0 Median NaN NaN NaN 0 0 Median 18348000 8843500 9504800 18348000 8843500 9504800 0 0 0 7554 1746 7729 19987 31304 31304 1 LDFLEGDQK MMNAIKKYQKGFSDKLDFLEGDQKPLAQRK KGFSDKLDFLEGDQKPLAQRKKAGAKGQQM K L D Q K P 0 0 0 2 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1063.5186 Q6IB29;H7C2Q8;Q99848 Q6IB29 210 218 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 4.7173E-05 111.95 2 2 0.98069 0.94656 19.363 4 Median 0.95819 1.117 1.2816 2 0 Median 1.0007 0.79929 1.786 2 0 Median 562090000 286740000 275350000 527300000 268970000 258320000 34789000 17765000 17024000 7555 1316 7730 19988;19989;19990;19991 31305;31306;31307;31308;31309;31310;31311;31312;31313;31314;31315 31308 11 LDFLGEGQFATVYK ______________________________ KLDFLGEGQFATVYKARDKNTNQIVAIKKI K L D Y K A 1 0 0 1 0 1 1 2 0 0 2 1 0 2 0 0 1 0 1 1 0 0 14 0 1586.7981 D6RAD4;A0A0S2Z3F9;P50613;D6RFL0;D6RGG9;D6RI01;D6R9Z2;D6RF14;D6RIG9;A0A0D9SFW9 D6RAD4 15 28 CDK7 Cyclin-dependent kinase 7 yes no 2 0.0082904 53.237 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2982200 2982200 0 2982200 2982200 0 0 0 0 7556 547 7731 19992 31316 31316 1 LDFNLIR ILARNIPEDNADMARLDFNLIRVVACNLYP EDNADMARLDFNLIRVVACNLYPFVKTVAS R L D I R V 0 1 1 1 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 7 0 889.50215 V9HWH7;B2R7P8;P31939;B4DP06;C9JLK0 V9HWH7 91 97 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.031504 67.035 2 3.3645 3.3924 9.6474 2 Median 3.3645 3.3924 9.6474 2 0 Median NaN NaN NaN 0 0 Median 35118000 6659300 28459000 35118000 6659300 28459000 0 0 0 7557 852 7732 19993;19994 31317;31318;31319 31317 3 LDFNTDEEK FSKKDCEAYALQMTKLDFNTDEEKKMVEEV ALQMTKLDFNTDEEKKMVEEVFSNAIDCLS K L D E K K 0 0 1 2 0 0 2 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1109.4877 P42285;A8K6I4;B4E3M6 P42285 409 417 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 1.1812E-18 175.38 2 1 0.89117 0.95314 5.591 3 Median 0.86803 0.96148 1.2326 2 0 Median 1.0953 0.87377 NaN 1 0 Median 116820000 57063000 59754000 109940000 53583000 56362000 6871900 3480500 3391500 7558 1563 7733 19995;19996;19997 31320;31321;31322;31323;31324;31325 31321 6 LDFSTGNFNVLAVR VLTVGFGLARAENQKLDFSTGNFNVLAVRI KLDFSTGNFNVLAVRIAVLASICVTQAFMM K L D V R I 1 1 2 1 0 0 0 1 0 0 2 0 0 2 0 1 1 0 0 2 0 0 14 0 1551.8045 G3XAN4;Q6FHU7;Q6FHL3;A8K032;Q15629 G3XAN4 198 211 TRAM1 Translocating chain-associated membrane protein;Translocating chain-associated membrane protein 1 yes no 2 0.00010345 85.963 3 2 0.71803 0.71732 8.584 3 Plateau 0.71281 0.71732 NaN 1 0 Median 0.75739 0.64605 8.6239 2 0 Median 29552000 20571000 8981200 18298000 14436000 3862100 11254000 6134700 5119100 7559 697 7734 19998;19999;20000;20001;20002 31326;31327;31328;31329;31330;31331;31332 31331 7 LDFVCSFLQK TEEGQQILKQPVSERLDFVCSFLQKNRKHP PVSERLDFVCSFLQKNRKHPSSPECLVSAQ R L D Q K N 0 0 0 1 1 1 0 0 0 0 2 1 0 2 0 1 0 0 0 1 0 0 10 0 1255.6271 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;G1UI36;F5H2F3;F5H3L6;F5H0Z7;F5H763;Q86XH4;F5GZW1;F5H1L0;F8W6T3;F5GWK2;F5H073;F5H068;A8K394;Q4LE64;Q14980 Q4LE64 61 70 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 4.8926E-08 116.05 2 2 1.0358 0.95661 18.876 4 Median 0.77836 0.81444 1.8995 2 0 Median 1.3877 1.1278 2.4246 2 0 Median 70402000 34691000 35711000 49790000 27212000 22578000 20612000 7478800 13133000 7560 186;1747;718 7735 20003;20004;20005;20006 31333;31334;31335;31336;31337;31338 31338 6 LDGFPLLR DQFDAIDFSDNEVRKLDGFPLLRRLKTLLV SDNEVRKLDGFPLLRRLKTLLVNNNRICRI K L D L R R 0 1 0 1 0 0 0 1 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 929.53345 Q53G61;Q53G21;P09661;H0YKK0;Q6NVW9 Q53G61 57 64 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.041117 57.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7561 1461 7736 20007 31339 31339 1 LDGLLER FHLRTSYKKKTKSSKLDGLLERRIKQFTLE KKKTKSSKLDGLLERRIKQFTLEEKQRLEK K L D E R R 0 1 0 1 0 0 1 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 814.45487 E7ETD6;Q12830;F5GXF5 E7ETD6 1047 1053 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.028805 71.342 2 0.7103 0.75451 6.5148 2 Median 0.7103 0.75451 6.5148 2 0 Median NaN NaN NaN 0 0 Median 55965000 34425000 21540000 55965000 34425000 21540000 0 0 0 7562 1224 7737 20008;20009 31340;31341 31340 2 LDGLVETPTGYIESLPR QMMQNPQILAALQERLDGLVETPTGYIESL GLVETPTGYIESLPRVVKRRVNALKNLQVK R L D P R V 0 1 0 1 0 0 2 2 0 1 3 0 0 0 2 1 2 0 1 1 0 0 17 0 1858.9676 F8VY35;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8W020;F8W118;F8VXI6;F8VUX1;F8VV59;A0A024RBE6;F8W0J6;B7Z2V4;H0YHC3;B7Z9C2;F8VRJ2;B7Z5H0 F8VY35 56 72 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2 9.5196E-13 119.39 2 2 1.3698 1.3785 6.5216 4 Median 1.1261 1.2957 2.4257 2 0 Median 1.6644 1.4467 0.50315 2 0 Median 577830000 249610000 328220000 318200000 152550000 165650000 259630000 97055000 162570000 7563 332 7738 20010;20011;20012;20013 31342;31343;31344;31345;31346;31347;31348;31349;31350 31350 9 LDGNELDLSLSDLNEVPVK ______________________________ ELDLSLSDLNEVPVKELAALPKATILDLSC K L D V K E 0 0 2 3 0 0 2 1 0 0 5 1 0 0 1 2 0 0 0 2 0 0 19 0 2069.0528 Q96AG4;I3L223 Q96AG4 15 33 LRRC59 Leucine-rich repeat-containing protein 59 yes no 2 7.1984E-23 134.24 2 2 0.80743 0.77517 33.102 4 Median 0.91216 1.0325 2.8862 2 0 Median 0.69821 0.58276 2.6906 2 0 Median 324430000 181570000 142860000 230650000 125800000 104850000 93776000 55767000 38009000 7564 1958 7739 20014;20015;20016;20017 31351;31352;31353;31354;31355;31356;31357;31358 31354 8 LDGTEINGR IEFRSYSDMKRALDKLDGTEINGRNIRLIE KRALDKLDGTEINGRNIRLIEDKPRTSHRR K L D G R N 0 1 1 1 0 0 1 2 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 0 973.48287 V9HVZ0;A8K588;Q13247;Q59GY3 V9HVZ0 166 174 HEL-S-91;SRSF6 Serine/arginine-rich splicing factor 6 yes no 2 0.013268 56.729 1 1.4077 1.44 NaN 1 Median 1.4077 1.44 NaN 1 0 Median NaN NaN NaN 0 0 Median 34657000 15328000 19329000 34657000 15328000 19329000 0 0 0 7565 748 7740 20018 31359 31359 1 LDHTNFR LYHEQLALKTDCQERLDHTNFRFLLWRALT LKTDCQERLDHTNFRFLLWRALTKFPERVE R L D F R F 0 1 1 1 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 901.44061 O75691 O75691 815 821 UTP20 Small subunit processome component 20 homolog yes yes 2 0.026804 85.359 1 1.0038 1.0238 NaN 1 Median 1.0038 1.0238 NaN 1 0 Median NaN NaN NaN 0 0 Median 18717000 9223300 9493500 18717000 9223300 9493500 0 0 0 7566 1412 7741 20019 31360;31361 31361 2 LDHVVTIIK SSISDYAVKIVKANKLDHVVTIIKGKVEEV IVKANKLDHVVTIIKGKVEEVELPVEKVDI K L D I K G 0 0 0 1 0 0 0 0 1 2 1 1 0 0 0 0 1 0 0 2 0 0 9 0 1036.6281 E9PKG1;Q5U8W9;H7C2I1;Q99873;A0A087X1W2;E9PNR9;E9PQ98;E9PIX6;H0YDE4;B4DJ87 E9PKG1 89 97 PRMT1;HRMT1L2 Protein arginine N-methyltransferase 1 yes no 2 0.012639 64.654 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6386600 0 6386600 6386600 0 6386600 0 0 0 7567 1243 7742 20020;20021 31362;31363 31362 2 LDHYAIIK RQPKYPRKSAPRRNKLDHYAIIKFPLTTES SAPRRNKLDHYAIIKFPLTTESAMKKIEDN K L D I K F 1 0 0 1 0 0 0 0 1 2 1 1 0 0 0 0 0 0 1 0 0 0 8 0 971.54402 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;Q53RC5 H7BY10 73 80 RPL23A;DKFZp547I014 60S ribosomal protein L23a yes no 2 5.1421E-14 168.45 7 2 0.63379 0.67778 7.2582 7 Median 0.63238 0.66107 8.7945 5 0 Median 0.79412 0.6897 2.464 2 0 Median 5717600000 3487800000 2229800000 5347500000 3286200000 2061300000 370120000 201590000 168530000 7568 796 7743 20022;20023;20024;20025;20026;20027;20028;20029;20030 31364;31365;31366;31367;31368;31369;31370;31371;31372;31373;31374;31375;31376;31377;31378;31379;31380;31381;31382;31383;31384 31376 21 LDIAQLEENLK IEEISCASDQVEKYKLDIAQLEENLKEKND EKYKLDIAQLEENLKEKNDEILSLKQSLEE K L D L K E 1 0 1 1 0 1 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1284.6925 Q05DM0;Q6NSC0;Q6PG44;B4DZK6;O75330;Q6PIR6;Q05D84 Q05DM0 237 247 HMMR Hyaluronan mediated motility receptor yes no 2 0.0038555 59.067 1 0.70002 0.70653 NaN 1 Median 0.70002 0.70653 NaN 1 0 Median NaN NaN NaN 0 0 Median 5509400 3585600 1923800 5509400 3585600 1923800 0 0 0 7569 1057 7744 20031 31385;31386 31386 2 LDIDPSTITWQR DPSTLTEEEVSKFARLDIDPSTITWQRVLD FARLDIDPSTITWQRVLDTNDRFLRKITIG R L D Q R V 0 1 0 2 0 1 0 0 0 2 1 0 0 0 1 1 2 1 0 0 0 0 12 0 1443.7358 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 499 510 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.025337 36.684 1 1.1714 1.0462 NaN 1 Median NaN NaN NaN 0 0 Median 1.1714 1.0462 NaN 1 0 Median 816810 337350 479470 0 0 0 816810 337350 479470 7570 418 7745 20032 31387 31387 1 LDIDSPPITAR LHAAMADTFLEHMCRLDIDSPPITARNTGI HMCRLDIDSPPITARNTGIICTIGPASRSV R L D A R N 1 1 0 2 0 0 0 0 0 2 1 0 0 0 2 1 1 0 0 0 0 0 11 0 1196.6401 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 V9HWB8 33 43 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 6.9031E-08 114.4 1 1 3.3338 3.8028 NaN 1 Median 3.3338 3.8028 NaN 1 0 Median NaN NaN NaN 0 0 Median 146330000 36619000 109710000 140890000 36619000 104270000 5437100 0 5437100 7571 1481 7746 20033;20034 31388;31389 31388 2 LDIEDREIK GQYTCDCGTDKTSGKLDIEDREIKLVRPLH DKTSGKLDIEDREIKLVRPLHSVEVMETET K L D I K L 0 1 0 2 0 0 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 1 1129.5979 C0JYZ2;D3DPG0;A0A0A0MTS7;Q8WZ42;D3DPF9;A0A0A0MRA3 C0JYZ2 12100 12108 TTN Titin yes no 2 0.0050662 91.9 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25513000 25513000 0 25513000 25513000 0 0 0 0 7572 489 7747 20035 31390 31390 1 LDILDTAGQEEFGAMR DSYTKICSVDGIPARLDILDTAGQEEFGAM DILDTAGQEEFGAMREQYMRAGHGFLLVFA R L D M R E 2 1 0 2 0 1 2 2 0 1 2 0 1 1 0 0 1 0 0 0 0 0 16 0 1764.8352 A0A024QZF2;P10301;E9PK85;P62070 A0A024QZF2 79 94 RRAS;RRAS2 Ras-related protein R-Ras;Ras-related protein R-Ras2 yes no 2 7.5582E-05 73.848 2 2.6101 2.5897 NaN 1 Median 2.6101 2.5897 NaN 1 0 Median NaN NaN NaN 0 0 Median 16162000 3044500 13118000 16162000 3044500 13118000 0 0 0 7573 20 7748 20036;20037 31391;31392 31392 8 2 LDILELLEK QSAQTPIAVIGLTCRLDILELLEKRVKSRF IGLTCRLDILELLEKRVKSRFSHRQIHLMN R L D E K R 0 0 0 1 0 0 2 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 9 0 1084.638 A8K7H4;O43929;Q96B14;B7Z2M4;Q53TH5;CON__Q2YDI2 A8K7H4 196 204 ORC4;ORC4L Origin recognition complex subunit 4 yes no 2 0.00023342 105.52 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 7574 772 7749 20038;20039;20040;20041;20042 31393;31394;31395;31396;31397 31393 5 LDILGAAETGSGK PELEALTLAPAIRDKLDILGAAETGSGKTL DKLDILGAAETGSGKTLAFAIPMIHAVLQW K L D G K T 2 0 0 1 0 0 1 3 0 1 2 1 0 0 0 1 1 0 0 0 0 0 13 0 1230.6456 B4DKV2;G3V529;Q9GZR7;Q59FS7;B4DM03 B4DKV2 138 150 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.0003035 78.692 2 0.6842 0.70885 NaN 1 Median 0.6842 0.70885 NaN 1 0 Median NaN NaN NaN 0 0 Median 36392000 26387000 10005000 36392000 26387000 10005000 0 0 0 7575 993 7750 20043;20044 31398;31399;31400 31400 3 LDISDEFSEAIK AERVDRIILLFDAHKLDISDEFSEAIKAFR AHKLDISDEFSEAIKAFRGQDDKIRVVLNK K L D I K A 1 0 0 2 0 0 2 0 0 2 1 1 0 1 0 2 0 0 0 0 0 0 12 0 1365.6664 A8K9B9;A0A024R9N6;Q9H223 A8K9B9 197 208 EHD4 EH domain-containing protein 4 yes no 2 0.0029259 57.348 2 1.3061 1.3325 17.645 2 Median 1.3061 1.3325 17.645 2 0 Median NaN NaN NaN 0 0 Median 17979000 8776600 9202700 17979000 8776600 9202700 0 0 0 7576 284 7751 20045;20046 31401;31402 31401 2 LDISDEFSEVIK AERVDRIILLFDAHKLDISDEFSEVIKALK AHKLDISDEFSEVIKALKNHEDKIRVVLNK K L D I K A 0 0 0 2 0 0 2 0 0 2 1 1 0 1 0 2 0 0 0 1 0 0 12 0 1393.6977 B2R5U3;A0A024R571;Q9H4M9;C9JC03;B4DZH9;B4DMV9;B4DR44;B4DTR4;Q9NZN3;C9JDQ8;C9J2Z4 B2R5U3 194 205 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 yes no 2 0.0042184 64.374 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3364700 0 3364700 3364700 0 3364700 0 0 0 7577 172 7752 20047 31403 31403 1 LDLAGR VPIYEGYALPHAILRLDLAGRDLTDYLMKI YALPHAILRLDLAGRDLTDYLMKILTERGY R L D G R D 1 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 6 0 643.36532 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q13707;B4DUI8;Q562R1;K4EQ44;K4EP00;K4ENJ5;G8FSY7;Q562X7;Q562X4;Q562X2;Q562X1;Q562W9;Q562T6;Q562T5;Q562T4;Q562T3;Q562T0;Q562S2;Q562R6;Q562R4;Q562R0;Q562Q9;Q562Q8;Q562Q6;Q562Q5;Q562Q4;Q562Q3;Q562Q1;Q562Q0;Q562L3;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;B3KWQ3;Q6PJ43;B7ZAP6;Q6S8J3;A5A3E0;P0CG38;L0R5C4;P0CG39;Q562Z7;Q562X9;Q562S0;Q562R8;Q562P0;Q562N0;Q562L5;A0AUL6;Q9BYX7;Q562Z4;Q562V5;Q562U2;Q562N6;Q562Z6;Q562Y8;Q562N2;Q562M5;Q562M3;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;V9HVZ7;Q562L9 P63261 178 183 ACTA2;ACTG2;ACTA1;ACTC1;ACTBL2;ACTB;ACT;PS1TP5BP1;ACTG1;POTEE;POTEF;POTEI;POTEM;POTEJ;POTEKP;HEL-176 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 0.011167 136.19 2 1 1.8911 2.1883 5.3997 3 Median 1.8626 2.2175 1.872 2 0 Median 2.3219 2.0253 NaN 1 0 Median 5274300000 1723200000 3551100000 5237700000 1711500000 3526200000 36607000 11698000 24909000 7578 1624;1656;1100;2186;1796 7753 20048;20049;20050 31404;31405;31406 31404 3 LDLAGTLPGSK DEKDIKAFMGTPVQKLDLAGTLPGSKRQLQ PVQKLDLAGTLPGSKRQLQTPKEKAQALED K L D S K R 1 0 0 1 0 0 0 2 0 0 3 1 0 0 1 1 1 0 0 0 0 0 11 0 1070.5972 P46013 P46013 1198 1208 MKI67 Antigen KI-67 yes yes 2 9.0028E-05 97.565 2 2 2.3344 2.3316 17.73 4 Median 1.7108 2.0094 1.3838 2 0 Median 3.2 2.728 2.5612 2 0 Median 806890000 278870000 528020000 662260000 243530000 418730000 144630000 35341000 109290000 7579 1569 7754 20051;20052;20053;20054 31407;31408;31409;31410;31411;31412;31413;31414;31415;31416 31408 10 LDLDFPNLPYLLDGK APDYDRSQWLDVKFKLDLDFPNLPYLLDGK LDLDFPNLPYLLDGKNKITQSNAILRYIAR K L D G K N 0 0 1 3 0 0 0 1 0 0 5 1 0 1 2 0 0 0 1 0 0 0 15 0 1731.9083 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3 Q6FGJ9 57 71 GSTM3 Glutathione S-transferase Mu 3 yes no 2 0.011744 46.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7580 1503 7755 20055 31417 31417 1 LDLDLTADSQPPVFK VSGLMRKVPRVSLERLDLDLTADSQPPVFK LDLDLTADSQPPVFKVFPGSTTEDYNLIVI R L D F K V 1 0 0 3 0 1 0 0 0 0 3 1 0 1 2 1 1 0 0 1 0 0 15 0 1657.8563 B2R8R5;Q13263;M0R0K9 B2R8R5 493 507 TRIM28 Transcription intermediary factor 1-beta yes no 2 1.6472E-10 121.02 2 2 1.7291 1.9746 36.039 4 Linear 1.7061 1.9256 1.9607 2 0 Median 1.2858 1.0323 2.369 2 0 Median 167140000 60357000 106780000 149900000 53416000 96485000 17237000 6941300 10296000 7581 862 7756 20056;20057;20058;20059 31418;31419;31420;31421;31422;31423;31424;31425;31426 31421 9 LDLGEDYPSGK ______________________________ KRHRLDLGEDYPSGKKRAGTDGKDRDRDRD R L D G K K 0 0 0 2 0 0 1 2 0 0 2 1 0 0 1 1 0 0 1 0 0 0 11 0 1192.5612 O43143;B4E0S6 O43143 7 17 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.003118 60.398 2 2 1.4588 1.3656 7.8494 4 Median 1.27 1.4049 9.8674 2 0 Median 1.6689 1.3431 8.2027 2 0 Median 121850000 50597000 71255000 108450000 45358000 63092000 13401000 5238700 8162200 7582 1379 7757 20060;20061;20062;20063 31427;31428;31429;31430;31431;31432;31433;31434;31435;31436;31437;31438 31435 12 LDLLGNLPGSK EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ PVEKLDLLGNLPGSKRRPQTPKEKAKALED K L D S K R 0 0 1 1 0 0 0 2 0 0 4 1 0 0 1 1 0 0 0 0 0 0 11 0 1125.6394 P46013 P46013 1928 1938 MKI67 Antigen KI-67 yes no 2 0.00020829 92.445 4 2 2.4427 2.477 21.644 4 Median 1.7551 2.0845 1.0868 2 0 Median 3.4344 3.0226 4.8332 2 0 Median 2345700000 736450000 1609300000 1590300000 569800000 1020500000 755390000 166650000 588740000 7583 1569 7758 20064;20065;20066;20067;20068;20069 31439;31440;31441;31442;31443;31444;31445;31446;31447;31448;31449;31450;31451;31452;31453;31454;31455;31456;31457;31458;31459 31441 21 LDLPGNLPGSK DEKDMKAFMGTPVQKLDLPGNLPGSKRWPQ PVQKLDLPGNLPGSKRWPQTPKEKAQALED K L D S K R 0 0 1 1 0 0 0 2 0 0 3 1 0 0 2 1 0 0 0 0 0 0 11 0 1109.6081 P46013 P46013 2290 2300 MKI67 Antigen KI-67 yes yes 2 4.5693E-10 130.79 2 2 2.4461 2.4814 22.292 4 Median 1.7409 2.0563 0.94183 2 0 Median 3.5082 3.0229 2.2788 2 0 Median 1177400000 396050000 781390000 930750000 339880000 590870000 246690000 56173000 190520000 7584 1569 7759 20070;20071;20072;20073 31460;31461;31462;31463;31464;31465;31466;31467 31462 8 LDLQFQAIK QTAVRPGSPSTSTMRLDLQFQAIKIISIIV STSTMRLDLQFQAIKIISIIVKNDDSWLAS R L D I K I 1 0 0 1 0 2 0 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1074.6073 F2Z2U4;Q59FH1;H0Y4W2;Q9Y4A5 F2Z2U4 1617 1625 TRRAP Transformation/transcription domain-associated protein yes no 2 0.009605 67.032 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4492600 4492600 0 4492600 4492600 0 0 0 0 7585 1253 7760 20074 31468 31468 1 LDLQQGQNLLQGLSK CKENGGYTGCPFPAKLDLQQGQNLLQGLSK LDLQQGQNLLQGLSKLSPSTSGPHSHDYLP K L D S K L 0 0 1 1 0 4 0 2 0 0 5 1 0 0 0 1 0 0 0 0 0 0 15 0 1653.905 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 891 905 MOV10 Putative helicase MOV-10 yes no 2 3.5679E-22 146.07 2 2 1.3875 1.429 17.719 4 Linear 1.3875 1.4175 1.7656 2 0 Median 1.3358 1.067 11.486 2 0 Median 38724000 16429000 22295000 30046000 12335000 17712000 8677700 4094700 4583000 7586 1102 7761 20075;20076;20077;20078 31469;31470;31471;31472;31473;31474 31469 6 LDLSHCSHLTDQSSNLLTAVGSSTR ATLRLIIRHMPLLSRLDLSHCSHLTDQSSN DQSSNLLTAVGSSTRYSLTELNMAGCNKLT R L D T R Y 1 1 1 2 1 1 0 1 2 0 5 0 0 0 0 6 3 0 0 1 0 0 25 0 2698.2981 I3VM54;I3VM53;Q9Y2K7 I3VM54 1052 1076 KDM2A Lysine-specific demethylase 2A yes no 4 0.0050606 24.644 1 0.63168 0.52409 NaN 1 Median NaN NaN NaN 0 0 Median 0.63168 0.52409 NaN 1 0 Median 5454500 3264000 2190500 0 0 0 5454500 3264000 2190500 7587 1323 7762 20079 31475 31475 1 LDLSVR SSRKISNQFDWALMRLDLSVRRTGRIPKKL NQFDWALMRLDLSVRRTGRIPKKLLQKVFN R L D V R R 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 6 0 701.40719 E5KNY5;P42704;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 90 95 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.051608 95.957 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25069000 0 25069000 25069000 0 25069000 0 0 0 7588 1207 7763 20080;20081 31476;31477 31477 2 LDLSVTEAVVAGIAK GAEPLFFLDYFSCGKLDLSVTEAVVAGIAK LDLSVTEAVVAGIAKACGKAGCALLGGETA K L D A K A 3 0 0 1 0 0 1 1 0 1 2 1 0 0 0 1 1 0 0 3 0 0 15 0 1484.845 Q3B7A7;Q59HH3;P22102;B4DJ93;Q71VH3 Q3B7A7 543 557 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 2.6983E-07 107.18 2 2.8879 2.9521 NaN 1 Median 2.8879 2.9521 NaN 1 0 Median NaN NaN NaN 0 0 Median 27605000 4142600 23463000 27605000 4142600 23463000 0 0 0 7589 1507 7764 20082;20083 31478;31479 31479 2 LDLSVVENGGLK LLQGLKAIGSKDDGKLDLSVVENGGLKAKT DGKLDLSVVENGGLKAKTITKKRKKEIEES K L D L K A 0 0 1 1 0 0 1 2 0 0 3 1 0 0 0 1 0 0 0 2 0 0 12 0 1242.682 A8K245;Q99986;H0YJ50;H0YJJ9 A8K245 339 350 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0017153 60.434 1 1.8331 1.4508 NaN 1 Median NaN NaN NaN 0 0 Median 1.8331 1.4508 NaN 1 0 Median 6232200 2410900 3821400 0 0 0 6232200 2410900 3821400 7590 707 7765 20084 31480 31480 1 LDLTENLTGSK EEKDIIIFVGTPVQKLDLTENLTGSKRRPQ PVQKLDLTENLTGSKRRPQTPKEEAQALED K L D S K R 0 0 1 1 0 0 1 1 0 0 3 1 0 0 0 1 2 0 0 0 0 0 11 0 1189.619 P46013 P46013 1320 1330 MKI67 Antigen KI-67 yes no 2 3.8349E-16 135.86 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127780000 0 127780000 127780000 0 127780000 0 0 0 7591 1569 7766 20085 31481 31481 1 LDLVMVILFK MRRIDCLRQADKVWRLDLVMVILFKGIPLE DKVWRLDLVMVILFKGIPLESTDGERLVKA R L D F K G 0 0 0 1 0 0 0 0 0 1 3 1 1 1 0 0 0 0 0 2 0 0 10 0 1189.7145 Q6FI30;B7Z4T6;P08651;Q13051;A0A1B0GW37;U3KQE8;Q5VW28;A0A1B0GWJ4;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWI9;Q5VW27;Q5VW30;Q5VW26;O00712;B4DS74;U3KPY9;A0A087WXP2;Q5W0Y9;A0A0S2Z4H3;B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857;S4R3K4;S4R308;K7ESG9;K7EKH0;K7EJB0;Q7Z3K7;C9JWJ8;K7EN08;D2DXM9;B4DHW2;Q14938 Q6FI30 121 130 NFIC;NFI;NFIB;NFIA;NFIX;DKFZp686I05275 Nuclear factor 1;Nuclear factor 1 C-type;Nuclear factor 1 B-type;Nuclear factor 1 A-type;Nuclear factor 1 X-type no no 2 5.9198E-06 103.56 2 1.5746 1.6096 11.397 2 Median 1.5746 1.6096 11.397 2 0 Median NaN NaN NaN 0 0 Median 9478400 3799700 5678600 9478400 3799700 5678600 0 0 0 7592 1091;816;473 7767 20086;20087 31482;31483;31484;31485 31484 326 4 LDLVQSMMDCLYAK ILVDTNFINFSIKAKLDLVQSMMDCLYAKC KLDLVQSMMDCLYAKCIPCITDCVMAEIEK K L D A K C 1 0 0 2 1 1 0 0 0 0 3 1 2 0 0 1 0 0 1 1 0 0 14 0 1685.7827 G3V5S9;G3V1S4;Q4FZ45;Q9Y324 G3V5S9 69 82 FCF1;DKFZp686O2396 rRNA-processing protein FCF1 homolog yes no 2 0.030828 42.001 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7593 1272 7768 20088 31486 31486 975;976 1 LDNASAFQGAVISPHYDSLLVK GRIEVFRSGEGMGIRLDNASAFQGAVISPH QGAVISPHYDSLLVKVIAHGKDHPTAATKM R L D V K V 3 0 1 2 0 1 0 1 1 1 3 1 0 1 1 3 0 0 1 2 0 0 22 0 2344.2063 A0A024R5C5;P11498;E9PRE7 A0A024R5C5 407 428 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 3 1.8701E-07 52.909 1 2.0104 2.0234 NaN 1 Median 2.0104 2.0234 NaN 1 0 Median NaN NaN NaN 0 0 Median 13504000 4481000 9023000 13504000 4481000 9023000 0 0 0 7594 176 7769 20089 31487;31488 31487 2 LDNLLLDTEGFVK LQYLHEHKIVYRDLKLDNLLLDTEGFVKIA LKLDNLLLDTEGFVKIADFGLCKEGMGYGD K L D V K I 0 0 1 2 0 0 1 1 0 0 4 1 0 1 0 0 1 0 0 1 0 0 13 0 1475.7872 Q16513 Q16513 785 797 PKN2 Serine/threonine-protein kinase N2 yes yes 2 0.00013735 90.653 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9071200 8277100 794050 8277100 8277100 0 794050 0 794050 7595 1769 7770 20090;20091;20092 31489;31490;31491 31489 3 LDNTLGGTSEVIHR KKLSRLSAEEQAKFRLDNTLGGTSEVIHRK RLDNTLGGTSEVIHRKALQRIYADKAADII R L D H R K 0 1 1 1 0 0 1 2 1 1 2 0 0 0 0 1 2 0 0 1 0 0 14 0 1510.774 Q96ST3 Q96ST3 653 666 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 3.0456E-05 85.42 2 0.73853 0.77779 2.3174 2 Median 0.73853 0.77779 2.3174 2 0 Median NaN NaN NaN 0 0 Median 46302000 24908000 21394000 46302000 24908000 21394000 0 0 0 7596 1990 7771 20093;20094 31492;31493 31493 2 LDPAASVTGSK EDKSINAFRETAKQKLDPAASVTGSKRHPK AKQKLDPAASVTGSKRHPKTKEKAQPLEDL K L D S K R 2 0 0 1 0 0 0 1 0 0 1 1 0 0 1 2 1 0 0 1 0 0 11 0 1044.5451 P46013 P46013 1442 1452 MKI67 Antigen KI-67 yes no 2 0.00040914 80.758 2 2 2.4854 2.5246 19.94 4 Median 1.7753 2.104 4.0557 2 0 Median 3.4474 2.9644 0.99187 2 0 Median 1819300000 631590000 1187700000 1598200000 581550000 1016700000 221060000 50043000 171020000 7597 1569 7772 20095;20096;20097;20098 31494;31495;31496;31497;31498;31499;31500 31497 7 LDPGLALGPGER CGAPLSLVDLAGSERLDPGLALGPGERERL SERLDPGLALGPGERERLRETQAINSSLST R L D E R E 1 1 0 1 0 0 1 3 0 0 3 0 0 0 2 0 0 0 0 0 0 0 12 0 1193.6404 A0A024RCS7;Q9BW19;B4DMA8;B4E063;A0A087X1W5 A0A024RCS7 572 583 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.00020961 80.706 1 0.88621 0.91581 NaN 1 Median 0.88621 0.91581 NaN 1 0 Median NaN NaN NaN 0 0 Median 23663000 14347000 9316000 23663000 14347000 9316000 0 0 0 7598 371 7773 20099 31501;31502 31501 2 LDPGSEETQTLVR SPDWQVDYESYTWRKLDPGSEETQTLVREY RKLDPGSEETQTLVREYFSWEGAFQHVGKA K L D V R E 0 1 0 1 0 1 2 1 0 0 2 0 0 0 1 1 2 0 0 1 0 0 13 0 1443.7205 Q53YD7;P26641;B4DUP0 Q53YD7 402 414 EEF1G Elongation factor 1-gamma yes no 2 0.0025346 69.01 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44394000 0 44394000 44394000 0 44394000 0 0 0 7599 1522 7774 20100 31503 31503 1 LDPHLVLDQLR FVRCIIPNHEKKAGKLDPHLVLDQLRCNGV KAGKLDPHLVLDQLRCNGVLEGIRICRQGF K L D L R C 0 1 0 2 0 1 0 0 1 0 4 0 0 0 1 0 0 0 0 1 0 0 11 0 1317.7405 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;P35580 A0A024R1N1 683 693 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.000219 88.681 4 3 1.644 1.9176 16.349 7 Median 1.5375 1.7205 11.88 4 0 Median 2.6651 2.2387 3.7064 3 0 Plateau 484190000 181130000 303060000 426100000 165140000 260960000 58091000 15998000 42093000 7600 81;1544 7775 20101;20102;20103;20104;20105;20106;20107 31504;31505;31506;31507;31508;31509;31510;31511;31512;31513;31514;31515;31516;31517 31504 14 LDPHPELLPELGSLPPVNT HSAEAIALEQSRLARLDPHPELLPELGSLP PELLPELGSLPPVNT_______________ R L D N T - 0 0 1 1 0 0 2 1 1 0 5 0 0 0 5 1 1 0 0 1 0 0 19 0 2037.0783 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 Q59FM7 1013 1031 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.032941 31.639 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7828400 0 0 7828400 0 0 0 0 0 7601 364 7776 20108 31518 31518 1 LDPSIFESLQK VIIGLKTAKGTKQLKLDPSIFESLQKERVE KQLKLDPSIFESLQKERVEAGDVIYIEANS K L D Q K E 0 0 0 1 0 1 1 0 0 1 2 1 0 1 1 2 0 0 0 0 0 0 11 0 1275.6711 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 172 182 RUVBL1 RuvB-like 1 yes no 2 2.8462E-12 138.08 2 2 0.91735 0.87172 10.519 4 Median 0.70311 0.79 7.7647 2 0 Median 1.1641 0.92921 2.8735 2 0 Median 176450000 97421000 79031000 139690000 80833000 58856000 36763000 16588000 20175000 7602 1076 7777 20109;20110;20111;20112 31519;31520;31521;31522;31523;31524;31525;31526;31527 31519 9 LDPSPQTIYK FPLLKLEKELLKQIKLDPSPQTIYKWIKDN LKQIKLDPSPQTIYKWIKDNISPKLHVDKG K L D Y K W 0 0 0 1 0 1 0 0 0 1 1 1 0 0 2 1 1 0 1 0 0 0 10 0 1160.6077 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89;Q3LIE0 D3DQV9 743 752 EIF4G2;AAG1;Nbla00315 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0035438 64.04 2 2.0837 2.1348 0.69777 2 Median 2.0837 2.1348 0.69777 2 0 Median NaN NaN NaN 0 0 Median 45068000 15074000 29994000 45068000 15074000 29994000 0 0 0 7603 1054 7778 20113;20114 31528;31529;31530 31528 3 LDPVEQGQEDTVAPEVAAEK SRTAVDGFQSESPEKLDPVEQGQEDTVAPE QGQEDTVAPEVAAEKPVGALLGPGAERARM K L D E K P 3 0 0 2 0 2 4 1 0 0 1 1 0 0 2 0 1 0 0 3 0 0 20 0 2124.0223 Q9Y232 Q9Y232 220 239 CDYL Chromodomain Y-like protein yes yes 2 3.2696E-07 84.508 2 1.1231 1.1207 5.0266 2 Median 1.1231 1.1207 5.0266 2 0 Median NaN NaN NaN 0 0 Median 53615000 25443000 28172000 53615000 25443000 28172000 0 0 0 7604 2121 7779 20115;20116 31531;31532;31533;31534 31531 4 LDQDLNEVK DTEANKEKNLEQYNKLDQDLNEVKARVEEL LEQYNKLDQDLNEVKARVEELDRKYYEVKN K L D V K A 0 0 1 2 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1072.5401 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 437 445 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0031929 74.464 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7605 803 7780 20117 31535 31535 1 LDQLIYIPLPDEK NRPDIIDPAILRPGRLDQLIYIPLPDEKSR GRLDQLIYIPLPDEKSRVAILKANLRKSPV R L D E K S 0 0 0 2 0 1 1 0 0 2 3 1 0 0 2 0 0 0 1 0 0 0 13 0 1555.8498 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4 V9HW80 639 651 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 2 6.604E-05 95.401 2 2 0.98406 0.76416 34.573 3 Median 1.3047 1.3885 NaN 1 0 Median 0.95784 0.76293 0.22786 2 0 Median 36529000 20076000 16453000 28219000 15939000 12280000 8310200 4136800 4173400 7606 1613 7781 20118;20119;20120;20121 31536;31537;31538;31539;31540;31541;31542 31538 7 LDQLSEIIER YTEAAHRAVLFPQQRLDQLSEIIERFIFVM FPQQRLDQLSEIIERFIFVMPPVEAPPPSL R L D E R F 0 1 0 1 0 1 2 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1214.6507 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4 A0A0A0MS59 1707 1716 SRCAP Helicase SRCAP yes no 2 0.0090894 58.699 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7607 476 7782 20122 31543 31543 1 LDQPGNLPGSNR EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ VQKLDQPGNLPGSNRRLQTRKEKAQALEEL K L D N R R 0 1 2 1 0 1 0 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 12 0 1266.6317 P46013 P46013 1806 1817 MKI67 Antigen KI-67 yes yes 2 1.9874E-08 141.88 2 2 2.2866 2.3069 23.289 4 Median 1.6243 1.9056 1.668 2 0 Median 3.2827 2.8449 4.2861 2 0 Median 808970000 298740000 510230000 692380000 270640000 421740000 116590000 28095000 88491000 7608 1569 7783 20123;20124;20125;20126 31544;31545;31546;31547;31548;31549;31550 31544 7 LDQPGNLPGSNRR EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ QKLDQPGNLPGSNRRLQTRKEKAQALEELT K L D R R L 0 2 2 1 0 1 0 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 13 1 1422.7328 P46013 P46013 1806 1818 MKI67 Antigen KI-67 yes yes 2;3 1.2233E-14 111.79 4 3 2.0667 2.2495 19.194 7 Median 1.8525 2.1974 5.5718 4 0 Median 3.6257 3.0218 3.3655 3 0 Median 800720000 266840000 533880000 650140000 234310000 415830000 150580000 32538000 118040000 7609 1569 7784 20127;20128;20129;20130;20131;20132;20133 31551;31552;31553;31554;31555;31556;31557;31558;31559;31560;31561;31562;31563 31553 13 LDQQTLPLGGR VPKSEAEQKLPLGTRLDQQTLPLGGRELSQ LGTRLDQQTLPLGGRELSQGLLPLPQPYQA R L D G R E 0 1 0 1 0 2 0 2 0 0 3 0 0 0 1 0 1 0 0 0 0 0 11 0 1196.6513 A0A0S2Z4W4;Q7Z3D7;A0A0A0MR66;P98175;Q6PKH5;A0A0S2Z4X1 A0A0S2Z4W4 253 263 DKFZp686E2459;RBM10 RNA-binding protein 10 yes no 2 0.0031487 60.342 2 1.4985 1.5016 7.2736 2 Median 1.4985 1.5016 7.2736 2 0 Median NaN NaN NaN 0 0 Median 18186000 7347900 10838000 18186000 7347900 10838000 0 0 0 7610 464 7785 20134;20135 31564;31565 31565 2 LDSIVIQQGR TVEERIVERAEMKLRLDSIVIQQGRLVDQN EMKLRLDSIVIQQGRLVDQNLNKIGKDEML R L D G R L 0 1 0 1 0 2 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1127.6299 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;D7EZH4 O60264 627 636 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 1.4673E-05 101.72 2 2 3.4756 3.3615 25.62 4 Median 2.4283 2.737 0.97525 2 0 Median 5.0987 4.2525 5.1598 2 0 Median 200190000 55375000 144820000 182320000 52455000 129860000 17872000 2919600 14952000 7611 1391 7786 20136;20137;20138;20139 31566;31567;31568;31569;31570;31571;31572 31567 7 LDSPAGTALSPSGHTK VSPAAIKKTILDKVKLDSPAGTALSPSGHT DSPAGTALSPSGHTKLLPRSLAPAGKD___ K L D T K L 2 0 0 1 0 0 0 2 1 0 2 1 0 0 2 3 2 0 0 0 0 0 16 0 1537.7736 Q2TU78;E7D7X9;A0A024R8U9;P32322;Q8TBX0;E2QRB3;E7D7Y0;A0A1B2JLU7 Q2TU78 172 187 PIG45;PYCR1 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 2 0.019236 43.382 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7612 259 7787 20140 31573 31573 1 LDSSAQFGYYFR SAARDLGLDPGKQIKLDSSAQFGYYFRVTC QIKLDSSAQFGYYFRVTCKEEKVLRNNKNF K L D F R V 1 1 0 1 0 1 0 1 0 0 1 0 0 2 0 2 0 0 2 0 0 0 12 0 1452.6674 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;V9H068;B4DL39;B4DSB9;B4DN49 V9H019 513 524 MSH2 DNA mismatch repair protein Msh2 yes no 2 2.2765E-06 111.65 2 1 0.87314 0.88792 5.6581 2 Median 0.87314 0.88792 5.6581 2 0 Median NaN NaN NaN 0 0 Median 40853000 19289000 21564000 40853000 19289000 21564000 0 0 0 7613 1237 7788 20141;20142;20143 31574;31575;31576;31577;31578 31577 5 LDSVLLLSSMNLPGGELR TEVQQKRWKVETNSRLDSVLLLSSMNLPGG VLLLSSMNLPGGELRRRSAEDELAMRGFLQ R L D L R R 0 1 1 1 0 0 1 2 0 0 6 0 1 0 1 3 0 0 0 1 0 0 18 0 1913.0292 Q13868;A3KFL5;A3KFL2;B4E001;A3KFL1 Q13868 104 121 EXOSC2 Exosome complex component RRP4 yes no 2 0.001205 48.532 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1323500 0 1323500 0 0 0 1323500 0 1323500 7614 1722 7789 20144 31579 31579 1557 1 LDSVPVEEQEEFK QLNAAHQEALMKLERLDSVPVEEQEEFKQL ERLDSVPVEEQEEFKQLSDGIQELQQSLNQ R L D F K Q 0 0 0 1 0 1 4 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 13 0 1547.7355 A0A024R8Y0;Q9BZD4;E9PQC4;B1AQT4;E9PP32 A0A024R8Y0 169 181 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 0.0017989 56.359 1 0.72851 0.59346 NaN 1 Median NaN NaN NaN 0 0 Median 0.72851 0.59346 NaN 1 0 Median 6732300 3264400 3467800 0 0 0 6732300 3264400 3467800 7615 264 7790 20145 31580 31580 1 LDTDDLDEIEK ILNRIQEHFNKKIERLDTDDLDEIEKIAN_ KIERLDTDDLDEIEKIAN____________ R L D E K I 0 0 0 4 0 0 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1304.5984 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;Q59FQ9;Q68DY7;B4DL69;Q69YM2;A0A024QZ90;I3L352;B4DS24;Q9HBZ9;Q7Z4W5 I3L0H8 434 444 DDX19A;DDX19B;DKFZp686C21137;hCG_1998531;DKFZp762C1313 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 4.7232E-05 99.568 2 1 2.2825 1.8933 NaN 1 Median NaN NaN NaN 0 0 Median 2.2825 1.8933 NaN 1 0 Median 14909000 588870 14320000 13116000 0 13116000 1793000 588870 1204100 7616 593 7791 20146;20147;20148 31581;31582;31583 31581 2 LDTSQWPLLLK HAEEFLIKPESKVAKLDTSQWPLLLKNFDK KVAKLDTSQWPLLLKNFDKLNVRTTHYTPL K L D L K N 0 0 0 1 0 1 0 0 0 0 4 1 0 0 1 1 1 1 0 0 0 0 11 0 1312.7391 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 47 57 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 1.719E-16 149.72 1 2 0.70442 0.5593 6.7065 2 Median NaN NaN NaN 0 0 Median 0.70442 0.5593 6.7065 2 0 Median 96234000 83357000 12877000 63636000 63636000 0 32598000 19720000 12877000 7617 1398 7792 20149;20150;20151 31584;31585;31586;31587;31588 31584 5 LDVGNFSWGSECCTR TVRVRGGNKKYRALRLDVGNFSWGSECCTR LDVGNFSWGSECCTRKTRIIDVVYNASNNE R L D T R K 0 1 1 1 2 0 1 2 0 0 1 0 0 1 0 2 1 1 0 1 0 0 15 0 1786.7403 Q5JR94;P62241 Q5JR94 60 74 RPS8 40S ribosomal protein S8 yes no 2 3.8272E-07 104.87 3 2 0.70666 0.71252 8.1956 4 Median 0.57143 0.66828 0.45554 2 0 Median 0.88433 0.76888 2.1574 2 0 Median 799430000 483700000 315740000 527020000 341940000 185080000 272410000 141760000 130650000 7618 1635 7793 20152;20153;20154;20155;20156 31589;31590;31591;31592;31593;31594;31595;31596;31597;31598;31599;31600;31601;31602 31591 14 LDVPEDLR NPNKPATKDTFHKIKLDVPEDLRQMCAKEA DTFHKIKLDVPEDLRQMCAKEAAHKDFKKA K L D L R Q 0 1 0 2 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 955.49746 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29 X5DQX7 131 138 FMR1 Fragile X mental retardation protein 1 yes no 2 0.012683 73.248 3 1.2018 1.2295 NaN 1 Median 1.2018 1.2295 NaN 1 0 Median NaN NaN NaN 0 0 Median 49239000 29801000 19438000 49239000 29801000 19438000 0 0 0 7619 1689 7794 20157;20158;20159 31603;31604;31605 31604 3 LDVQFSGLTK PTHFTVNAKAAGKGKLDVQFSGLTKGDAVR AGKGKLDVQFSGLTKGDAVRDVDIIDHHDN K L D T K G 0 0 0 1 0 1 0 1 0 0 2 1 0 1 0 1 1 0 0 1 0 0 10 0 1106.5972 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 907 916 FLNA Filamin-A yes no 2 1.7214E-08 122.44 2 1.3805 1.5506 9.8305 2 Median 1.3805 1.5506 9.8305 2 0 Median NaN NaN NaN 0 0 Median 186360000 83058000 103300000 186360000 83058000 103300000 0 0 0 7620 1504 7795 20160;20161 31606;31607;31608;31609 31607 4 LDVSLPFVSR QELILFADLLCQYHRLDVSLPFVSRGPLTV CQYHRLDVSLPFVSRGPLTVEETPRVQGET R L D S R G 0 1 0 1 0 0 0 0 0 0 2 0 0 1 1 2 0 0 0 2 0 0 10 0 1131.6288 Q14676;B4DYH4;A2AB05;A1Z5I7;A1Z5I6 Q14676 133 142 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.00061581 83.998 1 0.73478 0.72955 NaN 1 Median 0.73478 0.72955 NaN 1 0 Median NaN NaN NaN 0 0 Median 11932000 6813800 5118400 11932000 6813800 5118400 0 0 0 7621 1738 7796 20162 31610;31611 31610 2 LDVTLGPVPEIGGSEAPAPQNK QCLAEFKRDLEWVERLDVTLGPVPEIGGSE VPEIGGSEAPAPQNKDQKAVDPEDDFQREM R L D N K D 2 0 1 1 0 1 2 3 0 1 2 1 0 0 4 1 1 0 0 2 0 0 22 0 2188.1376 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 70 91 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 5.3998E-22 119.87 2 2 0.97373 0.9852 13.881 4 Median 0.94069 1.1105 0.98535 2 0 Median 1.0005 0.87357 1.0593 2 0 Median 1381300000 706940000 674360000 857270000 443300000 413970000 524030000 263640000 260390000 7622 1316 7797 20163;20164;20165;20166 31612;31613;31614;31615;31616;31617;31618 31614 7 LDVTTQTPLTPEQLR GTEQQGSHLNPEQLRLDVTTQTPLTPEQLR LDVTTQTPLTPEQLRAVENTVQEAVGQDEA R L D L R A 0 1 0 1 0 2 1 0 0 0 3 0 0 0 2 0 4 0 0 1 0 0 15 0 1710.9152 Q5JTZ9 Q5JTZ9 664 678 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 2 0.0012904 62.408 3 1.0477 1.0542 NaN 1 Median 1.0477 1.0542 NaN 1 0 Median NaN NaN NaN 0 0 Median 9314600 3222100 6092500 9314600 3222100 6092500 0 0 0 7623 1809 7798 20167;20168;20169 31619;31620;31621;31622;31623 31623 5 LDYEDIIDDLPCR PGDKTFEEYLDEYYRLDYEDIIDDLPCRFK YRLDYEDIIDDLPCRFKYRTVVPCDFGLST R L D C R F 0 1 0 4 1 0 1 0 0 2 2 0 0 0 1 0 0 0 1 0 0 0 13 0 1635.745 Q8N9T8;A0A024R7C4;B4DUT2;H0YH26 Q8N9T8 510 522 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 1.1427E-08 113.63 2 1 0.8054 0.83597 18.826 3 Median 0.80237 0.81646 3.3399 2 0 Median 1.3129 1.1283 NaN 1 0 Median 35014000 18596000 16417000 28497000 16008000 12490000 6516300 2588500 3927800 7624 1916 7799 20170;20171;20172 31624;31625;31626;31627 31624 4 LDYGQHVVAGTPGR HACIGGTNVGEDIRKLDYGQHVVAGTPGRV KLDYGQHVVAGTPGRVFDMIRRRSLRTRAI K L D G R V 1 1 0 1 0 1 0 3 1 0 1 0 0 0 1 0 1 0 1 2 0 0 14 0 1468.7423 A0A024R8W0;P38919 A0A024R8W0 153 166 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2;3 1.3031E-33 151.66 6 2 2.1502 2.4616 39.599 4 Linear 2.0746 2.3182 3.3775 2 0 Median 1.3839 1.1687 1.4416 2 0 Median 159130000 56062000 103070000 152680000 53573000 99111000 6444400 2488400 3956000 7625 261 7800 20173;20174;20175;20176;20177;20178;20179;20180 31628;31629;31630;31631;31632;31633;31634;31635 31633 8 LDYILGLK RRLVRIGVLDEGKMKLDYILGLKIEDFLER LDEGKMKLDYILGLKIEDFLERRLQTQVFK K L D L K I 0 0 0 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 1 0 0 0 8 0 933.55352 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 94 101 RPS9 40S ribosomal protein S9 yes no 2 0.0083247 79.116 2 2 0.85871 1.0924 20.297 4 Linear 0.87558 1.0307 3.9987 2 0 Median 0.85871 0.7271 1.4573 2 0 Median 1135600000 600650000 534930000 1015800000 536260000 479500000 119810000 64390000 55425000 7626 157 7801 20181;20182;20183;20184 31636;31637;31638;31639;31640;31641;31642;31643;31644;31645;31646;31647;31648;31649 31643 14 LDYLGVSYGLTPR LPPLLLKLNERPAERLDYLGVSYGLTPRLL ERLDYLGVSYGLTPRLLKFWKRAGFVPVYL R L D P R L 0 1 0 1 0 0 0 2 0 0 3 0 0 0 1 1 1 0 2 1 0 0 13 0 1452.7613 Q9H0A0;A0A087WV29 Q9H0A0 706 718 NAT10 N-acetyltransferase 10 yes no 2 1.0249E-08 114.83 2 2 1.0825 1.0889 7.2335 4 Median 0.88546 1.0277 1.1252 2 0 Median 1.3369 1.1621 2.1381 2 0 Median 673530000 318100000 355430000 425590000 207700000 217890000 247940000 110400000 137540000 7627 2023 7802 20185;20186;20187;20188 31650;31651;31652;31653;31654;31655;31656;31657;31658 31651 9 LEAAEDIAYQLSR NSLATAGDGLIELRKLEAAEDIAYQLSRSR RKLEAAEDIAYQLSRSRNITYLPAGQSVLL K L E S R S 3 1 0 1 0 1 2 0 0 1 2 0 0 0 0 1 0 0 1 0 0 0 13 0 1477.7413 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0 Q6PUJ7 241 253 HEL-S-54e;PHB Prohibitin yes no 2 0.00018657 82.171 1 1 1.5823 1.2804 NaN 1 Median NaN NaN NaN 0 0 Median 1.5823 1.2804 NaN 1 0 Median 161160000 3721300 157440000 149490000 0 149490000 11669000 3721300 7948200 7628 730 7803 20189;20190 31659;31660 31660 2 LEAAIAEAEER RLQAEIDNIKNQRAKLEAAIAEAEERGELA QRAKLEAAIAEAEERGELALKDARAKQEEL K L E E R G 4 1 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1200.5986 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 332 342 KRT7 Keratin, type II cytoskeletal 7 no no 2 4.4461E-10 130.98 2 2 1.0441 1.019 21.871 4 Median 1.0477 1.2138 8.2362 2 0 Median 1.0049 0.84876 9.3535 2 0 Median 404670000 199190000 205480000 392420000 191770000 200660000 12249000 7421900 4827000 + 7629 1171;1158 7804 20191;20192;20193;20194 31661;31662;31663;31664;31665;31666 31662 6 LEAAIAEAEERGELALK RLQAEIDNIKNQRAKLEAAIAEAEERGELA AAIAEAEERGELALKDARAKQEELEAALQR K L E L K D 5 1 0 0 0 0 5 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 17 1 1811.9629 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 332 348 KRT7 Keratin, type II cytoskeletal 7 no no 3 9.5017E-05 57.173 2 2 0.97166 0.82599 22.334 3 Median 1.0604 1.2077 NaN 1 0 Median 0.96737 0.82044 0.95267 2 0 Median 51884000 32347000 19537000 31298000 21684000 9614200 20586000 10663000 9923100 + 7630 1171;1158 7805 20195;20196;20197;20198 31667;31668;31669;31670 31667 4 LEAALGEAK TLEGELHDLRGQVAKLEAALGEAKKQLQDE RGQVAKLEAALGEAKKQLQDEMLRRVDAEN K L E A K K 3 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 900.49165 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 172 180 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.0011834 88.819 1 2 1.4455 1.5214 14.642 3 Plateau 1.3428 1.5216 NaN 1 0 Median 1.4618 1.1808 0.56208 2 0 Median 107300000 43168000 64136000 91934000 36979000 54955000 15370000 6188400 9181200 7631 1440 7806 20199;20200;20201 31671;31672;31673;31674;31675 31672 5 LEAALGEAKK TLEGELHDLRGQVAKLEAALGEAKKQLQDE GQVAKLEAALGEAKKQLQDEMLRRVDAENR K L E K K Q 3 0 0 0 0 0 2 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1028.5866 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 172 181 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.044411 44.203 1 1.4265 1.2517 NaN 1 Median NaN NaN NaN 0 0 Median 1.4265 1.2517 NaN 1 0 Median 1782100 667210 1114900 0 0 0 1782100 667210 1114900 7632 1440 7807 20202 31676 31676 1 LEAATQQNQQLR VAEMARQELQETQERLEAATQQNQQLRAQL QERLEAATQQNQQLRAQLSLMAHPGEGDGL R L E L R A 2 1 1 0 0 4 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 12 0 1398.7215 Q08379 Q08379 675 686 GOLGA2 Golgin subfamily A member 2 yes yes 2 1.1491E-20 157.66 1 1 0.78708 0.6832 NaN 1 Median NaN NaN NaN 0 0 Median 0.78708 0.6832 NaN 1 0 Median 10760000 10140000 619380 9527500 9527500 0 1232200 612790 619380 7633 1692 7808 20203;20204 31677;31678 31677 2 LEAEGVPEVSEK MAELAKELPQVSFVKLEAEGVPEVSEKYEI FVKLEAEGVPEVSEKYEISSVPTFLFFKNS K L E E K Y 1 0 0 0 0 0 4 1 0 0 1 1 0 0 1 1 0 0 0 2 0 0 12 0 1285.6402 A0A140VJK1;O76003 A0A140VJK1 68 79 GLRX3 Glutaredoxin-3 yes no 2 0.0050534 51.927 1 2 5.5454 5.4407 NaN 1 Median 5.5454 5.4407 NaN 1 0 Median NaN NaN NaN 0 0 Median 24709000 2978900 21730000 22805000 2978900 19826000 1904500 0 1904500 7634 602 7809 20205;20206;20207 31679;31680;31681;31682 31679 4 LEAEIATYR RQAQEYEALLNIKVKLEAEIATYRRLLEDG LNIKVKLEAEIATYRRLLEDGEDFK_____ K L E Y R R 2 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1064.5502 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 373 381 KRT18 Keratin, type I cytoskeletal 18 no no 2 3.7378E-12 160.26 2 2 1.1309 1.1017 6.6429 4 Median 0.99724 1.1704 1.9203 2 0 Median 1.2551 1.0452 0.80339 2 0 Median 1047300000 508730000 538610000 1011300000 492480000 518800000 36057000 16246000 19811000 + 7635 316;1155 7810 20208;20209;20210;20211 31683;31684;31685;31686;31687;31688;31689;31690;31691;31692 31684 10 LEAELGNMQGLVEDFK NLRRQLETLGQEKLKLEAELGNMQGLVEDF EAELGNMQGLVEDFKNKYEDEINKRTEMEN K L E F K N 1 0 1 1 0 1 3 2 0 0 3 1 1 1 0 0 0 0 0 1 0 0 16 0 1791.8713 CON__P05787;P05787;Q969I0;F8VUG2;F8W1U3;F8VP67;H0YIB2 CON__P05787 161 176 KRT8 Keratin, type II cytoskeletal 8 yes no 2 1.9941E-12 117.07 2 4 1.5012 1.5568 33.087 6 Median 1.5012 1.7304 4.064 2 0 Median 1.4553 1.1809 33.545 4 0 Median 484260000 191500000 292750000 424640000 167080000 257550000 59623000 24422000 35201000 + 7636 1156 7811;7812 20212;20213;20214;20215;20216;20217 31693;31694;31695;31696;31697;31698;31699;31700;31701;31702;31703;31704;31705 31696 864 13 LEAELR GLRGQLEALQVDGGRLEAELRSMQDVVEDF EALQVDGGRLEAELRSMQDVVEDFKNKYED R L E L R S 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 6 0 729.4021 CON__Q3KNV1;P08729;CON__O95678;O95678 CON__Q3KNV1 162 167 KRT7;KRT75 Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 75 no no 2 0.034838 126.68 1 1.0194 1.1689 NaN 1 Median 1.0194 1.1689 NaN 1 0 Median NaN NaN NaN 0 0 Median 82041000 42502000 39539000 82041000 42502000 39539000 0 0 0 + 7637 1171;1147 7813 20218 31706 31706 1 LEAFHER TERRREREQREREQRLEAFHERKEKARLQR EQREREQRLEAFHERKEKARLQRERLQLEC R L E E R K 1 1 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 900.44537 Q14151 Q14151 651 657 SAFB2 Scaffold attachment factor B2 yes yes 2 0.028805 71.342 2 1.273 1.2827 22.541 2 Median 1.273 1.2827 22.541 2 0 Median NaN NaN NaN 0 0 Median 19829000 9135600 10693000 19829000 9135600 10693000 0 0 0 7638 1727 7814 20219;20220 31707;31708 31708 2 LEAIEDDSVK ANECWIQMMRVLQQKLEAIEDDSVKETDSS VLQQKLEAIEDDSVKETDSSSASAATPSKK K L E V K E 1 0 0 2 0 0 2 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1117.5503 A6NJA2;D3DUG9;B2RD79;P54578;B3KTG4 A6NJA2 169 178 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 0.00014589 80.688 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21324000 0 21324000 21324000 0 21324000 0 0 0 7639 686 7815 20221;20222 31709;31710 31710 2 LEAIITPPPAK IHPELLAKKRGSKGKLEAIITPPPAKKAKS SKGKLEAIITPPPAKKAKSPSQKKPVSKKA K L E A K K 2 0 0 0 0 0 1 0 0 2 1 1 0 0 3 0 1 0 0 0 0 0 11 0 1148.6805 O75367;D6RCF2 O75367 124 134 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 3.7938E-10 132.01 2 2 0.97733 1.1444 20.201 4 Linear 0.96945 1.1328 2.5405 2 0 Median 0.97733 0.79951 1.8873 2 0 Median 631910000 328960000 302940000 574530000 299410000 275120000 57380000 29554000 27826000 7640 1401 7816 20223;20224;20225;20226 31711;31712;31713;31714;31715;31716;31717;31718;31719;31720;31721;31722 31713 12 LEALAILLQK LQFPELRLVQFDSGKLEALAILLQKLKSEG FDSGKLEALAILLQKLKSEGRRVLILSQMI K L E Q K L 2 0 0 0 0 1 1 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 10 0 1110.7012 Q96L91 Q96L91 1900 1909 EP400 E1A-binding protein p400 yes yes 2 0.00078342 81.296 2 0.65866 0.72588 NaN 1 Median 0.65866 0.72588 NaN 1 0 Median NaN NaN NaN 0 0 Median 4785100 3234100 1551000 4785100 3234100 1551000 0 0 0 7641 1977 7817 20227;20228 31723;31724;31725 31723 3 LEALPQVESQVAAAR QLESLSAKGRPIPVRLEALPQVESQVAAAR LEALPQVESQVAAARAWRERTGRTFLKKNS R L E A R A 4 1 0 0 0 2 2 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 15 0 1580.8522 E7EV89;B4DVX3;B4DVM9;P29375 E7EV89 656 670 KDM5A Lysine-specific demethylase 5A yes no 2 0.010607 47.288 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7642 1040 7818 20229 31726 31726 1 LEALSVK AGSGKNDHAEKVAEKLEALSVKEETKEDAE HAEKVAEKLEALSVKEETKEDAEEKQ____ K L E V K E 1 0 0 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 7 0 758.4538 A0A140VK94;F6WQW2;P43487;C9JXG8;D3DX26;Q5T0Z6;Q9C010 A0A140VK94 184 190 RANBP1;PKIB Ran-specific GTPase-activating protein;cAMP-dependent protein kinase inhibitor beta yes no 2 0.031506 67.032 2 4.2474 4.4642 0.21331 2 Median 4.2474 4.4642 0.21331 2 0 Median NaN NaN NaN 0 0 Median 77274000 17843000 59431000 77274000 17843000 59431000 0 0 0 7643 621 7819 20230;20231 31727;31728 31727 2 LEAQEQAFLAR KAARLGITMKAKLARLEAQEQAFLARLKGQ KLARLEAQEQAFLARLKGQDPGAPQLQSES R L E A R L 3 1 0 0 0 2 2 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 11 0 1274.6619 Q5T3I0;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 174 184 GPATCH4 G patch domain-containing protein 4 yes no 2 2.9879E-23 172.23 2 2 1.5972 1.5772 20.045 4 Median 1.1875 1.3413 3.8583 2 0 Median 2.1791 1.8838 6.0632 2 0 Median 278030000 116770000 161250000 203640000 91908000 111730000 74387000 24866000 49521000 7644 1820 7820 20232;20233;20234;20235 31729;31730;31731;31732;31733;31734;31735 31730 7 LECQDIINK YTKDLDFKVNKSKQKLECQDIINKHYMEVN NKSKQKLECQDIINKHYMEVNSNEKESCDQ K L E N K H 0 0 1 1 1 1 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1131.5594 Q562F6;B7Z7S9 Q562F6 952 960 SGOL2 Shugoshin-like 2 yes no 2 0.0022437 74.92 1 1 1.5287 1.4227 43.592 2 Median 1.0123 1.0453 NaN 1 0 Median 2.3085 1.9364 NaN 1 0 Median 13082000 5599000 7483100 11461000 5005300 6455300 1621500 593670 1027900 7645 1795 7821 20236;20237 31736;31737;31738 31738 3 LECVEPNCR IFRKKAKTTKKIVLRLECVEPNCRSKRMLA KKIVLRLECVEPNCRSKRMLAIKRCKHFEL R L E C R S 0 1 1 0 2 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1175.5063 B2R4V2;J3KQN4;Q969Q0;P83881;H0Y5B4;H7BZ11 B2R4V2 70 78 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 2 1.0903E-07 138.54 4 2 0.89738 0.91578 9.6514 4 Median 0.71429 0.85095 0.72774 2 0 Median 1.148 1.0026 3.153 2 0 Median 5821100000 3295100000 2526000000 4838100000 2836200000 2001800000 983070000 458900000 524170000 7646 830 7822 20238;20239;20240;20241;20242;20243 31739;31740;31741;31742;31743;31744;31745;31746;31747;31748;31749;31750;31751;31752;31753;31754 31742 16 LEDCVLLATDVAAR MHQKQRLRNLEQFARLEDCVLLATDVAARG RLEDCVLLATDVAARGLDIPKVQHVIHYQV R L E A R G 3 1 0 2 1 0 1 0 0 0 3 0 0 0 0 0 1 0 0 2 0 0 14 0 1544.7868 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;Q59FS7;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0;B4DGI6 B4DKV2 543 556 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.001754 68.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2134100 0 2134100 0 0 0 2134100 0 2134100 7647 993 7823 20244 31755 31755 1 LEDFFAR QSEPFFKATPEEKLKLEDFFARNSYVAGQY ATPEEKLKLEDFFARNSYVAGQYDDAASYQ K L E A R N 1 1 0 1 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 7 0 896.43922 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;Q0PHS1;E7EUI8;B4DYA7;E9PD92;E7EM57;Q0PHS5;A7IZZ3 Q2VF42 58 64 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.014426 100.07 2 2.2835 2.319 4.9191 2 Median 2.2835 2.319 4.9191 2 0 Median NaN NaN NaN 0 0 Median 40329000 12261000 28068000 40329000 12261000 28068000 0 0 0 7648 775 7824 20245;20246 31756;31757;31758 31757 3 LEDLEVIQHR DEKEQWLNNMQIPEKLEDLEVIQHRFESLE QIPEKLEDLEVIQHRFESLEPEMNNQASRV K L E H R F 0 1 0 1 0 1 2 0 1 1 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1250.6619 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 795 804 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 5.6389E-05 85.731 4 1.3706 1.3872 NaN 1 Median 1.3706 1.3872 NaN 1 0 Median NaN NaN NaN 0 0 Median 13925000 2835400 11090000 13925000 2835400 11090000 0 0 0 7649 415 7825 20247;20248;20249;20250 31759;31760;31761;31762 31762 4 LEDLLQDAQDEK LRRKYSCDRSATVTRLEDLLQDAQDEKEQL VTRLEDLLQDAQDEKEQLNEYKGHLSGLAK R L E E K E 1 0 0 3 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1415.678 Q15149 Q15149 897 908 PLEC Plectin yes yes 2 1.8475E-12 125.74 2 2 1.7542 1.757 5.2105 2 Median 1.7542 1.757 5.2105 2 0 Median NaN NaN NaN 0 0 Median 50614000 16539000 34075000 47806000 16539000 31268000 2807500 0 2807500 7650 1754 7826 20251;20252;20253;20254 31763;31764;31765;31766;31767;31768 31766 6 LEDLLR AEDEDLRVHFEESSKLEDLLRKVRAKETRK RVHFEESSKLEDLLRKVRAKETRKRALSRL K L E L R K 0 1 0 1 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 757.4334 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;F1D8P6;B3KUU9;B6ZGS6;Q6I9R9;Q53FZ4;B2RDT1;B4DPR1;D3DV25;P51449 A0A024R1N4 239 244 XRCC6;NR1F3;RORC X-ray repair cross-complementing protein 6;Nuclear receptor ROR-gamma yes no 2 0.0065816 138.38 1 1 0.31457 0.31181 43.693 2 Median 0.37157 0.42468 NaN 1 0 Median 0.26632 0.22893 NaN 1 0 Median 160590000 115790000 44794000 153980000 111100000 42881000 6605900 4693000 1913000 7651 82 7827 20255;20256 31769;31770 31769 2 LEDLLRK AEDEDLRVHFEESSKLEDLLRKVRAKETRK VHFEESSKLEDLLRKVRAKETRKRALSRLK K L E R K V 0 1 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 1 885.52837 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 239 245 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0063137 134.06 2 1 0.39498 0.47007 2.0709 2 Median 0.39498 0.47007 2.0709 2 0 Median NaN NaN NaN 0 0 Median 176420000 128060000 48360000 174260000 125900000 48360000 2158500 2158500 0 7652 82 7828 20257;20258;20259 31771;31772;31773 31771 3 LEDSSNQVTQAVAK DSEELTQRWDSLVQRLEDSSNQVTQAVAKL RLEDSSNQVTQAVAKLGMSQIPQKDLLETV R L E A K L 2 0 1 1 0 2 1 0 0 0 1 1 0 0 0 2 1 0 0 2 0 0 14 0 1488.742 P46939;A8K8Z1 P46939 628 641 UTRN Utrophin yes no 2 0.0045783 58.172 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3605000 0 3605000 3605000 0 3605000 0 0 0 7653 1574 7829 20260;20261 31774;31775;31776 31774 3 LEDVALQILLACPVSK IPDAMNLILLLVTEKLEDVALQILLACPVS EDVALQILLACPVSKEDGPSVFGSFFLQHC K L E S K E 2 0 0 1 1 1 1 0 0 1 4 1 0 0 1 1 0 0 0 2 0 0 16 0 1767.9805 E5KNY5;P42704;B4DSR0;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 350 365 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 5.1128E-05 90.926 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7654 1207 7830 20262 31777 31777 1 LEDVLPLAFTR RKNRSSAVDPEPQVKLEDVLPLAFTRLCEP PQVKLEDVLPLAFTRLCEPKEASYSLIRKY K L E T R L 1 1 0 1 0 0 1 0 0 0 3 0 0 1 1 0 1 0 0 1 0 0 11 0 1272.7078 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 259 269 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 2.7555E-05 101.97 2 2 0.81204 0.82141 9.2161 4 Median 0.76057 0.89088 1.2056 2 0 Median 0.87451 0.75991 0.72737 2 0 Median 853820000 473840000 379980000 612510000 345670000 266830000 241310000 128160000 113150000 7655 1817 7831 20263;20264;20265;20266 31778;31779;31780;31781;31782;31783;31784;31785;31786;31787;31788 31780 11 LEEDINSSMTNSTAASRPPVTLR PTNAIFKAFAMIIDKLEEDINSSMTNSTAA MTNSTAASRPPVTLRLVVPATQCGSLIGKG K L E L R L 2 2 2 1 0 0 2 0 0 1 2 0 1 0 2 4 3 0 0 1 0 0 23 1 2488.2228 Q53SS8;Q15365 Q53SS8 79 101 PCBP1 Poly(rC)-binding protein 1 yes no 3 3.2792E-09 66.874 1 2 2.6745 2.9108 53.979 3 Plateau 2.6745 2.9108 NaN 1 0 Median 1.284 1.1586 13.012 2 0 Median 70770000 20459000 50311000 67109000 19183000 47926000 3660900 1276200 2384700 7656 1759 7832;7833 20267;20268;20269 31789;31790;31791;31792 31790 1628 4 LEEDISSSMTNSTAASRPPVTLR PTNAIFKAFAMIIDKLEEDISSSMTNSTAA MTNSTAASRPPVTLRLVVPASQCGSLIGKG K L E L R L 2 2 1 1 0 0 2 0 0 1 2 0 1 0 2 5 3 0 0 1 0 0 23 1 2461.2119 H3BRU6;F8VZX2;B4DRD7;F8W0G4;F8VXH9;F8W1G6;H3BND9;Q15366;B4DLC0 Q15366 60 82 PCBP2 Poly(rC)-binding protein 2 no no 3 5.5867E-10 79.467 2 3.064 3.4693 3.8148 2 Median 3.064 3.4693 3.8148 2 0 Median NaN NaN NaN 0 0 Median 282510000 64578000 217930000 282510000 64578000 217930000 0 0 0 7657 1263;1760 7834 20270;20271 31793;31794;31795;31796 31795 969 4 LEEDKPAVER AAEEERRLRQRNRLRLEEDKPAVERCLEEL RNRLRLEEDKPAVERCLEELVFGDVENDED R L E E R C 1 1 0 1 0 0 3 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1184.6037 B2RAX6;Q9Y5J1 B2RAX6 56 65 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2;3 1.7084E-14 135.86 4 2 0.85622 0.97397 10.042 5 Median 0.85174 0.97047 4.6869 3 0 Median 1.3393 1.1215 3.6242 2 0 Median 94653000 61380000 33273000 86986000 57966000 29020000 7666800 3413800 4253000 7658 876 7835 20272;20273;20274;20275;20276;20277 31797;31798;31799;31800;31801;31802;31803;31804;31805 31799 9 LEEGEVAMGR SSKTLLCLSLTGPHKLEEGEVAMGRVVKVT TGPHKLEEGEVAMGRVVKVTPNEGLTVSFP K L E G R V 1 1 0 0 0 0 3 2 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1089.5125 Q14690 Q14690 1227 1236 PDCD11 Protein RRP5 homolog yes yes 2 2.4512E-08 115.71 2 2 1.3162 1.3078 36.791 4 Median 1.6855 1.8072 5.1106 2 0 Median 1.1134 0.95837 3.3272 2 0 Median 82909000 30059000 52850000 77270000 27403000 49868000 5638700 2656500 2982200 7659 1741 7836 20278;20279;20280;20281 31806;31807;31808;31809;31810;31811;31812 31806 1583 7 LEEGLVNNK VNLGVLAQKSDFCLKLEEGLVNNKYDTALN SDFCLKLEEGLVNNKYDTALNLLKESGPSG K L E N K Y 0 0 2 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1014.5346 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 775 783 WDR36 WD repeat-containing protein 36 yes no 2 7.9139E-05 110.81 2 1 0.93664 1.0036 5.1058 3 Median 0.93479 1.0043 7.2204 2 0 Median 1.2475 1.0036 NaN 1 0 Median 106270000 53793000 52481000 92431000 47438000 44993000 13842000 6354300 7487700 7660 486 7837 20282;20283;20284 31813;31814;31815;31816;31817;31818 31816 6 LEEGPPVTTVLTR ANDATFEIKKCDLHRLEEGPPVTTVLTRED HRLEEGPPVTTVLTREDGLKYYRMMQTVRR R L E T R E 0 1 0 0 0 0 2 1 0 0 2 0 0 0 2 0 3 0 0 2 0 0 13 0 1410.7718 Q5JPU0;Q5JPT9;Q5JPU1;Q53GE3;A0A024RBX9;P08559;Q5JPU2 Q5JPU0 46 58 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha;Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 2 7.5145E-14 121.08 2 1.9799 2.0438 NaN 1 Median 1.9799 2.0438 NaN 1 0 Median NaN NaN NaN 0 0 Median 41516000 7066700 34450000 41516000 7066700 34450000 0 0 0 7661 349 7838 20285;20286 31819;31820;31821 31821 3 LEELDADK HEDAECEKLMELYERLEELDADKAEMRASR LMELYERLEELDADKAEMRASRILHGLGFT R L E D K A 1 0 0 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 931.44984 A0A090N7X1;A0A090N7Y2;Q9UG63;C9JHK9;C9JZV3 A0A090N7X1 196 203 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.013844 71.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11256000 11256000 0 11256000 11256000 0 0 0 0 7662 455 7839 20287 31822 31822 1 LEELHVIDVK PLDRDNKELKAFNIRLEELHVIDVKFLYGC AFNIRLEELHVIDVKFLYGCQAPTICFVYQ R L E V K F 0 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 2 0 0 10 0 1193.6656 Q16531;F5GY55;B7Z2A1;F5H2L3;F5GWI0 Q16531 159 168 DDB1 DNA damage-binding protein 1 yes no 2;3 9.337E-18 142.43 4 2 1.2652 1.2021 45.782 4 Median 0.72227 0.80755 2.8696 2 0 Median 2.2118 1.7831 2.3595 2 0 Median 201410000 91772000 109640000 159430000 78247000 81179000 41983000 13524000 28458000 7663 1770 7840 20288;20289;20290;20291;20292;20293 31823;31824;31825;31826;31827;31828;31829 31827 7 LEELSLEGNPFLTVNDNLK NNQLGDVTALCQFPKLEELSLEGNPFLTVN SLEGNPFLTVNDNLKVSFLLPTLRKVNGKD K L E L K V 0 0 3 1 0 0 3 1 0 0 5 1 0 1 1 1 1 0 0 1 0 0 19 0 2144.1001 A0A140VJD0;Q9UFC0;H7C5S6;Q59FT0 A0A140VJD0 93 111 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 1.0499E-05 72.891 1 1.1475 1.1857 NaN 1 Median 1.1475 1.1857 NaN 1 0 Median NaN NaN NaN 0 0 Median 9709100 4724000 4985100 9709100 4724000 4985100 0 0 0 7664 599 7841 20294 31830;31831;31832 31830 3 LEELTMDGAK FIGNRRELNEDKLEKLEELTMDGAKAKAIL DKLEKLEELTMDGAKAKAILDASRSSMGMD K L E A K A 1 0 0 1 0 0 2 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1105.5325 A8K9K6;O00567;A0PJ92;Q5JXT2;H0YDU4 A8K9K6 231 240 NOP56 Nucleolar protein 56 yes no 2 7.5666E-05 95.502 2 4 0.99726 0.93828 4.7898 4 Median 0.85985 0.97591 3.1952 2 0 Median 1.1258 0.90738 2.3693 2 0 Median 313060000 168050000 145010000 292520000 162580000 129940000 20541000 5468200 15073000 7665 785 7842;7843 20295;20296;20297;20298;20299;20300 31833;31834;31835;31836;31837;31838;31839;31840;31841 31834 620 9 LEEMFPDEVDTPR EEAEAKMLEKYKQERLEEMFPDEVDTPRDV ERLEEMFPDEVDTPRDVAARIRFQKYRGLK R L E P R D 0 1 0 2 0 0 3 0 0 0 1 0 1 1 2 0 1 0 0 1 0 0 13 0 1576.7079 Q2NL82 Q2NL82 480 492 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 3.7449E-05 94.465 2 2 0.59035 0.55594 50.744 4 Median 0.80803 0.8215 3.0478 2 0 Median 0.39409 0.34573 15.002 2 0 Median 30987000 17028000 13959000 27932000 14937000 12995000 3055200 2091300 963860 7666 1776 7844 20301;20302;20303;20304 31842;31843;31844;31845;31846 31844 1647 4 LEENIDNIK MGQMQVLQMKSEHQKLEENIDNIKRNHNLA KSEHQKLEENIDNIKRNHNLALGRQKGYEE K L E I K R 0 0 2 1 0 0 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1086.5557 Q92878 Q92878 1060 1068 RAD50 DNA repair protein RAD50 yes yes 2 9.1292E-08 140.5 1 0.69229 0.70661 NaN 1 Median 0.69229 0.70661 NaN 1 0 Median NaN NaN NaN 0 0 Median 31313000 17007000 14306000 31313000 17007000 14306000 0 0 0 7667 1953 7845 20305 31847;31848 31847 2 LEEQLENLIEFIR GDFDWVIENHGVEQRLEEQLENLIEFIRSR QRLEEQLENLIEFIRSRL____________ R L E I R S 0 1 1 0 0 1 4 0 0 2 3 0 0 1 0 0 0 0 0 0 0 0 13 0 1644.8723 Q6FGV9;Q15126 Q6FGV9 177 189 PMVK Phosphomevalonate kinase yes no 2 1.179E-29 153.95 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5917100 0 5917100 5917100 0 5917100 0 0 0 7668 1753 7846 20306;20307 31849;31850 31849 2 LEEQLGR ALRALVKEQGDRICRLEEQLGRMENGDA__ EQGDRICRLEEQLGRMENGDA_________ R L E G R M 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 843.44503 Q9NSK3;A0A024R5K1;Q9BR76;Q2NNQ8;A9Z1Z3 Q9NSK3 271 277 DKFZp762I166;CORO1B;FER1L4 Coronin;Coronin-1B;Fer-1-like protein 4 yes no 2 0.0099453 114.54 2 1.3149 1.3352 26.942 2 Median 1.3149 1.3352 26.942 2 0 Median NaN NaN NaN 0 0 Median 28473000 12872000 15601000 28473000 12872000 15601000 0 0 0 7669 184 7847 20308;20309 31851;31852 31851 2 LEEQLQDLDVALK EWFCPPCQHKLLCEKLEEQLQDLDVALKKK EKLEEQLQDLDVALKKKERAERRKERLVYV K L E L K K 1 0 0 2 0 2 2 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 13 0 1512.8035 Q96T23;H0YCN2;H0YDG9 Q96T23 947 959 RSF1 Remodeling and spacing factor 1 yes no 2 3.0932E-19 147.91 1 2 0.89176 0.69083 16.709 3 Median 0.47436 0.54205 NaN 1 0 Median 0.90159 0.71824 5.5027 2 0 Median 182820000 120030000 62790000 157300000 106260000 51033000 25523000 13767000 11756000 7670 1991 7848 20310;20311;20312 31853;31854;31855;31856;31857;31858 31853 6 LEEQMEPR L E P R 0 1 0 0 0 1 3 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 8 0 1030.4753 REV__F5H3Y4 yes no 2 0.015776 60.788 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 7671 2175 7849 20313 31859 31859 2013 1 LEESSTIGQDQTLMER RPLKENPPNKMTQEKLEESSTIGQDQTLME EESSTIGQDQTLMERDTEGGAAEINCNGVI K L E E R D 0 1 0 1 0 2 3 1 0 1 2 0 1 0 0 2 2 0 0 0 0 0 16 0 1835.8571 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9;D6RBF8 Q96SB4 330 345 SRPK1 SRSF protein kinase 1 yes no 2 5.9938E-09 105.65 2 2.5157 2.6043 13.787 2 Median 2.5157 2.6043 13.787 2 0 Median NaN NaN NaN 0 0 Median 52487000 14581000 37907000 52487000 14581000 37907000 0 0 0 7672 1988 7850 20314;20315 31860;31861;31862;31863;31864 31864 1819 5 LEFETYLR TPEQAKTRERSEKIKLEFETYLRRAMKRFN ERSEKIKLEFETYLRRAMKRFNKGVHEDTH K L E L R R 0 1 0 0 0 0 2 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 8 0 1069.5444 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPI9;D2CPJ0 A0A024R2M8 184 191 XPC DNA repair protein complementing XP-C cells yes no 2 0.006912 85.212 2 0.99132 0.83901 11.837 2 Median NaN NaN NaN 0 0 Median 0.99132 0.83901 11.837 2 0 Median 14694000 7628200 7065400 0 0 0 14694000 7628200 7065400 7673 118 7851 20316;20317 31865;31866;31867;31868 31865 4 LEFIQPNVISGIPIYR DKPQFPGASAEFIDKLEFIQPNVISGIPIY EFIQPNVISGIPIYRVMDRQGQIINPSEDP K L E Y R V 0 1 1 0 0 1 1 1 0 4 1 0 0 1 2 1 0 0 1 1 0 0 16 0 1858.0353 F5GXU9;Q658P7;Q59EI3;B2R8A9;A0A024R0K3;Q6ZSA3;F5H5P2;P12694 F5GXU9 65 80 BCKDHA;DKFZp313C0640 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial yes no 2 0.0063673 52.247 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2280800 0 2280800 2280800 0 2280800 0 0 0 7674 50 7852 20318 31869 31869 1 LEFSDETFGSNIPK VIGVLEPLDPEDYTKLEFSDETFGSNIPKQ KLEFSDETFGSNIPKQFVPAVEKVNF____ K L E P K Q 0 0 1 1 0 0 2 1 0 1 1 1 0 2 1 2 1 0 0 0 0 0 14 0 1582.7515 C9IZ01;E5KND7;E5KND5;Q96RP9 C9IZ01 567 580 GFM1 Elongation factor G, mitochondrial yes no 2 0.0017985 68.069 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9584400 0 9584400 9584400 0 9584400 0 0 0 7675 1126 7853 20319;20320 31870;31871;31872 31872 3 LEGALGADTTEDGDEK KMAPSETHGAAAIFKLEGALGADTTEDGDE EGALGADTTEDGDEKSLEKQKHSATTVFGA K L E E K S 2 0 0 3 0 0 3 3 0 0 2 1 0 0 0 0 2 0 0 0 0 0 16 0 1619.7162 Q9NZM1;H0YD14 Q9NZM1 1094 1109 MYOF Myoferlin yes no 2 0.00029949 80.522 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7676 2088 7854 20321;20322 31873;31874 31874 2 LEGLGSSEADQDGLASTVR KSQEHEQRLAALQGRLEGLGSSEADQDGLA GSSEADQDGLASTVRSLGETQLVLYGDVEE R L E V R S 2 1 0 2 0 1 2 3 0 0 3 0 0 0 0 3 1 0 0 1 0 0 19 0 1903.9123 B3KVX6;Q8TB01;Q6NWZ1;A0A024RBH2;Q07065 B3KVX6 374 392 CKAP4 Cytoskeleton-associated protein 4 yes no 2 1.6061E-13 103.76 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3039000 0 3039000 3039000 0 3039000 0 0 0 7677 338 7855 20323;20324 31875;31876;31877 31876 3 LEGLTDEINFLR DVDEAYMNKVELESRLEGLTDEINFLRQLY ESRLEGLTDEINFLRQLYEEEIRELQSQIS R L E L R Q 0 1 1 1 0 0 2 1 0 1 3 0 0 1 0 0 1 0 0 0 0 0 12 0 1418.7405 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__H-INV:HIT000292931;F8W1U3;F8VP67 CON__P05787 214 225 KRT8 Keratin, type II cytoskeletal 8 yes no 2 5.6831E-60 205.59 5 2 1.2579 1.2705 10.983 5 Median 1.0676 1.2659 1.5672 3 0 Median 1.765 1.5343 0.24166 2 0 Median 1805600000 847750000 957880000 1540900000 753960000 786960000 264710000 93796000 170920000 + 7678 1156 7856 20325;20326;20327;20328;20329;20330;20331 31878;31879;31880;31881;31882;31883;31884;31885;31886;31887;31888;31889;31890;31891 31883 13 LEGTEDLSDVLVR AFACLLHLANEKNLKLEGTEDLSDVLVRQG LKLEGTEDLSDVLVRQGD____________ K L E V R Q 0 1 0 2 0 0 2 1 0 0 3 0 0 0 0 1 1 0 0 2 0 0 13 0 1444.7409 A8K4T8;Q15003;B4DRG7;E9PHA2;H7C415 A8K4T8 726 738 NCAPH Condensin complex subunit 2 yes no 2 2.824E-40 188.28 4 2 1.0307 1.037 23.73 4 Median 0.72095 0.84833 0.65135 2 0 Median 1.4705 1.2789 1.905 2 0 Median 1330300000 748220000 582100000 1071200000 642840000 428350000 259120000 105370000 153750000 7679 740 7857 20332;20333;20334;20335;20336;20337 31892;31893;31894;31895;31896;31897;31898;31899;31900;31901;31902;31903;31904;31905;31906;31907;31908;31909;31910 31899 19 LEGVLAEVAQHYQDTLIR DAQKTLQALQIPAAKLEGVLAEVAQHYQDT VLAEVAQHYQDTLIRAKREKAQEIQDESAV K L E I R A 2 1 0 1 0 2 2 1 1 1 3 0 0 0 0 0 1 0 1 2 0 0 18 0 2054.0797 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 568 585 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 3 1.3203E-12 109.42 2 1.804 1.8426 1.1498 2 Median 1.804 1.8426 1.1498 2 0 Median NaN NaN NaN 0 0 Median 27741000 11636000 16104000 27741000 11636000 16104000 0 0 0 7680 352 7858 20338;20339 31911;31912;31913 31911 3 LEHDVNIQFPDK PKIIGRKGAVITQIRLEHDVNIQFPDKDDG QIRLEHDVNIQFPDKDDGNQPQDQITITGY R L E D K D 0 0 1 2 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 1 0 0 12 0 1453.7201 A0A024R4E5;Q00341;B2R5V9;B4DKR8;Q96CF6;Q2HJC8 A0A024R4E5 1080 1091 HDLBP Vigilin yes no 3 0.0061329 39.73 1 1.8077 1.9222 NaN 1 Median 1.8077 1.9222 NaN 1 0 Median NaN NaN NaN 0 0 Median 15868000 6751200 9116700 15868000 6751200 9116700 0 0 0 7681 154 7859 20340 31914 31914 1 LEHVVEEEK RFRFGPLTPELMVPRLEHVVEEEKVDISED ELMVPRLEHVVEEEKVDISEDGMKALVTLS R L E E K V 0 0 0 0 0 0 4 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 1110.5557 Q6LES9;A8K3S0;Q59GW7;P40937;A8K4Z2 Q6LES9 186 194 RFC5 Replication factor C subunit 5 yes no 2;3 5.5253E-25 181.41 3 1.143 1.1531 5.5193 3 Median 1.143 1.1531 5.5193 3 0 Median NaN NaN NaN 0 0 Median 67995000 31087000 36908000 67995000 31087000 36908000 0 0 0 7682 726 7860 20341;20342;20343 31915;31916;31917;31918;31919;31920 31918 6 LEIDLLK REKLTSKEECLSSQKLEIDLLKSSKEELNN EECLSSQKLEIDLLKSSKEELNNSLKATTQ K L E L K S 0 0 0 1 0 0 1 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 7 0 842.51132 P49454;Q9UHT7;A0A087WTY4;G0ZI12;E9PDD2;Q53FL7;P19320 P49454 2840 2846 CENPF;VCAM1 Centromere protein F;Vascular cell adhesion protein 1 yes no 2 0.028306 72.138 1 1.26 1.2403 NaN 1 Median 1.26 1.2403 NaN 1 0 Median NaN NaN NaN 0 0 Median 19783000 8234200 11549000 19783000 8234200 11549000 0 0 0 7683 1581 7861 20344 31921 31921 1 LEIENLNLAQK QLKKQIKDQSLTLSKLEIENLNLAQKLHEN TLSKLEIENLNLAQKLHENLEEMKSVMKER K L E Q K L 1 0 2 0 0 1 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1283.7085 A0A087X0P0;Q02224 A0A087X0P0 1866 1876 CENPE Kinesin-like protein;Centromere-associated protein E yes no 2 0.031594 38.086 1 1.4623 1.2224 NaN 1 Median NaN NaN NaN 0 0 Median 1.4623 1.2224 NaN 1 0 Median 1663400 694150 969210 0 0 0 1663400 694150 969210 7684 445 7862 20345 31922 31922 1 LEILQIHTK FDREVDIGIPDATGRLEILQIHTKNMKLAD PDATGRLEILQIHTKNMKLADDVDLEQVAN R L E T K N 0 0 0 0 0 1 1 0 1 2 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1093.6495 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 V9HW80 378 386 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 3 0.0086312 46.819 1 1.2261 1.2738 NaN 1 Median 1.2261 1.2738 NaN 1 0 Median NaN NaN NaN 0 0 Median 11177000 5706800 5470100 11177000 5706800 5470100 0 0 0 7685 1613 7863 20346 31923 31923 1 LEILQQQLQVANEAR ALKQLEALEKEKAAKLEILQQQLQVANEAR LEILQQQLQVANEARDSAQTSVTQAQREKA K L E A R D 2 1 1 0 0 4 2 0 0 1 3 0 0 0 0 0 0 0 0 1 0 0 15 0 1751.953 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 617 631 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 6.074E-22 142.91 2 2 1.1035 1.0531 17.266 4 Median 0.85417 0.90212 2.286 2 0 Median 1.4066 1.2154 0.67289 2 0 Median 139000000 65893000 73109000 70213000 38141000 32072000 68788000 27751000 41037000 7686 186;1747;718 7864 20347;20348;20349;20350 31924;31925;31926;31927;31928;31929;31930;31931;31932;31933;31934;31935 31926 12 LEINCQDPSIK HVVTDEDEPALKRQRLEINCQDPSIKSFLY KRQRLEINCQDPSIKSFLYSINQTICLRLD R L E I K S 0 0 1 1 1 1 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 0 11 0 1315.6442 A0A0S2Z696;B3KM38;A0A0S2Z5C2;A0A0S2Z5G4;B4DE54;A0A0S2Z5M2;Q8N9N5;C9JYB6;C9JGM9;C9JF73;C9JTM8;E9PJI6;C9J811;D3DUN6 A0A0S2Z696 44 54 BANP Protein BANP yes no 2 0.039138 44.863 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7687 579 7865 20351 31936 31936 1 LEINFEELLK EMYKTISQEFLTPGKLEINFEELLKQK___ LTPGKLEINFEELLKQK_____________ K L E L K Q 0 0 1 0 0 0 3 0 0 1 3 1 0 1 0 0 0 0 0 0 0 0 10 0 1246.6809 E7ETM8;B4DDI0;E7EUA0;B4DUN9;H7BXY5;D3DQ79;Q0ZGT2 E7ETM8 310 319 NEXN Nexilin yes no 2 0.0020391 71.614 2 2.404 2.6769 NaN 1 Median 2.404 2.6769 NaN 1 0 Median NaN NaN NaN 0 0 Median 5914800 1041100 4873700 5914800 1041100 4873700 0 0 0 7688 959 7866 20352;20353 31937;31938 31937 2 LEIYVVTAEGLRPVK TSAEDLNLLIAKNTRLEIYVVTAEGLRPVK LEIYVVTAEGLRPVKEVGMYGKIAVMELFR R L E V K E 1 1 0 0 0 0 2 1 0 1 2 1 0 0 1 0 1 0 1 3 0 0 15 1 1685.9716 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;F5GZY8;F5GYG8;F5H198 Q16531 39 53 DDB1 DNA damage-binding protein 1 yes no 2;3 4.3416E-05 103.88 4 4 0.93709 0.92879 13.392 8 Median 0.7234 0.84745 2.306 4 0 Median 1.2555 1.0815 6.5152 4 0 Median 559980000 326790000 233200000 478650000 288230000 190420000 81331000 38554000 42777000 7689 1770 7867 20354;20355;20356;20357;20358;20359;20360;20361 31939;31940;31941;31942;31943;31944;31945;31946;31947;31948;31949;31950;31951;31952 31952 14 LELDALR QQEVEKLARENSSMRLELDALRSKYEALQT ARENSSMRLELDALRSKYEALQTFARTVAR R L E L R S 1 1 0 1 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 828.47052 A0A024R804;A8WFP5;O60675;A0A024R8X1;O15525;Q9ULX9;B0QY70;B0QY71 A0A024R804 102 108 MAFK;hCG_1991559;MAFG;MAFF Transcription factor MafK;Transcription factor MafG;Transcription factor MafF no no 2 0.014014 101.21 2 1.3477 1.5408 0.88092 2 Median 1.3477 1.5408 0.88092 2 0 Median NaN NaN NaN 0 0 Median 307720000 130550000 177170000 307720000 130550000 177170000 0 0 0 7690 239;262;2112 7868 20362;20363 31953;31954;31955;31956 31956 4 LELEQTYQAK EELRSQHDEQVRLYKLELEQTYQAKLDSAK VRLYKLELEQTYQAKLDSAKLSSDQNDKAA K L E A K L 1 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 10 0 1221.6241 Q03252;A0A0A7M1X5 Q03252 276 285 LMNB2 Lamin-B2 yes no 2 1.438E-40 197.3 2 1 0.81096 0.91085 NaN 1 Median 0.81096 0.91085 NaN 1 0 Median NaN NaN NaN 0 0 Median 108650000 34916000 73735000 108650000 34916000 73735000 0 0 0 7691 1682 7869 20364;20365;20366 31957;31958;31959;31960 31957 4 LELFPVELEK MAASAEYELEKRVERLELFPVELEKDSEGL KRVERLELFPVELEKDSEGLGISIIGMGAG R L E E K D 0 0 0 0 0 0 3 0 0 0 3 1 0 1 1 0 0 0 0 1 0 0 10 0 1215.6751 D3DTX6;Q96SB3;B7ZLX4;D6W5R0;A4D1I0;Q9ULJ8 D3DTX6 492 501 PPP1R9B;PPP1R9A;hCG_1741805 Neurabin-2;Neurabin-1 yes no 2 0.013042 49.813 1 2 2.7005 2.4853 43.643 2 Median 1.8181 1.8254 NaN 1 0 Median 4.0111 3.3837 NaN 1 0 Median 8109000 2145100 5963900 5136200 1545200 3591000 2972800 599890 2372900 7692 1190 7870 20367;20368;20369 31961;31962;31963;31964 31961 4 LELLAAYEEVIR ______________________________ GHRLELLAAYEEVIREESAADWALYTYEDG R L E I R E 2 1 0 0 0 0 3 0 0 1 3 0 0 0 0 0 0 0 1 1 0 0 12 0 1417.7817 Q16643;D6R9W4;D6RFI1 Q16643 11 22 DBN1 Drebrin yes no 2 0.00019951 81.865 2 1.2335 1.264 2.0498 2 Median 1.2335 1.264 2.0498 2 0 Median NaN NaN NaN 0 0 Median 11533000 4999800 6533600 11533000 4999800 6533600 0 0 0 7693 1773 7871 20370;20371 31965;31966;31967 31966 2 LELLLQK EAERNKMIGKRANERLELLLQKRKELQENQ IGKRANERLELLLQKRKELQENQDEIENMM R L E Q K R 0 0 0 0 0 1 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 7 0 855.54295 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;Q6AI02;Q4LE48;Q8WVM7;Q68DW7;B1AMT4 B2R8Y6 195 201 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2;DKFZp686P168;STAG1 variant protein;STAG1;DKFZp781D1416 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.032276 65.803 1 0.81125 0.80978 NaN 1 Median 0.81125 0.80978 NaN 1 0 Median NaN NaN NaN 0 0 Median 9714700 4677200 5037500 9714700 4677200 5037500 0 0 0 7694 863 7872 20372 31968 31968 1 LELQGPR LNSCNKREIEGRAIRLELQGPRGSPNAGSQ EIEGRAIRLELQGPRGSPNAGSQPSKTLFV R L E P R G 0 1 0 0 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 811.4552 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 478 484 NCL Nucleolin yes no 2 0.013268 103.28 2 2 0.82928 0.8124 60.228 4 Median 1.1647 1.3652 0.20737 2 0 Median 0.59071 0.48101 0.92223 2 0 Median 703290000 353480000 349810000 675650000 335860000 339790000 27640000 17617000 10022000 7695 151 7873 20373;20374;20375;20376 31969;31970;31971;31972;31973;31974;31975 31972 7 LELQNVPR YSYIRDDLFTSEIFKLELQNVPRHASFSDV FTSEIFKLELQNVPRHASFSDVRRFLGRFG K L E P R H 0 1 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 967.54508 F2Z2W7;Q8IZ69;B4E213;C9K041 F2Z2W7 75 82 TRMT2A tRNA (uracil-5-)-methyltransferase homolog A yes no 2 0.045764 56.011 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7696 1254 7874 20377 31976 31976 1 LELSVHLQPITR KMGKTIHKYVHLFPKLELSVHLQPITRSTL FPKLELSVHLQPITRSTLKVELTITPDFQW K L E T R S 0 1 0 0 0 1 1 0 1 1 3 0 0 0 1 1 1 0 0 1 0 0 12 0 1404.8089 O75643;A4FU77 O75643 1184 1195 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 6.2674E-05 79.492 2 1.0089 1.1708 NaN 1 Median 1.0089 1.1708 NaN 1 0 Median NaN NaN NaN 0 0 Median 58667000 28400000 30267000 58667000 28400000 30267000 0 0 0 7697 1411 7875 20378;20379 31977;31978 31978 2 LEMEGITVK PELAKMSQEEVNVFRLEMEGITVKGKGCPK EVNVFRLEMEGITVKGKGCPKPIKSWVQCG R L E V K G 0 0 0 0 0 0 2 1 0 1 1 1 1 0 0 0 1 0 0 1 0 0 9 0 1018.5369 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 355 363 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0088308 52.255 1 2.0537 2.0736 NaN 1 Median 2.0537 2.0736 NaN 1 0 Median NaN NaN NaN 0 0 Median 16314000 6550500 9763200 16314000 6550500 9763200 0 0 0 7698 511 7876 20380 31979 31979 357 1 LEMLEK NELAHLATHGPENPKLEMLEKILQRQFSSS ATHGPENPKLEMLEKILQRQFSSSNSPRGI K L E E K I 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 6 0 761.39933 B3KUP5;B7Z455;B4DV26;A0A024R1Y5;Q5IBP5;A0A087WX84;A4D1E4;Q96KG3;A0A0A0MRE9;A0A0A0MRF6;Q96C10;Q99996 REV__Q9UEL2 314 319 LGP2;AKAP9;DHX58 Probable ATP-dependent RNA helicase DHX58;A-kinase anchor protein 9 yes no 2 0.0199 91.584 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32134000 0 32134000 32134000 0 32134000 0 0 0 7699 96 7877 20381;20382;20383 31980;31981;31982 31981 86 3 LENDQIESLR PAGHQIGTVSPLFQRLENDQIESLRQRFGG PLFQRLENDQIESLRQRFGGGQAKTSPKPA R L E L R Q 0 1 1 1 0 1 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1215.6095 A8K492;P56192;B4DF61;H0YIP0;H0YI94;H0YHL6;H0YI27 A8K492 805 814 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 9.337E-18 142.43 1 3 1.2942 1.082 NaN 1 Median NaN NaN NaN 0 0 Median 1.2942 1.082 NaN 1 0 Median 4863200 1452300 3410900 0 0 0 4863200 1452300 3410900 7700 732 7878 20384;20385;20386;20387 31983;31984;31985;31986;31987 31983 5 LENEIQTYR CQNTEYQQLLDIKIRLENEIQTYRSLLEGE LDIKIRLENEIQTYRSLLEGEGSSGGGGRG R L E Y R S 0 1 1 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1164.5775 CON__P13645;P13645;CON__P02535-1 CON__P13645 442 450 KRT10 Keratin, type I cytoskeletal 10 yes no 2 5.5383E-09 130.75 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 621880000 621880000 0 595230000 595230000 0 26649000 26649000 0 + 7701 1161 7879 20388;20389;20390 31988;31989;31990;31991 31990 4 LENVLFGPHDCSHAPPDGYPIIPTSGSVPVQK AAGVKKSGPLPSAERLENVLFGPHDCSHAP GYPIIPTSGSVPVQKQASLFPDEKEDNLLG R L E Q K Q 1 0 1 2 1 1 1 3 2 2 2 1 0 1 6 3 1 0 1 3 0 0 32 0 3427.6871 Q01780 Q01780 602 633 EXOSC10 Exosome component 10 yes yes 4 0.00013241 38.857 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10004000 0 10004000 0 0 0 10004000 0 10004000 7702 1676 7880 20391;20392 31992;31993 31993 2 LENYFEELLK EFNEPDSEVANAGIKLENYFEELLKNLYPE NAGIKLENYFEELLKNLYPEKRFPKPEFRN K L E L K N 0 0 1 0 0 0 3 0 0 0 3 1 0 1 0 0 0 0 1 0 0 0 10 0 1296.6602 A0A024R784;O15164;B4DYZ9 A0A024R784 959 968 TRIM24 Transcription intermediary factor 1-alpha yes no 2 1.0181E-08 123.86 2 2 1.3925 1.3225 6.7095 4 Median 1.3116 1.3225 0.84611 2 0 Median 1.5626 1.2745 10.986 2 0 Median 30079000 13374000 16705000 25356000 11423000 13933000 4723000 1950600 2772400 7703 217 7881 20393;20394;20395;20396 31994;31995;31996;31997;31998;31999;32000 31994 7 LEPANEEHNVETAEDSEIR TQACLASKHVQEAPRLEPANEEHNVETAED NEEHNVETAEDSEIRYLSADSGDADDSDAD R L E I R Y 2 1 2 1 0 0 6 0 1 1 1 0 0 0 1 1 1 0 0 1 0 0 19 0 2180.9822 B4DZG2;A0A024R8C1;Q15361 B4DZG2 457 475 TTF1 Transcription termination factor 1 yes no 3 4.7156E-23 115.98 2 1 1.0824 1.2332 8.6446 3 Median 1.0507 1.161 8.5377 2 0 Median 1.5028 1.2923 NaN 1 0 Median 102350000 46384000 55971000 95545000 43363000 52182000 6809400 3020200 3789200 7704 247 7882 20397;20398;20399 32001;32002;32003;32004;32005 32001 5 LEPHEGLLLR PGREEGSPLELERLKLEPHEGLLLRFPYAA LERLKLEPHEGLLLRFPYAA__________ K L E L R F 0 1 0 0 0 0 2 1 1 0 4 0 0 0 1 0 0 0 0 0 0 0 10 0 1175.6663 B4E2Z3;F5GZS6;J3KPF3;P08195;F5GZI0 B4E2Z3 497 506 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 0.027744 31.11 1 1.2414 1.2437 NaN 1 Median 1.2414 1.2437 NaN 1 0 Median NaN NaN NaN 0 0 Median 11336000 5767900 5568200 11336000 5767900 5568200 0 0 0 7705 1072 7883 20400 32006;32007 32007 2 LEPIETNQNAVFQYISR EAIYPSVDKREYIIKLEPIETNQNAVFQYI PIETNQNAVFQYISRTDNPIEVTESSSTPE K L E S R T 1 1 2 0 0 2 2 0 0 2 1 0 0 1 1 1 1 0 1 1 0 0 17 0 2021.0218 Q2TB10;B7Z4V7;A0A087WXB4;C9JHX9;Q49A13;Q4G0T8 Q2TB10 133 149 ZNF800 Zinc finger protein 800 yes no 2 1.0688E-09 103.85 3 2 1.5284 1.2555 7.4789 3 Median 1.0795 1.1188 NaN 1 0 Median 1.5533 1.2712 1.7575 2 0 Median 81090000 37032000 44057000 52167000 25191000 26976000 28922000 11841000 17081000 7706 1777 7884 20401;20402;20403;20404;20405 32008;32009;32010;32011;32012;32013;32014;32015;32016;32017 32011 10 LEPLYSPIR IHSWIHPWLPLMQARLEPLYSPIRSKLSSA PLMQARLEPLYSPIRSKLSSALQKWHPSDS R L E I R S 0 1 0 0 0 0 1 0 0 1 2 0 0 0 2 1 0 0 1 0 0 0 9 0 1086.6073 Q8N523;A0A024R1I7;Q9UBB9;B4DPE5;B4DSX8 Q8N523 563 571 TFIP11 Tuftelin-interacting protein 11 yes no 2 0.027097 47.198 1 0.84792 0.84255 NaN 1 Median 0.84792 0.84255 NaN 1 0 Median NaN NaN NaN 0 0 Median 16193000 10609000 5584500 16193000 10609000 5584500 0 0 0 7707 77 7885 20406 32018 32018 1 LEPSTSTDQPVTPEPTSQATR SSGKTPETLVPTAPKLEPSTSTDQPVTPEP TDQPVTPEPTSQATRGRTNRSSVKTPETVV K L E T R G 1 1 0 1 0 2 2 0 0 0 1 0 0 0 4 3 5 0 0 1 0 0 21 0 2241.0761 Q14676;B4DYH4 Q14676 1414 1434 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 8.2821E-05 50.155 2 1 0.45164 0.41475 38.279 2 Median 0.54979 0.54367 NaN 1 0 Median 0.37101 0.31639 NaN 1 0 Median 23114000 16360000 6754000 17517000 12990000 4526900 5596300 3369100 2227100 7708 1738 7886 20407;20408;20409 32019;32020;32021;32022;32023;32024 32022 6 LEPTNVQTVTCSPR LSRALNKAKNSSDAKLEPTNVQTVTCSPRV KLEPTNVQTVTCSPRVKALPLSPRKRLGDD K L E P R V 0 1 1 0 1 1 1 0 0 0 1 0 0 0 2 1 3 0 0 2 0 0 14 0 1600.7879 B2R935;A0A024R1S2;Q99741;J3KTI7;J3QR52;J3QLN7 B2R935 34 47 CDC6 Cell division control protein 6 homolog yes no 2 0.0026193 61.344 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7709 85 7887 20410 32025 32025 1 LEQDEYALR GHSADRLAAAFAVSRLEQDEYALRSHSLAK AFAVSRLEQDEYALRSHSLAKKAQDEGLLS R L E L R S 1 1 0 1 0 1 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1135.551 P55084;B4DY96;F5GZQ3;D6W539;B4DDC9 P55084 239 247 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 4.3018E-11 133.86 2 2 1.3808 1.401 NaN 1 Median 1.3808 1.401 NaN 1 0 Median NaN NaN NaN 0 0 Median 45142000 27857000 17285000 41601000 24316000 17285000 3540800 3540800 0 7710 1615 7888 20411;20412;20413;20414 32026;32027;32028;32029;32030 32028 5 LEQEIATYR QQNQEYKILLDVKTRLEQEIATYRRLLEGE LDVKTRLEQEIATYRRLLEGEDAHLSSSQF R L E Y R R 1 1 0 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1121.5717 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;CON__A2A4G1;Q13092;CON__Q9Z2K1;CON__Q3ZAW8;A8MT21;CON__P35900;CON__Q9D312;P35900;CON__Q8N1A0;Q8N1A0;CON__Q04695;Q04695;F5GWP8;Q14666;B4DE59;CON__P08779;P08779;CON__Q61782 CON__P02533 408 416 KRT14;K14;KRT15;KRT20;KRT222;KRT17;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 20;Keratin-like protein KRT222;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16 no no 2 5.7217E-06 116.37 3 1.2523 1.2808 NaN 1 Median 1.2523 1.2808 NaN 1 0 Median NaN NaN NaN 0 0 Median 86537000 77123000 9414300 86537000 77123000 9414300 0 0 0 + 7711 1150;1159;1168;964;1176 7889 20415;20416;20417 32031;32032;32033 32032 3 LEQELFSGGNTGINFEK SDEDDWSKPLPPSERLEQELFSGGNTGINF QELFSGGNTGINFEKYDDIPVEATGNNCPP R L E E K Y 0 0 2 0 0 1 3 3 0 1 2 1 0 2 0 1 1 0 0 0 0 0 17 0 1881.9109 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;A0A024R9A4;O15523;B4DLU5;B4E010;C9J8G5;C9J081;B4E3C4;A0A0J9YYH6 A0A0D9SFB3 146 162 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 7.7692E-18 126.56 2 2 1.4478 1.3717 36.034 4 Median 1.6705 1.87 5.2669 2 0 Median 1.2618 1.0063 5.2587 2 0 Median 188360000 71378000 116980000 154200000 56894000 97302000 34163000 14484000 19679000 7712 522 7890 20418;20419;20420;20421 32034;32035;32036;32037;32038;32039;32040;32041;32042;32043 32039 10 LEQELTEGR FLREREEHLLEQLAKLEQELTEGREKFKSR LEQLAKLEQELTEGREKFKSRGVGELARLA K L E G R E 0 1 0 0 0 1 3 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1073.5353 A0A024RCP3;Q12899;A2AE48;A0A0G2JIW2 A0A024RCP3 213 221 TRIM26 Tripartite motif-containing protein 26 yes no 2 8.915E-06 128.38 1 1 0.59321 0.60682 NaN 1 Median 0.59321 0.60682 NaN 1 0 Median NaN NaN NaN 0 0 Median 36838000 21859000 14979000 35431000 20451000 14979000 1407300 1407300 0 7713 365 7891 20422;20423 32044;32045;32046 32044 3 LEQGGTADGLR KYDEELEGERPHSFRLEQGGTADGLREREL HSFRLEQGGTADGLRERELEEIRAKLRLQA R L E L R E 1 1 0 1 0 1 1 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1115.5571 O43290;B4DDH9 O43290 351 361 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 6.7214E-10 127.4 2 1 0.9593 0.97934 27.05 3 Plateau 0.9492 0.96511 3.8728 2 0 Median 0.70418 0.60555 NaN 1 0 Median 29805000 15366000 14439000 28754000 14681000 14073000 1050900 684310 366580 7714 1384 7892 20424;20425;20426 32047;32048;32049;32050;32051 32048 5 LEQGQAIDDLMPAQK MVVDGVKLLIEMEQRLEQGQAIDDLMPAQK LEQGQAIDDLMPAQK_______________ R L E Q K - 2 0 0 2 0 3 1 1 0 1 2 1 1 0 1 0 0 0 0 0 0 0 15 0 1655.8189 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;H0YJG0 V9HWH2 367 381 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 3.715E-16 120.84 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13868000 0 13868000 13868000 0 13868000 0 0 0 7715 557 7893 20427;20428;20429;20430 32052;32053;32054;32055;32056 32056 413 5 LEQIAAEQK ELTQIKSNIDALLSRLEQIAAEQKANPDGK DALLSRLEQIAAEQKANPDGKKKGDGGGAS R L E Q K A 2 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1028.5502 A8K4T9;Q53GL6;Q5QPL9;Q9UKM9;Q5QPM0 A8K4T9 192 200 RALY RNA-binding protein Raly yes no 2 1.1093E-11 154.49 2 1 1.0269 1.1392 53.152 3 Median 1.0972 1.1985 7.1813 2 0 Median 0.57788 0.47935 NaN 1 0 Median 88604000 40945000 47659000 86812000 39772000 47040000 1792200 1173200 619060 7716 741 7894 20431;20432;20433 32057;32058;32059 32057 3 LEQIDGHIAEHNSK NEHALQKDALSIKLKLEQIDGHIAEHNSKI KLEQIDGHIAEHNSKIKYWHKEISKISLHP K L E S K I 1 0 1 1 0 1 2 1 2 2 1 1 0 0 0 1 0 0 0 0 0 0 14 0 1589.7798 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1018 1031 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 1.3099E-132 257.2 4 2 0.92139 1.0298 20.816 6 Median 0.87938 0.98089 8.0199 4 0 Median 1.7799 1.4366 2.0517 2 0 Median 444120000 232370000 211750000 402670000 217910000 184760000 41447000 14460000 26986000 7717 2070 7895 20434;20435;20436;20437;20438;20439 32060;32061;32062;32063;32064;32065;32066;32067;32068;32069;32070;32071;32072 32067 13 LEQLFQDEVAK SLLQRERFIEQEKAKLEQLFQDEVAKAQQL EKAKLEQLFQDEVAKAQQLREEQQRQQQQM K L E A K A 1 0 0 1 0 2 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1318.6769 Q15149;D3DWL0;H0YDN1 Q15149 2653 2663 PLEC;PLEC1 Plectin yes no 2 4.0351E-08 112.75 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20252000 0 20252000 20252000 0 20252000 0 0 0 7718 1754 7896 20440 32073 32073 1 LEQPDLSSEMSK PDQRRLPPEQESLSRLEQPDLSSEMSKVSK LSRLEQPDLSSEMSKVSKPRASKPGRKRGG R L E S K V 0 0 0 1 0 1 2 0 0 0 2 1 1 0 1 3 0 0 0 0 0 0 12 0 1362.6337 Q8WUA4;Q53QN0;A0A087WZD8;C9JNH7 Q8WUA4 79 90 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 8.7845E-05 74.962 2 1.1353 1.1589 4.9853 2 Median 1.1353 1.1589 4.9853 2 0 Median NaN NaN NaN 0 0 Median 44292000 20952000 23339000 44292000 20952000 23339000 0 0 0 7719 1938 7897 20441;20442 32074;32075;32076;32077 32074 1774 4 LEQQSVPAAVFGSLK DEDEDEMDLEPNEVRLEQQSVPAAVFGSLK LEQQSVPAAVFGSLKED_____________ R L E L K E 2 0 0 0 0 2 1 1 0 0 2 1 0 1 1 2 0 0 0 2 0 0 15 0 1572.8512 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 690 704 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 0.00054215 55.261 2 1.2124 1.213 6.0359 2 Median 1.2124 1.213 6.0359 2 0 Median NaN NaN NaN 0 0 Median 21864000 9728400 12136000 21864000 9728400 12136000 0 0 0 7720 1838 7898 20443;20444 32078;32079;32080;32081;32082 32080 5 LERPPETPTVDPTVK EGRPGKKLKKVKLRKLERPPETPTVDPTVK LERPPETPTVDPTVKYERQPEYLDATGGTL K L E V K Y 0 1 0 1 0 0 2 0 0 0 1 1 0 0 4 0 3 0 0 2 0 0 15 1 1677.8938 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 690 704 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.00010132 62.861 2 2 1.1738 1.1901 30.395 4 Median 0.76535 0.91273 2.4346 2 0 Median 1.8201 1.5439 1.7212 2 0 Median 259660000 147900000 111760000 241280000 141330000 99947000 18380000 6571200 11809000 7721 515 7899 20445;20446;20447;20448 32083;32084;32085;32086;32087;32088 32084 6 LESDYEILER RLLILMEARLSALYKLESDYEILERFPGAY SALYKLESDYEILERFPGAYLKGKKYRPLF K L E E R F 0 1 0 1 0 0 3 0 0 1 2 0 0 0 0 1 0 0 1 0 0 0 10 0 1265.6139 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2;Q5TCD1 Q59G75 286 295 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 1.5494E-05 101.11 1 2 1.6102 1.6661 57.97 3 Plateau 1.6102 1.6661 NaN 1 0 Median 0.73548 0.62066 14.858 2 0 Median 28385000 14096000 14289000 20325000 9280900 11044000 8060200 4815200 3245000 7722 1561 7900 20449;20450;20451 32089;32090;32091;32092 32089 4 LESEEEGVPSTAIR RHKTTGQVVAMKKIRLESEEEGVPSTAIRE RLESEEEGVPSTAIREISLLKELRHPNIVS R L E I R E 1 1 0 0 0 0 4 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 14 0 1515.7417 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;A0A024QZJ8;E5RIU6;B7Z3D6 A0A024QZP7 37 50 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 1.1674E-69 203.03 2 1.3159 1.4946 2.2071 2 Median 1.3159 1.4946 2.2071 2 0 Median NaN NaN NaN 0 0 Median 172420000 74177000 98241000 172420000 74177000 98241000 0 0 0 7723 25 7901 20452;20453 32093;32094;32095;32096 32096 4 LESEGSPETLTNLR MELRAKEEERLNKLRLESEGSPETLTNLRK RLESEGSPETLTNLRKGYLFMYNLVQFLGF R L E L R K 0 1 1 0 0 0 3 1 0 0 3 0 0 0 1 2 2 0 0 0 0 0 14 0 1544.7682 Q9P035;H3BRL8;H3BPZ1;H3BS72;H3BMZ1 Q9P035 133 146 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 0.00020564 68.536 2 0.94992 0.96426 0.71696 2 Median 0.94992 0.96426 0.71696 2 0 Median NaN NaN NaN 0 0 Median 38568000 19674000 18895000 38568000 19674000 18895000 0 0 0 7724 2091 7902 20454;20455 32097;32098;32099 32097 3 LESEHPDQAQAILSR AIEAKLSDLQKEAEKLESEHPDQAQAILSR LESEHPDQAQAILSRLAEISDVWEEMKTTL K L E S R L 2 1 0 1 0 2 2 0 1 1 2 0 0 0 1 2 0 0 0 0 0 0 15 0 1692.8431 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 936 950 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.00010809 59.345 2 1.6205 1.8027 9.8826 2 Median 1.6205 1.8027 9.8826 2 0 Median NaN NaN NaN 0 0 Median 102420000 38769000 63653000 102420000 38769000 63653000 0 0 0 7725 415 7903 20456;20457 32100;32101 32101 2 LESENDEYER QANPNSEEIWLAAVKLESENDEYERARRLL LAAVKLESENDEYERARRLLAKARSSAPTA K L E E R A 0 1 1 1 0 0 4 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1282.5313 O94906 O94906 651 660 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 1.5325E-09 131.44 1 1.1129 1.1385 NaN 1 Median 1.1129 1.1385 NaN 1 0 Median NaN NaN NaN 0 0 Median 32792000 11952000 20840000 32792000 11952000 20840000 0 0 0 7726 1418 7904 20458 32102;32103 32102 2 LESGMQNMSIHTK EIATYRKLLEGEESRLESGMQNMSIHTKTT SRLESGMQNMSIHTKTTSGYAGGLSSAYGG R L E T K T 0 0 1 0 0 1 1 1 1 1 1 1 2 0 0 2 1 0 0 0 0 0 13 0 1474.6908 CON__P05787;P05787;Q969I0;Q7L4M3;CON__REFSEQ:XP_092267 CON__P05787 402 414 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 6.071E-05 89.43 4 1.7007 1.7172 8.0138 4 Median 1.7007 1.7172 8.0138 4 0 Median NaN NaN NaN 0 0 Median 62970000 22495000 40475000 62970000 22495000 40475000 0 0 0 + 7727 1156 7905 20459;20460;20461;20462 32104;32105;32106;32107;32108;32109 32104 865;866 6 LESLDALEPEEK NAEIHILKNKGRKRKLESLDALEPEEKAED KRKLESLDALEPEEKAEDCWELQISPELLA K L E E K A 1 0 0 1 0 0 4 0 0 0 3 1 0 0 1 1 0 0 0 0 0 0 12 0 1371.6769 Q14807;A0A024R632;B7Z9T5;Q14985;O60846 Q14807 560 571 KIF22;OBP-2;A-328A3.5 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 1.4895E-13 136.96 2 2 0.86377 0.82508 17.78 4 Median 0.86365 0.85978 13.776 2 0 Median 0.92224 0.74087 23.174 2 0 Median 60532000 31409000 29123000 51456000 26790000 24666000 9076300 4619300 4457000 7728 1745 7906 20463;20464;20465;20466 32110;32111;32112;32113;32114;32115;32116;32117;32118;32119 32110 10 LESLSAATTFEPLEPVK LLGSRGLDISHISQRLESLSAATTFEPLEP SLSAATTFEPLEPVKDTDIQGFLKNEKDNA R L E V K D 2 0 0 0 0 0 3 0 0 0 3 1 0 1 2 2 2 0 0 1 0 0 17 0 1830.9615 Q8N1F7;H3BVG0;H3BV11;H3BRI8;H3BM93;H3BNN5 Q8N1F7 78 94 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00032717 48.659 2 1.0948 0.87404 9.0164 2 Median NaN NaN NaN 0 0 Median 1.0948 0.87404 9.0164 2 0 Median 8653700 3861700 4792000 0 0 0 8653700 3861700 4792000 7729 1904 7907 20467;20468 32120;32121;32122;32123 32120 4 LESLSYQLSGLQK AASAAREELKEARMRLESLSYQLSGLQKQA MRLESLSYQLSGLQKQASAAEDRIRELEEA R L E Q K Q 0 0 0 0 0 2 1 1 0 0 4 1 0 0 0 3 0 0 1 0 0 0 13 0 1464.7824 Q03252;A0A0A7M1X5 Q03252 314 326 LMNB2 Lamin-B2 yes no 2 6.2579E-06 104.79 2 1 1.2902 1.327 7.1086 3 Median 1.264 1.3022 9.9349 2 0 Median 1.6817 1.327 NaN 1 0 Median 46487000 20174000 26314000 43261000 18634000 24627000 3226200 1539500 1686700 7730 1682 7908 20469;20470;20471 32124;32125;32126;32127;32128;32129 32124 6 LESNNYNTYR LASKCVTDECFFFERLESNNYNTYRSRKYT FFFERLESNNYNTYRSRKYTSWYVALKRTG R L E Y R S 0 1 3 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 2 0 0 0 10 0 1272.5735 D9ZGF5;A0A087WUF6;P09038 D9ZGF5 107 116 FGF2 Fibroblast growth factor;Fibroblast growth factor 2 yes no 2 2.8483E-09 125.82 1 1 0.68192 0.6355 65.474 2 Median 1.007 1.0097 NaN 1 0 Median 0.46177 0.39999 NaN 1 0 Median 21357000 10304000 11053000 17909000 7988600 9920500 3448200 2315400 1132700 7731 411 7909 20472;20473 32130;32131 32130 2 LESPSFTGTGDTEIAHATEDLENNGSK SPADLTEGKPTDPSKLESPSFTGTGDTEIA EIAHATEDLENNGSKKDGVCGPPPSKKMKL K L E S K K 2 0 2 2 0 0 4 3 1 1 2 1 0 1 1 3 4 0 0 0 0 0 27 0 2819.2733 Q08J23 Q08J23 471 497 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 1.2545E-10 56.468 1 2 1.5947 1.7612 45.015 3 Plateau 1.5947 1.7612 NaN 1 0 Median 1.0052 0.81124 6.8431 2 0 Median 57445000 24883000 32562000 44437000 19140000 25297000 13008000 5742900 7265100 7732 1694 7910 20474;20475;20476 32132;32133;32134;32135 32132 4 LESPTVSTLTPSSPGK ISPAALKKTLLDRVKLESPTVSTLTPSSPG ESPTVSTLTPSSPGKLLTRSLALGGKKD__ K L E G K L 0 0 0 0 0 0 1 1 0 0 2 1 0 0 3 4 3 0 0 1 0 0 16 0 1599.8356 B3KMB7;A0A087WTV6;A0A024R3Q9;Q4W8W1;A0A087WZR9;A0A0S2Z5U6;Q96C36;Q8NCZ0 B3KMB7 184 199 PYCR2;P5CR2;DKFZp434J218 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 2 yes no 2 2.3115E-05 85.845 2 2 0.63341 0.57909 36.31 4 Median 0.77259 0.77203 0.97372 2 0 Median 0.50997 0.4137 7.8699 2 0 Median 25553000 16206000 9347500 21461000 13792000 7669400 4092000 2414000 1678100 7733 137 7911 20477;20478;20479;20480 32136;32137;32138;32139;32140;32141 32138 6 LESTLNYGMER SEDGTVRIWHSSTYRLESTLNYGMERVWCV STYRLESTLNYGMERVWCVASLRGSNNVAL R L E E R V 0 1 1 0 0 0 2 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 11 0 1311.6129 P35606 P35606 263 273 COPB2 Coatomer subunit beta yes yes 2 0.0037496 56.548 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9754000 0 9754000 9754000 0 9754000 0 0 0 7734 1545 7912 20481 32142 32142 1302 1 LESVNAELK KKKEKTECLQKESEKLESVNAELKAQIEEL QKESEKLESVNAELKAQIEELKNEKQHLIY K L E L K A 1 0 1 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1001.5393 A0A0A0MRJ2;Q5VTZ4;P18847;Q59GS7 A0A0A0MRJ2 93 101 ATF3 Cyclic AMP-dependent transcription factor ATF-3 yes no 2 0.0015501 83.948 2 0.60847 0.665 NaN 1 Median 0.60847 0.665 NaN 1 0 Median NaN NaN NaN 0 0 Median 51159000 27957000 23202000 51159000 27957000 23202000 0 0 0 7735 466 7913 20482;20483 32143;32144 32143 2 LETAVNLAWTAGNSNTR GTEFGGSIYQKVNKKLETAVNLAWTAGNSN TAVNLAWTAGNSNTRFGIAAKYQIDPDACF K L E T R F 3 1 3 0 0 0 1 1 0 0 2 0 0 0 0 1 3 1 0 1 0 0 17 0 1816.9068 A0A1L1UHR1;P21796;B3KTS5 A0A1L1UHR1 202 218 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 4.5203E-18 131.32 3 1 1.3521 1.3753 7.8639 3 Median 1.3206 1.3479 2.8407 2 0 Median 1.7779 1.5376 NaN 1 0 Median 50065000 22274000 27791000 48433000 21732000 26701000 1631900 541870 1090000 7736 639 7914 20484;20485;20486;20487 32145;32146;32147;32148;32149;32150;32151;32152 32150 8 LETDSRPVSR AKFWKICPMEHILVRLETDSRPVSRRLVSL HILVRLETDSRPVSRRLVSLIFNSFLPVNQ R L E S R R 0 2 0 1 0 0 1 0 0 0 1 0 0 0 1 2 1 0 0 1 0 0 10 1 1158.5993 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 507 516 NCAPG2 Condensin-2 complex subunit G2 yes no 2;3 0.0059737 76.064 2 0.97487 1.0546 3.0495 2 Median 0.97487 1.0546 3.0495 2 0 Median NaN NaN NaN 0 0 Median 43867000 21460000 22407000 43867000 21460000 22407000 0 0 0 7737 1887 7915 20488;20489 32153;32154;32155 32153 3 LETHMTPEMFR PGFCFHLCSRARFERLETHMTPEMFRTPLH RFERLETHMTPEMFRTPLHEIALSIKLLRL R L E F R T 0 1 0 0 0 0 2 0 1 0 1 0 2 1 1 0 2 0 0 0 0 0 11 0 1390.6373 Q08211;B3KU66 Q08211 785 795 DHX9 ATP-dependent RNA helicase A yes no 2;3 0.00011855 89.805 4 3.1788 3.51 12.957 4 Median 3.1788 3.51 12.957 4 0 Median NaN NaN NaN 0 0 Median 159430000 37588000 121840000 159430000 37588000 121840000 0 0 0 7738 1691 7916 20490;20491;20492;20493 32156;32157;32158;32159;32160 32160 1512;1513 4 LETLGSASTSTPGR RDLEMSKKVRRSYSRLETLGSASTSTPGRR RLETLGSASTSTPGRRSCFGFEGLLGAEDL R L E G R R 1 1 0 0 0 0 1 2 0 0 2 0 0 0 1 3 3 0 0 0 0 0 14 0 1375.6943 A0A024R5D6;B5MBX0;Q96FF9;B3KSI5 A0A024R5D6 149 162 CDCA5 Sororin yes no 2 7.4152E-05 90.653 2 2 0.61562 0.5316 3.9118 2 Median NaN NaN NaN 0 0 Median 0.61562 0.5316 3.9118 2 0 Median 4272100 2629600 1642500 0 0 0 4272100 2629600 1642500 7739 178 7917 20494;20495;20496;20497 32161;32162;32163;32164 32164 4 LETLLQPR GAALGPEAGEEVLPRLETLLQPRKRSRSTC GEEVLPRLETLLQPRKRSRSTCGDSEVEEE R L E P R K 0 1 0 0 0 1 1 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 8 0 968.56548 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4DZ41;B7Z926;Q9Y4Q3;B4DZC2 A0A024R4W4 791 798 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.0021172 102.72 2 1 1.203 1.2599 48.126 3 Median 1.0978 1.1187 16.811 2 0 Median 3.0279 2.5091 NaN 1 0 Median 36261000 15485000 20775000 28392000 13191000 15201000 7868200 2294100 5574100 7740 162 7918 20498;20499;20500 32165;32166;32167;32168 32165 4 LETLVR TLQEKMAATSKEVARLETLVRKAGEQQETA AATSKEVARLETLVRKAGEQQETASRELVK R L E V R K 0 1 0 0 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 6 0 729.43849 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 919 924 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.04031 107.55 1 0.75705 0.77477 NaN 1 Median 0.75705 0.77477 NaN 1 0 Median NaN NaN NaN 0 0 Median 26272000 14486000 11786000 26272000 14486000 11786000 0 0 0 7741 186;1747 7919 20501 32169 32169 1 LETNPDIK QQKLDRQKELEKKRKLETNPDIKPSNVEPM ELEKKRKLETNPDIKPSNVEPMEKEFGLCK K L E I K P 0 0 1 1 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 8 0 928.48656 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5;C9JYH9 A0A024R2Z6 80 87 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.025116 65.252 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7742 125 7920 20502;20503;20504 32170;32171;32172 32171 3 LETNPDIKPSNVEPMEK QQKLDRQKELEKKRKLETNPDIKPSNVEPM TNPDIKPSNVEPMEKEFGLCKTENKAKSGK K L E E K E 0 0 2 1 0 0 3 0 0 1 1 2 1 0 3 1 1 0 0 1 0 0 17 1 1939.9561 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5;C9JYH9 A0A024R2Z6 80 96 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2;3 1.6929E-09 100.77 3 1 1.0022 1.163 29.91 3 Median 1.0859 1.2709 12.542 2 0 Median 0.90816 0.77487 NaN 1 0 Median 177300000 80319000 96983000 172350000 77799000 94551000 4952200 2520000 2432200 7743 125 7921 20505;20506;20507;20508 32173;32174;32175;32176;32177;32178 32176 109 6 LETQVWEAHNPLTDK DLLKEGEEDGRDQSRLETQVWEAHNPLTDK LETQVWEAHNPLTDKQIDQFLVVARSVGTF R L E D K Q 1 0 1 1 0 1 2 0 1 0 2 1 0 0 1 0 2 1 0 1 0 0 15 0 1779.8792 E7ESY4;Q13330;A0A024R6P5;Q86TR6 E7ESY4 194 208 MTA1 Metastasis-associated protein MTA1 yes no 3 0.0063796 30.956 2 1.7177 1.3578 0.61953 2 Median NaN NaN NaN 0 0 Median 1.7177 1.3578 0.61953 2 0 Median 8228600 3173000 5055600 0 0 0 8228600 3173000 5055600 7744 1223 7922 20509;20510 32179;32180 32179 2 LETSEFFELTSEEK AAFEDNEVQDEFLEKLETSEFFELTSEEKL KLETSEFFELTSEEKLQILTALCHRILMTY K L E E K L 0 0 0 0 0 0 5 0 0 0 2 1 0 2 0 2 2 0 0 0 0 0 14 0 1687.7829 Q9UIG0 Q9UIG0 732 745 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 4.2881E-83 204 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 135850000 0 135850000 59397000 0 59397000 76451000 0 76451000 7745 2103 7923 20511;20512;20513 32181;32182;32183 32181 3 LETYENAR ECCPTSVELWLALARLETYENARKVLNKAR LWLALARLETYENARKVLNKARENIPTDRH R L E A R K 1 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 8 0 994.47197 O94906 O94906 443 450 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0011347 111.82 1 0.59099 0.61778 NaN 1 Median 0.59099 0.61778 NaN 1 0 Median NaN NaN NaN 0 0 Median 13147000 7549200 5597600 13147000 7549200 5597600 0 0 0 7746 1418 7924 20514 32184 32184 1 LEVAEAEEEETSIK KSRKLPHSKAKTRSRLEVAEAEEEETSIKA RLEVAEAEEEETSIKAARSELLLAEEPGFL R L E I K A 2 0 0 0 0 0 6 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 14 0 1575.7516 B0UZZ8;O15213;B4DNI0;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 132 145 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 7.3363E-47 184.55 3 2 1.0583 0.98386 2.1676 4 Median 0.89169 0.98177 0.59383 2 0 Median 1.2498 1.003 3.0244 2 0 Median 120830000 58923000 61905000 100590000 49768000 50826000 20234000 9154900 11079000 7747 809 7925 20515;20516;20517;20518;20519 32185;32186;32187;32188;32189;32190;32191;32192;32193;32194 32185 10 LEVAPISDIIAIK ASAFGKNLLPRVAAKLEVAPISDIIAIKSP AKLEVAPISDIIAIKSPDTFVRTIYAGNAL K L E I K S 2 0 0 1 0 0 1 0 0 4 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1380.8228 A0A0S2Z3L0;P13804;A0A0S2Z3M4;H0YL12;H0YKF0;H0YLU7;H0YK49;H0YNX6 A0A0S2Z3L0 127 139 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 8.5625E-09 107.06 2 4.1274 4.6534 NaN 1 Median 4.1274 4.6534 NaN 1 0 Median NaN NaN NaN 0 0 Median 104000000 10572000 93430000 104000000 10572000 93430000 0 0 0 7748 553 7926 20520;20521 32195;32196 32195 2 LEVDEDFEEDNAAK RWETNRMLTSGVVHRLEVDEDFEEDNAAKV RLEVDEDFEEDNAAKVHLMVHNLVPPFLDG R L E A K V 2 0 1 3 0 0 4 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 14 0 1622.6948 A8K6G9;Q92620;B4DM30;B4DET0 A8K6G9 391 404 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.00022159 68.536 2 1.0126 1.0161 NaN 1 Median 1.0126 1.0161 NaN 1 0 Median NaN NaN NaN 0 0 Median 6910100 3447000 3463100 6910100 3447000 3463100 0 0 0 7749 760 7927 20522;20523 32197;32198;32199 32199 3 LEVDIPLVK NFMQAFLNVLDQCPKLEVDIPLVKSYLAQF LDQCPKLEVDIPLVKSYLAQFAARAIISEL K L E V K S 0 0 0 1 0 0 1 0 0 1 2 1 0 0 1 0 0 0 0 2 0 0 9 0 1024.6168 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89;E9PKF8;H0YE22 D3DQV9 632 640 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0070864 62.546 1 2 1.9894 1.9641 27.443 3 Plateau 1.9894 1.9641 NaN 1 0 Median 1.4836 1.2411 10.086 2 0 Median 23103000 7709400 15393000 19399000 6309000 13090000 3703500 1400400 2303100 7750 1054 7928 20524;20525;20526 32200;32201;32202;32203 32201 4 LEVDVIQER ALQKHVESMRTAVEKLEVDVIQERSRNTVL RTAVEKLEVDVIQERSRNTVLQQHLETLRQ K L E E R S 0 1 0 1 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1099.5873 B4DMG1;Q9NP66;H0YKL0 B4DMG1 154 162 HMG20A High mobility group protein 20A yes no 2 0.00052528 98.033 2 2 0.85594 0.83702 5.1755 4 Median 0.78516 0.83702 0.35664 2 0 Median 0.94791 0.80191 7.866 2 0 Median 84289000 46338000 37951000 77885000 42992000 34893000 6403700 3345700 3058000 7751 1005 7929 20527;20528;20529;20530 32204;32205;32206;32207;32208;32209 32204 6 LEVEANNAFDQYR PPLEDGAMPSARLRKLEVEANNAFDQYRDL RKLEVEANNAFDQYRDLYFEGGVSSVYLWD K L E Y R D 2 1 2 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 13 0 1567.7267 B1AK87;B1AK85;B2R7T8;B1AK88;B4DWA6;P47756 B1AK87 84 96 CAPZB F-actin-capping protein subunit beta yes no 2 2.3429E-05 108.7 2 2 1.7319 1.682 16.861 4 Median 1.4121 1.4908 4.6314 2 0 Median 2.246 1.9595 9.1656 2 0 Median 56288000 25551000 30737000 52892000 24263000 28628000 3396100 1287700 2108400 7752 814 7930 20531;20532;20533;20534 32210;32211;32212;32213;32214;32215 32213 6 LEVFTTPK DVHPKWIPGAADDSKLEVFTTPKKCAVPVE GAADDSKLEVFTTPKKCAVPVETEWLKSKD K L E P K K 0 0 0 0 0 0 1 0 0 0 1 1 0 1 1 0 2 0 0 1 0 0 8 0 933.51713 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1252 1259 AHCTF1 Protein ELYS yes no 2 0.0091076 75.738 1 1.6676 1.7918 NaN 1 Median 1.6676 1.7918 NaN 1 0 Median NaN NaN NaN 0 0 Median 39756000 15636000 24120000 39756000 15636000 24120000 0 0 0 7753 1945 7931 20535 32216 32216 1 LEVGPR GWKFNHWELKGVPIRLEVGPRDMKSCQFVA WELKGVPIRLEVGPRDMKSCQFVAVRRDTG R L E P R D 0 1 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 6 0 669.38097 P07814;B4DP50 P07814 1367 1372 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.049788 74.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7754 1454 7932 20536 32217 32217 1 LEVKPHALELPDK HDSWRQKRDKVRLRRLEVKPHALELPDKHS RRLEVKPHALELPDKHSLAFVVRIERIDGV R L E D K H 1 0 0 1 0 0 2 0 1 0 3 2 0 0 2 0 0 0 0 1 0 0 13 1 1487.8348 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 81 93 RPL7L1 60S ribosomal protein L7-like 1 yes no 3 0.00046235 59.607 1 1.1245 0.97011 NaN 1 Median NaN NaN NaN 0 0 Median 1.1245 0.97011 NaN 1 0 Median 5225900 2597900 2628100 0 0 0 5225900 2597900 2628100 7755 378 7933 20537 32218 32218 1 LEVNLQAMK ELEDELQATEDAKLRLEVNLQAMKAQFERD EDAKLRLEVNLQAMKAQFERDLQGRDEQSE R L E M K A 1 0 1 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 1044.5638 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1558 1566 MYH9;FLJ00279 Myosin-9 yes no 2 0.00073205 91.9 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7756 81 7934 20538 32219 32219 62 1 LEVQAEEERK VATERQKRRQEIEQKLEVQAEEERKQVENE EIEQKLEVQAEEERKQVENERRELFEERRA K L E R K Q 1 1 0 0 0 1 4 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1229.6252 Q9H307;A8K964 Q9H307 177 186 PNN Pinin yes no 2;3 0.0003158 82.645 4 1.2747 1.4661 10.858 4 Median 1.2747 1.4661 10.858 4 0 Median NaN NaN NaN 0 0 Median 104050000 42941000 61112000 104050000 42941000 61112000 0 0 0 7757 2028 7935 20539;20540;20541;20542 32220;32221;32222;32223;32224;32225 32221 6 LEVQATDREENK SKKKAVQRLEEQLMKLEVQATDREENKQIA LMKLEVQATDREENKQIALGTSKLNYLDPR K L E N K Q 1 1 1 1 0 1 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 1 1430.7001 P11387;B9EG90;Q9BVT2 P11387 701 712 TOP1 DNA topoisomerase 1 yes no 2;3 1.1488E-120 273.8 4 4 1.1613 1.238 6.4531 8 Median 1.0412 1.2497 4.6798 4 0 Median 1.3355 1.207 7.8563 4 0 Median 2839000000 1356800000 1482200000 2349300000 1148600000 1200800000 489640000 208210000 281430000 7758 1470 7936 20543;20544;20545;20546;20547;20548;20549;20550 32226;32227;32228;32229;32230;32231;32232;32233;32234;32235;32236;32237;32238;32239;32240 32231 15 LEVSELATVK NEFEKWQEGLKDDEKLEVSELATVKRPQER KDDEKLEVSELATVKRPQERSYMLQRWQED K L E V K R 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1087.6125 A4LAA3;P46100;B4DHH8 A4LAA3 1651 1660 ATRX Transcriptional regulator ATRX yes no 2 0.0054754 60.102 1 0.60336 0.59396 NaN 1 Median 0.60336 0.59396 NaN 1 0 Median NaN NaN NaN 0 0 Median 24075000 16120000 7955700 24075000 16120000 7955700 0 0 0 7759 672 7937 20551 32241 32241 1 LEVSMVK KRSSRANTVTPAVGRLEVSMVKPTPGLTPR TVTPAVGRLEVSMVKPTPGLTPRFDSRVFK R L E V K P 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 2 0 0 7 0 804.44153 Q53HL2;A8K7A2;B4DXT3 Q53HL2 177 183 CDCA8 Borealin yes no 2 0.020103 58.981 1 0.9175 1.0133 NaN 1 Median 0.9175 1.0133 NaN 1 0 Median NaN NaN NaN 0 0 Median 44449000 22554000 21896000 44449000 22554000 21896000 0 0 0 7760 1789 7938 20552 32242;32243 32243 1654 2 LEVSMVKPTPGLTPR KRSSRANTVTPAVGRLEVSMVKPTPGLTPR LEVSMVKPTPGLTPRFDSRVFKTPGLRTPA R L E P R F 0 1 0 0 0 0 1 1 0 0 2 1 1 0 3 1 2 0 0 2 0 0 15 1 1623.9018 Q53HL2;A8K7A2;B4DXT3 Q53HL2 177 191 CDCA8 Borealin yes no 3 1.9306E-06 94.728 4 6 1.258 1.4912 26.953 10 Median 1.2766 1.5092 2.7864 4 0 Median 1.1051 0.94208 26.745 6 0 Median 355950000 157160000 198800000 291930000 128850000 163080000 64025000 28313000 35713000 7761 1789 7939;7940 20553;20554;20555;20556;20557;20558;20559;20560;20561;20562 32244;32245;32246;32247;32248;32249;32250;32251;32252;32253;32254;32255;32256;32257 32250 1654 14 LEVSSSCGPQCHK STLNLAKPDFGAEAKLEVSSSCGPQCHKGT AKLEVSSSCGPQCHKGTPLPTYEEAKQYLS K L E H K G 0 0 0 0 2 1 1 1 1 0 1 1 0 0 1 3 0 0 0 1 0 0 13 0 1487.6497 B3KQQ9;O95084;E9PRR2 B3KQQ9 59 71 PRSS23 Serine protease 23 yes no 2 0.017292 49.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2140300 2140300 0 2140300 2140300 0 0 0 0 7762 929 7941 20563 32258 32258 1 LEWLSLLSDAEK DWFPLQGGQGQVHLRLEWLSLLSDAEKLEQ HLRLEWLSLLSDAEKLEQVLQWNWGVSSRP R L E E K L 1 0 0 1 0 0 2 0 0 0 4 1 0 0 0 2 0 1 0 0 0 0 12 0 1402.7344 B3KY56;B3KMV5;A0A024RB17;A0A024RB16;Q9BSJ8 B3KY56 400 411 FAM62A;ESYT1 Extended synaptotagmin-1 yes no 2 0.00020433 91.855 3 1.2327 1.346 34.198 2 Median 1.2327 1.346 34.198 2 0 Median NaN NaN NaN 0 0 Median 6425400 2257900 4167500 6425400 2257900 4167500 0 0 0 7763 320 7942 20564;20565;20566 32259;32260;32261;32262;32263 32260 5 LFALVLTPTR FALPILNALLETPQRLFALVLTPTRELAFQ ETPQRLFALVLTPTRELAFQISEQFEALGS R L F T R E 1 1 0 0 0 0 0 0 0 0 3 0 0 1 1 0 2 0 0 1 0 0 10 0 1129.6859 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;B4DYP6 Q53GJ1 86 95 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 2.7092E-09 126.41 2 2 1.1117 1.1068 10.889 4 Median 1.0396 1.2032 0.39507 2 0 Median 1.2144 0.99893 3.0866 2 0 Median 230170000 109780000 120390000 209700000 101130000 108580000 20466000 8650500 11816000 7764 313 7943 20567;20568;20569;20570 32264;32265;32266;32267;32268;32269;32270;32271;32272 32267 9 LFCLTLHR AGKDLPEGAVKGLCKLFCLTLHRYRDAASR AVKGLCKLFCLTLHRYRDAASRRALQAAIQ K L F H R Y 0 1 0 0 1 0 0 0 1 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 1058.5695 E1NZA1;Q92616;B4DM32 E1NZA1 53 60 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.023388 41.448 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3025600 0 3025600 3025600 0 3025600 0 0 0 7765 1205 7944 20571 32273 32273 1 LFCVGFTK EAHVDVKTTDGYLLRLFCVGFTKKRNNQIR TDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ R L F T K K 0 0 0 0 1 0 0 1 0 0 1 1 0 2 0 0 1 0 0 1 0 0 8 0 970.49462 Q6NXR8;A8K4W0;P61247;D6RG13;B7Z3M5;H0Y8L7;E9PFI5;D6RAT0;D6RB09;D6RAS7;H0Y9Y4;D6R9B6 Q6NXR8 137 144 RPS3A 40S ribosomal protein S3a yes no 2 0.0058868 89.046 2 2 0.83222 0.78961 19.763 4 Median 0.82262 0.93629 2.262 2 0 Median 0.8341 0.66588 2.2672 2 0 Median 355280000 198600000 156680000 319190000 179200000 139990000 36084000 19394000 16690000 7766 742 7945 20572;20573;20574;20575 32274;32275;32276;32277;32278 32276 5 LFDFVNAK TQYTFSSIEREEYGKLFDFVNAKKLNIKNR EREEYGKLFDFVNAKKLNIKNRGLKEGMNP K L F A K K 1 0 1 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 952.50182 A0A024R4Z6;Q08945;A0A0U1RRK2 A0A024R4Z6 414 421 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0031812 97.602 2 0.91876 0.78593 3.1639 2 Median NaN NaN NaN 0 0 Median 0.91876 0.78593 3.1639 2 0 Median 170690000 88517000 82176000 0 0 0 170690000 88517000 82176000 7767 167 7946 20576;20577 32279;32280;32281;32282 32280 4 LFDHPESPTPNPTEPLFLAQAEVYK VVSGKVYQWDDPDPRLFDHPESPTPNPTEP NPTEPLFLAQAEVYKELRLRGYDYGPHFQG R L F Y K E 2 0 1 1 0 1 3 0 1 0 3 1 0 2 5 1 2 0 1 1 0 0 25 0 2839.4069 A0A0U1RQF0;P49327 A0A0U1RQF0 968 992 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 9.7879E-13 72.805 2 2 1.0759 1.0136 46.27 4 Median 1.4204 1.5194 6.3537 2 0 Median 0.844 0.6844 4.6525 2 0 Median 88740000 34989000 53750000 69595000 25152000 44443000 19145000 9837500 9307600 7768 587 7947 20578;20579;20580;20581 32283;32284;32285;32286;32287;32288;32289;32290 32284 8 LFDIFSQQVATVIQSR FAHREDGPGIPADIKLFDIFSQQVATVIQS FDIFSQQVATVIQSRQDMPSEDVVSLQVSL K L F S R Q 1 1 0 1 0 3 0 0 0 2 1 0 0 2 0 2 1 0 0 2 0 0 16 0 1850.989 Q96QK1;Q5HYM2;Q53FR4 Q96QK1 324 339 VPS35;DKFZp686O2462 Vacuolar protein sorting-associated protein 35 yes no 2 0.0068296 51.726 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2767000 0 2767000 2767000 0 2767000 0 0 0 7769 1985 7948 20582 32291 32291 1 LFDIRPIWSR CTNPVDRKVEEELRKLFDIRPIWSRNAVKA EELRKLFDIRPIWSRNAVKANISVHPDKLK K L F S R N 0 2 0 1 0 0 0 0 0 2 1 0 0 1 1 1 0 1 0 0 0 0 10 1 1301.7244 Q9Y5Q8;Q5T7U0;Q5T7U4;B7Z1V3;H7BY84 Q9Y5Q8 257 266 GTF3C5 General transcription factor 3C polypeptide 5 yes no 3 0.031614 33.875 1 1.1201 1.1002 NaN 1 Median 1.1201 1.1002 NaN 1 0 Median NaN NaN NaN 0 0 Median 4491000 2250000 2241000 4491000 2250000 2241000 0 0 0 7770 2149 7949 20583 32292 32292 1 LFDLLNK GLEVYVTFFEIYNGKLFDLLNKKAKLRVLE FFEIYNGKLFDLLNKKAKLRVLEDGKQQVQ K L F N K K 0 0 1 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 861.496 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1 A8K3S3 409 415 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.010079 118.69 2 0.9372 1.0436 7.1562 2 Median 0.9372 1.0436 7.1562 2 0 Median NaN NaN NaN 0 0 Median 112950000 55705000 57240000 112950000 55705000 57240000 0 0 0 7771 626 7950 20584;20585 32293;32294;32295 32293 3 LFDQAFGLPR GPSWDPFRDWYPHSRLFDQAFGLPRLPEEW YPHSRLFDQAFGLPRLPEEWSQWLGGSSWP R L F P R L 1 1 0 1 0 1 0 1 0 0 2 0 0 2 1 0 0 0 0 0 0 0 10 0 1162.6135 V9HW43;P04792;F8WE04 V9HW43 28 37 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 1.0391E-09 133.55 6 2 1.3447 1.3575 21.84 5 Median 1.3457 1.6096 9.6629 3 0 Plateau 1.2094 1.0422 5.3816 2 0 Median 880310000 381800000 498510000 809980000 352070000 457910000 70334000 29732000 40603000 7772 1443 7951 20586;20587;20588;20589;20590;20591;20592;20593 32296;32297;32298;32299;32300;32301;32302;32303;32304;32305;32306;32307;32308;32309;32310;32311;32312;32313;32314 32296 19 LFDQPGDPLK IGIEPSLATYHHIIRLFDQPGDPLKRSSFI HHIIRLFDQPGDPLKRSSFIIYDIMNELMG R L F L K R 0 0 0 2 0 1 0 1 0 0 2 1 0 1 2 0 0 0 0 0 0 0 10 0 1128.5815 Q96EY7;B2RDU4 Q96EY7 378 387 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes no 2 0.048381 47.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2902600 0 2902600 2902600 0 2902600 0 0 0 7773 1963 7952 20594 32315 32315 1 LFDSICNNK LAEDEEMNRMHESMKLFDSICNNKWFTETS MHESMKLFDSICNNKWFTETSIILFLNKKD K L F N K W 0 0 2 1 1 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1109.5175 P08754;A0A142CHG9;P63096;P04899;B3KP24;B3KX51;Q96C71;Q6AWC5;Q6LCB5 P08754 249 257 GNAI3;GNAI1;GNAI2;DKFZp686O0962;WUGSC:H_LUCA15.1 Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-2 yes no 2 0.031367 45.489 1 1.4584 1.4753 NaN 1 Median 1.4584 1.4753 NaN 1 0 Median NaN NaN NaN 0 0 Median 6825800 3005700 3820100 6825800 3005700 3820100 0 0 0 7774 1458 7953 20595 32316 32316 1 LFDVCGSQDFESDLDR ELKRKEEQLSSYEDKLFDVCGSQDFESDLD FDVCGSQDFESDLDRLKEEIEKSSKQRAML K L F D R L 0 1 0 4 1 1 1 1 0 0 2 0 0 2 0 2 0 0 0 1 0 0 16 0 1901.8102 Q92878;E7EN38;Q32P42 Q92878 629 644 RAD50 DNA repair protein RAD50 yes no 2 0.013513 44.299 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7775 1953 7954 20596 32317 32317 1 LFEAEAQDLFR GSFWAQPLQNTDNRRLFEAEAQDLFRDIQS DNRRLFEAEAQDLFRDIQSLPQKAAVRKLN R L F F R D 2 1 0 1 0 1 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 11 0 1337.6616 A8K9B9;A0A024R9N6;Q9H223 A8K9B9 273 283 EHD4 EH domain-containing protein 4 yes no 2 0.0017197 65.347 1 1.6369 1.6243 NaN 1 Median 1.6369 1.6243 NaN 1 0 Median NaN NaN NaN 0 0 Median 8333400 3253800 5079600 8333400 3253800 5079600 0 0 0 7776 284 7955 20597 32318;32319 32318 2 LFEDDDSNEK DEDADGKEVEDADEKLFEDDDSNEKLFDEE DADEKLFEDDDSNEKLFDEEEDSSEKLFDD K L F E K L 0 0 1 3 0 0 2 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1210.499 O43719;B4DRS4 O43719 696 705 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.016555 56.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3623400 0 3623400 3623400 0 3623400 0 0 0 7777 1388 7956 20598 32320 32320 1 LFEDMGLFEAFK IGRKCGRILSQVSYRLFEDMGLFEAFKIPI SYRLFEDMGLFEAFKIPIREFMNYFHALEI R L F F K I 1 0 0 1 0 0 2 1 0 0 2 1 1 3 0 0 0 0 0 0 0 0 12 0 1445.6901 Q14432 Q14432 718 729 PDE3A cGMP-inhibited 3,5-cyclic phosphodiesterase A yes yes 2 0.00058415 73.067 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2126400 0 2126400 2126400 0 2126400 0 0 0 7778 1732 7957 20599 32321 32321 1566 1 LFEEPEDPSNR LCDMRASALCDRHSKLFEEPEDPSNRSFFS RHSKLFEEPEDPSNRSFFSEIISSISDVKF K L F N R S 0 1 1 1 0 0 3 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 11 0 1331.5994 Q56VW8;A0A140VJT0;P63151;E5RFR9;Q59GC6;Q6ZP32;Q9Y2T4 Q56VW8 268 278 PPP2R2A;PPP2R2C Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform yes no 2 0.00045925 76.827 2 1.8207 1.8896 NaN 1 Median 1.8207 1.8896 NaN 1 0 Median NaN NaN NaN 0 0 Median 13633000 4486000 9146800 13633000 4486000 9146800 0 0 0 7779 609 7958 20600;20601 32322;32323;32324;32325 32323 4 LFEESDDKEDEDADGK EAADKKAEEGDADEKLFEESDDKEDEDADG FEESDDKEDEDADGKEVEDADEKLFEDDDS K L F G K E 1 0 0 5 0 0 4 1 0 0 1 2 0 1 0 1 0 0 0 0 0 0 16 1 1840.7487 O43719 O43719 672 687 HTATSF1 HIV Tat-specific factor 1 yes yes 2;3 0.00011599 64.121 2 1.7383 1.9865 NaN 1 Median 1.7383 1.9865 NaN 1 0 Median NaN NaN NaN 0 0 Median 15266000 5277700 9988600 15266000 5277700 9988600 0 0 0 7780 1388 7959 20602;20603 32326;32327 32326 2 LFEFAGYDVLR VGHLRSTIIGESISRLFEFAGYDVLRLNHV SISRLFEFAGYDVLRLNHVGDWGTQFGMLI R L F L R L 1 1 0 1 0 0 1 1 0 0 2 0 0 2 0 0 0 0 1 1 0 0 11 0 1328.6765 P54136;B4DXW6 P54136 224 234 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.00019291 93.111 2 1 1.6867 1.6916 33.778 3 Median 1.7717 1.7851 7.6124 2 0 Median 1.1832 1.0019 NaN 1 0 Median 39886000 15692000 24194000 36940000 14171000 22769000 2946000 1521100 1424900 7781 1609 7960 20604;20605;20606 32328;32329;32330;32331;32332 32330 5 LFEGNALLR AARELLTLDEKDPRRLFEGNALLRRLVRIG EKDPRRLFEGNALLRRLVRIGVLDEGKMKL R L F L R R 1 1 1 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1031.5764 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 71 79 RPS9 40S ribosomal protein S9 yes no 2 2.156E-05 116.88 3 2 0.86269 0.87591 23.86 4 Median 0.90975 1.0775 3.0059 2 0 Median 0.82306 0.71412 2.5906 2 0 Median 2407400000 1271700000 1135800000 2262200000 1193100000 1069100000 145240000 78549000 66695000 7782 157 7961 20607;20608;20609;20610;20611 32333;32334;32335;32336;32337;32338;32339;32340;32341;32342;32343;32344;32345;32346;32347;32348 32339 16 LFEHYYQELK AGWEGGYPEIVKENKLFEHYYQELKIVPEG VKENKLFEHYYQELKIVPEGEWGQFMDALR K L F L K I 0 0 0 0 0 1 2 0 1 0 2 1 0 1 0 0 0 0 2 0 0 0 10 0 1368.6714 Q08J23;A0A140T9Y7 Q08J23 47 56 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 3 0.035872 23.376 1 1.3553 1.3777 NaN 1 Median 1.3553 1.3777 NaN 1 0 Median NaN NaN NaN 0 0 Median 12625000 5897300 6727500 12625000 5897300 6727500 0 0 0 7783 1694 7962 20612 32349 32349 1 LFEISDIVIK LKTIAANRKMPLPLKLFEISDIVIKDSNTD PLPLKLFEISDIVIKDSNTDVGAKNYRHLC K L F I K D 0 0 0 1 0 0 1 0 0 3 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1175.6802 B7ZB32;Q9BR63;A8K666;Q9NSD9 B7ZB32 375 384 FARSB Phenylalanine--tRNA ligase beta subunit yes no 2 0.015203 57.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2169300 0 2169300 2169300 0 2169300 0 0 0 7784 757 7963 20613 32350 32350 1 LFELEEQDLFR GSFWSQPLLVPDNRRLFELEEQDLFRDIQG DNRRLFELEEQDLFRDIQGLPRHAALRKLN R L F F R D 0 1 0 1 0 1 3 0 0 0 3 0 0 2 0 0 0 0 0 0 0 0 11 0 1437.714 A0A024R0S6;Q9NZN4;Q8NCJ3;B4DLA1;B3KUH4 A0A024R0S6 270 280 EHD2 EH domain-containing protein 2 yes no 2 0.029206 39.305 1 1.3183 1.3346 NaN 1 Median 1.3183 1.3346 NaN 1 0 Median NaN NaN NaN 0 0 Median 7664200 3640500 4023700 7664200 3640500 4023700 0 0 0 7785 57 7964 20614 32351 32351 1 LFELLEK PKQPNVQDFQFFPPRLFELLEKEILFYRKT DFQFFPPRLFELLEKEILFYRKTIGYKVPR R L F E K E 0 0 0 0 0 0 2 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 890.51132 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 781 787 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.022601 91.906 3 2 2.6332 3.0322 28.659 5 Median 2.6332 3.0322 14.802 3 0 Plateau 5.654 4.4775 5.0349 2 0 Median 315620000 83600000 232020000 283960000 78545000 205410000 31664000 5054800 26609000 7786 1391 7965 20615;20616;20617;20618;20619 32352;32353;32354;32355;32356;32357;32358;32359;32360;32361;32362;32363 32353 12 LFEMGFAEQLQEIIAR KLQSVEYVVFDEADRLFEMGFAEQLQEIIA FEMGFAEQLQEIIARLPGGHQTVLFSATLP R L F A R L 2 1 0 0 0 2 3 1 0 2 2 0 1 2 0 0 0 0 0 0 0 0 16 0 1893.9659 Q8TDD1;F8VRX4 Q8TDD1 252 267 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 4.9669E-06 86.911 2 1.3925 1.3843 NaN 1 Median 1.3925 1.3843 NaN 1 0 Median NaN NaN NaN 0 0 Median 9069300 4874800 4194500 9069300 4874800 4194500 0 0 0 7787 1933 7966 20620;20621 32364;32365;32366 32366 1770 3 LFEMVLGPAAYNVPLPK HFRESVEKTIPYSDKLFEMVLGPAAYNVPL EMVLGPAAYNVPLPKKSIQSGPLKISSVSE K L F P K K 2 0 1 0 0 0 1 1 0 0 3 1 1 1 3 0 0 0 1 2 0 0 17 0 1858.0063 Q16891;B9A067;B4DQY2;B4DT20;Q05DN3 Q16891 85 101 IMMT MICOS complex subunit MIC60 no no 2 1.4874E-10 112.15 2 1.2562 1.2871 8.8039 2 Median 1.2562 1.2871 8.8039 2 0 Median NaN NaN NaN 0 0 Median 43531000 19155000 24376000 43531000 19155000 24376000 0 0 0 7788 1774 7967 20622;20623 32367;32368;32369;32370;32371 32370 1645 5 LFFVDTGSK ERTSGGLLSEAPNEKLFFVDTGSKEKGLTK EAPNEKLFFVDTGSKEKGLTKKRTKVQKKS K L F S K E 0 0 0 1 0 0 0 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 9 0 1012.5229 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4DVK1;B4E013 Q7L4X7 82 90 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.010479 59.245 2 1.3303 1.0639 3.0411 2 Median NaN NaN NaN 0 0 Median 1.3303 1.0639 3.0411 2 0 Median 5523600 2450800 3072800 0 0 0 5523600 2450800 3072800 7789 1068 7968 20624;20625 32372;32373 32372 2 LFGALLER EDQEEIQEAVRTCSRLFGALLERGELFVGQ AVRTCSRLFGALLERGELFVGQLPSEEMVM R L F E R G 1 1 0 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 8 0 917.53345 Q9BVI4 Q9BVI4 56 63 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.001654 120.62 2 0.7639 0.80262 0.37334 2 Median 0.7639 0.80262 0.37334 2 0 Median NaN NaN NaN 0 0 Median 45838000 22612000 23226000 45838000 22612000 23226000 0 0 0 7790 2007 7969 20626;20627 32374;32375;32376 32376 3 LFGIESSSGTILWK FNLQKMMVMVTASGKLFGIESSSGTILWKQ KLFGIESSSGTILWKQYLPNVKPDSSFKLM K L F W K Q 0 0 0 0 0 0 1 2 0 2 2 1 0 1 0 3 1 1 0 0 0 0 14 0 1536.8188 Q8N766 Q8N766 545 558 EMC1 ER membrane protein complex subunit 1 yes yes 2 0.0080871 39.293 1 0.60458 0.60654 NaN 1 Median 0.60458 0.60654 NaN 1 0 Median NaN NaN NaN 0 0 Median 7545000 5202100 2342900 7545000 5202100 2342900 0 0 0 7791 1913 7970 20628 32377 32377 1 LFGLLVK AFSVGQQLVFSFNEKLFGLLVKDIEAMDPS LVFSFNEKLFGLLVKDIEAMDPSILKGEPA K L F V K D 0 0 0 0 0 0 0 1 0 0 3 1 0 1 0 0 0 0 0 1 0 0 7 0 788.51601 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;I3L0L3 I3L0N3 139 145 NSF Vesicle-fusing ATPase yes no 2 0.044589 68.033 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7792 1096 7971 20629;20630 32378;32379 32379 2 LFGNILDK VRECARSQGFPDTYRLFGNILDKHRQVGNA GFPDTYRLFGNILDKHRQVGNAVPPPLAKA R L F D K H 0 0 1 1 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 918.51747 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0;K7ENW7 A0A024R7E3 1627 1634 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.01158 69.598 2 0.60903 0.64789 5.4442 2 Median 0.60903 0.64789 5.4442 2 0 Median NaN NaN NaN 0 0 Median 78081000 49960000 28122000 78081000 49960000 28122000 0 0 0 7793 222 7972 20631;20632 32380;32381;32382;32383 32382 4 LFGSAANVVSAK QKYWCVTATRVAPERLFGSAANVVSAKRNR PERLFGSAANVVSAKRNRLAPAHVDEQVFL R L F A K R 3 0 1 0 0 0 0 1 0 0 1 1 0 1 0 2 0 0 0 2 0 0 12 0 1162.6346 A0A024RBU4;O96006 A0A024RBU4 621 632 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 2 0.023479 49.466 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7794 347 7973 20633 32384 32384 1 LFHEVVQAFR VERWKQAAKQRLTPKLFHEVVQAFRAAVAT RLTPKLFHEVVQAFRAAVATTRGDQESAEA K L F F R A 1 1 0 0 0 1 1 0 1 0 1 0 0 2 0 0 0 0 0 2 0 0 10 0 1244.6666 Q9Y3T9;B3KNC3;B4DM71 Q9Y3T9 169 178 NOC2L Nucleolar complex protein 2 homolog yes no 3 0.0011463 63.216 2 2 1.1053 1.0976 8.6304 3 Median 1.0913 1.0976 NaN 1 0 Median 1.2279 1.0505 11.669 2 0 Median 24742000 11887000 12854000 17360000 8717800 8642200 7382000 3169700 4212300 7795 2139 7974 20634;20635;20636;20637 32385;32386;32387;32388;32389 32385 5 LFHNTPGHR ITGRFLASCGDRAVRLFHNTPGHRAMVEEM GDRAVRLFHNTPGHRAMVEEMQGHLKRASN R L F H R A 0 1 1 0 0 0 0 1 2 0 1 0 0 1 1 0 1 0 0 0 0 0 9 0 1077.5468 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;B4DY59 E9PF19 362 370 TBL2 Transducin beta-like protein 2 yes no 3 0.0018786 56.729 1 0.90877 0.95713 NaN 1 Median 0.90877 0.95713 NaN 1 0 Median NaN NaN NaN 0 0 Median 4031200 2317500 1713600 4031200 2317500 1713600 0 0 0 7796 582 7975 20638 32390;32391;32392 32392 3 LFIFETFCR FFLVACLEDFIENARLFIFETFCRIHQCIS FIENARLFIFETFCRIHQCISINMLADKLN R L F C R I 0 1 0 0 1 0 1 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 9 0 1231.606 E5RGA2;B3KW56;Q6IAX5;B2R806;P60228;E5RHS5 E5RGA2 245 253 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.036636 50.878 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7797 857 7976 20639 32393 32393 1 LFIGGLNTETNEK ______________________________ GKLFIGGLNTETNEKALEAVFGKYGRIVEV K L F E K A 0 0 2 0 0 0 2 2 0 1 2 1 0 1 0 0 2 0 0 0 0 0 13 0 1434.7355 H0Y6E7;H3BT71;P38159;Q2VIN3;Q96E39;H3BR27;A0A1B0GUK8;H3BNC1 H0Y6E7 12 24 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 yes no 2 1.1371E-08 113.69 3 2 1.0325 1.0128 55.965 4 Median 1.3861 1.6194 0.45706 2 0 Median 0.75229 0.615 4.6391 2 0 Median 644880000 284020000 360860000 586260000 251470000 334790000 58626000 32548000 26077000 7798 1284 7977 20640;20641;20642;20643;20644 32394;32395;32396;32397;32398;32399;32400;32401;32402;32403;32404;32405 32404 12 LFIGGLNVQTSESGLR ______________________________ FIGGLNVQTSESGLRGHFEAFGTLTDCVVV K L F L R G 0 1 1 0 0 1 1 3 0 1 3 0 0 1 0 2 1 0 0 1 0 0 16 0 1689.905 Q13151 Q13151 9 24 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 9.2719E-69 199.43 2 2 0.84928 0.85012 36.515 4 Median 0.9993 1.1479 0.8856 2 0 Median 0.70572 0.61117 5.0796 2 0 Median 410800000 211480000 199330000 334060000 165150000 168910000 76740000 46325000 30415000 7799 1706 7978 20645;20646;20647;20648 32406;32407;32408;32409;32410;32411;32412;32413;32414 32409 9 LFIGGLPNYLNDDQVK VPGVVSTVVPDSAHKLFIGGLPNYLNDDQV FIGGLPNYLNDDQVKELLTSFGPLKAFNLV K L F V K E 0 0 2 2 0 1 0 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 16 0 1804.9359 K7ENG2;B5BU25;P26368 K7ENG2 97 112 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 7.0498E-05 81.92 2 1.1762 1.19 2.5629 2 Median 1.1762 1.19 2.5629 2 0 Median NaN NaN NaN 0 0 Median 29945000 13791000 16154000 29945000 13791000 16154000 0 0 0 7800 1074 7979 20649;20650 32415;32416;32417 32415 3 LFIGGLSFETTDDSLR GEEGHDPKEPEQLRKLFIGGLSFETTDDSL FIGGLSFETTDDSLREHFEKWGTLTDCVVM K L F L R E 0 1 0 2 0 0 1 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1769.8836 P51991;B4E3E6;B4DDB6;Q65ZQ3 P51991 37 52 HNRNPA3;HNRPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 yes no 2 5.2425E-12 114.82 1 1.37 1.4014 NaN 1 Median 1.37 1.4014 NaN 1 0 Median NaN NaN NaN 0 0 Median 35057000 15075000 19983000 35057000 15075000 19983000 0 0 0 7801 1598 7980 20651 32418;32419 32418 2 LFIGGLSFETTDESLR MSKSESPKEPEQLRKLFIGGLSFETTDESL FIGGLSFETTDESLRSHFEQWGTLTDCVVM K L F L R S 0 1 0 1 0 0 2 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1783.8992 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q0VAC0;Q6IPF2;F8VZ49;A0A024RC46;A0A024QZ98;Q32P51;F8VTQ5;B4DP35;F8W646;B4E0B5 F8W6I7 16 31 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 5.2425E-12 114.82 2 2 1.6325 3.0231 52.512 4 Linear 2.207 2.5552 1.75 2 0 Median 1.1962 1.0301 3.9222 2 0 Median 439970000 141510000 298460000 364430000 108090000 256340000 75545000 33422000 42123000 7802 317 7981 20652;20653;20654;20655 32420;32421;32422;32423;32424;32425;32426 32423 7 LFIGGLSFETTEESLR VPLERKKREKEQFRKLFIGGLSFETTEESL FIGGLSFETTEESLRNYYEQWGKLTDCVVM K L F L R N 0 1 0 0 0 0 3 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1797.9149 P22626;A0A087WUI2;I6L957 P22626 23 38 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 6.8097E-13 114.72 2 2 2.2683 2.537 51.941 3 Plateau 2.2873 2.5606 NaN 1 0 Median 1.2283 1.0457 6.9816 2 0 Median 225790000 50214000 175580000 176590000 27823000 148770000 49202000 22391000 26811000 7803 1508 7982 20656;20657;20658;20659 32427;32428;32429;32430;32431;32432;32433 32429 7 LFIGNLPR ______________________________ ______________________________ K L F P R E 0 1 1 0 0 0 0 1 0 1 2 0 0 1 1 0 0 0 0 0 0 0 8 0 928.54944 A8K9U0;Q9BWF3;E9PB51;Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5 A8K9U0 4 11 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.014565 62.714 1 0.9937 1.0214 NaN 1 Median 0.9937 1.0214 NaN 1 0 Median NaN NaN NaN 0 0 Median 25319000 11008000 14311000 25319000 11008000 14311000 0 0 0 7804 788 7983 20660 32434 32434 1 LFITGGITSSSTSK PVNKYGHEGTVLNNKLFITGGITSSSTSKQ KLFITGGITSSSTSKQVCVFDPSKEGTIEQ K L F S K Q 0 0 0 0 0 0 0 2 0 2 1 1 0 1 0 4 3 0 0 0 0 0 14 0 1397.7402 V9HWF1;Q96M94 V9HWF1 428 441 HEL-S-305;KLHL15 Kelch-like protein 15 yes no 2 0.010613 51.092 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7805 1978 7984 20661;20662 32435;32436 32435 2 LFLESSDANPVR FALRYFKDTSPVFQRLFLESSDANPVRYGR FQRLFLESSDANPVRYGRRRMKLRDLMEAA R L F V R Y 1 1 1 1 0 0 1 0 0 0 2 0 0 1 1 2 0 0 0 1 0 0 12 0 1346.683 Q9NU22;Q6ZVV6;Q5T795 Q9NU22 126 137 MDN1 Midasin yes no 2 0.010886 56.563 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2427800 0 2427800 2427800 0 2427800 0 0 0 7806 2071 7985 20663;20664;20665 32437;32438;32439 32437 3 LFLIDFGLAK KPDNFLMGIGRHCNKLFLIDFGLAKKYRDN RHCNKLFLIDFGLAKKYRDNRTRQHIPYRE K L F A K K 1 0 0 1 0 0 0 1 0 1 3 1 0 2 0 0 0 0 0 0 0 0 10 0 1135.6641 V9HW00;P48729;B4E1D9;Q05DL3;D6REM4;Q8N752 V9HW00 153 162 HEL-S-77p;CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 2 1.4912E-05 101.54 2 1.2969 1.3234 6.9307 2 Median 1.2969 1.3234 6.9307 2 0 Median NaN NaN NaN 0 0 Median 15356000 6813800 8542400 15356000 6813800 8542400 0 0 0 7807 1577 7986 20666;20667 32440;32441;32442;32443 32443 4 LFLLPHK GKTFDYKIPYTTVLRLFLLPHKDQRQMFFV IPYTTVLRLFLLPHKDQRQMFFVISLDPPI R L F H K D 0 0 0 0 0 0 0 0 1 0 3 1 0 1 1 0 0 0 0 0 0 0 7 0 866.53781 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 242 248 SSRP1 FACT complex subunit SSRP1 yes no 2 0.03153 66.994 2 1 0.69591 0.76668 3.7601 3 Median 0.68705 0.78981 4.7316 2 0 Median 0.95342 0.76668 NaN 1 0 Median 478080000 284550000 193530000 455530000 272780000 182750000 22551000 11765000 10786000 7808 167 7987 20668;20669;20670 32444;32445;32446;32447;32448;32449 32445 6 LFLLQQPLAPSGLTLK TFFTALLSLLVSGPRLFLLQQPLAPSGLTL FLLQQPLAPSGLTLKSEALRNWQATMEGGV R L F L K S 1 0 0 0 0 2 0 1 0 0 6 1 0 1 2 1 1 0 0 0 0 0 16 0 1738.0393 Q9UDT1;Q6NTF9 Q9UDT1 36 51 WUGSC:H_RG122E10.2a;RHBDD2 Rhomboid domain-containing protein 2 yes no 2 0.00060937 48.741 2 1.2958 1.3086 10.556 2 Median 1.2958 1.3086 10.556 2 0 Median NaN NaN NaN 0 0 Median 10049000 4604600 5444900 10049000 4604600 5444900 0 0 0 7809 1847 7988 20671;20672 32450;32451;32452 32451 3 LFLNETQTQEITEDIPVK YEAAKVFGLRSRKLKLFLNETQTQEITEDI NETQTQEITEDIPVKTLNMKTVYVSVLPTT K L F V K T 0 0 1 1 0 2 3 0 0 2 2 1 0 1 1 0 3 0 0 1 0 0 18 0 2117.0892 Q59G75;P41252;J3KR24;Q7Z355;Q6P0M4;B4DVX2;Q7L4K8;Q9P1N9 Q59G75 1244 1261 IARS;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 7.801E-41 162.93 2 2 1.2665 1.8159 51.347 4 Linear 1.7291 1.7293 2.5432 2 0 Median 0.88254 0.7123 5.9799 2 0 Median 64873000 26819000 38055000 48753000 18289000 30464000 16120000 8529600 7590900 7810 1561 7989 20673;20674;20675;20676 32453;32454;32455;32456;32457;32458;32459 32456 7 LFMLLLEK DPNGSRYLLGDMEGRLFMLLLEKEEQMDGT LGDMEGRLFMLLLEKEEQMDGTVTLKDLRV R L F E K E 0 0 0 0 0 0 1 0 0 0 4 1 1 1 0 0 0 0 0 0 0 0 8 0 1005.5933 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 280 287 DDB1 DNA damage-binding protein 1 yes no 2 0.0012012 92.47 4 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37056000 37056000 0 31937000 31937000 0 5119700 5119700 0 7811 1770 7990;7991 20677;20678;20679;20680;20681;20682;20683 32460;32461;32462;32463;32464;32465;32466;32467 32460 1637 8 LFMVLWLK GSDGAKIGNCPFSQRLFMVLWLKGVTFNVT NCPFSQRLFMVLWLKGVTFNVTTVDTKRRT R L F L K G 0 0 0 0 0 0 0 0 0 0 3 1 1 1 0 0 0 1 0 1 0 0 8 0 1048.6143 Q5SRT3;Q53FB0;O00299 Q5SRT3 30 37 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 0.0039906 73.039 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2233600 0 2233600 2233600 0 2233600 0 0 0 7812 1362 7992 20684;20685 32468;32469 32469 1029 2 LFNAIIHR GLRCDNFTSSWRDGRLFNAIIHRHKPLLID SSWRDGRLFNAIIHRHKPLLIDMNKVYRQT R L F H R H 1 1 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 0 8 0 982.57123 Q15149;E9PMV1;E9PKG0 Q15149 329 336 PLEC Plectin yes no 3 0.00089968 98.418 2 1.3813 1.4452 0.95769 2 Median 1.3813 1.4452 0.95769 2 0 Median NaN NaN NaN 0 0 Median 70648000 30811000 39836000 70648000 30811000 39836000 0 0 0 7813 1754 7993 20686;20687 32470;32471;32472;32473 32471 4 LFNDDNTIPFIIR ERTNIEPWVCANIIRLFNDDNTIPFIIRYR IRLFNDDNTIPFIIRYRKELINNLDADSLR R L F I R Y 0 1 2 2 0 0 0 0 0 3 1 0 0 2 1 0 1 0 0 0 0 0 13 0 1576.8249 B3KPM8;Q8N5C6 B3KPM8 235 247 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.00079839 60.434 2 1 1.1488 1.0835 68.24 2 Median 0.64215 0.66875 NaN 1 0 Median 2.055 1.7555 NaN 1 0 Median 9753100 4704100 5049000 5233200 3324800 1908500 4519900 1379400 3140500 7814 921 7994 20688;20689;20690 32474;32475;32476;32477 32474 4 LFNEVQEK QLMGLFNRIIRKVVKLFNEVQEKAIEEQMV IIRKVVKLFNEVQEKAIEEQMVAAKDVVME K L F E K A 0 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 1005.5131 Q9H0A0;A0A087WV29 Q9H0A0 905 912 NAT10 N-acetyltransferase 10 yes no 2 3.2006E-05 125.58 2 2 1.308 1.0914 5.9793 3 Median 0.84839 0.99911 NaN 1 0 Median 1.3203 1.1055 1.8149 2 0 Median 739010000 291090000 447920000 643540000 251530000 392020000 95468000 39565000 55903000 7815 2023 7995 20691;20692;20693;20694 32478;32479;32480;32481;32482 32478 5 LFNLSK VPRRLGPKRASRIRKLFNLSKEDDVRQYVV PKRASRIRKLFNLSKEDDVRQYVVRKPLNK K L F S K E 0 0 1 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 6 0 720.41703 Q96DV6;A2A3R6;P62753;D3DRJ5;A2A3R5 Q96DV6 144 149 RPS6 40S ribosomal protein S6 no no 2 0.035342 111.69 4 0.87054 1.0521 0.12898 2 Median 0.87054 1.0521 0.12898 2 0 Median NaN NaN NaN 0 0 Median 9841700000 5204100000 4637500000 9841700000 5204100000 4637500000 0 0 0 7816 649;648 7996 20695;20696;20697;20698 32483;32484;32485;32486;32487 32486 5 LFNWLSETLANAR QQQDTCNSGIADIHRLFNWLSETLANARHS HRLFNWLSETLANARHSDASLTDTVNKALG R L F A R H 2 1 2 0 0 0 1 0 0 0 3 0 0 1 0 1 1 1 0 0 0 0 13 0 1533.794 A0A024R363;A0A087X0F1;Q9UK61 A0A024R363 375 387 C3orf63;FAM208A Protein FAM208A no no 2 0.0014639 73.067 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7817 129;2105 7997 20699 32488 32488 1 LFPDTPLALDANK KKVAKAYAALAALEKLFPDTPLALDANKKK EKLFPDTPLALDANKKKRAPVPVRGGPKFA K L F N K K 2 0 1 2 0 0 0 0 0 0 3 1 0 1 2 0 1 0 0 0 0 0 13 0 1413.7504 F4ZW64;F4ZW65;A0A024R7C7;F4ZW66;Q12906;A8K590;B4DFG4;B4DDF3 F4ZW64 588 600 ILF3 Interleukin enhancer-binding factor 3 yes no 2 7.5482E-05 94.616 2 1.3782 1.388 4.0406 2 Median 1.3782 1.388 4.0406 2 0 Median NaN NaN NaN 0 0 Median 27978000 11167000 16811000 27978000 11167000 16811000 0 0 0 7818 220 7998 20700;20701 32489;32490 32489 2 LFPELFTAENLR QSLSVGNFAARLLVRLFPELFTAENLRLQY LVRLFPELFTAENLRLQYNHSGACNKKQLD R L F L R L 1 1 1 0 0 0 2 0 0 0 3 0 0 2 1 0 1 0 0 0 0 0 12 0 1448.7664 Q5T5X7 Q5T5X7 747 758 BEND3 BEN domain-containing protein 3 yes yes 2 0.00018402 76.228 2 2 0.76642 0.72331 8.0454 4 Median 0.65586 0.67019 10.816 2 0 Median 0.82654 0.73081 1.4908 2 0 Median 20175000 11354000 8821000 16204000 9147400 7056600 3970600 2206200 1764400 7819 1822 7999 20702;20703;20704;20705 32491;32492;32493;32494;32495;32496;32497;32498 32492 8 LFPGFEIETVK CRDEPLHALYDNVEKLFPGFEIETVKNNLR NVEKLFPGFEIETVKNNLRILFNNAVKKRL K L F V K N 0 0 0 0 0 0 2 1 0 1 1 1 0 2 1 0 1 0 0 1 0 0 11 0 1278.686 B4DY32;P08243;F8WEJ5 B4DY32 139 149 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2 0.0067134 63.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14445000 0 14445000 14445000 0 14445000 0 0 0 7820 1051 8000 20706 32499 32499 1 LFPYIQK ALVAAEDVSDNIIAKLFPYIQKGLKSSLPD VSDNIIAKLFPYIQKGLKSSLPDYRAATYM K L F Q K G 0 0 0 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 7 0 907.51674 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 242 248 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.036835 61.123 1 0.97344 1.0972 NaN 1 Median 0.97344 1.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median 67839000 34017000 33821000 67839000 34017000 33821000 0 0 0 7821 897 8001 20707 32500 32500 1 LFQCLLHR DLFPTTKIPNPRFQRLFQCLLHRALHPREP PNPRFQRLFQCLLHRALHPREPLPPIQQHI R L F H R A 0 1 0 0 1 1 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 8 0 1085.5804 P13010;Q53T09 P13010 490 497 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 0.0032126 65.038 2 1 0.28739 0.32961 16.659 3 Median 0.29517 0.32998 0.15671 2 0 Median 0.28739 0.24727 NaN 1 0 Median 130610000 101980000 28631000 123550000 96928000 26624000 7059400 5052400 2007000 7822 1476 8002 20708;20709;20710 32501;32502;32503 32502 3 LFQECCPHSTDR AKIKELRENTQTTIKLFQECCPHSTDRVVL TIKLFQECCPHSTDRVVLIGGKPDRVVECI K L F D R V 0 1 0 1 2 1 1 0 1 0 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1548.6449 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2 B4DUQ1 156 167 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2;3 1.5402E-37 176.42 4 4 1.3783 1.3431 38.441 8 Median 1.6268 1.8326 5.5608 4 0 Median 1.0605 0.87739 9.6923 4 0 Median 271590000 107000000 164590000 241400000 92449000 148950000 30186000 14549000 15637000 7823 102 8003 20711;20712;20713;20714;20715;20716;20717;20718 32504;32505;32506;32507;32508;32509;32510;32511;32512;32513;32514;32515;32516;32517 32508 14 LFQEDDEIPLYLK ASRRHFKNKVPEKQKLFQEDDEIPLYLKGG QKLFQEDDEIPLYLKGGVADALLYRATMIL K L F L K G 0 0 0 2 0 1 2 0 0 1 3 1 0 1 1 0 0 0 1 0 0 0 13 0 1621.8239 Q496I0;D6RIE3;D6RGV5;H0UI06;P14406 Q496I0 34 46 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes no 2 2.806E-06 109.16 2 2 0.85179 0.89223 11.815 3 Median 0.84649 0.88714 0.80878 2 0 Median 1.3345 1.0883 NaN 1 0 Median 73146000 35764000 37382000 64636000 33280000 31356000 8509600 2483700 6025900 7824 1202 8004 20719;20720;20721;20722 32518;32519;32520;32521;32522;32523;32524;32525;32526 32518 9 LFQEDPEAFLLYHR LNEQLYSGPSSAAQRLFQEDPEAFLLYHRG RLFQEDPEAFLLYHRGFQSQVKKWPLQPVD R L F H R G 1 1 0 1 0 1 2 0 1 0 3 0 0 2 1 0 0 0 1 0 0 0 14 0 1776.8835 O43159;E9PPY3 O43159 269 282 RRP8 Ribosomal RNA-processing protein 8 yes no 3 4.6914E-05 76.357 2 2 0.90642 0.83586 35.524 4 Median 1.0972 1.1419 2.0652 2 0 Median 0.74558 0.61743 0.77594 2 0 Median 64099000 33614000 30485000 44930000 23520000 21410000 19169000 10094000 9075300 7825 1380 8005 20723;20724;20725;20726 32527;32528;32529;32530;32531;32532;32533 32531 7 LFQITPDK SGSQLLVGCEDGSVKLFQITPDKIQFERNF CEDGSVKLFQITPDKIQFERNFDRQKSRIL K L F D K I 0 0 0 1 0 1 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 8 0 960.52803 Q969X6;H3BSH7;H3BPD7;I3L4T9;J3KSI1;J3KSE6;J3KTR0 Q969X6 127 134 CIRH1A Cirhin yes no 2 2.6735E-05 138.9 2 2 1.0459 1.0108 1.5681 4 Linear 0.90843 1.0073 0.9486 2 0 Median 1.2163 0.98212 0.28959 2 0 Median 148950000 77336000 71619000 130990000 68847000 62141000 17967000 8489300 9477300 7826 1955 8006 20727;20728;20729;20730 32534;32535;32536;32537;32538;32539;32540;32541 32535 8 LFQLPTPPLSR VGFGHMSTTGCVLNKLFQLPTPPLSRHQLK VLNKLFQLPTPPLSRHQLKRLEEHRYQSAG K L F S R H 0 1 0 0 0 1 0 0 0 0 3 0 0 1 3 1 1 0 0 0 0 0 11 0 1267.7289 A0A0C4DGS9;B3KN25;A0A024R0C0;Q9Y6K0 A0A0C4DGS9 35 45 CEPT1 Choline/ethanolaminephosphotransferase 1 yes no 2 0.0026948 61.161 2 0.95818 0.98417 4.4491 2 Median 0.95818 0.98417 4.4491 2 0 Median NaN NaN NaN 0 0 Median 10722000 4435700 6286400 10722000 4435700 6286400 0 0 0 7827 41 8007 20731;20732 32542;32543 32543 2 LFQVEYAIEAIK SEYDRGVNTFSPEGRLFQVEYAIEAIKLAS EGRLFQVEYAIEAIKLASTAIGIQTSEGVC R L F I K L 2 0 0 0 0 1 2 0 0 2 1 1 0 1 0 0 0 0 1 1 0 0 12 0 1422.7759 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 21 32 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 2 2.0721E-08 120.68 2 1 1.9164 2.1023 34.904 3 Plateau 1.9525 2.0946 0.51836 2 0 Median 1.4403 1.1444 NaN 1 0 Median 78058000 28495000 49563000 71505000 25417000 46088000 6553400 3078800 3474600 7828 595 8008 20733;20734;20735 32544;32545;32546;32547;32548 32546 5 LFSIVRPR ______________________________ IFEYIDRLFSIVRPRRLLYMAIDGVAPRAK R L F P R R 0 2 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 8 1 986.60253 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 12 19 XRN2 5-3 exoribonuclease 2 yes no 3 0.0096597 57.177 2 1.0249 1.0785 3.4774 2 Median 1.0249 1.0785 3.4774 2 0 Median NaN NaN NaN 0 0 Median 28139000 14548000 13591000 28139000 14548000 13591000 0 0 0 7829 903 8009 20736;20737 32549;32550;32551 32550 3 LFSLELVDESGEIR KSQIRTWSNSRGEGKLFSLELVDESGEIRA KLFSLELVDESGEIRATAFNEQVDKFFPLI K L F I R A 0 1 0 1 0 0 3 1 0 1 3 0 0 1 0 2 0 0 0 1 0 0 14 0 1605.825 P27694 P27694 221 234 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 4.9902E-10 114.86 2 2 0.27996 0.24078 NaN 1 Median NaN NaN NaN 0 0 Median 0.27996 0.24078 NaN 1 0 Median 37411000 34234000 3177100 28428000 28428000 0 8983400 5806300 3177100 7830 1525 8010 20738;20739;20740;20741 32552;32553;32554;32555;32556 32552 5 LFSLPAQPLWNNR TKKLMMWKETGGVEKLFSLPAQPLWNNRLL EKLFSLPAQPLWNNRLLKLFTRCLTPLVPE K L F N R L 1 1 2 0 0 1 0 0 0 0 3 0 0 1 2 1 0 1 0 0 0 0 13 0 1554.8307 A0A024R9J0;O60216 A0A024R9J0 372 384 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 0.010685 45.137 1 1.8494 1.5727 NaN 1 Median NaN NaN NaN 0 0 Median 1.8494 1.5727 NaN 1 0 Median 2963000 1047800 1915200 0 0 0 2963000 1047800 1915200 7831 280 8011 20742 32557;32558 32557 2 LFSNFSGADLLK TQQWLLKNRFSSYTRLFSNFSGADLLKLTK YTRLFSNFSGADLLKLTKEDLVQICGAADG R L F L K L 1 0 1 1 0 0 0 1 0 0 3 1 0 2 0 2 0 0 0 0 0 0 12 0 1310.6871 A8KAN5;A0A024R2L0;Q9NZI7;A0A024R2J0;F8WEP8 A8KAN5 388 399 UBP1 Upstream-binding protein 1 yes no 2 0.014846 49.3 2 0.75174 0.758 NaN 1 Median 0.75174 0.758 NaN 1 0 Median NaN NaN NaN 0 0 Median 12947000 4694900 8251700 12947000 4694900 8251700 0 0 0 7832 115 8012 20743;20744 32559;32560 32559 2 LFSPLHSGTR FASGFSASGTAASARLFSPLHSGTRFDMHK AASARLFSPLHSGTRFDMHKRSPLLRAPRF R L F T R F 0 1 0 0 0 0 0 1 1 0 2 0 0 1 1 2 1 0 0 0 0 0 10 0 1113.5931 Q03164;E9PR05 Q03164 678 687 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 3 0.029063 32.329 1 1.1639 1.1706 NaN 1 Median 1.1639 1.1706 NaN 1 0 Median NaN NaN NaN 0 0 Median 17360000 8242500 9117300 17360000 8242500 9117300 0 0 0 7833 1680 8013 20745 32561;32562 32562 2 LFSSVTFETVEESK FVTYRPEFLPQVFSKLFSSVTFETVEESKA KLFSSVTFETVEESKAPRTRAVRNVRRHAC K L F S K A 0 0 0 0 0 0 3 0 0 0 1 1 0 2 0 3 2 0 0 2 0 0 14 0 1601.7825 A8K5Y7;Q9HAV4;B3KPQ5;Q9H8N6;B3KNC6 A8K5Y7 577 590 XPO5 Exportin-5 yes no 2 4.7137E-06 95.401 3 1.7827 1.8293 NaN 1 Median 1.7827 1.8293 NaN 1 0 Median NaN NaN NaN 0 0 Median 17532000 3033000 14499000 17532000 3033000 14499000 0 0 0 7834 754 8014 20746;20747;20748 32563;32564;32565;32566;32567;32568 32563 6 LFTAESLIGLK KKGVQLQTHPNVDKKLFTAESLIGLKNPEK VDKKLFTAESLIGLKNPEKSFPVNSDVGVL K L F L K N 1 0 0 0 0 0 1 1 0 1 3 1 0 1 0 1 1 0 0 0 0 0 11 0 1190.6911 B0YIW5;Q6MZV5;B0YIW6;P48444 B0YIW5 337 347 ARCN1;DKFZp686M09245 Coatomer subunit delta yes no 2 0.0025795 73.233 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6210000 0 6210000 6210000 0 6210000 0 0 0 7835 810 8015 20749;20750 32569;32570 32569 2 LFTAHNNMTNYATVWASK NDVVYVIDSCKQKVKLFTAHNNMTNYATVW AHNNMTNYATVWASKTNLEQRKGRAGRVRP K L F S K T 3 0 3 0 0 0 0 0 1 0 1 1 1 1 0 1 3 1 1 1 0 0 18 0 2067.9836 Q08211;B3KU66 Q08211 738 755 DHX9 ATP-dependent RNA helicase A yes no 3 0.00012219 44.577 1 1.4833 1.549 NaN 1 Median 1.4833 1.549 NaN 1 0 Median NaN NaN NaN 0 0 Median 29935000 12020000 17916000 29935000 12020000 17916000 0 0 0 7836 1691 8016 20751 32571;32572 32571 1514 2 LFTLTALR QLVATGAVRDWDDPRLFTLTALRRRGFPPE RDWDDPRLFTLTALRRRGFPPEAINNFCAR R L F L R R 1 1 0 0 0 0 0 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 8 0 933.56475 Q53HS0;P47897;A8K3A8;Q96AW5;B4DNN3;A0A1B0GVU9;H7C0R3;Q9H3A5;Q9BUZ3;B4DDN1;A0A1B0GTT3;A0A0U1RQQ5 Q53HS0 516 523 QARS Glutamine--tRNA ligase yes no 2 0.0023621 100.45 1 1.5612 1.6842 NaN 1 Median 1.5612 1.6842 NaN 1 0 Median NaN NaN NaN 0 0 Median 26266000 9836000 16430000 26266000 9836000 16430000 0 0 0 7837 1575 8017 20752 32573;32574 32574 2 LFTNAVESLDEEEK TPFNTDLGENSGIGKLFTNAVESLDEEEKD KLFTNAVESLDEEEKDYYFSNSDSA_____ K L F E K D 1 0 1 1 0 0 4 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 14 0 1622.7675 Q6P0N0 Q6P0N0 1109 1122 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.00040095 84.479 2 1 1.8098 1.416 NaN 1 Median NaN NaN NaN 0 0 Median 1.8098 1.416 NaN 1 0 Median 3850100 868010 2982100 0 0 0 3850100 868010 2982100 7838 1849 8018 20753;20754;20755 32575;32576;32577 32576 3 LFTNFSGADLLK AQQWLHRNRFSTFTRLFTNFSGADLLKLTR FTRLFTNFSGADLLKLTRDDVIQICGPADG R L F L K L 1 0 1 1 0 0 0 1 0 0 3 1 0 2 0 1 1 0 0 0 0 0 12 0 1324.7027 A0A024R120;Q12800;F8VWL0 A0A024R120 348 359 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.00019881 78.513 2 0.98982 1.0106 2.0187 2 Median 0.98982 1.0106 2.0187 2 0 Median NaN NaN NaN 0 0 Median 27008000 13703000 13306000 27008000 13703000 13306000 0 0 0 7839 66 8019 20756;20757 32578;32579;32580;32581 32581 4 LFTPSPEIVK QLVKETGVTKRTPQKLFTPSPEIVKYTHKL RTPQKLFTPSPEIVKYTHKLAMERLYAVFT K L F V K Y 0 0 0 0 0 0 1 0 0 1 1 1 0 1 2 1 1 0 0 1 0 0 10 0 1129.6383 Q8TCS8 Q8TCS8 276 285 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.011328 61.962 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4255500 0 4255500 4255500 0 4255500 0 0 0 7840 1931 8020 20758 32582 32582 1 LFVASNQGALHIVQLSGGSFK LRSALQILFSEDSTKLFVASNQGALHIVQL QGALHIVQLSGGSFKHLHAFQPQSGTVEAM K L F F K H 2 0 1 0 0 2 0 3 1 1 3 1 0 2 0 3 0 0 0 2 0 0 21 0 2172.1691 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YWK2;H3BRM8 Q969X6 452 472 CIRH1A Cirhin yes no 3 3.4048E-29 99.059 2 2 1.1225 1.0825 2.6222 4 Median 0.9636 1.082 3.7443 2 0 Median 1.2986 1.0825 2.5701 2 0 Median 264120000 130860000 133260000 176310000 92987000 83320000 87815000 37870000 49944000 7841 1955 8021 20759;20760;20761;20762 32583;32584;32585;32586;32587;32588;32589;32590 32583 8 LFVDTDADTR LAFYSQEVRDLFQMKLFVDTDADTRLSRRV LFQMKLFVDTDADTRLSRRVLRDISERGRD K L F T R L 1 1 0 3 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 1 0 0 10 0 1151.5459 A0A024R912;Q9BZX2 A0A024R912 153 162 UCK2 Uridine kinase;Uridine-cytidine kinase 2 yes no 2 0.00032481 76.1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7842 268 8022 20763 32591 32591 1 LFVEALGQIGPAPPLK ADFSVPLIIDIKCTKLFVEALGQIGPAPPL FVEALGQIGPAPPLKVHVDCMTSQKLVRLP K L F L K V 2 0 0 0 0 1 1 2 0 1 3 1 0 1 3 0 0 0 0 1 0 0 16 0 1648.9552 Q53SY7;F8VPD4;P27708 Q53SY7 1361 1376 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 1.8151E-12 121.68 2 2 0.71884 0.65143 30.502 4 Median 0.81342 0.83949 6.1995 2 0 Median 0.62579 0.4997 7.8293 2 0 Median 38887000 19886000 19001000 32875000 16121000 16754000 6012100 3764900 2247100 7843 1259 8023 20764;20765;20766;20767 32592;32593;32594;32595;32596 32593 5 LFVGGLK REDSARPGAHAKVKKLFVGGLKGDVAEGDL GAHAKVKKLFVGGLKGDVAEGDLIEHFSQF K L F L K G 0 0 0 0 0 0 0 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 7 0 732.45341 Q13151 Q13151 100 106 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 0.02838 72.021 6 2.2069 2.519 36.009 6 Median 2.2069 2.519 36.009 6 0 Median NaN NaN NaN 0 0 Median 817920000 266710000 551220000 817920000 266710000 551220000 0 0 0 7844 1706 8024 20768;20769;20770;20771;20772;20773 32597;32598;32599;32600;32601;32602;32603 32598 7 LFVGNLPADITEDEFK LLRRPGEKTYTQRCRLFVGNLPADITEDEF FVGNLPADITEDEFKRLFAKYGEPGEVFIN R L F F K R 1 0 1 2 0 0 2 1 0 1 2 1 0 2 1 0 1 0 0 1 0 0 16 0 1806.904 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 226 241 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 2.5676E-06 99.5 2 2 1.379 1.3111 56.467 4 Median 1.8854 2.1115 0.79555 2 0 Median 0.97736 0.79475 4.192 2 0 Median 148080000 56189000 91891000 128540000 45829000 82709000 19542000 10360000 9181900 7845 1510 8025 20774;20775;20776;20777 32604;32605;32606;32607;32608;32609;32610 32607 7 LFVGNLPADITEDEFKR LLRRPGEKTYTQRCRLFVGNLPADITEDEF VGNLPADITEDEFKRLFAKYGEPGEVFINK R L F K R L 1 1 1 2 0 0 2 1 0 1 2 1 0 2 1 0 1 0 0 1 0 0 17 1 1963.0051 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 226 242 SFPQ Splicing factor, proline- and glutamine-rich yes no 3 0.018382 20.65 1 0.89048 0.80177 NaN 1 Median NaN NaN NaN 0 0 Median 0.89048 0.80177 NaN 1 0 Median 1953300 979840 973450 0 0 0 1953300 979840 973450 7846 1510 8026 20778 32611 32611 1 LFVGNLPPDITEEEMRK NFRKPGEKTFTRRSRLFVGNLPPDITEEEM VGNLPPDITEEEMRKLFEKYGKAGEVFIHK R L F R K L 0 1 1 1 0 0 3 1 0 1 2 1 1 1 2 0 1 0 0 1 0 0 17 1 1987.0085 A8K525;A0A0S2Z4Z9;Q15233;C9IZL7;C9JYS8;A0A0S2Z4E7;C9J4X2 A8K525 76 92 NONO Non-POU domain-containing octamer-binding protein yes no 3 0.00039668 42.813 1 3.1807 3.6587 NaN 1 Median 3.1807 3.6587 NaN 1 0 Median NaN NaN NaN 0 0 Median 26520000 5590300 20930000 26520000 5590300 20930000 0 0 0 7847 573 8027 20779 32612 32612 427 1 LFVGSIPK PGKHLGVCISVANNRLFVGSIPKNKTKENI ISVANNRLFVGSIPKNKTKENILEEFSKVT R L F P K N 0 0 0 0 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 8 0 859.51674 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5;B4DT28;B4DMD1;Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645 B2R7W4 248 255 HNRNPR;HNRPR;DKFZp686A13234;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2 0.02313 58.815 2 2.1562 2.2134 NaN 1 Median 2.1562 2.2134 NaN 1 0 Median NaN NaN NaN 0 0 Median 17809000 4353900 13455000 17809000 4353900 13455000 0 0 0 7848 855;864 8028 20780;20781 32613;32614 32613 2 LFVIAQK KQYNCLTQRIEREKKLFVIAQKIQTRKDLM QRIEREKKLFVIAQKIQTRKDLMDKTQKVK K L F Q K I 1 0 0 0 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 7 0 817.50617 Q9Y3A2 Q9Y3A2 212 218 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.00050691 143.22 2 0.98757 1.1118 4.3647 2 Median 0.98757 1.1118 4.3647 2 0 Median NaN NaN NaN 0 0 Median 224980000 108570000 116400000 224980000 108570000 116400000 0 0 0 7849 2132 8029 20782;20783 32615;32616 32615 2 LFVINEVCEMK MPHSKADTKMDRKDKLFVINEVCEMKNCNK RKDKLFVINEVCEMKNCNKCIYFEAKKKQD K L F M K N 0 0 1 0 1 0 2 0 0 1 1 1 1 1 0 0 0 0 0 2 0 0 11 0 1380.6781 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 100 110 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 4.2585E-06 109.29 1 3 1.1473 1.0397 32.625 4 Median 1.2815 1.4584 NaN 1 0 Median 1.0272 0.82217 29.445 3 0 Median 216270000 96265000 120000000 168690000 71880000 96808000 47580000 24385000 23195000 7850 1934 8030;8031 20784;20785;20786;20787 32617;32618;32619;32620;32621;32622;32623;32624 32617 1773 8 LFVSDGVPGCLPVLAAAGR ______________________________ DGVPGCLPVLAAAGRARGRAEVLISTVGPE R L F G R A 3 1 0 1 1 0 0 3 0 0 3 0 0 1 2 1 0 0 0 3 0 0 19 0 1898.0084 A8K492;P56192;B4E0E9;A0A024RBA2;F5H2V6;F8VS26;F8W0M7;F8W0S4;F8VZZ9;F8VPL7 A8K492 3 21 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 3.9757E-08 92.247 2 2.5713 2.5959 1.4423 2 Median 2.5713 2.5959 1.4423 2 0 Median NaN NaN NaN 0 0 Median 26219000 7384100 18835000 26219000 7384100 18835000 0 0 0 7851 732 8032 20788;20789 32625;32626;32627;32628 32626 4 LFVTNDAATILR ______________________________ LEKLFVTNDAATILRELEVQHPAAKMIVMA K L F L R E 2 1 1 1 0 0 0 0 0 1 2 0 0 1 0 0 2 0 0 1 0 0 12 0 1332.7402 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 12 23 CCT8 T-complex protein 1 subunit theta yes no 2 0.014496 63.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4927700 4927700 0 4927700 4927700 0 0 0 0 7852 1592 8033 20790 32629 32629 1 LFYLALPPTVYEAVTK NSHMNALHLGSQANRLFYLALPPTVYEAVT FYLALPPTVYEAVTKNIHESCMSQIGWNRI R L F T K N 2 0 0 0 0 0 1 0 0 0 3 1 0 1 2 0 2 0 2 2 0 0 16 0 1824.0073 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;Q0PHS1;E7EUI8;B4DYA7;E9PD92;E7EM57;A7IZZ3 Q2VF42 97 112 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.00028248 56.043 2 4.4135 4.4902 0.711 2 Median 4.4135 4.4902 0.711 2 0 Median NaN NaN NaN 0 0 Median 43483000 8060500 35423000 43483000 8060500 35423000 0 0 0 7853 775 8034 20791;20792 32630;32631;32632 32630 3 LGAGEGGEASVSPEK DQPAARTPRSKKKKKLGAGEGGEASVSPEK LGAGEGGEASVSPEKTSTTSKGKAKRDKAS K L G E K T 2 0 0 0 0 0 3 4 0 0 1 1 0 0 1 2 0 0 0 1 0 0 15 0 1386.6627 E7ETY2;B4DRA2;Q9UFD4;Q13428 Q13428 1367 1381 TCOF1;DKFZp434G1035 Treacle protein no no 2 0.0048092 47.062 2 0.20774 0.16764 NaN 1 Median NaN NaN NaN 0 0 Median 0.20774 0.16764 NaN 1 0 Median 4337100 3805200 531840 0 0 0 4337100 3805200 531840 7854 1712;1225 8035 20793;20794 32633;32634;32635 32634 3 LGAGPDGVEEIK QSLLRMLFKRNPANRLGAGPDGVEEIKRHS ANRLGAGPDGVEEIKRHSFFSTIDWNKLYR R L G I K R 1 0 0 1 0 0 2 3 0 1 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1183.6085 B4DKZ2;B4DG22;B7ZB17;P51812 B4DKZ2 282 293 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 2.4328E-05 101.38 2 1.3098 1.3373 18.687 2 Median 1.3098 1.3373 18.687 2 0 Median NaN NaN NaN 0 0 Median 34157000 15385000 18772000 34157000 15385000 18772000 0 0 0 7855 971 8036 20795;20796 32636;32637;32638;32639 32636 4 LGALALPR LEEEAAARGRLERTRLGALALPRGDRPGRA GRLERTRLGALALPRGDRPGRAPPAASARP R L G P R G 2 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 809.51232 Q6SPF0;E9PIW9 Q6SPF0 292 299 SAMD1 Atherin yes no 2 0.01006 76.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7856 1861 8037 20797 32640 32640 1 LGALGGAR ______________________________ ______________________________ R L G A R A 2 1 0 0 0 0 0 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 713.41842 H0YNE5;H0YLG5;A0A024R9P6;Q96TC7;H0YLV7 H0YNE5 4 11 RMDN3;FAM82C Regulator of microtubule dynamics protein 3 yes no 2 0.011224 75.311 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7857 285 8038 20798 32641 32641 1 LGALTAEEIALK VASIKEKVKKAKNKKLGALTAEEIALKMEA NKKLGALTAEEIALKMEADEKKKKKKK___ K L G L K M 3 0 0 0 0 0 2 1 0 1 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1227.7075 Q13601 Q13601 358 369 KRR1 KRR1 small subunit processome component homolog yes yes 2 2.036E-08 120.76 2 1 1.1246 1.2797 20.4 3 Plateau 1.1229 1.2692 1.1734 2 0 Median 1.1246 0.89163 NaN 1 0 Median 175180000 82041000 93138000 164900000 76973000 87928000 10278000 5067600 5210600 7858 1717 8039 20799;20800;20801 32642;32643;32644;32645;32646;32647 32643 6 LGAMDIDTHK SKRKSGGNEVSIEERLGAMDIDTHKKGKED SIEERLGAMDIDTHKKGKEDLQTNSFPVLL R L G H K K 1 0 0 2 0 0 0 1 1 1 1 1 1 0 0 0 1 0 0 0 0 0 10 0 1099.5332 Q15061 Q15061 442 451 WDR43 WD repeat-containing protein 43 yes yes 3 0.00072723 67.113 2 1.1879 1.2388 8.235 2 Median 1.1879 1.2388 8.235 2 0 Median NaN NaN NaN 0 0 Median 66372000 31932000 34440000 66372000 31932000 34440000 0 0 0 7859 1752 8040 20802;20803 32648;32649 32648 1602 2 LGAMDIDTHKK SKRKSGGNEVSIEERLGAMDIDTHKKGKED IEERLGAMDIDTHKKGKEDLQTNSFPVLLT R L G K K G 1 0 0 2 0 0 0 1 1 1 1 2 1 0 0 0 1 0 0 0 0 0 11 1 1227.6282 Q15061 Q15061 442 452 WDR43 WD repeat-containing protein 43 yes yes 3 0.00015627 77.062 2 1.0007 1.1699 9.3032 2 Median 1.0007 1.1699 9.3032 2 0 Median NaN NaN NaN 0 0 Median 88863000 52598000 36265000 88863000 52598000 36265000 0 0 0 7860 1752 8041 20804;20805 32650;32651 32651 1602 2 LGAMSAAPSQPNSQIR PVVPSVPMASPAPGRLGAMSAAPSQPNSQI GAMSAAPSQPNSQIRQNIRRSLKEILWKRV R L G I R Q 3 1 1 0 0 2 0 1 0 1 1 0 1 0 2 3 0 0 0 0 0 0 16 0 1626.8148 Q9BTC0 Q9BTC0 656 671 DIDO1 Death-inducer obliterator 1 yes yes 2 3.6975E-09 108.35 3 0.89994 0.88505 1.6564 3 Median 0.89994 0.88505 1.6564 3 0 Median NaN NaN NaN 0 0 Median 30734000 17207000 13527000 30734000 17207000 13527000 0 0 0 7861 2002 8042 20806;20807;20808 32652;32653;32654;32655;32656 32656 1842 4 LGANILLETFK TSPSLSRMPNQHACKLGANILLETFKIHEM HACKLGANILLETFKIHEMIRQEILEQVLN K L G F K I 1 0 1 0 0 0 1 1 0 1 3 1 0 1 0 0 1 0 0 0 0 0 11 0 1217.702 B7ZMF2;Q9NVI1;H3BP78;F8W7R3;B3KNW8 B7ZMF2 421 431 FANCI Fanconi anemia group I protein yes no 2 0.00012288 96.143 3 2 0.99265 0.83353 20.747 3 Median 0.70571 0.71617 NaN 1 0 Median 1.1045 0.94857 18.284 2 0 Median 8919500 3453100 5466400 6681500 2394300 4287300 2238000 1058900 1179100 7862 1116 8043 20809;20810;20811;20812;20813 32657;32658;32659;32660;32661;32662;32663 32658 7 LGAPENSGISTLER ______________________________ RLGAPENSGISTLERGQKPPPTPSGKLVSI R L G E R G 1 1 1 0 0 0 2 2 0 1 2 0 0 0 1 2 1 0 0 0 0 0 14 0 1442.7365 C9JME2;Q9Y4F1;M0QYB0;A0A1B0GV68 C9JME2 14 27 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 yes no 2 0.01159 50.284 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7863 1139 8044 20814 32664 32664 1 LGAQALLGAAK DGGVKMGLPRRLAVRLGAQALLGAAKMLLH LAVRLGAQALLGAAKMLLHSEQHPGQLKDN R L G A K M 4 0 0 0 0 1 0 2 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1011.6077 Q2TU78;E7D7X9;A0A024R8U9;P32322;Q8TBX0;J3QKT4;E7D7Y0;A0A1B2JLU7;J3KQ22;J3QL24 Q2TU78 85 95 PIG45;PYCR1 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 2 2.7473E-08 121.05 2 0.67112 0.70177 1.9631 2 Median 0.67112 0.70177 1.9631 2 0 Median NaN NaN NaN 0 0 Median 38361000 21999000 16362000 38361000 21999000 16362000 0 0 0 7864 259 8045 20815;20816 32665;32666;32667;32668 32667 4 LGASLAFNNIYR KRLYSLALHPNAFKRLGASLAFNNIYREFR FKRLGASLAFNNIYREFREEESLVEQFVFE R L G Y R E 2 1 2 0 0 0 0 1 0 1 2 0 0 1 0 1 0 0 1 0 0 0 12 0 1337.7092 P78527;B4DL41 P78527 1076 1087 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 3.8421E-23 160.59 2 1 0.62614 0.72761 52.766 3 Plateau 0.64006 0.71805 1.8712 2 0 Median 0.33836 0.28798 NaN 1 0 Median 132110000 81227000 50887000 112650000 66796000 45858000 19461000 14431000 5029500 7865 1665 8046 20817;20818;20819 32669;32670;32671;32672;32673 32669 5 LGASNSPGQPNSVK QQPEEHRPKIGLSLKLGASNSPGQPNSVKR KLGASNSPGQPNSVKRKKLPVDSVFNKFED K L G V K R 1 0 2 0 0 1 0 2 0 0 1 1 0 0 2 3 0 0 0 1 0 0 14 0 1354.6841 P49756 P49756 672 685 RBM25 RNA-binding protein 25 yes yes 2 3.6108E-22 149.94 2 1.1006 1.1182 8.0881 2 Median 1.1006 1.1182 8.0881 2 0 Median NaN NaN NaN 0 0 Median 26294000 11474000 14819000 26294000 11474000 14819000 0 0 0 7866 1587 8047 20820;20821 32674;32675;32676 32674 3 LGATIEHISVSPAGDLFCTSHSDNK EWRDATEKNKEFLPRLGATIEHISVSPAGD SPAGDLFCTSHSDNKIIIIHRNLEASAVIQ R L G N K I 2 0 1 2 1 0 1 2 2 2 2 1 0 1 1 4 2 0 0 1 0 0 25 0 2655.2599 A8K330;Q8IWA0 A8K330 289 313 WDR75 WD repeat-containing protein 75 yes no 3 0.0062812 22.655 1 1.1173 0.88626 NaN 1 Median NaN NaN NaN 0 0 Median 1.1173 0.88626 NaN 1 0 Median 6433000 3047000 3385900 0 0 0 6433000 3047000 3385900 7867 716 8048 20822 32677 32677 1 LGAVFNQVAFPLQYTPR VAISTNTLRILALEKLGAVFNQVAFPLQYT AVFNQVAFPLQYTPRKFVIHPESNNLIIIE K L G P R K 2 1 1 0 0 2 0 1 0 0 2 0 0 2 2 0 1 0 1 2 0 0 17 0 1920.0258 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 770 786 SF3B3 Splicing factor 3B subunit 3 yes no 2 1.5103E-25 147.33 2 2 1.3454 1.2883 21.959 4 Median 1.3454 1.4102 5.4554 2 0 Median 1.2313 1.0431 22.524 2 0 Median 58119000 24244000 33875000 44344000 18720000 25624000 13774000 5523800 8250600 7868 764 8049 20823;20824;20825;20826 32678;32679;32680;32681;32682;32683 32679 6 LGAVPATSGPTTFK ______________________________ RLGAVPATSGPTTFKQQRSTRIVGAKNRTQ R L G F K Q 2 0 0 0 0 0 0 2 0 0 1 1 0 1 2 1 3 0 0 1 0 0 14 0 1345.7242 G3XAG1;Q96ME7 G3XAG1 5 18 ZNF512 Zinc finger protein 512 yes no 2 3.5543E-05 91.855 2 1 0.70859 0.56168 NaN 1 Median NaN NaN NaN 0 0 Median 0.70859 0.56168 NaN 1 0 Median 51731000 49736000 1995100 46984000 46984000 0 4746700 2751600 1995100 7869 1275 8050 20827;20828;20829 32684;32685;32686;32687 32684 4 LGAVYDVSHYNALLK ERTEFAHRIWDTLQKLGAVYDVSHYNALLK LGAVYDVSHYNALLKVYLQNEYKFSPTDFL K L G L K V 2 0 1 1 0 0 0 1 1 0 3 1 0 0 0 1 0 0 2 2 0 0 15 0 1661.8777 E5KNY5;P42704;B4DSR0;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 156 170 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 3 6.8375E-05 80.746 2 2.852 2.9685 NaN 1 Median 2.852 2.9685 NaN 1 0 Median NaN NaN NaN 0 0 Median 51704000 10032000 41672000 51704000 10032000 41672000 0 0 0 7870 1207 8051 20830;20831 32688;32689 32689 2 LGCFNLTIK AVVLQCGSDSLSGDRLGCFNLTIKGHAKCV SLSGDRLGCFNLTIKGHAKCVEFVKSFNLP R L G I K G 0 0 1 0 1 0 0 1 0 1 2 1 0 1 0 0 1 0 0 0 0 0 9 0 1064.5689 Q6IT96;Q13547;B5BU61;B4DRG0;Q5HYD4 Q6IT96 271 279 HDAC1;DKFZp686H12203 Histone deacetylase;Histone deacetylase 1 yes no 2 0.0018198 80.438 1 1 1.2263 1.1395 30.23 2 Median 0.84569 0.92018 NaN 1 0 Median 1.7781 1.411 NaN 1 0 Median 49819000 26422000 23397000 39632000 22546000 17086000 10187000 3876400 6310800 7871 1715 8052 20832;20833 32690;32691 32690 2 LGDALPEEIREPALR AVTEMLQLCGRFVQKLGDALPEEIREPALR LGDALPEEIREPALRDAQWTFESAVQENIS K L G L R D 2 2 0 1 0 0 3 1 0 1 3 0 0 0 2 0 0 0 0 0 0 0 15 1 1677.905 Q53FM2;B2R9C5;Q96IY1;Q5SY74;B4E071 Q53FM2 60 74 C1orf48;NSL1 Kinetochore-associated protein NSL1 homolog yes no 3 0.00010385 71.344 2 0.63776 0.69744 12.176 2 Median 0.63776 0.69744 12.176 2 0 Median NaN NaN NaN 0 0 Median 54349000 37084000 17264000 54349000 37084000 17264000 0 0 0 7872 866 8053 20834;20835 32692;32693;32694 32694 3 LGDAVEQGVINNTVLGYFIGR SAKAQVSGQSARKMRLGDAVEQGVINNTVL QGVINNTVLGYFIGRIYLYLTKVGISPDKL R L G G R I 1 1 2 1 0 1 1 4 0 2 2 0 0 1 0 0 1 0 1 3 0 0 21 0 2234.1695 A0A090N8G0;P41250 A0A090N8G0 338 358 GARS Glycine--tRNA ligase yes no 2 6.2157E-75 176.75 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29653000 0 29653000 29653000 0 29653000 0 0 0 7873 457 8054 20836 32695 32695 1 LGDAVIWGTGQLFQAQQDLLHR LICRDLLILQQLLMRLGDAVIWGTGQLFQA GTGQLFQAQQDLLHRTAPLLLSYYLIKWGS R L G H R T 2 1 0 2 0 4 0 3 1 1 4 0 0 1 0 0 1 1 0 1 0 0 22 0 2465.2815 G3V198;Q12769;E9PR16 G3V198 709 730 NUP160 Nuclear pore complex protein Nup160 yes no 3 6.3638E-06 54.672 2 0.9188 0.95973 NaN 1 Median 0.9188 0.95973 NaN 1 0 Median NaN NaN NaN 0 0 Median 6392700 4004300 2388400 6392700 4004300 2388400 0 0 0 7874 1271 8055 20837;20838 32696;32697 32697 2 LGDDIDLIVR KNEIASVAYRYRRWKLGDDIDLIVRCEHDG YRRWKLGDDIDLIVRCEHDGVMTGANGEVS K L G V R C 0 1 0 3 0 0 0 1 0 2 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1127.6186 O15371;B4E1K8 O15371 365 374 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 0.0040491 74.173 2 2.1007 2.0983 NaN 1 Median 2.1007 2.0983 NaN 1 0 Median NaN NaN NaN 0 0 Median 28144000 3485000 24659000 28144000 3485000 24659000 0 0 0 7875 1378 8056 20839;20840 32698;32699 32698 2 LGDFPYVSILDPR YHDSEEGQRYIQFYKLGDFPYVSILDPRTG YKLGDFPYVSILDPRTGQKLVEWHQLDVSS K L G P R T 0 1 0 2 0 0 0 1 0 1 2 0 0 1 2 1 0 0 1 1 0 0 13 0 1490.7769 O94888;C9JAT7;B4E126 O94888 222 234 UBXN7 UBX domain-containing protein 7 yes no 2 0.0036439 49.35 1 0.9774 1.0185 NaN 1 Median 0.9774 1.0185 NaN 1 0 Median NaN NaN NaN 0 0 Median 5152900 2366100 2786800 5152900 2366100 2786800 0 0 0 7876 1417 8057 20841 32700;32701 32700 2 LGDGLFLQCCREVAAR GRKKVTAVHKANIMKLGDGLFLQCCREVAA GDGLFLQCCREVAARYPQITFENMIVDNTT K L G A R Y 2 2 0 1 2 1 1 2 0 0 3 0 0 1 0 0 0 0 0 1 0 0 16 1 1863.9084 H7C1W2;E9PF84;O15384;G5E9Q7;D3DWV9;E7EQB8;P51553;Q59GA3;O15385;H0Y5Q7 H7C1W2 167 182 IDH3G;hCG_2004980 Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial yes no 3 0.0072589 17.703 2 0.69047 0.77969 5.013 2 Median 0.69047 0.77969 5.013 2 0 Median NaN NaN NaN 0 0 Median 209280000 116320000 92963000 209280000 116320000 92963000 0 0 0 7877 1199 8058 20842;20843 32702;32703 32703 2 LGDHQSPATPAFK YSAFLPDGCDHLRDKLGDHQSPATPAFKSL DKLGDHQSPATPAFKSLEAFFLYGRLYEFW K L G F K S 2 0 0 1 0 1 0 1 1 0 1 1 0 1 2 1 1 0 0 0 0 0 13 0 1367.6834 B7ZLC9;Q8TEQ6 B7ZLC9 1261 1273 GEMIN5 Gem-associated protein 5 yes no 2 0.00010433 91.313 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5536300 0 5536300 5536300 0 5536300 0 0 0 7878 1114 8059 20844;20845 32704;32705 32704 2 LGDLGAIDEK IQEKKSGRIPGIYGRLGDLGAIDEKYDVAI GIYGRLGDLGAIDEKYDVAISSCCHALDYI R L G E K Y 1 0 0 2 0 0 1 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1029.5342 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 619 628 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.5031E-06 111.61 2 2 1.2526 1.2427 22.607 4 Median 0.86357 1.0172 1.6545 2 0 Median 1.8063 1.5042 0.33869 2 0 Median 853910000 442760000 411150000 765050000 410140000 354910000 88853000 32615000 56238000 7879 2070 8060 20846;20847;20848;20849 32706;32707;32708;32709;32710;32711;32712;32713;32714;32715;32716 32708 11 LGDLVWGK RRRWLGGKMAAVSLRLGDLVWGKLGRYPPW MAAVSLRLGDLVWGKLGRYPPWPGKIVNPP R L G G K L 0 0 0 1 0 0 0 2 0 0 2 1 0 0 0 0 0 1 0 1 0 0 8 0 886.49125 D3DUE6;K7ELL0;D3DUE7;Q49A26;K7EQB2 D3DUE7 30 37 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2 0.022274 57.281 1 1 1.5149 1.3815 16.302 2 Median 1.2142 1.2311 NaN 1 0 Median 1.8901 1.5503 NaN 1 0 Median 34633000 15688000 18945000 29521000 13991000 15529000 5111800 1696300 3415500 7880 1194;1193;1346 8061 20850;20851 32717;32718 32717 2 LGDLYEEEMR LLAELEQLKGQGKSRLGDLYEEEMRELRRQ QGKSRLGDLYEEEMRELRRQVDQLTNDKAR R L G M R E 0 1 0 1 0 0 3 1 0 0 2 0 1 0 0 0 0 0 1 0 0 0 10 0 1253.5598 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;A0A1B0GUA0 V9HWE1 146 155 HEL113;VIM Vimentin yes no 2 1.2772E-06 110.76 2 2 2.7732 2.788 29.918 4 Median 1.88 2.1184 10.476 2 0 Median 4.0722 3.5126 4.3027 2 0 Median 169220000 54546000 114680000 160790000 52651000 108140000 8438200 1895500 6542800 7881 1457 8062;8063 20852;20853;20854;20855 32719;32720;32721;32722;32723;32724 32719 1172 6 LGDPLEAFPVFK AAMDAVCAKVDAANRLGDPLEAFPVFKKYD ANRLGDPLEAFPVFKKYDRNGLNVSIECKR R L G F K K 1 0 0 1 0 0 1 1 0 0 2 1 0 2 2 0 0 0 0 1 0 0 12 0 1331.7125 F2YHM7;A0A024R5C6;Q86UY6;F5H2C9 F2YHM7 35 46 NAA40;NAT11 N-alpha-acetyltransferase 40 yes no 2 4.62E-05 98.943 1 1.0563 1.1024 NaN 1 Median 1.0563 1.1024 NaN 1 0 Median NaN NaN NaN 0 0 Median 10082000 5193100 4888700 10082000 5193100 4888700 0 0 0 7882 177 8064 20856 32725 32725 1 LGDSHDLQR AWSSLGKRADQRKAKLGDSHDLQRFLSDFR DQRKAKLGDSHDLQRFLSDFRDLMSWINGI K L G Q R F 0 1 0 2 0 1 0 1 1 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1039.5047 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1315 1323 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 0.00012717 97.635 2 1.3554 1.3467 NaN 1 Median 1.3554 1.3467 NaN 1 0 Median NaN NaN NaN 0 0 Median 12126000 3158900 8967400 12126000 3158900 8967400 0 0 0 7883 523 8065 20857;20858 32726;32727 32727 2 LGDSQLVK CLTYLDNGVVFVGSRLGDSQLVKLNVDSNE VVFVGSRLGDSQLVKLNVDSNEQGSYVVAM R L G V K L 0 0 0 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 8 0 858.48108 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 328 335 DDB1 DNA damage-binding protein 1 yes no 2 0.011107 70.69 2 1.1762 0.95017 3.0058 2 Median NaN NaN NaN 0 0 Median 1.1762 0.95017 3.0058 2 0 Median 16509000 6951700 9557000 0 0 0 16509000 6951700 9557000 7884 1770 8066 20859;20860 32728;32729 32728 2 LGEFFQTK DIENEVVQITWNRKKLGEFFQTKYDWDLLA ITWNRKKLGEFFQTKYDWDLLAARSIWAFG K L G T K Y 0 0 0 0 0 1 1 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 8 0 968.49673 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2;K7EP67 B4DZB1 665 672 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0012436 110.81 1 0.93969 0.92529 NaN 1 Median 0.93969 0.92529 NaN 1 0 Median NaN NaN NaN 0 0 Median 24175000 11931000 12243000 24175000 11931000 12243000 0 0 0 7885 794 8067 20861 32730;32731 32730 2 LGEHNIDVLEGNEQFINAAK VVSAAHCYKSRIQVRLGEHNIDVLEGNEQF IDVLEGNEQFINAAKIITHPNFNGNTLDND R L G A K I 2 0 3 1 0 1 3 2 1 2 2 1 0 1 0 0 0 0 0 1 0 0 20 0 2210.0968 CON__P00761 CON__P00761 58 77 yes yes 2;3 2.8667E-32 135.02 5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3926700000 3926700000 0 3877800000 3877800000 0 48854000 48854000 0 + 7886 1148 8068 20862;20863;20864;20865;20866;20867;20868 32732;32733;32734;32735;32736;32737;32738;32739;32740;32741;32742;32743 32734 12 LGEINVIGEPFLNVNCEHIK ENVGIDITEPLYMQRLGEINVIGEPFLNVN VIGEPFLNVNCEHIKSFDKNLYRQLISYPQ R L G I K S 0 0 3 0 1 0 3 2 1 3 2 1 0 1 1 0 0 0 0 2 0 0 20 0 2294.1729 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RFJ8 B4DLA6 157 176 MCM4 DNA replication licensing factor MCM4 yes no 3 1.4567E-06 57.989 2 2 0.90495 0.81979 35.539 4 Median 1.1178 1.1411 19.063 2 0 Median 0.78864 0.63869 7.5952 2 0 Median 43165000 22859000 20306000 26435000 13183000 13251000 16731000 9675700 7055100 7887 235 8069 20869;20870;20871;20872 32744;32745;32746;32747;32748;32749 32745 6 LGEIVTTIPTIGFNVETVEYK GLDAAGKTTILYKLKLGEIVTTIPTIGFNV TIPTIGFNVETVEYKNICFTVWDVGGQDRI K L G Y K N 0 0 1 0 0 0 3 2 0 3 1 1 0 1 1 0 4 0 1 3 0 0 21 0 2322.2359 C9J1Z8;A4D0Z3;B4DLJ3;P84085;B4DEB9;F5H0C7;B4DJC8;P18085;C9JPM4;A0A024R3Q3;A0A024R0Y6;F5H423;P84077;P61204 P18085 39 59 ARF5;ARF3;ARF4;ARF1 ADP-ribosylation factor 5;ADP-ribosylation factor 4;ADP-ribosylation factor 1;ADP-ribosylation factor 3 no no 2 0.0016902 33.685 3 3.0545 3.3699 10.907 2 Median 3.0545 3.3699 10.907 2 0 Median NaN NaN NaN 0 0 Median 138880000 32759000 106120000 138880000 32759000 106120000 0 0 0 7888 1498;660;62 8070 20873;20874;20875 32750;32751;32752;32753;32754 32753 5 LGELLGHPSFQVK YKVWMRHRYHSCCNRLGELLGHPSFQVKEL NRLGELLGHPSFQVKELALSALLKFVQLEG R L G V K E 0 0 0 0 0 1 1 2 1 0 3 1 0 1 1 1 0 0 0 1 0 0 13 0 1423.7823 Q9BVI4;F5H303 Q9BVI4 103 115 NOC4L Nucleolar complex protein 4 homolog yes no 3 3.7813E-05 77.644 2 2 1.1655 1.2751 9.1783 2 Median 1.1655 1.2751 9.1783 2 0 Median NaN NaN NaN 0 0 Median 91746000 45294000 46452000 83569000 37117000 46452000 8177200 8177200 0 7889 2007 8071 20876;20877;20878;20879 32755;32756;32757;32758;32759 32757 5 LGEMWSEQSAK KSEHPGLSIGDTAKKLGEMWSEQSAKDKQP TAKKLGEMWSEQSAKDKQPYEQKAAKLKEK K L G A K D 1 0 0 0 0 1 2 1 0 0 1 1 1 0 0 2 0 1 0 0 0 0 11 0 1264.5758 Q5U071;P26583 Q5U071 129 139 HMGB2 High mobility group protein B2 yes no 2 0.00022547 88.495 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18165000 18165000 0 18165000 18165000 0 0 0 0 7890 1521 8072 20880;20881 32760;32761 32761 1286 2 LGESLQSAER EGQKNIRLLRTELQKLGESLQSAERACCHS TELQKLGESLQSAERACCHSTGAGKLRQAL K L G E R A 1 1 0 0 0 1 2 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 10 0 1088.5462 O95235 O95235 751 760 KIF20A Kinesin-like protein KIF20A yes yes 2 0.00042037 87.149 2 1.1503 0.94266 0.93267 2 Median NaN NaN NaN 0 0 Median 1.1503 0.94266 0.93267 2 0 Median 28045000 12813000 15233000 0 0 0 28045000 12813000 15233000 7891 1421 8073 20882;20883 32762;32763;32764 32764 3 LGEVPYK LHSRDTWLKKARVVRLGEVPYKMVKGFSNR LKKARVVRLGEVPYKMVKGFSNRARKARLA R L G Y K M 0 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 7 0 804.43815 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPK7;D2CPK0;D2CPJ2;D2CPI8 A0A024R2M8 699 705 XPC DNA repair protein complementing XP-C cells no no 2 0.053301 53.554 1 0.88308 0.70475 NaN 1 Median NaN NaN NaN 0 0 Median 0.88308 0.70475 NaN 1 0 Median 6901800 3797400 3104400 0 0 0 6901800 3797400 3104400 7892 118;1184 8074 20884 32765 32765 1 LGEWVGLCK AEHQINLIKVDDNKKLGEWVGLCKIDREGK VDDNKKLGEWVGLCKIDREGKPRKVVGCSC K L G C K I 0 0 0 0 1 0 1 2 0 0 2 1 0 0 0 0 0 1 0 1 0 0 9 0 1060.5376 P25398 P25398 85 93 RPS12 40S ribosomal protein S12 yes yes 2 0.00033612 116.25 2 1.2363 1.3667 1.4516 2 Median 1.2363 1.3667 1.4516 2 0 Median NaN NaN NaN 0 0 Median 103660000 45049000 58608000 103660000 45049000 58608000 0 0 0 7893 1515 8075 20885;20886 32766;32767;32768;32769 32769 4 LGEYGFQNALIVR EPQNLIKQNCDQFEKLGEYGFQNALIVRYT EKLGEYGFQNALIVRYTRKVPQVSTPTLVE K L G V R Y 1 1 1 0 0 1 1 2 0 1 2 0 0 1 0 0 0 0 1 1 0 0 13 0 1478.7882 CON__P02769 CON__P02769 421 433 yes yes 2 0.00030715 87.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3784000 3784000 0 0 0 0 3784000 3784000 0 + 7894 1153 8076 20887 32770 32770 1 LGFAGLVQEISFGTTK GGRIVPRFSELTAEKLGFAGLVQEISFGTT GFAGLVQEISFGTTKDKMLVIEQCKNSRAV K L G T K D 1 0 0 0 0 1 1 3 0 1 2 1 0 2 0 1 2 0 0 1 0 0 16 0 1666.893 B4DE30;E7ENZ3;B4DYC8;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;Q96GI1;B4DX08;B4DZY9 B4DE30 278 293 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 2 3.665E-12 117.98 2 4.3627 4.5604 2.878 2 Median 4.3627 4.5604 2.878 2 0 Median NaN NaN NaN 0 0 Median 35494000 7192500 28301000 35494000 7192500 28301000 0 0 0 7895 960 8077 20888;20889 32771;32772;32773;32774;32775 32775 5 LGFATSSDVIEMK LQMDELKCRKRVLRRLGFATSSDVIEMKGR RRLGFATSSDVIEMKGRVACEISSADELLL R L G M K G 1 0 0 1 0 0 1 1 0 1 1 1 1 1 0 2 1 0 0 1 0 0 13 0 1396.6908 P42285;A8K6I4;B4E3M6 P42285 861 873 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.00084492 67.93 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6642600 0 6642600 6642600 0 6642600 0 0 0 7896 1563 8078 20890 32776 32776 1318 1 LGFHLPLEVAYQR LLDAQLATGGIVDPRLGFHLPLEVAYQRGY PRLGFHLPLEVAYQRGYLNKDTHDQLSEPS R L G Q R G 1 1 0 0 0 1 1 1 1 0 3 0 0 1 1 0 0 0 1 1 0 0 13 0 1541.8354 Q15149;D3DWL0;Q96IE3 Q15149 3951 3963 PLEC;PLEC1 Plectin yes no 3 3.8925E-05 80.245 2 2 2.2182 2.0707 8.1089 3 Median 1.7866 2.0707 NaN 1 0 Median 2.34 1.9554 10.47 2 0 Median 116070000 30187000 85883000 98166000 24873000 73293000 17905000 5314700 12590000 7897 1754 8079 20891;20892;20893;20894 32777;32778;32779;32780;32781;32782 32782 6 LGFSEVELVQMVVDGVK TAAVGGVFDVSNADRLGFSEVELVQMVVDG FSEVELVQMVVDGVKLLIEMEQRLEQGQAI R L G V K L 0 0 0 1 0 1 2 2 0 0 2 1 1 1 0 1 0 0 0 5 0 0 17 0 1847.9703 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;H0YJG0 V9HWH2 342 358 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 3.0331E-07 84.365 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9230600 0 9230600 9230600 0 9230600 0 0 0 7898 557 8080 20895;20896 32783;32784;32785 32784 414 3 LGGAVLSFSEATSSVQK VSTRTSSSFAAAMARLGGAVLSFSEATSSV GAVLSFSEATSSVQKGESLADSVQTMSCYA R L G Q K G 2 0 0 0 0 1 1 2 0 0 2 1 0 1 0 4 1 0 0 2 0 0 17 0 1679.873 Q53SY7;F8VPD4;P27708;H7C2E4 Q53SY7 1913 1929 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 7.3345E-05 96.067 2 0.88924 0.94318 10.897 2 Median 0.88924 0.94318 10.897 2 0 Median NaN NaN NaN 0 0 Median 34668000 15659000 19009000 34668000 15659000 19009000 0 0 0 7899 1259 8081 20897;20898 32786;32787;32788;32789 32787 4 LGGEVSCLVAGTK SLAPITLNTITAATRLGGEVSCLVAGTKCD TRLGGEVSCLVAGTKCDKVAQDLCKVAGIA R L G T K C 1 0 0 0 1 0 1 3 0 0 2 1 0 0 0 1 1 0 0 2 0 0 13 0 1289.6649 A0A0S2Z3L0;P13804;A0A0S2Z3M4;H0YKF0;H0YLU7;J3KN60 A0A0S2Z3L0 47 59 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 3.5614E-06 103.08 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20355000 0 20355000 20355000 0 20355000 0 0 0 7900 553 8082 20899;20900 32790;32791 32790 2 LGGFGSK AKKPKPKKVAPLKIKLGGFGSKRKRSSSED KVAPLKIKLGGFGSKRKRSSSEDDDLDVES K L G S K R 0 0 0 0 0 0 0 3 0 0 1 1 0 1 0 1 0 0 0 0 0 0 7 0 664.35443 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;F5H6N4;Q05CG6 F5GWX5 291 297 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.043207 58.194 1 0.71442 0.77009 NaN 1 Median 0.71442 0.77009 NaN 1 0 Median NaN NaN NaN 0 0 Median 41289000 25302000 15987000 41289000 25302000 15987000 0 0 0 7901 515 8083 20901 32792 32792 1 LGGHGPSFPLK GKEDGSGDRGDGPFRLGGHGPSFPLKGITE GPFRLGGHGPSFPLKGITEQQKEGLEIVKM R L G L K G 0 0 0 0 0 0 0 3 1 0 2 1 0 1 2 1 0 0 0 0 0 0 11 0 1108.6029 P13010;Q53T09 P13010 185 195 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 2.7317E-05 102.07 3 1 0.35221 0.41951 28.069 4 Linear 0.35515 0.41444 17.911 3 0 Plateau 0.28355 0.22433 NaN 1 0 Median 462800000 341440000 121360000 456600000 336960000 119640000 6197400 4474500 1722900 7902 1476 8084 20902;20903;20904;20905 32793;32794;32795;32796;32797;32798 32794 6 LGGIGQFLAK RTPLHEIALSIKLLRLGGIGQFLAKAIEPP IKLLRLGGIGQFLAKAIEPPPLDAVIEAEH R L G A K A 1 0 0 0 0 1 0 3 0 1 2 1 0 1 0 0 0 0 0 0 0 0 10 0 1002.5862 Q08211;B3KU66 Q08211 810 819 DHX9 ATP-dependent RNA helicase A yes no 2 0.006286 67.169 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16447000 0 16447000 0 0 0 16447000 0 16447000 7903 1691 8085 20906;20907;20908 32799;32800;32801 32801 3 LGGIPVGVVAVETR IMQPWAQTVVVGRARLGGIPVGVVAVETRT RLGGIPVGVVAVETRTVELSIPADPANLDS R L G T R T 1 1 0 0 0 0 1 3 0 1 1 0 0 0 1 0 1 0 0 4 0 0 14 0 1365.798 A0A024R0Y2;B2ZZ90;Q13085;Q7Z5W8;Q59FY4;B4DIG6;B4DIW1;B4DWK9;B4DIR2 A0A024R0Y2 1900 1913 hCG_30204;ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.0077958 39.785 1 1.3933 1.3847 NaN 1 Median 1.3933 1.3847 NaN 1 0 Median NaN NaN NaN 0 0 Median 7478400 3075900 4402500 7478400 3075900 4402500 0 0 0 7904 60 8086 20909 32802 32802 1 LGGLRPESPESLTSVSR ______________________________ GLRPESPESLTSVSRTRRALVEFESNPEET R L G S R T 0 2 0 0 0 0 2 2 0 0 3 0 0 0 2 4 1 0 0 1 0 0 17 1 1783.9428 Q9H6F5;Q6ZW18;H0YG79 Q9H6F5 11 27 CCDC86 Coiled-coil domain-containing protein 86 yes no 3 7.3081E-05 54.004 1 0.50816 0.55228 NaN 1 Median 0.50816 0.55228 NaN 1 0 Median NaN NaN NaN 0 0 Median 41742000 25984000 15758000 41742000 25984000 15758000 0 0 0 7905 2037 8087 20910 32803 32803 1 LGGLTQAPGNPVLAVQINQDK ______________________________ APGNPVLAVQINQDKNFAFLEFRSVDETTQ R L G D K N 2 0 2 1 0 3 0 3 0 1 3 1 0 0 2 0 1 0 0 2 0 0 21 0 2132.159 K7ENG2;B5BU25;P26368 K7ENG2 11 31 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 1.0758E-07 67.115 2 2 0.95437 0.84713 49.648 4 Median 1.3406 1.3494 16.471 2 0 Median 0.72372 0.58078 4.0117 2 0 Median 45011000 23301000 21710000 33024000 16758000 16266000 11986000 6542700 5443500 7906 1074 8088 20911;20912;20913;20914 32804;32805;32806;32807;32808;32809;32810;32811 32807 8 LGGSAVISLEGKPL NCYEEVKDRCTLAEKLGGSAVISLEGKPL_ KLGGSAVISLEGKPL_______________ K L G P L - 1 0 0 0 0 0 1 3 0 1 3 1 0 0 1 2 0 0 0 1 0 0 14 1 1339.7711 G3V1A4;V9HWI5;E9PK25;P23528 G3V1A4 136 149 CFL1;HEL-S-15 Cofilin-1 yes no 2 0.00071038 79.86 2 1 5.0425 5.7347 22.104 3 Plateau 4.9923 5.583 3.7908 2 0 Median 4.6914 3.8179 NaN 1 0 Median 135440000 25583000 109860000 128470000 24272000 104190000 6977900 1310400 5667500 7907 1242 8089 20915;20916;20917 32812;32813;32814;32815;32816 32812 5 LGGSLADSYLDEGFLLDK LKGSGNLEAIHIIKKLGGSLADSYLDEGFL SLADSYLDEGFLLDKKIGVNQPKRIENAKI K L G D K K 1 0 0 3 0 0 1 3 0 0 5 1 0 1 0 2 0 0 1 0 0 0 18 0 1911.9466 F8VQ14;F5GWF6;V9HW96;P78371;B7Z4R3 F8VQ14 205 222 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 2 1.1002E-12 98.531 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25162000 0 25162000 25162000 0 25162000 0 0 0 7908 1255 8090 20918;20919 32817;32818 32817 2 LGGTIDDCELVEGLVLTQK TATSVDLRDIKIVKKLGGTIDDCELVEGLV IDDCELVEGLVLTQKVSNSGITRVEKAKIG K L G Q K V 0 0 0 2 1 1 2 3 0 1 4 1 0 0 0 0 2 0 0 2 0 0 19 0 2059.0507 B7Z9L0;A8K3C3;P50991;B7Z2F4;B7Z2Z8 B7Z9L0 158 176 CCT4 T-complex protein 1 subunit delta yes no 2 3.1863E-05 55.213 1 1.2173 1.2141 NaN 1 Median 1.2173 1.2141 NaN 1 0 Median NaN NaN NaN 0 0 Median 6466900 2394400 4072500 6466900 2394400 4072500 0 0 0 7909 721 8091 20920 32819 32819 1 LGHELQQAGLK QLQKENKELRAEAERLGHELQQAGLKTKEA EAERLGHELQQAGLKTKEAEQTCRHLTAQV R L G L K T 1 0 0 0 0 2 1 2 1 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1192.6564 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1641 1651 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 7.8974E-05 98.044 1 2 1.7375 1.3618 31.226 3 Median 0.80129 0.8229 NaN 1 0 Median 1.7789 1.4088 4.7961 2 0 Median 24491000 13333000 11159000 17818000 11073000 6744400 6673500 2259200 4414300 7910 186;1747 8092 20921;20922;20923 32820;32821;32822;32823 32820 4 LGHSFSLVGNK LKAKTPKNGPPPCPRLGHSFSLVGNKCYLF PCPRLGHSFSLVGNKCYLFGGLANDSEDPK R L G N K C 0 0 1 0 0 0 0 2 1 0 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1157.6193 A6NEM2;P51610;Q05C05 A6NEM2 138 148 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 3 0.0013295 43.419 1 0.78216 0.82491 NaN 1 Median 0.78216 0.82491 NaN 1 0 Median NaN NaN NaN 0 0 Median 35334000 18303000 17031000 35334000 18303000 17031000 0 0 0 7911 680 8093 20924 32824;32825 32824 2 LGHTDILVGVK ETDVVSNTSGSARVKLGHTDILVGVKAEMG ARVKLGHTDILVGVKAEMGTPKLEKPNEGY K L G V K A 0 0 0 1 0 0 0 2 1 1 2 1 0 0 0 0 1 0 0 2 0 0 11 0 1150.671 B2RDZ9;A0A024R2P7;Q15024;B4DIU0 B2RDZ9 53 63 EXOSC7 Exosome complex component RRP42 yes no 3 0.0027153 50.108 2 0.91577 0.95689 6.8433 2 Median 0.91577 0.95689 6.8433 2 0 Median NaN NaN NaN 0 0 Median 49197000 25352000 23845000 49197000 25352000 23845000 0 0 0 7912 120 8094 20925;20926 32826;32827;32828;32829 32827 4 LGIHEDSQNRK ENYKKFYEQFSKNIKLGIHEDSQNRKKLSE KNIKLGIHEDSQNRKKLSELLRYYTSASGD K L G R K K 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1295.6582 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 447 457 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 0.022369 29.299 1 3.2799 3.6369 NaN 1 Median 3.2799 3.6369 NaN 1 0 Median NaN NaN NaN 0 0 Median 9554500 2225300 7329200 9554500 2225300 7329200 0 0 0 7913 1348 8095 20927 32830 32830 1 LGIHEDSTNR ENYKKFYEAFSKNLKLGIHEDSTNRRRLSE SKNLKLGIHEDSTNRRRLSELLRYHTSQSG K L G N R R 0 1 1 1 0 0 1 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1140.5523 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 B4DMA2 401 410 HSP90AB1 Heat shock protein HSP 90-beta yes no 2;3 1.1584E-51 201.21 4 3 2.0654 2.4415 40.635 5 Linear 2.1536 2.5492 16.103 3 0 Plateau 1.3432 1.1227 4.1432 2 0 Median 1148200000 314890000 833300000 1104900000 296920000 807950000 43311000 17964000 25347000 7914 379 8096 20928;20929;20930;20931;20932;20933;20934 32831;32832;32833;32834;32835;32836;32837;32838;32839;32840;32841 32836 11 LGIHEDSTNRR ENYKKFYEAFSKNLKLGIHEDSTNRRRLSE KNLKLGIHEDSTNRRRLSELLRYHTSQSGD K L G R R R 0 2 1 1 0 0 1 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 11 1 1296.6535 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 B4DMA2 401 411 HSP90AB1 Heat shock protein HSP 90-beta yes no 3 8.1621E-05 73.781 2 1.9777 1.9553 NaN 1 Median 1.9777 1.9553 NaN 1 0 Median NaN NaN NaN 0 0 Median 17103000 2658300 14444000 17103000 2658300 14444000 0 0 0 7915 379 8097 20935;20936 32842;32843;32844;32845 32844 4 LGINDIEGQR SGEWIWESLFHPPRKLGINDIEGQRVLQIA HPPRKLGINDIEGQRVLQIAVILRNLSFEE K L G Q R V 0 1 1 1 0 1 1 2 0 2 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1113.5778 Q68CP9;F8WCU9 Q68CP9 276 285 ARID2 AT-rich interactive domain-containing protein 2 yes no 2 0.019613 54.722 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4120900 4120900 0 4120900 4120900 0 0 0 0 7916 1839 8098 20937 32846 32846 1 LGIPQNTILVQTLLR MQYKYLLFSLHAIAKLGIPQNTILVQTLLR LGIPQNTILVQTLLRVTQERINECDEICLS K L G L R V 0 1 1 0 0 2 0 1 0 2 4 0 0 0 1 0 2 0 0 1 0 0 15 0 1678.0141 B3KMB8;A0A024R419;Q9NYY8 B3KMB8 242 256 KIAA0971;FASTKD2 FAST kinase domain-containing protein 2 yes no 2 0.00063677 53.237 2 1.0658 1.092 11.94 2 Median 1.0658 1.092 11.94 2 0 Median NaN NaN NaN 0 0 Median 11500000 5173200 6327200 11500000 5173200 6327200 0 0 0 7917 147 8099 20938;20939 32847;32848;32849 32848 3 LGIQGSYFCSQECFK GCSSEAKLQCPTCIKLGIQGSYFCSQECFK LGIQGSYFCSQECFKGSWATHKLLHKKAKD K L G F K G 0 0 0 0 2 2 1 2 0 1 1 1 0 2 0 2 0 0 1 0 0 0 15 0 1822.8018 P53582;H0YAI3 P53582 28 42 METAP1 Methionine aminopeptidase 1 yes no 2 0.0005851 54.343 1 1 0.43992 0.35805 NaN 1 Median NaN NaN NaN 0 0 Median 0.43992 0.35805 NaN 1 0 Median 7217500 4572500 2645000 0 0 0 7217500 4572500 2645000 7918 1605 8100 20940;20941 32850;32851 32851 2 LGIQLDFEK EIAKKRLEFENQKTRLGIQLDFEKNQLKED ENQKTRLGIQLDFEKNQLKEDQDKVHMWEQ R L G E K N 0 0 0 1 0 1 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1061.5757 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8 Q14683 817 825 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0023218 81.296 2 2 1.1887 0.947 11.949 3 Median 0.88766 0.93537 NaN 1 0 Median 1.302 1.0469 14.178 2 0 Median 59879000 48392000 11487000 54097000 45923000 8174300 5782600 2469900 3312700 7919 1739 8101 20942;20943;20944;20945 32852;32853;32854;32855;32856 32852 5 LGIQQLK YERVTTINQEIQKIKLGIQQLKDAAEREKL NQEIQKIKLGIQQLKDAAEREKLKSQEIFL K L G L K D 0 0 0 0 0 2 0 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 798.49634 A0A024R8Y0;Q9BZD4;E9PQC4 A0A024R8Y0 403 409 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 0.026863 81.1 1 0.85726 0.84908 NaN 1 Median 0.85726 0.84908 NaN 1 0 Median NaN NaN NaN 0 0 Median 25842000 12696000 13146000 25842000 12696000 13146000 0 0 0 7920 264 8102 20946 32857;32858 32858 2 LGISDVAWSSDSNLLVSASDDK GAYDGKFEKTISGHKLGISDVAWSSDSNLL WSSDSNLLVSASDDKTLKIWDVSSGKCLKT K L G D K T 2 0 1 4 0 0 0 1 0 1 3 1 0 0 0 6 0 1 0 2 0 0 22 0 2278.0965 P61964 P61964 88 109 WDR5 WD repeat-containing protein 5 yes yes 2 0.0045516 38.028 2 0.52284 0.53657 12.217 2 Median 0.52284 0.53657 12.217 2 0 Median NaN NaN NaN 0 0 Median 20366000 11271000 9094700 20366000 11271000 9094700 0 0 0 7921 1630 8103 20947;20948 32859;32860 32860 2 LGISFLEDLTDR KRQETVTDLAAAGKKLGISFLEDLTDRNFS GKKLGISFLEDLTDRNFSNSPGPYVFCITE K L G D R N 0 1 0 2 0 0 1 1 0 1 3 0 0 1 0 1 1 0 0 0 0 0 12 0 1377.714 D6RJE1;D6RE69;D6R9I1;A0A1B0GV48;D6RBC4;B4DYR8;Q8NAP3 D6RJE1 114 125 ZBTB38 Zinc finger and BTB domain-containing protein 38 yes no 2 0.013875 52.79 1 1.0807 1.1507 NaN 1 Median 1.0807 1.1507 NaN 1 0 Median NaN NaN NaN 0 0 Median 3668900 1710200 1958700 3668900 1710200 1958700 0 0 0 7922 632 8104 20949 32861 32861 1 LGITQLR TLGHLMGVLREFFTKLGITQLRFKPAYNPY VLREFFTKLGITQLRFKPAYNPYTEPSMEV K L G L R F 0 1 0 0 0 1 0 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 7 0 799.49159 Q6IBR2;K7ER00;Q9Y285;K7EPH2 Q6IBR2 398 404 FARSLA;FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 0.036877 64.803 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5481500 0 5481500 5481500 0 5481500 0 0 0 7923 1347 8105 20950 32862 32862 1 LGIYDADGDGDFDVDDAK VVWFDLVDYEEVLGKLGIYDADGDGDFDVD YDADGDGDFDVDDAKVLLGLKERSTSEPAV K L G A K V 2 0 0 7 0 0 0 3 0 1 1 1 0 1 0 0 0 0 1 1 0 0 18 0 1899.801 Q12797;E5RHJ2;E5RHK2;G3XAN5;E5RG29;B7ZM96;B4DQ07;A0A0A0MSK8;Q6PJH4;E5RG56;B3GQE5;B8Y0L3 Q12797 87 104 ASPH Aspartyl/asparaginyl beta-hydroxylase yes no 2 9.7835E-05 67.964 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7924 1700 8106 20951 32863 32863 1 LGLAPQIQDLYGK RCIYCIHALSLYLFKLGLAPQIQDLYGKVD FKLGLAPQIQDLYGKVDFTEEEINNMKTEL K L G G K V 1 0 0 1 0 2 0 2 0 1 3 1 0 0 1 0 0 0 1 0 0 0 13 0 1414.782 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4;H0YKA5;Q5FWG8;Q05DN7 A4QPB0 162 174 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0017878 56.404 2 1.4148 1.4089 12.199 2 Median 1.4148 1.4089 12.199 2 0 Median NaN NaN NaN 0 0 Median 22032000 9438200 12594000 22032000 9438200 12594000 0 0 0 7925 352 8107 20952;20953 32864;32865;32866 32866 3 LGLDYEER LSRPNAQELPSMYQRLGLDYEERVLPSIVN LPSMYQRLGLDYEERVLPSIVNEVLKSVVA R L G E R V 0 1 0 1 0 0 2 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 993.47673 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 124 131 PHB2 Prohibitin-2 yes no 2 0.0036078 96.253 2 2 1.8761 1.8394 8.4853 4 Median 1.4654 1.7137 2.8907 2 0 Median 2.3864 1.9737 2.8465 2 0 Median 595720000 240090000 355630000 563570000 229790000 333780000 32150000 10303000 21847000 7926 1328 8108 20954;20955;20956;20957 32867;32868;32869;32870;32871;32872 32869 6 LGLEALAANHQQLFTDGR ALETERVRANARALRLGLEALAANHQQLFT EALAANHQQLFTDGRSWGSFTVLDNSAWYQ R L G G R S 3 1 1 1 0 2 1 2 1 0 4 0 0 1 0 0 1 0 0 0 0 0 18 0 1953.0068 H0YHS6;Q9Y2Z4 H0YHS6 120 137 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 3 0.0019188 42.095 2 2 1.2671 1.1747 43.676 4 Median 1.6808 1.6997 4.0768 2 0 Median 0.9466 0.80051 6.0702 2 0 Median 43031000 18775000 24256000 35866000 15123000 20743000 7165100 3651900 3513200 7927 1293 8109 20958;20959;20960;20961 32873;32874;32875;32876 32873 3 LGLEFFDQPAVPLAR YRSIYFSSPKGHLTRLGLEFFDQPAVPLAR LGLEFFDQPAVPLARAFLGQVLVRRLPNGT R L G A R A 2 1 0 1 0 1 1 1 0 0 3 0 0 2 2 0 0 0 0 1 0 0 15 0 1671.8984 A2IDA3;Q1W6H1;P29372 A2IDA3 69 83 MPG DNA-3-methyladenine glycosylase yes no 2 0.00022114 65.5 2 0.71095 0.72297 2.6323 2 Median 0.71095 0.72297 2.6323 2 0 Median NaN NaN NaN 0 0 Median 23922000 13964000 9958000 23922000 13964000 9958000 0 0 0 7928 651 8110 20962;20963 32877;32878 32877 2 LGLEIR RLKRLQKSADLYKDRLGLEIRKIYGEKLQF KSADLYKDRLGLEIRKIYGEKLQFIFTNID R L G I R K 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 6 0 699.42792 Q9HBM1 Q9HBM1 142 147 SPC25 Kinetochore protein Spc25 yes yes 2 0.03675 120.76 1 0.91113 0.91586 NaN 1 Median 0.91113 0.91586 NaN 1 0 Median NaN NaN NaN 0 0 Median 11108000 5909200 5198700 11108000 5909200 5198700 0 0 0 7929 2050 8111 20964 32879 32879 1 LGLELGK SGSSHQDLSQKIADRLGLELGKVVTKKFSN LSQKIADRLGLELGKVVTKKFSNQETCVEI R L G G K V 0 0 0 0 0 0 1 2 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 728.44324 Q53FW2;P60891;B1ALA7;A0A140VK41;P11908;B2R860;D3YTJ7;A6NMS2 Q53FW2 23 29 PRPS1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2 no no 2 0.026711 76.847 1 2.8275 2.8612 NaN 1 Median 2.8275 2.8612 NaN 1 0 Median NaN NaN NaN 0 0 Median 28994000 6484300 22510000 28994000 6484300 22510000 0 0 0 7930 1626;616 8112 20965 32880;32881 32880 2 LGLGEGAEEK SEGKAYSLGRAEYGRLGLGEGAEEKSIPTL AEYGRLGLGEGAEEKSIPTLISRLPAVSSV R L G E K S 1 0 0 0 0 0 3 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1001.5029 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69 Q5T081 326 335 RCC1 Regulator of chromosome condensation yes no 2 0.028805 43.282 1 0.91571 0.71013 NaN 1 Median NaN NaN NaN 0 0 Median 0.91571 0.71013 NaN 1 0 Median 13902000 7374900 6527200 0 0 0 13902000 7374900 6527200 7931 550 8113 20966 32882 32882 1 LGLGGNAPVSIPQQSQSVK VKSVGQGYSVGQSMRLGLGGNAPVSIPQQS GNAPVSIPQQSQSVKQLLPSGNGRSYGLGS R L G V K Q 1 0 1 0 0 3 0 3 0 1 2 1 0 0 2 3 0 0 0 2 0 0 19 0 1879.0163 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 349 367 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 8.763E-17 118.58 2 1 0.70844 0.79446 2.6315 2 Median 0.70844 0.79446 2.6315 2 0 Median NaN NaN NaN 0 0 Median 143020000 75739000 67285000 129610000 75739000 53875000 13410000 0 13410000 7932 878 8114 20967;20968;20969 32883;32884;32885;32886;32887 32884 5 LGLGLEFQA SALLDGKNVNAGGHKLGLGLEFQA______ NAGGHKLGLGLEFQA_______________ K L G Q A - 1 0 0 0 0 1 1 2 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 946.51238 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 275 283 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 1 0.0046471 79.809 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 168120000 0 0 168120000 0 0 0 0 0 7933 639 8115 20970;20971 32888;32889 32888 2 LGLHVTPSNVDQVSTPPAAK AGTRLQAFFHIQAQKLGLHVTPSNVDQVST TPSNVDQVSTPPAAKKSRI___________ K L G A K K 2 0 1 1 0 1 0 1 1 0 2 1 0 0 3 2 2 0 0 3 0 0 20 0 2030.0797 D3DS96;Q9NRL2;B3KND8 D3DS96 1532 1551 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 3 2.4217E-06 79.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7934 1187 8116 20972 32890 32890 1 LGLIPIHADPR YNNTSIVQDEILAHRLGLIPIHADPRLFEY LAHRLGLIPIHADPRLFEYRNQGDEEGTEI R L G P R L 1 1 0 1 0 0 0 1 1 2 2 0 0 0 2 0 0 0 0 0 0 0 11 0 1200.6979 Q96HT3;O15160;D6RDJ3;H0Y723;B4DEC2;E7EQB9 Q96HT3 102 112 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 3 0.041187 23.749 1 1.0016 0.99371 NaN 1 Median 1.0016 0.99371 NaN 1 0 Median NaN NaN NaN 0 0 Median 15925000 9133700 6791400 15925000 9133700 6791400 0 0 0 7935 1376 8117 20973 32891 32891 1 LGLIPLISDDIVDK DANSSVLHDEFIAHRLGLIPLISDDIVDKL RLGLIPLISDDIVDKLQYSRDCTFEEFCPE R L G D K L 0 0 0 3 0 0 0 1 0 3 3 1 0 0 1 1 0 0 0 1 0 0 14 0 1509.8654 B7Z377;Q6FGR6;B7Z6D1;P19387 B7Z377 68 81 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes no 2 7.9447E-05 88.596 2 1.027 1.0399 11.181 2 Median 1.027 1.0399 11.181 2 0 Median NaN NaN NaN 0 0 Median 45630000 22016000 23614000 45630000 22016000 23614000 0 0 0 7936 1087 8118 20974;20975 32892;32893;32894;32895 32894 4 LGLLDNHSSEFNVTR VPKHVMDVVDEELSKLGLLDNHSSEFNVTR LGLLDNHSSEFNVTRNYLDWLTSIPWGKYS K L G T R N 0 1 2 1 0 0 1 1 1 0 3 0 0 1 0 2 1 0 0 1 0 0 15 0 1700.8482 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;A4VCH6;K7ER27;K7ER56 K7EJE8 315 329 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 3 3.6285E-13 113.59 1 1 2.5668 2.4782 53.348 2 Median 3.5044 3.6138 NaN 1 0 Median 1.8801 1.6994 NaN 1 0 Median 26433000 8389200 18043000 24308000 7687900 16620000 2124300 701280 1423100 7937 946 8119 20976;20977 32896;32897 32896 2 LGLLDTQTSQVLTAVDK DPVHGVHLPQAAACRLGLLDTQTSQVLTAV LLDTQTSQVLTAVDKDNKFFFDPSARDQVT R L G D K D 1 0 0 2 0 2 0 1 0 0 4 1 0 0 0 1 3 0 0 2 0 0 17 0 1800.9833 A0A075B730;A0A087X1U6;P58107 A0A075B730 1357 1373 EPPK1 Epiplakin no no 2 6.1943E-11 90.759 1 1 2.526 2.3811 39.557 2 Median 1.6628 1.8001 NaN 1 0 Median 3.8371 3.1496 NaN 1 0 Median 31229000 10347000 20882000 22060000 7835200 14224000 9169700 2511800 6657900 7938 397;1622 8120 20978;20979 32898;32899 32898 1 LGLLGGK RKKLRGKKMAPLKIKLGLLGGKRKKGGSYV KMAPLKIKLGLLGGKRKKGGSYVFQSDEGP K L G G K R 0 0 0 0 0 0 0 3 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 656.42211 Q12873;H7C2H0;I3L1I4 Q12873 296 302 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.040128 59.609 1 0.54217 0.55621 NaN 1 Median 0.54217 0.55621 NaN 1 0 Median NaN NaN NaN 0 0 Median 17712000 11184000 6528700 17712000 11184000 6528700 0 0 0 7939 1701 8121 20980 32900 32900 1 LGLLGLPAPK SYVKQMERESREHLRLGLLGLPAPKNDFEI REHLRLGLLGLPAPKNDFEIVLPENAEKEL R L G P K N 1 0 0 0 0 0 0 2 0 0 4 1 0 0 2 0 0 0 0 0 0 0 10 0 977.62735 B4DSH1;B3KY60;Q99459 B4DSH1 451 460 CDC5L Cell division cycle 5-like protein yes no 2 0.010576 53.166 2 0.97317 0.98522 1.7346 2 Median 0.97317 0.98522 1.7346 2 0 Median NaN NaN NaN 0 0 Median 23078000 12435000 10643000 23078000 12435000 10643000 0 0 0 7940 957 8122 20981;20982 32901;32902 32901 2 LGLNLPAGR KSKNGGRCLREKLDRLGLNLPAGRRKAANV REKLDRLGLNLPAGRRKAANVTLLTSLVEG R L G G R R 1 1 1 0 0 0 0 2 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 909.5396 Q7Z6R9 Q7Z6R9 272 280 TFAP2D Transcription factor AP-2-delta yes yes 2 0.0015956 91.906 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7941 1881 8123 20983;20984;20985 32903;32904;32905 32905 3 LGLPGIPR MSSAQIVSATAIHNKLGLPGIPRPTFPGAP ATAIHNKLGLPGIPRPTFPGAPGFWPGMIQ K L G P R P 0 1 0 0 0 0 0 2 0 1 2 0 0 0 2 0 0 0 0 0 0 0 8 0 821.51232 H0YE88;P28347;E9PKB7;H0YEJ9;Q59EF3 H0YE88 140 147 TEAD1 Transcriptional enhancer factor TEF-1 yes no 2 0.0077998 81.381 1 0.58605 0.57599 NaN 1 Median 0.58605 0.57599 NaN 1 0 Median NaN NaN NaN 0 0 Median 13547000 8111800 5434900 13547000 8111800 5434900 0 0 0 7942 1291 8124 20986 32906;32907;32908 32906 3 LGLPPLTPEQQEALQK TDSIKMENGQSTAAKLGLPPLTPEQQEALQ GLPPLTPEQQEALQKAKKYAMEQSIKSVLV K L G Q K A 1 0 0 0 0 3 2 1 0 0 4 1 0 0 3 0 1 0 0 0 0 0 16 0 1760.9672 A0A0J9YYL3;A0A0J9YXJ8;A0A0J9YVP6;A0A0J9YXX5;Q9UHX1;E9PL19;E9PMU7;E9PN18;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1 A0A0J9YYL3 17 32 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.005972 52.693 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9778700 0 9778700 9778700 0 9778700 0 0 0 7943 537 8125 20987 32909 32909 1 LGLQSLR QDLPNAMAISEMTDKLGLQSLRNRTWYVQA AISEMTDKLGLQSLRNRTWYVQATCATQGT K L G L R N 0 1 0 0 0 1 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 785.47594 P18085;C9JAK5;U3KQF2 P18085 143 149 ARF4 ADP-ribosylation factor 4 yes no 2 0.011851 107.22 2 1 2.114 2.4455 36.159 3 Plateau 2.1436 2.4263 1.7444 2 0 Median 1.4511 1.2975 NaN 1 0 Median 117070000 36307000 80759000 114760000 35383000 79374000 2309000 923720 1385200 7944 1498 8126 20988;20989;20990 32910;32911;32912;32913;32914 32913 5 LGLTEIR RKKRGGRRYRKMKERLGLTEIRKQANRMSF RYRKMKERLGLTEIRKQANRMSFGEIEEDA R L G I R K 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 7 0 800.4756 B4DWW8;E7EVX8;Q8WWY3 B4DWW8 366 372 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 0.026953 83.614 2 1.4161 1.427 NaN 1 Median 1.4161 1.427 NaN 1 0 Median NaN NaN NaN 0 0 Median 14451000 4357500 10094000 14451000 4357500 10094000 0 0 0 7945 1046 8127 20991;20992 32915;32916;32917 32916 3 LGLVGVNLTLDGVK NLVVKPDQLIKRRGKLGLVGVNLTLDGVKS KLGLVGVNLTLDGVKSWLKPRLGQEATVGK K L G V K S 0 0 1 1 0 0 0 3 0 0 4 1 0 0 0 0 1 0 0 3 0 0 14 0 1396.829 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;K7ESG8 A0A024R1Y2 69 82 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 4.0499E-06 100.72 2 1.3315 1.4099 7.7288 2 Median 1.3315 1.4099 7.7288 2 0 Median NaN NaN NaN 0 0 Median 54465000 22542000 31924000 54465000 22542000 31924000 0 0 0 7946 89 8128 20993;20994 32918;32919;32920;32921 32921 4 LGLVIPSSGSGSGNQSIDR GNGQGEDRNLLYYSKLGLVIPSSGSGSGNQ IPSSGSGSGNQSIDRSGPLVKSLLRRSLSM K L G D R S 0 1 1 1 0 1 0 4 0 2 2 0 0 0 1 5 0 0 0 1 0 0 19 0 1842.9436 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 313 331 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 0.00011978 64.121 3 2 1.0308 0.8682 4.3858 2 Median NaN NaN NaN 0 0 Median 1.0308 0.8682 4.3858 2 0 Median 16836000 3167700 13668000 10425000 0 10425000 6410800 3167700 3243100 7947 2109 8129 20995;20996;20997;20998;20999 32922;32923;32924;32925;32926;32927 32923 6 LGMLSHLMR L G M R 0 1 0 0 0 0 0 1 1 0 3 0 2 0 0 1 0 0 0 0 0 0 9 0 1056.5572 REV__A6NES4 yes no 2 0.021262 52.636 3 0.69548 0.77139 1.4611 3 Plateau 0.69548 0.77139 1.4611 3 0 Plateau NaN NaN NaN 0 0 Median 190380000 114040000 76337000 190380000 114040000 76337000 0 0 0 + 7948 2163 8130 21000;21001;21002 32928;32929;32930;32931 32930 2007;2008 3 LGNDFHTNK VKKAARVIIEKYYTRLGNDFHTNKRVCEEI EKYYTRLGNDFHTNKRVCEEIAIIPSKKLR R L G N K R 0 0 2 1 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1044.4989 H0YN88;A0A075B716;P08708;H0YN73;H3BNC9 H0YN88 24 32 RPS17 40S ribosomal protein S17 yes no 2;3 1.2197E-34 197.81 4 1.0601 1.1544 9.418 4 Median 1.0601 1.1544 9.418 4 0 Median NaN NaN NaN 0 0 Median 236480000 113040000 123440000 236480000 113040000 123440000 0 0 0 7949 396 8131 21003;21004;21005;21006 32932;32933;32934;32935;32936;32937 32934 6 LGNGINIIVATPGR GLIMGGSNRSAEAQKLGNGINIIVATPGRL KLGNGINIIVATPGRLLDHMQNTPGFMYKN K L G G R L 1 1 2 0 0 0 0 3 0 3 1 0 0 0 1 0 1 0 0 1 0 0 14 0 1393.8041 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254 Q4ZG72 174 187 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 2.5389E-57 194.17 2 2 1.2062 1.1888 12.315 4 Median 0.9547 1.0927 5.5555 2 0 Median 1.536 1.3191 8.3362 2 0 Median 379900000 187110000 192790000 313890000 161430000 152460000 66016000 25681000 40335000 7950 303 8132 21007;21008;21009;21010 32938;32939;32940;32941;32942;32943;32944;32945 32941 8 LGNLFLNEDLEVK CQYLHRNRVIHRDLKLGNLFLNEDLEVKIG LKLGNLFLNEDLEVKIGDFGLATKVEYDGE K L G V K I 0 0 2 1 0 0 2 1 0 0 4 1 0 1 0 0 0 0 0 1 0 0 13 0 1502.7981 P53350;B2R841;B4E083;Q59GD0;Q58A51 P53350 179 191 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 0.0010174 59.542 1 0.74059 0.84646 NaN 1 Median 0.74059 0.84646 NaN 1 0 Median NaN NaN NaN 0 0 Median 182750000 108170000 74578000 182750000 108170000 74578000 0 0 0 7951 1604 8133 21011 32946 32946 1 LGNNCVFAPADVTSEK LLDLPNSGGEAQAKKLGNNCVFAPADVTSE GNNCVFAPADVTSEKDVQTALALAKGKFGR K L G E K D 2 0 2 1 1 0 1 1 0 0 1 1 0 1 1 1 1 0 0 2 0 0 16 0 1720.809 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 54 69 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 1.0638E-06 96.745 2 1 2.012 2.2648 42.873 3 Plateau 1.9697 2.1675 6.2089 2 0 Median 1.2662 1.0355 NaN 1 0 Median 100210000 35801000 64408000 95425000 33972000 61453000 4784400 1828800 2955600 7952 555 8134 21012;21013;21014 32947;32948;32949;32950 32948 4 LGNPIVPLNIR VPRDLPSWMKFLHGKLGNPIVPLNIRLFLA LHGKLGNPIVPLNIRLFLAKLVINTEEVFR K L G I R L 0 1 2 0 0 0 0 1 0 2 2 0 0 0 2 0 0 0 0 1 0 0 11 0 1204.7292 P78527 P78527 2133 2143 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.7121E-05 106.04 2 2 0.44356 0.43764 53.153 4 Median 0.61215 0.68897 1.3419 2 0 Median 0.31979 0.27456 3.1014 2 0 Median 264600000 174270000 90329000 204750000 128900000 75845000 59853000 45369000 14484000 7953 1665 8135 21015;21016;21017;21018 32951;32952;32953;32954;32955;32956;32957;32958 32957 8 LGNSCEFR SGKSPVTTLLECMHKLGNSCEFRLLSKEGP LLECMHKLGNSCEFRLLSKEGPAHEPKFQY K L G F R L 0 1 1 0 1 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 981.43381 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 626 633 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.014196 63.565 2 5.1156 5.4923 3.5722 2 Median 5.1156 5.4923 3.5722 2 0 Median NaN NaN NaN 0 0 Median 78278000 10882000 67396000 78278000 10882000 67396000 0 0 0 7954 5 8136 21019;21020 32959;32960 32959 2 LGNSLLR RRQSMAFSILNTPKKLGNSLLRRGASKKAL SILNTPKKLGNSLLRRGASKKALSKASPNT K L G L R R 0 1 1 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 771.46029 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 2045 2051 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0079269 128.48 1 0.66928 0.69578 NaN 1 Median 0.66928 0.69578 NaN 1 0 Median NaN NaN NaN 0 0 Median 38040000 20337000 17703000 38040000 20337000 17703000 0 0 0 7955 186;1747 8137 21021 32961 32961 1 LGNTTVICGVK NIGSISTADGSALVKLGNTTVICGVKAEFA ALVKLGNTTVICGVKAEFAAPSTDAPDKGY K L G V K A 0 0 1 0 1 0 0 2 0 1 1 1 0 0 0 0 2 0 0 2 0 0 11 0 1160.6223 Q96B26;Q5JXM0 Q96B26 53 63 EXOSC8;DKFZp564C0482 Exosome complex component RRP43 yes no 2 0.0011232 69.915 2 2 0.67959 0.63812 24.523 3 Median 0.62936 0.63812 NaN 1 0 Median 0.86979 0.68639 34.165 2 0 Median 20730000 12942000 7788300 12905000 8864300 4040900 7825200 4077800 3747400 7956 1959 8138 21022;21023;21024;21025 32962;32963;32964;32965 32963 4 LGNVNIDIIHR HKTENTYRFLTFAERLGNVNIDIIHRIDRT FAERLGNVNIDIIHRIDRTASYEEEVETYF R L G H R I 0 1 2 1 0 0 0 1 1 3 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1262.7095 O75691 O75691 23 33 UTP20 Small subunit processome component 20 homolog yes yes 3 0.052335 27.149 1 1.1792 1.2838 NaN 1 Median 1.1792 1.2838 NaN 1 0 Median NaN NaN NaN 0 0 Median 51068000 22522000 28546000 51068000 22522000 28546000 0 0 0 7957 1412 8139 21026 32966 32966 0 LGPASAADTGSEAKPGALAEGAAEPEPQR DCVERNERLELEAYRLGPASAADTGSEAKP PGALAEGAAEPEPQRHAGRIAFTDADDVAI R L G Q R H 8 1 0 1 0 1 4 4 0 0 2 1 0 0 4 2 1 0 0 0 0 0 29 1 2747.3362 Q9NYB0 Q9NYB0 101 129 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 3 0.018853 20.043 1 1.5403 1.3128 NaN 1 Median NaN NaN NaN 0 0 Median 1.5403 1.3128 NaN 1 0 Median 3022800 1219400 1803400 0 0 0 3022800 1219400 1803400 7958 2082 8140 21027 32967;32968 32967 2 LGPGGLDPVEVYESLPEELQK EKAMKEYEEEERKKRLGPGGLDPVEVYESL DPVEVYESLPEELQKCFDVKDVQMLQDAIS R L G Q K C 0 0 0 1 0 1 4 3 0 0 4 1 0 0 3 1 0 0 1 2 0 0 21 0 2268.1525 K7EQA9;Q6FG59;A0A024R7B7;Q16543;K7EIU0;A1L0W4 K7EQA9 193 213 CDC37;MBD5 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 0.010433 36.944 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9917100 0 9917100 9917100 0 9917100 0 0 0 7959 218 8141 21028;21029 32969;32970 32970 2 LGPGRPLPTFPTSECTSDVEPDTR GEFEIQAEDDARARKLGPGRPLPTFPTSEC FPTSECTSDVEPDTREMVRAQNKKKKKSGG K L G T R E 0 2 0 2 1 0 2 2 0 0 2 0 0 1 5 2 4 0 0 1 0 0 24 1 2628.249 Q8TDD1;H0YHZ9 Q8TDD1 59 82 DDX54 ATP-dependent RNA helicase DDX54 yes no 3 4.0353E-12 70.533 2 2 1.1727 1.1351 13.978 4 Median 0.91932 1.0266 1.7159 2 0 Median 1.4785 1.2962 6.2689 2 0 Median 122380000 57169000 65212000 94139000 45851000 48288000 28242000 11319000 16924000 7960 1933 8142 21030;21031;21032;21033 32971;32972;32973;32974;32975;32976;32977;32978 32977 8 LGPLLDILADSR LFPLLLRLLDPTSSRLGPLLDILADSRHLW SSRLGPLLDILADSRHLWSPFGLRSLAASS R L G S R H 1 1 0 2 0 0 0 1 0 1 4 0 0 0 1 1 0 0 0 0 0 0 12 0 1281.7293 Q58F09;Q13724;A8K9K4 Q58F09 709 720 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.00012005 94.616 2 2 0.94535 1.005 16.729 4 Linear 0.95366 0.9553 5.3005 2 0 Median 0.86474 0.74501 13.905 2 0 Median 29180000 15399000 13781000 21178000 11244000 9934100 8002100 4154800 3847300 7961 1720 8143 21034;21035;21036;21037 32979;32980;32981;32982;32983;32984 32979 6 LGPLLLDPSLAVR RPALPGLARRDAVRRLGPLLLDPSLAVRET RRLGPLLLDPSLAVRETAAGALRNLSACGG R L G V R E 1 1 0 1 0 0 0 1 0 0 5 0 0 0 2 1 0 0 0 1 0 0 13 0 1362.8235 Q7Z4Q2 Q7Z4Q2 84 96 HEATR3 HEAT repeat-containing protein 3 yes yes 2 0.0016835 74.162 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8794000 0 8794000 8794000 0 8794000 0 0 0 7962 1876 8144 21038;21039 32985;32986 32986 2 LGPLQVAR DRGIHVEVPPAEAERLGPLQVARVLAKLAE PPAEAERLGPLQVARVLAKLAEKEKVDLVL R L G A R V 1 1 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 852.51814 P38117 P38117 99 106 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.013659 64.803 1 4.8973 5.2837 NaN 1 Median 4.8973 5.2837 NaN 1 0 Median NaN NaN NaN 0 0 Median 26308000 4400000 21908000 26308000 4400000 21908000 0 0 0 7963 1551 8145 21040 32987 32987 1 LGPQASSQVVMPPLVR IPPPLVRGGQQASSKLGPQASSQVVMPPLV GPQASSQVVMPPLVRGAQQIHSIRQHSSTG K L G V R G 1 1 0 0 0 2 0 1 0 0 2 0 1 0 3 2 0 0 0 3 0 0 16 0 1677.9236 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 234 249 GATAD2A Transcriptional repressor p66-alpha yes no 2 4.7048E-09 107.17 2 1.1689 1.2202 0.65907 2 Median 1.1689 1.2202 0.65907 2 0 Median NaN NaN NaN 0 0 Median 43451000 21769000 21682000 43451000 21769000 21682000 0 0 0 7964 229 8146 21041;21042 32988;32989;32990;32991;32992;32993 32990 168 6 LGPQNFIDETSDIENLLK RKKLSKPSQVSSGQKLGPQNFIDETSDIEN QNFIDETSDIENLLKEEEDYKEENNDSKET K L G L K E 0 0 2 2 0 1 2 1 0 2 3 1 0 1 1 1 1 0 0 0 0 0 18 0 2045.0317 Q14692 Q14692 629 646 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 3.9313E-24 137.84 2 1.1371 1.2602 1.6334 2 Median 1.1371 1.2602 1.6334 2 0 Median NaN NaN NaN 0 0 Median 112820000 54171000 58646000 112820000 54171000 58646000 0 0 0 7965 1742 8147 21043;21044 32994;32995;32996;32997;32998;32999 32998 6 LGPQNFIDETSDIENLLKEEEDYKEENNDSK RKKLSKPSQVSSGQKLGPQNFIDETSDIEN LKEEEDYKEENNDSKETSGALKWKEDLSRK K L G S K E 0 0 4 4 0 1 7 1 0 2 3 3 0 1 1 2 1 0 1 0 0 0 31 2 3654.6697 Q14692 Q14692 629 659 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 4 1.0211E-30 94.73 2 1.0383 0.99934 47.736 2 Median NaN NaN NaN 0 0 Median 1.0383 0.99934 47.736 2 0 Median 24774000 9270500 15503000 0 0 0 24774000 9270500 15503000 7966 1742 8148 21045;21046 33000;33001 33001 2 LGPSVVGLAR RGYVGSIQPHGVFFRLGPSVVGLARYSHVS GVFFRLGPSVVGLARYSHVSQHSPSKKALY R L G A R Y 1 1 0 0 0 0 0 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 10 0 967.58147 Q14690 Q14690 1343 1352 PDCD11 Protein RRP5 homolog yes yes 2 0.0027872 67.494 2 2 1.2671 1.1997 1.1514 4 Median 1.1247 1.2123 1.3169 2 0 Median 1.4121 1.195 0.40239 2 0 Median 89938000 46256000 43682000 75723000 40251000 35472000 14216000 6005200 8210700 7967 1741 8149 21047;21048;21049;21050 33002;33003;33004;33005;33006;33007 33002 6 LGQAELVVIDEAAAIPLPLVK HRQTIQYIHPADAVKLGQAELVVIDEAAAI VVIDEAAAIPLPLVKSLLGPYLVFMASTIN K L G V K S 4 0 0 1 0 1 2 1 0 2 4 1 0 0 2 0 0 0 0 3 0 0 21 0 2158.2613 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 379 399 NAT10 N-acetyltransferase 10 no no 2 6.8956E-59 172.57 3 2 1.2061 1.1841 16.603 4 Median 0.94138 1.0607 5.9314 2 0 Median 1.6235 1.3727 11.272 2 0 Median 365400000 170430000 194970000 237140000 118870000 118270000 128260000 51564000 76697000 7968 2023;1687 8150 21051;21052;21053;21054;21055 33008;33009;33010;33011;33012;33013;33014;33015;33016 33010 9 LGQALTEVYAK DSISETVILRGEPEKLGQALTEVYAKANSF EPEKLGQALTEVYAKANSFTVSSVAAPSWL K L G A K A 2 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 11 0 1191.6499 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H7C0A4;Q5HYC5 A0A024R4E5 350 360 HDLBP;DKFZp686L08115 Vigilin yes no 2 0.00022817 91.584 1 2.0376 2.1363 NaN 1 Median 2.0376 2.1363 NaN 1 0 Median NaN NaN NaN 0 0 Median 19507000 7121900 12385000 19507000 7121900 12385000 0 0 0 7969 154 8151 21056 33017;33018 33018 2 LGQASLGVIK EMCCEAVKKLFKQDKLGQASLGVIKVISGF FKQDKLGQASLGVIKVISGFVKGRNYEVRP K L G I K V 1 0 0 0 0 1 0 2 0 1 2 1 0 0 0 1 0 0 0 1 0 0 10 0 984.59678 A8K905;Q8WTT2;B4DXL4 A8K905 394 403 NOC3L Nucleolar complex protein 3 homolog yes no 2 4.4037E-08 117.04 1 1 1.2575 1.1751 7.4174 2 Median 1.1535 1.2384 NaN 1 0 Median 1.3709 1.1151 NaN 1 0 Median 25945000 11736000 14209000 21422000 9935200 11487000 4522400 1800700 2721700 7970 780 8152 21057;21058 33019;33020 33019 2 LGQDPYR RLGHDPYRLGHDAYRLGQDPYRLGHDPYRL RLGHDAYRLGQDPYRLGHDPYRLTPDPYRM R L G Y R L 0 1 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 0 847.41882 P18583 P18583 944 950 SON Protein SON yes yes 2 0.030596 68.485 1 1.3989 1.4612 NaN 1 Median 1.3989 1.4612 NaN 1 0 Median NaN NaN NaN 0 0 Median 10624000 4605100 6018600 10624000 4605100 6018600 0 0 0 7971 1499 8153 21059 33021;33022 33022 2 LGQGVLVQVSPSLVK DGAVSLHTRSLKYGKLGQGVLVQVSPSLVK LGQGVLVQVSPSLVKRQKTHFHDLPCGASV K L G V K R 0 0 0 0 0 2 0 2 0 0 3 1 0 0 1 2 0 0 0 4 0 0 15 0 1522.9083 Q13868;B3KQW2 Q13868 166 180 EXOSC2 Exosome complex component RRP4 yes no 2 1.0994E-05 92.247 2 2 0.9755 0.87372 13.586 4 Median 0.97138 0.97842 7.8434 2 0 Median 0.98886 0.79031 6.029 2 0 Median 89381000 44761000 44620000 54262000 27024000 27238000 35119000 17737000 17382000 7972 1722 8154 21060;21061;21062;21063 33023;33024;33025;33026;33027;33028;33029;33030 33028 8 LGQHVVGMAPLSVGSLDDEPGGEAETK ETSEQKTNLEDVGRRLGQHVVGMAPLSVGS VGSLDDEPGGEAETKMLSQPYLLDPSITLG R L G T K M 2 0 0 2 0 1 3 5 1 0 3 1 1 0 2 2 1 0 0 3 0 0 27 0 2692.3014 E5KS95;P43897;B4DHY8 E5KS95 256 282 TSFM Elongation factor Ts, mitochondrial yes no 3 2.1931E-10 50.055 1 3.3124 3.6183 NaN 1 Median 3.3124 3.6183 NaN 1 0 Median NaN NaN NaN 0 0 Median 40328000 7614200 32714000 40328000 7614200 32714000 0 0 0 7973 1208 8155 21064 33031;33032 33032 925 2 LGQLLYLTNLEK LLNDKAVATSQLQKKLGQLLYLTNLEKSQD QKKLGQLLYLTNLEKSQDKTSGGVNPEPCP K L G E K S 0 0 1 0 0 1 1 1 0 0 5 1 0 0 0 0 1 0 1 0 0 0 12 0 1403.8024 A0A0D9SFM0;Q149N8;B3KX98 A0A0D9SFM0 1411 1422 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 0.004055 54.471 1 2 1.3546 1.2108 41.908 2 Median 0.88961 0.90026 NaN 1 0 Median 2.0626 1.6284 NaN 1 0 Median 19412000 5864500 13547000 9014000 4088900 4925100 10398000 1775600 8621900 7974 527 8156 21065;21066;21067 33033;33034;33035;33036 33034 4 LGQSVTTIPTVGFNVETVTYK GLDAAGKTTILYKLKLGQSVTTIPTVGFNV TIPTVGFNVETVTYKNVKFNVWDVGGQDKI K L G Y K N 0 0 1 0 0 1 1 2 0 1 1 1 0 1 1 1 5 0 1 4 0 0 21 0 2253.1893 Q6FH17;Q5U025;P62330 Q6FH17 35 55 ARF6 ADP-ribosylation factor 6 yes no 2 1.6573E-05 47.774 1 2.735 2.8064 NaN 1 Median 2.735 2.8064 NaN 1 0 Median NaN NaN NaN 0 0 Median 14442000 4232000 10210000 14442000 4232000 10210000 0 0 0 7975 1647 8157 21068 33037 33037 1 LGQVASSLFR NPDDGVRGSPPEDYRLGQVASSLFRGEHHS PEDYRLGQVASSLFRGEHHSRGGTGRLASL R L G F R G 1 1 0 0 0 1 0 1 0 0 2 0 0 1 0 2 0 0 0 1 0 0 10 0 1076.5978 P42696;A2A2V2;Q5TCT4;H7C5M1 P42696 35 44 RBM34 RNA-binding protein 34 yes no 2 0.0046589 74.173 2 0.98902 0.83599 1.954 2 Median NaN NaN NaN 0 0 Median 0.98902 0.83599 1.954 2 0 Median 14000000 6685700 7314300 0 0 0 14000000 6685700 7314300 7976 1566 8158 21069;21070 33038;33039;33040;33041 33038 4 LGSESQYSPTPLLK IDAVFHGAVWPQISRLGSESQYSPTPLLKL RLGSESQYSPTPLLKLISIWSRNARYFPLL R L G L K L 0 0 0 0 0 1 1 1 0 0 3 1 0 0 2 3 1 0 1 0 0 0 14 0 1518.793 O75691 O75691 1191 1204 UTP20 Small subunit processome component 20 homolog yes yes 2 1.6012E-46 179.94 2 2 1.521 1.4439 5.0374 4 Median 1.3147 1.4481 5.8105 2 0 Median 1.7802 1.4334 6.4284 2 0 Median 121320000 53077000 68245000 102340000 46414000 55922000 18986000 6663600 12322000 7977 1412 8159 21071;21072;21073;21074 33042;33043;33044;33045;33046;33047;33048;33049 33049 8 LGSFPVR SFLMDFIHQVGLFGRLGSFPVRGTPMATRL HQVGLFGRLGSFPVRGTPMATRLLLCEHAE R L G V R G 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 7 0 774.43882 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 608 614 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.026804 79.454 1 1.4174 1.3999 NaN 1 Median 1.4174 1.3999 NaN 1 0 Median NaN NaN NaN 0 0 Median 14987000 5653900 9332900 14987000 5653900 9332900 0 0 0 7978 1070 8160 21075 33050 33050 1 LGSLVDEFK AVDLTLPKVEAMNKRLGSLVDEFKELVYPP EAMNKRLGSLVDEFKELVYPPDYNPEGKVT R L G F K E 0 0 0 1 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1006.5335 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 518 526 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 0.00028235 103.56 2 0.4684 0.53483 13.398 2 Median 0.4684 0.53483 13.398 2 0 Median NaN NaN NaN 0 0 Median 330890000 231780000 99115000 330890000 231780000 99115000 0 0 0 7979 82 8161 21076;21077 33051;33052;33053;33054 33051 4 LGSLVR PGGGPAAAKASFSSRLGSLVRGITALTSKH AAKASFSSRLGSLVRGITALTSKHEEEKLI R L G V R G 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 6 0 643.40171 H0YK95;H0YL95;B4DM48;Q9UPM8 H0YK95 36 41 AP4E1 AP-4 complex subunit epsilon-1 yes no 2 0.0039832 143.22 2 1.0914 1.2289 10.019 2 Median 1.0914 1.2289 10.019 2 0 Median NaN NaN NaN 0 0 Median 170270000 80216000 90055000 170270000 80216000 90055000 0 0 0 7980 1002 8162 21078;21079 33055;33056 33056 2 LGSPDYGNSALLSLPGYRPTTR QASLRATSSTQSLARLGSPDYGNSALLSLP NSALLSLPGYRPTTRSSARRSQAGVSSGAP R L G T R S 1 2 1 1 0 0 0 3 0 0 4 0 0 0 3 3 2 0 2 0 0 0 22 1 2334.1968 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1846 1867 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 1.3847E-08 69.922 1 2 0.46267 0.40558 7.4539 2 Median NaN NaN NaN 0 0 Median 0.46267 0.40558 7.4539 2 0 Median 52994000 39816000 13178000 20793000 20793000 0 32201000 19023000 13178000 7981 186;1747 8163 21080;21081;21082 33057;33058;33059;33060 33057 4 LGSSGLGSASSIQAAVR DDTRRANKKAKQTGRLGSSGLGSASSIQAA SSGLGSASSIQAAVRQLEAEADAIIQMVRE R L G V R Q 3 1 0 0 0 1 0 3 0 1 2 0 0 0 0 5 0 0 0 1 0 0 17 0 1559.8267 Q5H924;A0A024R9Y3;A0A024R9U8;A0A024R9W5;Q7Z6Z7;Q5H935;H0Y659 Q5H924 2783 2799 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.0084319 46.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7982 289 8164 21083 33061 33061 1 LGSTVFVANLDYK PNIPNEIIHALQAGRLGSTVFVANLDYKVG GRLGSTVFVANLDYKVGWKKLKEVFSMAGV R L G Y K V 1 0 1 1 0 0 0 1 0 0 2 1 0 1 0 1 1 0 1 2 0 0 13 0 1425.7504 P52272;A0A087X0X3;Q59ES8;Q7KYM9;M0R019;B4DEG4;M0R2T0;M0QYQ7 P52272 202 214 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 2 9.6148E-06 100.55 2 2 1.4436 1.731 39.537 4 Linear 1.4063 1.6402 2.9084 2 0 Median 1.0108 0.82771 1.8835 2 0 Median 640450000 276510000 363940000 581550000 245920000 335620000 58900000 30582000 28319000 7983 1599 8165 21084;21085;21086;21087 33062;33063;33064;33065;33066;33067;33068;33069 33062 8 LGSVEAPK KRLSSRARKRAAKRRLGSVEAPKTNKSPEA KRAAKRRLGSVEAPKTNKSPEAKPLPGKLP R L G P K T 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 8 0 799.44397 P46087;F5H5X6;F5GWB7;F5H709;F5H359 P46087 56 63 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.011754 69.198 1 1 1.2353 1.1773 9.7392 2 Median 1.1135 1.2612 NaN 1 0 Median 1.3704 1.0989 NaN 1 0 Median 161880000 78061000 83821000 154360000 74876000 79487000 7519400 3185300 4334100 7984 1570 8166 21088;21089 33070;33071;33072 33070 3 LGTEPTSETQDELQR PEMEDLPSKGVQEERLGTEPTSETQDELQR LGTEPTSETQDELQRLLGLLRDQDPLSEEQ R L G Q R L 0 1 0 1 0 2 3 1 0 0 2 0 0 0 1 1 3 0 0 0 0 0 15 0 1702.801 B4DLM8;O15381;B4DQJ4 B4DLM8 516 530 NVL Nuclear valosin-containing protein-like yes no 2 2.2608E-10 109.6 2 1 1.693 1.6411 18.97 2 Median 1.7954 1.8767 NaN 1 0 Median 1.5965 1.4351 NaN 1 0 Median 21489000 11625000 9863300 19231000 10633000 8598300 2257600 992650 1265000 7985 997 8167 21090;21091;21092 33073;33074;33075 33074 3 LGTLEQEATADVEWR TEVGPRFELKLYMIRLGTLEQEATADVEWR LGTLEQEATADVEWRWHPYTNTARKRVFLS R L G W R W 2 1 0 1 0 1 3 1 0 0 2 0 0 0 0 0 2 1 0 1 0 0 15 0 1716.8319 H0Y714;Q96G21;E7ENR5 H0Y714 249 263 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 2.7291E-10 149.41 2 2 1.0448 0.98748 17.501 4 Median 0.78415 0.82787 12.662 2 0 Median 1.3206 1.0898 1.6723 2 0 Median 97266000 48399000 48867000 67701000 35927000 31774000 29566000 12473000 17093000 7986 1286 8168 21093;21094;21095;21096 33076;33077;33078;33079;33080;33081;33082;33083;33084;33085;33086 33081 11 LGTLSLPLPPAQTSDR KRRVSVAAGSEEDHKLGTLSLPLPPAQTSD GTLSLPLPPAQTSDRLAKRRKIT_______ K L G D R L 1 1 0 1 0 1 0 1 0 0 4 0 0 0 3 2 2 0 0 0 0 0 16 0 1664.9097 Q9GZS1;B4E005 Q9GZS1 458 473 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 2 0.0029665 38.634 2 0.91747 0.93465 2.1575 2 Median 0.91747 0.93465 2.1575 2 0 Median NaN NaN NaN 0 0 Median 19103000 8623600 10479000 19103000 8623600 10479000 0 0 0 7987 2022 8169 21097;21098 33087;33088;33089 33089 3 LGTNQENQQPNQQPPGK HTVLKLQGQVSAKKRLGTNQENQQPNQQPP TNQENQQPNQQPPGKKPFLRNLLPRTPTCQ R L G G K K 0 0 3 0 0 5 1 2 0 0 1 1 0 0 3 0 1 0 0 0 0 0 17 0 1876.9028 O95235 O95235 830 846 KIF20A Kinesin-like protein KIF20A yes yes 2 5.0554E-146 262.56 2 2 0.9837 0.91303 20.605 4 Median 0.71421 0.74893 9.7813 2 0 Median 1.3119 1.0549 2.1843 2 0 Median 62538000 32112000 30426000 35768000 20514000 15254000 26770000 11599000 15171000 7988 1421 8170 21099;21100;21101;21102 33090;33091;33092;33093;33094;33095;33096;33097 33094 8 LGTPELSTAER TMRRVDPVYIHLAERLGTPELSTAERKELE LAERLGTPELSTAERKELENKLKEREEFLI R L G E R K 1 1 0 0 0 0 2 1 0 0 2 0 0 0 1 1 2 0 0 0 0 0 11 0 1172.6037 A0A024R0Y2;B2ZZ90;Q13085;Q7Z5W8;Q59FY4;B4DIG6;B4DIW1;B4DWK9;B4DIR2;B4DK31 A0A024R0Y2 2073 2083 hCG_30204;ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.00093586 71.349 1 0.89125 0.98575 NaN 1 Median 0.89125 0.98575 NaN 1 0 Median NaN NaN NaN 0 0 Median 59318000 30165000 29153000 59318000 30165000 29153000 0 0 0 7989 60 8171 21103 33098 33098 1 LGTPVLQALGDGDFVK TDSAYVVASMRIMTRLGTPVLQALGDGDFV GTPVLQALGDGDFVKCLHSVGQPLTGQGEP R L G V K C 1 0 0 2 0 1 0 3 0 0 3 1 0 1 1 0 1 0 0 2 0 0 16 0 1628.8774 H0YML5;B4DW73;Q6IB91;A0A0S2Z430;Q16822;H0YMU6;H0YNG4;H0YMA5;A0A0A0MS74;A0A0S2Z451;H0YM31 H0YML5 60 75 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 2 3.6262E-06 81.676 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6816000 0 6816000 6816000 0 6816000 0 0 0 7990 556 8172 21104;21105 33099;33100 33099 2 LGTQPYFFNK VLEDVDQCCQALSQRLGTQPYFFNKQPTEL ALSQRLGTQPYFFNKQPTELDALVFGHLYT R L G N K Q 0 0 1 0 0 1 0 1 0 0 1 1 0 2 1 0 1 0 1 0 0 0 10 0 1213.6132 C9JNK6;C9JAZ1;B7Z9F3;O75431;B3KM74 C9JNK6 141 150 MTX2 Metaxin-2 yes no 2 0.034771 40.882 1 1.3013 1.2986 NaN 1 Median 1.3013 1.2986 NaN 1 0 Median NaN NaN NaN 0 0 Median 18902000 7677300 11225000 18902000 7677300 11225000 0 0 0 7991 1107 8173 21106 33101 33101 1 LGVCFDVPTASVTEIQEK EIDSKVKGMVFLKGKLGVCFDVPTASVTEI CFDVPTASVTEIQEKWHDSRRWQLSVATEQ K L G E K W 1 0 0 1 1 1 2 1 0 1 1 1 0 1 1 1 2 0 0 3 0 0 18 0 1991.9874 Q9NR30;Q8NI92 Q9NR30 679 696 DDX21;OK/SW-cl.65 Nucleolar RNA helicase 2 yes no 2 8.1315E-08 91.62 2 2 1.1667 1.1665 13.588 4 Median 1.1458 1.2884 0.020916 2 0 Median 1.2078 1.0228 4.5638 2 0 Median 316800000 141990000 174810000 198430000 87914000 110510000 118370000 54080000 64294000 7992 2065 8174 21107;21108;21109;21110 33102;33103;33104;33105;33106;33107 33102 6 LGVDLDAQTWR GGGLLENIPRVLPEKLGVDLDAQTWRIPRV LPEKLGVDLDAQTWRIPRVFSWLQQEGHLS K L G W R I 1 1 0 2 0 1 0 1 0 0 2 0 0 0 0 0 1 1 0 1 0 0 11 0 1272.6463 Q3B7A7;Q59HH3;P22102;B4DJ93 Q3B7A7 698 708 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.00036932 83.883 2 2.4634 2.5797 7.9821 2 Median 2.4634 2.5797 7.9821 2 0 Median NaN NaN NaN 0 0 Median 44380000 11514000 32865000 44380000 11514000 32865000 0 0 0 7993 1507 8175 21111;21112 33108;33109 33109 2 LGVLTSR DEMNIRLWKANASEKLGVLTSREKAAKDYN WKANASEKLGVLTSREKAAKDYNQKLKEKF K L G S R E 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 7 0 744.44939 A0A087WT20;Q9NV06 A0A087WT20 512 518 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.00073443 139.92 2 1 0.96208 1.0943 4.069 3 Median 0.95941 1.0724 2.8471 2 0 Median 1.3676 1.1402 NaN 1 0 Median 178680000 94218000 84459000 171930000 91430000 80499000 6747400 2788100 3959400 7994 402 8176 21113;21114;21115 33110;33111;33112;33113;33114 33111 5 LGVTNTIISHYDGR ANAERLKSVVGNLHRLGVTNTIISHYDGRQ RLGVTNTIISHYDGRQFPKVVGGFDRVLLD R L G G R Q 0 1 1 1 0 0 0 2 1 2 1 0 0 0 0 1 2 0 1 1 0 0 14 0 1544.7947 P46087 P46087 432 445 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 3 6.1274E-15 131.53 2 2 1.0555 1.0642 14.332 4 Median 1.0284 1.2011 2.4793 2 0 Median 1.0853 0.9399 2.9374 2 0 Median 664830000 332720000 332100000 571750000 287650000 284090000 93080000 45072000 48007000 7995 1570 8177 21116;21117;21118;21119 33115;33116;33117;33118;33119;33120;33121 33118 7 LGWGSGWDVLLPK ILLIQQPGKVTGEDRLGWGSGWDVLLPKGW DRLGWGSGWDVLLPKGWGMAFWIPFIYRGV R L G P K G 0 0 0 1 0 0 0 3 0 0 3 1 0 0 1 1 0 2 0 1 0 0 13 0 1426.7609 Q96F88;Q99575 Q96F88 612 624 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.0060749 55.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1887800 0 1887800 1887800 0 1887800 0 0 0 7996 1965 8178 21120 33122 33122 1 LGWSQPLGNLQAPLGYDK FEITVDEMPPDTAARLGWSQPLGNLQAPLG SQPLGNLQAPLGYDKFSYSWRSKKGTKFHQ R L G D K F 1 0 1 1 0 2 0 3 0 0 4 1 0 0 2 1 0 1 1 0 0 0 18 0 1956.0105 A8K6T5;Q9UBL3;F5H8F7;B4DPT1;H0YBF6;B4DEM3 A8K6T5 438 455 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.00067517 42.209 2 0.58201 0.59987 2.2247 2 Median 0.58201 0.59987 2.2247 2 0 Median NaN NaN NaN 0 0 Median 22273000 11259000 11014000 22273000 11259000 11014000 0 0 0 7997 763 8179 21121;21122 33123;33124;33125 33125 3 LGYDPQAK DVISLEQGKKEQIERLGYDPQAKAPFQPKP KKEQIERLGYDPQAKAPFQPKPKQKGRSST R L G A K A 1 0 0 1 0 1 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 8 0 890.44978 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806 B0UZZ8 540 547 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.0088018 77.058 2 0.86004 0.94706 4.4216 2 Median 0.86004 0.94706 4.4216 2 0 Median NaN NaN NaN 0 0 Median 118970000 61462000 57509000 118970000 61462000 57509000 0 0 0 7998 809 8180 21123;21124 33126;33127;33128 33126 3 LHCAFASLPK GLIQDKEWNEKELQKLHCAFASLPKHKPGF KELQKLHCAFASLPKHKPGFWSEVAAAVGS K L H P K H 2 0 0 0 1 0 0 0 1 0 2 1 0 1 1 1 0 0 0 0 0 0 10 0 1142.5906 Q6P0N0 Q6P0N0 888 897 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.015104 48.794 1 1.3354 1.1262 NaN 1 Median NaN NaN NaN 0 0 Median 1.3354 1.1262 NaN 1 0 Median 1555900 701120 854830 0 0 0 1555900 701120 854830 7999 1849 8181 21125 33129 33129 1 LHDETLTYLNQGQSYEIR PFQYVLCAATSPAVKLHDETLTYLNQGQSY ETLTYLNQGQSYEIRMLDNRKLGELPEING K L H I R M 0 1 1 1 0 2 2 1 1 1 3 0 0 0 0 1 2 0 2 0 0 0 18 0 2179.0546 A8KAN5;A0A024R2L0;Q9NZI7;A0A024R2J0;C9JWL3;A0A024R120;Q12800;F8VX55 A0A024R120 81 98 UBP1;TFCP2 Upstream-binding protein 1;Alpha-globin transcription factor CP2 no no 3 0.013365 22.221 1 1.0843 0.90622 NaN 1 Median NaN NaN NaN 0 0 Median 1.0843 0.90622 NaN 1 0 Median 3443400 1589600 1853800 0 0 0 3443400 1589600 1853800 8000 66;115 8182 21126 33130 33130 1 LHDLLPPD ELNEDVRPHIRDRFRLHDLLPPD_______ HIRDRFRLHDLLPPD_______________ R L H P D - 0 0 0 2 0 0 0 0 1 0 3 0 0 0 2 0 0 0 0 0 0 0 8 0 918.48108 A0A024R5Q8;Q05D32 A0A024R5Q8 459 466 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.050893 49.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15249000 0 0 15249000 0 0 0 0 0 8001 187 8183 21127 33131 33131 1 LHDNPLTDENK FYFKAARIAIEIYLKLHDNPLTDENKEHEA IYLKLHDNPLTDENKEHEADTANMSDKELK K L H N K E 0 0 2 2 0 0 1 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1294.6153 Q58F05;B4E2T6;A0A0B4J1W3;B2RBE5;Q9BXJ9 Q58F05 568 578 NARG1;NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.00068224 72.848 3 2.5659 2.5951 NaN 1 Median 2.5659 2.5951 NaN 1 0 Median NaN NaN NaN 0 0 Median 11298000 2400000 8898400 11298000 2400000 8898400 0 0 0 8002 499 8184 21128;21129;21130 33132;33133;33134 33134 3 LHDSLAIER SGTLVMDAYEPEISRLHDSLAIERKIK___ EPEISRLHDSLAIERKIK____________ R L H E R K 1 1 0 1 0 0 1 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1052.5615 E9PRB9;E9PL01;B4DDB9;A0A087WUC6;E9PI68;Q15005 E9PRB9 76 84 SPCS2 Signal peptidase complex subunit 2 yes no 2 0.0056063 66.299 1 0.68457 0.68305 NaN 1 Median 0.68457 0.68305 NaN 1 0 Median NaN NaN NaN 0 0 Median 16693000 7434000 9258900 16693000 7434000 9258900 0 0 0 8003 410 8185 21131 33135 33135 1 LHDSSGSQVGTGFK IAEAPSAFTLGSEMKLHDSSGSQVGTGFKS KLHDSSGSQVGTGFKSNFSEKASKFGNTEQ K L H F K S 0 0 0 1 0 1 0 3 1 0 1 1 0 1 0 3 1 0 0 1 0 0 14 0 1418.679 P49792 P49792 1829 1842 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 1.6849E-09 106.67 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12464000 0 12464000 12464000 0 12464000 0 0 0 8004 1588 8186 21132;21133;21134 33136;33137;33138 33137 3 LHEEGIIYR MDPKLSAAVTEAFVRLHEEGIIYRSTRLVN TEAFVRLHEEGIIYRSTRLVNWSCTLNSAI R L H Y R S 0 1 0 0 0 0 2 1 1 2 1 0 0 0 0 0 0 0 1 0 0 0 9 0 1128.5928 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 462 470 VARS Valine--tRNA ligase yes no 2 0.0093753 64.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8005 363 8187 21135 33139 33139 1 LHEEIQNLIK SALMIWGSIEKEHDKLHEEIQNLIKIQAIA KEHDKLHEEIQNLIKIQAIAVCMENGNFKE K L H I K I 0 0 1 0 0 1 2 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1235.6874 A0A024R7X2;A0A024R7X1;P54274;E7EWM7;A8K914;E5RFJ5 A0A024R7X2 204 213 TERF1 Telomeric repeat-binding factor 1 yes no 2 0.001667 72.607 2 0.64371 0.64624 NaN 1 Median 0.64371 0.64624 NaN 1 0 Median NaN NaN NaN 0 0 Median 11821000 8696900 3124500 11821000 8696900 3124500 0 0 0 8006 236 8188 21136;21137 33140;33141;33142 33142 3 LHFFMPGFAPLTAR ADLRKLAVNMVPFPRLHFFMPGFAPLTARG RLHFFMPGFAPLTARGSQQYRALTVPELTQ R L H A R G 2 1 0 0 0 0 0 1 1 0 2 0 1 3 2 0 1 0 0 0 0 0 14 0 1603.8333 Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3 Q9BV28 219 232 TUBB3 Tubulin beta-3 chain no no 3 0.00131 54.199 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8007 502 8189 21138 33143 33143 351 1 LHFFMPGFAPLTSR ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG RLHFFMPGFAPLTSRGSQQYRALTVPELTQ R L H S R G 1 1 0 0 0 0 0 1 1 0 2 0 1 3 2 1 1 0 0 0 0 0 14 0 1619.8283 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;I0CMK4;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2;A6NNZ2;Q3ZCM7;A0A075B736;Q5SQY0;P04350;B4DE77;B4DJ43;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 Q5JP53 245 258 TUBB;XTP3TPATP1;TUBB4Q;TUBB2C;TUBB4B;TUBB2A;TUBB2B;DKFZp566F223;TUBB8;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 2;3 1.3481E-07 111.12 6 4 1.4809 1.2255 49.506 9 Median 1.9111 2.2142 42.604 5 0 Median 1.4423 1.1732 39.24 4 0 Median 850700000 276560000 574140000 804660000 255140000 549520000 46046000 21422000 24624000 8008 1452;1660;1723;1441;2004;1778 8190;8191 21139;21140;21141;21142;21143;21144;21145;21146;21147;21148 33144;33145;33146;33147;33148;33149;33150;33151;33152;33153;33154;33155;33156;33157;33158;33159;33160;33161;33162;33163;33164;33165;33166;33167;33168;33169;33170 33146 1142 27 LHGELQDR GTGKTFSFAIPLIEKLHGELQDRKRGRAPQ AIPLIEKLHGELQDRKRGRAPQVLVLAPTR K L H D R K 0 1 0 1 0 1 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 966.48829 Q9NR30 Q9NR30 248 255 DDX21 Nucleolar RNA helicase 2 yes yes 3 0.0098254 45.081 1 0.9544 1.0614 NaN 1 Median 0.9544 1.0614 NaN 1 0 Median NaN NaN NaN 0 0 Median 75722000 37048000 38674000 75722000 37048000 38674000 0 0 0 8009 2065 8192 21149 33171 33171 1 LHGLPEQFLYGTATK KEWLTNFMEDRRQRRLHGLPEQFLYGTATK LHGLPEQFLYGTATKHLTYNDFINKELILF R L H T K H 1 0 0 0 0 1 1 2 1 0 3 1 0 1 1 0 2 0 1 0 0 0 15 0 1673.8777 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 670 684 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 3.3761E-06 92.265 2 3 1.0612 0.85766 14.409 4 Median 0.57904 0.65328 NaN 1 0 Median 1.0693 0.87365 2.8169 3 0 Median 85693000 55415000 30278000 66165000 45973000 20192000 19527000 9441500 10086000 8010 1679 8193 21150;21151;21152;21153;21154 33172;33173;33174;33175;33176;33177;33178;33179;33180 33174 9 LHGSVGGAQNLSALGALVSLSNAR NRSAPHLPGLMCLLRLHGSVGGAQNLSALG NLSALGALVSLSNARLSSIKTRFEGLCLLS R L H A R L 4 1 2 0 0 1 0 4 1 0 5 0 0 0 0 4 0 0 0 2 0 0 24 0 2291.2346 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;I3L445;I3L1P4;I3L4M7 O15451 44 67 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 3 7.5244E-05 36.256 1 1 0.80104 0.74615 50.741 2 Median 1.0404 1.0682 NaN 1 0 Median 0.61677 0.5212 NaN 1 0 Median 9449200 5005500 4443700 6461000 3092200 3368800 2988200 1913300 1074900 8011 746 8194 21155;21156 33181;33182;33183;33184 33182 4 LHIFNAK GFCHVGEEENEARGKLHIFNAKKAAAHYKC EENEARGKLHIFNAKKAAAHYKCMLFSSGT K L H A K K 1 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 841.48102 A0A0D9SGE8;Q8IWS0;Q5JRC6 A0A0D9SGE8 229 235 PHF6 PHD finger protein 6 yes no 2 0.023416 91.093 1 1 0.94568 0.88565 18.005 2 Median 0.89259 1.0059 NaN 1 0 Median 1.0019 0.77978 NaN 1 0 Median 72620000 36719000 35901000 60212000 30585000 29627000 12408000 6133500 6274400 8012 528 8195 21157;21158 33185;33186;33187 33185 3 LHIIEVGTPPTGNQPFPK STLFCFAVRGQAGGKLHIIEVGTPPTGNQP IEVGTPPTGNQPFPKKAVDVFFPPEAQNDF K L H P K K 0 0 1 0 0 1 1 2 1 2 1 1 0 1 4 0 2 0 0 1 0 0 18 0 1944.0469 A0A087WVQ6;Q00610 A0A087WVQ6 232 249 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 0.00015569 58.83 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13644000 0 13644000 13644000 0 13644000 0 0 0 8013 419 8196 21159 33188;33189 33188 2 LHILASGADVTSANAK KSLDLDSCTLSEILRLHILASGADVTSANA HILASGADVTSANAKYRYQKRGGFDATDDA R L H A K Y 4 0 1 1 0 0 0 1 1 1 2 1 0 0 0 2 1 0 0 1 0 0 16 0 1566.8366 D3DS96;Q9NRL2;Q59G54;A0A087WWN7 D3DS96 554 569 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 3 0.00042329 63.754 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16398000 0 16398000 13849000 0 13849000 2549700 0 2549700 8014 1187 8197 21160;21161 33190;33191 33190 2 LHISPSNMTNQNTNEYLEK LPYNDYFEYFGPDFKLHISPSNMTNQNTNE PSNMTNQNTNEYLEKIKQRLFENLRMLPHA K L H E K I 0 0 4 0 0 1 2 0 1 1 2 1 1 0 1 2 2 0 1 0 0 0 19 0 2232.0481 Q6IT96;Q13547;Q5HYD4 Q6IT96 343 361 HDAC1;DKFZp686H12203 Histone deacetylase;Histone deacetylase 1 yes no 3 9.5137E-09 92.679 2 1 1.0067 1.1339 15.809 3 Median 0.98329 1.104 3.7887 2 0 Median 1.8623 1.446 NaN 1 0 Median 126240000 59547000 66690000 122670000 58079000 64592000 3566400 1468200 2098200 8015 1715 8198;8199 21162;21163;21164 33192;33193;33194;33195;33196 33193 1545 5 LHISPSNMTNQNTPEYMEK LPYNDYFEYFGPDFKLHISPSNMTNQNTPE PSNMTNQNTPEYMEKIKQRLFENLRMLPHA K L H E K I 0 0 3 0 0 1 2 0 1 1 1 1 2 0 2 2 2 0 1 0 0 0 19 0 2233.0144 Q92769;B3KUJ5;Q59GB9 Q92769 344 362 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 3 1.8977E-08 91.589 2 2.0546 2.2879 NaN 1 Median 2.0546 2.2879 NaN 1 0 Median NaN NaN NaN 0 0 Median 69603000 14455000 55148000 69603000 14455000 55148000 0 0 0 8016 1952 8200 21165;21166 33197;33198;33199 33198 1797;1798 3 LHITIPR GSMKDTCKIVLATPRLHITIPRRSKRNISK KIVLATPRLHITIPRRSKRNISKLSPPRIF R L H P R R 0 1 0 0 0 0 0 0 1 2 1 0 0 0 1 0 1 0 0 0 0 0 7 0 848.52322 Q6P0N0;G5E9K5;H7C1S6 Q6P0N0 349 355 MIS18BP1 Mis18-binding protein 1 yes no 2 0.01763 106.85 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8017 1849 8201 21167;21168 33200;33201 33201 2 LHIVQVVCK DGNELTLADCNLLPKLHIVQVVCKKYRGFT CNLLPKLHIVQVVCKKYRGFTIPEAFRGVH K L H C K K 0 0 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 3 0 0 9 0 1094.627 Q5SRT3;Q53FB0;O00299 Q5SRT3 184 192 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 0.0021437 89.296 1 1.926 2.0763 NaN 1 Median 1.926 2.0763 NaN 1 0 Median NaN NaN NaN 0 0 Median 38021000 12031000 25991000 38021000 12031000 25991000 0 0 0 8018 1362 8202 21169 33202;33203 33202 2 LHLAIPTR ETKMKGNKVNEVLNRLHLAIPTRRDDKERP VNEVLNRLHLAIPTRRDDKERPPFIPEGVV R L H T R R 1 1 0 0 0 0 0 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 8 0 919.56034 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 358 365 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2;3 0.00053034 131.04 4 3 1.4072 1.3268 5.8477 7 Median 1.2326 1.406 3.7802 4 0 Median 1.4727 1.2685 1.2466 3 0 Median 773940000 333320000 440620000 707020000 306400000 400610000 66923000 26915000 40007000 8019 1183 8203 21170;21171;21172;21173;21174;21175;21176 33204;33205;33206;33207;33208;33209;33210;33211;33212;33213;33214;33215 33209 12 LHLAIPTRR ETKMKGNKVNEVLNRLHLAIPTRRDDKERP NEVLNRLHLAIPTRRDDKERPPFIPEGVVA R L H R R D 1 2 0 0 0 0 0 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 9 1 1075.6614 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 358 366 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 0.0072747 48.794 2 1.5087 1.3285 3.203 2 Median NaN NaN NaN 0 0 Median 1.5087 1.3285 3.203 2 0 Median 8725400 3201900 5523500 0 0 0 8725400 3201900 5523500 8020 1183 8204 21177;21178 33216;33217;33218 33216 3 LHLGFIEIR LHDNDRRLADHFGGKLHLGFIEIREKLEEL DHFGGKLHLGFIEIREKLEELKRVVAEKQE K L H I R E 0 1 0 0 0 0 1 1 1 2 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1096.6393 B3KRR1;B3KSL5;A0A0A6YYJ8;Q9Y383 B3KRR1 161 169 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 2 0.0059748 73.248 1 1 0.3358 0.28077 NaN 1 Median NaN NaN NaN 0 0 Median 0.3358 0.28077 NaN 1 0 Median 7055300 2305400 4749900 3405500 0 3405500 3649800 2305400 1344400 8021 494 8205 21179;21180 33219;33220 33219 2 LHLSGIDANPNALFPPVEFPAPR DHRDNLEFFLAGIGRLHLSGIDANPNALFP NPNALFPPVEFPAPRGTPLISPLIKWDHSL R L H P R G 3 1 2 1 0 0 1 1 1 1 3 0 0 2 5 1 0 0 0 1 0 0 23 0 2471.2961 A0A0U1RQF0;P49327 A0A0U1RQF0 803 825 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 5.889E-07 52.541 2 1.7379 1.712 NaN 1 Median 1.7379 1.712 NaN 1 0 Median NaN NaN NaN 0 0 Median 20035000 10230000 9804700 20035000 10230000 9804700 0 0 0 8022 587 8206 21181;21182 33221;33222;33223;33224;33225 33222 5 LHLVDLAGSER EQRKKSDKNSSFRSKLHLVDLAGSERQKKT FRSKLHLVDLAGSERQKKTKAEGDRLKEGI K L H E R Q 1 1 0 1 0 0 1 1 1 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1208.6513 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3;Q5JRK0;Q8IWH8;Q05CT3;D3DQ90;H0Y718;J3KPF9;Q2UVF2;A0A087X011;E9PES4;B4DHG8;Q17RI8;B7ZKX5;Q9Y496;Q6ZMV9 Q59HG1 239 249 KIF4A;KIF4B;KIF6;KIF3A Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B;Kinesin-like protein KIF3A;Kinesin-like protein KIF6 yes no 2;3 0.00022817 91.584 3 2 0.86019 0.98109 14.953 5 Median 0.8344 0.87603 7.7954 3 0 Median 1.4153 1.1584 0.56602 2 0 Median 127570000 65407000 62162000 97648000 52775000 44873000 29921000 12633000 17289000 8023 1803 8207 21183;21184;21185;21186;21187 33226;33227;33228;33229;33230;33231;33232;33233;33234;33235 33229 10 LHLVPAEK EGHIILHSMHRYLPRLHLVPAEKAVEVIQL MHRYLPRLHLVPAEKAVEVIQLNGPGVHTF R L H E K A 1 0 0 0 0 0 1 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 8 0 905.53345 B9EGR5;Q8IWI9;H3BP52;H3BTF4 B9EGR5 204 211 MGA MAX gene-associated protein yes no 2 0.0053395 90.777 1 0.73787 0.7703 NaN 1 Median 0.73787 0.7703 NaN 1 0 Median NaN NaN NaN 0 0 Median 12195000 7153200 5041700 12195000 7153200 5041700 0 0 0 8024 1121 8208 21188 33236 33236 1 LHNAIEGGTQLSR KSQQSAGKEYVGIVRLHNAIEGGTQLSRAL VRLHNAIEGGTQLSRALETLTGALFQRPPL R L H S R A 1 1 1 0 0 1 1 2 1 1 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1394.7266 O60832;C9IYT0;U5UA77;H7C0M1;H7BZF2 O60832 159 171 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2;3 1.4918E-06 114.76 4 2 0.71776 1.0389 33.041 4 Linear 0.82206 0.92859 4.8283 2 0 Median 0.63597 0.52502 0.35395 2 0 Median 223220000 144150000 79069000 203260000 132790000 70473000 19955000 11359000 8596000 8025 1398 8209 21189;21190;21191;21192;21193;21194 33237;33238;33239;33240;33241;33242;33243;33244 33242 8 LHNELQSGSLR SRPSGRSDLTVDAVKLHNELQSGSLRLGKS DAVKLHNELQSGSLRLGKSEAPETPMEEEA K L H L R L 0 1 1 0 0 1 1 1 1 0 3 0 0 0 0 2 0 0 0 0 0 0 11 0 1252.6524 B3KMR5;Q5JTH9;A0A087X1U8 B3KMR5 58 68 RRP12 RRP12-like protein yes no 2;3 4.2294E-40 173.24 4 4 1.3067 1.1105 15.905 5 Median 1.3052 1.4607 6.4245 2 0 Median 1.3183 1.1057 1.3306 3 0 Plateau 227980000 69296000 158690000 200690000 58776000 141910000 27299000 10520000 16779000 8026 907 8210 21195;21196;21197;21198;21199;21200;21201;21202 33245;33246;33247;33248;33249;33250;33251;33252;33253 33248 9 LHNQLQELK EREERLHGLEMERRRLHNQLQELKGNIRVF EMERRRLHNQLQELKGNIRVFCRVRPVLPG R L H L K G 0 0 1 0 0 2 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1121.6193 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 300 308 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.017549 52.867 1 1.2045 1.0199 NaN 1 Median NaN NaN NaN 0 0 Median 1.2045 1.0199 NaN 1 0 Median 1461500 593710 867830 0 0 0 1461500 593710 867830 8027 371 8211 21203 33254 33254 1 LHNQQALSSSIEEGLR EYEAHQDRVLIRLSRLHNQQALSSSIEEGL HNQQALSSSIEEGLRMQAMHRAQRVRRPIP R L H L R M 1 1 1 0 0 2 2 1 1 1 3 0 0 0 0 3 0 0 0 0 0 0 16 0 1780.9068 A0A024RCR9;Q06587;B4DVB5;B4DW57 A0A024RCR9 102 117 RING1 E3 ubiquitin-protein ligase RING1 yes no 3 0.0014719 53.565 1 1 1.0323 1.0467 NaN 1 Median 1.0323 1.0467 NaN 1 0 Median NaN NaN NaN 0 0 Median 22022000 11796000 10225000 20219000 9993400 10225000 1803000 1803000 0 8028 369 8212 21204;21205 33255;33256 33255 1 LHNSLIGTK DLANIAEVEVSIPAKLHNSLIGTKGRLIRS VSIPAKLHNSLIGTKGRLIRSIMEECGGVH K L H T K G 0 0 1 0 0 0 0 1 1 1 2 1 0 0 0 1 1 0 0 0 0 0 9 0 981.56073 A0A024R4E5;Q00341;B2R5V9;H0Y394;Q6ZS03;Q96CF6;Q6ZN49;H7BZC3;H7C2D1 A0A024R4E5 664 672 HDLBP Vigilin yes no 3 0.03501 35.908 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2389900 0 2389900 2389900 0 2389900 0 0 0 8029 154 8213 21206 33257 33257 1 LHPEMSNLDLTK PYFRFFMEKRAKYAKLHPEMSNLDLTKILS YAKLHPEMSNLDLTKILSKKYKELPEKKKM K L H T K I 0 0 1 1 0 0 1 0 1 0 3 1 1 0 1 1 1 0 0 0 0 0 12 0 1396.7021 E9PKP7;P17480;A8K962;B4DNQ1;Q05BZ1;Q9BQR2;E9PMM2 E9PKP7 133 144 UBTF Nucleolar transcription factor 1 yes no 2;3 5.8802E-05 89.171 4 0.9078 1.0236 7.3245 4 Median 0.9078 1.0236 7.3245 4 0 Median NaN NaN NaN 0 0 Median 453710000 234040000 219670000 453710000 234040000 219670000 0 0 0 8030 1244 8214 21207;21208;21209;21210 33258;33259;33260;33261;33262 33260 951 5 LHPFHVIR MVKSCGKDGFHIRVRLHPFHVIRINKMLSC GFHIRVRLHPFHVIRINKMLSCAGADRLQT R L H I R I 0 1 0 0 0 0 0 0 2 1 1 0 0 1 1 0 0 0 0 1 0 0 8 0 1017.5872 F8W7C6;A0A087WV22;H7C123;H7C2C5;H7C2U2;X1WI28;X5D2T3;P27635;B8A6G2;X5D2W5;A6QRI9;Q96L21 X1WI28 91 98 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like no no 3 0.0087905 53.166 2 1.0596 0.86949 4.1833 2 Median NaN NaN NaN 0 0 Median 1.0596 0.86949 4.1833 2 0 Median 29856000 12931000 16926000 0 0 0 29856000 12931000 16926000 8031 1524;1266 8215 21211;21212 33263;33264;33265 33263 3 LHPGELADTPK SELELMTYINENWDRLHPGELADTPKSERY NWDRLHPGELADTPKSERYEHVLEALNDYK R L H P K S 1 0 0 1 0 0 1 1 1 0 2 1 0 0 2 0 1 0 0 0 0 0 11 0 1176.6139 Q9Y483;Q96G26;B4DZG1;B4DZ69 Q9Y483 303 313 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.0031487 60.342 2 1.0304 1.0691 1.719 2 Median 1.0304 1.0691 1.719 2 0 Median NaN NaN NaN 0 0 Median 62503000 32517000 29986000 62503000 32517000 29986000 0 0 0 8032 2143 8216 21213;21214 33266;33267;33268;33269 33268 4 LHPVILASIVDSYER GPALPGPFPGGRVVRLHPVILASIVDSYER LHPVILASIVDSYERRNEGAARVIGTLLGT R L H E R R 1 1 0 1 0 0 1 0 1 2 2 0 0 0 1 2 0 0 1 2 0 0 15 0 1710.9305 B4DMT5;B3KSH1;O00303;E9PQV8 B4DMT5 44 58 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 3 0.00012882 73.022 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19398000 0 19398000 19398000 0 19398000 0 0 0 8033 939 8217 21215;21216;21217 33270;33271;33272 33270 3 LHSFESHK DKTVALWDLRNLKLKLHSFESHKDEIFQVQ LRNLKLKLHSFESHKDEIFQVQWSPHNETI K L H H K D 0 0 0 0 0 0 1 0 2 0 1 1 0 1 0 2 0 0 0 0 0 0 8 0 983.48248 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5;B4DRT0 Q09028 310 317 RBBP4 Histone-binding protein RBBP4 yes no 2 0.0082471 79.451 1 0.81177 0.81705 NaN 1 Median 0.81177 0.81705 NaN 1 0 Median NaN NaN NaN 0 0 Median 7258700 3932400 3326400 7258700 3932400 3326400 0 0 0 8034 1695 8218 21218 33273 33273 1 LHSIILANPQDNENFIATVR GETPTVDTIDSYMNRLHSIILANPQDNENF LANPQDNENFIATVREVVNRLDR_______ R L H V R E 2 1 3 1 0 1 1 0 1 3 2 0 0 1 1 1 1 0 0 1 0 0 20 0 2264.1913 B4DMG1;Q9NP66;H0YKL0 B4DMG1 207 226 HMG20A High mobility group protein 20A yes no 3 8.3431E-10 96.562 2 2 0.9922 0.82111 15.712 4 Median 0.89428 0.93974 22.998 2 0 Median 1.0038 0.81812 4.4296 2 0 Median 84853000 41127000 43726000 57841000 27615000 30225000 27013000 13512000 13501000 8035 1005 8219 21219;21220;21221;21222 33274;33275;33276;33277;33278;33279;33280 33280 7 LHSYSSPSTK GSREYDTGGGSSSSRLHSYSSPSTKNSSGG SSSSRLHSYSSPSTKNSSGGGESRSSSRGG R L H T K N 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 4 1 0 1 0 0 0 10 0 1105.5404 A0A087WWP4;Q96T37 A0A087WWP4 79 88 RBM15 Putative RNA-binding protein 15 yes no 2 0.014744 58.433 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1729500 0 1729500 1729500 0 1729500 0 0 0 8036 427 8220 21223 33281 33281 1 LHTFESHK DKTVALWDLRNLKLKLHTFESHKDEIFQVH LRNLKLKLHTFESHKDEIFQVHWSPHNETI K L H H K D 0 0 0 0 0 0 1 0 2 0 1 1 0 1 0 1 1 0 0 0 0 0 8 0 997.49813 Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP02 Q6FHQ0 309 316 RBBP7 Histone-binding protein RBBP7 yes no 2 0.011754 69.198 1 0.98081 0.9879 NaN 1 Median 0.98081 0.9879 NaN 1 0 Median NaN NaN NaN 0 0 Median 7220500 3547700 3672800 7220500 3547700 3672800 0 0 0 8037 1771 8221 21224 33282 33282 1 LHTLEEEK KREKINELLKYIEERLHTLEEEKEELAQYQ LKYIEERLHTLEEEKEELAQYQKWDKMRRA R L H E K E 0 0 0 0 0 0 3 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 997.50803 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 200 207 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 5.3891E-30 198.07 2 1 1.0141 1.0829 15.724 2 Median 1.0141 1.0829 15.724 2 0 Median NaN NaN NaN 0 0 Median 58369000 26374000 31995000 56228000 26374000 29855000 2140500 0 2140500 8038 803 8222 21225;21226;21227 33283;33284;33285;33286;33287 33285 5 LHVAILER PPGYHPLDVEKEWGKLHVAILEREKQLRSE VEKEWGKLHVAILEREKQLRSEFERLECLQ K L H E R E 1 1 0 0 0 0 1 0 1 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 949.5709 Q15149;E9PMV1 Q15149 510 517 PLEC Plectin yes no 2 0.008243 79.469 1 1.4466 1.4999 NaN 1 Median 1.4466 1.4999 NaN 1 0 Median NaN NaN NaN 0 0 Median 21882000 7955000 13927000 21882000 7955000 13927000 0 0 0 8039 1754 8223 21228 33288 33288 1 LHVDPENFR LKGAFASLSELHCDKLHVDPENFRLLGNVL ELHCDKLHVDPENFRLLGNVLVVVLARRFG K L H F R L 0 1 1 1 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 1125.5567 CON__Q3SX09;Q4TZM4;Q9BWU5;Q8IZI0;Q8IUL9;Q6V0K9;Q6J1Z7;Q670S4;Q52MT0;Q4F786;Q3LR79;Q0Z944;E9NGZ5;D1MGQ0;B3VL05;B2M1S8;Q9BWV6;Q9GZL9;Q9UK54;B3VL86;E9PFT6;D9YZU5;C8C504;A0N071;Q14473;P68871;P02042;Q5XTR9;Q3Y9I8;Q4TWB7;Q4JLR8;B2M1S6;A1YZ08;A0A1B4WRL5 CON__Q3SX09 151 159 HBB;HBD;HBD/HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta yes no 2;3 6.515E-06 94.114 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 328370000 328370000 0 328370000 328370000 0 0 0 0 + 8040 1172 8224 21229;21230;21231 33289;33290;33291 33289 3 LHVEVAK LALKLLDEDEIRGYKLHVEVAKFQLKGEYD EDEIRGYKLHVEVAKFQLKGEYDASKKKKK K L H A K F 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 7 0 794.46504 O43719;B4DRS4;Q5H919;Q5H918 O43719 211 217 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.059659 50.632 1 0.72731 0.57539 NaN 1 Median NaN NaN NaN 0 0 Median 0.72731 0.57539 NaN 1 0 Median 3037900 1708900 1329000 0 0 0 3037900 1708900 1329000 8041 1388 8225 21232 33292 33292 1 LHVEYNK EQKNIKDKLENEQEKLHVEYNKLCESLEEL KLENEQEKLHVEYNKLCESLEELQNLNGKL K L H N K L 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 901.46577 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 654 660 PHF14 PHD finger protein 14 yes no 2 0.0045875 132.96 2 1 0.77567 0.82423 26.237 3 Median 0.71053 0.74015 15.217 2 0 Median 1.4188 1.1203 NaN 1 0 Median 67001000 38905000 28096000 63081000 37380000 25701000 3919800 1525200 2394600 8042 590 8226 21233;21234;21235 33293;33294;33295;33296 33293 4 LHVIPR KDCSIIKWSVESGRKLHVIPRAKKGAEGKP KWSVESGRKLHVIPRAKKGAEGKPPGHSSH K L H P R A 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 6 0 733.45989 O43818 O43818 181 186 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.034273 112.58 2 2 0.90308 0.87529 6.0119 4 Median 0.74038 0.8504 9.3672 2 0 Median 1.0487 0.87529 3.5155 2 0 Median 379940000 207040000 172900000 342930000 189240000 153690000 37008000 17796000 19211000 8043 1389 8227 21236;21237;21238;21239 33297;33298;33299;33300 33297 4 LHVLLFK QRLEANHGLLVARGKLHVLLFKASPTLQRF GLLVARGKLHVLLFKASPTLQRFAVRTQLS K L H F K A 0 0 0 0 0 0 0 0 1 0 3 1 0 1 0 0 0 0 0 1 0 0 7 0 868.55346 E9PIE3;Q969G5 E9PIE3 122 128 PRKCDBP Protein kinase C delta-binding protein yes no 2 0.01285 83.229 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8044 1239 8228 21240 33301 33301 1 LHVTALDYLAPYAK LGTCFGKFTKTHKFRLHVTALDYLAPYAKY RLHVTALDYLAPYAKYKVWIKPGAEQSFLY R L H A K Y 3 0 0 1 0 0 0 0 1 0 3 1 0 0 1 0 1 0 2 1 0 0 14 0 1573.8504 Q9Y221;B3KM49;J3QLW7;J3QRD6;J3QRR4 Q9Y221 81 94 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2;3 1.5425E-57 196.88 3 4 1.2162 1.0086 22.384 7 Median 1.142 1.2774 38.612 3 0 Plateau 1.2242 1.0024 1.9529 4 0 Median 328460000 157420000 171030000 200360000 99571000 100790000 128090000 57850000 70240000 8045 2119 8229 21241;21242;21243;21244;21245;21246;21247 33302;33303;33304;33305;33306;33307;33308;33309;33310;33311;33312;33313;33314;33315;33316;33317;33318;33319 33316 18 LHYAFQTEGK ERDILVEVNHPFIVKLHYAFQTEGKLYLIL PFIVKLHYAFQTEGKLYLILDFLRGGDLFT K L H G K L 1 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 10 0 1192.5877 B4DKZ2;B4DG22;B7ZB17;P51812;B1AXG1;B1AXG2;B7Z2K7;F2Z2J1;Q15349;Q9UK32;D6RHW7;E9PMM7;D6R910;D6RA62;D6RE03;B7Z3B5;E9PAN7;E9PGT3;Q15418 B4DKZ2 104 113 RPS6KA3;RPS6KA2;RPS6KA6;RPS6KA1 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6;Ribosomal protein S6 kinase alpha-1 no no 2 0.039394 39.022 1 1.1418 0.96525 NaN 1 Median NaN NaN NaN 0 0 Median 1.1418 0.96525 NaN 1 0 Median 1185900 694130 491810 0 0 0 1185900 694130 491810 8046 971;1235 8230 21248 33320 33320 1 LHYCVSCAIHSK ASVFDAYVLPKLYVKLHYCVSCAIHSKVVR YVKLHYCVSCAIHSKVVRNRSREARKDRTP K L H S K V 1 0 0 0 2 0 0 0 2 1 1 1 0 0 0 2 0 0 1 1 0 0 12 0 1473.6857 A0A024RB14;P62854;Q5JNZ5;Q76N56 A0A024RB14 71 82 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 2;3 6.4112E-11 116.3 3 2 1.3853 1.0763 27.727 3 Median 0.60892 0.68131 NaN 1 0 Median 1.3918 1.0997 3.0427 2 0 Median 116910000 65293000 51616000 84728000 51642000 33087000 32180000 13651000 18529000 8047 319 8231 21249;21250;21251;21252;21253 33321;33322;33323;33324;33325;33326;33327;33328 33321 8 LHYYCEDDGK REQQDAKLCERHREKLHYYCEDDGKLLCVM RHREKLHYYCEDDGKLLCVMCRESREHRPH K L H G K L 0 0 0 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 2 0 0 0 10 0 1298.5238 A0A024RCP3;Q12899;A2AE48;A2AE50;Q5SPU2 A0A024RCP3 109 118 TRIM26 Tripartite motif-containing protein 26 yes no 2 0.016683 56.432 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4549000 4549000 0 4549000 4549000 0 0 0 0 8048 365 8232 21254 33329 33329 1 LIADVAPSAIR ______________________________ GLAKLIADVAPSAIRENDIKSYFGRKVAID K L I I R E 3 1 0 1 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 11 0 1124.6554 Q6FHX6;P39748;F5H1Y3 Q6FHX6 9 19 FEN1 Flap endonuclease 1 yes no 2 0.0023522 62.823 2 2 1.5265 0.55129 64.249 3 Plateau 1.5316 1.6772 NaN 1 0 Median 0.64164 0.55117 0.031696 2 0 Median 57366000 14930000 42436000 51642000 11701000 39941000 5723800 3228800 2495000 8049 1555 8233 21255;21256;21257;21258 33330;33331;33332;33333;33334 33331 5 LIAGNKPVSFLTAQQLQQLQQQGQATQVR LGRNIILTTMPAGTKLIAGNKPVSFLTAQQ QLQQLQQQGQATQVRIQTVPASHLQQGTAS K L I V R I 3 1 1 0 0 9 0 2 0 1 4 1 0 1 1 1 2 0 0 2 0 0 29 1 3192.7367 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1232 1260 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 8.8431E-07 41.65 1 2 1.6881 1.4381 9.392 2 Median NaN NaN NaN 0 0 Median 1.6881 1.4381 9.392 2 0 Median 26112000 12082000 14029000 4215200 4215200 0 21896000 7867100 14029000 8050 135 8234 21259;21260;21261 33335;33336;33337;33338;33339;33340 33339 6 LIAHAGSLLNLAK APNVTVMVGELVGARLIAHAGSLLNLAKHA ARLIAHAGSLLNLAKHAASTVQILGAEKAL R L I A K H 3 0 1 0 0 0 0 1 1 1 4 1 0 0 0 1 0 0 0 0 0 0 13 0 1319.7925 Q9Y2X3;B3KN82 Q9Y2X3 298 310 NOP58 Nucleolar protein 58 yes no 2;3 3.114E-09 98.407 4 3 0.82528 0.86045 7.4761 7 Median 0.79121 0.9538 5.5901 4 0 Linear 0.97264 0.83448 4.4302 3 0 Plateau 936910000 503170000 433730000 773380000 421010000 352370000 163530000 82169000 81363000 8051 2129 8235 21262;21263;21264;21265;21266;21267;21268 33341;33342;33343;33344;33345;33346;33347;33348;33349;33350;33351;33352;33353;33354;33355;33356;33357;33358;33359 33349 19 LIAHAGSLTNLAK APSLSALIGEAVGARLIAHAGSLTNLAKYP ARLIAHAGSLTNLAKYPASTVQILGAEKAL R L I A K Y 3 0 1 0 0 0 0 1 1 1 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1307.7561 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 308 320 NOP56 Nucleolar protein 56 yes no 2;3 4.0869E-10 96.756 6 4 0.94158 0.88218 10.256 10 Median 0.82678 0.90449 7.2495 6 0 Median 0.96699 0.78193 3.0618 4 0 Median 641570000 344050000 297520000 522440000 281640000 240800000 119130000 62407000 56726000 8052 785 8236 21269;21270;21271;21272;21273;21274;21275;21276;21277;21278 33360;33361;33362;33363;33364;33365;33366;33367;33368;33369;33370 33361 11 LIALGEENATLK SREKRRLNDLVLENKLIALGEENATLKAEL ENKLIALGEENATLKAELLSLKLKFGLISS K L I L K A 2 0 1 0 0 0 2 1 0 1 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1270.7133 D9IVD5;A0A024R241;Q16649 D9IVD5 105 116 NFIL3 Nuclear factor interleukin-3-regulated protein yes no 2 0.022819 50.194 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3526000 3526000 0 3526000 3526000 0 0 0 0 8053 103 8237 21279 33371 33371 1 LIALLEVLSQK KRIANLQTDLSDGLRLIALLEVLSQKKMHR DGLRLIALLEVLSQKKMHRKHNQRPTFRQM R L I Q K K 1 0 0 0 0 1 1 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 11 0 1225.7646 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98;O75369;A0A024R321 P21333 77 87 FLNA;FLNB Filamin-A;Filamin-B no no 2 4.4881E-08 118.26 2 1.6625 1.7196 1.879 2 Median 1.6625 1.7196 1.879 2 0 Median NaN NaN NaN 0 0 Median 32285000 13443000 18842000 32285000 13443000 18842000 0 0 0 8054 1504;1402 8238 21280;21281 33372;33373;33374;33375 33374 4 LIANNTTVER NRELSQKTPPSMRLKLIANNTTVERRFSSW SMRLKLIANNTTVERRFSSWIGGSILASLG K L I E R R 1 1 2 0 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1129.6091 Q6FI97;Q53FS0;O96019;D3DNS0 Q6FI97 380 389 BAF53A;ACTL6A Actin-like protein 6A yes no 2 3.6847E-16 154.49 2 1 0.80202 0.91437 66.984 3 Median 0.7867 0.89802 2.5517 2 0 Median 3.3539 2.864 NaN 1 0 Median 267850000 159270000 108570000 263320000 158290000 105030000 4526300 985860 3540500 8055 1434 8239 21282;21283;21284 33376;33377;33378;33379;33380 33378 5 LIAQNLELNETIK QHNIFLDQMTIDEDKLIAQNLELNETIKIG DKLIAQNLELNETIKIGLTKLNCFLEQDLK K L I I K I 1 0 2 0 0 1 2 0 0 2 3 1 0 0 0 0 1 0 0 0 0 0 13 0 1497.8403 P52732;B2RAM6;Q59GZ5 P52732 891 903 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 9.3579E-06 100.88 2 2.165 2.2556 22.921 2 Median 2.165 2.2556 22.921 2 0 Median NaN NaN NaN 0 0 Median 67034000 22763000 44271000 67034000 22763000 44271000 0 0 0 8056 1602 8240 21285;21286 33381;33382;33383;33384 33383 4 LIASVAGSVER TGFMRGHGTYMGEEKLIASVAGSVERVNKL GEEKLIASVAGSVERVNKLICVKALKTRYI K L I E R V 2 1 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1100.619 Q13868;A3KFL5;A3KFL2;B4E001;A3KFL1 Q13868 52 62 EXOSC2 Exosome complex component RRP4 yes no 2 0.00044305 78.098 2 2 0.92729 0.88111 6.1048 4 Median 0.87907 0.90444 3.1066 2 0 Median 0.97986 0.8376 6.5736 2 0 Median 60453000 33045000 27408000 50893000 28385000 22508000 9560800 4660200 4900600 8057 1722 8241 21287;21288;21289;21290 33385;33386;33387;33388;33389;33390;33391;33392 33389 8 LICCDILDVLDK KMIREYRQMVETELKLICCDILDVLDKHLI ELKLICCDILDVLDKHLIPAANTGESKVFY K L I D K H 0 0 0 3 2 0 0 0 0 2 3 1 0 0 0 0 0 0 0 1 0 0 12 0 1475.7364 V9HW98;P62258;G9K389;G9K388;B7ZA86;B4DJB0;K7EIT4 V9HW98 95 106 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 2 4.3404E-08 109.42 2 1.5379 1.5087 NaN 1 Median 1.5379 1.5087 NaN 1 0 Median NaN NaN NaN 0 0 Median 16056000 3134300 12922000 16056000 3134300 12922000 0 0 0 8058 1637 8242 21291;21292 33393;33394 33394 2 LIDFLECGK DLERGVEICIATPGRLIDFLECGKTNLRRT IATPGRLIDFLECGKTNLRRTTYLVLDEAD R L I G K T 0 0 0 1 1 0 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1093.5478 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3KRZ1;J3QSF1 B4DN41 217 225 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0010522 90.657 3 1.2834 1.3169 NaN 1 Median 1.2834 1.3169 NaN 1 0 Median NaN NaN NaN 0 0 Median 41907000 23949000 17958000 41907000 23949000 17958000 0 0 0 8059 1009 8243 21293;21294;21295 33395;33396;33397;33398 33398 4 LIDFLESGK DLERGVEICIATPGRLIDFLESGKTNLRRC IATPGRLIDFLESGKTNLRRCTYLVLDEAD R L I G K T 0 0 0 1 0 0 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1020.5492 Q59F66;Q92841;B4DZQ7 Q59F66 307 315 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.0031194 75.696 3 2 0.84895 0.69181 10.059 2 Median NaN NaN NaN 0 0 Median 0.84895 0.69181 10.059 2 0 Median 5462100 2699600 2762400 0 0 0 5462100 2699600 2762400 8060 1801 8244 21296;21297;21298;21299;21300 33399;33400;33401;33402;33403 33400 5 LIDHLENTK ALAKKPHIIIATPGRLIDHLENTKGFNLRA IATPGRLIDHLENTKGFNLRALKYLVMDEA R L I T K G 0 0 1 1 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1081.5768 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9 Q53GJ1 146 154 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2;3 6.8229E-06 130.66 3 1.0287 1.1187 2.5032 3 Median 1.0287 1.1187 2.5032 3 0 Median NaN NaN NaN 0 0 Median 193730000 94500000 99232000 193730000 94500000 99232000 0 0 0 8061 313 8245 21301;21302;21303 33404;33405;33406;33407 33407 4 LIDIFYPGDQQSVTFGTK VEGLFDSPPGSDDAKLIDIFYPGDQQSVTF IFYPGDQQSVTFGTKSRVGMGGMEAKVKAA K L I T K S 0 0 0 2 0 2 0 2 0 2 1 1 0 2 1 1 2 0 1 1 0 0 18 0 2028.0204 P54886 P54886 283 300 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 1.8715E-09 88.552 2 2.3425 2.5812 NaN 1 Median 2.3425 2.5812 NaN 1 0 Median NaN NaN NaN 0 0 Median 69251000 30201000 39049000 69251000 30201000 39049000 0 0 0 8062 1611 8246 21304;21305 33408;33409;33410 33410 3 LIDIGNSCR GLQEREVKCVEDVLKLIDIGNSCRTSGQTS VEDVLKLIDIGNSCRTSGQTSANAHSSRSH K L I C R T 0 1 1 1 1 0 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1046.5179 B0AZS5;O00139;B4DM85;H0Y8H2 B0AZS5 367 375 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 0.013268 56.729 1 0.51675 0.56604 NaN 1 Median 0.51675 0.56604 NaN 1 0 Median NaN NaN NaN 0 0 Median 31131000 25174000 5957400 31131000 25174000 5957400 0 0 0 8063 804 8247 21306 33411 33411 1 LIDLCQPTQK MESIKRLYPGSVYGRLIDLCQPTQKKYQIA SVYGRLIDLCQPTQKKYQIAVTKVLGKNMD R L I Q K K 0 0 0 1 1 2 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 0 1214.6329 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709 Q14683 519 528 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0022483 69.954 2 0.71531 0.72221 24.361 2 Median 0.71531 0.72221 24.361 2 0 Median NaN NaN NaN 0 0 Median 13914000 7507900 6406100 13914000 7507900 6406100 0 0 0 8064 1739 8248 21307;21308 33412;33413;33414;33415 33414 4 LIDLHSPSEIVK GSKTWDRFQMRIHKRLIDLHSPSEIVKQIT HKRLIDLHSPSEIVKQITSISIEPGVEVEV R L I V K Q 0 0 0 1 0 0 1 0 1 2 2 1 0 0 1 2 0 0 0 1 0 0 12 0 1349.7555 P60866;G3XAN0 P60866 88 99 RPS20 40S ribosomal protein S20 yes no 2;3 0.00020103 88.056 3 1 1.259 1.436 19.181 4 Median 1.2452 1.4633 2.357 3 0 Median 1.2729 0.98841 NaN 1 0 Median 817610000 353400000 464210000 802930000 347360000 455570000 14678000 6038400 8639900 8065 1625 8249 21309;21310;21311;21312 33416;33417;33418;33419;33420;33421;33422 33419 7 LIEAGEQLGFDYGER HQDLRFPRIAFFSTRLIEAGEQLGFDYGER LIEAGEQLGFDYGERFWDIKGKLFSCRCGS R L I E R F 1 1 0 1 0 1 3 3 0 1 2 0 0 1 0 0 0 0 1 0 0 0 15 0 1695.8104 A0A1B0GV09;Q9H9B1;Q71M33 A0A1B0GV09 1200 1214 EHMT1;FP13812 Histone-lysine N-methyltransferase EHMT1 yes no 2 2.2747E-10 119.39 2 2 0.67268 0.70385 24.175 2 Median 0.67268 0.70385 24.175 2 0 Median NaN NaN NaN 0 0 Median 40349000 14096000 26254000 37256000 14096000 23160000 3093500 0 3093500 8066 631 8250 21313;21314;21315;21316 33423;33424;33425;33426;33427;33428 33426 6 LIEDEFIIDESDQSFASR AATAPPHSCPPDDTKLIEDEFIIDESDQSF DEFIIDESDQSFASRSWITIPRKAGSLKQR K L I S R S 1 1 0 3 0 1 3 0 0 3 1 0 0 2 0 3 0 0 0 0 0 0 18 0 2112.9851 Q03188;H0Y8J2 Q03188 298 315 CENPC Centromere protein C yes no 2 3.2614E-05 64.65 3 1 1.0631 0.99368 18.262 2 Median 0.85353 0.8733 NaN 1 0 Median 1.3241 1.1306 NaN 1 0 Median 16029000 8378900 7650100 10314000 6333700 3979800 5715500 2045200 3670300 8067 1681 8251 21317;21318;21319;21320 33429;33430;33431;33432;33433;33434 33430 6 LIEDNEYTAR GENLVCKVADFGLARLIEDNEYTARQGAKF FGLARLIEDNEYTARQGAKFPIKWTAPEAA R L I A R Q 1 1 1 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1222.583 Q9H7V3;B3KPS6;B2RA70;J3QRU1;P12931;P06241;P07947;Q9P134;B3KUV3;A0A0S2Z3Y4;A0A0S2Z3Y8;Q573B4;B4DZS7;A0A0S2Z3T3;P06239 Q9H7V3 128 137 YES1;SRC;FYN;LCK Non-specific protein-tyrosine kinase;Proto-oncogene tyrosine-protein kinase Src;Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Yes;Tyrosine-protein kinase Lck yes no 2 0.0040971 73.985 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17597000 0 17597000 17597000 0 17597000 0 0 0 8068 870 8252 21321;21322 33435;33436 33436 2 LIEIENFK ______________________________ ______________________________ K L I F K S 0 0 1 0 0 0 2 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5542 Q14683;A8K7A6;Q6P2R1;B7Z709;Q68EN4;Q7Z4C6;V9GYN9 Q14683 6 13 SMC1A Structural maintenance of chromosomes protein 1A yes no 2 0.041784 53.166 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2103000 0 2103000 0 0 0 2103000 0 2103000 8069 1739 8253 21323 33437 33437 1 LIEQEEYLNVQVK EMRNTLEKFTASIQRLIEQEEYLNVQVKEL QRLIEQEEYLNVQVKELEANVLATAPDKKK R L I V K E 0 0 1 0 0 2 3 0 0 1 2 1 0 0 0 0 0 0 1 2 0 0 13 0 1603.8457 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 828 840 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 3.324E-89 234.92 1 2 1.8321 1.5564 27.23 3 Median 0.84567 0.98391 NaN 1 0 Median 1.8478 1.576 1.7758 2 0 Median 386760000 180420000 206340000 239470000 129940000 109520000 147300000 50482000 96814000 8070 2070 8254 21324;21325;21326 33438;33439;33440;33441;33442;33443;33444;33445;33446;33447;33448;33449 33441 12 LIETTANMNSSYVK SALIVPKEMIKKAKKLIETTANMNSSYVKF KLIETTANMNSSYVKFLKQATDNSEISSAT K L I V K F 1 0 2 0 0 0 1 0 0 1 1 1 1 0 0 2 2 0 1 1 0 0 14 0 1569.7709 A4LAA3;P46100;A0A096LNW1;A0A096LNL9;A0A096LNN3 A4LAA3 359 372 ATRX Transcriptional regulator ATRX yes no 2 1.7644E-06 101.93 2 1 1.3283 1.3966 10.744 2 Median 1.3283 1.3966 10.744 2 0 Median NaN NaN NaN 0 0 Median 36338000 14973000 21366000 35761000 14973000 20788000 577750 0 577750 8071 672 8255;8256 21327;21328;21329 33450;33451;33452;33453 33452 523 4 LIEVDDER ______________________________ PATGCQKLIEVDDERKLRTFYEKRMATEVA K L I E R K 0 1 0 2 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 987.48729 Q96DV6;A2A3R6;P62753;A2A3R7 Q96DV6 15 22 RPS6 40S ribosomal protein S6 yes no 2 0.0036078 96.253 2 2 1.0589 1.072 23.846 4 Median 0.72729 0.86165 6.9909 2 0 Median 1.487 1.2934 2.6524 2 0 Median 2546000000 1414100000 1131900000 2270700000 1300600000 970120000 275250000 113460000 161790000 8072 649 8257 21330;21331;21332;21333 33454;33455;33456;33457;33458;33459;33460;33461;33462;33463;33464;33465;33466;33467;33468 33460 15 LIEVDDERK ______________________________ ATGCQKLIEVDDERKLRTFYEKRMATEVAA K L I R K L 0 1 0 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1115.5823 Q96DV6;A2A3R6;P62753;A2A3R7 Q96DV6 15 23 RPS6 40S ribosomal protein S6 yes no 2;3 2.6427E-11 172.25 11 5 0.82593 0.99702 50.8 13 Median 0.73023 0.87054 57.088 8 0 Median 1.3601 1.2063 6.3745 5 0 Median 11928000000 6092300000 5835900000 10388000000 5460700000 4927000000 1540400000 631580000 908840000 8073 649 8258 21334;21335;21336;21337;21338;21339;21340;21341;21342;21343;21344;21345;21346;21347;21348;21349 33469;33470;33471;33472;33473;33474;33475;33476;33477;33478;33479;33480;33481;33482;33483;33484;33485;33486;33487;33488;33489;33490;33491;33492;33493;33494;33495;33496;33497 33478 26 LIFSNAK AGNYDSPLEFCKDIRLIFSNAKAYTPNKRS LEFCKDIRLIFSNAKAYTPNKRSKIYSMTL R L I A K A 1 0 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 791.45414 Q9NSI6;Q5R2U7;H7C409 Q9NSI6 1384 1390 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.036991 70.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8074 2068 8259 21350 33498 33498 1 LIFSNSK AGNYESPMELCKDVRLIFSNSKAYTPSKRS MELCKDVRLIFSNSKAYTPSKRSRIYSMSL R L I S K A 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 7 0 807.44905 Q8WWQ0;Q9NWP3 Q8WWQ0 1387 1393 PHIP PH-interacting protein yes no 1;2 0.010985 110.81 3 1 0.85421 0.98663 19.853 3 Median 0.80208 0.91869 10.091 2 0 Median 1.5549 1.2663 NaN 1 0 Median 372030000 214460000 157570000 364660000 211810000 152850000 7374500 2648200 4726400 8075 1942 8260 21351;21352;21353;21354 33499;33500;33501;33502;33503 33500 5 LIGEYGLR PRRPFEKSRLDQELKLIGEYGLRNKREVWR RLDQELKLIGEYGLRNKREVWRVKFTLAKI K L I L R N 0 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 919.51272 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;F2Z3C0;A8MXK4 A0A024R4M0 31 38 RPS9 40S ribosomal protein S9 yes no 2 0.0033502 97.068 2 2 0.8681 0.87399 21.304 4 Median 0.89504 1.0488 1.2888 2 0 Median 0.84249 0.72563 1.8172 2 0 Median 725860000 371010000 354850000 659740000 335950000 323780000 66127000 35060000 31067000 8076 157 8261 21355;21356;21357;21358 33504;33505;33506;33507;33508;33509;33510;33511;33512;33513 33504 10 LIGISQR LIPGAEFRCFVKENKLIGISQRDYTQYYDH RCFVKENKLIGISQRDYTQYYDHISKQKEE K L I Q R D 0 1 0 0 0 1 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 0 7 0 785.47594 O75794;H7BZW7;X6RF82 O75794 187 193 CDC123 Cell division cycle protein 123 homolog yes no 2 0.026873 86.866 1 3.4009 3.7183 NaN 1 Median 3.4009 3.7183 NaN 1 0 Median NaN NaN NaN 0 0 Median 30476000 5249300 25226000 30476000 5249300 25226000 0 0 0 8077 1413 8262 21359 33514;33515 33515 2 LIGLSATLPNYEDVATFLR ARAIRNIEMTQEDVRLIGLSATLPNYEDVA SATLPNYEDVATFLRVDPAKGLFYFDNSFR R L I L R V 2 1 1 1 0 0 1 1 0 1 4 0 0 1 1 1 2 0 1 1 0 0 19 0 2092.1205 O75643;A4FU77;Q9H8B9 O75643 648 666 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.3515E-66 173.72 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 266870000 131660000 135210000 266870000 131660000 135210000 0 0 0 8078 1411 8263 21360;21361 33516;33517;33518 33516 3 LIGPLSHSILTEAIK GIIISDLTMEMNRFRLIGPLSHSILTEAIK LIGPLSHSILTEAIKAASVHTVGEDTEETP R L I I K A 1 0 0 0 0 0 1 1 1 3 3 1 0 0 1 2 1 0 0 0 0 0 15 0 1590.9345 Q96F88;Q99575 Q96F88 434 448 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 0.0013351 78.069 3 2 0.43796 0.39594 21.303 4 Median 0.33176 0.33463 1.0236 2 0 Median 0.60252 0.48218 5.0999 2 0 Median 80270000 56757000 23512000 54734000 41524000 13209000 25536000 15233000 10303000 8079 1965 8264 21362;21363;21364;21365;21366 33519;33520;33521;33522;33523;33524 33519 6 LIGPNCPGVINPGECK MVRVKHKLLRQEKTRLIGPNCPGVINPGEC IGPNCPGVINPGECKIGIMPGHIHKKGRIG R L I C K I 0 0 2 0 2 0 1 3 0 2 1 1 0 0 3 0 0 0 0 1 0 0 16 0 1723.8386 Q6IAL5;B2R8A1;A8K4W7;P53597;B7Z438 Q6IAL5 154 169 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 2 0.00018698 60.49 1 2 1.685 1.7504 48.768 3 Plateau 1.685 1.7504 NaN 1 0 Median 0.94878 0.75759 9.0212 2 0 Median 22721000 8326900 14394000 16957000 5605200 11352000 5763200 2721700 3041500 8080 743 8265 21367;21368;21369 33525;33526;33527;33528 33525 4 LIGQIVSSITASLR RNLDIERPTYTNLNRLIGQIVSSITASLRF RLIGQIVSSITASLRFDGALNVDLTEFQTN R L I L R F 1 1 0 0 0 1 0 1 0 3 2 0 0 0 0 3 1 0 0 1 0 0 14 0 1456.8613 Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2;F8VQQ4 Q71U36 230 243 TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain yes no 2 1.8578E-29 151.79 3 0.36794 0.3668 1.3697 3 Median 0.36794 0.3668 1.3697 3 0 Median NaN NaN NaN 0 0 Median 35633000 24639000 10994000 35633000 24639000 10994000 0 0 0 8081 1869 8266 21370;21371;21372 33529;33530;33531;33532 33530 4 LIGVANQK EEALENVIKSTKPGKLIGVANQKMIELLAD KSTKPGKLIGVANQKMIELLADNINLGDPS K L I Q K M 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 841.50215 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1 B2RWN5 656 663 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00060846 129.96 1 2 1.1656 0.95042 6.3854 3 Median 0.9483 1.0601 NaN 1 0 Median 1.1807 0.94912 0.1937 2 0 Median 120650000 59199000 61450000 102620000 50928000 51697000 18024000 8271400 9753100 8082 897 8267 21373;21374;21375 33533;33534;33535;33536;33537;33538 33534 6 LIGVYTDFAFR ADEEKESPVEFTGHKLIGVYTDFAFRITPR TGHKLIGVYTDFAFRITPRNRESHNKILRD K L I F R I 1 1 0 1 0 0 0 1 0 1 1 0 0 2 0 0 1 0 1 1 0 0 11 0 1300.6816 Q5SY16 Q5SY16 496 506 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 0.003328 60.019 1 1.6023 1.6185 NaN 1 Median 1.6023 1.6185 NaN 1 0 Median NaN NaN NaN 0 0 Median 10022000 4973900 5047800 10022000 4973900 5047800 0 0 0 8083 1818 8268 21376 33539 33539 1 LIGWGQIR GEKIALSRRVEKHWRLIGWGQIRRGVTIKP RVEKHWRLIGWGQIRRGVTIKPTVDDD___ R L I I R R 0 1 0 0 0 1 0 2 0 2 1 0 0 0 0 0 0 1 0 0 0 0 8 0 941.54469 P41091;Q2VIR3 P41091 453 460 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.016651 60.961 1 1.0592 1.0835 NaN 1 Median 1.0592 1.0835 NaN 1 0 Median NaN NaN NaN 0 0 Median 33501000 16664000 16837000 33501000 16664000 16837000 0 0 0 8084 1559 8269 21377 33540 33540 1 LIHEPSAALLAYGIGQDSPTGK ALGEAARAAGFNVLRLIHEPSAALLAYGIG ALLAYGIGQDSPTGKSNILVFKLGGTSLSL R L I G K S 3 0 0 1 0 1 1 3 1 2 3 1 0 0 2 2 1 0 1 0 0 0 22 0 2237.1692 Q0VDF9 Q0VDF9 169 190 HSPA14 Heat shock 70 kDa protein 14 yes yes 3 0.042129 11.804 2 1.0043 0.78537 23.055 2 Median NaN NaN NaN 0 0 Median 1.0043 0.78537 23.055 2 0 Median 7442200 4228100 3214100 0 0 0 7442200 4228100 3214100 8085 1697 8270 21378;21379 33541;33542 33542 2 LIHTLDDR QHKQIVRNDIKLAAKLIHTLDDRTQLWASE DIKLAAKLIHTLDDRTQLWASEPGTPPLPT K L I D R T 0 1 0 2 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 981.52434 Q9BXP5;H7C3A1 Q9BXP5 527 534 SRRT Serrate RNA effector molecule homolog yes no 3 0.0097782 51.066 1 1.616 1.6614 NaN 1 Median 1.616 1.6614 NaN 1 0 Median NaN NaN NaN 0 0 Median 21246000 7388300 13858000 21246000 7388300 13858000 0 0 0 8086 2013 8271 21380 33543 33543 1 LIIEEDTENENEK GYDRSRRKYWFLNRRLIIEEDTENENEKKI RRLIIEEDTENENEKKIWYYSTKVQLAELI R L I E K K 0 0 2 1 0 0 5 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 13 0 1574.7312 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 338 350 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 1.1717E-18 140.49 2 0.88178 0.89467 12.133 2 Median 0.88178 0.89467 12.133 2 0 Median NaN NaN NaN 0 0 Median 53197000 27478000 25719000 53197000 27478000 25719000 0 0 0 8087 1224 8272 21381;21382 33544;33545;33546;33547 33546 4 LIIQSSNGHITTTPTPTQFLCPK PDVGLLKLASPELERLIIQSSNGHITTTPT HITTTPTPTQFLCPKNVTDEQEGFAEGFVR R L I P K N 0 0 1 0 1 2 0 1 1 3 2 1 0 1 3 2 5 0 0 0 0 0 23 0 2553.3261 P05412 P05412 79 101 JUN Transcription factor AP-1 yes yes 3 0.01203 20.891 2 1.09 0.86742 7.4228 2 Median NaN NaN NaN 0 0 Median 1.09 0.86742 7.4228 2 0 Median 5367800 2448800 2918900 0 0 0 5367800 2448800 2918900 8088 1447 8273 21383;21384 33548;33549 33548 2 LILCDECNK NARCKVCRKKGEDDKLILCDECNKAFHLFC KGEDDKLILCDECNKAFHLFCLRPALYEVP K L I N K A 0 0 1 1 2 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1163.5315 Q9UIG0 Q9UIG0 1199 1207 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.00014688 95.909 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 114260000 0 114260000 107600000 0 107600000 6653200 0 6653200 8089 2103 8274 21385;21386;21387 33550;33551;33552;33553 33551 4 LILFPR SLQANVQRLKEYRSKLILFPRKPSAPKKGD QRLKEYRSKLILFPRKPSAPKKGDSSAEEL K L I P R K 0 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 6 0 757.48505 Q6NZ55;A8K4C8;P26373 Q6NZ55 124 129 RPL13 60S ribosomal protein L13 yes no 2 0.034273 112.58 3 1 0.93223 0.94748 25.436 3 Median 0.94201 1.0345 12.424 2 0 Median 0.78396 0.68417 NaN 1 0 Median 803040000 420920000 382120000 729440000 380830000 348620000 73597000 40092000 33504000 8090 733 8275 21388;21389;21390;21391 33554;33555;33556;33557;33558 33555 5 LILGPQEEK KVYKTLDTPFFSTGKLILGPQEEKGKQHVG FFSTGKLILGPQEEKGKQHVGQDILVFYVN K L I E K G 0 0 0 0 0 1 2 1 0 1 2 1 0 0 1 0 0 0 0 0 0 0 9 0 1025.5757 Q03188 Q03188 872 880 CENPC Centromere protein C yes yes 2 0.0014401 85.38 1 1 0.91534 0.87902 18.624 2 Median 0.68205 0.77057 NaN 1 0 Median 1.2284 1.0027 NaN 1 0 Median 87056000 52760000 34297000 82363000 50703000 31660000 4693300 2056900 2636400 8091 1681 8276 21392;21393 33559;33560 33559 2 LILIESR KHLERNRKDKDAKFRLILIESRIHRLARYY KDKDAKFRLILIESRIHRLARYYKTKRVLP R L I S R I 0 1 0 0 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 7 0 842.52255 P62277 P62277 115 121 RPS13 40S ribosomal protein S13 yes yes 2 0.020619 93.883 2 1.144 1.3159 0.60888 2 Median 1.144 1.3159 0.60888 2 0 Median NaN NaN NaN 0 0 Median 319700000 144160000 175530000 319700000 144160000 175530000 0 0 0 8092 1640 8277 21394;21395 33561;33562;33563;33564 33562 4 LILISTNGSFIR RTCEWTGLKFSNDGKLILISTNGSFIRLID DGKLILISTNGSFIRLIDAFKGVVMHTFGG K L I I R L 0 1 1 0 0 0 0 1 0 3 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1332.7765 A0A024R333;Q6UXN9 A0A024R333 208 219 TMEM113;WDR82 WD repeat-containing protein 82 yes no 2 0.015866 53.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8093 128 8278 21396 33565 33565 1 LILLITQVTASEK SRVKTFQKLSHLHGKLILLITQVTASEKTK GKLILLITQVTASEKTKGATSPGQKAKLVY K L I E K T 1 0 0 0 0 1 1 0 0 2 3 1 0 0 0 1 2 0 0 1 0 0 13 0 1427.8599 Q15061;Q8TB67 Q15061 572 584 WDR43 WD repeat-containing protein 43 yes no 2 9.4234E-05 93.058 4 3 1.0689 0.97687 4.1223 4 Median 0.97916 1.0101 2.0067 2 0 Median 1.1841 0.94567 1.8606 2 0 Median 51496000 23355000 28141000 26274000 11775000 14498000 25222000 11579000 13643000 8094 1752 8279 21397;21398;21399;21400;21401;21402;21403 33566;33567;33568;33569;33570;33571;33572;33573;33574;33575;33576 33572 11 LILLWYNPVTEEDVQLR LMFSGLLVSSRILSRLILLWYNPVTEEDVQ LLWYNPVTEEDVQLRHCLGVFFPVFAYASR R L I L R H 0 1 1 1 0 1 2 0 0 1 4 0 0 0 1 0 1 1 1 2 0 0 17 0 2100.1255 Q9BPX3;Q6NUR1 Q9BPX3 733 749 NCAPG Condensin complex subunit 3 yes no 2 2.25E-09 108.72 2 0.77337 0.83953 6.3505 2 Median 0.77337 0.83953 6.3505 2 0 Median NaN NaN NaN 0 0 Median 88288000 47194000 41094000 88288000 47194000 41094000 0 0 0 8095 1995 8280 21404;21405 33577;33578;33579;33580;33581;33582;33583 33583 7 LILPHVPAILQYLSK GIAENIGESITIGGRLILPHVPAILQYLSK LILPHVPAILQYLSKTTISAEKVKKKKNRA R L I S K T 1 0 0 0 0 1 0 0 1 2 4 1 0 0 2 1 0 0 1 1 0 0 15 0 1704.0338 O75691 O75691 1298 1312 UTP20 Small subunit processome component 20 homolog yes yes 3 2.4765E-06 88.282 7 1.2495 1.2691 10.117 4 Median 1.2495 1.2691 10.117 4 0 Median NaN NaN NaN 0 0 Median 57259000 34431000 22828000 57259000 34431000 22828000 0 0 0 8096 1412 8281 21406;21407;21408;21409;21410;21411;21412 33584;33585;33586;33587;33588;33589;33590;33591;33592;33593 33585 10 LILQIGR APDSLQKIESLGYNRLILQIGRGTVVPEPF IESLGYNRLILQIGRGTVVPEPFSTESFTL R L I G R G 0 1 0 0 0 1 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 811.52797 A0A096LP10;A0A096LNJ4;A0A087WX43;A0A096LNL2;D6RE84;A0A087WTT9;A0A1B0GVW6;Q9NP73 A0A096LP10 32 38 ALG13 Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 yes no 2 0.014062 85.306 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8097 460 8282 21413;21414 33594;33595 33595 2 LILYNDGDSLQYIER LCDNSVGVLFNDSTRLILYNDGDSLQYIER LILYNDGDSLQYIERDGTESYLTVSSHPNS R L I E R D 0 1 1 2 0 1 1 1 0 2 3 0 0 0 0 1 0 0 2 0 0 0 15 0 1810.9101 P53350;B2R841;B4E083;Q59GD0;D3DWF3 P53350 442 456 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 4.8022E-15 126.76 2 2 1.0476 0.99125 3.2239 4 Median 0.94381 0.99782 3.5268 2 0 Median 1.1939 0.98143 4.0001 2 0 Median 98561000 54228000 44333000 69779000 40450000 29329000 28782000 13778000 15004000 8098 1604 8283 21415;21416;21417;21418 33596;33597;33598;33599;33600;33601;33602;33603;33604 33599 9 LIMLVNEFYYGR ERPCDEDKTDSETGKLIMLVNEFYYGRHEG TGKLIMLVNEFYYGRHEGVTEKEPKTYTTF K L I G R H 0 1 1 0 0 0 1 1 0 1 2 0 1 1 0 0 0 0 2 1 0 0 12 0 1516.7748 Q8ND82;Q9UJJ2 Q8ND82 290 301 ZNF280C Zinc finger protein 280C yes no 2 0.010094 50.292 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8099 1924 8284 21419 33605 33605 1753 1 LINEGDVPHLPVNR LDGIIRELQREQDLRLINEGDVPHLPVNRA RLINEGDVPHLPVNRAYSVNGALRSPNMDI R L I N R A 0 1 2 1 0 0 1 1 1 1 2 0 0 0 2 0 0 0 0 2 0 0 14 0 1571.842 Q6RI45 Q6RI45 662 675 BRWD3 Bromodomain and WD repeat-containing protein 3 yes yes 3 0.050319 15.387 1 1.8451 1.6214 NaN 1 Median NaN NaN NaN 0 0 Median 1.8451 1.6214 NaN 1 0 Median 1663500 777040 886470 0 0 0 1663500 777040 886470 8100 1860 8285 21420 33606 33606 1 LINKPGPDTFPDYGDVLR YRGTRYPEVNRRIERLINKPGPDTFPDYGD KPGPDTFPDYGDVLRAVEKAAARHSLGLPR R L I L R A 0 1 1 3 0 0 0 2 0 1 2 1 0 1 3 0 1 0 1 1 0 0 18 1 2016.0316 Q59FG7;Q53F85;B2R7M0;A8K822;A0A024RCS3;B4E1C1;Q9UER7 Q59FG7 205 222 DAXX Death domain-associated protein 6 yes no 3 0.059719 15.766 1 0.64355 0.57766 NaN 1 Median NaN NaN NaN 0 0 Median 0.64355 0.57766 NaN 1 0 Median 2014500 1365900 648550 0 0 0 2014500 1365900 648550 8101 370 8286 21421 33607 33607 1 LINLVGESLR TDYNNNHEGREEDQRLINLVGESLRLLGNT EEDQRLINLVGESLRLLGNTFVALSDLRCN R L I L R L 0 1 1 0 0 0 1 1 0 1 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1112.6554 A0A0G2JL47;A0A024RCR6;A0A0G2JK23;P46379;F6S6P2;X6REW1;A0A0G2JJM1 A0A0G2JL47 316 325 BAT3;BAG6 Large proline-rich protein BAG6 yes no 2 0.00078086 81.338 2 1.5982 1.5858 NaN 1 Median 1.5982 1.5858 NaN 1 0 Median NaN NaN NaN 0 0 Median 20173000 5855800 14317000 20173000 5855800 14317000 0 0 0 8102 368 8287 21422;21423 33608;33609;33610;33611 33611 4 LINNNPEIFGPLK FAEFQEHEHALKALRLINNNPEIFGPLKRP LRLINNNPEIFGPLKRPIVEFSLEDRRKLK R L I L K R 0 0 3 0 0 0 1 1 0 2 2 1 0 1 2 0 0 0 0 0 0 0 13 0 1467.8086 A0A024R753;Q9NW13 A0A024R753 559 571 RBM28 RNA-binding protein 28 yes no 2 1.6519E-09 123.63 2 2 1.0758 1.0175 3.3647 4 Median 0.92339 1.046 2.3827 2 0 Median 1.2448 0.9946 1.6984 2 0 Median 263420000 130790000 132630000 225300000 114890000 110420000 38117000 15902000 22214000 8103 214 8288 21424;21425;21426;21427 33612;33613;33614;33615;33616;33617;33618;33619 33615 8 LINRPIIVFR ASVETAGDSELFLMKLINRPIIVFRGEHGF LFLMKLINRPIIVFRGEHGFIGCRKVTGTL K L I F R G 0 2 1 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 0 1 0 0 10 1 1239.7816 B3KTA3;Q16658;C9JPH9;C9JFC0;A0A0A0MSB2;B3KTM9 B3KTA3 359 368 FSCN1 Fascin yes no 3 0.0019587 61.78 1 1 2.0942 2.1348 77.983 2 Median 3.2576 3.7054 NaN 1 0 Median 1.3463 1.2299 NaN 1 0 Median 39536000 9312100 30224000 37457000 8510400 28947000 2079100 801780 1277300 8104 942 8289 21428;21429 33620;33621;33622 33620 3 LIPDGCGVK KFNADEFEDMVAEKRLIPDGCGVKYI____ MVAEKRLIPDGCGVKYI_____________ R L I V K Y 0 0 0 1 1 0 0 2 0 1 1 1 0 0 1 0 0 0 0 1 0 0 9 0 957.49535 F8W7C6;A0A087WV22;X5D7P1;X1WI28;X5D2T3;P27635 X1WI28 190 198 RPL10 60S ribosomal protein L10 no no 2 0.019553 51.059 1 1 0.94857 0.9198 10.615 2 Median 0.84166 0.9915 NaN 1 0 Median 1.0691 0.85329 NaN 1 0 Median 556420000 286500000 269920000 536310000 276710000 259590000 20116000 9791500 10324000 8105 1524;1266 8290 21430;21431 33623;33624;33625;33626 33623 4 LIPLLLSSLNDEVPEVR GWLLCLRDRYSFFHKLIPLLLSSLNDEVPE PLLLSSLNDEVPEVRQLAASLWEDVGLQWQ K L I V R Q 0 1 1 1 0 0 2 0 0 1 5 0 0 0 2 2 0 0 0 2 0 0 17 0 1906.0775 Q86Y56;B3KU91;H0Y650;H7C3B1 Q86Y56 286 302 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 2.658E-07 90.731 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3797100 0 3797100 3797100 0 3797100 0 0 0 8106 1888 8291 21432;21433 33627;33628 33627 2 LIPTAR PLVYPLAQVIIGCIKLIPTARFYPLRMHCI AQVIIGCIKLIPTARFYPLRMHCIRALTLL K L I A R F 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 6 0 669.41736 Q9Y3T9;B3KNC3;Q9H9J5;B4DY21 Q9Y3T9 445 450 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.036524 120.06 1 1.1655 1.332 NaN 1 Median 1.1655 1.332 NaN 1 0 Median NaN NaN NaN 0 0 Median 50441000 25754000 24687000 50441000 25754000 24687000 0 0 0 8107 2139 8292 21434 33629 33629 1 LIPTELR LLLVLRVFLPCDENRLIPTELRREALALQG FLPCDENRLIPTELRREALALQGSLEFDDA R L I L R R 0 1 0 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 7 0 840.5069 H0Y714;Q96G21;B8ZZ47;F8WCN0 H0Y714 30 36 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.034211 62.714 1 1.1809 1.3416 NaN 1 Median 1.1809 1.3416 NaN 1 0 Median NaN NaN NaN 0 0 Median 48799000 24763000 24036000 48799000 24763000 24036000 0 0 0 8108 1286 8293 21435 33630 33630 1 LIPTELRR LLLVLRVFLPCDENRLIPTELRREALALQG LPCDENRLIPTELRREALALQGSLEFDDAG R L I R R E 0 2 0 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 8 1 996.60801 H0Y714;Q96G21;B8ZZ47;F8WCN0 H0Y714 30 37 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 3 0.0073307 52.716 1 0.98487 1.0675 NaN 1 Median 0.98487 1.0675 NaN 1 0 Median NaN NaN NaN 0 0 Median 25575000 12880000 12695000 25575000 12880000 12695000 0 0 0 8109 1286 8294 21436 33631 33631 1 LIPVHQVR THSKVLYVYDMLAGKLIPVHQVRGLKEKIV YDMLAGKLIPVHQVRGLKEKIVRSFEVSPD K L I V R G 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 2 0 0 8 0 960.58688 B2RAX6;Q9Y5J1;J3KSR7 B2RAX6 306 313 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2;3 0.0023719 81.784 2 4 1.2997 1.0865 6.6929 6 Median 0.90401 1.0395 2.5731 2 0 Median 1.3566 1.1362 5.7842 4 0 Median 400330000 198550000 201790000 314530000 163240000 151290000 85805000 35304000 50502000 8110 876 8295 21437;21438;21439;21440;21441;21442 33632;33633;33634;33635;33636;33637;33638;33639;33640;33641 33633 10 LIQDQQEQIQHLK HKLDTVSSKIELNRKLIQDQQEQIQHLKST RKLIQDQQEQIQHLKSTTNELKSEKLQIST K L I L K S 0 0 0 1 0 5 1 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1619.8631 Q92878 Q92878 852 864 RAD50 DNA repair protein RAD50 yes yes 3 0.0047545 37.869 2 1 0.64529 0.56485 35.57 2 Median 0.7361 0.72639 NaN 1 0 Median 0.56569 0.43924 NaN 1 0 Median 35340000 24237000 11104000 31893000 22096000 9797700 3447000 2141200 1305800 8111 1953 8296 21443;21444;21445 33642;33643;33644 33643 3 LIQEIVDK VPRNLVGKVIGKNGKLIQEIVDKSGVVRVR VIGKNGKLIQEIVDKSGVVRVRIEAENEKN K L I D K S 0 0 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 956.55425 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;R9WPL0;A0A087WXI3 X5DQX7 303 310 FMR1 Fragile X mental retardation protein 1 yes no 2 0.022631 57.047 1 1.2912 1.3934 NaN 1 Median 1.2912 1.3934 NaN 1 0 Median NaN NaN NaN 0 0 Median 41871000 14998000 26873000 41871000 14998000 26873000 0 0 0 8112 1689 8297 21446 33645 33645 1 LIQEQHPEEELIK AHEERVNEVNQFAAKLIQEQHPEEELIKTK AKLIQEQHPEEELIKTKQDEVNAAWQRLKG K L I I K T 0 0 0 0 0 2 4 0 1 2 2 1 0 0 1 0 0 0 0 0 0 0 13 0 1604.841 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 215 227 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.032904 32.734 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4084600 0 4084600 0 0 0 4084600 0 4084600 8113 523 8298 21447;21448 33646;33647 33646 2 LIQIAAR RWDVLIQQATQCLNRLIQIAARKKRNYILD QATQCLNRLIQIAARKKRNYILDQTNVYGS R L I A R K 2 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 783.49667 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0 M0R3F1 340 346 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 0.026743 77.748 1 0.73147 0.75238 NaN 1 Median 0.73147 0.75238 NaN 1 0 Median NaN NaN NaN 0 0 Median 21280000 12772000 8508800 21280000 12772000 8508800 0 0 0 8114 49 8299 21449 33648;33649 33648 2 LIQPGTFTK NACQWSKDQVNLSPKLIQPGTFTKTKEDIL VNLSPKLIQPGTFTKTKEDILESKSEQTKS K L I T K T 0 0 0 0 0 1 0 1 0 1 1 1 0 1 1 0 2 0 0 0 0 0 9 0 1003.5702 B5BUA4;Q5FBB7 B5BUA4 259 267 SGOL1 Shugoshin-like 1 yes no 2 0.010363 59.35 2 2 1.3744 1.2002 17.796 4 Median 1.0161 1.0403 4.2062 2 0 Median 1.7667 1.4031 6.0836 2 0 Median 49870000 25791000 24079000 43676000 23353000 20323000 6193800 2438300 3755500 8115 1075 8300 21450;21451;21452;21453 33650;33651;33652;33653;33654 33653 5 LIQQQLEK IACNKQDIAMAKSAKLIQQQLEKELNTLRV AMAKSAKLIQQQLEKELNTLRVTRSAAPST K L I E K E 0 0 0 0 0 3 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 998.57605 Q549N5;Q9Y5M8;H7C4H2 Q549N5 192 199 SRPRB Signal recognition particle receptor subunit beta yes no 2 0.012587 67.277 2 1.2059 1.253 NaN 1 Median 1.2059 1.253 NaN 1 0 Median NaN NaN NaN 0 0 Median 27237000 8546200 18690000 27237000 8546200 18690000 0 0 0 8116 1794 8301 21454;21455 33655;33656 33656 2 LIQSHPESAEDLQEK ALGDKVNSLGETAERLIQSHPESAEDLQEK LIQSHPESAEDLQEKCTELNQAWSSLGKRA R L I E K C 1 0 0 1 0 2 3 0 1 1 2 1 0 0 1 2 0 0 0 0 0 0 15 0 1722.8424 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1279 1293 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 2.197E-10 109.84 3 2 3.0176 2.3542 NaN 1 Median NaN NaN NaN 0 0 Median 3.0176 2.3542 NaN 1 0 Median 38777000 859090 37918000 32977000 0 32977000 5799700 859090 4940600 8117 523 8302 21456;21457;21458;21459;21460 33657;33658;33659;33660;33661 33659 5 LISEILSESVVPDVR SMKHTATARFQRNHRLISEILSESVVPDVR LISEILSESVVPDVRSVVTTARMQVLKRQV R L I V R S 0 1 0 1 0 0 2 0 0 2 2 0 0 0 1 3 0 0 0 3 0 0 15 0 1654.9142 B4DGM3;A0A024R1S7;Q969G3;K7EMQ8;J3QKS7 B4DGM3 184 198 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 4.2362E-16 136.96 2 2 1.0369 0.86704 5.848 3 Median 0.7599 0.83105 NaN 1 0 Median 1.0786 0.89937 5.1762 2 0 Median 61942000 42642000 19300000 52171000 37885000 14286000 9771200 4757500 5013600 8118 86 8303 21461;21462;21463;21464 33662;33663;33664;33665;33666;33667;33668;33669 33665 8 LISGEEHFSSK KCKISSYCRSQPPARLISGEEHFSSKKCLA PPARLISGEEHFSSKKCLAWFYEYAGPDEV R L I S K K 0 0 0 0 0 0 2 1 1 1 1 1 0 1 0 3 0 0 0 0 0 0 11 0 1232.6037 E9PQV9;A0A024R3A2;Q9BTE7;H0YCN4 E9PQV9 39 49 DCUN1D5 DCN1-like protein;DCN1-like protein 5 yes no 2 0.0015777 66.435 1 2.4589 2.5386 NaN 1 Median 2.4589 2.5386 NaN 1 0 Median NaN NaN NaN 0 0 Median 11469000 3682400 7786600 11469000 3682400 7786600 0 0 0 8119 132 8304 21465 33670 33670 1 LISIWSR RLGSESQYSPTPLLKLISIWSRNARYFPLL YSPTPLLKLISIWSRNARYFPLLAKQKPGH K L I S R N 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 1 0 0 0 0 7 0 873.50724 O75691 O75691 1205 1211 UTP20 Small subunit processome component 20 homolog yes yes 2 0.010624 110.63 2 1.0288 1.0463 3.6868 2 Median 1.0288 1.0463 3.6868 2 0 Median NaN NaN NaN 0 0 Median 44854000 23269000 21584000 44854000 23269000 21584000 0 0 0 8120 1412 8305 21466;21467 33671;33672 33672 2 LISLFQAMK AERAVTGYKDPYSGKLISLFQAMKKGLILK DPYSGKLISLFQAMKKGLILKDHGIRLLEA K L I M K K 1 0 0 0 0 1 0 0 0 1 2 1 1 1 0 1 0 0 0 0 0 0 9 0 1049.5943 Q15149;D3DWL0;Q96IE3 Q15149 4159 4167 PLEC;PLEC1 Plectin yes no 2 0.00016776 101.28 2 3.1903 3.5499 0.3747 2 Median 3.1903 3.5499 0.3747 2 0 Median NaN NaN NaN 0 0 Median 111610000 29342000 82267000 111610000 29342000 82267000 0 0 0 8121 1754 8306 21468;21469 33673;33674;33675 33675 1614 3 LISLPLSR MADVVVGKDKGGEQRLISLPLSRIRVIMKS DKGGEQRLISLPLSRIRVIMKSSPEVSSIN R L I S R I 0 1 0 0 0 0 0 0 0 1 3 0 0 0 1 2 0 0 0 0 0 0 8 0 897.56475 E5RGS9;Q9NRG0 E5RGS9 16 23 CHRAC1 Chromatin accessibility complex protein 1 yes no 2 0.0055897 83.206 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8122 1212 8307 21470;21471 33676;33677 33677 2 LISPLASPADGVK TEKESAWSPPPIEIRLISPLASPADGVKSK IRLISPLASPADGVKSKPRKTTEVTGTGLG R L I V K S 2 0 0 1 0 0 0 1 0 1 2 1 0 0 2 2 0 0 0 1 0 0 13 0 1266.7184 Q8WYP5 Q8WYP5 2220 2232 AHCTF1 Protein ELYS yes yes 2 0.001556 57.348 2 2 1.3538 1.2224 14.924 4 Median 1.3329 1.4079 7.9343 2 0 Median 1.3693 1.1024 2.5774 2 0 Median 81844000 32001000 49843000 68141000 26859000 41282000 13704000 5142200 8561400 8123 1945 8308 21472;21473;21474;21475 33678;33679;33680;33681;33682 33679 5 LISQIVSSITASLR RNLDIERPTYTNLNRLISQIVSSITASLRF RLISQIVSSITASLRFDGALNVDLTEFQTN R L I L R F 1 1 0 0 0 1 0 0 0 3 2 0 0 0 0 4 1 0 0 1 0 0 14 0 1486.8719 B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;F8VVB9;C9JDS9;Q9H853;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;P68366 B3KT06 195 208 TUBA1B;TUBA4A;TUBA4B;TUBA1C Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain;Tubulin alpha-4A chain no no 2 2.1949E-46 176.78 18 2 1.4348 1.662 25.694 10 Median 1.4573 1.6784 9.3216 8 0 Median 1.0449 0.90768 3.6582 2 0 Median 5237500000 2196800000 3040600000 5009700000 2085000000 2924600000 227820000 111800000 116010000 8124 922;1257;1659 8309 21476;21477;21478;21479;21480;21481;21482;21483;21484;21485;21486;21487;21488;21489;21490;21491;21492;21493;21494;21495 33683;33684;33685;33686;33687;33688;33689;33690;33691;33692;33693;33694;33695;33696;33697;33698;33699;33700;33701;33702;33703;33704;33705;33706;33707;33708;33709;33710;33711;33712;33713;33714 33685 31 LISWYDNEFGYSNR FDAGAGIALNDHFVKLISWYDNEFGYSNRV KLISWYDNEFGYSNRVVDLMAHMASKE___ K L I N R V 0 1 2 1 0 0 1 1 0 1 1 0 0 1 0 2 0 1 2 0 0 0 14 0 1762.7951 V9HVZ4;P04406;Q2TSD0;E7EUT5 V9HVZ4 310 323 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 3.8827E-06 97.214 2 2 1.6976 1.3896 8.3838 2 Median NaN NaN NaN 0 0 Median 1.6976 1.3896 8.3838 2 0 Median 113420000 9161400 104260000 88296000 0 88296000 25128000 9161400 15966000 8125 1442 8310 21496;21497;21498;21499 33715;33716;33717;33718;33719;33720;33721 33717 7 LITAADTTAEQR ARKKEREKRSQDLQKLITAADTTAEQRRTE LQKLITAADTTAEQRRTERKAPKKKLPQKK K L I Q R R 3 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 3 0 0 0 0 0 12 0 1288.6623 B4DQG8;Q9NPF5;Q5TG40 B4DQG8 261 272 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 4.5742E-05 95.483 1 1 0.61835 0.5261 NaN 1 Median NaN NaN NaN 0 0 Median 0.61835 0.5261 NaN 1 0 Median 13584000 11784000 1800300 8991200 8991200 0 4593200 2792800 1800300 8126 1024 8311 21500;21501 33722;33723;33724 33722 3 LITDLQDQNQK KQISSLRDEVEAKAKLITDLQDQNQKMMLE AKAKLITDLQDQNQKMMLEQERLRVEHEKL K L I Q K M 0 0 1 2 0 3 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1314.6779 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;B4DS27 V9HW29 729 739 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.00017173 80.688 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8127 1186 8312 21502;21503 33725;33726 33726 2 LITEDVQGK LADLQNDEVAFRKFKLITEDVQGKNCLTNF AFRKFKLITEDVQGKNCLTNFHGMDLTRDK K L I G K N 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1001.5393 Q6NXR8;A8K4W0;P61247;D6RG13;B7Z3M5;H0Y8L7;E9PFI5;D6RAT0;D6RB09;D6RAS7;D6RED7;D6RGE0 Q6NXR8 86 94 RPS3A 40S ribosomal protein S3a yes no 2 0.0015501 95.531 2 2 0.89427 0.8852 23.781 4 Median 0.93987 1.1008 6.2022 2 0 Median 0.87881 0.73295 2.0738 2 0 Median 737250000 374530000 362710000 646320000 325850000 320470000 90929000 48683000 42247000 8128 742 8313 21504;21505;21506;21507 33727;33728;33729;33730;33731;33732;33733;33734;33735;33736;33737 33728 11 LITGASDSELR RTEVWGLVLLSEEKRLITGASDSELRVWDI EEKRLITGASDSELRVWDIAYLQEIEDPEE R L I L R V 1 1 0 1 0 0 1 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1160.6037 Q5TDG3;Q9UNX4 Q5TDG3 206 216 WDR3 WD repeat-containing protein 3 yes no 2 1.2643E-05 107.79 2 2 1.0438 1.0013 1.5507 4 Median 0.88321 0.99412 0.29255 2 0 Median 1.2467 1.0167 1.4398 2 0 Median 201150000 111000000 90152000 178170000 101210000 76954000 22986000 9789000 13197000 8129 1827 8314 21508;21509;21510;21511 33738;33739;33740;33741;33742;33743;33744;33745 33739 8 LITGLGVGR RGRPKGSEMKYALKRLITGLGVGRETARPC KYALKRLITGLGVGRETARPCYSLALAQLL R L I G R E 0 1 0 0 0 0 0 3 0 1 2 0 0 0 0 0 1 0 0 1 0 0 9 0 884.54435 Q9BQG0;B4DZZ1;B4DWP5 Q9BQG0 77 85 MYBBP1A Myb-binding protein 1A yes no 2 0.0060191 65.252 1 2 1.1397 0.99998 3.7124 3 Median 0.91583 0.99998 NaN 1 0 Median 1.1703 0.98848 5.1645 2 0 Median 36975000 19276000 17699000 30023000 16118000 13906000 6951600 3158400 3793200 8130 1997 8315 21512;21513;21514 33746;33747;33748;33749;33750 33746 5 LITNSEEIAFYNGNK TEQKYEGEYRYVNSRLITNSEEIAFYNGNK LITNSEEIAFYNGNKREKQTVHSVFRKLVE R L I N K R 1 0 3 0 0 0 2 1 0 2 1 1 0 1 0 1 1 0 1 0 0 0 15 0 1711.8417 B4DL07;P28288;B4DZ22 B4DL07 296 310 ABCD3 ATP-binding cassette sub-family D member 3 yes no 2 0.00044827 80.979 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8131 994 8316 21515 33751 33751 1 LITNTAEAVLQK RSRYSGVNQSMLFDKLITNTAEAVLQKMDD FDKLITNTAEAVLQKMDDMKKMRRQRMREL K L I Q K M 2 0 1 0 0 1 1 0 0 1 2 1 0 0 0 0 2 0 0 1 0 0 12 0 1299.7398 A0A024R9G7;Q6PL18 A0A024R9G7 176 187 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 0.00083818 75.294 1 1 1.452 1.1648 NaN 1 Median NaN NaN NaN 0 0 Median 1.452 1.1648 NaN 1 0 Median 1955500 1002100 953320 0 0 0 1955500 1002100 953320 8132 278 8317 21516;21517 33752;33753 33752 2 LITPAVVSER KATYDKLCKEVPNYKLITPAVVSERLKIRG VPNYKLITPAVVSERLKIRGSLARAALQEL K L I E R L 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 10 0 1083.6288 P62851 P62851 67 76 RPS25 40S ribosomal protein S25 yes yes 2 8.46E-05 98.033 3 2 1.1926 0.84535 54.621 4 Linear 1.1615 1.3643 2.4425 2 0 Median 0.6154 0.52988 0.81423 2 0 Median 1121100000 594490000 526580000 1060900000 558240000 502680000 60148000 36245000 23903000 8133 1649 8318 21518;21519;21520;21521;21522 33754;33755;33756;33757;33758;33759;33760;33761;33762;33763 33759 10 LIVDEAINEDNSVVSLSQPK DLSTAILKQKNRPNRLIVDEAINEDNSVVS AINEDNSVVSLSQPKMDELQLFRGDTVLLK R L I P K M 1 0 2 2 0 1 2 0 0 2 2 1 0 0 1 3 0 0 0 3 0 0 20 0 2169.1165 V9HW80;P55072 V9HW80 26 45 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 2 1.3851E-06 74.769 2 1.1347 1.1395 NaN 1 Median 1.1347 1.1395 NaN 1 0 Median NaN NaN NaN 0 0 Median 20846000 6758000 14088000 20846000 6758000 14088000 0 0 0 8134 1613 8319 21523;21524 33764;33765;33766;33767 33767 4 LIVDHNIADYMTAK MYEKIDLTLLNRLLRLIVDHNIADYMTAKN RLIVDHNIADYMTAKNNVVINYKDMNHTNS R L I A K N 2 0 1 2 0 0 0 0 1 2 1 1 1 0 0 0 1 0 1 1 0 0 14 0 1602.8076 Q6P2Q9;I3L0J9 Q6P2Q9 999 1012 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 6.0361E-05 63.894 1 1.505 1.6293 NaN 1 Median 1.505 1.6293 NaN 1 0 Median NaN NaN NaN 0 0 Median 22060000 9447500 12612000 22060000 9447500 12612000 0 0 0 8135 1854 8320 21525 33768 33768 1714 1 LIVENLSSR SGRDKYGPPVRTEYRLIVENLSSRCSWQDL VRTEYRLIVENLSSRCSWQDLKDFMRQAGE R L I S R C 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 9 0 1029.5819 A8K644;Q08170;A0A0D9SEM4;Q53F45;Q59EF5;B4DEM8;V9HVZ0;A8K588;Q13247;Q59GY3;A0A024R6D8;Q59EK7;Q13243;B4DJK0;B4DUA4 V9HVZ0 112 120 SFRS4;SRSF4;HEL-S-91;SRSF6;SFRS5;SRSF5 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 5 no no 2 0.00018844 106.91 2 2 1.0833 1.2738 51.288 3 Plateau 1.0731 1.254 7.0999 2 0 Median 0.63356 0.51802 NaN 1 0 Median 540430000 247420000 293020000 521540000 239390000 282150000 18898000 8029300 10869000 8136 748;755;202 8321 21526;21527;21528;21529 33769;33770;33771;33772;33773;33774;33775;33776;33777;33778 33773 10 LIVNIAK IEETLSTLRYANQARLIVNIAKVNEDMNAK LRYANQARLIVNIAKVNEDMNAKLIRELKA R L I A K V 1 0 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 7 0 769.50617 Q15058 Q15058 700 706 KIF14 Kinesin-like protein KIF14 yes yes 2 0.040059 59.641 1 2.0081 2.0319 NaN 1 Median 2.0081 2.0319 NaN 1 0 Median NaN NaN NaN 0 0 Median 5696200 1925400 3770800 5696200 1925400 3770800 0 0 0 8137 1751 8322 21530 33779 33779 1 LIVNVNDLR YQSKVRELISDNQYRLIVNVNDLRRKNEKR SDNQYRLIVNVNDLRRKNEKRANRLLNNAF R L I L R R 0 1 2 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1054.6135 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492 Q53HJ4 47 55 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 2.5787E-05 113.26 2 1.3231 1.4714 2.8452 2 Median 1.3231 1.4714 2.8452 2 0 Median NaN NaN NaN 0 0 Median 159710000 74128000 85577000 159710000 74128000 85577000 0 0 0 8138 568 8323 21531;21532 33780;33781;33782;33783 33780 4 LIVVLEGASLETVK KRPRLGAGNKIGGRRLIVVLEGASLETVKV RLIVVLEGASLETVKVGKTYELLNCDKHKS R L I V K V 1 0 0 0 0 0 2 1 0 1 3 1 0 0 0 1 1 0 0 3 0 0 14 0 1469.8705 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65 A8K6D2 43 56 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 3.6418E-06 101.93 2 2 1.6813 1.5042 12.341 4 Median 1.5608 1.6624 7.0356 2 0 Median 1.6869 1.371 6.0071 2 0 Median 93711000 33897000 59814000 75995000 27050000 48946000 17716000 6846800 10869000 8139 759 8324 21533;21534;21535;21536 33784;33785;33786;33787 33785 4 LIYFQLHR ALESDNNTALLLSKKLIYFQLHRALKMIVD ALLLSKKLIYFQLHRALKMIVDPVEPHGEM K L I H R A 0 1 0 0 0 1 0 0 1 1 2 0 0 1 0 0 0 0 1 0 0 0 8 0 1088.6131 B2R8R5;Q13263 B2R8R5 367 374 TRIM28 Transcription intermediary factor 1-beta yes no 2;3 0.0031964 60.972 3 1.4908 1.5886 5.4453 2 Median 1.4908 1.5886 5.4453 2 0 Median NaN NaN NaN 0 0 Median 60149000 22577000 37572000 60149000 22577000 37572000 0 0 0 8140 862 8325 21537;21538;21539 33788;33789;33790;33791;33792 33791 5 LKGDDLQAIK FNSKSGQRGSSKSGKLKGDDLQAIKKELTQ SKSGKLKGDDLQAIKKELTQIKQKVDSLLE K L K I K K 1 0 0 2 0 1 0 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1099.6237 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;D3DPI2;G3V5V7;B4DQQ2;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V2D6 G3V4W0 175 184 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 2 1.6905E-05 110.38 2 1.149 1.3459 0.51186 2 Median 1.149 1.3459 0.51186 2 0 Median NaN NaN NaN 0 0 Median 297480000 135370000 162100000 297480000 135370000 162100000 0 0 0 8141 837;781 8326 21540;21541 33793;33794;33795 33793 3 LKGDDLQAIKK FNSKSGQRGSSKSGKLKGDDLQAIKKELTQ KSGKLKGDDLQAIKKELTQIKQKVDSLLEN K L K K K E 1 0 0 2 0 1 0 1 0 1 2 3 0 0 0 0 0 0 0 0 0 0 11 2 1227.7187 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V5V7;B4DQQ2;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V2D6 G3V4W0 175 185 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 no no 3 0.014948 34.185 1 0.62063 0.58126 NaN 1 Median NaN NaN NaN 0 0 Median 0.62063 0.58126 NaN 1 0 Median 11384000 6719100 4664700 0 0 0 11384000 6719100 4664700 8142 837;781 8327 21542 33796 33796 1 LKPESSQQPGQDALAVK NTEQMREAFATAFSKLKPESSQQPGQDALA PESSQQPGQDALAVKAGHGYDSKKQQELTA K L K V K A 2 0 0 1 0 3 1 1 0 0 2 2 0 0 2 2 0 0 0 1 0 0 17 1 1794.9476 A0A024RBU4;O96006;C9JXP4 A0A024RBU4 97 113 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 3 0.0043136 32.191 2 0.81871 0.70763 12.481 2 Median NaN NaN NaN 0 0 Median 0.81871 0.70763 12.481 2 0 Median 7154300 4106200 3048200 0 0 0 7154300 4106200 3048200 8143 347 8328 21543;21544 33797;33798;33799 33797 3 LKPQYLEELPGQLK RTQLIRLCYSSDHEKLKPQYLEELPGQLKQ KLKPQYLEELPGQLKQFSMFLGKFSWFAGE K L K L K Q 0 0 0 0 0 2 2 1 0 0 4 2 0 0 2 0 0 0 1 0 0 0 14 1 1654.9294 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3;B4E2J2 Q6FGJ9 127 140 GSTM3 Glutathione S-transferase Mu 3 yes no 3 0.023255 25.376 1 3.0784 3.6376 NaN 1 Median 3.0784 3.6376 NaN 1 0 Median NaN NaN NaN 0 0 Median 32657000 9852600 22805000 32657000 9852600 22805000 0 0 0 8144 1503 8329 21545 33800 33800 1 LKPTDVGLLAVIANNIITINK GRTEEALQLYNQIIKLKPTDVGLLAVIANN GLLAVIANNIITINKDQNVFDSKKKVKLTN K L K N K D 2 0 3 1 0 0 0 1 0 4 3 2 0 0 1 0 2 0 0 2 0 0 21 1 2219.3253 V9HWK0;O76094;Q86X80;A0PJJ5;Q0D2M6;Q71V07;D6RDY6 V9HWK0 255 275 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 3 0.017322 34.067 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8145 1416 8330 21546;21547 33801;33802 33801 2 LKPWGLFEVLVEK KEFFTKKGDLKHITKLKPWGLFEVLVEKYE TKLKPWGLFEVLVEKYEWSQEEAAGFTDFL K L K E K Y 0 0 0 0 0 0 2 1 0 0 3 2 0 1 1 0 0 1 0 2 0 0 13 1 1556.8967 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9 Q96SB4 603 615 SRPK1 SRSF protein kinase 1 yes no 3 0.016533 23.934 1 1.4535 1.6101 NaN 1 Median 1.4535 1.6101 NaN 1 0 Median NaN NaN NaN 0 0 Median 5135800 1638300 3497600 5135800 1638300 3497600 0 0 0 8146 1988 8331 21548 33803;33804 33803 2 LLAAALK RIRKEKPQQHNFTHRLLAAALKSHSGNISC QQHNFTHRLLAAALKSHSGNISCMDFSSNG R L L L K S 3 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 698.46906 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;A0A0S2Z5C1;F8WDI9;F8WCR3 E9PF19 45 51 TBL2 Transducin beta-like protein 2 yes no 2 0.044333 61.123 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6988700 6988700 0 6988700 6988700 0 0 0 0 8147 582 8332 21549 33805 33805 1 LLAAFEER KYSTWEPEENILDARLLAAFEEREREMELY ENILDARLLAAFEEREREMELYGPKKRGPK R L L E R E 2 1 0 0 0 0 2 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 947.50763 Q9HC52;C9J6K3;C9JM54 Q9HC52 53 60 CBX8 Chromobox protein homolog 8 yes no 2 0.0085059 85.064 2 2 1.0802 1.0116 11.06 4 Median 0.89672 0.91633 3.9852 2 0 Median 1.2947 1.1036 2.3052 2 0 Median 37692000 19347000 18345000 30282000 16021000 14261000 7409200 3325700 4083500 8148 2052 8333 21550;21551;21552;21553 33806;33807;33808;33809;33810 33808 5 LLACIASR AKISSLLEEQFQQGKLLACIASRPGQCGRA EQFQQGKLLACIASRPGQCGRADGYVLEGK K L L S R P 2 1 0 0 1 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 8 0 902.50077 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 171 178 RPS8 40S ribosomal protein S8 yes no 2 0.0027401 98.997 1 2 0.84476 0.8156 5.325 3 Plateau 0.69602 0.8156 NaN 1 0 Median 0.8588 0.74514 1.5131 2 0 Median 873700000 490380000 383320000 724310000 410590000 313710000 149400000 79790000 69609000 8149 1635 8334 21554;21555;21556 33811;33812;33813;33814;33815;33816 33811 6 LLACIASRPGQCGR AKISSLLEEQFQQGKLLACIASRPGQCGRA KLLACIASRPGQCGRADGYVLEGKELEFYL K L L G R A 2 2 0 0 2 1 0 2 0 1 2 0 0 0 1 1 0 0 0 0 0 0 14 1 1557.7868 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 171 184 RPS8 40S ribosomal protein S8 yes no 3 0.00016856 66.004 2 2 0.87415 0.81431 10.519 3 Median 0.74806 0.81431 NaN 1 0 Median 0.89661 0.78027 14.461 2 0 Median 234510000 150950000 83565000 117490000 88321000 29164000 117030000 62627000 54401000 8150 1635 8335 21557;21558;21559;21560 33817;33818;33819;33820;33821;33822 33820 6 LLADPTGAFGK TGEWGRAHKAEGKVRLLADPTGAFGKETDL GKVRLLADPTGAFGKETDLLLDDSLVSIFG R L L G K E 2 0 0 1 0 0 0 2 0 0 2 1 0 1 1 0 1 0 0 0 0 0 11 0 1088.5866 V9HW35;P30044 V9HW35 97 107 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 2 0.038372 47.706 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5327400 0 5327400 5327400 0 5327400 0 0 0 8151 1529 8336 21561 33823 33823 1 LLADQAEAR MEHIHKLKADKARKKLLADQAEARRSKTKE DKARKKLLADQAEARRSKTKEARKRREERL K L L A R R 3 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 985.51926 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8 J3QR09 151 159 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 1.1998E-11 153.78 2 2 0.8214 0.82246 4.0985 4 Median 0.72357 0.85314 2.1259 2 0 Median 0.91748 0.79812 1.1951 2 0 Median 1664100000 940870000 723240000 1379500000 790720000 588820000 284580000 150150000 134430000 8152 1331 8337 21562;21563;21564;21565 33824;33825;33826;33827;33828;33829;33830;33831;33832 33827 9 LLAEGHPDPDAELQR DRKREKEELEEIRQRLLAEGHPDPDAELQR LLAEGHPDPDAELQRMEQEAERRRQPQIKQ R L L Q R M 2 1 0 2 0 1 2 1 1 0 3 0 0 0 2 0 0 0 0 0 0 0 15 0 1659.8216 P49756 P49756 550 564 RBM25 RNA-binding protein 25 yes yes 3 6.7893E-05 59.864 2 1 1.0893 1.1942 33.779 3 Plateau 1.0893 1.1996 0.63014 2 0 Median 0.76878 0.66828 NaN 1 0 Median 96074000 50767000 45307000 94156000 49721000 44435000 1918300 1046400 871910 8153 1587 8338 21566;21567;21568 33833;33834;33835;33836;33837;33838 33837 6 LLAEILR KIQEENVIPREKTLRLLAEILREGNQEVPF IPREKTLRLLAEILREGNQEVPFDVPELWY R L L L R E 1 1 0 0 0 0 1 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 7 0 826.52764 E5KNY5;P42704;B4DSR0 E5KNY5 995 1001 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.018704 95.793 1 2.3493 2.5106 NaN 1 Median 2.3493 2.5106 NaN 1 0 Median NaN NaN NaN 0 0 Median 44825000 13084000 31742000 44825000 13084000 31742000 0 0 0 8154 1207 8339 21569 33839 33839 1 LLAIQAK DTEAEDMISAVKSRRLLAIQAKKEREIQER ISAVKSRRLLAIQAKKEREIQEREMKVKLE R L L A K K 2 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 755.49052 Q9UIG0 Q9UIG0 847 853 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.026863 91.093 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 163920000 0 163920000 163920000 0 163920000 0 0 0 8155 2103 8340 21570;21571 33840;33841 33840 2 LLAIVR NDFFLLAELLSDYIRLLAIVRAAFDQRMKT AELLSDYIRLLAIVRAAFDQRMKTWQRWQD R L L V R A 1 1 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 6 0 683.4694 H0YK42;Q59GU6;Q53HL9;Q53GY8;Q13596 H0YK42 184 189 SNX1 Sorting nexin-1 yes no 2 0.0048216 141.66 2 1.2449 1.3823 7.8858 2 Median 1.2449 1.3823 7.8858 2 0 Median NaN NaN NaN 0 0 Median 110170000 49146000 61027000 110170000 49146000 61027000 0 0 0 8156 1294 8341 21572;21573 33842;33843 33842 2 LLALNSLYSPK FWSHETRLPSNTLDRLLALNSLYSPKIEVH TLDRLLALNSLYSPKIEVHFLSLATNFLLE R L L P K I 1 0 1 0 0 0 0 0 0 0 4 1 0 0 1 2 0 0 1 0 0 0 11 0 1217.702 P78527 P78527 2539 2549 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.7847E-08 120.99 2 2 0.6719 0.7767 57.999 4 Linear 0.63908 0.72086 3.2898 2 0 Median 0.33075 0.26445 5.0093 2 0 Median 179700000 110800000 68899000 140480000 81799000 58682000 39218000 29001000 10217000 8157 1665 8342 21574;21575;21576;21577 33844;33845;33846;33847;33848 33845 5 LLALQR VTEKEGDYVPPEKLKLLALQRGEDPGNLNE DYVPPEKLKLLALQRGEDPGNLNESEEEEE K L L Q R G 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 712.45956 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;Q6ZUE0;H7C267;Q674R7 B5MCF9 425 430 PES1;ATG9B Pescadillo homolog;Autophagy-related protein 9B yes no 2 0.037498 123.07 2 0.88363 1.0089 7.9905 2 Median 0.88363 1.0089 7.9905 2 0 Median NaN NaN NaN 0 0 Median 265600000 137520000 128080000 265600000 137520000 128080000 0 0 0 8158 886 8343 21578;21579 33849;33850 33849 2 LLANQQVFHISCFR ETCVECQKTVYPMERLLANQQVFHISCFRC RLLANQQVFHISCFRCSYCNNKLSLGTYAS R L L F R C 1 1 1 0 1 2 0 0 1 1 2 0 0 2 0 1 0 0 0 1 0 0 14 0 1731.8879 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 242 255 LIMA1 LIM domain and actin-binding protein 1 yes no 3 1.7503E-05 92.039 3 1 2.1056 2.3773 12.846 2 Median 2.1056 2.3773 12.846 2 0 Median NaN NaN NaN 0 0 Median 141560000 44613000 96944000 130780000 44613000 86169000 10775000 0 10775000 8159 1010 8344 21580;21581;21582;21583 33851;33852;33853;33854;33855;33856;33857;33858 33851 8 LLAPDCEIIQEVGK QDGLLFKVTLGLIRKLLAPDCEIIQEVGKL KLLAPDCEIIQEVGKLYPLEIVFGMNGRIW K L L G K L 1 0 0 1 1 1 2 1 0 2 2 1 0 0 1 0 0 0 0 1 0 0 14 0 1583.8229 Q9NQT5 Q9NQT5 210 223 EXOSC3 Exosome complex component RRP40 yes yes 2 4.1068E-06 100.55 2 2 0.96796 0.82475 7.9162 4 Median 0.88183 0.88295 8.5688 2 0 Median 0.99463 0.79817 3.5595 2 0 Median 54652000 30427000 24225000 36136000 20377000 15759000 18516000 10050000 8465900 8160 2061 8345 21584;21585;21586;21587 33859;33860;33861;33862;33863;33864;33865;33866;33867 33860 9 LLASANLEEVTMK KKPPTDEELKETIKKLLASANLEEVTMKQI KKLLASANLEEVTMKQICKKVYENYPTYDL K L L M K Q 2 0 1 0 0 0 2 0 0 0 3 1 1 0 0 1 1 0 0 1 0 0 13 0 1417.7487 B4DNW3;H0Y993;P35659;B4DFG0 P35659 332 344 DEK Protein DEK no no 2 1.1627E-13 127.7 3 4 0.87845 0.83076 37.92 6 Median 0.93419 1.0906 14.251 3 0 Plateau 0.57688 0.47557 31.09 3 0 Median 591110000 315940000 275170000 506000000 260880000 245120000 85103000 55054000 30049000 8161 1546;1018 8346;8347 21588;21589;21590;21591;21592;21593;21594 33868;33869;33870;33871;33872;33873;33874;33875;33876;33877;33878 33869 805 11 LLASDLQR EIFLTVPVGGGESLRLLASDLQRHSIAQLD GGGESLRLLASDLQRHSIAQLDPEALGNIK R L L Q R H 1 1 0 1 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 8 0 914.51853 Q53HL2;A8K7A2 Q53HL2 241 248 CDCA8 Borealin yes no 2 0.0021178 102.71 2 2 1.2836 1.2371 5.2175 4 Median 1.0561 1.2289 8.8426 2 0 Median 1.4564 1.2371 1.7414 2 0 Median 507090000 253140000 253960000 459980000 234290000 225690000 47111000 18843000 28268000 8162 1789 8348 21595;21596;21597;21598 33879;33880;33881;33882;33883;33884 33882 6 LLASFFDR CHVSAGTRHKVLLRRLLASFFDRNTLANSC HKVLLRRLLASFFDRNTLANSCGTGIRSST R L L D R N 1 1 0 1 0 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 8 0 967.51272 A0A024R7E0;Q96RE7 A0A024R7E0 402 409 BTBD14B;NACC1 Nucleus accumbens-associated protein 1 yes no 2 0.03446 60.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8163 221 8349 21599 33885 33885 1 LLASINSTVR EVKGAVYSMVEFNGKLLASINSTVRLYEWT EFNGKLLASINSTVRLYEWTTEKELRTECN K L L V R L 1 1 1 0 0 0 0 0 0 1 2 0 0 0 0 2 1 0 0 1 0 0 10 0 1072.6241 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 880 889 DDB1 DNA damage-binding protein 1 yes no 2 1.1107E-22 172.21 2 2 0.93204 0.93159 11.978 4 Median 0.73094 0.8389 0.71535 2 0 Median 1.2006 1.0322 0.3905 2 0 Median 379190000 216860000 162330000 313240000 186040000 127210000 65947000 30823000 35124000 8164 1770 8350 21600;21601;21602;21603 33886;33887;33888;33889;33890;33891;33892;33893;33894 33889 9 LLASLVK HQYQFLEDAVRNQRKLLASLVKRLGDKHAT DAVRNQRKLLASLVKRLGDKHATLQKSTKE K L L V K R 1 0 0 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 7 0 742.49528 B2R8R5;Q13263;M0R3C0 B2R8R5 255 261 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.026944 83.377 2 1.4691 1.5264 11.074 2 Median 1.4691 1.5264 11.074 2 0 Median NaN NaN NaN 0 0 Median 37875000 13200000 24675000 37875000 13200000 24675000 0 0 0 8165 862 8351 21604;21605 33895;33896;33897 33897 3 LLASPSSR RSRVFDLQFSTDSPRLLASPSSRSIDISAT FSTDSPRLLASPSSRSIDISATIPKFTNTQ R L L S R S 1 1 0 0 0 0 0 0 0 0 2 0 0 0 1 3 0 0 0 0 0 0 8 0 829.46577 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470;C9JZP1 A8K4T8 84 91 NCAPH Condensin complex subunit 2 yes no 2 0.0044591 93.561 2 2 1.2821 1.2627 18.338 4 Median 0.96115 1.0578 7.7744 2 0 Median 1.7019 1.4389 1.2021 2 0 Median 105110000 49229000 55878000 92059000 44261000 47798000 13048000 4967600 8080300 8166 740 8352 21606;21607;21608;21609 33898;33899;33900;33901;33902;33903;33904;33905 33900 8 LLASQGSQGAPLLSTPK SMDPAMLERLLSLDRLLASQGSQGAPLLST ASQGSQGAPLLSTPKRERMVLMKTVEEKDL R L L P K R 2 0 0 0 0 2 0 2 0 0 4 1 0 0 2 3 1 0 0 0 0 0 17 0 1666.9254 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 449 465 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 1.7614E-25 146.79 2 2 1.2051 1.1342 15.308 4 Median 0.89453 0.99229 0.4718 2 0 Median 1.6079 1.2935 0.15582 2 0 Median 161850000 76679000 85176000 119600000 60430000 59167000 42258000 16249000 26009000 8167 1745 8353 21610;21611;21612;21613 33906;33907;33908;33909;33910;33911;33912;33913 33907 8 LLASSPALPSSGAQAR LSDSPLLGPPVGEPRLLASSPALPSSGAQA LASSPALPSSGAQARLTRAPGPPHSAHALP R L L A R L 4 1 0 0 0 1 0 1 0 0 3 0 0 0 2 4 0 0 0 0 0 0 16 0 1524.826 A0A024R4V8;B4DZT6;Q9NYZ3 A0A024R4V8 30 45 GTSE1 G2 and S phase-expressed protein 1 yes no 2 0.00015265 66.262 1 0.81265 0.80805 NaN 1 Median 0.81265 0.80805 NaN 1 0 Median NaN NaN NaN 0 0 Median 8377100 4206700 4170500 8377100 4206700 4170500 0 0 0 8168 163 8354 21614 33914;33915;33916 33915 3 LLASTLVHSVK PLDDSNRPASLTKDRLLASTLVHSVKKEQE TKDRLLASTLVHSVKKEQEFRSIFDHIKLP R L L V K K 1 0 0 0 0 0 0 0 1 0 3 1 0 0 0 2 1 0 0 2 0 0 11 0 1166.7023 Q9NYF8;Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 570 580 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.00094401 60.49 3 0.99976 1.0413 7.7862 2 Median 0.99976 1.0413 7.7862 2 0 Median NaN NaN NaN 0 0 Median 69935000 39026000 30909000 69935000 39026000 30909000 0 0 0 8169 2083 8355 21615;21616;21617 33917;33918;33919;33920;33921 33920 5 LLATASFTK TDEMTHKETNEQEERLLATASFTKSSRSSR NEQEERLLATASFTKSSRSSRTRSSKAILL R L L T K S 2 0 0 0 0 0 0 0 0 0 2 1 0 1 0 1 2 0 0 0 0 0 9 0 950.54368 Q8WYP5;B3KRD0;H7C4S1 Q8WYP5 2084 2092 AHCTF1 Protein ELYS yes no 2 0.0019814 78.334 1 2 1.8731 1.4641 12.49 3 Median 1.1499 1.2453 NaN 1 0 Median 1.9071 1.5267 5.9272 2 0 Median 64323000 25661000 38663000 43630000 18459000 25171000 20693000 7202000 13492000 8170 1945 8356 21618;21619;21620 33922;33923;33924;33925;33926;33927 33924 6 LLATGSQDR HDKDINSVAIAPNDKLLATGSQDRTAKLWA IAPNDKLLATGSQDRTAKLWALPQCQLLGV K L L D R T 1 1 0 1 0 1 0 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 9 0 959.50361 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 493 501 TBL3 Transducin beta-like protein 3 no no 2 0.00028235 103.56 1 1 1.0146 0.97991 2.0672 2 Median 0.89901 0.99434 NaN 1 0 Median 1.1451 0.96569 NaN 1 0 Median 64037000 31818000 32219000 59314000 29757000 29557000 4723300 2061500 2661900 8171 1698;436 8357 21621;21622 33928;33929;33930 33928 3 LLATLR SDDCLVKIWATDDGRLLATLRGHAAEISDM KIWATDDGRLLATLRGHAAEISDMAVNYEN R L L L R G 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 6 0 685.44866 Q8WWQ0;Q6RI45 Q8WWQ0 217 222 PHIP;BRWD3 PH-interacting protein;Bromodomain and WD repeat-containing protein 3 no no 2 0.031538 128 2 0.85167 0.96038 8.1904 2 Median 0.85167 0.96038 8.1904 2 0 Median NaN NaN NaN 0 0 Median 166650000 90491000 76154000 166650000 90491000 76154000 0 0 0 8172 1942;1860 8358 21623;21624 33931;33932 33931 2 LLAVSLLDCTVK LDEDVLCVSYSPNQKLLAVSLLDCTVKIFY NQKLLAVSLLDCTVKIFYVDTLKFFLSLYG K L L V K I 1 0 0 1 1 0 0 0 0 0 4 1 0 0 0 1 1 0 0 2 0 0 12 0 1330.753 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 563 574 WDR3 WD repeat-containing protein 3 yes no 2 0.00021532 85.958 2 2 1.1426 1.0196 12.322 4 Median 0.88011 0.92091 6.1759 2 0 Median 1.4206 1.1218 5.2778 2 0 Median 74359000 36868000 37491000 38264000 20866000 17399000 36095000 16002000 20093000 8173 1827 8359 21625;21626;21627;21628 33933;33934;33935;33936;33937;33938 33937 6 LLDAESEDRPK EMEFRSAQIADLQQKLLDAESEDRPKQRWE LQQKLLDAESEDRPKQRWENIATILEAKCA K L L P K Q 1 1 0 2 0 0 2 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 11 1 1271.6357 Q59HG1;O95239;B4DYE2;B3KNC0;Q2VIQ3 Q59HG1 844 854 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2;3 7.6153E-16 150.85 4 4 1.1329 1.1332 9.3336 8 Median 0.86167 1.0287 6.4541 4 0 Median 1.4123 1.2093 3.0925 4 0 Median 646550000 336610000 309940000 577170000 308250000 268920000 69373000 28352000 41021000 8174 1803 8360 21629;21630;21631;21632;21633;21634;21635;21636 33939;33940;33941;33942;33943;33944;33945;33946;33947;33948;33949;33950;33951;33952;33953 33945 15 LLDAPGIVPGPNSEVGTILR ITKFMQEVYLDKFIRLLDAPGIVPGPNSEV GIVPGPNSEVGTILRNCVHVQKLADPVTPV R L L L R N 1 1 1 1 0 0 1 3 0 2 3 0 0 0 3 1 1 0 0 2 0 0 20 0 2017.1208 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 301 320 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.0026869 32.734 1 1 0.85331 0.80387 32.881 2 Median 0.97713 1.0143 NaN 1 0 Median 0.74518 0.6371 NaN 1 0 Median 22370000 11457000 10913000 13622000 6842900 6778600 8748600 4614100 4134500 8175 291 8361 21637;21638 33954;33955;33956 33955 2 LLDAQLATGGIVDPR QAMKKELIPTEEALRLLDAQLATGGIVDPR LLDAQLATGGIVDPRLGFHLPLEVAYQRGY R L L P R L 2 1 0 2 0 1 0 2 0 1 3 0 0 0 1 0 1 0 0 1 0 0 15 0 1537.8464 Q15149;D3DWL0;Q96IE3 Q15149 3936 3950 PLEC;PLEC1 Plectin yes no 2 3.6838E-15 129.37 2 1 1.5619 1.7869 4.0463 2 Median 1.5619 1.7869 4.0463 2 0 Median NaN NaN NaN 0 0 Median 174880000 60556000 114320000 163650000 60556000 103090000 11234000 0 11234000 8176 1754 8362 21639;21640;21641 33957;33958;33959;33960;33961;33962 33959 6 LLDAQLSTGGIVDPSK QALKKGLIPREQGLRLLDAQLSTGGIVDPS LDAQLSTGGIVDPSKSHRVPLDVACARGCL R L L S K S 1 0 0 2 0 1 0 2 0 1 3 1 0 0 1 2 1 0 0 1 0 0 16 0 1612.8672 Q15149;D3DWL0 Q15149 3270 3285 PLEC;PLEC1 Plectin yes no 2 9.5761E-34 155.66 2 2 2.0943 2.0446 8.6693 4 Median 1.8921 2.1324 1.7162 2 0 Median 2.3689 1.8778 7.805 2 0 Median 163380000 54597000 108790000 135970000 46617000 89357000 27409000 7980200 19429000 8177 1754 8363 21642;21643;21644;21645 33963;33964;33965;33966;33967;33968;33969 33964 7 LLDAVDTYIPVPAR LEGRDPELGLKSVQKLLDAVDTYIPVPARD KLLDAVDTYIPVPARDLEKPFLLPVEAVYS K L L A R D 2 1 0 2 0 0 0 0 0 1 2 0 0 0 2 0 1 0 1 2 0 0 14 0 1541.8453 P49411 P49411 239 252 TUFM Elongation factor Tu, mitochondrial yes yes 2 1.297E-69 201.84 2 2 1.4213 1.3949 35.339 4 Median 1.6541 1.8654 0.17456 2 0 Median 1.2215 1.013 4.3109 2 0 Median 207130000 79753000 127370000 174160000 64850000 109310000 32962000 14904000 18059000 8178 1580 8364 21646;21647;21648;21649 33970;33971;33972;33973;33974;33975;33976;33977 33973 8 LLDDFGVNIEGVR LLAKICLENCAEIMRLLDDFGVNIEGVREK MRLLDDFGVNIEGVREKLDTFLLDNFVPLM R L L V R E 0 1 1 2 0 0 1 2 0 1 2 0 0 1 0 0 0 0 0 2 0 0 13 0 1445.7514 V9HWF1;Q96M94 V9HWF1 139 151 HEL-S-305;KLHL15 Kelch-like protein 15 yes no 2 0.005018 59.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1089800 0 1089800 0 0 0 1089800 0 1089800 8179 1978 8365 21650 33978 33978 1 LLDDLFR KSEKKEKAQEEPPAKLLDDLFRKTKAAPCI AQEEPPAKLLDDLFRKTKAAPCIYWLPLTD K L L F R K 0 1 0 2 0 0 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 7 0 890.48617 G3V3B0;Q69YJ6;S4R3H4;E7EQT4;Q9UKV3 G3V3B0 451 457 ACIN1;DKFZp667N107 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.027742 73.039 1 1.0188 1.0558 NaN 1 Median 1.0188 1.0558 NaN 1 0 Median NaN NaN NaN 0 0 Median 22912000 11587000 11325000 22912000 11587000 11325000 0 0 0 8180 1220 8366 21651 33979 33979 1 LLDEDEIR LCCYLKRESVELALKLLDEDEIRGYKLHVE SVELALKLLDEDEIRGYKLHVEVAKFQLKG K L L I R G 0 1 0 2 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1001.5029 O43719;B4DRS4;Q5H919;Q5H918 O43719 200 207 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.052162 53.968 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8181 1388 8367 21652 33980 33980 1 LLDEEEATDNDLR ELLQRNREILDESLRLLDEEEATDNDLRAK LRLLDEEEATDNDLRAKFKERWQRTPSNEL R L L L R A 1 1 1 3 0 0 3 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 13 0 1531.7002 B7Z5C1;B4DHD2;Q4W4Y1;Q8WUM4 B7Z5C1 238 250 DRIP4;PDCD6IP Programmed cell death 6-interacting protein yes no 2 0.004941 58.676 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8182 974 8368 21653;21654 33981;33982 33981 2 LLDESESAASSR KKYNLHPGVTDYMDRLLDESESAASSRAPS MDRLLDESESAASSRAPSPPPTASNSSNSQ R L L S R A 2 1 0 1 0 0 2 0 0 0 2 0 0 0 0 4 0 0 0 0 0 0 12 0 1263.5943 Q8N108 Q8N108 363 374 MIER1 Mesoderm induction early response protein 1 yes yes 2 4.0771E-08 106.62 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22969000 0 22969000 17222000 0 17222000 5746800 0 5746800 8183 1903 8369 21655;21656 33983;33984 33983 2 LLDEVFFSEK NDGVLLAAERRNIHKLLDEVFFSEKIYKLN RNIHKLLDEVFFSEKIYKLNEDMACSVAGI K L L E K I 0 0 0 1 0 0 2 0 0 0 2 1 0 2 0 1 0 0 0 1 0 0 10 0 1225.6231 H0YLS6;H0YLC2;H0YKT8;H0YMI6;H0YMA1;H0YMZ1;H0YN18;H0YL69;P25789 H0YLS6 55 64 PSMA4 Proteasome subunit alpha type;Proteasome subunit beta type;Proteasome subunit alpha type-4 yes no 2 0.0031538 77.677 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3165000 0 3165000 3165000 0 3165000 0 0 0 8184 1295 8370 21657 33985 33985 1 LLDHMQNTPGFMYK KLGNGINIIVATPGRLLDHMQNTPGFMYKN RLLDHMQNTPGFMYKNLQCLVIDEADRILD R L L Y K N 0 0 1 1 0 1 0 1 1 0 2 1 2 1 1 0 1 0 1 0 0 0 14 0 1693.7956 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254 Q4ZG72 188 201 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.0036427 45.829 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9149000 0 9149000 9149000 0 9149000 0 0 0 8185 303 8371 21658 33986 33986 222;223 1 LLDLDIPMSVGIIDTR HQQLEGWKWNRPGDRLLDLDIPMSVGIIDT LDLDIPMSVGIIDTRTNPSQLNAVEFLWDP R L L T R T 0 1 0 3 0 0 0 1 0 3 3 0 1 0 1 1 1 0 0 1 0 0 16 0 1769.9597 A8KAN5;A0A024R2L0;Q9NZI7;A0A024R2J0 A8KAN5 146 161 UBP1 Upstream-binding protein 1 yes no 2 9.3028E-05 60.255 2 0.98232 1.0577 NaN 1 Median 0.98232 1.0577 NaN 1 0 Median NaN NaN NaN 0 0 Median 3142700 1381300 1761400 3142700 1381300 1761400 0 0 0 8186 115 8372 21659;21660 33987;33988 33987 99 2 LLDLELTSR VDGEKYQKGTRVRLRLLDLELTSRFLGATT TRVRLRLLDLELTSRFLGATTDTTVLEANA R L L S R F 0 1 0 1 0 0 1 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 9 0 1058.5972 A0A0S2Z5D2;Q53G62;A0A0S2Z563;A0A0S2Z5H0;Q9Y2Q9;E5RGC7;H0YAT2;E5RK86;E5RFH3 A0A0S2Z5D2 138 146 MRPS28 28S ribosomal protein S28, mitochondrial yes no 2 0.014558 59.245 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8187 576 8373 21661 33989 33989 1 LLDLVQQSCNYK NPKAYPLADAHLTKKLLDLVQQSCNYKQLR TKKLLDLVQQSCNYKQLRKGANEATKTLNR K L L Y K Q 0 0 1 1 1 2 0 0 0 0 3 1 0 0 0 1 0 0 1 1 0 0 12 0 1479.7392 Q6FHM6;B1AHD1;P55769 Q6FHM6 22 33 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2 2.3662E-29 168.83 2 4 0.71306 0.7493 13.836 6 Median 0.65907 0.76215 1.0312 2 0 Median 0.89203 0.66543 15.363 4 0 Linear 606700000 355970000 250740000 457070000 276150000 180920000 149630000 79814000 69820000 8188 812 8374 21662;21663;21664;21665;21666;21667 33990;33991;33992;33993;33994;33995;33996;33997;33998;33999 33993 10 LLDLVVQPVPR FFGTPISKASQKISRLLDLVVQPVPRPSQC KISRLLDLVVQPVPRPSQCSEFIQQSSMKS R L L P R P 0 1 0 1 0 1 0 0 0 0 3 0 0 0 2 0 0 0 0 3 0 0 11 0 1247.7602 Q8WYP5;B3KVE5 Q8WYP5 1117 1127 AHCTF1 Protein ELYS yes no 2 4.4581E-10 130.96 2 2 1.7938 1.7254 17.938 4 Median 1.3573 1.469 2.9142 2 0 Median 2.3756 2.0011 1.1265 2 0 Median 125990000 50756000 75235000 85388000 39032000 46356000 40603000 11724000 28880000 8189 1945 8375 21668;21669;21670;21671 34000;34001;34002;34003;34004;34005;34006;34007 34000 8 LLDNLLALIR GNPIFRNPCTEQILKLLDNLLALIRTHNTL EQILKLLDNLLALIRTHNTLYAPEMLAKMA K L L I R T 1 1 1 1 0 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0 0 10 0 1152.723 A8K5Y7;Q9HAV4;B3KPQ5;Q9H8N6;B3KNC6 A8K5Y7 772 781 XPO5 Exportin-5 yes no 2 1.1583E-29 157.68 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7377800 0 7377800 7377800 0 7377800 0 0 0 8190 754 8376 21672;21673 34008;34009 34009 2 LLDPANR AAAPRRPFSWEDVDRLLDPANRAHLGLEEQ FSWEDVDRLLDPANRAHLGLEEQLRELLDM R L L N R A 1 1 1 1 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 797.43955 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41;B7Z926;Q59G93;Q9Y4Q3;B4DZC2 A0A024R4W4 703 709 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.047335 59.641 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12505000 12505000 0 12505000 12505000 0 0 0 0 8191 162 8377 21674 34010 34010 1 LLDPEDVDVPQPDEK DQAFSVAERDLGVTRLLDPEDVDVPQPDEK LLDPEDVDVPQPDEKSIITYVSSLYDAMPR R L L E K S 0 0 0 4 0 1 2 0 0 0 2 1 0 0 3 0 0 0 0 2 0 0 15 0 1707.8203 Q15149;E9PMV1 Q15149 372 386 PLEC Plectin yes no 2 4.905E-07 102.66 2 1.5001 1.5081 9.4051 2 Median 1.5001 1.5081 9.4051 2 0 Median NaN NaN NaN 0 0 Median 50162000 22889000 27274000 50162000 22889000 27274000 0 0 0 8192 1754 8378 21675;21676 34011;34012;34013;34014;34015 34011 5 LLDPTSSR VDALGYVSLFPLLLRLLDPTSSRLGPLLDI LFPLLLRLLDPTSSRLGPLLDILADSRHLW R L L S R L 0 1 0 1 0 0 0 0 0 0 2 0 0 0 1 2 1 0 0 0 0 0 8 0 887.47125 Q58F09;Q13724;A8K9K4 Q58F09 701 708 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.036793 48.561 1 0.34697 0.34583 NaN 1 Median 0.34697 0.34583 NaN 1 0 Median NaN NaN NaN 0 0 Median 16563000 11119000 5444800 16563000 11119000 5444800 0 0 0 8193 1720 8379 21677 34016 34016 1 LLDSITVPVAR MQPAQHGEIIKHMAKLLDSITVPVARASIL HMAKLLDSITVPVARASILWLIGENCERVP K L L A R A 1 1 0 1 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 2 0 0 11 0 1182.6972 B4E0B2;Q3MNE1;A0A0S2Z4Z4;A8K586;A0A0S2Z5J4;O00203 B4E0B2 390 400 AP3B1 AP-3 complex subunit beta;AP-3 complex subunit beta-1 yes no 2 0.00036777 91.087 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5694500 0 5694500 5694500 0 5694500 0 0 0 8194 572 8380 21678;21679 34017;34018;34019 34017 3 LLDSVPPTAISHFK SATEIIKASSKDAIRLLDSVPPTAISHFKQ RLLDSVPPTAISHFKQSAEKLIEEKGAVEA R L L F K Q 1 0 0 1 0 0 0 0 1 1 2 1 0 1 2 2 1 0 0 1 0 0 14 0 1523.8348 Q9NR30 Q9NR30 582 595 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 7.133E-05 62.035 3 4 1.1993 1.1486 12.321 6 Median 1.1275 1.2758 2.156 2 0 Median 1.2842 1.0435 9.8885 4 0 Median 358370000 154740000 203640000 291260000 125750000 165510000 67114000 28989000 38126000 8195 2065 8381 21680;21681;21682;21683;21684;21685;21686 34020;34021;34022;34023;34024;34025;34026;34027;34028;34029;34030;34031;34032 34025 13 LLDTAFDLDVFK PATGNKKTHLTELQRLLDTAFDLDVFKNFS LQRLLDTAFDLDVFKNFS____________ R L L F K N 1 0 0 3 0 0 0 0 0 0 3 1 0 2 0 0 1 0 0 1 0 0 12 0 1395.7286 B4DF00;E9PDF2;E9PCR7;Q02218;B4DZ95;B4E3E9;E9PFG7;B4DK55 B4DF00 960 971 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.00087443 74.841 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8196 968 8382 21687 34033 34033 1 LLDTIGISQPQWR PEAIDSAENRFKFSRLLDTIGISQPQWREL SRLLDTIGISQPQWRELSDLESARQFCQTV R L L W R E 0 1 0 1 0 2 0 1 0 2 2 0 0 0 1 1 1 1 0 0 0 0 13 0 1525.8253 Q53SY7;F8VPD4;P27708 Q53SY7 980 992 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00062445 82.261 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8197 1259 8383 21688 34034 34034 1 LLDTNPEINQSDSQDSR LFYVTAFDRDRAMQRLLDTNPEINQSDSQD DTNPEINQSDSQDSRVAPRLDRKKRTVNRE R L L S R V 0 1 2 3 0 2 1 0 0 1 2 0 0 0 1 3 1 0 0 0 0 0 17 0 1930.8868 Q14669 Q14669 1565 1581 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.0018677 55.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3799000 0 3799000 3799000 0 3799000 0 0 0 8198 1736 8384 21689 34035 34035 1 LLDVDNR SYMLPPLFLEPGDLRLLDVDNRVVLPIEAP FLEPGDLRLLDVDNRVVLPIEAPIRMMITS R L L N R V 0 1 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 843.44503 A0A0E3JSF1;A0A0E3JG40;D3WYY8;Q14XT3;X2D546;X2D544;X2D537;X2D4V5;X2D4V3;X2D4U5;X2D4U2;X2D4K6;X2D4F2;X2D4E2;X2D4D6;X2D3Z8;X2D3Z7;X2D3Z6;K7WG81;H9E7F7;A0A059QM31;H9E7P8;A0A059RTG7;A0A059QNV4;E2DTL8;A0A1B1PEQ8;H9E7W2;G3CA49;K7WVJ5;H9E7T7;X5C6M5;X5BKA4;X2CK15;X2C841;W8DFH5;W8DBX9;W8D4U9;W8D1X2;V9K571;V9JPM6;V9JD22;V9J3S1;U5Z9R9;U5Z487;U3LSI8;U3L556;T1SWS8;T1Q632;S4STI1;R9Y478;R9Y412;Q9B2U8;Q9B138;Q8WCW3;Q8HNR6;Q8HNR1;Q85KS0;Q7YEH2;Q7YCE6;Q7Y6N0;Q7Y6M3;Q7Y626;Q6VJJ3;Q6VJD8;Q6VIG7;Q6RQ80;Q6RNN7;Q6RKW8;Q6R0V6;Q5XRW8;Q5SB08;Q5SAP1;Q5SA98;Q5S971;Q4GW12;Q4GVP5;Q4GQP0;Q4GHE1;Q4GCZ4;Q4GCG2;Q4GCC3;Q4F4V6;Q4EZD4;Q305H0;Q19MP7;Q15HH9;Q0Z7S0;Q0Z7K3;Q0Z7J0;Q0Z7F1;Q0Z7D8;Q09U41;Q06TE6;N0BMC4;L7XQ86;L7XMG0;L7NVC9;K9M370;K7X9X2;J7HPF9;J7FG21;I6UIH6;I6PZI4;I6PRP7;I6N6Q6;I3Q4M2;I3PYD8;I2E7Z7;H9T3W9;H9SA70;H9S868;H9S5Y2;H9S054;H9RV93;H9RKS9;H9RJL3;H9RF01;H9RD12;H9RAX1;H9RA87;H9QLC8;H9QH59;H9Q9T5;H9PWQ9;H9PMX8;H9PDV6;H9MK30;H9M675;H9LMC2;H9E7D1;G9LKX8;G9LHJ5;G9LG51;G9LB98;G8JF18;G8JE99;G5D8Q5;G5D8N2;G5D8K6;G5D8J3;G5D8C8;G5D863;G4W3U1;G4W3M6;F2WJ84;F2WI31;F2WGV2;F1CIN6;F1AZF2;F1AZ87;E9P659;E7E4E0;E7CNQ9;E7CM18;E5FWC0;E5EWR3;E5EWL4;E5EWG2;E5E1V1;E5E1A6;E5E079;E5DZN4;E2JFC4;E0AF97;D2IKF4;D1G421;C8YBL1;C8Y3Q5;C8Y3G4;C8XWJ6;C5H6M8;C5H6M7;C5H6M5;C5H6M4;C5H6M3;C5H6L3;C5H6K7;C5H6K6;C5H6K5;B5M7M0;B3GUF3;B3DE06;B2XP28;B2XL43;B2XIR3;B2XHT9;B2WRY8;B2CB37;B1W855;A7LFA2;A7LF11;A6ZHA9;A6ZFK3;A6ZF47;A6ZEU4;A6Z3M5;A1Z455;A0SA07;A0S3T1;A0S2P1;A0A1S6N0P5;A0A1S6M799;A0A1L7NY43;A0A1L1ZJP0;A0A1J0QNY7;A0A1J0QL53;A0A1J0PNZ2;A0A1I9S095;A0A1B1PEN9;A0A1B0W3A7;A0A1B0W1P0;A0A1B0W0T5;A0A1B0VYS2;A0A143G082;A0A143FZ56;A0A0R6NEC0;A0A0P0C1B5;A0A0N6YNR7;A0A0D4WSL8;A0A0D4WR75;A0A0D4WQL7;A0A0D3MLN1;A0A0B5E697;A0A097Q0T5;A0A097PWY7;A0A097PWR7;A0A068IXK4;A0A068BY99;A0A059SAH5;A0A059S8A4;A0A059S2S6;A0A059S242;A0A059RZV1;A0A059RX67;A0A059RVU8;A0A059RUP9;A0A059RTZ6;A0A059RSL1;A0A059RRR2;A0A059RRG1;A0A059RR09;A0A059RQT0;A0A059RQQ2;A0A059RQI1;A0A059RQ10;A0A059RPV8;A0A059RP05;A0A059RNV8;A0A059RNF8;A0A059RMK0;A0A059RLH3;A0A059RKX5;A0A059RKP1;A0A059RJF0;A0A059RIZ2;A0A059RIQ8;A0A059RI85;A0A059RI53;A0A059RHY7;A0A059RHR2;A0A059RFY4;A0A059R1T0;A0A059QVH0;A0A059QTW9;A0A059QS59;A0A059QQA7;A0A059QPY9;A0A059QPU3;A0A059QPT6;A0A059QPR4;A0A059QPE9;A0A059QPE7;A0A059QLX8;A0A059QI72;A0A023QZ25;A0A1B0W1E4;A0A059RUZ1;H9STE0;P00403;X2D4T8;A0A1B0W2I6;H9E7B8;H9E779;A0A1B1PEM6;V5N5I3;S4UQ76;Q9B1F9;Q8HQB7;Q4F6A2;Q4EYL1;L7YNE0;H9T056;H9SYF8;H9RJM6;G9LAZ4;G9C8L9;E9LAG1;E2JJS5;D7NUN3;D5M8T1;D4IH20;D3YPT7;D2K1G3;C9D661;C7BWV1;B4F438;B2XPS3;B2XHF9;B0Z6W4;A7LDC6;A6Z6E8;A6YXV0;A4ZKZ0;A1Z4V2;A0S0W7;A0A1L1ZCG1;A0A1B0WUR8;A0A141ZQJ3;A0A141ZQA2;A0A0E3D6T2;A0A097QC07;A0A097PYA5;A0A097PX98;A0A068BTX8;A0A068BST3;A0A068BP29;A0A059RMS5;A0A023QRX9;A0A023QCZ2 A0A0E3JSF1 135 141 cox2;COX2;COII;MT-CO2 Cytochrome c oxidase subunit 2 yes no 2 0.03421 62.717 1 1.1141 1.2339 NaN 1 Median 1.1141 1.2339 NaN 1 0 Median NaN NaN NaN 0 0 Median 63113000 29687000 33425000 63113000 29687000 33425000 0 0 0 8199 530 8385 21690 34036 34036 1 LLDVIHTENK EISLLKELNHPNIVKLLDVIHTENKLYLVF PNIVKLLDVIHTENKLYLVFEFLHQDLKKF K L L N K L 0 0 1 1 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1180.6452 A0A024RB10;A0A024RB77;G3V5T9;P24941 A0A024RB10 66 75 CDK2 Cyclin-dependent kinase 2 yes no 2 1.2939E-05 95.502 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8200 318 8386 21691 34037 34037 1 LLDVLSGHEGPISGLCFNPMK QDSFEIFVWSMQTGRLLDVLSGHEGPISGL GHEGPISGLCFNPMKSVLASASWDKTVRLW R L L M K S 0 0 1 1 1 0 1 3 1 1 4 1 1 1 2 2 0 0 0 1 0 0 21 0 2283.1392 Q15269;A0A0B4J2E5;Q59FM2 Q15269 493 513 PWP2 Periodic tryptophan protein 2 homolog yes no 3 3.6565E-08 63.488 3 1.0295 0.82326 4.6434 2 Median NaN NaN NaN 0 0 Median 1.0295 0.82326 4.6434 2 0 Median 18853000 9046400 9806100 0 0 0 18853000 9046400 9806100 8201 1756 8387;8388 21692;21693;21694 34038;34039;34040;34041 34039 1625 4 LLDYTEK KNKPGEIAKYMETVKLLDYTEKPLYENLRD AKYMETVKLLDYTEKPLYENLRDILLQGLK K L L E K P 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 880.4542 A8K245;Q99986;H0YJ50;H0YJJ9 A8K245 308 314 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.042314 58.604 1 1.5446 1.526 NaN 1 Median 1.5446 1.526 NaN 1 0 Median NaN NaN NaN 0 0 Median 25558000 10855000 14703000 25558000 10855000 14703000 0 0 0 8202 707 8389 21695 34042 34042 1 LLDYVPIGPR YKSQLSCVVVDDIERLLDYVPIGPRFSNLV DDIERLLDYVPIGPRFSNLVLQALLVLLKK R L L P R F 0 1 0 1 0 0 0 1 0 1 2 0 0 0 2 0 0 0 1 1 0 0 10 0 1141.6495 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;Q96D47;D3DXJ4;I3L2G1;K7EQD6 I3L0N3 603 612 NSF Vesicle-fusing ATPase yes no 2 0.007051 57.96 2 1.5042 1.5226 16.322 2 Median 1.5042 1.5226 16.322 2 0 Median NaN NaN NaN 0 0 Median 28136000 14523000 13613000 28136000 14523000 13613000 0 0 0 8203 1096 8390 21696;21697 34043;34044 34043 2 LLEAAAQSTK DALDRSMVEEGTGLRLLEAAAQSTKGYYSP GTGLRLLEAAAQSTKGYYSPYSVSGSGSTA R L L T K G 3 0 0 0 0 1 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1030.5659 Q15149;D3DWL0;Q96IE3 Q15149 4600 4609 PLEC;PLEC1 Plectin yes no 2 0.00082113 80.688 2 1 1.7694 1.9405 4.3742 3 Median 1.723 1.9003 5.9459 2 0 Median 2.4829 1.9405 NaN 1 0 Median 131850000 46862000 84993000 128160000 45762000 82401000 3691000 1099200 2591800 8204 1754 8391 21698;21699;21700 34045;34046;34047;34048 34046 4 LLEAASVSSK DAINRSMVEDITGLRLLEAASVSSKGLPSP ITGLRLLEAASVSSKGLPSPYNMSSAPGSR R L L S K G 2 0 0 0 0 0 1 0 0 0 2 1 0 0 0 3 0 0 0 1 0 0 10 0 1003.555 P15924;Q4LE79;B4E2A0;Q6ZP16 P15924 2802 2811 DSP;DSP variant protein Desmoplakin yes no 2 0.0029784 66.621 2 1.0447 1.0567 NaN 1 Median 1.0447 1.0567 NaN 1 0 Median NaN NaN NaN 0 0 Median 16437000 7508600 8928000 16437000 7508600 8928000 0 0 0 8205 1486 8392 21701;21702 34049;34050 34050 2 LLEAISSLDGK SEDEGDNDGERKHQKLLEAISSLDGKNRRK KHQKLLEAISSLDGKNRRKLAERSEASLKV K L L G K N 1 0 0 1 0 0 1 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1144.634 Q9BVJ6;O60531 Q9BVJ6 46 56 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 7.9364E-08 112.75 2 1 1.0509 1.1749 6.655 3 Median 1.0434 1.1509 2.9183 2 0 Median 1.599 1.2842 NaN 1 0 Median 168100000 77363000 90740000 152990000 72231000 80755000 15117000 5132100 9985300 8206 2008 8393 21703;21704;21705 34051;34052;34053;34054;34055;34056 34051 6 LLEAQACTGGIIDPSTGER EAMHRNLVDNITGQRLLEAQACTGGIIDPS QACTGGIIDPSTGERFPVTDAVNKGLVDKI R L L E R F 2 1 0 1 1 1 2 3 0 2 2 0 0 0 1 1 2 0 0 0 0 0 19 0 1986.9681 Q15149;D3DWL0;Q96IE3 Q15149 4448 4466 PLEC;PLEC1 Plectin yes no 2 2.4399E-08 95.264 2 1 1.5903 1.5989 2.0493 3 Plateau 1.588 1.5958 1.5477 2 0 Median 1.7517 1.5487 NaN 1 0 Median 38370000 14346000 24025000 34493000 12676000 21818000 3877400 1670100 2207300 8207 1754 8394 21706;21707;21708 34057;34058;34059;34060;34061;34062;34063;34064 34057 8 LLEAQACTGGIIDPSTGERFPVTDAVNK EAMHRNLVDNITGQRLLEAQACTGGIIDPS PSTGERFPVTDAVNKGLVDKIMVDRINLAQ R L L N K G 3 1 1 2 1 1 2 3 0 2 2 1 0 1 2 1 3 0 0 2 0 0 28 1 2958.4757 Q15149;D3DWL0;Q96IE3 Q15149 4448 4475 PLEC;PLEC1 Plectin yes no 3 4.7689E-16 69.152 2 2 2.1808 2.1121 6.2789 4 Median 2.002 2.2125 5.074 2 0 Median 2.3771 2.0289 4.1844 2 0 Median 51084000 16094000 34989000 28921000 10619000 18302000 22163000 5475800 16687000 8208 1754 8395 21709;21710;21711;21712 34065;34066;34067;34068;34069;34070;34071;34072 34072 8 LLEAQACTGGIIHPTTGQK EGIERGIVDSITGQRLLEAQACTGGIIHPT QACTGGIIHPTTGQKLSLQDAVSQGVIDQD R L L Q K L 2 0 0 0 1 2 1 3 1 2 2 1 0 0 1 0 3 0 0 0 0 0 19 0 1994.0255 P15924;Q4LE79 P15924 2650 2668 DSP;DSP variant protein Desmoplakin yes no 3 6.4614E-06 67.274 1 1 0.97854 0.80351 NaN 1 Median NaN NaN NaN 0 0 Median 0.97854 0.80351 NaN 1 0 Median 7970200 7042400 927770 6114000 6114000 0 1856200 928400 927770 8209 1486 8396 21713;21714 34073;34074;34075 34073 3 LLEAQIASGGVVDPVNSVFLPK EAIKKNLIDRETGMRLLEAQIASGGVVDPV SGGVVDPVNSVFLPKDVALARGLIDRDLYR R L L P K D 2 0 1 1 0 1 1 2 0 1 3 1 0 1 2 2 0 0 0 4 0 0 22 0 2252.2416 P15924;Q4LE79 P15924 2124 2145 DSP;DSP variant protein Desmoplakin yes no 2 4.1407E-11 88.507 1 0.6853 0.69563 NaN 1 Median 0.6853 0.69563 NaN 1 0 Median NaN NaN NaN 0 0 Median 12815000 7599600 5215900 12815000 7599600 5215900 0 0 0 8210 1486 8397 21715 34076 34076 1 LLEAQIATGGIIDPEESHR QAMKKGLILKDHGIRLLEAQIATGGIIDPE QIATGGIIDPEESHRLPVEVAYKRGLFDEE R L L H R L 2 1 0 1 0 1 3 2 1 3 2 0 0 0 1 1 1 0 0 0 0 0 19 0 2048.0538 Q15149;D3DWL0;Q96IE3 Q15149 4179 4197 PLEC;PLEC1 Plectin yes no 2;3 1.0127E-09 99.413 4 1 2.1517 2.4401 1.6733 3 Median 2.1416 2.4218 2.2857 2 0 Median 2.8399 2.4401 NaN 1 0 Median 139830000 42780000 97047000 133400000 41266000 92130000 6430000 1513600 4916400 8211 1754 8398 21716;21717;21718;21719;21720 34077;34078;34079;34080;34081;34082;34083 34080 7 LLEAQIATGGIIDPK QAMNKELIEKGHGIRLLEAQIATGGIIDPK LLEAQIATGGIIDPKESHRLPVDIAYKRGY R L L P K E 2 0 0 1 0 1 1 2 0 3 2 1 0 0 1 0 1 0 0 0 0 0 15 0 1537.8716 P15924;Q4LE79 P15924 2367 2381 DSP;DSP variant protein Desmoplakin yes no 2 4.9077E-05 85.522 2 0.56012 0.5598 29.723 2 Median 0.56012 0.5598 29.723 2 0 Median NaN NaN NaN 0 0 Median 23665000 14941000 8723700 23665000 14941000 8723700 0 0 0 8212 1486 8399 21721;21722 34084;34085 34085 2 LLEAQIATGGVIDPVHSHR QAMQKGLIVREHGIRLLEAQIATGGVIDPV QIATGGVIDPVHSHRVPVDVAYRRGYFDEE R L L H R V 2 1 0 1 0 1 1 2 2 2 2 0 0 0 1 1 1 0 0 2 0 0 19 0 2012.0803 A0A075B730;A0A087X1U6;P58107;Q15149;D3DWL0 Q15149 2942 2960 EPPK1;PLEC;PLEC1 Epiplakin;Plectin no no 4 0.0033456 35.044 1 1.8065 1.9994 NaN 1 Median 1.8065 1.9994 NaN 1 0 Median NaN NaN NaN 0 0 Median 61104000 25733000 35370000 61104000 25733000 35370000 0 0 0 8213 1754;397;1622 8400 21723 34086 34086 1 LLEAQVASGFLVDPLNNQR QAVRDGLLPTGLGQRLLEAQVASGFLVDPL QVASGFLVDPLNNQRLSVEDAVKVGLVGRE R L L Q R L 2 1 2 1 0 2 1 1 0 0 4 0 0 1 1 1 0 0 0 2 0 0 19 0 2083.1062 A0A075B730;A0A087X1U6;P58107 A0A075B730 1254 1272 EPPK1 Epiplakin no no 2 2.1241E-06 105.14 2 1.5507 1.5646 9.8413 2 Median 1.5507 1.5646 9.8413 2 0 Median NaN NaN NaN 0 0 Median 26567000 11210000 15357000 26567000 11210000 15357000 0 0 0 8214 397;1622 8401 21724;21725 34087;34088;34089;34090 34090 4 LLEDLMDELLEAR LSAVSSVLLSLPAARLLEDLMDELLEARSW ARLLEDLMDELLEARSWLADVAEKDPDEDC R L L A R S 1 1 0 2 0 0 3 0 0 0 5 0 1 0 0 0 0 0 0 0 0 0 13 0 1558.7913 B3KMG2;Q9Y4R8 B3KMG2 309 321 TELO2 Telomere length regulation protein TEL2 homolog yes no 3 0.019834 20.953 1 1.3306 1.3705 NaN 1 Median 1.3306 1.3705 NaN 1 0 Median NaN NaN NaN 0 0 Median 21379000 10133000 11246000 21379000 10133000 11246000 0 0 0 8215 904 8402 21726 34091;34092 34092 2 LLEDSALSK GEGTVASWELRVEGRLLEDSALSKYDATKQ LRVEGRLLEDSALSKYDATKQKRKFSSFFK R L L S K Y 1 0 0 1 0 0 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 9 0 974.52843 A0A024R137;A0A024R102;Q96GM5;B4DF50 A0A024R137 339 347 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.010772 58.981 2 0.80886 0.83058 10.959 2 Median 0.80886 0.83058 10.959 2 0 Median NaN NaN NaN 0 0 Median 28301000 13997000 14303000 28301000 13997000 14303000 0 0 0 8216 65 8403 21727;21728 34093;34094;34095 34095 3 LLEEALLR SAGCLASLQQPVGIRLLEEALLRLLPAELP QQPVGIRLLEEALLRLLPAELPAKRVRGKA R L L L R L 1 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 955.57023 P78527 P78527 2892 2899 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0083247 79.116 2 2 0.48481 0.4751 52.576 4 Median 0.69092 0.76406 8.0079 2 0 Median 0.35842 0.3085 1.8825 2 0 Median 108510000 64717000 43790000 99362000 58270000 41092000 9144900 6446900 2698000 8217 1665 8404 21729;21730;21731;21732 34096;34097;34098;34099;34100;34101;34102;34103 34099 8 LLEEEEEK KARRDEESVRIAQTRLLEEEEEKLKQLMQL VRIAQTRLLEEEEEKLKQLMQLKEEQERYI R L L E K L 0 0 0 0 0 0 5 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 1017.4866 B3KSI1;B2RBP7;Q9H4E7 B3KSI1 207 214 DEF6 Differentially expressed in FDCP 6 homolog yes no 2 0.0011347 111.82 1 0.98662 1.0608 NaN 1 Median 0.98662 1.0608 NaN 1 0 Median NaN NaN NaN 0 0 Median 40039000 19095000 20944000 40039000 19095000 20944000 0 0 0 8218 879 8405 21733 34104;34105 34104 2 LLEEEIQAPTSSK YRIDPNVLLDPADEKLLEEEIQAPTSSKRS EKLLEEEIQAPTSSKRSQQHAKVVPWMRKT K L L S K R 1 0 0 0 0 1 3 0 0 1 2 1 0 0 1 2 1 0 0 0 0 0 13 0 1443.7457 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 107 119 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 3.5838E-30 167.18 2 2 1.5052 1.4351 22.305 4 Median 1.5052 1.6732 9.9866 2 0 Median 1.473 1.1885 14.932 2 0 Median 122410000 48500000 73914000 110870000 43414000 67457000 11543000 5086500 6456600 8219 46 8406 21734;21735;21736;21737 34106;34107;34108;34109;34110;34111;34112;34113 34109 8 LLEENVSAFK EANVLATAPDKKKQKLLEENVSAFKTEYDA KKKQKLLEENVSAFKTEYDAVAEKAGKVEA K L L F K T 1 0 1 0 0 0 2 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1148.6077 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 858 867 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.2241E-05 103.55 2 2 1.2684 1.2431 21.864 4 Median 0.87789 1.0183 3.6138 2 0 Median 1.7796 1.4845 0.50649 2 0 Median 569260000 283400000 285870000 477860000 251770000 226090000 91403000 31623000 59780000 8220 2070 8407 21738;21739;21740;21741 34114;34115;34116;34117;34118;34119;34120;34121;34122;34123 34122 10 LLEEQLQHEISNK EKMQQSVYVKDDKIRLLEEQLQHEISNKME IRLLEEQLQHEISNKMEEFKILNDQNKALK R L L N K M 0 0 1 0 0 2 3 0 1 1 3 1 0 0 0 1 0 0 0 0 0 0 13 0 1579.8206 A0A024R663;Q86UP2 A0A024R663 684 696 KTN1 Kinectin yes no 3 0.019942 26.13 1 0.43019 0.36379 NaN 1 Median NaN NaN NaN 0 0 Median 0.43019 0.36379 NaN 1 0 Median 2041700 1114200 927570 0 0 0 2041700 1114200 927570 8221 197 8408 21742 34124 34124 1 LLEESIANLNR QQGQISLSSGETDLKLLEESIANLNRSTSV TDLKLLEESIANLNRSTSVPENPKSSAS__ K L L N R S 1 1 2 0 0 0 2 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 11 0 1270.6881 D6RDA9;Q3MSN4;Q3MSN1;F5ATB8;E5KQF5;H6V745;F1D8N4;B6ZGU6;E5KQF6;P04150 D6RDA9 121 131 NR3C1 Glucocorticoid receptor yes no 2 0.02473 69.423 1 1.9819 1.9865 NaN 1 Median 1.9819 1.9865 NaN 1 0 Median NaN NaN NaN 0 0 Median 9157700 2970100 6187600 9157700 2970100 6187600 0 0 0 8222 1083 8409 21743 34125 34125 0 LLEFQLALK KDAKLYSNRAACYTKLLEFQLALKDCEECI AACYTKLLEFQLALKDCEECIQLEPTFIKG K L L L K D 1 0 0 0 0 1 1 0 0 0 4 1 0 1 0 0 0 0 0 0 0 0 9 0 1073.6485 V9HW72;A8K690;P31948;H0YGI8 V9HW72 407 415 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.0013201 86.794 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1728200 0 1728200 1728200 0 1728200 0 0 0 8223 758 8410 21744;21745 34126;34127 34127 2 LLEGEDAHLSSQQASGQSYSSR DVKTRLEQEIATYRRLLEGEDAHLSSQQAS HLSSQQASGQSYSSREVFTSSSSSSSRQTR R L L S R E 2 1 0 1 0 3 2 2 1 0 3 0 0 0 0 6 0 0 1 0 0 0 22 0 2349.0833 CON__P08779;P08779 CON__P08779 420 441 KRT16 Keratin, type I cytoskeletal 16 yes no 3 3.5069E-09 58.914 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93419000 93419000 0 78372000 78372000 0 15047000 15047000 0 + 8224 1159 8411 21746;21747;21748;21749 34128;34129;34130;34131;34132 34129 5 LLEGEDAHLSSSQFSSGSQSSR DVKTRLEQEIATYRRLLEGEDAHLSSSQFS HLSSSQFSSGSQSSRDVTSSSRQIRTKVMD R L L S R D 1 1 0 1 0 2 2 2 1 0 3 0 0 1 0 8 0 0 0 0 0 0 22 0 2308.0567 CON__P02533;P02533;A0A024R1X6;Q13092;CON__Q61782 CON__P02533 418 439 KRT14;K14 Keratin, type I cytoskeletal 14 no no 3 1.6397E-13 88.79 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88096000 88096000 0 59659000 59659000 0 28437000 28437000 0 + 8225 1150;1176 8412 21750;21751;21752 34133;34134;34135 34135 3 LLEGEDAHLTQYK DVKTRLEQEIATYRRLLEGEDAHLTQYKKE RRLLEGEDAHLTQYKKEPVTTRQVRTIVEE R L L Y K K 1 0 0 1 0 1 2 1 1 0 3 1 0 0 0 0 1 0 1 0 0 0 13 0 1515.7569 CON__Q04695;Q04695;F5GWP8;Q14666 CON__Q04695 387 399 KRT17 Keratin, type I cytoskeletal 17 no no 2;3 9.1196E-09 119.27 4 2 0.41932 0.39029 62.203 4 Median 0.20202 0.2136 22.669 2 0 Median 0.76366 0.61237 1.127 2 0 Median 92842000 77604000 15238000 83166000 72156000 11010000 9676100 5448400 4227600 + 8226 1168 8413 21753;21754;21755;21756;21757;21758 34136;34137;34138;34139;34140;34141;34142 34139 7 LLEGEECR NVKLALDVEIATYRKLLEGEECRMSGDLSS EIATYRKLLEGEECRMSGDLSSNVTVSVTS K L L C R M 0 1 0 0 1 0 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1004.4597 CON__P35908;P35908;Q01546;CON__Q01546;CON__P07744;CON__Q6NXH9;H0YIC5;CON__O95678;O95678;CON__Q8BGZ7;B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;CON__Q7RTS7;CON__Q32MB2;F8W1S1;Q7RTS7;Q86Y46;CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4;B4DQ49 CON__P35908 489 496 KRT2;KRT76;KRT73;KRT75;KRT6C;KRT6A;KRT5;KRT74;KRT78 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 78 no no 2 1.3715E-08 138.33 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 200480000 200480000 0 174220000 174220000 0 26259000 26259000 0 + 8227 1166;1162;859;1154;1147;1180;1170;1178 8414 21759;21760;21761;21762 34143;34144;34145;34146 34144 4 LLEGEEER DIKLALDMEIHAYRKLLEGEEERLRLSPSP EIHAYRKLLEGEEERLRLSPSPTSQRSRGR K L L E R L 0 1 0 0 0 0 4 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 973.47164 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;B4DFR3;A0A0C4DGC5;P20700;E9PBF6;B4DZT3;Q03252;A0A0A7M1X5 P02545 379 386 LMNA;LMNB1;LMNB2 Prelamin-A/C;Lamin-A/C;Lamin-B1;Lamin-B2 no no 2 0.0029606 98.299 2 2 1.216 1.4065 16.97 4 Linear 1.2012 1.4063 0.98504 2 0 Median 1.2427 1.0515 4.1914 2 0 Median 700040000 309330000 390710000 646460000 286240000 360220000 53582000 23088000 30494000 8228 1440;1502;1682 8415 21763;21764;21765;21766 34147;34148;34149;34150;34151;34152;34153 34148 7 LLEGEEQR NSKLGLDIEIATYRRLLEGEEQRLCEGVEA EIATYRRLLEGEEQRLCEGVEAAAPGVGLC R L L Q R L 0 1 0 0 0 1 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 972.48762 A0JNT2;CON__Q61726;A0A087X106;CON__O43790;B4DN72;A8K872;CON__Q6NT21;CON__P78385;CON__Q14533;O43790;P78385;Q14533 A0JNT2 414 421 KRT83;KRT81;KRT86 Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb1 yes no 2 0.030565 58.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5805900 5805900 0 5805900 5805900 0 0 0 0 + 8229 447 8416 21767 34154 34154 1 LLEGEESR NVKMALDIEIATYRKLLEGEESRISLPLPN EIATYRKLLEGEESRISLPLPNFSSLNLRE K L L S R I 0 1 0 0 0 0 3 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 931.46108 CON__P05787;P05787;Q969I0;Q7L4M3;CON__Q9H552;CON__Q9NSB2;CON__Q6ISB0;Q9NSB2;CON__P08729;CON__Q9DCV7;V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;H7C5W5;B3KWQ6;Q9H319;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P41219;P17661;CON__Q3KNV1;P08729 V9HWE1 403 410 KRT8;KRT84;HEL113;VIM;PRPH;tmp_locus_29;DES;KRT7 Keratin, type II cytoskeletal 8;Keratin, type II cuticular Hb4;Vimentin;Peripherin;Desmin;Keratin, type II cytoskeletal 7 no no 2 0.006912 85.212 1 1 1.5469 1.5529 17.32 2 Median 1.1593 1.3739 NaN 1 0 Median 2.0642 1.7552 NaN 1 0 Median 515120000 239880000 275230000 506010000 236550000 269460000 9105900 3334000 5771900 + 8230 1457;1156;1171;1158 8417 21768;21769 34155;34156;34157;34158 34156 4 LLEGTIVNVPEK LRDVGGEGVQQGLLKLLEGTIVNVPEKNSR LLKLLEGTIVNVPEKNSRKLRGETVQVDTT K L L E K N 0 0 1 0 0 0 2 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 12 0 1310.7446 Q9H072;A0A024R5X7;O76031 Q9H072 387 398 DKFZp586J151;CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2 0.0021355 70.1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7198900 0 7198900 7198900 0 7198900 0 0 0 8231 191 8418 21770 34159 34159 1 LLEHLPQEVPYNVQQK SQTPEEICANIIREKLLEHLPQEVPYNVQQ LEHLPQEVPYNVQQKTAVWEEGPGGELVIQ K L L Q K T 0 0 1 0 0 3 2 0 1 0 3 1 0 0 2 0 0 0 1 2 0 0 16 0 1934.0262 O75616;K7EQJ8 O75616 356 371 ERAL1 GTPase Era, mitochondrial yes no 3 0.010717 23.901 1 1.1834 1.1813 NaN 1 Median 1.1834 1.1813 NaN 1 0 Median NaN NaN NaN 0 0 Median 14631000 6743100 7888300 14631000 6743100 7888300 0 0 0 8232 1410 8419 21771 34160;34161 34161 2 LLEIQGK PTTGDAGGREPMEEKLLEIQGKIEAVEMHL GREPMEEKLLEIQGKIEAVEMHLTREHMKR K L L G K I 0 0 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 Q9UKN8 Q9UKN8 669 675 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.027041 86.086 2 0.88521 0.88723 6.3583 2 Median 0.88521 0.88723 6.3583 2 0 Median NaN NaN NaN 0 0 Median 55320000 27356000 27965000 55320000 27356000 27965000 0 0 0 8233 2107 8420 21772;21773 34162;34163 34163 2 LLEIQTEK IRKKRLQLKQASESKLLEIQTEKNKQKIDL KQASESKLLEIQTEKNKQKIDLDSMENSER K L L E K N 0 0 0 0 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 972.54916 B3KVZ3;A0A0S2Z5T0;Q9H3R5;H0Y9E6 B3KVZ3 153 160 CENPH Centromere protein H yes no 2 0.022432 57.177 1 0.63639 0.6694 NaN 1 Median 0.63639 0.6694 NaN 1 0 Median NaN NaN NaN 0 0 Median 19724000 13187000 6537600 19724000 13187000 6537600 0 0 0 8234 585 8421 21774 34164 34164 1 LLELADIDPTLRPR RMLFPEAQRLESTGRLLELADIDPTLRPRQ RLLELADIDPTLRPRQLSISHFKSLCDVYR R L L P R Q 1 2 0 2 0 0 1 0 0 1 4 0 0 0 2 0 1 0 0 0 0 0 14 1 1620.9199 E5KTM5;Q8WVM0;A8K0B9 E5KTM5 280 293 TFB1M Dimethyladenosine transferase 1, mitochondrial yes no 3 0.0013745 60.448 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8235 1210 8422 21775;21776 34165;34166 34166 2 LLELEQDASSAK LNMDLDRASLDLMIRLLELEQDASSAKLLN MIRLLELEQDASSAKLLNE___________ R L L A K L 2 0 0 1 0 1 2 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 12 0 1302.6667 A8K273;B2RTX8;Q7Z5K2;Q8WVX6 A8K273 747 758 WAPAL Wings apart-like protein homolog yes no 2 0.00019656 91.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4514000 0 4514000 4514000 0 4514000 0 0 0 8236 708 8423 21777 34167 34167 1 LLELGPKPEVAQQTR FKLKNFKTAATFARRLLELGPKPEVAQQTR LLELGPKPEVAQQTRKILSACEKNPTDAYQ R L L T R K 1 1 0 0 0 2 2 1 0 0 3 1 0 0 2 0 1 0 0 1 0 0 15 1 1677.9414 P53621 P53621 1128 1142 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 3.7183E-06 94.461 2 1.4468 1.6869 6.3506 2 Median 1.4468 1.6869 6.3506 2 0 Median NaN NaN NaN 0 0 Median 69953000 25110000 44843000 69953000 25110000 44843000 0 0 0 8237 1607 8424 21778;21779 34168;34169;34170 34170 3 LLELQELVLR YISRLAQDKEEMKVKLLELQELVLRLVGDR EMKVKLLELQELVLRLVGDRNEWHGRFLAA K L L L R L 0 1 0 0 0 1 2 0 0 0 5 0 0 0 0 0 0 0 0 1 0 0 10 0 1224.7442 Q08379;Q5HYE0;A0A087WYC0;Q5PXD5 Q08379 882 891 GOLGA2;DKFZp686K0319 Golgin subfamily A member 2 yes no 2 0.016751 55.064 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8238 1692 8425 21780 34171 34171 1 LLELTSSYSPDVSDYK LLAAAPQVGEKIAFKLLELTSSYSPDVSDY LELTSSYSPDVSDYKEGRILSHNPETQQVD K L L Y K E 0 0 0 2 0 0 1 0 0 0 3 1 0 0 1 4 1 0 2 1 0 0 16 0 1815.8778 P38432 P38432 481 496 COIL Coilin yes yes 2 0.0028077 58.674 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2978300 0 2978300 0 0 0 2978300 0 2978300 8239 1552 8426 21781;21782 34172;34173 34173 2 LLENPTINHQK IEEEFVSLVTGCCYRLLENPTINHQKNRPT CCYRLLENPTINHQKNRPTREAITHLLGVA R L L Q K N 0 0 2 0 0 1 1 0 1 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1305.7041 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 205 215 NCAPD2 Condensin complex subunit 1 yes no 2;3 1.7367E-52 206.78 5 6 1.404 1.1902 8.9265 9 Median 1.0002 1.1329 12.414 4 0 Median 1.5009 1.1902 3.7891 5 0 Median 360670000 182290000 178380000 326900000 168530000 158370000 33769000 13760000 20009000 8240 908 8427 21783;21784;21785;21786;21787;21788;21789;21790;21791;21792;21793 34174;34175;34176;34177;34178;34179;34180;34181;34182;34183;34184;34185;34186;34187;34188 34180 14 LLENSTLNSK LENSAFTADRHKKRKLLENSTLNSKLLKVN HKKRKLLENSTLNSKLLKVNGSTTAICATG K L L S K L 0 0 2 0 0 0 1 0 0 0 3 1 0 0 0 2 1 0 0 0 0 0 10 0 1117.5979 B3KMX7;Q498Y2;H0YLB7;H0YKU8;Q6JHV3;H0YMI4;Q9Y6I4;H0YL81;H0YLG0;B4DV65 B3KMX7 51 60 USP3 Ubiquitinyl hydrolase 1;Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 2 0.031518 42.19 1 1.3399 1.1832 NaN 1 Median NaN NaN NaN 0 0 Median 1.3399 1.1832 NaN 1 0 Median 902640 360000 542640 0 0 0 902640 360000 542640 8241 910 8428 21794 34189 34189 1 LLEPFEVR TVLAASCARHRRSLRLLEPFEVRTRLLGWD RHRRSLRLLEPFEVRTRLLGWDDRAFYLEA R L L V R T 0 1 0 0 0 0 2 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 8 0 1001.5546 Q8WUY1 Q8WUY1 113 120 THEM6 Protein THEM6 yes yes 2 0.0045404 89.752 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8242 1941 8429 21795 34190 34190 1 LLEPVDHGK DLQTALTGYQTKQRKLLEPVDHGKIEYEPF QTKQRKLLEPVDHGKIEYEPFRKNFYVEVP K L L G K I 0 0 0 1 0 0 1 1 1 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1006.5447 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 317 325 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2;3 0.0018407 80.165 3 1.1165 1.1138 91.655 2 Median 1.1165 1.1138 91.655 2 0 Median NaN NaN NaN 0 0 Median 61803000 27221000 34582000 61803000 27221000 34582000 0 0 0 8243 511 8430 21796;21797;21798 34191;34192;34193;34194 34193 4 LLEPVLLLGK GRPLEMIEPRTLQYKLLEPVLLLGKERFAG TLQYKLLEPVLLLGKERFAGVDIRVRVKGG K L L G K E 0 0 0 0 0 0 1 1 0 0 5 1 0 0 1 0 0 0 0 1 0 0 10 0 1093.7111 P62249;M0R210;M0R3H0;A0A087WZ27;M0R1M5;M0QX76;Q6IPX4 P62249 51 60 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 2.4394E-09 127.56 4 2 0.96791 0.97253 27.804 4 Median 1.0465 1.2404 1.2497 2 0 Median 0.89134 0.76647 0.51457 2 0 Median 2188200000 1082200000 1106000000 1964900000 962060000 1002900000 223220000 120090000 103130000 8244 1636 8431 21799;21800;21801;21802;21803;21804 34195;34196;34197;34198;34199;34200;34201;34202;34203;34204;34205;34206;34207;34208;34209;34210;34211;34212 34203 18 LLEQALVIEEQLR NFLEIKNKFLARRFKLLEQALVIEEQLRRA FKLLEQALVIEEQLRRAAYLNMSEDPSHPS K L L L R R 1 1 0 0 0 2 3 0 0 1 4 0 0 0 0 0 0 0 0 1 0 0 13 0 1552.8825 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;Q6ZU36;I3L229;H7C3H7;H7C0J3;Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4 F5GWX5 1781 1793 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 1.7286E-13 130.56 2 2 1.1358 1.1285 38.574 4 Median 0.70631 0.80455 3.6566 2 0 Median 1.8725 1.5672 2.2355 2 0 Median 184930000 100060000 84868000 147630000 86861000 60769000 37297000 13197000 24099000 8245 515;1701 8432 21805;21806;21807;21808 34213;34214;34215;34216;34217;34218;34219;34220 34216 8 LLEQALVIEEQLRR NFLEIKNKFLARRFKLLEQALVIEEQLRRA KLLEQALVIEEQLRRAAYLNMSEDPSHPSM K L L R R A 1 2 0 0 0 2 3 0 0 1 4 0 0 0 0 0 0 0 0 1 0 0 14 1 1708.9836 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;Q6ZU36;I3L229;H7C3H7;H7C0J3;Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4 F5GWX5 1781 1794 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 3 0.00049234 49.929 1 2.0601 1.7585 NaN 1 Median NaN NaN NaN 0 0 Median 2.0601 1.7585 NaN 1 0 Median 6660200 2135800 4524400 0 0 0 6660200 2135800 4524400 8246 515;1701 8433 21809 34221;34222 34222 2 LLEQGLR RLLRASGRTPEAVQKLLEQGLRHSQDLAFL RTPEAVQKLLEQGLRHSQDLAFLSMLNDIA K L L L R H 0 1 0 0 0 1 1 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 827.4865 A0A0U1RQF0;P49327 A0A0U1RQF0 437 443 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.032919 64.776 1 1.4489 1.4792 NaN 1 Median 1.4489 1.4792 NaN 1 0 Median NaN NaN NaN 0 0 Median 26731000 9657500 17074000 26731000 9657500 17074000 0 0 0 8247 587 8434 21810 34223 34223 1 LLEQQELR PLVSKISEKRKKKLRLLEQQELREKEEEEE KRKKKLRLLEQQELREKEEEEEPEGKPSDA R L L L R E 0 1 0 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 1027.5662 Q9BSC4;B4DS83 Q9BSC4 523 530 NOL10 Nucleolar protein 10 yes no 2 1.1234E-08 139.28 4 2 1.4302 1.165 3.4648 2 Median NaN NaN NaN 0 0 Median 1.4302 1.165 3.4648 2 0 Median 143440000 10241000 133200000 118570000 0 118570000 24864000 10241000 14623000 8248 2000 8435 21811;21812;21813;21814;21815;21816 34224;34225;34226;34227;34228;34229;34230;34231 34224 8 LLESFETMASQTNLVDLDLGGK AHLNALKMNCYALIRLLESFETMASQTNLV MASQTNLVDLDLGGKGKKARTKAAHGFDWE R L L G K G 1 0 1 2 0 1 2 2 0 0 5 1 1 1 0 2 2 0 0 1 0 0 22 0 2380.1832 B3KMS0;Q15021;B3KY03;B4E0B7;A0PJ76 B3KMS0 127 148 NCAPD2 Condensin complex subunit 1 yes no 2 7.6046E-19 98.694 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63371000 63371000 0 63371000 63371000 0 0 0 0 8249 908 8436 21817;21818 34232;34233 34232 740 2 LLESLDQLELR GRFCRSSSMADRSSRLLESLDQLELRVEAL RSSRLLESLDQLELRVEALREAATAVEQEK R L L L R V 0 1 0 1 0 1 2 0 0 0 5 0 0 0 0 1 0 0 0 0 0 0 11 0 1327.7347 B3KN59;B3KM36;O95816 B3KN59 28 38 BAG2 BAG family molecular chaperone regulator 2 yes no 2 1.17E-16 152.97 2 2 1.2035 1.0098 34.767 4 Linear 1.1694 1.3382 0.19654 2 0 Median 0.9017 0.73459 5.359 2 0 Median 224480000 103080000 121410000 196500000 88659000 107840000 27988000 14418000 13569000 8250 900 8437 21819;21820;21821;21822 34234;34235;34236;34237;34238;34239;34240;34241 34235 8 LLETCSIALVGK KMLMKWKEMADRYDRLLETCSIALVGKYTK YDRLLETCSIALVGKYTKFSDSYASVIKAL R L L G K Y 1 0 0 0 1 0 1 1 0 1 3 1 0 0 0 1 1 0 0 1 0 0 12 0 1302.7217 P17812;B4E1E0;B4DMB5 P17812 295 306 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.00067627 81.338 2 1.8578 1.9243 NaN 1 Median 1.8578 1.9243 NaN 1 0 Median NaN NaN NaN 0 0 Median 29467000 8273800 21194000 29467000 8273800 21194000 0 0 0 8251 1494 8438 21823;21824 34242;34243 34243 2 LLETIHWR YCKAARCHACKRQGKLLETIHWRGQIRHFC ACKRQGKLLETIHWRGQIRHFCNQQCLLRF K L L W R G 0 1 0 0 0 0 1 0 1 1 2 0 0 0 0 0 1 1 0 0 0 0 8 0 1066.5924 A6NHB5;Q14202;A6NHN7 A6NHB5 731 738 ZMYM3 Zinc finger MYM-type protein 3 yes no 3 0.018466 35.295 1 0.46875 0.48773 NaN 1 Median 0.46875 0.48773 NaN 1 0 Median NaN NaN NaN 0 0 Median 5348900 3530500 1818500 5348900 3530500 1818500 0 0 0 8252 681 8439 21825 34244 34244 1 LLETTEEDK KEMKAAAREEAKNIKLLETTEEDKQKNFLF EAKNIKLLETTEEDKQKNFLFLRLWDRNMD K L L D K Q 0 0 0 1 0 0 3 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 9 0 1076.5237 Q7L0Y3;C9JVB6 Q7L0Y3 165 173 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 0.0011742 88.948 2 1.6381 1.7307 4.6241 2 Median 1.6381 1.7307 4.6241 2 0 Median NaN NaN NaN 0 0 Median 36014000 14727000 21287000 36014000 14727000 21287000 0 0 0 8253 1871 8440 21826;21827 34245;34246;34247 34246 3 LLETYLILVK VTKTNCCESSEQIKRLLETYLILVKHGSGT EQIKRLLETYLILVKHGSGTKIPTPADVCK R L L V K H 0 0 0 0 0 0 1 0 0 1 4 1 0 0 0 0 1 0 1 1 0 0 10 0 1203.7479 O75691 O75691 322 331 UTP20 Small subunit processome component 20 homolog yes yes 2 1.0311E-09 133.58 2 2 1.4889 1.3648 17.855 4 Median 1.18 1.1894 5.5498 2 0 Median 1.9078 1.5947 8.1043 2 0 Median 15477000 6534600 8942200 12662000 5463200 7199100 2814500 1071400 1743100 8254 1412 8441 21828;21829;21830;21831 34248;34249;34250;34251;34252;34253;34254;34255 34251 8 LLEVDLK VREKDIQRFFSGYGRLLEVDLKNGYGFVEF RFFSGYGRLLEVDLKNGYGFVEFEDSRDAD R L L L K N 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 V9HVZ0;A8K588;Q13247;Q59GY3;B5BU15 V9HVZ0 28 34 HEL-S-91;SRSF6;SFRS6 Serine/arginine-rich splicing factor 6 yes no 2 0.028834 71.296 1 2 0.93238 0.75931 41.495 3 Median 1.3537 1.5216 NaN 1 0 Median 0.91931 0.74238 3.1883 2 0 Median 86041000 41025000 45016000 70108000 32983000 37125000 15933000 8041800 7891600 8255 748 8442 21832;21833;21834 34256;34257;34258;34259 34256 4 LLEVQGSRPGK MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL IIGRLLEVQGSRPGKNVQLTENEIRGLCLK R L L G K N 0 1 0 0 0 1 1 2 0 0 2 1 0 0 1 1 0 0 0 1 0 0 11 1 1182.6721 P62136;E9PMD7 P62136 16 26 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2;3 3.7218E-07 114.4 4 2 0.84263 0.97478 9.3634 6 Median 0.79092 0.94503 5.97 4 0 Median 1.2721 1.0581 13.028 2 0 Median 233720000 116890000 116840000 224080000 112780000 111300000 9638900 4103900 5535000 8256 1632 8443 21835;21836;21837;21838;21839;21840 34260;34261;34262;34263;34264;34265;34266;34267 34262 8 LLEVYDQLFK FVIQTMNEIGVPLPRLLEVYDQLFKSRDPF VPLPRLLEVYDQLFKSRDPFWNRMKKPLHL R L L F K S 0 0 0 1 0 1 1 0 0 0 3 1 0 1 0 0 0 0 1 1 0 0 10 0 1266.686 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1261 1270 NUP155 Nuclear pore complex protein Nup155 yes no 2 6.4846E-08 112.84 2 2 1.3599 1.2506 8.132 4 Median 1.2512 1.2698 6.9383 2 0 Median 1.4716 1.1985 10.806 2 0 Median 34804000 16625000 18179000 30577000 14705000 15872000 4226700 1920200 2306600 8257 39 8444 21841;21842;21843;21844 34268;34269;34270;34271;34272;34273;34274 34268 7 LLEYLR IAKPEQETRLAATEKLLEYLRGRPKGSEMK ETRLAATEKLLEYLRGRPKGSEMKYALKRL K L L L R G 0 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 6 0 805.46979 Q9BQG0;B4DZZ1;B4DWP5 Q9BQG0 57 62 MYBBP1A Myb-binding protein 1A yes no 2 0.029319 128.89 2 0.91665 1.0043 NaN 1 Median 0.91665 1.0043 NaN 1 0 Median NaN NaN NaN 0 0 Median 45803000 27976000 17827000 45803000 27976000 17827000 0 0 0 8258 1997 8445 21845;21846 34275;34276 34276 2 LLFDETQGK SATSRNIGVRRIQIKLLFDETQGKPAVAVI RRIQIKLLFDETQGKPAVAVIDNGRGMTSK K L L G K P 0 0 0 1 0 1 1 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 9 0 1049.5393 A6NHR9 A6NHR9 169 177 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0017345 81.548 2 1.1769 1.2722 NaN 1 Median 1.1769 1.2722 NaN 1 0 Median NaN NaN NaN 0 0 Median 22543000 11065000 11478000 22543000 11065000 11478000 0 0 0 8259 684 8446 21847;21848 34277;34278;34279;34280 34279 4 LLFNDVQTLK GEVERDLDKADSMIRLLFNDVQTLKDGRHP DSMIRLLFNDVQTLKDGRHPQGEQMYRRVY R L L L K D 0 0 1 1 0 1 0 0 0 0 3 1 0 1 0 0 1 0 0 1 0 0 10 0 1189.6707 Q15149;E9PMV1 Q15149 588 597 PLEC Plectin yes no 2 0.012313 50.805 1 1.0594 1.0382 NaN 1 Median 1.0594 1.0382 NaN 1 0 Median NaN NaN NaN 0 0 Median 21197000 8810700 12386000 21197000 8810700 12386000 0 0 0 8260 1754 8447 21849 34281 34281 1 LLFPAVDDNLLK ASPRYIFTMLSTLARLLFPAVDDNLLKFLY LARLLFPAVDDNLLKFLYDDNQRVEPEWYI R L L L K F 1 0 1 2 0 0 0 0 0 0 4 1 0 1 1 0 0 0 0 1 0 0 12 0 1356.7653 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 809 820 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 8.1241E-05 96.89 2 2 0.78898 0.7659 16.846 4 Median 0.58195 0.66403 2.5886 2 0 Median 1.0674 0.88653 3.0891 2 0 Median 412800000 248020000 164780000 323440000 205950000 117490000 89357000 42069000 47288000 8261 1679 8448 21850;21851;21852;21853 34282;34283;34284;34285;34286;34287;34288 34282 7 LLFSNTAAQK VKKHNGVGGSPPKSKLLFSNTAAQKLRGMD PPKSKLLFSNTAAQKLRGMDEVYNLFYVNN K L L Q K L 2 0 1 0 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1091.5975 Q96ST3 Q96ST3 866 875 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0003605 88.819 2 0.83192 0.87685 NaN 1 Median 0.83192 0.87685 NaN 1 0 Median NaN NaN NaN 0 0 Median 22179000 8021900 14157000 22179000 8021900 14157000 0 0 0 8262 1990 8449 21854;21855 34289;34290;34291 34289 3 LLFSSSAAFAK NYNLMNIDINNNELRLLFSSSAAFAKFEIT NELRLLFSSSAAFAKFEITLFLSAYYPSVP R L L A K F 3 0 0 0 0 0 0 0 0 0 2 1 0 2 0 3 0 0 0 0 0 0 11 0 1140.6179 Q8NG31;H0YCZ2 Q8NG31 2267 2277 CASC5 Protein CASC5 yes no 2 0.00092259 71.451 2 2 0.85326 0.78242 15.334 4 Median 0.68455 0.70523 5.2559 2 0 Median 1.1358 0.89716 9.918 2 0 Median 46927000 27580000 19347000 38947000 23847000 15100000 7979600 3732800 4246800 8263 1928 8450 21856;21857;21858;21859 34292;34293;34294;34295;34296;34297;34298 34292 7 LLFTMLEK KFCMISATFCDSQLRLLFTMLEKSPLPIVR FCDSQLRLLFTMLEKSPLPIVRSNLMVATG R L L E K S 0 0 0 0 0 0 1 0 0 0 3 1 1 1 0 0 1 0 0 0 0 0 8 0 993.55689 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1058 1065 NCAPD2 Condensin complex subunit 1 yes no 2 0.013837 57.047 3 4 1.2764 1.3608 25.792 7 Median 1.2764 1.3847 5.4334 3 0 Median 1.2967 1.0306 28.671 4 0 Median 211400000 99503000 111890000 195620000 92617000 103000000 15779000 6885800 8892800 8264 908 8451;8452 21860;21861;21862;21863;21864;21865;21866 34299;34300;34301;34302;34303;34304;34305;34306;34307;34308;34309;34310 34303 741 12 LLFWGGSYGGAGQPQLISR HFALMQRDSWVDIFRLLFWGGSYGGAGQPQ GGSYGGAGQPQLISRNWFGLPGRLDAAMAG R L L S R N 1 1 0 0 0 2 0 5 0 1 3 0 0 1 1 2 0 1 1 0 0 0 19 0 2006.0374 CON__Q3ZBS7 CON__Q3ZBS7 323 341 yes yes 2 3.2711E-17 108.17 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41679000 41679000 0 36217000 36217000 0 5462400 5462400 0 + 8265 1173 8453 21867;21868;21869 34311;34312;34313 34312 3 LLGAALPLLTK LLKMQFWPASYLCFRLLGAALPLLTKEQLH LCFRLLGAALPLLTKEQLHLVMQGDVIRHY R L L T K E 2 0 0 0 0 0 0 1 0 0 5 1 0 0 1 0 1 0 0 0 0 0 11 0 1108.722 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 308 318 MYBBP1A Myb-binding protein 1A yes no 2 0.00022163 91.867 2 2 0.98371 0.92819 9.5152 4 Median 0.89152 1.0062 4.7999 2 0 Median 1.0791 0.86317 3.6537 2 0 Median 215550000 110580000 104970000 173560000 91099000 82464000 41987000 19482000 22505000 8266 1997 8454 21870;21871;21872;21873 34314;34315;34316;34317;34318;34319;34320;34321;34322 34319 9 LLGASELPIVTPALR IGMVVKTGVVPQLVKLLGASELPIVTPALR LLGASELPIVTPALRAIGNIVTGTDEQTQV K L L L R A 2 1 0 0 0 0 1 1 0 1 4 0 0 0 2 1 1 0 0 1 0 0 15 0 1548.9239 Q7Z726;A8K7D9;P52292 Q7Z726 301 315 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 1.3719E-15 134.75 2 2 0.79237 0.78129 51.627 4 Median 1.0795 1.2246 0.67254 2 0 Median 0.58118 0.5008 0.0073723 2 0 Median 337420000 174170000 163240000 247950000 118730000 129210000 89473000 55441000 34031000 8267 769 8455 21874;21875;21876;21877 34323;34324;34325;34326;34327;34328;34329;34330 34329 8 LLGCQSIEK TGGMFPLRGQTSNTKLLGCQSIEKFRSHGD QTSNTKLLGCQSIEKFRSHGDREEGVNEAL K L L E K F 0 0 0 0 1 1 1 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1046.543 Q8WYP5;Q96M44 Q8WYP5 351 359 AHCTF1 Protein ELYS yes no 2 0.003648 69.812 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8268 1945 8456 21878;21879 34331;34332 34331 2 LLGEEIEYLK PKMLEEFSLVVHHCRLLGEEIEYLKRWGPN VHHCRLLGEEIEYLKRWGPNYNLMNIDINN R L L L K R 0 0 0 0 0 0 3 1 0 1 3 1 0 0 0 0 0 0 1 0 0 0 10 0 1205.6544 Q8NG31;H0YCZ2 Q8NG31 2238 2247 CASC5 Protein CASC5 yes no 2 0.0027721 67.563 1 1 0.82764 0.74065 0.24588 2 Median 0.7204 0.73936 NaN 1 0 Median 0.95085 0.74193 NaN 1 0 Median 21211000 10800000 10410000 17754000 9141500 8612200 3457300 1658900 1798300 8269 1928 8457 21880;21881 34333;34334 34333 2 LLGEQYYK ______________________________ VVENVVKLLGEQYYKDAMEQCHNYNARLCA K L L Y K D 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 8 0 1012.5229 A0A024R582;J3KMZ8;Q92785;E9PN04 A0A024R582 11 18 DPF2 Zinc finger protein ubi-d4 yes no 2 0.024045 56.122 1 1.1659 1.1838 NaN 1 Median 1.1659 1.1838 NaN 1 0 Median NaN NaN NaN 0 0 Median 13606000 2963900 10643000 13606000 2963900 10643000 0 0 0 8270 174 8458 21882 34335 34335 1 LLGGFQETCSK PFRSEVCFGKEGLWKLLGGFQETCSKAIRV GLWKLLGGFQETCSKAIRVGVIGFPNVGKS K L L S K A 0 0 0 0 1 1 1 2 0 0 2 1 0 1 0 1 1 0 0 0 0 0 11 0 1238.5965 A0A024R2Z6;Q9BVP2 A0A024R2Z6 231 241 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0004486 77.662 1 2 1.1694 0.92226 4.1405 3 Median 0.84345 0.91464 NaN 1 0 Median 1.1887 0.95378 4.7523 2 0 Median 63729000 30960000 32770000 44893000 22012000 22881000 18836000 8947600 9888500 8271 125 8459 21883;21884;21885 34336;34337;34338;34339;34340 34339 5 LLGGLAVR RGLCAIAQAESLRYKLLGGLAVRRACYGVL AESLRYKLLGGLAVRRACYGVLRFIMESGA K L L V R R 1 1 0 0 0 0 0 2 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 797.51232 P23396;Q53G83;E9PL09;F2Z2S8;H0YCJ7;H0YF32;A7E2S3;Q9NQS8 P23396 109 116 RPS3 40S ribosomal protein S3 yes no 2 0.0066106 86.512 1 1 1.0265 1.0149 35.408 2 Median 1.1068 1.3037 NaN 1 0 Median 0.95194 0.79012 NaN 1 0 Median 258450000 128770000 129690000 237590000 119200000 118390000 20861000 9566700 11295000 8272 1511 8460 21886;21887 34341;34342 34341 2 LLGGVTIAQGGVLPNIQAVLLPK RHLQLAIRNDEELNKLLGGVTIAQGGVLPN QGGVLPNIQAVLLPKKTESHHHKAQSK___ K L L P K K 2 0 1 0 0 2 0 4 0 2 5 1 0 0 2 0 1 0 0 3 0 0 23 0 2270.3726 Q8IUE6;Q96QV6;P16104 Q96QV6 97 119 HIST2H2AB;HIST1H2AA;H2AFX Histone H2A type 2-B;Histone H2A type 1-A;Histone H2AX no no 2 0 310.33 7 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8273 1487;1890 8461 21888;21889;21890;21891;21892;21893;21894;21895 34343;34344;34345;34346;34347;34348;34349;34350 34343 8 LLGHEVEDVIIK FAVDETSVSGYIYHKLLGHEVEDVIIKCQL YHKLLGHEVEDVIIKCQLPKRFTAQGLPDL K L L I K C 0 0 0 1 0 0 2 1 1 2 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1363.7711 A0A024R7L5;A0A024R7L8;Q92900;A0A059XBJ1;A0A059XAL2;A0A059XAJ5;A0A059XG67;A0A059X4U2 A0A024R7L5 445 456 UPF1 Regulator of nonsense transcripts 1 yes no 3 0.033806 23.711 1 1.8754 1.9553 NaN 1 Median 1.8754 1.9553 NaN 1 0 Median NaN NaN NaN 0 0 Median 11013000 3751200 7261800 11013000 3751200 7261800 0 0 0 8274 231 8462 21896 34351;34352 34351 2 LLGHLVK VEMGDEDDLSTPNEKLLGHLVKEKYDTDFY DLSTPNEKLLGHLVKEKYDTDFYILDKYPL K L L V K E 0 0 0 0 0 0 0 1 1 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 778.50651 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 342 348 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.039723 59.795 1 1.6048 1.6169 NaN 1 Median 1.6048 1.6169 NaN 1 0 Median NaN NaN NaN 0 0 Median 27928000 11347000 16581000 27928000 11347000 16581000 0 0 0 8275 610 8463 21897 34353 34353 1 LLGIFEQNQDRK REVYEEAGVKGKLGRLLGIFEQNQDRKHRT LGRLLGIFEQNQDRKHRTYVYVLTVTEILE R L L R K H 0 1 1 1 0 2 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 12 1 1459.7783 B2RE29;A0A024RBG1 B2RE29 80 91 NUDT4 yes no 2;3 0.0095438 38.293 2 0.71978 0.84864 4.4239 2 Median 0.71978 0.84864 4.4239 2 0 Median NaN NaN NaN 0 0 Median 184070000 101170000 82902000 184070000 101170000 82902000 0 0 0 8276 337 8464 21898;21899 34354;34355 34354 2 LLGLTPPEGGAGDRSEEEASSTEK VTVTTISDLDLSGARLLGLTPPEGGAGDRS GAGDRSEEEASSTEKPTKALPRKSRDPLLS R L L E K P 2 1 0 1 0 0 5 4 0 0 3 1 0 0 2 3 2 0 0 0 0 0 24 1 2429.1558 B4DGP7;V9GYY5;A0A024R1M6;Q9UGY1 B4DGP7 120 143 MGC3731;NOL12 Nucleolar protein 12 yes no 3 0.0016738 40.012 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3314800 3314800 0 3314800 3314800 0 0 0 0 8277 80 8465 21900 34356 34356 1 LLGNTFVALSDLR EEDQRLINLVGESLRLLGNTFVALSDLRCN LRLLGNTFVALSDLRCNLACTPPRHLHVVR R L L L R C 1 1 1 1 0 0 0 1 0 0 4 0 0 1 0 1 1 0 0 1 0 0 13 0 1417.7929 A0A0G2JL47;A0A024RCR6;A0A0G2JK23;P46379;F6S6P2;X6REW1;A0A0G2JJM1 A0A0G2JL47 326 338 BAT3;BAG6 Large proline-rich protein BAG6 yes no 2 0.00015608 85.958 1 1.3769 1.3762 NaN 1 Median 1.3769 1.3762 NaN 1 0 Median NaN NaN NaN 0 0 Median 16512000 8145100 8366900 16512000 8145100 8366900 0 0 0 8278 368 8466 21901 34357 34357 1 LLGNVLVVVLAR ELHCDKLHVDPENFRLLGNVLVVVLARRFG NFRLLGNVLVVVLARRFGSEFSPELQASFQ R L L A R R 1 1 1 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 4 0 0 12 0 1264.8231 CON__Q3SX09;CON__P02070 CON__Q3SX09 160 171 yes no 2 2.0889E-47 175.51 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39925000 39925000 0 13091000 13091000 0 26834000 26834000 0 + 8279 1172 8467 21902;21903;21904;21905;21906 34358;34359;34360;34361;34362 34358 5 LLGPDAAINLTDPDGALAK LAALKQQLVASHLEKLLGPDAAINLTDPDG DAAINLTDPDGALAKRLLLQLEATKNSKGG K L L A K R 4 0 1 3 0 0 0 2 0 1 4 1 0 0 2 0 1 0 0 0 0 0 19 0 1863.9942 A8K8J9;F8W1I6;B3KTX4;V9HW58;Q53H88;Q13561;H0YI98;F8VW18 A8K8J9 70 88 DCTN2;HEL-S-77 Dynactin subunit 2 yes no 2 0.051792 24.275 1 1.2377 0.97932 NaN 1 Median NaN NaN NaN 0 0 Median 1.2377 0.97932 NaN 1 0 Median 2327700 1141200 1186600 0 0 0 2327700 1141200 1186600 8280 777 8468 21907 34363 34363 1 LLGQFTLIGIPPAPR IKVCQGEREMAGDNKLLGQFTLIGIPPAPR LLGQFTLIGIPPAPRGVPQIEVTFDIDANG K L L P R G 1 1 0 0 0 1 0 2 0 2 3 0 0 1 3 0 1 0 0 0 0 0 15 0 1591.945 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z4T3;A1XP52;H0Y8S0 B7Z4V2 485 499 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 2.7571E-07 112.13 2 2.6193 2.8094 4.7174 2 Median 2.6193 2.8094 4.7174 2 0 Median NaN NaN NaN 0 0 Median 81516000 21781000 59736000 81516000 21781000 59736000 0 0 0 8281 1092 8469 21908;21909 34364;34365;34366;34367;34368;34369;34370;34371 34367 8 LLGQPSLDSLPIPAPR GSGKTLSYLLPLLQRLLGQPSLDSLPIPAP LGQPSLDSLPIPAPRGLVLVPSRELAQQVR R L L P R G 1 1 0 1 0 1 0 1 0 1 4 0 0 0 4 2 0 0 0 0 0 0 16 0 1672.9512 Q9NUL7 Q9NUL7 190 205 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 2 0.00015204 64.878 2 0.75128 0.75935 13.664 2 Median 0.75128 0.75935 13.664 2 0 Median NaN NaN NaN 0 0 Median 14665000 8430600 6234700 14665000 8430600 6234700 0 0 0 8282 2072 8470 21910;21911 34372;34373;34374;34375 34374 3 LLGSGYGGLTGGSSR VSQSQPGSRSSSPGKLLGSGYGGLTGGSSR LLGSGYGGLTGGSSRGPPVTPSSEKRSKIP K L L S R G 0 1 0 0 0 0 0 6 0 0 3 0 0 0 0 3 1 0 1 0 0 0 15 0 1380.6997 B7Z5R7;B7Z4E5;B7Z7Q8;H0Y5T1;F8WA11;Q7Z460;Q6TAR3 B7Z5R7 463 477 CLASP1 CLIP-associating protein 1 yes no 2 0.028894 53.569 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4071300 4071300 0 4071300 4071300 0 0 0 0 8283 1090 8471 21912 34376 34376 1 LLGSLYALGIPK LNSQIASVWHGTLSKLLGSLYALGIPKASK LSKLLGSLYALGIPKASKELQSVEQEVRWR K L L P K A 1 0 0 0 0 0 0 2 0 1 4 1 0 0 1 1 0 0 1 0 0 0 12 0 1243.754 D3DVL7;B4DU42;Q969Z0;C9IZN7;B3KM73;C9J7P5 D3DVL7 95 106 TBRG4 Protein TBRG4 yes no 2 1.7974E-12 126.07 2 2 1.4848 1.3705 31.498 4 Median 1.7465 1.8119 4.988 2 0 Median 1.2568 1.0532 2.7392 2 0 Median 23942000 9627900 14314000 21105000 8359200 12746000 2837200 1268700 1568500 8284 1036 8472 21913;21914;21915;21916 34377;34378;34379;34380;34381;34382;34383 34378 7 LLGSMPENAQIDDDVFDK NSNAVRFRVCLLINKLLGSMPENAQIDDDV SMPENAQIDDDVFDKINKAMLIRLKDKIPN K L L D K I 1 0 1 4 0 1 1 1 0 1 2 1 1 1 1 1 0 0 0 1 0 0 18 0 2005.9303 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 125 142 NCAPG Condensin complex subunit 3 yes no 2 5.7981E-52 174.95 2 4 1.2017 1.3151 18.898 6 Median 1.2017 1.3706 3.7783 2 0 Median 1.3862 1.1217 21.012 4 0 Median 356890000 170650000 186240000 266900000 131010000 135890000 89993000 39639000 50354000 8285 1995 8473;8474 21917;21918;21919;21920;21921;21922 34384;34385;34386;34387;34388;34389;34390;34391;34392 34385 1826 9 LLGSTLTSEEK YENNVHKMQLPFSSKLLGSTLTSEEKQERR FSSKLLGSTLTSEEKQERRQQQLRRLQELN K L L E K Q 0 0 0 0 0 0 2 1 0 0 3 1 0 0 0 2 2 0 0 0 0 0 11 0 1176.6238 Q9H9F9 Q9H9F9 284 294 ACTR5 Actin-related protein 5 yes yes 2 0.0012874 68.657 2 1 0.81083 0.84692 25.792 3 Median 0.73942 0.77091 13.298 2 0 Median 1.4544 1.1686 NaN 1 0 Median 39185000 19881000 19304000 36699000 18796000 17903000 2486200 1085000 1401200 8286 2045 8475 21923;21924;21925 34393;34394;34395;34396 34393 4 LLGTIYTAAEEIEAVGGK ANIVIAAKTAQPHPKLLGTIYTAAEEIEAV TIYTAAEEIEAVGGKALPCIVDVRDEQQIS K L L G K A 3 0 0 0 0 0 3 3 0 2 2 1 0 0 0 0 2 0 1 1 0 0 18 0 1833.9724 B2R923;A0A024R159;Q6YN16 B2R923 50 67 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 0.00015 82.543 3 3.0452 3.1119 14.983 2 Median 3.0452 3.1119 14.983 2 0 Median NaN NaN NaN 0 0 Median 21164000 5702600 15461000 21164000 5702600 15461000 0 0 0 8287 70 8476 21926;21927;21928 34397;34398;34399;34400;34401 34400 5 LLGTPDIGSISNLLIK SSASVPGHVTLTNPRLLGTPDIGSISNLLI LGTPDIGSISNLLIKASQQSLGIQDQPVAL R L L I K A 0 0 1 1 0 0 0 2 0 3 4 1 0 0 1 2 1 0 0 0 0 0 16 0 1652.9713 Q03164;B4E012 Q03164 3369 3384 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 1.0895E-08 106.49 2 1 0.99229 1.0217 1.4978 2 Median 0.99229 1.0217 1.4978 2 0 Median NaN NaN NaN 0 0 Median 30381000 15795000 14586000 30381000 15795000 14586000 0 0 0 8288 1680 8477 21929;21930;21931 34402;34403;34404;34405;34406;34407;34408;34409 34404 8 LLGTQHGEGNSALSPLNPGELLIALHNIDSVK LIKLNPIVVKEVFNRLLGTQHGEGNSALSP PGELLIALHNIDSVKCDMKSIIKGEALPPH R L L V K C 2 0 3 1 0 1 2 4 2 2 7 1 0 0 2 3 1 0 0 1 0 0 32 0 3306.7572 A0A087WUE9;Q4LE61;B7Z6F7;A0A024R0R6;Q92797 A0A087WUE9 925 956 SYMPK;SYMPK variant protein Symplekin yes no 4 4.1862E-18 63.724 2 1.3616 1.4036 7.4648 2 Median 1.3616 1.4036 7.4648 2 0 Median NaN NaN NaN 0 0 Median 37791000 16006000 21786000 37791000 16006000 21786000 0 0 0 8289 56 8478 21932;21933 34410;34411 34411 2 LLGVHTQTR DHQPPQYKLDPRLARLLGVHTQTRAAIMQA DPRLARLLGVHTQTRAAIMQALWLYIKHNQ R L L T R A 0 1 0 0 0 1 0 1 1 0 2 0 0 0 0 0 2 0 0 1 0 0 9 0 1023.5825 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 245 253 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 3 0.014629 40.331 2 0.76321 0.78353 NaN 1 Median 0.76321 0.78353 NaN 1 0 Median NaN NaN NaN 0 0 Median 32111000 13662000 18449000 32111000 13662000 18449000 0 0 0 8290 1120 8479 21934;21935 34412;34413 34412 2 LLGYVATLK ATCVRLLGRNSNSKRLLGYVATLKDNFGFI NSNSKRLLGYVATLKDNFGFIETANHDKEI R L L L K D 1 0 0 0 0 0 0 1 0 0 3 1 0 0 0 0 1 0 1 1 0 0 9 0 976.59572 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 488 496 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 0.0063471 64.42 2 2.4174 2.6653 1.8106 2 Median 2.4174 2.6653 1.8106 2 0 Median NaN NaN NaN 0 0 Median 135850000 37887000 97966000 135850000 37887000 97966000 0 0 0 8291 42 8480 21936;21937 34414;34415;34416 34416 3 LLHDQVGVIQFGPYK PVDHILAGSFETAMRLLHDQVGVIQFGPYK LLHDQVGVIQFGPYKQLFLQTYARGRTTYQ R L L Y K Q 0 0 0 1 0 2 0 2 1 1 2 1 0 1 1 0 0 0 1 2 0 0 15 0 1712.925 P53621 P53621 942 956 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 0.0010698 41.967 2 2 1.8182 1.5232 15.866 4 Median 1.5802 1.651 22.908 2 0 Median 1.9461 1.5133 12.436 2 0 Median 29579000 12120000 17459000 23762000 10540000 13222000 5816600 1580100 4236500 8292 1607 8481 21938;21939;21940;21941 34417;34418;34419;34420 34417 4 LLHGSPNLR ASSTCNFVSNEVLGRLLHGSPNLRLLDLRG NEVLGRLLHGSPNLRLLDLRGCARITPAGL R L L L R L 0 1 1 0 0 0 0 1 1 0 3 0 0 0 1 1 0 0 0 0 0 0 9 0 1005.572 Q71RB6;Q8N531 Q71RB6 140 148 FBXL6 F-box/LRR-repeat protein 6 yes no 3 0.00065979 76.221 1 0.41864 0.41935 NaN 1 Median 0.41864 0.41935 NaN 1 0 Median NaN NaN NaN 0 0 Median 18610000 12185000 6425200 18610000 12185000 6425200 0 0 0 8293 1867 8482 21942 34421 34421 1 LLHIEELR DTGDAVLNEAAQILRLLHIEELRELQTKIN EAAQILRLLHIEELRELQTKINEAIVAVQA R L L L R E 0 1 0 0 0 0 2 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 1021.592 Q5RLJ0;Q549M8;Q9Y224 Q5RLJ0 206 213 C14orf166 UPF0568 protein C14orf166 yes no 3 0.0035108 62.546 2 1.1344 1.1818 NaN 1 Median 1.1344 1.1818 NaN 1 0 Median NaN NaN NaN 0 0 Median 26511000 11341000 15170000 26511000 11341000 15170000 0 0 0 8294 1793 8483 21943;21944 34422;34423;34424 34424 3 LLHINATALLEYPEYSGPLLPASAVAPGPSALDR FLGGKSQKDQNTFQKLLHINATALLEYPEY LPASAVAPGPSALDRKVTPLQKELQETLKG K L L D R K 6 1 1 1 0 0 2 2 1 1 7 0 0 0 5 3 1 0 2 1 0 0 34 0 3515.8664 D3DVL7;B4DU42;Q969Z0;B3KRS4;B3KMT3;B3KM73;H7C4R5 D3DVL7 400 433 TBRG4 Protein TBRG4 yes no 3 3.2449E-05 35.472 1 1.9799 2.1509 NaN 1 Median 1.9799 2.1509 NaN 1 0 Median NaN NaN NaN 0 0 Median 28354000 9521100 18833000 28354000 9521100 18833000 0 0 0 8295 1036 8484 21945 34425 34425 1 LLIDEAILK DALANLKVSQIKKVRLLIDEAILKCDAERI QIKKVRLLIDEAILKCDAERIKLEAERFEN R L L L K C 1 0 0 1 0 0 1 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1026.6325 Q0VGA5;Q53HA4;Q5T5C7;P49591 Q0VGA5 108 116 SARS Serine--tRNA ligase, cytoplasmic yes no 2 0.014831 58.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8296 1584 8485 21946 34426 34426 1 LLIELLR LKYWQRLRHDLERARLLIELLRKREKLKRE RHDLERARLLIELLRKREKLKREQVKVEQV R L L L R K 0 1 0 0 0 0 1 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 7 0 868.57459 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41;B7Z926;Q59G93;Q9Y4Q3 A0A024R4W4 537 543 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.037563 60.788 1 0.84925 0.84911 NaN 1 Median 0.84925 0.84911 NaN 1 0 Median NaN NaN NaN 0 0 Median 9057000 4563100 4493900 9057000 4563100 4493900 0 0 0 8297 162 8486 21947 34427;34428 34427 2 LLIHQSLAGGIIGVK EYQHYKGSDFDCELRLLIHQSLAGGIIGVK LLIHQSLAGGIIGVKGAKIKELRENTQTTI R L L V K G 1 0 0 0 0 1 0 3 1 3 3 1 0 0 0 1 0 0 0 1 0 0 15 0 1517.9293 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2 B4DUQ1 125 139 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 3 1.3287E-06 97.273 1 1.7335 1.9517 NaN 1 Median 1.7335 1.9517 NaN 1 0 Median NaN NaN NaN 0 0 Median 117630000 48954000 68675000 117630000 48954000 68675000 0 0 0 8298 102 8487 21948 34429 34429 1 LLILALER SPIPFPPLSYKHDTKLLILALERLKEAYSV SYKHDTKLLILALERLKEAYSVKSRLNQSQ K L L E R L 1 1 0 0 0 0 1 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 8 0 939.6117 Q6P2Q9;I3L0J9 Q6P2Q9 838 845 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0019394 104.37 2 2 0.85697 0.97887 15.257 4 Linear 0.85855 0.93728 5.8936 2 0 Median 0.84778 0.72464 1.2627 2 0 Median 79341000 42344000 36998000 73672000 39378000 34293000 5669500 2965400 2704100 8299 1854 8488 21949;21950;21951;21952 34430;34431;34432;34433;34434 34430 5 LLILMEAR PEMQYVKIKDVARGRLLILMEARLSALYKL KDVARGRLLILMEARLSALYKLESDYEILE R L L A R L 1 1 0 0 0 0 1 0 0 1 3 0 1 0 0 0 0 0 0 0 0 0 8 0 957.56812 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2;Q5TCD1 Q59G75 272 279 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0095194 58.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3968400 0 3968400 3968400 0 3968400 0 0 0 8300 1561 8489 21953 34435 34435 1312 1 LLINLYK DANFTVVVMMPEAKRLLINLYKLVKSQISV VMMPEAKRLLINLYKLVKSQISVYSELNKI R L L Y K L 0 0 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 1 0 0 0 7 0 875.54804 Q9H8H0;J3QKV1 Q9H8H0 670 676 NOL11 Nucleolar protein 11 yes no 2 0.026691 74.717 1 0.81193 0.90712 NaN 1 Median 0.81193 0.90712 NaN 1 0 Median NaN NaN NaN 0 0 Median 90021000 47445000 42576000 90021000 47445000 42576000 0 0 0 8301 2042 8490 21954 34436;34437;34438 34437 3 LLISHLSGIR PEKEYEGEKVSVTTRLLISHLSGIRHYEKD SVTTRLLISHLSGIRHYEKDIKKVKEEKAY R L L I R H 0 1 0 0 0 0 0 1 1 2 3 0 0 0 0 2 0 0 0 0 0 0 10 0 1107.6764 P83111;H0YNN5 P83111 212 221 LACTB Serine beta-lactamase-like protein LACTB, mitochondrial yes no 3 0.012087 49.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3931000 0 3931000 3931000 0 3931000 0 0 0 8302 1671 8491 21955 34439 34439 1 LLITGTPLQNSLK SLLYKTLIDFKSNHRLLITGTPLQNSLKEL HRLLITGTPLQNSLKELWSLLHFIMPEKFS R L L L K E 0 0 1 0 0 1 0 1 0 1 4 1 0 0 1 1 2 0 0 0 0 0 13 0 1396.829 O14646;A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 O14646 639 651 CHD1;CHD2 Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 2 no no 2 8.0557E-06 102.52 2 2 0.9053 0.79578 8.0602 4 Median 0.79944 0.86275 10.192 2 0 Median 0.97936 0.78449 0.78443 2 0 Median 103030000 57342000 45692000 78798000 44305000 34492000 24236000 13036000 11200000 8303 1366;354 8492 21956;21957;21958;21959 34440;34441;34442;34443;34444;34445;34446;34447 34443 8 LLIVSTTPYSEK SYQSPHGIPIDLLDRLLIVSTTPYSEKDTK LDRLLIVSTTPYSEKDTKQILRIRCEEEDV R L L E K D 0 0 0 0 0 0 1 0 0 1 2 1 0 0 1 2 2 0 1 1 0 0 12 0 1349.7442 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 354 365 RUVBL2 RuvB-like 2 yes no 2 2.076E-08 112.36 2 2 0.85601 0.96419 NaN 1 Median 0.85601 0.96419 NaN 1 0 Median NaN NaN NaN 0 0 Median 243750000 191320000 52432000 230110000 177680000 52432000 13645000 13645000 0 8304 2120 8493 21960;21961;21962;21963 34448;34449;34450;34451;34452 34450 5 LLLAFQK KHNSWEPEENILDPRLLLAFQKKEHEKEVQ EENILDPRLLLAFQKKEHEKEVQNRKRGKR R L L Q K K 1 0 0 0 0 1 0 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 831.52182 Q14781 Q14781 54 60 CBX2 Chromobox protein homolog 2 yes yes 2 0.022583 77.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8305 1744 8494 21964 34453 34453 1 LLLDDLVPTSR AARHGERPGGEELSRLLLDDLVPTSRLELL ELSRLLLDDLVPTSRLELLFGMTPCLLALQ R L L S R L 0 1 0 2 0 0 0 0 0 0 4 0 0 0 1 1 1 0 0 1 0 0 11 0 1240.7027 Q6IN84 Q6IN84 38 48 MRM1 rRNA methyltransferase 1, mitochondrial yes yes 2 0.00024383 90.906 2 0.35711 0.36598 43.038 2 Median 0.35711 0.36598 43.038 2 0 Median NaN NaN NaN 0 0 Median 11472000 8230200 3242300 11472000 8230200 3242300 0 0 0 8306 1844 8495 21965;21966 34454;34455;34456 34454 3 LLLDTFEYQGLVK TFQKRQKLTSEGAAKLLLDTFEYQGLVKHT AKLLLDTFEYQGLVKHTGGCHCGAVRFEVW K L L V K H 0 0 0 1 0 1 1 1 0 0 4 1 0 1 0 0 1 0 1 1 0 0 13 0 1537.8392 Q7Z7K6;A0A0M3HER2 Q7Z7K6 135 147 CENPV Centromere protein V no no 2 8.997E-19 142.83 2 2 1.4826 1.4793 2.8528 4 Median 1.2428 1.4433 0.13334 2 0 Median 1.7643 1.5164 0.15085 2 0 Median 724210000 302360000 421860000 495070000 221290000 273780000 229150000 81066000 148080000 8307 1882;541 8496 21967;21968;21969;21970 34457;34458;34459;34460;34461;34462;34463;34464;34465;34466;34467;34468;34469;34470;34471;34472 34468 16 LLLEAQAATGFLLDPVK YQALKKGLLSAEVARLLLEAQAATGFLLDP LEAQAATGFLLDPVKGERLTVDEAVRKGLV R L L V K G 3 0 0 1 0 1 1 1 0 0 5 1 0 1 1 0 1 0 0 1 0 0 17 0 1798.024 Q15149;D3DWL0;Q96IE3 Q15149 3859 3875 PLEC;PLEC1 Plectin yes no 2 6.2537E-45 164.68 3 1.672 1.7059 2.3158 2 Median 1.672 1.7059 2.3158 2 0 Median NaN NaN NaN 0 0 Median 44001000 15475000 28526000 44001000 15475000 28526000 0 0 0 8308 1754 8497 21971;21972;21973 34473;34474;34475 34473 3 LLLEEIYR GAAVLPEDLGRNCARLLLEEIYRGGCVDST LGRNCARLLLEEIYRGGCVDSTNQSLALLL R L L Y R G 0 1 0 0 0 0 2 0 0 1 3 0 0 0 0 0 0 0 1 0 0 0 8 0 1047.5964 Q9Y2P8;Q5VZU3;Q5VZU2 Q9Y2P8 282 289 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 0.0077612 88.942 2 2 1.0328 0.99144 6.4157 4 Median 0.88899 0.96584 10.169 2 0 Median 1.2084 0.99144 3.6378 2 0 Median 111150000 56043000 55103000 90112000 46810000 43302000 21034000 9232400 11801000 8309 2125 8498 21974;21975;21976;21977 34476;34477;34478;34479;34480;34481;34482 34477 7 LLLEFTDTSYEEK VLGYWDIRGLAHAIRLLLEFTDTSYEEKRY IRLLLEFTDTSYEEKRYTCGEAPDYDRSQW R L L E K R 0 0 0 1 0 0 3 0 0 0 3 1 0 1 0 1 2 0 1 0 0 0 13 0 1586.7716 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3 Q6FGJ9 23 35 GSTM3 Glutathione S-transferase Mu 3 yes no 2 9.9151E-09 115.18 2 2 2.1874 2.0407 43.732 4 Median 2.6204 2.8753 0.41969 2 0 Median 1.6842 1.3565 9.6842 2 0 Median 104310000 30745000 73564000 93876000 27120000 66756000 10434000 3625900 6808200 8310 1503 8499 21978;21979;21980;21981 34483;34484;34485;34486;34487;34488;34489;34490;34491;34492;34493;34494 34484 12 LLLENYEEYAAR IHPNPESALNEEAGRLLLENYEEYAARARL AGRLLLENYEEYAARARLLTEIHGGAGGPS R L L A R A 2 1 1 0 0 0 3 0 0 0 3 0 0 0 0 0 0 0 2 0 0 0 12 0 1482.7355 K7EPJ1;Q16763 K7EPJ1 165 176 UBE2S Ubiquitin-conjugating enzyme E2 S yes no 2 3.3627E-08 108.67 1 1 2.413 2.1231 NaN 1 Median NaN NaN NaN 0 0 Median 2.413 2.1231 NaN 1 0 Median 11435000 572880 10862000 9786500 0 9786500 1648100 572880 1075200 8311 1343 8500 21982;21983 34495;34496;34497 34495 3 LLLEQILNK LPHVFVNCVECFTLRLLLEQILNKLNHLSS ECFTLRLLLEQILNKLNHLSSSEDGCSTEI R L L N K L 0 0 1 0 0 1 1 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 9 0 1082.6699 Q9UDM8;A4D0P7;O43913;Q53FC8;A8K8C0 Q9UDM8 71 79 ORC5L;ORC5 Origin recognition complex subunit 5 yes no 2 0.0036023 71.379 3 2 1.3561 1.1319 28.193 3 Median 1.6118 1.6254 NaN 1 0 Median 1.2641 1.0275 13.683 2 0 Median 18292000 6130300 12162000 12094000 3490300 8603400 6198600 2640100 3558500 8312 657 8501 21984;21985;21986;21987;21988 34498;34499;34500;34501;34502;34503;34504;34505 34500 8 LLLETHLPSK NANAVSEGVVHEDLRLLLETHLPSKKKKVL HEDLRLLLETHLPSKKKKVLLGVGDPKIGA R L L S K K 0 0 0 0 0 0 1 0 1 0 4 1 0 0 1 1 1 0 0 0 0 0 10 0 1149.6758 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 78 87 NOP56 Nucleolar protein 56 yes no 2;3 0.00020689 93.098 4 2 0.75603 0.79496 5.181 6 Median 0.73308 0.82122 6.0261 4 0 Median 0.98318 0.79304 2.5982 2 0 Median 485350000 269520000 215820000 444970000 248550000 196410000 40378000 20970000 19408000 8313 785 8502 21989;21990;21991;21992;21993;21994 34506;34507;34508;34509;34510;34511;34512;34513;34514;34515;34516;34517;34518 34511 13 LLLFSSATDAAIR PGVVHLVAFHPDPTRLLLFSSATDAAIRVW TRLLLFSSATDAAIRVWSLQDRSCLAVLTA R L L I R V 3 1 0 1 0 0 0 0 0 1 3 0 0 1 0 2 1 0 0 0 0 0 13 0 1376.7664 A0A087WYP7;Q12788;J3KNP2 Q12788 166 178 TBL3 Transducin beta-like protein 3 no no 2 2.29E-13 128.17 2 2 1.0314 1.0904 3.7958 4 Linear 0.92813 1.066 2.4404 2 0 Median 1.1814 1.0178 3.9894 2 0 Median 327900000 160940000 166960000 259020000 129980000 129030000 68878000 30955000 37923000 8314 1698;436 8503 21995;21996;21997;21998 34519;34520;34521;34522;34523;34524;34525;34526 34522 8 LLLGAGAVAYGVR GRLPAGPRGMGTALKLLLGAGAVAYGVRES LKLLLGAGAVAYGVRESVFTVEGGHRAIFF K L L V R E 3 1 0 0 0 0 0 3 0 0 3 0 0 0 0 0 0 0 1 2 0 0 13 0 1258.7398 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6;F5H0C5;F5H2D2 J3KPX7 25 37 PHB2 Prohibitin-2 yes no 2 8.5988E-09 116.52 3 2 1.8995 1.9024 10.659 4 Median 1.495 1.7548 1.2303 2 0 Median 2.4433 2.1011 3.8573 2 0 Median 815230000 325550000 489680000 751130000 308080000 443050000 64091000 17466000 46625000 8315 1328 8504 21999;22000;22001;22002;22003 34527;34528;34529;34530;34531;34532;34533;34534;34535;34536;34537 34528 11 LLLGDLAPVR CVVGENGAGKSTMLKLLLGDLAPVRGIRHA STMLKLLLGDLAPVRGIRHAHRNLKIGYFS K L L V R G 1 1 0 1 0 0 0 1 0 0 4 0 0 0 1 0 0 0 0 1 0 0 10 0 1065.6546 B4DRU9;A0A0S2Z5L1;Q9NUQ8 B4DRU9 496 505 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 0.00024981 92.439 1 1.5281 1.5095 NaN 1 Median 1.5281 1.5095 NaN 1 0 Median NaN NaN NaN 0 0 Median 15010000 4889900 10120000 15010000 4889900 10120000 0 0 0 8316 583 8505 22004 34538 34538 1 LLLIATGK EEHGKGSLEEAEAERLLLIATGKRTLLIDE EEAEAERLLLIATGKRTLLIDELNKLKNEG R L L G K R 1 0 0 0 0 0 0 1 0 1 3 1 0 0 0 0 1 0 0 0 0 0 8 0 827.54804 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1K5 B4DSL6 639 646 ANLN Actin-binding protein anillin yes no 2 0.0087497 77.282 2 2.3002 2.4031 NaN 1 Median 2.3002 2.4031 NaN 1 0 Median NaN NaN NaN 0 0 Median 16299000 3489300 12810000 16299000 3489300 12810000 0 0 0 8317 294 8506 22005;22006 34539;34540 34540 2 LLLIDWPELK SDFIRVQLISGPPAKLLLIDWPELKESIPV GPPAKLLLIDWPELKESIPVINGRDLQNPI K L L L K E 0 0 0 1 0 0 1 0 0 1 4 1 0 0 1 0 0 1 0 0 0 0 10 0 1238.7275 A6NHR9;J3KTL8 A6NHR9 1257 1266 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.00021583 93.551 2 1.0417 1.0686 0.29384 2 Median 1.0417 1.0686 0.29384 2 0 Median NaN NaN NaN 0 0 Median 21941000 10280000 11661000 21941000 10280000 11661000 0 0 0 8318 684 8507 22007;22008 34541;34542;34543;34544 34542 4 LLLIGDSGVGK ______________________________ YLFKLLLIGDSGVGKSCLLLRFADDTYTES K L L G K S 0 0 0 1 0 0 0 3 0 1 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1070.6336 P61026;Q53SX4;H0YLJ8;H0YL94;G5ELZ6;G5ELZ5;G5EMR8;P59190;E9PLD0;Q9H0U4;B7Z8M7;Q6FIG4;Q5U0I6;P62820;Q9H1C9;B3KTE3;H0YMN7;Q59EP4;E7END7;H0YNE9;B4DMS1;Q92928;Q92930;A0A024R7I3;P61006;A0A024RB27;Q504R6;P51153;D3DV69 E9PLD0 11 21 RAB10;RAB8B;RAB15;RAB1B;RAB1A;RAB1C;RAB8A;hCG_24991;RAB13;hCG_1996054 Ras-related protein Rab-10;Ras-related protein Rab-15;Ras-related protein Rab-1B;Ras-related protein Rab-1A;Putative Ras-related protein Rab-1C;Ras-related protein Rab-8B;Ras-related protein Rab-8A;Ras-related protein Rab-13 no no 2 7.3675E-08 113.66 2 2 1.3519 1.318 46.882 4 Median 1.6775 1.9779 1.753 2 0 Median 1.0913 0.87844 1.7214 2 0 Median 878030000 331590000 546440000 856920000 321610000 535310000 21112000 9980500 11131000 8319 1246;226;1627;322 8508 22009;22010;22011;22012 34545;34546;34547;34548;34549;34550;34551;34552 34548 8 LLLIPQGAILR LYLTTNSKNPSGKGKLLLIPQGAILRATNN GKGKLLLIPQGAILRATNNANLQSGSAASG K L L L R A 1 1 0 0 0 1 0 1 0 2 4 0 0 0 1 0 0 0 0 0 0 0 11 0 1205.786 Q9ULM3 Q9ULM3 774 784 YEATS2 YEATS domain-containing protein 2 yes yes 2 0.0019524 63.565 1 1 0.80264 0.83477 NaN 1 Median 0.80264 0.83477 NaN 1 0 Median NaN NaN NaN 0 0 Median 5934300 3884600 2049700 5397900 3884600 1513200 536460 0 536460 8320 2110 8509 22013;22014 34553;34554 34553 2 LLLIQAFRPDR SEETPATPIGQAIHRLLLIQAFRPDRLLAM AIHRLLLIQAFRPDRLLAMAHMFVSTNLGE R L L D R L 1 2 0 1 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 11 1 1340.7929 Q14204 Q14204 3990 4000 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.031042 32.329 1 1.3147 1.4181 NaN 1 Median 1.3147 1.4181 NaN 1 0 Median NaN NaN NaN 0 0 Median 17271000 3836200 13435000 17271000 3836200 13435000 0 0 0 8321 1729 8510 22015 34555 34555 1 LLLLDTQQEAGMLLR KKLSKAVEKRFPHDKLLLLDTQQEAGMLLR LLLLDTQQEAGMLLRQLANQKQQHLAFRDR K L L L R Q 1 1 0 1 0 2 1 1 0 0 6 0 1 0 0 0 1 0 0 0 0 0 15 0 1712.9495 Q2NL82;I3L1Q5 Q2NL82 220 234 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 2 2.1046E-16 125.22 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17297000 0 17297000 17297000 0 17297000 0 0 0 8322 1776 8511 22016;22017 34556;34557 34557 1648 2 LLLLESVSGLLQPR ______________________________ RLLLLESVSGLLQPRTGSAVAPVHPPNRSA R L L P R T 0 1 0 0 0 1 1 1 0 0 6 0 0 0 1 2 0 0 0 1 0 0 14 0 1536.9239 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;I3L445;I3L1P4;I3L4M7 O15451 4 17 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 2.4912E-09 116.23 2 1.0787 1.0911 0.647 2 Median 1.0787 1.0911 0.647 2 0 Median NaN NaN NaN 0 0 Median 14815000 6171900 8643000 14815000 6171900 8643000 0 0 0 8323 746 8512 22018;22019 34558;34559 34559 2 LLLLGAGESGK KQLQKDKQVYRATHRLLLLGAGESGKSTIV ATHRLLLLGAGESGKSTIVKQMRILHVNGF R L L G K S 1 0 0 0 0 0 1 3 0 0 4 1 0 0 0 1 0 0 0 0 0 0 11 0 1056.6179 Q5FWY2;A0A0S2Z3S5;A0A0S2Z3H8;P63092;Q5JWF2;Q5JWE9;H0Y7F4;A0A087WTB6;A2A2R6;Q5JWD1;H0Y7E8;A0A087WZE5;A0A024R2Z1;Q8N2B4;Q5T697;A8K1Y9;P11488;P19087;A8MTJ3;P38405;P08754;A0A142CHG9;P63096;P04899;Q93020;B3KP89;P09471 Q5FWY2 43 53 GNAS;GNAO1;GNAT2;GNAT1;GNAL;GNAT3;GNAI3;GNAI1;GNAI2;WUGSC:H_LUCA16.1 Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha no no 2 0.00036511 84.213 2 2 1.6578 1.729 34.413 3 Median 1.6868 1.7821 4.2741 2 0 Median 1.2012 0.98416 NaN 1 0 Median 70385000 25011000 45374000 66503000 23881000 42622000 3882700 1130400 2752400 8324 549;1458 8513 22020;22021;22022;22023 34560;34561;34562;34563;34564 34560 5 LLLLQK NGMYDGSALIRASGKLLLLQKMLKNLKEGG SALIRASGKLLLLQKMLKNLKEGGHRVLIF K L L Q K M 0 0 0 0 0 1 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 6 0 726.50036 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;O75052 F5GWX5 1045 1050 CHD4;NOS1AP Chromodomain-helicase-DNA-binding protein 4;Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein yes no 2 0.034273 112.58 1 1 1.1374 1.0939 38.02 2 Median 0.74371 0.83602 NaN 1 0 Median 1.7395 1.4313 NaN 1 0 Median 80623000 43700000 36923000 70358000 40573000 29785000 10266000 3127200 7138400 8325 515 8514 22024;22025 34565;34566 34565 2 LLLNLISQVGR WIPQLLTCLVGSEGKLLLNLISQVGRVYPQ SEGKLLLNLISQVGRVYPQAVYFPIRTLYL K L L G R V 0 1 1 0 0 1 0 1 0 1 4 0 0 0 0 1 0 0 0 1 0 0 11 0 1224.7554 F2Z2U4;Q59FH1;H0Y4W2;Q9Y4A5 F2Z2U4 3220 3230 TRRAP Transformation/transcription domain-associated protein yes no 2 3.1676E-06 98.249 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8326 1253 8515 22026;22027 34567;34568 34568 2 LLLNNDNLLR HAPPGEFNEVFNDVRLLLNNDNLLRDGAAH FNDVRLLLNNDNLLRDGAAHAFAQYNMDQF R L L L R D 0 1 3 1 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 10 0 1196.6877 A8K0T9;A0A024R0E5;P52907;Q53GE2;Q53GC7;A4D0V4;P47755;C9JUG7;F8W9N7;A0A0D9SET8 A8K0T9 38 47 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 2 2.4826E-06 110.87 1 1.1853 1.3685 NaN 1 Median 1.1853 1.3685 NaN 1 0 Median NaN NaN NaN 0 0 Median 55557000 24226000 31331000 55557000 24226000 31331000 0 0 0 8327 43;659 8516 22028 34569 34569 1 LLLPGELAK KRSTITSREIQTAVRLLLPGELAKHAVSEG IQTAVRLLLPGELAKHAVSEGTKAVTKYTS R L L A K H 1 0 0 0 0 0 1 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 9 0 952.59572 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;A0A024RCL8;B4DR52;P57053;O60814;Q0D2M2;L0R4T3;Q16778;P33778;P23527;A0A024RCJ2;P06899;Q8N257 B2R4S9 101 109 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;ABCF2;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2 0.0001488 95.741 125 6 0.82966 0.94906 11.147 55 Plateau 0.82891 0.97401 9.28 52 0 Plateau 0.84089 0.66539 4.7238 3 0 Median 51685000000 45544000000 6140300000 47303000000 41175000000 6128300000 4381400000 4369400000 12002000 8328 34;1513 8517 22029;22030;22031;22032;22033;22034;22035;22036;22037;22038;22039;22040;22041;22042;22043;22044;22045;22046;22047;22048;22049;22050;22051;22052;22053;22054;22055;22056;22057;22058;22059;22060;22061;22062;22063;22064;22065;22066;22067;22068;22069;22070;22071;22072;22073;22074;22075;22076;22077;22078;22079;22080;22081;22082;22083;22084;22085;22086;22087;22088;22089;22090;22091;22092;22093;22094;22095;22096;22097;22098;22099;22100;22101;22102;22103;22104;22105;22106;22107;22108;22109;22110;22111;22112;22113;22114;22115;22116;22117;22118;22119;22120;22121;22122;22123;22124;22125;22126;22127;22128;22129;22130;22131;22132;22133;22134;22135;22136;22137;22138;22139;22140;22141;22142;22143;22144;22145;22146;22147;22148;22149;22150;22151;22152;22153;22154;22155;22156;22157;22158;22159 34570;34571;34572;34573;34574;34575;34576;34577;34578;34579;34580;34581;34582;34583;34584;34585;34586;34587;34588;34589;34590;34591;34592;34593;34594;34595;34596;34597;34598;34599;34600;34601;34602;34603;34604;34605;34606;34607;34608;34609;34610;34611;34612;34613;34614;34615;34616;34617;34618;34619;34620;34621;34622;34623;34624;34625;34626;34627;34628;34629;34630;34631;34632;34633;34634;34635;34636;34637;34638;34639;34640;34641;34642;34643;34644;34645;34646;34647;34648;34649;34650;34651;34652;34653;34654;34655;34656;34657;34658;34659;34660;34661;34662;34663;34664;34665;34666;34667;34668;34669;34670;34671;34672;34673;34674;34675;34676;34677;34678;34679;34680;34681;34682;34683;34684;34685;34686;34687;34688;34689;34690;34691;34692;34693;34694;34695;34696;34697;34698;34699;34700;34701;34702;34703;34704;34705;34706;34707;34708;34709;34710;34711;34712;34713;34714;34715;34716;34717;34718;34719;34720;34721;34722;34723;34724;34725;34726;34727;34728;34729;34730;34731;34732;34733;34734;34735;34736;34737;34738;34739;34740;34741;34742;34743;34744;34745;34746;34747;34748;34749;34750;34751;34752;34753;34754;34755;34756;34757;34758;34759;34760;34761;34762;34763;34764;34765;34766;34767;34768;34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779;34780;34781;34782;34783;34784;34785;34786;34787;34788;34789;34790;34791;34792;34793;34794;34795;34796;34797;34798;34799;34800;34801;34802;34803;34804;34805;34806;34807;34808 34805 239 LLLPGELAKHAVSEGTK KRSTITSREIQTAVRLLLPGELAKHAVSEG LPGELAKHAVSEGTKAVTKYTSSK______ R L L T K A 2 0 0 0 0 0 2 2 1 0 4 2 0 0 1 1 1 0 0 1 0 0 17 1 1761.9989 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;A0A024RCL8;B4DR52;P57053;O60814;L0R4T3;Q16778;P33778;P23527;A0A024RCJ2;P06899;Q8N257 B2R4S9 101 117 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;ABCF2;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 4 0.041661 14.793 1 0.84069 0.99538 NaN 1 Median 0.84069 0.99538 NaN 1 0 Median NaN NaN NaN 0 0 Median 29597000 18396000 11202000 29597000 18396000 11202000 0 0 0 8329 34;1513 8518 22160 34809 34809 1 LLLPGVIK SAGDGFHGDVYLTVKLLLPGVIKTVYNLND DVYLTVKLLLPGVIKTVYNLNDKQIVKLFS K L L I K T 0 0 0 0 0 0 0 1 0 1 3 1 0 0 1 0 0 0 0 1 0 0 8 0 851.58443 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 309 316 LIG3 DNA ligase 3;DNA ligase yes no 2 0.031924 50.966 2 0.56709 0.57095 7.1327 2 Median 0.56709 0.57095 7.1327 2 0 Median NaN NaN NaN 0 0 Median 47988000 27778000 20210000 47988000 27778000 20210000 0 0 0 8330 1589 8519 22161;22162 34810;34811 34811 2 LLLPVAEYFSGVQLPPHLSPFVTEK CYVQPQWVFDSVNARLLLPVAEYFSGVQLP GVQLPPHLSPFVTEKEGDYVPPEKLKLLAL R L L E K E 1 0 0 0 0 1 2 1 1 0 5 1 0 2 4 2 1 0 1 3 0 0 25 0 2780.5153 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;Q6ZUE0;H7C267 B5MCF9 389 413 PES1 Pescadillo homolog yes no 3 1.394E-36 134.56 2 1 0.9083 1.0246 8.742 3 Median 0.88853 1.0504 3.5194 2 0 Median 1.0745 0.90848 NaN 1 0 Median 1189000000 633100000 555890000 1130600000 605780000 524860000 58353000 27317000 31036000 8331 886 8520 22163;22164;22165 34812;34813;34814;34815;34816;34817;34818 34816 7 LLLPWLEAR TDELVAEVEKRNRLKLLLPWLEARIHEGCE KRNRLKLLLPWLEARIHEGCEEPATHNALA K L L A R I 1 1 0 0 0 0 1 0 0 0 4 0 0 0 1 0 0 1 0 0 0 0 9 0 1109.6597 A0A087WVQ6;Q00610 A0A087WVQ6 861 869 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.0074258 68.224 3 2.1448 2.1881 NaN 1 Median 2.1448 2.1881 NaN 1 0 Median NaN NaN NaN 0 0 Median 7562400 1116600 6445800 7562400 1116600 6445800 0 0 0 8332 419 8521 22166;22167;22168 34819;34820;34821 34821 3 LLLQGEADQSLLTFIDK YQETYLPYMIRSKLKLLLQGEADQSLLTFI LQGEADQSLLTFIDKAMHGELQKAILELHY K L L D K A 1 0 0 2 0 2 1 1 0 1 5 1 0 1 0 1 1 0 0 0 0 0 17 0 1903.0302 P78527 P78527 3051 3067 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.1853E-12 117.93 2 0.6467 0.72666 6.2972 2 Median 0.6467 0.72666 6.2972 2 0 Median NaN NaN NaN 0 0 Median 187540000 109540000 77995000 187540000 109540000 77995000 0 0 0 8333 1665 8522 22169;22170 34822;34823;34824;34825;34826 34822 5 LLLQHAPLR RVGPEELPVVGQLLRLLLQHAPLRTHMLTN VGQLLRLLLQHAPLRTHMLTNAILVQQIIK R L L L R T 1 1 0 0 0 1 0 0 1 0 4 0 0 0 1 0 0 0 0 0 0 0 9 0 1059.6553 A0A024R169;Q9NXF1;B4DQR0 A0A024R169 866 874 TEX10 Testis-expressed sequence 10 protein yes no 3 0.033486 29.473 2 0.72624 0.72213 NaN 1 Median 0.72624 0.72213 NaN 1 0 Median NaN NaN NaN 0 0 Median 11773000 8672900 3100400 11773000 8672900 3100400 0 0 0 8334 72 8523 22171;22172 34827;34828 34828 2 LLLSATSGEK LHNLPKAVDDKQLRKLLLSATSGEKGVRIK KQLRKLLLSATSGEKGVRIKECRVMRDLKG K L L E K G 1 0 0 0 0 0 1 1 0 0 3 1 0 0 0 2 1 0 0 0 0 0 10 0 1017.5706 A0A024R753;Q9NW13 A0A024R753 506 515 RBM28 RNA-binding protein 28 yes no 2 0.00035656 88.948 2 2 1.0632 1.011 2.964 4 Median 0.92665 1.0398 0.91159 2 0 Median 1.2202 0.98859 0.1073 2 0 Median 197790000 101420000 96373000 181350000 93682000 87668000 16438000 7732900 8704600 8335 214 8524 22173;22174;22175;22176 34829;34830;34831;34832;34833;34834;34835;34836 34830 8 LLLTTQFPFK QSLSCKEHLTTVLDKLLLTTQFPFKINEKV TVLDKLLLTTQFPFKINEKVLQVLTNIFLY K L L F K I 0 0 0 0 0 1 0 0 0 0 3 1 0 2 1 0 2 0 0 0 0 0 10 0 1206.7012 B4E014;Q9UBD5;B7Z8A5;B7ZAI3;Q6IBJ0;B4DZ51 B4E014 230 239 ORC3;ORC3L Origin recognition complex subunit 3 yes no 2 0.013042 49.813 1 1.4377 1.152 NaN 1 Median NaN NaN NaN 0 0 Median 1.4377 1.152 NaN 1 0 Median 2449800 958410 1491400 0 0 0 2449800 958410 1491400 8336 1058 8525 22177 34837 34837 1 LLMLHGQK EVSRHLEFYLLWTHKLLMLHGQKLKSRAGT YLLWTHKLLMLHGQKLKSRAGTLLPVIQFL K L L Q K L 0 0 0 0 0 1 0 1 1 0 3 1 1 0 0 0 0 0 0 0 0 0 8 0 938.53716 Q15269;A0A0B4J2E5;A0A096LPI6 Q15269 826 833 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.0039009 80.294 2 1.4467 1.5686 1.1778 2 Median 1.4467 1.5686 1.1778 2 0 Median NaN NaN NaN 0 0 Median 74467000 29632000 44835000 74467000 29632000 44835000 0 0 0 8337 1756 8526 22178;22179 34838;34839 34838 1626 2 LLMMAGIDDCYTSAR APRGTGIVSAPVPKKLLMMAGIDDCYTSAR LLMMAGIDDCYTSARGCTATLGNFAKATFD K L L A R G 2 1 0 2 1 0 0 1 0 1 2 0 2 0 0 1 1 0 1 0 0 0 15 0 1715.7681 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PQD7;I3L404;E9PM36;Q9BSW5;O60249 P15880 213 227 RPS2;rps2 40S ribosomal protein S2 yes no 2 1.2847E-10 122.51 2 1 2.1842 2.4354 84.267 3 Plateau 2.1651 2.4497 0.82411 2 0 Median 0.67839 0.56918 NaN 1 0 Median 167690000 50985000 116710000 163520000 48612000 114910000 4175400 2372400 1803000 8338 1485 8527;8528 22180;22181;22182 34840;34841;34842;34843;34844 34840 1245;1246 5 LLMSDIVFMR LRAPEGAFRASFEDKLLMSDIVFMRTWYPV SFEDKLLMSDIVFMRTWYPVSIPAFYNPVT K L L M R T 0 1 0 1 0 0 0 0 0 1 2 0 2 1 0 1 0 0 0 1 0 0 10 0 1223.6406 Q14692 Q14692 1090 1099 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 2.6333E-06 104.44 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30686000 0 30686000 30686000 0 30686000 0 0 0 8339 1742 8529 22183;22184 34845;34846;34847 34846 1589;1590 3 LLMSEDYFTQAMEVK QNIVFNAETYSNLIKLLMSEDYFTQAMEVK LLMSEDYFTQAMEVKAFAETHIKGFTLNDA K L L V K A 1 0 0 1 0 1 2 0 0 0 2 1 2 1 0 1 1 0 1 1 0 0 15 0 1803.8423 E5KNY5;P42704;B4DSR0 E5KNY5 1076 1090 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.01623 43.68 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8340 1207 8530 22185 34848 34848 922;923 1 LLNAFIVAEK PLYKFSYSNLKEYSRLLNAFIVAEKQKGLA KEYSRLLNAFIVAEKQKGLAVEVGEDFNIK R L L E K Q 2 0 1 0 0 0 1 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1116.6543 A0A024R932;Q8N0S6 A0A024R932 94 103 C1orf155;CENPL Centromere protein L yes no 2 0.010494 62.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6038300 6038300 0 6038300 6038300 0 0 0 0 8341 269 8531 22186 34849 34849 1 LLNETLGEVGSPGLLFYSLR SRPEAFQPHHRELLRLLNETLGEVGSPGLL LGEVGSPGLLFYSLRTLTTMAPYLSTEDVP R L L L R T 0 1 1 0 0 0 2 3 0 0 6 0 0 1 1 2 1 0 1 1 0 0 20 0 2177.1732 H0YN14;D3DS63;B3KTB3;B3KT38;B3KPS9;Q59FI4;Q8TEX9 H0YN14 163 182 IPO4 Importin-4 yes no 2 0.0055046 27.969 1 1.1757 1.1727 NaN 1 Median 1.1757 1.1727 NaN 1 0 Median NaN NaN NaN 0 0 Median 8963700 3953900 5009800 8963700 3953900 5009800 0 0 0 8342 923 8532 22187 34850 34850 1 LLNFLMK ATPTGVPKDEVLANRLLNFLMKHVFHPKRA KDEVLANRLLNFLMKHVFHPKRAVFRHNLE R L L M K H 0 0 1 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 7 0 877.50955 P78527 P78527 2215 2221 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0098124 71.359 2 1.2477 1.406 NaN 1 Median 1.2477 1.406 NaN 1 0 Median NaN NaN NaN 0 0 Median 93796000 54870000 38926000 93796000 54870000 38926000 0 0 0 8343 1665 8533 22188;22189 34851;34852 34851 1452 2 LLNGESFNTK L L T K 0 0 2 0 0 0 1 1 0 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1121.5717 REV__F8VWK7 yes no 2 0.0032547 77.282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15129000 0 15129000 15129000 0 15129000 0 0 0 + 8344 2176 8534 22190 34853 34853 1 LLNILDPK EIILFTASKKVYADKLLNILDPKKQLVRHR KKVYADKLLNILDPKKQLVRHRLFREHCVC K L L P K K 0 0 1 1 0 0 0 0 0 1 3 1 0 0 1 0 0 0 0 0 0 0 8 0 924.56442 A0A024R5Q8;Q05D32 A0A024R5Q8 359 366 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.009998 73.248 2 1 0.95009 0.9678 20.165 3 Median 0.92434 0.93295 5.1854 2 0 Median 1.6228 1.3153 NaN 1 0 Median 46295000 20995000 25300000 43604000 20033000 23571000 2690600 961330 1729300 8345 187 8535 22191;22192;22193 34854;34855;34856;34857 34854 4 LLNILMQLR DIDILNSAGKMDKMRLLNILMQLRKCCNHP KMDKMRLLNILMQLRKCCNHPYLFDGAEPG R L L L R K 0 1 1 0 0 1 0 0 0 1 4 0 1 0 0 0 0 0 0 0 0 0 9 0 1112.674 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;Q4W5H1;D7EZH4 O60264 446 454 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 3.8668E-06 129.4 4 6 3.6687 3.4561 29.243 5 Median 3.447 3.7543 11.706 2 0 Median 4.0792 3.4289 38.653 3 0 Median 112130000 25378000 86752000 89133000 21872000 67261000 22997000 3505700 19491000 8346 1391 8536;8537 22194;22195;22196;22197;22198;22199;22200;22201;22202;22203 34858;34859;34860;34861;34862;34863;34864;34865;34866;34867;34868;34869;34870 34859 1065 13 LLNLGR GLYVVNMFDTHQAARLLNLGRHSLDHLLKL MFDTHQAARLLNLGRHSLDHLLKLYCNVDS R L L G R H 0 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 684.42826 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 395 400 EXOSC10 Exosome component 10 yes no 2 0.035252 116.12 1 0.82383 0.89079 NaN 1 Median 0.82383 0.89079 NaN 1 0 Median NaN NaN NaN 0 0 Median 26940000 11767000 15173000 26940000 11767000 15173000 0 0 0 8347 1676 8538 22204 34871 34871 1 LLNNAFEELVAFQR NVNDLRRKNEKRANRLLNNAFEELVAFQRA RLLNNAFEELVAFQRALKDFVASIDATYAK R L L Q R A 2 1 2 0 0 1 2 0 0 0 3 0 0 2 0 0 0 0 0 1 0 0 14 0 1662.873 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69 Q53HJ4 65 78 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 1.441E-09 138.71 2 1 1.1727 1.2762 61.128 3 Plateau 1.1632 1.2314 5.0618 2 0 Median 0.51706 0.42791 NaN 1 0 Median 64946000 33257000 31689000 53679000 27005000 26675000 11267000 6252400 5014500 8348 568 8539 22205;22206;22207 34872;34873;34874;34875;34876;34877;34878 34872 6 LLNPLVSK ENPDFQVDEESEEFRLLNPLVSKISEKRKK EESEEFRLLNPLVSKISEKRKKKLRLLEQQ R L L S K I 0 0 1 0 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 1 0 0 8 0 882.55385 Q9BSC4;B4DS83 Q9BSC4 505 512 NOL10 Nucleolar protein 10 yes no 2 0.023225 56.659 2 2 1.5377 1.2639 6.1537 3 Median 1.0269 1.1499 NaN 1 0 Median 1.5935 1.2772 1.4798 2 0 Median 159190000 104590000 54594000 133190000 94214000 38980000 25994000 10380000 15614000 8349 2000 8540 22208;22209;22210;22211 34879;34880;34881;34882;34883 34880 5 LLNPSATR KQGELPREVRRAQARLLNPSATRAKPGPQD VRRAQARLLNPSATRAKPGPQDTVERPFYD R L L T R A 1 1 1 0 0 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 8 0 870.49232 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4E013;M0QZ34;M0QX73 Q7L4X7 168 175 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.0065363 86.833 2 1 1.1723 1.3026 12.781 3 Plateau 1.1457 1.2781 7.383 2 0 Median 1.1811 1.0443 NaN 1 0 Median 131720000 58062000 73654000 127810000 56045000 71768000 3903200 2017600 1885500 8350 1068 8541 22212;22213;22214 34884;34885;34886;34887;34888 34886 5 LLNQENIESELNSLR TLDTLSEIEWNPATKLLNQENIESELNSLR LLNQENIESELNSLRADYDNLVLDYEQLRT K L L L R A 0 1 3 0 0 1 3 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 15 0 1770.9112 A0A087X0P0;Q02224;D6RBW0 A0A087X0P0 490 504 CENPE Kinesin-like protein;Centromere-associated protein E yes no 2 0.0084689 35.677 1 1.6671 1.3894 NaN 1 Median NaN NaN NaN 0 0 Median 1.6671 1.3894 NaN 1 0 Median 6816400 2318800 4497600 0 0 0 6816400 2318800 4497600 8351 445 8542 22215 34889;34890 34890 2 LLNTFLER QSIYGGRVDNEFDQRLLNTFLERLFTTRSF DNEFDQRLLNTFLERLFTTRSFDSEFKLAC R L L E R L 0 1 1 0 0 0 1 0 0 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 1004.5655 Q14204 Q14204 4264 4271 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0084049 78.77 1 1.9066 2.0046 NaN 1 Median 1.9066 2.0046 NaN 1 0 Median NaN NaN NaN 0 0 Median 11442000 4703200 6738900 11442000 4703200 6738900 0 0 0 8352 1729 8543 22216 34891 34891 1 LLNTVEETTK ALESTEEKLHDAASKLLNTVEETTKDVSGL DAASKLLNTVEETTKDVSGLHSKLDRKKAV K L L T K D 0 0 1 0 0 0 2 0 0 0 2 1 0 0 0 0 3 0 0 1 0 0 10 0 1146.6132 P52732;B2RAM6 P52732 499 508 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 1.2241E-05 103.55 1 2.5392 2.5788 NaN 1 Median 2.5392 2.5788 NaN 1 0 Median NaN NaN NaN 0 0 Median 29947000 8380500 21567000 29947000 8380500 21567000 0 0 0 8353 1602 8544 22217 34892 34892 1 LLNTWTNR ISKQGNLSSQVPLKRLLNTWTNRYPDAKMD SQVPLKRLLNTWTNRYPDAKMDPMNIWDDI R L L N R Y 0 1 2 0 0 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 8 0 1016.5403 P78527 P78527 3160 3167 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.011754 69.198 2 1 0.53012 0.54191 7.1064 2 Median 0.53012 0.54191 7.1064 2 0 Median NaN NaN NaN 0 0 Median 33307000 21093000 12214000 32000000 19786000 12214000 1307100 1307100 0 8354 1665 8545 22218;22219;22220 34893;34894;34895;34896 34894 4 LLNVEVPQK PAASGRIICHSYLERLLNVEVPQKVGSEQK HSYLERLLNVEVPQKVGSEQKEPPEEAEPV R L L Q K V 0 0 1 0 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 9 0 1038.6073 Q9NQS7;B3KPD3 Q9NQS7 362 370 INCENP Inner centromere protein yes no 2 0.00017767 107.29 2 2 1.4171 1.4243 16.642 4 Median 1.0455 1.2386 0.70435 2 0 Median 1.9377 1.6513 1.8595 2 0 Median 1522800000 732780000 790030000 1381900000 684610000 697250000 140950000 48170000 92776000 8355 2059 8546 22221;22222;22223;22224 34897;34898;34899;34900;34901;34902;34903;34904;34905 34901 9 LLNVWQVR GITGLYFLSGAVHDRLLNVWQVRSENKEKS SGAVHDRLLNVWQVRSENKEKSAVMSFTVT R L L V R S 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 1 0 2 0 0 8 0 1026.5974 Q15061;C9IZK7 Q15061 245 252 WDR43 WD repeat-containing protein 43 yes no 2 0.0023307 100.74 2 1 1.1576 1.3164 5.5022 2 Median 1.1576 1.3164 5.5022 2 0 Median NaN NaN NaN 0 0 Median 140160000 65481000 74683000 133380000 65481000 67899000 6784000 0 6784000 8356 1752 8547 22225;22226;22227 34906;34907;34908;34909;34910 34909 5 LLPAELPAK QQPVGIRLLEEALLRLLPAELPAKRVRGKA EEALLRLLPAELPAKRVRGKARLPPDVLRW R L L A K R 2 0 0 0 0 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 0 0 9 0 950.58007 P78527 P78527 2900 2908 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0056953 66.073 2 2 0.49893 0.4771 54.956 4 Median 0.67524 0.75872 0.77831 2 0 Median 0.36365 0.29314 4.0514 2 0 Median 162190000 98858000 63333000 145520000 86806000 58710000 16674000 12052000 4622400 8357 1665 8548 22228;22229;22230;22231 34911;34912;34913;34914;34915 34911 5 LLPDITLLEPVEGEAAEELSR KDHAKFSPVATASYRLLPDITLLEPVEGEA LLEPVEGEAAEELSRCFSPGVIEVQEVQGK R L L S R C 2 1 0 1 0 0 5 1 0 1 5 0 0 0 2 1 1 0 0 1 0 0 21 0 2293.2053 Q96HT3;O15160 Q96HT3 227 247 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 4.534E-30 124.16 3 1.2044 1.3156 NaN 1 Median 1.2044 1.3156 NaN 1 0 Median NaN NaN NaN 0 0 Median 66602000 28738000 37864000 66602000 28738000 37864000 0 0 0 8358 1376 8549 22232;22233;22234 34916;34917;34918;34919;34920 34916 5 LLPDTILEK RKRREELFIEQKKRKLLPDTILEKLTTASQ EQKKRKLLPDTILEKLTTASQTNIKKSPGK K L L E K L 0 0 0 1 0 0 1 0 0 1 3 1 0 0 1 0 1 0 0 0 0 0 9 0 1040.6118 A0A024QZW2;Q9UMY1;H7C2B1 A0A024QZW2 113 121 NOL7 Nucleolar protein 7 yes no 2 0.021253 49.536 2 0.93767 0.74841 9.4501 2 Median NaN NaN NaN 0 0 Median 0.93767 0.74841 9.4501 2 0 Median 28748000 14374000 14374000 0 0 0 28748000 14374000 14374000 8359 30 8550 22235;22236 34921;34922;34923 34922 3 LLPDTINSINLDR KFSELVMKCLWRMVRLLPDTINSINLDRIL VRLLPDTINSINLDRILLDIHIFMKVFPKE R L L D R I 0 1 2 2 0 0 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 13 0 1482.8042 Q14008;Q8IYN5 Q14008 1719 1731 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.00092989 72.006 2 1 1.1065 1.0902 14.534 3 Median 1.0592 1.0559 4.5203 2 0 Median 1.5275 1.3498 NaN 1 0 Median 31164000 16281000 14883000 28728000 15258000 13470000 2435900 1022800 1413100 8360 1725 8551 22237;22238;22239 34924;34925;34926;34927 34925 4 LLPEEDLDVK HEIMSLKDLPSDPERLLPEEDLDVKTSEDQ SDPERLLPEEDLDVKTSEDQQTACGTIYSQ R L L V K T 0 0 0 2 0 0 2 0 0 0 3 1 0 0 1 0 0 0 0 1 0 0 10 0 1169.618 O60566 O60566 638 647 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.027928 43.635 2 0.59499 0.61174 17.303 2 Median 0.59499 0.61174 17.303 2 0 Median NaN NaN NaN 0 0 Median 43613000 26946000 16666000 43613000 26946000 16666000 0 0 0 8361 1396 8552 22240;22241 34928;34929 34928 2 LLPELLQPYTER QLVVGVADKDLLKSKLLPELLQPYTERVEH KSKLLPELLQPYTERVEHLSEFLVDIKPSL K L L E R V 0 1 0 0 0 1 2 0 0 0 4 0 0 0 2 0 1 0 1 0 0 0 12 0 1470.8082 Q13057 Q13057 236 247 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes yes 2 0.0017796 74.162 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10673000 10673000 0 10673000 10673000 0 0 0 0 8362 1704 8553 22242 34930 34930 1 LLPGHPR TLPGLKEDSQILKIRLLPGHPRRLKVKPDS DSQILKIRLLPGHPRRLKVKPDSEILVIEN R L L P R R 0 1 0 0 0 0 0 1 1 0 2 0 0 0 2 0 0 0 0 0 0 0 7 0 788.46571 A6NHR9;J3KTL8 A6NHR9 922 928 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.025889 88.627 2 1.1822 1.2359 25.297 2 Median 1.1822 1.2359 25.297 2 0 Median NaN NaN NaN 0 0 Median 56307000 27409000 28899000 56307000 27409000 28899000 0 0 0 8363 684 8554 22243;22244 34931;34932 34932 2 LLPGPENHR NLLGLLSRPSVCPPRLLPGPENHRAGSNED SVCPPRLLPGPENHRAGSNEDPILAPSGTP R L L H R A 0 1 1 0 0 0 1 1 1 0 2 0 0 0 2 0 0 0 0 0 0 0 9 0 1031.5512 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;E7EV54;B4DEX7 O15451 605 613 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 3 0.015203 38.276 1 1.1136 1.1229 NaN 1 Median 1.1136 1.1229 NaN 1 0 Median NaN NaN NaN 0 0 Median 9399100 4324500 5074600 9399100 4324500 5074600 0 0 0 8364 746 8555 22245 34933;34934 34934 2 LLPGYYMNLNQNPR IIKTVQHKEAEFLQKLLPGYYMNLNQNPRT KLLPGYYMNLNQNPRTLLPKFYGLYCVQAG K L L P R T 0 1 3 0 0 1 0 1 0 0 3 0 1 0 2 0 0 0 2 0 0 0 14 0 1691.8454 A6PW57;Q99755;Q7KYT4;B4DVZ9;O14986;O60331 A6PW57 195 208 PIP5K1A;STM7;PIP5K1B;PIP5K1C Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Phosphatidylinositol 4-phosphate 5-kinase type-1 beta;Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma yes no 2 0.0073555 46.606 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8365 692 8556 22246 34935 34935 533 1 LLPHQLYGVVPQA FVRPRWIYSCNEKQKLLPHQLYGVVPQA__ QKLLPHQLYGVVPQA_______________ K L L Q A - 1 0 0 0 0 2 0 1 1 0 3 0 0 0 2 0 0 0 1 2 0 0 13 0 1433.8031 F5H8D7;A0A024R0S8;Q59HH7;B4DTD3;P18887;B2RCY5 F5H8D7 590 602 XRCC1 DNA repair protein XRCC1 yes no 2 0.0016336 74.464 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35973000 0 0 30142000 0 0 5830400 0 0 8366 58 8557 22247;22248;22249 34936;34937;34938 34936 3 LLPLEEHYR IRTVTSALKELYRTKLLPLEEHYRFGAFHS ELYRTKLLPLEEHYRFGAFHSPALEDADFD K L L Y R F 0 1 0 0 0 0 2 0 1 0 3 0 0 0 1 0 0 0 1 0 0 0 9 0 1168.6241 A0A024R0S6;Q9NZN4;Q8NCJ3;B4DLA1;C9JIJ3;C9IZH1;B2R5U3;A0A024R571;Q9H4M9;C9JC03;B4DZH9;Q9NZN3 A0A024R0S6 33 41 EHD2;EHD1;EHD3 EH domain-containing protein 2;EH domain-containing protein 1;EH domain-containing protein 3 no no 3 0.0018525 66.692 2 1.8239 1.8567 NaN 1 Median 1.8239 1.8567 NaN 1 0 Median NaN NaN NaN 0 0 Median 19737000 4982700 14754000 19737000 4982700 14754000 0 0 0 8367 57;172 8558 22250;22251 34939;34940;34941 34940 3 LLPLQR SSFKKLQKFYIDPYKLLPLQRFLPRPPGEK QKFYIDPYKLLPLQRFLPRPPGEKGPPRGG K L L Q R F 0 1 0 0 0 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 6 0 738.47521 A0A024RDJ3;Q9NY12 A0A024RDJ3 151 156 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2 0.042388 105.82 1 0.82386 0.93621 NaN 1 Median 0.82386 0.93621 NaN 1 0 Median NaN NaN NaN 0 0 Median 111110000 58191000 52914000 111110000 58191000 52914000 0 0 0 8368 387 8559 22252 34942 34942 1 LLPPEDTQELIFK DRMMQTILHFPQNRRLLPPEDTQELIFKDK RRLLPPEDTQELIFKDKSRVDLDGLYDPCF R L L F K D 0 0 0 1 0 1 2 0 0 1 3 1 0 1 2 0 1 0 0 0 0 0 13 0 1541.8341 O60287 O60287 1615 1627 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00037217 85.958 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22531000 0 22531000 22531000 0 22531000 0 0 0 8369 1392 8560 22253;22254 34943;34944 34943 2 LLPPLLQIVCK LAVLSDGAGDHIRQRLLPPLLQIVCKGLED IRQRLLPPLLQIVCKGLEDPSQVVRNAALF R L L C K G 0 0 0 0 1 1 0 0 0 1 4 1 0 0 2 0 0 0 0 1 0 0 11 0 1292.789 H0YN14;D3DS63;B3KTB3;B3KT38;B3KPS9;Q59FI4;Q8TEX9;B3KPY9;Q6I9Y8;B3KSQ4;Q59H62;B3KQ33 H0YN14 391 401 IPO4 Importin-4 yes no 2 0.032297 37.727 1 1.0734 1.1642 NaN 1 Median 1.0734 1.1642 NaN 1 0 Median NaN NaN NaN 0 0 Median 3402700 1387900 2014900 3402700 1387900 2014900 0 0 0 8370 923 8561 22255 34945 34945 1 LLPQGLAVYASPENK RGDLVSVKKSLGRNRLLPQGLAVYASPENK LLPQGLAVYASPENKKLFEEEKLLRQEGKL R L L N K K 2 0 1 0 0 1 1 1 0 0 3 1 0 0 2 1 0 0 1 1 0 0 15 0 1598.8668 Q9BYD2;B4DDZ7;B4DUJ1;Q5SZR1 Q9BYD2 123 137 MRPL9 39S ribosomal protein L9, mitochondrial yes no 2 0.00022025 64.121 2 1.0551 1.0931 23.819 2 Median 1.0551 1.0931 23.819 2 0 Median NaN NaN NaN 0 0 Median 23903000 9392200 14511000 23903000 9392200 14511000 0 0 0 8371 2018 8562 22256;22257 34946;34947 34947 2 LLPSLIGR LSSFDFFLTDARIRRLLPSLIGRHFYQRKK TDARIRRLLPSLIGRHFYQRKKVPVSVNLL R L L G R H 0 1 0 0 0 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 8 0 867.55419 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9;I3L3C4 O76021 164 171 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.0023307 100.74 2 0.65975 0.77877 1.1421 2 Median 0.65975 0.77877 1.1421 2 0 Median NaN NaN NaN 0 0 Median 1464300000 856090000 608180000 1464300000 856090000 608180000 0 0 0 8372 1415 8563 22258;22259 34948;34949;34950;34951;34952;34953 34952 6 LLPSSHVAR IPSCKDVAPVEKTIKLLPSSHVARLQIFSV VEKTIKLLPSSHVARLQIFSVEGQKAIQIK K L L A R L 1 1 0 0 0 0 0 0 1 0 2 0 0 0 1 2 0 0 0 1 0 0 9 0 978.56106 A6NHR9;J3KTL8 A6NHR9 1030 1038 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0015199 67.993 2 0.95035 1.0112 6.23 2 Median 0.95035 1.0112 6.23 2 0 Median NaN NaN NaN 0 0 Median 49936000 25721000 24215000 49936000 25721000 24215000 0 0 0 8373 684 8564 22260;22261 34954;34955;34956;34957 34955 4 LLQAETASNSAR MAESEKSQKLEERLRLLQAETASNSARAAE RLRLLQAETASNSARAAERSSALREEVQSL R L L A R A 3 1 1 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1259.647 A0A024R5M9;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1271 1282 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 5.1114E-13 134.57 2 2 1.1404 1.0712 19.296 4 Median 0.83349 0.90459 3.7678 2 0 Median 1.5408 1.2595 2.7563 2 0 Median 108360000 57634000 50722000 86479000 48350000 38129000 21877000 9284400 12592000 8374 186;1747 8565 22262;22263;22264;22265 34958;34959;34960;34961;34962;34963 34959 6 LLQAFLER PVLWERTGNIPALVRLLQAFLERGSNTIAS NIPALVRLLQAFLERGSNTIASAAADKIPG R L L E R G 1 1 0 0 0 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 8 0 988.57057 B4DUC5;P55060;B4DPS6;B4DM31;B4DS32 B4DUC5 490 497 CSE1L Exportin-2 yes no 2 0.0070613 84.568 2 1.1898 1.2675 54.876 2 Median 1.1898 1.2675 54.876 2 0 Median NaN NaN NaN 0 0 Median 61088000 29756000 31332000 61088000 29756000 31332000 0 0 0 8375 1037 8566 22266;22267 34964;34965 34964 2 LLQALAQYQNHLQEQPR GRLVKDQEALMKSVKLLQALAQYQNHLQEQ QALAQYQNHLQEQPRKALVDILSEVSKATL K L L P R K 2 1 1 0 0 5 1 0 1 0 4 0 0 0 1 0 0 0 1 0 0 0 17 0 2049.0756 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 162 178 MYBBP1A Myb-binding protein 1A yes no 2;3 4.2011E-26 147.64 2 3 0.93305 0.89537 9.3302 5 Median 0.84202 0.94254 7.2612 2 0 Median 0.98576 0.8106 7.8638 3 0 Median 159580000 82710000 76868000 118120000 61932000 56184000 41462000 20778000 20685000 8376 1997 8567 22268;22269;22270;22271;22272 34966;34967;34968;34969;34970;34971;34972;34973;34974 34969 9 LLQAVTDLGWSR DSEALGFEHMGLDPRLLQAVTDLGWSRPTL DPRLLQAVTDLGWSRPTLIQEKAIPLALEG R L L S R P 1 1 0 1 0 1 0 1 0 0 3 0 0 0 0 1 1 1 0 1 0 0 12 0 1357.7354 Q9NY93;Q53HB9;G3V0G3;F8WDT8;F8WEI3 Q9NY93 18 29 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.00016719 91.855 2 0.61861 0.61326 NaN 1 Median 0.61861 0.61326 NaN 1 0 Median NaN NaN NaN 0 0 Median 17578000 7062500 10516000 17578000 7062500 10516000 0 0 0 8377 2081 8568 22273;22274 34975;34976;34977;34978 34978 4 LLQAVTDLGWSRPTLIQEK DSEALGFEHMGLDPRLLQAVTDLGWSRPTL VTDLGWSRPTLIQEKAIPLALEGKDLLARA R L L E K A 1 1 0 1 0 2 1 1 0 1 4 1 0 0 1 1 2 1 0 1 0 0 19 1 2167.2001 Q9NY93;Q53HB9;G3V0G3;F8WDT8;F8WEI3 Q9NY93 18 36 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 2.5372E-08 89.261 2 2 0.95102 0.96613 12.705 4 Median 0.82204 0.96613 0.16039 2 0 Median 1.2547 1.0762 19.177 2 0 Median 122110000 63842000 58265000 84201000 46733000 37468000 37906000 17109000 20797000 8378 2081 8569 22275;22276;22277;22278 34979;34980;34981;34982;34983;34984 34980 6 LLQDANYNVEK QAGYVGEDIESVIAKLLQDANYNVEKAQQG VIAKLLQDANYNVEKAQQGIVFLDEVDKIG K L L E K A 1 0 2 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1305.6565 Q9H072;A0A024R5X7;O76031 Q9H072 339 349 DKFZp586J151;CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2 9.7016E-05 93.111 2 2.0867 2.154 NaN 1 Median 2.0867 2.154 NaN 1 0 Median NaN NaN NaN 0 0 Median 19617000 3186600 16431000 19617000 3186600 16431000 0 0 0 8379 191 8570 22279;22280 34985;34986 34986 2 LLQDFFNGK IVLVGGSTRIPKIQKLLQDFFNGKELNKSI IPKIQKLLQDFFNGKELNKSINPDEAVAYG K L L G K E 0 0 1 1 0 1 0 1 0 0 2 1 0 2 0 0 0 0 0 0 0 0 9 0 1080.5604 Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5;E9PN89;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;A0A024R6B5;P54652;B3KUS2 V9HW22 349 357 HSPA6;HSPA8;HEL-S-72p;HSPA2 Heat shock 70 kDa protein 6;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2 3.4241E-11 138.9 2 2 1.3255 1.4278 15.648 3 Plateau 1.2681 1.4278 NaN 1 0 Median 1.3852 1.1066 7.5347 2 0 Median 127720000 32590000 95132000 119250000 28835000 90415000 8471100 3754600 4716600 8380 1467;1248;845 8571 22281;22282;22283;22284 34987;34988;34989;34990;34991;34992;34993;34994;34995;34996 34991 10 LLQDFFNGR LVLVGGSTRIPKVQKLLQDFFNGRDLNKSI IPKVQKLLQDFFNGRDLNKSINPDEAVAYG K L L G R D 0 1 1 1 0 1 0 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 9 0 1108.5665 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNX1;B4E1T6 A8K5I0 349 357 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 8.9354E-06 137.9 3 2 0.92959 0.93334 3.4847 4 Median 0.83356 0.93456 0.92823 2 0 Median 1.0614 0.90536 5.0489 2 0 Median 191690000 97082000 94606000 180970000 91617000 89356000 10716000 5465500 5250300 8381 533 8572 22285;22286;22287;22288;22289 34997;34998;34999;35000;35001;35002;35003;35004;35005;35006 35000 10 LLQDFNR DKFKTLSEKNNITQKLLQDFNRFLNTTFSF EKNNITQKLLQDFNRFLNTTFSFFPPFVSC K L L N R F 0 1 1 1 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 904.47667 P78527 P78527 2836 2842 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.026711 76.847 1 0.57538 0.6368 NaN 1 Median 0.57538 0.6368 NaN 1 0 Median NaN NaN NaN 0 0 Median 61008000 37627000 23381000 61008000 37627000 23381000 0 0 0 8382 1665 8573 22290 35007;35008 35007 2 LLQDLQLGDEEDAR RKKNSGPKAAKKKKRLLQDLQLGDEEDARK RLLQDLQLGDEEDARKRNPKAFAVQSAVRM R L L A R K 1 1 0 3 0 2 2 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 14 0 1613.7897 Q14692 Q14692 25 38 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 7.7464E-22 149.23 3 2 1.0071 1.052 3.1593 5 Median 0.92376 1.0513 2.0388 3 0 Median 1.3231 1.0835 3.2925 2 0 Median 233850000 120350000 113500000 206830000 108560000 98276000 27013000 11790000 15223000 8383 1742 8574 22291;22292;22293;22294;22295 35009;35010;35011;35012;35013;35014;35015 35010 7 LLQDQLR EQSQKEASDLLEQNRLLQDQLRVALGREQS SDLLEQNRLLQDQLRVALGREQSAREGYVL R L L L R V 0 1 0 1 0 2 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 884.50797 J3KSW8;U6FSN9;Q6WCQ1;B9EGI2;Q8N236;H0Y2S9 J3KSW8 505 511 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.031834 73.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5212900 0 5212900 5212900 0 5212900 0 0 0 8384 1330 8575 22296 35016 35016 1 LLQDSLGGSAHSILIANIAPER QGLPRVPYRDSKLTRLLQDSLGGSAHSILI GSAHSILIANIAPERRFYLDTVSALNFAAR R L L E R R 3 1 1 1 0 1 1 2 1 3 4 0 0 0 1 3 0 0 0 0 0 0 22 0 2274.2332 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 328 349 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 5.1686E-16 100.64 2 2 0.95285 0.90265 18.254 4 Median 0.76209 0.79643 22.188 2 0 Median 1.1717 0.95798 12.895 2 0 Median 76491000 35530000 40962000 45147000 22302000 22845000 31344000 13227000 18117000 8385 1745 8576 22297;22298;22299;22300 35017;35018;35019;35020;35021;35022 35021 6 LLQDSVDFSLADAINTEFK RSSAVRLRSSVPGVRLLQDSVDFSLADAIN SVDFSLADAINTEFKNTRTNEKVELQELND R L L F K N 2 0 1 3 0 1 1 0 0 1 3 1 0 2 0 2 1 0 0 1 0 0 19 0 2125.0579 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;A0A1B0GUA0;A0A1B0GTT5;A0A1B0GVG8 V9HWE1 79 97 HEL113;VIM Vimentin yes no 2 1.9907E-22 151.9 7 1 1.112 1.2097 51.029 5 Median 1.103 1.2021 3.8369 4 0 Median 4.4059 3.7362 NaN 1 0 Median 242490000 103570000 138910000 176620000 91008000 85613000 65864000 12565000 53299000 8386 1457 8577 22301;22302;22303;22304;22305;22306;22307;22308 35023;35024;35025;35026;35027;35028;35029;35030;35031;35032;35033;35034;35035;35036;35037 35028 15 LLQEALK LLYKAEGVKIRDDERLLQEALKRKEKRRAQ VKIRDDERLLQEALKRKEKRRAQRQRRWEK R L L L K R 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 813.496 B3KNS8;O75683 B3KNS8 288 294 SURF6 Surfeit locus protein 6 yes no 2 0.014517 86.086 2 0.84627 0.93963 NaN 1 Median 0.84627 0.93963 NaN 1 0 Median NaN NaN NaN 0 0 Median 49297000 27810000 21486000 49297000 27810000 21486000 0 0 0 8387 918 8578 22309;22310 35038;35039;35040 35038 3 LLQELSHPNIIGLLDAFGHK EAKDGINRTALREIKLLQELSHPNIIGLLD SHPNIIGLLDAFGHKSNISLVFDFMETDLE K L L H K S 1 0 1 1 0 1 1 2 2 2 5 1 0 1 1 1 0 0 0 0 0 0 20 0 2214.2161 D6RAD4;A0A0S2Z3F9;P50613 D6RAD4 65 84 CDK7 Cyclin-dependent kinase 7 yes no 4 0.011235 24.3 2 0.9158 0.91467 2.8437 2 Median 0.9158 0.91467 2.8437 2 0 Median NaN NaN NaN 0 0 Median 22519000 12625000 9894300 22519000 12625000 9894300 0 0 0 8388 547 8579 22311;22312 35041;35042 35041 2 LLQETMYMTVSIIDR AILIDWLVQVQMKFRLLQETMYMTVSIIDR LLQETMYMTVSIIDRFMQNNCVPKKMLQLV R L L D R F 0 1 0 1 0 1 1 0 0 2 2 0 2 0 0 1 2 0 1 1 0 0 15 0 1811.9161 P14635;E9PC90;H1UBN2;H0YA62 P14635 218 232 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 1.7802E-05 89.301 1 1.3684 1.3884 NaN 1 Median 1.3684 1.3884 NaN 1 0 Median NaN NaN NaN 0 0 Median 20294000 9790200 10504000 20294000 9790200 10504000 0 0 0 8389 1483 8580 22313 35043;35044 35043 1241;1242 2 LLQFPELR AAPYFQQLRQTTAPRLLQFPELRLVQFDSG RQTTAPRLLQFPELRLVQFDSGKLEALAIL R L L L R L 0 1 0 0 0 1 1 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 1014.5862 Q96L91 Q96L91 1884 1891 EP400 E1A-binding protein p400 yes yes 2 0.0016704 102.71 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2434600 2434600 0 2434600 2434600 0 0 0 0 8390 1977 8581 22314;22315 35045;35046 35046 2 LLQFYAETCPAPER ISGESGAGKTEATKRLLQFYAETCPAPERG RLLQFYAETCPAPERGGAVRDRLLQSNPVL R L L E R G 2 1 0 0 1 1 2 0 0 0 2 0 0 1 2 0 1 0 1 0 0 0 14 0 1693.8134 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6;I3L168;I3L3F5 F5H6E2 129 142 MYO1C Unconventional myosin-Ic yes no 2 1.1222E-10 112.15 1 1 1.4392 1.2494 NaN 1 Median NaN NaN NaN 0 0 Median 1.4392 1.2494 NaN 1 0 Median 2358000 1017700 1340300 0 0 0 2358000 1017700 1340300 8391 1088 8582 22316;22317 35047;35048;35049 35047 3 LLQIIER ALKLNSNEARLKFPRLLQIIERYPEETLSL EARLKFPRLLQIIERYPEETLSLMTKEISS R L L E R Y 0 1 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 883.5491 P78527 P78527 3468 3474 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.026792 79.116 2 1 0.80212 0.91383 56.779 3 Plateau 0.76385 0.86261 8.1581 2 0 Median 0.38049 0.32428 NaN 1 0 Median 226980000 129670000 97311000 218020000 123140000 94883000 8953900 6526000 2427900 8392 1665 8583 22318;22319;22320 35050;35051;35052;35053 35050 4 LLQLTEK LLARKHYASEEIKEKLLQLTEKRKEMIDKW ASEEIKEKLLQLTEKRKEMIDKWEDRWEWL K L L E K R 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 7 0 843.50657 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1906 1912 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.013149 82.305 2 2.1789 2.3408 NaN 1 Median 2.1789 2.3408 NaN 1 0 Median NaN NaN NaN 0 0 Median 22837000 6626700 16210000 22837000 6626700 16210000 0 0 0 8393 415 8584 22321;22322 35054;35055 35054 2 LLQLVEDR LISVLREANQAINPKLLQLVEDRGSGRTRG NQAINPKLLQLVEDRGSGRTRGRGGMKDDR K L L D R G 0 1 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 984.5604 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 460 467 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0013457 109.86 2 2 1.3679 1.3195 43.163 4 Median 1.6902 1.9126 2.1029 2 0 Median 1.0979 0.90633 2.7234 2 0 Median 162150000 63712000 98433000 143420000 54984000 88435000 18727000 8728100 9998600 8394 1009 8585 22323;22324;22325;22326 35056;35057;35058;35059;35060;35061 35057 6 LLQQEEEIK ______________________________ SECSARLLQQEEEIKSLTAEIDRLKNCGCL R L L I K S 0 0 0 0 0 2 3 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1128.6027 P54136;E5RJM9;E5RH09 P54136 12 20 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 9.0351E-05 110.41 2 1.5323 1.6741 0.63685 2 Median 1.5323 1.6741 0.63685 2 0 Median NaN NaN NaN 0 0 Median 88698000 31891000 56807000 88698000 31891000 56807000 0 0 0 8395 1609 8586 22327;22328 35062;35063 35063 2 LLQQGTAPAQAK AFVKALQQEQEIEQRLLQQGTAPAQAKAEP EQRLLQQGTAPAQAKAEPTAAPHPVLKQVI R L L A K A 3 0 0 0 0 3 0 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 12 0 1224.6826 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 476 487 GATAD2A Transcriptional repressor p66-alpha yes no 2 4.1983E-18 147.78 2 2 1.11 1.0569 32.027 4 Median 0.73165 0.81893 3.5528 2 0 Median 1.7495 1.4147 8.7147 2 0 Median 135020000 70257000 64763000 121520000 64658000 56862000 13501000 5598900 7901700 8396 229 8587 22329;22330;22331;22332 35064;35065;35066;35067;35068;35069 35067 6 LLQQLFLK EAYSLSDNDYDGIKKLLQQLFLKAPVNTAE DYDGIKKLLQQLFLKAPVNTAELTDLLIQQ K L L L K A 0 0 0 0 0 2 0 0 0 0 4 1 0 1 0 0 0 0 0 0 0 0 8 0 1001.6274 Q9P287;B4E318;B4DUS0 Q9P287 77 84 BCCIP BRCA2 and CDKN1A-interacting protein yes no 2 0.0056884 89.673 2 2 2.4246 2.3199 9.1587 3 Plateau 2.2708 2.3199 NaN 1 0 Median 2.6209 2.0997 10.073 2 0 Median 32041000 5256900 26784000 26138000 3603000 22535000 5903100 1653900 4249200 8397 2094 8588 22333;22334;22335;22336 35070;35071;35072;35073;35074 35072 5 LLQQLR VTGQAFEDMQEQNGRLLQQLREKDDANFKL EDMQEQNGRLLQQLREKDDANFKLMSERIK R L L L R E 0 1 0 0 0 2 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 769.48102 B4DMM1;A0A0S2Z4Z2;H3BP71;A8K6K1;A0A0S2Z537;A0A024QZG0;O75150;B4E313;B4DEN2;B4DFU2 B4DMM1 467 472 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 0.026175 130.16 3 0.72499 0.83164 13.487 3 Median 0.72499 0.83164 13.487 3 0 Median NaN NaN NaN 0 0 Median 400990000 220800000 180180000 400990000 220800000 180180000 0 0 0 8398 21 8589 22337;22338;22339 35075;35076;35077 35076 3 LLQQQNDITGLSR LLQQLENVTKERQMKLLQQQNDITGLSRQV MKLLQQQNDITGLSRQVKHVMNFTNWAIAS K L L S R Q 0 1 1 1 0 3 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1484.7947 H0Y612;A0A024R0F6;Q9UPN9;B3KN30 H0Y612 132 144 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 2 9.6856E-14 133.81 2 1 1.4507 1.3664 14.327 2 Median 1.4959 1.5121 NaN 1 0 Median 1.4069 1.2347 NaN 1 0 Median 16046000 3068200 12978000 14313000 2219300 12094000 1733300 848920 884390 8399 45 8590 22340;22341;22342 35078;35079;35080 35079 3 LLQSNPVLEAFGNAK ETCPAPERGGAVRDRLLQSNPVLEAFGNAK LLQSNPVLEAFGNAKTLRNDNSSRFGKYMD R L L A K T 2 0 2 0 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 15 0 1599.8621 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6 F5H6E2 150 164 MYO1C Unconventional myosin-Ic yes no 2 4.1467E-07 100.72 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68710000 0 68710000 68710000 0 68710000 0 0 0 8400 1088 8591 22343;22344 35081;35082 35081 2 LLQTAATAAQQGGQANHPTAAVVTEK EIARIVARCLWEESRLLQTAATAAQQGGQA GGQANHPTAAVVTEKQQMLEQHLQDVRKRV R L L E K Q 7 0 1 0 0 4 1 2 1 0 2 1 0 0 1 0 4 0 0 2 0 0 26 0 2575.3354 G8JLH9;B4DNP0;B7ZA24;B4DVR6;B5BTZ6;P40763 G8JLH9 17 42 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 3 4.6438E-24 98.299 3 2 1.7458 1.8549 14.412 3 Plateau 1.7309 1.8549 NaN 1 0 Median 1.8309 1.4577 5.3166 2 0 Median 39229000 10742000 28488000 29423000 7199000 22224000 9806200 3542600 6263600 8401 1015 8592 22345;22346;22347;22348;22349 35083;35084;35085;35086;35087;35088;35089 35083 7 LLQTDDEEEAGLLELLK TWMNNFHTLLTLDNKLLQTDDEEEAGLLEL QTDDEEEAGLLELLKSQICDNAALYAQKYD K L L L K S 1 0 0 2 0 1 4 1 0 0 6 1 0 0 0 0 1 0 0 0 0 0 17 0 1927.999 B4DUC5;P55060;B4DS32;B4DM67 B4DUC5 35 51 CSE1L Exportin-2 yes no 2 9.0286E-07 91.858 2 2.305 2.3237 11.412 2 Median 2.305 2.3237 11.412 2 0 Median NaN NaN NaN 0 0 Median 29150000 8796200 20354000 29150000 8796200 20354000 0 0 0 8402 1037 8593 22350;22351 35090;35091;35092 35091 3 LLQTFR RAAKCKIPALDLLIKLLQTFRSSRLMDEFK IPALDLLIKLLQTFRSSRLMDEFKIGELFS K L L F R S 0 1 0 0 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 6 0 776.45447 P78527;B4DL41;F5GX40 P78527 134 139 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.041275 77.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8403 1665 8594 22352 35093 35093 1 LLQVASPFLEPHLVR IALYNWLIQVDLADKLLQVASPFLEPHLVR LLQVASPFLEPHLVRMAKVDQNRVRYMDLL K L L V R M 1 1 0 0 0 1 1 0 1 0 4 0 0 1 2 1 0 0 0 2 0 0 15 0 1717.9879 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1014 1028 NUP155 Nuclear pore complex protein Nup155 yes no 3 6.895E-05 55.841 2 1 1.3529 1.4186 8.6229 3 Plateau 1.3503 1.4059 2.536 2 0 Median 1.4118 1.2148 NaN 1 0 Median 46197000 15599000 30598000 42822000 14432000 28390000 3375200 1167000 2208100 8404 39 8595 22353;22354;22355 35094;35095;35096;35097;35098;35099 35096 6 LLQVVEEPQALAAFLR VWSEKGQVEVFALRRLLQVVEEPQALAAFL LQVVEEPQALAAFLRDEQAQMKPIFSFAGH R L L L R D 3 1 0 0 0 2 2 0 0 0 4 0 0 1 1 0 0 0 0 2 0 0 16 0 1796.0196 Q8NCK5;Q9BQ67;Q8TCJ8;B2RDP6;M0QX71 Q8NCK5 183 198 GRWD1;DKFZp564C172 Glutamate-rich WD repeat-containing protein 1 yes no 2 3.2264E-06 112.5 2 0.84837 0.92076 6.8321 2 Median 0.84837 0.92076 6.8321 2 0 Median NaN NaN NaN 0 0 Median 85926000 46030000 39896000 85926000 46030000 39896000 0 0 0 8405 1922 8596 22356;22357 35100;35101;35102;35103 35101 4 LLQYSDALEHLLTTGQGVVLER DGNSYRLQSWLYSSRLLQYSDALEHLLTTG LEHLLTTGQGVVLERSIFSDFVFLEAMYNQ R L L E R S 1 1 0 1 0 2 2 2 1 0 6 0 0 0 0 1 2 0 1 2 0 0 22 0 2454.3118 Q8N1B9;Q59FM0;C9J6X0;Q53SW4;Q7Z518;A8K413;A0A087WXC5;A0A024R4B3;E7ESZ7;O95299 Q8N1B9 140 161 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 3 9.2548E-08 58.366 1 1.7835 1.8255 NaN 1 Median 1.7835 1.8255 NaN 1 0 Median NaN NaN NaN 0 0 Median 5078000 1289300 3788700 5078000 1289300 3788700 0 0 0 8406 152 8597 22358 35104;35105;35106 35105 3 LLRSDAEAVSTR TEYIESPDVENEVKRLLRSDAEAVSTRWEV VKRLLRSDAEAVSTRWEVIAEDGTKEIESQ R L L T R W 2 2 0 1 0 0 1 0 0 0 2 0 0 0 0 2 1 0 0 1 0 0 12 1 1316.7048 A0A024RCI3;Q5H9L4 A0A024RCI3 182 193 TAF7L Transcription initiation factor TFIID subunit 7-like yes no 3 0.0032569 37.18 1 0.86803 1.0005 NaN 1 Median 0.86803 1.0005 NaN 1 0 Median NaN NaN NaN 0 0 Median 62693000 31157000 31535000 62693000 31157000 31535000 0 0 0 8407 361 8598 22359 35107 35107 1 LLSAGATR DMADTCGTICHAADKLLSAGATRVYAILTH ICHAADKLLSAGATRVYAILTHGIFSGPAI K L L T R V 2 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 787.4552 Q53FW2;P60891;B1ALA9;B7ZB02 Q53FW2 236 243 PRPS1 Ribose-phosphate pyrophosphokinase 1 no no 2 0.042651 46.426 1 2.0282 2.0929 NaN 1 Median 2.0282 2.0929 NaN 1 0 Median NaN NaN NaN 0 0 Median 10250000 3613100 6636500 10250000 3613100 6636500 0 0 0 8408 1626 8599 22360 35108 35108 1 LLSDFLDSEVSELR SKEVEETATAKNVLKLLSDFLDSEVSELRT KLLSDFLDSEVSELRTGAAEGLAKLMFSGL K L L L R T 0 1 0 2 0 0 2 0 0 0 4 0 0 1 0 3 0 0 0 1 0 0 14 0 1621.8199 Q9BPX3;Q6NUR1 Q9BPX3 695 708 NCAPG Condensin complex subunit 3 yes no 2 1.7562E-37 164.9 6 4 0.88095 0.98773 23.884 6 Median 0.84282 0.94662 15.894 4 0 Median 1.5215 1.3234 3.6445 2 0 Median 1016100000 491230000 524860000 642500000 344030000 298470000 373580000 147190000 226390000 8409 1995 8600 22361;22362;22363;22364;22365;22366;22367;22368;22369;22370 35109;35110;35111;35112;35113;35114;35115;35116;35117;35118;35119;35120;35121;35122;35123;35124;35125;35126;35127 35115 18 LLSECQYK LERTMTVFRKAHELKLLSECQYKQLSVSLL RKAHELKLLSECQYKQLSVSLLCYNFLREA K L L Y K Q 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 8 0 1039.5008 B3KQ21;Q9NYH9;B3KX32 B3KQ21 366 373 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.0077064 81.784 2 0.76365 0.78044 31.683 2 Median 0.76365 0.78044 31.683 2 0 Median NaN NaN NaN 0 0 Median 23098000 11061000 12037000 23098000 11061000 12037000 0 0 0 8410 925 8601 22371;22372 35128;35129 35129 2 LLSEEVFDFSSGQITQVK RTSESLCQNNMVILKLLSEEVFDFSSGQIT EEVFDFSSGQITQVKSKHLKDSMCNEFSQI K L L V K S 0 0 0 1 0 2 2 1 0 1 2 1 0 2 0 3 1 0 0 2 0 0 18 0 2026.0259 O14980 O14980 173 190 XPO1 Exportin-1 yes yes 2 0.0019631 52.555 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12466000 0 12466000 12466000 0 12466000 0 0 0 8411 1371 8602 22373;22374 35130;35131;35132 35132 3 LLSEGVCTNDNIPSVSSINR KRECPSIFAWEIRDRLLSEGVCTNDNIPSV VCTNDNIPSVSSINRVLRNLASEKQQMGAD R L L N R V 0 1 3 1 1 0 1 1 0 2 2 0 0 0 1 4 1 0 0 2 0 0 20 0 2174.0637 D1KF47;Q66SS1;B3KQG1;F1T0F8;D3DQZ8;P26367;Q59GD2 D1KF47 106 125 PAX6 Paired box protein Pax-6 yes no 2 0.00051084 51.546 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5406900 5406900 0 5406900 5406900 0 0 0 0 8412 927 8603 22375 35133;35134 35134 2 LLSFMAPIDHTTMNDDAR KASKGRKLRFHVLSKLLSFMAPIDHTTMND FMAPIDHTTMNDDARTELYRSLFGQLHPPD K L L A R T 2 1 1 3 0 0 0 0 1 1 2 0 2 1 1 1 2 0 0 0 0 0 18 0 2046.9503 Q9NY61 Q9NY61 523 540 AATF Protein AATF yes yes 3 0.00051485 50.358 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32109000 0 32109000 32109000 0 32109000 0 0 0 8413 2080 8604 22376 35135 35135 1912;1913 1 LLSGGSVLDIIK YTSFVVKDELWLVMKLLSGGSVLDIIKHIV VMKLLSGGSVLDIIKHIVAKGEHKSGVLDE K L L I K H 0 0 0 1 0 0 0 2 0 2 3 1 0 0 0 2 0 0 0 1 0 0 12 0 1213.7282 A0A024R2M7;O95747;C9JIG9 A0A024R2M7 94 105 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 0.00016719 91.855 1 2 1.0034 0.83692 52.645 3 Median 1.9747 1.991 NaN 1 0 Median 0.98597 0.80231 5.9728 2 0 Median 17957000 6692800 11264000 13357000 4131900 9225200 4599700 2560800 2038800 8414 117 8605 22377;22378;22379 35136;35137;35138;35139 35136 4 LLSGSLDR HKTVTCLCLSSSGQRLLSGSLDRKVKVYST LSSSGQRLLSGSLDRKVKVYSTTSYKVVHS R L L D R K 0 1 0 1 0 0 0 1 0 0 3 0 0 0 0 2 0 0 0 0 0 0 8 0 859.47633 Q8TED0;H0Y8P4 Q8TED0 263 270 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.022631 57.047 1 1 1.0139 0.98672 4.2082 2 Median 0.89132 1.0165 NaN 1 0 Median 1.1532 0.95779 NaN 1 0 Median 150660000 71172000 79492000 139730000 65974000 73754000 10936000 5198200 5738300 8415 1936 8606 22380;22381 35140;35141 35140 2 LLSISGK EEDAESEDEEEEDVKLLSISGKRSAPGGGS DEEEEDVKLLSISGKRSAPGGGSKVPQKKV K L L G K R 0 0 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 7 0 716.44324 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;V9HVU7;A0A024RAP1;E5RI98;Q9NX34 A0A0S2Z4G7 135 141 NPM1;CLEC2D Nucleophosmin no no 2 0.014183 100.74 2 1 1.1906 1.4076 60.377 3 Median 1.2097 1.4397 3.1874 2 0 Median 0.59226 0.5063 NaN 1 0 Median 2612900000 1175000000 1437900000 2502700000 1105500000 1397100000 110220000 69426000 40794000 8416 559;1213;2078 8607 22382;22383;22384 35142;35143;35144;35145;35146;35147 35145 6 LLSITVR ILQSTRLPLISGFYKLLSITVRNAKKIKYF PLISGFYKLLSITVRNAKKIKYFEGVSPKS K L L V R N 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 1 0 0 1 0 0 7 0 800.51199 P78527;B4DL41 P78527 669 675 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.023524 90.986 2 1 0.64127 0.74365 48.527 3 Plateau 0.64369 0.70111 8.3305 2 0 Median 0.35389 0.30441 NaN 1 0 Median 98288000 61019000 37269000 90658000 55563000 35095000 7629600 5455800 2173800 8417 1665 8608 22385;22386;22387 35148;35149;35150 35148 3 LLSLDR PLQKLSSMDPAMLERLLSLDRLLASQGSQG SMDPAMLERLLSLDRLLASQGSQGAPLLST R L L D R L 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 6 0 715.42284 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 443 448 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.040187 107.65 1 0.90121 0.92191 NaN 1 Median 0.90121 0.92191 NaN 1 0 Median NaN NaN NaN 0 0 Median 34377000 17094000 17283000 34377000 17094000 17283000 0 0 0 8418 1745 8609 22388 35151 35151 1 LLSLISIALPENK PVIRRSSLLTEKLLRLLSLISIALPENKVS LRLLSLISIALPENKVSEAQANSGSGASST R L L N K V 1 0 1 0 0 0 1 0 0 2 4 1 0 0 1 2 0 0 0 0 0 0 13 0 1409.8494 Q5H924;A0A024R9Y3;A0A024R9U8;A0A024R9W5;Q7Z6Z7;Q5H935;H0Y659 Q5H924 2489 2501 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 1.9708E-16 126.67 3 1.441 1.4557 NaN 1 Median 1.441 1.4557 NaN 1 0 Median NaN NaN NaN 0 0 Median 8212200 2629000 5583200 8212200 2629000 5583200 0 0 0 8419 289 8610 22389;22390;22391 35152;35153;35154;35155 35155 4 LLSPGAR ELGAYCGYSAVRMARLLSPGARLITIEINP YSAVRMARLLSPGARLITIEINPDCAAITQ R L L A R L 1 1 0 0 0 0 0 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 7 0 712.42317 B8XPJ7;B8XPJ8;A0A140VJG8;P21964;E7EMS6;E7EUU8;A0A1S6YJG6;F8WBW9 B8XPJ7 79 85 COMT Catechol O-methyltransferase yes no 2 0.026743 77.748 2 1.8071 2.0955 NaN 1 Median 1.8071 2.0955 NaN 1 0 Median NaN NaN NaN 0 0 Median 98761000 24571000 74190000 98761000 24571000 74190000 0 0 0 8420 601 8611 22392;22393 35156;35157 35157 2 LLSPVVPQISAPQSNK DLAKNADKVLELMNKLLSPVVPQISAPQSN LSPVVPQISAPQSNKERLKNMALSIAERYR K L L N K E 1 0 1 0 0 2 0 0 0 1 2 1 0 0 3 3 0 0 0 2 0 0 16 0 1676.9461 Q8N1F7;A8K897;H3BVG0;H3BVE2;H3BRD9 Q8N1F7 645 660 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00010618 78.964 2 1.6917 1.7301 13.726 2 Median 1.6917 1.7301 13.726 2 0 Median NaN NaN NaN 0 0 Median 45281000 16582000 28700000 45281000 16582000 28700000 0 0 0 8421 1904 8612 22394;22395 35158;35159;35160;35161 35161 4 LLSQGVIAFR LDLTGKNLHPDVTGRLLSQGVIAFRCPRSF DVTGRLLSQGVIAFRCPRSFMDQPLAEHFS R L L F R C 1 1 0 0 0 1 0 1 0 1 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1102.6499 D6R9R7;B4DHK6;A0A024R069;A0A0A0MTL5;Q13309 D6R9R7 155 164 SKP2 S-phase kinase-associated protein 2 yes no 2 6.2002E-05 98.582 1 0.9963 1.0012 NaN 1 Median 0.9963 1.0012 NaN 1 0 Median NaN NaN NaN 0 0 Median 11139000 5313800 5825400 11139000 5313800 5825400 0 0 0 8422 38 8613 22396 35162 35162 1 LLSRPQDALEGVVLSPSLEAR TVLEALRHPIQVSRRLLSRPQDALEGVVLS DALEGVVLSPSLEARVRDIAIATRNTKKNR R L L A R V 2 2 0 1 0 1 2 1 0 0 5 0 0 0 2 3 0 0 0 2 0 0 21 1 2249.2379 Q9NVI7;H0Y2W2 Q9NVI7 355 375 ATAD3A ATPase family AAA domain-containing protein 3A yes no 3 8.26E-08 61.963 2 2 1.3594 1.3557 25.907 4 Median 1.4678 1.5974 4.4464 2 0 Median 1.1721 1.0555 16.651 2 0 Median 45342000 17762000 27580000 36514000 14659000 21855000 8828200 3102600 5725600 8423 2074 8614 22397;22398;22399;22400 35163;35164;35165;35166;35167;35168 35164 6 LLSSEDIEGMR MSESEQALKGTSQIKLLSSEDIEGMRLVCR SQIKLLSSEDIEGMRLVCRLAREVLDVAAG K L L M R L 0 1 0 1 0 0 2 1 0 1 2 0 1 0 0 2 0 0 0 0 0 0 11 0 1248.602 P53582;Q5CZ91 P53582 130 140 METAP1;DKFZp781C0419 Methionine aminopeptidase 1 yes no 2 0.0042081 50.353 1 1 0.29094 0.25266 NaN 1 Median NaN NaN NaN 0 0 Median 0.29094 0.25266 NaN 1 0 Median 2305600 1685000 620630 0 0 0 2305600 1685000 620630 8424 1605 8615 22401;22402 35169;35170 35170 1393 2 LLSSFDFFLTDAR QTLKKEYKSYEAKLRLLSSFDFFLTDARIR LRLLSSFDFFLTDARIRRLLPSLIGRHFYQ R L L A R I 1 1 0 2 0 0 0 0 0 0 3 0 0 3 0 2 1 0 0 0 0 0 13 0 1530.7718 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 148 160 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.7984E-10 124.1 6 2 0.67966 0.71298 16.416 4 Median 0.67966 0.79892 0.1693 2 0 Median 0.69673 0.60643 6.9653 2 0 Median 1271500000 760050000 511430000 881810000 531060000 350750000 389670000 228980000 160690000 8425 1415 8616 22403;22404;22405;22406;22407;22408;22409;22410 35171;35172;35173;35174;35175;35176;35177;35178;35179;35180;35181;35182 35179 12 LLSSLGGFK RTWHVRRQAQQTVRKLLSSLGGFKLAHGLL QQTVRKLLSSLGGFKLAHGLLEELKTVLSS K L L F K L 0 0 0 0 0 0 0 2 0 0 3 1 0 1 0 2 0 0 0 0 0 0 9 0 920.53312 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 591 599 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.019948 50.703 1 1.4525 1.5053 NaN 1 Median 1.4525 1.5053 NaN 1 0 Median NaN NaN NaN 0 0 Median 11248000 4137500 7110500 11248000 4137500 7110500 0 0 0 8426 1205 8617 22411 35183 35183 1 LLSTCGLVQSVELQEKPDLAESPK VLNVPPYCTEESLSRLLSTCGLVQSVELQE SVELQEKPDLAESPKESRSKFFHPKPVPGF R L L P K E 1 0 0 1 1 2 3 1 0 0 5 2 0 0 2 3 1 0 0 2 0 0 24 1 2640.368 Q9Y3A4 Q9Y3A4 78 101 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 3 2.5672E-27 114.88 2 2 1.0983 1.0918 8.9988 4 Median 0.87129 1.0194 8.5311 2 0 Median 1.35 1.1462 5.7207 2 0 Median 275540000 127180000 148370000 138360000 68396000 69962000 137190000 58781000 78405000 8427 2133 8618 22412;22413;22414;22415 35184;35185;35186;35187;35188;35189;35190 35189 7 LLSTLGEFLEDHFPLPDR ELKTKMLNIKEYKEKLLSTLGEFLEDHFPL TLGEFLEDHFPLPDRSVKKKKKNIQESSVN K L L D R S 0 1 0 2 0 0 2 1 1 0 5 0 0 2 2 1 1 0 0 0 0 0 18 0 2098.0735 D6RJF0;D6RHD3;Q9BS16 D6RJF0 113 130 CENPK Centromere protein K yes no 3 0.001917 32.55 1 0.79703 0.85472 NaN 1 Median 0.79703 0.85472 NaN 1 0 Median NaN NaN NaN 0 0 Median 3379100 2009800 1369300 3379100 2009800 1369300 0 0 0 8428 1203 8619 22416 35191;35192 35191 2 LLSVEGSTLR NAQVTTENQLKYLTRLLSVEGSTLREALTH KYLTRLLSVEGSTLREALTHRKIIAKGEEL R L L L R E 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 2 1 0 0 1 0 0 10 0 1073.6081 F5H6E2;B7Z3E5;O00159;B7Z9C0;D3DTH7 F5H6E2 317 326 MYO1C Unconventional myosin-Ic no no 2 0.00030112 90.761 2 2 1.4361 1.3991 11.278 4 Median 1.1536 1.2975 3.8656 2 0 Median 1.8177 1.5477 7.4625 2 0 Median 192460000 91692000 100770000 182060000 87842000 94221000 10401000 3849800 6551500 8429 1088;1189 8620 22417;22418;22419;22420 35193;35194;35195;35196;35197;35198;35199;35200;35201 35194 9 LLSVNIR DKEALIAKCNDYRRRLLSVNIRVRADLRDN KCNDYRRRLLSVNIRVRADLRDNYSPGWKF R L L I R V 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 7 0 813.50724 P07814;B4DP50 P07814 1334 1340 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.026905 82.263 1 2.1112 2.1688 NaN 1 Median 2.1112 2.1688 NaN 1 0 Median NaN NaN NaN 0 0 Median 25502000 7770300 17732000 25502000 7770300 17732000 0 0 0 8430 1454 8621 22421 35202 35202 1 LLTAEADK ESGIFACAFDQSESRLLTAEADKTIKVYRE FDQSESRLLTAEADKTIKVYREDDTATEET R L L D K T 2 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 859.4651 O43660 O43660 477 484 PLRG1 Pleiotropic regulator 1 yes yes 2 0.0099928 73.26 1 1.6478 1.6618 NaN 1 Median 1.6478 1.6618 NaN 1 0 Median NaN NaN NaN 0 0 Median 7729000 3747500 3981600 7729000 3747500 3981600 0 0 0 8431 1386 8622 22422 35203 35203 1 LLTDGYACEVR PLKEIPPADIPKNKKLLTDGYACEVRCQNI KNKKLLTDGYACEVRCQNIYLTTGYAGSKN K L L V R C 1 1 0 1 1 0 1 1 0 0 2 0 0 0 0 0 1 0 1 1 0 0 11 0 1295.618 Q6NUN2;A3F769;O15226;A3F768;A2I829;A2I831 Q6NUN2 235 245 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.030651 38.567 1 0.72913 0.63732 NaN 1 Median NaN NaN NaN 0 0 Median 0.72913 0.63732 NaN 1 0 Median 933070 364800 568270 0 0 0 933070 364800 568270 8432 655 8623 22423 35204 35204 1 LLTFYNLADCIAEK KLFDWAKTEDAPKDRLLTFYNLADCIAEKL RLLTFYNLADCIAEKLKGLFTLFAGHLVKP R L L E K L 2 0 1 1 1 0 1 0 0 1 3 1 0 1 0 0 1 0 1 0 0 0 14 0 1669.8385 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1933 1946 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0015088 70.488 2 1.7362 1.4225 NaN 1 Median NaN NaN NaN 0 0 Median 1.7362 1.4225 NaN 1 0 Median 8886100 1444500 7441600 0 0 0 8886100 1444500 7441600 8433 897 8624 22424;22425 35205;35206 35205 2 LLTGELLPTDGMIR ALVGPNGAGKSTLLKLLTGELLPTDGMIRK KLLTGELLPTDGMIRKHSHVKIGRYHQHLQ K L L I R K 0 1 0 1 0 0 1 2 0 1 4 0 1 0 1 0 2 0 0 0 0 0 14 0 1527.8331 A0A090N7X1;A0A090N7Y2;Q9UG63 A0A090N7X1 442 455 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 9.1438E-05 70.942 1 1.6825 1.7265 NaN 1 Median 1.6825 1.7265 NaN 1 0 Median NaN NaN NaN 0 0 Median 10102000 4957700 5144200 10102000 4957700 5144200 0 0 0 8434 455 8625 22426 35207 35207 321 1 LLTLEVPGVTESRPSVLR ESVPMTWDPVDQNPRLLTLEVPGVTESRPS LEVPGVTESRPSVLRGDHLFALLSSETHQE R L L L R G 0 2 0 0 0 0 2 1 0 0 4 0 0 0 2 2 2 0 0 3 0 0 18 1 1965.1259 B7Z700;Q5JR04;Q9HCE1;Q9H8T8 B7Z700 314 331 MOV10 Putative helicase MOV-10 yes no 3 0.00037547 40.515 2 2 1.2908 1.2976 26.644 4 Median 1.4395 1.5863 0.44226 2 0 Median 1.1371 1.0068 7.9158 2 0 Median 49460000 19258000 30202000 40016000 15577000 24440000 9444000 3682000 5762000 8435 1102 8626 22427;22428;22429;22430 35208;35209;35210;35211;35212 35210 5 LLTLPNGER PEWVENLNSVLDDNKLLTLPNGERLSLPPN VLDDNKLLTLPNGERLSLPPNVRIMFEVQD K L L E R L 0 1 1 0 0 0 1 1 0 0 3 0 0 0 1 0 1 0 0 0 0 0 9 0 1011.5713 Q14204 Q14204 2324 2332 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.018019 60.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4009100 0 4009100 4009100 0 4009100 0 0 0 8436 1729 8627 22431 35213 35213 1 LLTQGFTNWNK EAESLNDEELEEKEKLLTQGFTNWNKRDFN EKEKLLTQGFTNWNKRDFNQFIKANEKWGR K L L N K R 0 0 2 0 0 1 0 1 0 0 2 1 0 1 0 0 2 1 0 0 0 0 11 0 1320.6826 O60264;B7ZAX9;B4DZC0 O60264 837 847 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.002424 71.451 2 5.7204 4.6448 NaN 1 Median NaN NaN NaN 0 0 Median 5.7204 4.6448 NaN 1 0 Median 47733000 4305900 43427000 0 0 0 47733000 4305900 43427000 8437 1391 8628 22432;22433 35214;35215;35216 35214 3 LLTQHENIK IASEDMPNTLTEAEKLLTQHENIKNEIDNY LTEAEKLLTQHENIKNEIDNYEEDYQKMRD K L L I K N 0 0 1 0 0 1 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1094.6084 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1014 1022 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.0010447 90.761 3 1.2587 1.2676 10.417 3 Median 1.2587 1.2676 10.417 3 0 Median NaN NaN NaN 0 0 Median 64923000 28564000 36359000 64923000 28564000 36359000 0 0 0 8438 415 8629 22434;22435;22436 35217;35218;35219 35219 3 LLTQMESEK EEKTLFSCWKSENEKLLTQMESEKENLQSK KSENEKLLTQMESEKENLQSKINHLETCLK K L L E K E 0 0 0 0 0 1 2 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 9 0 1077.5376 P49454 P49454 629 637 CENPF Centromere protein F yes yes 2 0.019767 48.794 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8439 1581 8630 22437 35220 35220 1362 1 LLTSFLPAQLLR ATGNRWCSWSLSQARLLTSFLPAQLLRLYQ QARLLTSFLPAQLLRLYQLMLFTLPGTPVF R L L L R L 1 1 0 0 0 1 0 0 0 0 5 0 0 1 1 1 1 0 0 0 0 0 12 0 1370.8286 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599;H0YFX4 B4E2Z3 321 332 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.0028278 57.598 2 1.411 1.4335 5.1468 2 Median 1.411 1.4335 5.1468 2 0 Median NaN NaN NaN 0 0 Median 12937000 5036700 7899900 12937000 5036700 7899900 0 0 0 8440 1072 8631 22438;22439 35221;35222;35223 35223 3 LLTSQCGAAEEEFVQR LSDLDYMQFIRLLEKLLTSQCGAAEEEFVQ LTSQCGAAEEEFVQRFRRSVTLESKKQLIE K L L Q R F 2 1 0 0 1 2 3 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 16 0 1836.8676 Q86WV4;P82933 Q86WV4 134 149 MRPS9 28S ribosomal protein S9, mitochondrial yes no 2 1.3634E-12 111.12 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7148600 0 7148600 7148600 0 7148600 0 0 0 8441 1670 8632 22440 35224 35224 1 LLTSYGFIQCSER NGTSAALRETGVIVKLLTSYGFIQCSERQA VKLLTSYGFIQCSERQARLFFHCSQYNGNL K L L E R Q 0 1 0 0 1 1 1 1 0 1 2 0 0 1 0 2 1 0 1 0 0 0 13 0 1572.7606 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLD4;E9PKN4 Q9GZV0 33 45 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 9.1005E-09 106.35 2 2 1.7169 2.0425 19.355 3 Plateau 2.016 2.044 NaN 1 0 Median 1.7048 1.462 0.91586 2 0 Median 34248000 9066600 25182000 27796000 6492400 21304000 6451900 2574300 3877600 8442 42 8633 22441;22442;22443;22444 35225;35226;35227;35228;35229;35230;35231;35232 35226 8 LLTTILHSDGDLTEQGK GMKNNHSKSGTSTLRLLTTILHSDGDLTEQ TTILHSDGDLTEQGKISKPDMSRLRLAAGS R L L G K I 0 0 0 2 0 1 1 2 1 1 4 1 0 0 0 1 3 0 0 0 0 0 17 0 1839.9578 Q9NTI5;B7Z5S1 Q9NTI5 853 869 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.0077348 24.041 1 0.67486 0.55427 NaN 1 Median NaN NaN NaN 0 0 Median 0.67486 0.55427 NaN 1 0 Median 2409500 1440600 968930 0 0 0 2409500 1440600 968930 8443 2069 8634 22445 35233 35233 1 LLTWVIGTGSPR DENGPELLPRVAMLRLLTWVIGTGSPRLQV MLRLLTWVIGTGSPRLQVLASDTLTTLCAS R L L P R L 0 1 0 0 0 0 0 2 0 1 2 0 0 0 1 1 2 1 0 1 0 0 12 0 1298.7347 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1043 1054 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.03653 45.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4829400 0 4829400 4829400 0 4829400 0 0 0 8444 1205 8635 22446 35234 35234 1 LLVACCLADIFR LASEFFLRNPNKDVRLLVACCLADIFRIYA DVRLLVACCLADIFRIYAPEAPYTSHDKLK R L L F R I 2 1 0 1 2 0 0 0 0 1 3 0 0 1 0 0 0 0 0 1 0 0 12 0 1449.7472 G1UI16;Q29RF7;H0Y9L9;Q9NTI5;B7Z5S1 G1UI16 88 99 PDS5A;PDS5B Sister chromatid cohesion protein PDS5 homolog A;Sister chromatid cohesion protein PDS5 homolog B no no 2 0.0029259 57.348 2 0.96039 1.0371 NaN 1 Median 0.96039 1.0371 NaN 1 0 Median NaN NaN NaN 0 0 Median 5492700 4395000 1097800 5492700 4395000 1097800 0 0 0 8445 1270;2069 8636 22447;22448 35235;35236 35235 2 LLVAGSEDGGVQLFDISGR FKDTAYCATFRQDGRLLVAGSEDGGVQLFD GSEDGGVQLFDISGRAPLRQFEGHTKAVHT R L L G R A 1 1 0 2 0 1 1 4 0 1 3 0 0 1 0 2 0 0 0 2 0 0 19 0 1931.9953 Q8TED0;H0Y8P4 Q8TED0 94 112 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 1.1279E-17 124.45 2 2 1.0906 1.1361 5.7919 4 Linear 0.99941 1.1302 1.2246 2 0 Median 1.1899 1.0249 1.8707 2 0 Median 262350000 123590000 138760000 191790000 91194000 100600000 70559000 32394000 38165000 8446 1936 8637 22449;22450;22451;22452 35237;35238;35239;35240;35241;35242;35243;35244 35244 8 LLVALGTLISDDSNAVQLAK STILEVVQDLEATFRLLVALGTLISDDSNA GTLISDDSNAVQLAKSLGVDSQIKKYSSVS R L L A K S 3 0 1 2 0 1 0 1 0 1 5 1 0 0 0 2 1 0 0 2 0 0 20 0 2040.1467 Q9Y263 Q9Y263 745 764 PLAA Phospholipase A-2-activating protein yes yes 2 0.018865 34.685 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2689500 0 2689500 2689500 0 2689500 0 0 0 8447 2123 8638 22453 35245 35245 1 LLVATSVAAR DRDSIINDFKNGTCKLLVATSVAARGLDVK NGTCKLLVATSVAARGLDVKHLILVVNYSC K L L A R G 3 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 10 0 999.60768 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 672 681 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0052298 60.436 1 2 0.8731 0.86717 62.111 2 Median 1.2319 1.3454 NaN 1 0 Median 0.6188 0.55894 NaN 1 0 Median 42097000 22201000 19896000 38372000 19350000 19022000 3725200 2851200 874010 8448 511 8639 22454;22455;22456 35246;35247;35248 35246 3 LLVDINK QKIEELKLSASNQDKLLVDINKNLWEKMRH LSASNQDKLLVDINKNLWEKMRHCSDKELK K L L N K N 0 0 1 1 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 813.496 Q8NG31;H0YCZ2;H0YEY7 Q8NG31 1970 1976 CASC5 Protein CASC5 yes no 2 0.018704 95.793 1 1.0004 1.0129 NaN 1 Median 1.0004 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median 27597000 13134000 14463000 27597000 13134000 14463000 0 0 0 8449 1928 8640 22457 35249 35249 1 LLVDVDESTLSPEEQK NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ LVDVDESTLSPEEQKERKIMKLLLKIKNGT K L L Q K E 0 0 0 2 0 1 3 0 0 0 3 1 0 0 1 2 1 0 0 2 0 0 16 0 1800.8993 O75533;Q7Z497;A0JLT9;Q32Q20;A0PJH5 O75533 478 493 SF3B1 Splicing factor 3B subunit 1 yes no 2 4.0088E-06 80.469 1 1 0.69581 0.56398 NaN 1 Median NaN NaN NaN 0 0 Median 0.69581 0.56398 NaN 1 0 Median 10242000 9254200 987690 7511600 7511600 0 2730300 1742600 987690 8450 1408 8641 22458;22459 35250;35251;35252 35250 3 LLVEFAR PGGHQTVLFSATLPKLLVEFARAGLTEPVL LFSATLPKLLVEFARAGLTEPVLIRLDVDT K L L A R A 1 1 0 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 7 0 846.49634 Q8TDD1;F8VRX4 Q8TDD1 284 290 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.032902 64.803 1 1 0.90348 0.98857 NaN 1 Median 0.90348 0.98857 NaN 1 0 Median NaN NaN NaN 0 0 Median 36141000 17437000 18703000 33799000 17437000 16361000 2341700 0 2341700 8451 1933 8642 22460;22461 35253;35254 35253 2 LLVELIR LKSWQRLRHDLERARLLVELIRKREKLKRE RHDLERARLLVELIRKREKLKRETIKVQQI R L L I R K 0 1 0 0 0 0 1 0 0 1 3 0 0 0 0 0 0 0 0 1 0 0 7 0 854.55894 P55201 P55201 603 609 BRPF1 Peregrin yes yes 2 0.026166 88.35 2 0.98948 1.0035 2.9715 2 Median 0.98948 1.0035 2.9715 2 0 Median NaN NaN NaN 0 0 Median 25549000 13781000 11769000 25549000 13781000 11769000 0 0 0 8452 1616 8643 22462;22463 35255;35256 35255 2 LLVGSEDYGR FRDMDDEESWIKEKKLLVGSEDYGRDLTGV IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL K L L G R D 0 1 0 1 0 0 1 2 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1107.556 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16;Q14917 A0A0D9SF54 1770 1779 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.00041053 87.308 1 1 1.6317 1.6876 NaN 1 Median 1.6317 1.6876 NaN 1 0 Median NaN NaN NaN 0 0 Median 23661000 8497700 15163000 21690000 8497700 13192000 1971300 0 1971300 8453 523 8644 22464;22465 35257;35258;35259 35257 3 LLVLDPAQR KAYVRDPYALDLIDKLLVLDPAQRIDSDDA LDLIDKLLVLDPAQRIDSDDALNHDFFWSD K L L Q R I 1 1 0 1 0 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 9 0 1023.6077 B5BU53;B2R9L6;A0A024R880;P50750 B5BU53 295 303 CDK9 Cyclin-dependent kinase 9 yes no 2 0.003213 74.127 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8454 243 8645 22466 35260 35260 1 LLVLESFLYK APQSLEFLRTPFGGRLLVLESFLYKQEKAV PFGGRLLVLESFLYKQEKAVGDKVYWKCRQ R L L Y K Q 0 0 0 0 0 0 1 0 0 0 4 1 0 1 0 1 0 0 1 1 0 0 10 0 1223.7166 Q4VC44 Q4VC44 125 134 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes yes 2 0.00086964 79.906 2 2 1.1678 1.0448 4.2508 4 Median 1.0112 1.0231 1.4954 2 0 Median 1.3683 1.0862 4.0218 2 0 Median 22502000 9364100 13138000 14143000 5812800 8330300 8358800 3551300 4807500 8455 1781 8646 22467;22468;22469;22470 35261;35262;35263;35264;35265;35266;35267;35268;35269 35263 9 LLVPTQFVGAIIGK PGSVSKQKPCDLPLRLLVPTQFVGAIIGKE RLLVPTQFVGAIIGKEGATIRNITKQTQSK R L L G K E 1 0 0 0 0 1 0 2 0 2 2 1 0 1 1 0 1 0 0 2 0 0 14 0 1454.8861 O00425 O00425 200 213 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 3.4472E-09 117.7 4 1.728 1.7855 52.807 3 Plateau 1.728 1.7855 52.807 3 0 Plateau NaN NaN NaN 0 0 Median 77550000 36171000 41378000 77550000 36171000 41378000 0 0 0 8456 1364 8647 22471;22472;22473;22474 35270;35271;35272;35273;35274;35275 35274 5 LLVPTQYVGAIIGK AGAPAKQQQVDIPLRLLVPTQYVGAIIGKE RLLVPTQYVGAIIGKEGATIRNITKQTQSK R L L G K E 1 0 0 0 0 1 0 2 0 2 2 1 0 0 1 0 1 0 1 2 0 0 14 0 1470.881 Q9NZI8;D3DTW3 Q9NZI8 200 213 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 3.0789E-05 96.015 2 2 2.3468 2.192 35.203 4 Median 2.6985 2.8773 0.63241 2 0 Median 1.9486 1.5742 8.9747 2 0 Median 83600000 24078000 59522000 68590000 18775000 49815000 15010000 5303500 9706800 8457 2087 8648 22475;22476;22477;22478 35276;35277;35278;35279;35280;35281;35282 35278 7 LLVQTSVQAK VPTQVVQQVQGTQQRLLVQTSVQAKPGHVS GTQQRLLVQTSVQAKPGHVSPLQLTNIQVP R L L A K P 1 0 0 0 0 2 0 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1085.6445 P22670 P22670 145 154 RFX1 MHC class II regulatory factor RFX1 yes yes 2 0.036959 40.002 1 1.0992 0.91007 NaN 1 Median NaN NaN NaN 0 0 Median 1.0992 0.91007 NaN 1 0 Median 1675200 717880 957350 0 0 0 1675200 717880 957350 8458 1509 8649 22479 35283 35283 1 LLVSASQDGK HLAKIYAMHWGTDSRLLVSASQDGKLIIWD GTDSRLLVSASQDGKLIIWDSYTTNKVHAI R L L G K L 1 0 0 1 0 1 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1016.5502 C9JIS1;C9JXA5;Q6FHM2;P62879;C9JZN1;E7EP32;C9JD14;B1AKQ8;F6X3N5;F6UT28;F5H8J8;F5H100;F5H0S8;Q59G26;E9PCP0;F1T0G5;F1T0G4;B2R6K4;A8K3F6;A0A024R056;Q9HAV0;P62873;P16520 C9JIS1 69 78 GNB2;GNB4;GNB1;GNB3 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 yes no 2 5.006E-06 108.98 1 1.229 1.3531 NaN 1 Median 1.229 1.3531 NaN 1 0 Median NaN NaN NaN 0 0 Median 42901000 20361000 22541000 42901000 20361000 22541000 0 0 0 8459 1135 8650 22480 35284;35285 35284 2 LLVSGSSDSTLK HVAAVYQIAWSADSRLLVSGSSDSTLKVWD DSRLLVSGSSDSTLKVWDVKAQKLAMDLPG R L L L K V 0 0 0 1 0 0 0 1 0 0 3 1 0 0 0 4 1 0 0 1 0 0 12 0 1205.6503 B4E074;Q9NVX2;A0A0A0MRH0;B4E303;K7EN33 B4E074 404 415 NLE1 Notchless protein homolog 1 yes no 2 0.00060196 68.557 2 1 1.5437 1.5761 22.086 3 Median 1.5454 1.5894 1.1837 2 0 Median 1.3957 1.0845 NaN 1 0 Median 64328000 25931000 38398000 60719000 24436000 36283000 3609300 1494600 2114700 8460 1060 8651 22481;22482;22483 35286;35287;35288;35289 35287 4 LLVTDMSDAEQYR KINKQHARRVYEILRLLVTDMSDAEQYRSY LRLLVTDMSDAEQYRSYRLDIKRRLISPYK R L L Y R S 1 1 0 2 0 1 1 0 0 0 2 0 1 0 0 1 1 0 1 1 0 0 13 0 1539.7239 O14929 O14929 337 349 HAT1 Histone acetyltransferase type B catalytic subunit yes yes 2 0.00075534 69.672 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2808900 0 2808900 2808900 0 2808900 0 0 0 8461 1368 8652 22484;22485 35290;35291 35290 1035 2 LLVVTDPR GTFTNQIQAAFREPRLLVVTDPRADHQPLT AAFREPRLLVVTDPRADHQPLTEASYVNLP R L L P R A 0 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 8 0 911.54402 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5 C9J9K3 121 128 RPSA;LOC388524 40S ribosomal protein SA yes no 2 0.012693 67.032 1 1 1.636 1.6126 35.908 2 Median 1.7926 2.0788 NaN 1 0 Median 1.493 1.251 NaN 1 0 Median 321200000 124120000 197080000 311050000 119970000 191090000 10148000 4155700 5992700 8462 119 8653 22486;22487 35292;35293 35293 2 LLVVYPWTQR AKVKVDEVGGEALGRLLVVYPWTQRFFESF EALGRLLVVYPWTQRFFESFGDLSSADAIL R L L Q R F 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 1 1 1 2 0 0 10 0 1273.7183 CON__Q3SX09;CON__P02070;Q4TZM4;Q9BWU5;Q8IZI0;Q8IUL9;Q6V0K9;Q6J1Z7;Q670S4;Q52MT0;Q4F786;Q3LR79;Q0Z944;E9NGZ5;D1MGQ0;B3VL05;B2M1S8;Q9BWV6;Q9GZL9;Q9UK54;B3VL86;E9PFT6;D9YZU5;C8C504;A0N071;Q14473;P68871;P02042;Q9UM85;Q3L3Q5;D5FZW3;E9M263;Q9BXA2;Q9UBV6;Q14484;A9YUX2;A8MUF7;B5ANL9;Q9UP81;F8W6P5;Q14477;Q14476;E9PEW8;B7UCU6;B3VL31;Q14474;Q9UNL6;E9PBW4;E7CYP2;D9YZU9;D9YZU8;D9YZU7;D3GKD9;D3GKD8;Q14403;P69892;P69891;P02100 CON__Q3SX09 86 95 HBB;HBD;beta-globin;HBE1;HBG2;HBG1 Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta;Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1;Hemoglobin subunit epsilon yes no 2 0.0038582 74.92 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70443000 70443000 0 53143000 53143000 0 17300000 17300000 0 + 8463 1172 8654 22488;22489;22490 35294;35295;35296 35294 3 LLWGLEGLPLTVSAVQGAHPVLR EALVAAVRCYDDLSRLLWGLEGLPLTVSAV PLTVSAVQGAHPVLRYTEVFPPTPVRPAFS R L L L R Y 2 1 0 0 0 1 1 3 1 0 6 0 0 0 2 1 1 1 0 3 0 0 23 0 2425.3846 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 672 694 NOL6 Nucleolar protein 6 yes no 3 1.603E-09 73.405 2 2 1.0972 1.0684 18.506 4 Median 0.90162 0.95369 4.5949 2 0 Median 1.4677 1.2723 13.242 2 0 Median 203890000 90750000 113140000 70604000 36715000 33889000 133290000 54035000 79250000 8464 2038 8655 22491;22492;22493;22494 35297;35298;35299;35300;35301;35302;35303;35304 35302 8 LLWHGSR ECQRYKPFKQLHNRRLLWHGSRTTNFAGIL FKQLHNRRLLWHGSRTTNFAGILSQGLRIA R L L S R T 0 1 0 0 0 0 0 1 1 0 2 0 0 0 0 1 0 1 0 0 0 0 7 0 867.47152 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 859 865 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.028306 72.138 1 0.90119 1.0166 NaN 1 Median 0.90119 1.0166 NaN 1 0 Median NaN NaN NaN 0 0 Median 46907000 23494000 23412000 46907000 23494000 23412000 0 0 0 8465 139 8656 22495 35305 35305 1 LLYDLADQLHAAVGASR VVSGGRGLKSGENFKLLYDLADQLHAAVGA YDLADQLHAAVGASRAAVDAGFVPNDMQVG K L L S R A 4 1 0 2 0 1 0 1 1 0 4 0 0 0 0 1 0 0 1 1 0 0 17 0 1811.953 A0A0S2Z3L0;P13804;H0YL12;H0YK49;H0YNX6 A0A0S2Z3L0 233 249 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 3 0.00277 47.223 1 4.9402 5.4074 NaN 1 Median 4.9402 5.4074 NaN 1 0 Median NaN NaN NaN 0 0 Median 33121000 4839400 28281000 33121000 4839400 28281000 0 0 0 8466 553 8657 22496 35306 35306 0 LLYNRPGTVSSLK FLSKKKTDELRNLHKLLYNRPGTVSSLKKN HKLLYNRPGTVSSLKKNVGQFSGFPFEKGS K L L L K K 0 1 1 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 1 1 0 0 13 1 1446.8195 B4DNW3;P35659;B4DFG0;D6RDA2;D6R9L5 P35659 112 124 DEK Protein DEK no no 2;3 2.6434E-23 181.31 4 3 0.62884 0.70951 10.846 7 Median 0.59371 0.71938 14.988 4 0 Median 0.80754 0.70593 3.2035 3 0 Plateau 3755600000 2380200000 1375400000 3580000000 2283300000 1296700000 175620000 96883000 78734000 8467 1546;1018 8658 22497;22498;22499;22500;22501;22502;22503 35307;35308;35309;35310;35311;35312;35313;35314;35315;35316;35317;35318;35319;35320;35321 35314 15 LLYNRPGTVSSLKK FLSKKKTDELRNLHKLLYNRPGTVSSLKKN KLLYNRPGTVSSLKKNVGQFSGFPFEKGSV K L L K K N 0 1 1 0 0 0 0 1 0 0 3 2 0 0 1 2 1 0 1 1 0 0 14 2 1574.9144 B4DNW3;P35659;B4DFG0;D6RDA2;D6R9L5 P35659 112 125 DEK Protein DEK no no 3 0.046513 18.596 2 0.82163 0.82513 5.1482 2 Median NaN NaN NaN 0 0 Median 0.82163 0.82513 5.1482 2 0 Median 15313000 7381200 7931600 0 0 0 15313000 7381200 7931600 8468 1546;1018 8659 22504;22505 35322;35323 35322 2 LLYPPETGLFLVR MPWFHGKITREQAERLLYPPETGLFLVRES ERLLYPPETGLFLVRESTNYPGDYTLCVSC R L L V R E 0 1 0 0 0 0 1 1 0 0 4 0 0 1 2 0 1 0 1 1 0 0 13 0 1516.8654 B4DMZ0;Q53EL3;B5BU52;B2R6Q4;A8K3B6;P41240;H3BU69;H3BUM9 B4DMZ0 16 28 CSK Non-specific protein-tyrosine kinase;Tyrosine-protein kinase CSK yes no 2 0.0030055 51.445 1 1.9497 1.9538 NaN 1 Median 1.9497 1.9538 NaN 1 0 Median NaN NaN NaN 0 0 Median 11322000 3588200 7734200 11322000 3588200 7734200 0 0 0 8469 720 8660 22506 35324 35324 1 LLYSVQRPLHEFITAVQSR CIARSFRKQPEEGLRLLYSVQRPLHEFITA VQRPLHEFITAVQSRHTDTPVHRGVLSTLI R L L S R H 1 2 0 0 0 2 1 0 1 1 3 0 0 1 1 2 1 0 1 2 0 0 19 1 2256.2379 Q86XI2;B3KRQ2;B4DHE5 Q86XI2 979 997 NCAPG2 Condensin-2 complex subunit G2 yes no 4 0.0011847 32.565 1 3.0915 2.8793 NaN 1 Median NaN NaN NaN 0 0 Median 3.0915 2.8793 NaN 1 0 Median 31227000 12200000 19028000 0 0 0 31227000 12200000 19028000 8470 1887 8661 22507 35325 35325 1 LLYTFPGWK SEQGSLQLWNVKSNKLLYTFPGWKVGVTAL NVKSNKLLYTFPGWKVGVTALQQAPAVDVV K L L W K V 0 0 0 0 0 0 0 1 0 0 2 1 0 1 1 0 1 1 1 0 0 0 9 0 1123.6066 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 183 191 WDR36 WD repeat-containing protein 36 yes no 2 0.0014644 85.064 2 3 0.85911 0.91835 1.8325 3 Median 0.83608 0.90688 1.7772 2 0 Median 1.1293 0.92808 NaN 1 0 Median 106440000 53953000 52485000 91863000 49625000 42238000 14576000 4328300 10248000 8471 486 8662 22508;22509;22510;22511;22512 35326;35327;35328;35329;35330;35331;35332 35327 7 LLYVTPEK TNIYLQLSKKDPIIKLLYVTPEKICASNRL KKDPIIKLLYVTPEKICASNRLISTLENLY K L L E K I 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 0 1 0 1 1 0 0 8 0 961.54843 B2RAN0;P54132;H0YNU5;B7ZKN7;B7Z2X2 B2RAN0 762 769 BLM Bloom syndrome protein yes no 2 0.022432 57.177 2 0.9821 0.99677 57.595 2 Median 0.9821 0.99677 57.595 2 0 Median NaN NaN NaN 0 0 Median 23984000 9628800 14355000 23984000 9628800 14355000 0 0 0 8472 873 8663 22513;22514 35333;35334 35334 2 LMAEDEEGYR QKKENERIEKERMRRLMAEDEEGYRKLIDQ ERMRRLMAEDEEGYRKLIDQKKDKRLAYLL R L M Y R K 1 1 0 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 10 0 1211.5129 A7E2E1;Q9HBD4;B9EGQ8;P51532;Q59FZ6;A5D6X0;P51531;A0A0U1RQZ9;F6VDE0;B4DK35 A7E2E1 530 539 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.0015826 66.27 2 0.64839 0.6479 NaN 1 Median 0.64839 0.6479 NaN 1 0 Median NaN NaN NaN 0 0 Median 11419000 3943300 7476200 11419000 3943300 7476200 0 0 0 8473 695;1595 8664 22515;22516 35335;35336 35335 537 2 LMAEDEEGYRK QKKENERIEKERMRRLMAEDEEGYRKLIDQ RMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ R L M R K L 1 1 0 1 0 0 3 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 11 1 1339.6078 A7E2E1;Q9HBD4;B9EGQ8;P51532;Q59FZ6;A5D6X0;P51531;A0A0U1RQZ9;F6VDE0;B4DK35 A7E2E1 530 540 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2;3 0.00041641 93.649 2 0.91015 1.0125 26.211 2 Median 0.91015 1.0125 26.211 2 0 Median NaN NaN NaN 0 0 Median 19301000 9467400 9833600 19301000 9467400 9833600 0 0 0 8474 695;1595 8665 22517;22518 35337;35338;35339 35337 537 3 LMALYVASHYK TLFCYHKASEVFLQRLMALYVASHYKNSPN FLQRLMALYVASHYKNSPNDLQMLSDAPAH R L M Y K N 2 0 0 0 0 0 0 0 1 0 2 1 1 0 0 1 0 0 2 1 0 0 11 0 1294.6744 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 529 539 NAT10 N-acetyltransferase 10 no no 2;3 0.0019196 76.465 1 2 1.4422 1.2681 6.7734 2 Median 1.3364 1.3304 NaN 1 0 Median 1.5564 1.2088 NaN 1 0 Median 31329000 10373000 20956000 26238000 9012900 17225000 5090600 1359800 3730800 8475 2023;1687 8666;8667 22519;22520;22521 35340;35341;35342;35343 35341 1503 4 LMATLR MFRTVGQLYKEQLAKLMATLRNTNPNFVRC QLYKEQLAKLMATLRNTNPNFVRCIIPNHE K L M L R N 1 1 0 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 6 0 703.40508 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;P35580 A0A024R1N1 657 662 MYH9;MYH10 Myosin-9;Myosin-10 no no 2 0.037106 48.174 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14588000 0 14588000 14588000 0 14588000 0 0 0 8476 81;1544 8668 22522 35344 35344 63 1 LMATMFQNLFPSINVHK LLVLNSFGPHGMHVKLMATMFQNLFPSINV ATMFQNLFPSINVHKVNLNTIKRCLLIDYN K L M H K V 1 0 2 0 0 1 0 0 1 1 2 1 2 2 1 1 1 0 0 1 0 0 17 0 1990.0169 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3 A0A0A6YYI3 155 171 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 3 1.0724E-05 73.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16327000 0 16327000 16327000 0 16327000 0 0 0 8477 493 8669 22523 35345 35345 339;340 1 LMDGEEPLPMLPSYK IPNFDVREIVNNIRRLMDGEEPLPMLPSYK LMDGEEPLPMLPSYKNFKGTIEELAPNQYV R L M Y K N 0 0 0 1 0 0 2 1 0 0 3 1 2 0 3 1 0 0 1 0 0 0 15 0 1718.8259 P11388 P11388 879 893 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.0927E-05 90.614 2 5 1.1055 0.86215 61.015 5 Median 1.4696 1.6846 0.25322 2 0 Median 0.62381 0.50323 31.723 3 0 Median 413650000 168560000 245090000 365700000 140610000 225090000 47957000 27954000 20004000 8478 1471 8670;8671 22524;22525;22526;22527;22528;22529;22530 35346;35347;35348;35349;35350;35351;35352;35353;35354;35355 35354 1202;1203 10 LMEEIMSEK VDVCHDVEKDEKLIRLMEEIMSEKENKTIV DEKLIRLMEEIMSEKENKTIVFVETKRRCD R L M E K E 0 0 0 0 0 0 3 0 0 1 1 1 2 0 0 1 0 0 0 0 0 0 9 0 1108.5144 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3QSF1 B4DN41 321 329 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.017015 59.153 1 2.936 2.9323 NaN 1 Median 2.936 2.9323 NaN 1 0 Median NaN NaN NaN 0 0 Median 15118000 3794900 11323000 15118000 3794900 11323000 0 0 0 8479 1009 8672 22531 35356 35356 796;797 0 LMEFLCNMDNK TAPGPIHLLELCDQKLMEFLCNMDNKDLVW CDQKLMEFLCNMDNKDLVWLEEIQEEAERM K L M N K D 0 0 2 1 1 0 1 0 0 0 2 1 2 1 0 0 0 0 0 0 0 0 11 0 1413.6091 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 19 29 INCENP Inner centromere protein yes no 2 0.0022575 64.04 4 1.5663 1.6026 4.6453 4 Median 1.5663 1.6026 4.6453 4 0 Median NaN NaN NaN 0 0 Median 89361000 36194000 53167000 89361000 36194000 53167000 0 0 0 8480 2059 8673 22532;22533;22534;22535 35357;35358;35359;35360;35361 35358 1889;1890 4 LMELHGEGSSSGK RKVKMLKKPKFELGKLMELHGEGSSSGKAT GKLMELHGEGSSSGKATGDETGAKVERADG K L M G K A 0 0 0 0 0 0 2 3 1 0 2 1 1 0 0 3 0 0 0 0 0 0 13 0 1330.6187 Q6NXR8;A8K4W0;P61247;D6RG13;D6RAT0;H0Y9Y4;D6R9B6 Q6NXR8 228 240 RPS3A 40S ribosomal protein S3a yes no 2;3 5.1508E-39 181.68 5 2 1.2595 1.4204 35.874 7 Median 1.3235 1.4611 37.348 5 0 Median 1.0687 0.86172 0.5964 2 0 Median 313870000 139000000 174870000 300080000 131830000 168250000 13791000 7171000 6619900 8481 742 8674;8675 22536;22537;22538;22539;22540;22541;22542 35362;35363;35364;35365;35366;35367;35368;35369;35370;35371;35372;35373 35363 578 12 LMELYER KEAERLAHEDAECEKLMELYERLEELDADK HEDAECEKLMELYERLEELDADKAEMRASR K L M E R L 0 1 0 0 0 0 2 0 0 0 2 0 1 0 0 0 0 0 1 0 0 0 7 0 952.4688 A0A090N7X1;A0A090N7Y2;Q9UG63;C9JHK9;C9JZV3 A0A090N7X1 189 195 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.017244 55.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6769300 0 6769300 6769300 0 6769300 0 0 0 8482 455 8676 22543 35374 35374 322 1 LMFEELR MQVEGVFYVNDALEKLMFEELRNACRGGGV YVNDALEKLMFEELRNACRGGGVGGFLPAM K L M L R N 0 1 0 0 0 0 2 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 7 0 936.47389 Q9Y3I0;B4DNA0;B4DNG5;B4DXF1 Q9Y3I0 45 51 RTCB tRNA-splicing ligase RtcB homolog yes no 2 0.054517 44.447 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8483 2137 8677 22544 35375 35375 1976 1 LMFSGLLVSSR EVSELRTGAAEGLAKLMFSGLLVSSRILSR GLAKLMFSGLLVSSRILSRLILLWYNPVTE K L M S R I 0 1 0 0 0 0 0 1 0 0 3 0 1 1 0 3 0 0 0 1 0 0 11 0 1208.6587 Q9BPX3;Q6NUR1 Q9BPX3 718 728 NCAPG Condensin complex subunit 3 yes no 2 0.00041914 79.974 2 3 1.2842 1.2207 19.816 5 Median 1.383 1.3925 18.628 2 0 Median 1.8514 1.5011 21.248 3 0 Plateau 41671000 17108000 24563000 18679000 8460500 10219000 22991000 8647400 14344000 8484 1995 8678;8679 22545;22546;22547;22548;22549 35376;35377;35378;35379;35380;35381;35382;35383;35384 35377 1827 8 LMITHIVNQNFK PPPPPAMTNEAGAPRLMITHIVNQNFKSYA APRLMITHIVNQNFKSYAGEKILGPFHKRF R L M F K S 0 0 2 0 0 1 0 0 1 2 1 1 1 1 0 0 1 0 0 1 0 0 12 0 1456.7861 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 82 93 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein no no 2;3 5.4616E-05 83.652 6 3 1.1516 1.228 9.3529 5 Median 1.0997 1.2463 2.4125 3 0 Median 1.31 1.0599 0.023589 2 0 Median 398850000 167950000 230890000 383480000 161680000 221800000 15361000 6268400 9092600 8485 2070;1136 8680;8681 22550;22551;22552;22553;22554;22555;22556;22557;22558 35385;35386;35387;35388;35389;35390;35391;35392;35393;35394;35395;35396;35397 35392 849 13 LMIWDTR LLHESLFGSVADDQKLMIWDTRSNTTSKPS GSVADDQKLMIWDTRSNTTSKPSHLVDAHT K L M T R S 0 1 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 0 0 0 0 7 0 933.47422 Q09028;H0YF10;H0YCT5;H0YDK2;Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP01;Q5JP02 Q6FHQ0 251 257 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.015954 64.757 2 1 0.82481 0.9514 9.0437 3 Median 0.81994 0.92364 4.1881 2 0 Median 1.2492 1.071 NaN 1 0 Median 132400000 74295000 58108000 126240000 71389000 54848000 6165500 2905700 3259900 8486 1771;1695 8682 22559;22560;22561 35398;35399;35400;35401;35402 35398 1527 5 LMLFGSIFR GYHLASLPVDVRIGKLMLFGSIFRCLDPAL DVRIGKLMLFGSIFRCLDPALTIAASLAFK K L M F R C 0 1 0 0 0 0 0 1 0 1 2 0 1 2 0 1 0 0 0 0 0 0 9 0 1082.5947 Q6P158;Q59G60;H7C109 Q6P158 1071 1079 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2 0.0070717 55.531 1 1.7502 1.896 NaN 1 Median 1.7502 1.896 NaN 1 0 Median NaN NaN NaN 0 0 Median 2651200 1044100 1607100 2651200 1044100 1607100 0 0 0 8487 1850 8683 22562 35403 35403 1699 1 LMLLLEVISGER TQIENIDEDFRDGLKLMLLLEVISGERLPK GLKLMLLLEVISGERLPKPERGKMRVHKIN K L M E R L 0 1 0 0 0 0 2 1 0 1 4 0 1 0 0 1 0 0 0 1 0 0 12 0 1371.7796 A0A0S2Z3G9;O43707;B4DSX0;B4E337;Q86TX4;A0A024R694;P12814;G3V5M4;B3W6H4;B4DRP5;G3V2N5;B7Z4V1;B2R8Y4;B4DZQ2;P35609;A0A087WSZ2;Q08043 A0A0S2Z3G9 84 95 ACTN4;ACTN1;MLL-ACTN4;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 2 7.9102E-05 86.624 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8488 548;401 8684 22563 35404 35404 290 1 LMMDPLSGQNR LVPLFEKAGPIWDLRLMMDPLSGQNRGYAF WDLRLMMDPLSGQNRGYAFITFCGKEAAQE R L M N R G 0 1 1 1 0 1 0 1 0 0 2 0 2 0 1 1 0 0 0 0 0 0 11 0 1260.5955 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5;B4DT28 B2R7W4 196 206 HNRNPR;HNRPR;DKFZp686A13234 Heterogeneous nuclear ribonucleoprotein R yes no 2 0.0046043 59.067 1 1.8938 1.9136 NaN 1 Median 1.8938 1.9136 NaN 1 0 Median NaN NaN NaN 0 0 Median 9940700 3293500 6647200 9940700 3293500 6647200 0 0 0 8489 855 8685 22564 35405 35405 667;668 1 LMMDPLTGLNR LVPLFEKAGPIWDLRLMMDPLTGLNRGYAF WDLRLMMDPLTGLNRGYAFVTFCTKEAAQE R L M N R G 0 1 1 1 0 0 0 1 0 0 3 0 2 0 1 0 1 0 0 0 0 0 11 0 1259.6366 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645 Q05CK9 229 239 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 0.00058029 68.557 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17018000 0 17018000 17018000 0 17018000 0 0 0 8490 864 8686 22565;22566 35406;35407 35407 677;678 2 LMNDMTAVALNYGIYK SVLDAAQIVGLNCLRLMNDMTAVALNYGIY MNDMTAVALNYGIYKQDLPSLDEKPRIVVF R L M Y K Q 2 0 2 1 0 0 0 1 0 1 2 1 2 0 0 0 1 0 2 1 0 0 16 0 1815.8899 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4 A0A024RDQ0 170 185 HSPH1 Heat shock protein 105 kDa yes no 2 0.0030159 53.569 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8491 390 8687 22567 35408 35408 282;283 1 LMNETTAVALAYGIYK SVMAAAQVAGLNCLRLMNETTAVALAYGIY MNETTAVALAYGIYKQDLPPLDEKPRNVVF R L M Y K Q 3 0 1 0 0 0 1 1 0 1 2 1 1 0 0 0 2 0 2 1 0 0 16 0 1756.907 B3KNM0;Q53ZP9;A0A140VKE7;B4DZR0;O95757;D6RJ96;E9PDE8;O14992;A0A087WTS8;A0A087WYC1;Q59GF8;V9HW33;B4DH02;P34932;B4DT47;B4DIZ3;B4DUS3;Q7KYN0 B3KNM0 170 185 HSPA4L;HS24/p52;HSPA4;HEL-S-5a;HS24/P52 Heat shock 70 kDa protein 4L;Heat shock 70 kDa protein 4 no no 2 3.6682E-07 89.403 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4264100 0 4264100 4264100 0 4264100 0 0 0 8492 624;404 8688 22568 35409 35409 294 1 LMQGDEICLR RIAYFTLPKTDSDMRLMQGDEICLRYKGDL DSDMRLMQGDEICLRYKGDLAPLWKGIGHV R L M L R Y 0 1 0 1 1 1 1 1 0 1 2 0 1 0 0 0 0 0 0 0 0 0 10 0 1233.5846 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 356 365 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.0072367 53.775 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4442200 0 4442200 4442200 0 4442200 0 0 0 8493 231 8689 22569 35410 35410 171 1 LMQLVDHR LIKVLEEANQAINPKLMQLVDHRGGGGGGG NQAINPKLMQLVDHRGGGGGGGKGGRSRYR K L M H R G 0 1 0 1 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 1 0 0 8 0 1010.5331 Q59F66;Q92841 Q59F66 550 557 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3 0.0087253 49.418 1 1.6498 1.6624 NaN 1 Median 1.6498 1.6624 NaN 1 0 Median NaN NaN NaN 0 0 Median 10634000 4233200 6400300 10634000 4233200 6400300 0 0 0 8494 1801 8690 22570 35411 35411 1666 1 LMQQQQEVAGLSK LLHQLESLAKDHRMKLMQQQQEVAGLSKQL MKLMQQQQEVAGLSKQLEHVMHFSKWAVSS K L M S K Q 1 0 0 0 0 4 1 1 0 0 2 1 1 0 0 1 0 0 0 1 0 0 13 0 1458.7501 A0A024R784;O15164;B4DYZ9;Q6ZSA6 A0A024R784 342 354 TRIM24 Transcription intermediary factor 1-alpha yes no 2 6.7854E-11 124.1 3 1.6622 1.6778 NaN 1 Median 1.6622 1.6778 NaN 1 0 Median NaN NaN NaN 0 0 Median 8090200 3328700 4761500 8090200 3328700 4761500 0 0 0 8495 217 8691 22571;22572;22573 35412;35413;35414;35415 35413 163 4 LMVNPFAYEEYRK MHGFFMDIRLYHKVKLMVNPFAYEEYRKDK VKLMVNPFAYEEYRKDKIRQKIEETRAQRV K L M R K D 1 1 1 0 0 0 2 0 0 0 1 1 1 1 1 0 0 0 2 1 0 0 13 1 1658.8127 Q9BSC4;B4DS83 Q9BSC4 414 426 NOL10 Nucleolar protein 10 yes no 3 4.6617E-05 80.96 1 1 1.6148 1.6049 15.688 2 Median 1.561 1.7931 NaN 1 0 Median 1.6705 1.4364 NaN 1 0 Median 28726000 10380000 18346000 26945000 9699300 17246000 1780900 680540 1100300 8496 2000 8692;8693 22574;22575 35416;35417 35416 1838 2 LNAFDQR SDFESGLKYITDVVKLNAFDQRHLDDINFD KYITDVVKLNAFDQRHLDDINFDVRFETFQ K L N Q R H 1 1 1 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 862.42972 O75691 O75691 1433 1439 UTP20 Small subunit processome component 20 homolog yes yes 2 0.031947 76.134 2 1 1.581 1.3185 NaN 1 Median NaN NaN NaN 0 0 Median 1.581 1.3185 NaN 1 0 Median 37281000 33116000 4164900 30629000 30629000 0 6651500 2486600 4164900 8497 1412 8694 22576;22577;22578 35418;35419;35420;35421 35418 4 LNALLHALNEVDPGDWQK DDDNTQNQEKEMLLRLNALLHALNEVDPGD LLHALNEVDPGDWQKFVKKGLKFRYQDHTF R L N Q K F 2 0 2 2 0 1 1 1 1 0 4 1 0 0 1 0 0 1 0 1 0 0 18 0 2032.0378 O60287 O60287 1415 1432 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 0.0088216 23.33 1 2 1.4349 1.2683 11.411 3 Median 1.2696 1.2683 NaN 1 0 Median 1.6007 1.2611 16.131 2 0 Median 18525000 7893300 10632000 9739300 4385200 5354100 8786200 3508100 5278000 8498 1392 8695 22579;22580;22581 35422;35423;35424 35422 3 LNATNIELATVQPGQNFHMFTK IKSSLIILKQVMEEKLNATNIELATVQPGQ LATVQPGQNFHMFTKEELEEVIKDI_____ K L N T K E 2 0 3 0 0 2 1 1 1 1 2 1 1 2 1 0 3 0 0 1 0 0 22 0 2473.2424 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 210 231 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 3 1.7363E-07 51.526 1 2.5602 2.879 NaN 1 Median 2.5602 2.879 NaN 1 0 Median NaN NaN NaN 0 0 Median 71002000 17770000 53232000 71002000 17770000 53232000 0 0 0 8499 595 8696 22582 35425 35425 455 1 LNDGNEYLFQAK VALDYKKKKHVFKLRLNDGNEYLFQAKDDE KLRLNDGNEYLFQAKDDEEMNTWIQAISSA R L N A K D 1 0 2 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1410.6779 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;B4DIF8 D6W5C0 2193 2204 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.5535E-06 111.06 1 2.1529 2.1167 NaN 1 Median 2.1529 2.1167 NaN 1 0 Median NaN NaN NaN 0 0 Median 8688400 3143800 5544600 8688400 3143800 5544600 0 0 0 8500 415 8697 22583 35426 35426 1 LNDGSQITYEK GKKVVQLDVRDNMVKLNDGSQITYEKCLIA NMVKLNDGSQITYEKCLIATGGTPRSLSAI K L N E K C 0 0 1 1 0 1 1 1 0 1 1 1 0 0 0 1 1 0 1 0 0 0 11 0 1266.6092 O95831;Q5RZA0;Q5RZ99 O95831 245 255 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 6.0402E-08 115.78 2 2 1.5344 1.3558 12.559 3 Median 1.5229 1.5565 NaN 1 0 Median 1.6287 1.2815 7.9691 2 0 Median 32730000 9642700 23088000 25309000 6711600 18597000 7421500 2931100 4490400 8501 1431 8698 22584;22585;22586;22587 35427;35428;35429;35430;35431 35428 5 LNDLEDALQQAK AEQRGENALKDAKNKLNDLEDALQQAKEDL KNKLNDLEDALQQAKEDLARLLRDYQELMN K L N A K E 2 0 1 2 0 2 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1356.6885 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 444 455 KRT1 Keratin, type II cytoskeletal 1 no no 2 2.9483E-210 284.47 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3652300000 3652300000 0 3355600000 3355600000 0 296720000 296720000 0 + 8502 1308;1309 8699 22588;22589;22590;22591 35432;35433;35434;35435;35436 35434 5 LNDLEEALQQAK AEQRGEHALKDARNKLNDLEEALQQAKEDL RNKLNDLEEALQQAKEDLARLLRDYQELMN K L N A K E 2 0 1 1 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1370.7042 CON__P35908;P35908 CON__P35908 448 459 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 4.9902E-185 276.58 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 283030000 283030000 0 238270000 238270000 0 44764000 44764000 0 + 8503 1166 8700 22592;22593;22594 35437;35438;35439 35438 3 LNDTIQLLVR KQMEDGHTLFDYEVRLNDTIQLLVRQSLVL DYEVRLNDTIQLLVRQSLVLPHSTKERDSE R L N V R Q 0 1 1 1 0 1 0 0 0 1 3 0 0 0 0 0 1 0 0 1 0 0 10 0 1183.6925 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 78 87 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 8.6078E-12 140.35 2 0.51997 0.53136 16.807 2 Median 0.51997 0.53136 16.807 2 0 Median NaN NaN NaN 0 0 Median 39826000 26246000 13580000 39826000 26246000 13580000 0 0 0 8504 406 8701 22595;22596 35440;35441;35442;35443 35441 4 LNDYIFSFDK VAYGCIKYADLSHNRLNDYIFSFDKMLDDR LSHNRLNDYIFSFDKMLDDRGNTAAYLLYA R L N D K M 0 0 1 2 0 0 0 0 0 1 1 1 0 2 0 1 0 0 1 0 0 0 10 0 1260.6027 P54136;B4DXW6 P54136 513 522 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 1.7472E-05 94.309 3 2 1.1108 0.86883 57.461 3 Median 2.0605 2.1481 NaN 1 0 Median 1.0215 0.80179 11.357 2 0 Median 34046000 8054100 25991000 24981000 3745400 21236000 9064100 4308700 4755400 8505 1609 8702 22597;22598;22599;22600;22601 35444;35445;35446;35447;35448;35449;35450;35451;35452 35449 9 LNEAQPSTIATSMR DTTSTELSVVESVFKLNEAQPSTIATSMRD KLNEAQPSTIATSMRDSLIDSLT_______ K L N M R D 2 1 1 0 0 1 1 0 0 1 1 0 1 0 1 2 2 0 0 0 0 0 14 0 1517.7508 P56537;A0A0U1RQV5 P56537 224 237 EIF6 Eukaryotic translation initiation factor 6 yes no 2 2.7363E-10 123.26 2 3 1.0416 1.1057 20.294 5 Median 1.0356 1.2096 0.38629 2 0 Median 1.2283 1.0526 21.87 3 0 Median 553440000 259030000 294420000 521770000 243320000 278450000 31669000 15701000 15969000 8506 1619 8703;8704 22602;22603;22604;22605;22606 35453;35454;35455;35456;35457;35458;35459 35454 1406 7 LNEFMAGFYIITNK RDSFRQAYEDLRKQRLNEFMAGFYIITNKL RLNEFMAGFYIITNKLKENYQMLTLGGDAE R L N N K L 1 0 2 0 0 0 1 1 0 2 1 1 1 2 0 0 1 0 1 0 0 0 14 0 1659.8331 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1132 1145 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.2332E-06 105.17 2 1 1.4685 1.5275 40.248 3 Plateau 1.441 1.4827 10.739 2 0 Median 0.94324 0.74771 NaN 1 0 Median 63532000 26939000 36593000 57150000 23339000 33811000 6382400 3599800 2782700 8507 2070 8705 22607;22608;22609 35460;35461;35462;35463 35461 1903 4 LNEGVVEFASYGDLK RQAGEVTFADAHRPKLNEGVVEFASYGDLK LNEGVVEFASYGDLKNAIEKLSGKEINGRK K L N L K N 1 0 1 1 0 0 2 2 0 0 2 1 0 1 0 1 0 0 1 2 0 0 15 0 1639.8094 A0A024R6D8;Q59EK7;Q13243;Q86U32 A0A024R6D8 144 158 SFRS5;SRSF5 Serine/arginine-rich splicing factor 5 yes no 2 4.346E-10 113.99 1 4 0.57478 0.62767 NaN 1 Median 0.57478 0.62767 NaN 1 0 Median NaN NaN NaN 0 0 Median 55979000 30763000 25215000 50738000 30763000 19974000 5241200 0 5241200 8508 202 8706 22610;22611;22612;22613;22614 35464;35465;35466;35467;35468;35469;35470;35471 35465 8 LNEIVGNEDTVSR GHYELPWVEKYRPVKLNEIVGNEDTVSRLE VKLNEIVGNEDTVSRLEVFAREGNVPNIII K L N S R L 0 1 2 1 0 0 2 1 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1444.7158 Q75MT5;B5BUD2;P35250;H7C5S7;H7C5P1;H7C5Q7;F8WC37;H7C5A0;H7C5G4 Q75MT5 47 59 RFC2 Replication factor C subunit 2 yes no 2 1.5142E-30 172.17 2 2 1.1589 1.0689 17.716 4 Median 1.1619 1.2295 5.3114 2 0 Median 1.0855 0.91678 7.2147 2 0 Median 77641000 31834000 45807000 65349000 25560000 39789000 12292000 6273800 6018200 8509 1079 8707 22615;22616;22617;22618 35472;35473;35474;35475;35476;35477 35473 6 LNELLVK IAAGLVDDPRAMVGRLNELLVKALERH___ DPRAMVGRLNELLVKALERH__________ R L N V K A 0 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 827.51165 Q5CAQ4;I3L0K7;K0A7K7;Q9BV61;Q59EK6;Q53G55;Q53FS6;A0A140VJY2;Q12931;I3L253 Q5CAQ4 484 490 TRAP1 Heat shock protein 75 kDa, mitochondrial yes no 2 0.05008 58.286 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3239400 0 3239400 3239400 0 3239400 0 0 0 8510 612 8708 22619 35478 35478 1 LNEQQSVLQR AEEEIKQEMNTLQQKLNEQQSVLQRIAAPN TLQQKLNEQQSVLQRIAAPNMKAMEKLESV K L N Q R I 0 1 1 0 0 3 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1213.6415 Q14683;G8JLG1;V9GY57 Q14683 1010 1019 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 7.5414E-10 134.77 2 2 1.0496 1.0152 20.023 4 Median 0.81399 0.87122 25.964 2 0 Median 1.2558 1.0653 11.142 2 0 Median 72040000 34454000 37586000 62494000 30262000 32233000 9545600 4192600 5353000 8511 1739 8709 22620;22621;22622;22623 35479;35480;35481;35482;35483;35484;35485;35486 35481 8 LNEQVTQEQPLK GFVQVTEICDAYTKKLNEQVTQEQPLKDLL TKKLNEQVTQEQPLKDLLHLPELFSPGMLV K L N L K D 0 0 1 0 0 3 2 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 12 0 1425.7464 Q14690;B4DH82;B4DES7 Q14690 123 134 PDCD11 Protein RRP5 homolog yes no 2 1.5542E-48 198.72 2 2 1.2728 1.1915 9.4654 4 Median 1.1568 1.3054 5.0258 2 0 Median 1.3916 1.1173 1.2093 2 0 Median 285060000 135490000 149580000 255780000 123090000 132690000 29284000 12400000 16884000 8512 1741 8710 22624;22625;22626;22627 35487;35488;35489;35490;35491;35492;35493;35494;35495;35496 35488 10 LNESTFDTQITK IVVDAIDVLKSRFTKLNESTFDTQITKKMG FTKLNESTFDTQITKKMGYYKILDVMYSRL K L N T K K 0 0 1 1 0 1 1 0 0 1 1 1 0 1 0 1 3 0 0 0 0 0 12 0 1395.6882 P78527 P78527 1858 1869 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.5026E-12 128.01 2 2 0.35074 0.28094 57.21 3 Median 0.64403 0.72829 NaN 1 0 Median 0.33753 0.27091 5.1397 2 0 Median 160090000 81007000 79081000 118020000 50375000 67646000 42067000 30632000 11435000 8513 1665 8711 22628;22629;22630;22631 35497;35498;35499;35500;35501;35502 35498 6 LNEVYEAVK ISPKKSKYMTPMQQKLNEVYEAVKNYTDKR TPMQQKLNEVYEAVKNYTDKRGRRLSAIFL K L N V K N 1 0 1 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 1063.555 Q86U86;E7EVG2;H0Y5B5;Q6IRX1 Q86U86 662 670 PBRM1 Protein polybromo-1 yes no 2 0.0013293 86.744 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19957000 19957000 0 19957000 19957000 0 0 0 0 8514 1883 8712 22632;22633 35503;35504;35505 35503 3 LNFEAAWDEVGDEFEK DLEVTVADHIQKVMKLNFEAAWDEVGDEFE NFEAAWDEVGDEFEKEETFTLSTIKTLEEA K L N E K E 2 0 1 2 0 0 4 1 0 0 1 1 0 2 0 0 0 1 0 1 0 0 16 0 1897.837 Q9Y678;B3KW21;Q8WUI6;H0Y8X7 Q9Y678 770 785 COPG1;COPG Coatomer subunit gamma-1 yes no 2 0.03675 36.284 1 1.8176 1.8363 NaN 1 Median 1.8176 1.8363 NaN 1 0 Median NaN NaN NaN 0 0 Median 8485500 3805500 4680000 8485500 3805500 4680000 0 0 0 8515 2151 8713 22634 35506 35506 0 LNFENTFLR RITTEKMLLQKEVEKLNFENTFLRLKLNNL QKEVEKLNFENTFLRLKLNNLNKKLIDIEA K L N L R L 0 1 2 0 0 0 1 0 0 0 2 0 0 2 0 0 1 0 0 0 0 0 9 0 1152.5928 Q562F6;B7Z7S9 Q562F6 89 97 SGOL2 Shugoshin-like 2 yes no 2 0.00071971 102.46 3 2 1.2945 1.2467 26.931 4 Median 0.91897 0.97406 9.8556 2 0 Median 1.8209 1.5337 4.2516 2 0 Median 59334000 31467000 27867000 48360000 27486000 20874000 10974000 3980900 6993000 8516 1795 8714 22635;22636;22637;22638;22639 35507;35508;35509;35510;35511;35512;35513;35514;35515 35510 9 LNGFQLENFTLK VTYSSKDQARQALDKLNGFQLENFTLKVAY LDKLNGFQLENFTLKVAYIPDEMAAQQNPL K L N L K V 0 0 2 0 0 1 1 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 12 0 1422.7507 O00425 O00425 139 150 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.00083818 75.294 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5246900 0 5246900 5246900 0 5246900 0 0 0 8517 1364 8715 22640;22641 35516;35517 35516 2 LNGLNEEIAR YMSNLESHSAILDQKLNGLNEEIARVELEC ILDQKLNGLNEEIARVELECETIKQENTRL K L N A R V 1 1 2 0 0 0 2 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1127.5935 A8K031;O14777;Q05DQ6 A8K031 328 337 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.0010535 84.213 2 1.0309 1.0338 NaN 1 Median 1.0309 1.0338 NaN 1 0 Median NaN NaN NaN 0 0 Median 23415000 13199000 10215000 23415000 13199000 10215000 0 0 0 8518 696 8716 22642;22643 35518;35519;35520 35520 3 LNGNLRPHGDNR PTKQDGSGVKGYEEKLNGNLRPHGDNRTAG EEKLNGNLRPHGDNRTAGRPGKENINDEPV K L N N R T 0 2 3 1 0 0 0 2 1 0 2 0 0 0 1 0 0 0 0 0 0 0 12 1 1361.6912 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 79 90 GATAD2B Transcriptional repressor p66-beta yes no 3 0.012723 36.32 1 0.69535 0.67915 NaN 1 Median 0.69535 0.67915 NaN 1 0 Median NaN NaN NaN 0 0 Median 2004700 1246700 758000 2004700 1246700 758000 0 0 0 8519 591 8717 22644 35521 35521 1 LNHLLK HPKNRECLLSAPRKKLNHLLKALETSKADL CLLSAPRKKLNHLLKALETSKADLESLLQT K L N L K A 0 0 1 0 0 0 0 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 6 0 736.45956 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 785 790 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.041831 106.29 1 0.97007 1.0776 NaN 1 Median 0.97007 1.0776 NaN 1 0 Median NaN NaN NaN 0 0 Median 59889000 30077000 29812000 59889000 30077000 29812000 0 0 0 8520 1887 8718 22645 35522 35522 1 LNHLSSSEDGCSTEITCETFNDFVR ECFTLRLLLEQILNKLNHLSSSEDGCSTEI CSTEITCETFNDFVRLFKQVTTAENLKDQT K L N V R L 0 1 2 2 2 0 3 1 1 1 2 0 0 2 0 4 3 0 0 1 0 0 25 0 2917.2495 Q9UDM8;A4D0P7;O43913;A8K8C0 Q9UDM8 80 104 ORC5L;ORC5 Origin recognition complex subunit 5 yes no 3 0.037147 12.939 2 1.2996 1.0955 12.909 2 Median NaN NaN NaN 0 0 Median 1.2996 1.0955 12.909 2 0 Median 6740300 2837600 3902700 0 0 0 6740300 2837600 3902700 8521 657 8719 22646;22647 35523;35524 35524 2 LNIDSIIQR ______________________________ MADLDKLNIDSIIQRLLEVRGSKPGKNVQL K L N Q R L 0 1 1 1 0 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1070.6084 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8VR82;A0A087WYY5 A0A024RBP2 7 15 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 2 4.0269E-34 190.26 2 2 2.4894 2.4868 10.154 4 Median 1.9766 2.2911 1.1924 2 0 Median 3.1428 2.7254 2.5601 2 0 Median 617470000 179900000 437570000 496350000 151430000 344920000 121120000 28472000 92646000 8522 343 8720 22648;22649;22650;22651 35525;35526;35527;35528;35529;35530;35531;35532;35533;35534;35535;35536 35530 12 LNIEELLK CMVEAWNFLRQHCNRLNIEELLKHMYEVCQ LRQHCNRLNIEELLKHMYEVCQEMGLMEDL R L N L K H 0 0 1 0 0 0 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 8 0 970.5699 Q8WYP5;B3KVE5 Q8WYP5 903 910 AHCTF1 Protein ELYS yes no 2 0.0022675 101.33 2 2 1.9797 1.7367 20.115 4 Median 1.4708 1.4753 0.78193 2 0 Median 2.6119 2.0861 3.6443 2 0 Median 71014000 25781000 45233000 50698000 20918000 29780000 20316000 4863200 15453000 8523 1945 8721 22652;22653;22654;22655 35537;35538;35539;35540;35541;35542;35543;35544 35538 8 LNIIIVAEGAIDK HLCRRLSETRTRGSRLNIIIVAEGAIDKNG SRLNIIIVAEGAIDKNGKPITSEDIKNLVV R L N D K N 2 0 1 1 0 0 1 1 0 4 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1367.8024 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162 A0A024R0Y5 257 269 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.0026901 68.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1243100 0 1243100 0 0 0 1243100 0 1243100 8524 61 8722 22656 35545 35545 1 LNILDTLSK AVPLALALISVSNPRLNILDTLSKFSHDAD SVSNPRLNILDTLSKFSHDADPEVSYNSIF R L N S K F 0 0 1 1 0 0 0 0 0 1 3 1 0 0 0 1 1 0 0 0 0 0 9 0 1015.5914 Q59EG8;Q13200;B4DM22;Q13041;H7C1H2 Q59EG8 709 717 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.001341 86.67 2 2.3867 2.4257 NaN 1 Median 2.3867 2.4257 NaN 1 0 Median NaN NaN NaN 0 0 Median 48841000 8536300 40305000 48841000 8536300 40305000 0 0 0 8525 1707 8723 22657;22658 35546;35547;35548 35547 3 LNIPAILR GQGIWALLGRITGQKLNIPAILRAPKERKP GRITGQKLNIPAILRAPKERKPSKKEGGTQ K L N L R A 1 1 1 0 0 0 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 0 8 0 908.58074 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 694 701 PHF14 PHD finger protein 14 yes no 2 0.0071364 84.244 2 2 1.0894 1.0438 33.265 4 Median 0.72308 0.77373 5.7719 2 0 Median 1.6245 1.3721 2.0992 2 0 Median 76037000 41117000 34920000 63701000 36717000 26984000 12336000 4400200 7935700 8526 590 8724 22659;22660;22661;22662 35549;35550;35551;35552;35553;35554;35555 35553 7 LNIRPLLR TLDELGIHLTKEELKLNIRPLLRLVCKKFF LTKEELKLNIRPLLRLVCKKFFGEFTGFVD K L N L R L 0 2 1 0 0 0 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 8 1 993.64473 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 361 368 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.00056427 111.01 2 0.93722 1.0355 0.44986 2 Median 0.93722 1.0355 0.44986 2 0 Median NaN NaN NaN 0 0 Median 49905000 24988000 24917000 49905000 24988000 24917000 0 0 0 8527 794 8725 22663;22664 35556;35557;35558;35559 35557 4 LNISFPATGCQK ______________________________ ______________________________ K L N Q K L 1 0 1 0 1 1 0 1 0 1 1 1 0 1 1 1 1 0 0 0 0 0 12 0 1334.6653 Q96DV6;A2A3R6;P62753;A2A3R7 Q96DV6 3 14 RPS6 40S ribosomal protein S6 yes no 2 4.3101E-18 145.99 2 2 1.087 1.1276 22.626 4 Median 0.76891 0.92405 3.6914 2 0 Median 1.5187 1.364 2.44 2 0 Median 8570700000 4419900000 4150800000 6464700000 3597300000 2867400000 2106000000 822540000 1283500000 8528 649 8726 22665;22666;22667;22668 35560;35561;35562;35563;35564;35565;35566;35567;35568;35569;35570;35571;35572;35573;35574;35575;35576;35577;35578;35579;35580 35567 21 LNIWGEAR LSKRPMPLSARGNSRLNIWGEARVGSELCA SARGNSRLNIWGEARVGSELCAGWEEQFEV R L N A R V 1 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 8 0 957.50321 Q6AHZ7;Q12789;Q6AWA4;H3BU55 Q6AHZ7 1175 1182 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.024775 62.464 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8626500 8626500 0 8626500 8626500 0 0 0 0 8529 1699 8727 22669 35581 35581 1 LNLAFVANLFNK RQFVTPADVVSGNPKLNLAFVANLFNKYPA NPKLNLAFVANLFNKYPALTKPENQDIDWT K L N N K Y 2 0 3 0 0 0 0 0 0 0 3 1 0 2 0 0 0 0 0 1 0 0 12 0 1362.766 H7C4N2;B4DG31;Q96HI1;B4DPW9;A0A0A0MSQ0;Q53GY0;P13797 H7C4N2 86 97 PLS3 Plastin-3 yes no 2 8.0253E-05 96.948 2 1.9204 2.0141 NaN 1 Median 1.9204 2.0141 NaN 1 0 Median NaN NaN NaN 0 0 Median 5674100 1659200 4014800 5674100 1659200 4014800 0 0 0 8530 480 8728 22670;22671 35582;35583;35584 35584 3 LNLDNVISVSIGAR MFSATFAYDVEQWCKLNLDNVISVSIGARN KLNLDNVISVSIGARNSAVETVEQELLFVG K L N A R N 1 1 2 1 0 0 0 1 0 2 2 0 0 0 0 2 0 0 0 2 0 0 14 0 1469.8202 Q9Y2R4;Q59H21;B3KM65 Q9Y2R4 366 379 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 1.8351E-05 97.911 2 2 0.85802 0.77879 13.973 4 Median 0.72322 0.72025 3.0416 2 0 Median 1.0433 0.89127 11.071 2 0 Median 32947000 17752000 15196000 17435000 10104000 7331700 15512000 7648100 7864000 8531 2126 8729 22672;22673;22674;22675 35585;35586;35587;35588;35589;35590 35585 6 LNLDSIIGR ______________________________ MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL K L N G R L 0 1 1 1 0 0 0 1 0 2 2 0 0 0 0 1 0 0 0 0 0 0 9 0 999.57129 P62136;A0A140VJS9;E9PMD7 P62136 7 15 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2 0.00022612 105.57 1 2 1.3895 1.1438 2.0891 3 Median 0.99296 1.1103 NaN 1 0 Median 1.4037 1.1499 0.74715 2 0 Median 66006000 31920000 34086000 44676000 23363000 21312000 21330000 8557000 12773000 8532 1632 8730 22676;22677;22678 35591;35592;35593;35594 35591 4 LNLEQGR SCDLYFVGASSEVYRLNLEQGRYLNPLQTD GASSEVYRLNLEQGRYLNPLQTDAAENNVC R L N G R Y 0 1 1 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 828.44537 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 161 167 NOL10 Nucleolar protein 10 yes no 2 1.2755E-06 153.88 2 1.0416 1.1778 1.6293 2 Median 1.0416 1.1778 1.6293 2 0 Median NaN NaN NaN 0 0 Median 167140000 79479000 87662000 167140000 79479000 87662000 0 0 0 8533 2000 8731 22679;22680 35595;35596;35597;35598 35597 4 LNLHYAVVSK NALDVYCPVQWEYGRLNLHYAVVSKRKILQ WEYGRLNLHYAVVSKRKILQLVATGAVRDW R L N S K R 1 0 1 0 0 0 0 0 1 0 2 1 0 0 0 1 0 0 1 2 0 0 10 0 1142.6448 Q53HS0;P47897;Q96AW5;B4DNN3;A0A1B0GVU9;H7C0R3;Q9H3A5;Q9BUZ3;B4DDN1;A0A1B0GTT3;A0A0U1RQQ5 Q53HS0 487 496 QARS Glutamine--tRNA ligase yes no 2 0.0051694 60.518 1 1.5555 1.5553 NaN 1 Median 1.5555 1.5553 NaN 1 0 Median NaN NaN NaN 0 0 Median 9767100 4288300 5478800 9767100 4288300 5478800 0 0 0 8534 1575 8732 22681 35599 35599 1 LNLIHSEISNLAGFEVEAIINPTNADIDLK GFTVLSTKSLFLGQKLNLIHSEISNLAGFE VEAIINPTNADIDLKDDLGNTLEKKGGKEF K L N L K D 3 0 4 2 0 0 3 1 1 5 4 1 0 1 1 2 1 0 0 1 0 0 30 0 3262.7085 O75367 O75367 197 226 H2AFY Core histone macro-H2A.1 yes yes 3 7.5874E-80 167.97 1 2 1.2839 1.3946 26.369 3 Plateau 1.2839 1.5139 NaN 1 0 Median 1.1883 0.99315 14.354 2 0 Median 866580000 386080000 480500000 704090000 316180000 387910000 162490000 69900000 92591000 8535 1401 8733 22682;22683;22684 35600;35601;35602;35603 35600 4 LNLLAHSRPPVPEWDISQDPPK LGPLTTLLEQGLGARLNLLAHSRPPVPEWD RPPVPEWDISQDPPKHKDSGTLTLGLLLRP R L N P K H 1 1 1 2 0 1 1 0 1 1 3 1 0 0 5 2 0 1 0 1 0 0 22 1 2508.3125 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 522 543 NOL6 Nucleolar protein 6 yes no 4 0.033963 12.677 2 1.5558 1.3011 3.9083 2 Median NaN NaN NaN 0 0 Median 1.5558 1.3011 3.9083 2 0 Median 9182900 3621500 5561400 0 0 0 9182900 3621500 5561400 8536 2038 8734 22685;22686 35604;35605 35605 2 LNLLDTCAVCHQNIQSR SRQGPDSERGGEAARLNLLDTCAVCHQNIQ LLDTCAVCHQNIQSRAPKLLPCLHSFCQRC R L N S R A 1 1 2 1 2 2 0 0 1 1 3 0 0 0 0 1 1 0 0 1 0 0 17 0 2040.9833 A0A024R784;O15164 A0A024R784 50 66 TRIM24 Transcription intermediary factor 1-alpha yes no 3 8.6502E-06 77.221 1 2 1.3968 1.2016 5.6196 2 Median NaN NaN NaN 0 0 Median 1.3968 1.2016 5.6196 2 0 Median 16151000 11385000 4766100 8171500 8171500 0 7979400 3213300 4766100 8537 217 8735 22687;22688;22689 35606;35607;35608;35609;35610;35611;35612 35606 7 LNLLGR RKYCQRPCDNLHLCKLNLLGRCNYSQSERN PCDNLHLCKLNLLGRCNYSQSERNLCKYSH K L N G R C 0 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 684.42826 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 90 95 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.03571 117.54 1 1.1109 1.13 NaN 1 Median 1.1109 1.13 NaN 1 0 Median NaN NaN NaN 0 0 Median 14925000 5948900 8976400 14925000 5948900 8976400 0 0 0 8538 1873 8736 22690 35613 35613 1 LNLLHEFLQTEIK LERDSLTEKECVKEKLNLLHEFLQTEIKNQ EKLNLLHEFLQTEIKNQLCDLETKLRKEEL K L N I K N 0 0 1 0 0 1 2 0 1 1 4 1 0 1 0 0 1 0 0 0 0 0 13 0 1596.8875 A0A024R7E3;P26358;Q59FP7;K7EJL0;K7EMU8 A0A024R7E3 108 120 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 3 4.17E-05 89.629 1 2 0.94322 0.76873 48.32 3 Median 0.33893 0.34008 NaN 1 0 Median 0.97595 0.78473 2.912 2 0 Median 17962000 10730000 7231800 6908700 5163400 1745200 11054000 5567000 5486500 8539 222 8737 22691;22692;22693 35614;35615;35616;35617 35614 4 LNLNNTVLSK EALGIRKPYIWEYSRLNLNNTVLSKRKLTW WEYSRLNLNNTVLSKRKLTWFVNEGLVDGW R L N S K R 0 0 3 0 0 0 0 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1114.6346 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 426 435 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0050427 74.165 2 1 1.7146 1.5243 70.479 2 Median 2.5053 2.5091 NaN 1 0 Median 1.1734 0.92607 NaN 1 0 Median 39973000 18747000 21226000 35884000 16729000 19155000 4089500 2018600 2070800 8540 1454 8738 22694;22695;22696 35618;35619;35620;35621 35618 4 LNLSCIHSPVVNELMR LAVADAKLGGVIKEKLNLSCIHSPVVNELM NLSCIHSPVVNELMRGIRSQMDGLIPGVEP K L N M R G 0 1 2 0 1 0 1 0 1 1 3 0 1 0 1 2 0 0 0 2 0 0 16 0 1880.9601 Q9Y2X3;B3KN82;B4DUY3 Q9Y2X3 102 117 NOP58 Nucleolar protein 58 yes no 3 2.764E-18 133.71 2 4 1.0806 0.92141 52.445 6 Median 1.3903 1.538 6.0169 2 0 Median 0.80172 0.68281 38.107 4 0 Median 318240000 156940000 161300000 182330000 78786000 103540000 135910000 78158000 57757000 8541 2129 8739;8740 22697;22698;22699;22700;22701;22702 35622;35623;35624;35625;35626;35627;35628;35629;35630;35631 35630 1960 10 LNLSQVR VGTPGRLDDLVSTGKLNLSQVRFLVLDEAD DDLVSTGKLNLSQVRFLVLDEADGLLSQGY K L N V R F 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 828.48175 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 278 284 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0076797 128.82 1 1.2902 1.4228 NaN 1 Median 1.2902 1.4228 NaN 1 0 Median NaN NaN NaN 0 0 Median 41381000 17816000 23565000 41381000 17816000 23565000 0 0 0 8542 452 8741 22703 35632 35632 1 LNLSTRPEK DFLRTVYSVFGFSFKLNLSTRPEKFLGDIE FGFSFKLNLSTRPEKFLGDIEVWDQAEKQL K L N E K F 0 1 1 0 0 0 1 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 9 1 1056.5928 Q5M7Z9;B2RDX5;Q53GX7;P26639;B4DKZ9;B3KTN2 Q5M7Z9 496 504 TARS Threonine--tRNA ligase, cytoplasmic yes no 3 0.0035413 61.78 1 1.9516 2.2083 NaN 1 Median 1.9516 2.2083 NaN 1 0 Median NaN NaN NaN 0 0 Median 16030000 5449100 10580000 16030000 5449100 10580000 0 0 0 8543 892 8742 22704 35633 35633 1 LNLVDLAGSENIGR KETTIDGEELVKIGKLNLVDLAGSENIGRS KLNLVDLAGSENIGRSGAVDKRAREAGNIN K L N G R S 1 1 2 1 0 0 1 2 0 1 3 0 0 0 0 1 0 0 0 1 0 0 14 0 1469.7838 P52732;B2RAM6 P52732 261 274 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 9.4858E-05 86.114 2 1 2.2501 2.3578 0.90825 2 Median 2.2501 2.3578 0.90825 2 0 Median NaN NaN NaN 0 0 Median 50191000 14915000 35276000 47808000 14915000 32894000 2382800 0 2382800 8544 1602 8743 22705;22706;22707 35634;35635;35636;35637;35638;35639 35634 6 LNLVEAFVEDAELR WIKQPLMDKNRIEERLNLVEAFVEDAELRQ RLNLVEAFVEDAELRQTLQEDLLRRFPDLN R L N L R Q 2 1 1 1 0 0 3 0 0 0 3 0 0 1 0 0 0 0 0 2 0 0 14 0 1616.841 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;V9H068;V9H0D5;V9H023;B4DL39;B4DSB9;V9H0B2;Q0ZAJ1 V9H019 360 373 MSH2 DNA mismatch repair protein Msh2 yes no 2 2.217E-09 117.23 2 1.0628 1.0842 4.4981 2 Median 1.0628 1.0842 4.4981 2 0 Median NaN NaN NaN 0 0 Median 43248000 19382000 23866000 43248000 19382000 23866000 0 0 0 8545 1237 8744 22708;22709 35640;35641;35642 35641 3 LNMATLR MGGEEAEIRFCEHKRLNMATLRMTWEAKVQ IRFCEHKRLNMATLRMTWEAKVQLKEILIN R L N L R M 1 1 1 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 7 0 817.44801 Q08211;B3KU66 Q08211 945 951 DHX9 ATP-dependent RNA helicase A yes no 2 0.014036 65.676 2 2.3811 2.4987 NaN 1 Median 2.3811 2.4987 NaN 1 0 Median NaN NaN NaN 0 0 Median 43142000 5642300 37499000 43142000 5642300 37499000 0 0 0 8546 1691 8745 22710;22711 35643;35644 35643 1515 2 LNNDDNVDGLLVQLPLPEHIDER PASISEEELLNLINKLNNDDNVDGLLVQLP GLLVQLPLPEHIDERRICNAVSPDKDVDGF K L N E R R 0 1 3 4 0 1 2 1 1 1 5 0 0 0 2 0 0 0 0 2 0 0 23 0 2627.3191 B2R7W0;P13995 B2R7W0 114 136 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 3 0.038365 12.433 1 2.4069 2.365 NaN 1 Median 2.4069 2.365 NaN 1 0 Median NaN NaN NaN 0 0 Median 13586000 3253100 10333000 13586000 3253100 10333000 0 0 0 8547 853 8746 22712 35645 35645 1 LNNELLAK FILPDLGKLQQLEDKLNNELLAKFLEKKYA LQQLEDKLNNELLAKFLEKKYASSANLHLP K L N A K F 1 0 2 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 913.52328 CON__P34955 CON__P34955 289 296 yes yes 2 0.013507 71.922 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22091000 22091000 0 20029000 20029000 0 2062100 2062100 0 + 8548 1164 8747 22713;22714 35646;35647 35646 2 LNNLVLFDK KAKKKKWSKGKVRDKLNNLVLFDKATYDKL GKVRDKLNNLVLFDKATYDKLCKEVPNYKL K L N D K A 0 0 2 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 9 0 1074.6073 P62851 P62851 44 52 RPS25 40S ribosomal protein S25 yes yes 2 7.9593E-06 129.42 2 2 1.1864 1.3782 55.967 3 Median 1.1864 1.3786 0.040019 2 0 Median 0.66947 0.52293 NaN 1 0 Median 505190000 238610000 266580000 481520000 221540000 259970000 23673000 17069000 6604000 8549 1649 8748 22715;22716;22717;22718 35648;35649;35650;35651;35652;35653;35654;35655;35656;35657 35650 10 LNNPGSTVFTEDCNILLK LWAIEMWDPAAQAFRLNNPGSTVFTEDCNI PGSTVFTEDCNILLKLVMAGETTNSRGQRL R L N L K L 0 0 3 1 1 0 1 1 0 1 3 1 0 1 1 1 2 0 0 1 0 0 18 0 2034.0092 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0 A0A024R7E3 1241 1258 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 3.3994E-05 63.76 2 1 0.59365 0.6019 18.815 3 Median 0.52335 0.53378 16.986 2 0 Median 0.85442 0.68597 NaN 1 0 Median 27686000 16257000 11429000 19677000 12088000 7588500 8009100 4168700 3840400 8550 222 8749 22719;22720;22721 35658;35659;35660 35658 3 LNNSELMGR YVLFENTDSVHLALKLNNSELMGRKLRVMR VHLALKLNNSELMGRKLRVMRSVNKEKFKQ K L N G R K 0 1 2 0 0 0 1 1 0 0 2 0 1 0 0 1 0 0 0 0 0 0 9 0 1032.5022 P42696;A2A2V2 P42696 347 355 RBM34 RNA-binding protein 34 yes no 2 0.00032391 96.027 1 1.3375 1.4067 NaN 1 Median 1.3375 1.4067 NaN 1 0 Median NaN NaN NaN 0 0 Median 11358000 4718300 6640000 11358000 4718300 6640000 0 0 0 8551 1566 8750 22722 35661;35662 35661 1323 2 LNPADAPNPVVFVATK SGIRSSSQPAAKRQKLNPADAPNPVVFVAT NPADAPNPVVFVATKDTRALRKALTHLEMR K L N T K D 3 0 2 1 0 0 0 0 0 0 1 1 0 1 3 0 1 0 0 3 0 0 16 0 1651.8934 A0A024R534;O94776 A0A024R534 596 611 MTA2 Metastasis-associated protein MTA2 yes no 2 2.5079E-06 92.151 2 2 1.0165 0.99636 52.001 4 Median 0.55531 0.63261 3.63 2 0 Median 1.859 1.5554 2.3754 2 0 Median 350690000 196880000 153820000 254380000 162420000 91953000 96313000 34450000 61862000 8552 168 8751 22723;22724;22725;22726 35663;35664;35665;35666;35667;35668;35669;35670 35665 8 LNPDLFITGSYDHTVK FKEHSDYVRCGCASKLNPDLFITGSYDHTV NPDLFITGSYDHTVKMFDARTSESVLSVEH K L N V K M 0 0 1 2 0 0 0 1 1 1 2 1 0 1 1 1 2 0 1 1 0 0 16 0 1818.9152 Q8TED0;H0Y8P4 Q8TED0 175 190 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2;3 9.1908E-05 42.149 3 1.2498 1.0212 4.9738 3 Median NaN NaN NaN 0 0 Median 1.2498 1.0212 4.9738 3 0 Median 70641000 30081000 40560000 0 0 0 70641000 30081000 40560000 8553 1936 8752 22727;22728;22729 35671;35672;35673;35674;35675;35676 35675 6 LNPFGNTFLNR PGNALVVDPDKPFRKLNPFGNTFLNRFMCA PFRKLNPFGNTFLNRFMCAQLPNQVLESIS K L N N R F 0 1 3 0 0 0 0 1 0 0 2 0 0 2 1 0 1 0 0 0 0 0 11 0 1291.6673 A0A024R0S6;Q9NZN4;Q8NCJ3;B4DLA1 A0A024R0S6 125 135 EHD2 EH domain-containing protein 2 yes no 2 0.016584 55.064 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8554 57 8753 22730 35677 35677 1 LNPQEYLTSTACR EIYLAYRNFMIDTYRLNPQEYLTSTACRRN YRLNPQEYLTSTACRRNLTGDVCAVMRVHA R L N C R R 1 1 1 0 1 1 1 0 0 0 2 0 0 0 1 1 2 0 1 0 0 0 13 0 1551.7351 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;B4DYF9;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 500 512 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 9.3579E-06 100.88 2 2 1.0592 1.0107 25.69 4 Median 0.75415 0.80095 10.591 2 0 Median 1.4553 1.2297 5.4293 2 0 Median 70048000 37275000 32773000 56070000 31729000 24341000 13978000 5546000 8432000 8555 1798;321 8754 22731;22732;22733;22734 35678;35679;35680;35681;35682;35683;35684;35685;35686;35687 35681 10 LNQDQLDAVSK GKLDDYQERMNKGERLNQDQLDAVSKYQEV KGERLNQDQLDAVSKYQEVTNNLEFAKELQ R L N S K Y 1 0 1 2 0 2 0 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1229.6252 E9PLA9;B4DSF8;G3V153;B3KXU8;Q14444 E9PLA9 88 98 CAPRIN1 Caprin-1 yes no 2 5.7643E-10 128.91 2 1 1.6965 1.5416 48.777 2 Median 2.1604 2.1765 NaN 1 0 Median 1.3323 1.0919 NaN 1 0 Median 48547000 11770000 36777000 46110000 10707000 35403000 2437000 1063200 1373900 8556 954 8755 22735;22736;22737 35688;35689;35690;35691;35692 35690 5 LNQEVALNLK SSLTISEGPIVSERRLNQEVALNLKEDHEV VSERRLNQEVALNLKEDHEVEVGVLKESVD R L N L K E 1 0 2 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 10 0 1140.6503 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1478 1487 AHCTF1 Protein ELYS yes no 2 6.1386E-12 143.28 2 2 1.8387 1.6788 33.695 4 Median 1.218 1.2442 12.493 2 0 Median 2.7216 2.1889 7.6423 2 0 Median 53527000 20739000 32787000 43514000 17934000 25579000 10013000 2804900 7208100 8557 1945 8756 22738;22739;22740;22741 35693;35694;35695;35696;35697 35696 5 LNQLPSVTLDAVLQGDRER NTVNRKALKTERKRKLNQLPSVTLDAVLQG PSVTLDAVLQGDRERGGSLRGGAEDPSKED K L N E R G 1 2 1 2 0 2 1 1 0 0 4 0 0 0 1 1 1 0 0 2 0 0 19 1 2123.1335 B2RWP5;Q96L73;Q96MN8;Q96DQ7;Q8NB95 B2RWP5 787 805 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 3 0.0025021 31.462 1 1.5507 1.3875 NaN 1 Median NaN NaN NaN 0 0 Median 1.5507 1.3875 NaN 1 0 Median 3598300 1250800 2347500 0 0 0 3598300 1250800 2347500 8558 898 8757 22742 35698 35698 1 LNQPPEDGISSVK ______________________________ FKLNQPPEDGISSVKFSPNTSQFLLVSSWD K L N V K F 0 0 1 1 0 1 1 1 0 1 1 1 0 0 2 2 0 0 0 1 0 0 13 0 1382.7042 J3QT28;A0A140VJF3;O43684;J3QSX4 J3QT28 9 21 BUB3 Mitotic checkpoint protein BUB3 yes no 2 5.325E-19 145.99 2 2 1.0825 1.063 13.147 4 Median 1.0297 1.1622 1.0094 2 0 Median 1.1609 0.93473 6.5749 2 0 Median 170570000 80111000 90456000 151220000 71651000 79571000 19344000 8459500 10885000 8559 600 8758 22743;22744;22745;22746 35699;35700;35701;35702;35703;35704;35705 35700 7 LNQSPSLAPVK GKTQNGQDKTNAPSRLNQSPSLAPVKRTYE APSRLNQSPSLAPVKRTYEQMEFPLLKKRK R L N V K R 1 0 1 0 0 1 0 0 0 0 2 1 0 0 2 2 0 0 0 1 0 0 11 0 1152.6503 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 706 716 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 1.0637E-05 108.57 2 1 0.85992 0.93699 24.575 3 Median 0.84217 0.93304 0.59749 2 0 Median 1.7443 1.428 NaN 1 0 Median 114050000 59801000 54244000 108590000 57972000 50621000 5451300 1829000 3622300 8560 878 8759 22747;22748;22749 35706;35707;35708;35709;35710;35711 35708 6 LNQSQREELGLIEQAYDNPHEALSR LALERLKEAYSVKSRLNQSQREELGLIEQA LIEQAYDNPHEALSRIKRHLLTQRAFKEVG R L N S R I 2 2 2 1 0 3 4 1 1 1 4 0 0 0 1 2 0 0 1 0 0 0 25 1 2909.4268 Q6P2Q9;I3L0J9 Q6P2Q9 856 880 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 4 0.0055254 27.09 1 0.62344 0.56149 NaN 1 Median NaN NaN NaN 0 0 Median 0.62344 0.56149 NaN 1 0 Median 2665400 1679900 985460 0 0 0 2665400 1679900 985460 8561 1854 8760 22750 35712 35712 0 LNQVCFDDDGTSSPQDR QSEVADKTEDYLWLKLNQVCFDDDGTSSPQ QVCFDDDGTSSPQDRLTLSQFQKQLLEDYG K L N D R L 0 1 1 4 1 2 0 1 0 0 1 0 0 1 1 2 1 0 0 1 0 0 17 0 1952.817 Q8N1F7;A8K897;H3BVG0;H3BPA9 Q8N1F7 418 434 NUP93 Nuclear pore complex protein Nup93 yes no 2 1.4914E-05 91.62 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8562 1904 8761 22751;22752;22753 35713;35714;35715 35715 3 LNQVLVDIR LSADTKEERDLWMQKLNQVLVDIRLWQPDA DLWMQKLNQVLVDIRLWQPDACYKPIGKP_ K L N I R L 0 1 1 1 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1068.6291 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6 B4DSL6 979 987 ANLN Actin-binding protein anillin yes no 2 0.0019984 78.113 1 1.9601 2.0294 NaN 1 Median 1.9601 2.0294 NaN 1 0 Median NaN NaN NaN 0 0 Median 13782000 4153800 9628600 13782000 4153800 9628600 0 0 0 8563 294 8762 22754 35716 35716 1 LNQYFQK AGLHGNWTLENAKARLNQYFQKEKIQGEYK TLENAKARLNQYFQKEKIQGEYKYTQVGPD R L N Q K E 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 7 0 939.48142 Q08211;Q58F26;Q6PJK6 Q08211 185 191 DHX9 ATP-dependent RNA helicase A yes no 2 0.024809 91.584 2 1 1.4327 1.3771 7.8743 2 Median 1.2961 1.4559 NaN 1 0 Median 1.5838 1.3025 NaN 1 0 Median 119840000 33459000 86381000 109810000 29580000 80234000 10026000 3879300 6146300 8564 1691 8763 22755;22756;22757 35717;35718;35719;35720 35720 4 LNSAIIYDR VAKSTLDIVLANKDRLNSAIIYDRDFSYNY LANKDRLNSAIIYDRDFSYNYFGFKTLERS R L N D R D 1 1 1 1 0 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1063.5662 B4DNN4;Q53GZ5;P23921;B4E0I8 B4DNN4 101 109 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.0093753 64.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8565 1014 8764 22758 35721 35721 1 LNSGGGLSEELGSAR HSLGKVTSDLAKRRKLNSGGGLSEELGSAR LNSGGGLSEELGSARRSGEVTLTKGDPGSL K L N A R R 1 1 1 0 0 0 2 4 0 0 3 0 0 0 0 3 0 0 0 0 0 0 15 0 1445.711 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7 Q59FM7 44 58 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.0002241 72.496 2 1 0.87137 0.87291 26.774 3 Median 0.76527 0.76161 19.291 2 0 Median 1.3326 1.1351 NaN 1 0 Median 24392000 12977000 11415000 21566000 11660000 9906100 2825900 1317000 1508900 8566 364 8765 22759;22760;22761 35722;35723;35724;35725;35726 35722 5 LNSLAIGLR LAAPLLKRLSLSTSKLNSLAIGLRQIAASS SLSTSKLNSLAIGLRQIAASSQDSVGRVLR K L N L R Q 1 1 1 0 0 0 0 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 9 0 955.58147 P54886 P54886 433 441 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 1.8757E-05 119.29 2 2 1.7471 1.5484 18.408 4 Linear 1.7321 1.8626 10.381 2 0 Median 1.5873 1.378 0.74566 2 0 Median 87877000 37819000 50058000 82657000 35740000 46918000 5219600 2079700 3139800 8567 1611 8766 22762;22763;22764;22765 35727;35728;35729;35730;35731;35732 35729 6 LNSPEETAFQTPK TNGRVSSSYPVEPKKLNSPEETAFQTPKSS KKLNSPEETAFQTPKSSQMPRPSVPPLVKT K L N P K S 1 0 1 0 0 1 2 0 0 0 1 1 0 1 2 1 2 0 0 0 0 0 13 0 1460.7147 B4DZG6;Q9BTX1 B4DZG6 69 81 NDC1 Nucleoporin NDC1 yes no 2 0.0038872 62.408 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3885800 0 3885800 3885800 0 3885800 0 0 0 8568 1055 8767 22766;22767 35733;35734 35734 2 LNSSDPSLIGLK ANALTKYMRDPTFVRLNSSDPSLIGLKQYY FVRLNSSDPSLIGLKQYYKVVNSYPLAHKV R L N L K Q 0 0 1 1 0 0 0 1 0 1 3 1 0 0 1 3 0 0 0 0 0 0 12 0 1242.682 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6 Q8TDR3 266 277 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 2 9.0593E-05 96.342 1 1.5953 1.6296 NaN 1 Median 1.5953 1.6296 NaN 1 0 Median NaN NaN NaN 0 0 Median 11979000 4621700 7356800 11979000 4621700 7356800 0 0 0 8569 1901 8768 22768 35735 35735 1 LNSSIVEPK YNPGLDGIIEYDDFKLNSSIVEPKEPAPET EYDDFKLNSSIVEPKEPAPETADGPYLVIV K L N P K E 0 0 1 0 0 0 1 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 9 0 985.54441 Q00653;A0A1P8C958;D3DR86;M0R119 Q00653 20 28 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2 0.0023856 74.464 2 2.9866 3.0661 0.54637 2 Median 2.9866 3.0661 0.54637 2 0 Median NaN NaN NaN 0 0 Median 31838000 8050100 23788000 31838000 8050100 23788000 0 0 0 8570 1674 8769 22769;22770 35736;35737 35737 2 LNTDPMLLQFFK NRMNYFQVAKTVAQRLNTDPMLLQFFKSQG AQRLNTDPMLLQFFKSQGYRDGPGNPLRHN R L N F K S 0 0 1 1 0 1 0 0 0 0 3 1 1 2 1 0 1 0 0 0 0 0 12 0 1465.7639 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5 Q93009 830 841 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 2.6449E-07 103.7 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8571 1954 8770 22771;22772 35738;35739 35739 1805 2 LNTGILNK LFMENKQPEDDLFDRLNTGILNKHLQDLME EDDLFDRLNTGILNKHLQDLMEGLTAKVFR R L N N K H 0 0 2 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 871.51272 P11387;B9EG90 P11387 568 575 TOP1 DNA topoisomerase 1 yes no 2 1.4599E-17 166.05 3 2 1.4744 1.2585 3.7199 2 Median NaN NaN NaN 0 0 Median 1.4744 1.2585 3.7199 2 0 Median 1030900000 59386000 971520000 879090000 0 879090000 151820000 59386000 92435000 8572 1470 8771 22773;22774;22775;22776;22777 35740;35741;35742;35743;35744;35745 35742 6 LNTLLQR MMVAGFKKQMADTGKLNTLLQRAPQCLGKF KQMADTGKLNTLLQRAPQCLGKFIEIAARK K L N Q R A 0 1 1 0 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 856.51305 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 511 517 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 1.3763E-06 153.15 2 2 1.1891 1.3842 48.586 3 Median 1.2027 1.4115 2.7582 2 0 Median 0.72731 0.60884 NaN 1 0 Median 782430000 360030000 422400000 749460000 345240000 404220000 32971000 14794000 18177000 8573 999 8772 22778;22779;22780;22781 35746;35747;35748;35749;35750 35748 5 LNTQEIFDDWAR EGQKLKQDGDSFRMKLNTQEIFDDWARKVQ RMKLNTQEIFDDWARKVQQRNLGVSGRIFT K L N A R K 1 1 1 2 0 1 1 0 0 1 1 0 0 1 0 0 1 1 0 0 0 0 12 0 1506.7103 Q14204 Q14204 693 704 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0016061 76.143 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4003000 0 4003000 4003000 0 4003000 0 0 0 8574 1729 8773 22782 35751 35751 1 LNTTTMSNATANSSIR KRRGLAPNTPGKARKLNTTTMSNATANSSI NTTTMSNATANSSIRPIFGGTVYHSPVSRL K L N I R P 2 1 3 0 0 0 0 0 0 1 1 0 1 0 0 3 4 0 0 0 0 0 16 0 1680.8101 A0A024RC67;O43663;G3V3N7 A0A024RC67 488 503 PRC1 Protein regulator of cytokinesis 1 yes no 2 4.5034E-34 155.88 2 1 0.9232 1.0007 18.754 3 Plateau 0.91098 0.96096 7.0093 2 0 Median 0.82796 0.7025 NaN 1 0 Median 52382000 27386000 24996000 47244000 24405000 22839000 5137900 2981000 2156900 8575 353 8774 22783;22784;22785 35752;35753;35754;35755 35754 262 4 LNVCVSK RAITHLNNNFMFGQKLNVCVSKQPAIMPGQ NNFMFGQKLNVCVSKQPAIMPGQSYGLEDG K L N S K Q 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 7 0 818.43202 B2R959;Q6NTA2;P14866;M0QXS5;M0QYT0;H7C464;B7WPG3;C9IYN3;A8K894;D6W592;A0A0S2Z6K1;A0A0S2Z5U3;Q8WVV9 B2R959 418 424 HNRNPL;HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L;Heterogeneous nuclear ribonucleoprotein L-like no no 2 0.026719 79.451 2 1.3713 1.4284 10.39 2 Median 1.3713 1.4284 10.39 2 0 Median NaN NaN NaN 0 0 Median 69333000 28075000 41258000 69333000 28075000 41258000 0 0 0 8576 865;586 8775 22786;22787 35756;35757 35757 2 LNVDEAFEQLVR ASHHVAYFEASAKLRLNVDEAFEQLVRAVR KLRLNVDEAFEQLVRAVRKYQEQELPPSPP R L N V R A 1 1 1 1 0 1 2 0 0 0 2 0 0 1 0 0 0 0 0 2 0 0 12 0 1431.7358 A0A024QZF2;P10301 A0A024QZF2 177 188 RRAS Ras-related protein R-Ras yes no 2 0.025117 49.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1995700 0 1995700 1995700 0 1995700 0 0 0 8577 20 8776 22788 35758 35758 1 LNVDFALIHK PDAGGAKRVTSIADRLNVDFALIHKERKKA SIADRLNVDFALIHKERKKANEVDRMVLVG R L N H K E 1 0 1 1 0 0 0 0 1 1 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1168.6604 Q53FW2;P60891;B1ALA9 Q53FW2 185 194 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 2;3 0.031825 49.85 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7050900 0 7050900 7050900 0 7050900 0 0 0 8578 1626 8777 22789;22790 35759;35760 35760 2 LNVSQDDVLYALK LLVEPSRNDLLLRVRLNVSQDDVLYALKDE VRLNVSQDDVLYALKDE_____________ R L N L K D 1 0 1 2 0 1 0 0 0 0 3 1 0 0 0 1 0 0 1 2 0 0 13 0 1476.7824 B7Z8H0;Q96F82;Q13415;A8K794 B7Z8H0 842 854 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.00030291 65.5 1 1.0398 1.0426 NaN 1 Median 1.0398 1.0426 NaN 1 0 Median NaN NaN NaN 0 0 Median 15841000 7057900 8783400 15841000 7057900 8783400 0 0 0 8579 1103 8778 22791 35761 35761 1 LNVSQDDVLYALKDE LLVEPSRNDLLLRVRLNVSQDDVLYALKDE LNVSQDDVLYALKDE_______________ R L N D E - 1 0 1 3 0 1 1 0 0 0 3 1 0 0 0 1 0 0 1 2 0 0 15 1 1720.8519 B7Z8H0;Q96F82;Q13415;A8K794 B7Z8H0 842 856 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.040464 61.212 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3293100 0 3293100 0 0 0 3293100 0 3293100 8580 1103 8779 22792 35762 35762 1 LNVVAFLNELPK LKDPTLRFRLLKHTRLNVVAFLNELPKTQH HTRLNVVAFLNELPKTQHDVNSFVVDISAQ R L N P K T 1 0 2 0 0 0 1 0 0 0 3 1 0 1 1 0 0 0 0 2 0 0 12 0 1355.7813 Q9UBU9;E9PIN3 Q9UBU9 460 471 NXF1 Nuclear RNA export factor 1 no no 2 0.0081238 59.426 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1450100 1450100 0 1450100 1450100 0 0 0 0 8581 2099 8780 22793;22794 35763;35764 35764 2 LNVWDLSK PHNETILASSGTDRRLNVWDLSKIGEEQSA SSGTDRRLNVWDLSKIGEEQSAEDAEDGPP R L N S K I 0 0 1 1 0 0 0 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 8 0 973.52328 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5;B4DRT0;Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP02;Q5JNZ6 Q6FHQ0 341 348 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.015059 69.423 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4261200 4261200 0 4261200 4261200 0 0 0 0 8582 1771;1695 8781 22795;22796 35765;35766 35766 2 LNWLSVDFNNWK ESGQSWPRLTKERAKLNWLSVDFNNWKDWE RAKLNWLSVDFNNWKDWEDDSDEDMSNFDR K L N W K D 0 0 3 1 0 0 0 0 0 0 2 1 0 1 0 1 0 2 0 1 0 0 12 0 1534.7569 A0A024RB32;A0A087WYT3;B3KUY2;Q15185;B4DDC6 A0A024RB32 96 107 PTGES3 Prostaglandin E synthase 3 yes no 2 4.5337E-05 95.573 1 1 2.7306 2.1264 NaN 1 Median NaN NaN NaN 0 0 Median 2.7306 2.1264 NaN 1 0 Median 28881000 3565300 25316000 16549000 0 16549000 12333000 3565300 8767400 8583 323 8782 22797;22798 35767;35768 35767 2 LNYEENKEESLLEK AVKRLKEKLEAEMKKLNYEENKEESLLEKR KLNYEENKEESLLEKRRQLSRDIGRLKETY K L N E K R 0 0 2 0 0 0 5 0 0 0 3 2 0 0 0 1 0 0 1 0 0 0 14 1 1736.8469 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 468 481 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 2.421E-21 141.46 4 1 0.9015 1.0495 12.009 5 Median 0.87716 1.0282 5.9095 4 0 Median 1.5233 1.2954 NaN 1 0 Median 264610000 133910000 130700000 231660000 121810000 109850000 32946000 12098000 20848000 8584 69 8783 22799;22800;22801;22802;22803 35769;35770;35771;35772;35773;35774;35775;35776 35771 8 LNYEHDNISLK SWIAYSTVSRFFLYRLNYEHDNISLKRVSK FLYRLNYEHDNISLKRVSKMPAFLRSALQI R L N L K R 0 0 2 1 0 0 1 0 1 1 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1344.6674 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YWK2;H3BRM8 Q969X6 418 428 CIRH1A Cirhin yes no 2;3 7.1228E-10 126.76 3 3 1.059 0.90627 10.554 5 Median 0.85503 0.9569 15.954 2 0 Median 1.1302 0.90627 8.5678 3 0 Median 178920000 93943000 84976000 145260000 78485000 66776000 33659000 15458000 18201000 8585 1955 8784 22804;22805;22806;22807;22808;22809 35777;35778;35779;35780;35781;35782;35783;35784 35777 8 LNYLDPR TDREENKQIALGTSKLNYLDPRITVAWCKK QIALGTSKLNYLDPRITVAWCKKWGVPIEK K L N P R I 0 1 1 1 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 7 0 889.46577 P11387;B9EG90;Q9BVT2;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;B4E061;Q8TBP3;H0YAR3 P11387 721 727 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.030367 85.265 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 192200000 0 192200000 192200000 0 192200000 0 0 0 8586 1470 8785 22810;22811 35785;35786 35785 2 LNYLLR FSNKGADVFLEALARLNYLLRVNGSEQTVV DVFLEALARLNYLLRVNGSEQTVVAFFIMP R L N L R V 0 1 1 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 6 0 790.47012 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6 P13807 349 354 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.00019854 129.52 1 2 0.46331 0.3877 4.6358 2 Median NaN NaN NaN 0 0 Median 0.46331 0.3877 4.6358 2 0 Median 37366000 31990000 5375900 19819000 19819000 0 17547000 12171000 5375900 8587 1479 8786 22812;22813;22814 35787;35788;35789 35787 3 LNYTRPGLPTLNPQLLEAWK TKRRMKDDLVPETARLNYTRPGLPTLNPQL PGLPTLNPQLLEAWKNEVKEKGHVNCPNDC R L N W K N 1 1 2 0 0 1 1 1 0 0 5 1 0 0 3 0 2 1 1 0 0 0 20 1 2323.2689 Q96KM6 Q96KM6 722 741 ZNF512B Zinc finger protein 512B yes yes 3 0.0015047 31.767 1 1.5108 1.243 NaN 1 Median NaN NaN NaN 0 0 Median 1.5108 1.243 NaN 1 0 Median 4371600 1938200 2433500 0 0 0 4371600 1938200 2433500 8588 1976 8787 22815 35790 35790 1 LPAAGVGDMVMATVK LYIISVKGIKGRLNRLPAAGVGDMVMATVK LPAAGVGDMVMATVKKGKPELRKKVHPAVV R L P V K K 3 0 0 1 0 0 0 2 0 0 1 1 2 0 1 0 1 0 0 3 0 0 15 0 1458.7575 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;B9ZVP7 Q9BTQ7 46 60 RPL23 60S ribosomal protein L23 yes no 2 1.4743E-70 205.49 4 6 1.5541 1.2127 44.789 9 Median 1.8115 2.1489 66.949 3 0 Plateau 1.5095 1.2037 32.964 6 0 Median 1444900000 548370000 896500000 1304200000 481270000 822890000 140700000 67095000 73602000 8589 84 8788;8789;8790 22816;22817;22818;22819;22820;22821;22822;22823;22824;22825 35791;35792;35793;35794;35795;35796;35797;35798;35799;35800;35801;35802;35803;35804;35805;35806;35807 35795 81;82 17 LPACVVDCGTGYTK ______________________________ RLPACVVDCGTGYTKLGYAGNTEPQFIIPS R L P T K L 1 0 0 1 2 0 0 2 0 0 1 1 0 0 1 0 2 0 1 2 0 0 14 0 1539.7061 A0A024RAI1;P61158;F8WEW2;F8WE84 A0A024RAI1 5 18 ACTR3 Actin-related protein 3 yes no 2 0.011753 50.149 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8590 304 8791 22826;22827 35808;35809 35809 2 LPAIALDLLR NVLKMAASSVKKDRKLPAIALDLLRLALKE KKDRKLPAIALDLLRLALKEDKFPRFWKEV K L P L R L 2 1 0 1 0 0 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 10 0 1093.6859 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 264 273 MYBBP1A Myb-binding protein 1A yes no 2 8.4089E-06 106.42 2 2 0.92957 0.89802 9.6659 4 Median 0.87244 0.98829 4.4071 2 0 Median 0.99511 0.8409 0.15512 2 0 Median 159860000 83428000 76429000 115870000 61145000 54728000 43984000 22283000 21701000 8591 1997 8792 22828;22829;22830;22831 35810;35811;35812;35813;35814;35815;35816;35817 35813 8 LPATIAR QLEELLSDMKADVTRLPATIARIPPVAVRL DMKADVTRLPATIARIPPVAVRLQMSERNI R L P A R I 2 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 7 0 740.45447 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1864 1870 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.023524 90.986 1 1 1.1564 1.1506 43.005 2 Median 0.73802 0.84893 NaN 1 0 Median 1.8121 1.5596 NaN 1 0 Median 82622000 46010000 36611000 75435000 43363000 32072000 7186400 2647200 4539300 8592 515 8793 22832;22833 35818;35819;35820 35818 3 LPAVSSVACGASVGYAVTK GEGAEEKSIPTLISRLPAVSSVACGASVGY SSVACGASVGYAVTKDGRVFAWGMGTNYQL R L P T K D 4 0 0 0 1 0 0 2 0 0 1 1 0 0 1 3 1 0 1 4 0 0 19 0 1835.9451 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754 Q5T081 344 362 RCC1 Regulator of chromosome condensation yes no 2 4.3339E-23 135.72 2 2 0.84309 0.81478 2.0103 4 Median 0.73242 0.8171 0.10427 2 0 Median 0.98042 0.79832 2.5894 2 0 Median 190050000 108290000 81760000 134110000 78490000 55617000 55941000 29797000 26144000 8593 550 8794 22834;22835;22836;22837 35821;35822;35823;35824;35825;35826;35827 35827 7 LPAVVTADLR VEREIDGGLETLRLKLPAVVTADLRLNEPR TLRLKLPAVVTADLRLNEPRYATLPNIMKA K L P L R L 2 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 10 0 1053.6182 P38117;M0QY67 P38117 177 186 ETFB Electron transfer flavoprotein subunit beta yes no 2 3.7286E-09 125.16 2 4.0048 4.5439 2.8371 2 Median 4.0048 4.5439 2.8371 2 0 Median NaN NaN NaN 0 0 Median 129770000 26120000 103650000 129770000 26120000 103650000 0 0 0 8594 1551 8795 22838;22839 35828;35829;35830;35831 35829 4 LPDAHSDYAR SFRRSPTKSSLDYRRLPDAHSDYARYSGSY LDYRRLPDAHSDYARYSGSYNDYLRAAQMH R L P A R Y 2 1 0 2 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 10 0 1143.5309 A0A0S2Z4Z0;Q96PK6;B4DNG4 A0A0S2Z4Z0 638 647 RBM14 RNA-binding protein 14 yes no 2 0.035435 48.602 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8595 571 8796 22840 35832 35832 1 LPDDQIPK SFAGNLNTYKRLAIKLPDDQIPKTNCNVAV YKRLAIKLPDDQIPKTNCNVAVINVGAPAA K L P P K T 0 0 0 2 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 8 0 924.49165 Q01813;Q8WTZ9;O14943;B1APP6 Q01813 401 408 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.039273 47.657 1 1.5126 1.5711 NaN 1 Median 1.5126 1.5711 NaN 1 0 Median NaN NaN NaN 0 0 Median 33583000 14594000 18989000 33583000 14594000 18989000 0 0 0 8596 1677 8797 22841 35833 35833 1 LPDFSYCILER RYRALIGQEGDPDLKLPDFSYCILERLGRS PDLKLPDFSYCILERLGRSRWQGELQRDLH K L P E R L 0 1 0 1 1 0 1 0 0 1 2 0 0 1 1 1 0 0 1 0 0 0 11 0 1411.6806 Q6AHZ7;Q12789 Q6AHZ7 173 183 DKFZp686A111;GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.00098444 70.977 3 1 0.56074 0.55831 6.6598 2 Median 0.56074 0.55831 6.6598 2 0 Median NaN NaN NaN 0 0 Median 31336000 16192000 15144000 31336000 16192000 15144000 0 0 0 8597 1699 8798 22842;22843;22844;22845 35834;35835;35836;35837;35838 35834 5 LPDIFEAQIAGLR KWTLLQEQKSAKSSRLPDIFEAQIAGLRGQ SRLPDIFEAQIAGLRGQLEALQVDGGRLEA R L P L R G 2 1 0 1 0 1 1 1 0 2 2 0 0 1 1 0 0 0 0 0 0 0 13 0 1441.7929 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 137 149 KRT7 Keratin, type II cytoskeletal 7 no no 2 3.2847E-19 147.74 2 2 0.95619 1.0949 13.172 4 Linear 0.92615 1.0666 1.8733 2 0 Median 0.99569 0.85493 5.2436 2 0 Median 469310000 234810000 234500000 373780000 187320000 186470000 95526000 47496000 48030000 + 8598 1171;1158 8799 22846;22847;22848;22849 35839;35840;35841;35842;35843;35844;35845;35846 35840 8 LPDMLNAEIVLGNVQNAK LLNQQLPIESQMVSKLPDMLNAEIVLGNVQ MLNAEIVLGNVQNAKDAVNWLGYAYLYIRM K L P A K D 2 0 3 1 0 1 1 1 0 1 3 1 1 0 1 0 0 0 0 2 0 0 18 0 1938.0244 O75643;A4FU77;Q9H8B9 O75643 897 914 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.9644E-12 109.6 2 1.3962 1.4355 11.147 2 Median 1.3962 1.4355 11.147 2 0 Median NaN NaN NaN 0 0 Median 45240000 19111000 26129000 45240000 19111000 26129000 0 0 0 8599 1411 8800 22850;22851 35847;35848;35849 35849 1093 3 LPDNYTQDTWR GSKKLVIKNFRDRPRLPDNYTQDTWRKLHE DRPRLPDNYTQDTWRKLHEAVRAVQSSTSI R L P W R K 0 1 1 2 0 1 0 0 0 0 1 0 0 0 1 0 2 1 1 0 0 0 11 0 1407.6419 Q13619;A0A087WWN2 Q13619 54 64 CUL4A Cullin-4A yes no 2 0.0047068 57.532 2 2 0.83787 0.69515 20.133 3 Median 0.49055 0.49969 NaN 1 0 Median 0.84159 0.70727 2.4442 2 0 Median 31345000 18433000 12912000 20577000 12867000 7710100 10768000 5566600 5201900 8600 1718 8801 22852;22853;22854;22855 35850;35851;35852;35853;35854;35855 35852 6 LPEAAFLAR GKVDACLELLIRTGRLPEAAFLARTYLPSQ LIRTGRLPEAAFLARTYLPSQVSRVVKLWR R L P A R T 3 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 9 0 986.55492 P35606 P35606 751 759 COPB2 Coatomer subunit beta yes yes 2 0.0016071 83.206 2 1.624 1.633 6.0093 2 Median 1.624 1.633 6.0093 2 0 Median NaN NaN NaN 0 0 Median 32440000 12570000 19871000 32440000 12570000 19871000 0 0 0 8601 1545 8802 22856;22857 35856;35857 35857 2 LPEASQSPLVLK LPINSAAIKAECTARLPEASQSPLVLKQAV TARLPEASQSPLVLKQAVRKPLEAVLRYLE R L P L K Q 1 0 0 0 0 1 1 0 0 0 3 1 0 0 2 2 0 0 0 1 0 0 12 0 1280.734 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q9BRL8;F8W9Y9 E7ESY4 516 527 MTA1 Metastasis-associated protein MTA1 yes no 2 9.4492E-05 96.113 1 2 1.5724 1.2435 34.669 3 Median 0.72668 0.73194 NaN 1 0 Median 1.6421 1.3218 8.6368 2 0 Median 39404000 18062000 21342000 27850000 13685000 14165000 11554000 4376700 7177000 8602 1223 8803 22858;22859;22860 35858;35859;35860 35859 3 LPEDPLLSGLLDSPALK LQLELAQVLAQERPKLPEDPLLSGLLDSPA EDPLLSGLLDSPALKACLDTAVENMPSLKM K L P L K A 1 0 0 2 0 0 1 1 0 0 6 1 0 0 3 2 0 0 0 0 0 0 17 0 1776.9873 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1209 1225 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.484E-68 192.86 2 1.5787 1.5986 6.0934 2 Median 1.5787 1.5986 6.0934 2 0 Median NaN NaN NaN 0 0 Median 58083000 21689000 36394000 58083000 21689000 36394000 0 0 0 8603 587 8804 22861;22862 35861;35862;35863;35864 35861 4 LPEELGR DAKEIFGRIQDKHKKLPEELGRDQNTVETL RIQDKHKKLPEELGRDQNTVETLQRMHTTF K L P G R D 0 1 0 0 0 0 2 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 812.43922 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1742 1748 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.028425 71.949 1 0.98447 0.82154 NaN 1 Median NaN NaN NaN 0 0 Median 0.98447 0.82154 NaN 1 0 Median 10504000 5434500 5070000 0 0 0 10504000 5434500 5070000 8604 415 8805 22863 35865 35865 1 LPEEVATPTTDEEK VLIRKLLALMAQEQKLPEEVATPTTDEEKD KLPEEVATPTTDEEKDSLIAIDRSFLSTLP K L P E K D 1 0 0 1 0 0 4 0 0 0 1 1 0 0 2 0 3 0 0 1 0 0 14 0 1557.741 O95602;B9ZVN9 O95602 351 364 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 2.3371E-11 118.77 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8605 1428 8806 22864 35866 35866 1 LPEHPEGGEPEDDEAPAK RHSEVETDSKKKKMKLPEHPEGGEPEDDEA HPEGGEPEDDEAPAKGKFNWKGTIKAILKQ K L P A K G 2 0 0 2 0 0 5 2 1 0 1 1 0 0 4 0 0 0 0 0 0 0 18 0 1915.8436 Q9NX58;A8K3Y5 Q9NX58 289 306 LYAR Cell growth-regulating nucleolar protein yes no 2;3 4.8959E-12 105.65 4 2 0.9307 0.99664 9.5653 6 Median 0.89638 0.96034 6.1267 4 0 Median 1.4105 1.1207 0.94659 2 0 Median 209320000 106270000 103060000 176560000 92617000 83940000 32767000 13651000 19116000 8606 2079 8807 22865;22866;22867;22868;22869;22870 35867;35868;35869;35870;35871;35872;35873;35874;35875;35876 35870 10 LPEIEEYYDGNTSSNSR AEWHDSDWILSVPAKLPEIEEYYDGNTSSN EIEEYYDGNTSSNSRQSRQGSRSGSRQDGR K L P S R Q 0 1 2 1 0 0 3 1 0 1 1 0 0 0 1 3 1 0 2 0 0 0 17 0 1972.865 B4DW97;A0A087WVC1;Q9BQ39;K0J110;Q9NTA9 B4DW97 661 677 DDX50;mcdrh;DKFZp761E0323 ATP-dependent RNA helicase DDX50 yes no 2 9.5532E-08 97.69 3 2 1.3945 1.2298 3.3155 2 Median NaN NaN NaN 0 0 Median 1.3945 1.2298 3.3155 2 0 Median 9856600 2066200 7790300 4989500 0 4989500 4867000 2066200 2800800 8607 416 8808 22871;22872;22873;22874;22875 35877;35878;35879;35880;35881;35882 35877 6 LPELEQLER ______________________________ ERIEDRLPELEQLERIGLFSHAEIKAIIKK R L P E R I 0 1 0 0 0 1 3 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1125.603 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 13 21 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.001341 86.67 2 1 0.97855 1.1163 14.511 3 Median 0.9246 1.0392 10.131 2 0 Median 1.5039 1.293 NaN 1 0 Median 164740000 84452000 80285000 156980000 81493000 75484000 7759600 2958900 4800700 8608 925 8809 22876;22877;22878 35883;35884;35885;35886;35887;35888 35883 6 LPEPTTR WQLPTERVEEAIVARLPEPTTRLPREKPLP VEEAIVARLPEPTTRLPREKPLPRPRPLTR R L P T R L 0 1 0 0 0 0 1 0 0 0 1 0 0 0 2 0 2 0 0 0 0 0 7 0 812.43922 Q15050 Q15050 92 98 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.010107 125.08 2 0.86733 0.99729 3.0906 2 Median 0.86733 0.99729 3.0906 2 0 Median NaN NaN NaN 0 0 Median 326880000 177620000 149260000 326880000 177620000 149260000 0 0 0 8609 1750 8810 22879;22880 35889;35890;35891;35892 35889 4 LPEQPVDVPSEIADSSMTRPQELPELPK TTMDFPESSAIEALRLPEQPVDVPSEIADS DSSMTRPQELPELPKTTALELQESSVASAM R L P P K T 1 1 0 2 0 2 4 0 0 1 3 1 1 0 6 3 1 0 0 2 0 0 28 1 3101.5591 P18583;D3DSF7 P18583 339 366 SON Protein SON yes no 3 7.9727E-07 40.428 1 1.8815 2.1182 NaN 1 Median 1.8815 2.1182 NaN 1 0 Median NaN NaN NaN 0 0 Median 13698000 5387900 8310400 13698000 5387900 8310400 0 0 0 8610 1499 8811 22881 35893 35893 1254 1 LPETNLFETEETRK RINMVEELEKALGMKLPETNLFETEETRKI KLPETNLFETEETRKILDDICVAKAVECPP K L P R K I 0 1 1 0 0 0 4 0 0 0 2 1 0 1 1 0 3 0 0 0 0 0 14 1 1705.8523 Q15046;Q6ZTI3 Q15046 408 421 KARS Lysine--tRNA ligase yes no 3 3.1772E-05 80.706 2 1.9652 2.2271 10.291 2 Median 1.9652 2.2271 10.291 2 0 Median NaN NaN NaN 0 0 Median 50405000 18318000 32086000 50405000 18318000 32086000 0 0 0 8611 1749 8812 22882;22883 35894;35895 35894 1 LPEVQQATK TSVQAKGTNKLRKPKLPEVQQATKAPESSD KLRKPKLPEVQQATKAPESSDDSEDSSDSS K L P T K A 1 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1012.5553 E7ETY2;B4DRA2;Q13428 Q13428 1130 1138 TCOF1 Treacle protein no no 2 0.0059592 65.404 1 0.79274 0.82446 NaN 1 Median 0.79274 0.82446 NaN 1 0 Median NaN NaN NaN 0 0 Median 33749000 18301000 15448000 33749000 18301000 15448000 0 0 0 8612 1712;1225 8813 22884 35896;35897 35897 2 LPFLGLALSSR LRKLLNFYEKQEGEKLPFLGLALSSRKNLC EGEKLPFLGLALSSRKNLCIHPEVTPLRFG K L P S R K 1 1 0 0 0 0 0 1 0 0 4 0 0 1 1 2 0 0 0 0 0 0 11 0 1172.6917 A8MX75;P18074;E7EVE9;K7EIT8;Q2TB79;K7ENL1;B4E0F6 A8MX75 78 88 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 2 0.00076687 72.643 2 2 0.68177 0.63261 22.643 4 Median 0.61212 0.6118 4.8805 2 0 Median 0.91778 0.78223 30.173 2 0 Median 29790000 16532000 13258000 23966000 13664000 10302000 5823700 2867800 2956000 8613 799 8814 22885;22886;22887;22888 35898;35899;35900;35901;35902 35902 5 LPFLSSSNLSLDVLR LKLQMEFKAVQQVQRLPFLSSSNLSLDVLR LPFLSSSNLSLDVLRGNDETIGFEDILNDP R L P L R G 0 1 1 1 0 0 0 0 0 0 5 0 0 1 1 4 0 0 0 1 0 0 15 0 1659.9196 Q9Y244 Q9Y244 92 106 POMP Proteasome maturation protein yes yes 2 2.5294E-10 108.56 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4485700 0 4485700 4485700 0 4485700 0 0 0 8614 2122 8815 22889;22890 35903;35904 35903 2 LPFPIIDDR SKDINAYNCEEPTEKLPFPIIDDRNRELAI EEPTEKLPFPIIDDRNRELAILLGMLDPAE K L P D R N 0 1 0 2 0 0 0 0 0 2 1 0 0 1 2 0 0 0 0 0 0 0 9 0 1084.5917 V9HWC7;P30041;A4UCS6 V9HWC7 98 106 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 0.0010227 91.069 2 1 4.0652 4.0347 72.421 2 Median 5.9289 6.7331 NaN 1 0 Median 2.7873 2.4178 NaN 1 0 Median 54097000 11417000 42680000 51986000 11005000 40981000 2111000 412180 1698800 8615 1527 8816 22891;22892;22893 35905;35906;35907;35908;35909 35906 5 LPFTDTEQECLVK YEVCQEMGLMEDLLKLPFTDTEQECLVKFL LKLPFTDTEQECLVKFLQSSASVQNHEFLL K L P V K F 0 0 0 1 1 1 2 0 0 0 2 1 0 1 1 0 2 0 0 1 0 0 13 0 1578.76 Q8WYP5;B3KVE5 Q8WYP5 928 940 AHCTF1 Protein ELYS yes no 2 0.00011321 85.813 2 2 1.9449 1.7268 23.962 4 Median 1.3718 1.3932 2.8821 2 0 Median 2.6274 2.1076 0.70258 2 0 Median 70590000 24507000 46083000 47172000 17863000 29309000 23419000 6644300 16774000 8616 1945 8817 22894;22895;22896;22897 35910;35911;35912;35913;35914;35915 35914 6 LPGAIDVIGQTITISR SPPSLFKTGLPPSRRLPGAIDVIGQTITIS PGAIDVIGQTITISRVEGRRRANENSNIQV R L P S R V 1 1 0 1 0 1 0 2 0 4 1 0 0 0 1 1 2 0 0 1 0 0 16 0 1652.9461 B4DTW7;Q6UN15;A0A0B4J203 B4DTW7 78 93 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 2 0.00091716 67.153 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8617 1035 8818 22898;22899 35916;35917 35917 2 LPGEGNAGLLGLGPEAAAPGK ______________________________ AGLLGLGPEAAAPGKRIRKPSLLYEGFESP K L P G K R 4 0 1 0 0 0 2 6 0 0 4 1 0 0 3 0 0 0 0 0 0 0 21 0 1888.0054 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7;E9PIQ3;H0Y799;A0A140T9X8;E9PKQ9 A0A024RCR5 11 31 BRD2 Bromodomain-containing protein 2 yes no 2 1.714E-21 115.82 2 2 0.82295 0.75382 22.242 4 Median 0.60227 0.6113 19.066 2 0 Median 1.0475 0.84927 6.2921 2 0 Median 60697000 35060000 25637000 43159000 26527000 16632000 17537000 8532800 9004400 8618 367 8819 22900;22901;22902;22903 35918;35919;35920;35921;35922;35923;35924;35925;35926;35927 35919 10 LPGELEPVQATQNK ELAEQLGLSTGEKEKLPGELEPVQATQNKT KLPGELEPVQATQNKTGKYVPPSLRDGASR K L P N K T 1 0 1 0 0 2 2 1 0 0 2 1 0 0 2 0 1 0 0 1 0 0 14 0 1522.7991 Q6IAM0;O75821;K7EL20;K7EP16;K7ER90 Q6IAM0 196 209 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 2.8359E-15 126.66 2 1.6368 1.6134 NaN 1 Median 1.6368 1.6134 NaN 1 0 Median NaN NaN NaN 0 0 Median 38081000 8074000 30007000 38081000 8074000 30007000 0 0 0 8619 1414 8820 22904;22905 35928;35929;35930 35930 3 LPGGELNPGEDEVEGLK LPHVLLLQLGTTFFKLPGGELNPGEDEVEG GGELNPGEDEVEGLKRLMTEILGRQDGVLQ K L P L K R 0 0 1 1 0 0 4 4 0 0 3 1 0 0 2 0 0 0 0 1 0 0 17 0 1751.8578 B2R6U8;A0A024R6W2;O43809;H3BV41;H3BND3 B2R6U8 106 122 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2 6.1098E-06 79.875 2 1.2765 1.2512 NaN 1 Median 1.2765 1.2512 NaN 1 0 Median NaN NaN NaN 0 0 Median 32574000 8746400 23828000 32574000 8746400 23828000 0 0 0 8620 209 8821 22906;22907 35931;35932;35933;35934 35933 4 LPGGHQTVLFSATLPK FEMGFAEQLQEIIARLPGGHQTVLFSATLP PGGHQTVLFSATLPKLLVEFARAGLTEPVL R L P P K L 1 0 0 0 0 1 0 2 1 0 3 1 0 1 2 1 2 0 0 1 0 0 16 0 1664.925 Q8TDD1;F8VRX4 Q8TDD1 268 283 DDX54 ATP-dependent RNA helicase DDX54 yes no 3 0.00017563 48.907 2 2 1.1355 1.0823 11.489 4 Median 0.89714 0.98089 8.74 2 0 Median 1.4482 1.1641 5.1359 2 0 Median 101020000 48111000 52908000 80579000 40272000 40307000 20440000 7839000 12601000 8621 1933 8822 22908;22909;22910;22911 35935;35936;35937;35938;35939;35940;35941;35942 35939 8 LPGGPTLTFQVK ILSKTETNVYFKLMRLPGGPTLTFQVKKYS LMRLPGGPTLTFQVKKYSLVRDVVSSLRRH R L P V K K 0 0 0 0 0 1 0 2 0 0 2 1 0 1 2 0 2 0 0 1 0 0 12 0 1256.7129 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 102 113 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 1.3822E-12 128.81 2 1 0.88308 1.0052 0.88469 3 Median 0.87946 1.0019 0.47351 2 0 Median 1.2298 1.0162 NaN 1 0 Median 372760000 194970000 177790000 329530000 176780000 152750000 43223000 18190000 25033000 8622 493 8823 22912;22913;22914 35943;35944;35945;35946;35947 35945 5 LPGHAGSINEVAFHPDEPIIISASSDK FVYVWDTTSRRILYKLPGHAGSINEVAFHP FHPDEPIIISASSDKRLYMGEIQ_______ K L P D K R 3 0 1 2 0 0 2 2 2 4 1 1 0 1 3 4 0 0 0 1 0 0 27 0 2800.4032 B2R9I9;A0MNP2;Q96DI7;Q9NSS8 B2R9I9 323 349 WDR57;SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 4 0.0022296 29.346 2 1 1.0498 0.82371 NaN 1 Median NaN NaN NaN 0 0 Median 1.0498 0.82371 NaN 1 0 Median 41501000 21782000 19720000 30105000 16656000 13449000 11396000 5125800 6270700 8623 643 8824 22915;22916;22917 35948;35949;35950;35951 35950 4 LPGPAPDKPNVYDFK RGFSVRSFGTGTHVKLPGPAPDKPNVYDFK LPGPAPDKPNVYDFKTTYDQMYNDLLRKDK K L P F K T 1 0 1 2 0 0 0 1 0 0 1 2 0 1 4 0 0 0 1 1 0 0 15 1 1656.8512 B4DMK6;Q9NP77 B4DMK6 44 58 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 yes no 3 0.010164 50.843 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5127300 0 5127300 5127300 0 5127300 0 0 0 8624 1006 8825 22918 35952 35952 1 LPHLEAVVIGR VCWLVRQDSRHQRIRLPHLEAVVIGRGPET QRIRLPHLEAVVIGRGPETKITDKKCSRQQ R L P G R G 1 1 0 0 0 0 1 1 1 1 2 0 0 0 1 0 0 0 0 2 0 0 11 0 1202.7135 F8W6G5;C9JZ40;F5HRF8;A0A0A0MRW7;Q7Z2E3;F8WBD6;E7EUY4;F8WBM3;Q6JV79;E7EVB7;C9J8U3 F8W6G5 33 43 APTX Aprataxin yes no 3 0.0075334 61.213 1 0.69077 0.6866 NaN 1 Median 0.69077 0.6866 NaN 1 0 Median NaN NaN NaN 0 0 Median 8500400 4532800 3967700 8500400 4532800 3967700 0 0 0 8625 472 8826 22919 35953 35953 0 LPHLLLYGPPGTGK QDILSTIQKFINEDRLPHLLLYGPPGTGKT RLPHLLLYGPPGTGKTSTILACAKQLYKDK R L P G K T 0 0 0 0 0 0 0 3 1 0 4 1 0 0 3 0 1 0 1 0 0 0 14 0 1461.8344 Q6LES9;A8K3S0;Q59GW7;P40937;C9JH72;F5H304;F5H0U6 Q6LES9 53 66 RFC5 Replication factor C subunit 5 yes no 3 0.049993 22.991 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10235000 10235000 0 10235000 10235000 0 0 0 0 8626 726 8827 22920 35954 35954 1 LPHSVTCSLCGEVDQNEETQDFEK RMKQSCVLRQCLAPRLPHSVTCSLCGEVDQ CGEVDQNEETQDFEKKLMECCICNEIVHPG R L P E K K 0 0 1 2 2 2 4 1 1 0 2 1 0 1 1 2 2 0 0 2 0 0 24 0 2821.2171 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 597 620 KDM2A Lysine-specific demethylase 2A yes no 3 6.435E-06 41.166 1 1 0.47768 0.42626 3.9909 2 Median 0.43594 0.43846 NaN 1 0 Median 0.52342 0.4144 NaN 1 0 Median 26474000 15695000 10779000 16051000 8899000 7152400 10423000 6796300 3626800 8627 1323 8828 22921;22922 35955;35956;35957;35958;35959;35960 35956 6 LPHVLLLQLGTTFFK MRRTVEGVLIVHEHRLPHVLLLQLGTTFFK LPHVLLLQLGTTFFKLPGGELNPGEDEVEG R L P F K L 0 0 0 0 0 1 0 1 1 0 5 1 0 2 1 0 2 0 0 1 0 0 15 0 1726.0182 B2R6U8;A0A024R6W2;O43809;H3BV41;H3BND3 B2R6U8 91 105 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 3 2.0829E-06 95.428 2 1.0236 1.0219 1.6468 2 Median 1.0236 1.0219 1.6468 2 0 Median NaN NaN NaN 0 0 Median 25073000 10807000 14266000 25073000 10807000 14266000 0 0 0 8628 209 8829 22923;22924 35961;35962;35963;35964 35964 4 LPIFFFGTHET VDEVPDGAVKPPTNKLPIFFFGTHET____ PTNKLPIFFFGTHET_______________ K L P E T - 0 0 0 0 0 0 1 1 1 1 1 0 0 3 1 0 2 0 0 0 0 0 11 0 1307.655 Q8N4N4 Q8N4N4 40 50 PSIP1 yes yes 2 0.0025071 73.931 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3390200 0 0 3390200 0 0 0 0 0 8629 1908 8830 22925 35965 35965 1 LPIFFFGTHETAFLGPK VDEVPDGAVKPPTNKLPIFFFGTHETAFLG IFFFGTHETAFLGPKDIFPYSENKEKYGKP K L P P K D 1 0 0 0 0 0 1 2 1 1 2 1 0 4 2 0 2 0 0 0 0 0 17 0 1921.0138 O75475;Q05CM9 O75475 40 56 PSIP1 PC4 and SFRS1-interacting protein yes no 2;3 3.192E-11 102.78 3 2 0.7061 0.76452 23.389 5 Median 0.6779 0.76452 9.6479 3 0 Plateau 1.2298 1.0429 2.2481 2 0 Median 211160000 107670000 103490000 90856000 52446000 38410000 120300000 55221000 65079000 8630 1405 8831 22926;22927;22928;22929;22930 35966;35967;35968;35969;35970;35971;35972;35973;35974;35975;35976;35977 35974 12 LPIGDVATQYFADR LEKIHHSGAKVVLSKLPIGDVATQYFADRD KLPIGDVATQYFADRDMFCAGRVPEEDLKR K L P D R D 2 1 0 2 0 1 0 1 0 1 1 0 0 1 1 0 1 0 1 1 0 0 14 0 1564.7886 Q6IBT3;Q53HV2;Q99832;B7Z7I4;B7Z1C9 Q6IBT3 293 306 CCT7 T-complex protein 1 subunit eta yes no 2 0.0082904 53.237 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6052600 0 6052600 6052600 0 6052600 0 0 0 8631 1791 8832 22931 35978 35978 1 LPISDSPPDTQEIHVIEQEK EVGVLKESVDLPEEKLPISDSPPDTQEIHV SPPDTQEIHVIEQEKLEAQDSGEEARNLSF K L P E K L 0 0 0 2 0 2 3 0 1 3 1 1 0 0 3 2 1 0 0 1 0 0 20 0 2274.138 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1508 1527 AHCTF1 Protein ELYS yes no 3 0.00017698 50.883 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4295700 0 4295700 0 0 0 4295700 0 4295700 8632 1945 8833 22932;22933 35979;35980 35980 2 LPITCLTIPPR LLNDEFFTSGYIPARLPITCLTIPPRFSIA IPARLPITCLTIPPRFSIAPSSLDPSNRKP R L P P R F 0 1 0 0 1 0 0 0 0 2 2 0 0 0 3 0 2 0 0 0 0 0 11 0 1279.7322 P53350;B2R841;B4E083;Q59GD0;D3DWF3;I3L2H5 P53350 314 324 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 0.051608 43.308 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8633 1604 8834 22934 35981 35981 1 LPLAQVSAHPWVR QDLISKLLRHNPSERLPLAQVSAHPWVRAN ERLPLAQVSAHPWVRANSRRVLPPSALQSV R L P V R A 2 1 0 0 0 1 0 0 1 0 2 0 0 0 2 1 0 1 0 2 0 0 13 0 1472.8252 B2RC06;J3KT86;Q96GD4 Q96GD4 316 328 AURKB Aurora kinase B no no 3 1.2714E-05 80.469 2 2 1.2174 1.2335 35.798 4 Median 0.76671 0.88961 5.4583 2 0 Median 1.9074 1.6498 0.35769 2 0 Median 474590000 258840000 215750000 393680000 230230000 163450000 80912000 28612000 52300000 8634 881;1967 8835 22935;22936;22937;22938 35982;35983;35984;35985;35986;35987;35988;35989 35982 8 LPLATIVK PKAAKTPLKIHPLVRLPLATIVKDLVAQAP KIHPLVRLPLATIVKDLVAQAPLKPKTPRG R L P V K D 1 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 8 0 853.56369 A0A024R534;O94776 A0A024R534 515 522 MTA2 Metastasis-associated protein MTA2 yes no 2 0.014674 62.464 2 0.77479 0.86938 2.04 2 Median 0.77479 0.86938 2.04 2 0 Median NaN NaN NaN 0 0 Median 228610000 130740000 97875000 228610000 130740000 97875000 0 0 0 8635 168 8836 22939;22940 35990;35991;35992 35991 3 LPLFPEPLHVFAPR TRRRAIILAAAPGEKLPLFPEPLHVFAPRA KLPLFPEPLHVFAPRACQLSVVVDDKKFVS K L P P R A 1 1 0 0 0 0 1 0 1 0 3 0 0 2 4 0 0 0 0 1 0 0 14 0 1631.9188 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0;K7ENW7 A0A024R7E3 1386 1399 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 3 2.2366E-05 89.629 2 2 0.72216 0.67099 17.385 4 Median 0.55364 0.57022 6.8776 2 0 Median 0.92944 0.76384 2.1895 2 0 Median 66723000 41418000 25306000 44704000 28722000 15982000 22019000 12696000 9323400 8636 222 8837 22941;22942;22943;22944 35993;35994;35995;35996;35997;35998;35999;36000 35999 8 LPLILVGNK RWIPLINERTDKDSRLPLILVGNKSDLVEY TDKDSRLPLILVGNKSDLVEYSSMETILPI R L P N K S 0 0 1 0 0 0 0 1 0 1 3 1 0 0 1 0 0 0 0 1 0 0 9 0 965.62735 H7BXZ6;Q8IXI2 H7BXZ6 90 98 RHOT1 Mitochondrial Rho GTPase;Mitochondrial Rho GTPase 1 yes no 2 0.024544 54.774 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8637 1310 8838 22945 36001 36001 1 LPLISGFYK WVYSFSYELILQSTRLPLISGFYKLLSITV ILQSTRLPLISGFYKLLSITVRNAKKIKYF R L P Y K L 0 0 0 0 0 0 0 1 0 1 2 1 0 1 1 1 0 0 1 0 0 0 9 0 1036.5957 P78527;B4DL41 P78527 660 668 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0035543 71.501 2 2 0.69427 0.4388 56.51 4 Linear 0.65915 0.72199 4.4164 2 0 Median 0.34149 0.27162 1.8273 2 0 Median 118850000 72996000 45854000 92480000 53964000 38516000 26371000 19033000 7338300 8638 1665 8839 22946;22947;22948;22949 36002;36003;36004;36005;36006;36007;36008;36009;36010;36011 36008 10 LPLLSR PGRDSTEYFIVFEPRLPLLSRTLEPYILPF EYFIVFEPRLPLLSRTLEPYILPFMFYNDV R L P S R T 0 1 0 0 0 0 0 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 6 0 697.44866 A6NHR9;J3KTL8;B4DDM9;Q0VGE6;Q96LW0;B3KXL7;B1AL16;Q6TDP4;Q8IX21 A6NHR9 1597 1602 SMCHD1;KLHL17;FAM178A Structural maintenance of chromosomes flexible hinge domain-containing protein 1;Kelch-like protein 17;Protein FAM178A yes no 2 0.0065028 138.53 1 1.0184 1.0237 NaN 1 Median 1.0184 1.0237 NaN 1 0 Median NaN NaN NaN 0 0 Median 15928000 8882900 7045300 15928000 8882900 7045300 0 0 0 8639 684 8840 22950 36012 36012 1 LPLPSPALEYTLGSR VSVQDRYDRATSSGRLPLPSPALEYTLGSR LPLPSPALEYTLGSRLANGLGREEAVAEGA R L P S R L 1 1 0 0 0 0 1 1 0 0 4 0 0 0 3 2 1 0 1 0 0 0 15 0 1612.8825 B2RCD8;Q8IU81 B2RCD8 121 135 IRF2BP1 Interferon regulatory factor 2-binding protein 1 yes no 2 0.00021979 63.408 1 1.6477 1.7067 NaN 1 Median 1.6477 1.7067 NaN 1 0 Median NaN NaN NaN 0 0 Median 10350000 3096700 7253000 10350000 3096700 7253000 0 0 0 8640 882 8841 22951 36013;36014;36015;36016 36014 4 LPLQDVYK DCILPPTRPTDKPLRLPLQDVYKIGGIGTV PTDKPLRLPLQDVYKIGGIGTVPVGRVETG R L P Y K I 0 0 0 1 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 8 0 974.54368 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q9NZS6;Q6P4C9;B4E2C5;A0A087WV01;Q9H2I7;Q96C29;Q8TBL1;Q6P082;Q96CD8;A9X7H1;Q05639;Q59GP5;Q53HR1 Q6IPT9 248 255 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2 0.0021172 102.72 3 2 2.0456 2.0382 40.19 4 Median 2.4272 2.8825 0.9724 2 0 Median 1.7068 1.4373 1.3548 2 0 Median 1823900000 546520000 1277400000 1716800000 508120000 1208600000 107160000 38399000 68761000 8641 1658;1790 8842 22952;22953;22954;22955;22956 36017;36018;36019;36020;36021;36022;36023;36024;36025;36026;36027;36028;36029;36030;36031;36032;36033;36034 36021 18 LPLQLDDAVRPEAEGEEEGR LHVQKIYVISLAEPRLPLQLDDAVRPEAEG DDAVRPEAEGEEEGRATVNQDTRLDNRVID R L P G R A 2 2 0 2 0 1 5 2 0 0 3 0 0 0 2 0 0 0 0 1 0 0 20 1 2222.0815 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85 D3DP78 119 138 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 1.3283E-23 128.14 2 2 1.0487 1.0749 48.197 4 Median 1.3988 1.5727 0.86705 2 0 Median 0.78281 0.68693 10.361 2 0 Median 175910000 75467000 100450000 153680000 63667000 90013000 22233000 11800000 10433000 8642 610 8843 22957;22958;22959;22960 36035;36036;36037;36038;36039;36040;36041;36042;36043;36044 36036 10 LPLQSQVGQYNQPEVPVR HPSQHVMQYTNAATKLPLQSQVGQYNQPEV QSQVGQYNQPEVPVRSPMQFHQNFSPISNP K L P V R S 0 1 1 0 0 4 1 1 0 0 2 0 0 0 3 1 0 0 1 3 0 0 18 0 2051.08 W5ZR30;Q9UGU0 W5ZR30 338 355 TCF20 Transcription factor 20 yes no 2 0.043407 37.613 1 1 2.6712 2.3151 NaN 1 Median NaN NaN NaN 0 0 Median 2.6712 2.3151 NaN 1 0 Median 2677900 743180 1934700 0 0 0 2677900 743180 1934700 8643 2100 8844 22961;22962 36045;36046 36045 2 LPLSLYK RRVFQAMWLSFLKHKLPLSLYKKVLLIVHD WLSFLKHKLPLSLYKKVLLIVHDAILPQLA K L P Y K K 0 0 0 0 0 0 0 0 0 0 3 1 0 0 1 1 0 0 1 0 0 0 7 0 832.50584 Q9BVI4;F5H303 Q9BVI4 264 270 NOC4L Nucleolar complex protein 4 homolog yes no 2 0.026944 83.614 2 0.89235 0.88845 6.0188 2 Median 0.89235 0.88845 6.0188 2 0 Median NaN NaN NaN 0 0 Median 51170000 24317000 26853000 51170000 24317000 26853000 0 0 0 8644 2007 8845 22963;22964 36047;36048 36047 2 LPLTPVFEGLAFK AGLFDTAISLCQTFKLPLTPVFEGLAFKCI FKLPLTPVFEGLAFKCIKLQFGGEAAQAEA K L P F K C 1 0 0 0 0 0 1 1 0 0 3 1 0 2 2 0 1 0 0 1 0 0 13 0 1430.8173 G3V198;Q12769 G3V198 1202 1214 NUP160 Nuclear pore complex protein Nup160 yes no 2 8.0557E-06 102.52 2 1.1058 1.1598 0.45464 2 Median 1.1058 1.1598 0.45464 2 0 Median NaN NaN NaN 0 0 Median 34681000 16136000 18545000 34681000 16136000 18545000 0 0 0 8645 1271 8846 22965;22966 36049;36050;36051;36052 36052 4 LPLVTPHTQCR GKKKKKTKGPDAASKLPLVTPHTQCRLKLL AASKLPLVTPHTQCRLKLLKLERIKDYLLM K L P C R L 0 1 0 0 1 1 0 0 1 0 2 0 0 0 2 0 2 0 0 1 0 0 11 0 1320.6972 Q53XL8;Q53HB3;P62191 Q53XL8 49 59 PSMC1 26S protease regulatory subunit 4 yes no 3 0.0064741 52.693 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7759300 0 7759300 7759300 0 7759300 0 0 0 8646 1634 8847 22967 36053 36053 1 LPLVVEDFVK XPSVCELVRAPGFARLPLVVEDFVKDSGAC PGFARLPLVVEDFVKDSGACFSASEPDAVH R L P V K D 0 0 0 1 0 0 1 0 0 0 2 1 0 1 1 0 0 0 0 3 0 0 10 0 1157.6696 H0YER3;H0YE25;H0YF25;B7Z1J9;B7ZKW3;B7ZKW4;Q8NB37 H0YER3 16 25 PDDC1 Parkinson disease 7 domain-containing protein 1 yes no 2 0.0024494 80.438 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4661100 0 4661100 4661100 0 4661100 0 0 0 8647 1084 8848 22968;22969 36054;36055 36054 2 LPNFGFVVFDDSEPVQK SYGNVVELRINSGGKLPNFGFVVFDDSEPV NFGFVVFDDSEPVQKVLSNRPIMFRGEVRL K L P Q K V 0 0 1 2 0 1 1 1 0 0 1 1 0 3 2 1 0 0 0 3 0 0 17 0 1936.9571 Q6FI03;Q5U0Q1;Q13283;B7Z8K4;Q6ZP53;Q53HH4 Q6FI03 377 393 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2 8.8307E-19 122.66 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19440000 0 19440000 19440000 0 19440000 0 0 0 8648 1710 8849 22970;22971 36056;36057;36058 36058 3 LPNFGFVVFDDSEPVQR NVVELRINTKGVGGKLPNFGFVVFDDSEPV NFGFVVFDDSEPVQRILIAKPIMFRGEVRL K L P Q R I 0 1 1 2 0 1 1 1 0 0 1 0 0 3 2 1 0 0 0 3 0 0 17 0 1964.9632 A0A024RDB2;A0A024RDE5;Q9UN86;A8K6V7 A0A024RDB2 338 354 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 2 2.0461E-05 83.617 2 1.9448 1.9328 14.195 2 Median 1.9448 1.9328 14.195 2 0 Median NaN NaN NaN 0 0 Median 23170000 8251900 14918000 23170000 8251900 14918000 0 0 0 8649 382 8850 22972;22973 36059;36060;36061 36059 3 LPNFLSVEPR PKVNTDLGNDLYFVKLPNFLSVEPRPFDPQ LYFVKLPNFLSVEPRPFDPQYYEDEFEDEE K L P P R P 0 1 1 0 0 0 1 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 10 0 1170.6397 B4DNM0;Q8WVC0 B4DNM0 356 365 LEO1 RNA polymerase-associated protein LEO1 yes no 2 4.1608E-08 117.53 2 1.5991 1.7423 10.39 2 Median 1.5991 1.7423 10.39 2 0 Median NaN NaN NaN 0 0 Median 106030000 38257000 67769000 106030000 38257000 67769000 0 0 0 8650 1012 8851 22974;22975 36062;36063;36064;36065 36063 4 LPNLLGR TMVGNNEGSMVLGLKLPNLLGRAEKVTFQF GSMVLGLKLPNLLGRAEKVTFQFSYGTKET K L P G R A 0 1 1 0 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 7 0 781.48102 Q9Y512 Q9Y512 149 155 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.00015331 148.37 2 1.143 1.2279 8.8414 2 Median 1.143 1.2279 8.8414 2 0 Median NaN NaN NaN 0 0 Median 79142000 33899000 45243000 79142000 33899000 45243000 0 0 0 8651 2147 8852 22976;22977 36066;36067;36068 36067 3 LPNNHIGISFIPR IKAPSGRDEPCLLKRLPNNHIGISFIPREV KRLPNNHIGISFIPREVGEHLVSIKKNGNH R L P P R E 0 1 2 0 0 0 0 1 1 3 1 0 0 1 2 1 0 0 0 0 0 0 13 0 1476.8201 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1957 1969 FLNB;DKFZp686A1668 Filamin-B yes no 3 0.037483 21.246 1 1.5278 1.5864 NaN 1 Median 1.5278 1.5864 NaN 1 0 Median NaN NaN NaN 0 0 Median 13601000 4807400 8793300 13601000 4807400 8793300 0 0 0 8652 1402 8853 22978 36069 36069 1 LPPDVLR LPAELPAKRVRGKARLPPDVLRWVELAKLY KRVRGKARLPPDVLRWVELAKLYRSIGEYD R L P L R W 0 1 0 1 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 1 0 0 7 0 808.48069 P78527 P78527 2916 2922 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.026656 75.311 1 0.65758 0.66126 NaN 1 Median 0.65758 0.66126 NaN 1 0 Median NaN NaN NaN 0 0 Median 17347000 10928000 6419300 17347000 10928000 6419300 0 0 0 8653 1665 8854 22979 36070 36070 1 LPPFETFSQGPTLQFTLR SKKRATWETILDGKRLPPFETFSQGPTLQF FETFSQGPTLQFTLRWTGETNDKSTAPIAK R L P L R W 0 1 0 0 0 2 1 1 0 0 3 0 0 3 3 1 3 0 0 0 0 0 18 0 2078.0837 J3QQW9;Q15022;A8K1U9 J3QQW9 320 337 SUZ12 Polycomb protein SUZ12 yes no 2 3.9612E-05 61.212 2 0.99634 1.0072 6.9112 2 Median 0.99634 1.0072 6.9112 2 0 Median NaN NaN NaN 0 0 Median 34211000 16659000 17552000 34211000 16659000 17552000 0 0 0 8654 1336 8855 22980;22981 36071;36072;36073 36071 3 LPPGFSASSTVEK QPLARPNTLTLVHVRLPPGFSASSTVEKPS VRLPPGFSASSTVEKPSKVHRALYSKGILL R L P E K P 1 0 0 0 0 0 1 1 0 0 1 1 0 1 2 3 1 0 0 1 0 0 13 0 1318.6769 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 354 366 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.00013042 90.05 2 1.5882 1.7088 2.1017 2 Median 1.5882 1.7088 2.1017 2 0 Median NaN NaN NaN 0 0 Median 71352000 30010000 41341000 71352000 30010000 41341000 0 0 0 8655 39 8856 22982;22983 36074;36075 36074 2 LPPLPTIR ______________________________ GKLSTCRLPPLPTIREIIKLLRLQAAKQLS R L P I R E 0 1 0 0 0 0 0 0 0 1 2 0 0 0 3 0 1 0 0 0 0 0 8 0 905.56984 E5KTM5;Q8WVM0 E5KTM5 12 19 TFB1M Dimethyladenosine transferase 1, mitochondrial yes no 2 0.0098384 73.616 2 1.31 1.3041 20.009 2 Median 1.31 1.3041 20.009 2 0 Median NaN NaN NaN 0 0 Median 17282000 7269200 10013000 17282000 7269200 10013000 0 0 0 8656 1210 8857 22984;22985 36076;36077 36077 2 LPPNTNDEVDEDPTGNK TVAGADKFGNICVVRLPPNTNDEVDEDPTG PNTNDEVDEDPTGNKALWDRGLLNGASQKA R L P N K A 0 0 3 3 0 0 2 1 0 0 1 1 0 0 3 0 2 0 0 1 0 0 17 0 1853.8279 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 1058 1074 SF3B3 Splicing factor 3B subunit 3 yes no 2 2.6979E-08 105 4 1.2674 1.2994 1.2713 2 Median 1.2674 1.2994 1.2713 2 0 Median NaN NaN NaN 0 0 Median 28226000 10419000 17808000 28226000 10419000 17808000 0 0 0 8657 764 8858 22986;22987;22988;22989 36078;36079;36080;36081;36082 36082 5 LPPPLSAPVAGLAALK VLKTARKDLGAPASKLPPPLSAPVAGLAAL PPPLSAPVAGLAALKAHAKEACGGPSAMAT K L P L K A 4 0 0 0 0 0 0 1 0 0 4 1 0 0 4 1 0 0 0 1 0 0 16 0 1513.9232 Q14781 Q14781 200 215 CBX2 Chromobox protein homolog 2 yes yes 2 0.00046826 67.153 2 0.81047 0.81608 NaN 1 Median 0.81047 0.81608 NaN 1 0 Median NaN NaN NaN 0 0 Median 19986000 14826000 5159900 19986000 14826000 5159900 0 0 0 8658 1744 8859 22990;22991 36083;36084;36085 36083 3 LPPQSCLLLPPTPVR TEKEKNPVAPAPDPRLPPQSCLLLPPTPVR LPPQSCLLLPPTPVRGGQKAVVSRKTNMHI R L P V R G 0 1 0 0 1 1 0 0 0 0 4 0 0 0 5 1 1 0 0 1 0 0 15 0 1686.9491 O75691 O75691 2053 2067 UTP20 Small subunit processome component 20 homolog yes yes 2 0.02503 29.299 2 1.6189 1.3713 7.457 2 Median NaN NaN NaN 0 0 Median 1.6189 1.3713 7.457 2 0 Median 7633700 3074000 4559700 0 0 0 7633700 3074000 4559700 8659 1412 8860 22992;22993 36086;36087 36086 2 LPPQTLEGDPGAEGEEGTTTVR SARQNIRHYLSEELRLPPQTLEGDPGAEGE GDPGAEGEEGTTTVRKRSCFPASLTASRGP R L P V R K 1 1 0 1 0 1 4 4 0 0 2 0 0 0 3 0 4 0 0 1 0 0 22 0 2253.0761 A8K5Q1;Q7L2J0 A8K5Q1 497 518 MEPCE 7SK snRNA methylphosphate capping enzyme yes no 2 3.0322E-05 64.394 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2804100 2804100 0 2804100 2804100 0 0 0 0 8660 751 8861 22994;22995 36088;36089 36089 2 LPPVVPLPPPTLR RAPELVTKKFPVDLRLPPVVPLPPPTLREL LRLPPVVPLPPPTLRELELQRRPTGDFGFS R L P L R E 0 1 0 0 0 0 0 0 0 0 3 0 0 0 6 0 1 0 0 2 0 0 13 0 1394.865 A0A0D9SFK2;A0A024QZ63;Q92614 A0A0D9SFK2 207 219 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.0043798 61.65 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4135600 0 4135600 4135600 0 4135600 0 0 0 8661 12 8862 22996;22997 36090;36091 36091 2 LPPYSAGDGAELSTPGGK ELLSSDMKKDFIMHRLPPYSAGDGAELSTP YSAGDGAELSTPGGKLPRLDSVVRLQFKDH R L P G K L 2 0 0 1 0 0 1 4 0 0 2 1 0 0 3 2 1 0 1 0 0 0 18 0 1715.8366 Q8IUF8 Q8IUF8 339 356 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2 0.0044992 51.875 1 0.52458 0.53909 NaN 1 Median 0.52458 0.53909 NaN 1 0 Median NaN NaN NaN 0 0 Median 10683000 6013700 4668900 10683000 6013700 4668900 0 0 0 8662 1891 8863 22998 36092 36092 0 LPQEQSQLPNPSEASTTFPESHLR KKKTNPRNNDPKSMKLPQEQSQLPNPSEAS NPSEASTTFPESHLRTPQMPPTTPSSSFFT K L P L R T 1 1 1 0 0 3 3 0 1 0 3 0 0 1 4 4 2 0 0 0 0 0 24 0 2692.3093 D3DUZ3 D3DUZ3 408 431 IFI16 yes yes 3 0.030329 23.913 2 1.4022 1.1916 9.6249 2 Median NaN NaN NaN 0 0 Median 1.4022 1.1916 9.6249 2 0 Median 5873700 2654000 3219700 0 0 0 5873700 2654000 3219700 8663 1196 8864 22999;23000 36093;36094 36094 0 LPQLPITNFSR KQTPKQRLLGWIQNKLPQLPITNFSRDWQS IQNKLPQLPITNFSRDWQSGRALGALVDSC K L P S R D 0 1 1 0 0 1 0 0 0 1 2 0 0 1 2 1 1 0 0 0 0 0 11 0 1284.719 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 180 190 FLNA Filamin-A yes no 2 0.00019291 93.111 2 1 1.4801 1.5636 3.0304 2 Median 1.4801 1.5636 3.0304 2 0 Median NaN NaN NaN 0 0 Median 53795000 21439000 32356000 53795000 21439000 32356000 0 0 0 8664 1504 8865 23001;23002;23003 36095;36096;36097;36098;36099 36097 5 LPQQDHTTTTDSEMEEPYLQESK GNLKKKYAQGFLPEKLPQQDHTTTTDSEME TTDSEMEEPYLQESKEEGAPLKLKCELCGR K L P S K E 0 0 0 2 0 3 4 0 1 0 2 1 1 0 2 2 4 0 1 0 0 0 23 0 2706.1967 B3KPJ4;B4DG61;B7ZLY0;A0A0A0MSI2;Q8IXK0;P78365 B3KPJ4 216 238 PHC2;HPH2 Polyhomeotic-like protein 2 yes no 3 1.7297E-05 53.998 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9286900 0 9286900 9286900 0 9286900 0 0 0 8665 479 8866 23004 36100 36100 329 1 LPQTEQELK TLKERKAAIRDIEGKLPQTEQELKEKEKEL RDIEGKLPQTEQELKEKEKELQKLTQEETN K L P L K E 0 0 0 0 0 2 2 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 9 0 1084.5764 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 548 556 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.3829E-11 152.34 2 2 1.1991 1.1707 23.589 4 Median 0.84794 0.95963 1.0604 2 0 Median 1.7085 1.4427 2.4732 2 0 Median 398160000 193440000 204720000 287660000 153980000 133680000 110510000 39461000 71045000 8666 2070 8867 23005;23006;23007;23008 36101;36102;36103;36104;36105;36106;36107;36108;36109;36110 36101 10 LPQVTR AVREGSPANWKRKEKLPQVTRSWHNYTCNC PANWKRKEKLPQVTRSWHNYTCNCVIQDFQ K L P T R S 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 6 0 712.42317 Q6FI97;Q53FS0;O96019;D3DNS0 Q6FI97 243 248 BAF53A;ACTL6A Actin-like protein 6A yes no 2 0.022456 131.65 2 0.76688 0.82464 8.6168 2 Median 0.76688 0.82464 8.6168 2 0 Median NaN NaN NaN 0 0 Median 81407000 46842000 34565000 81407000 46842000 34565000 0 0 0 8667 1434 8868 23009;23010 36111;36112 36111 2 LPQYLER KLVEQLDIEETEQSKLPQYLERFKALHSKL IEETEQSKLPQYLERFKALHSKLQALGKIE K L P E R F 0 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 7 0 917.49707 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;B4DKI9;D6RH20;Q8N6F2 Q6PKB3 135 141 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.026682 76.035 1 1.5385 1.6613 NaN 1 Median 1.5385 1.6613 NaN 1 0 Median NaN NaN NaN 0 0 Median 26549000 8221600 18327000 26549000 8221600 18327000 0 0 0 8668 305 8869 23011 36113 36113 1 LPRPLTSSASAIR LARSTRPQAWVPREKLPRPLTSSASAIRKL EKLPRPLTSSASAIRKLMRKAELMGISTDI K L P I R K 2 2 0 0 0 0 0 0 0 1 2 0 0 0 2 3 1 0 0 0 0 0 13 1 1367.7885 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 565 577 PHF14 PHD finger protein 14 yes no 3 3.7778E-05 94.09 1 0.81707 0.93116 NaN 1 Median 0.81707 0.93116 NaN 1 0 Median NaN NaN NaN 0 0 Median 40373000 22250000 18122000 40373000 22250000 18122000 0 0 0 8669 590 8870 23012 36114;36115 36115 2 LPSAVAVSASALSAPLR L P L R 5 1 0 0 0 0 0 0 0 0 3 0 0 0 2 4 0 0 0 2 0 0 17 0 1608.9199 REV__D3DSN3 yes yes 2 0.0018751 55.314 3 1.4654 1.4991 0 2 Median 1.4654 1.4991 0 2 0 Median NaN NaN NaN 0 0 Median 65303000 18023000 47280000 65303000 18023000 47280000 0 0 0 + 8670 2173 8871 23013;23014;23015 36116;36117;36118 36116 2 LPSDVVTGYLALR KLRFSTIEEFSYIRRLPSDVVTGYLALRKA RRLPSDVVTGYLALRKATSIVP________ R L P L R K 1 1 0 1 0 0 0 1 0 0 3 0 0 0 1 1 1 0 1 2 0 0 13 0 1402.782 K7EQ79;Q6PI98;K7EIY8 K7EQ79 76 88 INO80C INO80 complex subunit C yes no 2 0.010062 54.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8671 1345 8872 23016 36119 36119 1 LPSEGPRPAHVVVGDVLQAADVDK QAGYEVTVLVRDSSRLPSEGPRPAHVVVGD HVVVGDVLQAADVDKTVAGQDAVIVLLGTR R L P D K T 3 1 0 3 0 1 1 2 1 0 2 1 0 0 3 1 0 0 0 5 0 0 24 1 2468.3023 V9HWI1;P30043;M0QZL1;M0R192 V9HWI1 40 63 HEL-S-10;BLVRB Flavin reductase (NADPH) yes no 4 0.0016834 29.158 1 1 3.9611 4.4811 NaN 1 Median 3.9611 4.4811 NaN 1 0 Median NaN NaN NaN 0 0 Median 19689000 5694300 13994000 15899000 5694300 10205000 3789700 0 3789700 8672 1528 8873 23017;23018 36120;36121 36120 2 LPSFELLHK CAIGLWTDISARILKLPSFELLHKEMLGGE SARILKLPSFELLHKEMLGGEIIPRSILMT K L P H K E 0 0 0 0 0 0 1 0 1 0 3 1 0 1 1 1 0 0 0 0 0 0 9 0 1082.6124 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 571 579 DDB1 DNA damage-binding protein 1 yes no 2;3 4.3603E-06 133.33 4 2 0.77648 0.88025 15.478 6 Median 0.72416 0.82173 6.7548 4 0 Median 1.3618 1.1004 11.602 2 0 Median 450340000 255570000 194760000 421140000 243150000 177990000 29192000 12420000 16773000 8673 1770 8874 23019;23020;23021;23022;23023;23024 36122;36123;36124;36125;36126;36127;36128;36129;36130;36131 36127 10 LPSGAYEGGALIK NHPYLFPVAAMESPKLPSGAYEGGALIKSS PKLPSGAYEGGALIKSSGKLMLLQKMLRKL K L P I K S 2 0 0 0 0 0 1 3 0 1 2 1 0 0 1 1 0 0 1 0 0 0 13 0 1274.6871 Q12873;B4DLC6 Q12873 1045 1057 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.001605 57.149 1 1 1.0587 0.96036 54.772 2 Median 0.64255 0.65198 NaN 1 0 Median 1.7444 1.4146 NaN 1 0 Median 16263000 8896700 7366600 13471000 7866900 5604300 2792000 1029800 1762300 8674 1701 8875 23025;23026 36132;36133;36134 36134 3 LPSGEVVSIGQLASLAQRPVANAGGSK PAPQRLILSPDMQARLPSGEVVSIGQLASL ASLAQRPVANAGGSKPLTFQIQGNKLTLTG R L P S K P 4 1 1 0 0 2 1 4 0 1 3 1 0 0 2 4 0 0 0 3 0 0 27 1 2605.4188 A0A0A0MS59;Q6ZRS2;A0A087X0E3;B3KN63 A0A0A0MS59 982 1008 SRCAP Helicase SRCAP yes no 3 0.038493 16.621 1 1.2594 1.0584 NaN 1 Median NaN NaN NaN 0 0 Median 1.2594 1.0584 NaN 1 0 Median 4653700 1983200 2670500 0 0 0 4653700 1983200 2670500 8675 476 8876 23027 36135 36135 1 LPSGSGAASPTGSAVDIR SNVDVETQSGKTVIRLPSGSGAASPTGSAV GSGAASPTGSAVDIRAGAISASGPELQGAG R L P I R A 3 1 0 1 0 0 0 3 0 1 1 0 0 0 2 4 1 0 0 1 0 0 18 0 1641.8322 Q09666;B4DTV0 Q09666 208 225 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 1.78E-06 120.29 2 1 2.7599 3.2083 72.716 3 Median 3.3632 3.7098 20.541 2 0 Median 1.2602 1.0799 NaN 1 0 Median 102120000 22463000 79660000 98802000 20629000 78173000 3321400 1833800 1487600 8676 1696 8877 23028;23029;23030 36136;36137;36138;36139;36140;36141 36138 6 LPSGVFSLEFQDFVNK IFELLDYIVNEPPPKLPSGVFSLEFQDFVN PSGVFSLEFQDFVNKCLIKNPAERADLKQL K L P N K C 0 0 1 1 0 1 1 1 0 0 2 1 0 3 1 2 0 0 0 2 0 0 16 0 1825.9251 B4DFY5;A4QPA9;Q02750;H3BRW9 B4DFY5 303 318 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 2 2.9245E-12 141.37 2 3.7353 3.7767 NaN 1 Median 3.7353 3.7767 NaN 1 0 Median NaN NaN NaN 0 0 Median 14595000 1677300 12917000 14595000 1677300 12917000 0 0 0 8677 674 8878 23031;23032 36142;36143 36143 2 LPSIPLVPVSAQK TRALMDSLGPEWRLKLPSIPLVPVSAQKRW LKLPSIPLVPVSAQKRWNSLPSENHKEMAK K L P Q K R 1 0 0 0 0 1 0 0 0 1 2 1 0 0 3 2 0 0 0 2 0 0 13 0 1347.8126 Q15785;B4DXU3 Q15785 144 156 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 0.0012243 58.699 2 2.5809 2.6523 1.2885 2 Median 2.5809 2.6523 1.2885 2 0 Median NaN NaN NaN 0 0 Median 26676000 8049900 18626000 26676000 8049900 18626000 0 0 0 8678 1765 8879 23033;23034 36144;36145 36145 2 LPSLALPEGLGEPQGPEGPGGR APDEQGLEARRQREKLPSLALPEGLGEPQG EGLGEPQGPEGPGGRVEEPLEGVGPWQCPE K L P G R V 1 1 0 0 0 1 3 6 0 0 4 0 0 0 5 1 0 0 0 0 0 0 22 0 2127.096 Q4VC44 Q4VC44 190 211 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes yes 2 2.7936E-11 92.265 2 2 1.1004 1.029 9.7998 4 Median 0.90722 0.95884 2.3268 2 0 Median 1.3654 1.1256 5.045 2 0 Median 94635000 46422000 48213000 62830000 32694000 30136000 31805000 13728000 18077000 8679 1781 8880 23035;23036;23037;23038 36146;36147;36148;36149;36150;36151 36148 6 LPSLGAGFSQGLK LSPQLQQLACECYSRLPSLGAGFSQGLKHT SRLPSLGAGFSQGLKHTESWEQELHSLLAS R L P L K H 1 0 0 0 0 1 0 3 0 0 3 1 0 1 1 2 0 0 0 0 0 0 13 0 1273.703 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;E7EV54;B4DEX7 O15451 212 224 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 0.0028283 52.167 2 0.87759 0.89757 NaN 1 Median 0.87759 0.89757 NaN 1 0 Median NaN NaN NaN 0 0 Median 17051000 11982000 5069100 17051000 11982000 5069100 0 0 0 8680 746 8881 23039;23040 36152;36153 36153 2 LPSNLPQLQNLIK ______________________________ NKLPSNLPQLQNLIKRDPPAYIEEFLQQYN K L P I K R 0 0 2 0 0 2 0 0 0 1 4 1 0 0 2 1 0 0 0 0 0 0 13 0 1476.8664 E7EW05;B4DT66;Q9NVU7;F8W8T7;D6RC74 E7EW05 9 21 SDAD1 Protein SDA1 homolog yes no 2 0.00024044 68.536 2 1 0.76124 0.73033 3.0725 3 Median 0.72274 0.73261 4.3377 2 0 Median 0.91331 0.73033 NaN 1 0 Median 26819000 14416000 12403000 17946000 9751000 8195400 8873000 4665400 4207600 8681 1032 8882 23041;23042;23043 36154;36155;36156 36155 3 LPSNTLDR GLQLIIRNFWSHETRLPSNTLDRLLALNSL FWSHETRLPSNTLDRLLALNSLYSPKIEVH R L P D R L 0 1 1 1 0 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 8 0 914.48214 P78527 P78527 2531 2538 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0078439 81.191 2 1 0.6519 0.73745 45.472 3 Plateau 0.65114 0.73595 3.8715 2 0 Median 0.41503 0.33529 NaN 1 0 Median 183080000 113270000 69811000 171620000 105240000 66389000 11454000 8032400 3422000 8682 1665 8883 23044;23045;23046 36157;36158;36159;36160;36161 36160 5 LPSRPGAQGVEPQNLR VQPSPAHVGQQGLSKLPSRPGAQGVEPQNL PSRPGAQGVEPQNLRTLQGHSVIRSATNTT K L P L R T 1 2 1 0 0 2 1 2 0 0 2 0 0 0 3 1 0 0 0 1 0 0 16 1 1717.9224 A0A0U1RRM1;Q8WXI9;B3KSZ4 A0A0U1RRM1 225 240 GATAD2B Transcriptional repressor p66-beta yes no 3 1.0244E-12 105.28 2 2 1.2028 1.1544 47.186 4 Median 0.68422 0.77212 3.7881 2 0 Median 1.9868 1.7439 5.2563 2 0 Median 206980000 114890000 92092000 189910000 109120000 80787000 17065000 5761000 11304000 8683 591 8884 23047;23048;23049;23050 36162;36163;36164;36165;36166;36167 36164 6 LPSSVFASEFEEDVGLLNK EEKEETLVIPSTGIKLPSSVFASEFEEDVG VFASEFEEDVGLLNKAAPVSGPRLDFDPDI K L P N K A 1 0 1 1 0 0 3 1 0 0 3 1 0 2 1 3 0 0 0 2 0 0 19 0 2080.0365 Q96GA3;B4DTT8 Q96GA3 109 127 LTV1 Protein LTV1 homolog yes no 2 2.115E-05 80.469 1 0.8807 0.89448 NaN 1 Median 0.8807 0.89448 NaN 1 0 Median NaN NaN NaN 0 0 Median 6230700 3404300 2826400 6230700 3404300 2826400 0 0 0 8684 1966 8885 23051 36168;36169 36168 2 LPSVALLLNDLK GRQSLVELLIRPVQRLPSVALLLNDLKKHT VQRLPSVALLLNDLKKHTADENPDKSTLEK R L P L K K 1 0 1 1 0 0 0 0 0 0 5 1 0 0 1 1 0 0 0 1 0 0 12 0 1294.786 Q9H8V3;Q96SJ9 Q9H8V3 600 611 ECT2 Protein ECT2 yes no 2 2.1627E-29 155.53 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12571000 0 12571000 12571000 0 12571000 0 0 0 8685 2043 8886 23052;23053 36170;36171 36171 2 LPTFGAPEQLVDLK KKSKKPPPVPALPSKLPTFGAPEQLVDLKQ KLPTFGAPEQLVDLKQAGLEAAAKATSSHP K L P L K Q 1 0 0 1 0 1 1 1 0 0 3 1 0 1 2 0 1 0 0 1 0 0 14 0 1526.8344 Q14258;Q59GW5;D3DTY9 Q14258 403 416 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 2 3.2513E-06 103.08 2 2 1.7235 2.1293 32.397 4 Linear 2.0471 2.0822 1.5769 2 0 Median 1.4765 1.1895 3.4123 2 0 Median 53925000 19448000 34477000 44601000 15400000 29201000 9323200 4047400 5275800 8686 1731;1802 8887 23054;23055;23056;23057 36172;36173;36174;36175;36176;36177;36178;36179 36173 8 LPTGAQQHSILLLLNR LNKNGLITMQSHVIRLPTGAQQHSILLLLN PTGAQQHSILLLLNRFHVDRRSKYDILMEK R L P N R F 1 1 1 0 0 2 0 1 1 1 5 0 0 0 1 1 1 0 0 0 0 0 16 0 1773.0261 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 231 246 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 4.7416E-05 53.169 1 2 1.2097 1.0366 13.234 3 Median 0.84177 0.85357 NaN 1 0 Median 1.2631 1.0674 4.1399 2 0 Median 28080000 13940000 14140000 15134000 8337500 6797000 12945000 5602300 7343100 8687 1699 8888 23058;23059;23060 36180;36181;36182 36181 3 LPTIDPNTR QSLEYLEQVRQHLSRLPTIDPNTRTLLLCG RQHLSRLPTIDPNTRTLLLCGYPNVGKSSF R L P T R T 0 1 1 1 0 0 0 0 0 1 1 0 0 0 2 0 2 0 0 0 0 0 9 0 1025.5506 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747;Q5T3R7 Q8N4P8 159 167 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0018009 80.684 3 2 1.5629 1.3449 1.0201 3 Median 1.1514 1.3375 NaN 1 0 Median 1.5634 1.3545 1.0099 2 0 Median 597420000 208790000 388630000 504100000 173210000 330900000 93320000 35584000 57736000 8688 1183 8889 23061;23062;23063;23064;23065 36183;36184;36185;36186;36187;36188;36189 36186 7 LPTSGADPLCR VGVEEGLVNVGTGQKLPTSGADPLCRNPTN TGQKLPTSGADPLCRNPTNRSLKGKLMNSK K L P C R N 1 1 0 1 1 0 0 1 0 0 2 0 0 0 2 1 1 0 0 0 0 0 11 0 1185.5812 Q7Z5J4 Q7Z5J4 1391 1401 RAI1 Retinoic acid-induced protein 1 yes yes 2 0.04208 44.425 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8689 1879 8890 23066 36190 36190 1 LPTTAQQEDPEK QPDLAGLEALRQRERLPTTAQQEDPEKIQV RERLPTTAQQEDPEKIQVQLCFKTCSPESQ R L P E K I 1 0 0 1 0 2 2 0 0 0 1 1 0 0 2 0 2 0 0 0 0 0 12 0 1355.6569 Q4VC44;I3L188;J3KNW1;B3KRZ0;B3KPY2;B3KP60;I3L1A7;I3L287 Q4VC44 674 685 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 8.9209E-18 141.08 2 2 1.2445 1.0787 8.9979 4 Median 1.1354 1.1622 8.1033 2 0 Median 1.2873 1.0259 4.6532 2 0 Median 34931000 15198000 19734000 29777000 12880000 16897000 5154500 2317600 2836900 8690 1781 8891 23067;23068;23069;23070 36191;36192;36193;36194;36195 36191 5 LPVACPNQCGVGTVAR FVFDTIQSHQYQCPRLPVACPNQCGVGTVA PVACPNQCGVGTVAREDLPGHLKDSCNTAL R L P A R E 2 1 1 0 2 1 0 2 0 0 1 0 0 0 2 0 1 0 0 3 0 0 16 0 1697.8341 A0A024QZ59;Q9BUZ4;A0A024QZ19;B4DUU9;F6SA91 A0A024QZ59 217 232 TRAF4 TNF receptor-associated factor 4 yes no 2 0.005129 51.841 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8691 11 8892 23071 36196 36196 1 LPVATIFTTHATLLGR EWLAGVGLCLCRARRLPVATIFTTHATLLG PVATIFTTHATLLGRYLCAGAVDFYNNLEN R L P G R Y 2 1 0 0 0 0 0 1 1 1 3 0 0 1 1 0 4 0 0 1 0 0 16 0 1709.9828 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z8P0 P13807 196 211 GYS1 Glycogen [starch] synthase, muscle yes no 3 8.5123E-06 85.469 2 2 0.42154 0.38298 1.4597 4 Median 0.3858 0.38556 1.5403 2 0 Median 0.46782 0.38051 1.5099 2 0 Median 54670000 39709000 14961000 31071000 23062000 8009200 23599000 16647000 6952000 8692 1479 8893 23072;23073;23074;23075 36197;36198;36199;36200;36201;36202;36203;36204 36197 8 LPVDFSNIPTYLLK KNNWTGEFSARFLLKLPVDFSNIPTYLLKD KLPVDFSNIPTYLLKDVNEDPGEDVALLSV K L P L K D 0 0 1 1 0 0 0 0 0 1 3 1 0 1 2 1 1 0 1 1 0 0 14 0 1618.897 A2NFR5;F8W733;Q6ZWH1;Q9NXR7 A2NFR5 39 52 Hin-3;BRE BRCA1-A complex subunit BRE yes no 2 2.6687E-05 96.64 2 0.79371 0.81158 5.6647 2 Median 0.79371 0.81158 5.6647 2 0 Median NaN NaN NaN 0 0 Median 17492000 9173100 8319000 17492000 9173100 8319000 0 0 0 8693 652 8894 23076;23077 36205;36206;36207;36208 36206 4 LPVDIAYK QIATGGIIDPKESHRLPVDIAYKRGYFNEE DPKESHRLPVDIAYKRGYFNEELSEILSDP R L P Y K R 1 0 0 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 1 0 0 8 0 917.52222 P15924;Q4LE79 P15924 2386 2393 DSP;DSP variant protein Desmoplakin yes no 2 0.024726 55.676 1 1.6124 1.7894 NaN 1 Median 1.6124 1.7894 NaN 1 0 Median NaN NaN NaN 0 0 Median 48710000 17819000 30891000 48710000 17819000 30891000 0 0 0 8694 1486 8895 23078 36209 36209 1 LPVDLAEELGHR HRAGARLDVRDAWGRLPVDLAEELGHRDVA WGRLPVDLAEELGHRDVARHPRLKEPERL_ R L P H R D 1 1 0 1 0 0 2 1 1 0 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1347.7147 J3QRG6;K7PML8;P42771;K7ES20;L8E941;K7ENC6 J3QRG6 113 124 CDKN2A Cyclin-dependent kinase inhibitor 2A no no 3 0.00012952 71.241 2 1 1.7427 1.9787 30.796 3 Plateau 1.7056 1.8952 8.5911 2 0 Median 1.3016 1.1234 NaN 1 0 Median 124350000 48487000 75862000 121620000 47416000 74199000 2733600 1070600 1663000 8695 1339 8896 23079;23080;23081 36210;36211;36212;36213;36214 36210 5 LPVESVHILEDK DFTSAAQLASTPFHKLPVESVHILEDKENV FHKLPVESVHILEDKENVVAKQCTQATLDS K L P D K E 0 0 0 1 0 0 2 0 1 1 2 1 0 0 1 1 0 0 0 2 0 0 12 0 1377.7504 A0JLU2;B4DYG2;O43683;A8K5A6 A0JLU2 614 625 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 3 0.003779 45.115 2 0.94675 0.94183 5.6254 2 Median 0.94675 0.94183 5.6254 2 0 Median NaN NaN NaN 0 0 Median 33921000 18142000 15779000 33921000 18142000 15779000 0 0 0 8696 641 8897 23082;23083 36215;36216;36217 36215 3 LPVICMDISHDGALIATGSADR YVDTLKFFLSLYGHKLPVICMDISHDGALI ISHDGALIATGSADRNVKIWGLDFGDCHKS K L P D R N 3 1 0 3 1 0 0 2 1 3 2 0 1 0 1 2 1 0 0 1 0 0 22 0 2311.1301 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 592 613 WDR3 WD repeat-containing protein 3 yes no 3 8.0019E-13 87.772 2 1 2.2845 2.0103 NaN 1 Median NaN NaN NaN 0 0 Median 2.2845 2.0103 NaN 1 0 Median 56214000 15202000 41012000 52080000 13317000 38763000 4133600 1884500 2249100 8697 1827 8898;8899 23084;23085;23086 36218;36219;36220;36221 36218 1686 4 LPVLAGCLK GELKTQMTSAVREPKLPVLAGCLKGLSSLL AVREPKLPVLAGCLKGLSSLLCNFTKSMEE K L P L K G 1 0 0 0 1 0 0 1 0 0 3 1 0 0 1 0 0 0 0 1 0 0 9 0 969.56812 P78527;B4DL41 P78527 217 225 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0061036 65.038 2 2 0.60731 0.62901 50.93 4 Linear 0.59623 0.61281 3.4542 2 0 Median 0.3218 0.25419 5.1097 2 0 Median 65354000 42979000 22376000 56819000 36708000 20111000 8535300 6270200 2265100 8698 1665 8900 23087;23088;23089;23090 36222;36223;36224;36225 36222 4 LPVPAAAPTPWETHK LQAAAFLDFLWHNMKLPVPAAAPTPWETHK LPVPAAAPTPWETHKGALP___________ K L P H K G 3 0 0 0 0 0 1 0 1 0 1 1 0 0 4 0 2 1 0 1 0 0 15 0 1613.8566 Q12788;J3KNP2;A0JLS5 Q12788 790 804 TBL3 Transducin beta-like protein 3 yes no 3 0.0010319 42.317 2 1 0.63802 0.71331 14.441 3 Median 0.62297 0.70039 2.5849 2 0 Median 1.117 0.89764 NaN 1 0 Median 206640000 129260000 77379000 190060000 121870000 68188000 16574000 7382700 9191000 8699 1698 8901 23091;23092;23093 36226;36227;36228;36229;36230 36227 5 LPVVLPQSTLNLAKPDFGAEAK SPYSAPWKPTWPAYRLPVVLPQSTLNLAKP STLNLAKPDFGAEAKLEVSSSCGPQCHKGT R L P A K L 3 0 1 1 0 1 1 1 0 0 4 2 0 1 3 1 1 0 0 2 0 0 22 1 2307.2838 B3KQQ9;O95084;E9PRR2 B3KQQ9 37 58 PRSS23 Serine protease 23 yes no 3 2.603E-05 40.381 1 2 1.0235 0.8782 22.419 3 Median 0.54665 0.6055 NaN 1 0 Median 1.0373 0.89197 2.201 2 0 Median 14340000 7257700 7082300 4721100 2600600 2120500 9618800 4657000 4961800 8700 929 8902 23094;23095;23096 36231;36232;36233;36234;36235 36234 5 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR RRLSDKGLKAELMERLQAALDDEEAGGRPA PGNGSLDLGGDSAGRSGAGLEQEAAAGGDE R L Q G R S 5 2 1 4 0 1 3 7 0 0 4 0 1 0 2 2 0 0 0 0 0 0 32 1 3125.432 B4DLR3;Q00839;Q9UEL2 B4DLR3 38 69 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3 6.6494E-19 64.532 2 1.0541 1.1679 16.871 2 Median 1.0541 1.1679 16.871 2 0 Median NaN NaN NaN 0 0 Median 56556000 27622000 28934000 56556000 27622000 28934000 0 0 0 8701 999 8903 23097;23098 36236;36237 36237 789 2 LQAEAQQLR KELEVAEGGKAELERLQAEAQQLRKEERSW KAELERLQAEAQQLRKEERSWEQKLEEMRK R L Q L R K 2 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1055.5724 K7EQA9;Q6FG59;A0A024R7B7;Q16543;K7EKQ2 K7EQA9 84 92 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 0.0011339 95.909 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8702 218 8904 23099;23100 36238;36239 36239 2 LQAEEVAQQK LERWQLKANEALRLRLQAEEVAQQKSLAQA ALRLRLQAEEVAQQKSLAQAEAEKQKEEAE R L Q Q K S 2 0 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1142.5932 Q15149 Q15149 1783 1792 PLEC Plectin yes yes 2 1.6847E-08 122.52 1 2.0526 2.0724 NaN 1 Median 2.0526 2.0724 NaN 1 0 Median NaN NaN NaN 0 0 Median 28438000 10307000 18131000 28438000 10307000 18131000 0 0 0 8703 1754 8905 23101 36240;36241 36240 2 LQAEIDNIK NTRNEISEMNRAIQRLQAEIDNIKNQRAKL NRAIQRLQAEIDNIKNQRAKLEAAIAEAEE R L Q I K N 1 0 1 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1042.5659 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 318 326 KRT7 Keratin, type II cytoskeletal 7 no no 2 3.0707E-08 147.19 2 1 1.0445 1.2199 26.141 3 Plateau 1.0439 1.2158 1.1083 2 0 Median 0.97694 0.77322 NaN 1 0 Median 519410000 251090000 268320000 508950000 245930000 263020000 10455000 5156600 5298400 + 8704 1171;1158 8906 23102;23103;23104 36242;36243;36244;36245 36242 4 LQAELEGIK ______________________________ ______________________________ K L Q I K R 1 0 0 0 0 1 2 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 999.56006 L0R512 L0R512 5 13 NCAM2 yes yes 2 6.049E-06 114.39 6 2 1.874 1.5814 12.664 3 Median 1.0741 1.2817 NaN 1 0 Median 1.8934 1.5953 1.2323 2 0 Median 1285800000 390700000 895080000 1177800000 355360000 822470000 107940000 35335000 72604000 8705 1349 8907 23105;23106;23107;23108;23109;23110;23111;23112 36246;36247;36248;36249;36250;36251;36252;36253;36254;36255;36256;36257;36258;36259;36260 36252 15 LQAETEELEEEK AAAKCRNRRRELTEKLQAETEELEEEKSGL TEKLQAETEELEEEKSGLQKEIAELQKEKE K L Q E K S 1 0 0 0 0 1 6 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1446.6726 C9JCN8;P15408 C9JCN8 113 124 FOSL2 Fos-related antigen 2 yes no 2 0.00021683 82.171 2 1.066 0.86418 2.6231 2 Median NaN NaN NaN 0 0 Median 1.066 0.86418 2.6231 2 0 Median 12506000 5934300 6572000 0 0 0 12506000 5934300 6572000 8706 1132 8908 23113;23114 36261;36262;36263;36264 36262 4 LQAFGLNPK GPTVMLGGCEFSRQRLQAFGLNPKRLHFRQ EFSRQRLQAFGLNPKRLHFRQLGRQRRKQQ R L Q P K R 1 0 1 0 0 1 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 9 0 986.55492 Q8N9T8;A0A024R7C4;B4DUT2 Q8N9T8 674 682 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.0018358 80.229 1 0.78058 0.82934 NaN 1 Median 0.78058 0.82934 NaN 1 0 Median NaN NaN NaN 0 0 Median 23369000 13648000 9721100 23369000 13648000 9721100 0 0 0 8707 1916 8909 23115 36265 36265 1 LQAITASSANLR QRPTKELHGTSIVPKLQAITASSANLRHSP VPKLQAITASSANLRHSPRVLVQHCPARTP K L Q L R H 3 1 1 0 0 1 0 0 0 1 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1243.6884 I3VM54;I3VM53;Q9Y2K7 I3VM54 802 813 KDM2A Lysine-specific demethylase 2A yes no 2 0.00075596 85.533 2 3 0.54831 0.51461 24.919 2 Median 0.58738 0.61377 NaN 1 0 Median 0.51183 0.43147 NaN 1 0 Median 28958000 13903000 15055000 20351000 8198200 12153000 8606800 5704600 2902200 8708 1323 8910 23116;23117;23118;23119;23120 36266;36267;36268;36269;36270;36271;36272 36268 7 LQALANEQAAAAHELEK DIQNMNFLLKAEVQKLQALANEQAAAAHEL ALANEQAAAAHELEKMQQSVYVKDDKIRLL K L Q E K M 6 0 1 0 0 2 3 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 17 0 1805.9272 A0A024R663;Q86UP2 A0A024R663 654 670 KTN1 Kinectin yes no 3 3.3017E-05 59.281 2 0.44401 0.35364 4.4204 2 Median NaN NaN NaN 0 0 Median 0.44401 0.35364 4.4204 2 0 Median 9462200 5817800 3644400 0 0 0 9462200 5817800 3644400 8709 197 8911 23121;23122 36273;36274;36275;36276 36273 4 LQALDTGWNELHK TQGQTDAQYMFLRQRLQALDTGWNELHKMW QRLQALDTGWNELHKMWENRQNLLSQSHAY R L Q H K M 1 0 1 1 0 1 1 1 1 0 3 1 0 0 0 0 1 1 0 0 0 0 13 0 1523.7732 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1058 1070 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.017663 27.649 1 1.1903 1.1974 NaN 1 Median 1.1903 1.1974 NaN 1 0 Median NaN NaN NaN 0 0 Median 13547000 4964800 8581700 13547000 4964800 8581700 0 0 0 8710 415 8912 23123 36277 36277 1 LQAMHLER TQIRPTMFPPKDPEKLQAMHLERCLRILPH PPKDPEKLQAMHLERCLRILPHHQNTGGFF K L Q E R C 1 1 0 0 0 1 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 996.51748 Q08J23 Q08J23 401 408 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.014679 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3405200 0 3405200 3405200 0 3405200 0 0 0 8711 1694 8913 23124 36278 36278 1525 1 LQANISTGVSK KGPLSQEALMELFPKLQANISTGVSKIRLL LFPKLQANISTGVSKIRLLTIRILNHFDVQ K L Q S K I 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 1 0 0 1 0 0 11 0 1116.6139 O75691 O75691 634 644 UTP20 Small subunit processome component 20 homolog yes yes 2 2.3069E-12 140.45 2 2 1.4587 1.397 5.1824 4 Median 1.3005 1.4599 0.092773 2 0 Median 1.6595 1.3347 0.32427 2 0 Median 184400000 78933000 105470000 172540000 74392000 98151000 11857000 4541200 7315700 8712 1412 8914 23125;23126;23127;23128 36279;36280;36281;36282;36283;36284;36285 36280 7 LQAQLNELQAQLSQK AVQAQGGESQQEAQRLQAQLNELQAQLSQK LQAQLNELQAQLSQKEQAAEHYKLQMEKAK R L Q Q K E 2 0 1 0 0 5 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 15 0 1710.9264 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1575 1589 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 8.4492E-71 208.08 2 2 1.1489 1.0744 12.676 4 Median 0.92566 0.97268 4.209 2 0 Median 1.4761 1.1979 5.5242 2 0 Median 116840000 47811000 69025000 65826000 28285000 37541000 51010000 19527000 31483000 8713 186;1747 8915 23129;23130;23131;23132 36286;36287;36288;36289;36290;36291;36292;36293 36293 8 LQAQSLSTVGPR GLRERELEEIRAKLRLQAQSLSTVGPRLAS KLRLQAQSLSTVGPRLASEYLTPEEMVTFK R L Q P R L 1 1 0 0 0 2 0 1 0 0 2 0 0 0 1 2 1 0 0 1 0 0 12 0 1255.6884 O43290;B4DDH9 O43290 374 385 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 0.0017153 60.434 1 0.77637 0.76851 NaN 1 Median 0.77637 0.76851 NaN 1 0 Median NaN NaN NaN 0 0 Median 12324000 8418000 3905600 12324000 8418000 3905600 0 0 0 8714 1384 8916 23133 36294 36294 1 LQAVEVVITHLAPGTK EVTYKMCSIPPKNEKLQAVEVVITHLAPGT QAVEVVITHLAPGTKHETWSGHVISS____ K L Q T K H 2 0 0 0 0 1 1 1 1 1 2 1 0 0 1 0 2 0 0 3 0 0 16 0 1674.9669 Q9Y2V2 Q9Y2V2 121 136 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 3 4.7059E-05 66.826 2 2 1.4759 1.5638 21.542 4 Linear 1.4504 1.5101 5.3489 2 0 Median 1.3092 1.053 8.0014 2 0 Median 75394000 32172000 43221000 64802000 27757000 37044000 10592000 4415100 6176900 8715 2127 8917 23134;23135;23136;23137 36295;36296;36297;36298;36299;36300 36297 6 LQAVTDDHIR TSAFLLWDPTKVPPRLQAVTDDHIRMHKVL KVPPRLQAVTDDHIRMHKVLRESGLKYVAV R L Q I R M 1 1 0 2 0 1 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1166.6044 V9HWI1;P30043 V9HWI1 125 134 HEL-S-10;BLVRB Flavin reductase (NADPH) yes no 3 7.044E-05 92.538 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75553000 0 75553000 75553000 0 75553000 0 0 0 8716 1528 8918 23138 36301 36301 1 LQDAEIAR ELKELIQKELTIGSKLQDAEIARLMEDLDR ELTIGSKLQDAEIARLMEDLDRNKDQEVNF K L Q A R L 2 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 914.48214 R4GN98;P06703 R4GN98 48 55 S100A6 Protein S100;Protein S100-A6 yes no 2 0.0038362 95.531 2 2.0665 2.1175 9.7777 2 Median 2.0665 2.1175 9.7777 2 0 Median NaN NaN NaN 0 0 Median 29859000 9155000 20704000 29859000 9155000 20704000 0 0 0 8717 1449 8919 23139;23140 36302;36303 36302 2 LQDAINILK GKYVGLVRVLAKHGKLQDAINILKEMKEKD LAKHGKLQDAINILKEMKEKDVLIKDTTAL K L Q L K E 1 0 1 1 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1026.6073 E5KNY5;P42704;B4DSR0 E5KNY5 764 772 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 1.4999E-05 122.52 2 1 2.4452 2.7584 62.346 3 Median 2.4815 2.7739 0.79059 2 0 Median 1.1743 0.94217 NaN 1 0 Median 124470000 38576000 85891000 121610000 37284000 84324000 2859200 1292100 1567100 8718 1207 8920 23141;23142;23143 36304;36305;36306;36307 36305 4 LQDASAEVER KVEELEGEITTLNHKLQDASAEVERLRREN TLNHKLQDASAEVERLRRENQVLSVRIADK K L Q E R L 2 1 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1116.5411 A0A024R7H5;B4E0Z6;Q10589 A0A024R7H5 127 136 BST2 Bone marrow stromal antigen 2 yes no 2 4.2954E-16 153.05 2 1 1.8365 1.9771 8.9624 2 Median 1.8365 1.9771 8.9624 2 0 Median NaN NaN NaN 0 0 Median 84802000 30583000 54219000 83579000 30583000 52996000 1223300 0 1223300 8719 225 8921 23144;23145;23146 36308;36309;36310;36311;36312;36313 36310 6 LQDEEASMGASYSK EDEDSFRNCLLSCERLQDEEASMGASYSKS RLQDEEASMGASYSKSLIKLLLGIDILQPA R L Q S K S 2 0 0 1 0 1 2 1 0 0 1 1 1 0 0 3 0 0 1 0 0 0 14 0 1514.6559 A0A024R2G2;Q9BXW9 A0A024R2G2 120 133 FANCD2 Fanconi anemia group D2 protein yes no 2 7.574E-05 75.695 2 1.0463 1.131 46.435 2 Median 1.0463 1.131 46.435 2 0 Median NaN NaN NaN 0 0 Median 7140700 3563600 3577200 7140700 3563600 3577200 0 0 0 8720 111 8922 23147;23148 36314;36315;36316;36317 36314 95 4 LQDEFENR GQKQSTTFRRLLISKLQDEFENRTRNVDVY RRLLISKLQDEFENRTRNVDVYDKRENPLL K L Q N R T 0 1 1 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1049.4778 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77 D3DQV9 171 178 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.00097363 121.62 2 1.9922 2.0074 NaN 1 Median 1.9922 2.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median 26798000 6700400 20098000 26798000 6700400 20098000 0 0 0 8721 1054 8923 23149;23150 36318;36319 36319 2 LQDEIQNMK NFAVEAANYQDTIGRLQDEIQNMKEEMARH QDTIGRLQDEIQNMKEEMARHLREYQDLLN R L Q M K E 0 0 1 1 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 9 0 1117.5438 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5 V9HWE1 365 373 HEL113;VIM Vimentin yes no 2 3.6389E-12 142.08 2 2 3.5357 2.85 1.5786 2 Median NaN NaN NaN 0 0 Median 3.5357 2.85 1.5786 2 0 Median 19467000 3137200 16330000 6571700 0 6571700 12895000 3137200 9757900 8722 1457 8924;8925 23151;23152;23153;23154 36320;36321;36322;36323;36324;36325 36325 1173 6 LQDGVHIIK EKNPDEFYYKMTRVKLQDGVHIIKETKEEV KMTRVKLQDGVHIIKETKEEVTPEQLKLMR K L Q I K E 0 0 0 1 0 1 0 1 1 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1021.592 Q9Y3A2 Q9Y3A2 75 83 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 1.9871E-05 118.33 1 2 0.97343 1.0459 22.563 3 Plateau 0.97343 1.0482 NaN 1 0 Median 0.89515 0.70911 0.43183 2 0 Median 39393000 20253000 19140000 33470000 17233000 16237000 5923100 3020500 2902600 8723 2132 8926 23155;23156;23157 36326;36327;36328 36326 3 LQDLAGGIFPEDEIPEK TPSQNRKRLYKVIRKLQDLAGGIFPEDEIP DLAGGIFPEDEIPEKACRRLLEGRRQKKTK K L Q E K A 1 0 0 2 0 1 3 2 0 2 2 1 0 1 2 0 0 0 0 0 0 0 17 0 1869.936 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 336 352 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 1.1075E-05 101.2 2 2 0.97189 0.91784 2.3616 4 Median 0.83698 0.93881 3.1511 2 0 Median 1.1069 0.91494 0.40537 2 0 Median 295760000 151260000 144500000 219590000 115700000 103890000 76175000 35563000 40612000 8724 1618 8927 23158;23159;23160;23161 36329;36330;36331;36332;36333;36334;36335;36336;36337;36338 36337 10 LQDLELK PKEHHRFVIGKNGEKLQDLELKTATKIQIP VIGKNGEKLQDLELKTATKIQIPRPDDPSN K L Q L K T 0 0 0 1 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 857.48583 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H0Y394;C9J5E5;C9JIZ1;H7C0A4;Q5HYC5 A0A024R4E5 173 179 HDLBP;DKFZp686L08115 Vigilin yes no 2 0.030163 69.176 1 2.2952 2.3256 NaN 1 Median 2.2952 2.3256 NaN 1 0 Median NaN NaN NaN 0 0 Median 29338000 9931100 19407000 29338000 9931100 19407000 0 0 0 8725 154 8928 23162 36339 36339 1 LQDLSSSFLK CKPADFEVPETFLNRLQDLSSSFLKDIAVF TFLNRLQDLSSSFLKDIAVFITDKISSFCL R L Q L K D 0 0 0 1 0 1 0 0 0 0 3 1 0 1 0 3 0 0 0 0 0 0 10 0 1136.6077 Q5HYL4;Q86U38 Q5HYL4 257 266 DKFZp686E1893;NOP9 Nucleolar protein 9 yes no 2 0.0013651 73.985 1 0.58886 0.59608 NaN 1 Median 0.58886 0.59608 NaN 1 0 Median NaN NaN NaN 0 0 Median 10166000 6305800 3859900 10166000 6305800 3859900 0 0 0 8726 1807 8929 23163 36340 36340 1 LQDPKDDECPVVNAYATLIENDSNPEVR KIPNVRIQAVLALSRLQDPKDDECPVVNAY AYATLIENDSNPEVRRAVLSCIAPSAKTLP R L Q V R R 2 1 3 4 1 1 3 0 0 1 2 1 0 0 3 1 1 0 1 3 0 0 28 1 3200.4932 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 169 196 NCAPG Condensin complex subunit 3 yes no 3 5.2541E-19 77.065 2 2 1.4702 1.0549 18.346 4 Linear 0.76743 0.89872 2.3915 2 0 Median 1.4076 1.2331 1.8191 2 0 Median 274330000 120910000 153420000 74525000 40612000 33914000 199810000 80302000 119500000 8727 1995 8930 23164;23165;23166;23167 36341;36342;36343;36344;36345;36346;36347 36345 7 LQDVFEFR KYNPPDHDVVAMARKLQDVFEFRYAKMPDE VVAMARKLQDVFEFRYAKMPDEPLEPGPLP K L Q F R Y 0 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 8 0 1052.5291 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7 A0A024RCR5 442 449 BRD2 Bromodomain-containing protein 2 yes no 2 0.0038412 94.114 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8728 367 8931 23168;23169;23170 36348;36349;36350 36349 3 LQEAGILSAEELQR EHSFDGLRRKVSAQRLQEAGILSAEELQRL RLQEAGILSAEELQRLAQGHTTVDELARRE R L Q Q R L 2 1 0 0 0 2 3 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 14 0 1555.8206 Q15149;D3DWL0 Q15149 2795 2808 PLEC;PLEC1 Plectin yes no 2 3.1186E-09 113.95 2 2.1429 1.7692 10.687 2 Median NaN NaN NaN 0 0 Median 2.1429 1.7692 10.687 2 0 Median 19856000 6096600 13759000 0 0 0 19856000 6096600 13759000 8729 1754 8932 23171;23172 36351;36352;36353;36354 36353 4 LQEALGMHESK CFLPGWQEIKGVQQRLQEALGMHESKYLIL VQQRLQEALGMHESKYLILPVHSNIPMMDQ R L Q S K Y 1 0 0 0 0 1 2 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 11 0 1241.6074 H7BXY3;A0A024R2T6;Q7L2E3;Q6W6M7 H7BXY3 660 670 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2;3 0.00060139 69.01 2 1.5064 1.5053 39.14 2 Median 1.5064 1.5053 39.14 2 0 Median NaN NaN NaN 0 0 Median 29524000 10482000 19042000 29524000 10482000 19042000 0 0 0 8730 122 8933 23173;23174 36355;36356;36357 36355 105 3 LQEDTSAHQNVVAETLSALENK MHQSFVAETSQRISKLQEDTSAHQNVVAET HQNVVAETLSALENKEKELQLLNDKVETEQ K L Q N K E 3 0 2 1 0 2 3 0 1 0 3 1 0 0 0 2 2 0 0 2 0 0 22 0 2396.1819 P49454 P49454 888 909 CENPF Centromere protein F yes yes 3 3.8801E-09 77.681 1 1.1357 1.2204 NaN 1 Median 1.1357 1.2204 NaN 1 0 Median NaN NaN NaN 0 0 Median 37489000 15984000 21505000 37489000 15984000 21505000 0 0 0 8731 1581 8934 23175 36358;36359 36358 2 LQEEIPVLHEEQELLPNVK AQIINTQDLEKSHTKLQEEIPVLHEEQELL IPVLHEEQELLPNVKEVSETQETMNELELL K L Q V K E 0 0 1 0 0 2 5 0 1 1 4 1 0 0 2 0 0 0 0 2 0 0 19 0 2256.2002 A0A087X0P0;Q02224 A0A087X0P0 1278 1296 CENPE Kinesin-like protein;Centromere-associated protein E yes no 3 0.047142 12.848 1 2.0465 1.5871 NaN 1 Median NaN NaN NaN 0 0 Median 2.0465 1.5871 NaN 1 0 Median 3494100 1069000 2425100 0 0 0 3494100 1069000 2425100 8732 445 8935 23176 36360 36360 1 LQEELSENDK RSAEELKEMQDKVIKLQEELSENDKKIKAL DKVIKLQEELSENDKKIKALNHEIEELEKR K L Q D K K 0 0 1 1 0 1 3 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1203.5619 A0A024R158;O95347;B7ZLZ7;A8K984;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q7Z2X1;Q05D74;Q5T821 A0A024R158 263 272 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 4.3406E-79 228.31 2 2 1.2788 1.2476 19.769 4 Median 0.8991 1.0409 6.8258 2 0 Median 1.7877 1.4541 2.866 2 0 Median 549300000 281930000 267370000 494810000 262390000 232420000 54491000 19542000 34948000 8733 69 8936 23177;23178;23179;23180 36361;36362;36363;36364;36365;36366;36367 36364 7 LQEELSENDKK RSAEELKEMQDKVIKLQEELSENDKKIKAL KVIKLQEELSENDKKIKALNHEIEELEKRK K L Q K K I 0 0 1 1 0 1 3 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 11 1 1331.6569 A0A024R158;O95347;B7ZLZ7;A8K984;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q7Z2X1;Q05D74;Q5T821 A0A024R158 263 273 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 1.5437E-40 192.12 3 2 0.94509 1.1157 26.86 5 Median 0.89312 1.0358 9.492 3 0 Median 1.934 1.6433 0.58636 2 0 Median 275240000 142400000 132840000 244670000 132610000 112070000 30565000 9796800 20768000 8734 69 8937 23181;23182;23183;23184;23185 36368;36369;36370;36371;36372;36373;36374 36372 7 LQEEMLQR ERDNLAEDIMRLREKLQEEMLQREEAENTL IMRLREKLQEEMLQREEAENTLQSFRQDVD K L Q Q R E 0 1 0 0 0 2 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 1045.5226 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 189 196 HEL113;VIM Vimentin yes no 2 0.00049985 113.89 3 4 1.4893 1.6985 42.455 5 Median 1.4296 1.6278 7.2249 3 0 Median 3.5846 3.1574 39.212 2 0 Median 305350000 131320000 174030000 293730000 129830000 163900000 11620000 1491200 10129000 8735 1457 8938;8939 23186;23187;23188;23189;23190;23191;23192 36375;36376;36377;36378;36379;36380;36381;36382 36375 1174 8 LQEEMLQREEAENTLQSFR ERDNLAEDIMRLREKLQEEMLQREEAENTL MLQREEAENTLQSFRQDVDNASLARLDLER K L Q F R Q 1 2 1 0 0 3 5 0 0 0 3 0 1 1 0 1 1 0 0 0 0 0 19 1 2350.1223 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 189 207 HEL113;VIM Vimentin yes no 3 2.2114E-06 74.953 2 2 2.6883 2.7123 44.074 4 Median 1.6538 1.8254 4.3906 2 0 Median 4.4248 3.9114 0.15511 2 0 Median 58779000 22461000 36318000 49476000 20581000 28895000 9302800 1879300 7423600 8736 1457 8940;8941 23193;23194;23195;23196 36383;36384;36385;36386;36387 36383 1174 5 LQEIHPECGPCK QYMLNAGLAKVVSLRLQEIHPECGPCKTKK SLRLQEIHPECGPCKTKKGTDVMVRCLKLL R L Q C K T 0 0 0 0 2 1 2 1 1 1 1 1 0 0 2 0 0 0 0 0 0 0 12 0 1466.6646 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 310 321 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.011247 56.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8737 1699 8942 23197 36388 36388 1 LQELEANPPSDVYLSSR EYDELAETQGKLEEKLQELEANPPSDVYLS ELEANPPSDVYLSSRDRQILDWHFANLEFA K L Q S R D 1 1 1 1 0 1 2 0 0 0 3 0 0 0 2 3 0 0 1 1 0 0 17 0 1916.948 A8K2R3;O60341 A8K2R3 386 402 KDM1A Lysine-specific histone demethylase 1A yes no 2 8.9741E-05 73.386 2 0.82822 0.84883 20.767 2 Median 0.82822 0.84883 20.767 2 0 Median NaN NaN NaN 0 0 Median 33789000 16976000 16813000 33789000 16976000 16813000 0 0 0 8738 711 8943 23198;23199 36389;36390;36391 36391 3 LQELEGQIADLK KDANQAKLSERRRKRLQELEGQIADLKKKL RKRLQELEGQIADLKKKLNEQSKLLKLKES R L Q L K K 1 0 0 1 0 2 2 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1355.7296 Q59HG1;O95239;Q6PKB2 Q59HG1 605 616 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 3.4353E-29 165.66 1 0.80228 0.90591 NaN 1 Median 0.80228 0.90591 NaN 1 0 Median NaN NaN NaN 0 0 Median 108320000 56125000 52190000 108320000 56125000 52190000 0 0 0 8739 1803 8944 23200 36392;36393 36393 2 LQELSEQQETK L Q T K 0 0 0 0 0 3 3 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1331.6569 REV__Q9NSI9 yes no 2 0.0057959 55.567 2 0.086826 0.068416 8.1259 2 Median NaN NaN NaN 0 0 Median 0.086826 0.068416 8.1259 2 0 Median 8150000 7535400 614550 0 0 0 8150000 7535400 614550 + 8740 2184 8945 23201;23202 36394;36395 36395 2 LQELTPSSGDPGEHDPASTHK STIDLKNELKQCIGRLQELTPSSGDPGEHD SSGDPGEHDPASTHKSTRPVKKVSKEEKKS R L Q H K S 1 0 0 2 0 1 2 2 2 0 2 1 0 0 3 3 2 0 0 0 0 0 21 0 2202.0189 Q59GW5;D3DTY9 Q59GW5 369 389 TRIM25 yes no 3 0.00019659 35.834 2 2.1392 2.1354 NaN 1 Median 2.1392 2.1354 NaN 1 0 Median NaN NaN NaN 0 0 Median 19337000 4781700 14556000 19337000 4781700 14556000 0 0 0 8741 1802 8946 23203;23204 36396;36397;36398 36397 3 LQENFSLDLLK PNWDYHAEIQAFGHRLQENFSLDLLKTAFV FGHRLQENFSLDLLKTAFVNSCYIKSEEAK R L Q L K T 0 0 1 1 0 1 1 0 0 0 4 1 0 1 0 1 0 0 0 0 0 0 11 0 1318.7133 A0A024R473;Q9H9J2 A0A024R473 79 89 MRPL44 39S ribosomal protein L44, mitochondrial yes no 2 0.0042422 61.353 2 0.54369 0.55911 NaN 1 Median 0.54369 0.55911 NaN 1 0 Median NaN NaN NaN 0 0 Median 37660000 26855000 10805000 37660000 26855000 10805000 0 0 0 8742 149 8947 23205;23206 36399;36400 36399 2 LQENPESCLSIVR LKKMSPQELKEVDSKLQENPESCLSIVREK SKLQENPESCLSIVREKLYKGISWVEVEAK K L Q V R E 0 1 1 0 1 1 2 0 0 1 2 0 0 0 1 2 0 0 0 1 0 0 13 0 1543.7664 B4DZG2;A0A024R8C1;Q15361;A0A087WY09 B4DZG2 701 713 TTF1 Transcription termination factor 1 yes no 2 0.046277 30.059 1 1.9898 1.673 NaN 1 Median NaN NaN NaN 0 0 Median 1.9898 1.673 NaN 1 0 Median 4413400 1621100 2792400 0 0 0 4413400 1621100 2792400 8743 247 8948 23207 36401 36401 1 LQETLSAADR ______________________________ CSLLRLQETLSAADRCGAALAGHQLIRGLG R L Q D R C 2 1 0 1 0 1 1 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1102.5619 P78527;B4DL41 P78527 15 24 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 6.531E-08 112.75 2 1 0.66181 0.76144 56.067 3 Plateau 0.64244 0.71194 9.5073 2 0 Median 0.3314 0.27148 NaN 1 0 Median 135920000 86147000 49775000 119330000 73726000 45608000 16589000 12421000 4167600 8744 1665 8949 23208;23209;23210 36402;36403;36404;36405 36404 4 LQETSSQSYVEEQK YVDEENSDGETSNHRLQETSSQSYVEEQKQ RLQETSSQSYVEEQKQLKESFRAFVEDSED R L Q Q K Q 0 0 0 0 0 3 3 0 0 0 1 1 0 0 0 3 1 0 1 1 0 0 14 0 1654.7686 Q8N9T8;A0A024R7C4;B4DUT2;B4DUY9;H0YFD2;B7ZLF4;F8WFC1 Q8N9T8 145 158 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 3.4207E-09 112.84 3 2 1.4784 1.1573 22.8 3 Median 0.78207 0.82629 NaN 1 0 Median 1.5133 1.2152 6.909 2 0 Median 52613000 19170000 33443000 30280000 10863000 19417000 22332000 8306200 14026000 8745 1916 8950 23211;23212;23213;23214;23215 36406;36407;36408;36409;36410;36411;36412 36412 7 LQEVDSLWK TSVGYAIFKVLNEKKLQEVDSLWKEFETPE VLNEKKLQEVDSLWKEFETPEKANKIVKLK K L Q W K E 0 0 0 1 0 1 1 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 9 0 1116.5815 Q9Y2X3;B4DUY3;F8WED0 Q9Y2X3 22 30 NOP58 Nucleolar protein 58 yes no 2 9.8046E-06 114.89 2 2 1.1188 0.86785 4.8717 3 Median 0.75562 0.85075 NaN 1 0 Median 1.1246 0.89996 5.1374 2 0 Median 223960000 160070000 63899000 198560000 147970000 50585000 25407000 12093000 13314000 8746 2129 8951 23216;23217;23218;23219 36413;36414;36415;36416 36414 4 LQEVIETLLSLEK DQRLPECAKLAKEGRLQEVIETLLSLEKQT GRLQEVIETLLSLEKQTRTASDMVSTSRIL R L Q E K Q 0 0 0 0 0 1 3 0 0 1 4 1 0 0 0 1 1 0 0 1 0 0 13 0 1513.8603 A0A0S2Z489;O00232;A0A0S2Z476 A0A0S2Z489 40 52 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 3.4264E-06 108.37 2 2.1275 2.1731 11.067 2 Median 2.1275 2.1731 11.067 2 0 Median NaN NaN NaN 0 0 Median 26556000 8103300 18453000 26556000 8103300 18453000 0 0 0 8747 558 8952 23220;23221 36417;36418;36419;36420 36419 4 LQEVLQSESDQLK DEMKSVAKEKDDLQRLQEVLQSESDQLKEN QRLQEVLQSESDQLKENIKEIVAKHLETEE R L Q L K E 0 0 0 1 0 3 2 0 0 0 3 1 0 0 0 2 0 0 0 1 0 0 13 0 1515.7781 A0A087X0P0;Q02224 A0A087X0P0 1450 1462 CENPE Kinesin-like protein;Centromere-associated protein E yes no 2 0.0015018 72.652 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 854550 854550 0 0 0 0 854550 854550 0 8748 445 8953 23222;23223 36421;36422 36421 2 LQFIFTNIDPK KDRLGLEIRKIYGEKLQFIFTNIDPKNPES YGEKLQFIFTNIDPKNPESPFMFSLHLNEA K L Q P K N 0 0 1 1 0 1 0 0 0 2 1 1 0 2 1 0 1 0 0 0 0 0 11 0 1334.7234 Q9HBM1 Q9HBM1 154 164 SPC25 Kinetochore protein Spc25 yes yes 2 0.0011084 70.028 2 1 0.91576 0.89615 6.1883 3 Plateau 0.87858 0.89615 5.8954 2 0 Median 1.0086 0.8279 NaN 1 0 Median 27726000 15545000 12181000 22472000 12923000 9549700 5253700 2622200 2631500 8749 2050 8954 23224;23225;23226 36423;36424;36425;36426;36427;36428 36425 6 LQFLFAK MRHQKRNVYHCNKCRLQFLFAKDKIEHKLQ VYHCNKCRLQFLFAKDKIEHKLQHHKTFRK R L Q A K D 1 0 0 0 0 1 0 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 7 0 865.50617 Q7Z3K3;B4DSK8;H0YCT3 Q7Z3K3 654 660 POGZ Pogo transposable element with ZNF domain yes no 2 0.026941 83.287 1 0.6253 0.61865 NaN 1 Median 0.6253 0.61865 NaN 1 0 Median NaN NaN NaN 0 0 Median 8332100 3924500 4407600 8332100 3924500 4407600 0 0 0 8750 1874 8955 23227 36429;36430 36429 2 LQFLTSK MKHQKKGVHRCPKCRLQFLTSKEKAEHKAQ VHRCPKCRLQFLTSKEKAEHKAQHRTFIKP R L Q S K E 0 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 7 0 835.48035 Q8ND82;Q9UJJ2 Q8ND82 477 483 ZNF280C Zinc finger protein 280C yes no 2 0.01285 104.45 2 0.91625 0.93619 3.1448 2 Median 0.91625 0.93619 3.1448 2 0 Median NaN NaN NaN 0 0 Median 44277000 23265000 21013000 44277000 23265000 21013000 0 0 0 8751 1924 8956 23228;23229 36431;36432 36432 2 LQGAASHVPEGFDPTGPAGLGRPTPGLSQGPGK TTGSAAGPPLSEDDKLQGAASHVPEGFDPT GLGRPTPGLSQGPGKETLESALIALDSEKP K L Q G K E 3 1 0 1 0 2 1 8 1 0 3 1 0 1 6 2 2 0 0 1 0 0 33 1 3152.6003 A0A1B0GV09;Q9H9B1;A0A0C4DGF8;A0A1B0GU48 A0A1B0GV09 654 686 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 4 0.00024392 25.376 1 1 0.68318 0.66785 9.8197 2 Median 0.54773 0.62305 NaN 1 0 Median 0.85211 0.71587 NaN 1 0 Median 23514000 12947000 10567000 18773000 10210000 8563200 4740900 2736700 2004200 8752 631 8957 23230;23231 36433;36434;36435;36436 36433 4 LQGDANNLHGFEVDSR TRLSAYVSYGGLLMRLQGDANNLHGFEVDS QGDANNLHGFEVDSRVYLLMKKL_______ R L Q S R V 1 1 2 2 0 1 1 2 1 0 2 0 0 1 0 1 0 0 0 1 0 0 16 0 1770.8285 C9JLU1;P52434 C9JLU1 125 140 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 3 7.2378E-05 58.246 2 1 1.4113 1.5137 24.617 3 Plateau 1.4075 1.5057 3.9618 2 0 Median 1.1789 0.98575 NaN 1 0 Median 79961000 27795000 52166000 76275000 26097000 50178000 3685800 1697700 1988100 8753 1138 8958 23232;23233;23234 36437;36438;36439 36438 3 LQGEIAHVK EIKIEISELNRVIQRLQGEIAHVKKQCKNV NRVIQRLQGEIAHVKKQCKNVQDAIADAEQ R L Q V K K 1 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 993.56073 CON__P35908;P35908 CON__P35908 412 420 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 8.2055E-08 141.52 2 2 0.021367 0.023999 42.347 2 Median 0.021367 0.023999 42.347 2 0 Median NaN NaN NaN 0 0 Median 228870000 225660000 3213900 203740000 200530000 3213900 25126000 25126000 0 + 8754 1166 8959 23235;23236;23237;23238 36440;36441;36442;36443 36441 4 LQGIDLDR ELKDVERKIAQQAAKLQGIDLDRTVQQVNQ IAQQAAKLQGIDLDRTVQQVNQEKQEKQHK K L Q D R T 0 1 0 2 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 928.49779 Q92878 Q92878 816 823 RAD50 DNA repair protein RAD50 yes yes 2 0.011064 75.854 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6013400 0 6013400 6013400 0 6013400 0 0 0 8755 1953 8960 23239 36444 36444 1 LQGLSASDVTEQIIK QRMNEQPRQLFWEKRLQGLSASDVTEQIIK LQGLSASDVTEQIIKTMELPKGLQGVGPGS R L Q I K T 1 0 0 1 0 2 1 1 0 2 2 1 0 0 0 2 1 0 0 1 0 0 15 0 1600.8672 Q9UBB5;O60535 Q9UBB5 287 301 MBD2;NY-CO-41 Methyl-CpG-binding domain protein 2 yes no 2 5.1675E-07 99.5 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37908000 0 37908000 30510000 0 30510000 7398100 0 7398100 8756 2096 8961 23240;23241;23242 36445;36446;36447 36445 3 LQGQITEGSNMIK RRAQARASEDLEKLRLQGQITEGSNMIKTI LRLQGQITEGSNMIKTIAFGRYELDTWYHS R L Q I K T 0 0 1 0 0 2 1 2 0 2 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1417.7235 O95251;E7EUP3;B7Z4D9;B3KVJ2;B4DG18 O95251 326 338 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 7.2429E-05 84.31 2 1.0304 1.036 NaN 1 Median 1.0304 1.036 NaN 1 0 Median NaN NaN NaN 0 0 Median 37881000 23982000 13899000 37881000 23982000 13899000 0 0 0 8757 1422 8962 23243;23244 36448;36449;36450 36449 1119 3 LQGQLEQGDDTAAER RADTKRLKLLEEERRLQGQLEQGDDTAAER LQGQLEQGDDTAAERLEKVYEELRATGAAA R L Q E R L 2 1 0 2 0 3 2 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 15 0 1629.7594 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 397 411 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.4095E-70 204.32 1 2 0.76363 0.83635 27.314 3 Plateau 0.76363 0.83635 NaN 1 0 Median 0.61723 0.5225 4.101 2 0 Median 44950000 22451000 22499000 31959000 14607000 17352000 12991000 7843900 5147300 8758 1926 8963 23245;23246;23247 36451;36452;36453;36454;36455 36452 5 LQGQLEQGDDTAAERLEK RADTKRLKLLEEERRLQGQLEQGDDTAAER QLEQGDDTAAERLEKVYEELRATGAAAAEA R L Q E K V 2 1 0 2 0 3 3 2 0 0 3 1 0 0 0 0 1 0 0 0 0 0 18 1 1999.9811 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 397 414 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 0.056362 16.312 1 0.72617 0.62844 NaN 1 Median NaN NaN NaN 0 0 Median 0.72617 0.62844 NaN 1 0 Median 2584500 1379500 1205000 0 0 0 2584500 1379500 1205000 8759 1926 8964 23248 36456 36456 1 LQGSDLFWR KETTRFFFFSKNDERLQGSDLFWRGVGSNM SKNDERLQGSDLFWRGVGSNMSRNSWEART R L Q W R G 0 1 0 1 0 1 0 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 9 0 1120.5665 A0A024R250;Q76FK4;A6H8Z4 A0A024R250 1129 1137 NOL8 Nucleolar protein 8 yes no 2 0.0038685 69.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8760 104 8965 23249 36457 36457 1 LQIASDENYK FQRDAEELEKWIQEKLQIASDENYKDPTNL WIQEKLQIASDENYKDPTNLQGKLQKHQAF K L Q Y K D 1 0 1 1 0 1 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1179.5772 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8;A0A0D9SFF6 A0A0D9SF54 64 73 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 2.3193E-22 157.91 3 1.6802 1.7451 NaN 1 Median 1.6802 1.7451 NaN 1 0 Median NaN NaN NaN 0 0 Median 19396000 4361600 15034000 19396000 4361600 15034000 0 0 0 8761 523 8966 23250;23251;23252 36458;36459;36460;36461 36460 4 LQIDEQLR HLSYLQEVEQLRLERLQIDEQLRQIGLGFR EQLRLERLQIDEQLRQIGLGFRPPGSGRGS R L Q L R Q 0 1 0 1 0 2 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1013.5506 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;B4DFH8;B4DZ17;P51116;A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 P51116 379 386 FMR1;FXR2;FXR1 Fragile X mental retardation protein 1;Fragile X mental retardation syndrome-related protein 2;Fragile X mental retardation syndrome-related protein 1 no no 2 0.0019394 104.37 2 1 1.1815 1.1603 18.598 2 Median 1.144 1.3234 NaN 1 0 Median 1.2203 1.0173 NaN 1 0 Median 270810000 78516000 192300000 254930000 71189000 183740000 15883000 7327600 8555500 8762 1593;1689;531 8967 23253;23254;23255 36462;36463;36464;36465 36463 4 LQIDVDGR PCIMVVNHDASSIPRLQIDVDGRKEILFYD DASSIPRLQIDVDGRKEILFYDRILCDVPC R L Q G R K 0 1 0 2 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 914.48214 Q08J23 Q08J23 249 256 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.0099928 73.26 1 1.3156 1.477 NaN 1 Median 1.3156 1.477 NaN 1 0 Median NaN NaN NaN 0 0 Median 93065000 39323000 53742000 93065000 39323000 53742000 0 0 0 8763 1694 8968 23256 36466;36467 36467 2 LQIELGK DARRALDDTARERAKLQIELGKCKAEHDQL DTARERAKLQIELGKCKAEHDQLLLNYAKK K L Q G K C 0 0 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 103 109 LMNB1 Lamin-B1 yes no 2 0.01535 99.139 1 1.2232 1.3588 NaN 1 Median 1.2232 1.3588 NaN 1 0 Median NaN NaN NaN 0 0 Median 49855000 23464000 26392000 49855000 23464000 26392000 0 0 0 8764 1502 8969 23257 36468 36468 1 LQILTALCHR KLETSEFFELTSEEKLQILTALCHRILMTY TSEEKLQILTALCHRILMTYSVQDHMETRQ K L Q H R I 1 1 0 0 1 1 0 0 1 1 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1223.6809 Q9UIG0 Q9UIG0 746 755 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.0091219 51.927 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25112000 0 25112000 15834000 0 15834000 9278400 0 9278400 8765 2103 8970 23258;23259 36469;36470 36469 2 LQIPEEER VCEGLRTQIRELWDRLQIPEEEREAVATIM IRELWDRLQIPEEEREAVATIMSGSKAKVR R L Q E R E 0 1 0 0 0 1 3 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 8 0 1012.5189 A0A024RC67;O43663 A0A024RC67 250 257 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.0012974 110.31 2 0.8637 0.97756 3.9804 2 Median 0.8637 0.97756 3.9804 2 0 Median NaN NaN NaN 0 0 Median 114640000 64143000 50497000 114640000 64143000 50497000 0 0 0 8766 353 8971 23260;23261 36471;36472 36472 2 LQIQCVVEDDK WGASKLVPVGYGIRKLQIQCVVEDDKVGTD GIRKLQIQCVVEDDKVGTDLLEEEITKFEE K L Q D K V 0 0 0 2 1 2 1 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1345.6548 D3DWK1;B2RAR6;E9PRY8;P29692;E9PK01;Q9BW34;E9PQZ1;H0YE72;H0YE58;A4D1M6;A0A024R3W7;P24534 D3DWK1 609 619 EEF1D;LOC392793;EEF1B2 Elongation factor 1-delta;Elongation factor 1-beta no no 2 4.3423E-17 159.4 2 1 1.8316 2.0566 50.208 3 Median 2.0438 2.2351 11.769 2 0 Median 1.2136 0.9481 NaN 1 0 Median 91145000 30106000 61039000 87466000 28290000 59176000 3679000 1816300 1862700 8767 875;142 8972 23262;23263;23264 36473;36474;36475 36473 3 LQISHEAAACITGLR VQSDGQIVLVDDWIKLQISHEAAACITGLR LQISHEAAACITGLRAAMEALVVEVTKQPA K L Q L R A 3 1 0 0 1 1 1 1 1 2 2 0 0 0 0 1 1 0 0 0 0 0 15 0 1638.8512 Q08211;B3KU66 Q08211 1090 1104 DHX9 ATP-dependent RNA helicase A yes no 3 4.9454E-06 88.427 1 1.1823 1.3259 NaN 1 Median 1.1823 1.3259 NaN 1 0 Median NaN NaN NaN 0 0 Median 45408000 21126000 24281000 45408000 21126000 24281000 0 0 0 8768 1691 8973 23265 36476;36477 36476 2 LQISTNLQR IQHLKSTTNELKSEKLQISTNLQRRQQLEE ELKSEKLQISTNLQRRQQLEEQTVELSTEV K L Q Q R R 0 1 1 0 0 2 0 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1071.6037 Q92878 Q92878 875 883 RAD50 DNA repair protein RAD50 yes yes 2 0.0043738 69.423 1 1.1219 1.1307 NaN 1 Median 1.1219 1.1307 NaN 1 0 Median NaN NaN NaN 0 0 Median 19531000 8928100 10603000 19531000 8928100 10603000 0 0 0 8769 1953 8974 23266 36478 36478 1 LQLDLSSINISAK ALRRRYPQIYTTSEKLQLDLSSINISAKDF EKLQLDLSSINISAKDFEVAMQKMIPASQR K L Q A K D 1 0 1 1 0 1 0 0 0 2 3 1 0 0 0 3 0 0 0 0 0 0 13 0 1400.7875 A0A024R9G7;Q6PL18 A0A024R9G7 665 677 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 0.011912 40.015 1 1.0976 1.0784 NaN 1 Median 1.0976 1.0784 NaN 1 0 Median NaN NaN NaN 0 0 Median 23333000 12045000 11287000 23333000 12045000 11287000 0 0 0 8770 278 8975 23267 36479 36479 1 LQLEACETR ESRCQRCISELKDIRLQLEACETRTVHRLR ELKDIRLQLEACETRTVHRLRLPLDKEPAR R L Q T R T 1 1 0 0 1 1 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1118.539 Q15149 Q15149 1131 1139 PLEC Plectin yes yes 2 0.00060281 96.948 1 1.3949 1.4331 NaN 1 Median 1.3949 1.4331 NaN 1 0 Median NaN NaN NaN 0 0 Median 19464000 9048300 10416000 19464000 9048300 10416000 0 0 0 8771 1754 8976 23268 36480 36480 1 LQLEAIHK RMQEGEGHSQLCLDRLQLEAIHKVRFSPNL SQLCLDRLQLEAIHKVRFSPNLDSYGWLVS R L Q H K V 1 0 0 0 0 1 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 950.55492 Q8WUA4;Q53SY8;H0Y4Q6;H7C318;H7C1A9 Q8WUA4 832 839 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.0084146 78.728 2 1 0.97506 1.0792 14.915 3 Median 0.91251 0.9517 17.784 2 0 Median 1.3075 1.0935 NaN 1 0 Median 71204000 41484000 29720000 68988000 40506000 28482000 2215300 977350 1237900 8772 1938 8977 23269;23270;23271 36481;36482;36483;36484 36483 4 LQLEETDHQK LRQKAQVEQELTTLRLQLEETDHQKNLLDE LTTLRLQLEETDHQKNLLDEELQRLKAEAT R L Q Q K N 0 0 0 1 0 2 2 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1239.6095 Q15149 Q15149 2330 2339 PLEC Plectin yes yes 2;3 1.7258E-12 148.52 3 1 0.92976 0.98773 17.409 3 Median 0.92976 0.98773 17.409 3 0 Median NaN NaN NaN 0 0 Median 84700000 40761000 43939000 83810000 40761000 43049000 889620 0 889620 8773 1754 8978 23272;23273;23274;23275 36485;36486;36487;36488;36489 36485 5 LQLEETMPSPYGR GKAIKGKVGKPKVKKLQLEETMPSPYGRRI KKLQLEETMPSPYGRRIIPEITAMKADASK K L Q G R R 0 1 0 0 0 1 2 1 0 0 2 0 1 0 2 1 1 0 1 0 0 0 13 0 1519.7341 Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1200 1212 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.028087 53.569 1 0.90756 0.90215 NaN 1 Median 0.90756 0.90215 NaN 1 0 Median NaN NaN NaN 0 0 Median 16239000 9522900 6716100 16239000 9522900 6716100 0 0 0 8774 1679 8979 23276 36490 36490 1486 0 LQLELSK DARKTLDSVAKERARLQLELSKVREEFKEL SVAKERARLQLELSKVREEFKELKARNTKK R L Q S K V 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 829.49092 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519 P02545 102 108 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.024963 89.55 1 2 1.2398 1.4564 NaN 1 Median 1.2398 1.4564 NaN 1 0 Median NaN NaN NaN 0 0 Median 316870000 146180000 170700000 308940000 146180000 162770000 7931100 0 7931100 8775 1440 8980 23277;23278;23279 36491;36492;36493 36491 3 LQLETEIEALK IHGLRKVIDDTNITRLQLETEIEALKEELL NITRLQLETEIEALKEELLFMKKNHEEEVK R L Q L K E 1 0 0 0 0 1 3 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 11 0 1285.7129 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 197 207 KRT18 Keratin, type I cytoskeletal 18 no no 2 2.3743E-10 134.25 2 2 1.4034 1.4085 9.7698 4 Median 1.1108 1.3167 1.7598 2 0 Median 1.8217 1.5448 5.2872 2 0 Median 1507100000 721380000 785720000 1388500000 675460000 713050000 118580000 45914000 72668000 + 8776 316;1155 8981 23280;23281;23282;23283 36494;36495;36496;36497;36498;36499;36500;36501;36502;36503;36504 36499 11 LQLLEDDK LGLVDIVKGTNSYYKLQLLEDDKENRYWIF GTNSYYKLQLLEDDKENRYWIFRSWGRVGT K L Q D K E 0 0 0 2 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 972.51278 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 572 579 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.0015831 107.66 2 2 0.84978 0.82962 14.301 4 Median 0.62693 0.73157 1.0845 2 0 Median 1.1518 0.93693 0.50206 2 0 Median 584070000 335390000 248680000 527580000 309750000 217830000 56491000 25640000 30850000 8777 139 8982 23284;23285;23286;23287 36505;36506;36507;36508;36509;36510;36511 36507 7 LQLLSLVTK DGDLIAVSNLNDSDKLQLLSLVTKKKRFWC LNDSDKLQLLSLVTKKKRFWCWQRPKYQFL K L Q T K K 0 0 0 0 0 1 0 0 0 0 4 1 0 0 0 1 1 0 0 1 0 0 9 0 1013.6485 A8K410;A4FTY0;A0A024RA58;O60443 A8K410 31 39 DFNA5 Non-syndromic hearing impairment protein 5 yes no 2 0.0029978 77.732 3 1.2999 1.3046 NaN 1 Median 1.2999 1.3046 NaN 1 0 Median NaN NaN NaN 0 0 Median 7180600 2523000 4657600 7180600 2523000 4657600 0 0 0 8778 297 8983 23288;23289;23290 36512;36513;36514;36515 36515 4 LQLMNTFEMHIK L Q I K 0 0 1 0 0 1 1 0 1 1 2 1 2 1 0 0 1 0 0 0 0 0 12 0 1503.7578 REV__Q8IWU5 yes yes 2 0.0027911 50.123 2 0.72582 0.75037 1.498 2 Median 0.72582 0.75037 1.498 2 0 Median NaN NaN NaN 0 0 Median 36879000 20910000 15969000 36879000 20910000 15969000 0 0 0 + 8779 2181 8984 23291;23292 36516;36517 36517 2014;2015 2 LQLNGLTEALR L Q L R 1 1 1 0 0 1 1 1 0 0 4 0 0 0 0 0 1 0 0 0 0 0 11 0 1226.6983 REV__Q9C0G6 yes yes 2 0.0040724 58.676 2 0.94536 0.97637 4.1425 2 Median 0.94536 0.97637 4.1425 2 0 Median NaN NaN NaN 0 0 Median 57202000 29742000 27460000 57202000 29742000 27460000 0 0 0 + 8780 2185 8985 23293;23294 36518;36519;36520;36521 36518 4 LQLNGNLQLELAQVLAQERPK PSQQELPRLLSAACRLQLNGNLQLELAQVL LQLELAQVLAQERPKLPEDPLLSGLLDSPA R L Q P K L 2 1 2 0 0 4 2 1 0 0 6 1 0 0 1 0 0 0 0 1 0 0 21 1 2374.3332 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1188 1208 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 7.8043E-16 106.03 2 1.1924 1.3147 3.9514 2 Median 1.1924 1.3147 3.9514 2 0 Median NaN NaN NaN 0 0 Median 31724000 13987000 17737000 31724000 13987000 17737000 0 0 0 8781 587 8986 23295;23296 36522;36523;36524 36524 3 LQLQGLDLSSR KKQTEQLSLELEVARLQLQGLDLSSRSLLG EVARLQLQGLDLSSRSLLGIDTEDAIQGRN R L Q S R S 0 1 0 1 0 2 0 1 0 0 4 0 0 0 0 2 0 0 0 0 0 0 11 0 1228.6776 P49454 P49454 1739 1749 CENPF Centromere protein F yes yes 2 0.025756 51.436 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3259800 0 3259800 0 0 0 3259800 0 3259800 8782 1581 8987 23297;23298 36525;36526 36526 2 LQLQNPPAIHGSGSGSCQ SMQQLDPSPARKLLKLQLQNPPAIHGSGSG QNPPAIHGSGSGSCQ_______________ K L Q C Q - 1 0 1 0 1 3 0 3 1 1 2 0 0 0 2 3 0 0 0 0 0 0 18 0 1849.8741 Q4G1A1;A8K3X3;Q9H410;Q5JW54 Q4G1A1 323 340 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 1.375E-12 96.745 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15924000 0 0 15924000 0 0 0 0 0 8783 727 8988 23299;23300 36527;36528;36529;36530;36531 36531 5 LQLSLADFR GSATNYITRNKARKKLQLSLADFRRLCILK NKARKKLQLSLADFRRLCILKGIYPHEPKH K L Q F R R 1 1 0 1 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 9 0 1061.5869 B5MCF9;B2RDF2;O00541 B5MCF9 27 35 PES1 Pescadillo homolog yes no 2 1.3597E-05 123.72 2 2 0.97567 1.0456 7.6118 4 Linear 0.88746 1.0137 2.6695 2 0 Median 1.0984 0.92859 9.4752 2 0 Median 314970000 164080000 150890000 272610000 143160000 129450000 42365000 20923000 21443000 8784 886 8989 23301;23302;23303;23304 36532;36533;36534;36535;36536;36537;36538;36539 36539 8 LQLTAQSQVQMK KELLVATKINSSAIKLQLTAQSQVQMKKQK AIKLQLTAQSQVQMKKQKVSTPSDYTLSFL K L Q M K K 1 0 0 0 0 4 0 0 0 0 2 1 1 0 0 1 1 0 0 1 0 0 12 0 1373.7337 A0A024R570;A0A024R5E3;E7EN32;A0A024R5D2;O00255;Q9UE24 A0A024R570 542 553 MEN1 Menin yes no 2 0.012087 47.844 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8785 171 8990 23305 36540 36540 146 1 LQLWDTAGQER DFLSKTMYLEDRTIRLQLWDTAGQERFRSL RTIRLQLWDTAGQERFRSLIPSYIRDSAAA R L Q E R F 1 1 0 1 0 2 1 1 0 0 2 0 0 0 0 0 1 1 0 0 0 0 11 0 1315.6521 Q6FGX3;Q53ET8;A0A024R5J5;A0A024R5H8;P20340;B7Z5Z9;Q6AZ91;Q9NRW1;C9JB90;C9JU14;J3KR73;Q14964 Q6FGX3 64 74 RAB6A;RAB6B;RAB39A Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-39A yes no 2 3.7938E-10 132.01 2 2 1.3075 1.2239 34.345 4 Median 1.4841 1.6545 7.1287 2 0 Median 1.1124 0.91859 5.0896 2 0 Median 124170000 49730000 74440000 104490000 41299000 63191000 19679000 8430800 11248000 8786 182 8991 23306;23307;23308;23309 36541;36542;36543;36544;36545;36546;36547;36548 36542 8 LQMEAPHIIVGTPGR HACIGGTNVRAEVQKLQMEAPHIIVGTPGR LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI K L Q G R V 1 1 0 0 0 1 1 2 1 2 1 0 1 0 2 0 1 0 0 1 0 0 15 0 1617.8661 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;J3QR64;J3KSZ0;J3QLN6;J3QKZ9;B4E047;J3KS25 A8K7F6 147 161 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2;3 3.2089E-07 99.569 8 2 2.6695 3.0578 49.068 4 Linear 2.6075 2.9616 2.5581 2 0 Median 1.4997 1.2681 4.6344 2 0 Median 251250000 46429000 204820000 237110000 41000000 196110000 14147000 5429500 8717800 8787 770 8992;8993 23310;23311;23312;23313;23314;23315;23316;23317;23318;23319 36549;36550;36551;36552;36553;36554;36555;36556;36557;36558;36559;36560;36561 36551 599 13 LQNALNEQR DLALEKAARAELEMRLQNALNEQRVEFATL AELEMRLQNALNEQRVEFATLQEALAHALT R L Q Q R V 1 1 2 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1084.5625 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 1034 1042 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 4.1289E-06 133.58 2 2 1.0449 0.99925 18.243 4 Median 0.81437 0.85673 9.2415 2 0 Median 1.3677 1.1489 7.2136 2 0 Median 64927000 35159000 29769000 50729000 28802000 21927000 14198000 6356300 7841500 8788 186;1747 8994 23320;23321;23322;23323 36562;36563;36564;36565;36566;36567;36568;36569 36562 8 LQNCGVPEGHPVR VVAKEVKKAPVILEKLQNCGVPEGHPVRLE EKLQNCGVPEGHPVRLECRVIGMPPPVFYW K L Q V R L 0 1 1 0 1 1 1 2 1 0 1 0 0 0 2 0 0 0 0 2 0 0 13 0 1461.7147 A0A087WX60;Q86TC9 A0A087WX60 884 896 MYPN Myopalladin yes no 2 0.011007 53.567 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8789 429 8995 23324 36570 36570 1 LQNELDNVSTLLEEAEK EGDRLRVELAEKASKLQNELDNVSTLLEEA NELDNVSTLLEEAEKKGIKFAKDAASLESQ K L Q E K K 1 0 2 1 0 1 4 0 0 0 4 1 0 0 0 1 1 0 0 1 0 0 17 0 1943.9688 P35580 P35580 1285 1301 MYH10 Myosin-10 yes yes 2 0.0038294 35.737 1 1.5323 1.5453 NaN 1 Median 1.5323 1.5453 NaN 1 0 Median NaN NaN NaN 0 0 Median 7760100 2235700 5524400 7760100 2235700 5524400 0 0 0 8790 1544 8996 23325 36571 36571 1 LQNIIDNQK RVELECETIKQENTRLQNIIDNQKYSVADI KQENTRLQNIIDNQKYSVADIERINHERNE R L Q Q K Y 0 0 2 1 0 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1084.5877 A8K031;O14777;Q05DQ6 A8K031 352 360 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.0011557 87.696 1 1 1.0993 0.85386 NaN 1 Median NaN NaN NaN 0 0 Median 1.0993 0.85386 NaN 1 0 Median 17054000 15296000 1757800 13620000 13620000 0 3434300 1676500 1757800 8791 696 8997 23326;23327 36572;36573;36574 36572 3 LQNSASATALVSR TTPRGVLHTFSPSPKLQNSASATALVSRTG PKLQNSASATALVSRTGRHSERTVSAGKGS K L Q S R T 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 3 1 0 0 1 0 0 13 0 1316.7048 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 551 563 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.00013338 89.805 2 2 1.1489 1.1242 40.834 4 Median 0.68847 0.78125 7.8524 2 0 Median 1.893 1.5759 4.1481 2 0 Median 141060000 74691000 66370000 122800000 68404000 54395000 18262000 6287300 11974000 8792 229 8998 23328;23329;23330;23331 36575;36576;36577;36578;36579;36580 36576 5 LQNVQIALDYLR GDSLPREKGRMRFHKLQNVQIALDYLRHRQ FHKLQNVQIALDYLRHRQVKLVNIRNDDIA K L Q L R H 1 1 1 1 0 2 0 0 0 1 3 0 0 0 0 0 0 0 1 1 0 0 12 0 1444.8038 Q15149;E9PMV1;E9PKG0;E9PQ28;E9PIA2 Q15149 237 248 PLEC Plectin yes no 2 7.7261E-23 157.95 2 2 2.1696 2.0237 39.255 4 Median 1.3264 1.4385 3.4375 2 0 Median 3.3523 2.8351 2.8457 2 0 Median 102730000 45020000 57709000 88824000 41310000 47514000 13905000 3710000 10195000 8793 1754 8999 23332;23333;23334;23335 36581;36582;36583;36584;36585;36586;36587 36584 7 LQPFATEADVEEALR LEAIVRIAEALSKMKLQPFATEADVEEALR LQPFATEADVEEALRLFQVSTLDAALSGTL K L Q L R L 3 1 0 1 0 1 3 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 15 0 1687.8417 B1AHB1;Q53FG5;B1AHB0;A8K521;P33992;Q59F49 B1AHB1 585 599 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 2 0.00021995 74.46 2 1 1.3813 1.5112 NaN 1 Median 1.3813 1.5112 NaN 1 0 Median NaN NaN NaN 0 0 Median 47907000 14357000 33550000 47907000 14357000 33550000 0 0 0 8794 745 9000 23336;23337;23338 36588;36589;36590;36591;36592 36590 5 LQPFPAHASR LPMGEASRPEESRMRLQPFPAHASRLEKQN ESRMRLQPFPAHASRLEKQNSTPESDYDNT R L Q S R L 2 1 0 0 0 1 0 0 1 0 1 0 0 1 2 1 0 0 0 0 0 0 10 0 1122.5934 Q68DM7;B4E027;R4GNG3;F8WAK2 Q68DM7 123 132 DKFZp686G01261;GIT2 yes no 2 0.00516 69.825 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95679000 0 95679000 95679000 0 95679000 0 0 0 8795 1059 9001 23339;23340 36593;36594 36593 2 LQPHPQLSPEIR DLATDQKEALLELLRLQPHPQLSPEIRREL LLRLQPHPQLSPEIRRELQSAVPRDVEDVP R L Q I R R 0 1 0 0 0 2 1 0 1 1 2 0 0 0 3 1 0 0 0 0 0 0 12 0 1413.7728 Q13895 Q13895 407 418 BYSL Bystin yes yes 2;3 0.00010959 59.227 2 1 1.1423 1.2527 11.934 3 Plateau 1.137 1.1937 6.8253 2 0 Median 1.1174 0.98804 NaN 1 0 Median 68527000 35893000 32634000 64575000 34376000 30199000 3951800 1517000 2434800 8796 1724 9002 23341;23342;23343 36595;36596;36597;36598 36596 4 LQPLSPVPSDIEISR LREQQHRRWRLHCLKLQPLSPVPSDIEISR LQPLSPVPSDIEISRGQTPKAVDVLAKEIG K L Q S R G 0 1 0 1 0 1 1 0 0 2 2 0 0 0 3 3 0 0 0 1 0 0 15 0 1649.8988 A0A087WVM4;B7ZM99;Q6UB35;B2RD24;H0Y327 A0A087WVM4 288 302 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.0031781 43.382 2 1 1.2502 1.2973 14.91 3 Plateau 1.2684 1.2973 13.251 2 0 Median 1.2502 1.0612 NaN 1 0 Median 26845000 10031000 16814000 23750000 8395000 15355000 3095500 1635900 1459600 8797 418 9003 23344;23345;23346 36599;36600;36601;36602;36603 36601 5 LQPPFSPHPTLLSSTPKPPGTSEPR HRARAVSPAPQSSSRLQPPFSPHPTLLSST LLSSTPKPPGTSEPRSCSSISTALPQVNED R L Q P R S 0 1 0 0 0 1 1 1 1 0 3 1 0 1 8 4 3 0 0 0 0 0 25 1 2667.4021 A0A024R8V6;Q9P275;A0A075B784 A0A024R8V6 751 775 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 4 0.00092008 24.637 2 1.1547 0.97638 22.381 2 Median NaN NaN NaN 0 0 Median 1.1547 0.97638 22.381 2 0 Median 16920000 8047000 8873300 0 0 0 16920000 8047000 8873300 8798 260 9004 23347;23348 36604;36605 36604 2 LQQELDDLLVDLDHQR EKVAAYDKLEKTKTRLQQELDDLLVDLDHQ QQELDDLLVDLDHQRQSACNLEKKQKKFDQ R L Q Q R Q 0 1 0 4 0 3 1 0 1 0 5 0 0 0 0 0 0 0 0 1 0 0 16 0 1948.9854 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1418 1433 MYH9 Myosin-9 yes no 2;3 4.4657E-34 136.01 3 3 2.1223 2.0088 7.8022 6 Median 1.7014 1.9552 6.468 3 0 Median 2.4546 2.1178 9.4896 3 0 Median 534060000 188450000 345600000 386180000 145270000 240910000 147870000 43185000 104690000 8799 81 9005 23349;23350;23351;23352;23353;23354 36606;36607;36608;36609;36610;36611;36612;36613;36614;36615;36616;36617 36614 12 LQQEQDLRR QANQEISPLDSMIQRLQQEQDLRRSGEAVI DSMIQRLQQEQDLRRSGEAVISNTSRLSRG R L Q R R S 0 2 0 1 0 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1184.6262 Q8WWQ0 Q8WWQ0 650 658 PHIP PH-interacting protein yes yes 2;3 5.9709E-05 107.57 4 3 0.80896 0.92494 30.498 7 Median 0.77029 0.84246 13.385 4 0 Median 1.6552 1.3946 7.2816 3 0 Median 155030000 83224000 71802000 121800000 70401000 51399000 33226000 12823000 20403000 8800 1942 9006 23355;23356;23357;23358;23359;23360;23361 36618;36619;36620;36621;36622;36623;36624;36625;36626;36627 36618 10 LQQGAGLESPQGQPEPGAASPQR GSPERPPKTSPGSPRLQQGAGLESPQGQPE SPQGQPEPGAASPQRQQDLHLESPQRQPEY R L Q Q R Q 3 1 0 0 0 5 2 4 0 0 2 0 0 0 4 2 0 0 0 0 0 0 23 0 2302.1302 Q9H6F5;Q6ZW18 Q9H6F5 72 94 CCDC86 Coiled-coil domain-containing protein 86 yes no 2 2.7633E-09 112.67 3 0.42588 0.44229 NaN 1 Median 0.42588 0.44229 NaN 1 0 Median NaN NaN NaN 0 0 Median 36930000 29757000 7172700 36930000 29757000 7172700 0 0 0 8801 2037 9007 23362;23363;23364 36628;36629;36630;36631;36632 36629 5 LQQLFNHTMFILEQEEYQR LNSFEQLCINYTNEKLQQLFNHTMFILEQE FNHTMFILEQEEYQREGIEWNFIDFGLDLQ K L Q Q R E 0 1 1 0 0 4 3 0 1 1 3 0 1 2 0 0 1 0 1 0 0 0 19 0 2466.2002 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;P35580 A0A024R1N1 476 494 MYH9;MYH11;MYH10 Myosin-9;Myosin-11;Myosin-10 no no 3 2.5817E-23 120.11 2 2 2.6453 2.2434 35.312 3 Median 2.9153 3.348 NaN 1 0 Median 2.2719 1.9274 21.47 2 0 Median 151350000 33730000 117620000 137000000 28904000 108100000 14344000 4825500 9518800 8802 81;1544 9008;9009 23365;23366;23367;23368 36633;36634;36635;36636;36637 36633 64 5 LQQLGEAHQAETEVLRR ELEEERAGRKGLEARLQQLGEAHQAETEVL QLGEAHQAETEVLRRELAEAMAAQHTAESE R L Q R R E 2 2 0 0 0 3 3 1 1 0 3 0 0 0 0 0 1 0 0 1 0 0 17 1 1977.0392 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;F5H4J1;A8K394;Q4LE64;Q14980 Q4LE64 771 787 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 4 0.05631 9.254 1 1.3561 1.168 NaN 1 Median NaN NaN NaN 0 0 Median 1.3561 1.168 NaN 1 0 Median 5260000 2344500 2915500 0 0 0 5260000 2344500 2915500 8803 186;1747;718 9010 23369 36638 36638 1 LQQLPADFGR CGLTHLVKLDLSKNKLQQLPADFGRLVNLQ LSKNKLQQLPADFGRLVNLQHLDLLNNKLV K L Q G R L 1 1 0 1 0 2 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1143.6037 Q96AG4 Q96AG4 74 83 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 4.1017E-38 172.23 3 2 0.90367 0.63792 29.104 3 Plateau 0.9037 1.0373 NaN 1 0 Median 0.73158 0.62714 2.4103 2 0 Median 355790000 242160000 113630000 300690000 209230000 91461000 55104000 32934000 22170000 8804 1958 9011 23370;23371;23372;23373;23374 36639;36640;36641;36642;36643;36644;36645;36646 36640 8 LQQNISWK LPSVRRKALDLLNNKLQQNISWKKTIVTRF LDLLNNKLQQNISWKKTIVTRFLKLVPDLL K L Q W K K 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 0 8 0 1015.5451 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1627 1634 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00090957 125.81 2 1 0.84121 0.9238 6.4266 3 Median 0.82574 0.91562 1.2578 2 0 Median 1.2766 1.0223 NaN 1 0 Median 116370000 61028000 55339000 107830000 57480000 50350000 8537200 3548300 4989000 8805 897 9012 23375;23376;23377 36647;36648;36649;36650;36651;36652 36648 6 LQQQAALSPTTAPAVSSVSK AFVKALQQEQEIEQRLQQQAALSPTTAPAV ALSPTTAPAVSSVSKQETIMRHHTLRQAPQ R L Q S K Q 4 0 0 0 0 3 0 0 0 0 2 1 0 0 2 4 2 0 0 2 0 0 20 0 1983.0637 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR30 A0A0U1RRM1 463 482 GATAD2B Transcriptional repressor p66-beta yes no 2 3.7165E-09 95.264 2 0.76219 0.77857 21.897 2 Median 0.76219 0.77857 21.897 2 0 Median NaN NaN NaN 0 0 Median 27375000 15423000 11952000 27375000 15423000 11952000 0 0 0 8806 591 9013 23378;23379 36653;36654;36655;36656;36657 36657 5 LQQQLTQAQETLK QGHLKRASNESTRQRLQQQLTQAQETLKSL QRLQQQLTQAQETLKSLGALKK________ R L Q L K S 1 0 0 0 0 5 1 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 13 0 1527.8257 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;B4DY59 E9PF19 392 404 TBL2 Transducin beta-like protein 2 yes no 2 6.1381E-20 150.04 2 2 0.84753 0.95505 17.884 4 Linear 0.86485 0.91217 8.2626 2 0 Median 0.83653 0.67715 1.9002 2 0 Median 78776000 40727000 38049000 60136000 30528000 29608000 18640000 10199000 8440500 8807 582 9014 23380;23381;23382;23383 36658;36659;36660;36661;36662;36663;36664 36659 7 LQQQQRPEDAEDGAEGGGK ______________________________ QRPEDAEDGAEGGGKRGEAGWEGGYPEIVK R L Q G K R 2 1 0 2 0 4 3 4 0 0 1 1 0 0 1 0 0 0 0 0 0 0 19 1 2011.9195 Q08J23;A0A140T9Y7 Q08J23 10 28 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 3 9.5821E-09 69.747 2 2 0.83052 1.2622 46.566 4 Linear 1.0971 1.2106 0.83045 2 0 Median 0.62274 0.54067 2.5885 2 0 Median 24474000 11648000 12827000 19960000 8715200 11245000 4513900 2932600 1581300 8808 1694 9015 23384;23385;23386;23387 36665;36666;36667;36668;36669 36665 5 LQQSHPLSATQIQVK ALEDKVKALCAEADRLQQSHPLSATQIQVK LQQSHPLSATQIQVKREELITNWEQIRTLA R L Q V K R 1 0 0 0 0 4 0 0 1 1 2 1 0 0 1 2 1 0 0 1 0 0 15 0 1676.921 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 321 335 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 1.3678E-07 103.6 2 1.6834 1.7582 0.51669 2 Median 1.6834 1.7582 0.51669 2 0 Median NaN NaN NaN 0 0 Median 49123000 16474000 32649000 49123000 16474000 32649000 0 0 0 8809 523 9016 23388;23389 36670;36671;36672 36672 3 LQQTEAELRK PVKVPLEVQEADEAKLQQTEAELRKVDEAI ADEAKLQQTEAELRKVDEAIALFQKML___ K L Q R K V 1 1 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1214.6619 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 1243 1252 VARS Valine--tRNA ligase yes no 2;3 0.0095463 53.493 2 1.2988 1.4181 1.8242 2 Median 1.2988 1.4181 1.8242 2 0 Median NaN NaN NaN 0 0 Median 22133000 9077400 13056000 22133000 9077400 13056000 0 0 0 8810 363 9017 23390;23391 36673;36674 36673 2 LQQTLEEVK TLQTVEREKTLITEKLQQTLEEVKTLTQEK TLITEKLQQTLEEVKTLTQEKDDLKQLQES K L Q V K T 0 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 1086.5921 A0A087X0P0;Q02224;D6RBW0 A0A087X0P0 917 925 CENPE Kinesin-like protein;Centromere-associated protein E yes no 2 0.046824 39.305 1 1.4343 1.2605 NaN 1 Median NaN NaN NaN 0 0 Median 1.4343 1.2605 NaN 1 0 Median 999760 391430 608320 0 0 0 999760 391430 608320 8811 445 9018 23392 36675 36675 1 LQQYYIFIPSK PVKCAVSSKYQTVEKLQQYYIFIPSKFKDT TVEKLQQYYIFIPSKFKDTYLVYILNELAG K L Q S K F 0 0 0 0 0 2 0 0 0 2 1 1 0 1 1 1 0 0 2 0 0 0 11 0 1398.7547 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;F5H1N9 Q53GJ1 231 241 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 4.2547E-10 131.28 2 2 1.1505 1.1751 4.8921 4 Linear 1.0374 1.1424 1.4754 2 0 Median 1.2932 1.0607 3.8138 2 0 Median 165000000 69777000 95228000 100390000 43262000 57131000 64612000 26515000 38097000 8812 313 9019 23393;23394;23395;23396 36676;36677;36678;36679;36680;36681 36678 6 LQRMIPK SDMMGNTNEPSTRVRLQRMIPKKTETITGH NEPSTRVRLQRMIPKKTETITGHLILPNFI R L Q P K K 0 1 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 7 1 884.52659 H7BZU7;F5H6W4;B7Z5K0 H7BZU7 103 109 MARCH7 yes no 2 0.04052 56.095 1 0.63737 0.75669 NaN 1 Median 0.63737 0.75669 NaN 1 0 Median NaN NaN NaN 0 0 Median 323880000 175870000 148010000 323880000 175870000 148010000 0 0 0 8813 1097 9020 23397 36682 36682 838 1 LQSDDILPLGK NHYPVESSWIAPELRLQSDDILPLGKDSGP PELRLQSDDILPLGKDSGPLSDPITGKPYV R L Q G K D 0 0 0 2 0 1 0 1 0 1 3 1 0 0 1 1 0 0 0 0 0 0 11 0 1197.6605 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 350 360 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0030512 60.518 2 2 1.3235 1.1926 12.23 4 Median 1.226 1.289 15.157 2 0 Median 1.4415 1.1495 9.3767 2 0 Median 101020000 43121000 57896000 92683000 39560000 53123000 8334500 3561100 4773400 8814 122 9021 23398;23399;23400;23401 36683;36684;36685;36686;36687 36685 5 LQSDFAALLTGPLQR EYLNAYSGRKYQADRLQSDFAALLTGPLQR LQSDFAALLTGPLQRNPLCNLLSFTYKLDP R L Q Q R N 2 1 0 1 0 2 0 1 0 0 4 0 0 1 1 1 1 0 0 0 0 0 15 0 1628.8886 Q9BU64 Q9BU64 197 211 CENPO Centromere protein O yes yes 2 1.0093E-05 92.925 2 2 1.0856 1.0246 12.167 4 Median 0.94843 0.96465 10.166 2 0 Median 1.3137 1.1058 12.421 2 0 Median 41938000 21919000 20020000 25495000 14622000 10873000 16443000 7296300 9147100 8815 2003 9022 23402;23403;23404;23405 36688;36689;36690;36691;36692;36693;36694;36695;36696 36689 9 LQSFEDLASISTYGFR KEDLDIVCERFTTSKLQSFEDLASISTYGF QSFEDLASISTYGFRGEALASISHVAHVTI K L Q F R G 1 1 0 1 0 1 1 1 0 1 2 0 0 2 0 3 1 0 1 0 0 0 16 0 1832.8945 H0Y818;Q5GJ64;Q53GX1;B2R6K0;P40692 H0Y818 77 92 MLH1 DNA mismatch repair protein Mlh1 yes no 2 0.00028006 84.289 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4573500 4573500 0 4573500 4573500 0 0 0 0 8816 843 9023 23406 36697 36697 1 LQSGICHLFR RVIDLRTSTSQAVFRLQSGICHLFRETLIN QAVFRLQSGICHLFRETLINKGFVEIQTPK R L Q F R E 0 1 0 0 1 1 0 1 1 1 2 0 0 1 0 1 0 0 0 0 0 0 10 0 1229.6339 D3DP78;A0A140VJW5;P14868;Q53T60;C9J7S3;C9JLC1 D3DP78 165 174 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 0.023569 26.673 1 1.2769 1.3108 NaN 1 Median 1.2769 1.3108 NaN 1 0 Median NaN NaN NaN 0 0 Median 4970500 1618700 3351900 4970500 1618700 3351900 0 0 0 8817 610 9024 23407 36698 36698 1 LQSLEVGTDWDPK QGSLKLLGRSDQASRLQSLEVGTDWDPKER SRLQSLEVGTDWDPKERLFRNFGGLLGPLD R L Q P K E 0 0 0 2 0 1 1 1 0 0 2 1 0 0 1 1 1 1 0 1 0 0 13 0 1486.7304 Q9H1B5 Q9H1B5 643 655 XYLT2 Xylosyltransferase 2 yes yes 2 0.005822 46.891 2 1.8253 1.468 5.2507 2 Median NaN NaN NaN 0 0 Median 1.8253 1.468 5.2507 2 0 Median 9252800 3144000 6108800 0 0 0 9252800 3144000 6108800 8818 2025 9025 23408;23409 36699;36700 36700 2 LQSLTENLTK DKSRSLNESKIEIERLQSLTENLTKEHLML IEIERLQSLTENLTKEHLMLEEELRNLRLE R L Q T K E 0 0 1 0 0 1 1 0 0 0 3 1 0 0 0 1 2 0 0 0 0 0 10 0 1145.6292 P15924 P15924 1706 1715 DSP Desmoplakin yes yes 2 0.014443 49.06 1 0.3279 0.33726 NaN 1 Median 0.3279 0.33726 NaN 1 0 Median NaN NaN NaN 0 0 Median 10725000 7418200 3306500 10725000 7418200 3306500 0 0 0 8819 1486 9026 23410 36701 36701 1 LQSNPSLEGVSHVIVDEVHER GGALLFCTVGILLRKLQSNPSLEGVSHVIV LEGVSHVIVDEVHERDVNTDFLLILLKGLQ K L Q E R D 0 1 1 1 0 1 3 1 2 1 2 0 0 0 1 3 0 0 0 4 0 0 21 0 2343.1819 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 516 536 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 4 0.010169 24.227 1 1.4275 1.4516 NaN 1 Median 1.4275 1.4516 NaN 1 0 Median NaN NaN NaN 0 0 Median 27515000 10573000 16942000 27515000 10573000 16942000 0 0 0 8820 122 9027 23411 36702 36702 1 LQSSIQDLCVTWWEK ILNGILYALPESERKLQSSIQDLCVTWWEK LQSSIQDLCVTWWEKGLPAKEDTGKTAFVM K L Q E K G 0 0 0 1 1 2 1 0 0 1 2 1 0 0 0 2 1 2 0 1 0 0 15 0 1891.9138 Q86XI2;B3KRQ2;F8WE06 Q86XI2 140 154 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.011823 34.386 1 1.9146 1.9584 NaN 1 Median 1.9146 1.9584 NaN 1 0 Median NaN NaN NaN 0 0 Median 4350600 1610000 2740600 4350600 1610000 2740600 0 0 0 8821 1887 9028 23412 36703 36703 1 LQSSQEPEAPPPR SPKARRGKARRRAAKLQSSQEPEAPPPRDV AKLQSSQEPEAPPPRDVALLQGRANDLVKY K L Q P R D 1 1 0 0 0 2 2 0 0 0 1 0 0 0 4 2 0 0 0 0 0 0 13 0 1434.7103 Q5H909;A0A024R9Y7;Q9UNF1;Q5H907;B4DX55;B4DWM5 Q5H909 244 256 MAGED2 Melanoma-associated antigen D2 yes no 2 9.2533E-05 91.549 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17721000 0 17721000 17721000 0 17721000 0 0 0 8822 292 9029 23413;23414 36704;36705 36705 2 LQSVEYVVFDEADR TPGRLVHVAVEMSLKLQSVEYVVFDEADRL KLQSVEYVVFDEADRLFEMGFAEQLQEIIA K L Q D R L 1 1 0 2 0 1 2 0 0 0 1 0 0 1 0 1 0 0 1 3 0 0 14 0 1668.7995 Q8TDD1;F8VRX4 Q8TDD1 238 251 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.00013865 78.692 2 0.86962 0.8827 5.0054 2 Median 0.86962 0.8827 5.0054 2 0 Median NaN NaN NaN 0 0 Median 37536000 20543000 16993000 37536000 20543000 16993000 0 0 0 8823 1933 9030 23415;23416 36706;36707;36708 36707 3 LQTFLSK AKKENTAAENGLTVRLQTFLSKRPMPLSAR AENGLTVRLQTFLSKRPMPLSARGNSRLNI R L Q S K R 0 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 7 0 835.48035 Q6AHZ7;Q12789;Q6AWA4;H3BU55 Q6AHZ7 1156 1162 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.02668 85.272 2 0.79414 0.86663 4.9207 2 Median 0.79414 0.86663 4.9207 2 0 Median NaN NaN NaN 0 0 Median 78681000 44966000 33715000 78681000 44966000 33715000 0 0 0 8824 1699 9031 23417;23418 36709;36710 36709 2 LQTLAVLLR TQFPDLRLIQYDCGKLQTLAVLLRQLKAEG QYDCGKLQTLAVLLRQLKAEGHRVLIFTQM K L Q L R Q 1 1 0 0 0 1 0 0 0 0 4 0 0 0 0 0 1 0 0 1 0 0 9 0 1025.6597 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4 A0A0A0MS59 1786 1794 SRCAP Helicase SRCAP yes no 2 0.0056953 66.073 1 2 0.88614 0.8359 43.647 2 Median 0.61201 0.61393 NaN 1 0 Median 1.2831 1.1381 NaN 1 0 Median 10504000 5750300 4753800 9189700 5284800 3905000 1314400 465560 848800 8825 476 9032 23419;23420;23421 36711;36712;36713 36711 3 LQTLVSEQPNK ILNDQNKALKSEVQKLQTLVSEQPNKDVVE EVQKLQTLVSEQPNKDVVEQMEKCIQEKDE K L Q N K D 0 0 1 0 0 2 1 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 11 0 1255.6772 A0A024R663;Q86UP2 A0A024R663 717 727 KTN1 Kinectin yes no 2 0.00037232 83.647 1 2 0.65024 0.68573 39.144 3 Plateau 0.65024 0.6873 NaN 1 0 Median 0.4334 0.34904 1.9133 2 0 Median 21350000 12698000 8652300 15588000 8866000 6721600 5762700 3832000 1930700 8826 197 9033 23422;23423;23424 36714;36715;36716;36717;36718 36714 5 LQTPNTFPK EAAEEAETPQAKKIKLQTPNTFPKRKKGEK QAKKIKLQTPNTFPKRKKGEKRASSPFRRV K L Q P K R 0 0 1 0 0 1 0 0 0 0 1 1 0 1 2 0 2 0 0 0 0 0 9 0 1044.5604 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 605 613 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.00038357 100.02 2 2 0.94175 0.88402 27.986 4 Median 1.0591 1.1728 15.413 2 0 Median 0.91683 0.74069 0.45734 2 0 Median 121700000 55173000 66523000 106480000 47668000 58811000 15216000 7504100 7712300 8827 468 9034 23425;23426;23427;23428 36719;36720;36721;36722;36723;36724;36725 36719 7 LQTPQSPLVR PLLTYQDRSDNKLYRLQTPQSPLVRPSMYD NKLYRLQTPQSPLVRPSMYDYYDMDNYPIG R L Q V R P 0 1 0 0 0 2 0 0 0 0 2 0 0 0 2 1 1 0 0 1 0 0 10 0 1137.6506 Q9H6S8;Q6DKI9;Q9BSR4;B7Z1W6;Q9H9Y6;Q4QRK8 Q9H6S8 73 82 POLR1B DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA2 yes no 2 0.015301 57.859 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5990400 0 5990400 5990400 0 5990400 0 0 0 8828 1085 9035 23429 36726 36726 1 LQTQASATVAIPK KLDAVMKARKDIVARLQTQASATVAIPKEH ARLQTQASATVAIPKEHHRFVIGKNGEKLQ R L Q P K E 3 0 0 0 0 2 0 0 0 1 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1326.7507 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H0Y394;C9J5E5;C9JIZ1;H7C0A4;C9JZI8 A0A024R4E5 147 159 HDLBP Vigilin yes no 2 0.00013556 73.632 2 1 1.8429 1.9439 30.739 3 Plateau 1.7648 1.8297 8.5626 2 0 Median 1.3186 1.0856 NaN 1 0 Median 39386000 17165000 22222000 37008000 16197000 20811000 2378400 967250 1411200 8829 154 9036 23430;23431;23432 36727;36728;36729 36728 3 LQTQVFK DYILGLKIEDFLERRLQTQVFKLGLAKSIH IEDFLERRLQTQVFKLGLAKSIHHARVLIR R L Q F K L 0 0 0 0 0 2 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 7 0 862.49125 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 110 116 RPS9 40S ribosomal protein S9 yes no 2 0.011663 107.74 2 2 0.95435 1.1732 24.853 4 Linear 0.92434 1.0925 7.0361 2 0 Median 0.84798 0.71482 1.9758 2 0 Median 1570400000 824710000 745700000 1458300000 766490000 691850000 112070000 58221000 53848000 8830 157 9037 23433;23434;23435;23436 36730;36731;36732;36733;36734;36735;36736;36737 36731 8 LQTSEAALSSSQAEVASLR ERRGLMSQLEEKERRLQTSEAALSSSQAEV EAALSSSQAEVASLRQETVAQAALLTEREE R L Q L R Q 4 1 0 0 0 2 2 0 0 0 3 0 0 0 0 5 1 0 0 1 0 0 19 0 1946.9909 A0A024RCS7;Q9BW19;B4DMA8 A0A024RCS7 255 273 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 1.1962E-39 155.28 2 1 0.87668 0.87888 42.691 3 Median 0.79622 0.81523 10.632 2 0 Median 1.914 1.6881 NaN 1 0 Median 34696000 17320000 17376000 31042000 16383000 14659000 3653900 937750 2716100 8831 371 9038 23437;23438;23439 36738;36739;36740;36741 36740 4 LQTSLTCNSMVLFDHVGCLK KLAEAERVGLHKVFKLQTSLTCNSMVLFDH TCNSMVLFDHVGCLKKYDTVLDILRDFFEL K L Q L K K 0 0 1 1 2 1 0 1 1 0 4 1 1 1 0 2 2 0 0 2 0 0 20 0 2322.117 P11388 P11388 991 1010 TOP2A DNA topoisomerase 2-alpha yes yes 3 9.7655E-14 109.66 2 6 0.97317 0.98645 17.496 7 Median 0.85146 0.96619 2.9343 2 0 Median 1.3797 1.1058 21.25 5 0 Median 428670000 238570000 190100000 241870000 149770000 92099000 186800000 88795000 98003000 8832 1471 9039;9040 23440;23441;23442;23443;23444;23445;23446;23447 36742;36743;36744;36745;36746;36747;36748;36749;36750;36751;36752;36753;36754 36751 1204 13 LQTSSVLVSGLR YSRQLYVLGHEAMKRLQTSSVLVSGLRGLG MKRLQTSSVLVSGLRGLGVEIAKNIILGGV R L Q L R G 0 1 0 0 0 1 0 1 0 0 3 0 0 0 0 3 1 0 0 2 0 0 12 0 1258.7245 A0A024R1A3;P22314;Q5JRS1;Q5JRS3;Q5JRS2;Q5JRR9;Q5JRS0 A0A024R1A3 70 81 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.00090263 64.103 2 1.9851 1.9807 8.3689 2 Median 1.9851 1.9807 8.3689 2 0 Median NaN NaN NaN 0 0 Median 23982000 8422000 15560000 23982000 8422000 15560000 0 0 0 8833 74 9041 23448;23449 36755;36756 36756 2 LQVDALIDTIK GMAAVKKKSLCIQMKLQVDALIDTIKKSKL IQMKLQVDALIDTIKKSKLHFVHCFLPVAE K L Q I K K 1 0 0 2 0 1 0 0 0 2 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1227.7075 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8 A0A0D9SFK2 1026 1036 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.0078138 51.927 1 1.8204 1.9224 NaN 1 Median 1.8204 1.9224 NaN 1 0 Median NaN NaN NaN 0 0 Median 4257000 1738300 2518800 4257000 1738300 2518800 0 0 0 8834 12 9042 23450 36757 36757 1 LQVEELLK RLRETEILFHSSLLRLQVEELLKEVRLSEK FHSSLLRLQVEELLKEVRLSEKKKDRIDAF R L Q L K E 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 8 0 970.5699 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 86 93 NOL6 Nucleolar protein 6 yes no 2 0.00029372 134.3 4 1 1.5917 1.7022 14.895 3 Median 1.536 1.7573 4.5063 2 0 Median 1.7474 1.3658 NaN 1 0 Median 366890000 162160000 204730000 350650000 155760000 194890000 16235000 6400900 9833900 8835 2038 9043 23451;23452;23453;23454;23455 36758;36759;36760;36761;36762;36763;36764;36765;36766 36759 9 LQVELDNVTGLLSQSDSK EGERVRTELADKVTKLQVELDNVTGLLSQS ELDNVTGLLSQSDSKSSKLTKDFSALESQL K L Q S K S 0 0 1 2 0 2 1 1 0 0 4 1 0 0 0 3 1 0 0 2 0 0 18 0 1945.0004 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1278 1295 MYH9 Myosin-9 yes no 2 1.0327E-16 121.13 2 2 2.2261 2.2069 11.124 4 Median 1.7551 2.0503 2.3362 2 0 Median 2.8843 2.4516 6.8058 2 0 Median 758110000 258920000 499190000 605740000 220540000 385200000 152370000 38376000 113990000 8836 81 9044 23456;23457;23458;23459 36767;36768;36769;36770;36771;36772;36773;36774;36775 36774 9 LQVGQGVSLTLK LTSHLNDTFRFDSEKLQVGQGVSLTLKTTE SEKLQVGQGVSLTLKTTEPGVTGLLLAVEG K L Q L K T 0 0 0 0 0 2 0 2 0 0 3 1 0 0 0 1 1 0 0 2 0 0 12 0 1241.7343 Q14690;B4DH82 Q14690 970 981 PDCD11 Protein RRP5 homolog yes no 2 0.0021139 59.418 2 1.1696 1.3114 0.85595 2 Median 1.1696 1.3114 0.85595 2 0 Median NaN NaN NaN 0 0 Median 162180000 73373000 88807000 162180000 73373000 88807000 0 0 0 8837 1741 9045 23460;23461 36776;36777;36778 36778 3 LQVLIESK GTELFRDSGTMWQLKLQVLIESKSPDIAML GTMWQLKLQVLIESKSPDIAMLFEEAFVHL K L Q S K S 0 0 0 0 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 928.55933 B3KQ21;Q9NYH9;B3KX32 B3KQ21 410 417 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 2.8185E-05 138.26 2 2 1.2037 1.1516 3.0163 4 Median 0.99603 1.121 3.0941 2 0 Median 1.4593 1.1672 1.1798 2 0 Median 275930000 131750000 144180000 249890000 120940000 128960000 26033000 10809000 15224000 8838 925 9046 23462;23463;23464;23465 36779;36780;36781;36782;36783;36784;36785;36786 36782 8 LQVLVGDVLK AELHKRVQGTPVASKLQVLVGDVLKTDLPF PVASKLQVLVGDVLKTDLPFFDTCVANLPY K L Q L K T 0 0 0 1 0 1 0 1 0 0 3 1 0 0 0 0 0 0 0 3 0 0 10 0 1082.6699 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2;D6RCL3 A8K9K8 107 116 DIMT1 Probable dimethyladenosine transferase yes no 2 0.0079558 56.729 2 2 1.0315 0.94484 7.9026 4 Median 0.85137 0.89076 0.19409 2 0 Median 1.253 1.019 2.5416 2 0 Median 75296000 37948000 37348000 56574000 29813000 26762000 18722000 8135500 10586000 8839 786 9047 23466;23467;23468;23469 36787;36788;36789;36790;36791;36792;36793 36789 7 LQVTMPGIK ISASGPELQGAGHSKLQVTMPGIKVGGSGV GAGHSKLQVTMPGIKVGGSGVNVNAKGLDL K L Q I K V 0 0 0 0 0 1 0 1 0 1 1 1 1 0 1 0 1 0 0 1 0 0 9 0 985.56304 Q09666;B4DTV0 Q09666 244 252 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.0036175 61.962 1 1.1587 1.1696 NaN 1 Median 1.1587 1.1696 NaN 1 0 Median NaN NaN NaN 0 0 Median 27351000 11653000 15697000 27351000 11653000 15697000 0 0 0 8840 1696 9048 23470 36794 36794 1529 1 LQVTNVLSQPLTQATVK PEGSASDTHEQAILRLQVTNVLSQPLTQAT VTNVLSQPLTQATVKLEHAKSVASRATVLQ R L Q V K L 1 0 1 0 0 3 0 0 0 0 3 1 0 0 1 1 3 0 0 3 0 0 17 0 1839.0466 B2RE46;P04844;B4DJL0;Q5JYR4;Q5JYR7 B2RE46 290 306 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2 0.016352 27.681 1 0.84948 0.85735 NaN 1 Median 0.84948 0.85735 NaN 1 0 Median NaN NaN NaN 0 0 Median 8058900 4149700 3909200 8058900 4149700 3909200 0 0 0 8841 894 9049 23471 36795 36795 1 LQVVDQPLPVR FHSPNPEIPALLDGRLQVVDQPLPVRGGNV LDGRLQVVDQPLPVRGGNVGINSFGFGGSN R L Q V R G 0 1 0 1 0 2 0 0 0 0 2 0 0 0 2 0 0 0 0 3 0 0 11 0 1262.7347 A0A0U1RQF0;P49327 A0A0U1RQF0 374 384 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 5.164E-10 129.85 2 2 1.4212 1.5764 6.7742 2 Median 1.4212 1.5764 6.7742 2 0 Median NaN NaN NaN 0 0 Median 120020000 47341000 72676000 117050000 47341000 69708000 2968100 0 2968100 8842 587 9050 23472;23473;23474;23475 36796;36797;36798;36799;36800 36796 5 LQVVGR SATKVTADVINAAEKLQVVGRAGTGVDNVD ADVINAAEKLQVVGRAGTGVDNVDLEAATR K L Q G R A 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 6 0 670.41261 O43175;V9HW79;Q5SZU1;B3KSC3 O43175 70 75 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 0.039067 89.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8843 1382 9051 23476 36801 36801 1 LQVVLNESNADTYAGRPLPSK KKMENIQKLGNYTLKLQVVLNESNADTYAG ESNADTYAGRPLPSKAIKFSVKEGKPEKFS K L Q S K A 2 1 2 1 0 1 1 1 0 0 3 1 0 0 2 2 1 0 1 2 0 0 21 1 2271.1859 A6NHR9;J3KTL8;J3QSH1 A6NHR9 792 812 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 9.093E-10 86.625 2 2 1.3086 1.2767 2.0004 4 Median 1.1002 1.2601 2.2722 2 0 Median 1.5231 1.2869 1.5469 2 0 Median 74894000 34529000 40365000 58657000 28249000 30409000 16237000 6280300 9956800 8844 684 9052 23477;23478;23479;23480 36802;36803;36804;36805;36806;36807;36808;36809 36804 8 LQVWDTAGQER DFKIRTVDIEGKKIKLQVWDTAGQERFKTI KKIKLQVWDTAGQERFKTITTAYYRGAMGI K L Q E R F 1 1 0 1 0 2 1 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 11 0 1301.6364 A0A024RB27;Q504R6;P51153;D3DV69 A0A024RB27 59 69 hCG_24991;RAB13;hCG_1996054 Ras-related protein Rab-13 yes no 2 0.042997 44.318 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 895600 0 895600 0 0 0 895600 0 895600 8845 322 9053 23481;23482 36810;36811 36810 2 LQWDLGLGHLPR AWLKVMEKAHINLVRLQWDLGLGHLPRFFG LVRLQWDLGLGHLPRFFGTAVTCLLSPHSQ R L Q P R F 0 1 0 1 0 1 0 2 1 0 4 0 0 0 1 0 0 1 0 0 0 0 12 0 1403.7674 B3KMR5;Q5JTH9;B3KY97 B3KMR5 404 415 RRP12 RRP12-like protein yes no 3 5.7107E-05 75.819 2 2 1.1346 1.0863 12.64 3 Median 1.0742 1.1914 NaN 1 0 Median 1.1984 1.004 11.144 2 0 Median 71214000 39585000 31629000 53763000 31021000 22742000 17451000 8564400 8887000 8846 907 9054 23483;23484;23485;23486 36812;36813;36814;36815;36816;36817 36813 6 LQWQTTLGHAVLK EVFKAFYLGKHSGRKLQWQTTLGHAVLKAE RKLQWQTTLGHAVLKAEFKEGKKEFQVSLF K L Q L K A 1 0 0 0 0 2 0 1 1 0 3 1 0 0 0 0 2 1 0 1 0 0 13 0 1493.8354 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 567 579 CUL4A Cullin-4A yes no 3 0.00032189 71.176 1 0.96675 0.9889 NaN 1 Median 0.96675 0.9889 NaN 1 0 Median NaN NaN NaN 0 0 Median 25684000 13740000 11944000 25684000 13740000 11944000 0 0 0 8847 1718 9055 23487 36818 36818 1 LQWTSTDGLGVLIISPTR KTLAFLVPVLEALYRLQWTSTDGLGVLIIS TSTDGLGVLIISPTRELAYQTFEVLRKVGK R L Q T R E 0 1 0 1 0 1 0 2 0 2 3 0 0 0 1 2 3 1 0 1 0 0 18 0 1956.068 Q13206;Q86VR6;E9PIF2;Q59EC7 Q13206 134 151 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.0019631 52.555 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1945500 1945500 0 1945500 1945500 0 0 0 0 8848 1708 9056 23488 36819 36819 1 LQYAVSGLEPLAWSEDHR AAFRLMVTRREPAVKLQYAVSGLEPLAWSE AVSGLEPLAWSEDHRVSVSTARSIAVLELI K L Q H R V 2 1 0 1 0 1 2 1 1 0 3 0 0 0 1 2 0 1 1 1 0 0 18 0 2070.0171 Q9UKN8;Q05CN7;F2Z356 Q9UKN8 60 77 GTF3C4 General transcription factor 3C polypeptide 4 yes no 3 0.013152 30.684 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11729000 0 11729000 11729000 0 11729000 0 0 0 8849 2107 9057 23489;23490 36820;36821 36821 2 LQYFMEQFYGIIR VSNMVAKNAEMHKNKLQYFMEQFYGIIRNV NKLQYFMEQFYGIIRNVDSNNKELSIAIRG K L Q I R N 0 1 0 0 0 2 1 1 0 2 1 0 1 2 0 0 0 0 2 0 0 0 13 0 1706.849 P78527;B4DL41 P78527 338 350 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0079469 49.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8850 1665 9058 23491 36822 36822 1453 1 LQYLIDLGR GHSFRRQYKPLSLNRLQYLIDLGRVDPSQP PLSLNRLQYLIDLGRVDPSQPIDLTQLVNG R L Q G R V 0 1 0 1 0 1 0 1 0 1 3 0 0 0 0 0 0 0 1 0 0 0 9 0 1089.6182 E5RIZ4;B2R739;Q9P015;E5RHF4 E5RIZ4 42 50 MRPL15 39S ribosomal protein L15, mitochondrial yes no 2 0.024253 55.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4658100 0 4658100 4658100 0 4658100 0 0 0 8851 847 9059 23492 36823 36823 1 LQYNFDTIDQQFCDLADNK RNLSFNELYPSGTLKLQYNFDTIDQQFCDL FDTIDQQFCDLADNKDTAECDIAEVDGELF K L Q N K D 1 0 2 4 1 3 0 0 0 1 2 1 0 2 0 0 1 0 1 0 0 0 19 0 2347.0427 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1553 1571 AHCTF1 Protein ELYS yes no 2 7.8318E-06 76.358 2 2 1.9913 1.7953 36.629 4 Median 1.2329 1.2682 11.037 2 0 Median 2.9882 2.3685 1.0685 2 0 Median 47328000 16087000 31240000 20312000 9414700 10898000 27015000 6672600 20343000 8852 1945 9060 23493;23494;23495;23496 36824;36825;36826;36827 36826 4 LRAEIDNVK NTKHEISEMNRMIQRLRAEIDNVKKQCANL NRMIQRLRAEIDNVKKQCANLQNAIADAEQ R L R V K K 1 1 1 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1056.5928 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76 CON__P13647 396 404 KRT5 Keratin, type II cytoskeletal 5 yes no 2;3 0.0018703 99.013 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70963000 70963000 0 70963000 70963000 0 0 0 0 + 8853 1162 9061 23497;23498 36828;36829 36828 2 LRAPTSTEANHIR ATWQQSSLSLRWASRLRAPTSTEANHIRLS SRLRAPTSTEANHIRLSCLAVGLALLKRCV R L R I R L 2 2 1 0 0 0 1 0 1 1 1 0 0 0 1 1 2 0 0 0 0 0 13 1 1464.7797 A8KA74;P78316;E9PFK5 A8KA74 672 684 NOP14 Nucleolar protein 14 yes no 3 0.0029247 66.989 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5800600 0 5800600 5800600 0 5800600 0 0 0 8854 790 9062 23499 36830 36830 1 LRDLEDSLAR QLSQLQKQLAAKEAKLRDLEDSLARERDTS AKEAKLRDLEDSLARERDTSRRLLAEKERE K L R A R E 1 2 0 2 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 1 1186.6306 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8 P02545 320 329 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 5.8985E-05 104.52 5 1 1.325 1.5132 22.571 6 Median 1.3717 1.5314 18.509 5 0 Median 1.1588 1.0544 NaN 1 0 Median 811150000 349040000 462110000 804300000 345750000 458550000 6848000 3286800 3561200 8855 1440 9063 23500;23501;23502;23503;23504;23505 36831;36832;36833;36834;36835;36836;36837;36838;36839;36840 36831 10 LRDPAQQVR FPNLVDPWTPHLYARLRDPAQQVRKTAGLV PHLYARLRDPAQQVRKTAGLVMTHLILKDM R L R V R K 1 2 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 9 1 1081.5992 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1101 1109 NCAPD2 Condensin complex subunit 1 yes no 2;3 2.9143E-08 125.82 4 1 0.83713 0.98023 16.096 5 Median 0.83112 0.96911 5.9839 4 0 Median 1.6566 1.3615 NaN 1 0 Median 572070000 300790000 271290000 543490000 288970000 254520000 28584000 11815000 16769000 8856 908 9064 23506;23507;23508;23509;23510 36841;36842;36843;36844;36845;36846;36847;36848;36849;36850 36841 10 LRDQGGVVLR KYNARDTVFYRAAVRLRDQGGVVLRQARRE RAAVRLRDQGGVVLRQARREVDSIGLEEAS R L R L R Q 0 2 0 1 0 1 0 2 0 0 2 0 0 0 0 0 0 0 0 2 0 0 10 1 1111.6462 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41;B7Z926;Q59G93;Q9Y4Q3;B4DZC2 A0A024R4W4 655 664 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 3 0.058734 20.777 1 2.0011 1.8094 NaN 1 Median NaN NaN NaN 0 0 Median 2.0011 1.8094 NaN 1 0 Median 3367300 1174700 2192600 0 0 0 3367300 1174700 2192600 8857 162 9065 23511 36851 36851 1 LRDYQVR CTRFEDSPSYVKWGKLRDYQVRGLNWLISL PSYVKWGKLRDYQVRGLNWLISLYENGING K L R V R G 0 2 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 1 948.51411 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 180 186 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 3 0.015631 64.236 2 2.5101 2.8132 10.484 2 Median 2.5101 2.8132 10.484 2 0 Median NaN NaN NaN 0 0 Median 129750000 38499000 91255000 129750000 38499000 91255000 0 0 0 8858 1391 9066 23512;23513 36852;36853;36854 36853 3 LRECLPLIIFLR LTGVFAPRPSTGPHKLRECLPLIIFLRNRL PHKLRECLPLIIFLRNRLKYALTGDEVKKI K L R L R N 0 2 0 0 1 0 1 0 0 2 4 0 0 1 1 0 0 0 0 0 0 0 12 1 1541.9116 B2R491;P62701;Q96IR1;Q53HV1;B7Z1M6 B2R491 38 49 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2;3 8.7553E-06 103.88 15 3 1.008 1.0199 21.126 13 Median 1.0372 1.1095 20.933 10 0 Median 0.95349 0.858 9.9853 3 0 Plateau 331100000 167300000 163790000 78315000 35787000 42527000 252780000 131520000 121270000 8859 824 9067 23514;23515;23516;23517;23518;23519;23520;23521;23522;23523;23524;23525;23526;23527;23528;23529;23530;23531 36855;36856;36857;36858;36859;36860;36861;36862;36863;36864;36865;36866;36867;36868;36869;36870;36871;36872;36873;36874;36875;36876;36877;36878;36879 36876 25 LREDENAEPVGTTYQK NGLARLSSPVLHRLRLREDENAEPVGTTYQ REDENAEPVGTTYQKTDAAVEMKRINREQF R L R Q K T 1 1 1 1 0 1 3 1 0 0 1 1 0 0 1 0 2 0 1 1 0 0 16 1 1848.8854 Q16643;D6R9W4;B3KSQ7 Q16643 150 165 DBN1 Drebrin yes no 3 0.04264 20.091 2 1.5017 1.3179 22.938 2 Median NaN NaN NaN 0 0 Median 1.5017 1.3179 22.938 2 0 Median 4085700 1736000 2349800 0 0 0 4085700 1736000 2349800 8860 1773 9068 23532;23533 36880;36881 36880 2 LREDLER DGKYSQVLANGLDNKLREDLERLKKIRAHR LANGLDNKLREDLERLKKIRAHRGLRHFWG K L R E R L 0 2 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 929.49304 P62269;J3JS69 P62269 107 113 RPS18 40S ribosomal protein S18 yes no 2;3 2.8485E-10 164.72 4 1.0649 1.1883 4.9839 4 Median 1.0649 1.1883 4.9839 4 0 Median NaN NaN NaN 0 0 Median 1013100000 485250000 527890000 1013100000 485250000 527890000 0 0 0 8861 1639 9069 23534;23535;23536;23537 36882;36883;36884;36885;36886;36887 36882 6 LREFEEGLVSQYK TEAEKSTKTRKETQKLREFEEGLVSQYKFY QKLREFEEGLVSQYKFYLENLEQMVKDWKQ K L R Y K F 0 1 0 0 0 1 3 1 0 0 2 1 0 1 0 1 0 0 1 1 0 0 13 1 1596.8148 A8K905;Q8WTT2;B4DXL4 A8K905 294 306 NOC3L Nucleolar complex protein 3 homolog yes no 3 0.019446 30.961 2 1.0719 0.89495 1.272 2 Median NaN NaN NaN 0 0 Median 1.0719 0.89495 1.272 2 0 Median 7974200 3759400 4214700 0 0 0 7974200 3759400 4214700 8862 780 9070 23538;23539 36888;36889 36888 2 LRENQLPR VMTKEEVTELLARYKLRENQLPRIQAGDPV ELLARYKLRENQLPRIQAGDPVARYFGIKR K L R P R I 0 2 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 8 1 1024.5778 A0A087WVZ9;E5KT65;P19388;B4DJ89;A0A087WWX0;A0A0A0MQR7 A0A087WVZ9 138 145 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 3 0.036229 35.445 1 1.1801 1.2244 NaN 1 Median 1.1801 1.2244 NaN 1 0 Median NaN NaN NaN 0 0 Median 12876000 5910200 6965400 12876000 5910200 6965400 0 0 0 8863 423 9071 23540 36890 36890 1 LREQVEER IDCFSEVPTSVFGEKLREQVEERLSFYETG TSVFGEKLREQVEERLSFYETGEIPRKNLD K L R E R L 0 2 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 1 1057.5516 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 397 404 NOP56 Nucleolar protein 56 yes no 2;3 0.0013258 139.74 2 0.69804 0.75971 2.6799 2 Median 0.69804 0.75971 2.6799 2 0 Median NaN NaN NaN 0 0 Median 139860000 77381000 62475000 139860000 77381000 62475000 0 0 0 8864 785 9072 23541;23542 36891;36892;36893;36894 36893 4 LRFESQEMK TSRVFNGEPGAHDAKLRFESQEMKGIGTPP GAHDAKLRFESQEMKGIGTPPNTTPIKNGS K L R M K G 0 1 0 0 0 1 2 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 9 1 1166.5754 O96028;Q05CW4;D6R9V2;D6RIS1 O96028 98 106 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.0040619 68.371 1 0.98524 1.1167 NaN 1 Median 0.98524 1.1167 NaN 1 0 Median NaN NaN NaN 0 0 Median 16845000 9895700 6949200 16845000 9895700 6949200 0 0 0 8865 1435 9073 23543 36895 36895 1135 1 LRGDAAAGPGPGAGAGAAAEPEPR PCAQLSASLAAFYGRLRGDAAAGPGPGAGA GPGAGAGAAAEPEPRRRLEIVFVSSDQDQR R L R P R R 8 2 0 1 0 0 2 6 0 0 1 0 0 0 4 0 0 0 0 0 0 0 24 1 2115.0457 Q6DKJ4;A0A0G2JQK5 Q6DKJ4 60 83 NXN Nucleoredoxin yes no 3 5.1074E-14 86.617 1 1.9575 1.9801 NaN 1 Median 1.9575 1.9801 NaN 1 0 Median NaN NaN NaN 0 0 Median 10879000 3242400 7636900 10879000 3242400 7636900 0 0 0 8866 1841 9074 23544 36896;36897;36898 36897 3 LRLDSIVIQQGR DNTVEERIVERAEMKLRLDSIVIQQGRLVD EMKLRLDSIVIQQGRLVDQNLNKIGKDEML K L R G R L 0 2 0 1 0 2 0 1 0 2 2 0 0 0 0 1 0 0 0 1 0 0 12 1 1396.815 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;D7EZH4 O60264 625 636 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 3 0.00026749 59.975 1 2 2.6014 2.8347 NaN 1 Median 2.6014 2.8347 NaN 1 0 Median NaN NaN NaN 0 0 Median 156950000 28920000 128030000 100350000 28920000 71431000 56599000 0 56599000 8867 1391 9075 23545;23546;23547 36899;36900;36901 36899 3 LRLEEDKPAVER VAAAEEERRLRQRNRLRLEEDKPAVERCLE RNRLRLEEDKPAVERCLEELVFGDVENDED R L R E R C 1 2 0 1 0 0 3 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 12 2 1453.7889 B2RAX6;Q9Y5J1 B2RAX6 54 65 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 0.0034216 49.243 1 2 1.2551 1.177 9.3794 3 Median 0.99279 1.1197 NaN 1 0 Median 1.3021 1.2571 9.3074 2 0 Median 35942000 18345000 17597000 23582000 13895000 9687600 12360000 4450200 7909500 8868 876 9076 23548;23549;23550 36902;36903;36904 36902 3 LRNDLLNIIR KILKKHMSKDPTTQKLRNDLLNIIREKNLA PTTQKLRNDLLNIIREKNLAHPVIQNFSYE K L R I R E 0 2 2 1 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 10 1 1238.7459 Q15554;H3BR06;U3KQ35;H3BTA7;J3KSJ9 Q15554 233 242 TERF2 Telomeric repeat-binding factor 2 yes no 3 0.038135 41.54 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8869 1762 9077 23551 36905 36905 1 LRNDPLNQNK TGKMMPSKLQKNKQRLRNDPLNQNKGKPDL KNKQRLRNDPLNQNKGKPDLNTTLPIRQTA R L R N K G 0 1 3 1 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 10 1 1210.6418 Q9UBB5;O60535;X6RBL6;A0A024R2B8 Q9UBB5 225 234 MBD2;NY-CO-41 Methyl-CpG-binding domain protein 2 yes no 2 0.006203 75.378 1 0.71559 0.79446 NaN 1 Median 0.71559 0.79446 NaN 1 0 Median NaN NaN NaN 0 0 Median 10255000 6006000 4249400 10255000 6006000 4249400 0 0 0 8870 2096 9078 23552 36906 36906 1 LRPEREPR EALELLEHCGVCRERLRPEREPRLLPCLHS CGVCRERLRPEREPRLLPCLHSACSACLGP R L R P R L 0 3 0 0 0 0 2 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 8 2 1051.5887 B2R8R5;Q13263 B2R8R5 72 79 TRIM28 Transcription intermediary factor 1-beta yes no 3 0.013091 60.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1787000 0 1787000 1787000 0 1787000 0 0 0 8871 862 9079 23553 36907 36907 1 LRPFVDGTAGASDPPCVR ATRRPPPARVRVAVRLRPFVDGTAGASDPP FVDGTAGASDPPCVRGMDSCSLEIANWRNH R L R V R G 2 2 0 2 1 0 0 2 0 0 1 0 0 1 3 1 1 0 0 2 0 0 18 1 1913.9418 Q14807;H3BQB9;B4DNF2 Q14807 50 67 KIF22 Kinesin-like protein KIF22 yes no 3 1.2488E-05 68.243 2 2 1.0751 1.0573 28.091 4 Median 0.76167 0.8482 11.428 2 0 Median 1.52 1.3354 13.294 2 0 Median 90463000 45372000 45091000 72996000 38562000 34434000 17467000 6809900 10657000 8872 1745 9080 23554;23555;23556;23557 36908;36909;36910;36911;36912;36913 36909 6 LRPIAVIK VNTCHDAGISKKAIKLRPIAVIKG______ ISKKAIKLRPIAVIKG______________ K L R I K G 1 1 0 0 0 0 0 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 8 1 908.61712 Q9Y3I0 Q9Y3I0 497 504 RTCB tRNA-splicing ligase RtcB homolog yes yes 3 0.0043829 66.073 2 1.2967 1.5165 12.599 2 Median 1.2967 1.5165 12.599 2 0 Median NaN NaN NaN 0 0 Median 71544000 30060000 41484000 71544000 30060000 41484000 0 0 0 8873 2137 9081 23558;23559 36914;36915;36916;36917 36917 4 LRPSVLDLSTLSTVISK ALHPANRLAAYITGRLRPSVLDLSTLSTVI PSVLDLSTLSTVISKVASNAKVAASRKPRT R L R S K V 0 1 0 1 0 0 0 0 0 1 4 1 0 0 1 4 2 0 0 2 0 0 17 1 1828.067 B4DVS1;H3BU53 B4DVS1 78 94 MGA yes no 3 0.0071672 47.223 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5331500 5331500 0 5331500 5331500 0 0 0 0 8874 1042 9082 23560 36918 36918 1 LRPVNPNPLATK AACDATYNEIVTLERLRPVNPNPLATKGSF LERLRPVNPNPLATKGSFFKVTMAVPEDLR R L R T K G 1 1 2 0 0 0 0 0 0 0 2 1 0 0 3 0 1 0 0 1 0 0 12 1 1318.7721 P51116;I3L1Z2 P51116 122 133 FXR2 Fragile X mental retardation syndrome-related protein 2 yes no 2;3 0.00035301 97.813 2 1.3186 1.5392 6.8517 2 Median 1.3186 1.5392 6.8517 2 0 Median NaN NaN NaN 0 0 Median 80423000 33171000 47252000 80423000 33171000 47252000 0 0 0 8875 1593 9083 23561;23562 36919;36920;36921 36920 3 LRPVTLTEMNYSK CALYVPGVAFGDIDKLRPVTLTEMNYSKYG DKLRPVTLTEMNYSKYGAKECSFCEDPRFA K L R S K Y 0 1 1 0 0 0 1 0 0 0 2 1 1 0 1 1 2 0 1 1 0 0 13 1 1550.8127 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 423 435 PHF14 PHD finger protein 14 yes no 3 0.0028791 50.088 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8876 590 9084 23563 36922 36922 444 1 LRSDAGLESDTAMK ______________________________ KLRSDAGLESDTAMKKGETLRKQTEEKEKK K L R M K K 2 1 0 2 0 0 1 1 0 0 2 1 1 0 0 2 1 0 0 0 0 0 14 1 1492.7192 Q9NR30;Q3SWU7 Q9NR30 5 18 DDX21 Nucleolar RNA helicase 2 yes no 2 0.0001382 74.611 2 1.0538 1.1531 36.357 2 Median 1.0538 1.1531 36.357 2 0 Median NaN NaN NaN 0 0 Median 22998000 10181000 12817000 22998000 10181000 12817000 0 0 0 8877 2065 9085 23564;23565 36923;36924;36925;36926 36926 1894 4 LRSEIDNVK NSKIEISELNRVIQRLRSEIDNVKKQISNL NRVIQRLRSEIDNVKKQISNLQQSISDAEQ R L R V K K 0 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 1 1072.5877 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 408 416 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 0.00020454 112.75 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1858300000 1858300000 0 1776900000 1776900000 0 81440000 81440000 0 + 8878 1308;1309 9086 23566;23567;23568;23569;23570 36927;36928;36929;36930;36931 36927 5 LRSEIDNVKK NSKIEISELNRVIQRLRSEIDNVKKQISNL RVIQRLRSEIDNVKKQISNLQQSISDAEQR R L R K K Q 0 1 1 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 0 1 0 0 10 2 1200.6826 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 408 417 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 1.1681E-11 123.96 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21516000 21516000 0 21516000 21516000 0 0 0 0 + 8879 1308;1309 9087 23571;23572 36932;36933 36932 2 LRSPQILVPTLFNLLSR QRVTLILELLQHKKKLRSPQILVPTLFNLL SPQILVPTLFNLLSRCLEPLPQEQGNMEYT K L R S R C 0 2 1 0 0 1 0 0 0 1 5 0 0 1 2 2 1 0 0 1 0 0 17 1 1966.1728 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1 B2RWN5 1220 1236 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 3.2869E-05 69.148 2 1.0171 1.1406 14.537 2 Median 1.0171 1.1406 14.537 2 0 Median NaN NaN NaN 0 0 Median 114930000 59354000 55577000 114930000 59354000 55577000 0 0 0 8880 897 9088 23573;23574 36934;36935;36936;36937;36938 36935 5 LRTETQNALK GKGRKKIRKILKDDKLRTETQNALKEEEER LKDDKLRTETQNALKEEEERRKRIAERERE K L R L K E 1 1 1 0 0 1 1 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 10 1 1172.6513 A4LAA3;P46100;A0A096LNR8 A4LAA3 1489 1498 ATRX Transcriptional regulator ATRX yes no 2 4.6947E-05 106.2 1 0.87617 0.99265 NaN 1 Median 0.87617 0.99265 NaN 1 0 Median NaN NaN NaN 0 0 Median 16638000 9154100 7484300 16638000 9154100 7484300 0 0 0 8881 672 9089 23575 36939;36940 36940 2 LRVDPVNFK LPGALSELSDLHAHKLRVDPVNFKLLSHSL DLHAHKLRVDPVNFKLLSHSLLVTLASHLP K L R F K L 0 1 1 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 9 1 1086.6186 CON__P01966;E9LUX2;Q96T46;P78461;Q86YQ4;Q86YL2;Q6J1Z9;Q9NQT3;Q86YQ1;U6A216;Q4ZGM8;E9M4D4;E1B2D1;G3V1N2;V9H1D9;I1VZV6;D1MGQ2;A0A1K0GXZ1;A0A1S5UZ39;P69905 CON__P01966 92 100 HBA2;HBA1 Hemoglobin subunit alpha yes no 2;3 0.0010969 102.62 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87732000 87732000 0 87732000 87732000 0 0 0 0 + 8882 1149 9090 23576;23577;23578 36941;36942;36943 36943 3 LRVEFPR DAVYGRDGYDYDGYRLRVEFPRSGRGTGRG GYDYDGYRLRVEFPRSGRGTGRGGGGGGGG R L R P R S 0 2 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 7 1 915.52904 J3KTL2;Q07955;Q59FA2;A8K1L8;Q13242;A8K3M9;S4R3G0;B4DFT9 J3KTL2 84 90 SRSF1;SRSF9 Serine/arginine-rich splicing factor 1;Serine/arginine-rich splicing factor 9 no no 3 0.011469 84.244 2 1.3302 1.4903 5.767 2 Median 1.3302 1.4903 5.767 2 0 Median NaN NaN NaN 0 0 Median 138690000 59329000 79360000 138690000 59329000 79360000 0 0 0 8883 1333;1709 9091 23579;23580 36944;36945;36946;36947;36948 36945 5 LSAAIVLK TPMATRLLLCEHAEKLSAAIVLKNHHSRLS LCEHAEKLSAAIVLKNHHSRLSDLVNTAIL K L S L K N 2 0 0 0 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 813.53239 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 631 638 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.012693 67.032 1 1.3614 1.3516 NaN 1 Median 1.3614 1.3516 NaN 1 0 Median NaN NaN NaN 0 0 Median 8136400 3600900 4535400 8136400 3600900 4535400 0 0 0 8884 1070 9092 23581 36949 36949 1 LSAAVTEAFVR SSLDWDRACFTMDPKLSAAVTEAFVRLHEE MDPKLSAAVTEAFVRLHEEGIIYRSTRLVN K L S V R L 3 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 11 0 1162.6346 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 451 461 VARS Valine--tRNA ligase yes no 2 5.7131E-08 123.63 2 0.90892 0.98581 8.8914 2 Median 0.90892 0.98581 8.8914 2 0 Median NaN NaN NaN 0 0 Median 86689000 46523000 40165000 86689000 46523000 40165000 0 0 0 8885 363 9093 23582;23583 36950;36951;36952 36952 3 LSAEENPDDSEVPSSSGINSTK ERKTREKKSLQEKGKLSAEENPDDSEVPSS DDSEVPSSSGINSTKSQDKDVNEGETSDGV K L S T K S 1 0 2 2 0 0 3 1 0 1 1 1 0 0 2 6 1 0 0 1 0 0 22 0 2262.0135 Q9Y5Q9 Q9Y5Q9 42 63 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 6.3729E-08 66.285 2 1.0895 1.101 12.1 2 Median 1.0895 1.101 12.1 2 0 Median NaN NaN NaN 0 0 Median 19077000 8161400 10916000 19077000 8161400 10916000 0 0 0 8886 2150 9094 23584;23585 36953;36954;36955;36956 36954 4 LSAFFEEHISSVLSDYK YTPSKRSRIYSMSLRLSAFFEEHISSVLSD AFFEEHISSVLSDYKSALRFHKRNTITKRR R L S Y K S 1 0 0 1 0 0 2 0 1 1 2 1 0 2 0 4 0 0 1 1 0 0 17 0 1970.9626 Q8WWQ0;Q9NWP3 Q8WWQ0 1410 1426 PHIP PH-interacting protein yes no 3 4.9399E-05 53.773 3 0.73892 0.76469 3.0602 2 Median 0.73892 0.76469 3.0602 2 0 Median NaN NaN NaN 0 0 Median 42039000 21557000 20482000 42039000 21557000 20482000 0 0 0 8887 1942 9095 23586;23587;23588 36957;36958;36959;36960;36961;36962 36957 6 LSAGFDFK SPSAAGGQQKTRKPKLSAGFDFKQLYCKLC QKTRKPKLSAGFDFKQLYCKLCKRQFTSKQ K L S F K Q 1 0 0 1 0 0 0 1 0 0 1 1 0 2 0 1 0 0 0 0 0 0 8 0 883.44397 Q2TB10;B7Z4V7 Q2TB10 477 484 ZNF800 Zinc finger protein 800 yes no 2 0.012634 67.169 2 1.1249 1.1734 6.2413 2 Median 1.1249 1.1734 6.2413 2 0 Median NaN NaN NaN 0 0 Median 63834000 29745000 34090000 63834000 29745000 34090000 0 0 0 8888 1777 9096 23589;23590 36963;36964;36965;36966 36964 4 LSALAPLFGSLK KDAYTTLLNQLERFKLSALAPLFGSLKWNN RFKLSALAPLFGSLKWNNITEEAHKTVSLL K L S L K W 2 0 0 0 0 0 0 1 0 0 4 1 0 1 1 2 0 0 0 0 0 0 12 0 1215.7227 Q8IY21 Q8IY21 223 234 DDX60 Probable ATP-dependent RNA helicase DDX60 yes yes 2 0.0024379 58.592 2 1.5308 1.2849 1.8064 2 Median NaN NaN NaN 0 0 Median 1.5308 1.2849 1.8064 2 0 Median 2947500 1368800 1578700 0 0 0 2947500 1368800 1578700 8889 1896 9097 23591;23592 36967;36968;36969 36967 3 LSALGNVTTCNDYVALVHPDLDR NSLPDTVQIRRVEERLSALGNVTTCNDYVA TCNDYVALVHPDLDRETEEILADVLKVEVF R L S D R E 2 1 2 3 1 0 0 1 1 0 4 0 0 0 1 1 2 0 1 3 0 0 23 0 2542.2486 P56537 P56537 101 123 EIF6 Eukaryotic translation initiation factor 6 yes yes 3 3.9971E-17 108.37 1 2 1.0888 0.93646 18.199 3 Median 0.6603 0.70011 NaN 1 0 Median 1.1491 0.95731 3.1142 2 0 Median 42478000 25817000 16661000 23863000 15344000 8519600 18615000 10473000 8141500 8890 1619 9098 23593;23594;23595 36970;36971;36972;36973 36970 4 LSALGNVTTCNDYVALVHPDLDRETEEILADVLK NSLPDTVQIRRVEERLSALGNVTTCNDYVA DLDRETEEILADVLKVEVFRQTVADQVLVG R L S L K V 3 1 2 4 1 0 3 1 1 1 6 1 0 0 1 1 3 0 1 4 0 0 34 1 3782.9037 P56537 P56537 101 134 EIF6 Eukaryotic translation initiation factor 6 yes yes 4 1.4611E-44 117.6 2 0.64416 0.76862 1.8064 2 Median 0.64416 0.76862 1.8064 2 0 Median NaN NaN NaN 0 0 Median 338430000 195780000 142640000 338430000 195780000 142640000 0 0 0 8891 1619 9099 23596;23597 36974;36975 36975 2 LSALLFK EESVEQKRSKQNATKLSALLFKHKEQLRAE RSKQNATKLSALLFKHKEQLRAEILKKRAL K L S F K H 1 0 0 0 0 0 0 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 7 0 790.49528 E7ETD6;Q12830;Q9H5E0;J3QQQ8;J3KSK9;E9PE19;B4DJV8 E7ETD6 2455 2461 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.026752 86.866 2 0.7496 0.74841 2.116 2 Median 0.7496 0.74841 2.116 2 0 Median NaN NaN NaN 0 0 Median 41626000 23587000 18038000 41626000 23587000 18038000 0 0 0 8892 1224 9100 23598;23599 36976;36977;36978;36979 36979 4 LSASSLTMESFAFLWAGGR DTYNCDLHFKISRDRLSASSLTMESFAFLW SLTMESFAFLWAGGRASYGVSKGKVCFEMK R L S G R A 3 1 0 0 0 0 1 2 0 0 3 0 1 2 0 4 1 1 0 0 0 0 19 0 2029.9931 B4DLR3;Q00839;Q96BA7;B3KX72;Q5RI18 B4DLR3 265 283 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 1.3268E-06 83.617 2 2.0818 2.0685 NaN 1 Median 2.0818 2.0685 NaN 1 0 Median NaN NaN NaN 0 0 Median 11885000 2615500 9269600 11885000 2615500 9269600 0 0 0 8893 999 9101 23600;23601 36980;36981;36982 36981 790 3 LSATIPK KPLQVKDESSAATKKLSATIPKATKPQPVN ESSAATKKLSATIPKATKPQPVNTSSVTVK K L S P K A 1 0 0 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 7 0 728.44324 B2RMQ4;Q8WWK9 B2RMQ4 207 213 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.037624 60.76 1 0.913 0.98613 NaN 1 Median 0.913 0.98613 NaN 1 0 Median NaN NaN NaN 0 0 Median 35035000 19335000 15700000 35035000 19335000 15700000 0 0 0 8894 895 9102 23602 36983 36983 1 LSCLAVGLALLK SRLRAPTSTEANHIRLSCLAVGLALLKRCV HIRLSCLAVGLALLKRCVLMYGSLPSFHAI R L S L K R 2 0 0 0 1 0 0 1 0 0 5 1 0 0 0 1 0 0 0 1 0 0 12 0 1256.7526 A8KA74;P78316;E9PFK5 A8KA74 685 696 NOP14 Nucleolar protein 14 yes no 2 6.2879E-05 97.965 2 2 1.1905 1.0402 8.4458 4 Median 1.0649 1.0808 14.062 2 0 Median 1.2534 1.0402 1.2632 2 0 Median 22767000 11558000 11209000 18737000 9691100 9045600 4030800 1867000 2163700 8895 790 9103 23603;23604;23605;23606 36984;36985;36986;36987;36988;36989;36990;36991 36985 8 LSCPALGISK KSSWNQLQDLCRLAKLSCPALGISKRNLYD CRLAKLSCPALGISKRNLYDFEVEYLCDYK K L S S K R 1 0 0 0 1 0 0 1 0 1 2 1 0 0 1 2 0 0 0 0 0 0 10 0 1044.5638 O43463;Q14828 O43463 28 37 SUV39H1;MG44 Histone-lysine N-methyltransferase SUV39H1 yes no 2 0.00015294 95.608 2 2.0362 1.6457 9.7364 2 Median NaN NaN NaN 0 0 Median 2.0362 1.6457 9.7364 2 0 Median 14931000 5134100 9796500 0 0 0 14931000 5134100 9796500 8896 1385 9104 23607;23608 36992;36993;36994;36995 36995 4 LSCPITALGR PPQKAERVKQLQENRLSCPITALGRTMATF LQENRLSCPITALGRTMATFPVAPRYAKML R L S G R T 1 1 0 0 1 0 0 1 0 1 2 0 0 0 1 1 1 0 0 0 0 0 10 0 1086.5856 Q8IY37;F5H3Y4 Q8IY37 764 773 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.00016057 95.358 1 0.90949 0.90034 NaN 1 Median 0.90949 0.90034 NaN 1 0 Median NaN NaN NaN 0 0 Median 12314000 6856500 5457700 12314000 6856500 5457700 0 0 0 8897 1897 9105 23609 36996;36997 36997 2 LSCQNLGAVLDDVPVQGFFK SLRPIFLQPGRPLTRLSCQNLGAVLDDVPV LGAVLDDVPVQGFFKKAGATFRLKDGVLAY R L S F K K 1 0 1 2 1 2 0 2 0 0 3 1 0 2 1 1 0 0 0 3 0 0 20 0 2206.1092 Q14690;B4DH82;B4DES7 Q14690 359 378 PDCD11 Protein RRP5 homolog yes no 2 8.1276E-10 99.011 2 1.0061 1.0272 4.5996 2 Median 1.0061 1.0272 4.5996 2 0 Median NaN NaN NaN 0 0 Median 60369000 28020000 32349000 60369000 28020000 32349000 0 0 0 8898 1741 9106 23610;23611 36998;36999;37000;37001;37002 36999 5 LSCSTWNYQK RESDWDGIIACHQGKLSCSTWNYQKSTIGA CHQGKLSCSTWNYQKSTIGAYFLKPKELKK K L S Q K S 0 0 1 0 1 1 0 0 0 0 1 1 0 0 0 2 1 1 1 0 0 0 10 0 1285.5761 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 412 421 WDR36 WD repeat-containing protein 36 yes no 2 0.00095588 78.516 2 1 1.0226 0.8056 17.646 3 Median 0.90448 0.93244 21.914 2 0 Median 1.0226 0.8056 NaN 1 0 Median 50082000 24253000 25830000 44431000 21453000 22978000 5651500 2799700 2851800 8899 486 9107 23612;23613;23614 37003;37004;37005 37004 3 LSCTEHDPCGPNPLEPGEIR QHREGMLFISKLDGRLSCTEHDPCGPNPLE HDPCGPNPLEPGEIREYVPPPVPLPPGPST R L S I R E 0 1 1 1 2 0 3 2 1 1 2 0 0 0 4 1 1 0 0 0 0 0 20 0 2277.0154 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q9H6H8 B2RWP5 1931 1950 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 3 0.01257 21.398 2 1.5669 1.3473 10.787 2 Median NaN NaN NaN 0 0 Median 1.5669 1.3473 10.787 2 0 Median 4399900 1703600 2696300 0 0 0 4399900 1703600 2696300 8900 898 9108 23615;23616 37006;37007;37008 37008 3 LSDADLAGPLQK QLLASFLANNPFSCKLSDADLAGPLQKETQ SCKLSDADLAGPLQKETQKLQEMRAQRRTA K L S Q K E 2 0 0 2 0 1 0 1 0 0 3 1 0 0 1 1 0 0 0 0 0 0 12 0 1226.6507 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 441 452 NCAPD2 Condensin complex subunit 1 yes no 2 7.9658E-88 227.08 2 2 1.2094 1.2075 13.131 4 Median 0.91319 1.0769 1.1883 2 0 Median 1.603 1.3512 0.90439 2 0 Median 961490000 497690000 463800000 852390000 455240000 397150000 109100000 42450000 66653000 8901 908 9109 23617;23618;23619;23620 37009;37010;37011;37012;37013;37014;37015;37016;37017 37012 9 LSDESIFSAFLSVVGK GLRKMLDNFDCFGDKLSDESIFSAFLSVVG SDESIFSAFLSVVGKLRRGAKPEGKAIIDE K L S G K L 1 0 0 1 0 0 1 1 0 1 2 1 0 2 0 4 0 0 0 2 0 0 16 0 1697.8876 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1254 1269 NCAPD2 Condensin complex subunit 1 yes no 2 1.0638E-06 96.745 2 0.82941 0.83409 35.656 2 Median 0.82941 0.83409 35.656 2 0 Median NaN NaN NaN 0 0 Median 40112000 19662000 20449000 40112000 19662000 20449000 0 0 0 8902 908 9110 23621;23622 37018;37019 37018 2 LSDFNDITNMLLLK DKHFGKGGSKLLRMKLSDFNDITNMLLLKM KLSDFNDITNMLLLKMNKDSKPPGNLKECS K L S L K M 0 0 2 2 0 0 0 0 0 1 4 1 1 1 0 1 1 0 0 0 0 0 14 0 1635.8542 P78527 P78527 3656 3669 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.2106E-22 134.75 2 2 0.27563 0.22479 6.3483 2 Median NaN NaN NaN 0 0 Median 0.27563 0.22479 6.3483 2 0 Median 32133000 29996000 2137200 21979000 21979000 0 10154000 8017100 2137200 8903 1665 9111 23623;23624;23625;23626 37020;37021;37022;37023;37024 37020 1454 5 LSDGFNGADLR PITKHGEIDYEAIVKLSDGFNGADLRNVCT AIVKLSDGFNGADLRNVCTEAGMFAIRADH K L S L R N 1 1 1 2 0 0 0 2 0 0 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1163.5571 V9HW24;A0A087X2I1;P62333;H0YJC0 V9HW24 334 344 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 9.7016E-05 93.111 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6251900 6251900 0 6251900 6251900 0 0 0 0 8904 454 9112 23627;23628 37025;37026 37025 2 LSDGIGVMLPQVLK KTLRTLLEEEYFREKLSDGIGVMLPQVLKG KLSDGIGVMLPQVLKGMTSESDSIGLTPGE K L S L K G 0 0 0 1 0 1 0 2 0 1 3 1 1 0 1 1 0 0 0 2 0 0 14 0 1468.8323 P52701;A0A087WWJ1;Q1L838 P52701 647 660 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.00010416 67.207 2 1.9874 2.0086 7.2734 2 Median 1.9874 2.0086 7.2734 2 0 Median NaN NaN NaN 0 0 Median 13204000 4745400 8458700 13204000 4745400 8458700 0 0 0 8905 1601 9113 23629;23630 37027;37028 37028 1386 2 LSDIGEGIR LKTTAALRGQVVQFKLSDIGEGIREVTVKE QVVQFKLSDIGEGIREVTVKEWYVKEGDTV K L S I R E 0 1 0 1 0 0 1 2 0 2 1 0 0 0 0 1 0 0 0 0 0 0 9 0 958.50836 P11182;Q5VVL7 P11182 69 77 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 2 0.023196 56.378 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8507600 0 8507600 8507600 0 8507600 0 0 0 8906 1469 9114 23631 37029 37029 1 LSDLVNTAILIALNK EKLSAAIVLKNHHSRLSDLVNTAILIALNK LSDLVNTAILIALNKREYEIPSNLTPADVF R L S N K R 2 0 2 1 0 0 0 0 0 2 4 1 0 0 0 1 1 0 0 1 0 0 15 0 1596.9451 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 644 658 NUP133 Nuclear pore complex protein Nup133 yes no 2 2.9707E-07 106.62 2 1.2966 1.3075 0.86229 2 Median 1.2966 1.3075 0.86229 2 0 Median NaN NaN NaN 0 0 Median 12721000 5098700 7622200 12721000 5098700 7622200 0 0 0 8907 1070 9115 23632;23633 37030;37031;37032 37031 3 LSDLVNTAILIALNKR EKLSAAIVLKNHHSRLSDLVNTAILIALNK SDLVNTAILIALNKREYEIPSNLTPADVFF R L S K R E 2 1 2 1 0 0 0 0 0 2 4 1 0 0 0 1 1 0 0 1 0 0 16 1 1753.0462 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 644 659 NUP133 Nuclear pore complex protein Nup133 yes no 3 0.0001055 49.595 1 1.4218 1.2257 NaN 1 Median NaN NaN NaN 0 0 Median 1.4218 1.2257 NaN 1 0 Median 2646100 840070 1806100 0 0 0 2646100 840070 1806100 8908 1070 9116 23634 37033;37034 37034 2 LSDPELGVEEEPFHTIMK KGNAIYNLLPDIISRLSDPELGVEEEPFHT PELGVEEEPFHTIMKQLLSYITKDKQTESL R L S M K Q 0 0 0 1 0 0 4 1 1 1 2 1 1 1 2 1 1 0 0 1 0 0 18 0 2069.998 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1174 1191 NCAPD2 Condensin complex subunit 1 yes no 3 2.5853E-08 89.468 2 1.9272 2.1679 4.2259 2 Median 1.9272 2.1679 4.2259 2 0 Median NaN NaN NaN 0 0 Median 133660000 48050000 85608000 133660000 48050000 85608000 0 0 0 8909 908 9117 23635;23636 37035;37036;37037;37038 37038 742 4 LSDYDSSEEAIR QRNLCLHLKAEALIKLSDYDSSEEAIRTLD LIKLSDYDSSEEAIRTLDQISDADNIPGLL K L S I R T 1 1 0 2 0 0 2 0 0 1 1 0 0 0 0 3 0 0 1 0 0 0 12 0 1383.6154 Q6PGP7;D6RCE2 Q6PGP7 363 374 TTC37 Tetratricopeptide repeat protein 37 yes no 2 5.0482E-07 104.22 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8910 1855 9118 23637 37039 37039 1 LSEDEETVYNVFFAR LVILPQRKFQLHHLKLSEDEETVYNVFFAR LSEDEETVYNVFFARSRSALQSYLKRHESR K L S A R S 1 1 1 1 0 0 3 0 0 0 1 0 0 2 0 1 1 0 1 2 0 0 15 0 1817.8472 A0A024R0F1;Q9UNY4 A0A024R0F1 847 861 TTF2 Transcription termination factor 2 yes no 2 4.7863E-10 134.13 2 2 0.68505 0.71944 7.2821 2 Median 0.68505 0.71944 7.2821 2 0 Median NaN NaN NaN 0 0 Median 55305000 27800000 27505000 44921000 27800000 17121000 10384000 0 10384000 8911 44 9119 23638;23639;23640;23641 37040;37041;37042;37043;37044;37045;37046 37043 7 LSEELQGLDQLQLDNDVLR KACDYIQELRQSNHRLSEELQGLDQLQLDN LQGLDQLQLDNDVLRQQVEDLKNKNLLLRA R L S L R Q 0 1 1 3 0 3 2 1 0 0 6 0 0 0 0 1 0 0 0 1 0 0 19 0 2197.1226 B1AQP1;A0A0S2Z4U5;P22415 B1AQP1 233 251 USF1 Upstream stimulatory factor 1 yes no 2 3.9556E-05 68.83 1 0.55891 0.55326 NaN 1 Median 0.55891 0.55326 NaN 1 0 Median NaN NaN NaN 0 0 Median 12322000 6761500 5560400 12322000 6761500 5560400 0 0 0 8912 569 9120 23642 37047;37048;37049 37048 3 LSEELSGGR RLQRDLKRTVDARLKLSEELSGGRLKPKPI VDARLKLSEELSGGRLKPKPIDVQVITHHM K L S G R L 0 1 0 0 0 0 2 2 0 0 2 0 0 0 0 2 0 0 0 0 0 0 9 0 946.47197 A0A024RAI1;P61158;B4DT29;B4DXW1;B4DTI0;Q59FV6;B3KM55;B4E1U3;Q59GD5;B7Z9W3;Q9P1U1 A0A024RAI1 349 357 ACTR3;ACTR3B Actin-related protein 3;Actin-related protein 3B yes no 2 0.037075 51.193 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6073700 0 6073700 6073700 0 6073700 0 0 0 8913 304 9121 23643 37050 37050 1 LSEIPLTLHSVSELVR LQDEIAEDYGELGMKLSEIPLTLHSVSELV SEIPLTLHSVSELVRLCLRRSDVQEESEGS K L S V R L 0 1 0 0 0 0 2 0 1 1 4 0 0 0 1 3 1 0 0 2 0 0 16 0 1792.0094 Q9UIG0 Q9UIG0 678 693 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 5.5795E-09 102.38 2 2 22.712 22.38 35.359 4 Median 26.637 30.092 24.217 2 0 Median 20.271 17.576 16.516 2 0 Median 304280000 13353000 290930000 157810000 6870500 150940000 146470000 6482300 139990000 8914 2103 9122 23644;23645;23646;23647 37051;37052;37053;37054;37055;37056 37054 6 LSEIVTLAK LACDDLDEAARMVVKLSEIVTLAKQAHVDV ARMVVKLSEIVTLAKQAHVDVKFQLPI___ K L S A K Q 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 9 0 972.58555 B7ZAF6;E5KS55;B7Z9S6;B4DY87;B4DRV2;E5KS60;Q6N0B1;Q9P2R7;A0A0U1RQL1;Q9Y4T0;A0A0S2Z511 B7ZAF6 385 393 SUCLA2;DKFZp686D0880;DKFZp564P2062 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 2 0.00022612 105.57 1 1.5486 1.5869 NaN 1 Median 1.5486 1.5869 NaN 1 0 Median NaN NaN NaN 0 0 Median 10583000 4607100 5976400 10583000 4607100 5976400 0 0 0 8915 1109 9123 23648 37057 37057 1 LSELEAALQR AEQRGELAIKDANAKLSELEAALQRAKQDM DANAKLSELEAALQRAKQDMARQLREYQEL K L S Q R A 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1128.6139 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931;CON__Q9H552;CON__REFSEQ:XP_092267 CON__P05787 353 362 KRT8 Keratin, type II cytoskeletal 8 yes no 2 4.5935E-16 152.34 2 2 1.4378 1.3861 13.691 4 Median 1.0798 1.2262 1.2889 2 0 Median 1.9137 1.5538 0.1124 2 0 Median 269120000 126540000 142580000 243110000 117800000 125310000 26001000 8734200 17266000 + 8916 1156 9124 23649;23650;23651;23652 37058;37059;37060;37061;37062;37063;37064;37065 37060 8 LSELEPGTGDLR PACHQGLLDRETWHKLSELEPGTGDLRFLD WHKLSELEPGTGDLRFLDPNTLERLTYHQL K L S L R F 0 1 0 1 0 0 2 2 0 0 3 0 0 0 1 1 1 0 0 0 0 0 12 0 1285.6514 A0A075B730;A0A087X1U6;P58107 A0A075B730 163 174 EPPK1 Epiplakin no no 2 0.00022516 83.862 2 2.8463 3.0053 9.2887 2 Median 2.8463 3.0053 9.2887 2 0 Median NaN NaN NaN 0 0 Median 46228000 13096000 33132000 46228000 13096000 33132000 0 0 0 8917 397;1622 9125 23653;23654 37066;37067;37068 37068 2 LSELLPEEVEAEVK CLQKVGDRKNYASAKLSELLPEEVEAEVKA KLSELLPEEVEAEVKAAAEISMGTEVSEED K L S V K A 1 0 0 0 0 0 5 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 14 0 1583.8294 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 222 235 NOP58 Nucleolar protein 58 yes no 2 1.1777E-09 121.02 2 2 0.88689 0.9027 2.4479 4 Median 0.77313 0.91149 1.2929 2 0 Median 1.0236 0.88487 2.742 2 0 Median 1080400000 591700000 488650000 781630000 443910000 337720000 298720000 147800000 150930000 8918 2129 9126 23655;23656;23657;23658 37069;37070;37071;37072;37073;37074;37075;37076;37077;37078;37079;37080;37081;37082;37083 37073 15 LSELLR NLKLGIHEDSTNRRRLSELLRYHTSQSGDE HEDSTNRRRLSELLRYHTSQSGDEMTSLSE R L S L R Y 0 1 0 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 6 0 729.43849 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF9;Q504U7;Q05BW6;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7;Q92538 B4DMA2 413 418 HSP90AB1;HSP90Af;GBF1;EL52;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 no no 2 0.035157 115.83 2 2.1771 2.5512 1.9886 2 Median 2.1771 2.5512 1.9886 2 0 Median NaN NaN NaN 0 0 Median 615020000 189270000 425750000 615020000 189270000 425750000 0 0 0 8919 379;1348;1947 9127 23659;23660 37084;37085 37085 2 LSEMEAYLENIEK GKPREKSIVDDKFFKLSEMEAYLENIEKEE FKLSEMEAYLENIEKEEERKDDNDDEEEDI K L S E K E 1 0 1 0 0 0 4 0 0 1 2 1 1 0 0 1 0 0 1 0 0 0 13 0 1567.744 B3KPV5;O00566;U3KQ48 B3KPV5 207 219 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 0.00013155 79.82 1 1.3258 1.0394 NaN 1 Median NaN NaN NaN 0 0 Median 1.3258 1.0394 NaN 1 0 Median 3786000 1578700 2207300 0 0 0 3786000 1578700 2207300 8920 924 9128 23661 37086;37087 37086 2 LSENVIDR EADENENITVVKGIRLSENVIDRMKESSPS TVVKGIRLSENVIDRMKESSPSGSKSQRYS R L S D R M 0 1 1 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 944.49271 A4D1N4;C9JRZ6;Q9NX63;B7Z1X9;F8WAR4;F8WD73 A4D1N4 28 35 CHCHD3 MICOS complex subunit MIC19 yes no 2 0.0014375 109.01 1 2 1.8262 1.615 14.607 3 Median 1.1506 1.3109 NaN 1 0 Median 1.9396 1.6749 5.1464 2 0 Median 112850000 50589000 62264000 104140000 47717000 56421000 8715800 2872400 5843400 8921 664 9129 23662;23663;23664 37088;37089;37090;37091;37092;37093 37089 6 LSEQEELK TTQQVPHIEALLKRKLSEQEELKKKPRRSC EALLKRKLSEQEELKKKPRRSCTLPNYTKG K L S L K K 0 0 0 0 0 1 3 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 974.49204 A6NHR9;J3KTL8 A6NHR9 1696 1703 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0022722 101.28 2 0.99138 1.0378 23.825 2 Median 0.99138 1.0378 23.825 2 0 Median NaN NaN NaN 0 0 Median 37780000 20118000 17661000 37780000 20118000 17661000 0 0 0 8922 684 9130 23665;23666 37094;37095 37095 2 LSEQELQFR EQELKSEFEQNLSEKLSEQELQFRRLSQEQ QNLSEKLSEQELQFRRLSQEQVDNFTLDIN K L S F R R 0 1 0 0 0 2 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1148.5826 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 517 525 IMMT MICOS complex subunit MIC60 no no 2 0.00010359 99.7 2 1 1.368 1.3226 28.891 2 Median 0.9697 1.0782 NaN 1 0 Median 1.9298 1.6223 NaN 1 0 Median 117920000 78344000 39579000 113530000 76916000 36610000 4397300 1428300 2969000 8923 1774;1029;1128 9131 23667;23668;23669 37096;37097;37098;37099 37098 4 LSESQLSFR YGSDRRLAELSDYRRLSESQLSFRRSPTKS LSDYRRLSESQLSFRRSPTKSSLDYRRLPD R L S F R R 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 3 0 0 0 0 0 0 9 0 1065.5455 A0A0S2Z4Z0;Q96PK6;B4DNG4 A0A0S2Z4Z0 617 625 RBM14 RNA-binding protein 14 yes no 2 1.656E-06 136.27 2 2 1.1829 1.7621 45.774 4 Linear 1.5173 1.7167 1.9329 2 0 Median 0.92371 0.77757 3.1198 2 0 Median 131530000 53909000 77626000 120950000 48810000 72135000 10590000 5098600 5491200 8924 571 9132 23670;23671;23672;23673 37100;37101;37102;37103 37101 4 LSESVLSPPCFVR RSEATFQFTVERFSRLSESVLSPPCFVRNL SRLSESVLSPPCFVRNLPWKIMVMPRFYPD R L S V R N 0 1 0 0 1 0 1 0 0 0 2 0 0 1 2 3 0 0 0 2 0 0 13 0 1489.7599 Q93009;B7ZAX6;Q6U8A4;F5H2X1;B7Z842;H3BUV0;H3BTM1;H3BRA2;H3BQD1 Q93009 81 93 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0047294 59.426 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5143400 0 5143400 5143400 0 5143400 0 0 0 8925 1954 9133 23674;23675 37104;37105 37105 2 LSEVLQAVTDHDIPQQLVER HCTNAYMLVYIRESKLSEVLQAVTDHDIPQ QAVTDHDIPQQLVERLQEEKRIEAQKRKER K L S E R L 1 1 0 2 0 3 2 0 1 1 3 0 0 0 1 1 1 0 0 3 0 0 20 0 2289.1965 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5 Q93009 524 543 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 1.1361E-18 123.43 2 2 0.75151 0.69813 23.261 4 Median 0.67034 0.73275 28.333 2 0 Median 0.81187 0.67037 27.227 2 0 Median 128940000 79708000 49235000 90858000 59774000 31084000 38085000 19934000 18151000 8926 1954 9134 23676;23677;23678;23679 37106;37107;37108;37109;37110;37111 37106 6 LSEVTFRPLFFK TENCIIDCLVAMVVKLSEVTFRPLFFKLFD VVKLSEVTFRPLFFKLFDWAKTEDAPKDRL K L S F K L 0 1 0 0 0 0 1 0 0 0 2 1 0 3 1 1 1 0 0 1 0 0 12 1 1482.8235 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1907 1918 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2;3 0.00023724 100.88 4 1 0.99081 1.1292 11.253 5 Median 0.98148 1.1359 9.6553 4 0 Median 1.0904 0.92514 NaN 1 0 Median 144030000 74761000 69264000 124030000 64955000 59078000 19993000 9806500 10186000 8927 897 9135 23680;23681;23682;23683;23684 37112;37113;37114;37115;37116;37117;37118 37114 7 LSFAVPFR DEMMKSYVAWDREKRLSFAVPFREMKPVIF AWDREKRLSFAVPFREMKPVIFLDVFLPRV R L S F R E 1 1 0 0 0 0 0 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 8 0 935.52289 P78527;B4DL41 P78527 892 899 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0092293 84.244 2 2 0.70963 0.76712 52.017 4 Linear 0.64907 0.68072 9.5051 2 0 Median 0.32927 0.2782 4.516 2 0 Median 57760000 35472000 22288000 45210000 26344000 18866000 12550000 9128100 3422100 8928 1665 9136 23685;23686;23687;23688 37119;37120;37121;37122;37123;37124;37125 37119 7 LSFFFDFR GYSMVGCQRAMMANRLSFFFDFRGPSIALD RAMMANRLSFFFDFRGPSIALDTACSSSLM R L S F R G 0 1 0 1 0 0 0 0 0 0 1 0 0 4 0 1 0 0 0 0 0 0 8 0 1077.5284 A0A0U1RQF0;P49327 A0A0U1RQF0 144 151 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.027337 53.968 1 1.6216 1.7592 NaN 1 Median 1.6216 1.7592 NaN 1 0 Median NaN NaN NaN 0 0 Median 2561300 1046800 1514400 2561300 1046800 1514400 0 0 0 8929 587 9137 23689 37126 37126 1 LSFHQTQVSQR LTKDVLLDVAYAYGKLSFHQTQVSQRLATD AYGKLSFHQTQVSQRLATDLLSLMPSLTSG K L S Q R L 0 1 0 0 0 3 0 0 1 0 1 0 0 1 0 2 1 0 0 1 0 0 11 0 1329.6789 D3DVL7;B4DU42;Q969Z0;C9IZN7;B3KRS4;B3KMT3 D3DVL7 251 261 TBRG4 Protein TBRG4 yes no 2 0.0048066 65.695 2 1.5006 1.5744 NaN 1 Median 1.5006 1.5744 NaN 1 0 Median NaN NaN NaN 0 0 Median 17132000 5383600 11748000 17132000 5383600 11748000 0 0 0 8930 1036 9138 23690;23691 37127;37128;37129 37129 3 LSFLPR EERLAWEQQEPGERKLSFLPRKFPSLRAVP EQQEPGERKLSFLPRKFPSLRAVPAYGRFI K L S P R K 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 6 0 731.43301 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 340 345 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.034267 113.07 1 0.85864 0.97689 NaN 1 Median 0.85864 0.97689 NaN 1 0 Median NaN NaN NaN 0 0 Median 125450000 67114000 58338000 125450000 67114000 58338000 0 0 0 8931 1726 9139 23692 37130 37130 1 LSFLYLITGNLEK QIVEMCYQRTKNFDKLSFLYLITGNLEKLR DKLSFLYLITGNLEKLRKMMKIAEIRKDMS K L S E K L 0 0 1 0 0 0 1 1 0 1 4 1 0 1 0 1 1 0 1 0 0 0 13 0 1509.8443 P53621 P53621 703 715 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 1.1302E-60 190.57 2 1.565 1.594 NaN 1 Median 1.565 1.594 NaN 1 0 Median NaN NaN NaN 0 0 Median 48856000 9009200 39846000 48856000 9009200 39846000 0 0 0 8932 1607 9140 23693;23694 37131;37132;37133 37131 3 LSFSGLR LITIVEEVETLRQERLSFSGLRAPVPASEL VETLRQERLSFSGLRAPVPASELLASGVLS R L S L R A 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 7 0 778.43374 Q15149;D3DWL0 Q15149 3440 3446 PLEC;PLEC1 Plectin yes no 2 0.037563 60.788 1 2.1238 2.3388 NaN 1 Median 2.1238 2.3388 NaN 1 0 Median NaN NaN NaN 0 0 Median 41071000 14438000 26632000 41071000 14438000 26632000 0 0 0 8933 1754 9141 23695 37134 37134 1 LSFSHIEK KHAKEGNGFQEETWRLSFSHIEKEILNNHG FQEETWRLSFSHIEKEILNNHGKSKTCCEN R L S E K E 0 0 0 0 0 0 1 0 1 1 1 1 0 1 0 2 0 0 0 0 0 0 8 0 959.50763 Q8N884 Q8N884 377 384 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.012318 67.897 1 1 1.4546 1.3943 19.44 2 Median 1.3764 1.5997 NaN 1 0 Median 1.5372 1.2152 NaN 1 0 Median 250900000 100250000 150650000 232690000 92909000 139780000 18204000 7337700 10866000 8934 1914 9142 23696;23697 37135;37136 37135 2 LSFYETGEIPR TSVFGEKLREQVEERLSFYETGEIPRKNLD VEERLSFYETGEIPRKNLDVMKEAMVQAEE R L S P R K 0 1 0 0 0 0 2 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 11 0 1310.6507 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 405 415 NOP56 Nucleolar protein 56 yes no 2 7.8316E-06 109.66 2 2 0.80892 0.82708 6.8111 4 Median 0.73197 0.85642 3.0914 2 0 Median 0.89998 0.77986 6.4754 2 0 Median 645070000 361260000 283810000 540820000 308560000 232260000 104250000 52707000 51546000 8935 785 9143 23698;23699;23700;23701 37137;37138;37139;37140;37141;37142;37143;37144;37145;37146;37147 37142 11 LSFYETGEIPRK TSVFGEKLREQVEERLSFYETGEIPRKNLD EERLSFYETGEIPRKNLDVMKEAMVQAEEA R L S R K N 0 1 0 0 0 0 2 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 12 1 1438.7456 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 405 416 NOP56 Nucleolar protein 56 yes no 2;3 4.5969E-05 68.676 3 4 0.95511 0.88513 5.9061 7 Median 0.76604 0.92188 6.5657 3 0 Median 1.0219 0.86759 1.9534 4 0 Median 310450000 157570000 152880000 210770000 109510000 101260000 99677000 48060000 51617000 8936 785 9144 23702;23703;23704;23705;23706;23707;23708 37148;37149;37150;37151;37152;37153;37154;37155;37156 37154 9 LSGEAFDINK SCGGEGIVLQHNPWKLSGEAFDINKLIRDT HNPWKLSGEAFDINKLIRDTNSIKYKLPVH K L S N K L 1 0 1 1 0 0 1 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1092.5451 B7ZLC9;Q8TEQ6;Q58EZ8 B7ZLC9 514 523 GEMIN5 Gem-associated protein 5 yes no 2 0.010458 53.327 1 1.7661 1.7401 NaN 1 Median 1.7661 1.7401 NaN 1 0 Median NaN NaN NaN 0 0 Median 9168500 3456200 5712300 9168500 3456200 5712300 0 0 0 8937 1114 9145 23709 37157 37157 1 LSGGLGAGSCR GSSGLGGGSSRTSCRLSGGLGAGSCRLGSA TSCRLSGGLGAGSCRLGSAGGLGSTLGGSS R L S C R L 1 1 0 0 1 0 0 4 0 0 2 0 0 0 0 2 0 0 0 0 0 0 11 0 1033.4975 CON__Q04695;Q04695;K7EPJ9;B4E2P9 CON__Q04695 31 41 KRT17 Keratin, type I cytoskeletal 17 yes no 2 2.8682E-05 101.97 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27310000 27310000 0 25814000 25814000 0 1496000 1496000 0 + 8938 1168 9146 23710;23711;23712 37158;37159;37160 37158 3 LSGLEQPQGALQTR TDELWASLEAAAKRKLSGLEQPQGALQTRR KLSGLEQPQGALQTRRRKKKRPGSTSP___ K L S T R R 1 1 0 0 0 3 1 2 0 0 3 0 0 0 1 1 1 0 0 0 0 0 14 0 1496.7947 Q6RFH5;E9PS41;H0YFP2 Q6RFH5 360 373 WDR74 WD repeat-containing protein 74 yes no 2 1.7779E-57 196.24 2 2 1.148 1.1348 4.4238 4 Median 1.0005 1.1348 2.1517 2 0 Median 1.3291 1.1266 7.318 2 0 Median 221220000 109310000 111910000 176290000 88960000 87331000 44928000 20354000 24574000 8939 1859 9147 23713;23714;23715;23716 37161;37162;37163;37164;37165;37166;37167;37168 37161 8 LSGLNAFDIAEELVK QKAVDQPRQLFWEKKLSGLNAFDIAEELVK LSGLNAFDIAEELVKTMDLPKGLQGVGPGC K L S V K T 2 0 1 1 0 0 2 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 15 0 1617.8614 O95983;B3KMA8;K7EIE8;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983 143 157 MBD3 Methyl-CpG-binding domain protein 3 yes no 2 2.0329E-38 166.62 2 0.74292 0.81433 1.4856 2 Median 0.74292 0.81433 1.4856 2 0 Median NaN NaN NaN 0 0 Median 85460000 50037000 35423000 85460000 50037000 35423000 0 0 0 8940 1432 9148 23717;23718 37169;37170;37171;37172;37173 37173 5 LSGSNPYTTVTPQIINSK IHKEAQRIAESNHIKLSGSNPYTTVTPQII SNPYTTVTPQIINSKWEKVQQLVPKRDHAL K L S S K W 0 0 2 0 0 1 0 1 0 2 1 1 0 0 2 3 3 0 1 1 0 0 18 0 1919 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144 A0A0S2Z3G9 605 622 ACTN4 Alpha-actinin-4 yes no 2 0.00046433 57.328 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8941 548 9149 23719 37174 37174 1 LSGTLNETLDK L S D K 0 0 1 1 0 0 1 1 0 0 3 1 0 0 0 1 2 0 0 0 0 0 11 0 1189.619 REV__P46013 yes yes 2 0.0051612 65.246 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12576000000 12576000000 0 10970000000 10970000000 0 1606500000 1606500000 0 + 8942 2178 9150 23720;23721;23722;23723 37175;37176;37177;37178;37179;37180;37181;37182;37183;37184;37185;37186;37187;37188;37189 37184 15 LSGVEEELQR RKYKGDSTIRELKAKLSGVEEELQRTKQEV ELKAKLSGVEEELQRTKQEVLSLRRENSTL K L S Q R T 0 1 0 0 0 1 3 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1158.5881 Q6UVJ0;Q495U0;B4DYM7 Q6UVJ0 282 291 SASS6 Spindle assembly abnormal protein 6 homolog yes no 2 0.0087219 64.654 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2564400 0 2564400 2564400 0 2564400 0 0 0 8943 1862 9151 23724 37190 37190 1 LSHETVTIELK ______________________________ FLMKLSHETVTIELKNGTQVHGTITGVDVS K L S L K N 0 0 0 0 0 0 2 0 1 1 2 1 0 0 0 1 2 0 0 1 0 0 11 0 1268.6976 P62314;J3QLR7 P62314 10 20 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes no 2;3 2.4599E-13 175.93 2 3 0.85569 0.79981 22.294 4 Median 0.85569 0.89679 1.0638 2 0 Median 0.81105 0.63545 17.411 2 0 Median 48118000 25113000 23004000 31561000 16378000 15183000 16557000 8735100 7821800 8944 1644 9152 23725;23726;23727;23728;23729 37191;37192;37193;37194;37195;37196;37197;37198 37192 8 LSHPLLEQLLPALR RCSVFKCLPMILDNKLSHPLLEQLLPALRY KLSHPLLEQLLPALRYSLHDNSEKVRVAFV K L S L R Y 1 1 0 0 0 1 1 0 1 0 6 0 0 0 2 1 0 0 0 0 0 0 14 0 1598.9508 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 452 465 NCAPG2 Condensin-2 complex subunit G2 yes no 2;3 6.9965E-07 92.856 3 2 0.94809 1.0934 26.121 5 Median 0.89228 0.98619 11.451 3 0 Median 1.7489 1.4977 17.243 2 0 Median 198790000 88418000 110380000 118850000 60646000 58202000 79946000 27772000 52174000 8945 1887 9153 23730;23731;23732;23733;23734 37199;37200;37201;37202;37203;37204;37205;37206;37207;37208 37201 10 LSHYLQK PSPPYFGLLLASVGRLSHYLQKGCRLSPRD LLLASVGRLSHYLQKGCRLSPRDTYSDRSG R L S Q K G 0 0 0 0 0 1 0 0 1 0 2 1 0 0 0 1 0 0 1 0 0 0 7 0 887.4865 P17812;B4E1E0 P17812 551 557 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.014183 100.74 1 1.8876 2.0913 NaN 1 Median 1.8876 2.0913 NaN 1 0 Median NaN NaN NaN 0 0 Median 46689000 15722000 30967000 46689000 15722000 30967000 0 0 0 8946 1494 9154 23735 37209 37209 1 LSIFDANESGFESYEALPQHK PPDAVDEPQMLTNEKLSIFDANESGFESYE NESGFESYEALPQHKLTCFSVYCKHGHLCP K L S H K L 2 0 1 1 0 1 3 1 1 1 2 1 0 2 1 3 0 0 1 0 0 0 21 0 2381.1176 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 448 468 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 3 9.7425E-08 60.602 1 1 0.77799 0.72529 11.226 2 Median 0.63421 0.66994 NaN 1 0 Median 0.95435 0.78522 NaN 1 0 Median 33903000 19284000 14619000 23652000 14041000 9611100 10250000 5242300 5008000 8947 222 9155 23736;23737 37210;37211 37210 2 LSILYPATTGR TARVVFVFGPDKKLKLSILYPATTGRNFDE KKLKLSILYPATTGRNFDEILRVVISLQLT K L S G R N 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 2 0 1 0 0 0 11 0 1190.6659 V9HWC7;P30041 V9HWC7 145 155 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 5.8219E-05 98.943 1 1 4.0458 4.4995 NaN 1 Median 4.0458 4.4995 NaN 1 0 Median NaN NaN NaN 0 0 Median 43358000 8744600 34613000 43358000 8744600 34613000 0 0 0 8948 1527 9156 23738;23739 37212;37213 37212 2 LSINKPTSER GLYTPQTKEKPTFGKLSINKPTSERKVSLF PTFGKLSINKPTSERKVSLFGKRTSGHGSR K L S E R K 0 1 1 0 0 0 1 0 0 1 1 1 0 0 1 2 1 0 0 0 0 0 10 1 1143.6248 A8K031;O14777;Q05DQ6;I3L4G3 A8K031 43 52 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2;3 6.0254E-05 96.342 3 0.8688 0.97285 1.0389 3 Median 0.8688 0.97285 1.0389 3 0 Median NaN NaN NaN 0 0 Median 61659000 31629000 30030000 61659000 31629000 30030000 0 0 0 8949 696 9157 23740;23741;23742 37214;37215;37216;37217 37215 4 LSINTQLLAR ALRLVAKPGDKLYCRLSINTQLLARVDHLM KLYCRLSINTQLLARVDHLMKVGKNNFRPP R L S A R V 1 1 1 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 0 0 0 0 10 0 1127.6663 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2 A8K9K8 175 184 DIMT1 Probable dimethyladenosine transferase yes no 2 1.3272E-06 111.74 3 2 0.97676 0.93553 20.986 4 Median 0.75408 0.79669 9.9271 2 0 Median 1.3092 1.1092 11.291 2 0 Median 75896000 38419000 37476000 65281000 34176000 31105000 10615000 4243300 6371800 8950 786 9158 23743;23744;23745;23746;23747 37218;37219;37220;37221;37222;37223;37224;37225;37226 37219 9 LSIPTYGLQCTR PIEGSTTVFHSLASRLSIPTYGLQCTRAAP ASRLSIPTYGLQCTRAAPLDSIHSLAAYYI R L S T R A 0 1 0 0 1 1 0 1 0 1 2 0 0 0 1 1 2 0 1 0 0 0 12 0 1407.718 A0A0U1RQF0;P49327;J3KTF0 A0A0U1RQF0 2262 2273 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.024765 48.741 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7550600 0 7550600 7550600 0 7550600 0 0 0 8951 587 9159 23748;23749 37227;37228 37227 2 LSIQDNNVDLILATPPFSR AVLSPQRLVLETLSKLSIQDNNVDLILATP DNNVDLILATPPFSRLEKLYSTMVRFLSDR K L S S R L 1 1 2 2 0 1 0 0 0 2 3 0 0 1 2 2 1 0 0 1 0 0 19 0 2112.1215 A0A0S2Q0B1;O14497;H0Y488;A0A1B0GTU5;Q96T01;Q96SM7;Q8NC65;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5;A4FU79;A0A1B0GTI6;Q96SY8;Q9NWF5;B4DYC0 A0A0S2Q0B1 2125 2143 ARID1A;ARID1B AT-rich interactive domain-containing protein 1A;AT-rich interactive domain-containing protein 1B yes no 2 0.00012706 47.774 2 0.94006 0.96168 0.11907 2 Median 0.94006 0.96168 0.11907 2 0 Median NaN NaN NaN 0 0 Median 21651000 10500000 11151000 21651000 10500000 11151000 0 0 0 8952 544 9160 23750;23751 37229;37230;37231;37232 37231 4 LSISETYDLK LEKKYASSANLHLPKLSISETYDLKSVLGD LHLPKLSISETYDLKSVLGDVGITEVFSDR K L S L K S 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 2 1 0 1 0 0 0 10 0 1167.6023 CON__P34955 CON__P34955 313 322 yes yes 2 0.003852 86.136 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6415000 6415000 0 6415000 6415000 0 0 0 0 + 8953 1164 9161 23752 37233 37233 1 LSIVPVR KEVATAIRGAIILAKLSIVPVRRGYWGNKI RGAIILAKLSIVPVRRGYWGNKIGKPHTVP K L S V R R 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 7 0 782.50142 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PMM9;I3L404;E9PPT0;Q8NI61;E9PM36;A4D0Y7 P15880 160 166 RPS2;rps2;OK/KNS-cl.7;LOC392781 40S ribosomal protein S2 yes no 2 0.026656 87.582 2 2 0.92524 0.91704 32.039 4 Median 1.0394 1.2156 1.3098 2 0 Median 0.81198 0.69801 0.046983 2 0 Median 601550000 306740000 294810000 543770000 275740000 268030000 57783000 31005000 26779000 8954 1485 9162 23753;23754;23755;23756 37234;37235;37236;37237;37238;37239 37235 6 LSIVPVRR KEVATAIRGAIILAKLSIVPVRRGYWGNKI GAIILAKLSIVPVRRGYWGNKIGKPHTVPC K L S R R G 0 2 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 8 1 938.60253 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PMM9;I3L404;E9PPT0;Q8NI61;E9PM36;A4D0Y7 P15880 160 167 RPS2;rps2;OK/KNS-cl.7;LOC392781 40S ribosomal protein S2 yes no 2;3 0.0036504 97.071 3 2 0.94564 1.0904 28.717 5 Median 1.0414 1.2084 6.4823 3 0 Plateau 0.79367 0.69401 9.4439 2 0 Median 495580000 250110000 245470000 452400000 227300000 225100000 43182000 22812000 20370000 8955 1485 9163 23757;23758;23759;23760;23761 37240;37241;37242;37243;37244;37245;37246;37247;37248;37249 37243 10 LSIYNALK ANVIAGVWLEEAGQKLSIYNALKKDLLPSD LEEAGQKLSIYNALKKDLLPSDMAVALLEA K L S L K K 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 8 0 920.53312 Q15149;D3DWL0 Q15149 3175 3182 PLEC;PLEC1 Plectin yes no 2 0.0071364 84.244 1 1.8073 2.0128 NaN 1 Median 1.8073 2.0128 NaN 1 0 Median NaN NaN NaN 0 0 Median 51477000 19805000 31672000 51477000 19805000 31672000 0 0 0 8956 1754 9164 23762 37250;37251 37250 2 LSLAEIYEQEYIK YEYKKRLTLDHEKSKLSLAEIYEQEYIKLN SKLSLAEIYEQEYIKLNQQKTAEEENPEHV K L S I K L 1 0 0 0 0 1 3 0 0 2 2 1 0 0 0 1 0 0 2 0 0 0 13 0 1597.8239 B3KPV5;O00566 B3KPV5 467 479 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 7.7551E-06 127.83 1 0.62918 0.68099 NaN 1 Median 0.62918 0.68099 NaN 1 0 Median NaN NaN NaN 0 0 Median 38704000 19911000 18794000 38704000 19911000 18794000 0 0 0 8957 924 9165 23763 37252 37252 1 LSLDDLLQR ETMLPLLLTAVSEGRLSLDDLLQRLHHNPR AVSEGRLSLDDLLQRLHHNPRRIFHLPPQE R L S Q R L 0 1 0 2 0 1 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 9 0 1071.5924 Q53SY7;F8VPD4;P27708;H7BZB3 Q53SY7 1649 1657 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.001489 84.743 2 0.9209 0.92904 10.118 2 Median 0.9209 0.92904 10.118 2 0 Median NaN NaN NaN 0 0 Median 34456000 16288000 18168000 34456000 16288000 18168000 0 0 0 8958 1259 9166 23764;23765 37253;37254;37255 37255 3 LSLDGQNIYNACCTLR ALLQYADPVSAQHAKLSLDGQNIYNACCTL SLDGQNIYNACCTLRIDFSKLTSLNVKYNN K L S L R I 1 1 2 1 2 1 0 1 0 1 3 0 0 0 0 1 1 0 1 0 0 0 16 0 1896.8822 A6NLN1;A0A0U1RRM4;P26599;K7EK45;A0A087WU68;Q59H49 A6NLN1 209 224 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 0.00028077 56.122 2 1 1.6388 1.4912 42.136 2 Median 2.0284 2.0088 NaN 1 0 Median 1.324 1.107 NaN 1 0 Median 26930000 7267500 19662000 23315000 5622700 17692000 3615200 1644800 1970300 8959 592 9167 23766;23767;23768 37256;37257;37258;37259;37260 37257 5 LSLDVEQAPSGQHSQAQLSGQQQR WEEQLARLLQEAPGKLSLDVEQAPSGQHSQ SGQHSQAQLSGQQQRLLAFFKCCLLTDQLP K L S Q R L 2 1 0 1 0 7 1 2 1 0 3 0 0 0 1 4 0 0 0 1 0 0 24 0 2591.2688 Q59E91;Q4G0F4;O00411;B4DZE5;K7EMH3 Q59E91 44 67 POLRMT DNA-directed RNA polymerase;DNA-directed RNA polymerase, mitochondrial yes no 3 1.627E-09 64.152 3 1 1.7428 1.4768 NaN 1 Median NaN NaN NaN 0 0 Median 1.7428 1.4768 NaN 1 0 Median 14977000 6215300 8761900 11956000 5018800 6937700 3020800 1196500 1824200 8960 1363 9168 23769;23770;23771;23772 37261;37262;37263;37264;37265;37266 37263 6 LSLEGDHSTPPSAYGSVK ______________________________ EGDHSTPPSAYGSVKAYTNFDAERDALNIE K L S V K A 1 0 0 1 0 0 1 2 1 0 2 1 0 0 2 4 1 0 1 1 0 0 18 0 1843.8952 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YKS4;B4DNH8;H0YMM1;A6NMY6;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 V9HW65 11 28 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 3 0.00098429 35.133 2 1.447 1.4706 1.7501 2 Median 1.447 1.4706 1.7501 2 0 Median NaN NaN NaN 0 0 Median 44354000 18209000 26145000 44354000 18209000 26145000 0 0 0 8961 193 9169 23773;23774 37267;37268 37267 2 LSLELFGR MGMVISHDMLLGRWRLSLELFGRVFMEDVG MLLGRWRLSLELFGRVFMEDVGAEPGSILT R L S G R V 0 1 0 0 0 0 1 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 8 0 933.52837 E7EMW7;O95071;E5RFK7 E7EMW7 2185 2192 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.010115 76.774 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3162200 3162200 0 3162200 3162200 0 0 0 0 8962 1218 9170 23775;23776;23777;23778 37269;37270;37271;37272 37272 4 LSLGTYASLHGR VFHISCFRCSYCNNKLSLGTYASLHGRIYC NNKLSLGTYASLHGRIYCKPHFNQLFKSKG K L S G R I 1 1 0 0 0 0 0 2 1 0 3 0 0 0 0 2 1 0 1 0 0 0 12 0 1273.6779 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 263 274 LIMA1 LIM domain and actin-binding protein 1 yes no 3 0.0014511 43.991 1 2.1244 2.4637 NaN 1 Median 2.1244 2.4637 NaN 1 0 Median NaN NaN NaN 0 0 Median 58271000 18958000 39313000 58271000 18958000 39313000 0 0 0 8963 1010 9171 23779 37273 37273 1 LSLHLQDQDSVK RRNRTAFEEVEEDLRLSLHLQDQDSVKDAV DLRLSLHLQDQDSVKDAVPDQQLDFKQLLA R L S V K D 0 0 0 2 0 2 0 0 1 0 3 1 0 0 0 2 0 0 0 1 0 0 12 0 1381.7201 Q6P158;Q59G60;H7C109;B4DKW2 Q6P158 779 790 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 0.039607 22.493 1 0.86069 0.84556 NaN 1 Median 0.86069 0.84556 NaN 1 0 Median NaN NaN NaN 0 0 Median 20225000 11291000 8933100 20225000 11291000 8933100 0 0 0 8964 1850 9172 23780 37274 37274 1 LSLINFR DQKILLLLRAYEQNKLSLINFRVLLWGPAA LRAYEQNKLSLINFRVLLWGPAAVEHHKTC K L S F R V 0 1 1 0 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 7 0 861.50724 O60287 O60287 1556 1562 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.027538 75.311 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2363000 2363000 0 2363000 2363000 0 0 0 0 8965 1392 9173 23781;23782 37275;37276 37276 2 LSLLEEYGCCK AVTYIDEKRDFRTYRLSLLEEYGCCKELAS RTYRLSLLEEYGCCKELASRLRYARTMVDK R L S C K E 0 0 0 0 2 0 2 1 0 0 3 1 0 0 0 1 0 0 1 0 0 0 11 0 1370.621 P53350;B2R841;B4E083;Q59GD0;D3DWF3 P53350 564 574 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 1.1883E-16 152.81 2 1.1428 1.1626 7.3222 2 Median 1.1428 1.1626 7.3222 2 0 Median NaN NaN NaN 0 0 Median 60073000 26925000 33147000 60073000 26925000 33147000 0 0 0 8966 1604 9174 23783;23784 37277;37278 37278 2 LSLLLNDISR RELEMIGFIENNVSKLSLLLNDISRKSEGL NNVSKLSLLLNDISRKSEGLSGRVLRKLPF K L S S R K 0 1 1 1 0 0 0 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 10 0 1142.6659 Q15645 Q15645 369 378 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 1.5031E-06 111.61 2 2 1.4096 1.3708 37.625 4 Median 1.6686 1.8711 2.2472 2 0 Median 1.1651 0.97823 5.9515 2 0 Median 118970000 45251000 73724000 105000000 39009000 65992000 13974000 6242000 7731700 8967 1763 9175 23785;23786;23787;23788 37279;37280;37281;37282;37283;37284 37281 6 LSLLNGGLQEEELSTSLK IWLDSKQIRQEEMKKLSLLNGGLQEEELST LNGGLQEEELSTSLKRSVYIESRIGTSTSF K L S L K R 0 0 1 0 0 1 3 2 0 0 6 1 0 0 0 3 1 0 0 0 0 0 18 0 1930.0259 O95235 O95235 225 242 KIF20A Kinesin-like protein KIF20A yes yes 2 2.3402E-08 97.631 1 2 1.2799 1.0282 37.246 3 Median 0.65256 0.66332 NaN 1 0 Median 1.4832 1.1961 21.391 2 0 Median 70918000 36973000 33945000 30186000 18338000 11848000 40732000 18635000 22098000 8968 1421 9176 23789;23790;23791 37285;37286;37287;37288;37289;37290 37288 6 LSLLNGGLQEEELSTSLKR IWLDSKQIRQEEMKKLSLLNGGLQEEELST NGGLQEEELSTSLKRSVYIESRIGTSTSFD K L S K R S 0 1 1 0 0 1 3 2 0 0 6 1 0 0 0 3 1 0 0 0 0 0 19 1 2086.127 O95235 O95235 225 243 KIF20A Kinesin-like protein KIF20A yes yes 3 0.039076 13.037 2 1.7244 1.4391 18.01 2 Median NaN NaN NaN 0 0 Median 1.7244 1.4391 18.01 2 0 Median 11048000 3305800 7741900 0 0 0 11048000 3305800 7741900 8969 1421 9177 23792;23793 37291;37292;37293 37291 3 LSLLSSTSK GVVNPNEVFCSVPGRLSLLSSTSKYKVTVA CSVPGRLSLLSSTSKYKVTVAEVQRRLSPP R L S S K Y 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 4 1 0 0 0 0 0 9 0 934.53351 Q96SH1;P05549;A8K557;Q6VUC0;Q92481;C9JXZ2;H7C5E5;C1K3N0;B2RAN6;Q92754;Q7Z6R9 Q96SH1 220 228 TFAP2A;TFAP2E;TFAP2B;TFAP2C;TFAP2D Transcription factor AP-2-alpha;Transcription factor AP-2-epsilon;Transcription factor AP-2-beta;Transcription factor AP-2 gamma;Transcription factor AP-2-delta no no 2 0.035569 43.808 1 1.5128 1.1873 NaN 1 Median NaN NaN NaN 0 0 Median 1.5128 1.1873 NaN 1 0 Median 2057500 972200 1085300 0 0 0 2057500 972200 1085300 8970 1448;1881 9178 23794 37294 37294 1 LSLMYAR DLLRLRRRFMRDQEKLSLMYARKGVAEQKR RFMRDQEKLSLMYARKGVAEQKREKEIKSE K L S A R K 1 1 0 0 0 0 0 0 0 0 2 0 1 0 0 1 0 0 1 0 0 0 7 0 852.45276 P78527 P78527 2739 2745 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.016575 62.714 2 1.0519 1.1182 6.6323 2 Median 1.0519 1.1182 6.6323 2 0 Median NaN NaN NaN 0 0 Median 53475000 25486000 27989000 53475000 25486000 27989000 0 0 0 8971 1665 9179 23795;23796 37295;37296 37296 1455 2 LSLNIDPDAK PDTKAYGDRIERMLRLSLNIDPDAKVEEEP ERMLRLSLNIDPDAKVEEEPEEEPEETAED R L S A K V 1 0 1 2 0 0 0 0 0 1 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1084.5764 Q5CAQ5;V9HWP2;P14625;B4DU71;H0YIV0;B4DHT9 Q5CAQ5 745 754 TRA1;HEL-S-125m;HSP90B1 Endoplasmin yes no 2 0.022046 46.001 1 2.1547 2.1581 NaN 1 Median 2.1547 2.1581 NaN 1 0 Median NaN NaN NaN 0 0 Median 7648000 3016700 4631300 7648000 3016700 4631300 0 0 0 8972 1482 9180 23797 37297 37297 1 LSLQEQDAAIVK ARADHEQQIKDLEQKLSLQEQDAAIVKNMK EQKLSLQEQDAAIVKNMKSELVRLPRLERE K L S V K N 2 0 0 1 0 2 1 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1313.7191 A4D218;Q9Y6D9;C9JTA2;C9K086 A4D218 232 243 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 2 0.0055139 75.197 1 1.1247 1.1424 NaN 1 Median 1.1247 1.1424 NaN 1 0 Median NaN NaN NaN 0 0 Median 9131000 4516600 4614400 9131000 4516600 4614400 0 0 0 8973 668 9181 23798 37298 37298 0 LSLQESESK TKSSEQSRSVNIASKLSLQESESKRRCRKR VNIASKLSLQESESKRRCRKRQSPEPSPVT K L S S K R 0 0 0 0 0 1 2 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 9 0 1019.5135 D3DS96;Q9NRL2;Q59G54;B3KND8 D3DS96 1396 1404 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.016688 61.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10773000 0 10773000 10773000 0 10773000 0 0 0 8974 1187 9182 23799 37299 37299 1 LSLSNAISTALPLTQLR VTGLKLQGATCNNNKLSLSNAISTALPLTQ LSNAISTALPLTQLRWVKQTNTEKKASVVT K L S L R W 2 1 1 0 0 1 0 0 0 1 5 0 0 0 1 3 2 0 0 0 0 0 17 0 1797.036 Q14204 Q14204 4575 4591 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 1.672E-05 84.365 2 2.5635 2.5854 1.6188 2 Median 2.5635 2.5854 1.6188 2 0 Median NaN NaN NaN 0 0 Median 29595000 8653500 20941000 29595000 8653500 20941000 0 0 0 8975 1729 9183 23800;23801 37300;37301;37302;37303 37300 4 LSLVAVSNSVPQDICCMAADGR TTCVGKSFHTYDVQKLSLVAVSNSVPQDIC NSVPQDICCMAADGRLVFAAYGNVFSAFAR K L S G R L 3 1 1 2 2 1 0 1 0 1 2 0 1 0 1 3 0 0 0 3 0 0 22 0 2362.1079 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 58 79 WDR36 WD repeat-containing protein 36 yes no 2 6.8141E-08 61.212 2 1.1591 1.1879 3.4843 2 Median 1.1591 1.1879 3.4843 2 0 Median NaN NaN NaN 0 0 Median 29019000 12480000 16539000 29019000 12480000 16539000 0 0 0 8976 486 9184 23802;23803 37304;37305 37304 333 2 LSMSQLNEK NCNLICGDEYGPETRLSMSQLNEKETPFEL YGPETRLSMSQLNEKETPFELIEALLKYIE R L S E K E 0 0 1 0 0 1 1 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 9 0 1048.5223 Q08211 Q08211 622 630 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00096257 78.264 2 2 0.96822 0.87359 49.911 4 Median 0.53637 0.55213 48.955 2 0 Median 1.4101 1.1029 17.025 2 0 Median 29932000 16250000 13682000 23712000 13568000 10144000 6219900 2681600 3538300 8977 1691 9185;9186 23804;23805;23806;23807 37306;37307;37308;37309;37310 37306 1516 5 LSNIFVIGK VVHVKDANGNSFATRLSNIFVIGKGNKPWI NSFATRLSNIFVIGKGNKPWISLPRGKGIR R L S G K G 0 0 1 0 0 0 0 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 9 0 989.59097 B2R491;P62701;Q96IR1;Q53HV1 B2R491 222 230 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 0.00031179 102.51 1 2 1.2086 1.0243 31.004 3 Median 1.4696 1.7315 NaN 1 0 Median 1.1891 1.0124 1.6531 2 0 Median 701590000 383150000 318440000 568090000 320280000 247820000 133490000 62870000 70623000 8978 824 9187 23808;23809;23810 37311;37312;37313;37314 37311 4 LSNLPTVDPIAVCHELYNTIR HHSVSTPGPSRKRRRLSNLPTVDPIAVCHE VDPIAVCHELYNTIRDYKDEQGRLLCELFI R L S I R D 1 1 2 1 1 0 1 0 1 2 3 0 0 0 2 1 2 0 1 2 0 0 21 0 2424.2471 Q86U86;E7EVG2;C9J053;C9JQF1;C9JPI5;C9JCJ2 Q86U86 38 58 PBRM1 Protein polybromo-1 yes no 3 0.00043954 34.221 1 1.5857 1.4013 NaN 1 Median NaN NaN NaN 0 0 Median 1.5857 1.4013 NaN 1 0 Median 3692900 1997300 1695600 0 0 0 3692900 1997300 1695600 8979 1883 9188 23811 37315 37315 1 LSNLVETPK EKVLNVISLEFSDTRLSNLVETPKIVRKLS EFSDTRLSNLVETPKIVRKLSWVENLWPEE R L S P K I 0 0 1 0 0 0 1 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 9 0 999.56006 H0Y3N9;Q9UPP1;A0A024R9Y4 H0Y3N9 104 112 PHF8 Histone lysine demethylase PHF8 yes no 2 0.00091622 98.233 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8980 1279 9189 23812;23813 37316;37317 37317 2 LSNSTAVYFQDYQTSK FGLISSTAYAQEIQKLSNSTAVYFQDYQTS SNSTAVYFQDYQTSKSNVSSFVDEHEPSMV K L S S K S 1 0 1 1 0 2 0 0 0 0 1 1 0 1 0 3 2 0 2 1 0 0 16 0 1850.8687 D9IVD5;A0A024R241;Q16649 D9IVD5 141 156 NFIL3 Nuclear factor interleukin-3-regulated protein yes no 2 0.062681 22.055 1 1.1609 0.96268 NaN 1 Median NaN NaN NaN 0 0 Median 1.1609 0.96268 NaN 1 0 Median 1777800 779490 998260 0 0 0 1777800 779490 998260 8981 103 9190 23814 37318 37318 1 LSNVNLQEK GRMSSKPINFSVILKLSNVNLQEKAYRDGL FSVILKLSNVNLQEKAYRDGLVEQLYDLTL K L S E K A 0 0 2 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1043.5611 Q9Y3T9;B3KNC3;Q9H9J5 Q9Y3T9 508 516 NOC2L Nucleolar complex protein 2 homolog yes no 2 1.1373E-05 125.71 2 0.88745 0.97586 11.184 2 Median 0.88745 0.97586 11.184 2 0 Median NaN NaN NaN 0 0 Median 143880000 77400000 66479000 143880000 77400000 66479000 0 0 0 8982 2139 9191 23815;23816 37319;37320;37321 37319 3 LSPDAIPGK YASLNFRDIMLATGKLSPDAIPGKWTSQDS MLATGKLSPDAIPGKWTSQDSLLGMEFSGR K L S G K W 1 0 0 1 0 0 0 1 0 1 1 1 0 0 2 1 0 0 0 0 0 0 9 0 896.49673 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1581 1589 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0036023 71.379 1 1.6838 1.8716 NaN 1 Median 1.6838 1.8716 NaN 1 0 Median NaN NaN NaN 0 0 Median 50545000 17105000 33439000 50545000 17105000 33439000 0 0 0 8983 587 9192 23817 37322;37323 37322 2 LSPELLNTGR ILVKMAKEELLFGGKLSPELLNTGRFETKD LFGGKLSPELLNTGRFETKDISDIEGEKDG K L S G R F 0 1 1 0 0 0 1 1 0 0 3 0 0 0 1 1 1 0 0 0 0 0 10 0 1098.6033 Q68E10;E9PB90;A8K2U2;P52789;Q53SG7;Q7Z7Q6 Q68E10 296 305 DKFZp686M1669;HK2 Hexokinase;Hexokinase-2 yes no 2 0.0046966 61.161 2 1.688 1.6986 NaN 1 Median 1.688 1.6986 NaN 1 0 Median NaN NaN NaN 0 0 Median 17786000 3617700 14168000 17786000 3617700 14168000 0 0 0 8984 714 9193 23818;23819 37324;37325;37326 37324 3 LSPEPWTPETGLVTDAFK NAMKLERFEIPIKVRLSPEPWTPETGLVTD EPWTPETGLVTDAFKLKRKELRNHYLKDIE R L S F K L 1 0 0 1 0 0 2 1 0 0 2 1 0 1 3 1 3 1 0 1 0 0 18 0 1986.9939 Q8TAF6;O60488;B4DH39;B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6;Q6PIM8 Q8TAF6 632 649 FACL4;ACSL4;ACSL3 Long-chain-fatty-acid--CoA ligase 4;Long-chain-fatty-acid--CoA ligase 3 no no 2 2.0449E-05 72.496 1 1.8415 1.9158 NaN 1 Median 1.8415 1.9158 NaN 1 0 Median NaN NaN NaN 0 0 Median 33791000 10209000 23581000 33791000 10209000 23581000 0 0 0 8985 1394;150 9194 23820 37327;37328;37329 37329 3 LSPFMADIR GEYAVHVLCNSEDIRLSPFMADIRDAPQDF NSEDIRLSPFMADIRDAPQDFHPDRVKARG R L S I R D 1 1 0 1 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 9 0 1048.5376 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 656 664 FLNA Filamin-A yes no 2 0.0088654 53.968 2 1.8121 1.8211 NaN 1 Median 1.8121 1.8211 NaN 1 0 Median NaN NaN NaN 0 0 Median 32270000 5764800 26505000 32270000 5764800 26505000 0 0 0 8986 1504 9195 23821;23822 37330;37331 37331 1268 2 LSPIFR LIATNGTPELQNPEKLSPIFRDFLNRCLEM TPELQNPEKLSPIFRDFLNRCLEMDVEKRG K L S F R D 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 6 0 731.43301 A8K5M4;Q9Y6B5;Q13177 A8K5M4 469 474 PAK2 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes no 2 0.032336 80.999 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8987 750 9196 23823 37332 37332 1 LSPLFGIYYSVEK KSYRLCDPSERELYKLSPLFGIYYSVEKIG YKLSPLFGIYYSVEKIGSLRVGDPVYRMV_ K L S E K I 0 0 0 0 0 0 1 1 0 1 2 1 0 1 1 2 0 0 2 1 0 0 13 0 1514.8021 Q969Z3 Q969Z3 309 321 MARC2 Mitochondrial amidoxime reducing component 2 yes yes 2 0.027209 44.188 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3213100 0 3213100 3213100 0 3213100 0 0 0 8988 1956 9197 23824 37333 37333 1 LSPPECLNASLLGGVLR STSKYKVTVAEVQRRLSPPECLNASLLGGV PPECLNASLLGGVLRRAKSKNGGRSLREKL R L S L R R 1 1 1 0 1 0 1 2 0 0 5 0 0 0 2 2 0 0 0 1 0 0 17 0 1794.9662 Q96SH1;P05549;A8K557;Q6VUC0;Q92481;C9JXZ2;H7C5E5;C1K3N0;B2R9E2;B2RAN6;Q92754;H7C4N4 Q96SH1 240 256 TFAP2A;TFAP2E;TFAP2B;TFAP2C Transcription factor AP-2-alpha;Transcription factor AP-2-epsilon;Transcription factor AP-2-beta;Transcription factor AP-2 gamma yes no 2 0.0018426 43.991 1 1 1.2943 1.0747 NaN 1 Median NaN NaN NaN 0 0 Median 1.2943 1.0747 NaN 1 0 Median 12523000 9829000 2693900 6658800 6658800 0 5864100 3170200 2693900 8989 1448 9198 23825;23826 37334;37335;37336 37335 3 LSPPSSSAASSYSFSDLNSTR LYEKKIFEYETQRRRLSPPSSSAASSYSFS SAASSYSFSDLNSTRGDADMYDLPKKEDAL R L S T R G 2 1 1 1 0 0 0 0 0 0 2 0 0 1 2 9 1 0 1 0 0 0 21 0 2159.9971 P50402 P50402 48 68 EMD Emerin yes yes 2 7.6031E-06 48.823 2 0.98078 1.0443 1.3568 2 Median 0.98078 1.0443 1.3568 2 0 Median NaN NaN NaN 0 0 Median 53634000 29435000 24199000 53634000 29435000 24199000 0 0 0 8990 1590 9199 23827;23828 37337;37338;37339;37340;37341 37338 5 LSPPYSSPQEFAQDVGR GTLDLTLIRARLQEKLSPPYSSPQEFAQDV PPYSSPQEFAQDVGRMFKQFNKLTEDKADV K L S G R M 1 1 0 1 0 2 1 1 0 0 1 0 0 1 3 3 0 0 1 1 0 0 17 0 1876.8955 B2R8R5;Q13263;M0R0K9 B2R8R5 751 767 TRIM28 Transcription intermediary factor 1-beta yes no 2 7.8158E-05 63.181 2 2 1.2838 1.2213 14.672 4 Median 1.2317 1.3946 3.8998 2 0 Median 1.3321 1.0856 1.8014 2 0 Median 188520000 79589000 108930000 163140000 68853000 94289000 25379000 10736000 14643000 8991 862 9200 23829;23830;23831;23832 37342;37343;37344;37345;37346;37347;37348;37349;37350 37347 9 LSPTDNLPR LSEQQLQLWPSDVDKLSPTDNLPRGSRAHI PSDVDKLSPTDNLPRGSRAHITLGCAADVE K L S P R G 0 1 1 1 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 0 0 0 9 0 1011.5349 B4DFN6;B4DI06;A0A024R1T5;P09543 B4DFN6 82 90 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 2 0.0067422 63.419 2 1.2839 1.3648 2.0462 2 Median 1.2839 1.3648 2.0462 2 0 Median NaN NaN NaN 0 0 Median 56309000 22953000 33357000 56309000 22953000 33357000 0 0 0 8992 88 9201 23833;23834 37351;37352;37353 37351 3 LSPVPVPR RAASAIYRLFDYRGRLSPVPVPRAVPVKRP LFDYRGRLSPVPVPRAVPVKRPRVTVPLVR R L S P R A 0 1 0 0 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 2 0 0 8 0 863.52289 A8K4T9;Q53GL6;Q5QPL9;Q9UKM9;Q5QPM0;Q5QPM1 A8K4T9 118 125 RALY RNA-binding protein Raly yes no 2 0.011407 69.998 2 0.92149 1.0269 0.19437 2 Median 0.92149 1.0269 0.19437 2 0 Median NaN NaN NaN 0 0 Median 105290000 54721000 50565000 105290000 54721000 50565000 0 0 0 8993 741 9202 23835;23836 37354;37355;37356 37355 3 LSQEQVDNFTLDINTAYAR NLSEKLSEQELQFRRLSQEQVDNFTLDINT QVDNFTLDINTAYARLRGIEQAVQSHAVAE R L S A R L 2 1 2 2 0 2 1 0 0 1 2 0 0 1 0 1 2 0 1 1 0 0 19 0 2197.0651 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 527 545 IMMT MICOS complex subunit MIC60 no no 2 4.0692E-08 92.063 2 2 1.3109 1.2236 18.674 4 Median 0.94923 1.0479 4.2568 2 0 Median 1.7173 1.4379 5.1579 2 0 Median 111900000 54270000 57634000 94536000 47983000 46554000 17367000 6287100 11080000 8994 1774;1029;1128 9203 23837;23838;23839;23840 37357;37358;37359;37360;37361;37362;37363;37364;37365;37366;37367;37368 37360 12 LSQERPGVLLNQFPCENLLTVK ADILFNFSHFKDYRKLSQERPGVLLNQFPC VLLNQFPCENLLTVKDCLASIARRAGGPEG K L S V K D 0 1 2 0 1 2 2 1 0 0 5 1 0 1 2 1 1 0 0 2 0 0 22 1 2554.3577 A0A024R4U3;Q14166 A0A024R4U3 347 368 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 3 0.00086962 32.702 1 1.0402 0.8516 NaN 1 Median NaN NaN NaN 0 0 Median 1.0402 0.8516 NaN 1 0 Median 4759200 1848900 2910300 0 0 0 4759200 1848900 2910300 8995 161 9204 23841 37369;37370 37370 2 LSQILTDFPK YMRKVKFTQQNYHDRLSQILTDFPKLDDIH NYHDRLSQILTDFPKLDDIHPFYADLMNIL R L S P K L 0 0 0 1 0 1 0 0 0 1 2 1 0 1 1 1 1 0 0 0 0 0 10 0 1160.6441 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;O60747;Q5T3R7 Q8N4P8 60 69 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 5.7859E-12 143.7 2 2 1.3951 1.3993 1.414 4 Median 1.1956 1.3993 0.35168 2 0 Median 1.6422 1.3854 2.2081 2 0 Median 676830000 301220000 375610000 565590000 256890000 308710000 111230000 44337000 66897000 8996 1183 9205 23842;23843;23844;23845 37371;37372;37373;37374;37375;37376;37377;37378;37379;37380;37381 37372 11 LSQLEEHLSQLQDNPPQEK DKKCLEEKNEILQGKLSQLEEHLSQLQDNP EEHLSQLQDNPPQEKGEVLGDVLQLETLKQ K L S E K G 0 0 1 1 0 4 3 0 1 0 4 1 0 0 2 2 0 0 0 0 0 0 19 0 2232.1022 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 387 405 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 2.2661E-12 102.07 1 1.528 1.2351 NaN 1 Median NaN NaN NaN 0 0 Median 1.528 1.2351 NaN 1 0 Median 22978000 9462300 13516000 0 0 0 22978000 9462300 13516000 8997 186;1747;718 9206 23846 37382 37382 1 LSQNISELK FKEHLQVFWDGSFWKLSQNISELKDGELWN DGSFWKLSQNISELKDGELWNKFFVRILNA K L S L K D 0 0 1 0 0 1 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 9 0 1030.5659 O60566;H3BTB9 O60566 980 988 BUB1B;PAK6 Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 2 0.0064705 72.23 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5375700 0 5375700 5375700 0 5375700 0 0 0 8998 1396 9207 23847 37383 37383 1 LSQNNFALGYK WLAGYQMSFDTAKSKLSQNNFALGYKAADF AKSKLSQNNFALGYKAADFQLHTHVNDGTE K L S Y K A 1 0 2 0 0 1 0 1 0 0 2 1 0 1 0 1 0 0 1 0 0 0 11 0 1253.6404 Q9Y277 Q9Y277 164 174 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2 3.3061E-08 120.15 2 2 1.5566 1.7579 3.6871 2 Median 1.5566 1.7579 3.6871 2 0 Median NaN NaN NaN 0 0 Median 236640000 87816000 148830000 221170000 87816000 133350000 15474000 0 15474000 8999 2124 9208 23848;23849;23850;23851 37384;37385;37386;37387;37388;37389;37390 37387 7 LSQSLLELWR TGKPYVPLLEAEEVRLSQSLLELWRRRGPV AEEVRLSQSLLELWRRRGPVWQEAPQLPVD R L S W R R 0 1 0 0 0 1 1 0 0 0 4 0 0 0 0 2 0 1 0 0 0 0 10 0 1243.6925 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 385 394 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 7.1687E-13 149.72 2 2 1.4511 1.3128 21.374 3 Median 0.98642 0.99791 NaN 1 0 Median 1.5939 1.4128 10.384 2 0 Median 17654000 9926200 7727400 13240000 8017100 5222900 4413600 1909100 2504500 9000 122 9209 23852;23853;23854;23855 37391;37392;37393;37394;37395;37396;37397;37398 37393 8 LSQTPTHMPTILDDPGK GCIPPKLPSGSPSPKLSQTPTHMPTILDDP QTPTHMPTILDDPGKKVKKPAPPQHFSPRT K L S G K K 0 0 0 2 0 1 0 1 1 1 2 1 1 0 3 1 3 0 0 0 0 0 17 0 1849.9244 A0A024R8V6;Q9P275;A0A075B784;E9PEW0;B3KMW2;Q9H9C5 A0A024R8V6 518 534 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 0.0068863 49.343 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6119600 0 6119600 6119600 0 6119600 0 0 0 9001 260 9210 23856 37399 37399 195 1 LSQVSDSVSGQTVVDPK MRKIGQARNTLMDMRLSQVSDSVSGQTVVD QVSDSVSGQTVVDPKGYLTDLNSMIPTHGG R L S P K G 0 0 0 2 0 2 0 1 0 0 1 1 0 0 1 4 1 0 0 4 0 0 17 0 1744.8843 O94906 O94906 255 271 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 1.3392E-06 87.863 1 1 0.80692 0.72917 8.9056 2 Median 0.77576 0.77657 NaN 1 0 Median 0.83934 0.68467 NaN 1 0 Median 32407000 16784000 15623000 26677000 13799000 12878000 5729900 2984900 2745000 9002 1418 9211 23857;23858 37400;37401;37402 37401 3 LSQYLDSSQVK DQWEARCGLALALNKLSQYLDSSQVKPLFQ ALNKLSQYLDSSQVKPLFQFFVPDALNDRH K L S V K P 0 0 0 1 0 2 0 0 0 0 2 1 0 0 0 3 0 0 1 1 0 0 11 0 1266.6456 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1244 1254 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 4.3615E-10 131.12 2 1 1.6194 1.6722 52.057 3 Plateau 1.6077 1.623 4.2287 2 0 Median 0.7713 0.65974 NaN 1 0 Median 59361000 19377000 39984000 57943000 18606000 39337000 1417900 771790 646130 9003 1205 9212 23859;23860;23861 37403;37404;37405;37406;37407 37406 5 LSSARPGGLGSSSLYGLGASRPR TSRSAAFSGRGAQVRLSSARPGGLGSSSLY LGSSSLYGLGASRPRVAVRSAYGGPVGAGI R L S P R V 2 3 0 0 0 0 0 5 0 0 4 0 0 0 2 6 0 0 1 0 0 0 23 2 2245.1927 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 26 48 KRT7 Keratin, type II cytoskeletal 7 no no 4 0.060464 12.554 1 1.2396 1.4244 NaN 1 Median NaN NaN NaN 0 0 Median 1.2396 1.4244 NaN 1 0 Median 6250100 2877900 3372200 0 0 0 6250100 2877900 3372200 + 9004 1171;1158 9213 23862 37408 37408 1 LSSASTGKPPLSVEDDFEK VSGPSSSQMSMKTRRLSSASTGKPPLSVED STGKPPLSVEDDFEKLIWEISGGKLEAEID R L S E K L 1 0 0 2 0 0 2 1 0 0 2 2 0 1 2 4 1 0 0 1 0 0 19 1 2005.9844 B4DLG2;O75152;B4DYM8;A0A1B0GTU1;A0A024R8H9;A0A1B0GUI2 B4DLG2 703 721 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 3 0.023915 21.045 1 2.2312 2.6231 NaN 1 Median 2.2312 2.6231 NaN 1 0 Median NaN NaN NaN 0 0 Median 13962000 4730500 9231700 13962000 4730500 9231700 0 0 0 9005 996 9214 23863 37409 37409 1 LSSCDSFTSTINELNHCLSLR EHTEIDHWLEFSATKLSSCDSFTSTINELN FTSTINELNHCLSLRTYLVGNSLSLADLCV K L S L R T 0 1 2 1 2 0 1 0 1 1 4 0 0 1 0 5 2 0 0 0 0 0 21 0 2453.1315 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5;V9GZ76 P07814 89 109 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 0.00029288 43.045 1 2 0.84005 0.7145 NaN 1 Median NaN NaN NaN 0 0 Median 0.84005 0.7145 NaN 1 0 Median 9277500 2443500 6833900 0 0 0 9277500 2443500 6833900 9006 1454 9215 23864;23865;23866 37410;37411;37412;37413 37411 4 LSSDVLTLLIK PQARALCGLDESKAKLSSDVLTLLIKQYCR SKAKLSSDVLTLLIKQYCRESGVRNLQKQV K L S I K Q 0 0 0 1 0 0 0 0 0 1 4 1 0 0 0 2 1 0 0 1 0 0 11 0 1200.7329 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0 K7EJE8 561 571 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 1.4137E-05 107.21 2 3.5785 3.7131 3.8896 2 Median 3.5785 3.7131 3.8896 2 0 Median NaN NaN NaN 0 0 Median 54765000 10859000 43906000 54765000 10859000 43906000 0 0 0 9007 946 9216 23867;23868 37414;37415;37416;37417;37418 37418 5 LSSEDEEEDEAEDDQSEASGK DPLRFKPHPSNMMSKLSSEDEEEDEAEDDQ EEDEAEDDQSEASGKKSVKGVSKKYVPPRL K L S G K K 2 0 0 4 0 1 7 1 0 0 1 1 0 0 0 4 0 0 0 0 0 0 21 0 2297.8779 Q8NEJ9;G3V4G1 Q8NEJ9 141 161 NGDN Neuroguidin yes no 2 8.6811E-06 55.213 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2223000 0 2223000 2223000 0 2223000 0 0 0 9008 1927 9217 23869 37419 37419 1 LSSEDEEEDEAEDDQSEASGKK DPLRFKPHPSNMMSKLSSEDEEEDEAEDDQ EDEAEDDQSEASGKKSVKGVSKKYVPPRLV K L S K K S 2 0 0 4 0 1 7 1 0 0 1 2 0 0 0 4 0 0 0 0 0 0 22 1 2425.9729 Q8NEJ9;G3V4G1 Q8NEJ9 141 162 NGDN Neuroguidin yes no 3 4.9704E-05 49.559 1 2 2.0332 1.7561 5.7207 2 Median NaN NaN NaN 0 0 Median 2.0332 1.7561 5.7207 2 0 Median 10721000 2393100 8328200 3636400 0 3636400 7084900 2393100 4691800 9009 1927 9218 23870;23871;23872 37420;37421;37422 37420 3 LSSEMNTSTVNSAR EELEQTYHAKLENARLSSEMNTSTVNSARE RLSSEMNTSTVNSAREELMESRMRIESLSS R L S A R E 1 1 2 0 0 0 1 0 0 0 1 0 1 0 0 4 2 0 0 1 0 0 14 0 1495.6937 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 277 290 LMNB1 Lamin-B1 yes no 2 8.4314E-47 179.19 3 2 1.0988 1.0541 4.2369 3 Plateau 1.0403 1.0541 NaN 1 0 Median 1.1571 1.0013 4.2767 2 0 Median 34293000 11550000 22742000 25357000 7772000 17585000 8935700 3778000 5157700 9010 1502 9219;9220 23873;23874;23875;23876;23877 37423;37424;37425;37426;37427;37428;37429 37425 1260 7 LSSFWQLIVDEK LLLKLSVADSQAEAKLSSFWQLIVDEKKQV EAKLSSFWQLIVDEKKQVFTSEKFLVMASE K L S E K K 0 0 0 1 0 1 1 0 0 1 2 1 0 1 0 2 0 1 0 1 0 0 12 0 1463.766 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 510 521 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 2.1569E-08 112.13 2 1.6354 1.6519 NaN 1 Median 1.6354 1.6519 NaN 1 0 Median NaN NaN NaN 0 0 Median 11659000 3718600 7940300 11659000 3718600 7940300 0 0 0 9011 1205 9221 23878;23879 37430;37431 37430 2 LSSGFDDIDLPSAVK VHGFNSYGSHRTLQRLSSGFDDIDLPSAVK LSSGFDDIDLPSAVKYLMASDPNLQVLGAA R L S V K Y 1 0 0 3 0 0 0 1 0 1 2 1 0 1 1 3 0 0 0 1 0 0 15 0 1562.7828 Q9Y446;E9PKC4 Q9Y446 312 326 PKP3 Plakophilin-3 yes no 2 0.012739 48.659 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7332000 7332000 0 7332000 7332000 0 0 0 0 9012 2142 9222 23880;23881 37432;37433 37433 2 LSSGQYPNLETFALDVR KVIKKPMDFSTIREKLSSGQYPNLETFALD SGQYPNLETFALDVRLVFDNCETFNEDDSD K L S V R L 1 1 1 1 0 1 1 1 0 0 3 0 0 1 1 2 1 0 1 1 0 0 17 0 1908.9581 Q9UIF8 Q9UIF8 2114 2130 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B yes yes 2 0.027408 23.881 1 1.0707 0.89536 NaN 1 Median NaN NaN NaN 0 0 Median 1.0707 0.89536 NaN 1 0 Median 3210200 1646700 1563500 0 0 0 3210200 1646700 1563500 9013 2102 9223 23882 37434 37434 1 LSSLFVK MRHHIETGGGQLPAKLSSLFVKCLQNPSSD GGGQLPAKLSSLFVKCLQNPSSDIRLVAEK K L S V K C 0 0 0 0 0 0 0 0 0 0 2 1 0 1 0 2 0 0 0 1 0 0 7 0 792.47454 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2551 2557 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.032441 78.616 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16934000 0 16934000 16934000 0 16934000 0 0 0 9014 1205 9224 23883;23884 37435;37436 37435 2 LSSNAVSQITR EIQDVSCAWKELNRKLSSNAVSQITRMCLL LNRKLSSNAVSQITRMCLLKGNMGVCFDVP K L S T R M 1 1 1 0 0 1 0 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 11 0 1174.6306 B4DW97;A0A087WVC1;Q9BQ39;B4DED6;K0J110;Q9NTA9 B4DW97 612 622 DDX50;mcdrh;DKFZp761E0323 ATP-dependent RNA helicase DDX50 yes no 2 7.4939E-06 94.309 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9015 416 9225 23885 37437 37437 1 LSSPATLNSR NFNGNTLDNDIMLIKLSSPATLNSRVATVS IMLIKLSSPATLNSRVATVSLPRSCAAAGT K L S S R V 1 1 1 0 0 0 0 0 0 0 2 0 0 0 1 3 1 0 0 0 0 0 10 0 1044.5564 CON__P00761 CON__P00761 98 107 yes yes 2 9.1716E-12 128.36 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2022700000 2022700000 0 1764900000 1764900000 0 257800000 257800000 0 + 9016 1148 9226 23886;23887;23888;23889 37438;37439;37440;37441;37442;37443;37444 37439 7 LSSPVLHR DAGAIGQRLSNGLARLSSPVLHRLRLREDE LSNGLARLSSPVLHRLRLREDENAEPVGTT R L S H R L 0 1 0 0 0 0 0 0 1 0 2 0 0 0 1 2 0 0 0 1 0 0 8 0 907.52395 Q16643;D6R9W4;B3KSQ7;D6RCR4 Q16643 140 147 DBN1 Drebrin yes no 3 0.0052195 60.76 2 1.3179 1.3197 NaN 1 Median 1.3179 1.3197 NaN 1 0 Median NaN NaN NaN 0 0 Median 30598000 20515000 10083000 30598000 20515000 10083000 0 0 0 9017 1773 9227 23890;23891 37445;37446;37447 37447 3 LSSQISAGEEK NLTVNGGGWNEKSVKLSSQISAGEEKWNSV KSVKLSSQISAGEEKWNSVSPASAGKRKTE K L S E K W 1 0 0 0 0 1 2 1 0 1 1 1 0 0 0 3 0 0 0 0 0 0 11 0 1147.5721 A0A024R9D2;Q86UE4;E5RJU9;H0YB56 A0A024R9D2 293 303 MTDH Protein LYRIC yes no 2 0.0080859 51.436 2 0.62184 0.5203 29.045 2 Median NaN NaN NaN 0 0 Median 0.62184 0.5203 29.045 2 0 Median 3806000 2490500 1315500 0 0 0 3806000 2490500 1315500 9018 275 9228 23892;23893 37448;37449 37448 2 LSSSFSSR RGRPQVRLPVKTRGKLSSSFSSRGQQQEPG PVKTRGKLSSSFSSRGQQQEPGRYPSRSQQ K L S S R G 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 5 0 0 0 0 0 0 8 0 869.4243 D3DS96;Q9NRL2;Q59G54;B3KND8 D3DS96 1277 1284 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.029249 52.716 1 1.6729 1.3728 NaN 1 Median NaN NaN NaN 0 0 Median 1.6729 1.3728 NaN 1 0 Median 17094000 6068900 11025000 0 0 0 17094000 6068900 11025000 9019 1187 9229 23894 37450;37451 37451 2 LSSSGIWANTSPEAELFPALRPR GDLSLRPEDGVWALRLSSSGIWANTSPEAE NTSPEAELFPALRPRRVGIALDYEGGTVTF R L S P R R 3 2 1 0 0 0 2 1 0 1 3 0 0 1 3 4 1 1 0 0 0 0 23 1 2498.2918 A0A024RCP3;Q12899 A0A024RCP3 465 487 TRIM26 Tripartite motif-containing protein 26 yes no 3 2.1817E-05 53.342 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14050000 6091200 7958900 0 0 0 14050000 6091200 7958900 9020 365 9230 23895;23896;23897 37452;37453;37454;37455 37453 4 LSSTQEEVHQLR ALEAALVEKGEFALRLSSTQEEVHQLRRGI ALRLSSTQEEVHQLRRGIEKLRVRIEADEK R L S L R R 0 1 0 0 0 2 2 0 1 0 2 0 0 0 0 2 1 0 0 1 0 0 12 0 1425.7212 P49454 P49454 2203 2214 CENPF Centromere protein F yes yes 2;3 5.9796E-05 84.718 3 1.1757 1.233 7.5769 2 Median 1.1757 1.233 7.5769 2 0 Median NaN NaN NaN 0 0 Median 65305000 33390000 31915000 65305000 33390000 31915000 0 0 0 9021 1581 9231 23898;23899;23900 37456;37457;37458;37459 37457 4 LSSTSVYDLTPGEK ACMELRLSNPSLVKKLSSTSVYDLTPGEKM KLSSTSVYDLTPGEKMKILHALCGKLLTLV K L S E K M 0 0 0 1 0 0 1 1 0 0 2 1 0 0 1 3 2 0 1 1 0 0 14 0 1495.7406 D3DS96;Q9NRL2;Q59G54;A0A087WWN7 D3DS96 599 612 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.0022937 64.55 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2248800 0 2248800 0 0 0 2248800 0 2248800 9022 1187 9232 23901;23902;23903 37460;37461;37462 37460 3 LSTADLFR LNIEMQLKAYEIEKRLSTADLFRFPNFETI AYEIEKRLSTADLFRFPNFETICWYVGKHI R L S F R F 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 8 0 921.49198 H0Y3N9;Q9UPP1;A0A024R9Y4;H0Y589;H0Y7M8;H7BZB7 H0Y3N9 257 264 PHF8 Histone lysine demethylase PHF8 yes no 2 0.052149 49.097 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3726600 3726600 0 3726600 3726600 0 0 0 0 9023 1279 9233 23904 37463 37463 1 LSTALAR DATYTSARTLLAILRLSTALARLRMVDVVE RTLLAILRLSTALARLRMVDVVEKEDVNEA R L S A R L 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 7 0 730.43374 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;Q9H4N9 B3KUD7 505 511 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.0076797 128.82 2 1.1578 1.2565 NaN 1 Median 1.1578 1.2565 NaN 1 0 Median NaN NaN NaN 0 0 Median 43906000 28565000 15341000 43906000 28565000 15341000 0 0 0 9024 560 9234 23905;23906 37464;37465;37466 37466 3 LSTDHIPILYR RRGSPLLIGVRSEHKLSTDHIPILYRTART SEHKLSTDHIPILYRTARTQIGSKFTRWGS K L S Y R T 0 1 0 1 0 0 0 0 1 2 2 0 0 0 1 1 1 0 1 0 0 0 11 0 1326.7296 Q06210 Q06210 217 227 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 3 0.0052917 45.433 1 2.4385 2.5127 NaN 1 Median 2.4385 2.5127 NaN 1 0 Median NaN NaN NaN 0 0 Median 19801000 5593000 14208000 19801000 5593000 14208000 0 0 0 9025 1688 9235 23907 37467;37468 37467 2 LSTDVDLIVEVLR YVPITTVANLDHIKKLSTDVDLIVEVLRSL KKLSTDVDLIVEVLRSLPLVQVDEKGEKVR K L S L R S 0 1 0 2 0 0 1 0 0 1 3 0 0 0 0 1 1 0 0 3 0 0 13 0 1470.8294 Q92615 Q92615 203 215 LARP4B La-related protein 4B yes yes 2 4.6889E-09 112.15 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 918050 0 918050 918050 0 918050 0 0 0 9026 1949 9236 23908;23909 37469;37470 37469 2 LSTGCTGTLVAEK GKDFLLNYPFSTSVKLSTGCTGTLVAEKHV VKLSTGCTGTLVAEKHVLTAAHCIHDGKTY K L S E K H 1 0 0 0 1 0 1 2 0 0 2 1 0 0 0 1 3 0 0 1 0 0 13 0 1335.6704 B3KQQ9;O95084 B3KQQ9 156 168 PRSS23 Serine protease 23 yes no 2 0.0024172 69.721 1 1 0.84237 0.7071 NaN 1 Median NaN NaN NaN 0 0 Median 0.84237 0.7071 NaN 1 0 Median 7029000 6095700 933240 5144400 5144400 0 1884600 951310 933240 9027 929 9237 23910;23911 37471;37472 37471 2 LSTIALALGVER LRNEDVQLRLNSIKKLSTIALALGVERTRS IKKLSTIALALGVERTRSELLPFLTDTIYD K L S E R T 2 1 0 0 0 0 1 1 0 1 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1241.7343 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;C9J9C1;E9PPI5;E9PNM7;E9PHZ6;A8K8B0;P30154 B4DQY1 35 46 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 2 7.1571E-05 97.456 2 4 1.4749 1.5275 3.6801 2 Median 1.4749 1.5275 3.6801 2 0 Median NaN NaN NaN 0 0 Median 46431000 21514000 24917000 41739000 16822000 24917000 4691900 4691900 0 9028 723;774 9238 23912;23913;23914;23915;23916;23917 37473;37474;37475;37476;37477;37478;37479;37480 37474 8 LSTLLNHNNDTEEEER KVLNILEKNIQDGSKLSTLLNHNNDTEEEE STLLNHNNDTEEEERLWRDLIMERVTKSAD K L S E R L 0 1 3 1 0 0 4 0 1 0 3 0 0 0 0 1 2 0 0 0 0 0 16 0 1912.8763 Q6IEH8;Q6KC79 Q6IEH8 1279 1294 NIPBL Nipped-B-like protein yes no 3 0.0072054 27.032 1 2 0.81868 0.73929 1.5513 3 Median 0.70797 0.73282 NaN 1 0 Median 0.8441 0.74723 1.5112 2 0 Median 27714000 13305000 14409000 23189000 10919000 12270000 4524500 2385700 2138800 9029 1843 9239 23918;23919;23920 37481;37482;37483 37481 3 LSTPIAGLDNINVFLK LINKLKPGVIKKINRLSTPIAGLDNINVFL STPIAGLDNINVFLKACEQIGLKEAQLFHP R L S L K A 1 0 2 1 0 0 0 1 0 2 3 1 0 1 1 1 1 0 0 1 0 0 16 0 1713.9665 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMP7 A0A1P7ZIM8 63 78 LMO7 LIM domain only protein 7 yes no 2 0.0004078 50.207 1 1.8448 1.9312 NaN 1 Median 1.8448 1.9312 NaN 1 0 Median NaN NaN NaN 0 0 Median 10533000 3724700 6808600 10533000 3724700 6808600 0 0 0 9030 640 9240 23921 37484;37485 37484 2 LSTPSSVTK INFRVMSCDSFPIRRLSTPSSVTKPANSVF SFPIRRLSTPSSVTKPANSVFTTKWIWYWK R L S T K P 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 3 2 0 0 1 0 0 9 0 918.50221 Q7Z2W4;A8K9U6;C9J6P4;Q05DV5;H7C5K1 Q7Z2W4 589 597 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.018227 52.255 1 1.291 1.3527 NaN 1 Median 1.291 1.3527 NaN 1 0 Median NaN NaN NaN 0 0 Median 10734000 4387500 6346800 10734000 4387500 6346800 0 0 0 9031 1873 9241 23922 37486 37486 1 LSTPSTGGSVDIISVK CAKSTVTTTTTTVTKLSTPSTGGSVDIISV STPSTGGSVDIISVKEQSKTVVTTTVTDSL K L S V K E 0 0 0 1 0 0 0 2 0 2 1 1 0 0 1 4 2 0 0 2 0 0 16 0 1559.8407 E7ETD6;Q12830;F5GXF5 E7ETD6 1622 1637 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 1.1062E-06 89.629 4 2 1.9949 1.6315 36.663 3 Median 0.8915 0.93588 NaN 1 0 Median 2.1715 1.7466 9.6405 2 0 Median 40857000 23418000 17439000 31909000 20421000 11488000 8948300 2997700 5950600 9032 1224 9242 23923;23924;23925;23926;23927;23928 37487;37488;37489;37490;37491;37492;37493;37494;37495;37496 37487 10 LSTQEGLVQELQK ELKNLRACVLELEERLSTQEGLVQELQKKQ ERLSTQEGLVQELQKKQVELQEERRGLMSQ R L S Q K K 0 0 0 0 0 3 2 1 0 0 3 1 0 0 0 1 1 0 0 1 0 0 13 0 1471.7882 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 220 232 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 3.4365E-14 136.48 2 2 1.0809 0.98722 13.06 4 Median 0.85541 0.89732 0.71323 2 0 Median 1.4002 1.1189 4.9186 2 0 Median 74086000 39279000 34807000 65031000 35441000 29590000 9054800 3837700 5217200 9033 371 9243 23929;23930;23931;23932 37497;37498;37499;37500;37501;37502;37503;37504 37499 8 LSTSGNRPPANAETFSCNK IKNINPARISMKMWKLSTSGNRPPANAETF GNRPPANAETFSCNKIKDNDKEDGCFYFRD K L S N K I 2 1 3 0 1 0 1 1 0 0 1 1 0 1 2 3 2 0 0 0 0 0 19 1 2049.9538 A6NHR9;J3KTL8 A6NHR9 1417 1435 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.00013384 44.382 2 2 1.147 1.1119 12.899 4 Median 0.91101 1.0112 13.58 2 0 Median 1.4089 1.1807 8.6407 2 0 Median 40786000 19417000 21368000 33491000 16316000 17175000 7294100 3101200 4192900 9034 684 9244 23933;23934;23935;23936 37505;37506;37507;37508;37509;37510;37511 37508 7 LSVAAQEAAR EEAEKMKQVAEEAARLSVAAQEAARLRQLA EEAARLSVAAQEAARLRQLAEEDLAQQRAL R L S A R L 4 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1014.5458 Q15149 Q15149 2420 2429 PLEC Plectin yes yes 2 1.136E-09 133.13 2 0.95176 1.0326 34.465 2 Median 0.95176 1.0326 34.465 2 0 Median NaN NaN NaN 0 0 Median 85305000 41769000 43536000 85305000 41769000 43536000 0 0 0 9035 1754 9245 23937;23938 37512;37513;37514;37515 37512 4 LSVACFYGGTPYGGQFER LANQVSKDFSDITKKLSVACFYGGTPYGGQ ACFYGGTPYGGQFERMRNGIDILVGTPGRI K L S E R M 1 1 0 0 1 1 1 4 0 0 1 0 0 2 1 1 1 0 2 1 0 0 18 0 2007.9149 Q9NR30 Q9NR30 287 304 DDX21 Nucleolar RNA helicase 2 yes yes 2 2.0628E-12 111.12 2 2 1.0592 1.0271 6.2378 4 Median 0.98111 1.0399 7.4965 2 0 Median 1.1717 1.0152 7.4007 2 0 Median 155100000 74084000 81016000 59699000 29510000 30188000 95401000 44573000 50827000 9036 2065 9246 23939;23940;23941;23942 37516;37517;37518;37519;37520;37521;37522 37520 7 LSVASTPISQR INKGGVRTPVPPRGRLSVASTPISQRRSQG PRGRLSVASTPISQRRSQGRSCGPASQSTL R L S Q R R 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 3 1 0 0 1 0 0 11 0 1157.6404 Q9BXS6;A8K4B4;H0YMD2 Q9BXS6 239 249 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.00020612 92.538 1 3 0.49788 0.49038 20.08 2 Median 0.38787 0.42547 NaN 1 0 Median 0.63908 0.56519 NaN 1 0 Median 47527000 35299000 12228000 40192000 29549000 10643000 7335000 5750500 1584400 9037 2014 9247 23943;23944;23945;23946 37523;37524;37525;37526;37527;37528 37523 6 LSVDEAVDVGLVNEELR QAATGFLLDPCTRQKLSVDEAVDVGLVNEE VDEAVDVGLVNEELRERLLKAERAATGYRD K L S L R E 1 1 1 2 0 0 3 1 0 0 3 0 0 0 0 1 0 0 0 4 0 0 17 0 1855.9527 A0A075B730;A0A087X1U6;P58107 A0A075B730 1924 1940 EPPK1 Epiplakin no no 2 7.8158E-05 80.469 3 2.01 2.0092 18.68 2 Median 2.01 2.0092 18.68 2 0 Median NaN NaN NaN 0 0 Median 23990000 7913500 16076000 23990000 7913500 16076000 0 0 0 9038 397;1622 9248 23947;23948;23949 37529;37530;37531 37529 3 LSVEEAVAAGVVGGEIQEK QAATGFVIDPVRNLRLSVEEAVAAGVVGGE EAVAAGVVGGEIQEKLLSAERAVTGYTDPY R L S E K L 3 0 0 0 0 1 4 3 0 1 1 1 0 0 0 1 0 0 0 4 0 0 19 0 1883.984 A0A075B730;A0A087X1U6;P58107 A0A075B730 2256 2274 EPPK1 Epiplakin no no 2 1.0551E-16 117.2 2 2 2.0479 1.9453 28.702 4 Median 2.2273 2.51 3.74 2 0 Median 1.9071 1.5293 1.7133 2 0 Median 195320000 62631000 132690000 159170000 51324000 107850000 36150000 11307000 24843000 9039 397;1622 9249 23950;23951;23952;23953 37532;37533;37534;37535;37536 37534 5 LSVHFHPSVALFAK LFCGAENTSLWELKKLSVHFHPSVALFAKT KLSVHFHPSVALFAKTILQGNYIQYSGDPL K L S A K T 2 0 0 0 0 0 0 0 2 0 2 1 0 2 1 2 0 0 0 2 0 0 14 0 1551.8562 B2R5U7;Q03701 B2R5U7 719 732 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.00082879 48.405 2 1.1834 0.95419 4.64 2 Median NaN NaN NaN 0 0 Median 1.1834 0.95419 4.64 2 0 Median 16037000 7599000 8438200 0 0 0 16037000 7599000 8438200 9040 836;1683 9250 23954;23955 37537;37538;37539;37540 37540 4 LSVISVEDPPQR EVIKPGDLGVDLTSKLSVISVEDPPQRTAG TSKLSVISVEDPPQRTAGVKVETTEDLVAK K L S Q R T 0 1 0 1 0 1 1 0 0 1 1 0 0 0 2 2 0 0 0 2 0 0 12 0 1338.7143 P38117 P38117 222 233 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.00068455 67.334 1 1 3.1377 3.0635 80.352 2 Median 5.1133 5.4073 NaN 1 0 Median 1.9254 1.7357 NaN 1 0 Median 25654000 5588600 20066000 23596000 4877600 18718000 2058800 711000 1347800 9041 1551 9251 23956;23957 37541;37542;37543 37541 3 LSVLIHNSDEHK LFVFGYRAQKIRSKKLSVLIHNSDEHKDIQ SKKLSVLIHNSDEHKDIQSCTVEVHFQKII K L S H K D 0 0 1 1 0 0 1 0 2 1 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1390.7205 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 142 153 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein no no 3 0.0001339 62.891 1 1.7687 1.4604 NaN 1 Median NaN NaN NaN 0 0 Median 1.7687 1.4604 NaN 1 0 Median 31142000 11321000 19820000 0 0 0 31142000 11321000 19820000 9042 2070;1136 9252 23958 37544;37545 37544 2 LSVLLCANADGSEK GLCGGDGRPRQATQRLSVLLCANADGSEKL RLSVLLCANADGSEKLPPLVAGKSAKPRAG R L S E K L 2 0 1 1 1 0 1 1 0 0 3 1 0 0 0 2 0 0 0 1 0 0 14 0 1475.729 P07199 P07199 225 238 CENPB Major centromere autoantigen B yes yes 2 0.00020564 68.536 2 2 1.3616 1.2412 17.183 4 Median 1.0138 1.0617 2.3368 2 0 Median 1.7666 1.4284 0.10526 2 0 Median 53581000 24948000 28633000 35548000 18249000 17299000 18034000 6699900 11334000 9043 1450 9253 23959;23960;23961;23962 37546;37547;37548;37549;37550;37551;37552;37553 37553 8 LSVPTSDEEDEVPAPK DDDGEEKELMERLKKLSVPTSDEEDEVPAP SVPTSDEEDEVPAPKPRGGKKTKGGNVFAA K L S P K P 1 0 0 2 0 0 3 0 0 0 1 1 0 0 3 2 1 0 0 2 0 0 16 0 1711.8152 Q8NE71;Q2L6I2;B4DNU2;Q5STZ8;A0PJ72;F5GYK6 Q8NE71 104 119 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.00012766 77.185 2 1.3655 1.402 19.678 2 Median 1.3655 1.402 19.678 2 0 Median NaN NaN NaN 0 0 Median 32180000 15679000 16501000 32180000 15679000 16501000 0 0 0 9044 1926 9254 23963;23964 37554;37555;37556;37557;37558 37556 5 LSVSADLESR EVDFYYDPKHVIFSRLSVSADLESRICVVG VIFSRLSVSADLESRICVVGENGAGKSTML R L S S R I 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 3 0 0 0 1 0 0 10 0 1075.551 B4DRU9;A0A0S2Z5L1;Q9NUQ8 B4DRU9 470 479 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 0.00084949 80.231 2 1.6177 1.6393 17.129 2 Median 1.6177 1.6393 17.129 2 0 Median NaN NaN NaN 0 0 Median 20311000 7580400 12730000 20311000 7580400 12730000 0 0 0 9045 583 9255 23965;23966 37559;37560;37561;37562;37563 37562 5 LSVYAALQR RSSIAGLLLKATNEKLSVYAALQRQLLSPG KATNEKLSVYAALQRQLLSPGTALILLEAQ K L S Q R Q 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1019.5764 Q15149;D3DWL0 Q15149 2847 2855 PLEC;PLEC1 Plectin yes no 2 2.5049E-05 113.89 2 1 1.929 2.1275 6.0645 2 Median 1.929 2.1275 6.0645 2 0 Median NaN NaN NaN 0 0 Median 98257000 30033000 68224000 95448000 30033000 65414000 2809600 0 2809600 9046 1754 9256 23967;23968;23969 37564;37565;37566;37567;37568 37564 5 LSVYQAMK TSCIAGVFVDATKERLSVYQAMKKGIIRPG VDATKERLSVYQAMKKGIIRPGTAFELLEA R L S M K K 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 1 1 0 0 8 0 938.48954 Q15149;D3DWL0;Q96IE3 Q15149 4084 4091 PLEC;PLEC1 Plectin yes no 2 0.0027219 79.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15571000 0 15571000 15571000 0 15571000 0 0 0 9047 1754 9257 23970 37569 37569 1615 1 LSYNVR ______________________________ ______________________________ R L S V R E 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 6 0 750.40244 V9HVZ0;A8K588;Q13247;Q59GY3;B5BU15 V9HVZ0 9 14 HEL-S-91;SRSF6;SFRS6 Serine/arginine-rich splicing factor 6 yes no 2 0.034509 113.82 2 1.3218 1.4893 0.0043752 2 Median 1.3218 1.4893 0.0043752 2 0 Median NaN NaN NaN 0 0 Median 194790000 87090000 107700000 194790000 87090000 107700000 0 0 0 9048 748 9258 23971;23972 37570;37571 37570 2 LSYPTFFPR YLQTVQYGVHGNFPRLSYPTFFPRFEFQDV HGNFPRLSYPTFFPRFEFQDVIPPDDFLTS R L S P R F 0 1 0 0 0 0 0 0 0 0 1 0 0 2 2 1 1 0 1 0 0 0 9 0 1126.5811 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;Q05DQ5;Q05DF7;Q05BZ6 Q59GQ7 28 36 HLTF Helicase-like transcription factor yes no 2 0.0042156 69.825 2 0.46688 0.47159 2.4582 2 Median 0.46688 0.47159 2.4582 2 0 Median NaN NaN NaN 0 0 Median 26179000 17731000 8447100 26179000 17731000 8447100 0 0 0 9049 512 9259 23973;23974 37572;37573;37574 37574 3 LSYTQLLR PSEVRSYVDPSTDERLSYTQLLRRCRRDDG DPSTDERLSYTQLLRRCRRDDGTGQLLLPL R L S L R R 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 1 0 0 0 8 0 992.56548 Q15149;D3DWL0;Q96IE3 Q15149 3992 3999 PLEC;PLEC1 Plectin yes no 2 0.014233 63.48 2 2.1874 1.8516 9.8763 2 Median NaN NaN NaN 0 0 Median 2.1874 1.8516 9.8763 2 0 Median 14066000 4556500 9509400 0 0 0 14066000 4556500 9509400 9050 1754 9260 23975;23976 37575;37576;37577;37578 37576 4 LSYTVHSSIDSISMR EILQIEATDRDEKHKLSYTVHSSIDSISMR LSYTVHSSIDSISMRKFRIDPSTGVLYTAE K L S M R K 0 1 0 1 0 0 0 0 1 2 1 0 1 0 0 5 1 0 1 1 0 0 15 0 1694.8298 E9PQ73;Q8TDW7 E9PQ73 1343 1357 FAT3 Protocadherin Fat 3 yes no 2;3 0.00081609 33.866 4 2 1.547 1.7687 16.243 6 Median 1.4858 1.6949 6.9838 4 0 Median 2.6648 2.2554 3.9132 2 0 Median 579440000 221570000 357870000 565070000 217940000 347140000 14368000 3636000 10733000 9051 1249 9261 23977;23978;23979;23980;23981;23982 37579;37580;37581;37582;37583;37584;37585;37586;37587;37588 37581 10 LSYVGNNFGTGALK PRKRNQRILAAETDRLSYVGNNFGTGALKC RLSYVGNNFGTGALKCNTLCRHFVGILNKT R L S L K C 1 0 2 0 0 0 0 3 0 0 2 1 0 1 0 1 1 0 1 1 0 0 14 0 1439.7409 Q9GZS1;E7EX70;B4DW33 Q9GZS1 129 142 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 2 6.1626E-05 91.313 2 0.83132 0.85349 6.924 2 Median 0.83132 0.85349 6.924 2 0 Median NaN NaN NaN 0 0 Median 28457000 14958000 13499000 28457000 14958000 13499000 0 0 0 9052 2022 9262 23983;23984 37589;37590 37590 2 LSYYGLR YETVQDILKEFFDLRLSYYGLRKEWLVGML LKEFFDLRLSYYGLRKEWLVGMLGAESTKL R L S L R K 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 2 0 0 0 7 0 870.45995 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6;H7BZ82 Q71UH4 1020 1026 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.044796 57.463 1 1.1519 0.95535 NaN 1 Median NaN NaN NaN 0 0 Median 1.1519 0.95535 NaN 1 0 Median 7791000 3592900 4198100 0 0 0 7791000 3592900 4198100 9053 1679 9263 23985 37591;37592 37591 2 LTADPGGSSETSSQVLENHTK LKSATAKGKKPSKERLTADPGGSSETSSQV GSSETSSQVLENHTKPKTSKGTKQEETFAK R L T T K P 1 0 1 1 0 1 2 2 1 0 2 1 0 0 1 4 3 0 0 1 0 0 21 0 2157.0186 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPJ1;D2CPJ9;D2CPI8 A0A024R2M8 339 359 XPC DNA repair protein complementing XP-C cells no no 3 9.7458E-12 95.206 2 2 0.73474 0.69603 10.942 4 Median 0.58025 0.64129 1.6474 2 0 Median 0.95917 0.77047 4.4327 2 0 Median 151220000 92404000 58813000 129050000 81388000 47660000 22169000 11016000 11153000 9054 118;1184 9264 23986;23987;23988;23989 37593;37594;37595;37596;37597;37598;37599;37600 37594 8 LTAEAIQTPLK EEAATADLDITEINKLTAEAIQTPLKSAKT EINKLTAEAIQTPLKSAKTRKVIQVDEMIV K L T L K S 2 0 0 0 0 1 1 0 0 1 2 1 0 0 1 0 2 0 0 0 0 0 11 0 1183.6812 Q53HL2;A8K7A2;B4DXT3 Q53HL2 99 109 CDCA8 Borealin yes no 2 7.2354E-23 167.12 2 2 1.3198 1.3135 11.085 4 Median 1.0436 1.2036 5.1897 2 0 Median 1.6965 1.4361 5.4428 2 0 Median 544390000 261070000 283320000 428260000 215000000 213260000 116130000 46068000 70063000 9055 1789 9265 23990;23991;23992;23993 37601;37602;37603;37604;37605;37606;37607;37608;37609 37601 9 LTAEDLFEAR IRQQGLASYDYVRRRLTAEDLFEARIISLE YVRRRLTAEDLFEARIISLETYNLLREGTR R L T A R I 2 1 0 1 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1163.5823 Q15149;D3DWL0;Q96IE3 Q15149 3784 3793 PLEC;PLEC1 Plectin yes no 2 4.0841E-12 145.72 2 2 1.9443 1.8722 2.4818 4 Median 1.685 1.8998 3.4032 2 0 Median 2.2128 1.8651 1.872 2 0 Median 212330000 74221000 138110000 200520000 70327000 130190000 11816000 3894600 7921500 9056 1754 9266 23994;23995;23996;23997 37610;37611;37612;37613;37614;37615;37616 37610 6 LTAEFEEAQTSACR WTEAILEDEQTQRQKLTAEFEEAQTSACRL KLTAEFEEAQTSACRLQEELEKLRTAGPLE K L T C R L 3 1 0 0 1 1 3 0 0 0 1 0 0 1 0 1 2 0 0 0 0 0 14 0 1611.7199 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;B3KSG1;A0A087WU26 A0A0A0MRV0 1311 1324 RRBP1 Ribosome-binding protein 1 yes no 2 0.00024168 63.408 2 0.99735 0.99637 0.36936 2 Median 0.99735 0.99637 0.36936 2 0 Median NaN NaN NaN 0 0 Median 17809000 8306000 9503400 17809000 8306000 9503400 0 0 0 9057 471 9267 23998;23999 37617;37618;37619 37618 3 LTAELIEQAAQYTNAVR ______________________________ AELIEQAAQYTNAVRDRELDLRGYKIPVIE K L T V R D 4 1 1 0 0 2 2 0 0 1 2 0 0 0 0 0 2 0 1 1 0 0 17 0 1889.9847 Q53G61;Q53G21;P09661;H0YKK0;Q6NVW9;Q9UEN1;O95485 Q53G61 4 20 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.00012829 57.106 2 1.1136 0.95349 3.567 2 Median NaN NaN NaN 0 0 Median 1.1136 0.95349 3.567 2 0 Median 8830400 3995400 4835000 0 0 0 8830400 3995400 4835000 9058 1461 9268 24000;24001 37620;37621 37621 2 LTAIDILTTCAADIQR KKPVIVFVPSRKQTRLTAIDILTTCAADIQ TAIDILTTCAADIQRQRFLHCTEKDLIPYL R L T Q R Q 3 1 0 2 1 1 0 0 0 3 2 0 0 0 0 0 3 0 0 0 0 0 16 0 1773.9295 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5 O75643 1571 1586 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 2.6335E-17 125.54 2 0.86692 0.90979 5.412 2 Median 0.86692 0.90979 5.412 2 0 Median NaN NaN NaN 0 0 Median 49656000 26345000 23312000 49656000 26345000 23312000 0 0 0 9059 1411 9269 24002;24003 37622;37623;37624;37625;37626;37627 37623 6 LTAIIEEAEEAPGAR EFGSGTLDLPALTRRLTAIIEEAEEAPGAR LTAIIEEAEEAPGARPQLQDAWRGPREPGP R L T A R P 4 1 0 0 0 0 4 1 0 2 1 0 0 0 1 0 1 0 0 0 0 0 15 0 1568.8046 A0A075B730;A0A087X1U6;P58107 A0A075B730 2546 2560 EPPK1 Epiplakin no no 2 3.6272E-16 127.87 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20390000 0 20390000 20390000 0 20390000 0 0 0 9060 397;1622 9270 24004;24005;24006 37628;37629;37630;37631 37628 4 LTAIIEEAEEAPGARPQLQDAWR EFGSGTLDLPALTRRLTAIIEEAEEAPGAR EEAPGARPQLQDAWRGPREPGPAGRGDGDS R L T W R G 5 2 0 1 0 2 4 1 0 2 2 0 0 0 2 0 1 1 0 0 0 0 23 1 2563.3031 A0A075B730;A0A087X1U6;P58107 A0A075B730 2546 2568 EPPK1 Epiplakin no no 3 2.4049E-09 73.405 2 2 1.8385 1.8142 24.992 4 Median 1.924 2.1517 4.4539 2 0 Median 1.6328 1.4313 13.846 2 0 Median 122600000 41710000 80886000 107560000 36768000 70792000 15036000 4941900 10094000 9061 397;1622 9271 24007;24008;24009;24010 37632;37633;37634;37635;37636;37637 37632 6 LTAQVEELSK KVLEERQRFQEERQKLTAQVEELSKKLADS EERQKLTAQVEELSKKLADSDQASKVQQQK K L T S K K 1 0 0 0 0 1 2 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1116.6027 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0 A0A024R5M9 1533 1542 NUMA1 yes no 2 0.00078545 81.263 2 2 1.85 1.4509 33.573 3 Median 1.0221 1.0358 NaN 1 0 Median 2.1746 1.715 23.649 2 0 Median 50954000 15200000 35754000 42772000 12850000 29921000 8182700 2349500 5833200 9062 186 9272 24011;24012;24013;24014 37638;37639;37640;37641;37642;37643;37644 37638 7 LTAQVEQLEVFQR KVLEERQRFQEERQKLTAQVEQLEVFQREQ QKLTAQVEQLEVFQREQTKQVEELSKKLAD K L T Q R E 1 1 0 0 0 3 2 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 13 0 1559.8308 Q4LE64;Q14980 Q4LE64 1539 1551 NUMA1 variant protein;NUMA1 Nuclear mitotic apparatus protein 1 yes no 2 1.0871E-05 97.734 1 2 1.2051 0.98426 6.8808 2 Median NaN NaN NaN 0 0 Median 1.2051 0.98426 6.8808 2 0 Median 37297000 13119000 24178000 7040400 0 7040400 30257000 13119000 17138000 9063 1747 9273 24015;24016;24017 37645;37646;37647;37648;37649 37645 5 LTATPTPLGGMTGFHMQTEDR PPPAGYVPIRTPARKLTATPTPLGGMTGFH PLGGMTGFHMQTEDRTMKSVNDQPSGNLPF K L T D R T 1 1 0 1 0 1 1 3 1 0 2 0 2 1 2 0 5 0 0 0 0 0 21 0 2260.0616 O75533;Q7Z497;A0JLT9;Q32Q20;A0PJH5 O75533 431 451 SF3B1 Splicing factor 3B subunit 1 yes no 3 5.0305E-05 49.973 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8748500 0 8748500 8748500 0 8748500 0 0 0 9064 1408 9274 24018 37650 37650 1086;1087 1 LTAYAMTIPFVR DKKISPKRDKGLVEKLTAYAMTIPFVRQQV VEKLTAYAMTIPFVRQQVYKKVEEKVRKQT K L T V R Q 2 1 0 0 0 0 0 0 0 1 1 0 1 1 1 0 2 0 1 1 0 0 12 0 1381.7428 E9KL44;P40939;B4DRH6;B4DDZ5 E9KL44 268 279 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.011199 45.368 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5906200 0 5906200 5906200 0 5906200 0 0 0 9065 1228 9275 24019 37651 37651 942 1 LTCLGVWLDK KVPPSLLCEINTNARLTCLGVWLDKVADMK NTNARLTCLGVWLDKVADMKESLPPAAEPS R L T D K V 0 0 0 1 1 0 0 1 0 0 3 1 0 0 0 0 1 1 0 1 0 0 10 0 1203.6322 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 296 305 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 0.0039245 62.303 2 2 1.0461 0.93446 15.01 4 Median 0.84682 0.87154 24.998 2 0 Median 1.1614 0.93446 1.5589 2 0 Median 59349000 27624000 31724000 46273000 22466000 23806000 13076000 5158100 7918000 9066 580 9276 24020;24021;24022;24023 37652;37653;37654;37655;37656 37653 5 LTDAQILTR IEPIQSRCAVLRYTKLTDAQILTRLMNVIE VLRYTKLTDAQILTRLMNVIEKERVPYTDD K L T T R L 1 1 0 1 0 1 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1029.5819 Q75MT5;B5BUD2;P35250;A0A087WVY3;H7C5P4 Q75MT5 159 167 RFC2 Replication factor C subunit 2 yes no 2 2.0923E-05 110.87 2 2 0.91595 0.87898 7.1572 3 Median 0.85109 0.87898 NaN 1 0 Median 0.99723 0.87805 10.121 2 0 Median 40897000 28795000 12101000 36689000 26778000 9911000 4207900 2017500 2190400 9067 1079 9277 24024;24025;24026;24027 37657;37658;37659;37660;37661 37658 5 LTDCVVMRDPASK TTEESLRNYYEQWGKLTDCVVMRDPASKRS GKLTDCVVMRDPASKRSRGFGFVTFSSMAE K L T S K R 1 1 0 2 1 0 0 0 0 0 1 1 1 0 1 1 1 0 0 2 0 0 13 1 1490.7221 P22626;A0A087WUI2;I6L957 P22626 47 59 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 3 0.0016598 59.227 2 4.6549 5.4135 NaN 1 Median 4.6549 5.4135 NaN 1 0 Median NaN NaN NaN 0 0 Median 72918000 6673600 66244000 72918000 6673600 66244000 0 0 0 9068 1508 9278 24028;24029 37662;37663;37664 37664 1277 3 LTDEQVALVR YWRTVQDPMTGRDLRLTDEQVALVRRLQSG GRDLRLTDEQVALVRRLQSGQFGDVGFNPY R L T V R R 1 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1142.6295 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;A0A075B729 Q14137 196 205 BOP1 Ribosome biogenesis protein BOP1 yes no 2 2.1517E-65 221.94 2 0.84183 0.98198 9.3969 2 Median 0.84183 0.98198 9.3969 2 0 Median NaN NaN NaN 0 0 Median 535160000 287250000 247910000 535160000 287250000 247910000 0 0 0 9069 1726 9279 24030;24031 37665;37666 37665 2 LTDFGFCAQITPEQSK IKSDNVLLGMEGSVKLTDFGFCAQITPEQS TDFGFCAQITPEQSKRSTMVGTPYWMAPEV K L T S K R 1 0 0 1 1 2 1 1 0 1 1 1 0 2 1 1 2 0 0 0 0 0 16 0 1840.8665 A8K5M4;Q9Y6B5;Q13177;H7C1X3;H0YCG5;B7Z302;E9PM17;B7Z3K0;B3KNX7;A0A024R5P0;A8KAN3;Q13153;Q59FN2;A0A087X294;B2RCU6;O75914 A8K5M4 384 399 PAK2;PAK1;PAK3 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 1;Serine/threonine-protein kinase PAK 3 yes no 2 0.00075287 58.098 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9070 750 9280 24032 37667 37667 1 LTDFGLSK LKPENILLDEEGHIKLTDFGLSKESIDHEK DEEGHIKLTDFGLSKESIDHEKKAYSFCGT K L T S K E 0 0 0 1 0 0 0 1 0 0 2 1 0 1 0 1 1 0 0 0 0 0 8 0 879.47018 B4DKZ2;B4DG22;B7ZB17;P51812;B1AXG1;B7Z2K7;Q9UK32;B3KU51;B4DMN4;E7ERL6;A0JLR0;B4DS23;B4DSE5;B4DKT8;E7EWQ5;J3QT34;O60307;Q9Y2H9;O15021;E9PGT3;Q15418;Q96GX5 B4DKZ2 180 187 RPS6KA3;RPS6KA6;MAST2;MAST4;MAST3;MAST1;RPS6KA1;MASTL Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6;Microtubule-associated serine/threonine-protein kinase 3;Microtubule-associated serine/threonine-protein kinase 1;Microtubule-associated serine/threonine-protein kinase 4;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Serine/threonine-protein kinase greatwall no no 2 0.034005 56.81 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8199600 0 8199600 8199600 0 8199600 0 0 0 9071 971;1235;1969 9281 24033 37668 37668 1 LTDFYPVR APRKKAQGKTQQNRKLTDFYPVRRSSRKSK KTQQNRKLTDFYPVRRSSRKSKAELQSEER K L T V R R 0 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 8 0 1009.5233 E3VVS3;A0A0C4DFR3;Q9NQR1;C9JKQ0 E3VVS3 151 158 SETD8 N-lysine methyltransferase SETD8 yes no 2 0.0078606 81.119 2 1 1.8996 2.0354 17.553 3 Median 1.8971 1.9954 2.8081 2 0 Median 3.0873 2.6991 NaN 1 0 Median 41050000 13137000 27913000 39650000 12668000 26982000 1399800 468570 931260 9072 505 9282 24034;24035;24036 37669;37670;37671 37669 3 LTDISVTDPEK ICGTLHSVDQYLNIKLTDISVTDPEKYPHM LNIKLTDISVTDPEKYPHMLSVKNCFIRGS K L T E K Y 0 0 0 2 0 0 1 0 0 1 1 1 0 0 1 1 2 0 0 1 0 0 11 0 1216.6187 Q9Y333 Q9Y333 40 50 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2 0.0005685 74.162 1 2.043 2.0311 NaN 1 Median 2.043 2.0311 NaN 1 0 Median NaN NaN NaN 0 0 Median 6202200 2348300 3853900 6202200 2348300 3853900 0 0 0 9073 2131 9283 24037 37672 37672 1 LTEEETVCLDLDK AILQTEDMLKVYEARLTEEETVCLDLDKVE ARLTEEETVCLDLDKVEAYRCGLKKIKNDL R L T D K V 0 0 0 2 1 0 3 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 13 0 1563.7338 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 791 803 DSP;DSP variant protein Desmoplakin yes no 2 0.0010991 77.062 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2828900 0 2828900 2828900 0 2828900 0 0 0 9074 1486 9284 24038;24039 37673;37674;37675 37675 3 LTEGCSFR GCSTVLCQPTGGKARLTEGCSFRRKQH___ PTGGKARLTEGCSFRRKQH___________ R L T F R R 0 1 0 0 1 0 1 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 8 0 968.43857 H0YMV8;Q71UM5;A4D1G5;C9J1C5;P42677 P42677 89 96 RPS27L;LOC392748;RPS27 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2 0.0010092 116.88 2 1 0.85889 1.005 17.989 3 Median 0.84857 0.99937 0.79863 2 0 Median 1.5634 1.3645 NaN 1 0 Median 1261000000 692090000 568950000 1175700000 658940000 516790000 85312000 33151000 52162000 9075 1298;1564 9285 24040;24041;24042 37676;37677;37678;37679;37680 37679 5 LTEGQGSEIQPGDLDPLSR QEGNNISSSSGHRVRLTEGQGSEIQPGDLD QGSEIQPGDLDPLSRGHETSGKGLEKTSLN R L T S R G 0 1 0 2 0 2 2 3 0 1 3 0 0 0 2 2 1 0 0 0 0 0 19 0 2010.9858 B9EGR5;Q8IWI9;H3BP52;H3BTF4;H3BTN2 B9EGR5 294 312 MGA MAX gene-associated protein yes no 2 0.015794 23.956 1 1.8912 1.6872 NaN 1 Median NaN NaN NaN 0 0 Median 1.8912 1.6872 NaN 1 0 Median 2330400 833390 1497000 0 0 0 2330400 833390 1497000 9076 1121 9286 24043 37681 37681 1 LTEIGPR VAGRGNMRAQQSAVRLTEIGPRMTLQLIKV RAQQSAVRLTEIGPRMTLQLIKVQEGVGEG R L T P R M 0 1 0 0 0 0 1 1 0 1 1 0 0 0 1 0 1 0 0 0 0 0 7 0 784.4443 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 272 278 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.023524 90.986 2 1 1.0822 1.2171 7.1239 3 Median 1.0688 1.2387 2.4923 2 0 Median 1.2874 1.0991 NaN 1 0 Median 438980000 206290000 232690000 418860000 197510000 221350000 20127000 8780500 11347000 9077 493 9287 24044;24045;24046 37682;37683;37684 37683 3 LTELLR LPKTYTIANQFPLNKLTELLRHDMAAAGST IANQFPLNKLTELLRHDMAAAGSTEALTFA K L T L R H 0 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 6 0 743.45414 B7ZB32;Q9BR63;A8K666;Q9NSD9;A0A087WUY5;Q5QPE5;B7Z476;Q53FH8;Q6P5V6;Q9Y5X3 B7ZB32 297 302 FARSB;SNX5 Phenylalanine--tRNA ligase beta subunit;Sorting nexin-5 yes no 2 0.029058 83.287 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9078 757 9288 24047 37685 37685 1 LTELMFEHYNIPAFFLCK LMSEAPWNTRAKREKLTELMFEHYNIPAFF LMFEHYNIPAFFLCKTAVLTAFANGRSTGL K L T C K T 1 0 1 0 1 0 2 0 1 1 3 1 1 3 1 0 1 0 1 0 0 0 18 0 2272.1061 Q6FI97;Q53FS0;O96019;H7C5S0 Q6FI97 136 153 BAF53A;ACTL6A Actin-like protein 6A yes no 3 1.0587E-05 60.549 1 1.1848 1.2018 NaN 1 Median 1.1848 1.2018 NaN 1 0 Median NaN NaN NaN 0 0 Median 5267500 2793400 2474100 5267500 2793400 2474100 0 0 0 9079 1434 9289 24048 37686;37687 37687 1129 2 LTELSGNPR SQIGIIVTKSKRAEKLTELSGNPRKHITSL SKRAEKLTELSGNPRKHITSLKKAVDMTCH K L T P R K 0 1 1 0 0 0 1 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 9 0 985.51926 R4GMS9;Q86U80;D6RJD3;B4DKI6;D6RID8;Q6P1K8;Q13888;B7ZW82 R4GMS9 99 107 GTF2H2;GTF2H2C General transcription factor IIH subunit 2-like protein;General transcription factor IIH subunit 2 yes no 2 0.011198 58.596 1 1.2851 1.1528 NaN 1 Median NaN NaN NaN 0 0 Median 1.2851 1.1528 NaN 1 0 Median 2277200 934750 1342400 0 0 0 2277200 934750 1342400 9080 989 9290 24049 37688 37688 1 LTEMETLQSQLMAEK ELVKVREKQLAAENRLTEMETLQSQLMAEK LTEMETLQSQLMAEKLQLQEQLQAETELCA R L T E K L 1 0 0 0 0 2 3 0 0 0 3 1 2 0 0 1 2 0 0 0 0 0 15 0 1750.8481 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 868 882 MYH9 Myosin-9 yes no 2 3.7827E-47 176.18 6 2.8869 3.0311 7.4123 4 Median 2.8869 3.0311 7.4123 4 0 Median NaN NaN NaN 0 0 Median 88861000 23604000 65257000 88861000 23604000 65257000 0 0 0 9081 81 9291 24050;24051;24052;24053;24054;24055 37689;37690;37691;37692;37693;37694 37689 65;66 6 LTEQLAGPLR LSCFVFQENSSEMPKLTEQLAGPLRQMQEC SEMPKLTEQLAGPLRQMQECAKRIAKVSAE K L T L R Q 1 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 1 0 0 0 0 0 10 0 1096.6241 P42285;A8K6I4;B4E3M6 P42285 924 933 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 1.1374E-05 104.2 2 2 0.97493 0.90526 3.7944 4 Median 0.88306 0.93021 0.28261 2 0 Median 1.0359 0.87282 1.5973 2 0 Median 70163000 33585000 36578000 59442000 28275000 31167000 10721000 5310100 5411200 9082 1563 9292 24056;24057;24058;24059 37695;37696;37697;37698;37699;37700;37701;37702 37695 8 LTETHLPAQAR PREFLQQQYRLFQTRLTETHLPAQARTSEP FQTRLTETHLPAQARTSEPLHNVQVLNQMI R L T A R T 2 1 0 0 0 1 1 0 1 0 2 0 0 0 1 0 2 0 0 0 0 0 11 0 1235.6622 A0JLU2;B4DYG2;O43683;A8K5A6 A0JLU2 147 157 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2;3 0.006292 63.816 3 0.78074 0.82836 NaN 1 Median 0.78074 0.82836 NaN 1 0 Median NaN NaN NaN 0 0 Median 30846000 20494000 10352000 30846000 20494000 10352000 0 0 0 9083 641 9293 24060;24061;24062 37703;37704;37705 37705 3 LTEVKDELEPLLELVEQGIIPPGK ESPELLELIEDLKVKLTEVKDELEPLLELV PLLELVEQGIIPPGKGSQYLRTKYNLYLNY K L T G K G 0 0 0 1 0 1 5 2 0 2 5 2 0 0 3 0 1 0 0 2 0 0 24 1 2658.4731 Q9NQZ2 Q9NQZ2 237 260 UTP3 Something about silencing protein 10 yes yes 3 1.8565E-16 80.102 1 1.0196 1.2037 NaN 1 Median 1.0196 1.2037 NaN 1 0 Median NaN NaN NaN 0 0 Median 51229000 23160000 28069000 51229000 23160000 28069000 0 0 0 9084 2063 9294 24063 37706 37706 0 LTEVQDDKEEEEEENPLLVPLEEK GVRGHQGLRDQKRMRLTEVQDDKEEEEEEN EEEEENPLLVPLEEKAVLQEEQANLWFSKG R L T E K A 0 0 1 2 0 1 9 0 0 0 4 2 0 0 2 0 1 0 0 2 0 0 24 1 2853.3655 Q8IY81;B4DKU3 Q8IY81 495 518 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 3 1.3001E-16 98.135 2 2 0.99953 0.99767 3.9812 4 Median 0.8746 1.0249 3.2574 2 0 Median 1.1469 0.97249 3.0627 2 0 Median 437510000 218020000 219490000 333810000 170700000 163110000 103700000 47323000 56378000 9085 1898 9295 24064;24065;24066;24067 37707;37708;37709;37710;37711;37712;37713;37714;37715;37716;37717;37718 37712 12 LTEVSISSDAFFPFR PELLTEAEKKEWVEKLTEVSISSDAFFPFR LTEVSISSDAFFPFRDNVDRAKRSGVAYIA K L T F R D 1 1 0 1 0 0 1 0 0 1 1 0 0 3 1 3 1 0 0 1 0 0 15 0 1714.8566 V9HWH7;B2R7P8;P31939;B4DP06;H7C1S2 V9HWH7 531 545 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 7.6454E-06 94.767 1 2.6282 2.65 NaN 1 Median 2.6282 2.65 NaN 1 0 Median NaN NaN NaN 0 0 Median 7777800 1763100 6014700 7777800 1763100 6014700 0 0 0 9086 852 9296 24068 37719 37719 1 LTFDSSFSPNTGK GTEITVEDQLARGLKLTFDSSFSPNTGKKN LKLTFDSSFSPNTGKKNAKIKTGYKREHIN K L T G K K 0 0 1 1 0 0 0 1 0 0 1 1 0 2 1 3 2 0 0 0 0 0 13 0 1399.662 A0A1L1UHR1;P21796;C9JI87 A0A1L1UHR1 97 109 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 2.3253E-13 128.01 2 2 1.9169 1.8666 8.4576 4 Median 1.709 2.0129 1.419 2 0 Median 2.1342 1.7401 0.67544 2 0 Median 768180000 272430000 495750000 716380000 255890000 460500000 51795000 16537000 35258000 9087 639 9297 24069;24070;24071;24072 37720;37721;37722;37723;37724;37725;37726;37727;37728 37720 9 LTFDSSFSPNTGKK GTEITVEDQLARGLKLTFDSSFSPNTGKKN KLTFDSSFSPNTGKKNAKIKTGYKREHINL K L T K K N 0 0 1 1 0 0 0 1 0 0 1 2 0 2 1 3 2 0 0 0 0 0 14 1 1527.7569 A0A1L1UHR1;P21796;C9JI87 A0A1L1UHR1 97 110 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2;3 0.00033929 77.062 1 1 1.7527 1.7672 8.6081 2 Median 1.3969 1.6628 NaN 1 0 Median 2.1992 1.8781 NaN 1 0 Median 37382000 10925000 26457000 22634000 6077800 16556000 14748000 4846800 9901100 9088 639 9298 24073;24074 37729;37730 37729 2 LTFDTTFSPNTGK GTEIAIEDQICQGLKLTFDTTFSPNTGKKS LKLTFDTTFSPNTGKKSGKIKSSYKRECIN K L T G K K 0 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 4 0 0 0 0 0 13 0 1427.6933 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;B4DKM5;Q5JSD2;Q5JSD1 A0A0A0MR02 108 120 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.0047052 60.434 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20043000 0 20043000 0 0 0 20043000 0 20043000 9089 28 9299 24075 37731 37731 1 LTFDTTFSPNTGKK GTEIAIEDQICQGLKLTFDTTFSPNTGKKS KLTFDTTFSPNTGKKSGKIKSSYKRECINL K L T K K S 0 0 1 1 0 0 0 1 0 0 1 2 0 2 1 1 4 0 0 0 0 0 14 1 1555.7882 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;B4DKM5;Q5JSD2;Q5JSD1 A0A0A0MR02 108 121 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 3 0.00083796 63.128 2 1 2.8274 2.8135 2.7867 2 Median 2.3811 2.7586 NaN 1 0 Median 3.3573 2.8695 NaN 1 0 Median 107200000 19319000 87879000 94656000 16572000 78083000 12541000 2746300 9795200 9090 28 9300 24076;24077;24078 37732;37733;37734 37732 2 LTFIPGFIGSLK EQLSGLKEFWMDANRLTFIPGFIGSLKQLT ANRLTFIPGFIGSLKQLTYLDVSKNNIEMV R L T L K Q 0 0 0 0 0 0 0 2 0 2 2 1 0 2 1 1 1 0 0 0 0 0 12 0 1291.754 B4DIP2;V9HW13;Q1RMC9;Q96RT1 B4DIP2 219 230 ERBB2IP;HEL-S-78 Protein LAP2 yes no 2 0.0018878 72.928 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3599000 0 3599000 3599000 0 3599000 0 0 0 9091 981 9301 24079;24080 37735;37736 37735 2 LTFSCLGGSDNFK VEDSKDVNVNFEKSKLTFSCLGGSDNFKHL SKLTFSCLGGSDNFKHLNEIDLFHCIDPND K L T F K H 0 0 1 1 1 0 0 2 0 0 2 1 0 2 0 2 1 0 0 0 0 0 13 0 1444.6657 A0A024RB32;A0A087WYT3;B3KUY2;Q15185 A0A024RB32 36 48 PTGES3 Prostaglandin E synthase 3 yes no 2 0.00013105 79.693 2 2 4.2487 4.0805 45.517 4 Median 5.4353 6.0187 4.9349 2 0 Median 3.4006 2.7464 5.9617 2 0 Median 127250000 27058000 100190000 109170000 21734000 87434000 18084000 5323800 12760000 9092 323 9302 24081;24082;24083;24084 37737;37738;37739;37740 37737 4 LTGDVLQPPGTSVPIVK CKYDSRDIFPAGWCRLTGDVLQPPGTSVPI GDVLQPPGTSVPIVKNIAKTESSPSEASQH R L T V K N 0 0 0 1 0 1 0 2 0 1 2 1 0 0 3 1 2 0 0 3 0 0 17 0 1719.9771 Q9UQR0;B4DZR9 Q9UQR0 232 248 SCML2 Sex comb on midleg-like protein 2 yes no 2 1.9557E-09 109.24 2 2 0.84138 0.75702 22.023 4 Median 0.62114 0.63678 5.102 2 0 Median 1.1476 0.92072 8.3249 2 0 Median 47671000 26036000 21636000 35420000 20120000 15301000 12251000 5916200 6334900 9093 2118 9303 24085;24086;24087;24088 37741;37742;37743;37744;37745;37746 37742 6 LTGEDVFGITVPLITSTTGAK DQLGNIMSGYEFINKLTGEDVFGITVPLIT FGITVPLITSTTGAKLGKSAGNAVWLNRDK K L T A K L 1 0 0 1 0 0 1 3 0 2 2 1 0 1 1 1 5 0 0 2 0 0 21 0 2119.1413 H0YHS6;Q9Y2Z4 H0YHS6 235 255 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 2 8.723E-05 39.509 2 1.9037 1.9486 4.3131 2 Median 1.9037 1.9486 4.3131 2 0 Median NaN NaN NaN 0 0 Median 26008000 8804300 17203000 26008000 8804300 17203000 0 0 0 9094 1293 9304 24089;24090 37747;37748;37749 37747 3 LTGEVVALK IGEGTYGVVYKARNKLTGEVVALKKIRLDT YKARNKLTGEVVALKKIRLDTETEGVPSTA K L T L K K 1 0 0 0 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 2 0 0 9 0 928.55933 A0A024RB10;A0A024RB77;G3V5T9;P24941;E7ESI2;B4DDL9;G3V317 A0A024RB10 25 33 CDK2 Cyclin-dependent kinase 2 yes no 2 0.046103 48.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10733000 0 10733000 10733000 0 10733000 0 0 0 9095 318 9305 24091 37750 37750 1 LTGFPYK VLDLDKSIKIVKKLKLTGFPYKIFKNTSFI IKIVKKLKLTGFPYKIFKNTSFIKGMFNSA K L T Y K I 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 0 0 0 7 0 824.44324 Q14692 Q14692 1029 1035 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.034211 62.714 2 0.93031 1.0287 7.2227 2 Median 0.93031 1.0287 7.2227 2 0 Median NaN NaN NaN 0 0 Median 105700000 53793000 51912000 105700000 53793000 51912000 0 0 0 9096 1742 9306 24092;24093 37751;37752 37751 2 LTGGSFTMK LCCLKLAFLDPDTGKLTGGSFTMKYHDMPD DPDTGKLTGGSFTMKYHDMPDVIDFLVLRQ K L T M K Y 0 0 0 0 0 0 0 2 0 0 1 1 1 1 0 1 2 0 0 0 0 0 9 0 940.4688 Q8WWQ0 Q8WWQ0 1033 1041 PHIP PH-interacting protein yes yes 2 0.0010161 76.827 2 1.0668 1.1744 0.051135 2 Median 1.0668 1.1744 0.051135 2 0 Median NaN NaN NaN 0 0 Median 99783000 45246000 54537000 99783000 45246000 54537000 0 0 0 9097 1942 9307 24094;24095 37753;37754;37755;37756 37753 1780 4 LTGMAFR AAKAVGKVIPELNGKLTGMAFRVPTANVSV VIPELNGKLTGMAFRVPTANVSVVDLTCRL K L T F R V 1 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 7 0 794.41089 V9HVZ4;P04406;Q2TSD0;Q0QET7;E7EUT5;A4UCT1;Q5ZEY3;A0A0K0K1K1;O14556 V9HVZ4 228 234 HEL-S-162eP;GAPDH;GAPD;GAPDHS Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific yes no 2 0.019881 52.683 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104550000 0 104550000 104550000 0 104550000 0 0 0 9098 1442 9308 24096;24097 37757;37758 37757 1144 2 LTGMERDLVAIEAKLSDLQK DLGNDLAGVMALQRKLTGMERDLVAIEAKL RDLVAIEAKLSDLQKEAEKLESEHPDQAQA K L T Q K E 2 1 0 2 0 1 2 1 0 1 4 2 1 0 0 1 1 0 0 1 0 0 20 2 2229.2039 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 912 931 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.043436 16.487 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4819200 4819200 0 0 0 0 4819200 4819200 0 9099 415 9309 24098 37759 37759 1 LTGSYNTMVGNNEGSMVLGLK PNGLDVTFEVTELRRLTGSYNTMVGNNEGS TMVGNNEGSMVLGLKLPNLLGRAEKVTFQF R L T L K L 0 0 3 0 0 0 1 4 0 0 3 1 2 0 0 2 2 0 1 2 0 0 21 0 2184.0555 Q9Y512 Q9Y512 128 148 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 7.4885E-05 48.112 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10849000 0 10849000 10849000 0 10849000 0 0 0 9100 2147 9310 24099 37760 37760 1985;1986 1 LTGVFAPR HLKRVAAPKHWMLDKLTGVFAPRPSTGPHK KHWMLDKLTGVFAPRPSTGPHKLRECLPLI K L T P R P 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 1 0 0 8 0 859.49159 B2R491;P62701;Q96IR1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;B7Z1M6;Q53HI6 B2R491 23 30 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 0.0018287 105.39 3 2 0.94166 0.95015 22.584 4 Median 0.9936 1.1621 2.3301 2 0 Median 0.90784 0.7865 0.58101 2 0 Median 702460000 356140000 346320000 607750000 308700000 299050000 94710000 47440000 47269000 9101 824 9311 24100;24101;24102;24103;24104 37761;37762;37763;37764;37765;37766;37767;37768;37769 37766 9 LTIAEER GNKPWISLPRGKGIRLTIAEERDKRLAAKQ LPRGKGIRLTIAEERDKRLAAKQSSG____ R L T E R D 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 830.44978 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47 B2R491 246 252 RPS4X;RPS4Y2 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2 0.0034854 134.44 2 2 1.0666 1.2872 28.073 4 Linear 1.0015 1.1767 12.182 2 0 Median 0.84859 0.73673 4.8202 2 0 Median 974650000 491880000 482760000 814290000 408840000 405450000 160350000 83042000 77311000 9102 824 9312 24105;24106;24107;24108 37770;37771;37772;37773;37774;37775;37776 37773 7 LTIAEERDK GNKPWISLPRGKGIRLTIAEERDKRLAAKQ RGKGIRLTIAEERDKRLAAKQSSG______ R L T D K R 1 1 0 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 1 1073.5717 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47 B2R491 246 254 RPS4X;RPS4Y2 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 3 0.0070208 54.982 1 1.0025 1.1354 NaN 1 Median 1.0025 1.1354 NaN 1 0 Median NaN NaN NaN 0 0 Median 16490000 8971800 7518000 16490000 8971800 7518000 0 0 0 9103 824 9313 24109 37777 37777 1 LTIAFQAK EAEDGIIAYDDCGVKLTIAFQAKDVEGSTS YDDCGVKLTIAFQAKDVEGSTSPQIGDKVE K L T A K D 2 0 0 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 8 0 890.52255 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 437 444 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 0.0078194 81.297 1 1 2.6829 2.5863 25.834 2 Median 2.8045 3.1047 NaN 1 0 Median 2.5665 2.1545 NaN 1 0 Median 47233000 11663000 35570000 45732000 11222000 34510000 1501200 441100 1060100 9104 42 9314 24110;24111 37778;37779;37780;37781 37779 4 LTIGSNLSIR VFKKIERHSIHWPCRLTIGSNLSIRIAAYK HWPCRLTIGSNLSIRIAAYKSILQERVKKT R L T I R I 0 1 1 0 0 0 0 1 0 2 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1072.6241 P13010;Q53T09 P13010 251 260 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.00016057 95.358 2 2 0.3132 0.31588 22.33 4 Median 0.32634 0.38316 3.8083 2 0 Median 0.30274 0.26115 3.4091 2 0 Median 884460000 668440000 216020000 765200000 578680000 186520000 119260000 89760000 29503000 9105 1476 9315 24112;24113;24114;24115 37782;37783;37784;37785;37786;37787;37788;37789 37784 8 LTIPILYVK PETVYRVARHFTKAKLTIPILYVKVYMYQL HFTKAKLTIPILYVKVYMYQLFRSLAYIHS K L T V K V 0 0 0 0 0 0 0 0 0 2 2 1 0 0 1 0 1 0 1 1 0 0 9 0 1058.674 Q68D16;A8MT37;A0A024R0L5;P49840;M0QYV0 Q68D16 119 127 DKFZp686D0638;GSK3A Glycogen synthase kinase-3 alpha yes no 2 0.047451 47.849 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1696900 0 1696900 1696900 0 1696900 0 0 0 9106 51 9316 24116 37790 37790 1 LTIQANLNR ANGRCLLAALTMDNRLTIQANLNRLQWVQL LTMDNRLTIQANLNRLQWVQLVDLTEIYGE R L T N R L 1 1 2 0 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1041.5931 Q9UKN8;Q05CN7 Q9UKN8 191 199 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.0003362 101.64 1 0.92437 1.0137 NaN 1 Median 0.92437 1.0137 NaN 1 0 Median NaN NaN NaN 0 0 Median 40133000 22540000 17593000 40133000 22540000 17593000 0 0 0 9107 2107 9317 24117 37791 37791 1 LTISSPLEAHK EQKLVYILNRDAAARLTISSPLEAHKANTL AAARLTISSPLEAHKANTLVYHVVGVDVGF R L T H K A 1 0 0 0 0 0 1 0 1 1 2 1 0 0 1 2 1 0 0 0 0 0 11 0 1194.6608 A8K6V3;Q15393 A8K6V3 152 162 SF3B3 Splicing factor 3B subunit 3 yes no 3 0.0078955 37.613 2 1.3027 1.3381 1.2785 2 Median 1.3027 1.3381 1.2785 2 0 Median NaN NaN NaN 0 0 Median 46569000 19558000 27011000 46569000 19558000 27011000 0 0 0 9108 764 9318 24118;24119 37792;37793;37794 37793 3 LTITSNPEMTFPGER GTDVGQTKAAQALAKLTITSNPEMTFPGER LTITSNPEMTFPGERIYEVVRPLVSLLHLN K L T E R I 0 1 1 0 0 0 2 1 0 1 1 0 1 1 2 1 3 0 0 0 0 0 15 0 1691.8189 Q9H3U1 Q9H3U1 715 729 UNC45A Protein unc-45 homolog A yes yes 2 0.0020066 53.967 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9109 2029 9319 24120;24121 37795;37796 37796 1869 2 LTLADLR LAKQVLSGSGESVTKLTLADLRVLFGI___ GSGESVTKLTLADLRVLFGI__________ K L T L R V 1 1 0 1 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 800.4756 A0A024R0F1;Q9UNY4;X6RI15 A0A024R0F1 1151 1157 TTF2 Transcription termination factor 2 yes no 2 0.052116 57.281 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5657700 5657700 0 5657700 5657700 0 0 0 0 9110 44 9320 24122 37797 37797 1 LTLDTIFVPNTGK GTEISWENKLAEGLKLTLDTIFVPNTGKKS LKLTLDTIFVPNTGKKSGKLKASYKRDCFS K L T G K K 0 0 1 1 0 0 0 1 0 1 2 1 0 1 1 0 3 0 0 1 0 0 13 0 1417.7817 Q9Y277;E5RJN6;E5RHZ6;E5RK27;E5RFP6 Q9Y277 97 109 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2 3.1185E-30 168.3 2 2 2.135 2.0385 14.164 4 Median 1.5924 1.8075 0.70863 2 0 Median 2.918 2.309 1.3205 2 0 Median 332910000 123410000 209500000 301740000 115080000 186660000 31170000 8329300 22841000 9111 2124 9321 24123;24124;24125;24126 37798;37799;37800;37801;37802;37803;37804 37801 7 LTLEDLEDSWDR EYALKRQEAIAQNRRLTLEDLEDSWDRGIP NRRLTLEDLEDSWDRGIPRINTLFQKDRHT R L T D R G 0 1 0 3 0 0 2 0 0 0 3 0 0 0 0 1 1 1 0 0 0 0 12 0 1490.6889 Q6P2Q9;B4DK16;I3L3Z8 Q6P2Q9 1403 1414 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00021727 82.261 1 0.83427 0.84377 NaN 1 Median 0.83427 0.84377 NaN 1 0 Median NaN NaN NaN 0 0 Median 9632500 5784400 3848000 9632500 5784400 3848000 0 0 0 9112 1854 9322 24127 37805 37805 1 LTLHGLQQYYVK FMQDPMEVFVDDETKLTLHGLQQYYVKLKD ETKLTLHGLQQYYVKLKDSEKNRKLFDLLD K L T V K L 0 0 0 0 0 2 0 1 1 0 3 1 0 0 0 0 1 0 2 1 0 0 12 0 1461.798 A0A024RCM3;Q13838;A0A0G2JJZ9;Q5STU3;F6WLT2;B4DP52;A0A140T9X3;A0A140T996;A0A140T9X9;F6UJC5;A0A140TA18;H0Y400;H0YCC6;O00148;B4DX78;Q69YT6 O00148 256 267 hCG_2005638;DDX39B;DDX39A;DKFZp547B159 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 3 5.9084E-05 77.124 2 1 1.5324 1.7145 54.907 3 Plateau 1.5021 1.6843 2.5079 2 0 Median 0.83713 0.65105 NaN 1 0 Median 194200000 78974000 115230000 178770000 70712000 108060000 15433000 8261400 7171800 9113 1359;362 9323 24128;24129;24130 37806;37807;37808 37806 3 LTLISEDIK QKEEKEMIFEDTNLKLTLISEDIKSYYTVR EDTNLKLTLISEDIKSYYTVRQLELENLTT K L T I K S 0 0 0 1 0 0 1 0 0 2 2 1 0 0 0 1 1 0 0 0 0 0 9 0 1030.591 A8K3M3;P18031;B4DSN5 A8K3M3 142 150 PTPN1 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 1 yes no 2 0.008633 60.91 2 1 1.1189 1.1349 52.811 3 Plateau 1.0943 1.1445 1.1885 2 0 Median 0.55969 0.45856 NaN 1 0 Median 52039000 29584000 22455000 49501000 27956000 21545000 2537900 1628000 909960 9114 724 9324 24131;24132;24133 37809;37810;37811;37812;37813;37814;37815 37812 7 LTLLNPK AYIADLDAKSGASLKLTLLNPKGRIWTMVA AKSGASLKLTLLNPKGRIWTMVAGGGASVV K L T P K G 0 0 1 0 0 0 0 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 7 0 797.50109 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396 A0A024R1Y2 266 272 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.014517 86.086 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9115 89 9325 24134 37816 37816 1 LTLLQVASR QNQQLLRENEIIKQKLTLLQVASRQKHLPK EIIKQKLTLLQVASRQKHLPKDTLLSPDSS K L T S R Q 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 9 0 999.60768 Q59HG1;O95239;B3KNC0 Q59HG1 997 1005 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 4.9102E-08 145.16 2 2 1.1678 1.1399 16.132 4 Median 0.85991 0.98041 5.7402 2 0 Median 1.5339 1.2881 1.7141 2 0 Median 254460000 125000000 129460000 212950000 109950000 103010000 41509000 15055000 26453000 9116 1803 9326 24135;24136;24137;24138 37817;37818;37819;37820;37821;37822;37823 37817 7 LTLPHSIR MVVLWKIPSKELRVRLTLPHSIRSDSEDIC SKELRVRLTLPHSIRSDSEDICLFTKDEPN R L T I R S 0 1 0 0 0 0 0 0 1 1 2 0 0 0 1 1 1 0 0 0 0 0 8 0 935.55525 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 82 89 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 0.0026473 91.9 3 4 0.66989 0.6215 13.619 7 Median 0.64748 0.76637 0.82858 3 0 Median 0.6929 0.59583 4.3229 4 0 Median 1425900000 861630000 564240000 1200400000 726940000 473490000 225440000 134690000 90746000 9117 1415 9327 24139;24140;24141;24142;24143;24144;24145 37824;37825;37826;37827;37828;37829;37830;37831;37832;37833;37834;37835 37825 12 LTLSALLDGK LIGLGYTQTLKPGIKLTLSALLDGKNVNAG KPGIKLTLSALLDGKNVNAGGHKLGLGLEF K L T G K N 1 0 0 1 0 0 0 1 0 0 4 1 0 0 0 1 1 0 0 0 0 0 10 0 1029.607 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 257 266 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 1;2 3.8375E-08 118.18 8 5 1.5528 1.758 13.075 9 Median 1.513 1.758 10.861 7 0 Median 2.3354 1.8845 21.368 2 0 Median 1120300000 435240000 685020000 1064900000 413590000 651270000 55407000 21650000 33757000 9118 639 9328 24146;24147;24148;24149;24150;24151;24152;24153;24154;24155;24156;24157;24158 37836;37837;37838;37839;37840;37841;37842;37843;37844;37845;37846;37847;37848;37849;37850;37851;37852;37853;37854;37855;37856 37838 19 LTLSALVDGK LIGVGYTQTLRPGVKLTLSALVDGKSINAG RPGVKLTLSALVDGKSINAG__________ K L T G K S 1 0 0 1 0 0 0 1 0 0 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1015.5914 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;B4DKM5 A0A0A0MR02 268 277 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.00013082 96.331 2 2 2.5487 2.5144 3.7386 4 Median 2.1314 2.5144 2.4295 2 0 Median 3.0705 2.5627 5.6927 2 0 Median 983420000 295960000 687460000 896340000 274610000 621730000 87083000 21355000 65728000 9119 28 9329 24159;24160;24161;24162 37857;37858;37859;37860;37861;37862;37863;37864;37865 37860 9 LTLTSR CHPKIVNALKSQVDKLTLTSRAFYNNVLGE NALKSQVDKLTLTSRAFYNNVLGEYEEYIT K L T S R A 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 2 0 0 0 0 0 6 0 689.40719 A0A140VJQ4;P04181 A0A140VJQ4 108 113 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes no 2 0.0043028 142.63 2 1.2303 1.4232 8.5385 2 Median 1.2303 1.4232 8.5385 2 0 Median NaN NaN NaN 0 0 Median 304830000 142470000 162360000 304830000 142470000 162360000 0 0 0 9120 607 9330 24163;24164 37866;37867 37867 2 LTMQVSSLQR SLIVEGKREKKKVERLTMQVSSLQREPFTI KKVERLTMQVSSLQREPFTIAQGKGQKLCE R L T Q R E 0 1 0 0 0 2 0 0 0 0 2 0 1 0 0 2 1 0 0 1 0 0 10 0 1161.6176 B4DNW3;P35659;D6R9L5 P35659 66 75 DEK Protein DEK no no 2 1.5049E-12 146.88 4 6 0.84066 0.83481 26.994 9 Median 0.84066 0.96765 7.4513 3 0 Plateau 0.90197 0.76743 28.281 6 0 Median 586530000 333690000 252840000 460600000 260120000 200480000 125930000 73571000 52361000 9121 1546;1018 9331;9332 24165;24166;24167;24168;24169;24170;24171;24172;24173;24174 37868;37869;37870;37871;37872;37873;37874;37875;37876;37877;37878;37879;37880;37881;37882;37883;37884 37871 806 17 LTNAGYDYLALK KLIAWERTKTVQGYRLTNAGYDYLALKTLS GYRLTNAGYDYLALKTLSSRQVVESVGNQM R L T L K T 2 0 1 1 0 0 0 1 0 0 3 1 0 0 0 0 1 0 2 0 0 0 12 0 1340.6976 Q9BVS4 Q9BVS4 75 86 RIOK2 Serine/threonine-protein kinase RIO2 yes yes 2 0.0027351 67.726 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9122 2010 9333 24175;24176 37885;37886 37885 2 LTPEEEEILNK ESHYALPLGRKKGAKLTPEEEEILNKKRSK KGAKLTPEEEEILNKKRSKKIQKKYDERKK K L T N K K 0 0 1 0 0 0 4 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1313.6715 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 129 139 RPS8 40S ribosomal protein S8 yes no 2 3.0806E-10 133.13 4 3 0.83601 0.91425 7.7787 4 Linear 0.76316 0.91002 2.7209 2 0 Median 0.90735 0.79841 1.7168 2 0 Median 3221800000 1805600000 1416200000 2491900000 1431900000 1060000000 729920000 373720000 356200000 9123 1635 9334 24177;24178;24179;24180;24181;24182;24183 37887;37888;37889;37890;37891;37892;37893;37894;37895;37896;37897;37898;37899;37900;37901;37902;37903;37904;37905;37906;37907;37908;37909 37895 23 LTPEEEEILNKK ESHYALPLGRKKGAKLTPEEEEILNKKRSK GAKLTPEEEEILNKKRSKKIQKKYDERKKN K L T K K R 0 0 1 0 0 0 4 0 0 1 2 2 0 0 1 0 1 0 0 0 0 0 12 1 1441.7664 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 129 140 RPS8 40S ribosomal protein S8 yes no 2;3 0.00042439 60.49 3 3 0.84431 0.79722 12.864 6 Median 0.79726 0.94065 6.7975 3 0 Median 0.87556 0.74273 1.3639 3 0 Plateau 380290000 200540000 179740000 272090000 144220000 127880000 108190000 56328000 51866000 9124 1635 9335 24184;24185;24186;24187;24188;24189 37910;37911;37912;37913;37914;37915;37916;37917 37910 8 LTPLGYHLASLPVDVR KIRLRDLGALTPDERLTPLGYHLASLPVDV TPLGYHLASLPVDVRIGKLMLFGSIFRCLD R L T V R I 1 1 0 1 0 0 0 1 1 0 4 0 0 0 2 1 1 0 1 2 0 0 16 0 1749.9778 Q6P158;Q59G60;H7C109 Q6P158 1052 1067 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 0.00051379 44.196 2 1.4391 1.2128 17.15 2 Median NaN NaN NaN 0 0 Median 1.4391 1.2128 17.15 2 0 Median 6577000 3042300 3534700 0 0 0 6577000 3042300 3534700 9125 1850 9336 24190;24191 37918;37919;37920;37921;37922 37920 5 LTPLSHEVISR PHLSRQDLTTLDVTKLTPLSHEVISRQATI DVTKLTPLSHEVISRQATINIGTIGHVAHG K L T S R Q 0 1 0 0 0 0 1 0 1 1 2 0 0 0 1 2 1 0 0 1 0 0 11 0 1250.6983 P41091;Q2VIR3;F8W810;H7BZU1 P41091 28 38 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 2.285E-05 86.313 1 1.8879 1.9171 NaN 1 Median 1.8879 1.9171 NaN 1 0 Median NaN NaN NaN 0 0 Median 29133000 9749400 19384000 29133000 9749400 19384000 0 0 0 9126 1559 9337 24192 37923;37924 37924 2 LTPLTVLLR KREQVKVEQVAMELRLTPLTVLLRSVLDQL VAMELRLTPLTVLLRSVLDQLQDKDPARIF R L T L R S 0 1 0 0 0 0 0 0 0 0 4 0 0 0 1 0 2 0 0 1 0 0 9 0 1024.6645 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41;B7Z926;Q59G93;Q9Y4Q3;B4DZC2 A0A024R4W4 564 572 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.00079176 94.302 2 2 1.3304 1.2134 29.526 4 Median 0.93459 0.94389 1.787 2 0 Median 1.8684 1.5723 2.909 2 0 Median 58528000 27673000 30855000 47606000 23810000 23796000 10922000 3862800 7059000 9127 162 9338 24193;24194;24195;24196 37925;37926;37927;37928;37929;37930;37931;37932 37926 8 LTPSGYEWGR TCSFTPGSCTLTAYKLTPSGYEWGRQNTDK LTAYKLTPSGYEWGRQNTDKGNNPKGYLPS K L T G R Q 0 1 0 0 0 0 1 2 0 0 1 0 0 0 1 1 1 1 1 0 0 0 10 0 1164.5564 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2230 2239 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0010607 76.827 2 2.0701 2.3512 NaN 1 Median 2.0701 2.3512 NaN 1 0 Median NaN NaN NaN 0 0 Median 57931000 30245000 27686000 57931000 30245000 27686000 0 0 0 9128 1854 9339 24197;24198 37933;37934 37934 2 LTPTSVLDYFGTGSVQR EENTKTKNKPLSPIKLTPTSVLDYFGTGSV PTSVLDYFGTGSVQRSNKKMVASKRKELSQ K L T Q R S 0 1 0 1 0 1 0 2 0 0 2 0 0 1 1 2 3 0 1 2 0 0 17 0 1839.9367 P35251;Q14756 P35251 160 176 RFC1;LLDBP Replication factor C subunit 1 yes no 2 0.00017982 51.774 2 2 0.6439 0.57891 4.8385 3 Median 0.55193 0.57891 NaN 1 0 Median 0.66412 0.55796 6.1457 2 0 Median 28023000 14711000 13313000 17052000 7855900 9195900 10971000 6854800 4116600 9129 1542 9340 24199;24200;24201;24202 37935;37936;37937;37938 37935 4 LTPVPDSFFAK GDARNKRQRNPRYEKLTPVPDSFFAKHLQT RYEKLTPVPDSFFAKHLQTGENHTSVDPRQ K L T A K H 1 0 0 1 0 0 0 0 0 0 1 1 0 2 2 1 1 0 0 1 0 0 11 0 1220.6441 O94906 O94906 179 189 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.038119 36.334 1 0.80905 0.83687 NaN 1 Median 0.80905 0.83687 NaN 1 0 Median NaN NaN NaN 0 0 Median 18565000 10295000 8270100 18565000 10295000 8270100 0 0 0 9130 1418 9341 24203 37939 37939 1 LTPVRPAAASPIVSGAR TIPITKPHTMKPAPRLTPVRPAAASPIVSG PVRPAAASPIVSGARRRRVRCRKCKACVQG R L T A R R 4 2 0 0 0 0 0 1 0 1 1 0 0 0 3 2 1 0 0 2 0 0 17 1 1661.9577 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 532 548 KDM2A Lysine-specific demethylase 2A yes no 3 0.00022271 47.568 2 1 0.54013 0.58502 23.291 3 Median 0.5876 0.63645 11.916 2 0 Median 0.48331 0.43694 NaN 1 0 Median 44328000 26353000 17975000 41131000 24261000 16870000 3197300 2092400 1104800 9131 1323 9342 24204;24205;24206 37940;37941;37942 37941 3 LTPVSPESSSTEEK IEVDIDVEHGGKRSRLTPVSPESSSTEEKS RLTPVSPESSSTEEKSSSQPSSCCSDPSKP R L T E K S 0 0 0 0 0 0 3 0 0 0 1 1 0 0 2 4 2 0 0 1 0 0 14 0 1489.7148 Q13501;B4E3V2;E7EMC7 Q13501 268 281 SQSTM1 Sequestosome-1 yes no 2 0.00015006 96.229 2 2 3.4299 3.1125 42.603 2 Median 4.1855 4.2066 NaN 1 0 Median 2.8106 2.3029 NaN 1 0 Median 40262000 6654700 33607000 36074000 5919800 30154000 4188200 734900 3453300 9132 1714 9343 24207;24208;24209;24210 37943;37944;37945;37946;37947;37948 37944 6 LTPWEQFLEK SAEEMVKNKLEGKDKLTPWEQFLEKKKEKK EGKDKLTPWEQFLEKKKEKKRLKRKQKALA K L T E K K 0 0 0 0 0 1 2 0 0 0 2 1 0 1 1 0 1 1 0 0 0 0 10 0 1289.6656 Q9H501;A0JLU5;A0A087WX71 Q9H501 629 638 ESF1 ESF1 homolog yes no 2 0.0088105 55.567 1 0.65002 0.65293 NaN 1 Median 0.65002 0.65293 NaN 1 0 Median NaN NaN NaN 0 0 Median 5170000 3078300 2091600 5170000 3078300 2091600 0 0 0 9133 2033 9344 24211 37949 37949 1 LTQDLFGTGGNTTGK DMMATLAKSQVTTVKLTQDLFGTGGNTTGK LTQDLFGTGGNTTGKGISATLHVTSNPVHA K L T G K G 0 0 1 1 0 1 0 4 0 0 2 1 0 1 0 0 4 0 0 0 0 0 15 0 1508.7471 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 990 1004 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.00049803 60.628 1 2 1.2386 1.119 33.158 2 Median 0.85728 0.88509 NaN 1 0 Median 1.7895 1.4146 NaN 1 0 Median 16267000 7282000 8984600 11468000 6235800 5232000 4798900 1046200 3752700 9134 135 9345 24212;24213;24214 37950;37951;37952;37953 37950 4 LTQEETNFK QTEQELKEKEKELQKLTQEETNFKSLVHDL EKELQKLTQEETNFKSLVHDLFQKVEEAKS K L T F K S 0 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 9 0 1108.5401 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 565 573 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.0008E-18 175.44 2 2 1.2698 1.2627 22.954 4 Median 0.88332 1.035 2.2438 2 0 Median 1.8066 1.5385 2.0463 2 0 Median 788480000 394440000 394040000 653580000 347090000 306480000 134900000 47350000 87552000 9135 2070 9346 24215;24216;24217;24218 37954;37955;37956;37957;37958;37959;37960;37961 37955 8 LTQELQQAK SFQTLDQECIQMKARLTQELQQAKNMHNVL IQMKARLTQELQQAKNMHNVLQAELDKLTS R L T A K N 1 0 0 0 0 3 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1057.5768 P49454 P49454 421 429 CENPF Centromere protein F yes yes 2 5.7462E-05 103.74 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7435500 7435500 0 7435500 7435500 0 0 0 0 9136 1581 9347 24219;24220 37962;37963 37963 2 LTQEQVSDSQVLIR MIRHYVSILLQSDKKLTQEQVSDSQVLIRS KLTQEQVSDSQVLIRSRVLRENGKYIPKQS K L T I R S 0 1 0 1 0 3 1 0 0 1 2 0 0 0 0 2 1 0 0 2 0 0 14 0 1614.8577 Q9P0I2;S4R3U9 Q9P0I2 44 57 EMC3 ER membrane protein complex subunit 3 yes no 2 0.00016066 74.962 2 0.5844 0.59817 9.4787 2 Median 0.5844 0.59817 9.4787 2 0 Median NaN NaN NaN 0 0 Median 28185000 18053000 10132000 28185000 18053000 10132000 0 0 0 9137 2092 9348 24221;24222 37964;37965 37965 2 LTQILSYLR EAQTTLTTNDIVISKLTQILSYLRQGTRNK DIVISKLTQILSYLRQGTRNKKLKKKDKGK K L T L R Q 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 1 0 0 0 9 0 1105.6495 Q9UK43;Q95HA6;B2R5Y4;Q13123;B4DEH2 Q9UK43 282 290 CSA2;IK Protein Red yes no 2 0.00028282 103.55 2 2 0.77919 0.7227 33.061 4 Median 0.94367 0.95951 11.124 2 0 Median 0.65044 0.5514 9.3016 2 0 Median 26629000 13523000 13106000 20397000 10148000 10248000 6231900 3374700 2857100 9138 838 9349 24223;24224;24225;24226 37966;37967;37968;37969;37970 37966 5 LTQTSGETTHTDKEPVGEGK AQKVEVKEELLAVGKLTQTSGETTHTDKEP GETTHTDKEPVGEGKGTKAFKQPAKRKLDA K L T G K G 0 0 0 1 0 1 3 3 1 0 1 2 0 0 1 1 5 0 0 1 0 0 20 1 2114.0128 P46013 P46013 2861 2880 MKI67 Antigen KI-67 yes yes 2;3;4 1.5263E-141 244.46 6 4 1.9005 2.2431 14.018 10 Median 1.7098 1.9833 8.3491 6 0 Median 3.012 2.5642 3.041 4 0 Median 815520000 244480000 571040000 366900000 130450000 236450000 448620000 114030000 334600000 9139 1569 9350 24227;24228;24229;24230;24231;24232;24233;24234;24235;24236 37971;37972;37973;37974;37975;37976;37977;37978;37979;37980;37981;37982;37983;37984;37985;37986 37971 16 LTQTSGETTHTDKVPGGEDK LEKRDVQKELSALKKLTQTSGETTHTDKVP GETTHTDKVPGGEDKSINAFRETAKQKLDP K L T D K S 0 0 0 2 0 1 2 3 1 0 1 2 0 0 1 1 5 0 0 1 0 0 20 1 2099.9971 P46013 P46013 1410 1429 MKI67 Antigen KI-67 yes yes 3;4 3.4413E-09 68.49 3 3.3953 2.8994 12.217 3 Median NaN NaN NaN 0 0 Median 3.3953 2.8994 12.217 3 0 Median 37581000 8253100 29328000 0 0 0 37581000 8253100 29328000 9140 1569 9351 24237;24238;24239 37987;37988;37989;37990 37987 4 LTQTSGETTHTHTEPTGDGK LGKVGVKEELLAVGKLTQTSGETTHTHTEP GETTHTHTEPTGDGKSMKAFMESPKQILDS K L T G K S 0 0 0 1 0 1 2 3 2 0 1 1 0 0 1 1 7 0 0 0 0 0 20 0 2096.9611 P46013 P46013 1652 1671 MKI67 Antigen KI-67 yes yes 2;3;4 5.162E-141 239.86 5 4 1.8392 2.0821 20.182 9 Median 1.7509 2.0554 5.3723 5 0 Median 3.4497 2.9115 5.1224 4 0 Median 1318500000 429140000 889370000 961530000 348730000 612800000 356990000 80411000 276570000 9141 1569 9352 24240;24241;24242;24243;24244;24245;24246;24247;24248 37991;37992;37993;37994;37995;37996;37997;37998;37999;38000;38001;38002;38003;38004 37995 14 LTQTSGQSTHTHKEPASGDEGIK RPRKEVKEELSAVERLTQTSGQSTHTHKEP THTHKEPASGDEGIKVLKQRAKKKPNPVEE R L T I K V 1 0 0 1 0 2 2 3 2 1 1 2 0 0 1 3 4 0 0 0 0 0 23 1 2408.1568 P46013 P46013 2622 2644 MKI67 Antigen KI-67 yes yes 4 0.0078396 21.841 2 3.3634 2.9122 13.965 2 Median NaN NaN NaN 0 0 Median 3.3634 2.9122 13.965 2 0 Median 2272600 518950 1753700 0 0 0 2272600 518950 1753700 9142 1569 9353 24249;24250 38005;38006 38006 2 LTQVLNTHYVAPR MIVDEGHRMKNHHCKLTQVLNTHYVAPRRL CKLTQVLNTHYVAPRRLLLTGTPLQNKLPE K L T P R R 1 1 1 0 0 1 0 0 1 0 2 0 0 0 1 0 2 0 1 2 0 0 13 0 1510.8256 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8;B3KNW7;P51531;A0A0U1RQZ9;B4DK35;B4DSC8 A7E2E1 893 905 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2;3 1.2926E-05 96.229 3 2 1.4663 1.4325 25.06 4 Median 0.99469 1.1313 36.423 2 0 Median 1.7011 1.4325 0.35921 2 0 Median 232890000 115310000 117580000 216390000 109410000 106980000 16502000 5901700 10600000 9143 695;1595 9354 24251;24252;24253;24254;24255 38007;38008;38009;38010;38011;38012;38013;38014 38010 8 LTSADALRPSVVSITGPLIR EQKEEAAKALGLVIRLTSADALRPSVVSIT ALRPSVVSITGPLIRILGDRFSWNVKAALL R L T I R I 2 2 0 1 0 0 0 1 0 2 3 0 0 0 2 3 2 0 0 2 0 0 20 1 2065.1895 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2293 2312 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 2.3353E-10 99.407 2 1 1.8392 2.0549 39.772 3 Plateau 1.8114 2.0116 8.9173 2 0 Median 1.1584 1.0189 NaN 1 0 Median 77720000 28258000 49463000 73456000 26318000 47138000 4264400 1939800 2324600 9144 1205 9355 24256;24257;24258 38015;38016;38017;38018 38017 3 LTSDSTVYDYAGK VSTEAPPIIFATPTKLTSDSTVYDYAGKNK TKLTSDSTVYDYAGKNKVPELQKFFQVRED K L T G K N 1 0 0 2 0 0 0 1 0 0 1 1 0 0 0 2 2 0 2 1 0 0 13 0 1418.6565 E5RJZ1;H0YBD2;Q6FGA0;O14548 E5RJZ1 45 57 COX7A2L Cytochrome c oxidase subunit 7A-related protein, mitochondrial yes no 2 0.00024023 88.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10630000 0 10630000 10630000 0 10630000 0 0 0 9145 1216 9356 24259 38019 38019 1 LTSEPEGDWFCPECEK CCELCPRVYHAKCLRLTSEPEGDWFCPECE TSEPEGDWFCPECEKITVAECIETQSKAMT R L T E K I 0 0 0 1 2 0 4 1 0 0 1 1 0 1 2 1 1 1 0 0 0 0 16 0 1982.8026 A0A087WVZ6;A6H8Y8;A0A087WV57;Q2HXV5;Q5JV90;Q5TH12;H7C4X9;A0A087WYS3;Q9ULU4 A0A087WVZ6 112 127 ZMYND8;DKFZp564P1772 Protein kinase C-binding protein 1 no no 2 0.0055703 51.286 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9146 422;1317 9357 24260 38020 38020 1 LTSIIFAEDITTGQVLR SQKAVVQARLTQPARLTSIIFAEDITTGQV SIIFAEDITTGQVLRCDAIVDLIHDIQIVS R L T L R C 1 1 0 1 0 1 1 1 0 3 2 0 0 1 0 1 3 0 0 1 0 0 17 0 1876.0306 Q8TEM1 Q8TEM1 92 108 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.015199 41.242 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1921200 0 1921200 1921200 0 1921200 0 0 0 9147 1937 9358 24261 38021 38021 1 LTSLDIPATYLTGDK VISPLRSLIVDQVQKLTSLDIPATYLTGDK LTSLDIPATYLTGDKTDSEATNIYLQLSKK K L T D K T 1 0 0 2 0 0 0 1 0 1 3 1 0 0 1 1 3 0 1 0 0 0 15 0 1606.8454 B2RAN0;P54132;H0YNU5;B7ZKN7;B7Z2X2 B2RAN0 727 741 BLM Bloom syndrome protein yes no 2 2.4507E-05 87.001 1 1 0.99946 0.89154 22.961 2 Median 0.7528 0.75793 NaN 1 0 Median 1.327 1.0487 NaN 1 0 Median 20055000 10605000 9450100 16120000 8854500 7265200 3935800 1750800 2184900 9148 873 9359 24262;24263 38022;38023;38024 38022 3 LTSLNVK NIYNACCTLRIDFSKLTSLNVKYNNDKSRD TLRIDFSKLTSLNVKYNNDKSRDYTRPDLP K L T V K Y 0 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 7 0 773.4647 A6NLN1;A0A0U1RRM4;P26599;K7EK45;A0A087WU68;Q59H49;A0A024R163;O95758 A6NLN1 230 236 PTBP1;ROD1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 no no 2 0.03096 67.903 1 1.8274 1.9066 NaN 1 Median 1.8274 1.9066 NaN 1 0 Median NaN NaN NaN 0 0 Median 34158000 12872000 21285000 34158000 12872000 21285000 0 0 0 9149 592;71 9360 24264 38025;38026 38025 2 LTSLVPFVDAFQLER LQQVSQIYQSIEFSRLTSLVPFVDAFQLER LTSLVPFVDAFQLERAIVDAARHCDLQVRI R L T E R A 1 1 0 1 0 1 1 0 0 0 3 0 0 2 1 1 1 0 0 2 0 0 15 0 1733.9352 Q05BS0;Q6P1R0;Q3B770;Q7Z5T5;Q24JU4;J9R021;Q14152 Q05BS0 455 469 EIF3A;eIF3a Eukaryotic translation initiation factor 3 subunit A yes no 2 1.0381E-06 93.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6170100 0 6170100 6170100 0 6170100 0 0 0 9150 1340 9361 24265 38027 38027 1 LTSSSIDPGLSIK DEEDFLNSTKAKLLKLTSSSIDPGLSIKQL LKLTSSSIDPGLSIKQLGGLYINFNADKLQ K L T I K Q 0 0 0 1 0 0 0 1 0 2 2 1 0 0 1 4 1 0 0 0 0 0 13 0 1316.7187 Q5QJE6 Q5QJE6 559 571 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 1.158E-08 113.47 2 2 1.2829 1.2573 8.0487 4 Median 1.0084 1.1587 8.8578 2 0 Median 1.5575 1.2899 0.93595 2 0 Median 497370000 247260000 250110000 416680000 213530000 203150000 80686000 33733000 46953000 9151 1813 9362 24266;24267;24268;24269 38028;38029;38030;38031;38032;38033;38034 38029 7 LTSSTSNSSLTADVNSGFAK PSYMAMTTAAKRKRKLTSSTSNSSLTADVN SNSSLTADVNSGFAKRVRQDNSSEKHLQEN K L T A K R 2 0 2 1 0 0 0 1 0 0 2 1 0 1 0 6 3 0 0 1 0 0 20 0 1985.9542 B2R6H3;Q8NI77 B2R6H3 833 852 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 5.4979E-12 92.939 3 0.74207 0.73059 NaN 1 Median 0.74207 0.73059 NaN 1 0 Median NaN NaN NaN 0 0 Median 14094000 10151000 3943400 14094000 10151000 3943400 0 0 0 9152 842 9363 24270;24271;24272 38035;38036;38037;38038 38037 4 LTSVTLEMESK LRKQYLSENEQWQQKLTSVTLEMESKLAAE WQQKLTSVTLEMESKLAAEKKQTEQLSLEL K L T S K L 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 2 2 0 0 1 0 0 11 0 1236.6272 P49454 P49454 1709 1719 CENPF Centromere protein F yes yes 2 0.013319 46.406 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6331300 0 6331300 6331300 0 6331300 0 0 0 9153 1581 9364 24273 38039 38039 1363 1 LTTASQTNIK EQKKRKLLPDTILEKLTTASQTNIKKSPGK TILEKLTTASQTNIKKSPGKVKEVNLQKKN K L T I K K 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 3 0 0 0 0 0 10 0 1075.5873 A0A024QZW2;Q9UMY1;H7C2B1 A0A024QZW2 122 131 NOL7 Nucleolar protein 7 yes no 2 0.0091454 55.112 1 0.93354 0.9435 NaN 1 Median 0.93354 0.9435 NaN 1 0 Median NaN NaN NaN 0 0 Median 8625000 4446000 4179000 8625000 4446000 4179000 0 0 0 9154 30 9365 24274 38040 38040 1 LTTDFNVIVEALSK WVPLEIMIKFNRLNRLTTDFNVIVEALSKS RLTTDFNVIVEALSKSKAELMEISEDKTKI R L T S K S 1 0 1 1 0 0 1 0 0 1 2 1 0 1 0 1 2 0 0 2 0 0 14 0 1548.8399 B5BUB5;P05455;E9PGX9;E7ERC4;E9PFL9 B5BUB5 61 74 SSB Lupus La protein yes no 2 1.7255E-57 196.38 2 1.4159 1.486 7.9474 2 Median 1.4159 1.486 7.9474 2 0 Median NaN NaN NaN 0 0 Median 73726000 35162000 38564000 73726000 35162000 38564000 0 0 0 9155 1077 9366 24275;24276 38041;38042;38043;38044;38045 38042 5 LTTDPDLILEVLR FIPIWTVANMEEIKKLTTDPDLILEVLRSS KKLTTDPDLILEVLRSSPMVQVDEKGEKVR K L T L R S 0 1 0 2 0 0 1 0 0 1 4 0 0 0 1 0 2 0 0 1 0 0 13 0 1496.845 Q71RC2;Q8TBL5;A0A087WTL9;Q6P4E2;Q96J85;F8W1I4;F8VY40 Q71RC2 166 178 LARP4 La-related protein 4 yes no 2 0.022372 46.706 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4584400 0 4584400 4584400 0 4584400 0 0 0 9156 1868 9367 24277 38046 38046 1 LTTEATQTPVSNK KTITGNSAAVITPFKLTTEATQTPVSNKKP FKLTTEATQTPVSNKKPVFDLKASLSRPLN K L T N K K 1 0 1 0 0 1 1 0 0 0 1 1 0 0 1 1 4 0 0 1 0 0 13 0 1388.7147 Q9BXS6;A8K4B4 Q9BXS6 342 354 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 8.9593E-136 252.14 3 2 0.5628 0.44637 6.7196 3 Median 0.42564 0.43147 NaN 1 0 Median 0.58014 0.46823 6.7616 2 0 Median 57078000 31957000 25121000 37399000 19161000 18237000 19679000 12795000 6883500 9157 2014 9368 24278;24279;24280;24281;24282 38047;38048;38049;38050;38051;38052;38053;38054 38050 8 LTTLELLEVR KSAATWDERFSALERLTTLELLEVRRQQEE SALERLTTLELLEVRRQQEEEERKRRPPSP R L T V R R 0 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 2 0 0 1 0 0 10 0 1185.6969 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;B4DIF8 D6W5C0 1993 2002 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 2.7898E-09 126.07 2 1.6009 1.6214 7.0046 2 Median 1.6009 1.6214 7.0046 2 0 Median NaN NaN NaN 0 0 Median 52971000 21573000 31398000 52971000 21573000 31398000 0 0 0 9158 415 9369 24283;24284 38055;38056 38056 2 LTTLPSDFCGLTHLVK AALPKATILDLSCNKLTTLPSDFCGLTHLV TTLPSDFCGLTHLVKLDLSKNKLQQLPADF K L T V K L 0 0 0 1 1 0 0 1 1 0 4 1 0 1 1 1 3 0 0 1 0 0 16 0 1800.9444 Q96AG4 Q96AG4 51 66 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 3 0.020671 14.88 1 0.72715 0.60691 NaN 1 Median NaN NaN NaN 0 0 Median 0.72715 0.60691 NaN 1 0 Median 49146000 28271000 20875000 0 0 0 49146000 28271000 20875000 9159 1958 9370 24285 38057 38057 1 LTTPPVNTR MAIKSRVVLPYLVPKLTTPPVNTRVLAFLS PYLVPKLTTPPVNTRVLAFLSSVAGDALTR K L T T R V 0 1 1 0 0 0 0 0 0 0 1 0 0 0 2 0 3 0 0 1 0 0 9 0 997.55564 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2084 2092 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0018198 80.438 1 1.7331 1.7596 NaN 1 Median 1.7331 1.7596 NaN 1 0 Median NaN NaN NaN 0 0 Median 27830000 9856700 17973000 27830000 9856700 17973000 0 0 0 9160 1205 9371 24286 38058;38059 38058 2 LTTPTYGDLNHLVS IDNEALYDICFRTLKLTTPTYGDLNHLVS_ KLTTPTYGDLNHLVS_______________ K L T V S - 0 0 1 1 0 0 0 1 1 0 3 0 0 0 1 1 3 0 1 1 0 0 14 0 1529.7726 M0R042;M0QYM7 M0R042 131 144 TUBB4A yes no 2 0.01278 49.3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9161 1353 9372 24287 38060 38060 1 LTTPTYGDLNHLVSATMSGVTTCLR IDNEALYDICFRTLKLTTPTYGDLNHLVSA HLVSATMSGVTTCLRFPGQLNADLRKLAVN K L T L R F 1 1 1 1 1 0 0 2 1 0 4 0 1 0 1 2 6 0 1 2 0 0 25 0 2707.3309 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;P68371;Q8IWP6;M0R2D3;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2;A5D907;A5D906;A1L195;A1L196;P04350;B4DE77 Q5JP53 199 223 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB4A;TUBB2A;TUBB2B;DKFZp566F223 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 3 1.8882E-21 108.64 6 2 1.624 1.7572 64.591 8 Median 2.2915 2.6233 46.49 6 0 Median 0.85169 0.7269 49.838 2 0 Median 728720000 242530000 486180000 652880000 203260000 449610000 75840000 39269000 36571000 9162 1452;1660;1723;1441 9373;9374 24288;24289;24290;24291;24292;24293;24294;24295 38061;38062;38063;38064;38065;38066;38067;38068;38069;38070;38071;38072;38073;38074;38075 38075 1143 15 LTTTGQVTSPVK KAAGTPKKKAVVQAKLTTTGQVTSPVKGAS QAKLTTTGQVTSPVKGASFVTSTNPRKFSG K L T V K G 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 1 4 0 0 2 0 0 12 0 1230.682 P49916;K7ERZ5;K7ENR9;Q96DF0 P49916 202 213 LIG3 DNA ligase 3 yes no 2 0.0008083 65.5 1 0.72748 0.72026 NaN 1 Median 0.72748 0.72026 NaN 1 0 Median NaN NaN NaN 0 0 Median 9461900 5680400 3781500 9461900 5680400 3781500 0 0 0 9163 1589 9375 24296 38076 38076 1 LTVADALEPVQFEDGQK LSKVSILESLDKWERLTVADALEPVQFEDG VADALEPVQFEDGQKIVVQGEPGDEFFIIL R L T Q K I 2 0 0 2 0 2 2 1 0 0 2 1 0 1 1 0 1 0 0 2 0 0 17 0 1858.9313 K7EM13;Q68DQ4;B2R5T5;P10644;K7EPB2 K7EM13 69 85 PRKAR1A;DKFZp779L0468 cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 2 3.8042E-07 96.64 1 1.8817 1.8825 NaN 1 Median 1.8817 1.8825 NaN 1 0 Median NaN NaN NaN 0 0 Median 14017000 4882100 9134600 14017000 4882100 9134600 0 0 0 9164 835 9376 24297 38077;38078 38078 2 LTVADIR LLPENTFIVGYARSRLTVADIRKQSEPFFK IVGYARSRLTVADIRKQSEPFFKATPEEKL R L T I R K 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 7 0 786.45995 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;Q0PHS1;E7EUI8;B4DYA7;E9PD92;E7EM57;I3V9R4;Q0PHS3;Q0PHS2 Q2VF42 35 41 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.037624 60.76 2 1.3284 1.3726 NaN 1 Median 1.3284 1.3726 NaN 1 0 Median NaN NaN NaN 0 0 Median 37862000 24893000 12969000 37862000 24893000 12969000 0 0 0 9165 775 9377 24298;24299 38079;38080 38079 2 LTVAENEAETK KSCQFVAVRRDTGEKLTVAENEAETKLQAI TGEKLTVAENEAETKLQAILEDIQVTLFTR K L T T K L 2 0 1 0 0 0 3 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1203.5983 P07814;B4DP50 P07814 1390 1400 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 1.13E-13 150.08 2 2 1.7936 1.7171 67.377 4 Median 2.787 3.0669 6.9786 2 0 Median 1.1951 0.95893 7.3326 2 0 Median 126730000 37425000 89306000 115420000 32055000 83361000 11315000 5370800 5944700 9166 1454 9378 24300;24301;24302;24303 38081;38082;38083;38084;38085;38086 38082 6 LTVDEAVR QAGTGHIIDPATSARLTVDEAVRAGLVGPE DPATSARLTVDEAVRAGLVGPEFHEKLLSA R L T V R A 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 901.4869 Q15149;D3DWL0;Q96IE3 Q15149 3213 3220 PLEC;PLEC1 Plectin yes no 2 0.0062953 87.754 2 1 1.7315 2.0123 3.6448 2 Median 1.7315 2.0123 3.6448 2 0 Median NaN NaN NaN 0 0 Median 410660000 136380000 274280000 407940000 136380000 271560000 2715800 0 2715800 9167 1754 9379 24304;24305;24306 38087;38088;38089;38090;38091 38090 5 LTVDSAIAR QAATGGIIDPHRNEKLTVDSAIARDLIDFD PHRNEKLTVDSAIARDLIDFDDRQQIYAAE K L T A R D 2 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 944.5291 P15924;Q4LE79 P15924 2067 2075 DSP;DSP variant protein Desmoplakin yes no 2 0.047388 47.869 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14043000 14043000 0 14043000 14043000 0 0 0 0 9168 1486 9380 24307 38092 38092 1 LTVEDLEK DDEAAELMQQVNVLKLTVEDLEKERDFYFG QQVNVLKLTVEDLEKERDFYFGKLRNIELI K L T E K E 0 0 0 1 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 945.50188 B4DM33;Q15691 B4DM33 175 182 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes no 2 0.018303 66.429 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7305700 0 7305700 7305700 0 7305700 0 0 0 9169 1001 9381 24308 38093 38093 1 LTVEDPVTVEYITR RIVINRARVECQSHRLTVEDPVTVEYITRY RLTVEDPVTVEYITRYIASLKQRYTQSNGR R L T T R Y 0 1 0 1 0 0 2 0 0 1 1 0 0 0 1 0 3 0 1 3 0 0 14 0 1633.8563 Q05DH1;A0A0K0K1K4;O14818;H0Y586;B0YJ74;A0A087WYS6;Q8TAA3;H0UI83;Q4G1B8 Q05DH1 96 109 PSMA7;PSMA8;hCG_41772 Proteasome subunit alpha type;Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 2 0.0015088 70.488 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21897000 0 21897000 21897000 0 21897000 0 0 0 9170 539 9382 24309;24310 38094;38095 38095 2 LTVEEAVR QAATGYVIDPIKGLKLTVEEAVRMGIVGPE DPIKGLKLTVEEAVRMGIVGPEFKDKLLSA K L T V R M 1 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 915.50255 Q15149;D3DWL0;Q96IE3 Q15149 4122 4129 PLEC;PLEC1 Plectin no no 2 0.013109 66.073 2 2 2.0885 2.017 7.249 4 Median 1.7799 2.0004 11.483 2 0 Median 2.3263 2.017 5.0093 2 0 Median 180670000 65319000 115350000 171320000 62629000 108690000 9355500 2689300 6666200 9171 1754 9383 24311;24312;24313;24314 38096;38097;38098;38099;38100;38101 38100 6 LTVEFMHYIIAAR RTGKCHVQTIQLCRRLTVEFMHYIIAARAL RRLTVEFMHYIIAARALRKVFLSIKGIYYQ R L T A R A 2 1 0 0 0 0 1 0 1 2 1 0 1 1 0 0 1 0 1 1 0 0 13 0 1562.8279 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7BYY8 B5MCF9 164 176 PES1 Pescadillo homolog yes no 3 0.025285 23.711 1 1.1269 0.94181 NaN 1 Median NaN NaN NaN 0 0 Median 1.1269 0.94181 NaN 1 0 Median 3449900 1642000 1807900 0 0 0 3449900 1642000 1807900 9172 886 9384 24315 38102 38102 1 LTVNEAVK QAASGFLLDPVRNRRLTVNEAVKEGVVGPE DPVRNRRLTVNEAVKEGVVGPELHHKLLSA R L T V K E 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 872.49673 Q15149;D3DWL0 Q15149 2885 2892 PLEC;PLEC1 Plectin yes no 2 0.0087497 77.282 1 1.9833 2.2024 NaN 1 Median 1.9833 2.2024 NaN 1 0 Median NaN NaN NaN 0 0 Median 49479000 17034000 32446000 49479000 17034000 32446000 0 0 0 9173 1754 9385 24316 38103;38104 38104 2 LTVQEEQIVELIEK GVYISEENFRVMSGKLTVQEEQIVELIEKI KLTVQEEQIVELIEKIGAVEEELNRVTELF K L T E K I 0 0 0 0 0 2 4 0 0 2 2 1 0 0 0 0 1 0 0 2 0 0 14 0 1669.9138 P52732 P52732 412 425 KIF11 Kinesin-like protein KIF11 yes yes 2 5.4586E-15 122.7 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31698000 0 31698000 31698000 0 31698000 0 0 0 9174 1602 9386 24317;24318 38105;38106 38105 2 LTVSSLQESGLK PFVVPVASPSGDARRLTVSSLQESGLKVNQ ARRLTVSSLQESGLKVNQPASFAVSLNGAK R L T L K V 0 0 0 0 0 1 1 1 0 0 3 1 0 0 0 3 1 0 0 1 0 0 12 0 1260.6925 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4DTD5 P21333 2335 2346 FLNA;FLJ00119 Filamin-A yes no 2 0.0068733 59.542 1 1 1.1894 1.2356 NaN 1 Median 1.1894 1.2356 NaN 1 0 Median NaN NaN NaN 0 0 Median 16060000 6012700 10047000 14849000 6012700 8836000 1211400 0 1211400 9175 1504 9387 24319;24320 38107;38108 38108 2 LTWHAYPEDAENK NVKCPQIVIAFYEERLTWHAYPEDAENKEK ERLTWHAYPEDAENKEKETAKS________ R L T N K E 2 0 1 1 0 0 2 0 1 0 1 1 0 0 1 0 1 1 1 0 0 0 13 0 1572.7209 V9HWG0;P45973;Q6I9T7 V9HWG0 172 184 HEL25;CBX5 Chromobox protein homolog 5 yes no 2;3 2.3365E-59 189.57 5 4 0.93207 0.7605 9.2778 7 Median 0.61778 0.67751 6.2309 3 0 Median 0.9753 0.78632 2.8567 4 0 Median 419490000 258120000 161370000 361430000 228170000 133260000 58059000 29950000 28109000 9176 1568 9388 24321;24322;24323;24324;24325;24326;24327;24328;24329 38109;38110;38111;38112;38113;38114;38115;38116;38117;38118;38119;38120;38121;38122;38123;38124 38113 16 LTWHSCPEDEAQ NMKCPQIVIAFYEERLTWHSCPEDEAQ___ EERLTWHSCPEDEAQ_______________ R L T A Q - 1 0 0 1 1 1 2 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 12 0 1471.6038 A4D177;Q13185 A4D177 172 183 CBX3 Chromobox protein homolog 3 yes no 2 4.0838E-08 106.6 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 390010000 0 0 284820000 0 0 105190000 0 0 9177 662 9389 24330;24331;24332;24333;24334 38125;38126;38127;38128;38129;38130;38131 38125 7 LTYEIEDEK KCYGQIKELNEKITRLTYEIEDEKRRRKSV NEKITRLTYEIEDEKRRRKSVEDRFDQQKN R L T E K R 0 0 0 1 0 0 3 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 9 0 1138.5394 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 1114 1122 DSP;DSP variant protein Desmoplakin yes no 2 0.0010366 96.948 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9178 1486 9390 24335 38132 38132 1 LTYLLQNSLGGSAK ALSNKESHVPYRNSKLTYLLQNSLGGSAKM KLTYLLQNSLGGSAKMLMFVNISPLEENVS K L T A K M 1 0 1 0 0 1 0 2 0 0 4 1 0 0 0 2 1 0 1 0 0 0 14 0 1463.7984 A0A024RCS7;Q9BW19;B4DMA8;B4E063;A0A087X1W5 A0A024RCS7 620 633 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.043177 39.702 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 956500 0 956500 0 0 0 956500 0 956500 9179 371 9391 24336 38133 38133 1 LTYTMILNLLR RMMMGKPSQLQSQFRLTYTMILNLLRVDAL SQFRLTYTMILNLLRVDALRVEDMMKRSFS R L T L R V 0 1 1 0 0 0 0 0 0 1 4 0 1 0 0 0 2 0 1 0 0 0 11 0 1349.7741 B4DSY1;Q9NPK3;Q96BC0;O76046;Q15477;A0A024RCU1;B4E0N1;B4DM01;Q59F56 B4DSY1 380 390 SKIV2L;SKI2W Helicase SKI2W yes no 2 0.0051809 57.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9180 1031 9392 24337 38134 38134 812 1 LVAAGSYQR RVKLLDTMVDTFLQKLVAAGSYQRFTDCYK DTFLQKLVAAGSYQRFTDCYKCFYQLQPAM K L V Q R F 2 1 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 9 0 963.51378 U3KQ54;Q6P1K2 U3KQ54 49 57 PMF1-BGLAP;PMF1 Polyamine-modulated factor 1 yes no 2 0.021548 49.418 2 0.92527 0.94082 6.4326 2 Median 0.92527 0.94082 6.4326 2 0 Median NaN NaN NaN 0 0 Median 27895000 14070000 13825000 27895000 14070000 13825000 0 0 0 9181 1852 9393 24338;24339 38135;38136 38136 2 LVAFCPFASSQVALENANAVSEGVVHEDLR EESVLNLGKFHSIVRLVAFCPFASSQVALE NANAVSEGVVHEDLRLLLETHLPSKKKKVL R L V L R L 5 1 2 1 1 1 3 1 1 0 3 0 0 2 1 3 0 0 0 5 0 0 30 0 3228.5874 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 48 77 NOP56 Nucleolar protein 56 yes no 3 8.9071E-56 149.07 2 2 0.7947 0.79149 2.2181 4 Median 0.7021 0.79149 1.5609 2 0 Median 0.91436 0.7962 3.46 2 0 Median 564320000 295180000 269150000 151670000 87059000 64615000 412650000 208120000 204530000 9182 785 9394 24340;24341;24342;24343 38137;38138;38139;38140;38141;38142;38143;38144 38141 8 LVAGEMGQNEPDQGGQR RVLDVNLMGTFNVIRLVAGEMGQNEPDQGG AGEMGQNEPDQGGQRGVIINTASVAAFEGQ R L V Q R G 1 1 1 1 0 3 2 4 0 0 1 0 1 0 1 0 0 0 0 1 0 0 17 0 1784.8112 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 131 147 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 6.6059E-82 206.69 2 2.5676 2.767 9.8471 2 Median 2.5676 2.767 9.8471 2 0 Median NaN NaN NaN 0 0 Median 84304000 23488000 60816000 84304000 23488000 60816000 0 0 0 9183 555 9395 24344;24345 38145;38146;38147;38148 38148 410 4 LVAIVDVIDQNR VGRVAYVSFGPHAGKLVAIVDVIDQNRALV AGKLVAIVDVIDQNRALVDGPCTQVRRQAM K L V N R A 1 1 1 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 3 0 0 12 0 1353.7616 E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914;A8K3Q9 A8K3Q9 24 35 RPL14 60S ribosomal protein L14 no no 2 9.786E-18 140.16 3 2 0.93497 0.94708 21.015 4 Median 0.95989 1.1329 0.68252 2 0 Median 0.90636 0.78753 1.4357 2 0 Median 1657100000 827860000 829230000 1431700000 709420000 722290000 225380000 118440000 106940000 9184 645;725 9396 24346;24347;24348;24349;24350 38149;38150;38151;38152;38153;38154;38155;38156;38157;38158;38159;38160;38161;38162;38163;38164;38165;38166;38167 38152 19 LVARPEPATGYTLEFR SVQTADHRFLRHDGRLVARPEPATGYTLEF VARPEPATGYTLEFRSGKVAFRDCEGRYLA R L V F R S 2 2 0 0 0 0 2 1 0 0 2 0 0 1 2 0 2 0 1 1 0 0 16 1 1818.9628 B3KTA3;Q16658 B3KTA3 181 196 FSCN1 Fascin yes no 3 1.0332E-06 85.619 2 2 2.907 3.2993 50.05 3 Plateau 2.907 3.2993 NaN 1 0 Median 1.5613 1.4049 12.263 2 0 Median 57180000 10992000 46188000 51787000 9116800 42670000 5393000 1875100 3518000 9185 942 9397 24351;24352;24353;24354 38168;38169;38170;38171;38172 38169 5 LVAWDPACLPLPPPPPAFK ______________________________ DPACLPLPPPPPAFKSMEVANFYYEADCLA R L V F K S 3 0 0 1 1 0 0 0 0 0 3 1 0 1 7 0 0 1 0 1 0 0 19 0 2085.1121 P17676 P17676 4 22 CEBPB CCAAT/enhancer-binding protein beta yes yes 2 0.044482 29.544 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1806000 0 1806000 1806000 0 1806000 0 0 0 9186 1493 9398 24355 38173 38173 1 LVCSGENDNHGQIANLPSAVTSDQK SDVLPKAANTATEEKLVCSGENDNHGQIAN GQIANLPSAVTSDQKSQKVDTLPYVPEPIK K L V Q K S 2 0 3 2 1 2 1 2 1 1 2 1 0 0 1 3 1 0 0 2 0 0 25 0 2653.2402 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1626 1650 AHCTF1 Protein ELYS yes no 3 3.237E-14 86.211 2 2 1.7196 1.5418 25.632 4 Median 1.2053 1.2075 8.7548 2 0 Median 2.3452 1.8657 1.1541 2 0 Median 86914000 34541000 52373000 50546000 23792000 26754000 36369000 10749000 25619000 9187 1945 9399 24356;24357;24358;24359 38174;38175;38176;38177;38178;38179;38180;38181;38182;38183 38179 10 LVDEDFPEDSSSQK YTQAILDMTYFEENKLVDEDFPEDSSSQKV KLVDEDFPEDSSSQKVKELISFLSEPEILV K L V Q K V 0 0 0 3 0 1 2 0 0 0 1 1 0 1 1 3 0 0 0 1 0 0 14 0 1594.6999 A0A0C4DGW6;A6NDU8 A0A0C4DGW6 82 95 C5orf51 UPF0600 protein C5orf51 yes no 2 0.0073196 53.08 3 1.8582 1.9396 NaN 1 Median 1.8582 1.9396 NaN 1 0 Median NaN NaN NaN 0 0 Median 11801000 3346400 8454300 11801000 3346400 8454300 0 0 0 9188 519 9400 24360;24361;24362 38184;38185;38186 38184 3 LVDEEPQLTK WPGDILAYKEHLKSKLVDEEPQLTKRTHNV HLKSKLVDEEPQLTKRTHNV__________ K L V T K R 0 0 0 1 0 1 2 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 10 0 1170.6132 A0A090N7X1;A0A090N7Y2;Q9UG63 A0A090N7X1 609 618 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.00097153 80.455 2 1 0.83037 0.75559 12.823 2 Median 0.65127 0.69009 NaN 1 0 Median 1.0587 0.8273 NaN 1 0 Median 47944000 36279000 11665000 44529000 34942000 9586400 3415000 1336900 2078100 9189 455 9401 24363;24364;24365 38187;38188;38189 38188 3 LVDHIDQTPGFSLQQLR GYRCLADIVVATPGRLVDHIDQTPGFSLQQ DHIDQTPGFSLQQLRFLIIDEADRMIDSMH R L V L R F 0 1 0 2 0 3 0 1 1 1 3 0 0 1 1 1 1 0 0 1 0 0 17 0 1966.0272 F1T0L5;Q8N8A6 F1T0L5 350 366 DDX51 ATP-dependent RNA helicase DDX51 yes no 3 0.0043739 41.422 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8807600 0 8807600 8807600 0 8807600 0 0 0 9190 1251 9402 24366 38190 38190 1 LVDIIAAVPPQYR KTKTAAKYGLSAQPRLVDIIAAVPPQYRKV PRLVDIIAAVPPQYRKVLMPKLKAKPIRTA R L V Y R K 2 1 0 1 0 1 0 0 0 2 1 0 0 0 2 0 0 0 1 2 0 0 13 0 1453.8293 Q9H9T3;E5RHY2;E5RIC0;E5RIZ7;E5RHR2 Q9H9T3 57 69 ELP3 Elongator complex protein 3 yes no 2 0.0010334 78.098 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5949500 0 5949500 5949500 0 5949500 0 0 0 9191 2047 9403 24367;24368 38191;38192 38191 2 LVDLPLGLPFYK RFLGKLMAKAIMDFRLVDLPLGLPFYKWML DFRLVDLPLGLPFYKWMLRQETSLTSHDLF R L V Y K W 0 0 0 1 0 0 0 1 0 0 4 1 0 1 2 0 0 0 1 1 0 0 12 0 1373.7959 Q14669;H7C2Y1 Q14669 1713 1724 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 2 1.8062E-10 108.67 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9192 1736 9404 24369;24370;24371 38193;38194;38195 38194 3 LVDNFQHEENLLQQVASK QDKKSVESTCLCFARLVDNFQHEENLLQQV NFQHEENLLQQVASKDLLTNVQQLLVVTPP R L V S K D 1 0 2 1 0 3 2 0 1 0 3 1 0 1 0 1 0 0 0 2 0 0 18 0 2111.0647 Q14669;Q57Z94 Q14669 629 646 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 3 1.6636E-05 56.817 1 1.5911 1.252 NaN 1 Median NaN NaN NaN 0 0 Median 1.5911 1.252 NaN 1 0 Median 4004500 1369400 2635100 0 0 0 4004500 1369400 2635100 9193 1736 9405 24372 38196 38196 1 LVDPVAGSGGPGSR GDEEDEDEIIVPKKKLVDPVAGSGGPGSRF KLVDPVAGSGGPGSRFKGKHSLDSDEEEDD K L V S R F 1 1 0 1 0 0 0 4 0 0 1 0 0 0 2 2 0 0 0 2 0 0 14 0 1267.6521 A0A0S2Z5J7;A0A024QZC1;O95400 A0A0S2Z5J7 27 40 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes no 2 7.4827E-05 89.301 2 1 0.68645 0.66457 27.038 2 Median 0.74093 0.80458 NaN 1 0 Median 0.63599 0.54892 NaN 1 0 Median 43400000 31131000 12269000 42378000 30555000 11823000 1022000 576240 445710 9194 15 9406 24373;24374;24375 38197;38198;38199;38200 38199 4 LVDQNLNK EMKLRLDSIVIQQGRLVDQNLNKIGKDEML IVIQQGRLVDQNLNKIGKDEMLQMIRHGAT R L V N K I 0 0 2 1 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 942.51345 O60264;B7ZAX9;B4DZC0 O60264 637 644 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.011764 73.324 2 2.4797 2.4672 NaN 1 Median 2.4797 2.4672 NaN 1 0 Median NaN NaN NaN 0 0 Median 39059000 8412000 30647000 39059000 8412000 30647000 0 0 0 9195 1391 9407 24376;24377 38201;38202;38203 38202 3 LVDQSGPPHEPK LLEYARSHGFAAEFKLVDQSGPPHEPKFVY EFKLVDQSGPPHEPKFVYQAKVGGRWFPAV K L V P K F 0 0 0 1 0 1 1 1 1 0 1 1 0 0 3 1 0 0 0 1 0 0 12 0 1302.6568 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 746 757 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 1.7783E-12 126.19 1 2.1243 2.1621 NaN 1 Median 2.1243 2.1621 NaN 1 0 Median NaN NaN NaN 0 0 Median 12429000 4278200 8150300 12429000 4278200 8150300 0 0 0 9196 5 9408 24378 38204 38204 1 LVDSPDIQPVGTCEK RLRLDGSDNRNDFWRLVDSPDIQPVGTCEK LVDSPDIQPVGTCEKEGDLLQPPLGYQMNT R L V E K E 0 0 0 2 1 1 1 1 0 1 1 1 0 0 2 1 1 0 0 2 0 0 15 0 1656.8029 Q9UQR0;B4DZR9 Q9UQR0 109 123 SCML2 Sex comb on midleg-like protein 2 yes no 2 1.7366E-06 99.215 2 2 0.87203 0.71941 34.189 4 Median 0.67806 0.69392 58.418 2 0 Median 0.87203 0.71941 8.9967 2 0 Median 25915000 15052000 10863000 20813000 12367000 8446000 5101600 2685000 2416600 9197 2118 9409 24379;24380;24381;24382 38205;38206;38207;38208;38209;38210;38211 38207 7 LVDTAWLEIMTK LVLEMVHHNTASLEKLVDTAWLEIMTKYAV LEKLVDTAWLEIMTKYAVGEECDFEVGKEK K L V T K Y 1 0 0 1 0 0 1 0 0 1 2 1 1 0 0 0 2 1 0 1 0 0 12 0 1418.7479 Q9UIG0 Q9UIG0 102 113 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.00083731 84.658 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13288000 0 13288000 0 0 0 13288000 0 13288000 9198 2103 9410;9411 24383;24384;24385 38212;38213;38214 38212 1929 3 LVDTFLEDVK QLTTGNGLFINESAKLVDTFLEDVKNLYHS NESAKLVDTFLEDVKNLYHSEAFSINFRDA K L V V K N 0 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 2 0 0 10 0 1177.6231 CON__P34955 CON__P34955 148 157 yes yes 2 0.048422 47.187 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1971700 1971700 0 0 0 0 1971700 1971700 0 + 9199 1164 9412 24386 38215 38215 1 LVEALCAEHQINLIK LCVLASNCDEPMYVKLVEALCAEHQINLIK LVEALCAEHQINLIKVDDNKKLGEWVGLCK K L V I K V 2 0 1 0 1 1 2 0 1 2 3 1 0 0 0 0 0 0 0 1 0 0 15 0 1749.9447 P25398 P25398 64 78 RPS12 40S ribosomal protein S12 yes yes 2;3 7.0616E-23 134.56 5 2 1.2362 1.3873 22.174 5 Median 1.2566 1.4304 2.3112 3 0 Median 1.1963 0.95559 7.3921 2 0 Median 346900000 145180000 201720000 326390000 137270000 189130000 20504000 7911800 12592000 9200 1515 9413 24387;24388;24389;24390;24391;24392;24393 38216;38217;38218;38219;38220;38221;38222;38223;38224;38225;38226 38221 10 LVEFSAFLEQQR VPAWQGRSIGTTKLRLVEFSAFLEQQRDPD KLRLVEFSAFLEQQRDPDSYNKHLFVHIGH R L V Q R D 1 1 0 0 0 2 2 0 0 0 2 0 0 2 0 1 0 0 0 1 0 0 12 0 1465.7565 H0YE88;P28347;E9PKB7;H0YEJ9;Q59EF3 H0YE88 218 229 TEAD1 Transcriptional enhancer factor TEF-1 yes no 2 3.5535E-06 111.06 2 1 0.80183 0.8174 24.206 2 Median 0.80183 0.8174 24.206 2 0 Median NaN NaN NaN 0 0 Median 44433000 22899000 21534000 44433000 22899000 21534000 0 0 0 9201 1291 9414 24394;24395;24396 38227;38228;38229;38230;38231 38230 5 LVEFSAFLEQQRDPDSYNK VPAWQGRSIGTTKLRLVEFSAFLEQQRDPD SAFLEQQRDPDSYNKHLFVHIGHANHSYSD R L V N K H 1 1 1 2 0 2 2 0 0 0 2 1 0 2 1 2 0 0 1 1 0 0 19 1 2285.0964 H0YE88;P28347;E9PKB7;Q59EF3 H0YE88 218 236 TEAD1 Transcriptional enhancer factor TEF-1 yes no 3 1.44E-05 55.589 2 0.89461 0.75208 15.971 2 Median NaN NaN NaN 0 0 Median 0.89461 0.75208 15.971 2 0 Median 13163000 6743000 6420100 0 0 0 13163000 6743000 6420100 9202 1291 9415 24397;24398 38232;38233;38234 38233 3 LVEGPPPPPEPPK RFGIMEKVYCHYFVKLVEGPPPPPEPPKTA VKLVEGPPPPPEPPKTAVAHAKEYIQQLRS K L V P K T 0 0 0 0 0 0 2 1 0 0 1 1 0 0 7 0 0 0 0 1 0 0 13 0 1352.734 E7ESL0;J3KQY1;Q9NWU5 E7ESL0 178 190 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 0.00012952 84.17 2 1.0878 1.1214 0.91379 2 Median 1.0878 1.1214 0.91379 2 0 Median NaN NaN NaN 0 0 Median 31189000 16093000 15096000 31189000 16093000 15096000 0 0 0 9203 1222 9416 24399;24400 38235;38236;38237;38238;38239 38239 5 LVEIDNGK YSEELRETKRRHETRLVEIDNGKQREFESR KRRHETRLVEIDNGKQREFESRLADALQEL R L V G K Q 0 0 1 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 886.476 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 226 233 LMNA Prelamin-A/C;Lamin-A/C yes no 2 6.7995E-05 119.56 2 1.186 1.3405 NaN 1 Median 1.186 1.3405 NaN 1 0 Median NaN NaN NaN 0 0 Median 125760000 35869000 89896000 125760000 35869000 89896000 0 0 0 9204 1440 9417 24401;24402 38240;38241 38241 2 LVELSAENEK SRDKAKRRNQEMQQKLVELSAENEKLHQRV EMQQKLVELSAENEKLHQRVEQLTRDLAGL K L V E K L 1 0 1 0 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1130.5819 P49716 P49716 223 232 CEBPD CCAAT/enhancer-binding protein delta yes yes 2 0.00044847 72.928 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 923780 0 923780 0 0 0 923780 0 923780 9205 1586 9418 24403;24404 38242;38243 38242 2 LVEQLDIEETEQSK EEQSQNDEDNQGSEKLVEQLDIEETEQSKL KLVEQLDIEETEQSKLPQYLERFKALHSKL K L V S K L 0 0 0 1 0 2 4 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 14 0 1659.8203 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;B4DKI9;D6RH20;Q8N6F2 Q6PKB3 121 134 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 4.7386E-24 134.75 5 2 1.7297 1.3545 0.35087 2 Median NaN NaN NaN 0 0 Median 1.7297 1.3545 0.35087 2 0 Median 17921000 2394900 15526000 11154000 0 11154000 6767300 2394900 4372400 9206 305 9419 24405;24406;24407;24408;24409;24410;24411 38244;38245;38246;38247;38248;38249;38250;38251;38252;38253;38254 38250 11 LVESDAEAEAVR KANPHNYDAWFDYLRLVESDAEAEAVREVY YLRLVESDAEAEAVREVYERAIANVPPIQE R L V V R E 3 1 0 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1287.6307 Q69YP1;Q5JY65;Q9BZJ0;Q8IXG0 Q69YP1 380 391 DKFZp762M013;CRNKL1;crn Crooked neck-like protein 1 yes no 2 0.00011875 94.692 1 1 1.1034 1.0602 13.439 2 Median 1.1551 1.1659 NaN 1 0 Median 1.054 0.96412 NaN 1 0 Median 16109000 7191600 8917600 15522000 6876400 8645900 586870 315160 271710 9207 1810 9420 24412;24413 38255;38256 38255 2 LVETDFSTPTPR HKSNGGIVWGNIKKKLVETDFSTPTPRRKT KKKLVETDFSTPTPRRKTPFNTDLGENSGI K L V P R R 0 1 0 1 0 0 1 0 0 0 1 0 0 1 2 1 3 0 0 1 0 0 12 0 1361.6827 Q6P0N0 Q6P0N0 1080 1091 MIS18BP1 Mis18-binding protein 1 yes yes 2 1.3289E-06 98.249 3 2 1.4593 1.2545 4.5179 2 Median NaN NaN NaN 0 0 Median 1.4593 1.2545 4.5179 2 0 Median 30860000 26355000 4505200 23470000 23470000 0 7390100 2884900 4505200 9208 1849 9421 24414;24415;24416;24417;24418 38257;38258;38259;38260;38261 38259 5 LVETLEDQELK EELRQHAACKLDLQKLVETLEDQELKENVE DLQKLVETLEDQELKENVEIICNLQQLITQ K L V L K E 0 0 0 1 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1315.6871 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 453 463 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 8.5874E-11 136.63 2 2 1.1615 1.1203 10.119 4 Median 0.89932 1.017 3.4915 2 0 Median 1.4771 1.2075 0.42434 2 0 Median 299000000 141120000 157880000 243640000 118240000 125400000 55357000 22875000 32482000 9209 1803 9422 24419;24420;24421;24422 38262;38263;38264;38265;38266;38267;38268;38269;38270;38271 38262 10 LVEVDSGR YEEEINETRRKHETRLVEVDSGRQIEYEYK RRKHETRLVEVDSGRQIEYEYKLAQALHEM R L V G R Q 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 873.4556 P20700;E9PBF6;A0A0D9SFE5;Q6DC98 P20700 227 234 LMNB1 Lamin-B1 yes no 2 0.013769 71.501 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11783000 0 11783000 11783000 0 11783000 0 0 0 9210 1502 9423 24423 38272 38272 1 LVFAAYGNVFSAFAR NSVPQDICCMAADGRLVFAAYGNVFSAFAR LVFAAYGNVFSAFARNKEIVHTFKGHKAEI R L V A R N 4 1 1 0 0 0 0 1 0 0 1 0 0 3 0 1 0 0 1 2 0 0 15 0 1631.846 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 80 94 WDR36 WD repeat-containing protein 36 yes no 2 4.6388E-10 113.22 2 0.83528 0.83776 2.5154 2 Median 0.83528 0.83776 2.5154 2 0 Median NaN NaN NaN 0 0 Median 34409000 17454000 16955000 34409000 17454000 16955000 0 0 0 9211 486 9424 24424;24425 38273;38274;38275;38276;38277 38274 5 LVFLGEQSVGK MSTGGDFGNPLRKFKLVFLGEQSVGKTSLI RKFKLVFLGEQSVGKTSLITRFMYDSFDNT K L V G K T 0 0 0 0 0 1 1 2 0 0 2 1 0 1 0 1 0 0 0 2 0 0 11 0 1175.655 Q6FGX3;Q53ET8;A0A024R5J5;A0A024R5H8;P20340;Q6AZ91;Q9NRW1;F5H3K7;C9J0I2;F5GX61 Q6FGX3 16 26 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B yes no 2 0.00054053 83.948 2 1.5873 1.6077 NaN 1 Median 1.5873 1.6077 NaN 1 0 Median NaN NaN NaN 0 0 Median 20330000 4585300 15744000 20330000 4585300 15744000 0 0 0 9212 182 9425 24426;24427 38278;38279 38279 2 LVFLGLDNAGK SSVLQFLGLYKKSGKLVFLGLDNAGKTTLL KSGKLVFLGLDNAGKTTLLHMLKDDRLGQH K L V G K T 1 0 1 1 0 0 0 2 0 0 3 1 0 1 0 0 0 0 0 1 0 0 11 0 1145.6445 Q8NG23;Q6FID4;Q5SQT9;Q9NR31;X1WI22;D6RAA2;Q5SQT8;D6RDB2;D6RD69;Q53F37;B2R679;Q9Y6B6 Q8NG23 28 38 SARA1;SAR1A;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b yes no 2 0.0017968 80.688 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21200000 0 21200000 21200000 0 21200000 0 0 0 9213 1815 9426 24428 38280 38280 1 LVFPGAQR RDPSSRLKMFAKELKLVFPGAQRMNRGRHE MFAKELKLVFPGAQRMNRGRHEVGALVRAC K L V Q R M 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 886.50249 H0Y714;Q96G21;B8ZZ47;E7ENR5;B9A008 H0Y714 95 102 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.0059854 88.734 1 1 1.0657 1.0376 3.6527 2 Median 0.93184 1.0647 NaN 1 0 Median 1.2187 1.0111 NaN 1 0 Median 95496000 48530000 46966000 89980000 46096000 43885000 5515400 2434600 3080800 9214 1286 9427 24429;24430 38281;38282 38281 2 LVFSNVNLK ACSDRPTVIYSSNHKLVFSNVNLKEVNYMC YSSNHKLVFSNVNLKEVNYMCPLNSDGYPD K L V L K E 0 0 2 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 2 0 0 9 0 1032.5968 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 666 674 DDB1 DNA damage-binding protein 1 yes no 2 2.2949E-05 115.69 2 2 0.94317 0.91307 14.312 4 Median 0.70837 0.80564 0.73615 2 0 Median 1.2706 1.0321 0.36694 2 0 Median 365550000 201470000 164080000 305920000 173820000 132100000 59628000 27652000 31976000 9215 1770 9428 24431;24432;24433;24434 38283;38284;38285;38286;38287;38288;38289 38284 7 LVGDVDFEGVR VGINRVHDPVTAKPKLVGDVDFEGVRQKAG AKPKLVGDVDFEGVRQKAGYITPVPGGVGP K L V V R Q 0 1 0 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 3 0 0 11 0 1204.6088 B2R7W0;P13995;B4DY35;B9A062 B2R7W0 283 293 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 2 0.0030546 68.657 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17380000 0 17380000 17380000 0 17380000 0 0 0 9216 853 9429 24435 38290 38290 1 LVGIISSR FCGIPITDTGRMGSRLVGIISSRDIDFLKE TGRMGSRLVGIISSRDIDFLKEEEHDCFLE R L V S R D 0 1 0 0 0 0 0 1 0 2 1 0 0 0 0 2 0 0 0 1 0 0 8 0 843.5178 H0Y4R1;P12268;B7Z1G4;Q6QE17;E7ETK5 H0Y4R1 86 93 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.0092293 75.213 2 1.3119 1.485 3.6728 2 Median 1.3119 1.485 3.6728 2 0 Median NaN NaN NaN 0 0 Median 200940000 86586000 114350000 200940000 86586000 114350000 0 0 0 9217 1282 9430 24436;24437 38291;38292 38291 2 LVGLESFSLAFASVQK LLKNLSQEIIELLKKLVGLESFSLAFASVQ VGLESFSLAFASVQKQANEKRALRKKRKAL K L V Q K Q 2 0 0 0 0 1 1 1 0 0 3 1 0 2 0 3 0 0 0 2 0 0 16 0 1694.9243 O75691;B4DN27 O75691 2703 2718 UTP20 Small subunit processome component 20 homolog yes no 2 9.1628E-06 87.001 2 1.2491 1.2594 7.9266 2 Median 1.2491 1.2594 7.9266 2 0 Median NaN NaN NaN 0 0 Median 16434000 8682800 7751200 16434000 8682800 7751200 0 0 0 9218 1412 9431 24438;24439 38293;38294 38293 2 LVGQGASAVLLDLPNSGGEAQAK ITGGASGLGLATAERLVGQGASAVLLDLPN VLLDLPNSGGEAQAKKLGNNCVFAPADVTS R L V A K K 4 0 1 1 0 2 1 4 0 0 4 1 0 0 1 2 0 0 0 2 0 0 23 0 2194.1594 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 30 52 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 9.3378E-30 131.56 2 2 2.0549 2.3122 40.966 4 Linear 2.0498 2.3052 1.1476 2 0 Median 1.4218 1.1347 3.0065 2 0 Median 172640000 56468000 116170000 137600000 41910000 95689000 35043000 14559000 20485000 9219 555 9432 24440;24441;24442;24443 38295;38296;38297;38298;38299;38300;38301;38302 38297 8 LVGQSIIAYLQK NRKYDEVLHMVRNAKLVGQSIIAYLQKKGY NAKLVGQSIIAYLQKKGYPEVALHFVKDEK K L V Q K K 1 0 0 0 0 2 0 1 0 2 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1331.7813 P53621 P53621 620 631 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 1.8864E-12 125.48 2 2 1.1008 1.0368 46.978 4 Median 1.4544 1.5357 2.4325 2 0 Median 0.84574 0.68244 6.0295 2 0 Median 86199000 38863000 47336000 70061000 30276000 39786000 16138000 8587200 7550600 9220 1607 9433 24444;24445;24446;24447 38303;38304;38305;38306;38307;38308;38309;38310 38303 8 LVGSVNLFSDENVPR LFLLAQQKVPSKLKKLVGSVNLFSDENVPR LVGSVNLFSDENVPRLVNVLKMAASSVKKD K L V P R L 0 1 2 1 0 0 1 1 0 0 2 0 0 1 1 2 0 0 0 3 0 0 15 0 1644.8471 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 232 246 MYBBP1A Myb-binding protein 1A yes no 2 2.5115E-30 151.98 2 2 0.92777 0.98671 7.0725 4 Linear 0.86637 0.97719 2.8839 2 0 Median 1.0097 0.86806 1.2277 2 0 Median 230110000 119890000 110210000 167530000 89306000 78220000 62583000 30589000 31994000 9221 1997 9434 24448;24449;24450;24451 38311;38312;38313;38314;38315;38316;38317 38311 7 LVHIIGALR SPDSIHSVAPENEGRLVHIIGALRTSKLLS PENEGRLVHIIGALRTSKLLSDPNYGVHLP R L V L R T 1 1 0 0 0 0 0 1 1 2 2 0 0 0 0 0 0 0 0 1 0 0 9 0 990.63383 A0A024R2F9;Q9BTV4;A0A0S2Z5N2;Q8TEP9 A0A024R2F9 88 96 TMEM43;FLJ00144 Transmembrane protein 43 yes no 3 0.0089555 44.349 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8854700 8854700 0 8854700 8854700 0 0 0 0 9222 110 9435 24452;24453 38318;38319 38318 2 LVHLPSCTVFSNFPVIK EILAIASEKMKEAVRLVHLPSCTVFSNFPV HLPSCTVFSNFPVIKNKNISHVHTMDFSPR R L V I K N 0 0 1 0 1 0 0 0 1 1 2 1 0 2 2 2 1 0 0 3 0 0 17 0 1957.0495 B2RAX6;Q9Y5J1 B2RAX6 477 493 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 1.534E-05 77.746 2 2 1.1193 1.0812 15.114 4 Median 0.84246 0.92742 13.898 2 0 Median 1.3944 1.1569 1.7807 2 0 Median 188880000 95722000 93155000 107740000 56283000 51456000 81137000 39439000 41699000 9223 876 9436 24454;24455;24456;24457 38320;38321;38322;38323;38324;38325;38326;38327 38325 8 LVHSAVDVPTIQEK LNKKGKDNKHPMYRRLVHSAVDVPTIQEKV RLVHSAVDVPTIQEKVNEGKYRSYEEFKAD R L V E K V 1 0 0 1 0 1 1 0 1 1 1 1 0 0 1 1 1 0 0 3 0 0 14 0 1534.8355 Q15326;J3QKD2;Q5BJG6;B7Z3W2;B0QZE2;B7Z2J6;Q6PJR5;A0A0A0MRY2;Q5UGI2 Q15326 191 204 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 0.00053009 51.658 1 1 1.6683 1.487 5.6208 2 Median 1.4113 1.4291 NaN 1 0 Median 1.972 1.5473 NaN 1 0 Median 32979000 14025000 18953000 29166000 12168000 16998000 3812100 1857200 1954900 9224 1758 9437 24458;24459 38328;38329 38328 2 LVIASTLYEDGTLDDGEYNPTDDRPSR VNIQIYPVDLGDKFRLVIASTLYEDGTLDD LDDGEYNPTDDRPSRADQFEYVMYGKVYRI R L V S R A 1 2 1 5 0 0 2 2 0 1 3 0 0 0 2 2 3 0 2 1 0 0 27 1 3011.3996 C9JLU1;P52434 C9JLU1 58 84 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 3 1.5157E-10 57.578 2 2 1.3999 1.6461 31.471 4 Linear 1.2794 1.4292 17.982 2 0 Median 0.97343 0.85466 2.0156 2 0 Median 98592000 48069000 50523000 87649000 43642000 44007000 10944000 4427000 6516500 9225 1138 9438 24460;24461;24462;24463 38330;38331;38332;38333;38334;38335;38336 38332 7 LVIDVIR VKPTDEKLRELKGAKLVIDVIRYEPPHIKK LRELKGAKLVIDVIRYEPPHIKKALQYACG K L V I R Y 0 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 7 0 826.52764 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709 Q14683 593 599 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.032902 64.803 1 0.86712 0.89127 NaN 1 Median 0.86712 0.89127 NaN 1 0 Median NaN NaN NaN 0 0 Median 25323000 12812000 12512000 25323000 12812000 12512000 0 0 0 9226 1739 9439 24464 38337 38337 1 LVIECGADCNILSK ALMKACKRGNSDIVRLVIECGADCNILSKH RLVIECGADCNILSKHQNSALHFAKQSNNV R L V S K H 1 0 1 1 2 0 1 1 0 2 2 1 0 0 0 1 0 0 0 1 0 0 14 0 1590.7746 Q99549 Q99549 685 698 MPHOSPH8 M-phase phosphoprotein 8 yes yes 2 0.0015839 71.555 1 2 1.4384 1.1442 7.1463 2 Median NaN NaN NaN 0 0 Median 1.4384 1.1442 7.1463 2 0 Median 8376000 3345700 5030300 0 0 0 8376000 3345700 5030300 9227 1994 9440 24465;24466;24467 38338;38339;38340 38338 3 LVIEEAER SPGKTVTIVVRGSNKLVIEEAERSIHDALC VVRGSNKLVIEEAERSIHDALCVIRCLVKK K L V E R S 1 1 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 957.51311 B7Z9L0;A8K3C3;P50991;B7Z2F4;B7Z2Z8 B7Z9L0 340 347 CCT4 T-complex protein 1 subunit delta yes no 2 0.008243 79.469 1 2.8239 3.0442 NaN 1 Median 2.8239 3.0442 NaN 1 0 Median NaN NaN NaN 0 0 Median 48005000 12374000 35631000 48005000 12374000 35631000 0 0 0 9228 721 9441 24468 38341;38342 38341 2 LVIIEGDLER IAEEADRKYEEVARKLVIIEGDLERTEERA EVARKLVIIEGDLERTEERAELAESRCREM K L V E R T 0 1 0 1 0 0 2 1 0 2 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1155.6499 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;Q8NAG3;B4DWT5;Q5VU61;A0A087WWU8;J3KN67;M1VPF4;P06753;Q6LDX7;Q5VU62;B4DQ80;Q8NAH0 Q5HYB6 117 126 DKFZp686J1372;TPM3;TPM3-ROS1;HEL-S-82p Tyrosine-protein kinase receptor;Tropomyosin alpha-3 chain yes no 2 0.00023767 78.334 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9229 562 9442 24469;24470;24471 38343;38344;38345 38344 3 LVIIESDLER IAEDADRKYEEVARKLVIIESDLERAEERA EVARKLVIIESDLERAEERAELSEGQVRQL K L V E R A 0 1 0 1 0 0 2 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1185.6605 Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;Q59GR8;H0YKX5;Q8TCG4;H0YNC7;Q15657;H0YL52;D9YZV5;D9YZV4;A0A0S2Z4G6;A0A0K0K1I0;A0A024R5W6;Q6ZN40;P09493;H0YK20;H0YL42 Q1ZYL5 133 142 TPM1 Tropomyosin alpha-1 chain yes no 2 0.0095327 63.816 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4960700 0 4960700 4960700 0 4960700 0 0 0 9230 1094 9443 24472 38346 38346 1 LVILANNCPALR GYKQTLKMIRQGKAKLVILANNCPALRKSE KAKLVILANNCPALRKSEIEYYAMLAKTGV K L V L R K 2 1 2 0 1 0 0 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1352.7598 E5RI99;A0A024R9D3;P62888;E5RJH3 E5RI99 45 56 RPL30 60S ribosomal protein L30 yes no 2 4.0924E-29 163.72 3 5 0.8516 0.85281 9.5827 6 Median 0.72923 0.85281 2.6137 2 0 Median 0.94185 0.81447 11.969 4 0 Median 730910000 410820000 320090000 589160000 336150000 253010000 141750000 74670000 67085000 9231 276 9444 24473;24474;24475;24476;24477;24478;24479;24480 38347;38348;38349;38350;38351;38352;38353;38354;38355;38356;38357;38358;38359;38360;38361;38362;38363;38364;38365;38366 38354 20 LVILANNCPALRK GYKQTLKMIRQGKAKLVILANNCPALRKSE AKLVILANNCPALRKSEIEYYAMLAKTGVH K L V R K S 2 1 2 0 1 0 0 0 0 1 3 1 0 0 1 0 0 0 0 1 0 0 13 1 1480.8548 E5RI99;A0A024R9D3;P62888 E5RI99 45 57 RPL30 60S ribosomal protein L30 yes no 3 0.0051047 35.677 2 0.92856 0.77533 3.9474 2 Median NaN NaN NaN 0 0 Median 0.92856 0.77533 3.9474 2 0 Median 7856100 3986300 3869800 0 0 0 7856100 3986300 3869800 9232 276 9445 24481;24482 38367;38368;38369 38367 3 LVILEGELER MKDEEKMEIQEVARKLVILEGELERAEERA EVARKLVILEGELERAEERAEVSELKCGDL K L V E R A 0 1 0 0 0 0 3 1 0 1 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1169.6656 B4DVY2;V9HW56;P67936;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951;K7EMU5;U3KQK2;K7ERG3;K7ENT6;B4DGC2;K7EPV9;B4E3P1 B4DVY2 114 123 HEL-S-108;TPM4;HEL-S-273;TPM2;TPM2b Tropomyosin alpha-4 chain;Tropomyosin beta chain yes no 2 0.0010279 77.355 2 1.7975 1.8877 8.3141 2 Median 1.7975 1.8877 8.3141 2 0 Median NaN NaN NaN 0 0 Median 53664000 19750000 33914000 53664000 19750000 33914000 0 0 0 + 9233 1043 9446 24483;24484 38370;38371;38372 38371 3 LVINGNPITIFQER THGKFHGTVKAENGKLVINGNPITIFQERD KLVINGNPITIFQERDPSKIKWGDAGAEYV K L V E R D 0 1 2 0 0 1 1 1 0 3 1 0 0 1 1 0 1 0 0 1 0 0 14 0 1612.8937 V9HVZ4;P04406;Q2TSD0;Q0QET7;B4DRV9 V9HVZ4 67 80 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 1.4705E-06 108.35 2 2 1.74 1.6933 46.909 4 Median 2.1568 2.4847 0.82896 2 0 Median 1.3203 1.1058 6.8527 2 0 Median 385000000 126170000 258830000 347640000 110610000 237030000 37353000 15554000 21800000 9234 1442 9447 24485;24486;24487;24488 38373;38374;38375;38376;38377;38378;38379;38380;38381 38374 9 LVINGNPITIFQERDPSK THGKFHGTVKAENGKLVINGNPITIFQERD NGNPITIFQERDPSKIKWGDAGAEYVVEST K L V S K I 0 1 2 1 0 1 1 1 0 3 1 1 0 1 2 1 1 0 0 1 0 0 18 1 2040.1004 V9HVZ4;P04406;Q2TSD0;Q0QET7;B4DRV9 V9HVZ4 67 84 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3 4.1227E-08 90.793 2 2 2.2356 2.2394 44.932 4 Median 2.8832 3.3908 9.5892 2 0 Median 1.8393 1.5666 1.4583 2 0 Median 112650000 32683000 79971000 90587000 24785000 65802000 22066000 7897500 14169000 9235 1442 9448 24489;24490;24491;24492 38382;38383;38384;38385;38386;38387 38386 6 LVINTEEVFRPYAK GNPIVPLNIRLFLAKLVINTEEVFRPYAKH KLVINTEEVFRPYAKHWLSPLLQLAASENN K L V A K H 1 1 1 0 0 0 2 0 0 1 1 1 0 1 1 0 1 0 1 2 0 0 14 1 1677.909 P78527 P78527 2149 2162 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.8453E-05 93.206 2 3 0.33302 0.29086 54.885 5 Median 0.60105 0.71474 2.4866 2 0 Median 0.316 0.26859 10.197 3 0 Median 212020000 133020000 78993000 153910000 89745000 64165000 58107000 43278000 14829000 9236 1665 9449 24493;24494;24495;24496;24497 38388;38389;38390;38391;38392;38393;38394;38395;38396;38397 38390 10 LVIQDK RRRREGKTDYYARKRLVIQDKNKYNTPKYR KTDYYARKRLVIQDKNKYNTPKYRMIVRVT R L V D K N 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 6 0 714.42759 A2RUM7;P46777;Q59GX9;Q9BUV4;R4GNJ2 A2RUM7 36 41 RPL5 60S ribosomal protein L5 yes no 2 0.040187 107.65 1 0.84872 0.95536 NaN 1 Median 0.84872 0.95536 NaN 1 0 Median NaN NaN NaN 0 0 Median 73051000 39339000 33711000 73051000 39339000 33711000 0 0 0 9237 653 9450 24498 38398 38398 1 LVISHEEELIPLHK KGPTFRISGVQVNAKLVISHEEELIPLHKS KLVISHEEELIPLHKSIPSDPEERKQYTIP K L V H K S 0 0 0 0 0 0 3 0 2 2 3 1 0 0 1 1 0 0 0 1 0 0 14 0 1655.9247 O14646 O14646 1213 1226 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 0.0001534 60.401 2 0.81565 0.64976 1.3468 2 Median NaN NaN NaN 0 0 Median 0.81565 0.64976 1.3468 2 0 Median 8664400 4568700 4095700 0 0 0 8664400 4568700 4095700 9238 1366 9451 24499;24500 38399;38400;38401 38401 3 LVIVDGIAFPFR ______________________________ ______________________________ R L V F R H 1 1 0 1 0 0 0 1 0 2 1 0 0 2 1 0 0 0 0 2 0 0 12 0 1345.7758 J3QLQ2;J3QR58;H7C1R0;B4E0G0;J3QKK3;O43502 J3QLQ2 3 14 RAD51C DNA repair protein RAD51 homolog 3 yes no 2 0.00022873 83.783 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9239 1062 9452 24501 38402 38402 1 LVIVGDGACGK ______________________________ IRKKLVIVGDGACGKTCLLIVFSKDQFPEV K L V G K T 1 0 0 1 1 0 0 3 0 1 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1087.5696 B4DKN9;Q5JR08;A0A024R324;A0A024R0I3;P61586;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;E9PLA2;C9JRM1;Q5JR06;E9PN11;U3KQA9;U3KQV3 B4DKN9 8 18 RHOC;RHOA;hCG_2043376 Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 2 0.00018048 93.649 2 1 1.6568 1.846 58.663 3 Median 1.7477 1.934 6.5852 2 0 Median 0.90023 0.70238 NaN 1 0 Median 105710000 40531000 65178000 103600000 39563000 64035000 2111900 968100 1143800 9240 48 9453 24502;24503;24504 38403;38404;38405;38406;38407 38405 5 LVIVSLMELFK MLMEQDPDVAVTVRKLVIVSLMELFKDITP TVRKLVIVSLMELFKDITPSYKIRPLTEAE K L V F K D 0 0 0 0 0 0 1 0 0 1 3 1 1 1 0 1 0 0 0 2 0 0 11 0 1290.7621 A8K905;Q8WTT2 A8K905 257 267 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.0066641 47.187 1 1.6977 1.6945 NaN 1 Median 1.6977 1.6945 NaN 1 0 Median NaN NaN NaN 0 0 Median 6522100 2457200 4064900 6522100 2457200 4064900 0 0 0 9241 780 9454 24505 38408 38408 609 1 LVLADLLEPVK KVSEFNVSSEGSGEKLVLADLLEPVKTSSS SGEKLVLADLLEPVKTSSSLATVKKQLSRV K L V V K T 1 0 0 1 0 0 1 0 0 0 4 1 0 0 1 0 0 0 0 2 0 0 11 0 1208.738 Q9BVJ6;B4E343;O60531 Q9BVJ6 85 95 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 6.628E-08 114.84 2 2 1.2557 1.2087 3.915 4 Median 1.0398 1.1677 4.0863 2 0 Median 1.4861 1.2296 1.6205 2 0 Median 249270000 120260000 129010000 170250000 87294000 82952000 79021000 32963000 46059000 9242 2008 9455 24506;24507;24508;24509 38409;38410;38411;38412;38413;38414;38415;38416 38409 8 LVLDEDEETKEPLVQVHR EIEDASPTKCPITTKLVLDEDEETKEPLVQ DEDEETKEPLVQVHRNMVIKLKPHQVDGVQ K L V H R N 0 1 0 2 0 1 4 0 1 0 3 1 0 0 1 0 1 0 0 3 0 0 18 1 2148.1063 A4LAA3;P46100 A4LAA3 1537 1554 ATRX Transcriptional regulator ATRX yes no 4 0.058463 9.4152 1 1.5663 1.2924 NaN 1 Median NaN NaN NaN 0 0 Median 1.5663 1.2924 NaN 1 0 Median 5352100 1855800 3496300 0 0 0 5352100 1855800 3496300 9243 672 9456 24510 38417 38417 1 LVLDPYLLK IGTKMQKTAKVRVTRLVLDPYLLKYFNKRK KVRVTRLVLDPYLLKYFNKRKTYFAHDALQ R L V L K Y 0 0 0 1 0 0 0 0 0 0 4 1 0 0 1 0 0 0 1 1 0 0 9 0 1072.6532 E9PE17;Q8IY71;I3L0E3;Q9Y2R5 E9PE17 33 41 MRPS17;hCG_1984214 28S ribosomal protein S17, mitochondrial yes no 2 0.0056953 66.073 2 1 1.2111 1.1346 10.388 2 Median 1.1795 1.221 NaN 1 0 Median 1.2435 1.0542 NaN 1 0 Median 17421000 5632900 11788000 15948000 5022500 10925000 1473000 610420 862530 9244 1232 9457 24511;24512;24513 38418;38419;38420;38421;38422 38421 5 LVLEMVHHNTASLEK VAELLKEEFPAWYEKLVLEMVHHNTASLEK LVLEMVHHNTASLEKLVDTAWLEIMTKYAV K L V E K L 1 0 1 0 0 0 2 0 2 0 3 1 1 0 0 1 1 0 0 2 0 0 15 0 1719.8978 Q9UIG0 Q9UIG0 87 101 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.00068566 54.812 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2224100 0 2224100 0 0 0 2224100 0 2224100 9245 2103 9458;9459 24514;24515 38423;38424 38423 1930 2 LVLILNK CPQVEEAIVQSGQKKLVLILNKSDLVPKEN IVQSGQKKLVLILNKSDLVPKENLESWLNY K L V N K S 0 0 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 7 0 811.55312 A0A024R2Z6;Q9BVP2 A0A024R2Z6 161 167 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0125 105.42 2 1 0.81761 0.913 1.1197 3 Median 0.81435 0.91233 0.10302 2 0 Median 1.1418 0.93016 NaN 1 0 Median 145280000 79795000 65483000 132380000 73503000 58876000 12899000 6291600 6607200 9246 125 9460 24516;24517;24518 38425;38426;38427;38428;38429;38430;38431 38426 7 LVLLGESAVGK RPNGPAAGNKICQFKLVLLGESAVGKSSLV CQFKLVLLGESAVGKSSLVLRFVKGQFHEY K L V G K S 1 0 0 0 0 0 1 2 0 0 3 1 0 0 0 1 0 0 0 2 0 0 11 0 1084.6492 A0A024R1U4;P51148;F8VVK3;K7ERI8;K7ERQ8;F8WCY6;F8WD79;F8VPW9;F8VSF8;F8VWZ7;F8VWU4;F8VVZ0;F8VUA5;A0A0A1HAN9;A0A024RB09;P61020 A0A024R1U4 24 34 RAB5C;RAB5A;RAB5B Ras-related protein Rab-5C;Ras-related protein Rab-5B no no 2 0.00093586 71.349 2 1.3947 1.4735 1.8142 2 Median 1.3947 1.4735 1.8142 2 0 Median NaN NaN NaN 0 0 Median 67504000 29462000 38043000 67504000 29462000 38043000 0 0 0 9247 92 9461 24519;24520 38432;38433;38434 38433 3 LVLMSATGDNER LILLKGLQRLNPALRLVLMSATGDNERFSR ALRLVLMSATGDNERFSRYFGGCPVIKVPG R L V E R F 1 1 1 1 0 0 1 1 0 0 2 0 1 0 0 1 1 0 0 1 0 0 12 0 1304.6395 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 559 570 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 8.9152E-05 75.509 4 1.2367 1.2504 42.343 3 Median 1.2367 1.2504 42.343 3 0 Median NaN NaN NaN 0 0 Median 47183000 11639000 35544000 47183000 11639000 35544000 0 0 0 9248 122 9462 24521;24522;24523;24524 38435;38436;38437;38438 38435 106 3 LVLPAPQISDAELQEVVK LQTSGVSEFTKKRSKLVLPAPQISDAELQE PAPQISDAELQEVVKVGQASEIARQTAEES K L V V K V 2 0 0 1 0 2 2 0 0 1 3 1 0 0 2 1 0 0 0 3 0 0 18 0 1948.0881 B4DSH1;B3KY60;Q99459 B4DSH1 268 285 CDC5L Cell division cycle 5-like protein yes no 2 6.4114E-05 53.754 2 2 1.0889 1.0263 7.4996 4 Median 0.98123 1.0263 7.651 2 0 Median 1.2577 1.0091 10.36 2 0 Median 43570000 22288000 21282000 34782000 18284000 16498000 8788500 4003600 4784900 9249 957 9463 24525;24526;24527;24528 38439;38440;38441;38442;38443;38444;38445 38442 7 LVLPPPDPLDLPLR ______________________________ RLVLPPPDPLDLPLRAVELGCTGHWELLNL R L V L R A 0 1 0 2 0 0 0 0 0 0 5 0 0 0 5 0 0 0 0 1 0 0 14 0 1553.9181 B4DSY1;Q9NPK3;Q96BC0;O76046;Q15477;A0A024RCU1;F8WDE8;B4DF09;B4E0B4 B4DSY1 7 20 SKIV2L;SKI2W Helicase SKI2W yes no 2 0.00036505 61.353 2 2.0963 2.157 3.595 2 Median 2.0963 2.157 3.595 2 0 Median NaN NaN NaN 0 0 Median 10063000 3440600 6622400 10063000 3440600 6622400 0 0 0 9250 1031 9464 24529;24530 38446;38447;38448;38449 38446 4 LVLPSNTPNVR SKQSKVIPKNRIHHKLVLPSNTPNVRRTKR IHHKLVLPSNTPNVRRTKRTRLKPLEYWRG K L V V R R 0 1 2 0 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 2 0 0 11 0 1208.6877 Q03188;H0Y8J2;H0Y9W1 Q03188 728 738 CENPC Centromere protein C yes no 2 0.00041576 80.239 2 2 0.83162 0.80585 26.371 4 Median 0.57581 0.63609 7.6338 2 0 Median 1.1791 0.99603 4.143 2 0 Median 108020000 66849000 41171000 95847000 61329000 34518000 12173000 5519300 6653600 9251 1681 9465 24531;24532;24533;24534 38450;38451;38452;38453;38454;38455;38456 38450 7 LVLSFDEEK RNKKKKRDGDDRRPRLVLSFDEEKRREYLT DDRRPRLVLSFDEEKRREYLTGFHKRKVER R L V E K R 0 0 0 1 0 0 2 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1078.5546 B4DGP7;V9GYY5;A0A024R1M6;Q9UGY1;B3KQ09 B4DGP7 18 26 MGC3731;NOL12 Nucleolar protein 12 yes no 2 0.00028235 103.56 2 1 0.81588 0.91594 2.9458 3 Median 0.81052 0.91128 0.72223 2 0 Median 1.1772 0.95824 NaN 1 0 Median 132800000 64014000 68782000 125560000 60420000 65136000 7240600 3594300 3646300 9252 80 9466 24535;24536;24537 38457;38458;38459;38460;38461;38462 38458 6 LVLSLQPIPLK HIFLLILRALQLLTRLVLSLQPIPLKSATA LLTRLVLSLQPIPLKSATAKGKKPSKERLT R L V L K S 0 0 0 0 0 1 0 0 0 1 4 1 0 0 2 1 0 0 0 1 0 0 11 0 1219.7904 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPK4 A0A024R2M8 315 325 XPC DNA repair protein complementing XP-C cells yes no 2 1.6603E-12 143.28 2 2 0.71238 0.6588 8.7858 4 Median 0.56071 0.62058 0.78898 2 0 Median 0.90036 0.71766 4.4418 2 0 Median 148720000 88521000 60203000 106960000 66378000 40585000 41761000 22143000 19617000 9253 118 9467 24538;24539;24540;24541 38463;38464;38465;38466;38467;38468;38469;38470 38470 8 LVLSTLSGR AHSLSYAGCNFLRQRLVLSTLSGRPVKIRK NFLRQRLVLSTLSGRPVKIRKIRARDDNPG R L V G R P 0 1 0 0 0 0 0 1 0 0 3 0 0 0 0 2 1 0 0 1 0 0 9 0 944.56548 Q9Y2P8;Q5VYW8 Q9Y2P8 20 28 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 0.0089883 60.59 1 0.79876 0.83563 NaN 1 Median 0.79876 0.83563 NaN 1 0 Median NaN NaN NaN 0 0 Median 12907000 6903800 6003400 12907000 6903800 6003400 0 0 0 9254 2125 9468 24542 38471 38471 1 LVLSTLSGRPVK AHSLSYAGCNFLRQRLVLSTLSGRPVKIRK RQRLVLSTLSGRPVKIRKIRARDDNPGLRD R L V V K I 0 1 0 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 0 2 0 0 12 1 1268.7816 Q9Y2P8;Q5VYW8 Q9Y2P8 20 31 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2;3 0.00034412 71.555 4 4 1.1313 1.1174 4.7405 8 Median 0.93812 1.0529 4.5942 4 0 Median 1.3504 1.1388 1.859 4 0 Median 213100000 105540000 107550000 175450000 89053000 86398000 37644000 16489000 21155000 9255 2125 9469 24543;24544;24545;24546;24547;24548;24549;24550 38472;38473;38474;38475;38476;38477;38478;38479;38480;38481;38482;38483 38473 11 LVLVGDGGTGK ______________________________ VQFKLVLVGDGGTGKTTFVKRHLTGEFEKK K L V G K T 0 0 0 1 0 0 0 4 0 0 2 1 0 0 0 0 1 0 0 2 0 0 11 0 1014.571 B5MDF5;P62826;J3KQE5;H0YFC6;Q96QB7;Q0EFC9 B5MDF5 13 23 RAN;TC4 GTP-binding nuclear protein Ran yes no 2 5.7131E-08 116.3 2 2 2.2881 2.7085 53.9 4 Linear 2.2379 2.6121 3.4914 2 0 Median 1.2717 1.0276 0.85958 2 0 Median 579530000 183270000 396250000 529920000 162050000 367870000 49611000 21226000 28384000 9256 1082 9470 24551;24552;24553;24554 38484;38485;38486;38487;38488;38489;38490 38486 7 LVLVLNK FQMEEAVLRAQGNKKLVLVLNKIDLVPKEV LRAQGNKKLVLVLNKIDLVPKEVVEKWLDY K L V N K I 0 0 1 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 7 0 797.53747 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 168 174 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.035667 71.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9257 291 9471 24555 38491 38491 1 LVMEEAPESYK KLADMGIAIRVASPKLVMEEAPESYKNVTD ASPKLVMEEAPESYKNVTDVVNTCHDAGIS K L V Y K N 1 0 0 0 0 0 3 0 0 0 1 1 1 0 1 1 0 0 1 1 0 0 11 0 1294.6115 Q9Y3I0 Q9Y3I0 466 476 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 9.346E-05 93.111 2 1.6513 1.8043 12.601 2 Median 1.6513 1.8043 12.601 2 0 Median NaN NaN NaN 0 0 Median 87495000 34899000 52595000 87495000 34899000 52595000 0 0 0 9258 2137 9472 24556;24557 38492;38493;38494 38494 1977 3 LVNELTEFAK FSQYLQQCPFDEHVKLVNELTEFAKTCVAD DEHVKLVNELTEFAKTCVADESHAGCEKSL K L V A K T 1 0 1 0 0 0 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1162.6234 CON__P02769 CON__P02769 66 75 yes yes 2 2.3739E-05 103.55 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26839000 26839000 0 19785000 19785000 0 7054200 7054200 0 + 9259 1153 9473 24558;24559;24560 38495;38496;38497 38495 3 LVNELTEK KQSAELNKLRQDYARLVNELTEKTGKLQQE LRQDYARLVNELTEKTGKLQQEEVQKKNAE R L V E K T 0 0 1 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 944.51786 A0A024R663;Q86UP2 A0A024R663 458 465 KTN1 Kinectin yes no 2 0.043729 52.403 2 0.33574 0.28339 NaN 1 Median NaN NaN NaN 0 0 Median 0.33574 0.28339 NaN 1 0 Median 3186400 2686300 500190 0 0 0 3186400 2686300 500190 9260 197 9474 24561;24562 38498;38499 38499 2 LVNHFVEEFK TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK DFDNRLVNHFVEEFKRKHKKDISQNKRAVR R L V F K R 0 0 1 0 0 0 2 0 1 0 1 1 0 2 0 0 0 0 0 2 0 0 10 0 1260.6503 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4 A8K5I0 237 246 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 0.0055601 47.187 3 0.86503 0.96947 7.3074 3 Median 0.86503 0.96947 7.3074 3 0 Median NaN NaN NaN 0 0 Median 210630000 121510000 89125000 210630000 121510000 89125000 0 0 0 9261 533 9475 24563;24564;24565 38500;38501;38502;38503;38504 38500 5 LVNLQHLDLLNNK LSKNKLQQLPADFGRLVNLQHLDLLNNKLV GRLVNLQHLDLLNNKLVTLPVSFAQLKNLK R L V N K L 0 0 3 1 0 1 0 0 1 0 5 1 0 0 0 0 0 0 0 1 0 0 13 0 1532.8675 Q96AG4 Q96AG4 84 96 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2;3 4.4167E-19 112.44 3 3 0.8163 0.76094 29.114 6 Median 0.8935 1.02 4.5745 3 0 Median 0.72462 0.59262 2.0595 3 0 Median 451280000 243400000 207890000 367650000 196340000 171310000 83631000 47052000 36580000 9262 1958 9476 24566;24567;24568;24569;24570;24571 38505;38506;38507;38508;38509;38510;38511;38512;38513;38514;38515 38505 11 LVNPSQYR LPPEAEDGNIEYKLKLVNPSQYRFEHLVTQ NIEYKLKLVNPSQYRFEHLVTQMKWRLQEG K L V Y R F 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 8 0 975.51378 A0A024RD30;Q9BX10;H0Y7A5 A0A024RD30 74 81 GTPBP2 GTP-binding protein 2 yes no 2 0.023811 65.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9263 377 9477 24572 38516 38516 1 LVNQQLLADPLVPPQLTIK IEGANYFQQANELSKLVNQQLLADPLVPPQ QLLADPLVPPQLTIKDFYMTDSISRASQTM K L V I K D 1 0 1 1 0 3 0 0 0 1 5 1 0 0 3 0 1 0 0 2 0 0 19 0 2099.2354 B4DJ81;E5KRK5;P28331;Q9P1A0 B4DJ81 558 576 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.0097226 26.541 1 2.1672 2.1787 NaN 1 Median 2.1672 2.1787 NaN 1 0 Median NaN NaN NaN 0 0 Median 5226000 1853400 3372600 5226000 1853400 3372600 0 0 0 9264 986 9478 24573 38517 38517 1 LVNTINPGAR NNLRESLMQFSKPRKLVNTINPGARFMTTA SKPRKLVNTINPGARFMTTAMYDAREAIIP K L V A R F 1 1 2 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 10 0 1053.5931 A0A024R7L5;A0A024R7L8;Q92900;B3KY55;Q6ZUC8 A0A024R7L5 919 928 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.0005437 85.161 1 3.268 3.3734 NaN 1 Median 3.268 3.3734 NaN 1 0 Median NaN NaN NaN 0 0 Median 20020000 5806700 14213000 20020000 5806700 14213000 0 0 0 9265 231 9479 24574 38518 38518 1 LVPDLLAIVQR QNISWKKTIVTRFLKLVPDLLAIVQRKKKE RFLKLVPDLLAIVQRKKKEGEEEQAINRQT K L V Q R K 1 1 0 1 0 1 0 0 0 1 3 0 0 0 1 0 0 0 0 2 0 0 11 0 1235.7602 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1644 1654 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.7782E-05 105.78 2 2 0.95141 1.1024 11.774 3 Median 0.93017 1.0682 4.4487 2 0 Median 1.4905 1.3002 NaN 1 0 Median 456580000 229870000 226720000 406420000 217850000 188570000 50164000 12015000 38149000 9266 897 9480 24575;24576;24577;24578 38519;38520;38521;38522;38523;38524;38525;38526 38522 8 LVPEEETTASENTEITSER SETKGSMQKSKFKYKLVPEEETTASENTEI EETTASENTEITSERQKEGIKLTIRISSRK K L V E R Q 1 1 1 0 0 0 6 0 0 1 1 0 0 0 1 2 4 0 0 1 0 0 19 0 2133.9914 Q96T23;H0YCN2 Q96T23 710 728 RSF1 Remodeling and spacing factor 1 yes no 2 9.678E-06 73.887 2 2 0.65544 0.63365 22.167 4 Median 0.48231 0.51029 8.4443 2 0 Median 0.87914 0.74213 0.17164 2 0 Median 77150000 44625000 32525000 62016000 37408000 24608000 15134000 7216900 7916800 9267 1991 9481 24579;24580;24581;24582 38527;38528;38529;38530;38531;38532 38528 6 LVPEEVTSTVTK EESKKKRFSSESKNKLVPEEVTSTVTKSRR KNKLVPEEVTSTVTKSRRISRRPSDWWVVK K L V T K S 0 0 0 0 0 0 2 0 0 0 1 1 0 0 1 1 3 0 0 3 0 0 12 0 1301.7078 Q03188;H0Y8J2 Q03188 508 519 CENPC Centromere protein C yes no 2 0.00082335 65.278 2 2 0.86111 0.78197 22.186 4 Median 0.64525 0.66355 1.0107 2 0 Median 1.1967 0.96661 7.7669 2 0 Median 78314000 43738000 34576000 61708000 36267000 25441000 16606000 7470700 9135000 9268 1681 9482 24583;24584;24585;24586 38533;38534;38535;38536;38537 38534 5 LVPFLWLK SQELIYTFTATFTRRLVPFLWLKWPGTRLL TATFTRRLVPFLWLKWPGTRLLLRP_____ R L V L K W 0 0 0 0 0 0 0 0 0 0 3 1 0 1 1 0 0 1 0 1 0 0 8 0 1014.6266 A0A024RCP3;Q12899 A0A024RCP3 522 529 TRIM26 Tripartite motif-containing protein 26 yes no 2 0.014565 62.714 1 0.55665 0.60064 NaN 1 Median 0.55665 0.60064 NaN 1 0 Median NaN NaN NaN 0 0 Median 3664000 2568200 1095800 3664000 2568200 1095800 0 0 0 9269 365 9483 24587 38538 38538 1 LVPGGGATEIELAK DDGVNTFKVLTRDKRLVPGGGATEIELAKQ RLVPGGGATEIELAKQITSYGETCPGLEQY R L V A K Q 2 0 0 0 0 0 2 3 0 1 2 1 0 0 1 0 1 0 0 1 0 0 14 0 1353.7504 Q7Z759;Q53HU0;P50990 Q7Z759 357 370 CCT8 T-complex protein 1 subunit theta yes no 2 3.6418E-06 101.93 2 4.0211 4.0231 4.0355 2 Median 4.0211 4.0231 4.0355 2 0 Median NaN NaN NaN 0 0 Median 54780000 12727000 42053000 54780000 12727000 42053000 0 0 0 9270 1592 9484 24588;24589 38539;38540;38541;38542 38542 4 LVPGLQDSEEK LNLKLDRVMQDIVYKLVPGLQDSEEKRIRE IVYKLVPGLQDSEEKRIREFYQSRGLDRVT K L V E K R 0 0 0 1 0 1 2 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 11 0 1213.619 Q9BSM1 Q9BSM1 111 121 PCGF1 Polycomb group RING finger protein 1 yes yes 2 0.0026408 72.643 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23653000 23653000 0 23653000 23653000 0 0 0 0 9271 2001 9485 24590;24591 38543;38544 38544 2 LVPLDYGEDDK KFEDEDSDDVPRKRKLVPLDYGEDDKNATK RKRKLVPLDYGEDDKNATKGTVNTEEKRKH K L V D K N 0 0 0 3 0 0 1 1 0 0 2 1 0 0 1 0 0 0 1 1 0 0 11 0 1262.603 P49756 P49756 712 722 RBM25 RNA-binding protein 25 yes yes 2 0.00046386 76.465 1 1.3716 1.3453 NaN 1 Median 1.3716 1.3453 NaN 1 0 Median NaN NaN NaN 0 0 Median 22696000 10563000 12133000 22696000 10563000 12133000 0 0 0 9272 1587 9486 24592 38545;38546 38545 2 LVPLGVNQDLDK FFDNKRTWQWLPRTKLVPLGVNQDLDKEKM RTKLVPLGVNQDLDKEKMLEGRKSNIRKSV K L V D K E 0 0 1 2 0 1 0 1 0 0 3 1 0 0 1 0 0 0 0 2 0 0 12 0 1309.7242 P55201 P55201 1162 1173 BRPF1 Peregrin yes yes 2 0.00077083 66.056 1 0.88118 0.93453 NaN 1 Median 0.88118 0.93453 NaN 1 0 Median NaN NaN NaN 0 0 Median 16154000 8344800 7809700 16154000 8344800 7809700 0 0 0 9273 1616 9487 24593 38547;38548 38548 2 LVPLLLEDGGEAPAALEAALEEK QNVADVSVLQKHLRKLVPLLLEDGGEAPAA GGEAPAALEAALEEKSALEQMRKFLSDPQV K L V E K S 5 0 0 1 0 0 5 2 0 0 6 1 0 0 2 0 0 0 0 1 0 0 23 0 2347.2523 Q14204;B4DSR6 Q14204 37 59 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.002709 29.733 1 2.2995 2.3534 NaN 1 Median 2.2995 2.3534 NaN 1 0 Median NaN NaN NaN 0 0 Median 25638000 9093000 16545000 25638000 9093000 16545000 0 0 0 9274 1729 9488 24594 38549 38549 1 LVPQQLAH KGEAQRCPRCGAHYKLVPQQLAH_______ RCGAHYKLVPQQLAH_______________ K L V A H - 1 0 0 0 0 2 0 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 904.51305 P10606;Q6FHJ9 P10606 122 129 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes no 2 0.0010949 113.82 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110280000 0 0 107460000 0 0 2814200 0 0 9275 1465 9489 24595;24596;24597 38550;38551;38552 38550 3 LVPSCDQTLQEELAR LSPQDINTKWDMVRKLVPSCDQTLQEELAR LVPSCDQTLQEELARQQVNERLRRQFAAQA K L V A R Q 1 1 0 1 1 2 2 0 0 0 3 0 0 0 1 1 1 0 0 1 0 0 15 0 1757.8618 A0A087WSZ2;Q08043 A0A087WSZ2 667 681 ACTN3 Alpha-actinin-3 yes no 3 0.038403 18.833 1 1.0161 1.005 NaN 1 Median 1.0161 1.005 NaN 1 0 Median NaN NaN NaN 0 0 Median 12475000 6553700 5921800 12475000 6553700 5921800 0 0 0 9276 401 9490 24598 38553 38553 1 LVPTAVYQHMK TLFSRKLNGKYRLERLVPTAVYQHMKMHKR RLERLVPTAVYQHMKMHKRILGHLSSVYCV R L V M K M 1 0 0 0 0 1 0 0 1 0 1 1 1 0 1 0 1 0 1 2 0 0 11 0 1285.6853 Q8WWQ0 Q8WWQ0 164 174 PHIP PH-interacting protein yes yes 2 0.00066578 67.993 1 1.5654 1.5339 NaN 1 Median 1.5654 1.5339 NaN 1 0 Median NaN NaN NaN 0 0 Median 21384000 8755000 12630000 21384000 8755000 12630000 0 0 0 9277 1942 9491 24599 38554;38555 38554 1781 2 LVPTGLDFGQEGFTR NEWVVDYALKKRNVRLVPTGLDFGQEGFTR LVPTGLDFGQEGFTRFRERRFHPSLRSTRR R L V T R F 0 1 0 1 0 1 1 3 0 0 2 0 0 2 1 0 2 0 0 1 0 0 15 0 1635.8257 P46087 P46087 539 553 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 1.8189E-10 120.57 2 2 1.1242 1.0923 15.481 4 Median 1.08 1.2656 7.9348 2 0 Median 1.1294 0.98068 2.3521 2 0 Median 828030000 389320000 438710000 632600000 300700000 331910000 195420000 88620000 106800000 9278 1570 9492 24600;24601;24602;24603 38556;38557;38558;38559;38560;38561;38562;38563;38564 38559 9 LVPVHYDETEAER KKSVKGVSKKYVPPRLVPVHYDETEAEREK PRLVPVHYDETEAEREKKRLERAKRRALSS R L V E R E 1 1 0 1 0 0 3 0 1 0 1 0 0 0 1 0 1 0 1 2 0 0 13 0 1556.7471 Q8NEJ9;H0YJ17 Q8NEJ9 176 188 NGDN Neuroguidin yes no 3 0.001346 48.527 2 1 0.83519 0.89589 8.7666 3 Plateau 0.82439 0.89589 9.5335 2 0 Median 0.94981 0.81301 NaN 1 0 Median 81432000 42247000 39185000 76940000 40042000 36898000 4492100 2204800 2287300 9279 1927 9493 24604;24605;24606 38565;38566;38567;38568 38567 4 LVQAFQFTDK VNDLPVGRSVDETLRLVQAFQFTDKHGEVC DETLRLVQAFQFTDKHGEVCPAGWKPGSDT R L V D K H 1 0 0 1 0 2 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 10 0 1195.6237 Q06830;A0A0A0MSI0;B2R4P2;A0A0A0MRQ5 Q06830 159 168 PRDX1 Peroxiredoxin-1 yes no 2 0.00022929 93.111 2 2 2.7394 2.6521 28.677 4 Median 2.8957 3.3374 1.1641 2 0 Median 2.5588 2.0383 5.8843 2 0 Median 442260000 106140000 336110000 415320000 98886000 316430000 26939000 7258600 19681000 9280 1690 9494 24607;24608;24609;24610 38569;38570;38571;38572;38573;38574;38575;38576 38570 8 LVQAPLDADGDNVLQEK LNRESSRSHSVFNIKLVQAPLDADGDNVLQ QAPLDADGDNVLQEKEQITISQLSLVDLAG K L V E K E 2 0 1 3 0 2 1 1 0 0 3 1 0 0 1 0 0 0 0 2 0 0 17 0 1823.9265 H7BYN4;Q02241;H0YKQ5 H7BYN4 309 325 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 4.3499E-05 89.629 3 2 1.1598 1.0631 14.862 4 Median 0.9332 0.97299 5.6133 2 0 Median 1.5171 1.2141 11.871 2 0 Median 83136000 39970000 43165000 61129000 32075000 29054000 22007000 7895800 14111000 9281 1312 9495 24611;24612;24613;24614;24615 38577;38578;38579;38580;38581;38582;38583;38584;38585;38586 38580 10 LVQDYGLESEVAQHLAATYGDK FLQGGKDWSPTLYIRLVQDYGLESEVAQHL ESEVAQHLAATYGDKAFEVAKMASVTGKRW R L V D K A 3 0 0 2 0 2 2 2 1 0 3 1 0 0 0 1 1 0 2 2 0 0 22 0 2406.1703 B7Z601;Q53T76;A8K1Z2;A0A140VJK2;P43304 B7Z601 256 277 GPD2 Glycerol-3-phosphate dehydrogenase;Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 3 8.4773E-05 36.454 1 1.1492 1.1674 NaN 1 Median 1.1492 1.1674 NaN 1 0 Median NaN NaN NaN 0 0 Median 12747000 5411700 7335200 12747000 5411700 7335200 0 0 0 9282 603 9496 24616 38587;38588;38589;38590;38591 38591 5 LVQEALEAVPR FTRAILMALRLNESKLVQEALEAVPRGEIE NESKLVQEALEAVPRGEIEVVTSSLPELYV K L V P R G 2 1 0 0 0 1 2 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 11 0 1223.6874 Q15269;A0A0B4J2E5 Q15269 774 784 PWP2 Periodic tryptophan protein 2 homolog yes no 2 1.2301E-12 145.17 2 2 1.1187 1.0966 3.6102 4 Median 0.94518 1.0862 0.054331 2 0 Median 1.3364 1.139 4.0653 2 0 Median 389490000 194250000 195240000 341040000 172320000 168720000 48455000 21933000 26522000 9283 1756 9497 24617;24618;24619;24620 38592;38593;38594;38595;38596;38597;38598;38599;38600;38601;38602 38592 11 LVQGSILK ______________________________ ______________________________ R L V L K K 0 0 0 0 0 1 0 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 856.5382 Q6FI35;Q6FHF5;P12004;B4DUA2;Q7Z6A3;Q7Z6A2;Q7Z6A1 Q6FI35 6 13 PCNA Proliferating cell nuclear antigen yes no 2 0.030669 51.787 1 0.72891 0.76676 NaN 1 Median 0.72891 0.76676 NaN 1 0 Median NaN NaN NaN 0 0 Median 30594000 17324000 13269000 30594000 17324000 13269000 0 0 0 9284 1473 9498 24621 38603 38603 1 LVQIEYALAAVAGGAPSVGIK ______________________________ ALAAVAGGAPSVGIKECLCTELEN______ K L V I K E 5 0 0 0 0 1 1 3 0 2 2 1 0 0 1 1 0 0 1 3 0 0 21 0 2026.1463 H7C402;H3BT36;Q53GF5;A0A024RA52;P25787 H7C402 7 27 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 2 0.0011695 54.501 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9285 296 9499 24622 38604 38604 1 LVQSPNSYFMDVK HPSLEEEKKKHKKKRLVQSPNSYFMDVKCP KRLVQSPNSYFMDVKCPGCYKITTVFSHAQ R L V V K C 0 0 1 1 0 1 0 0 0 0 1 1 1 1 1 2 0 0 1 2 0 0 13 0 1526.7439 H0YMV8;Q71UM5;C9JLI6;A4D1G5;P42677;Q5T4L4 P42677 40 52 RPS27L;LOC392748;RPS27 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2 6.4602E-14 132.25 3 5 1.1556 1.3371 22.86 6 Median 1.1458 1.3371 0.062645 2 0 Median 1.4918 1.2411 29.074 4 0 Median 732130000 313910000 418220000 574530000 250960000 323580000 157600000 62949000 94646000 9286 1298;1564 9500;9501 24623;24624;24625;24626;24627;24628;24629;24630 38605;38606;38607;38608;38609;38610;38611;38612;38613;38614;38615;38616;38617 38608 988 13 LVSDGNINSDR ANEEKINAVVETGRRLVSDGNINSDRIQEK TGRRLVSDGNINSDRIQEKVDSIDDRHRKN R L V D R I 0 1 2 2 0 0 0 1 0 1 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1188.5735 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1149 1159 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0022687 76.228 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9201300 0 9201300 9201300 0 9201300 0 0 0 9287 415 9502 24631 38618 38618 1 LVSDIIDPVALEIPLSK VNGIENKSLSPDEERLVSDIIDPVALEIPL SDIIDPVALEIPLSKNLLAQISALALQLDS R L V S K N 1 0 0 2 0 0 1 0 0 3 3 1 0 0 2 2 0 0 0 2 0 0 17 0 1821.0499 Q5UIP0;H7C2B5 Q5UIP0 2399 2415 RIF1 Telomere-associated protein RIF1 yes no 2 0.001924 37.426 2 1.358 1.3733 3.048 2 Median 1.358 1.3733 3.048 2 0 Median NaN NaN NaN 0 0 Median 13791000 5411300 8379600 13791000 5411300 8379600 0 0 0 9288 1829 9503 24632;24633 38619;38620 38619 1 LVSESSDVLPK SRAVVVKKIETRDGKLVSESSDVLPK____ RDGKLVSESSDVLPK_______________ K L V P K - 0 0 0 1 0 0 1 0 0 0 2 1 0 0 1 3 0 0 0 2 0 0 11 0 1172.6289 CON__P05787;P05787;Q969I0;Q7L4M3 CON__P05787 473 483 KRT8 Keratin, type II cytoskeletal 8 yes no 2 2.3195E-08 121.73 2 2 1.4485 1.4229 8.9871 4 Median 1.1054 1.3056 3.1602 2 0 Median 1.8701 1.5205 0.37325 2 0 Median 948840000 440940000 507900000 892820000 422180000 470630000 56024000 18754000 37270000 + 9289 1156 9504 24634;24635;24636;24637 38621;38622;38623;38624;38625;38626;38627;38628;38629;38630;38631;38632;38633;38634;38635 38625 15 LVSIGAEEIVDGNAK NVNKALDFIASKGVKLVSIGAEEIVDGNAK LVSIGAEEIVDGNAKMTLGMIWTIILRFAI K L V A K M 2 0 1 1 0 0 2 2 0 2 1 1 0 0 0 1 0 0 0 2 0 0 15 0 1513.7988 A0A0S2Z3G9;O43707;B4DSX0;B4E337 A0A0S2Z3G9 126 140 ACTN4 Alpha-actinin-4 yes no 2 0.00012494 89.403 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9290 548 9505 24638 38636 38636 1 LVSIVDSLHLEMEEALTEQVAR PERAVFRLRKWIIFRLVSIVDSLHLEMEEA LHLEMEEALTEQVARFCLFHSFFVTKKPTS R L V A R F 2 1 0 1 0 1 4 0 1 1 4 0 1 0 0 2 1 0 0 3 0 0 22 0 2481.2785 Q9BQG0;I3L1L3;B4DZZ1;I3L2H8 Q9BQG0 456 477 MYBBP1A Myb-binding protein 1A yes no 3 6.74E-19 104.06 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9134300 0 9134300 9134300 0 9134300 0 0 0 9291 1997 9506 24639 38637 38637 1836 1 LVSLGTCFGK SEKIMKLAANISGDKLVSLGTCFGKFTKTH ISGDKLVSLGTCFGKFTKTHKFRLHVTALD K L V G K F 0 0 0 0 1 0 0 2 0 0 2 1 0 1 0 1 1 0 0 1 0 0 10 0 1080.5638 Q9Y221;B3KM49;J3QLW7 Q9Y221 63 72 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2 2.4698E-05 99.802 2 2 1.1337 1.1786 12.671 3 Median 1.0882 1.2035 2.958 2 0 Median 1.2069 0.96925 NaN 1 0 Median 135540000 60278000 75258000 108490000 54562000 53929000 27045000 5715700 21329000 9292 2119 9507 24640;24641;24642;24643 38638;38639;38640;38641;38642;38643;38644 38640 7 LVSPGSANETSSILVESVTR HIVGSPFKAKVTGQRLVSPGSANETSSILV SANETSSILVESVTRSSTETCYSAIPKASS R L V T R S 1 1 1 0 0 0 2 1 0 1 2 0 0 0 1 5 2 0 0 3 0 0 20 0 2045.0641 O75369;A0A024R321;Q68CT4;E7EN95;A0A0A0MT44 O75369 2476 2495 FLNB;DKFZp686A1668 Filamin-B yes no 2 6.4057E-07 81.619 3 2 1.6429 1.5428 14.412 3 Median 1.6429 1.6118 NaN 1 0 Median 1.6305 1.3788 15.899 2 0 Median 26387000 6489700 19897000 20349000 4638800 15710000 6037800 1850800 4187000 9293 1402 9508 24644;24645;24646;24647;24648 38645;38646;38647;38648;38649;38650;38651;38652 38649 8 LVSQDNFGFDLPAVEAATK RKAAMRETWLSENQRLVSQDNFGFDLPAVE DNFGFDLPAVEAATKKHEAIETDIAAYEER R L V T K K 3 0 1 2 0 1 1 1 0 0 2 1 0 2 1 1 1 0 0 2 0 0 19 0 2021.0106 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;F8W6C1 D6W5C0 358 376 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.027705 33.616 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1130200 1130200 0 0 0 0 1130200 1130200 0 9294 415 9509 24649 38653 38653 1 LVTANTIDQK RCHRIGQTKPVVVYRLVTANTIDQKIVERA VVVYRLVTANTIDQKIVERAAAKRKLEKLI R L V Q K I 1 0 1 1 0 1 0 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 10 0 1101.603 A0A087WSW7;F6XU50;Q6I7N8;A0A0B4J1V9;Q9NRZ9;Q9NW36 A0A087WSW7 584 593 HELLS Lymphoid-specific helicase yes no 2 0.0048948 60.892 1 0.76451 0.78837 NaN 1 Median 0.76451 0.78837 NaN 1 0 Median NaN NaN NaN 0 0 Median 11523000 7204300 4319100 11523000 7204300 4319100 0 0 0 9295 400 9510 24650 38654;38655 38654 2 LVTCTGYHQVR PIWDQDIQFLPGSQKLVTCTGYHQVRVYDP GSQKLVTCTGYHQVRVYDPASPQRRPVLET K L V V R V 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 2 0 1 2 0 0 11 0 1332.6609 Q6RFH5;E9PS41 Q6RFH5 198 208 WDR74 WD repeat-containing protein 74 yes no 2;3 2.4358E-05 104.17 2 4 1.1706 1.1268 12.718 4 Median 0.94641 0.99522 18.058 2 0 Median 1.3127 1.1288 0.74507 2 0 Median 86388000 41501000 44888000 72957000 36431000 36526000 13431000 5069400 8361800 9296 1859 9511 24651;24652;24653;24654;24655;24656 38656;38657;38658;38659;38660;38661;38662;38663;38664 38656 9 LVTLPVSFAQLK GRLVNLQHLDLLNNKLVTLPVSFAQLKNLK NNKLVTLPVSFAQLKNLKWLDLKDNPLDPV K L V L K N 1 0 0 0 0 1 0 0 0 0 3 1 0 1 1 1 1 0 0 2 0 0 12 0 1314.7911 Q96AG4 Q96AG4 97 108 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 5.0707E-13 134.59 2 2 0.81078 0.7924 35.402 4 Median 0.93849 1.0679 0.31813 2 0 Median 0.68928 0.57872 2.5619 2 0 Median 414740000 221130000 193610000 308160000 157270000 150890000 106580000 63861000 42722000 9297 1958 9512 24657;24658;24659;24660 38665;38666;38667;38668;38669;38670;38671;38672 38668 8 LVTQDTENELK SQKHLQINQTFEELRLVTQDTENELKKLQQ EELRLVTQDTENELKKLQQTQEYFIIQYQE R L V L K K 0 0 1 1 0 1 2 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 11 0 1288.6511 Q8WW55;Q59H39;P51692;K7EIF9;K7EK35;Q59GY7;Q8WWS9;A8K6I5;P42229 Q8WW55 153 163 STAT5B;STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5B;Signal transducer and activator of transcription 5A yes no 2 0.00081495 70.552 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9298 1597 9513 24661 38673 38673 1 LVTTGVLK VGENADSQIKLSIKRLVTTGVLKQTKGVGA IKLSIKRLVTTGVLKQTKGVGASGSFRLAK R L V L K Q 0 0 0 0 0 0 0 1 0 0 2 1 0 0 0 0 2 0 0 2 0 0 8 0 829.5273 P07305 P07305 75 82 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.0078194 81.297 2 1.559 1.8113 0.61607 2 Median 1.559 1.8113 0.61607 2 0 Median NaN NaN NaN 0 0 Median 474480000 199400000 275080000 474480000 199400000 275080000 0 0 0 9299 1451 9514 24662;24663 38674;38675;38676 38674 3 LVTVVEEK GQPPGPKVLRKLPGRLVTVVEEKELVRRRR LRKLPGRLVTVVEEKELVRRRRQQRGAAST R L V E K E 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 1 0 0 3 0 0 8 0 915.5277 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4 A0A0A0MS59 2495 2502 SRCAP Helicase SRCAP yes no 2 0.01739 60.478 1 1.2773 1.363 NaN 1 Median 1.2773 1.363 NaN 1 0 Median NaN NaN NaN 0 0 Median 23158000 9735600 13422000 23158000 9735600 13422000 0 0 0 9300 476 9515 24664 38677;38678 38678 2 LVVALSR EAFRLAQQPHQNQAKLVVALSRTYRTMDDK QPHQNQAKLVVALSRTYRTMDDKTVFHEEF K L V S R T 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 7 0 756.48577 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 27 33 NCAPG Condensin complex subunit 3 yes no 2 0.010079 118.69 3 2 0.96286 0.98499 19.246 5 Median 0.83974 0.93822 9.5346 3 0 Median 1.5592 1.2657 2.5926 2 0 Median 143440000 74750000 68694000 118140000 65159000 52977000 25308000 9590900 15717000 9301 1995 9516 24665;24666;24667;24668;24669 38679;38680;38681;38682;38683;38684;38685;38686;38687;38688;38689 38685 11 LVVDSHVQYR GNAFHLCREVLRLTKLVVDSHVQYRLGNVD LRLTKLVVDSHVQYRLGNVDAFQLADGLQY K L V Y R L 0 1 0 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 3 0 0 10 0 1214.6408 Q6P2Q9;I3L0J9 Q6P2Q9 556 565 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 0.00018042 74.162 2 1 0.85656 0.98223 26.052 3 Median 0.91949 1.0326 7.079 2 0 Median 0.77172 0.66318 NaN 1 0 Median 137430000 78646000 58786000 136330000 78117000 58214000 1100900 529610 571340 9302 1854 9517 24670;24671;24672 38690;38691;38692;38693;38694 38692 5 LVVGNGPEGPGLSSTGK RADGKNMRESCCKRKLVVGNGPEGPGLSST VGNGPEGPGLSSTGKRRATGQDSCQERGLQ K L V G K R 0 0 1 0 0 0 1 5 0 0 2 1 0 0 2 2 1 0 0 2 0 0 17 0 1567.8206 A0PJ70;A8K9K0;Q8TF76 A0PJ70 275 291 GSG2 Serine/threonine-protein kinase haspin yes no 2 0.00026436 74.46 2 1 1.6618 1.4048 NaN 1 Median NaN NaN NaN 0 0 Median 1.6618 1.4048 NaN 1 0 Median 2079400 789070 1290300 0 0 0 2079400 789070 1290300 9303 646 9518 24673;24674;24675 38695;38696;38697 38695 3 LVVHCEQLDAQNQQR VGPPLLQLFLDLLRRLVVHCEQLDAQNQQR LVVHCEQLDAQNQQRCEAARAEADLFLDME R L V Q R C 1 1 1 1 1 4 1 0 1 0 2 0 0 0 0 0 0 0 0 2 0 0 15 0 1836.8901 O60287 O60287 964 978 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 0.036086 45.207 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9304 1392 9519 24676 38698 38698 1 LVVLAIANTMDLPER IMYNLFDWPTHKEARLVVLAIANTMDLPER LVVLAIANTMDLPERIMMNRVSSRLGLTRM R L V E R I 2 1 1 1 0 0 1 0 0 1 3 0 1 0 1 0 1 0 0 2 0 0 15 0 1653.9124 B7Z8H0;Q96F82;Q13415;A8K794 B7Z8H0 642 656 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 1.0866E-05 86.014 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8404400 0 8404400 8404400 0 8404400 0 0 0 9305 1103 9520 24677;24678 38699;38700 38699 846 2 LVVLGIRPIR KKAAKAGLSQSLFERLVVLGIRPIRLQVQY SLFERLVVLGIRPIRLQVQYRMHPALSAFP R L V I R L 0 2 0 0 0 0 0 1 0 2 2 0 0 0 1 0 0 0 0 2 0 0 10 1 1134.7601 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 688 697 UPF1 Regulator of nonsense transcripts 1 yes no 3 0.041835 40.724 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9306 231 9521 24679 38701 38701 1 LVVLGSGGVGK ______________________________ REYKLVVLGSGGVGKSALTVQFVQGIFVEK K L V G K S 0 0 0 0 0 0 0 4 0 0 2 1 0 0 0 1 0 0 0 3 0 0 11 0 984.59678 A0A024RB87;P61224;F5H6R7;F5H004;F5GX62;Q9BXV4;E7ESV4;F5H7Y6;Q5U0C3;A8KAH9;P62834;F5H4H0;F5GYH7;F5H077;F5GWU8;F5H491;F5H0B7;F5H500;A0A075B6Q0;F5GYB5;F8WBC0;B7ZAY2 A0A024RB87 6 16 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A yes no 2 0.00011853 96.331 2 1 1.8638 2.0883 49.265 3 Plateau 1.872 2.0554 2.2424 2 0 Median 1.0882 0.87602 NaN 1 0 Median 97907000 31918000 65989000 94895000 30305000 64590000 3011300 1612200 1399000 9307 329 9522 24680;24681;24682 38702;38703;38704;38705;38706 38704 5 LVVLVGPVGVGLNELK EEVTPYRRQTNEKYRLVVLVGPVGVGLNEL VVLVGPVGVGLNELKRKLLISDTQHYGVTV R L V L K R 0 0 1 0 0 0 1 3 0 0 4 1 0 0 1 0 0 0 0 5 0 0 16 0 1604.9865 U5GXS2;S4R337;B3KQ45;Q5T2T1 U5GXS2 131 146 MPP7 MAGUK p55 subfamily member 7 yes no 2 3.3263E-06 89.548 1 1.6921 1.7316 NaN 1 Median 1.6921 1.7316 NaN 1 0 Median NaN NaN NaN 0 0 Median 5036300 2023800 3012500 5036300 2023800 3012500 0 0 0 9308 926 9523 24683 38707 38707 1 LVVPASQCGSLIGK MTNSTAASRPPVTLRLVVPASQCGSLIGKG RLVVPASQCGSLIGKGGCKIKEIRESTGAQ R L V G K G 1 0 0 0 1 1 0 2 0 1 2 1 0 0 1 2 0 0 0 2 0 0 14 0 1427.7806 H3BRU6;F8VZX2;B4DRD7;F8W0G4;F8VXH9;F8W1G6;J3QT27;Q5MJP6;E9PFP8;P57721;H3BND9;Q15366;B4DLC0 Q15366 83 96 PCBP2;PCBP3 Poly(rC)-binding protein 3;Poly(rC)-binding protein 2 no no 2 0.0069087 41.283 1 2.2959 2.6553 NaN 1 Median 2.2959 2.6553 NaN 1 0 Median NaN NaN NaN 0 0 Median 201610000 59243000 142370000 201610000 59243000 142370000 0 0 0 9309 1263;1760 9524 24684 38708 38708 1 LVVPATQCGSLIGK MTNSTAASRPPVTLRLVVPATQCGSLIGKG RLVVPATQCGSLIGKGGCKIKEIRESTGAQ R L V G K G 1 0 0 0 1 1 0 2 0 1 2 1 0 0 1 1 1 0 0 2 0 0 14 0 1441.7963 Q53SS8;Q15365 Q53SS8 102 115 PCBP1 Poly(rC)-binding protein 1 yes no 2 3.0789E-05 96.015 1 1.8267 2.0792 NaN 1 Median 1.8267 2.0792 NaN 1 0 Median NaN NaN NaN 0 0 Median 147620000 53953000 93669000 147620000 53953000 93669000 0 0 0 9310 1759 9525 24685 38709;38710 38710 2 LVVVFGGTGAQGGSVAR ______________________________ VVFGGTGAQGGSVARTLLEDGTFKVRVVTR K L V A R T 2 1 0 0 0 1 0 5 0 0 1 0 0 1 0 1 1 0 0 4 0 0 17 0 1573.8576 Q9HBL8 Q9HBL8 6 22 NMRAL1 NmrA-like family domain-containing protein 1 yes yes 2 4.1047E-07 89.43 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16314000 0 16314000 16314000 0 16314000 0 0 0 9311 2049 9526 24686;24687 38711;38712 38711 2 LVWFDLDLSTK HPAGDNVICGSYDSKLVWFDLDLSTKPYRM YDSKLVWFDLDLSTKPYRMLRHHKKALRAV K L V T K P 0 0 0 2 0 0 0 0 0 0 3 1 0 1 0 1 1 1 0 1 0 0 11 0 1335.7075 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 644 654 BOP1 Ribosome biogenesis protein BOP1 yes no 2 2.2237E-05 104.05 2 0.72174 0.74666 NaN 1 Median 0.72174 0.74666 NaN 1 0 Median NaN NaN NaN 0 0 Median 24988000 16687000 8300400 24988000 16687000 8300400 0 0 0 9312 1726 9527 24688;24689 38713;38714;38715 38714 3 LVWVPSDK FINNPLAQADWAAKKLVWVPSDKSGFEPAS ADWAAKKLVWVPSDKSGFEPASLKEEVGEE K L V D K S 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 1 0 1 0 2 0 0 8 0 942.51747 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;Q5BKV1;B1AH99 A0A024R1N1 31 38 MYH9 Myosin-9 yes no 2 0.012282 67.981 2 1.4622 1.5047 5.7619 2 Median 1.4622 1.5047 5.7619 2 0 Median NaN NaN NaN 0 0 Median 61900000 25277000 36623000 61900000 25277000 36623000 0 0 0 9313 81 9528 24690;24691 38716;38717;38718 38718 3 LVYAPLSGVGGVLYDK LPEQQKKRCLNEKEKLVYAPLSGVGGVLYD VYAPLSGVGGVLYDKDAVYVDLGGSHVFQD K L V D K D 1 0 0 1 0 0 0 3 0 0 3 1 0 0 1 1 0 0 2 3 0 0 16 0 1649.9029 Q14692 Q14692 334 349 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 8.3651E-13 123.64 2 2 1.0997 1.0555 9.8063 4 Median 0.87712 0.98105 1.6611 2 0 Median 1.3967 1.1558 4.1383 2 0 Median 209380000 103720000 105660000 129070000 70152000 58922000 80302000 33569000 46733000 9314 1742 9529 24692;24693;24694;24695 38719;38720;38721;38722;38723;38724;38725;38726 38722 8 LWALPQCQLLGVFSGHR NDKLLATGSQDRTAKLWALPQCQLLGVFSG ALPQCQLLGVFSGHRRGLWCVQFSPMDQVL K L W H R R 1 1 0 0 1 2 0 2 1 0 4 0 0 1 1 1 0 1 0 1 0 0 17 0 1981.0356 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 505 521 TBL3 Transducin beta-like protein 3 no no 3 3.7422E-07 88.992 2 2 0.87616 0.78859 33.644 4 Median 0.56407 0.56881 12.018 2 0 Median 1.2298 1.006 0.24694 2 0 Median 58290000 30075000 28215000 29188000 16306000 12883000 29102000 13769000 15333000 9315 1698;436 9530 24696;24697;24698;24699 38727;38728;38729;38730;38731;38732;38733 38730 7 LWALQDFSCLK MDQVLATASADGTIKLWALQDFSCLKTFEG GTIKLWALQDFSCLKTFEGHDASVLKVAFV K L W L K T 1 0 0 1 1 1 0 0 0 0 3 1 0 1 0 1 0 1 0 0 0 0 11 0 1379.6908 Q12788;J3KNP2;A0JLS5 Q12788 547 557 TBL3 Transducin beta-like protein 3 yes no 2 4.5423E-08 118.18 2 2 0.88328 0.80384 24.358 4 Median 0.63671 0.63796 8.0938 2 0 Median 1.1919 0.96501 1.251 2 0 Median 67740000 36657000 31082000 47815000 27358000 20457000 19925000 9299900 10625000 9316 1698 9531 24700;24701;24702;24703 38734;38735;38736;38737;38738;38739 38736 6 LWAPDSPNR PPGAFVSVSRDRTTRLWAPDSPNRSFTEMH RDRTTRLWAPDSPNRSFTEMHCMSGHSNFV R L W N R S 1 1 1 1 0 0 0 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 9 0 1054.5196 Q9Y263;E5RIM3 Q9Y263 45 53 PLAA Phospholipase A-2-activating protein yes no 2 0.043828 48.561 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9317 2123 9532 24704 38740 38740 1 LWDHATMTEVK SEDKQILSADDKTVRLWDHATMTEVKSLNF KTVRLWDHATMTEVKSLNFNMSVSSMEYIP R L W V K S 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 1 0 1 0 0 11 0 1329.6387 Q9Y3F4;B0AZV0 Q9Y3F4 168 178 STRAP Serine-threonine kinase receptor-associated protein yes no 2 0.018361 42.19 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2683400 0 2683400 2683400 0 2683400 0 0 0 9318 2136 9533 24705 38741 38741 1970 1 LWDIPNSK DKYHVVSGADDYTVKLWDIPNSKEILTFKE ADDYTVKLWDIPNSKEILTFKEHSDYVRCG K L W S K E 0 0 1 1 0 0 0 0 0 1 1 1 0 0 1 1 0 1 0 0 0 0 8 0 971.50763 Q8TED0;H0Y8P4 Q8TED0 148 155 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.011448 69.905 2 2 1.1584 1.0247 8.4386 4 Median 1.0889 1.1127 3.1863 2 0 Median 1.2196 0.96476 0.074411 2 0 Median 69863000 35619000 34244000 60077000 31012000 29065000 9785400 4607200 5178200 9319 1936 9534 24706;24707;24708;24709 38742;38743;38744;38745;38746;38747 38742 6 LWDLTTGTTTR DGQFALSGSWDGTLRLWDLTTGTTTRRFVG GTLRLWDLTTGTTTRRFVGHTKDVLSVAFS R L W T R R 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 5 1 0 0 0 0 11 0 1263.6459 E9KL35;P63244;J3KPE3;H0Y8W2;H0YAF8;D6RHH4;D6R9Z1;D6R9L0;D6RFX4;B4DVD2;D6RFZ9;D6RAU2;E9PD14;B4E0C3 E9KL35 89 99 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 5.7534E-06 110.47 2 2 1.7956 1.6553 6.1546 3 Plateau 1.4611 1.6553 NaN 1 0 Median 1.8671 1.5383 6.3183 2 0 Median 126370000 50226000 76148000 106280000 43092000 63188000 20093000 7133200 12960000 9320 1227 9535 24710;24711;24712;24713 38748;38749;38750;38751 38748 4 LWDYIDGILIK NHLQLYSCSLDGTIKLWDYIDGILIKTFIV GTIKLWDYIDGILIKTFIVGCKLHALFTLA K L W I K T 0 0 0 2 0 0 0 1 0 3 2 1 0 0 0 0 0 1 1 0 0 0 11 0 1347.7438 A8K330;Q8IWA0 A8K330 84 94 WDR75 WD repeat-containing protein 75 yes no 2 0.00042966 79.148 2 0.79748 0.84924 4.3201 2 Median 0.79748 0.84924 4.3201 2 0 Median NaN NaN NaN 0 0 Median 37372000 21063000 16310000 37372000 21063000 16310000 0 0 0 9321 716 9536 24714;24715 38752;38753;38754;38755 38755 4 LWEVATAR GGQWLVSGSDDGSLRLWEVATARCVRTVPV SDDGSLRLWEVATARCVRTVPVGGVVKSVA R L W A R C 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 8 0 944.50797 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 439 446 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.0010264 114.6 2 1 0.66365 0.75295 15.78 3 Median 0.65831 0.74346 1.794 2 0 Median 1.172 0.97627 NaN 1 0 Median 121290000 71686000 49601000 114320000 68359000 45963000 6964200 3326900 3637300 9322 1726 9537 24716;24717;24718 38756;38757;38758;38759;38760 38757 5 LWNLNNYR KQNPFWWTHQRHDGKLWNLNNYRTDMIQAL HQRHDGKLWNLNNYRTDMIQALGGVEGILE K L W Y R T 0 1 3 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 8 0 1091.5512 Q6P2Q9;B4DK16;I3L3Z8 Q6P2Q9 1464 1471 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0035023 95.62 2 0.80166 0.84147 NaN 1 Median 0.80166 0.84147 NaN 1 0 Median NaN NaN NaN 0 0 Median 25033000 18451000 6581800 25033000 18451000 6581800 0 0 0 9323 1854 9538 24719;24720 38761;38762 38762 2 LWNTLGVCK DNRQIVSGSRDKTIKLWNTLGVCKYTVQDE RDKTIKLWNTLGVCKYTVQDESHSEWVSCV K L W C K Y 0 0 1 0 1 0 0 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 9 0 1089.5641 E9KL35;P63244;J3KPE3;H0Y8W2;H0YAF8;D6RHH4;D6R9Z1;H0YAM7;D6R9L0;D6RFX4;B4DVD2;D6RBD0;D6RFZ9;D6RAU2;E9PD14;B4E0C3 E9KL35 131 139 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.0026291 83.265 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3591800 3591800 0 3591800 3591800 0 0 0 0 9324 1227 9539 24721;24722;24723;24724 38763;38764;38765;38766 38766 4 LWQCGEGFR NTDLVATGSHSSCVRLWQCGEGFRQLDLLC HSSCVRLWQCGEGFRQLDLLCDIPLVGFIN R L W F R Q 0 1 0 0 1 1 1 2 0 0 1 0 0 1 0 0 0 1 0 0 0 0 9 0 1151.5182 O43818 O43818 402 410 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.0028606 73.26 2 2 0.52351 0.55745 3.121 2 Median 0.52351 0.55745 3.121 2 0 Median NaN NaN NaN 0 0 Median 73420000 44958000 28462000 69974000 44958000 25016000 3446300 0 3446300 9325 1389 9540 24725;24726;24727;24728 38767;38768;38769;38770;38771 38768 5 LWSLDSDEPVADIEGHTVR KDVNLASCAADGSVKLWSLDSDEPVADIEG DSDEPVADIEGHTVRVARVMWHPSGRFLGT K L W V R V 1 1 0 3 0 0 2 1 1 1 2 0 0 0 1 2 1 1 0 2 0 0 19 0 2138.028 Q6IAP9;Q5T1M7;Q59EL4;O43172 Q6IAP9 306 324 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 3 0.013057 27.924 1 1 0.98094 0.90705 34.449 2 Median 1.1531 1.1572 NaN 1 0 Median 0.83449 0.71095 NaN 1 0 Median 10732000 5791300 4940900 7910800 4115400 3795400 2821300 1675900 1145400 9326 1381 9541 24729;24730 38772;38773 38772 1 LWTLVSEQTR LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK VNLDKLWTLVSEQTRVNAAKNKTGAAPIID K L W T R V 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 2 1 0 1 0 0 10 0 1231.6561 Q9BQQ5;E9PLL6;Q6NZ52;P46776;E9PJD9 Q9BQQ5 78 87 L27a;RPL27A 60S ribosomal protein L27a yes no 2 2.4126E-09 127.68 2 2 0.70314 0.70302 2.5525 4 Median 0.61101 0.72167 2.7662 2 0 Median 0.80126 0.69726 0.22764 2 0 Median 1988100000 1193500000 794560000 1650100000 1007700000 642410000 338020000 185870000 152150000 9327 1247 9542 24731;24732;24733;24734 38774;38775;38776;38777;38778;38779;38780;38781;38782;38783;38784;38785;38786;38787;38788 38779 15 LWVLETK SPDGKMLLSAGRTIKLWVLETKEVYRHFTG LSAGRTIKLWVLETKEVYRHFTGHATPVSS K L W T K E 0 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 7 0 887.51165 Q15061;C9IZK7;C9JEE7 Q15061 192 198 WDR43 WD repeat-containing protein 43 yes no 2 0.037624 60.76 1 2 1.1128 0.89284 0.32605 2 Median NaN NaN NaN 0 0 Median 1.1128 0.89284 0.32605 2 0 Median 41844000 7984000 33860000 23994000 0 23994000 17850000 7984000 9865900 9328 1752 9543 24735;24736;24737 38789;38790;38791 38791 3 LYALDVLLTR IRIPGKESLITDSGKLYALDVLLTRLKSQG TDSGKLYALDVLLTRLKSQGHRVLIYSQMT K L Y T R L 1 1 0 1 0 0 0 0 0 0 4 0 0 0 0 0 1 0 1 1 0 0 10 0 1175.6914 A0A024R9R7;Q9ULG1;A8K2V6 A0A024R9R7 1103 1112 INOC1;INO80 DNA helicase INO80 yes no 2 0.00086964 79.906 2 1 0.71872 0.72214 43.297 3 Median 0.61878 0.63128 19.016 2 0 Median 1.4678 1.2877 NaN 1 0 Median 14226000 8131400 6094100 12529000 7365600 5163500 1696500 765850 930640 9329 288 9544 24738;24739;24740 38792;38793;38794 38792 3 LYALGLVPTR RDQFRVRASAALLDKLYALGLVPTRGSLEL ALLDKLYALGLVPTRGSLELCDFVTASSFC K L Y T R G 1 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 1 0 1 1 0 0 10 0 1101.6546 Q9NV31 Q9NV31 83 92 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.00041053 87.308 2 2 0.87356 0.82576 8.3811 4 Median 0.74007 0.80946 14.127 2 0 Median 1.0102 0.82576 2.6776 2 0 Median 127690000 73611000 54082000 105880000 62037000 43845000 21811000 11574000 10237000 9330 2073 9545 24741;24742;24743;24744 38795;38796;38797;38798;38799;38800;38801;38802 38799 8 LYCQELK KTENKAKSGKQNSKKLYCQELKKVIEASDV SGKQNSKKLYCQELKKVIEASDVVLEVLDA K L Y L K K 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 952.4688 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5 A0A024R2Z6 117 123 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.027069 86.866 1 1 0.9135 0.85695 16.979 2 Median 0.67732 0.76001 NaN 1 0 Median 1.232 0.96627 NaN 1 0 Median 80944000 46223000 34721000 77144000 44561000 32583000 3800100 1662400 2137700 9331 125 9546 24745;24746 38803;38804 38803 2 LYDIDVAK DVKANKHQIKQAVKKLYDIDVAKVNTLIRP IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV K L Y A K V 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 8 0 935.4964 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 118 125 RPL23A 60S ribosomal protein L23a yes no 2 0.0080668 80.229 3 2 0.75614 0.73334 7.1666 5 Median 0.66561 0.80359 5.5735 3 0 Median 0.80537 0.70096 0.10508 2 0 Median 4050500000 2446700000 1603800000 3625600000 2212700000 1412800000 424910000 233990000 190910000 9332 796 9547 24747;24748;24749;24750;24751 38805;38806;38807;38808;38809;38810;38811;38812;38813;38814;38815;38816;38817;38818;38819;38820;38821 38807 17 LYDILGVPPGASENELK ______________________________ DILGVPPGASENELKKAYRKLAKEYHPDKN K L Y L K K 1 0 1 1 0 0 2 2 0 1 3 1 0 0 2 1 0 0 1 1 0 0 17 0 1813.9462 A0A024R6S1;O60884;T2DN57;T2DPK5;I3L320 A0A024R6S1 9 25 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 0.0065792 33.968 1 1.1064 0.8768 NaN 1 Median NaN NaN NaN 0 0 Median 1.1064 0.8768 NaN 1 0 Median 4213400 2061400 2152100 0 0 0 4213400 2061400 2152100 9333 208 9548 24752 38822 38822 1 LYDNLLEQNLIR AELRDDPIISTHLAKLYDNLLEQNLIRVIE LAKLYDNLLEQNLIRVIEPFSRVQIEHISS K L Y I R V 0 1 2 1 0 1 1 0 0 1 4 0 0 0 0 0 0 0 1 0 0 0 12 0 1502.8093 O00231 O00231 326 337 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 0.0020071 68.847 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9334 1360 9549 24753;24754 38823;38824 38824 2 LYDVPANSMR TSQFLLVSSWDTSVRLYDVPANSMRLKYQH DTSVRLYDVPANSMRLKYQHTGAVLDCAFY R L Y M R L 1 1 1 1 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 10 0 1164.5597 J3QT28;A0A140VJF3;O43684;J3QSX4 J3QT28 41 50 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.010492 46.158 1 1.6259 1.6441 NaN 1 Median 1.6259 1.6441 NaN 1 0 Median NaN NaN NaN 0 0 Median 15343000 4735300 10608000 15343000 4735300 10608000 0 0 0 9335 600 9550 24755 38825 38825 458 1 LYDVVAVFPK PSHCNVLRATSSRARLYDVVAVFPKTEKLF SSRARLYDVVAVFPKTEKLFHIACTHLDVD R L Y P K T 1 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 1 3 0 0 10 0 1149.6434 Q5VU10;P78346;B4DJR3;Q5VU11 Q5VU10 53 62 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.00076782 81.548 2 2 1.4194 1.3619 38.332 4 Median 1.8046 1.8311 7.1111 2 0 Median 1.0918 0.9616 14.466 2 0 Median 21577000 8885400 12692000 19411000 7754100 11657000 2166000 1131300 1034700 9336 1663 9551 24756;24757;24758;24759 38826;38827;38828;38829;38830 38826 5 LYELDGLR EDAFHFVSYVPVNGRLYELDGLREGPIDLG YVPVNGRLYELDGLREGPIDLGACNQDDWI R L Y L R E 0 1 0 1 0 0 1 1 0 0 3 0 0 0 0 0 0 0 1 0 0 0 8 0 977.5182 Q5LJA5;Q5LJA9;Q9Y5K5;Q5LJB0;B2RB07;H0Y4E0;B4DW59;B7Z9U9;H0Y6Y4 Q5LJA5 175 182 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 2 0.033338 55.676 1 2.7348 2.8554 NaN 1 Median 2.7348 2.8554 NaN 1 0 Median NaN NaN NaN 0 0 Median 4893800 1510300 3383500 4893800 1510300 3383500 0 0 0 9337 1811 9552 24760 38831 38831 1 LYEPDQLQELK RQELDAFLAQALSPKLYEPDQLQELKIENL LSPKLYEPDQLQELKIENLDPRGIQLSALF K L Y L K I 0 0 0 1 0 2 2 0 0 0 3 1 0 0 1 0 0 0 1 0 0 0 11 0 1374.7031 Q9NZB2;A0A0C4DG79 Q9NZB2 748 758 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 2 0.0065898 63.184 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9338 2086 9553 24761 38832 38832 1 LYESLLVGSLPDMNK LWDTANTVKEKFGRKLYESLLVGSLPDMNK LYESLLVGSLPDMNKMLDKEDFTMMKRAIF K L Y N K M 0 0 1 1 0 0 1 1 0 0 4 1 1 0 1 2 0 0 1 1 0 0 15 0 1677.8648 P13807;A8K6K7;B7Z806;B7Z6I6 P13807 404 418 GYS1 Glycogen [starch] synthase, muscle yes no 2 2.4455E-15 126.19 2 2 0.44517 0.41055 59.831 4 Median 0.68194 0.70701 12.924 2 0 Median 0.31219 0.2531 4.4611 2 0 Median 48725000 30232000 18494000 31377000 17200000 14177000 17348000 13032000 4316500 9339 1479 9554 24762;24763;24764;24765 38833;38834;38835;38836 38833 1235 4 LYEWTTEK EFNGKLLASINSTVRLYEWTTEKELRTECN SINSTVRLYEWTTEKELRTECNHYNNIMAL R L Y E K E 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 2 1 1 0 0 0 8 0 1068.5128 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 890 897 DDB1 DNA damage-binding protein 1 yes no 2 0.0018982 104.75 2 2 0.88278 0.84261 19.494 4 Median 0.64846 0.71868 1.7725 2 0 Median 1.2432 1.0043 4.104 2 0 Median 122010000 72604000 49404000 107450000 65598000 41847000 14562000 7005300 7557100 9340 1770 9555 24766;24767;24768;24769 38837;38838;38839;38840 38838 4 LYFDNLLSQR KTYQQFRRCLTLRCKLYFDNLLSQRAYCGK TLRCKLYFDNLLSQRAYCGKMNFDHKNETL K L Y Q R A 0 1 1 1 0 1 0 0 0 0 3 0 0 1 0 1 0 0 1 0 0 0 10 0 1267.6561 Q96SB8 Q96SB8 943 952 SMC6 Structural maintenance of chromosomes protein 6 yes yes 2 0.041181 38.303 1 1.2028 1.0464 NaN 1 Median NaN NaN NaN 0 0 Median 1.2028 1.0464 NaN 1 0 Median 1541000 782740 758260 0 0 0 1541000 782740 758260 9341 1989 9556 24770 38841 38841 1 LYGDADYLEER KRRTLFQTKNSVMRKLYGDADYLEERHRHR VMRKLYGDADYLEERHRHRFEVNPVWKKCL K L Y E R H 1 1 0 2 0 0 2 1 0 0 2 0 0 0 0 0 0 0 2 0 0 0 11 0 1342.6041 P17812;B4E1E0;B4DMB5 P17812 467 477 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.00046689 76.228 2 1.8965 1.989 5.468 2 Median 1.8965 1.989 5.468 2 0 Median NaN NaN NaN 0 0 Median 57858000 18426000 39432000 57858000 18426000 39432000 0 0 0 9342 1494 9557 24771;24772 38842;38843;38844 38842 3 LYGEFADPFK DAVSQLDSELMDITKLYGEFADPFKLAECK MDITKLYGEFADPFKLAECKLAIIHCAGYS K L Y F K L 1 0 0 1 0 0 1 1 0 0 1 1 0 2 1 0 0 0 1 0 0 0 10 0 1185.5706 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1150 1159 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.049193 36.334 1 1.3804 1.2109 NaN 1 Median NaN NaN NaN 0 0 Median 1.3804 1.2109 NaN 1 0 Median 1286500 562200 724280 0 0 0 1286500 562200 724280 9343 39 9558 24773 38845 38845 1 LYGLLDPSVFHVK LIHKHNLEYPDFYRKLYGLLDPSVFHVKYR RKLYGLLDPSVFHVKYRARFFHLADLFLSS K L Y V K Y 0 0 0 1 0 0 0 1 1 0 3 1 0 1 1 1 0 0 1 2 0 0 13 0 1486.8184 Q9BVI4 Q9BVI4 330 342 NOC4L Nucleolar complex protein 4 homolog yes yes 3 9.675E-05 64.945 2 2 0.98022 0.88099 7.5812 4 Median 0.91319 0.93638 4.8459 2 0 Median 1.0541 0.83423 3.9372 2 0 Median 70187000 34424000 35763000 43385000 22061000 21324000 26802000 12363000 14438000 9344 2007 9559 24774;24775;24776;24777 38846;38847;38848;38849;38850;38851;38852;38853 38846 8 LYGLQEALEIAR GCILWANGIYLVCGRLYGLQEALEIAREMK CGRLYGLQEALEIAREMKCSHCQEAGATLG R L Y A R E 2 1 0 0 0 1 2 1 0 1 3 0 0 0 0 0 0 0 1 0 0 0 12 0 1374.7507 W5ZR30;Q9UGU0;A9JX13 W5ZR30 1872 1883 TCF20 Transcription factor 20 yes no 2 7.6188E-07 112.36 2 2 1.1294 1.0631 56.423 4 Median 0.66019 0.66864 8.9392 2 0 Median 2.0826 1.7516 13.995 2 0 Median 36409000 18822000 17587000 24902000 14273000 10628000 11507000 4548700 6958500 9345 2100 9560 24778;24779;24780;24781 38854;38855;38856;38857;38858;38859;38860;38861;38862 38857 9 LYGPTNFAPIINHVAR QGIVDAYRQALPQVRLYGPTNFAPIINHVA YGPTNFAPIINHVARFAAQAAHQGTASQYF R L Y A R F 2 1 2 0 0 0 0 1 1 2 1 0 0 1 2 0 1 0 1 1 0 0 16 0 1781.9577 H0Y524;Q5JX45;E7ENH5;A6PVH9;Q59EI4;F2Z2V0;B0QZ18;Q99829 H0Y524 24 39 CPNE1 Copine-1 yes no 3 0.0033081 47.037 2 1.0535 1.0464 NaN 1 Median 1.0535 1.0464 NaN 1 0 Median NaN NaN NaN 0 0 Median 13123000 4400100 8723400 13123000 4400100 8723400 0 0 0 9346 691 9561 24782;24783 38863;38864 38863 2 LYGPTNFSPIINHVAR QGIVEAYRSCLPQIKLYGPTNFSPIINHVA YGPTNFSPIINHVARFAAAATQQQTASQYF K L Y A R F 1 1 2 0 0 0 0 1 1 2 1 0 0 1 2 1 1 0 1 1 0 0 16 0 1797.9526 A0A024R994;O75131 A0A024R994 391 406 CPNE3 Copine-3 yes no 3 6.9533E-05 57.288 2 1 1.1629 1.0975 70.841 2 Median 1.7974 1.8112 NaN 1 0 Median 0.75242 0.66508 NaN 1 0 Median 36019000 9506500 26512000 32240000 7519800 24720000 3779200 1986600 1792600 9347 271 9562 24784;24785;24786 38865;38866;38867 38866 2 LYGSAGPPPTGEEDTAEK KKKELEEIVQPIISKLYGSAGPPPTGEEDT SAGPPPTGEEDTAEKDEL____________ K L Y E K D 2 0 0 1 0 0 3 3 0 0 1 1 0 0 3 1 2 0 1 0 0 0 18 0 1817.8319 V9HWB4;P11021 V9HWB4 634 651 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 4.6497E-05 59.116 2 0.66687 0.68924 0.95082 2 Median 0.66687 0.68924 0.95082 2 0 Median NaN NaN NaN 0 0 Median 21548000 11494000 10055000 21548000 11494000 10055000 0 0 0 9348 1466 9563 24787;24788 38868;38869;38870;38871;38872;38873 38871 6 LYGSAGPPPTGEEDTAEKDEL KKKELEEIVQPIISKLYGSAGPPPTGEEDT PPPTGEEDTAEKDEL_______________ K L Y E L - 2 0 0 2 0 0 4 3 0 0 2 1 0 0 3 1 2 0 1 0 0 0 21 1 2174.9855 V9HWB4;P11021 V9HWB4 634 654 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 7.3775E-05 48.112 2 0.76251 0.77467 2.366 2 Median 0.76251 0.77467 2.366 2 0 Median NaN NaN NaN 0 0 Median 26156000 14854000 11302000 26156000 14854000 11302000 0 0 0 9349 1466 9564 24789;24790 38874;38875;38876;38877 38877 4 LYHLLR PARPFLLVASQRSVRLYHLLRQELTKKLMP LVASQRSVRLYHLLRQELTKKLMPNCKWVS R L Y L R Q 0 1 0 0 0 0 0 0 1 0 3 0 0 0 0 0 0 0 1 0 0 0 6 0 813.48611 Q14137;B2RDN4;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 604 609 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.062353 67.377 1 1.2324 1.0081 NaN 1 Median NaN NaN NaN 0 0 Median 1.2324 1.0081 NaN 1 0 Median 13226000 5448400 7777700 0 0 0 13226000 5448400 7777700 9350 1726 9565 24791 38878 38878 1 LYIAYQFLLAEDTK LEYQKVMREIEHLSRLYIAYQFLLAEDTKV RLYIAYQFLLAEDTKVRSAEELKEMQDKVI R L Y T K V 2 0 0 1 0 1 1 0 0 1 3 1 0 1 0 0 1 0 2 0 0 0 14 0 1686.8869 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q7Z2X1;Q05D74;Q5T821 A0A024R158 233 246 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.6289E-10 108.37 3 3 2.0872 1.705 20.404 2 Median NaN NaN NaN 0 0 Median 2.0872 1.705 20.404 2 0 Median 64364000 23590000 40773000 3269500 0 3269500 61094000 23590000 37504000 9351 69 9566 24792;24793;24794;24795;24796;24797 38879;38880;38881;38882;38883;38884;38885 38880 7 LYIGNLNESVTPADLEK ______________________________ IGNLNESVTPADLEKVFAEHKISYSGQFLV K L Y E K V 1 0 2 1 0 0 2 1 0 1 3 1 0 0 1 1 1 0 1 1 0 0 17 0 1874.9626 Q9NZI8 Q9NZI8 4 20 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 2.5471E-09 101.32 2 2 2.2847 2.0431 31.166 2 Median 2.5989 2.5468 NaN 1 0 Median 2.0084 1.639 NaN 1 0 Median 58311000 8671000 49640000 47410000 6288200 41122000 10901000 2382800 8517700 9352 2087 9567 24798;24799;24800;24801 38886;38887;38888;38889;38890;38891;38892 38887 7 LYIGNLSENAAPSDLESIFK ______________________________ LSENAAPSDLESIFKDAKIPVSGPFLVKTG K L Y F K D 2 0 2 1 0 0 2 1 0 2 3 1 0 1 1 3 0 0 1 0 0 0 20 0 2180.1001 O00425;F8WD15 O00425 4 23 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 2 1.7602E-10 89.231 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26319000 0 26319000 26319000 0 26319000 0 0 0 9353 1364 9568 24802;24803 38893;38894 38894 2 LYLEQLR ELEETAQEKKLRLAKLYLEQLRQQEEEKAE EKKLRLAKLYLEQLRQQEEEKAEARAFEED K L Y L R Q 0 1 0 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 7 0 933.52837 O43818 O43818 85 91 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.037563 60.788 1 0.76966 0.87717 NaN 1 Median 0.76966 0.87717 NaN 1 0 Median NaN NaN NaN 0 0 Median 135530000 75485000 60046000 135530000 75485000 60046000 0 0 0 9354 1389 9569 24804 38895 38895 1 LYLIDLAGSEDNRR DQRERLAPFRQREGKLYLIDLAGSEDNRRT KLYLIDLAGSEDNRRTGNKGLRLKESGAIN K L Y R R T 1 2 1 2 0 0 1 1 0 1 3 0 0 0 0 1 0 0 1 0 0 0 14 1 1633.8424 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 270 283 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 0.0019182 40.025 2 2 1.3796 1.2267 20.335 3 Median 0.76195 0.87347 NaN 1 0 Median 1.411 1.2415 1.7019 2 0 Median 65972000 35486000 30485000 50795000 30122000 20673000 15176000 5364000 9812300 9355 1745 9570 24805;24806;24807;24808 38896;38897;38898;38899;38900 38896 5 LYLINSPVVR DPVSIIQKYGADALRLYLINSPVVRAENLR ADALRLYLINSPVVRAENLRFKEEGVRDVL R L Y V R A 0 1 1 0 0 0 0 0 0 1 2 0 0 0 1 1 0 0 1 2 0 0 10 0 1172.6917 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4 Q59G75 642 651 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 1.3617E-05 102.51 2 2 1.7545 1.9025 53.786 3 Plateau 1.7547 1.9124 NaN 1 0 Median 0.87545 0.75411 3.6045 2 0 Median 57210000 12800000 44410000 48832000 9048100 39784000 8377800 3752200 4625600 9356 1561 9571 24809;24810;24811;24812 38901;38902;38903;38904;38905 38902 5 LYLVFSK ECLQLADMVSSERHKLYLVFSKEELRKLLQ MVSSERHKLYLVFSKEELRKLLQKLRESSL K L Y S K E 0 0 0 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 1 1 0 0 7 0 868.50584 P57740;B3KMK0 P57740 888 894 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.030981 84.244 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24087000 0 24087000 24087000 0 24087000 0 0 0 9357 1621 9572 24813;24814 38906;38907 38907 2 LYNLFLK FVGPLKSQAADQITKLYNLFLKIDATQVEV QAADQITKLYNLFLKIDATQVEVNPFGETP K L Y L K I 0 0 1 0 0 0 0 0 0 0 3 1 0 1 0 0 0 0 1 0 0 0 7 0 909.53239 A0A024R325;Q96I99;Q3ZCW5;E9PDQ8;B7Z2D5 A0A024R325 228 234 SUCLG2 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.03113 69.432 2 2.8487 2.8939 NaN 1 Median 2.8487 2.8939 NaN 1 0 Median NaN NaN NaN 0 0 Median 10354000 1763300 8590900 10354000 1763300 8590900 0 0 0 9358 126 9573 24815;24816 38908;38909 38909 2 LYNNHEIR FVTFCTKEAAQEAVKLYNNHEIRSGKHIGV AAQEAVKLYNNHEIRSGKHIGVCISVANNR K L Y I R S 0 1 2 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1057.5305 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645 Q05CK9 258 265 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 3 0.0020238 84.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11139000 0 11139000 11139000 0 11139000 0 0 0 9359 864 9574 24817 38910 38910 1 LYNVVVDTEVTGK DTSATTALELVAGERLYNVVVDTEVTGKKL ERLYNVVVDTEVTGKKLLERGELKRRYTII R L Y G K K 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 0 2 0 1 4 0 0 13 0 1435.7559 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 549 561 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.8934E-23 152.7 2 2 1.2346 1.2338 23.145 4 Median 0.85864 1.0116 0.26948 2 0 Median 1.7701 1.5103 0.7704 2 0 Median 883930000 434250000 449680000 735200000 379790000 355410000 148730000 54453000 94274000 9360 69 9575 24818;24819;24820;24821 38911;38912;38913;38914;38915;38916;38917;38918 38911 8 LYNVVVDTEVTGKK DTSATTALELVAGERLYNVVVDTEVTGKKL RLYNVVVDTEVTGKKLLERGELKRRYTIIP R L Y K K L 0 0 1 1 0 0 1 1 0 0 1 2 0 0 0 0 2 0 1 4 0 0 14 1 1563.8508 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 549 562 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.002713 52.391 2 1.9945 1.7115 5.4004 2 Median NaN NaN NaN 0 0 Median 1.9945 1.7115 5.4004 2 0 Median 10018000 3375600 6642600 0 0 0 10018000 3375600 6642600 9361 69 9576 24822;24823 38919;38920;38921;38922;38923 38920 5 LYNYFYDR EIEIQAHLHHPNILRLYNYFYDRRRIYLIL HHPNILRLYNYFYDRRRIYLILEYAPRGEL R L Y D R R 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 3 0 0 0 8 0 1152.524 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 Q96GD4 140 147 AURKB Aurora kinase B no no 2 0.0015831 107.66 2 2 1.4325 1.3721 18.649 4 Median 1.0331 1.1658 0.51073 2 0 Median 1.9551 1.6102 0.10366 2 0 Median 156210000 70846000 85366000 124450000 61417000 63032000 31763000 9429500 22334000 9362 881;1967 9577 24824;24825;24826;24827 38924;38925;38926;38927;38928;38929;38930;38931;38932;38933;38934;38935;38936;38937 38929 14 LYPVLQQSLVR SWAEAVRLGLEGCQRLYPVLQQSLVRAARR GCQRLYPVLQQSLVRAARRRGAAAQP____ R L Y V R A 0 1 0 0 0 2 0 0 0 0 3 0 0 0 1 1 0 0 1 2 0 0 11 0 1314.766 Q5RKV6 Q5RKV6 251 261 EXOSC6 Exosome complex component MTR3 yes yes 2 0.014921 54.608 1 1 0.89391 0.81594 1.8127 2 Median 0.82488 0.82646 NaN 1 0 Median 0.96871 0.80555 NaN 1 0 Median 24491000 12683000 11808000 18431000 9642700 8788700 6059800 3040100 3019800 9363 1814 9578 24828;24829 38938;38939 38939 2 LYQEVEIASVDAFQGR YLVQYMQFSGSLHTKLYQEVEIASVDAFQG YQEVEIASVDAFQGREKDFIILSCVRANEH K L Y G R E 2 1 0 1 0 2 2 1 0 1 1 0 0 1 0 1 0 0 1 2 0 0 16 0 1823.9054 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 817 832 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.012186 32.567 1 0.68696 0.59394 NaN 1 Median NaN NaN NaN 0 0 Median 0.68696 0.59394 NaN 1 0 Median 1756600 922230 834370 0 0 0 1756600 922230 834370 9364 231 9579 24830 38940 38940 1 LYQGINQLPNVIQALEK KKFQRQAANLQDCYRLYQGINQLPNVIQAL QGINQLPNVIQALEKHEGKHQKLLLAVFVT R L Y E K H 1 0 2 0 0 3 1 1 0 2 3 1 0 0 1 0 0 0 1 1 0 0 17 0 1940.0731 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;V9H068;V9H0D5;V9H023;B4DL39;B4DSB9;B4DN49 V9H019 407 423 MSH2 DNA mismatch repair protein Msh2 yes no 2 7.0084E-05 70.089 2 0.95262 0.97378 0.18681 2 Median 0.95262 0.97378 0.18681 2 0 Median NaN NaN NaN 0 0 Median 30951000 16149000 14802000 30951000 16149000 14802000 0 0 0 9365 1237 9580 24831;24832 38941;38942;38943;38944 38942 4 LYQHEINLFK QPQDVVSKYKTLAQKLYQHEINLFKSKTNS TLAQKLYQHEINLFKSKTNSQKGASSTWMK K L Y F K S 0 0 1 0 0 1 1 0 1 1 2 1 0 1 0 0 0 0 1 0 0 0 10 0 1303.6925 B2R5U7;Q03701 B2R5U7 212 221 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.0099412 33.89 1 1.0087 0.99616 NaN 1 Median 1.0087 0.99616 NaN 1 0 Median NaN NaN NaN 0 0 Median 25366000 12574000 12792000 25366000 12574000 12792000 0 0 0 9366 836;1683 9581 24833 38945 38945 1 LYQTPLELK EKLSLRQRKPDEDMKLYQTPLELKLKHSTV PDEDMKLYQTPLELKLKHSTVHVDELCPLI K L Y L K L 0 0 0 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 1 0 0 0 9 0 1103.6227 P52948;H7C3P6;A0A024RCC4 P52948 1214 1222 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0050184 75.213 2 1.4651 1.4457 NaN 1 Median 1.4651 1.4457 NaN 1 0 Median NaN NaN NaN 0 0 Median 16692000 3561100 13131000 16692000 3561100 13131000 0 0 0 9367 1603 9582 24834;24835 38946;38947 38947 2 LYQYPNFAGPHAALANK AVYVPGSKGAPSFVRLYQYPNFAGPHAALA QYPNFAGPHAALANKSFFKADKVTMLWNKK R L Y N K S 4 0 2 0 0 1 0 1 1 0 2 1 0 1 2 0 0 0 2 0 0 0 17 0 1873.9475 Q9BY44;C9IZE1;F8WAE5 Q9BY44 200 216 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 3 0.047484 14.959 1 1.4875 1.2373 NaN 1 Median NaN NaN NaN 0 0 Median 1.4875 1.2373 NaN 1 0 Median 1559100 662370 896710 0 0 0 1559100 662370 896710 9368 2017 9583 24836 38948 38948 1 LYSILQGDSPTK LFENQTPAHVYYRWKLYSILQGDSPTKWRT RWKLYSILQGDSPTKWRTEDFRMFKNGSFW K L Y T K W 0 0 0 1 0 1 0 1 0 1 2 1 0 0 1 2 1 0 1 0 0 0 12 0 1320.6925 O15042 O15042 477 488 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 0.00021727 82.261 1 1.9216 1.9686 NaN 1 Median 1.9216 1.9686 NaN 1 0 Median NaN NaN NaN 0 0 Median 10573000 4358800 6214400 10573000 4358800 6214400 0 0 0 9369 1374 9584 24837 38949 38949 1 LYSLALHPNAFK QQEKSPVNTKSLFKRLYSLALHPNAFKRLG FKRLYSLALHPNAFKRLGASLAFNNIYREF R L Y F K R 2 0 1 0 0 0 0 0 1 0 3 1 0 1 1 1 0 0 1 0 0 0 12 0 1372.7503 P78527;B4DL41 P78527 1063 1074 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2;3 0.00037604 54.416 2 3 0.37975 0.30116 45.967 5 Median 0.62733 0.67406 7.9559 2 0 Median 0.36034 0.29462 3.3559 3 0 Median 101790000 67303000 34491000 78049000 50106000 27942000 23746000 17197000 6548800 9370 1665 9585 24838;24839;24840;24841;24842 38950;38951;38952;38953;38954;38955;38956 38952 7 LYSLPNPSVLVSLR VFSLIKSCYKQVSSKLYSLPNPSVLVSLRL KLYSLPNPSVLVSLRLDFLRIICSHEHYVT K L Y L R L 0 1 1 0 0 0 0 0 0 0 4 0 0 0 2 3 0 0 1 2 0 0 14 0 1556.8926 Q96N67;A0A1B0GWE0 Q96N67 1105 1118 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.00016878 73.781 2 1.4067 1.4849 1.1055 2 Median 1.4067 1.4849 1.1055 2 0 Median NaN NaN NaN 0 0 Median 7982500 3828700 4153800 7982500 3828700 4153800 0 0 0 9371 1981 9586 24843;24844 38957;38958;38959 38957 3 LYSPSQIGAFVLMK VRASNGDAWVEAHGKLYSPSQIGAFVLMKM KLYSPSQIGAFVLMKMKETAENYLGHTAKN K L Y M K M 1 0 0 0 0 1 0 1 0 1 2 1 1 1 1 2 0 0 1 1 0 0 14 0 1552.8323 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;Q2F839 B7Z4V2 146 159 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 6.9811E-10 120.06 2 1 2.4103 2.6059 75.906 3 Median 2.5385 2.693 4.6471 2 0 Median 0.93227 0.72409 NaN 1 0 Median 72851000 23598000 49253000 69414000 21833000 47582000 3436700 1765500 1671100 9372 1092 9587 24845;24846;24847 38960;38961;38962;38963;38964 38962 836 5 LYSTIRPYLESK VVALAPCADEAAISKLYSTIRPYLESKAHG ISKLYSTIRPYLESKAHGVQKKAYRVLEEV K L Y S K A 0 1 0 0 0 0 1 0 0 1 2 1 0 0 1 2 1 0 2 0 0 0 12 1 1468.7926 B3KMR5;Q5JTH9;B3KY97 B3KMR5 772 783 RRP12 RRP12-like protein yes no 3 0.010627 34.75 1 1.2985 1.4955 NaN 1 Median 1.2985 1.4955 NaN 1 0 Median NaN NaN NaN 0 0 Median 27812000 10430000 17382000 27812000 10430000 17382000 0 0 0 9373 907 9588 24848 38965 38965 1 LYSVSYLLK RTPCEEILVKHVGSRLYSVSYLLKDKGEYT KHVGSRLYSVSYLLKDKGEYTLVVKWGDEH R L Y L K D 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 2 0 0 2 1 0 0 9 0 1084.6168 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2613 2621 FLNA;FLJ00119 Filamin-A yes no 2 0.00048269 98.629 2 1.2726 1.3333 12.99 2 Median 1.2726 1.3333 12.99 2 0 Median NaN NaN NaN 0 0 Median 65315000 34574000 30741000 65315000 34574000 30741000 0 0 0 9374 1504 9589 24849;24850 38966;38967;38968;38969 38968 4 LYTEDEFEK RTGRAGREDSGICYRLYTEDEFEKFDKMTV SGICYRLYTEDEFEKFDKMTVPEIQRCNLA R L Y E K F 0 0 0 1 0 0 3 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1172.5237 B4DIS6;Q9H6R0;I3L1L6;Q9NPV4;Q05BE5 B4DIS6 476 484 DHX33;DKFZp762F2011 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.008633 60.91 1 1.1754 0.93209 NaN 1 Median NaN NaN NaN 0 0 Median 1.1754 0.93209 NaN 1 0 Median 4381300 2147900 2233400 0 0 0 4381300 2147900 2233400 9375 983 9590 24851 38970 38970 1 LYTLQDK RVTAIHIDPATHRQKLYTLQDKAQVADVVV DPATHRQKLYTLQDKAQVADVVVSRWLRVT K L Y D K A 0 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 879.47018 A0A0U1RQF0;P49327 A0A0U1RQF0 1066 1072 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.02687 84.244 1 1.4974 1.6164 NaN 1 Median 1.4974 1.6164 NaN 1 0 Median NaN NaN NaN 0 0 Median 21838000 7528100 14310000 21838000 7528100 14310000 0 0 0 9376 587 9591 24852 38971;38972 38971 2 LYTLVTYVPVTTFK RLSRKRNEDEDSPNKLYTLVTYVPVTTFKI KLYTLVTYVPVTTFKIFFLR__________ K L Y F K I 0 0 0 0 0 0 0 0 0 0 2 1 0 1 1 0 4 0 2 3 0 0 14 0 1643.9174 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;Q76N53 H7C2W9 90 103 RPL31 60S ribosomal protein L31 yes no 2 9.9197E-15 134.75 5 3 0.8131 0.86037 9.4314 6 Median 0.78808 0.9019 3.1618 3 0 Median 0.89617 0.78365 6.0849 3 0 Median 3190200000 1781900000 1408300000 2205500000 1253200000 952330000 984640000 528690000 455950000 9377 825 9592 24853;24854;24855;24856;24857;24858;24859;24860 38973;38974;38975;38976;38977;38978;38979;38980;38981;38982;38983;38984;38985;38986;38987;38988;38989;38990;38991;38992;38993;38994 38980 22 LYTSAPNTSQGK DMNSEGNVDFECDTKLYTSAPNTSQGKDNS DTKLYTSAPNTSQGKDNSVLLVLSSDESQQ K L Y G K D 1 0 1 0 0 1 0 1 0 0 1 1 0 0 1 2 2 0 1 0 0 0 12 0 1265.6252 Q5QJE6;J3KP30;B7Z854 Q5QJE6 426 437 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 1.1976E-37 179.1 2 2 1.1989 1.1396 11.318 4 Median 0.90897 1.0211 5.478 2 0 Median 1.5287 1.2323 1.0028 2 0 Median 234370000 117970000 116400000 185650000 99375000 86270000 48730000 18596000 30134000 9378 1813 9593 24861;24862;24863;24864 38995;38996;38997;38998;38999;39000;39001 38996 7 LYVGGLSQDISEADLQNQFSR ______________________________ SQDISEADLQNQFSRFGEVSDVEIITRKDD R L Y S R F 1 1 1 2 0 3 1 2 0 1 3 0 0 1 0 3 0 0 1 1 0 0 21 0 2339.1394 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H532;F5H0I5;F5GXV1 A0A024R250 10 30 NOL8 Nucleolar protein 8 yes no 2 1.0688E-08 82.908 2 2 1.1915 1.0681 2.1865 4 Median 1.0417 1.0583 2.8354 2 0 Median 1.3176 1.0725 2.1251 2 0 Median 59950000 26636000 33314000 36997000 16800000 20197000 22953000 9836000 13117000 9379 104 9594 24865;24866;24867;24868 39002;39003;39004;39005;39006;39007;39008;39009;39010 39005 9 LYVHEAVK QAATGFLVDPVRNQRLYVHEAVKAGVVGPE DPVRNQRLYVHEAVKAGVVGPELHEQLLSA R L Y V K A 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 2 0 0 8 0 957.52837 Q15149;D3DWL0 Q15149 3544 3551 PLEC;PLEC1 Plectin yes no 2;3 0.0095922 74.184 2 1 2.1043 2.181 8.9916 3 Median 1.9517 2.1655 12.703 2 0 Median 2.8038 2.181 NaN 1 0 Median 128470000 41737000 86730000 124790000 40643000 84147000 3678000 1094400 2583700 9380 1754 9595 24869;24870;24871 39011;39012;39013;39014 39013 4 LYVWDLEVEDPHK DFWQKMLALGNQVGKLYVWDLEVEDPHKAK GKLYVWDLEVEDPHKAKCTTLTHHKCGAAI K L Y H K A 0 0 0 2 0 0 2 0 1 0 2 1 0 0 1 0 0 1 1 2 0 0 13 0 1641.8039 O75530;E9PJK2;H0YEL4;E9PMU3 O75530 386 398 EED Polycomb protein EED yes no 3 0.00093847 40.066 1 0.90091 0.88678 NaN 1 Median 0.90091 0.88678 NaN 1 0 Median NaN NaN NaN 0 0 Median 19795000 9482100 10313000 19795000 9482100 10313000 0 0 0 9381 1407 9596 24872 39015 39015 1 LYYDTDYGSK EASVDPSLSWGQRKKLYYDTDYGSKSRGRQ GQRKKLYYDTDYGSKSRGRQSQQEAEEEER K L Y S K S 0 0 0 2 0 0 0 1 0 0 1 1 0 0 0 1 1 0 3 0 0 0 10 0 1223.5346 Q9NQZ2 Q9NQZ2 135 144 UTP3 Something about silencing protein 10 yes yes 2 0.00013082 96.331 2 2 1.1385 1.0712 1.7169 4 Median 0.98286 1.083 2.5584 2 0 Median 1.3376 1.0711 1.0317 2 0 Median 123800000 60181000 63622000 101930000 50896000 51037000 21871000 9284900 12586000 9382 2063 9597 24873;24874;24875;24876 39016;39017;39018;39019;39020;39021;39022;39023 39017 8 LYYFQYPCYQEGLR LARHSNVNLTIFTARLYYFQYPCYQEGLRS RLYYFQYPCYQEGLRSLSQEGVAVEIMDYE R L Y L R S 0 1 0 0 1 2 1 1 0 0 2 0 0 1 1 0 0 0 4 0 0 0 14 0 1898.8662 M4VP52;Q59GY0;Q9NRW3 M4VP52 123 136 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes no 2 0.00049381 60.434 2 2 0.57367 0.54749 18.294 4 Median 0.57367 0.57297 2.2331 2 0 Median 0.53899 0.45564 21.772 2 0 Median 34991000 20959000 14032000 20400000 12260000 8139400 14591000 8698800 5892100 9383 1357 9598 24877;24878;24879;24880 39024;39025;39026;39027;39028;39029;39030 39027 7 MAAENSEEGNTCIIPQR HMQSSALVESLITVKMAAENSEEGNTCIIP AENSEEGNTCIIPQRNLFKALSEEAWNSGF K M A Q R N 2 1 2 0 1 1 3 1 0 2 0 0 1 0 1 1 1 0 0 0 0 0 17 0 1918.8513 A0A1B0GUH9;A0A1P0AZG4 A0A1B0GUH9 297 313 yes no 2 0.0013502 53.967 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9384 630 9599 24881 39031 39031 489 1 MAEAGFIHCPTENEPDLAQCFFCFK KNWPFLEGCACTPERMAEAGFIHCPTENEP TENEPDLAQCFFCFKELEGWEPDDDPIEEH R M A F K E 3 0 1 1 3 1 3 1 1 1 1 1 1 4 2 0 1 0 0 0 0 0 25 0 3018.2809 B7Z7B9;E7CU85;A0A0B4J1S3;O15392;A3E0Z5;H3BLT4;K7EMW2;A3E0Z4;A3E0Z6;A3E0Z7;A3E0Z8;K7EP76;K7ELG2 B7Z7B9 38 62 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 3 7.654E-14 83.905 2 4 0.94265 0.98717 17.338 6 Median 0.88481 0.98717 3.0177 2 0 Median 1.1641 0.94342 22.07 4 0 Median 222420000 114720000 107700000 125720000 67464000 58251000 96704000 47257000 49447000 9385 498 9600;9601 24882;24883;24884;24885;24886;24887 39032;39033;39034;39035;39036;39037;39038;39039;39040;39041 39032 344 10 MAEIGEHVAPSEAANSLEQAQAAAER ETIELTEDRRAFAARMAEIGEHVAPSEAAN EAANSLEQAQAAAERLGYPVLVRAAFALGG R M A E R L 8 1 1 0 0 2 5 1 1 1 1 0 1 0 1 2 0 0 0 1 0 0 26 0 2679.2559 Q53SY7;F8VPD4;P27708 Q53SY7 448 473 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 3.4952E-14 83.881 1 1.1194 1.1107 NaN 1 Median 1.1194 1.1107 NaN 1 0 Median NaN NaN NaN 0 0 Median 15942000 6748200 9194000 15942000 6748200 9194000 0 0 0 9386 1259 9602 24888 39042;39043;39044;39045 39044 963 4 MAGDPVANVR GQDITTKHMLPTVLRMAGDPVANVRFNVAK PTVLRMAGDPVANVRFNVAKSLQKIGPILD R M A V R F 2 1 1 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 2 0 0 10 0 1028.5073 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;E9PH38;B4E1Q0 B4DQY1 494 503 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.0018044 63.216 1 1.6012 1.6221 NaN 1 Median 1.6012 1.6221 NaN 1 0 Median NaN NaN NaN 0 0 Median 18038000 6825300 11213000 18038000 6825300 11213000 0 0 0 9387 723 9603 24889 39046;39047 39046 558 2 MAGIDDCYTSAR ______________________________ ______________________________ M M A A R G 2 1 0 2 1 0 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 0 12 0 1358.5595 Q8NI62 Q8NI62 2 13 OK/KNS-cl.6 yes yes 2 7.0737E-05 93.096 3 4 0.84379 0.82623 13.034 7 Median 0.84379 0.84655 10.902 3 0 Median 0.86453 0.74901 14.388 4 0 Median 61814000 29355000 32459000 48094000 22154000 25940000 13720000 7201200 6518800 9388 1930 9604;9605 24890;24891;24892;24893;24894;24895;24896 39048;39049;39050;39051;39052;39053;39054;39055;39056;39057 39049 1767 10 MAIMVQSPMFDGK SCKKCSESIPKDSLRMAIMVQSPMFDGKVP LRMAIMVQSPMFDGKVPHWYHFSCFWKVGH R M A G K V 1 0 0 1 0 1 0 1 0 1 0 1 3 1 1 1 0 0 0 1 0 0 13 0 1453.6768 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q5VX84;Q5VX85 A0A024R3T8 35 47 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.8537E-11 125.22 4 5 1.4068 1.3777 NaN 1 Median 1.4068 1.3777 NaN 1 0 Median NaN NaN NaN 0 0 Median 22152000 7652800 14499000 22152000 7652800 14499000 0 0 0 9389 139 9606 24897;24898;24899;24900;24901;24902;24903;24904;24905 39058;39059;39060;39061;39062;39063;39064;39065;39066 39058 121;122;123 9 MAKPEEVLVVENDQGEVVR YLPMLFKVRLLMVSRMAKPEEVLVVENDQG EEVLVVENDQGEVVREFMKDTDSINLYKNM R M A V R E 1 1 1 1 0 1 4 1 0 0 1 1 1 0 1 0 0 0 0 5 0 0 19 1 2140.0834 O14980;B3KWD0;B7ZB16;B4DR01 O14980 424 442 XPO1 Exportin-1 yes no 3 2.2136E-13 99.891 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5517400 0 5517400 5517400 0 5517400 0 0 0 9390 1371 9607 24906 39067 39067 1036 1 MALDIEIATYR MARHLREYQDLLNVKMALDIEIATYRKLLE LNVKMALDIEIATYRKLLEGEESRISLPLP K M A Y R K 2 1 0 1 0 0 1 0 0 2 1 0 1 0 0 0 1 0 1 0 0 0 11 0 1294.6591 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;H7C5W5;B3KWQ6;P41219 V9HWE1 391 401 HEL113;VIM;PRPH Vimentin;Peripherin yes no 2 8.9899E-13 142.43 2 1 1.6053 1.7113 NaN 1 Median 1.6053 1.7113 NaN 1 0 Median NaN NaN NaN 0 0 Median 43857000 16896000 26961000 43857000 16896000 26961000 0 0 0 9391 1457 9608 24907;24908;24909 39068;39069;39070 39068 1175 3 MALELLTQEFGIPIER GSWSFGDYFKELACKMALELLTQEFGIPIE ALELLTQEFGIPIERLYVTYFGGDEAAGLE K M A E R L 1 1 0 0 0 1 3 1 0 2 3 0 1 1 1 0 1 0 0 0 0 0 16 0 1858.9863 P49588 P49588 117 132 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 2.9186E-19 122.45 2 4.8387 4.9032 22.266 2 Median 4.8387 4.9032 22.266 2 0 Median NaN NaN NaN 0 0 Median 27651000 6314900 21336000 27651000 6314900 21336000 0 0 0 9392 1583 9609 24910;24911 39071;39072 39072 1367 0 MALIMEPVSK ______________________________ ______________________________ - M A S K W 1 0 0 0 0 0 1 0 0 1 1 1 2 0 1 1 0 0 0 1 0 0 10 0 1117.5875 Q8WXI2 Q8WXI2 1 10 CNKSR2 Connector enhancer of kinase suppressor of ras 2 yes yes 2 0.031096 44.395 1 0.82132 0.81488 NaN 1 Median 0.82132 0.81488 NaN 1 0 Median NaN NaN NaN 0 0 Median 25975000 14466000 11510000 25975000 14466000 11510000 0 0 0 9393 1943 9610 24912 39073 39073 1786;1787 1 MALNHPYFNDLDNQIK SKMLIYDPAKRISGKMALNHPYFNDLDNQI ALNHPYFNDLDNQIKKM_____________ K M A I K K 1 0 3 2 0 1 0 0 1 1 2 1 1 1 1 0 0 0 1 0 0 0 16 0 1931.92 A0A024QZP7;P06493;Q5H9N4;A0A024QZJ8 A0A024QZP7 280 295 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 3 1.2905E-07 98.508 2 1 1.4725 1.6452 38.386 3 Median 1.524 1.6851 3.3912 2 0 Median 1.0615 0.86786 NaN 1 0 Median 146070000 61911000 84156000 140520000 59220000 81297000 5550300 2691000 2859300 9394 25 9611 24913;24914;24915 39074;39075;39076;39077 39076 12 4 MALTLLDYLFHR SDMLHISTNCRTAEKMALTLLDYLFHREVQ AEKMALTLLDYLFHREVQAVSNLSGQGKHG K M A H R E 1 1 0 1 0 0 0 0 1 0 4 0 1 1 0 0 1 0 1 0 0 0 12 0 1491.7908 A0A0S2Z696;B3KM38;A0A0S2Z5C2;A0A0S2Z5G4;B4DE54;A0A0S2Z5M2;Q8N9N5 A0A0S2Z696 259 270 BANP Protein BANP yes no 2 0.011097 49.06 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9395 579 9612 24916 39078 39078 432 1 MANVLDEPGQDLEADFPK LFGPARDDVLAMAVKMANVLDEPGQDLEAD VLDEPGQDLEADFPKNPLDINPSVDFLFDC K M A P K N 2 0 1 3 0 1 2 1 0 0 2 1 1 1 2 0 0 0 0 1 0 0 18 0 1987.9197 A6NHB5;Q14202;A6NHN7 A6NHB5 987 1004 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 4.9111E-05 65.179 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9554200 9554200 0 9554200 9554200 0 0 0 0 9396 681 9613 24917;24918 39079;39080;39081 39079 528 3 MAPALSGANLTSPR RTAAALAPASLTSARMAPALSGANLTSPRV RMAPALSGANLTSPRVPLSAYERVSGRTSP R M A P R V 3 1 1 0 0 0 0 1 0 0 2 0 1 0 2 2 1 0 0 0 0 0 14 0 1384.7133 A0A140VK53;Q9UQ35;O60382 A0A140VK53 2371 2384 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.00095873 65.348 1 1.9345 2.1162 NaN 1 Median 1.9345 2.1162 NaN 1 0 Median NaN NaN NaN 0 0 Median 34240000 11841000 22399000 34240000 11841000 22399000 0 0 0 9397 619 9614 24919 39082 39082 473 0 MAPVITEETTLQLEDIIK NSLLEETLHFDHAVRMAPVITEETTLQLED VITEETTLQLEDIIKQRIRDQAWDDVVRKE R M A I K Q 1 0 0 1 0 1 3 0 0 3 2 1 1 0 1 0 3 0 0 1 0 0 18 0 2043.081 B3KPV5;O00566 B3KPV5 413 430 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 6.6506E-31 148.96 2 1 1.2049 1.3083 16.08 3 Plateau 1.1541 1.2907 8.1673 2 0 Median 1.2049 0.99529 NaN 1 0 Median 152970000 68709000 84261000 121460000 54916000 66544000 31510000 13792000 17717000 9398 924 9615 24920;24921;24922 39083;39084;39085;39086;39087 39086 757 5 MAPVPLDDSNRPASLTK KMIASDSHRPEVKLKMAPVPLDDSNRPASL PVPLDDSNRPASLTKDRLLASTLVHSVKKE K M A T K D 2 1 1 2 0 0 0 0 0 0 2 1 1 0 3 2 1 0 0 1 0 0 17 1 1810.9247 Q9NYF8;Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 551 567 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2;3 4.7816E-05 51.286 3 1.287 1.4977 7.3402 2 Median 1.287 1.4977 7.3402 2 0 Median NaN NaN NaN 0 0 Median 62618000 26108000 36509000 62618000 26108000 36509000 0 0 0 9399 2083 9616 24923;24924;24925 39088;39089;39090 39089 1920 3 MAPYQGPDAVPGALDYK RRELPPDQAEYCIARMAPYQGPDAVPGALD PYQGPDAVPGALDYKSFSTALYGESDL___ R M A Y K S 3 0 0 2 0 1 0 2 0 0 1 1 1 0 3 0 0 0 2 1 0 0 17 0 1791.8502 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144;A0A0S2Z3X3;A0A0S2Z3C0 A0A0S2Z3G9 883 899 ACTN4 Alpha-actinin-4 yes no 2 4.5291E-06 92.856 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9400 548 9617 24926 39091 39091 401 1 MAQALEELR LVEVDSSRQQEYDFKMAQALEELRSQHDEQ QEYDFKMAQALEELRSQHDEQVRLYKLELE K M A L R S 2 1 0 0 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1059.5383 Q03252;A0A0A7M1X5 Q03252 256 264 LMNB2 Lamin-B2 yes no 2 0.00037243 87.476 2 0.31132 0.3185 NaN 1 Median 0.31132 0.3185 NaN 1 0 Median NaN NaN NaN 0 0 Median 47756000 20908000 26849000 47756000 20908000 26849000 0 0 0 9401 1682 9618 24927;24928 39092;39093 39093 1498 2 MAQEVLTHLK NVVNCLYHGEGAQQRMAQEVLTHLKEHPDA GAQQRMAQEVLTHLKEHPDAWTRVDTILEF R M A L K E 1 0 0 0 0 1 1 0 1 0 2 1 1 0 0 0 1 0 0 1 0 0 10 0 1168.6274 O14980;H7BZC5;C9IZS4;C9JQ02;C9JV99;C9J673;C9JKM9;C9JF49;C9IYM2;F8WF71 O14980 45 54 XPO1 Exportin-1 yes no 2 6.5715E-05 80.755 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9402 1371 9619 24929;24930 39094;39095 39095 1037 2 MASTFIGNSTAIQELFK NVKVAVCDIPPRGLKMASTFIGNSTAIQEL STFIGNSTAIQELFKRISEQFSAMFRRKAF K M A F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 17 0 1856.9342 Q9BUF5;B4DP54;B3KS31;B4E386 Q9BUF5 363 379 TUBB6 Tubulin beta-6 chain no no 2 2.2532E-18 134.56 2 1.3557 1.3946 32.868 2 Median 1.3557 1.3946 32.868 2 0 Median NaN NaN NaN 0 0 Median 27930000 12429000 15501000 27930000 12429000 15501000 0 0 0 9403 2004 9620;9621 24931;24932 39096;39097 39096 1847 2 MATEVAADALGEEWK EVDDERKLRTFYEKRMATEVAADALGEEWK MATEVAADALGEEWKGYVVRISGGNDKQGF R M A W K G 4 0 0 1 0 0 3 1 0 0 1 1 1 0 0 0 1 1 0 1 0 0 15 0 1619.7501 Q96DV6;A2A3R6;P62753;A2A3R7;A2A3R5 Q96DV6 32 46 RPS6 40S ribosomal protein S6 no no 2 1.4382E-134 263.07 7 7 1.2609 1.0814 21.696 10 Median 0.84595 0.96492 9.112 4 0 Median 1.7331 1.413 16.26 6 0 Median 1941500000 985940000 955540000 1459600000 793570000 666040000 481870000 192370000 289500000 9404 649;648 9622;9623;9624 24933;24934;24935;24936;24937;24938;24939;24940;24941;24942;24943;24944;24945;24946 39098;39099;39100;39101;39102;39103;39104;39105;39106;39107;39108;39109;39110;39111;39112;39113;39114;39115;39116;39117;39118;39119;39120;39121;39122;39123;39124;39125;39126;39127;39128;39129;39130;39131 39108 503;504 34 MAVLALLAK KCDSWWAKDSPLETKMAVLALLAKILQIDS SPLETKMAVLALLAKILQIDSSVSFNTSHG K M A A K I 3 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 9 0 928.57796 P78527 P78527 1643 1651 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.001805 73.616 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24323000 24323000 0 22298000 22298000 0 2024900 2024900 0 9405 1665 9625;9626 24947;24948;24949;24950;24951 39132;39133;39134;39135;39136;39137 39132 1456 6 MAVTFIGNSTAIQELFK NVKTAVCDIPPRGLKMAVTFIGNSTAIQEL VTFIGNSTAIQELFKRISEQFTAMFRRKAF K M A F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 1 0 0 17 0 1868.9706 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCU2 Q5JP53 345 361 TUBB Tubulin beta chain yes no 2 3.1692E-58 186.91 4 1 1.2317 1.2555 63.013 5 Median 2.5344 2.9401 49.954 4 0 Linear 0.82311 0.67856 NaN 1 0 Median 532110000 164070000 368040000 502350000 148030000 354320000 29761000 16041000 13720000 9406 1452 9627;9628 24952;24953;24954;24955;24956 39138;39139;39140;39141;39142;39143;39144;39145;39146 39140 1156 8 MAVTFIGNSTAIQELFKR NVKTAVCDIPPRGLKMAVTFIGNSTAIQEL TFIGNSTAIQELFKRISEQFTAMFRRKAFL K M A K R I 2 1 1 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 1 0 0 18 1 2025.0717 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCU2 Q5JP53 345 362 TUBB Tubulin beta chain yes no 3 6.1415E-06 74.12 3 1.0117 0.87049 10.93 3 Median NaN NaN NaN 0 0 Median 1.0117 0.87049 10.93 3 0 Median 5999100 3082400 2916800 0 0 0 5999100 3082400 2916800 9407 1452 9629;9630 24957;24958;24959 39147;39148;39149 39147 1156 2 MCLFAGFQR ILDQTNVSAAAQRRKMCLFAGFQRKAVVVC AAQRRKMCLFAGFQRKAVVVCPKDEDYKQR K M C Q R K 1 1 0 0 1 1 0 1 0 0 1 0 1 2 0 0 0 0 0 0 0 0 9 0 1128.5209 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 552 560 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.002576 67.032 1 2 1.7738 2.0029 NaN 1 Median 1.7738 2.0029 NaN 1 0 Median NaN NaN NaN 0 0 Median 50886000 21855000 29031000 47165000 18133000 29031000 3721300 3721300 0 9408 999 9631 24960;24961;24962 39150;39151;39152 39150 791 3 MDAILTEAIK RAQKQTPMASSPRPKMDAILTEAIKACFQK SPRPKMDAILTEAIKACFQKSGASVVAIRK K M D I K A 2 0 0 1 0 0 1 0 0 2 1 1 1 0 0 0 1 0 0 0 0 0 10 0 1103.5896 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 161 170 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0035438 64.04 1 2 1.2034 0.97416 24.089 3 Median 0.61215 0.64588 NaN 1 0 Median 1.2101 0.98016 0.86754 2 0 Median 35935000 19162000 16772000 19973000 11648000 8325600 15961000 7514600 8446600 9409 1817 9632 24963;24964;24965 39153;39154;39155;39156;39157 39153 5 MDCQECPEGYR AGALSVTIDGPSKVKMDCQECPEGYRVTYT SKVKMDCQECPEGYRVTYTPMAPGSYLISI K M D Y R V 0 1 0 1 2 1 2 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 11 0 1443.5217 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2474 2484 FLNA;FLJ00119 Filamin-A yes no 2 0.00021121 78.655 3 1.6429 1.6863 9.1722 2 Median 1.6429 1.6863 9.1722 2 0 Median NaN NaN NaN 0 0 Median 10876000 3853600 7022400 10876000 3853600 7022400 0 0 0 9410 1504 9633 24966;24967;24968 39158;39159;39160;39161 39160 1269 4 MDDPDYWR KPLRTRDELDQFLDKMDDPDYWRTVQDPMT LDQFLDKMDDPDYWRTVQDPMTGRDLRLTD K M D W R T 0 1 0 3 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 8 0 1096.4284 Q14137;B2RDN4;A8K3R2;B4DEN9;A0A075B729 Q14137 176 183 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.0073259 61.962 2 0.89169 0.91072 12.66 2 Median 0.89169 0.91072 12.66 2 0 Median NaN NaN NaN 0 0 Median 29604000 14698000 14906000 29604000 14698000 14906000 0 0 0 9411 1726 9634 24969;24970 39162;39163;39164 39163 1562 3 MDDPTVNWSNER AKTAGVKHLIVLINKMDDPTVNWSNERYEE INKMDDPTVNWSNERYEECKEKLVPFLKKV K M D E R Y 0 1 2 2 0 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 0 0 12 0 1462.6147 H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170 H3BR35 228 239 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 2 0.00010138 84.17 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5006200 0 5006200 5006200 0 5006200 0 0 0 9412 715 9635 24971;24972 39165;39166 39166 550 2 MDDREDLVYQAK ______________________________ ______________________________ - M D A K L 1 1 0 3 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 12 1 1481.682 V9HW98;P62258;B4DJB0;B4DJF2;I3L3T1;I3L0W5 V9HW98 1 12 HEL2;YWHAE 14-3-3 protein epsilon yes no 2 3.0643E-05 94.465 2 2.1241 2.4516 NaN 1 Median 2.1241 2.4516 NaN 1 0 Median NaN NaN NaN 0 0 Median 40404000 11116000 29289000 40404000 11116000 29289000 0 0 0 9413 1637 9636 24973;24974 39167;39168;39169;39170 39169 1417 4 MDFEDDYTHSACR ______________________________ ______________________________ - M D C R N 1 1 0 3 1 0 1 0 1 0 0 0 1 1 0 1 1 0 1 0 0 0 13 0 1645.6137 Q5BKZ1;A0A0A0MRN4;E2QRN4 Q5BKZ1 1 13 ZNF326 DBIRD complex subunit ZNF326 yes no 2 8.7093E-05 80.979 2 1.2493 1.2604 NaN 1 Median 1.2493 1.2604 NaN 1 0 Median NaN NaN NaN 0 0 Median 6042000 2740900 3301100 6042000 2740900 3301100 0 0 0 9414 1804 9637 24975;24976 39171;39172 39172 1671 2 MDGPGYGDEEEPLHTILGK SFFTVGDDKTVKQWKMDGPGYGDEEEPLHT GYGDEEEPLHTILGKTVYTGIDHHWKEAVF K M D G K T 0 0 0 2 0 0 3 4 1 1 2 1 1 0 2 0 1 0 1 0 0 0 19 0 2056.9412 A0A087WT20;Q9NV06;B3KME9;A0A087X1F8;E5RHM4 A0A087WT20 290 308 DCAF13 DDB1- and CUL4-associated factor 13 yes no 3 4.272E-06 65.175 1 1 1.2049 1.1246 30.272 2 Median 1.2764 1.393 NaN 1 0 Median 1.1374 0.9079 NaN 1 0 Median 59723000 25053000 34670000 50416000 20444000 29972000 9306900 4609100 4697800 9415 402 9638 24977;24978 39173;39174;39175 39173 291 3 MDLAAAAEPGAGSQHLEVR ______________________________ AAAEPGAGSQHLEVRDEVAEKCQKLFLDFL - M D V R D 5 1 0 1 0 1 2 2 1 0 2 0 1 0 1 1 0 0 0 1 0 0 19 0 1921.9316 Q14566;B4E0N7;Q53T61 Q14566 1 19 MCM6 DNA replication licensing factor MCM6 yes no 2 1.2417E-06 84.753 1 1.6676 1.6746 NaN 1 Median 1.6676 1.6746 NaN 1 0 Median NaN NaN NaN 0 0 Median 7893300 3373800 4519500 7893300 3373800 4519500 0 0 0 9416 1734 9639 24979 39176;39177;39178 39178 1567 3 MDLAAAAEPGAGSQHLEVRDEVAEK ______________________________ AGSQHLEVRDEVAEKCQKLFLDFLEEFQSS - M D E K C 6 1 0 2 0 1 4 2 1 0 2 1 1 0 1 1 0 0 0 2 0 0 25 1 2593.2442 Q14566;B4E0N7;Q53T61 Q14566 1 25 MCM6 DNA replication licensing factor MCM6 yes no 3 1.947E-12 66.871 1 1.8383 2.064 NaN 1 Median 1.8383 2.064 NaN 1 0 Median NaN NaN NaN 0 0 Median 12904000 4681300 8223000 12904000 4681300 8223000 0 0 0 9417 1734 9640 24980 39179 39179 1567 1 MDLNSEQAEQLER LSKVQKNHVGKPLLKMDLNSEQAEQLERIN LKMDLNSEQAEQLERINDALSCEYECRRRM K M D E R I 1 1 1 1 0 2 3 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 13 0 1561.7042 Q52LJ0 Q52LJ0 197 209 FAM98B Protein FAM98B yes yes 2 2.7791E-09 119.45 3 1.6525 1.6441 22.023 2 Median 1.6525 1.6441 22.023 2 0 Median NaN NaN NaN 0 0 Median 37249000 11249000 26000000 37249000 11249000 26000000 0 0 0 9418 1782 9641 24981;24982;24983 39180;39181;39182 39181 1650 3 MDPAEEDTNVYTEK ______________________________ ______________________________ - M D E K H 1 0 1 2 0 0 3 0 0 0 0 1 1 0 1 0 2 0 1 1 0 0 14 0 1640.6876 B4DT61;E5RJB8;E5RHU3;E7ESK6;E9PBI9;B7Z5H2;B4DQ56;A0A024R9D1;P34741 B4DT61 1 14 SDC2 Syndecan;Syndecan-2 yes no 2 0.00013418 79.492 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3614200 0 3614200 3614200 0 3614200 0 0 0 9419 274 9642 24984;24985 39183;39184 39183 210 2 MDPDLSLTHK IGIYEYGYGSWEMIKMDPDLSLTHKILPDD WEMIKMDPDLSLTHKILPDDPDKKPQAKQL K M D H K I 0 0 0 2 0 0 0 0 1 0 2 1 1 0 1 1 1 0 0 0 0 0 10 0 1155.5594 O14646 O14646 1278 1287 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.0013942 67.081 2 1.324 1.3486 NaN 1 Median 1.324 1.3486 NaN 1 0 Median NaN NaN NaN 0 0 Median 17948000 6730100 11218000 17948000 6730100 11218000 0 0 0 9420 1366 9643 24986;24987 39185;39186 39185 1032 2 MDQADAQFHFVLNQSPNNIPALLGK HLLGRACFCLLEGDKMDQADAQFHFVLNQS VLNQSPNNIPALLGKACISFNKKDYRGALA K M D G K A 3 0 3 2 0 3 0 1 1 1 3 1 1 2 2 1 0 0 0 1 0 0 25 0 2767.3752 A8K6X9;Q6PD62;H0YCE8 A8K6X9 145 169 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 1.2098E-06 46.839 1 1.9302 1.9638 NaN 1 Median 1.9302 1.9638 NaN 1 0 Median NaN NaN NaN 0 0 Median 30433000 9054700 21379000 30433000 9054700 21379000 0 0 0 9421 765 9644 24988 39187 39187 593 1 MDQGNYTSVLEFSDDIVK QDDQQPLDLEGVKRKMDQGNYTSVLEFSDD GNYTSVLEFSDDIVKIIQAAINSDGGQPEI K M D V K I 0 0 1 3 0 1 1 1 0 1 1 1 1 1 0 2 1 0 1 2 0 0 18 0 2059.9408 Q03164 Q03164 1715 1732 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 7.0905E-05 48.704 1 1.092 1.1007 NaN 1 Median 1.092 1.1007 NaN 1 0 Median NaN NaN NaN 0 0 Median 7134700 3683300 3451300 7134700 3683300 3451300 0 0 0 9422 1680 9645 24989 39188 39188 1491 1 MDQYFNQMEK TTIGKDLDFEKAKPRMDQYFNQMEKIIKEK KAKPRMDQYFNQMEKIIKEKKTSSRIRFML R M D E K I 0 0 1 1 0 2 1 0 0 0 0 1 2 1 0 0 0 0 1 0 0 0 10 0 1332.5479 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;Q96I65;H7C044;B4DZE1;B4DH17;A0A0A0MSA7;A0A0U1RQK7;Q59GJ0;O43432 E7EX73 792 801 EIF4G1;EIF4G1 variant protein;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 yes no 2 2.1015E-05 95.642 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14532000 0 14532000 14532000 0 14532000 0 0 0 9423 896 9646 24990;24991 39189;39190 39189 704;705 2 MDSFDEDLAR KSSFSITREAQVNVRMDSFDEDLARPSGLL QVNVRMDSFDEDLARPSGLLAQERKLCRDL R M D A R P 1 1 0 3 0 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 10 0 1197.4972 Q9Y2W1 Q9Y2W1 573 582 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 6.5359E-06 102.61 2 1.4702 1.5693 11.442 2 Median 1.4702 1.5693 11.442 2 0 Median NaN NaN NaN 0 0 Median 54725000 22114000 32611000 54725000 22114000 32611000 0 0 0 9424 2128 9647 24992;24993 39191;39192;39193;39194;39195 39192 1955 5 MDSFDEDLARPSGLLAQER KSSFSITREAQVNVRMDSFDEDLARPSGLL DEDLARPSGLLAQERKLCRDLVHSNKKEQE R M D E R K 2 2 0 3 0 1 2 1 0 0 3 0 1 1 1 2 0 0 0 0 0 0 19 1 2149.011 Q9Y2W1 Q9Y2W1 573 591 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 1.7027E-12 102.89 2 1 1.1986 1.3916 29.964 3 Plateau 1.2048 1.3542 3.8524 2 0 Median 0.88653 0.80766 NaN 1 0 Median 154360000 64930000 89429000 146940000 61310000 85627000 7421400 3619600 3801800 9425 2128 9648 24994;24995;24996 39196;39197;39198;39199;39200;39201;39202 39197 1955 7 MDSNFGLAGLPGSPK DYNMQVDPVDMESTRMDSNFGLAGLPGSPK MDSNFGLAGLPGSPKKRVRIECKCGTESCR R M D P K K 1 0 1 1 0 0 0 3 0 0 2 1 1 1 2 2 0 0 0 0 0 0 15 0 1489.7235 O43463 O43463 379 393 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2 0.00011112 74.46 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17808000 0 17808000 17808000 0 17808000 0 0 0 9426 1385 9649 24997;24998 39203;39204 39204 1056 2 MDSTEPPYSQK AYTLGVKQLIVGVNKMDSTEPPYSQKRYEE GVNKMDSTEPPYSQKRYEEIVKEVSTYIKK K M D Q K R 0 0 0 1 0 1 1 0 0 0 0 1 1 0 2 2 1 0 1 0 0 0 11 0 1281.5547 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q504Z0;Q53G89;B4E2C5;A0A087WV01;Q9H2I7;Q16577;A9X7H1;Q53HR1 Q6IPT9 155 165 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 no no 2 1.9311E-40 169.41 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10337000 0 10337000 10337000 0 10337000 0 0 0 9427 1658;1790 9650 24999 39205 39205 1437 1 MDSTNADALYVR GRYPEAQSVASDILRMDSTNADALYVRGLC ILRMDSTNADALYVRGLCLYYEDCIEKAVQ R M D V R G 2 1 1 2 0 0 0 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 12 0 1354.6187 B4DKK3;B7Z9W6;Q59EH7;Q99615;K7EPP7;K7ESP1;A8K4T2;K7EIH8 B4DKK3 77 88 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.00039161 65.5 1 2.1766 2.1708 NaN 1 Median 2.1766 2.1708 NaN 1 0 Median NaN NaN NaN 0 0 Median 11631000 4492100 7139300 11631000 4492100 7139300 0 0 0 9428 990 9651 25000 39206 39206 784 1 MDTDLETMDLDQGGEALAPR IREERSRRERVRQSRMDTDLETMDLDQGGE ETMDLDQGGEALAPRQVLDLEDLVFTQGSH R M D P R Q 2 1 0 4 0 1 2 2 0 0 3 0 2 0 1 0 2 0 0 0 0 0 20 0 2176.9616 O75643;A4FU77;Q9H8B9 O75643 387 406 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.3092E-23 134.21 2 1.6763 1.7291 3.2871 2 Median 1.6763 1.7291 3.2871 2 0 Median NaN NaN NaN 0 0 Median 51259000 17135000 34124000 51259000 17135000 34124000 0 0 0 9429 1411 9652 25001;25002 39207;39208;39209;39210;39211;39212 39212 1094;1095 6 MDTPLRR ______________________________ ______________________________ - M D R R S 0 2 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 7 1 887.46472 Q9H6F5;Q6ZW18 Q9H6F5 1 7 CCDC86 Coiled-coil domain-containing protein 86 yes no 2 0.0082819 52.636 1 0.89702 1.0586 NaN 1 Median 0.89702 1.0586 NaN 1 0 Median NaN NaN NaN 0 0 Median 157800000 81179000 76620000 157800000 81179000 76620000 0 0 0 9430 2037 9653 25003 39213 39213 1873 1 MDVAQSELDIYLSR ELMGFSKSVNEARSKMDVAQSELDIYLSRH KMDVAQSELDIYLSRHNTAVSQLTKAKEAL K M D S R H 1 1 0 2 0 1 1 0 0 1 2 0 1 0 0 2 0 0 1 1 0 0 14 0 1638.7923 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 499 512 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.3527E-09 115.14 2 2 1.396 1.3561 18.324 4 Median 1.0265 1.1703 5.0217 2 0 Median 1.8685 1.5896 6.6484 2 0 Median 290710000 137760000 152950000 243140000 122150000 120990000 47567000 15610000 31958000 9431 2070 9654;9655 25004;25005;25006;25007 39214;39215;39216;39217;39218;39219;39220;39221;39222;39223 39217 1904 10 MECPDALAVESK RGKLRAQQRLIKNEKMECPDALAVESKPSR NEKMECPDALAVESKPSRKSVCINPLMSPK K M E S K P 2 0 0 1 1 0 2 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 12 0 1348.6003 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 1304 1315 C10orf12 yes no 2 0.014981 44.639 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9432 630 9656 25008 39224 39224 490 1 MEDLTNPEDIR PLTWQTSHPYILADRMEDLTNPEDIRTNIK LADRMEDLTNPEDIRTNIKCDRKVSLYGYL R M E I R T 0 1 1 2 0 0 2 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 11 0 1331.6027 Q14692 Q14692 261 271 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 6.6723E-66 215.93 2 1 1.1 1.1383 11.605 3 Plateau 1.0534 1.1383 9.0154 2 0 Median 1.1599 0.96231 NaN 1 0 Median 88005000 38515000 49491000 82625000 36061000 46564000 5380900 2453900 2927000 9433 1742 9657 25009;25010;25011 39225;39226;39227;39228 39227 1591 4 MEDQFAALHENPDIIIATPGR KFTGLKTALILGGDRMEDQFAALHENPDII ALHENPDIIIATPGRLVHVAVEMSLKLQSV R M E G R L 3 1 1 2 0 1 2 1 1 3 1 0 1 1 2 0 1 0 0 0 0 0 21 0 2337.1423 Q8TDD1;F8VRX4 Q8TDD1 206 226 DDX54 ATP-dependent RNA helicase DDX54 yes no 3 8.6367E-11 87.319 1 1.1731 1.2846 NaN 1 Median 1.1731 1.2846 NaN 1 0 Median NaN NaN NaN 0 0 Median 32331000 15530000 16801000 32331000 15530000 16801000 0 0 0 9434 1933 9658 25012 39229;39230 39229 1771 2 MEDSVGCLETAEEVK QIATLHAQVADMKKKMEDSVGCLETAEEVK MEDSVGCLETAEEVKRKLQKDLEGLSQRHE K M E V K R 1 0 0 1 1 0 4 1 0 0 1 1 1 0 0 1 1 0 0 2 0 0 15 0 1695.7332 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1373 1387 MYH9 Myosin-9 yes no 2 1.008E-09 107.85 4 2 1.6911 1.3533 8.0051 2 Median NaN NaN NaN 0 0 Median 1.6911 1.3533 8.0051 2 0 Median 18353000 1956600 16397000 13732000 0 13732000 4620800 1956600 2664200 9435 81 9659 25013;25014;25015;25016;25017;25018 39231;39232;39233;39234;39235;39236 39232 61 6 MEEESGAPGVPSGNGAPGPK AGVEAAAEVAATEIKMEEESGAPGVPSGNG GAPGVPSGNGAPGPKGEGERPAQNEKRKEK K M E P K G 2 0 1 0 0 0 3 5 0 0 0 1 1 0 4 2 0 0 0 1 0 0 20 0 1866.8418 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 18 37 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 5.7073E-13 101.45 2 2.1491 2.3036 3.1369 2 Median 2.1491 2.3036 3.1369 2 0 Median NaN NaN NaN 0 0 Median 70708000 23978000 46729000 70708000 23978000 46729000 0 0 0 9436 1599 9660 25019;25020 39237;39238;39239;39240;39241;39242 39238 1381 6 MEEIEGFR SGENRGPILLPYQFRMEEIEGFRYRCRDAM LLPYQFRMEEIEGFRYRCRDAMRSVTKQAI R M E F R Y 0 1 0 0 0 0 3 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 8 0 1009.4539 Q9NY93;Q53HB9;H7C3E9;H7BZN7 Q9NY93 420 427 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.00053116 112.17 3 1 1.073 1.0485 43.159 2 Median 1.2908 1.4227 NaN 1 0 Median 0.89196 0.77276 NaN 1 0 Median 43268000 16582000 26685000 41270000 15584000 25687000 1997100 998570 998530 9437 2081 9661 25021;25022;25023;25024 39243;39244;39245;39246;39247;39248 39246 1918 6 MEEQTEILQNGFNPEEDK ESVFDYSINSVHDEKMEEQTEILQNGFNPE QTEILQNGFNPEEDKCNNCDQELNKKPQDE K M E D K C 0 0 2 1 0 2 5 1 0 1 1 1 1 1 1 0 1 0 0 0 0 0 18 0 2149.9474 Q9H8H0 Q9H8H0 539 556 NOL11 Nucleolar protein 11 yes yes 2 5.8181E-40 159 2 1.1294 1.1283 5.3169 2 Median 1.1294 1.1283 5.3169 2 0 Median NaN NaN NaN 0 0 Median 52998000 24499000 28499000 52998000 24499000 28499000 0 0 0 9438 2042 9662 25025;25026 39249;39250;39251;39252;39253 39249 1879 5 MEETPTEYLQR LKIGFFNQQYAEQLRMEETPTEYLQRGFNL EQLRMEETPTEYLQRGFNLPYQDARKCLGR R M E Q R G 0 1 0 0 0 1 3 0 0 0 1 0 1 0 1 0 2 0 1 0 0 0 11 0 1395.634 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 703 713 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.01831 44.863 1 0.86385 0.75306 NaN 1 Median NaN NaN NaN 0 0 Median 0.86385 0.75306 NaN 1 0 Median 1270700 679180 591470 0 0 0 1270700 679180 591470 9439 1926 9663 25027 39254 39254 1 MEHLAQLR KELLNFYAWQHRESKMEHLAQLRKKFEEDK WQHRESKMEHLAQLRKKFEEDKQRIELLRA K M E L R K 1 1 0 0 0 1 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 996.51748 Q9Y3A4;Q9NSQ0 Q9Y3A4 251 258 RRP7A;RRP7BP Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 2;3 0.0019523 86.833 3 1.1899 1.2487 12.853 3 Median 1.1899 1.2487 12.853 3 0 Median NaN NaN NaN 0 0 Median 88478000 36736000 51742000 88478000 36736000 51742000 0 0 0 9440 2133 9664 25028;25029;25030 39255;39256;39257;39258 39258 1965 4 MEIYRPHK RMTHNLLLNYGLYRKMEIYRPHKANAEEMT NYGLYRKMEIYRPHKANAEEMTKYHSDDYI K M E H K A 0 1 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 8 1 1072.5488 Q6IT96;Q13547;B5BU61;Q5TEE2;B4DSK9;Q92769;B3KUJ5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;H3BM24;E5RK19 Q6IT96 51 58 HDAC1;HDAC2 Histone deacetylase;Histone deacetylase 1;Histone deacetylase 2 no no 2 0.0091806 71.342 1 1.3182 1.4477 NaN 1 Median 1.3182 1.4477 NaN 1 0 Median NaN NaN NaN 0 0 Median 4993100 2186600 2806500 4993100 2186600 2806500 0 0 0 9441 1715;1952 9665 25031 39259 39259 1546 1 MELAGSNTTASSPAR VAAHASLNPALFSMKMELAGSNTTASSPAR MELAGSNTTASSPARARGRPRKTKPGSMQP K M E A R A 3 1 1 0 0 0 1 1 0 0 1 0 1 0 1 3 2 0 0 0 0 0 15 0 1491.6988 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1141 1155 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 1.599E-12 119.39 3 2 2.0357 1.748 11.813 3 Median 1.4762 1.4638 NaN 1 0 Median 2.0523 1.789 3.28 2 0 Median 14459000 5834500 8625000 12021000 4925200 7096200 2438100 909330 1528700 9442 1260 9666;9667 25032;25033;25034;25035;25036 39260;39261;39262;39263;39264 39262 964 5 MELFSQLFIQAVR SGPGQRVCVIDEIGKMELFSQLFIQAVRQT GKMELFSQLFIQAVRQTLSTPGTIILGTIP K M E V R Q 1 1 0 0 0 2 1 0 0 1 2 0 1 2 0 1 0 0 0 1 0 0 13 0 1580.8385 Q5TDE9;Q5TDF0;Q9BSD7 Q5TDE9 118 130 C1orf57;NTPCR Cancer-related nucleoside-triphosphatase yes no 2 0.00022534 79.974 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5354100 0 5354100 5354100 0 5354100 0 0 0 9443 1826 9668 25037;25038 39265;39266 39265 1681 2 MEQANPLRPDGESK ______________________________ ______________________________ - M E S K G 1 1 1 1 0 1 2 1 0 0 1 1 1 0 2 1 0 0 0 0 0 0 14 1 1570.741 Q9BU64;Q53SX2 Q9BU64 1 14 CENPO;MGC11266 Centromere protein O yes no 2 5.6905E-05 65.395 2 0.91616 1.0167 NaN 1 Median 0.91616 1.0167 NaN 1 0 Median NaN NaN NaN 0 0 Median 15229000 10668000 4561100 15229000 10668000 4561100 0 0 0 9444 2003 9669 25039;25040 39267;39268 39267 1845 2 METASELGREEEDDVDLELR FDSYAQFEESMIAAKMETASELGREEEDDV ELGREEEDDVDLELRLARFEQLISRRPLLL K M E L R L 1 2 0 3 0 0 6 1 0 0 3 0 1 0 0 1 1 0 0 1 0 0 20 1 2335.0485 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 162 181 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 3 2.8093E-05 43.164 1 1.4726 1.4821 NaN 1 Median 1.4726 1.4821 NaN 1 0 Median NaN NaN NaN 0 0 Median 9880800 2716600 7164200 9880800 2716600 7164200 0 0 0 9445 1838 9670 25041 39269 39269 1694 1 METEADAPSPAPSLGER NQEEKPEKNSRIGEKMETEADAPSPAPSLG TEADAPSPAPSLGERLEPRKIPLEDEVPGV K M E E R L 3 1 0 1 0 0 3 1 0 0 1 0 1 0 3 2 1 0 0 0 0 0 17 0 1756.7938 Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4 Q12873 1593 1609 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.00021372 64.65 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9446 1701 9671 25042;25043;25044 39270;39271;39272 39271 1534 3 MEVKPPPGRPQPDSGR ______________________________ EVKPPPGRPQPDSGRRRRRRGEEGHDPKEP - M E G R R 0 2 0 1 0 1 1 2 0 0 0 1 1 0 5 1 0 0 0 1 0 0 16 2 1746.8835 P51991;B4E036 P51991 1 16 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 3 0.00045885 43.297 1 1.6572 1.8173 NaN 1 Median 1.6572 1.8173 NaN 1 0 Median NaN NaN NaN 0 0 Median 21317000 7535000 13782000 21317000 7535000 13782000 0 0 0 9447 1598 9672 25045 39273 39273 1380 1 MEVQEQEEDISSLIR DNSMNVDQDGDPSDRMEVQEQEEDISSLIR MEVQEQEEDISSLIRSCKFSMKMKMIDSAR R M E I R S 0 1 0 1 0 2 4 0 0 2 1 0 1 0 0 2 0 0 0 1 0 0 15 0 1804.8513 P78527 P78527 3218 3232 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 7.1865E-16 134.49 3 0.66945 0.70024 NaN 1 Median 0.66945 0.70024 NaN 1 0 Median NaN NaN NaN 0 0 Median 19234000 11420000 7814000 19234000 11420000 7814000 0 0 0 9448 1665 9673 25046;25047;25048 39274;39275;39276;39277 39274 1457 4 MEVSPLQPVNENMQVNK ______________________________ VSPLQPVNENMQVNKIKKNEDAKKRLSVER - M E N K I 0 0 3 0 0 2 2 0 0 0 1 1 2 0 2 1 0 0 0 3 0 0 17 0 1955.9445 P11388 P11388 1 17 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00021495 42.629 1 0.98344 1.0294 NaN 1 Median 0.98344 1.0294 NaN 1 0 Median NaN NaN NaN 0 0 Median 12035000 6289900 5744700 12035000 6289900 5744700 0 0 0 9449 1471 9674 25049 39278 39278 1205;1206 1 MFAPTK RSGQGAFGNMCRGGRMFAPTKTWRRWHRRV FGNMCRGGRMFAPTKTWRRWHRRVNTTQKR R M F T K T 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 6 0 693.35198 P36578;Q59GY2;B4DMJ6;H3BM89;B4DFI6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 101 106 RPL4 60S ribosomal protein L4 yes no 2 0.035212 116 1 0.5742 0.63574 NaN 1 Median 0.5742 0.63574 NaN 1 0 Median NaN NaN NaN 0 0 Median 45901000 29414000 16487000 45901000 29414000 16487000 0 0 0 9450 1548 9675 25050 39279 39279 1 MFASLFPHNPQFIGR ILNNFTTRLGHSIGRMFASLFPHNPQFIGR MFASLFPHNPQFIGRQVATFHNQRDYIFFR R M F G R Q 1 1 1 0 0 1 0 1 1 1 1 0 1 3 2 1 0 0 0 0 0 0 15 0 1760.8821 Q9H9Y2 Q9H9Y2 262 276 RPF1 Ribosome production factor 1 yes yes 3 0.00010722 57.804 1 2 1.4039 1.3801 46.935 2 Median 1.7861 1.9233 NaN 1 0 Median 1.1035 0.99033 NaN 1 0 Median 28694000 10702000 17992000 25831000 9786800 16044000 2863100 915550 1947500 9451 2048 9676;9677 25051;25052;25053 39280;39281;39282;39283;39284 39281 1880 5 MFEIVFEDPK IQGGTSHHLGQNFSKMFEIVFEDPKIPGEK QNFSKMFEIVFEDPKIPGEKQFAYQNSWGL K M F P K I 0 0 0 1 0 0 2 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 10 0 1253.6002 P07814;B4DP50 P07814 1251 1260 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.017847 44.863 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7901400 0 7901400 7901400 0 7901400 0 0 0 9452 1454 9678 25054 39285 39285 1161 1 MFGGPGTASR ______________________________ SSYRRMFGGPGTASRPSSSRSYVTTSTRTY R M F S R P 1 1 0 0 0 0 0 3 0 0 0 0 1 1 1 1 1 0 0 0 0 0 10 0 979.45455 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;A0A1B0GUA0;A0A1B0GTT5;A0A1B0GVG8;A0A0S2Z4T0 V9HWE1 14 23 HEL113;VIM Vimentin yes no 2 0.00010311 93.649 3 1.2801 1.2643 5.5072 3 Median 1.2801 1.2643 5.5072 3 0 Median NaN NaN NaN 0 0 Median 99421000 42482000 56939000 99421000 42482000 56939000 0 0 0 9453 1457 9679 25055;25056;25057 39286;39287;39288 39288 1176 2 MFILSDGEGK ______________________________ ______________________________ - M F G K N 0 0 0 1 0 0 1 2 0 1 1 1 1 1 0 1 0 0 0 0 0 0 10 0 1095.527 B5MC59;A4D105;P35244 B5MC59 1 10 RPA3 Replication protein A 14 kDa subunit yes no 2 0.0064726 54.416 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3715500 3715500 0 3715500 3715500 0 0 0 0 9454 661 9680 25058 39289 39289 515 1 MFLQYYLNEQGDR ______________________________ ______________________________ - M F D R V 0 1 1 1 0 2 1 1 0 0 2 0 1 1 0 0 0 0 2 0 0 0 13 0 1675.7664 H0YM60;Q9NPE3 H0YM60 1 13 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes no 2 3.6356E-06 103.22 2 2 0.75123 0.71604 43.432 4 Median 0.78458 0.81953 0.77136 2 0 Median 0.52065 0.45321 46.364 2 0 Median 53553000 31937000 21615000 47814000 28236000 19578000 5738700 3701000 2037700 9455 1296 9681;9682 25059;25060;25061;25062 39290;39291;39292;39293;39294;39295 39290 987 6 MFQLPVNNLGSLR ______________________________ ______________________________ - M F L R K 0 1 2 0 0 1 0 1 0 0 3 0 1 1 1 1 0 0 0 1 0 0 13 0 1487.7919 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 1 13 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00099527 57.347 2 0.83553 0.84067 9.9353 2 Median 0.83553 0.84067 9.9353 2 0 Median NaN NaN NaN 0 0 Median 14775000 7365300 7409500 14775000 7365300 7409500 0 0 0 9456 878 9683 25063;25064 39296;39297;39298;39299 39297 686 4 MFVGQVPR GTLDHPDQPDLDAIKMFVGQVPRTWSEKDL PDLDAIKMFVGQVPRTWSEKDLRELFEQYG K M F P R T 0 1 0 0 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 2 0 0 8 0 932.49021 G5EA30;Q92879;E9PQK4;E9PSH0;E9PKU1;E9PKA1;F5H4Y5;F5H0D8 G5EA30 45 52 CELF1 CUGBP Elav-like family member 1 yes no 2 0.018276 58.167 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9457 1278 9684 25065 39300 39300 978 1 MFVLDEADEMLSR FDMLNRRYLSPKYIKMFVLDEADEMLSRGF IKMFVLDEADEMLSRGFKDQIYDIFQKLNS K M F S R G 1 1 0 2 0 0 2 0 0 0 2 0 2 1 0 1 0 0 0 1 0 0 13 0 1554.7058 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;B4DNH2;J3QR64;J3KSZ0;E7EQG2;Q14240;J3QLN6;J3KTN0;B4DKP9;Q9NZE6;B4DJX6 A8K7F6 178 190 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 8.3869E-30 147.74 5 1 5.2558 5.8186 133.21 3 Median 5.2808 5.965 3.5143 2 0 Median 0.67181 0.59401 NaN 1 0 Median 144810000 16358000 128450000 143690000 15653000 128040000 1113700 705100 408580 9458 770 9685;9686 25066;25067;25068;25069;25070;25071 39301;39302;39303;39304;39305;39306;39307;39308;39309 39306 600;601 9 MGADQDTIPR LDGMIRQLQQQQDQRMGADQDTIPRGLSNG QQDQRMGADQDTIPRGLSNGEETPRRGFRR R M G P R G 1 1 0 2 0 1 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 0 10 0 1102.5077 Q9NSI6;Q5R2U6;H0Y463;H7BZR9;Q5R2U9;H0Y500;Q5R2U8;H0Y5I9 Q9NSI6 670 679 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.00024629 85.731 2 0.91256 0.92581 5.3294 2 Median 0.91256 0.92581 5.3294 2 0 Median NaN NaN NaN 0 0 Median 17762000 8911000 8851000 17762000 8911000 8851000 0 0 0 9459 2068 9687 25072;25073 39310;39311 39310 1895 2 MGAGMGFGLER RMGQTMERIGSGVERMGAGMGFGLERMAAP GVERMGAGMGFGLERMAAPIDRVGQTIERM R M G E R M 1 1 0 0 0 0 1 4 0 0 1 0 2 1 0 0 0 0 0 0 0 0 11 0 1124.5107 M0QZM1;P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7 P52272 486 496 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.00031317 90.108 2 3.2114 3.5509 0.32119 2 Median 3.2114 3.5509 0.32119 2 0 Median NaN NaN NaN 0 0 Median 97028000 26563000 70465000 97028000 26563000 70465000 0 0 0 9460 1599;1354 9688 25074;25075 39312;39313;39314;39315 39314 1016;1017 4 MGANNLER RMGPVMDRMATGLERMGANNLERMGLERMG MATGLERMGANNLERMGLERMGANSLERMG R M G E R M 1 1 2 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 8 0 903.42325 M0QZM1;P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7 P52272 558 565 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.012778 73.26 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9461 1599;1354 9689 25076 39316 39316 1 MGANSLER ERMGANNLERMGLERMGANSLERMGLERMG ERMGLERMGANSLERMGLERMGANSLERMG R M G E R M 1 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 8 0 876.41235 M0QZM1;P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96 P52272 571 578 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.022432 57.177 1 1.1915 1.0062 NaN 1 Median NaN NaN NaN 0 0 Median 1.1915 1.0062 NaN 1 0 Median 3003400 1356400 1646900 0 0 0 3003400 1356400 1646900 9462 1599;1354 9690 25077 39317 39317 1 MGESDDSILR NGQFKTYAICGAIRRMGESDDSILRLAKAD GAIRRMGESDDSILRLAKADGIVSK_____ R M G L R L 0 1 0 2 0 0 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 0 10 0 1121.5023 Q8WVC2;Q6FGH5;P63220 Q8WVC2 62 71 RPS21 40S ribosomal protein S21 yes no 2 3.3861E-06 102.07 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52898000 0 52898000 52898000 0 52898000 0 0 0 9463 1655 9691 25078;25079;25080 39318;39319;39320 39320 1433 3 MGFTEVTPVTGASLR AALRVLIGENEKAERMGFTEVTPVTGASLR MGFTEVTPVTGASLRRTMLLLSRSPEAQPK R M G L R R 1 1 0 0 0 0 1 2 0 0 1 0 1 1 1 1 3 0 0 2 0 0 15 0 1564.7919 A0A024DAK3;Q59EC0;P55265;B7Z8Y3 A0A024DAK3 802 816 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.00077683 47.288 1 1.1013 1.1519 NaN 1 Median 1.1013 1.1519 NaN 1 0 Median NaN NaN NaN 0 0 Median 22621000 11515000 11105000 22621000 11515000 11105000 0 0 0 9464 5 9692 25081 39321 39321 5 1 MGGEEAEIR HVALLSVFQAWDDARMGGEEAEIRFCEHKR AWDDARMGGEEAEIRFCEHKRLNMATLRMT R M G I R F 1 1 0 0 0 0 3 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 9 0 990.44404 Q08211;B3KU66 Q08211 930 938 DHX9 ATP-dependent RNA helicase A yes no 2 0.028974 46.447 1 1.7333 1.5042 NaN 1 Median NaN NaN NaN 0 0 Median 1.7333 1.5042 NaN 1 0 Median 2149800 753720 1396100 0 0 0 2149800 753720 1396100 9465 1691 9693 25082 39322 39322 1 MGGGSIEVSVPR DQADFRGVRGDFNSRMGGGSIEVSVPRFAV NSRMGGGSIEVSVPRFAVGIVIGRNGEMIK R M G P R F 0 1 0 0 0 0 1 3 0 1 0 0 1 0 1 2 0 0 0 2 0 0 12 0 1187.5969 A0A024R8A7;Q96I24 A0A024R8A7 251 262 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 2 9.6566E-09 109.42 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13965000 0 13965000 13965000 0 13965000 0 0 0 9466 245 9694 25083;25084 39323;39324;39325 39323 182 3 MGHAGAIIAGGK VVSFIAGLTAPPGRRMGHAGAIIAGGKGGA GRRMGHAGAIIAGGKGGAKEKISALQSAGV R M G G K G 3 0 0 0 0 0 0 4 1 2 0 1 1 0 0 0 0 0 0 0 0 0 12 0 1081.5702 Q6IAL5;B2R8A1;A8K4W7;P53597 Q6IAL5 284 295 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 2 9.1949E-06 103.87 1 2.312 2.3282 NaN 1 Median 2.312 2.3282 NaN 1 0 Median NaN NaN NaN 0 0 Median 9994400 2140200 7854200 9994400 2140200 7854200 0 0 0 9467 743 9695 25085 39326 39326 580 1 MGHSAPLTNIR IFDGPTGEGRLLRFRMGHSAPLTNIRYYGQ LRFRMGHSAPLTNIRYYGQNGQQILSASQD R M G I R Y 1 1 1 0 0 0 0 1 1 1 1 0 1 0 1 1 1 0 0 0 0 0 11 0 1195.6132 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 320 330 WDR36 WD repeat-containing protein 36 yes no 2;3 3.7789E-10 125.7 4 1.4184 1.5319 10.479 4 Median 1.4184 1.5319 10.479 4 0 Median NaN NaN NaN 0 0 Median 264820000 106490000 158340000 264820000 106490000 158340000 0 0 0 9468 486 9696 25086;25087;25088;25089 39327;39328;39329;39330;39331 39328 334 5 MGITEYNNQCR IDKTLGIRGPEDVAKMGITEYNNQCRAIVM DVAKMGITEYNNQCRAIVMRYSAEWKSTVS K M G C R A 0 1 2 0 1 1 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 11 0 1384.5864 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q5TCD1 Q59G75 128 138 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 1.6806E-08 110.87 2 1.7956 1.7837 NaN 1 Median 1.7956 1.7837 NaN 1 0 Median NaN NaN NaN 0 0 Median 9136000 1864100 7271900 9136000 1864100 7271900 0 0 0 9469 1561 9697 25090;25091 39332;39333 39332 1313 2 MGIYYIPVLGPAPR YPNSGMLLTANETPKMGIYYIPVLGPAPRW KMGIYYIPVLGPAPRWCSFLDNLTEELEEN K M G P R W 1 1 0 0 0 0 0 2 0 2 1 0 1 0 3 0 0 0 2 1 0 0 14 0 1545.8378 Q9BSC4;B4DS83 Q9BSC4 336 349 NOL10 Nucleolar protein 10 yes no 2 1.653E-06 102.61 2 3 1.0892 1.3782 24.037 4 Linear 1.1451 1.267 21.831 2 0 Median 1.0892 0.89627 7.6439 2 0 Median 125810000 59021000 66791000 98114000 43898000 54216000 27697000 15122000 12575000 9470 2000 9698;9699 25092;25093;25094;25095;25096 39334;39335;39336;39337;39338;39339;39340 39335 1839 7 MGLAISLVATEK QNYVHRIGRVGRAERMGLAISLVATEKEKV AERMGLAISLVATEKEKVWYHVCSSRGKGC R M G E K E 2 0 0 0 0 0 1 1 0 1 2 1 1 0 0 1 1 0 0 1 0 0 12 0 1231.6846 F1T0B3;A0A087X2G1;A3RJH1;Q92499 F1T0B3 531 542 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0020165 54.198 1 1.5761 1.6284 NaN 1 Median 1.5761 1.6284 NaN 1 0 Median NaN NaN NaN 0 0 Median 24989000 8002500 16987000 24989000 8002500 16987000 0 0 0 9471 452 9700 25097 39341 39341 317 1 MGLAMGGGGGASFDR MGPAMGPALGAGIERMGLAMGGGGGASFDR MGLAMGGGGGASFDRAIEMERGNFGGSFAG R M G D R A 2 1 0 1 0 0 0 6 0 0 1 0 2 1 0 1 0 0 0 0 0 0 15 0 1382.6071 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96 P52272 607 621 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 2 3.7582E-07 106.26 2 3.0417 3.3549 1.9768 2 Median 3.0417 3.3549 1.9768 2 0 Median NaN NaN NaN 0 0 Median 127970000 32766000 95208000 127970000 32766000 95208000 0 0 0 9472 1599 9701 25098;25099 39342;39343;39344;39345 39344 1382;1383 4 MGLIQTADQLR SVDIKKVLLEMRKFRMGLIQTADQLRFSYL RKFRMGLIQTADQLRFSYLAVIEGAKFIMG R M G L R F 1 1 0 1 0 2 0 1 0 1 2 0 1 0 0 0 1 0 0 0 0 0 11 0 1244.6547 A8K3M3;P18031;B4DSN5 A8K3M3 258 268 PTPN1 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 1 yes no 2 0.00012705 90.108 1 2.4581 2.4451 NaN 1 Median 2.4581 2.4451 NaN 1 0 Median NaN NaN NaN 0 0 Median 8263000 3057000 5206000 8263000 3057000 5206000 0 0 0 9473 724 9702 25100 39346 39346 560 1 MGLVDQLVEPLGPGLKPPEER MMLTGRSIRADRAKKMGLVDQLVEPLGPGL LVEPLGPGLKPPEERTIEYLEEVAITFAKG K M G E R T 0 1 0 1 0 1 3 3 0 0 4 1 1 0 4 0 0 0 0 2 0 0 21 1 2273.209 E9KL44;P40939;B4DRH6;B4DDZ5 E9KL44 215 235 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 3 1.3137E-09 85.231 3 1 1.4726 1.6989 53.801 3 Plateau 1.4481 1.6574 3.8466 2 0 Median 0.77874 0.65348 NaN 1 0 Median 52249000 19162000 33088000 48916000 17214000 31701000 3333600 1947400 1386300 9474 1228 9703 25101;25102;25103;25104 39347;39348;39349;39350;39351;39352 39347 943 6 MGPAMGPALGAGIER ERMGLERMGANSLERMGPAMGPALGAGIER MGPAMGPALGAGIERMGLAMGGGGGASFDR R M G E R M 3 1 0 0 0 0 1 4 0 1 1 0 2 0 2 0 0 0 0 0 0 0 15 0 1426.7061 M0QZM1;P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96 P52272 592 606 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 2 2.412E-07 108.56 1 2.5835 2.9232 NaN 1 Median 2.5835 2.9232 NaN 1 0 Median NaN NaN NaN 0 0 Median 104310000 23293000 81021000 104310000 23293000 81021000 0 0 0 9475 1599;1354 9704 25105 39353 39353 1018;1019 1 MGPGAASGGERPNLK VEQAFMTMAAEIKKRMGPGAASGGERPNLK MGPGAASGGERPNLKIDSTPVKPAGGGCC_ R M G L K I 2 1 1 0 0 0 1 4 0 0 1 1 1 0 2 1 0 0 0 0 0 0 15 1 1440.7143 E9PLD0;Q9H0U4;Q6FIG4 E9PLD0 141 155 RAB1B Ras-related protein Rab-1B yes no 2 4.9307E-22 143.24 2 2.8265 3.147 55.716 2 Median 2.8265 3.147 55.716 2 0 Median NaN NaN NaN 0 0 Median 14584000 4192400 10391000 14584000 4192400 10391000 0 0 0 9476 1246 9705 25106;25107 39354;39355 39355 955 2 MGPLGLDHMASSIER DRMGSVERMGSGIERMGPLGLDHMASSIER MGPLGLDHMASSIERMGQTMERIGSGVERM R M G E R M 1 1 0 1 0 0 1 2 1 1 2 0 2 0 1 2 0 0 0 0 0 0 15 0 1612.7701 M0QZM1;P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7 P52272 457 471 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 3 9.6237E-05 75.316 2 1 3.1581 3.5624 55.255 3 Median 3.1935 3.6315 2.716 2 0 Median 1.6045 1.3954 NaN 1 0 Median 183210000 45200000 138010000 182250000 44890000 137360000 965010 309960 655050 9477 1599;1354 9706;9707 25108;25109;25110 39356;39357;39358;39359;39360 39357 1020;1021 5 MGQAPSQSLLPPAQDQPR QSRMTSERAPSPSSRMGQAPSQSLLPPAQD APSQSLLPPAQDQPRSPVPSAFSDQSRCLI R M G P R S 2 1 0 1 0 4 0 1 0 0 2 0 1 0 4 2 0 0 0 0 0 0 18 0 1919.9523 A0A140VK53;Q9UQ35;O60382;I3L3Q8 A0A140VK53 2431 2448 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.0012147 48.467 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2831000 0 2831000 2831000 0 2831000 0 0 0 9478 619 9708 25111;25112 39361;39362 39361 474 2 MGSSLVIEISEEEVNK SGTMTGGGSKVMKGRMGSSLVIEISEEEVN GSSLVIEISEEEVNKMESQLQNDSKKAMQI R M G N K M 0 0 1 0 0 0 4 1 0 2 1 1 1 0 0 3 0 0 0 2 0 0 16 0 1762.8659 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 763 778 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 6.6071E-34 152.47 2 1 0.99065 1.1069 4.7733 3 Plateau 0.97479 1.1016 2.5005 2 0 Median 1.2712 1.0202 NaN 1 0 Median 263290000 131650000 131630000 244990000 123570000 121420000 18294000 8084100 10210000 9479 2070 9709 25113;25114;25115 39363;39364;39365;39366;39367;39368;39369 39365 1905 7 MGVFAQADGSAYIEQGNTK VDGRRAGELRKIQARMGVFAQADGSAYIEQ AQADGSAYIEQGNTKALAVVYGPHEIRGSR R M G T K A 3 0 1 1 0 2 1 3 0 1 0 1 1 1 0 1 1 0 1 1 0 0 19 0 1985.9153 Q9NPD3;E9PPI9 Q9NPD3 29 47 EXOSC4 Exosome complex component RRP41 yes no 2 3.6871E-07 77.527 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5658700 5658700 0 5658700 5658700 0 0 0 0 9480 2056 9710 25116;25117 39370;39371;39372 39371 1885 3 MGVPYCIIK DPIELVVFLPALCRKMGVPYCIIKGKARLG PALCRKMGVPYCIIKGKARLGRLVHRKTCT K M G I K G 0 0 0 0 1 0 0 1 0 2 0 1 1 0 1 0 0 0 1 1 0 0 9 0 1079.5508 P62424;Q9BY74;Q5T8U2 P62424 177 185 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 0.00083155 81.784 3 2 1.1307 1.253 53.456 5 Median 1.1482 1.2758 5.5744 3 0 Median 0.66415 0.52729 38.863 2 0 Median 181790000 82565000 99226000 170550000 75618000 94934000 11238000 6946700 4291700 9481 1648 9711;9712 25118;25119;25120;25121;25122 39373;39374;39375;39376;39377;39378 39373 1428 6 MHALSLK EKELSDSVTLSSSDRMHALSLKIVLLGKIY VTLSSSDRMHALSLKIVLLGKIYAGTPRFF R M H L K I 1 0 0 0 0 0 0 0 1 0 2 1 1 0 0 1 0 0 0 0 0 0 7 0 798.44219 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1203 1209 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.02733 44.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8924900 0 8924900 8924900 0 8924900 0 0 0 9482 39 9713 25123 39379 39379 22 1 MHNQIPQVTSDGK ADGLLSQGYSDFINRMHNQIPQVTSDGKRL NRMHNQIPQVTSDGKRLQVIVCSATLHSFD R M H G K R 0 0 1 1 0 2 0 1 1 1 0 1 1 0 1 1 1 0 0 1 0 0 13 0 1453.6984 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 306 318 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 1.9445E-30 166.14 2 1.9025 1.9158 6.4214 2 Median 1.9025 1.9158 6.4214 2 0 Median NaN NaN NaN 0 0 Median 44789000 15862000 28927000 44789000 15862000 28927000 0 0 0 9483 452 9714 25124;25125 39380;39381;39382;39383 39383 318 4 MHPQSLAEEEIK ______________________________ ______________________________ - M H I K T 1 0 0 0 0 1 3 0 1 1 1 1 1 0 1 1 0 0 0 0 0 0 12 0 1410.6813 A0A087WVZ6;A6H8Y8;Q2HXV5;Q569J9 A0A087WVZ6 1 12 ZMYND8 yes no 2 0.00027529 74.237 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14337000 4755300 9581600 14337000 4755300 9581600 0 0 0 9484 422 9715;9716 25126;25127;25128 39384;39385;39386;39387 39387 309 4 MIAGANFYIVGR LYAGPTEVQWHCRSRMIAGANFYIVGRDPA RSRMIAGANFYIVGRDPAGMPHPETKKDLY R M I G R D 2 1 1 0 0 0 0 2 0 2 0 0 1 1 0 0 0 0 1 1 0 0 12 0 1310.6805 Q5TB52;B4DWB5;O95340;Q9UIR2 Q5TB52 501 512 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 6.4074E-09 112.41 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17763000 0 17763000 17763000 0 17763000 0 0 0 9485 1044 9717 25129 39388 39388 818 1 MIAGQVLDINLAAEPK NERNARAAVAGEDGRMIAGQVLDINLAAEP IAGQVLDINLAAEPKVNRGKAGVKRSAAEM R M I P K V 3 0 1 1 0 1 1 1 0 2 2 1 1 0 1 0 0 0 0 1 0 0 16 0 1681.9073 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V555;G3V575;D3DPI2;B4DMJ1;B4DSU6;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V5X6;G3V3K6;G3V251 G3V4W0 74 89 HNRNPC;hCG_1641229 Heterogeneous nuclear ribonucleoproteins C1/C2 no no 2 8.6625E-45 165.58 4 7 0.7804 0.63237 54.49 9 Median 1.1018 1.2045 41.826 4 0 Median 0.66439 0.54167 19.74 5 0 Median 1081000000 511330000 569660000 867200000 371030000 496160000 213790000 140300000 73492000 9486 837;781 9718;9719 25130;25131;25132;25133;25134;25135;25136;25137;25138;25139;25140 39389;39390;39391;39392;39393;39394;39395;39396;39397;39398;39399;39400;39401;39402;39403;39404;39405;39406;39407;39408;39409 39395 613 21 MIAILTENYGGK RPVIVHRAILGSVERMIAILTENYGGKWPF VERMIAILTENYGGKWPFWLSPRQVMVVPV R M I G K W 1 0 1 0 0 0 1 2 0 2 1 1 1 0 0 0 1 0 1 0 0 0 12 0 1308.6748 Q5M7Z9;B2RDX5;Q53GX7;P26639;B4DKZ9;B3KTN2 Q5M7Z9 600 611 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.00048167 72.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9487 892 9720 25141 39410 39410 701 1 MIASDSHRPEVK REKSTFREESPLRIKMIASDSHRPEVKLKM RIKMIASDSHRPEVKLKMAPVPLDDSNRPA K M I V K L 1 1 0 1 0 0 1 0 1 1 0 1 1 0 1 2 0 0 0 1 0 0 12 1 1368.682 Q9NYF8;Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 537 548 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2;3 1.4417E-05 104.79 4 1.1579 1.3216 3.9167 4 Median 1.1579 1.3216 3.9167 4 0 Median NaN NaN NaN 0 0 Median 114310000 52259000 62053000 114310000 52259000 62053000 0 0 0 9488 2083 9721 25142;25143;25144;25145 39411;39412;39413;39414;39415 39413 1921 5 MIDMPVER KDHIMEIFSTYGKIKMIDMPVERMHPHLSK STYGKIKMIDMPVERMHPHLSKGYAYVEFE K M I E R M 0 1 0 1 0 0 1 0 0 1 0 0 2 0 1 0 0 0 0 1 0 0 8 0 989.46742 H3BV80;H3BMS0;H3BMM9;H3BTC0;D3DU92;Q15287;H3BPG5;A0A024R9P1 H3BV80 95 102 RNPS1;hCG_2026745 RNA-binding protein with serine-rich domain 1 yes no 2 0.037967 55.531 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9489 1192 9722 25146 39416 39416 906;907 1 MIELLADNINLGDPSSMLK KSTKPGKLIGVANQKMIELLADNINLGDPS LADNINLGDPSSMLKMVEDLISVGEEESFN K M I L K M 1 0 2 2 0 0 1 1 0 2 4 1 2 0 1 2 0 0 0 0 0 0 19 0 2073.0486 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1 B2RWN5 664 682 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 8.246E-12 102.73 2 3.0427 3.041 0.54487 2 Median 3.0427 3.041 0.54487 2 0 Median NaN NaN NaN 0 0 Median 46988000 9670700 37318000 46988000 9670700 37318000 0 0 0 9490 897 9723 25147;25148 39417;39418;39419 39417 711;712 3 MIEVQDELLR KNAKMISDIEKKRQRMIEVQDELLRLEPQL KKRQRMIEVQDELLRLEPQLKQLQTKYDEL R M I L R L 0 1 0 1 0 1 2 0 0 1 2 0 1 0 0 0 0 0 0 1 0 0 10 0 1244.6435 Q71F23;A8K8D2 Q71F23 320 329 CENPU Centromere protein U yes no 2 0.039353 40.352 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9491 1866 9724 25149 39420 39420 1721 1 MIEYDPER AVKRQLRVRTIYESKMIEYDPERRLGIFWV RTIYESKMIEYDPERRLGIFWVSCEAGTYI K M I E R R 0 1 0 1 0 0 2 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 8 0 1051.4644 O60832;C9IYT0;U5UA77;H7C0M1;H7BZF2 O60832 204 211 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.046504 42.109 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9492 1398 9725 25150 39421 39421 1075 1 MIEYDPERR AVKRQLRVRTIYESKMIEYDPERRLGIFWV TIYESKMIEYDPERRLGIFWVSCEAGTYIR K M I R R L 0 2 0 1 0 0 2 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 9 1 1207.5656 O60832;C9IYT0;U5UA77;H7C0M1;H7BZF2 O60832 204 212 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 3.1204E-05 103.83 2 1.0501 1.1366 NaN 1 Median 1.0501 1.1366 NaN 1 0 Median NaN NaN NaN 0 0 Median 36327000 23174000 13153000 36327000 23174000 13153000 0 0 0 9493 1398 9726 25151;25152 39422;39423;39424 39424 1075 3 MIFDVESMK GTKSKLPKPVQDLIKMIFDVESMKKAMVEY VQDLIKMIFDVESMKKAMVEYEIDLQKMPL K M I M K K 0 0 0 1 0 0 1 0 0 1 0 1 2 1 0 1 0 0 0 1 0 0 9 0 1098.509 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 675 683 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.0195 53.968 2 1.1693 1.1939 8.6009 2 Median 1.1693 1.1939 8.6009 2 0 Median NaN NaN NaN 0 0 Median 25108000 9870600 15237000 25108000 9870600 15237000 0 0 0 9494 139 9727 25153;25154 39425;39426 39426 124;125 2 MIFDVESMKK GTKSKLPKPVQDLIKMIFDVESMKKAMVEY QDLIKMIFDVESMKKAMVEYEIDLQKMPLG K M I K K A 0 0 0 1 0 0 1 0 0 1 0 2 2 1 0 1 0 0 0 1 0 0 10 1 1226.6039 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 675 684 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.4792E-05 95.502 2 1.2794 1.479 NaN 1 Median 1.2794 1.479 NaN 1 0 Median NaN NaN NaN 0 0 Median 48944000 28864000 20080000 48944000 28864000 20080000 0 0 0 9495 139 9728 25155;25156 39427;39428;39429 39427 124;125 3 MIICSEEEQNMDLTK RKSLSNPTPDYCHDKMIICSEEEQNMDLTK MIICSEEEQNMDLTKSHTVVIGFGPSELQE K M I T K S 0 0 1 1 1 1 3 0 0 2 1 1 2 0 0 1 1 0 0 0 0 0 15 0 1839.8053 Q8NG31;E9PPJ1 Q8NG31 778 792 CASC5 Protein CASC5 yes no 2 0.032489 40.715 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9496 1928 9729 25157 39430 39430 1762;1763 1 MILIQDGSQNTNVDK GGETIKQLQERAGVKMILIQDGSQNTNVDK MILIQDGSQNTNVDKPLRIIGDPYKVQQAC K M I D K P 0 0 2 2 0 2 0 1 0 2 1 1 1 0 0 1 1 0 0 1 0 0 15 0 1674.8247 A0A087WTP3;Q92945;M0R0I5;B4DV73;M0QYH3 A0A087WTP3 267 281 KHSRP Far upstream element-binding protein 2 yes no 2 0.00072468 68.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9497 403 9730 25158 39431 39431 293 1 MINTDLSR KAASLKSNYNLPMHKMINTDLSRILKSPEI YNLPMHKMINTDLSRILKSPEIQRALRAPR K M I S R I 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 8 0 948.46987 P36578;Q59GY2;B4DMJ6;H3BM89;B4DMJ2 P36578 284 291 RPL4 60S ribosomal protein L4 yes no 2 0.00046275 124.08 5 4 1.1794 1.0127 36.295 9 Median 1.1794 1.3719 36.934 5 0 Median 0.96879 0.78097 31.116 4 0 Median 1107000000 525520000 581510000 1055800000 499130000 556650000 51255000 26392000 24864000 9498 1548 9731;9732 25159;25160;25161;25162;25163;25164;25165;25166;25167 39432;39433;39434;39435;39436;39437;39438;39439;39440;39441;39442;39443;39444;39445;39446 39434 1304 15 MIVDPVEPHGEMK LSKKLIYFQLHRALKMIVDPVEPHGEMKFQ LKMIVDPVEPHGEMKFQWDLNAWTKSAEAF K M I M K F 0 0 0 1 0 0 2 1 1 1 0 1 2 0 2 0 0 0 0 2 0 0 13 0 1480.7054 B2R8R5;Q13263;M0R0K9 B2R8R5 378 390 TRIM28 Transcription intermediary factor 1-beta yes no 2 9.0249E-05 83.869 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8968500 0 8968500 8968500 0 8968500 0 0 0 9499 862 9733 25168;25169;25170 39447;39448;39449 39449 671;672 3 MKLDYILGLK LLRRLVRIGVLDEGKMKLDYILGLKIEDFL LDEGKMKLDYILGLKIEDFLERRLQTQVFK K M K L K I 0 0 0 1 0 0 0 1 0 1 3 2 1 0 0 0 0 0 1 0 0 0 10 1 1192.689 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 92 101 RPS9 40S ribosomal protein S9 yes no 2 0.00085564 77.662 1 1 0.82244 0.82574 96.106 2 Median 1.38 1.6292 NaN 1 0 Median 0.49014 0.41851 NaN 1 0 Median 68994000 35537000 33457000 53823000 25070000 28753000 15171000 10467000 4704100 9500 157 9734 25171;25172 39450;39451 39451 133 2 MKLPEHPEGGEPEDDEAPAK KRRHSEVETDSKKKKMKLPEHPEGGEPEDD HPEGGEPEDDEAPAKGKFNWKGTIKAILKQ K M K A K G 2 0 0 2 0 0 5 2 1 0 1 2 1 0 4 0 0 0 0 0 0 0 20 1 2174.979 Q9NX58;A8K3Y5 Q9NX58 287 306 LYAR Cell growth-regulating nucleolar protein yes no 3 2.056E-09 89.483 3 1.1303 1.3088 4.7415 3 Median 1.1303 1.3088 4.7415 3 0 Median NaN NaN NaN 0 0 Median 103710000 48659000 55053000 103710000 48659000 55053000 0 0 0 9501 2079 9735 25173;25174;25175 39452;39453;39454;39455 39454 1911 4 MKVELCSFSGYK ______________________________ ______________________________ - M K Y K I 0 0 0 0 1 0 1 1 0 0 1 2 1 1 0 2 0 0 1 1 0 0 12 1 1447.684 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 1 12 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 2 0.00017908 81.017 1 1 0.93963 0.95179 7.7203 2 Median 0.84422 1.0052 NaN 1 0 Median 1.0458 0.90123 NaN 1 0 Median 28048000 14742000 13305000 22342000 11920000 10422000 5705800 2822600 2883200 9502 1140 9736 25176;25177 39456;39457;39458 39457 852 3 MLADDAEAGAEDEK SHDPLTEETRELLDKMLADDAEAGAEDEKE KMLADDAEAGAEDEKEVEELKKQGINPLPK K M L E K E 4 0 0 3 0 0 3 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 14 0 1463.6086 M0QY97;Q9UPT8 M0QY97 172 185 ZC3H4 Zinc finger CCCH domain-containing protein 4 yes no 2 0.00086883 64.439 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1820100 0 1820100 1820100 0 1820100 0 0 0 9503 1352 9737 25178 39459 39459 1011 1 MLAEDELR NDRERVNEAREELMRMLAEDELRDAVLLVF AREELMRMLAEDELRDAVLLVFANKQDLPN R M L L R D 1 1 0 1 0 0 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 975.46953 A0A024R3Q3;A0A024R0Y6;F5H423;P84077;P61204;B4E190 A0A024R3Q3 110 117 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 2 0.010735 66.073 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9504 62 9738 25179 39460 39460 35 1 MLAEREEALEEADELDR EQRKLREERHQEYLKMLAEREEALEEADEL AEREEALEEADELDRLVTAKTESVQYDHPN K M L D R L 3 2 0 2 0 0 6 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 17 1 2017.9262 B4DGP7;V9GYY5;A0A024R1M6;Q9UGY1;B3KQ09 B4DGP7 71 87 MGC3731;NOL12 Nucleolar protein 12 yes no 3 7.1249E-20 117.4 2 0.82006 0.8988 22.523 2 Median 0.82006 0.8988 22.523 2 0 Median NaN NaN NaN 0 0 Median 42244000 20178000 22066000 42244000 20178000 22066000 0 0 0 9505 80 9739 25180;25181 39461;39462 39462 49 0 MLAIYDGFDGFAK AVRSAVRVGIADGHRMLAIYDGFDGFAKGQ HRMLAIYDGFDGFAKGQIKEIGWTDVGGWT R M L A K G 2 0 0 2 0 0 0 2 0 1 1 1 1 2 0 0 0 0 1 0 0 0 13 0 1446.6853 Q01813;Q8WTZ9;O14943;B1APP6;H0Y3Y3 Q01813 443 455 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 6.1475E-05 78.653 2 3.323 3.2547 NaN 1 Median 3.323 3.2547 NaN 1 0 Median NaN NaN NaN 0 0 Median 33774000 4975400 28798000 33774000 4975400 28798000 0 0 0 9506 1677 9740 25182;25183 39463;39464;39465 39463 1476 3 MLALALLDR EVVCRDACDGHEIGRMLALALLDRIVSVDK GHEIGRMLALALLDRIVSVDKQQQWLLYLS R M L D R I 2 1 0 1 0 0 0 0 0 0 4 0 1 0 0 0 0 0 0 0 0 0 9 0 1014.5896 Q92621;B4DE72;Q6P486;U3KPX2 Q92621 1494 1502 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.004091 64.265 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3635300 0 3635300 3635300 0 3635300 0 0 0 9507 1950 9741 25184;25185 39466;39467 39466 1796 2 MLALGNQVGK CDIWYMRFSMDFWQKMLALGNQVGKLYVWD DFWQKMLALGNQVGKLYVWDLEVEDPHKAK K M L G K L 1 0 1 0 0 1 0 2 0 0 2 1 1 0 0 0 0 0 0 1 0 0 10 0 1029.5641 O75530;E9PJK2;H0YEL4;E9PMU3 O75530 376 385 EED Polycomb protein EED yes no 2 0.0017352 68.214 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13788000 0 13788000 13788000 0 13788000 0 0 0 9508 1407 9742 25186 39468 39468 1085 1 MLATLEPEQR PTVEQQGEMARSGGRMLATLEPEQRAEIIH RSGGRMLATLEPEQRAEIIHHLADLLTDQR R M L Q R A 1 1 0 0 0 1 2 0 0 0 2 0 1 0 1 0 1 0 0 0 0 0 10 0 1186.6016 P54886 P54886 376 385 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.00023484 89.698 2 2.7133 2.8624 NaN 1 Median 2.7133 2.8624 NaN 1 0 Median NaN NaN NaN 0 0 Median 34178000 7499200 26679000 34178000 7499200 26679000 0 0 0 9509 1611 9743 25187;25188 39469;39470 39469 1400 2 MLDEGMMLEGFR MSPFGKRRKTASSRKMLDEGMMLEGFRRFD SRKMLDEGMMLEGFRRFDLYEDCKDAACQF K M L F R R 0 1 0 1 0 0 2 2 0 0 2 0 3 1 0 0 0 0 0 0 0 0 12 0 1427.6247 Q86V15 Q86V15 1424 1435 CASZ1 Zinc finger protein castor homolog 1 yes yes 2 0.017922 50.123 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9510 1885 9744 25189 39471 39471 1728;1729;1730 1 MLDEYFEEQMK HLSSIEVLILDEADRMLDEYFEEQMKEIIR EADRMLDEYFEEQMKEIIRMCSHHRQTMLF R M L M K E 0 0 0 1 0 1 3 0 0 0 1 1 2 1 0 0 0 0 1 0 0 0 11 0 1461.6156 B3GQE6;A0A087X059;B7Z6D5;Q96GQ7 B3GQE6 345 355 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.00040105 77.677 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6346100 0 6346100 6346100 0 6346100 0 0 0 9511 899;1099 9745 25190 39472 39472 721;722 1 MLDFFTIFSK ______________________________ ______________________________ - M L S K G 0 0 0 1 0 0 0 0 0 1 1 1 1 3 0 1 1 0 0 0 0 0 10 0 1247.626 Q6IAX9;P08240 Q6IAX9 1 10 SRPR Signal recognition particle receptor subunit alpha yes no 2 0.0015886 70.056 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1715900 0 1715900 1715900 0 1715900 0 0 0 9512 1455 9746 25191 39473 39473 1166 1 MLDHEYTTK KLSPKAEEVATFFAKMLDHEYTTKEIFRKN ATFFAKMLDHEYTTKEIFRKNFFKDWRKEM K M L T K E 0 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 0 1 0 0 0 9 0 1136.5172 P11387;B9EG90;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;E5RIC7;D3DWJ7;E5RJ95;E5RFS0;E5RJ33;H0YBR3;H0YC03;E5RGE7;E5RGR4;E5RFE3;E5RGR2 P11387 263 271 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2;3 1.711E-06 136.21 3 6 1.6101 1.3271 20.059 8 Median 1.5375 1.7335 5.2825 2 0 Median 1.6479 1.3165 14.522 6 0 Median 344860000 130420000 214440000 283560000 106860000 176700000 61297000 23556000 37741000 9513 1470 9747;9748 25192;25193;25194;25195;25196;25197;25198;25199;25200 39474;39475;39476;39477;39478;39479;39480;39481;39482;39483;39484;39485;39486;39487 39484 1188 14 MLDILAEYLK RERGNRVLIFSQMVRMLDILAEYLKYRQFP SQMVRMLDILAEYLKYRQFPFQRLDGSIKG R M L L K Y 1 0 0 1 0 0 1 0 0 1 3 1 1 0 0 0 0 0 1 0 0 0 10 0 1207.6522 O14646 O14646 816 825 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.00029191 84.213 4 1 0.79779 1.1805 49.35 4 Linear 1.1062 1.1538 34.038 3 0 Plateau 0.49523 0.41635 NaN 1 0 Median 29347000 15736000 13612000 27753000 14715000 13038000 1594500 1020500 573970 9514 1366 9749;9750 25201;25202;25203;25204;25205 39488;39489;39490;39491;39492;39493;39494;39495 39491 1033 8 MLDILAEYLTIK RERGNRVLIFSQMVRMLDILAEYLTIKHYP MVRMLDILAEYLTIKHYPFQRLDGSIKGEI R M L I K H 1 0 0 1 0 0 1 0 0 2 3 1 1 0 0 0 1 0 1 0 0 0 12 0 1421.784 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 819 830 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 6.1218E-05 91.549 2 2.2589 2.445 NaN 1 Median 2.2589 2.445 NaN 1 0 Median NaN NaN NaN 0 0 Median 6977100 1603000 5374100 6977100 1603000 5374100 0 0 0 9515 354 9751 25206;25207 39496;39497;39498 39498 264 3 MLDLLEDFLEHEGYK KEGGHRVLIFSQMTKMLDLLEDFLEHEGYK MLDLLEDFLEHEGYKYERIDGGITGNMRQE K M L Y K Y 0 0 0 2 0 0 3 1 1 0 4 1 1 1 0 0 0 0 1 0 0 0 15 0 1850.8761 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1071 1085 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 9.1718E-07 97.797 2 1.2438 1.3611 5.3956 2 Median 1.2438 1.3611 5.3956 2 0 Median NaN NaN NaN 0 0 Median 91647000 39511000 52136000 91647000 39511000 52136000 0 0 0 9516 515 9752 25208;25209 39499;39500;39501;39502 39501 378 4 MLDMGFEPQIR NLRRTTYLVLDEADRMLDMGFEPQIRKIVD EADRMLDMGFEPQIRKIVDQIRPDRQTLMW R M L I R K 0 1 0 1 0 1 1 1 0 1 1 0 2 1 1 0 0 0 0 0 0 0 11 0 1335.6315 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010;B4E132;B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3KRZ1;J3QSF1;Q59F66;Q92841;B4DZQ7 B4DN41 242 252 DDX3X;DDX3Y;DDX5;DKFZp686J01190;DDX17 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 2 0.00053549 77.677 2 2.6318 2.9288 9.2136 2 Median 2.6318 2.9288 9.2136 2 0 Median NaN NaN NaN 0 0 Median 112220000 32147000 80070000 112220000 32147000 80070000 0 0 0 9517 1009;522;1801 9753 25210;25211 39503;39504;39505;39506;39507 39505 383;384 5 MLDNFDCFGDK YCVSQLPLTERGLRKMLDNFDCFGDKLSDE GLRKMLDNFDCFGDKLSDESIFSAFLSVVG K M L D K L 0 0 1 3 1 0 0 1 0 0 1 1 1 2 0 0 0 0 0 0 0 0 11 0 1360.5428 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1243 1253 NCAPD2 Condensin complex subunit 1 yes no 2 0.00021909 77.379 2 3 1.2181 1.1995 16.03 5 Median 1.2551 1.2825 9.458 2 0 Median 1.2181 0.96462 15.198 3 0 Median 62108000 25387000 36720000 48606000 19571000 29035000 13502000 5816300 7685500 9518 908 9754;9755 25212;25213;25214;25215;25216 39508;39509;39510;39511;39512;39513;39514 39508 743 7 MLEPPPSAK AELNSTTEELHKYQKMLEPPPSAKPFTIDV LHKYQKMLEPPPSAKPFTIDVDKKLEEGQK K M L A K P 1 0 0 0 0 0 1 0 0 0 1 1 1 0 3 1 0 0 0 0 0 0 9 0 968.5001 O95235 O95235 716 724 KIF20A Kinesin-like protein KIF20A yes yes 2 0.010908 51.854 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1187400 0 1187400 0 0 0 1187400 0 1187400 9519 1421 9756 25217 39515 39515 1116 1 MLEQLDMR SLKNVKHFVLDECDKMLEQLDMRRDVQEIF VLDECDKMLEQLDMRRDVQEIFRLTPHEKQ K M L M R R 0 1 0 1 0 1 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 8 0 1034.4889 A0A024RCM3;Q13838;A0A0G2JJZ9;Q5STU3;F6WLT2;B4DP52;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;B4DIJ6;F6UJC5;A0A140TA18;B4DIZ8;O00148;K7EQN7;A0A024R7H0;K7EPJ3 O00148 200 207 hCG_2005638;DDX39B;DDX39A;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 0.0021373 98.997 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6111800 0 6111800 6111800 0 6111800 0 0 0 9520 1359;362 9757 25218;25219 39516;39517 39516 269;270 2 MLESITNELSLFSK NHDVQVILFLPNFVKMLESITNELSLFSKT KMLESITNELSLFSKTQGQQVSSLKDLPTS K M L S K T 0 0 1 0 0 0 2 0 0 1 3 1 1 1 0 3 1 0 0 0 0 0 14 0 1610.8226 Q96F86;H3BPN4 Q96F86 374 387 EDC3 Enhancer of mRNA-decapping protein 3 yes no 2 0.015102 42.743 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9521 1964 9758 25220 39518 39518 1808 1 MLFDLLVNCK FAAISDEKVQQKLLRMLFDLLVNCKNSHCA QKLLRMLFDLLVNCKNSHCAQTVSSVFKGI R M L C K N 0 0 1 1 1 0 0 0 0 0 3 1 1 1 0 0 0 0 0 1 0 0 10 0 1251.6356 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8 B2RWN5 1130 1139 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00037199 81.548 1 2 1.79 1.0734 34.278 3 Plateau 1.8796 1.8787 NaN 1 0 Median 1.2808 1.0401 4.4456 2 0 Median 12111000 5198700 6912500 6630300 2836600 3793600 5480900 2362000 3118900 9522 897 9759;9760 25221;25222;25223 39519;39520;39521;39522;39523 39519 713 5 MLGEALSK RQKIVQAEGEAEAAKMLGEALSKNPGYIKL GEAEAAKMLGEALSKNPGYIKLRKIRAAQN K M L S K N 1 0 0 0 0 0 1 1 0 0 2 1 1 0 0 1 0 0 0 0 0 0 8 0 847.44734 J3KPX7;Q99623;F5GY37;Q9BXV3 J3KPX7 237 244 PHB2 Prohibitin-2 yes no 2 0.0031667 86.833 2 1.9911 2.2417 6.9696 2 Median 1.9911 2.2417 6.9696 2 0 Median NaN NaN NaN 0 0 Median 199260000 65119000 134140000 199260000 65119000 134140000 0 0 0 9523 1328 9761 25224;25225 39524;39525;39526;39527 39527 1004 4 MLGKDEDENVK EQEHLRKLEAERLRRMLGKDEDENVKKPKH RLRRMLGKDEDENVKKPKHMSADDLNDGFV R M L V K K 0 0 1 2 0 0 2 1 0 0 1 2 1 0 0 0 0 0 0 1 0 0 11 1 1276.5969 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 297 307 NOP14 Nucleolar protein 14 yes no 2 0.0012526 67.207 1 0.88573 0.9809 NaN 1 Median 0.88573 0.9809 NaN 1 0 Median NaN NaN NaN 0 0 Median 3910500 1533500 2377000 3910500 1533500 2377000 0 0 0 9524 790 9762 25226 39528 39528 632 1 MLIAMVDVIFADVAQPDQTR IIPVIEDARHPHKYRMLIAMVDVIFADVAQ VDVIFADVAQPDQTRIVALNAHTFLRNGGH R M L T R I 3 1 0 3 0 2 0 0 0 2 1 0 2 1 1 0 1 0 0 3 0 0 20 0 2232.1283 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1 Q96BS4 164 183 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 1.3821E-18 107.14 2 1 2.1369 2.2141 NaN 1 Median 2.1369 2.2141 NaN 1 0 Median NaN NaN NaN 0 0 Median 18581000 1826500 16754000 12095000 1826500 10268000 6485900 0 6485900 9525 1506 9763 25227;25228;25229 39529;39530;39531;39532 39531 1271;1272 4 MLIDFSYLLSK CILTMPQYMRQGYGKMLIDFSYLLSKVEEK GYGKMLIDFSYLLSKVEEKVGSPERPLSDL K M L S K V 0 0 0 1 0 0 0 0 0 1 3 1 1 1 0 2 0 0 1 0 0 0 11 0 1328.705 O95251;E7EUP3;B7Z4D9;B3KVJ2;B4DJ40;B4DG18;B4DGH8 O95251 489 499 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 0.00018438 83 2 1.1156 1.1456 1.2179 2 Median 1.1156 1.1456 1.2179 2 0 Median NaN NaN NaN 0 0 Median 22122000 10690000 11432000 22122000 10690000 11432000 0 0 0 9526 1422 9764 25230;25231 39533;39534;39535;39536 39533 1120 4 MLIYDPAK HVKNLDENGLDLLSKMLIYDPAKRISGKMA GLDLLSKMLIYDPAKRISGKMALNHPYFND K M L A K R 1 0 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 0 8 0 949.49429 A0A024QZP7;P06493;Q5H9N4;A0A024QZJ8 A0A024QZP7 267 274 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 0.0043994 75.854 2 1.7113 1.7658 NaN 1 Median 1.7113 1.7658 NaN 1 0 Median NaN NaN NaN 0 0 Median 29018000 10782000 18236000 29018000 10782000 18236000 0 0 0 9527 25 9765 25232;25233 39537;39538;39539 39537 13 3 MLLQSSEGR TGSGKTICAEFAILRMLLQSSEGRCVYITP EFAILRMLLQSSEGRCVYITPMEALAEQVY R M L G R C 0 1 0 0 0 1 1 1 0 0 2 0 1 0 0 2 0 0 0 0 0 0 9 0 1019.507 O75643;A4FU77;B4E150 O75643 1367 1375 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00065314 82.529 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13966000 0 13966000 13966000 0 13966000 0 0 0 9528 1411 9766 25234 39540 39540 1096 1 MLLSAGR DNSSVSSLCISPDGKMLLSAGRTIKLWVLE LCISPDGKMLLSAGRTIKLWVLETKEVYRH K M L G R T 1 1 0 0 0 0 0 1 0 0 2 0 1 0 0 1 0 0 0 0 0 0 7 0 746.41089 Q15061;C9IZK7;C9JEE7 Q15061 182 188 WDR43 WD repeat-containing protein 43 yes no 2 0.0043419 127.1 2 1.4985 1.7046 3.3051 2 Median 1.4985 1.7046 3.3051 2 0 Median NaN NaN NaN 0 0 Median 179820000 81233000 98588000 179820000 81233000 98588000 0 0 0 9529 1752 9767 25235;25236 39541;39542;39543 39541 1603 3 MLLSLR TVAAKVTNVDEEKQRMLLSLRLSDCGLGDL TNVDEEKQRMLLSLRLSDCGLGDLAITSLL R M L L R L 0 1 0 0 0 0 0 0 0 0 3 0 1 0 0 1 0 0 0 0 0 0 6 0 731.43638 Q14690;B4DH82 Q14690 793 798 PDCD11 Protein RRP5 homolog yes no 2 0.030518 66.994 1 1.3532 1.391 NaN 1 Median 1.3532 1.391 NaN 1 0 Median NaN NaN NaN 0 0 Median 19525000 8620200 10905000 19525000 8620200 10905000 0 0 0 9530 1741 9768 25237 39544 39544 1584 1 MLLSPGGVSQPLTASLAR SVSKDQPGRRSQMLRMLLSPGGVSQPLTAS SPGGVSQPLTASLARQRIVEEERERAVQAY R M L A R Q 2 1 0 0 0 1 0 2 0 0 4 0 1 0 2 3 1 0 0 1 0 0 18 0 1796.9819 H6QX63;Q6PK04;I3L0U5 H6QX63 246 263 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 9.3304E-10 85.845 1 2 0.48954 0.4127 2.4282 2 Median NaN NaN NaN 0 0 Median 0.48954 0.4127 2.4282 2 0 Median 22534000 9668200 12865000 7657800 0 7657800 14876000 9668200 5207700 9531 1307 9769 25238;25239;25240 39545;39546;39547 39545 990 3 MLLVDELR NDRERIQEVADELQKMLLVDELRDAVLLLF VADELQKMLLVDELRDAVLLLFANKQDLPN K M L L R D 0 1 0 1 0 0 1 0 0 0 3 0 1 0 0 0 0 0 0 1 0 0 8 0 987.5423 P18085;C9JPM4;C9JAK5;U3KQF2 P18085 110 117 ARF4 ADP-ribosylation factor 4 yes no 2 0.0018243 86.953 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25765000 6127600 19637000 25765000 6127600 19637000 0 0 0 9532 1498 9770 25241;25242 39548;39549 39548 1253 2 MLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDK EYMEKIKQRLFENLRMLPHAPGVQMQAIPE VHEDSGDEDGEDPDKRISIRASDKRIACDE R M L D K R 3 0 0 6 0 2 4 3 2 1 1 1 2 0 4 1 0 0 0 2 0 0 32 0 3428.4773 Q92769;B3KUJ5;Q59GB9 Q92769 373 404 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 4 2.5682E-19 76.162 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17893000 0 17893000 17893000 0 17893000 0 0 0 9533 1952 9771 25243;25244 39550;39551;39552 39552 1799;1800 3 MLPLIWSK VFQFGVPQALFGVRRMLPLIWSKEPGVREA ALFGVRRMLPLIWSKEPGVREAVLNAYRQL R M L S K E 0 0 0 0 0 0 0 0 0 1 2 1 1 0 1 1 0 1 0 0 0 0 8 0 986.56231 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 678 685 NCAPD2 Condensin complex subunit 1 yes no 2 0.060096 40.067 1 1.9132 1.5709 NaN 1 Median NaN NaN NaN 0 0 Median 1.9132 1.5709 NaN 1 0 Median 2413000 846740 1566300 0 0 0 2413000 846740 1566300 9534 908 9772 25245 39553 39553 1 MLPTLGGEEGVSR MVCVEYPGVVRDVAKMLPTLGGEEGVSRIY AKMLPTLGGEEGVSRIYADPTKRLELYFRP K M L S R I 0 1 0 0 0 0 2 3 0 0 2 0 1 0 1 1 1 0 0 1 0 0 13 0 1344.6708 Q9Y5Q8;Q5T7U1 Q9Y5Q8 39 51 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.026038 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9535 2149 9773 25246 39554 39554 2000 1 MLQGESAEAFVAK GRPENCGQIYWRAMKMLQGESAEAFVAKHA MKMLQGESAEAFVAKHAMHQTGHL______ K M L A K H 3 0 0 0 0 1 2 1 0 0 1 1 1 1 0 1 0 0 0 1 0 0 13 0 1379.6755 B3KQ21;Q9NYH9;B3KX32;Q9P1J8 B3KQ21 576 588 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 4.9231E-10 116.23 2 1 1.1852 1.1042 38.568 2 Median 1.3183 1.4504 NaN 1 0 Median 1.0656 0.84067 NaN 1 0 Median 59776000 33151000 26626000 55872000 31218000 24654000 3904500 1933000 1971500 9536 925 9774 25247;25248;25249 39555;39556;39557 39555 760 2 MLQHIDYR ______________________________ TVGKSSKMLQHIDYRMRCILQDGRIFIGTF K M L Y R M 0 1 0 1 0 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 8 0 1074.528 J3QLE5;Q66K91;Q5XPV6;B4DVS0;X5DP00;Q53HE7;Q9UIS4;Q15182;P63162;P14678;J3KRY3;S4R3P3 J3QLE5 9 16 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated protein;Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B yes no 2 0.0010873 101.54 1 1.7649 1.7813 NaN 1 Median 1.7649 1.7813 NaN 1 0 Median NaN NaN NaN 0 0 Median 19691000 7575600 12116000 19691000 7575600 12116000 0 0 0 9537 1041 9775 25250 39558 39558 815 1 MLQPCGPPADKPEEN ENESKARVRFNLMEKMLQPCGPPADKPEEN MLQPCGPPADKPEEN_______________ K M L E N - 1 0 1 1 1 1 2 1 0 0 1 1 1 0 4 0 0 0 0 0 0 0 15 1 1681.744 Q9BWJ5 Q9BWJ5 72 86 SF3B5 Splicing factor 3B subunit 5 yes yes 2 0.0046561 55.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9538 2012 9776 25251 39559 39559 1850 1 MLQTDPTARPTINELLNDEFFTSGYIPAR IPKHINPVAASLIQKMLQTDPTARPTINEL LLNDEFFTSGYIPARLPITCLTIPPRFSIA K M L A R L 2 2 2 2 0 1 2 1 0 2 3 0 1 2 3 1 4 0 1 0 0 0 29 1 3309.634 P53350;B2R841;B4E083;Q59GD0;D3DWF3;I3L2H5 P53350 285 313 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 3 3.0111E-07 44.596 1 1.6084 1.7466 NaN 1 Median 1.6084 1.7466 NaN 1 0 Median NaN NaN NaN 0 0 Median 17626000 7247700 10379000 17626000 7247700 10379000 0 0 0 9539 1604 9777 25252 39560 39560 1390 1 MLSALLTGVNR CFFRTCVKKKDVESKMLSALLTGVNRAYPY VESKMLSALLTGVNRAYPYSQTGDDKVREQ K M L N R A 1 1 1 0 0 0 0 1 0 0 3 0 1 0 0 1 1 0 0 1 0 0 11 0 1173.654 B2R5U7;Q03701 B2R5U7 482 492 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 3.3156E-08 114.5 2 1.512 1.5604 1.2964 2 Median 1.512 1.5604 1.2964 2 0 Median NaN NaN NaN 0 0 Median 33750000 13346000 20404000 33750000 13346000 20404000 0 0 0 9540 836;1683 9778 25253;25254 39561;39562;39563 39563 663 3 MLSCAGADR IRVRLHPFHVIRINKMLSCAGADRLQTGMR VIRINKMLSCAGADRLQTGMRGAFGKPQGT K M L D R L 2 1 0 1 1 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 9 0 979.42154 F8W7C6;A0A087WV22;H7C123;H7C2C5;X1WI28;X5D2T3;P27635;B8A6G2;X5D2W5;A6QRI9;Q96L21 X1WI28 102 110 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like no no 2 0.0019632 83.265 2 1 1.2321 1.0484 NaN 1 Median NaN NaN NaN 0 0 Median 1.2321 1.0484 NaN 1 0 Median 10991000 7934900 3055700 5597800 5597800 0 5392800 2337100 3055700 9541 1524;1266 9779 25255;25256;25257 39564;39565;39566;39567 39564 4 MLTAQDMSYDEAR FLQDCQELSLWINEKMLTAQDMSYDEARNL EKMLTAQDMSYDEARNLHSKWLKHQAFMAE K M L A R N 2 1 0 2 0 1 1 0 0 0 1 0 2 0 0 1 1 0 1 0 0 0 13 0 1529.649 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1209 1221 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.013008 50.108 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9542 415 9780 25258 39568 39568 303;304 1 MLVDDIGDVTITNDGATILK ANIVKSSLGPVGLDKMLVDDIGDVTITNDG IGDVTITNDGATILKLLEVEHPAAKVLCEL K M L L K L 1 0 1 4 0 0 0 2 0 3 2 1 1 0 0 0 3 0 0 2 0 0 20 0 2103.0769 P17987;F5H136;E7ERF2;F5H726;F5GZI8;F5H676 P17987 44 63 TCP1 T-complex protein 1 subunit alpha yes no 2 2.1219E-08 87.18 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4797000 0 4797000 4797000 0 4797000 0 0 0 9543 1496 9781 25259;25260 39569;39570;39571 39570 1251 3 MLVLDEADEMLNK FDMIRRRSLRTRAIKMLVLDEADEMLNKGF IKMLVLDEADEMLNKGFKEQIYDVYRYLPP K M L N K G 1 0 1 2 0 0 2 0 0 0 3 1 2 0 0 0 0 0 0 1 0 0 13 0 1519.7262 A0A024R8W0;P38919 A0A024R8W0 183 195 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.045606 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9544 261 9782 25261 39572 39572 199;200 1 MLVSGQGPVMENAQGLGFR SHSPMKLFSEYHEKRMLVSGQGPVMENAQG GQGPVMENAQGLGFRNVVTVDELRMAFPLL R M L F R N 1 1 1 0 0 2 1 4 0 0 2 0 2 1 1 1 0 0 0 2 0 0 19 0 1989.9765 Q9BXW7 Q9BXW7 134 152 CECR5 Cat eye syndrome critical region protein 5 yes yes 2 0.00022441 58.674 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9545 2015 9783 25262 39573 39573 1851;1852 1 MLVTFDEELRPLPVSVR SHYVLYGLVAAMQPRMLVTFDEELRPLPVS VTFDEELRPLPVSVRVGQAVDVVGQAGKPK R M L V R V 0 2 0 1 0 0 2 0 0 0 3 0 1 1 2 1 1 0 0 3 0 0 17 1 2000.0765 Q59EG8;Q13200;B4DM22;Q13041 Q59EG8 834 850 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 2.0966E-05 61.732 2 3.528 3.8532 7.677 2 Median 3.528 3.8532 7.677 2 0 Median NaN NaN NaN 0 0 Median 40217000 11825000 28391000 40217000 11825000 28391000 0 0 0 9546 1707 9784 25263;25264 39574;39575 39574 1539 2 MLYLIGLGLGDAK ______________________________ ______________________________ - M L A K D 1 0 0 1 0 0 0 3 0 1 4 1 1 0 0 0 0 0 1 0 0 0 13 0 1362.7581 Q9H2P9 Q9H2P9 1 13 DPH5 Diphthine synthase yes yes 2 0.011032 44.863 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9547 2026 9785 25265 39576 39576 1864 1 MMVAGFK PGKYNILGTNTIMDKMMVAGFKKQMADTGK GTNTIMDKMMVAGFKKQMADTGKLNTLLQR K M M F K K 1 0 0 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 0 1 0 0 7 0 782.3819 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 496 502 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.048826 48.174 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9548 999 9786 25266 39577 39577 792 1 MNAQETATGMAFEEPIDEK PSRARHFSEHPSTSKMNAQETATGMAFEEP ETATGMAFEEPIDEKKFEKTEDGGEFEEGA K M N E K K 3 0 1 1 0 1 4 1 0 1 0 1 2 1 1 0 2 0 0 0 0 0 19 0 2110.9187 O43719;B4DRS4 O43719 411 429 HTATSF1 HIV Tat-specific factor 1 yes no 2 5.1745E-18 109.84 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7506300 0 7506300 7506300 0 7506300 0 0 0 9549 1388 9787 25267 39578 39578 1058;1059 1 MNCYALIR TLSGSDRNAHLNALKMNCYALIRLLESFET AHLNALKMNCYALIRLLESFETMASQTNLV K M N I R L 1 1 1 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 8 0 1039.4943 B3KMS0;Q15021;B4E0B7;A0PJ76 B3KMS0 119 126 NCAPD2 Condensin complex subunit 1 yes no 2 0.0040332 79.116 2 2 1.169 1.1269 17.025 4 Median 1.008 1.0607 17.949 2 0 Median 1.4023 1.2093 19.379 2 0 Median 64366000 28354000 36012000 58825000 26035000 32790000 5541300 2319700 3221600 9550 908 9788;9789 25268;25269;25270;25271 39579;39580;39581;39582;39583 39581 744 5 MNEEISSDSESESLAPR ADSAGDRGKSKGGGKMNEEISSDSESESLA EEISSDSESESLAPRKPEEEEEEELEETAQ K M N P R K 1 1 1 1 0 0 4 0 0 1 1 0 1 0 1 5 0 0 0 0 0 0 17 0 1879.8106 O43818 O43818 45 61 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 2.5052E-25 139.46 2 1.8268 1.8335 1.5715 2 Median 1.8268 1.8335 1.5715 2 0 Median NaN NaN NaN 0 0 Median 30611000 10371000 20240000 30611000 10371000 20240000 0 0 0 9551 1389 9790 25272;25273 39584;39585;39586;39587;39588 39587 1060 5 MNEVISLWK LIDVNHYAKDEVAARMNEVISLWKKLLEAT DEVAARMNEVISLWKKLLEATELKGIKLRE R M N W K K 0 0 1 0 0 0 1 0 0 1 1 1 1 0 0 1 0 1 0 1 0 0 9 0 1118.5794 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 653 661 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0010431 76.1 1 1.6867 1.7364 NaN 1 Median 1.6867 1.7364 NaN 1 0 Median NaN NaN NaN 0 0 Median 11603000 3561800 8041300 11603000 3561800 8041300 0 0 0 9552 523 9791 25274 39589 39589 386 1 MNGPADGEVDYKK ______________________________ ______________________________ - M N K K K 1 0 1 2 0 0 1 2 0 0 0 2 1 0 1 0 0 0 1 1 0 0 13 1 1422.6449 Q8NBZ0;J3KNE2;H3BNM4;I3NI13;I3L270 Q8NBZ0 1 13 INO80E INO80 complex subunit E yes no 2 2.4007E-05 87.568 3 0.81205 0.92473 NaN 1 Median 0.81205 0.92473 NaN 1 0 Median NaN NaN NaN 0 0 Median 9291500 5022800 4268800 9291500 5022800 4268800 0 0 0 9553 1921 9792 25275;25276;25277 39590;39591;39592;39593 39593 1749 4 MNLASSFVNGFVNAAFGQDK NNRFGGSGSQVDSARMNLASSFVNGFVNAA SFVNGFVNAAFGQDKLLTDDGNKWLYKNKD R M N D K L 3 0 3 1 0 1 0 2 0 0 1 1 1 3 0 2 0 0 0 2 0 0 20 0 2116.0048 Q59EG8;Q13200;B4DM22;Q9NSM5 Q59EG8 375 394 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.0001591 51.546 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3160500 0 3160500 3160500 0 3160500 0 0 0 9554 1707 9793 25278 39594 39594 1540 1 MNSGPPGLGGK PPSQGGKRKGGLGGKMNSGPPGLGGKRKGG LGGKMNSGPPGLGGKRKGGQRPGGKRRK__ K M N G K R 0 0 1 0 0 0 0 4 0 0 1 1 1 0 2 1 0 0 0 0 0 0 11 0 1013.4964 Q15050 Q15050 342 352 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 2.8859E-10 128.6 2 1.1162 1.2559 0.80639 2 Median 1.1162 1.2559 0.80639 2 0 Median NaN NaN NaN 0 0 Median 135420000 69921000 65502000 135420000 69921000 65502000 0 0 0 9555 1750 9794 25279;25280 39595;39596;39597;39598 39595 1599 4 MNTCVPHPR YSRQGEVLASRKDFRMNTCVPHPRGAFMLE SRKDFRMNTCVPHPRGAFMLEPEGMSPMEP R M N P R G 0 1 1 0 1 0 0 0 1 0 0 0 1 0 2 0 1 0 0 1 0 0 9 0 1110.5063 A0A0A6YYG7;Q6IBW4;E5RJN3 A0A0A6YYG7 181 189 NCAPH2 Condensin-2 complex subunit H2 yes no 2 0.014358 48.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2735900 0 2735900 2735900 0 2735900 0 0 0 9556 491 9795 25281 39599 39599 338 1 MNVEEDVQEEQSK LDKDDRRLLSYKDGKMNVEEDVQEEQSKEA GKMNVEEDVQEEQSKEASDPESNEEEGDSS K M N S K E 0 0 1 1 0 2 4 0 0 0 0 1 1 0 0 1 0 0 0 2 0 0 13 0 1563.6723 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 338 350 NOP14 Nucleolar protein 14 yes no 2 3.1045E-89 231.17 2 3 1.2202 1.2064 16.534 5 Median 1.2195 1.3324 2.0498 2 0 Median 1.2428 0.96465 13.037 3 0 Median 113650000 50873000 62780000 87746000 39529000 48217000 25908000 11344000 14563000 9557 790 9796;9797 25282;25283;25284;25285;25286 39600;39601;39602;39603;39604;39605;39606;39607 39603 633 8 MNVLADALK ______________________________ ______________________________ R M N L K S 2 0 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 973.52665 B2R4W8;P62244;I3L3P7;A8K7H3;I3L246;H3BN98;H3BV27;H3BT37;I3L303 B2R4W8 4 12 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 0.00016426 101.54 5 4 0.84272 0.68294 38.636 6 Median 1.1448 1.3294 47.658 3 0 Median 0.77108 0.68294 10.619 3 0 Plateau 618310000 290090000 328220000 528060000 249850000 278220000 90249000 40248000 50001000 9558 831 9798;9799 25287;25288;25289;25290;25291;25292;25293;25294;25295 39608;39609;39610;39611;39612;39613;39614;39615;39616;39617;39618;39619;39620;39621;39622;39623;39624;39625;39626;39627 39610 660 20 MNVSPDVNYEELAR NEEARARIMQIHSRKMNVSPDVNYEELARC KMNVSPDVNYEELARCTDDFNGAQCKAVCV K M N A R C 1 1 2 1 0 0 2 0 0 0 1 0 1 0 1 1 0 0 1 2 0 0 14 0 1635.7563 E9PM69;R4GNH3;A0A140VK42;P17980;A8K781 E9PM69 331 344 PSMC3 26S protease regulatory subunit 6A yes no 2 0.0010519 64.55 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9559 617 9800 25296;25297;25298 39628;39629;39630 39630 467 3 MNVTPEVK ______________________________ ______________________________ - M N V K S 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 0 1 0 0 2 0 0 8 0 916.4688 Q5T3I0;A8KAG1;A0A0A0MRK1;F8W895;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 1 8 GPATCH4 G patch domain-containing protein 4 yes no 1 0.0033929 64.265 2 1.3079 1.3592 13.152 2 Median 1.3079 1.3592 13.152 2 0 Median NaN NaN NaN 0 0 Median 33703000 14442000 19261000 33703000 14442000 19261000 0 0 0 9560 1820 9801 25299;25300 39631;39632 39632 1679 2 MPCQSLQPEPINTPTHTK DHAKAPKSEKGKITKMPCQSLQPEPINTPT QSLQPEPINTPTHTKQQLKASLGKVGVKEE K M P T K Q 0 0 1 0 1 2 1 0 1 1 1 1 1 0 4 1 3 0 0 0 0 0 18 0 2077.9925 P46013 P46013 1005 1022 MKI67 Antigen KI-67 yes yes 2;3 2.7414E-10 103.14 3 4 2.7474 2.5083 19.488 6 Median 2.2399 2.5083 5.2503 2 0 Median 3.3995 2.7451 24.448 4 0 Median 216920000 69834000 147080000 165630000 57398000 108230000 51288000 12435000 38853000 9561 1569 9802;9803 25301;25302;25303;25304;25305;25306;25307 39633;39634;39635;39636;39637;39638;39639;39640;39641;39642;39643;39644 39637 1336 12 MPCTEDYLSLILNR GKVGTRCCTKPESERMPCTEDYLSLILNRL RMPCTEDYLSLILNRLCVLHEKTPVSEKVT R M P N R L 0 1 1 1 1 0 1 0 0 1 3 0 1 0 1 1 1 0 1 0 0 0 14 0 1723.8273 CON__P02769 CON__P02769 469 482 yes yes 2 5.0726E-10 107.06 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31177000 31177000 0 28756000 28756000 0 2421500 2421500 0 + 9562 1153 9804 25308;25309;25310 39645;39646;39647 39645 861 3 MPEEEDEAPVLDVR PSNQKPVKSPDNSIKMPEEEDEAPVLDVRY KMPEEEDEAPVLDVRYASAS__________ K M P V R Y 1 1 0 2 0 0 4 0 0 0 1 0 1 0 2 0 0 0 0 2 0 0 14 0 1627.74 Q9UKL0 Q9UKL0 467 480 RCOR1 REST corepressor 1 yes yes 2 0.0025244 55.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9563 2106 9805 25311 39648 39648 1936 1 MPGSVIPPPLVR NIPAGKPSLQTSSARMPGSVIPPPLVRGGQ SARMPGSVIPPPLVRGGQQASSKLGPQASS R M P V R G 0 1 0 0 0 0 0 1 0 1 1 0 1 0 4 1 0 0 0 2 0 0 12 0 1261.7217 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 214 225 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.002577 63.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9564 229 9806 25312 39649 39649 169 1 MPLHTIIPLLQELTK LQTRNVNLIKKTVLRMPLHTIIPLLQELTK MPLHTIIPLLQELTKRLQGHPNSAVLMVQW R M P T K R 0 0 0 0 0 1 1 0 1 2 4 1 1 0 2 0 2 0 0 0 0 0 15 0 1746.0114 Q15061 Q15061 497 511 WDR43 WD repeat-containing protein 43 yes yes 3 1.351E-07 103.72 6 1.2455 1.2637 31.054 6 Median 1.2455 1.2637 31.054 6 0 Median NaN NaN NaN 0 0 Median 240020000 123270000 116750000 240020000 123270000 116750000 0 0 0 9565 1752 9807;9808 25313;25314;25315;25316;25317;25318 39650;39651;39652;39653;39654;39655;39656 39654 1604 7 MPLHTIIPLLQELTKR LQTRNVNLIKKTVLRMPLHTIIPLLQELTK PLHTIIPLLQELTKRLQGHPNSAVLMVQWL R M P K R L 0 1 0 0 0 1 1 0 1 2 4 1 1 0 2 0 2 0 0 0 0 0 16 1 1902.1125 Q15061 Q15061 497 512 WDR43 WD repeat-containing protein 43 yes yes 3;4 0.00037402 44.567 3 1.3816 1.1642 29.245 3 Median NaN NaN NaN 0 0 Median 1.3816 1.1642 29.245 3 0 Median 17574000 7645200 9929300 0 0 0 17574000 7645200 9929300 9566 1752 9809 25319;25320;25321 39657;39658;39659;39660 39660 4 MPPPTILSTVPR GAGVGTTLTPLPPPKMPPPTILSTVPRQMF PPKMPPPTILSTVPRQMFSDAGSGDDALDG K M P P R Q 0 1 0 0 0 0 0 0 0 1 1 0 1 0 4 1 2 0 0 1 0 0 12 0 1307.7271 Q8NBZ0;J3KNE2;H3BNM4;Q8TET7 Q8NBZ0 208 219 INO80E;FLJ00079 INO80 complex subunit E yes no 2 0.00036906 66.19 1 1.0368 1.1292 NaN 1 Median 1.0368 1.1292 NaN 1 0 Median NaN NaN NaN 0 0 Median 29149000 15761000 13388000 29149000 15761000 13388000 0 0 0 9567 1921 9810 25322 39661 39661 1750 1 MPSESAAQSLAVALPLQTK PGPGVALTADTKIQRMPSESAAQSLAVALP SAAQSLAVALPLQTKADANRTAPSGSEYRH R M P T K A 4 0 0 0 0 2 1 0 0 0 3 1 1 0 2 3 1 0 0 1 0 0 19 0 1941.0241 O43660;D6RA26 O43660 117 135 PLRG1 Pleiotropic regulator 1 yes no 2 0.0021541 49.31 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9568 1386 9811 25323 39662 39662 1057 1 MPTKEDEEEDEPVVIK TVPKSPAFALKNRIRMPTKEDEEEDEPVVI PTKEDEEEDEPVVIKAQPVPHYGVPFKPQI R M P I K A 0 0 0 2 0 0 5 0 0 1 0 2 1 0 2 0 1 0 0 2 0 0 16 1 1886.8819 Q643R0;Q9ULW0;B3KM90 Q643R0 497 512 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 3.8234E-05 65.811 1 1.1372 1.3013 NaN 1 Median 1.1372 1.3013 NaN 1 0 Median NaN NaN NaN 0 0 Median 18124000 8082300 10042000 18124000 8082300 10042000 0 0 0 9569 1837 9812 25324 39663;39664 39664 1693 2 MPVGDFFEER VVHSVRREHFSFSPRMPVGDFFEERDTPEG SFSPRMPVGDFFEERDTPEGLQWVQLSAEE R M P E R D 0 1 0 1 0 0 2 1 0 0 0 0 1 2 1 0 0 0 0 1 0 0 10 0 1225.5438 J3QK86;J3KPG5;F8VU39;Q9UIF9;H0YII3 J3QK86 584 593 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.0017169 64.04 2 1.1816 1.1935 0.57603 2 Median 1.1816 1.1935 0.57603 2 0 Median NaN NaN NaN 0 0 Median 33288000 16073000 17215000 33288000 16073000 17215000 0 0 0 9570 1260 9813 25325;25326 39665;39666;39667 39665 965 3 MQDTSVSFGYQLDLPK SDQLQVGVEFEASTRMQDTSVSFGYQLDLP QDTSVSFGYQLDLPKANLLFKGSVDSNWIV R M Q P K A 0 0 0 2 0 2 0 1 0 0 2 1 1 1 1 2 1 0 1 1 0 0 16 0 1827.8713 O96008;K7EKG4 O96008 294 309 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 6.8202E-07 95.651 1 1.741 1.9482 NaN 1 Median 1.741 1.9482 NaN 1 0 Median NaN NaN NaN 0 0 Median 84333000 31297000 53036000 84333000 31297000 53036000 0 0 0 9571 1433 9814 25327 39668 39668 1125 1 MQEGEGHSQLCLDR LGSFHDLLRREPMLRMQEGEGHSQLCLDRL RMQEGEGHSQLCLDRLQLEAIHKVRFSPNL R M Q D R L 0 1 0 1 1 2 2 2 1 0 2 0 1 0 0 1 0 0 0 0 0 0 14 0 1658.7141 Q8WUA4;Q53SY8;H0Y4Q6;H7C318;H7C1A9 Q8WUA4 818 831 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.0010226 65.179 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9572 1938 9815 25328 39669 39669 1775 1 MQEVVANLQYDDGSGMK DGDLIESFLDISRPKMQEVVANLQYDDGSG EVVANLQYDDGSGMKREATADDLIKVVEEL K M Q M K R 1 0 1 2 0 2 1 2 0 0 1 1 2 0 0 1 0 0 1 2 0 0 17 0 1883.8393 Q16531;B4DSA8;B4DZP5 Q16531 1105 1121 DDB1 DNA damage-binding protein 1 yes no 2 1.6468E-06 87.498 3 1.2127 1.2291 1.0596 2 Median 1.2127 1.2291 1.0596 2 0 Median NaN NaN NaN 0 0 Median 56256000 27048000 29208000 56256000 27048000 29208000 0 0 0 9573 1770 9816;9817 25329;25330;25331 39670;39671;39672;39673;39674;39675 39671 1638;1639 6 MQEVVANLQYDDGSGMKR DGDLIESFLDISRPKMQEVVANLQYDDGSG VVANLQYDDGSGMKREATADDLIKVVEELT K M Q K R E 1 1 1 2 0 2 1 2 0 0 1 1 2 0 0 1 0 0 1 2 0 0 18 1 2039.9405 Q16531;B4DSA8;B4DZP5 Q16531 1105 1122 DDB1 DNA damage-binding protein 1 yes no 3 1.0167E-08 94.387 1 1.3395 1.5077 NaN 1 Median 1.3395 1.5077 NaN 1 0 Median NaN NaN NaN 0 0 Median 22199000 8911600 13287000 22199000 8911600 13287000 0 0 0 9574 1770 9818 25332 39676;39677;39678 39678 1638;1639 3 MQGQEAVLAMSSR TRYLGSRPVKLFRVRMQGQEAVLAMSSRSW VRMQGQEAVLAMSSRSWLSYSYQSRFHLTP R M Q S R S 2 1 0 0 0 2 1 1 0 0 1 0 2 0 0 2 0 0 0 1 0 0 13 0 1406.6646 A8K6V3;Q15393;B3KQH1 A8K6V3 706 718 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.00092242 76.522 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9575 764 9819 25333 39679 39679 589;590 1 MQGSLEAHVNGFR KLKDLYIRPNIAQKRMQGSLEAHVNGFRFT KRMQGSLEAHVNGFRFTSVRGDKVDILYNN R M Q F R F 1 1 1 0 0 1 1 2 1 0 1 0 1 1 0 1 0 0 0 1 0 0 13 0 1444.6881 Q9Y5B9 Q9Y5B9 676 688 SUPT16H FACT complex subunit SPT16 yes yes 2 4.5337E-06 100.88 1 0.58459 0.59248 NaN 1 Median 0.58459 0.59248 NaN 1 0 Median NaN NaN NaN 0 0 Median 18079000 11678000 6400500 18079000 11678000 6400500 0 0 0 9576 2148 9820 25334 39680;39681 39681 1994 2 MQHLIAR SGETAKGDYPLEAVRMQHLIAREAEAAIYH DYPLEAVRMQHLIAREAEAAIYHLQLFEEL R M Q A R E 1 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 7 0 867.47489 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;Q8WUW7;Q504U3;H3BR70 V9HWB8 377 383 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 0.015672 58.167 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14538000 0 14538000 14538000 0 14538000 0 0 0 9577 1481 9821 25335 39682 39682 1239 1 MQHNLEQQIQAR GLAQQWDQLDQLGMRMQHNLEQQIQARNTT GMRMQHNLEQQIQARNTTGVTEEALKEFSM R M Q A R N 1 1 1 0 0 4 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 12 0 1494.7361 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 2289 2300 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 5.8216E-05 88.187 2 1.6335 1.624 10.343 2 Median 1.6335 1.624 10.343 2 0 Median NaN NaN NaN 0 0 Median 21942000 10245000 11697000 21942000 10245000 11697000 0 0 0 9578 523 9822 25336;25337 39683;39684 39684 387 2 MQIFVK ______________________________ ______________________________ - M Q V K T 0 0 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 0 0 1 0 0 6 0 764.42548 Q5RKT7;B2RDW1;P62979;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;M0R1V7;Q49A90;J3QSA3;F5GZ39;A8CGI2 Q5RKT7 1 6 RPS27A;HEL112;UBB;UBC;UBA52;UbC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 1;2 0.019275 81.716 5 3 1.6785 1.9653 69.38 7 Median 1.886 1.998 3.8515 4 0 Median 0.66222 0.54218 5.7404 3 0 Median 635550000 370730000 264820000 559380000 325010000 234370000 76170000 45723000 30447000 9579 891 9823;9824 25338;25339;25340;25341;25342;25343;25344;25345 39685;39686;39687;39688;39689;39690;39691;39692 39687 700 5 MQLLEIITTEK PEKVIGMHYFSPVDKMQLLEIITTEKTSKD PVDKMQLLEIITTEKTSKDTSASAVAVGLK K M Q E K T 0 0 0 0 0 1 2 0 0 2 2 1 1 0 0 0 2 0 0 0 0 0 11 0 1317.7214 E9KL44;P40939;B4DRH6;B4DDZ5 E9KL44 506 516 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.017959 42.336 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17435000 0 17435000 17435000 0 17435000 0 0 0 9580 1228 9825 25346 39693 39693 944 1 MQLSAELQSDTEEILSK PHVKTNLLLQAHLSRMQLSAELQSDTEEIL LSAELQSDTEEILSKAIRLIQACVDVLSSN R M Q S K A 1 0 0 1 0 2 3 0 0 1 3 1 1 0 0 3 1 0 0 0 0 0 17 0 1920.935 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5;Q7L5W4;Q9P172 O75643 1902 1918 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 2.1984E-25 140.82 2 1 1.4893 1.5452 57.015 3 Plateau 1.487 1.5713 2.3745 2 0 Median 0.74256 0.58557 NaN 1 0 Median 77507000 32259000 45248000 66668000 26131000 40537000 10839000 6127400 4711100 9581 1411 9826 25347;25348;25349 39694;39695;39696;39697 39695 1097 4 MQNDAGEFVDLYVPR ______________________________ MQNDAGEFVDLYVPRKCSASNRIIGAKDHA - M Q P R K 1 1 1 2 0 1 1 1 0 0 1 0 1 1 1 0 0 0 1 2 0 0 15 0 1752.8141 Q8WVC2;Q6FGH5;P63220;Q9BYK1;Q9BYK2;Q13666 Q8WVC2 1 15 RPS21 40S ribosomal protein S21 yes no 2 5.4378E-06 94.122 1 1.3571 1.3498 NaN 1 Median 1.3571 1.3498 NaN 1 0 Median NaN NaN NaN 0 0 Median 16304000 6825600 9478000 16304000 6825600 9478000 0 0 0 9582 1655 9827 25350 39698 39698 1434 1 MQNTDDEERPQLSDDER GSDEDKLQNSDDDEKMQNTDDEERPQLSDD NTDDEERPQLSDDERQQLSEEEKANSDDER K M Q E R Q 0 2 1 4 0 2 3 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 17 1 2076.8654 B4DNM0;Q8WVC0 B4DNM0 185 201 LEO1 RNA polymerase-associated protein LEO1 yes no 3 4.6936E-06 83.966 2 2.3558 2.526 19.52 2 Median 2.3558 2.526 19.52 2 0 Median NaN NaN NaN 0 0 Median 23782000 8170200 15612000 23782000 8170200 15612000 0 0 0 9583 1012 9828 25351;25352 39699;39700;39701 39699 801 3 MQQENMKPQEQLTLEPYER STASAEAVFASEVKKMQQENMKPQEQLTLE NMKPQEQLTLEPYERDHAVVVGVYRPPPKV K M Q E R D 0 1 1 0 0 4 4 0 0 0 2 1 2 0 2 0 1 0 1 0 0 0 19 1 2391.1199 Q96BS4;P22087;M0QXL5;M0R299 Q96BS4 225 243 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3 1.4887E-08 92.31 3 5 1.2168 1.0111 49.699 7 Median 1.2384 1.4853 3.9883 2 0 Median 0.92961 0.78113 46.654 5 0 Median 670420000 314390000 356030000 597670000 269260000 328410000 72750000 45129000 27622000 9584 1506 9829;9830;9831 25353;25354;25355;25356;25357;25358;25359;25360 39702;39703;39704;39705;39706;39707;39708;39709;39710;39711;39712 39704 1273;1274 11 MQQLNAAHQEALMK TYMEFLWQYKSSADKMQQLNAAHQEALMKL KMQQLNAAHQEALMKLERLDSVPVEEQEEF K M Q M K L 3 0 1 0 0 3 1 0 1 0 2 1 2 0 0 0 0 0 0 0 0 0 14 0 1611.7861 A0A024R8Y0;Q9BZD4;E9PQC4;B1AQT4;E9PP32 A0A024R8Y0 152 165 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 4.4981E-14 125.82 2 1.4541 1.4739 0.0029282 2 Median 1.4541 1.4739 0.0029282 2 0 Median NaN NaN NaN 0 0 Median 17311000 6407400 10903000 17311000 6407400 10903000 0 0 0 9585 264 9832 25361;25362 39713;39714;39715;39716;39717 39716 202;203 5 MQQNIQELEEQLEEEESAR EEEERCQHLQAEKKKMQQNIQELEEQLEEE IQELEEQLEEEESARQKLQLEKVTTEAKLK K M Q A R Q 1 1 1 0 0 4 7 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0 19 0 2332.0489 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;Q99529 A0A024R1N1 941 959 MYH9 Myosin-9 yes no 2 5.9862E-17 115.82 3 3 1.9322 2.1142 20.235 5 Median 1.9231 2.1727 3.864 2 0 Median 1.9322 1.5635 23.803 3 0 Median 200850000 64392000 136460000 166540000 53381000 113160000 34311000 11012000 23300000 9586 81 9833;9834 25363;25364;25365;25366;25367;25368 39718;39719;39720;39721;39722;39723;39724;39725;39726;39727 39723 67 10 MQQPQISVYSGSDR TSSTTTTTITTSSSRMQQPQISVYSGSDRH RMQQPQISVYSGSDRHAVQVIQQALHRPPS R M Q D R H 0 1 0 1 0 3 0 1 0 1 0 0 1 0 1 3 0 0 1 1 0 0 14 0 1594.741 A5YM43;Q8NDX5;E7EX82;B4E2T1;F8WDA4;G5E9U7;C9J6H0;B4DTC4;C9JAU4;C9JYH7;B4DYD1 A5YM43 31 44 PHC3 Polyhomeotic-like protein 3 yes no 2 0.00047833 76.927 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9587 677 9835 25369 39728 39728 525 1 MQQQLDEYQELLDIK LLAEKEREMAEMRARMQQQLDEYQELLDIK MQQQLDEYQELLDIKLALDMEIHAYRKLLE R M Q I K L 0 0 0 2 0 4 2 0 0 1 3 1 1 0 0 0 0 0 1 0 0 0 15 0 1892.919 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;B4DFR3 P02545 352 366 LMNA Prelamin-A/C;Lamin-A/C yes no 2 1.2705E-48 187.44 2 4 1.4227 1.1222 36.432 6 Median 1.7279 1.9768 2.7637 2 0 Median 1.2517 1.0113 13.267 4 0 Median 438120000 167570000 270550000 347070000 125940000 221140000 91044000 41630000 49414000 9588 1440 9836;9837 25370;25371;25372;25373;25374;25375 39729;39730;39731;39732;39733;39734;39735;39736;39737;39738 39730 1138 10 MREDYDSVEQDGDEPGPQR RKGRGFGSEEGSRARMREDYDSVEQDGDEP YDSVEQDGDEPGPQRSVEGWILFVTGVHEE R M R Q R S 0 2 0 4 0 2 3 2 0 0 0 0 1 0 2 1 0 0 1 1 0 0 19 1 2221.9182 A0A023T787;Q9Y5S9 A0A023T787 50 68 RBM8;RBM8A RNA-binding protein 8A yes no 3 1.5139E-06 78.917 2 2.0256 2.1958 7.4786 2 Median 2.0256 2.1958 7.4786 2 0 Median NaN NaN NaN 0 0 Median 35288000 9803200 25485000 35288000 9803200 25485000 0 0 0 9589 4 9838 25376;25377 39739;39740;39741;39742 39742 1 4 MRIESLSSQLSNLQK TSTVNSAREELMESRMRIESLSSQLSNLQK MRIESLSSQLSNLQKESRACLERIQELEDL R M R Q K E 0 1 1 0 0 2 1 0 0 1 3 1 1 0 0 4 0 0 0 0 0 0 15 1 1732.9142 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 298 312 LMNB1 Lamin-B1 yes no 3 0.0020421 46.323 2 1.5733 1.8071 NaN 1 Median 1.5733 1.8071 NaN 1 0 Median NaN NaN NaN 0 0 Median 25120000 12346000 12774000 25120000 12346000 12774000 0 0 0 9590 1502 9839 25378;25379 39743;39744 39743 1261 1 MRPGVACSVSQAQK EIRNFLGEKYIRRVRMRPGVACSVSQAQKD RMRPGVACSVSQAQKDELILEGNDIELVSN R M R Q K D 2 1 0 0 1 2 0 1 0 0 0 1 1 0 1 2 0 0 0 2 0 0 14 1 1517.7443 Q53Z07;P32969;E7ESE0;H0Y9V9 Q53Z07 128 141 RPL9 60S ribosomal protein L9 yes no 2;3 1.2829E-14 133.07 5 3 1.0276 1.0602 29.016 8 Median 1.0261 1.2293 28.07 5 0 Median 1.0833 0.90362 27.718 3 0 Median 602340000 291510000 310830000 585820000 283040000 302780000 16514000 8466400 8047100 9591 1537 9840;9841 25380;25381;25382;25383;25384;25385;25386;25387 39745;39746;39747;39748;39749;39750;39751;39752;39753;39754;39755;39756;39757;39758;39759 39750 1297 15 MRPLTEEETR ______________________________ ______________________________ - M R T R V 0 2 0 0 0 0 3 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 10 1 1260.6132 Q9Y221;B3KM49;J3QLW7 Q9Y221 1 10 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2;3 1.1784E-08 123.11 5 1 1.3036 1.4346 29.586 6 Median 1.3043 1.4509 4.2511 5 0 Median 0.84627 0.70219 NaN 1 0 Median 552020000 241640000 310380000 532220000 230950000 301270000 19800000 10696000 9103700 9592 2119 9842;9843 25388;25389;25390;25391;25392;25393 39760;39761;39762;39763;39764;39765;39766;39767;39768 39761 1942 9 MRVNVDPEDLIPK FERCLDLYLCPRQRKMRVNVDPEDLIPKLP RKMRVNVDPEDLIPKLPRPRDLQPFPTCQA K M R P K L 0 1 1 2 0 0 1 0 0 1 1 1 1 0 2 0 0 0 0 2 0 0 13 1 1524.797 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 379 391 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.022559 51.092 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9593 1726 9844 25394;25395 39769;39770 39769 1563 2 MSAATVLSR GLEEVVQNLLETQGRMSAATVLSREPYMCA LETQGRMSAATVLSREPYMCAQCKTDFTCR R M S S R E 2 1 0 0 0 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 0 0 9 0 934.4906 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 404 412 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.00051031 90.64 1 1.1887 1.2433 NaN 1 Median 1.1887 1.2433 NaN 1 0 Median NaN NaN NaN 0 0 Median 10756000 5351100 5405300 10756000 5351100 5405300 0 0 0 9594 229 9845 25396 39771 39771 170 1 MSATFIGNSTAIQELFK NVKTAVCDIPPRGLKMSATFIGNSTAIQEL ATFIGNSTAIQELFKRISEQFTAMFRRKAF K M S F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 17 0 1856.9342 Q8IZ29;P68371;Q8N6N5;B3KML9;Q96HX0;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2 Q8IZ29 363 379 TUBB2C;TUBB4B;TUBB2A;TUBB2B;DKFZp566F223 Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2 0.00033688 46.069 1 0.81892 0.67361 NaN 1 Median NaN NaN NaN 0 0 Median 0.81892 0.67361 NaN 1 0 Median 10129000 5439800 4689100 0 0 0 10129000 5439800 4689100 9595 1660;1723 9846 25397 39772 39772 1441 1 MSAVSQDAIEDSR SDKAYGRKVLTWDGKMSAVSQDAIEDSRQA GKMSAVSQDAIEDSRQARTETVVDDWDEEF K M S S R Q 2 1 0 2 0 1 1 0 0 1 0 0 1 0 0 3 0 0 0 1 0 0 13 0 1407.63 A0A024R8V6;Q9P275;B3KMW2;K7EIH0 A0A024R8V6 1049 1061 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 4.1286E-14 134.3 3 2 1.3098 1.1425 21.687 3 Median 1.6233 1.5946 NaN 1 0 Median 1.2899 1.1012 5.2054 2 0 Median 24447000 12752000 11695000 18491000 10646000 7844800 5955700 2105700 3850000 9596 260 9847 25398;25399;25400;25401;25402 39773;39774;39775;39776;39777 39775 196 5 MSFIAPNLSIIIGASTAAK LNASKHRIYEYVESRMSFIAPNLSIIIGAS APNLSIIIGASTAAKIMGVAGGLTNLSKMP R M S A K I 4 0 1 0 0 0 0 1 0 4 1 1 1 1 1 3 1 0 0 0 0 0 19 0 1904.0441 B4DWW8;E7EVX8;Q8WWY3;E7EU94;E7ESX0;E7EN72 B4DWW8 212 230 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 0.00014952 43.991 1 2.2216 2.2111 NaN 1 Median 2.2216 2.2111 NaN 1 0 Median NaN NaN NaN 0 0 Median 6288800 2153600 4135200 6288800 2153600 4135200 0 0 0 9597 1046 9848 25403 39778 39778 821 1 MSGECAPNVSVSVSTSHTTISGGGSR EIATYRTLLEGEESRMSGECAPNVSVSVST SVSTSHTTISGGGSRGGGGGGYGSGGSSYG R M S S R G 1 1 1 0 1 0 1 4 1 1 0 0 1 0 1 7 3 0 0 3 0 0 26 0 2564.1595 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 493 518 KRT1 Keratin, type II cytoskeletal 1 no no 3 1.6636E-48 143.05 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 454060000 454060000 0 378850000 378850000 0 75205000 75205000 0 + 9598 1308;1309 9849;9850 25404;25405;25406;25407 39779;39780;39781;39782 39779 992 4 MSGGWELELNGTEAK IKEERKIQKHKTLPKMSGGWELELNGTEAK MSGGWELELNGTEAKLVRKVAGEKITVTFN K M S A K L 1 0 1 0 0 0 3 3 0 0 2 1 1 0 0 1 1 1 0 0 0 0 15 0 1620.7454 A8K651;Q07021;I3L3Q7;I3L3B0 A8K651 105 119 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 2 3.9099E-05 83.617 1 2.1042 2.1008 NaN 1 Median 2.1042 2.1008 NaN 1 0 Median NaN NaN NaN 0 0 Median 15042000 5540600 9501900 15042000 5540600 9501900 0 0 0 9599 756 9851 25408 39783 39783 586 1 MSGLIVGSAFGPIK PSVLFWWEYEHNNRKMSGLIVGSAFGPIKI KMSGLIVGSAFGPIKILPVNLKAVKGYFTL K M S I K I 1 0 0 0 0 0 0 3 0 2 1 1 1 1 1 2 0 0 0 1 0 0 14 0 1375.7534 Q9UKN8;Q05CN7 Q9UKN8 328 341 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.0061464 54.784 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9600 2107 9852 25409 39784 39784 1 MSLLLVYGSWFQPTIER PKPIPILAAGFCSDKMSLLLVYGSWFQPTI LLLVYGSWFQPTIERVALNSREPHMCLVRD K M S E R V 0 1 0 0 0 1 1 1 0 1 3 0 1 1 1 2 1 1 1 1 0 0 17 0 2039.055 Q15061;C9IZK7 Q15061 345 361 WDR43 WD repeat-containing protein 43 yes no 2 6.2902E-06 91.914 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9601 1752 9853 25410 39785 39785 1605 1 MSLLQLVEILQSK LSDKKRPETVATQFKMSLLQLVEILQSKEP FKMSLLQLVEILQSKEPAYVRCIKPNDAKQ K M S S K E 0 0 0 0 0 2 1 0 0 1 4 1 1 0 0 2 0 0 0 1 0 0 13 0 1500.8586 F5H6E2;B7Z3E5;O00159;B7Z9C0;A1L180;D3DTH7 F5H6E2 582 594 MYO1C Unconventional myosin-Ic no no 2 2.0015E-72 206.1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9602 1088;1189 9854 25411 39786 39786 833 1 MSMEISIHR IVPKSLLLKPHQREKMSMEISIHRSLAHQH PHQREKMSMEISIHRSLAHQHVVGFHGFFE K M S H R S 0 1 0 0 0 0 1 0 1 2 0 0 2 0 0 2 0 0 0 0 0 0 9 0 1102.5263 P53350;B4E083;Q58A51;I3L387 P53350 98 106 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1 yes no 2 0.025665 42.075 2 2.774 2.7725 19.982 2 Median 2.774 2.7725 19.982 2 0 Median NaN NaN NaN 0 0 Median 15701000 3811100 11890000 15701000 3811100 11890000 0 0 0 9603 1604 9855 25412;25413 39787;39788 39787 1391;1392 0 MSNALAIQVDSEGK ______________________________ KMSNALAIQVDSEGKIKYDAIARQGQSKDK K M S G K I 2 0 1 1 0 1 1 1 0 1 1 1 1 0 0 2 0 0 0 1 0 0 14 0 1461.7133 B7Z9X2;B4DY36;A0A024R6E3;Q6I9S2;Q13573;G3V3A4;B4DEG7;Q0D2M5;Q6P151;G3V5R3 B7Z9X2 7 20 SNW1 SNW domain-containing protein 1 yes no 2 7.8493E-07 100.19 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8711600 0 8711600 8711600 0 8711600 0 0 0 9604 203 9856 25414;25415 39789;39790 39790 161 2 MSQEEVNVFR PFRKNFYVEVPELAKMSQEEVNVFRLEMEG PELAKMSQEEVNVFRLEMEGITVKGKGCPK K M S F R L 0 1 1 0 0 1 2 0 0 0 0 0 1 1 0 1 0 0 0 2 0 0 10 0 1237.5761 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 345 354 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.042526 76.064 2 1.7483 1.7777 4.9424 2 Median 1.7483 1.7777 4.9424 2 0 Median NaN NaN NaN 0 0 Median 38491000 14583000 23908000 38491000 14583000 23908000 0 0 0 9605 511 9857 25416;25417 39791;39792 39791 358 0 MSQVAPSLSALIGEAVGAR LSEYRQSLHTYLRSKMSQVAPSLSALIGEA APSLSALIGEAVGARLIAHAGSLTNLAKYP K M S A R L 4 1 0 0 0 1 1 2 0 1 2 0 1 0 1 3 0 0 0 2 0 0 19 0 1855.9826 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 289 307 NOP56 Nucleolar protein 56 yes no 2 6.6628E-17 114.74 4 1.245 1.4411 53.915 4 Linear 1.245 1.4411 53.915 4 0 Linear NaN NaN NaN 0 0 Median 424650000 206550000 218100000 424650000 206550000 218100000 0 0 0 9606 785 9858;9859 25418;25419;25420;25421 39793;39794;39795;39796;39797;39798;39799;39800 39794 621 8 MSSALESVTVSDRPLGVSITK PELRFAIQNKHLCHRMSSALESVTVSDRPL SVTVSDRPLGVSITKAEVAPEEDERKKRRR R M S T K A 1 1 0 1 0 0 1 1 0 1 2 1 1 0 1 5 2 0 0 3 0 0 21 1 2176.1409 A0A0A0MRJ2;Q5VTZ4;P18847;Q7Z567 A0A0A0MRJ2 30 50 ATF3 Cyclic AMP-dependent transcription factor ATF-3 yes no 3 7.3296E-16 101.17 2 1 0.89411 1.0387 13.163 3 Median 0.86885 1.0181 2.8247 2 0 Median 1.5152 1.2755 NaN 1 0 Median 81025000 42063000 38963000 76769000 40302000 36467000 4256500 1760600 2496000 9607 466 9860;9861 25422;25423;25424 39801;39802;39803;39804 39803 325 4 MSSFVEPPDIVK KRVLNVTNLEFSDTRMSSFVEPPDIVKKLS DTRMSSFVEPPDIVKKLSWVENYWPDDALL R M S V K K 0 0 0 1 0 0 1 0 0 1 0 1 1 1 2 2 0 0 0 2 0 0 12 0 1347.6744 O75151 O75151 202 213 PHF2 Lysine-specific demethylase PHF2 yes yes 2 6.6577E-10 117.7 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12620000 0 12620000 12620000 0 12620000 0 0 0 9608 1400 9862 25425;25426 39805;39806 39805 1077 2 MSSTFIGNSTAIQELFK NVKVAVCDIPPRGLKMSSTFIGNSTAIQEL STFIGNSTAIQELFKRISEQFTAMFRRKAF K M S F K R 1 0 1 0 0 1 1 1 0 2 1 1 1 2 0 3 2 0 0 0 0 0 17 0 1872.9291 Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92 Q9BV28 319 335 TUBB3 Tubulin beta-3 chain yes no 2 0.0031813 42.789 1 1 0.75503 0.60304 NaN 1 Median NaN NaN NaN 0 0 Median 0.75503 0.60304 NaN 1 0 Median 16973000 5300300 11673000 7816400 0 7816400 9156700 5300300 3856400 9609 502 9863;9864 25427;25428 39807;39808 39807 352 2 MSSYAFFVQTCR ______________________________ RGKMSSYAFFVQTCREEHKKKHPDSSVNFA K M S C R E 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 2 1 0 1 1 0 0 12 0 1495.6588 Q5U071;P26583;D6R9A6;Q9NYD7;Q75MM1;Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;B2RPK0;P09429 Q5U071 13 24 HMGB2;HMG1;WUGSC:H_NH0244E06.1;HMGB1;HMGB1P1 High mobility group protein B2;Putative high mobility group protein B1-like 1;High mobility group protein B1 no no 2 6.6194E-06 106.35 2 2 0.20285 0.18803 95.668 2 Median 0.35792 0.36983 NaN 1 0 Median 0.11497 0.095593 NaN 1 0 Median 69294000 58559000 10735000 53564000 43812000 9752000 15730000 14747000 982590 9610 1521;392 9865 25429;25430;25431;25432 39809;39810;39811;39812 39809 284 4 MSTEEIIQR WDEAEQDGIGEEVLKMSTEEIIQRTRLLDS GEEVLKMSTEEIIQRTRLLDSEIKLLDVDP K M S Q R T 0 1 0 0 0 1 2 0 0 2 0 0 1 0 0 1 1 0 0 0 0 0 9 0 1105.5438 E9PM69;R4GNH3;A0A140VK42;P17980;A8K781;E9PKD5;E9PMD8;E9PN50;E9PLG2 E9PM69 36 44 PSMC3 26S protease regulatory subunit 6A yes no 2 0.0016668 69.825 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2957400 0 2957400 2957400 0 2957400 0 0 0 9611 617 9866 25433;25434 39813;39814 39814 468 2 MSVEADINGLR ADDFRTKYETELNLRMSVEADINGLRRVLD LNLRMSVEADINGLRRVLDELTLARADLEM R M S L R R 1 1 1 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 1 0 0 11 0 1203.5918 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;B4DE59;K7EMS3 CON__P02533 212 222 KRT14;KRT19 Keratin, type I cytoskeletal 14 no no 2 2.6418E-05 94.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5510700 5510700 0 5510700 5510700 0 0 0 0 + 9612 1150;964 9867 25435 39815 39815 777 1 MSVQPTVSLGGFEITPPVVLR NYEGSPIKVTLATLKMSVQPTVSLGGFEIT VSLGGFEITPPVVLRLKCGSGPVHISGQHL K M S L R L 0 1 0 0 0 1 1 2 0 1 2 0 1 1 3 2 2 0 0 4 0 0 21 0 2226.2082 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;E5RI98;Q9NX34 A0A0S2Z4G7 81 101 NPM1 Nucleophosmin no no 2 1.055E-28 129.38 6 2 1.0036 1.1297 62.201 8 Median 1.1978 1.3757 31.113 6 0 Median 0.49506 0.42826 43.003 2 0 Median 2442100000 1061000000 1381100000 2197000000 886450000 1310500000 245140000 174560000 70574000 9613 559;1213;2078 9868;9869 25436;25437;25438;25439;25440;25441;25442;25443 39816;39817;39818;39819;39820;39821;39822;39823;39824;39825;39826;39827;39828;39829;39830;39831 39830 417 16 MTDQEAIQDLWQWR KVEAKFINYVKNCFRMTDQEAIQDLWQWRK RMTDQEAIQDLWQWRKSL____________ R M T W R K 1 1 0 2 0 3 1 0 0 1 1 0 1 0 0 0 1 2 0 0 0 0 14 0 1818.8359 A0A0S2Z4G7;A0A0S2Z491;P06748;Q9BTI9 A0A0S2Z4G7 249 262 NPM1 Nucleophosmin yes no 2 2.1552E-57 188.96 4 5 0.84395 0.76014 57.097 6 Median 1.2317 1.0103 21.315 3 0 Plateau 0.43831 0.37569 26.821 3 0 Median 189430000 113010000 76416000 110710000 61853000 48859000 78714000 51157000 27557000 9614 559 9870;9871 25444;25445;25446;25447;25448;25449;25450;25451;25452 39832;39833;39834;39835;39836;39837;39838;39839;39840;39841;39842;39843;39844 39840 418 13 MTEIQTPENTPR ATFIGLDKMAVWAKKMTEIQTPENTPRLFD AKKMTEIQTPENTPRLFDLVKVKDEKIRQA K M T P R L 0 1 1 0 0 1 2 0 0 1 0 0 1 0 2 0 3 0 0 0 0 0 12 0 1415.6715 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 681 692 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.0196E-74 225.01 2 3 1.1738 1.2428 9.8456 4 Linear 1.081 1.2336 4.2519 2 0 Median 1.2541 1.0461 0.88356 2 0 Median 302120000 144650000 157470000 262360000 123890000 138470000 39756000 20763000 18993000 9615 2070 9872;9873 25453;25454;25455;25456;25457 39845;39846;39847;39848;39849;39850;39851;39852;39853;39854 39848 1902 10 MTEVLDHEER YERDMVVNLFHELEKMTEVLDHEERVISNL HELEKMTEVLDHEERVISNLSKVLEMVEEC K M T E R V 0 1 0 1 0 0 3 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 10 0 1257.566 Q8N523;A0A024R1I7;Q9UBB9;B4DPE5 Q8N523 359 368 TFIP11 Tuftelin-interacting protein 11 yes no 2 0.0010509 67.704 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9616 77 9874 25458 39855 39855 47 1 MTGCLEFSEAGK SAFQSAFHSIKENEKMTGCLEFSEAGKESE NEKMTGCLEFSEAGKESEMTDLTRKEGLSA K M T G K E 1 0 0 0 1 0 2 2 0 0 1 1 1 1 0 1 1 0 0 0 0 0 12 0 1328.5741 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 146 157 CDCA2 Cell division cycle-associated protein 2 yes no 2 8.3525E-05 91.549 1 0.81818 0.85167 NaN 1 Median 0.81818 0.85167 NaN 1 0 Median NaN NaN NaN 0 0 Median 12364000 3871400 8493100 12364000 3871400 8493100 0 0 0 9617 1233 9875 25459 39856 39856 949 1 MTGHQALINQVLFSPDSR LFLWSPAEDKKPLTRMTGHQALINQVLFSP HQALINQVLFSPDSRIVASASFDKSIKLWD R M T S R I 1 1 1 1 0 2 0 1 1 1 2 0 1 1 1 2 1 0 0 1 0 0 18 0 2013.0102 B4E074;Q9NVX2;A0A0A0MRH0;B4E303;K7EN33 B4E074 344 361 NLE1 Notchless protein homolog 1 yes no 3 7.1017E-05 59.512 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9618 1060 9876 25460 39857 39857 825 1 MTHNLLLNYGLYR YYYGQGHPMKPHRIRMTHNLLLNYGLYRKM IRMTHNLLLNYGLYRKMEIYRPHKANAEEM R M T Y R K 0 1 2 0 0 0 0 1 1 0 4 0 1 0 0 0 1 0 2 0 0 0 13 0 1606.829 Q6IT96;Q13547;B5BU61;Q5TEE2;B4DSK9;Q92769;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;H3BM24;E5RK19 Q6IT96 37 49 HDAC1;HDAC2 Histone deacetylase;Histone deacetylase 1;Histone deacetylase 2 no no 2;3 2.4751E-09 120.09 4 4 1.1579 1.0895 24.9 7 Median 1.1579 1.25 12.425 3 0 Median 1.1012 0.93156 30.641 4 0 Median 229680000 114190000 115490000 201870000 100670000 101200000 27813000 13525000 14288000 9619 1715;1952 9877;9878 25461;25462;25463;25464;25465;25466;25467;25468 39858;39859;39860;39861;39862;39863;39864;39865;39866;39867;39868;39869;39870;39871 39863 1547 14 MTLDDFR TVGNNKTLLDIDNTRMTLDDFRIKFEMEQN LLDIDNTRMTLDDFRIKFEMEQNLRQGVDA R M T F R I 0 1 0 2 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 7 0 896.4062 CON__P35527;P35527;K7EQQ3 CON__P35527 234 240 KRT9 Keratin, type I cytoskeletal 9 yes no 2 8.4835E-05 125.08 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 500150000 500150000 0 494690000 494690000 0 5462100 5462100 0 + 9620 1165 9879 25469;25470;25471;25472;25473 39872;39873;39874;39875;39876 39872 879 5 MTLQLIK RAQQSAVRLTEIGPRMTLQLIKVQEGVGEG RLTEIGPRMTLQLIKVQEGVGEGKVMFHSF R M T I K V 0 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 7 0 845.50446 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 279 285 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.016424 67.035 6 1.5082 1.5299 58.454 4 Linear 1.5082 1.5299 58.454 4 0 Linear NaN NaN NaN 0 0 Median 101710000 40680000 61031000 101710000 40680000 61031000 0 0 0 9621 493 9880;9881 25474;25475;25476;25477;25478;25479 39877;39878;39879;39880;39881;39882;39883 39881 341 7 MTLVASEDYGDTLAAIQGLLK FVANVEEEEAWINEKMTLVASEDYGDTLAA EDYGDTLAAIQGLLKKHEAFETDFTVHKDR K M T L K K 3 0 0 2 0 1 1 2 0 1 4 1 1 0 0 1 2 0 1 1 0 0 21 0 2208.1348 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16;Q14917 A0A0D9SF54 1875 1895 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 1.2243E-15 102.73 2 1.7647 1.8233 6.4378 2 Median 1.7647 1.8233 6.4378 2 0 Median NaN NaN NaN 0 0 Median 51324000 16825000 34499000 51324000 16825000 34499000 0 0 0 9622 523 9882 25480;25481 39884;39885;39886 39885 388 3 MTPSYEIR GDVKNFLYAWCGKRKMTPSYEIRAVGNKNR AWCGKRKMTPSYEIRAVGNKNRQKFMCEVQ K M T I R A 0 1 0 0 0 0 1 0 0 1 0 0 1 0 1 1 1 0 1 0 0 0 8 0 995.47462 Q08211;Q58F26;Q6PJK6 Q08211 17 24 DHX9 ATP-dependent RNA helicase A yes no 2 0.02728 41.448 1 1.3165 1.1221 NaN 1 Median NaN NaN NaN 0 0 Median 1.3165 1.1221 NaN 1 0 Median 5545200 2307200 3238000 0 0 0 5545200 2307200 3238000 9623 1691 9883 25482 39887 39887 1517 1 MTQNPNYYNLQGISHR QDAVDYLTWTFLYRRMTQNPNYYNLQGISH TQNPNYYNLQGISHRHLSDHLSELVEQTLS R M T H R H 0 1 3 0 0 2 0 1 1 1 1 0 1 0 1 1 1 0 2 0 0 0 16 0 1934.9057 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5;Q7L5W4 O75643 1764 1779 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 3.6067E-13 122.46 2 1.4193 1.4302 NaN 1 Median 1.4193 1.4302 NaN 1 0 Median NaN NaN NaN 0 0 Median 29132000 7233600 21899000 29132000 7233600 21899000 0 0 0 9624 1411 9884 25483;25484 39888;39889 39889 1098 2 MTTETASEDDNFGTAQSNK LLGDLLFHISGVTGKMTTETASEDDNFGTA TASEDDNFGTAQSNKAIITALGVERRNRVL K M T N K A 2 0 2 2 0 1 2 1 0 0 0 1 1 1 0 2 4 0 0 0 0 0 19 0 2045.8484 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1853 1871 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 3.3454E-12 102.73 1 2.3757 2.3393 NaN 1 Median 2.3757 2.3393 NaN 1 0 Median NaN NaN NaN 0 0 Median 8601300 2888700 5712600 8601300 2888700 5712600 0 0 0 9625 1205 9885 25485 39890;39891 39890 914 2 MTVEYVYER SNPVCTLNDTAQFNRMTVEYVYERMTGLRW TAQFNRMTVEYVYERMTGLRWKCKVILESE R M T E R M 0 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 1 0 2 2 0 0 9 0 1188.5485 Q6NUN2;A3F769;O15226;A3F768;A2I829 Q6NUN2 464 472 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.00030326 96.624 2 1.2568 1.2665 NaN 1 Median 1.2568 1.2665 NaN 1 0 Median NaN NaN NaN 0 0 Median 6495600 3103800 3391900 6495600 3103800 3391900 0 0 0 9626 655 9886 25486;25487 39892;39893 39893 513 2 MVADLVENSYSISVPIFK GPKNEVEKCTKYMQKMVADLVENSYSISVP DLVENSYSISVPIFKQFHKNIIGKGGANIK K M V F K Q 1 0 1 1 0 0 1 0 0 2 1 1 1 1 1 3 0 0 1 3 0 0 18 0 2011.0336 A0A024R4E5;Q00341;B2R5V9;H0Y394;Q6ZS03;Q96CF6;Q6ZN49;H7BZC3 A0A024R4E5 573 590 HDLBP Vigilin yes no 2 3.7428E-05 65.842 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2909100 0 2909100 2909100 0 2909100 0 0 0 9627 154 9887 25488 39894 39894 131 1 MVDPEKPQLGMIDR CMEKIEKGQVRLSKKMVDPEKPQLGMIDRW KMVDPEKPQLGMIDRWYHPGCFVKNREELG K M V D R W 0 1 0 2 0 1 1 1 0 1 1 1 2 0 2 0 0 0 0 1 0 0 14 1 1627.8062 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0 A0A024R3T8 143 156 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 0.0020429 43.813 2 0.91215 1.0734 NaN 1 Median 0.91215 1.0734 NaN 1 0 Median NaN NaN NaN 0 0 Median 79840000 42923000 36916000 79840000 42923000 36916000 0 0 0 9628 139 9888 25489;25490 39895;39896 39895 126;127 2 MVEDLISVGEEESFNLK LADNINLGDPSSMLKMVEDLISVGEEESFN EDLISVGEEESFNLKQKVTFHVILSVLVSC K M V L K Q 0 0 1 1 0 0 4 1 0 1 2 1 1 1 0 2 0 0 0 2 0 0 17 0 1937.9292 B2RWN5;Q9H583;Q5T3Q7;A2VDI1 B2RWN5 683 699 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 6.317E-07 88.187 2 1.2754 1.2856 4.5496 2 Median 1.2754 1.2856 4.5496 2 0 Median NaN NaN NaN 0 0 Median 52015000 22405000 29610000 52015000 22405000 29610000 0 0 0 9629 897 9889 25491;25492 39897;39898;39899;39900;39901 39898 714 5 MVEMFLEYQNQISR AFAEKLSVKLKEEERMVEMFLEYQNQISRQ RMVEMFLEYQNQISRQNKLIQEKKDNLLKL R M V S R Q 0 1 1 0 0 2 2 0 0 1 1 0 2 1 0 1 0 0 1 1 0 0 14 0 1786.8382 Q9HBM1;C9JW94 Q9HBM1 57 70 SPC25 Kinetochore protein Spc25 yes no 2 0.0083357 51.286 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9630 2050 9890 25493 39902 39902 1882;1883 1 MVFINNIALAQIK QKMLNGLEDSIGLSKMVFINNIALAQIKNN SKMVFINNIALAQIKNNNIDAAIENIENML K M V I K N 2 0 2 0 0 1 0 0 0 3 1 1 1 1 0 0 0 0 0 1 0 0 13 0 1473.8378 E5KNY5;P42704 E5KNY5 1177 1189 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00082749 56.729 1 2.7653 2.796 NaN 1 Median 2.7653 2.796 NaN 1 0 Median NaN NaN NaN 0 0 Median 8792500 2516100 6276400 8792500 2516100 6276400 0 0 0 9631 1207 9891 25494 39903 39903 924 1 MVHIDEEMGPK RSTFNDVEKMAAHMRMVHIDEEMGPKTDST AHMRMVHIDEEMGPKTDSTLSFDLTLQQGS R M V P K T 0 0 0 1 0 0 2 1 1 1 0 1 2 0 1 0 0 0 0 1 0 0 11 0 1284.5842 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 533 543 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00048966 80.688 2 1.2077 1.2379 1.5975 2 Median 1.2077 1.2379 1.5975 2 0 Median NaN NaN NaN 0 0 Median 25425000 11111000 14314000 25425000 11111000 14314000 0 0 0 9632 878 9892 25495;25496 39904;39905;39906;39907 39904 687;688 4 MVIITGPPEAQFK SIKIAPAEAPDAKVRMVIITGPPEAQFKAQ VRMVIITGPPEAQFKAQGRIYGKIKEENFV R M V F K A 1 0 0 0 0 1 1 1 0 2 0 1 1 1 2 0 1 0 0 1 0 0 13 0 1429.7639 O00425;B4DKT5;Q9NZI8;D3DTW3;F8W930;Q9Y6M1 O00425 453 465 IGF2BP3;IGF2BP1;IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 2 no no 2 0.0012962 52.79 1 2 3.3829 3.4688 NaN 1 Median 3.3829 3.4688 NaN 1 0 Median NaN NaN NaN 0 0 Median 30772000 5807500 24964000 28547000 5807500 22739000 2225000 0 2225000 9633 1364;2087;1267 9893;9894 25497;25498;25499 39908;39909;39910;39911 39908 973 4 MVINHLEK ______________________________ ______________________________ K M V E K L 0 0 1 0 0 0 1 0 1 1 1 1 1 0 0 0 0 0 0 1 0 0 8 0 982.52699 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 4 11 CCT8 T-complex protein 1 subunit theta yes no 2 0.0042901 71.491 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11545000 0 11545000 11545000 0 11545000 0 0 0 9634 1592 9895 25500 39912 39912 1375 1 MVIPALIQSDSGDSIEVSR LDDTYSFQVINKTVKMVIPALIQSDSGDSI ALIQSDSGDSIEVSRNVEEIVVKIISVFVD K M V S R N 1 1 0 2 0 1 1 1 0 3 1 0 1 0 1 4 0 0 0 2 0 0 19 0 2016.0198 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1352 1370 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 9.003E-24 136.99 4 5 1.2997 1.0812 20.442 7 Median 1.4231 1.5079 4.541 2 0 Median 1.2862 1.0649 9.8325 5 0 Median 156700000 62772000 93931000 85917000 30237000 55680000 70787000 32536000 38251000 9635 897 9896;9897 25501;25502;25503;25504;25505;25506;25507;25508;25509 39913;39914;39915;39916;39917;39918;39919;39920;39921;39922;39923;39924;39925;39926;39927;39928;39929;39930;39931 39918 715 19 MVLDHLVIQR KGSVEEDILERAKKKMVLDHLVIQRMDTTG RAKKKMVLDHLVIQRMDTTGKTVLHTGSAP K M V Q R M 0 1 0 1 0 1 0 0 1 1 2 0 1 0 0 0 0 0 0 2 0 0 10 0 1222.6856 O14646;A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 O14646 930 939 CHD1;CHD2 Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 2 no no 2 0.012814 51.193 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9636 1366;354 9898 25510 39932 39932 265 1 MVLLFEILR FVTDADAEVLEHSGKMVLLFEILRMAEEIG LEHSGKMVLLFEILRMAEEIGDKVLVFSQS K M V L R M 0 1 0 0 0 0 1 0 0 1 3 0 1 1 0 0 0 0 0 1 0 0 9 0 1132.6678 A4LAA3;P46100;B4DHH8;B4DLE1 A4LAA3 2020 2028 ATRX Transcriptional regulator ATRX yes no 2 0.00077644 83.265 2 1.1353 1.1612 9.1158 2 Median 1.1353 1.1612 9.1158 2 0 Median NaN NaN NaN 0 0 Median 11977000 6037500 5939300 11977000 6037500 5939300 0 0 0 9637 672 9899 25511;25512 39933;39934;39935;39936;39937 39937 524 5 MVLNESLK GIDRLRLDKFYMLMRMVLNESLKVLKMQGW KFYMLMRMVLNESLKVLKMQGWEERQIEEL R M V L K V 0 0 1 0 0 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 8 0 932.5001 Q6PJJ2;P56182;B4DZM3;Q53FR7 Q6PJJ2 129 136 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 0.007109 62.464 2 1.3927 1.5443 11.318 2 Median 1.3927 1.5443 11.318 2 0 Median NaN NaN NaN 0 0 Median 108180000 44223000 63954000 108180000 44223000 63954000 0 0 0 9638 1618 9900 25513;25514 39938;39939;39940 39938 1405 3 MVMIQDGPLPTGADK GGETIKQLQERTGVKMVMIQDGPLPTGADK MVMIQDGPLPTGADKPLRITGDAFKVQQAR K M V D K P 1 0 0 2 0 1 0 2 0 1 1 1 2 0 2 0 1 0 0 1 0 0 15 0 1571.7687 A0A024R8A7;Q96I24 A0A024R8A7 196 210 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 2 0.0013145 69.672 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9639 245 9901 25515;25516 39941;39942 39941 183;184 2 MVNHFIAEFK TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK DFDNRMVNHFIAEFKRKHKKDISENKRAVR R M V F K R 1 0 1 0 0 0 1 0 1 1 0 1 1 2 0 0 0 0 0 1 0 0 10 0 1234.6169 E9PN89;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;B4E1Q1;A8K7Q2 V9HW22 237 246 HSPA8;HEL-S-72p Heat shock cognate 71 kDa protein no no 2;3 6.9133E-17 159.83 3 1 1.7261 1.9394 7.2587 3 Median 1.7261 1.9394 7.2587 3 0 Median NaN NaN NaN 0 0 Median 299960000 105820000 194150000 297440000 103290000 194150000 2528000 2528000 0 9640 1467;1248 9902 25517;25518;25519;25520 39943;39944;39945;39946;39947;39948 39947 957 6 MVPAGMGAGLER RMGPAIERMGLSMERMVPAGMGAGLERMGP MERMVPAGMGAGLERMGPVMDRMATGLERM R M V E R M 2 1 0 0 0 0 1 3 0 0 1 0 2 0 1 0 0 0 0 1 0 0 12 0 1187.5791 M0QZM1;P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7 P52272 532 543 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.00041684 69.346 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81835000 0 81835000 81835000 0 81835000 0 0 0 9641 1599;1354 9903 25521 39949 39949 1022;1023 1 MVPFQVPEILR SGFAYHLFPRSRLEKMVPFQVPEILRTPLE RLEKMVPFQVPEILRTPLENLVLQAKIHMP K M V L R T 0 1 0 0 0 1 1 0 0 1 1 0 1 1 2 0 0 0 0 2 0 0 11 0 1327.7322 H7BXY3;A0A024R2T6;Q7L2E3;Q6W6M7 H7BXY3 775 785 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0029652 54.982 2 1.4307 1.464 9.6791 2 Median 1.4307 1.464 9.6791 2 0 Median NaN NaN NaN 0 0 Median 24261000 10111000 14150000 24261000 10111000 14150000 0 0 0 9642 122 9904 25522;25523 39950;39951;39952;39953 39950 107 4 MVQQLQEDVDMEDAP IRAPLAGKGKQLEEKMVQQLQEDVDMEDAP MVQQLQEDVDMEDAP_______________ K M V A P - 1 0 0 3 0 3 2 0 0 0 1 0 2 0 1 0 0 0 0 2 0 0 15 0 1746.7441 B3KP47;A0A024R5U8;Q9UHA3 B3KP47 149 163 C15orf15;RSL24D1 Probable ribosome biogenesis protein RLP24 yes no 2 0.0023427 48.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9606000 0 0 9606000 0 0 0 0 0 9643 188 9905 25524 39954 39954 154;155 1 MVSDEYEQLSSEALEAAR ______________________________ DEYEQLSSEALEAARICANKYMVKSCGKDG - M V A R I 3 1 0 1 0 1 4 0 0 0 2 0 1 0 0 3 0 0 1 1 0 0 18 0 2026.9154 F8W7C6 F8W7C6 1 18 RPL10 yes yes 2 0.00020598 45.28 3 1.0115 0.86937 3.9043 2 Median NaN NaN NaN 0 0 Median 1.0115 0.86937 3.9043 2 0 Median 8994100 4397400 4596700 0 0 0 8994100 4397400 4596700 9644 1266 9906;9907 25525;25526;25527 39955;39956;39957 39956 971 3 MVSEEMEEQVHSIR PTRPSCPAVAEIPLRMVSEEMEEQVHSIRG RMVSEEMEEQVHSIRGSSSANPVNSVRRKS R M V I R G 0 1 0 0 0 1 4 0 1 1 0 0 2 0 0 2 0 0 0 2 0 0 14 0 1702.7655 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;Q5JR89 A8K3S3 164 177 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.0011835 72.652 3 0.52063 0.51737 NaN 1 Median 0.52063 0.51737 NaN 1 0 Median NaN NaN NaN 0 0 Median 8200500 5998200 2202300 8200500 5998200 2202300 0 0 0 9645 626 9908 25528;25529;25530 39958;39959;39960 39959 485;486 3 MVSSYVGENAEFER NFGLGLLLRSKQIKRMVSSYVGENAEFERQ RMVSSYVGENAEFERQYLSGELEVELTPQG R M V E R Q 1 1 1 0 0 0 3 1 0 0 0 0 1 1 0 2 0 0 1 2 0 0 14 0 1616.7141 Q6IAV5;A0A024R040;P55809;A1E286 Q6IAV5 111 124 OXCT;OXCT1 Succinyl-CoA:3-ketoacid-coenzyme A transferase;Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 2 0.0016722 55.401 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2080500 0 2080500 2080500 0 2080500 0 0 0 9646 35 9909 25531;25532 39961;39962;39963 39962 20 3 MVVPAALK KVFDGIPPPYDKKKRMVVPAALKVVRLKPT PYDKKKRMVVPAALKVVRLKPTRKFAYLGR R M V L K V 2 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 8 0 827.4939 Q53H34;P40429;Q9BSQ6;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q6NVV1 Q53H34 118 125 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 0.0037788 81.381 1 1.1607 1.3485 NaN 1 Median 1.1607 1.3485 NaN 1 0 Median NaN NaN NaN 0 0 Median 230290000 110110000 120180000 230290000 110110000 120180000 0 0 0 9647 1558 9910 25533 39964 39964 1309 1 MVVPGLDGAQIPR LVQALQTKVTQQGLKMVVPGLDGAQIPRDP LKMVVPGLDGAQIPRDPSQQELPRLLSAAC K M V P R D 1 1 0 1 0 1 0 2 0 1 1 0 1 0 2 0 0 0 0 2 0 0 13 0 1351.7282 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1159 1171 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0019192 61.353 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6045200 6045200 0 6045200 6045200 0 0 0 0 9648 587 9911 25534;25535;25536 39965;39966;39967 39967 439 3 MYAALGDPK KTPVNKKNIEKMYERMYAALGDPKAPGLGA EKMYERMYAALGDPKAPGLGAFRRKFIQTF R M Y P K A 2 0 0 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 0 0 0 9 0 964.4688 P78527 P78527 3613 3621 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.017993 50.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9649 1665 9912 25537 39968 39968 1458 1 MYEEHLK ADYESVNECMEGVCKMYEEHLKRMNPNSPS ECMEGVCKMYEEHLKRMNPNSPSITYDISQ K M Y L K R 0 0 0 0 0 0 2 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 7 0 948.4375 A0A024R6D4;P84090;G3V279 A0A024R6D4 35 41 ERH Enhancer of rudimentary homolog yes no 2 0.010141 81.613 2 1.099 1.1831 NaN 1 Median 1.099 1.1831 NaN 1 0 Median NaN NaN NaN 0 0 Median 45471000 27941000 17530000 45471000 27941000 17530000 0 0 0 9650 201 9913 25538;25539 39969;39970 39970 159 2 MYSDAFLNDSYLK EIRAICIEEIGIWMKMYSDAFLNDSYLKYV MKMYSDAFLNDSYLKYVGWTMHDKQGEVRL K M Y L K Y 1 0 1 2 0 0 0 0 0 0 2 1 1 1 0 2 0 0 2 0 0 0 13 0 1565.7072 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;Q6AI02;Q4LE48;Q8WVM7;Q68DW7;B1AMT4 B2R8Y6 249 261 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2;DKFZp686P168;STAG1 variant protein;STAG1;DKFZp781D1416 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.0062867 47.844 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3912900 0 3912900 3912900 0 3912900 0 0 0 9651 863 9914 25540 39971 39971 675 1 MYSEIDIK TGELYLDCVMHDLRKMYSEIDIKVADPVVT VMHDLRKMYSEIDIKVADPVVTFCETVVET K M Y I K V 0 0 0 1 0 0 1 0 0 2 0 1 1 0 0 1 0 0 1 0 0 0 8 0 997.47903 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 598 605 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.012646 54.776 1 1.2219 1.2197 NaN 1 Median 1.2219 1.2197 NaN 1 0 Median NaN NaN NaN 0 0 Median 14926000 7621400 7304600 14926000 7621400 7304600 0 0 0 9652 794 9915 25541 39972 39972 638 1 MYSTDDGVQFHAFGR SDRDPDGPLMCHTTKMYSTDDGVQFHAFGR MYSTDDGVQFHAFGRVLSGTIHAGQPVKVL K M Y G R V 1 1 0 2 0 1 0 2 1 0 0 0 1 2 0 1 1 0 1 1 0 0 15 0 1729.7519 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 432 446 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.00053974 45.79 1 0.99079 1.0304 NaN 1 Median 0.99079 1.0304 NaN 1 0 Median NaN NaN NaN 0 0 Median 10458000 5294800 5163400 10458000 5294800 5163400 0 0 0 9653 794 9916 25542 39973 39973 639 1 MYSYPAR SFDLDYDFQRDYYDRMYSYPARVPPPPPIA FQRDYYDRMYSYPARVPPPPPIARAVVPSK R M Y A R V 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 2 0 0 0 7 0 886.40072 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V555;G3V575;D3DPI2;G3V5V7;B4DQQ2;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V2D6 G3V4W0 123 129 HNRNPC;hCG_1641229 Heterogeneous nuclear ribonucleoproteins C1/C2 no no 2 0.0047956 113.08 2 2 0.93152 0.92306 76.206 4 Median 1.4052 1.6173 11.13 2 0 Median 0.525 0.45238 32.673 2 0 Median 186930000 79664000 107260000 176890000 72722000 104170000 10036000 6942000 3094300 9654 837;781 9917;9918 25543;25544;25545;25546 39974;39975;39976;39977;39978 39974 614 5 MYVPALIFGQLLTSSNYDDDEKK NNGKGIPVVEHKVEKMYVPALIFGQLLTSS GQLLTSSNYDDDEKKVTGGRNGYGAKLCNI K M Y K K V 1 0 1 3 0 1 1 1 0 1 3 2 1 1 1 2 1 0 2 1 0 0 23 1 2646.2887 P11388;J3KTB7 P11388 135 157 TOP2A DNA topoisomerase 2-alpha yes no 3 1.1874E-06 48.656 2 1.102 1.2899 1.0877 2 Median 1.102 1.2899 1.0877 2 0 Median NaN NaN NaN 0 0 Median 42840000 20578000 22262000 42840000 20578000 22262000 0 0 0 9655 1471 9919 25547;25548 39979;39980 39980 1207 2 NAADPISGDFK TTNVHSSEHAGRNGRNAADPISGDFKEISS RNGRNAADPISGDFKEISSVKLVSRYGELK R N A F K E 2 0 1 2 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 11 0 1133.5353 P46013 P46013 194 204 MKI67 Antigen KI-67 yes yes 2 6.4195E-13 147.75 2 2 2.5207 2.3959 21.35 4 Median 1.8044 2.0252 0.96655 2 0 Median 3.6388 2.9203 5.192 2 0 Median 268200000 91142000 177060000 229870000 82551000 147310000 38335000 8591100 29744000 9656 1569 9920 25549;25550;25551;25552 39981;39982;39983;39984;39985;39986;39987;39988 39981 8 NAAEELKPR HEFYNPQKKNYIFLRNAAEELKPRNKK___ NYIFLRNAAEELKPRNKK____________ R N A P R N 2 1 1 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 9 1 1026.5458 Q5J8M4;P78406 Q5J8M4 341 349 RAE1 mRNA export factor yes no 2 0.0020899 94.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16369000 0 16369000 16369000 0 16369000 0 0 0 9657 1664 9921 25553 39989 39989 1 NAAPPPSNTEAPPGETR FAIPMIHAVLQWQKRNAAPPPSNTEAPPGE APPPSNTEAPPGETRTEAGAETRSPGKAEA R N A T R T 3 1 2 0 0 0 2 1 0 0 0 0 0 0 5 1 2 0 0 0 0 0 17 0 1704.8067 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;Q59FS7;B4DM03 B4DKV2 169 185 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.001476 40.577 1 0.72602 0.75776 NaN 1 Median 0.72602 0.75776 NaN 1 0 Median NaN NaN NaN 0 0 Median 4937700 3163800 1773900 4937700 3163800 1773900 0 0 0 9658 993 9922 25554 39990;39991 39990 2 NAAQFLLSTNDK EIEEKINKIRWLPQKNAAQFLLSTNDKTIK PQKNAAQFLLSTNDKTIKLWKISERDKRPE K N A D K T 2 0 2 1 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 12 0 1320.6674 Q56VW8;A0A140VJT0;P63151 Q56VW8 106 117 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 2 1.4382E-06 97.456 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9659 609 9923 25555 39992 39992 1 NACIECSVNQNSIR ASSLQLITECFRCLRNACIECSVNQNSIRN RNACIECSVNQNSIRNLDTIGVAVDLILLF R N A I R N 1 1 3 0 2 1 1 0 0 2 0 0 0 0 0 2 0 0 0 1 0 0 14 0 1663.7406 Q9UBB4;Q7Z524 Q9UBB4 90 103 ATXN10 Ataxin-10 yes no 2 0.00012135 81.625 2 1.6002 1.6781 NaN 1 Median 1.6002 1.6781 NaN 1 0 Median NaN NaN NaN 0 0 Median 8450200 2122700 6327500 8450200 2122700 6327500 0 0 0 9660 2095 9924 25556;25557 39993;39994 39994 2 NADPILISLK GPEAALEAEEWFEGKNADPILISLKHGYIP WFEGKNADPILISLKHGYIPGKNRDLKVVK K N A L K H 1 0 1 1 0 0 0 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1082.6336 Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B4DMH3;B4E3S0;B7Z9V0;H0YHL7 Q53G58 382 391 CORO1C Coronin;Coronin-1C yes no 2 0.0038105 62.823 2 2 5.1032 4.7892 25.654 4 Median 3.4838 3.8505 2.9388 2 0 Median 7.4901 5.9895 3.713 2 0 Median 129610000 26827000 102780000 104490000 23557000 80936000 25113000 3270600 21843000 9661 340 9925 25558;25559;25560;25561 39995;39996;39997;39998;39999;40000 39995 6 NAEDVQHQILATESSNQEYVR LENSSLQEKAAKAGKNAEDVQHQILATESS HQILATESSNQEYVRMLLDLQTKSAKKKKK K N A V R M 2 1 2 1 0 3 3 0 1 1 1 0 0 0 0 2 1 0 1 2 0 0 21 0 2430.1411 Q05DM0;Q6NSC0;Q6PG44;B4DZK6;O75330 Q05DM0 475 495 HMMR Hyaluronan mediated motility receptor yes no 3 0.00015404 45.992 2 1 0.56498 0.53922 76.025 2 Median 0.30464 0.31499 NaN 1 0 Median 1.0478 0.92306 NaN 1 0 Median 12211000 9301800 2909100 10793000 8569200 2223400 1418200 732540 685670 9662 1057 9926 25562;25563;25564 40001;40002;40003;40004;40005 40004 5 NAENAIEALK LILVANAIVGVWQERNAENAIEALKEYEPE VWQERNAENAIEALKEYEPEMGKVYRQDRK R N A L K E 3 0 2 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1071.556 A0A0S2Z3L2;P16615;H7C5W9;Q8N3X5;Q7Z675;Q7Z6E5;O14983;H3BVB2 A0A0S2Z3L2 111 120 ATP2A2;DKFZp779O2152;DKFZp779G2251;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Calcium-transporting ATPase;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 0.00035698 91.867 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6962000 0 6962000 6962000 0 6962000 0 0 0 9663 554 9927 25565;25566 40006;40007 40006 2 NAEPLINLDVNNPDFK DLVPDNSKTADNATKNAEPLINLDVNNPDF AEPLINLDVNNPDFKAGVMALANLLQIQRH K N A F K A 1 0 4 2 0 0 1 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 16 0 1811.9054 Q5RLJ0;Q549M8;Q9Y224;G3V4C6;H0YJB9 Q5RLJ0 116 131 C14orf166 UPF0568 protein C14orf166 yes no 2 7.246E-34 157.5 2 2 1.1962 1.1272 11.546 4 Median 1.1309 1.2433 0.29058 2 0 Median 1.2662 1.0181 0.83593 2 0 Median 119370000 56460000 62913000 96125000 45680000 50445000 23248000 10780000 12468000 9664 1793 9928 25567;25568;25569;25570 40008;40009;40010;40011;40012;40013;40014;40015;40016;40017 40013 10 NAEQAATQLK TEKTGKLQQEEVQKKNAEQAATQLKVQLQE EVQKKNAEQAATQLKVQLQEAERRWEEVQS K N A L K V 3 0 1 0 0 2 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1072.5513 A0A024R663;Q86UP2 A0A024R663 478 487 KTN1 Kinectin yes no 2 0.018622 54.982 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1028100 1028100 0 0 0 0 1028100 1028100 0 9665 197 9929 25571 40018 40018 1 NAGNCLSPAVIVGLLK PKGTIQVITQGTSLKNAGNCLSPAVIVGLL AGNCLSPAVIVGLLKEASKQADVNLVNAKL K N A L K E 2 0 2 0 1 0 0 2 0 1 3 1 0 0 1 1 0 0 0 2 0 0 16 0 1624.8971 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 365 380 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 1.0349E-17 133.07 2 3.0622 3.358 2.6667 2 Median 3.0622 3.358 2.6667 2 0 Median NaN NaN NaN 0 0 Median 93642000 23226000 70415000 93642000 23226000 70415000 0 0 0 9666 1382 9930 25572;25573 40019;40020;40021;40022 40022 4 NAHLNALK LPAILDDTTLSGSDRNAHLNALKMNCYALI TLSGSDRNAHLNALKMNCYALIRLLESFET R N A L K M 2 0 2 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 879.49265 B3KMS0;Q15021;B4E0B7;A0PJ76;F5GZK7 B3KMS0 111 118 NCAPD2 Condensin complex subunit 1 yes no 2 3.0397E-14 171.47 2 2 1.162 1.1444 14.611 4 Median 0.87879 1.0196 0.58491 2 0 Median 1.567 1.3101 3.3854 2 0 Median 556010000 281330000 274680000 462160000 244710000 217460000 93846000 36620000 57226000 9667 908 9931 25574;25575;25576;25577 40023;40024;40025;40026;40027;40028;40029;40030 40026 8 NAHSTAIAGLTFLHR GLWDLEDKKLINQMRNAHSTAIAGLTFLHR NAHSTAIAGLTFLHREPLLVTNGADNALRI R N A H R E 3 1 1 0 0 0 0 1 2 1 2 0 0 1 0 1 2 0 0 0 0 0 15 0 1607.8532 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 274 288 WDR36 WD repeat-containing protein 36 yes no 3 0.00015659 55.975 2 1.2521 1.0847 2.7453 2 Median NaN NaN NaN 0 0 Median 1.2521 1.0847 2.7453 2 0 Median 80788000 35665000 45122000 0 0 0 80788000 35665000 45122000 9668 486 9932 25578;25579 40031;40032;40033;40034;40035 40035 5 NAIANASTLAEVER KKKGGPSPGDVEAIKNAIANASTLAEVERL KNAIANASTLAEVERLKGLLQSGQIPGRER K N A E R L 4 1 2 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1457.7474 Q53G61;Q53G21;P09661;H0YMA0;H0YLR3 Q53G61 206 219 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 4.8859E-21 142.08 2 2 1.2308 1.1473 0.17081 2 Median 1.1571 1.1459 NaN 1 0 Median 1.3092 1.1487 NaN 1 0 Median 27039000 8339000 18700000 22746000 7242700 15503000 4292700 1096300 3196400 9669 1461 9933 25580;25581;25582;25583 40036;40037;40038;40039 40037 4 NAIASDSEADSDTEVPK RGSDSEDEVLRMKRKNAIASDSEADSDTEV IASDSEADSDTEVPKDNSGTMDLFGGADDI K N A P K D 3 0 1 3 0 0 2 0 0 1 0 1 0 0 1 3 1 0 0 1 0 0 17 0 1747.7748 B4DNM0;Q8WVC0 B4DNM0 268 284 LEO1 RNA polymerase-associated protein LEO1 yes no 2 2.5065E-09 101.39 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12638000 0 12638000 12638000 0 12638000 0 0 0 9670 1012 9934 25584;25585;25586 40040;40041;40042 40042 3 NAIFHLLK DENICFSARDLSQIRNAIFHLLKNFLRLLP RDLSQIRNAIFHLLKNFLRLLPKFSLKEKP R N A L K N 1 0 1 0 0 0 0 0 1 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 954.56509 P42695;G3V1A9;E9PKK4 P42695 214 221 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.012282 67.981 1 2 1.7588 1.4534 17.32 3 Median 1.1445 1.1262 NaN 1 0 Median 1.8581 1.5093 5.3313 2 0 Median 40825000 17031000 23794000 19872000 9634100 10238000 20953000 7397000 13556000 9671 1565 9935 25587;25588;25589 40043;40044;40045;40046 40045 4 NAIMFGK PCDGEMIIVLHFHLKNAIMFGKKRHTDVQF IVLHFHLKNAIMFGKKRHTDVQFYTEVGEI K N A G K K 1 0 1 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 7 0 779.4 Q9Y5B9 Q9Y5B9 726 732 SUPT16H FACT complex subunit SPT16 yes yes 2 0.040941 42.474 1 1.0926 1.2265 NaN 1 Median 1.0926 1.2265 NaN 1 0 Median NaN NaN NaN 0 0 Median 76120000 37499000 38621000 76120000 37499000 38621000 0 0 0 9672 2148 9936 25590 40047 40047 1995 1 NAINIEELFQGISR YAESIGAIVVETSAKNAINIEELFQGISRQ KNAINIEELFQGISRQIPPLDPHENGNNGT K N A S R Q 1 1 2 0 0 1 2 1 0 3 1 0 0 1 0 1 0 0 0 0 0 0 14 0 1602.8366 Q53EY4;Q13636 Q53EY4 152 165 RAB31 Ras-related protein Rab-31 yes no 2 0.00013865 78.692 2 1.5282 1.5613 4.4398 2 Median 1.5282 1.5613 4.4398 2 0 Median NaN NaN NaN 0 0 Median 11636000 4817000 6819400 11636000 4817000 6819400 0 0 0 9673 1719 9937 25591;25592 40048;40049 40049 2 NAIQIVQQAVK GCCLDISSMIKEAQKNAIQIVQQAVKYVGQ EAQKNAIQIVQQAVKYVGQLAVLKGSKLHF K N A V K Y 2 0 1 0 0 3 0 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 11 0 1210.7034 Q15058 Q15058 1373 1383 KIF14 Kinesin-like protein KIF14 yes yes 2 0.018592 44.719 1 1.6359 1.6403 NaN 1 Median 1.6359 1.6403 NaN 1 0 Median NaN NaN NaN 0 0 Median 6857700 3036400 3821300 6857700 3036400 3821300 0 0 0 9674 1751 9938 25593 40050 40050 1 NAIVVLIPK KGIVSEEAYILFVRKNAIVVLIPKYGLEGT ILFVRKNAIVVLIPKYGLEGTVFFEEKDKP K N A P K Y 1 0 1 0 0 0 0 0 0 2 1 1 0 0 1 0 0 0 0 2 0 0 9 0 965.62735 Q49AG4;G3V1J5;A8QI98;Q9Y2L1;B3KM83;A0A024R643 Q49AG4 696 704 DIS3;KIAA1008 Exosome complex exonuclease RRP44 yes no 2 0.032386 45.081 1 1.9914 2.012 NaN 1 Median 1.9914 2.012 NaN 1 0 Median NaN NaN NaN 0 0 Median 13189000 4714400 8474800 13189000 4714400 8474800 0 0 0 9675 802 9939 25594 40051 40051 1 NALANPLYCPDYR PQTHVIENLHAAAYRNALANPLYCPDYRIG YRNALANPLYCPDYRIGKVTSEELHYFVQN R N A Y R I 2 1 2 1 1 0 0 0 0 0 2 0 0 0 2 0 0 0 2 0 0 0 13 0 1565.7297 H3BSJ9;H3BRG4;P22695;H3BP04 H3BSJ9 184 196 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 0.0044447 60.434 1 1 1.0406 0.91152 NaN 1 Median NaN NaN NaN 0 0 Median 1.0406 0.91152 NaN 1 0 Median 1348200 742420 605810 0 0 0 1348200 742420 605810 9676 1305 9940 25595;25596 40052;40053 40052 2 NALESYAFNMK YKAEDEVQRERVSAKNALESYAFNMKSAVE VSAKNALESYAFNMKSAVEDEGLKGKISEA K N A M K S 2 0 2 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 0 11 0 1286.5965 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNX1;B4E1T6 A8K5I0 540 550 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2 1.3234E-05 102.07 2 1.1403 1.2392 2.8412 2 Median 1.1403 1.2392 2.8412 2 0 Median NaN NaN NaN 0 0 Median 81870000 41100000 40770000 81870000 41100000 40770000 0 0 0 9677 533 9941 25597;25598 40054;40055 40055 394 2 NALFNLMFLDLDK AAESFTFLMRKVSDKNALFNLMFLDLDKHP DKNALFNLMFLDLDKHPEKVEGVGQLLFEM K N A D K H 1 0 2 2 0 0 0 0 0 0 4 1 1 2 0 0 0 0 0 0 0 0 13 0 1552.796 O75691 O75691 204 216 UTP20 Small subunit processome component 20 homolog yes yes 2 2.125E-07 112.15 2 2.008 2.0534 5.244 2 Median 2.008 2.0534 5.244 2 0 Median NaN NaN NaN 0 0 Median 18494000 5438900 13055000 18494000 5438900 13055000 0 0 0 9678 1412 9942 25599;25600 40056;40057;40058 40056 1105 3 NALLQLTDSQIADVAR VESVFDIMEMEDEERNALLQLTDSQIADVA ALLQLTDSQIADVARFCNRYPNIELSYEVV R N A A R F 3 1 1 2 0 2 0 0 0 1 3 0 0 0 0 1 1 0 0 1 0 0 16 0 1726.9214 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5;Q7L5W4;Q9P172 O75643 1994 2009 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 2.1867E-34 161.48 2 2 0.92585 0.91491 13.928 4 Median 0.89817 1.0092 3.0977 2 0 Median 0.98955 0.80406 7.4971 2 0 Median 142520000 75785000 66734000 117990000 63442000 54545000 24532000 12343000 12188000 9679 1411 9943 25601;25602;25603;25604 40059;40060;40061;40062;40063;40064;40065 40060 7 NALQEAEAR GSRYQGVRGIGRVFKNALQEAEARFREIKL IGRVFKNALQEAEARFREIKLQREARETQE K N A A R F 3 1 1 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1000.4938 O96028 O96028 960 968 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.00033904 101.54 1 2 1.5307 1.27 9.7539 3 Median 0.95925 1.1146 NaN 1 0 Median 1.5869 1.3089 4.2603 2 0 Median 81299000 37033000 44266000 63353000 30157000 33196000 17946000 6876000 11070000 9680 1435 9944 25605;25606;25607 40066;40067;40068;40069;40070 40066 5 NALSSALAQNTDLK QDASSSPSAQVIGLKNALSSALAQNTDLKE KNALSSALAQNTDLKERLRRIHAESLLLDS K N A L K E 3 0 2 1 0 1 0 0 0 0 3 1 0 0 0 2 1 0 0 0 0 0 14 0 1444.7522 Q9H4L5 Q9H4L5 382 395 OSBPL3 Oxysterol-binding protein-related protein 3 yes yes 2 0.01256 62.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9681 2032 9945 25608 40071 40071 1 NAPELDCLIR LVEILSYHNCDSQTRNAPELDCLIRLQAQN DSQTRNAPELDCLIRLQAQNIQQRHIVFLT R N A I R L 1 1 1 1 1 0 1 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 10 0 1199.5969 A0A024R363;A0A087X0F1;Q9UK61 A0A024R363 978 987 C3orf63;FAM208A Protein FAM208A no no 2 0.043945 37.191 1 1.41 1.2775 NaN 1 Median NaN NaN NaN 0 0 Median 1.41 1.2775 NaN 1 0 Median 2181300 1163200 1018100 0 0 0 2181300 1163200 1018100 9682 129;2105 9946 25609 40072 40072 1 NAPNDASYDAVR ENVNSLLPVFEEFLKNAPNDASYDAVRQSV FLKNAPNDASYDAVRQSVVVLMGSLAKHLD K N A V R Q 3 1 2 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 12 0 1291.5793 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1305 1316 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 3.5535E-06 111.06 2 1 1.7909 2.0599 45.945 3 Plateau 1.8431 2.0131 3.2507 2 0 Median 1.0878 0.90925 NaN 1 0 Median 79574000 32174000 47399000 76079000 30401000 45678000 3495200 1773700 1721500 9683 1205 9947 25610;25611;25612 40073;40074;40075;40076;40077;40078;40079 40073 7 NAPQISDGSEVVVVK PPKESKPKRMPRVKKNAPQISDGSEVVVVK NAPQISDGSEVVVVKEELNSSVAIADTALE K N A V K E 1 0 1 1 0 1 1 1 0 1 0 1 0 0 1 2 0 0 0 4 0 0 15 0 1540.8097 B3KPM8;Q8N5C6 B3KPM8 70 84 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.0099905 44.564 2 1.1971 1.2325 27.892 2 Median 1.1971 1.2325 27.892 2 0 Median NaN NaN NaN 0 0 Median 29974000 14111000 15862000 29974000 14111000 15862000 0 0 0 9684 921 9948 25613;25614 40080;40081 40081 2 NAQFIIISLR KNVSIVAFYIYEQTKNAQFIIISLRNNMFE YEQTKNAQFIIISLRNNMFEISDRLIGIYK K N A L R N 1 1 1 0 0 1 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1173.687 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1243 1252 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.8483E-09 125.82 2 2 1.238 1.2459 28.738 4 Median 0.84061 0.97968 3.1623 2 0 Median 1.858 1.6058 5.0614 2 0 Median 438630000 225020000 213610000 368320000 199050000 169270000 70308000 25969000 44340000 9685 2070 9949 25615;25616;25617;25618 40082;40083;40084;40085;40086;40087;40088;40089;40090;40091 40084 10 NASASFQELEDKK PVGRWFEAFVKRRNRNASASFQELEDKKEL NRNASASFQELEDKKELSEESEDEELQLEE R N A K K E 2 0 1 1 0 1 2 0 0 0 1 2 0 1 0 2 0 0 0 0 0 0 13 1 1465.7049 Q99543;Q6P5S9;H7C3L7;F2Z3H0;F2Z3N9 Q99543 45 57 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 2 0.00026647 87.667 2 2.239 2.569 8.0075 2 Median 2.239 2.569 8.0075 2 0 Median NaN NaN NaN 0 0 Median 21120000 7285100 13834000 21120000 7285100 13834000 0 0 0 9686 1993 9950 25619;25620 40092;40093 40093 2 NASLQDTLEVLQSSYK LTVELEQKIQVLQSKNASLQDTLEVLQSSY ASLQDTLEVLQSSYKNLENELELTKMDKMS K N A Y K N 1 0 1 1 0 2 1 0 0 0 3 1 0 0 0 3 1 0 1 1 0 0 16 0 1794.9 P49454 P49454 2672 2687 CENPF Centromere protein F yes yes 2 0.00035739 52.555 2 1.2917 1.0407 19.079 2 Median NaN NaN NaN 0 0 Median 1.2917 1.0407 19.079 2 0 Median 14668000 6109900 8557600 0 0 0 14668000 6109900 8557600 9687 1581 9951 25621;25622 40094;40095 40094 2 NASMNTQHGTATEVAVETTTPK DEDYCPRSKKANLGKNASMNTQHGTATEVA HGTATEVAVETTTPKQGQNLWFLCDSQKEL K N A P K Q 3 0 2 0 0 1 2 1 1 0 0 1 1 0 1 1 6 0 0 2 0 0 22 0 2287.075 Q9UIG0 Q9UIG0 964 985 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 2.5769E-24 116.94 2 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146640000 0 146640000 119270000 0 119270000 27374000 0 27374000 9688 2103 9952;9953 25623;25624;25625;25626;25627 40096;40097;40098;40099;40100 40096 1931 5 NASPEDVEYYNCQQELTDDLHK DNYKKKDQETKRWLKNASPEDVEYYNCQQE EYYNCQQELTDDLHKQYQIVERIIAHSNQK K N A H K Q 1 0 2 3 1 2 3 0 1 0 2 1 0 0 1 1 1 0 2 1 0 0 22 0 2667.1395 O14646 O14646 365 386 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 1.7463E-07 53.625 2 2 0.80591 0.70298 7.2287 4 Median 0.71238 0.73558 10.156 2 0 Median 0.86237 0.69699 4.9571 2 0 Median 58407000 32461000 25947000 42568000 24351000 18217000 15839000 8109700 7729600 9689 1366 9954 25628;25629;25630;25631 40101;40102;40103;40104;40105;40106;40107;40108 40103 8 NATDAVGIVLK SPLGEVVEQGITRVRNATDAVGIVLKELKR TRVRNATDAVGIVLKELKRQSSLGMFHLLV R N A L K E 2 0 1 1 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1099.6237 P51398;V9GYW1;V9GYA7;V9GYJ9;V9GYL9;V9GYC9;V9GZ03;V9GY11 P51398 235 245 DAP3 28S ribosomal protein S29, mitochondrial yes no 2 0.031266 48.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9690 1594 9955 25632 40109 40109 1 NAVITVPAYFNDSQR KMKETAENYLGHTAKNAVITVPAYFNDSQR NAVITVPAYFNDSQRQATKDAGQISGLNVL K N A Q R Q 2 1 2 1 0 1 0 0 0 1 0 0 0 1 1 1 1 0 1 2 0 0 15 0 1693.8424 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;Q2F839 B7Z4V2 174 188 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.6187E-05 88.338 2 2 2.4738 2.8295 53.141 4 Linear 2.423 2.7463 2.8788 2 0 Median 1.3304 1.0945 0.75261 2 0 Median 180530000 61593000 118940000 149940000 49035000 100900000 30592000 12558000 18034000 9691 1092 9956 25633;25634;25635;25636 40110;40111;40112;40113;40114;40115;40116;40117 40115 8 NAVIVDTTICDPHYNLAR EKFQDKDQVFIFLKKNAVIVDTTICDPHYN IVDTTICDPHYNLARSSRPFERRLYVLNSM K N A A R S 2 1 2 2 1 0 0 0 1 2 1 0 0 0 1 0 2 0 1 2 0 0 18 0 2071.0157 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 999 1016 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 2.0945E-05 39.657 2 1.181 1.0033 4.682 2 Median NaN NaN NaN 0 0 Median 1.181 1.0033 4.682 2 0 Median 5909500 2903800 3005800 0 0 0 5909500 2903800 3005800 9692 1699 9957 25637;25638 40118;40119;40120 40119 3 NAVLAIYTIYR AIRACLEHRHSYVRRNAVLAIYTIYRNFEH YVRRNAVLAIYTIYRNFEHLIPDAPELIHD R N A Y R N 2 1 1 0 0 0 0 0 0 2 1 0 0 0 0 0 1 0 2 1 0 0 11 0 1295.7238 P53618;E9PP73 P53618 154 164 COPB1 Coatomer subunit beta yes no 2 3.4794E-05 86.624 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2566500 0 2566500 2566500 0 2566500 0 0 0 9693 1606 9958 25639;25640 40121;40122 40122 2 NAVSVHSNLNSEAVMK LQQLVSQRHSTPQNKNAVSVHSNLNSEAVM AVSVHSNLNSEAVMKSLTQTFATVEVGRWN K N A M K S 2 0 3 0 0 0 1 0 1 0 1 1 1 0 0 3 0 0 0 3 0 0 16 0 1698.8359 Q5QJE6;J3KP30;B7Z854 Q5QJE6 346 361 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 3 0.00020311 47.916 1 1.4544 1.5667 NaN 1 Median 1.4544 1.5667 NaN 1 0 Median NaN NaN NaN 0 0 Median 33695000 13935000 19760000 33695000 13935000 19760000 0 0 0 9694 1813 9959 25641 40123 40123 1674 1 NCAVEFNFGQR EALGGQALYPHVLVKNCAVEFNFGQRAEPY VLVKNCAVEFNFGQRAEPYCSVLPGFTFIQ K N C Q R A 1 1 2 0 1 1 1 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 11 0 1340.5932 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;M0QYZ0 M0R3F1 225 235 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 0.00015274 94.85 2 2 0.97831 0.91352 13.495 4 Median 0.97831 0.98539 6.0658 2 0 Median 0.93699 0.81306 11.832 2 0 Median 35676000 17006000 18670000 30566000 14636000 15930000 5109300 2369800 2739400 9695 49 9960 25642;25643;25644;25645 40124;40125;40126;40127;40128;40129 40126 6 NCECLSCIDCGK SVKKIQVEKHVSVCRNCECLSCIDCGKDFW VCRNCECLSCIDCGKDFWGDDYKNHVKCIS R N C G K D 0 0 1 1 4 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 12 0 1514.5622 Q9NX58;A8K3Y5;D6RDJ1 Q9NX58 27 38 LYAR Cell growth-regulating nucleolar protein yes no 2 2.0954E-08 120.63 2 2 0.88502 0.81574 10.439 4 Median 0.70588 0.74916 1.423 2 0 Median 1.1022 0.89548 2.5691 2 0 Median 128880000 67931000 60948000 75134000 42990000 32144000 53745000 24941000 28804000 9696 2079 9961 25646;25647;25648;25649 40130;40131;40132;40133;40134;40135;40136;40137 40134 8 NCIISLVTQR EPVSLADREVISRLRNCIISLVTQRMMLYD ISRLRNCIISLVTQRMMLYDTSILYCYEAS R N C Q R M 0 1 1 0 1 1 0 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 10 0 1202.6441 Q13868;A3KFL5;A3KFL2;B3KQW2;A2VCR1 Q13868 239 248 EXOSC2 Exosome complex component RRP4 yes no 2 0.0068687 66.568 1 1 0.84805 0.709 NaN 1 Median NaN NaN NaN 0 0 Median 0.84805 0.709 NaN 1 0 Median 13405000 11713000 1692000 9833400 9833400 0 3571800 1879800 1692000 9697 1722 9962 25650;25651 40138;40139 40138 2 NCIIVSPDAGGAK PAVLQWIRENIAEWKNCIIVSPDAGGAKRV WKNCIIVSPDAGGAKRVTSIADRLNVEFAL K N C A K R 2 0 1 1 1 0 0 2 0 2 0 1 0 0 1 1 0 0 0 1 0 0 13 0 1300.6445 A0A140VK41;P11908;B2R860;H7C540;D3YTJ7 A0A140VK41 167 179 PRPS2 Ribose-phosphate pyrophosphokinase 2 no no 2 0.0057954 56.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5679100 0 5679100 5679100 0 5679100 0 0 0 9698 616 9963 25652 40140 40140 1 NCISTVVHQGLIR VKVFLALAAKGPVLRNCISTVVHQGLIRIC LRNCISTVVHQGLIRICSKPVVLPKGPESE R N C I R I 0 1 1 0 1 1 0 1 1 2 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1495.7929 P78527;B4DL41 P78527 477 489 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0017989 56.359 2 1 0.38966 0.35865 48.181 2 Median 0.51113 0.50423 NaN 1 0 Median 0.29705 0.2551 NaN 1 0 Median 21018000 13684000 7334000 12922000 8019300 4903000 8095600 5664700 2431000 9699 1665 9964 25653;25654;25655 40141;40142;40143;40144 40143 4 NCIVLIDSTPYR NASNNELVRTKTLVKNCIVLIDSTPYRQWY LVKNCIVLIDSTPYRQWYESHYALPLGRKK K N C Y R Q 0 1 1 1 1 0 0 0 0 2 1 0 0 0 1 1 1 0 1 1 0 0 12 0 1449.7286 Q5JR94;P62241;Q5JR95 Q5JR94 99 110 RPS8 40S ribosomal protein S8 yes no 2 1.5529E-37 176.33 2 7 0.85265 0.77402 2.1161 5 Median 0.66065 0.77618 0.01402 2 0 Median 0.86265 0.74778 2.1252 3 0 Median 1185900000 651400000 534470000 797480000 451040000 346440000 388390000 200360000 188020000 9700 1635 9965 25656;25657;25658;25659;25660;25661;25662;25663;25664 40145;40146;40147;40148;40149;40150;40151;40152;40153;40154;40155;40156;40157;40158;40159;40160;40161;40162;40163;40164 40162 20 NCLALADDK WGADKCEELLEKTVKNCLALADDKKLKSIA LEKTVKNCLALADDKKLKSIAFPSIGSGRN K N C D K K 2 0 1 2 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1018.4753 O75367;Q59FH0;B4DJC3 O75367 296 304 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.0014989 84.615 2 2 1.1223 1.0724 9.9986 4 Median 1.0077 1.187 7.2351 2 0 Median 1.1887 1.0144 0.74886 2 0 Median 921280000 450230000 471050000 771260000 381140000 390120000 150020000 69089000 80930000 9701 1401 9966 25665;25666;25667;25668 40165;40166;40167;40168;40169;40170;40171;40172;40173 40165 9 NCLALADDKK WGADKCEELLEKTVKNCLALADDKKLKSIA EKTVKNCLALADDKKLKSIAFPSIGSGRNG K N C K K L 2 0 1 2 1 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1146.5703 O75367;Q59FH0;B4DJC3 O75367 296 305 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 6.5981E-30 175.88 4 3 0.96818 1.0378 6.0397 7 Median 0.89781 1.0507 4.7251 4 0 Median 1.1666 0.98583 4.9042 3 0 Median 1153800000 593590000 560210000 939200000 493380000 445810000 214610000 100210000 114400000 9702 1401 9967 25669;25670;25671;25672;25673;25674;25675 40174;40175;40176;40177;40178;40179;40180;40181;40182;40183;40184;40185;40186 40175 13 NCLTNFHGMDLTR AFRKFKLITEDVQGKNCLTNFHGMDLTRDK GKNCLTNFHGMDLTRDKMCSMVKKWQTMIE K N C T R D 0 1 2 1 1 0 0 1 1 0 2 0 1 1 0 0 2 0 0 0 0 0 13 0 1577.7079 Q6NXR8;A8K4W0;P61247;D6RG13;B7Z3M5;H0Y8L7;E9PFI5;D6RAT0;D6RB09;D6RAS7;D6RED7 Q6NXR8 95 107 RPS3A 40S ribosomal protein S3a yes no 2;3 3.4161E-61 205.49 4 3 1.1116 1.2528 42.447 7 Median 1.1268 1.2984 5.2859 4 0 Median 0.88285 0.73323 34.798 3 0 Median 681660000 336650000 345010000 660520000 324790000 335730000 21138000 11860000 9278200 9703 742 9968;9969 25676;25677;25678;25679;25680;25681;25682 40187;40188;40189;40190;40191;40192;40193;40194;40195;40196 40189 579 10 NCPHIVVGTPGR FGGLSIKKDEEVLKKNCPHIVVGTPGRILA LKKNCPHIVVGTPGRILALARNKSLNLKHI K N C G R I 0 1 1 0 1 0 0 2 1 1 0 0 0 0 2 0 1 0 0 2 0 0 12 0 1305.6612 A0A024RCM3;Q13838;A0A0G2JJZ9;Q5STU3;F6WLT2;B4DP52;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;B4DIJ6;F6UJC5;A0A140TA18;B4DIZ8 A0A024RCM3 164 175 hCG_2005638;DDX39B Spliceosome RNA helicase DDX39B yes no 2 0.046218 42.243 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2774600 2774600 0 2774600 2774600 0 0 0 0 9704 362 9970 25683 40197 40197 1 NCPHVVVGTPGR FGGLSIKKDEEVLKKNCPHVVVGTPGRILA LKKNCPHVVVGTPGRILALVRNRSFSLKNV K N C G R I 0 1 1 0 1 0 0 2 1 0 0 0 0 0 2 0 1 0 0 3 0 0 12 0 1291.6455 O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3;A0A0D9SEM9 O00148 163 174 DDX39A;DDX39 ATP-dependent RNA helicase DDX39A no no 2;3 2.8033E-06 108.7 3 3 0.73165 0.62743 36.625 5 Median 1.0064 1.147 23.797 2 0 Median 0.72335 0.60827 2.6905 3 0 Median 115290000 53248000 62040000 104850000 46967000 57879000 10442000 6281100 4160500 9705 1359;521 9971 25684;25685;25686;25687;25688;25689 40198;40199;40200;40201;40202;40203;40204 40201 7 NCQHANAERPTVAR ISTSTSLPRGILKMKNCQHANAERPTVARI KNCQHANAERPTVARISSVQFHPGAQIVMV K N C A R I 3 2 2 0 1 1 1 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 14 1 1622.7696 B2RAX6;Q9Y5J1;F6VJE8 B2RAX6 216 229 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 0.0041748 28.546 1 1.2574 1.1529 NaN 1 Median NaN NaN NaN 0 0 Median 1.2574 1.1529 NaN 1 0 Median 11275000 4982600 6292400 0 0 0 11275000 4982600 6292400 9706 876 9972 25690 40205 40205 1 NCSSFLIK ______________________________ LQWMVVRNCSSFLIKRNKQTYSTEPNNLKA R N C I K R 0 0 1 0 1 0 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 8 0 967.4797 P46779;H0YKD8;H0YLP6;H0YMF4;Q59F34 P46779 12 19 RPL28 60S ribosomal protein L28 yes no 2 0.0058079 89.296 3 1 0.83042 0.77328 21.993 2 Median 0.80804 0.9034 NaN 1 0 Median 0.85343 0.66191 NaN 1 0 Median 169890000 114910000 54981000 155920000 107890000 48027000 13975000 7020100 6954500 9707 1572 9973 25691;25692;25693;25694 40206;40207;40208;40209;40210 40208 5 NCTIVSPDAGGAK PAVLKWIRENISEWRNCTIVSPDAGGAKRV WRNCTIVSPDAGGAKRVTSIADRLNVDFAL R N C A K R 2 0 1 1 1 0 0 2 0 1 0 1 0 0 1 1 1 0 0 1 0 0 13 0 1288.6082 Q53FW2;P60891;B1ALA9 Q53FW2 164 176 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 2 0.039184 31.597 1 0.75421 0.65192 NaN 1 Median NaN NaN NaN 0 0 Median 0.75421 0.65192 NaN 1 0 Median 1369700 765020 604630 0 0 0 1369700 765020 604630 9708 1626 9974 25695 40211 40211 1 NDASEVVLAGER SSVPSEDEWYCPECRNDASEVVLAGERLRE ECRNDASEVVLAGERLRESKKKAKMASATS R N D E R L 2 1 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1258.6153 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 378 389 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.00011706 94.791 2 1 0.64226 0.65887 11.632 2 Median 0.64226 0.65887 11.632 2 0 Median NaN NaN NaN 0 0 Median 51663000 31551000 20111000 51663000 31551000 20111000 0 0 0 9709 406 9975 25696;25697;25698 40212;40213;40214 40212 3 NDDSLLYK LNWAFIGVDEAHRLKNDDSLLYKTLIDFKS DEAHRLKNDDSLLYKTLIDFKSNHRLLITG K N D Y K T 0 0 1 2 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 8 0 966.46583 O14646;A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 O14646 621 628 CHD1;CHD2 Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 2 no no 2 0.029249 52.716 1 0.79306 0.81213 NaN 1 Median 0.79306 0.81213 NaN 1 0 Median NaN NaN NaN 0 0 Median 28449000 15707000 12742000 28449000 15707000 12742000 0 0 0 9710 1366;354 9976 25699 40215;40216 40215 2 NDEELNKLLGK KKTRIIPRHLQLAIRNDEELNKLLGKVTIA LAIRNDEELNKLLGKVTIAQGGVLPNIQAV R N D G K V 0 0 2 1 0 0 2 1 0 0 3 2 0 0 0 0 0 0 0 0 0 0 11 1 1271.6721 A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3;B2R5B6 A3KPC7 90 100 HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1 no no 2 0.01624 65.627 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9711 312;832 9977 25700 40217 40217 1 NDFTEEEEAQVR KGKTPEEIRKTFNIKNDFTEEEEAQVRKEN NIKNDFTEEEEAQVRKENQWCEEK______ K N D V R K 1 1 1 1 0 1 4 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1465.6321 E5RJR5;P63208 E5RJR5 143 154 SKP1 S-phase kinase-associated protein 1 yes no 2 1.0473E-17 139.43 2 1 0.75536 0.85411 32.988 3 Plateau 0.74818 0.80763 8.9406 2 0 Median 0.54562 0.46096 NaN 1 0 Median 86832000 47602000 39229000 82106000 44489000 37617000 4725500 3113000 1612500 9712 1215 9978 25701;25702;25703 40218;40219;40220;40221 40218 4 NDGAAILAAVSSIAQK AKKPMVVLGSSALQRNDGAAILAAVSSIAQ DGAAILAAVSSIAQKIRMTSGVTGDWKVMN R N D Q K I 5 0 1 1 0 1 0 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 16 0 1527.8257 B4DJ81;E5KRK5;P28331;Q9P1A0 B4DJ81 368 383 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 9.1059E-09 100.22 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5543700 0 5543700 5543700 0 5543700 0 0 0 9713 986 9979 25704;25705 40222;40223 40223 2 NDGVGQISGFYVGR AYKPGALTFLLSMGRNDGVGQISGFYVGRL RNDGVGQISGFYVGRLMVRLTKSRDLFVST R N D G R L 0 1 1 1 0 1 0 4 0 1 0 0 0 1 0 1 0 0 1 2 0 0 14 0 1467.7106 Q9BRQ8 Q9BRQ8 335 348 AIFM2 Apoptosis-inducing factor 2 yes yes 2 0.0012613 74.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9714 1998 9980 25706 40224 40224 1 NDIASHPPVEGSYAPR VETGTQLEKLMENMRNDIASHPPVEGSYAP DIASHPPVEGSYAPRRGEFCIAKFVDGEWY R N D P R R 2 1 1 1 0 0 1 1 1 1 0 0 0 0 3 2 0 0 1 1 0 0 16 0 1708.8169 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;H7C597 A0A140VK49 716 731 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2;3 1.756E-06 112.44 4 1.2485 1.3647 9.6449 3 Median 1.2485 1.3647 9.6449 3 0 Median NaN NaN NaN 0 0 Median 98848000 44746000 54102000 98848000 44746000 54102000 0 0 0 9715 618 9981 25707;25708;25709;25710 40225;40226;40227;40228;40229;40230;40231 40228 7 NDIHTLLK WLEYRVTQVDGHSSKNDIHTLLKDLNSYLE VDGHSSKNDIHTLLKDLNSYLEDKVYLTGY K N D L K D 0 0 1 1 0 0 0 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 952.53418 H0YAL7;D6RBD7;C9J1V9;O43324;H0YAH9 H0YAL7 76 83 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2 0.0011132 113.74 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14141000 0 14141000 14141000 0 14141000 0 0 0 9716 1127 9982 25711 40232 40232 1 NDKPSPNSENEQNSVTLEVLLVK LSAHLQLTFTGFFHKNDKPSPNSENEQNSV ENEQNSVTLEVLLVKVCHKKRKDVSCPIRQ K N D V K V 0 0 4 1 0 1 3 0 0 0 3 2 0 0 2 3 1 0 0 3 0 0 23 1 2553.2922 J3QQW9;Q15022;A8K1U9 J3QQW9 145 167 SUZ12 Polycomb protein SUZ12 yes no 3 0.025716 19.25 1 1.9749 1.7082 NaN 1 Median NaN NaN NaN 0 0 Median 1.9749 1.7082 NaN 1 0 Median 3976000 1346700 2629300 0 0 0 3976000 1346700 2629300 9717 1336 9983 25712 40233 40233 1 NDLAVVDVR SAPELKTGISDVFAKNDLAVVDVRIGMTRK SDVFAKNDLAVVDVRIGMTRKFGYVDFESA K N D V R I 1 1 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 9 0 999.53491 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 257 265 NCL Nucleolin yes no 2 0.00036634 100.57 2 2 0.98438 1.1349 1.692 2 Median 0.98438 1.1349 1.692 2 0 Median NaN NaN NaN 0 0 Median 350230000 182700000 167520000 332590000 165070000 167520000 17639000 17639000 0 9718 151 9984 25713;25714;25715;25716 40234;40235;40236;40237;40238;40239;40240;40241;40242;40243 40235 10 NDLSPASSGNAVYDFFIGR VLSVYLYMRSLKAPRNDLSPASSGNAVYDF PASSGNAVYDFFIGRELNPRIGTFDLKYFC R N D G R E 2 1 2 2 0 0 0 2 0 1 1 0 0 2 1 3 0 0 1 1 0 0 19 0 2028.9541 Q14739;A0A024R3R5 Q14739 354 372 LBR Lamin-B receptor yes no 2 6.1882E-12 103.76 2 1.383 1.4384 8.6902 2 Median 1.383 1.4384 8.6902 2 0 Median NaN NaN NaN 0 0 Median 42600000 19535000 23065000 42600000 19535000 23065000 0 0 0 9719 1743 9985 25717;25718 40244;40245;40246;40247 40247 4 NDLSPTTVMSEGAR TVAGQDAVIVLLGTRNDLSPTTVMSEGARN RNDLSPTTVMSEGARNIVAAMKAHGVDKVV R N D A R N 1 1 1 1 0 0 1 1 0 0 1 0 1 0 1 2 2 0 0 1 0 0 14 0 1476.6879 V9HWI1;P30043;M0QZL1;M0R192 V9HWI1 79 92 HEL-S-10;BLVRB Flavin reductase (NADPH) yes no 2 1.0929E-09 117.09 2 3.8572 3.8208 NaN 1 Median 3.8572 3.8208 NaN 1 0 Median NaN NaN NaN 0 0 Median 20626000 3369500 17256000 20626000 3369500 17256000 0 0 0 9720 1528 9986 25719;25720 40248;40249 40249 1295 2 NDLYYNTITNFSEK SRENSKELPPFWEQRNDLYYNTITNFSEKD RNDLYYNTITNFSEKDRPENVHGGILADDM R N D E K D 0 0 3 1 0 0 1 0 0 1 1 1 0 1 0 1 2 0 2 0 0 0 14 0 1720.7944 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;Q05DQ5;Q05DF7;Q05BZ6 Q59GQ7 268 281 HLTF Helicase-like transcription factor yes no 2 1.3651E-07 107.18 2 1 0.67691 0.61788 12.168 2 Median 0.54397 0.56694 NaN 1 0 Median 0.84233 0.6734 NaN 1 0 Median 14588000 8049900 6537700 11683000 6496500 5186100 2904900 1553300 1351600 9721 512 9987 25721;25722;25723 40250;40251;40252 40251 3 NDMDEPPSGDFGGDEEK LELHCQVMFRNYQRKNDMDEPPSGDFGGDE MDEPPSGDFGGDEEKSRKRKNKDPKFAEME K N D E K S 0 0 1 4 0 0 3 3 0 0 0 1 1 1 2 1 0 0 0 0 0 0 17 0 1837.6949 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 571 587 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 3.7639E-07 93.011 2 0.95391 1.0644 0.52023 2 Median 0.95391 1.0644 0.52023 2 0 Median NaN NaN NaN 0 0 Median 118700000 61757000 56940000 118700000 61757000 56940000 0 0 0 9722 515 9988 25724;25725 40253;40254;40255;40256;40257;40258 40258 377 6 NDNDTFTVK VVGPAEADIDFDIIRNDNDTFTVKYTPRGA DFDIIRNDNDTFTVKYTPRGAGSYTIMVLF R N D V K Y 0 0 2 2 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 1 0 0 9 0 1052.4775 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 829 837 FLNA Filamin-A no no 2 0.0011661 87.639 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16522000 0 16522000 15240000 0 15240000 1281800 0 1281800 9723 1504 9989 25726;25727 40259;40260 40259 2 NDPEITINVPQSSK ELAKTPQKSVSFSLKNDPEITINVPQSSKG KNDPEITINVPQSSKGHSASDKVQPKNNDK K N D S K G 0 0 2 1 0 1 1 0 0 2 0 1 0 0 2 2 1 0 0 1 0 0 14 0 1540.7733 B4DYU9;A0A024R411;Q13416 B4DYU9 127 140 ORC2L;ORC2 Origin recognition complex subunit 2 yes no 2 0.0032704 47.429 2 2 1.4424 1.2939 26.653 4 Median 1.6292 1.6945 21.547 2 0 Median 1.4424 1.1276 2.8646 2 0 Median 31094000 12313000 18781000 23567000 9164900 14402000 7527200 3148400 4378800 9724 146 9990 25728;25729;25730;25731 40261;40262;40263;40264;40265;40266 40263 6 NDQCYDDIR VRQSKFRHVFGQAVKNDQCYDDIRVSRVTW FGQAVKNDQCYDDIRVSRVTWDSSFCAVNP K N D I R V 0 1 1 3 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1197.4721 Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B4DMH3;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7 Q53G58 20 28 CORO1C Coronin;Coronin-1C yes no 2 7.7315E-08 142.04 2 2.8576 3.1807 8.6116 2 Median 2.8576 3.1807 8.6116 2 0 Median NaN NaN NaN 0 0 Median 101900000 26626000 75277000 101900000 26626000 75277000 0 0 0 9725 340 9991 25732;25733 40267;40268;40269;40270 40267 4 NDVFYLQPER YEFYLSKCSESVKQRNDVFYLQPERSCVPN SVKQRNDVFYLQPERSCVPNSPMWYSTFPI R N D E R S 0 1 1 1 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 10 0 1279.6197 A6NHB5;Q14202;A6NHN7;Q5VZL5;H7C1I7 Q5VZL5 1488 1497 ZMYM3;ZMYM4 Zinc finger MYM-type protein 3;Zinc finger MYM-type protein 4 no no 2 0.010853 52.79 1 2.0852 1.8406 NaN 1 Median NaN NaN NaN 0 0 Median 2.0852 1.8406 NaN 1 0 Median 2448400 869210 1579100 0 0 0 2448400 869210 1579100 9726 1835;681 9992 25734 40271 40271 1 NDVMNLLESAGFSR AKKDQYFLDKKMVTKNDVMNLLESAGFSRS KNDVMNLLESAGFSRSNPYYIVKQGKINQM K N D S R S 1 1 2 1 0 0 1 1 0 0 2 0 1 1 0 2 0 0 0 1 0 0 14 0 1551.7351 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 119 132 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0032317 62.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1055800 0 1055800 0 0 0 1055800 0 1055800 9727 803 9993 25735 40272 40272 1 NDWLDLR LQGSEEPVFRAKNVRNDWLDLRVPIWDQDI VFRAKNVRNDWLDLRVPIWDQDIQFLPGSQ R N D L R V 0 1 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 7 0 930.45593 Q6RFH5;E9PS41 Q6RFH5 175 181 WDR74 WD repeat-containing protein 74 yes no 2 0.015113 99.375 2 1 0.80731 0.90959 6.7373 3 Median 0.80145 0.90876 0.12873 2 0 Median 1.1847 1.0212 NaN 1 0 Median 255520000 146660000 108860000 251130000 144750000 106380000 4398000 1915000 2482900 9728 1859 9994 25736;25737;25738 40273;40274;40275;40276;40277 40275 5 NDWTNPEINK YETLVDFDNHLDDIRNDWTNPEINKAVLHL LDDIRNDWTNPEINKAVLHLC_________ R N D N K A 0 0 3 1 0 0 1 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 10 0 1229.5677 M0R1B0;Q53Y03;O43402 M0R1B0 85 94 EMC8;COX4NB ER membrane protein complex subunit 8 yes no 2 0.05036 44.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9729 1355 9995 25739 40278 40278 1 NEAPEGNLGDFAEFQR IYGERLYETSYRLSKNEAPEGNLGDFAEFQ EAPEGNLGDFAEFQRRHSMQTPVRMEWSGI K N E Q R R 2 1 2 1 0 1 3 2 0 0 1 0 0 2 1 0 0 0 0 0 0 0 16 0 1792.8016 Q9UKN8;Q05CN7 Q9UKN8 226 241 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 3.6394E-06 88.552 1 2 1.0949 0.91561 11.23 3 Median 0.86527 0.91561 NaN 1 0 Median 1.1894 1.0058 13.907 2 0 Median 38828000 20370000 18458000 23654000 13971000 9682600 15174000 6398400 8775600 9730 2107 9996 25740;25741;25742 40279;40280;40281;40282;40283;40284;40285 40285 7 NEAQEEIYK QGKDRDLVTEDTGVRNEAQEEIYKKGQSKR EDTGVRNEAQEEIYKKGQSKRIWGELYKVI R N E Y K K 1 0 1 0 0 1 3 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 9 0 1122.5193 Q5T0F3;Q13823;B4DPI9 Q5T0F3 191 199 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0034102 78.516 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18227000 0 18227000 18227000 0 18227000 0 0 0 9731 1721 9997 25743 40286 40286 1 NEAQEEIYKK QGKDRDLVTEDTGVRNEAQEEIYKKGQSKR DTGVRNEAQEEIYKKGQSKRIWGELYKVID R N E K K G 1 0 1 0 0 1 3 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 10 1 1250.6143 Q5T0F3;Q13823;B4DPI9 Q5T0F3 191 200 GNL2 Nucleolar GTP-binding protein 2 yes no 2 1.4236E-16 172.98 2 1 1.32 1.3062 13.824 3 Median 1.2277 1.4099 10.805 2 0 Median 1.3457 1.1548 NaN 1 0 Median 30587000 14064000 16523000 26693000 12394000 14298000 3894800 1670000 2224800 9732 1721 9998 25744;25745;25746 40287;40288;40289;40290;40291 40288 5 NEATVETLTETK KIGMRGKPKVIDLTRNEATVETLTETKIHC LTRNEATVETLTETKIHCETDEKDFYLYYF R N E T K I 1 0 1 0 0 0 3 0 0 0 1 1 0 0 0 0 4 0 0 1 0 0 12 0 1334.6565 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;Q59FS7;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0;B4DGI6 B4DKV2 463 474 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.00072982 66.663 2 1 0.7981 0.72341 6.1806 2 Median 0.72643 0.75573 NaN 1 0 Median 0.87684 0.69248 NaN 1 0 Median 41938000 28687000 13251000 36669000 26164000 10505000 5269400 2523700 2745800 9733 993 9999 25747;25748;25749 40292;40293;40294 40293 3 NEDEEEEEEEKDEAEDLLGR TSVKKKVKNVGIFLKNEDEEEEEEEKDEAE EEEEEKDEAEDLLGRGSRAALLTERTRNEM K N E G R G 1 1 1 3 0 0 10 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 20 1 2405.983 Q9Y5B9 Q9Y5B9 434 453 SUPT16H FACT complex subunit SPT16 yes yes 3 1.3989E-31 146.1 2 2 0.81536 0.84364 1.9872 4 Median 0.70312 0.84557 2.3236 2 0 Median 0.95211 0.84081 2.4757 2 0 Median 1238200000 697920000 540270000 901220000 525030000 376190000 336970000 172890000 164080000 9734 2148 10000 25750;25751;25752;25753 40295;40296;40297;40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308;40309 40297 15 NEDITEPQSILAAAEK LEKASRELWMRVWSRNEDITEPQSILAAAE EDITEPQSILAAAEKAGMSAEQAQGLLEKI R N E E K A 3 0 1 1 0 1 3 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 16 0 1727.8578 Q2NLC8;E9PFN5;Q6FII1;Q9Y2Q3 Q2NLC8 76 91 GSTK1;LOC51064 Glutathione S-transferase kappa 1 yes no 2 0.00038625 51.211 2 2 1.5574 1.3982 53.256 4 Median 2.2274 2.2542 12.247 2 0 Median 1.1261 0.90539 6.1693 2 0 Median 55255000 18589000 36666000 44334000 13451000 30883000 10921000 5138100 5783100 9735 1234 10001 25754;25755;25756;25757 40310;40311;40312;40313;40314;40315 40311 6 NEDNIMTAQNVPLK KKKNLDCSRSTRSSKNEDNIMTAQNVPLKP KNEDNIMTAQNVPLKPQTSGYTCNIPTESN K N E L K P 1 0 3 1 0 1 1 0 0 1 1 1 1 0 1 0 1 0 0 1 0 0 14 0 1585.777 Q03188;H0Y8J2 Q03188 642 655 CENPC Centromere protein C yes no 2 7.004E-08 107.09 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5496100 5496100 0 5496100 5496100 0 0 0 0 9736 1681 10002 25758;25759 40316;40317 40316 1496 2 NEDRGEEEAESSISSTSNEQLK LHQRFLREGRFWKSKNEDRGEEEAESSISS EAESSISSTSNEQLKVTQEPRAKKGRRNQS K N E L K V 1 1 2 1 0 1 6 1 0 1 1 1 0 0 0 5 1 0 0 0 0 0 22 1 2438.0681 Q15326;E7ENI9;J3QKD2;Q5BJG6;B7Z3W2;B0QZE2;B7Z2J6;Q6PJR5;A0A0A0MRY2;Q5UGI2;B7Z3Z1 Q15326 367 388 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 6.7285E-09 76.156 1 2 1.6967 1.4204 4.8537 3 Median 1.2104 1.3828 NaN 1 0 Median 1.7591 1.4691 4.7656 2 0 Median 33154000 15504000 17650000 21241000 11346000 9895200 11912000 4157900 7754600 9737 1758 10003 25760;25761;25762 40318;40319;40320;40321;40322;40323 40319 6 NEEDAAELVALAQAVNAR LHQFCAQHGRPPRPRNEEDAAELVALAQAV DAAELVALAQAVNARALPAVQQNNLDEDLI R N E A R A 6 1 2 1 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 18 0 1882.9385 A0A024R1A3;P22314 A0A024R1A3 351 368 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 2.3682E-80 183.81 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9890100 0 9890100 9890100 0 9890100 0 0 0 9738 74 10004 25763 40324 40324 1 NEENTEPGAESSENADDPNK ELDQENEAALENGIKNEENTEPGAESSENA EPGAESSENADDPNKDTSENADGQSDENKD K N E N K D 2 0 4 2 0 0 5 1 0 0 0 1 0 0 2 2 1 0 0 0 0 0 20 0 2145.857 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;Q5CZA7;B4DF66;B3KM87;B4DRS1;Q9H4N1;Q68E03 D6REM6 737 756 MATR3;DKFZp686K23100;DKFZp686K0542;DKFZp686L22104 Matrin-3 yes no 2 4.3641E-07 83.499 1 1.7733 1.7792 NaN 1 Median 1.7733 1.7792 NaN 1 0 Median NaN NaN NaN 0 0 Median 6904200 2067700 4836500 6904200 2067700 4836500 0 0 0 9739 542 10005 25764 40325 40325 1 NEEPSEEEIDAPK IEKKVVSSKTKKVTKNEEPSEEEIDAPKPK TKNEEPSEEEIDAPKPKKMKKEKEMNGETR K N E P K P 1 0 1 1 0 0 5 0 0 1 0 1 0 0 2 1 0 0 0 0 0 0 13 0 1485.6471 Q9NR30 Q9NR30 117 129 DDX21 Nucleolar RNA helicase 2 yes yes 2 3.2847E-19 147.74 2 1 1.0967 1.1965 7.0875 3 Median 1.0518 1.1546 5.0403 2 0 Median 1.6274 1.2839 NaN 1 0 Median 100700000 44547000 56153000 94757000 42198000 52560000 5943200 2349400 3593800 9740 2065 10006 25765;25766;25767 40326;40327;40328;40329;40330;40331;40332 40328 7 NEEPSEEEIDAPKPK IEKKVVSSKTKKVTKNEEPSEEEIDAPKPK NEEPSEEEIDAPKPKKMKKEKEMNGETREK K N E P K K 1 0 1 1 0 0 5 0 0 1 0 2 0 0 3 1 0 0 0 0 0 0 15 1 1710.7948 Q9NR30 Q9NR30 117 131 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 1.3577E-14 150.06 4 4 1.321 1.3192 4.7688 8 Median 1.0973 1.2952 5.297 4 0 Median 1.5758 1.34 3.222 4 0 Median 447200000 205310000 241890000 299830000 147350000 152490000 147360000 57966000 89398000 9741 2065 10007 25768;25769;25770;25771;25772;25773;25774;25775 40333;40334;40335;40336;40337;40338;40339;40340;40341;40342;40343;40344;40345;40346;40347 40341 15 NEESVLLFTQIK FYVPSGNYYNIKNLRNEESVLLFTQIKR__ NLRNEESVLLFTQIKR______________ R N E I K R 0 0 1 0 0 1 2 0 0 1 2 1 0 1 0 1 1 0 0 1 0 0 12 0 1419.7609 Q03188 Q03188 931 942 CENPC Centromere protein C yes yes 2 3.973E-10 125.23 3 1.1871 0.96786 NaN 1 Median NaN NaN NaN 0 0 Median 1.1871 0.96786 NaN 1 0 Median 15920000 8327200 7592700 0 0 0 15920000 8327200 7592700 9742 1681 10008 25776;25777;25778 40348;40349;40350 40350 3 NEETLREEEEEK SNKEIMEHIRKILGKNEETLREEEEEKKQL LGKNEETLREEEEEKKQLSHPANFGPRKYC K N E E K K 0 1 1 0 0 0 7 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 12 1 1533.6795 P82663 P82663 109 120 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 2 5.7614E-06 107.06 3 1.4086 1.5715 33.143 2 Median 1.4086 1.5715 33.143 2 0 Median NaN NaN NaN 0 0 Median 39775000 15515000 24260000 39775000 15515000 24260000 0 0 0 9743 1667 10009 25779;25780;25781 40351;40352;40353;40354 40354 4 NEETLREEEEEKK SNKEIMEHIRKILGKNEETLREEEEEKKQL GKNEETLREEEEEKKQLSHPANFGPRKYCL K N E K K Q 0 1 1 0 0 0 7 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 13 2 1661.7744 P82663 P82663 109 121 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 3 0.021852 35.204 1 1.4389 1.8558 NaN 1 Median 1.4389 1.8558 NaN 1 0 Median NaN NaN NaN 0 0 Median 4606500 1840000 2766400 4606500 1840000 2766400 0 0 0 9744 1667 10010 25782 40355 40355 1 NEEVQFGQHLDAAR YQGLFSTADLDSMLRNEEVQFGQHLDAARY RNEEVQFGQHLDAARYINGRRETLNPPGRA R N E A R Y 2 1 1 1 0 2 2 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 14 0 1612.7594 A0A0A8K8C0;Q9H6W3 A0A0A8K8C0 253 266 URLC2;NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 yes no 2;3 0.0022679 66.267 3 0.55034 0.55326 NaN 1 Median 0.55034 0.55326 NaN 1 0 Median NaN NaN NaN 0 0 Median 18942000 11522000 7419400 18942000 11522000 7419400 0 0 0 9745 497 10011 25783;25784;25785 40356;40357;40358 40358 3 NEFISEYCGELISQDEADRR DVAGWGTFIKESVQKNEFISEYCGELISQD EYCGELISQDEADRRGKVYDKYMSSFLFNL K N E R R G 1 2 1 2 1 1 4 1 0 2 1 0 0 1 0 2 0 0 1 0 0 0 20 1 2430.0758 A0A0A0MSY9;Q92800 A0A0A0MSY9 627 646 EZH1 Histone-lysine N-methyltransferase EZH1 yes no 3 4.9097E-05 38.017 2 2 1.572 1.3478 22.501 3 Median 0.975 1.0628 NaN 1 0 Median 1.6988 1.4987 15.005 2 0 Median 35399000 20149000 15249000 23931000 16490000 7441200 11468000 3659900 7808100 9746 483 10012 25786;25787;25788;25789 40359;40360;40361;40362 40360 4 NEGNIFPNPEATFVK YLRINFYCPGSALGRNEGNIFPNPEATFVK NEGNIFPNPEATFVKEITYRASNIKAPGEQ R N E V K E 1 0 3 0 0 0 2 1 0 1 0 1 0 2 2 0 1 0 0 1 0 0 15 0 1675.8206 Q9Y5B9 Q9Y5B9 582 596 SUPT16H FACT complex subunit SPT16 yes yes 2 1.8313E-30 155.02 2 2 0.6558 0.67715 8.2467 4 Median 0.60909 0.71288 0.73046 2 0 Median 0.72011 0.62385 5.0523 2 0 Median 941060000 565230000 375830000 613120000 380200000 232920000 327940000 185020000 142910000 9747 2148 10013 25790;25791;25792;25793 40363;40364;40365;40366;40367;40368;40369;40370;40371 40365 9 NEGVIEFVSYSDMK QAGEVTYADAHKGRKNEGVIEFVSYSDMKR KNEGVIEFVSYSDMKRALEKLDGTEVNGRK K N E M K R 0 0 1 1 0 0 2 1 0 1 0 1 1 1 0 2 0 0 1 2 0 0 14 0 1616.7392 A8K644;Q08170;A0A0D9SEM4;Q53F45;Q59EF5 A8K644 141 154 SFRS4;SRSF4 Serine/arginine-rich splicing factor 4 yes no 2 0.0015033 47.712 1 1.6212 1.6386 NaN 1 Median 1.6212 1.6386 NaN 1 0 Median NaN NaN NaN 0 0 Median 10116000 3935300 6181000 10116000 3935300 6181000 0 0 0 9748 755 10014 25794 40372 40372 585 1 NEIASVAYR NFPNPNPFVEDDMDKNEIASVAYRYRRWKL EDDMDKNEIASVAYRYRRWKLGDDIDLIVR K N E Y R Y 2 1 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 9 0 1021.5193 O15371;B4E1K8 O15371 351 359 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 0.003533 78.264 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13086000 0 13086000 13086000 0 13086000 0 0 0 9749 1378 10015 25795 40373 40373 1 NEIDNYEEDYQK LTEAEKLLTQHENIKNEIDNYEEDYQKMRD NIKNEIDNYEEDYQKMRDMGEMVTQGQTDA K N E Q K M 0 0 2 2 0 1 3 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 12 0 1558.6423 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1023 1034 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 4.9915E-06 110.39 2 2 2.6933 2.4012 50.131 4 Median 1.5864 1.5704 7.5362 2 0 Median 4.6696 3.7119 9.0811 2 0 Median 42564000 15791000 26773000 36437000 14672000 21765000 6127400 1119500 5007900 9750 415 10016 25796;25797;25798;25799 40374;40375;40376;40377;40378 40375 5 NEINIDTLAR WKMFYDARKPRSQIKNEINIDTLARDEFNL RSQIKNEINIDTLARDEFNLQKMMVMVTAS K N E A R D 1 1 2 1 0 0 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1157.6041 Q8N766 Q8N766 518 527 EMC1 ER membrane protein complex subunit 1 yes yes 2 0.03712 39.937 1 0.74605 0.64612 NaN 1 Median NaN NaN NaN 0 0 Median 0.74605 0.64612 NaN 1 0 Median 1963700 1185300 778410 0 0 0 1963700 1185300 778410 9751 1913 10017 25800 40379 40379 1 NELAETLALLK DDQDGSSWKCIVRNRNELAETLALLKAQID VRNRNELAETLALLKAQIDPVLLKNSSQQD R N E L K A 2 0 1 0 0 0 2 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 11 0 1213.6918 Q96T23;H0YER1;Q05DG0;H7C306 Q96T23 196 206 RSF1 Remodeling and spacing factor 1 yes no 2 0.0007579 71.451 2 2 0.83233 0.70364 13.883 2 Median NaN NaN NaN 0 0 Median 0.83233 0.70364 13.883 2 0 Median 5550000 1447000 4103000 2874300 0 2874300 2675600 1447000 1228600 9752 1991 10018 25801;25802;25803;25804 40380;40381;40382;40383 40380 4 NELEIPGQYDGR ECSPWMSDFKVEFLRNELEIPGQYDGRGKP FLRNELEIPGQYDGRGKPLPEYHVRIAGFD R N E G R G 0 1 1 1 0 1 2 2 0 1 1 0 0 0 1 0 0 0 1 0 0 0 12 0 1389.6525 P78527 P78527 3697 3708 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 6.1296E-13 133.89 2 2 0.50919 0.49498 47.991 4 Median 0.65489 0.74106 0.48653 2 0 Median 0.38948 0.32302 3.7685 2 0 Median 236860000 140930000 95929000 202570000 116840000 85734000 34289000 24094000 10195000 9753 1665 10019 25805;25806;25807;25808 40384;40385;40386;40387;40388;40389;40390 40387 7 NELESYAYSLK FAEEDKKLKERIDTRNELESYAYSLKNQIG IDTRNELESYAYSLKNQIGDKEKLGGKLSS R N E L K N 1 0 1 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 2 0 0 0 11 0 1315.6296 V9HWB4;P11021 V9HWB4 563 573 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.0086314 50.452 1 0.79631 0.6428 NaN 1 Median NaN NaN NaN 0 0 Median 0.79631 0.6428 NaN 1 0 Median 4314500 2619000 1695500 0 0 0 4314500 2619000 1695500 9754 1466 10020 25809 40391 40391 1 NELMYQLEQDHDLQAILQER PLAFATPEQISMDLKNELMYQLEQDHDLQA QLEQDHDLQAILQERELLPVKKFESEILEA K N E E R E 1 1 1 2 0 4 3 0 1 1 4 0 1 0 0 0 0 0 1 0 0 0 20 0 2485.1907 Q08211;Q58F26;Q6PJK6 Q08211 366 385 DHX9 ATP-dependent RNA helicase A yes no 3 2.3997E-65 179.95 4 4 1.4866 1.4008 22.802 7 Median 1.4866 1.6532 3.5866 3 0 Median 1.4166 1.1724 18.586 4 0 Median 340520000 133680000 206840000 268280000 103450000 164830000 72246000 30235000 42011000 9755 1691 10021;10022 25810;25811;25812;25813;25814;25815;25816;25817 40392;40393;40394;40395;40396;40397;40398;40399;40400;40401;40402;40403 40403 1518 12 NELQQTINK QKYSVADIERINHERNELQQTINKLTKDLE RINHERNELQQTINKLTKDLEAEQQKLWNE R N E N K L 0 0 2 0 0 2 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 1086.5669 A8K031;O14777;Q05DQ6 A8K031 374 382 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 1.656E-06 136.27 2 2 0.8723 0.79694 10.765 3 Median 0.79715 0.83379 14.769 2 0 Median 0.99521 0.79694 NaN 1 0 Median 53152000 29232000 23920000 48411000 25920000 22491000 4740800 3312200 1428700 9756 696 10023 25818;25819;25820;25821 40404;40405;40406;40407;40408;40409 40405 6 NENEEILERPAQLANAR EGFGHRPHKDLWASKNENEEILERPAQLAN NEEILERPAQLANARETPHSPGVEDAPIAK K N E A R E 3 2 3 0 0 1 4 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 17 1 1965.9868 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 308 324 LIMA1 LIM domain and actin-binding protein 1 yes no 3 8.7468E-26 122.1 2 2 2.2972 2.5903 10.176 2 Median 2.2972 2.5903 10.176 2 0 Median NaN NaN NaN 0 0 Median 218370000 54437000 163940000 172620000 54437000 118180000 45756000 0 45756000 9757 1010 10024 25822;25823;25824;25825 40410;40411;40412;40413;40414;40415 40412 6 NENLAANFLLQQNFDED FPEGLVIQAYFACEKNENLAANFLLQQNFD NLAANFLLQQNFDED_______________ K N E E D - 2 0 4 2 0 2 2 0 0 0 3 0 0 2 0 0 0 0 0 0 0 0 17 0 1993.9017 P54727;Q53F10;B7Z4W4 P54727 393 409 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.021938 39.424 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8670900 0 0 8670900 0 0 0 0 0 9758 1610 10025 25826 40416 40416 1 NENTEGSPQEDGVELEGLK EMKAEAEKKNKKKIKNENTEGSPQEDGVEL EGSPQEDGVELEGLKQRLEKKQKREPGTKT K N E L K Q 0 0 2 1 0 1 5 3 0 0 2 1 0 0 1 1 1 0 0 1 0 0 19 0 2043.9233 P11388 P11388 1241 1259 TOP2A DNA topoisomerase 2-alpha yes yes 2 9.7768E-93 204.35 3 2 0.70059 0.6832 2.2806 4 Median 0.5992 0.69032 3.2464 2 0 Median 0.80065 0.68245 1.936 2 0 Median 551130000 336320000 214810000 410200000 259950000 150250000 140930000 76372000 64554000 9759 1471 10026 25827;25828;25829;25830;25831 40417;40418;40419;40420;40421;40422;40423 40420 7 NEPTSEPTEPSQAGEDLEK KFKSFCQEHSDGGPRNEPTSEPTEPSQAGE SEPTEPSQAGEDLEKVTLRKQRLQQLEEDF R N E E K V 1 0 1 1 0 1 5 1 0 0 1 1 0 0 3 2 2 0 0 0 0 0 19 0 2056.9073 B5MBX1;A8K356;A8K9C0;A0A0C4DFT8;B4DFY8;G3XAA4;B3KPL2;Q9NQC1 B5MBX1 371 389 JADE2;PHF15 Protein Jade-2 yes no 2 0.015592 38.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4681400 4681400 0 4681400 4681400 0 0 0 0 9760 507 10027 25832 40424 40424 1 NEQAFEEVFQNANFR ILGQNAAYLGELKDKNEQAFEEVFQNANFR NEQAFEEVFQNANFRSFIFRVRVKVETYND K N E F R S 2 1 3 0 0 2 3 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 15 0 1841.8333 P27694;I3L4R8 P27694 554 568 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 2.1021E-15 133.05 2 2 0.45642 0.42487 58.421 4 Median 0.67422 0.68077 10.364 2 0 Median 0.29627 0.25254 17.264 2 0 Median 46734000 31015000 15719000 37430000 23595000 13835000 9304300 7420000 1884400 9761 1525 10028 25833;25834;25835;25836 40425;40426;40427;40428 40425 4 NEQDAYAINSYTR GSCAENTAKKLNIARNEQDAYAINSYTRSK ARNEQDAYAINSYTRSKAAWEAGKFGNEVI R N E T R S 2 1 2 1 0 1 1 0 0 1 0 0 0 0 0 1 1 0 2 0 0 0 13 0 1543.6903 A0A140VJX1;P24752 A0A140VJX1 209 221 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 2 0.0041619 61.435 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9762 611 10029 25837 40429 40429 1 NEQFPVLDHLLSIIK VGFYIKQKKTRSKGRNEQFPVLDHLLSIIK NEQFPVLDHLLSIIKLPPNKDTTYLSQSWA R N E I K L 0 0 1 1 0 1 1 0 1 2 3 1 0 1 1 1 0 0 0 1 0 0 15 0 1764.9774 O75691 O75691 491 505 UTP20 Small subunit processome component 20 homolog yes yes 3 2.9777E-05 82.651 1 1.3212 1.326 NaN 1 Median 1.3212 1.326 NaN 1 0 Median NaN NaN NaN 0 0 Median 15906000 7587300 8318900 15906000 7587300 8318900 0 0 0 9763 1412 10030 25838 40430 40430 1 NESAVIVAPTSSGK IPDTWQRELLDVVDKNESAVIVAPTSSGKT KNESAVIVAPTSSGKTYASYYCMEKVLKES K N E G K T 2 0 1 0 0 0 1 1 0 1 0 1 0 0 1 3 1 0 0 2 0 0 14 0 1358.7042 Q8IY21 Q8IY21 778 791 DDX60 Probable ATP-dependent RNA helicase DDX60 no no 2 0.00019192 70.488 3 0.72281 0.60507 NaN 1 Median NaN NaN NaN 0 0 Median 0.72281 0.60507 NaN 1 0 Median 3179400 1180700 1998700 0 0 0 3179400 1180700 1998700 9764 1896 10031 25839;25840;25841 40431;40432;40433;40434 40432 4 NESELEAHLCR KGPKILDHLTMIDNKNESELEAHLCRMMKH IDNKNESELEAHLCRMMKHSMDQTGSKSDK K N E C R M 1 1 1 0 1 0 3 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1356.6092 Q14008;Q8IYN5;H0YDX5 Q14008 1786 1796 CKAP5 Cytoskeleton-associated protein 5 yes no 2 6.788E-05 96.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3155000 0 3155000 3155000 0 3155000 0 0 0 9765 1725 10032 25842 40435 40435 1 NESGTWIQYGEEK PANSVFTTKWIWYWKNESGTWIQYGEEKDK WKNESGTWIQYGEEKDKRKNSNVDSSYLES K N E E K D 0 0 1 0 0 1 3 2 0 1 0 1 0 0 0 1 1 1 1 0 0 0 13 0 1539.6842 Q7Z2W4;A8K9U6;C9J6P4;Q05DV5;H7C5K1 Q7Z2W4 613 625 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.00013735 90.653 2 1 0.98682 0.8308 NaN 1 Median NaN NaN NaN 0 0 Median 0.98682 0.8308 NaN 1 0 Median 15095000 999670 14096000 12962000 0 12962000 2132800 999670 1133200 9766 1873 10033 25843;25844;25845 40436;40437;40438 40436 3 NESLTEHPR NNLLNTKLEKSLEEKNESLTEHPRSTELPK KSLEEKNESLTEHPRSTELPKTHIEQIQKH K N E P R S 0 1 1 0 0 0 2 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 9 0 1081.5152 B2RA91;F8VXG7;Q99590;Q05BS8;A0A0A0MTP7;B4DZM2 B2RA91 370 378 SCAF11;SFRS2IP Protein SCAF11 yes no 2 0.017414 60.91 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2600800 0 2600800 2600800 0 2600800 0 0 0 9767 871 10034 25846;25847 40439;40440 40439 2 NESTPPSEELELDK QRYMSSKIPAVTYPKNESTPPSEELELDKW KNESTPPSEELELDKWKTTMKSSVQEECVS K N E D K W 0 0 1 1 0 0 4 0 0 0 2 1 0 0 2 2 1 0 0 0 0 0 14 0 1586.7312 Q7L0Y3;C9JVB6 Q7L0Y3 52 65 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 0.00012212 81.494 2 2.5982 2.6121 11.191 2 Median 2.5982 2.6121 11.191 2 0 Median NaN NaN NaN 0 0 Median 47771000 13168000 34603000 47771000 13168000 34603000 0 0 0 9768 1871 10035 25848;25849 40441;40442;40443 40443 3 NETGLLSSIK EVDDSLPSGGEKPSKNETGLLSSIKKFIKG EKPSKNETGLLSSIKKFIKGSTPKEERENP K N E I K K 0 0 1 0 0 0 1 1 0 1 2 1 0 0 0 2 1 0 0 0 0 0 10 0 1060.5764 A0A024R5Q8;Q05D32;H0YMH7;H0YNU2;H0YNW9 A0A024R5Q8 44 53 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.00037039 88.495 2 2 1.635 1.2926 19.513 3 Median 1.0286 1.0205 NaN 1 0 Median 1.7452 1.3937 10.66 2 0 Median 38602000 13489000 25113000 29158000 10074000 19084000 9443400 3415200 6028200 9769 187 10036 25850;25851;25852;25853 40444;40445;40446;40447;40448;40449 40444 6 NEVLMVNIGSLSTGGR TEGDKKAAKVQKLSKNEVLMVNIGSLSTGG EVLMVNIGSLSTGGRVSAVKADLGKIVLTN K N E G R V 0 1 2 0 0 0 1 3 0 1 2 0 1 0 0 2 1 0 0 2 0 0 16 0 1645.8458 P41091;Q2VIR3;F8W810 P41091 401 416 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 2.6729E-07 90.412 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9345100 0 9345100 9345100 0 9345100 0 0 0 9770 1559 10037 25854 40450;40451 40450 1310 2 NEVSLVAEGFLPEDGSGR EHGLIEVDPVSREVKNEVSLVAEGFLPEDG SLVAEGFLPEDGSGRIVGVQDLLDQESVCV K N E G R I 1 1 1 1 0 0 3 3 0 0 2 0 0 1 1 2 0 0 0 2 0 0 18 0 1874.901 Q8N516;Q4LE38;O95163 Q8N516 53 70 IKBKAP;IKBKAP variant protein Elongator complex protein 1 yes no 2 0.00085305 49.31 2 1.0731 1.0533 NaN 1 Median 1.0731 1.0533 NaN 1 0 Median NaN NaN NaN 0 0 Median 13782000 4178000 9604200 13782000 4178000 9604200 0 0 0 9771 1419 10038 25855;25856 40452;40453 40453 2 NEVVGLIFR ______________________________ SRPLSRNEVVGLIFRLTIFGAVTYFTIKWM R N E F R L 0 1 1 0 0 0 1 1 0 1 1 0 0 1 0 0 0 0 0 2 0 0 9 0 1045.592 Q8NBU5 Q8NBU5 14 22 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 2 0.0022292 75.109 1 1.4434 1.4467 NaN 1 Median 1.4434 1.4467 NaN 1 0 Median NaN NaN NaN 0 0 Median 17259000 6207400 11052000 17259000 6207400 11052000 0 0 0 9772 1920 10039 25857 40454;40455 40454 2 NEYSLTGLCNR FCSFKIRTKTQSFCRNEYSLTGLCNRSSCP SFCRNEYSLTGLCNRSSCPLANSQYATIKE R N E N R S 0 1 2 0 1 0 1 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 11 0 1325.6034 Q9BXY0;H0YBV6;A0PJ56 Q9BXY0 31 41 MAK16 Protein MAK16 homolog yes no 2 1.2744E-16 152.06 1 2 1.1035 0.90554 7.1155 3 Median 0.77952 0.81456 NaN 1 0 Median 1.1269 0.91895 2.0793 2 0 Median 67741000 35712000 32029000 38800000 21983000 16817000 28941000 13729000 15213000 9773 2016 10040 25858;25859;25860 40456;40457;40458;40459;40460;40461 40457 6 NFAADHFNQEILPVFLNANR EGAKYLKRKDIESIRNFAADHFNQEILPVF HFNQEILPVFLNANRNWNSPVANFIMESQR R N F N R N 3 1 4 1 0 1 1 0 1 1 2 0 0 3 1 0 0 0 0 1 0 0 20 0 2329.1604 A8K4A8;A0A024R8Z9;Q6PI48;Q9H9J7;Q9NVT8 A8K4A8 389 408 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 3 0.011558 21.685 1 1.038 1.0224 NaN 1 Median 1.038 1.0224 NaN 1 0 Median NaN NaN NaN 0 0 Median 14573000 6110800 8461800 14573000 6110800 8461800 0 0 0 9774 266 10041 25861 40462 40462 1 NFAFLEFR APGNPVLAVQINQDKNFAFLEFRSVDETTQ VQINQDKNFAFLEFRSVDETTQAMAFDGII K N F F R S 1 1 1 0 0 0 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 8 0 1042.5236 K7ENG2;B5BU25;P26368 K7ENG2 32 39 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 0.024949 55.531 2 1.1138 1.1343 NaN 1 Median 1.1138 1.1343 NaN 1 0 Median NaN NaN NaN 0 0 Median 7033500 3172700 3860800 7033500 3172700 3860800 0 0 0 9775 1074 10042 25862;25863 40463;40464 40463 2 NFAIGYYLK FSNATFQSERESGDRNFAIGYYLKEKKCFP RESGDRNFAIGYYLKEKKCFPEGTDMVGIL R N F L K E 1 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 2 0 0 0 9 0 1087.5702 A8K132;O94925;Q53S89;Q68D38;B3KM58 A8K132 388 396 GLS;DKFZp686O15119 Glutaminase kidney isoform, mitochondrial no no 2 0.0022292 75.109 1 3.117 3.1144 NaN 1 Median 3.117 3.1144 NaN 1 0 Median NaN NaN NaN 0 0 Median 5641100 1598700 4042400 5641100 1598700 4042400 0 0 0 9776 701;902 10043 25864 40465;40466 40465 2 NFCGPSVTVDASAATK EFILPLPVDTIPETKNFCGPSVTVDASAAT FCGPSVTVDASAATKSMNCLARKHSEREQP K N F T K S 3 0 1 1 1 0 0 1 0 0 0 1 0 1 1 2 2 0 0 2 0 0 16 0 1623.7563 Q96QE3 Q96QE3 1527 1542 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 2 0.00061799 64.55 1 1 4.9194 3.9262 NaN 1 Median NaN NaN NaN 0 0 Median 4.9194 3.9262 NaN 1 0 Median 7483200 463910 7019200 4557000 0 4557000 2926100 463910 2462200 9777 1984 10044 25865;25866 40467;40468;40469 40468 3 NFDEILR KKLKLSILYPATTGRNFDEILRVVISLQLT LYPATTGRNFDEILRVVISLQLTAEKRVAT R N F L R V 0 1 1 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 905.46068 V9HWC7;P30041;A4UCS6 V9HWC7 156 162 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 0.029075 70.912 1 3.8867 4.0682 NaN 1 Median 3.8867 4.0682 NaN 1 0 Median NaN NaN NaN 0 0 Median 12757000 2923300 9833300 12757000 2923300 9833300 0 0 0 9778 1527 10045 25867 40470 40470 1 NFDLRPGVIVR TSQKSERELLEIVKKNFDLRPGVIVRDLDL IVKKNFDLRPGVIVRDLDLKKPIYQRTAAY K N F V R D 0 2 1 1 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 2 0 0 11 1 1284.7303 A0A140VJP5;P31153;B4DEX8;B4E1K2;B4DN74;B4DFQ8;A8K455;Q00266 A0A140VJP5 352 362 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-1 yes no 3 0.031072 40.496 1 1 1.4263 1.4104 21.219 2 Median 1.5139 1.6388 NaN 1 0 Median 1.3438 1.2139 NaN 1 0 Median 25884000 10078000 15806000 22982000 8795800 14187000 2901300 1281800 1619500 9779 606 10046 25868;25869 40471;40472;40473 40471 3 NFDMVIVYK EVELIHFERVQFHLKNFDMVIVYKDYSKKV VQFHLKNFDMVIVYKDYSKKVTMINAIPVA K N F Y K D 0 0 1 1 0 0 0 0 0 1 0 1 1 1 0 0 0 0 1 2 0 0 9 0 1127.5685 Q9Y5B9 Q9Y5B9 854 862 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0005548 89.355 3 2 1.2299 1.2113 23.943 5 Median 1.2694 1.3926 7.2755 3 0 Plateau 1.0196 0.84878 8.8171 2 0 Median 97144000 47366000 49778000 89855000 43971000 45884000 7289100 3394800 3894300 9780 2148 10047;10048 25870;25871;25872;25873;25874 40474;40475;40476;40477;40478;40479;40480 40476 1996 7 NFEALNAR LSPMQKKYYKYILTRNFEALNARGGGNQVS YKYILTRNFEALNARGGGNQVSLLNVVMDL R N F A R G 2 1 2 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 933.46683 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 986 993 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0064228 87.323 2 1 0.70116 0.80976 31.38 3 Median 0.69895 0.7967 2.2981 2 0 Median 1.6904 1.371 NaN 1 0 Median 356640000 202020000 154620000 344650000 197520000 147140000 11981000 4497700 7483600 9781 515 10049 25875;25876;25877 40481;40482;40483 40482 3 NFEHLIPDAPELIHDFLVNEK YVRRNAVLAIYTIYRNFEHLIPDAPELIHD PDAPELIHDFLVNEKDASCKRNAFMMLIHA R N F E K D 1 0 2 2 0 0 3 0 2 2 3 1 0 2 2 0 0 0 0 1 0 0 21 0 2489.2591 P53618;E9PP73 P53618 165 185 COPB1 Coatomer subunit beta yes no 3 8.5747E-16 101.71 1 1.4693 1.4668 NaN 1 Median 1.4693 1.4668 NaN 1 0 Median NaN NaN NaN 0 0 Median 14257000 4834900 9422100 14257000 4834900 9422100 0 0 0 9782 1606 10050 25878 40484;40485 40485 2 NFEVEADDLVTISELGR PRNLDSRTFITIGDRNFEVEADDLVTISEL EVEADDLVTISELGRGAYGVVEKVRHAQSG R N F G R G 1 1 1 2 0 0 3 1 0 1 2 0 0 1 0 1 1 0 0 2 0 0 17 0 1905.932 C7DUW4;Q6FI23;Q6FHG1;Q53EZ9;P46734;E9PRZ0;J3QR49 C7DUW4 56 72 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 2 7.0825E-06 86.291 2 1.6499 1.6915 NaN 1 Median 1.6499 1.6915 NaN 1 0 Median NaN NaN NaN 0 0 Median 16999000 2683500 14315000 16999000 2683500 14315000 0 0 0 9783 1124 10051 25879;25880 40486;40487;40488 40487 3 NFEWVAER DLKEVTPEGLQMVKKNFEWVAERVELLLKS GLQMVKKNFEWVAERVELLLKSESQCRVVV K N F E R V 1 1 1 0 0 0 2 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 8 0 1049.493 E9PBS1;A0A024RD93;P22234;D6RF62;B4DGX3 E9PBS1 248 255 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.020824 58.23 1 1.1078 1.1056 NaN 1 Median 1.1078 1.1056 NaN 1 0 Median NaN NaN NaN 0 0 Median 8986500 4729300 4257200 8986500 4729300 4257200 0 0 0 9784 380 10052 25881 40489 40489 1 NFFNELSHK VLLIDPEPQIAALAKNFFNELSHKGNAIYN IAALAKNFFNELSHKGNAIYNLLPDIISRL K N F H K G 0 0 2 0 0 0 1 0 1 0 1 1 0 2 0 1 0 0 0 0 0 0 9 0 1134.5458 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1151 1159 NCAPD2 Condensin complex subunit 1 yes no 2;3 1.9914E-07 123.98 4 2 1.3582 1.2496 22.407 4 Median 0.98337 1.0035 31.182 2 0 Median 1.5584 1.2635 1.7276 2 0 Median 232290000 114050000 118240000 178140000 93661000 84475000 54156000 20388000 33768000 9785 908 10053 25882;25883;25884;25885;25886;25887 40490;40491;40492;40493;40494;40495;40496 40492 7 NFFVNYR AISDVIGNKSVVQVKNFFVNYRRRFNIDEV NKSVVQVKNFFVNYRRRFNIDEVLQEWEAE K N F Y R R 0 1 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 7 0 958.4661 Q9UKL0;Q9P2K3;H0YF22 Q9UKL0 422 428 RCOR1;RCOR3 REST corepressor 1;REST corepressor 3 yes no 2 0.017829 96.666 1 0.75008 0.74104 NaN 1 Median 0.75008 0.74104 NaN 1 0 Median NaN NaN NaN 0 0 Median 12663000 8845400 3818000 12663000 8845400 3818000 0 0 0 9786 2106 10054 25888 40497 40497 1 NFGAENPDPFVPVLSTAVK INRQTALYTLKLLCKNFGAENPDPFVPVLS ENPDPFVPVLSTAVKLIAPERKEEKNVLGS K N F V K L 2 0 2 1 0 0 1 1 0 0 1 1 0 2 3 1 1 0 0 3 0 0 19 0 2001.0207 B2RWN5;B4E263;Q8N7L7 B2RWN5 1680 1698 HEATR1 yes no 2 7.0489E-12 102.52 2 2 0.99326 0.97069 4.1277 4 Median 0.83548 0.94251 1.4636 2 0 Median 1.1876 1.0065 2.4173 2 0 Median 363950000 183820000 180130000 235950000 126970000 108980000 127990000 56845000 71149000 9787 897 10055 25889;25890;25891;25892 40498;40499;40500;40501;40502 40498 5 NFGASLLLPGLK ______________________________ EERNFGASLLLPGLKQKNSVGFSSQLYGYA R N F L K Q 1 0 1 0 0 0 0 2 0 0 4 1 0 1 1 1 0 0 0 0 0 0 12 0 1228.718 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;D6RH20;D6RJC7 Q6PKB3 11 22 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.00018296 86.624 2 1 1.3108 1.3218 19.289 3 Plateau 1.3089 1.3383 1.7555 2 0 Median 1.0903 0.95885 NaN 1 0 Median 27081000 13108000 13973000 25952000 12570000 13382000 1128500 537420 591090 9788 305 10056 25893;25894;25895 40503;40504;40505;40506;40507 40503 5 NFGEEVDDESLK ELGAKAKEFTNVYIKNFGEEVDDESLKELF YIKNFGEEVDDESLKELFSQFGKTLSVKVM K N F L K E 0 0 1 2 0 0 3 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 12 0 1380.6045 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;H0YCC8 B1ANR0 197 208 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 1.6602E-08 121.6 2 1 2.3431 2.6317 38.781 3 Plateau 2.2905 2.5213 6.0594 2 0 Median 1.6358 1.2933 NaN 1 0 Median 103540000 31679000 71857000 97403000 29350000 68053000 6132600 2328800 3803800 9789 818 10057 25896;25897;25898 40508;40509;40510;40511;40512 40511 5 NFGFSLQDALSR LPPDEYVVTDPEQEKNFGFSLQDALSRARE QEKNFGFSLQDALSRARERRLLEGYEIYVT K N F S R A 1 1 1 1 0 1 0 1 0 0 2 0 0 2 0 2 0 0 0 0 0 0 12 0 1353.6677 Q14676;B4DYH4 Q14676 1978 1989 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 2.0378E-05 103.22 2 0.75734 0.76503 4.058 2 Median 0.75734 0.76503 4.058 2 0 Median NaN NaN NaN 0 0 Median 36623000 21832000 14791000 36623000 21832000 14791000 0 0 0 9790 1738 10058 25899;25900 40513;40514;40515 40514 3 NFGGTVSIIPVGEAK QLSGVLIADDHCTIKNFGGTVSIIPVGEAK NFGGTVSIIPVGEAKTYVNGKHILEITVLR K N F A K T 1 0 1 0 0 0 1 3 0 2 0 1 0 1 1 1 1 0 0 2 0 0 15 0 1487.7984 Q15058 Q15058 854 868 KIF14 Kinesin-like protein KIF14 yes yes 2 0.0436 38.021 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1083100 0 1083100 0 0 0 1083100 0 1083100 9791 1751 10059 25901 40516 40516 1 NFGIGQDIQPK EAKKVVNPLFEKRPKNFGIGQDIQPKRDLT KRPKNFGIGQDIQPKRDLTRFVKWPRYIRL K N F P K R 0 0 1 1 0 2 0 2 0 2 0 1 0 1 1 0 0 0 0 0 0 0 11 0 1215.6248 P62424;Q5T8U3 P62424 38 48 RPL7A 60S ribosomal protein L7a yes no 2 4.8079E-10 130.41 5 2 0.86692 0.96853 20.935 5 Median 0.89493 1.0568 5.6998 3 0 Median 0.82485 0.71058 2.2441 2 0 Median 2285800000 1209900000 1075800000 2040000000 1076500000 963530000 245760000 133440000 112320000 9792 1648 10060 25902;25903;25904;25905;25906;25907;25908 40517;40518;40519;40520;40521;40522;40523;40524;40525;40526;40527;40528;40529;40530;40531;40532;40533 40519 17 NFGIWLR VYCGQVFEKSPLRVKNFGIWLRYDSRSGTH EKSPLRVKNFGIWLRYDSRSGTHNMYREYR K N F L R Y 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 7 0 904.49192 M0R117;B4DM74;Q02543;M0R3D6;M0R1A7;B4DM94;B4DUV3;B2R4C0;Q53HD3;Q32XH3;M0R0P7 M0R117 77 83 RPL18A 60S ribosomal protein L18a yes no 2 0.013378 102.98 4 0.71482 0.82931 21.385 3 Plateau 0.71482 0.82931 21.385 3 0 Plateau NaN NaN NaN 0 0 Median 485490000 283020000 202470000 485490000 283020000 202470000 0 0 0 9793 1003 10061 25909;25910;25911;25912 40534;40535;40536;40537;40538;40539;40540;40541;40542 40537 9 NFGSYVTHETK FDKKYNPTWHCIVGRNFGSYVTHETKHFIY IVGRNFGSYVTHETKHFIYFYLGQVAILLF R N F T K H 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 1 2 0 1 1 0 0 11 0 1281.599 Q6FGH9;Q96FJ2;P63167 Q6FGH9 61 71 DNCL1;DYNLL2;DYNLL1 Dynein light chain 2, cytoplasmic;Dynein light chain 1, cytoplasmic yes no 2 3.2775E-17 160.33 3 2 1.3295 1.3009 3.0255 4 Median 1.1565 1.3324 0.096012 2 0 Median 1.5328 1.2649 0.67633 2 0 Median 491960000 221240000 270720000 417970000 192570000 225400000 73990000 28668000 45322000 9794 1654 10062 25913;25914;25915;25916;25917 40543;40544;40545;40546;40547;40548;40549;40550;40551;40552;40553;40554;40555 40549 13 NFGTVLR NEHIMNVIAIYEVLRNFGTVLRLSPFRFED IAIYEVLRNFGTVLRLSPFRFEDFCAALVS R N F L R L 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 805.44464 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 116 122 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.048672 58.981 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14285000 0 14285000 14285000 0 14285000 0 0 0 9795 1224 10063 25918;25919 40556;40557 40556 2 NFHVFYQLLSGASEELLNK LLEKSRVVKQPRGERNFHVFYQLLSGASEE FYQLLSGASEELLNKLKLERDFSRYNYLSL R N F N K L 1 0 2 0 0 1 2 1 1 0 4 1 0 2 0 2 0 0 1 1 0 0 19 0 2208.1215 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5 E9PDF6 204 222 MYO1B Unconventional myosin-Ib yes no 3 1.088E-06 82.482 2 1.5607 1.5591 10.757 2 Median 1.5607 1.5591 10.757 2 0 Median NaN NaN NaN 0 0 Median 25699000 9585300 16113000 25699000 9585300 16113000 0 0 0 9796 805 10064 25920;25921 40558;40559;40560;40561 40560 4 NFIGDYIGMEEHPELQQFVGK LLLNKKERRRNSINRNFIGDYIGMEEHPEL IGMEEHPELQQFVGKREKIDFADTVTKYDR R N F G K R 0 0 1 1 0 2 3 3 1 2 1 1 1 2 1 0 0 0 1 1 0 0 21 0 2450.1576 Q4KMR3;Q12965;H0YNQ8 Q4KMR3 740 760 MYO1E Unconventional myosin-Ie yes no 3 3.4731E-08 64.203 1 1.0958 1.1656 NaN 1 Median 1.0958 1.1656 NaN 1 0 Median NaN NaN NaN 0 0 Median 16043000 6866100 9177200 16043000 6866100 9177200 0 0 0 9797 1703 10065 25922 40562;40563 40563 1535 2 NFILDQTNVSAAAQR QCLGKFIEIAARKKRNFILDQTNVSAAAQR NFILDQTNVSAAAQRRKMCLFAGFQRKAVV R N F Q R R 3 1 2 1 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 15 0 1646.8376 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 535 549 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 7.3823E-71 208.79 3 2 0.86832 0.88026 37.777 4 Median 1.0363 1.2096 1.6966 2 0 Median 0.73091 0.62969 4.1266 2 0 Median 573330000 287720000 285610000 503480000 247420000 256070000 69847000 40301000 29546000 9798 999 10066 25923;25924;25925;25926;25927 40564;40565;40566;40567;40568;40569;40570;40571;40572;40573;40574 40564 11 NFINNPLAQADWAAK ______________________________ NFINNPLAQADWAAKKLVWVPSDKSGFEPA K N F A K K 4 0 3 1 0 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 0 0 15 0 1671.8369 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;Q5BKV1;B1AH99 A0A024R1N1 15 29 MYH9 Myosin-9 yes no 2 2.8408E-69 199.43 2 1 1.4017 1.5838 2.3003 2 Median 1.4017 1.5838 2.3003 2 0 Median NaN NaN NaN 0 0 Median 182360000 64243000 118120000 159160000 64243000 94916000 23202000 0 23202000 9799 81 10067 25928;25929;25930 40575;40576;40577;40578;40579;40580 40580 6 NFIVWLEDQK HNPAGFNCKDETEFRNFIVWLEDQKIGHYK ETEFRNFIVWLEDQKIGHYKIEDRGNLRNI R N F Q K I 0 0 1 1 0 1 1 0 0 1 1 1 0 1 0 0 0 1 0 1 0 0 10 0 1290.6608 Q5RLJ0;Q549M8;Q9Y224;G3V4C6;G3V4E7 Q5RLJ0 27 36 C14orf166 UPF0568 protein C14orf166 yes no 2 0.00035294 75.378 2 1 1.2509 1.1567 3.4697 2 Median 1.1703 1.1855 NaN 1 0 Median 1.3369 1.1287 NaN 1 0 Median 7320400 3499800 3820500 5776800 2912900 2863900 1543500 586900 956650 9800 1793 10068 25931;25932;25933 40581;40582;40583;40584 40582 4 NFLTSLVAGLSTER KLPQSITNPKLDFFKNFLTSLVAGLSTERT KNFLTSLVAGLSTERTKTSSLESSAVISAF K N F E R T 1 1 1 0 0 0 1 1 0 0 3 0 0 1 0 2 2 0 0 1 0 0 14 0 1506.8042 S4R3T2;H7BYG8;O94822 S4R3T2 313 326 LTN1 E3 ubiquitin-protein ligase listerin yes no 2 0.0020149 67.153 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1056300 1056300 0 1056300 1056300 0 0 0 0 9801 1311 10069 25934;25935 40585;40586 40585 2 NFLVFQGAVESIAMK YSEELEKLGILIKARNFLVFQGAVESIAMK NFLVFQGAVESIAMKNPKERTALFEEISRS R N F M K N 2 0 1 0 0 1 1 1 0 1 1 1 1 2 0 1 0 0 0 2 0 0 15 0 1652.8596 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;Q68EN4;H0Y7K8;Q5H934 Q14683 132 146 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 2.0005E-06 91.937 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7392500 0 7392500 7392500 0 7392500 0 0 0 9802 1739 10070 25936 40587 40587 1572 1 NFLYAWCGK ______________________________ ______________________________ K N F G K R 1 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 0 0 0 9 0 1157.5328 Q08211;Q58F26;Q6PJK6 Q08211 6 14 DHX9 ATP-dependent RNA helicase A yes no 2 0.010186 63.48 1 1 2.0761 1.7205 NaN 1 Median NaN NaN NaN 0 0 Median 2.0761 1.7205 NaN 1 0 Median 1740600 480410 1260200 0 0 0 1740600 480410 1260200 9803 1691 10071 25937;25938 40588;40589 40588 2 NFMIDTYR GKNKSKTPEIYLAYRNFMIDTYRLNPQEYL EIYLAYRNFMIDTYRLNPQEYLTSTACRRN R N F Y R L 0 1 1 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 8 0 1058.4855 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 492 499 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 0.0070918 62.546 2 1.0848 1.1531 5.7792 2 Median 1.0848 1.1531 5.7792 2 0 Median NaN NaN NaN 0 0 Median 55099000 23317000 31782000 55099000 23317000 31782000 0 0 0 9804 1798;321 10072 25939;25940 40590;40591;40592 40592 245 3 NFNAFQK GKEKKIKKFKREKRRNFNAFQKLQTRRNFW KFKREKRRNFNAFQKLQTRRNFWSVTHPAK R N F Q K L 1 0 2 0 0 1 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 7 0 867.4239 A0A024R8V6;Q9P275;B3KMW2;K7EIH0;K7EKN3;K7EKL7 A0A024R8V6 1094 1100 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.03065 68.398 1 1.319 1.344 NaN 1 Median 1.319 1.344 NaN 1 0 Median NaN NaN NaN 0 0 Median 12252000 4748000 7504100 12252000 4748000 7504100 0 0 0 9805 260 10073 25941 40593 40593 1 NFPQTALVSFATTGEK YALLQYHYGTLSLLKNFPQTALVSFATTGE FPQTALVSFATTGEKTVAAVMACRNEVQKS K N F E K T 2 0 1 0 0 1 1 1 0 0 1 1 0 2 1 1 3 0 0 1 0 0 16 0 1709.8625 Q8N766 Q8N766 315 330 EMC1 ER membrane protein complex subunit 1 yes yes 2 0.0057582 35.737 1 0.76211 0.59107 NaN 1 Median NaN NaN NaN 0 0 Median 0.76211 0.59107 NaN 1 0 Median 3500500 1864500 1636000 0 0 0 3500500 1864500 1636000 9806 1913 10074 25942 40594;40595 40594 2 NFQIIEEDAALVEIGPR HVFTFTILDNRIWFRNFQIIEEDAALVEIG QIIEEDAALVEIGPRFVLNLIKIFQGSFGG R N F P R F 2 1 1 1 0 1 3 1 0 3 1 0 0 1 1 0 0 0 0 1 0 0 17 0 1912.9894 Q8TDN6;A0JLQ5 Q8TDN6 219 235 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 1.5128E-34 159.5 3 2 1.0301 1.1366 10.476 5 Median 1.017 1.1151 9.9756 3 0 Plateau 1.3949 1.205 3.3794 2 0 Median 159270000 74732000 84541000 88627000 45064000 43563000 70647000 29668000 40979000 9807 1934 10075 25943;25944;25945;25946;25947 40596;40597;40598;40599;40600;40601;40602;40603;40604 40599 8 NFQLMR HYLDSIENLPCELQRNFQLMRELDQRTEDK ENLPCELQRNFQLMRELDQRTEDKKAEIDI R N F M R E 0 1 1 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 6 0 807.40614 E9PEN0;B7Z6R2;A0A1B0GW41;Q8WYH8;A4KYM7;Q9UNL4;H0YEH7;E9PJ14;A4KYM5 E9PEN0 24 29 ING5;ING4 Inhibitor of growth protein 5;Inhibitor of growth protein 4 yes no 2 0.048543 41.717 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3643200 0 3643200 3643200 0 3643200 0 0 0 9808 633 10076 25948 40605 40605 491 1 NFQNIFPPSATLHLSNIPPSVSEEDLK YGNSPLHRFKKPGSKNFQNIFPPSATLHLS HLSNIPPSVSEEDLKVLFSSNGGVVKGFKF K N F L K V 1 0 3 1 0 1 2 0 1 2 3 1 0 2 4 4 1 0 0 1 0 0 27 0 2993.5135 A6NLN1;A0A0U1RRM4;P26599;A0A0D9SF20 A6NLN1 441 467 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3 9.2586E-16 62.677 2 1.2814 1.3334 14.167 2 Median 1.2814 1.3334 14.167 2 0 Median NaN NaN NaN 0 0 Median 61188000 27454000 33734000 61188000 27454000 33734000 0 0 0 9809 592 10077 25949;25950 40606;40607 40607 2 NFQNIFPPSATLHLSNIPPSVTVDDLK FSNSPLHRFKKPGSKNFQNIFPPSATLHLS HLSNIPPSVTVDDLKNLFIEAGCSVKAFKF K N F L K N 1 0 3 2 0 1 0 0 1 2 3 1 0 2 4 3 2 0 0 2 0 0 27 0 2963.5393 A0A024R163;O95758 A0A024R163 466 492 ROD1;PTBP3 Polypyrimidine tract-binding protein 3 yes no 3 0.0079643 28.951 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6055400 0 6055400 6055400 0 6055400 0 0 0 9810 71 10078 25951;25952 40608;40609;40610 40608 3 NFQPVIIFSFSK GPSNVFKIVKMIMERNFQPVIIFSFSKKDC MERNFQPVIIFSFSKKDCEAYALQMTKLDF R N F S K K 0 0 1 0 0 1 0 0 0 2 0 1 0 3 1 2 0 0 0 1 0 0 12 0 1425.7656 P42285;A8K6I4;B4E3M6 P42285 385 396 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 4.62E-05 98.943 2 1.0312 1.0674 1.714 2 Median 1.0312 1.0674 1.714 2 0 Median NaN NaN NaN 0 0 Median 32613000 15892000 16721000 32613000 15892000 16721000 0 0 0 9811 1563 10079 25953;25954 40611;40612;40613;40614 40614 4 NFSGAELEGLVR LSADVDIKELAVETKNFSGAELEGLVRAAQ ETKNFSGAELEGLVRAAQSTAMNRHIKAST K N F V R A 1 1 1 0 0 0 2 2 0 0 2 0 0 1 0 1 0 0 0 1 0 0 12 0 1290.6568 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;B4DGR3;Q96D47 I3L0N3 430 441 NSF Vesicle-fusing ATPase yes no 2 0.0036902 55.401 2 1.6753 1.6714 NaN 1 Median 1.6753 1.6714 NaN 1 0 Median NaN NaN NaN 0 0 Median 21225000 5349300 15876000 21225000 5349300 15876000 0 0 0 9812 1096 10080 25955;25956 40615;40616 40616 2 NFSVNLYK YGLSFFKPRPGNFERNFSVNLYKVTGQFPW RPGNFERNFSVNLYKVTGQFPWSSLRETDR R N F Y K V 0 0 2 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 8 0 983.50763 Q9Y512 Q9Y512 187 194 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.0026205 99.375 2 1.0467 1.1581 2.2424 2 Median 1.0467 1.1581 2.2424 2 0 Median NaN NaN NaN 0 0 Median 104950000 50675000 54275000 104950000 50675000 54275000 0 0 0 9813 2147 10081 25957;25958 40617;40618;40619 40619 3 NFTMDTESSVYNFEGEDYR EMNEKLSKMGESSLRNFTMDTESSVYNFEG DTESSVYNFEGEDYREKQKIAFTEWIEPPK R N F Y R E 0 1 2 2 0 0 3 1 0 0 0 0 1 2 0 2 2 0 2 1 0 0 19 0 2302.9325 O60264;B7ZAX9;B4DZC0 O60264 702 720 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.2265E-07 79.466 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7614500 0 7614500 7614500 0 7614500 0 0 0 9814 1391 10082 25959;25960 40620;40621;40622 40621 1066 3 NFTMDTESSVYNFEGEDYREK EMNEKLSKMGESSLRNFTMDTESSVYNFEG ESSVYNFEGEDYREKQKIAFTEWIEPPKRE R N F E K Q 0 1 2 2 0 0 4 1 0 0 0 1 1 2 0 2 2 0 2 1 0 0 21 1 2560.07 O60264;B7ZAX9;B4DZC0 O60264 702 722 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 3 3.7055E-16 106.86 2 2 3.1628 3.6761 1.7381 3 Median 3.1537 3.7029 1.0275 2 0 Median 4.1916 3.603 NaN 1 0 Median 100040000 26389000 73654000 85802000 24282000 61521000 14241000 2107200 12134000 9815 1391 10083;10084 25961;25962;25963;25964 40623;40624;40625;40626;40627;40628;40629 40625 1066 7 NFVNTFIQFK DDRKRESTKMAEAIRNFVNTFIQFKKPIIV AEAIRNFVNTFIQFKKPIIVAVNGPAIGLG R N F F K K 0 0 2 0 0 1 0 0 0 1 0 1 0 3 0 0 1 0 0 1 0 0 10 0 1256.6554 Q9Y232;C9JQG7;A8K8L0;A1L473;A8K8F3;C9JMH9;Q9Y6F8;Q9Y6F7 Q9Y232 429 438 CDYL;CDY2B;CDY2A;CDY1 Chromodomain Y-like protein;Testis-specific chromodomain protein Y 1;Testis-specific chromodomain protein Y 2 yes no 2 7.7357E-13 149.65 2 2 1.2918 1.1327 5.0965 3 Median 1.006 1.1327 NaN 1 0 Median 1.3757 1.1277 7.1984 2 0 Median 141390000 51649000 89745000 81581000 28422000 53159000 59814000 23227000 36586000 9816 2121 10085 25965;25966;25967;25968 40630;40631;40632;40633;40634;40635 40632 6 NFVVVMVTK LNDDTALKEYKIDEKNFVVVMVTKPKAVST YKIDEKNFVVVMVTKPKAVSTPAPATTQQS K N F T K P 0 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 4 0 0 9 0 1035.5787 P54727;B4DEA3;Q53F10;B7Z4W4;Q5W0S5;B7ZA74;Q5W0S4;K7ENJ0;K7ELW1;A8K1J3;A0A024R7G8;P54725 P54727 68 76 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A yes no 2 0.019571 41.876 1 1.2732 1.3053 NaN 1 Median 1.2732 1.3053 NaN 1 0 Median NaN NaN NaN 0 0 Median 11801000 5352200 6449100 11801000 5352200 6449100 0 0 0 9817 1610 10086 25969 40636 40636 1398 1 NFVVVMVTKPK LNDDTALKEYKIDEKNFVVVMVTKPKAVST IDEKNFVVVMVTKPKAVSTPAPATTQQSAP K N F P K A 0 0 1 0 0 0 0 0 0 0 0 2 1 1 1 0 1 0 0 4 0 0 11 1 1260.7264 P54727;B4DEA3;Q53F10;B7Z4W4;Q5W0S5;B7ZA74;Q5W0S4 P54727 68 78 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.016451 44.309 1 0.5058 0.43743 NaN 1 Median NaN NaN NaN 0 0 Median 0.5058 0.43743 NaN 1 0 Median 1084200 622760 461450 0 0 0 1084200 622760 461450 9818 1610 10087 25970 40637 40637 1398 1 NFWSVTHPAK KRRNFNAFQKLQTRRNFWSVTHPAKAASLS LQTRRNFWSVTHPAKAASLSYRR_______ R N F A K A 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 1 1 1 0 1 0 0 10 0 1185.5931 A0A024R8V6;Q9P275;B3KMW2;K7EIH0;K7EKN3;K7EKL7;K7EIT7 A0A024R8V6 1106 1115 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.0067028 58.433 1 1.5702 1.2999 NaN 1 Median NaN NaN NaN 0 0 Median 1.5702 1.2999 NaN 1 0 Median 1669100 554980 1114100 0 0 0 1669100 554980 1114100 9819 260 10088 25971 40638 40638 1 NFYELSPHIFALSDEAYR LPIYSPEKVEEYRNRNFYELSPHIFALSDE ELSPHIFALSDEAYRSLRDQDKDQCILITG R N F Y R S 2 1 1 1 0 0 2 0 1 1 2 0 0 2 1 2 0 0 2 0 0 0 18 0 2171.0324 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5;C9JYW1;C9JUP5 E9PDF6 76 93 MYO1B Unconventional myosin-Ib yes no 3 0.0024365 31.111 2 2.3524 2.0372 8.3045 2 Median NaN NaN NaN 0 0 Median 2.3524 2.0372 8.3045 2 0 Median 5140200 1680500 3459700 0 0 0 5140200 1680500 3459700 9820 805 10089 25972;25973 40639;40640 40640 2 NFYLEEEDK ALFVIDTTPGMSADKNFYLEEEDKASEVAI GMSADKNFYLEEEDKASEVAIEEEKEEEED K N F D K A 0 0 1 1 0 0 3 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 9 0 1185.519 Q5QJE6;J3KP30;B7Z854 Q5QJE6 502 510 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 1.4999E-05 122.52 2 2 1.2996 1.2158 13.095 4 Median 0.99882 1.09 14.494 2 0 Median 1.5919 1.2816 6.4855 2 0 Median 104080000 47840000 56241000 84653000 40234000 44418000 19428000 7606200 11822000 9821 1813 10090 25974;25975;25976;25977 40641;40642;40643;40644;40645;40646;40647 40642 7 NFYQEHPDLAR GKKFGNPGEELVKKKNFYQEHPDLARRTAQ VKKKNFYQEHPDLARRTAQEVETYRRSKEI K N F A R R 1 1 1 1 0 1 1 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 11 0 1388.6473 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3QRQ7;J3KRX8;J3QR02;C1IK54;X6RLV5 B4DN41 46 56 DDX5;DKFZp686J01190;DDX5-ETV4 fusion Probable ATP-dependent RNA helicase DDX5 yes no 2;3 3.5382E-05 101.11 5 3 1.4414 1.5576 27.433 7 Plateau 1.4324 1.5331 4.5062 4 0 Median 1.1444 0.97203 7.2487 3 0 Plateau 142640000 64259000 78384000 128700000 57445000 71255000 13943000 6813900 7129600 9822 1009 10091 25978;25979;25980;25981;25982;25983;25984;25985 40648;40649;40650;40651;40652;40653;40654;40655;40656;40657;40658;40659;40660 40650 12 NFYVEHPEVAR RKKKWDLSELPKFEKNFYVEHPEVARLTPY KFEKNFYVEHPEVARLTPYEVDELRRKKEI K N F A R L 1 1 1 0 0 0 2 0 1 0 0 0 0 1 1 0 0 0 1 2 0 0 11 0 1359.6571 Q59F66;Q92841;B4DZQ7 Q59F66 135 145 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 4.7522E-05 99.53 2 1 1.1444 1.0831 64.642 2 Median 1.5981 1.7108 NaN 1 0 Median 0.81949 0.68575 NaN 1 0 Median 78164000 19256000 58908000 74259000 17151000 57108000 3904800 2104600 1800200 9823 1801 10092 25986;25987;25988 40661;40662;40663 40662 3 NFYVEVPELAK EPVDHGKIEYEPFRKNFYVEVPELAKMSQE PFRKNFYVEVPELAKMSQEEVNVFRLEMEG K N F A K M 1 0 1 0 0 0 2 0 0 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1307.6762 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 334 344 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0062767 63.283 2 2 1.1888 1.2031 28.399 4 Linear 1.1602 1.1718 4.8517 2 0 Median 0.91571 0.72474 9.353 2 0 Median 35463000 16263000 19200000 28141000 12266000 15875000 7322200 3997300 3324900 9824 511 10093 25989;25990;25991;25992 40664;40665;40666;40667;40668;40669;40670 40670 7 NGDTLPLSK HLELWRLGSTVATGKNGDTLPLSKNADHLL TVATGKNGDTLPLSKNADHLLHLKTKGPEN K N G S K N 0 0 1 1 0 0 0 1 0 0 2 1 0 0 1 1 1 0 0 0 0 0 9 0 943.49746 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YWK2 Q969X6 369 377 CIRH1A Cirhin yes no 2 0.029695 46.158 1 1.2444 0.96592 NaN 1 Median NaN NaN NaN 0 0 Median 1.2444 0.96592 NaN 1 0 Median 2168100 974410 1193700 0 0 0 2168100 974410 1193700 9825 1955 10094 25993 40671 40671 1 NGEDYICPNCTILQVQDETHSETADQQEAK DCVGISEARGRLLERNGEDYICPNCTILQV QDETHSETADQQEAKWRPGDADGTDCTSIG R N G A K W 2 0 2 3 2 4 4 1 1 2 1 1 0 0 1 1 3 0 1 1 0 0 30 0 3492.5046 Q9BTC0 Q9BTC0 310 339 DIDO1 Death-inducer obliterator 1 yes yes 3 0.047123 9.5444 1 1.7335 1.3724 NaN 1 Median NaN NaN NaN 0 0 Median 1.7335 1.3724 NaN 1 0 Median 4183000 1270100 2913000 0 0 0 4183000 1270100 2913000 9826 2002 10095 25994 40672 40672 1 NGEWYEVLK ISNLLNLFQRAELSKNGEWYEVLKIAADIL RAELSKNGEWYEVLKIAADILIKEEILSEN K N G L K I 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 1 1 1 0 0 9 0 1136.5502 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 569 577 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 4.7173E-05 111.95 2 0.84487 0.85106 2.6847 2 Median 0.84487 0.85106 2.6847 2 0 Median NaN NaN NaN 0 0 Median 42928000 23872000 19056000 42928000 23872000 19056000 0 0 0 9827 897 10096 25995;25996 40673;40674;40675;40676 40673 4 NGGHFVISIK DQTRIVALNAHTFLRNGGHFVISIKANCID HTFLRNGGHFVISIKANCIDSTASAEAVFA R N G I K A 0 0 1 0 0 0 0 2 1 2 0 1 0 1 0 1 0 0 0 1 0 0 10 0 1070.5873 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1 Q96BS4 195 204 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 8.5663E-17 161.17 4 1 0.77912 0.86728 9.0284 5 Median 0.77405 0.87387 7.2374 4 0 Median 0.94232 0.77109 NaN 1 0 Median 420370000 233950000 186420000 385400000 215790000 169620000 34962000 18162000 16800000 9828 1506 10097 25997;25998;25999;26000;26001 40677;40678;40679;40680;40681;40682;40683;40684 40681 8 NGIDILVGTPGR FYGGTPYGGQFERMRNGIDILVGTPGRIKD RMRNGIDILVGTPGRIKDHIQNGKLDLTKL R N G G R I 0 1 1 1 0 0 0 3 0 2 1 0 0 0 1 0 1 0 0 1 0 0 12 0 1210.667 Q9NR30;B4DW97;A0A087WVC1;Q9BQ39;B4DED6;K0J110;Q53FI9 Q9NR30 307 318 DDX21;DDX50;mcdrh Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 2 1.6583E-08 121.61 1 2 1.0922 1.268 19.275 3 Plateau 1.0922 1.268 NaN 1 0 Median 1.1081 0.92053 7.7078 2 0 Median 101830000 49321000 52509000 64274000 30389000 33885000 37556000 18932000 18624000 9829 2065;416 10098 26002;26003;26004 40685;40686;40687 40686 3 NGIGIHEHASIDLPGIK TCSGAFKEGSLRIIRNGIGIHEHASIDLPG IGIHEHASIDLPGIKGLWPLRSDPNRETDD R N G I K G 1 0 1 1 0 0 1 3 2 4 1 1 0 0 1 1 0 0 0 0 0 0 17 0 1769.9424 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 392 408 DDB1 DNA damage-binding protein 1 yes no 3 2.4807E-05 47.204 2 1.1247 0.9047 9.4282 2 Median NaN NaN NaN 0 0 Median 1.1247 0.9047 9.4282 2 0 Median 19182000 9183600 9998800 0 0 0 19182000 9183600 9998800 9830 1770 10099 26005;26006 40688;40689;40690 40689 3 NGKPITSEDIK SRLNIIIVAEGAIDKNGKPITSEDIKNLVV AIDKNGKPITSEDIKNLVVKRLGYDTRVTV K N G I K N 0 0 1 1 0 0 1 1 0 2 0 2 0 0 1 1 1 0 0 0 0 0 11 1 1200.635 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162 A0A024R0Y5 270 280 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 3 0.012407 40.496 1 1.4616 1.7339 NaN 1 Median 1.4616 1.7339 NaN 1 0 Median NaN NaN NaN 0 0 Median 26919000 10955000 15963000 26919000 10955000 15963000 0 0 0 9831 61 10100 26007 40691 40691 1 NGLACLACGPQLEVVNSITGER ITLESVLRGKFAAGKNGLACLACGPQLEVV CGPQLEVVNSITGERLSAYRFSGVNEQPPV K N G E R L 2 1 2 0 2 1 2 3 0 1 3 0 0 0 1 1 1 0 0 2 0 0 22 0 2357.1468 Q8WYP5;Q96M44;C9J5C5 Q8WYP5 43 64 AHCTF1 Protein ELYS yes no 2 3.4502E-07 79.317 1 1 1.7007 1.5416 40.059 2 Median 1.1523 1.1613 NaN 1 0 Median 2.5102 2.0464 NaN 1 0 Median 23312000 8523000 14789000 10594000 4887300 5706500 12719000 3635700 9082900 9832 1945 10101 26008;26009 40692;40693 40693 2 NGLLFTYGVTGSGK DVVANPLVNDLIHGKNGLLFTYGVTGSGKT KNGLLFTYGVTGSGKTHTMTGSPGEGGLLP K N G G K T 0 0 1 0 0 0 0 4 0 0 2 1 0 1 0 1 2 0 1 1 0 0 14 0 1412.73 H7BYN4;Q02241;H0YME6 H7BYN4 105 118 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 9.9732E-05 85.288 1 0.89741 0.89742 NaN 1 Median 0.89741 0.89742 NaN 1 0 Median NaN NaN NaN 0 0 Median 18810000 7411100 11399000 18810000 7411100 11399000 0 0 0 9833 1312 10102 26010 40694 40694 1 NGLSLAALK VSELITKAVAASKERNGLSLAALKKALAAG AASKERNGLSLAALKKALAAGGYDVEKNNS R N G L K K 2 0 1 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 885.52837 P16401 P16401 58 66 HIST1H1B Histone H1.5 yes yes 1;2 0.001665 82.452 4 2 0.59791 0.69704 28.161 6 Median 0.60123 0.70833 1.7468 4 0 Median 0.47948 0.40863 2.1728 2 0 Median 1601600000 999870000 601760000 1457800000 902440000 555390000 143790000 97426000 46368000 9834 1489 10103 26011;26012;26013;26014;26015;26016 40695;40696;40697;40698;40699;40700;40701;40702;40703;40704;40705;40706;40707;40708;40709;40710;40711 40698 16 NGLSLAALKK VSELITKAVAASKERNGLSLAALKKALAAG ASKERNGLSLAALKKALAAGGYDVEKNNSR R N G K K A 2 0 1 0 0 0 0 1 0 0 3 2 0 0 0 1 0 0 0 0 0 0 10 1 1013.6233 P16401 P16401 58 67 HIST1H1B Histone H1.5 yes yes 2 5.5686E-08 119.21 2 2 0.63266 0.6241 40.555 4 Median 0.76817 0.89553 8.5527 2 0 Median 0.52541 0.44669 4.7856 2 0 Median 71218000 43538000 27680000 30926000 17228000 13698000 40292000 26309000 13983000 9835 1489 10104 26017;26018;26019;26020 40712;40713;40714;40715;40716;40717 40717 6 NGPLEEDGERYDEDEEAAK RHSSPHQSEDEEDPRNGPLEEDGERYDEDE EEDGERYDEDEEAAKDRRNIRAPEWPRRAS R N G A K D 2 1 1 3 0 0 6 2 0 0 1 1 0 0 1 0 0 0 1 0 0 0 19 1 2164.9033 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 665 683 GYS1 Glycogen [starch] synthase, muscle yes no 3 5.4682E-06 71.263 2 2 0.45319 0.43235 7.8578 4 Median 0.39125 0.46389 10.231 2 0 Median 0.49411 0.42558 2.5033 2 0 Median 161520000 116680000 44841000 117120000 86474000 30644000 44399000 30202000 14197000 9836 1479 10105 26021;26022;26023;26024 40718;40719;40720;40721;40722;40723 40718 6 NGPLEVAGAAVSAGHGLPAK GGKEFVEAVLELRKKNGPLEVAGAAVSAGH VAGAAVSAGHGLPAKFVIHCNSPVWGADKC K N G A K F 5 0 1 0 0 0 1 4 1 0 2 1 0 0 2 1 0 0 0 2 0 0 20 0 1814.9639 O75367;Q59FH0;B4DJC3 O75367 252 271 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 2.2325E-31 196.18 5 4 1.1598 1.1788 12.665 8 Median 1.0856 1.2917 4.1962 4 0 Median 1.1897 1.0424 3.4659 4 0 Median 6027000000 3035600000 2991400000 5068800000 2596700000 2472000000 958280000 438880000 519400000 9837 1401 10106 26025;26026;26027;26028;26029;26030;26031;26032;26033 40724;40725;40726;40727;40728;40729;40730;40731;40732;40733;40734;40735;40736;40737;40738;40739;40740;40741;40742;40743;40744;40745;40746;40747;40748;40749;40750;40751;40752;40753;40754;40755 40737 32 NGQDLGVAFK FANFESDEVELSYAKNGQDLGVAFKISKEV LSYAKNGQDLGVAFKISKEVLAGRPLFPHV K N G F K I 1 0 1 1 0 1 0 2 0 0 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1047.5349 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5;Q5RI18 B4DLR3 383 392 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 1.621E-09 131.06 1 1 0.91694 0.86976 59.603 2 Median 1.1778 1.3257 NaN 1 0 Median 0.71383 0.57064 NaN 1 0 Median 127690000 60233000 67461000 118750000 55200000 63548000 8945600 5032800 3912800 9838 999 10107 26034;26035 40756;40757;40758;40759 40756 4 NGQVIGIGAGQQSR IAVKYTQSNSVCYAKNGQVIGIGAGQQSRI KNGQVIGIGAGQQSRIHCTRLAGDKANYWW K N G S R I 1 1 1 0 0 3 0 4 0 2 0 0 0 0 0 1 0 0 0 1 0 0 14 0 1383.7219 V9HWH7;B2R7P8;P31939;B4DP06;H7C1S2 V9HWH7 438 451 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.00041083 79.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9622900 0 9622900 9622900 0 9622900 0 0 0 9839 852 10108 26036 40760 40760 1 NGSFGVLVATNVAAR DIPQKQREITLKGFRNGSFGVLVATNVAAR NGSFGVLVATNVAARGLDIPEVDLVIQSSP R N G A R G 3 1 2 0 0 0 0 2 0 0 1 0 0 1 0 1 1 0 0 3 0 0 15 0 1474.7892 Q9NR30 Q9NR30 485 499 DDX21 Nucleolar RNA helicase 2 yes yes 2 1.6187E-05 88.338 2 2 1.2697 1.4564 15.499 4 Linear 1.267 1.4096 2.5147 2 0 Median 1.2717 1.0793 1.196 2 0 Median 149130000 68247000 80879000 101970000 47327000 54640000 47160000 20920000 26239000 9840 2065 10109 26037;26038;26039;26040 40761;40762;40763;40764;40765;40766;40767 40763 7 NGTGVLILSPTR IPAVELIVKLRFMPRNGTGVLILSPTRELA MPRNGTGVLILSPTRELAMQTFGVLKELMT R N G T R E 0 1 1 0 0 0 0 2 0 1 2 0 0 0 1 1 2 0 0 1 0 0 12 0 1226.6983 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 126 137 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 5.9197E-09 154.66 2 1 1.0053 1.1538 5.2953 3 Median 0.99642 1.1389 1.8386 2 0 Median 1.4836 1.2448 NaN 1 0 Median 274930000 146720000 128210000 249050000 136450000 112600000 25879000 10263000 15616000 9841 303 10110 26041;26042;26043 40768;40769;40770;40771;40772;40773 40769 6 NGTLILSPVDIK SILSNGRIGQVGKFKNGTLILSPVDIKKIN KFKNGTLILSPVDIKKINSSRVAK______ K N G I K K 0 0 1 1 0 0 0 1 0 2 2 1 0 0 1 1 1 0 0 1 0 0 12 0 1268.734 Q8NDD1;Q5TBI2 Q8NDD1 274 285 C1orf131 Uncharacterized protein C1orf131 yes no 2 0.00021532 81.865 2 1 1.1163 1.2053 14.54 3 Plateau 1.2058 1.2053 10.219 2 0 Median 1.1163 0.96868 NaN 1 0 Median 17454000 7633400 9821000 16103000 7040100 9063400 1350900 593300 757590 9842 1925 10111 26044;26045;26046 40774;40775;40776;40777 40774 4 NGTLSVSDTTVGSK LMNKTLEDRLKIEAKNGTLSVSDTTVGSKQ KNGTLSVSDTTVGSKQLTFTLKRSEQQKKQ K N G S K Q 0 0 1 1 0 0 0 2 0 0 1 1 0 0 0 3 3 0 0 2 0 0 14 0 1364.6783 Q9BSC4 Q9BSC4 628 641 NOL10 Nucleolar protein 10 yes yes 2 8.8581E-07 110.08 1 2 1.7185 1.4031 7.6767 3 Median 1.1407 1.2335 NaN 1 0 Median 1.7425 1.4086 0.56121 2 0 Median 58122000 24846000 33277000 42896000 19258000 23638000 15226000 5587200 9638800 9843 2000 10112 26047;26048;26049 40778;40779;40780;40781;40782 40778 5 NGTQVHGTITGVDVSMNTHLK FLMKLSHETVTIELKNGTQVHGTITGVDVS GTITGVDVSMNTHLKAVKMTLKNREPVQLE K N G L K A 0 0 2 1 0 1 0 3 2 1 1 1 1 0 0 1 4 0 0 3 0 0 21 0 2208.0957 P62314;Q7Z5A3 P62314 21 41 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes no 3 2.8697E-09 82.635 1 1.6739 1.707 NaN 1 Median 1.6739 1.707 NaN 1 0 Median NaN NaN NaN 0 0 Median 17116000 5936100 11180000 17116000 5936100 11180000 0 0 0 9844 1644 10113 26050 40783;40784 40784 1424 2 NGVALTALDQDHVAVLGSPLAASK VKSLLLKAVVSGNARNGVALTALDQDHVAV QDHVAVLGSPLAASKECLSVWNIKFQTLQT R N G S K E 5 0 1 2 0 1 0 2 1 0 4 1 0 0 1 2 1 0 0 3 0 0 24 0 2346.2543 Q9H8H0;J3QR28 Q9H8H0 261 284 NOL11 Nucleolar protein 11 yes no 3 1.4178E-12 73.036 2 0.92582 0.9428 29.878 2 Median 0.92582 0.9428 29.878 2 0 Median NaN NaN NaN 0 0 Median 30051000 16227000 13825000 30051000 16227000 13825000 0 0 0 9845 2042 10114 26051;26052 40785;40786;40787;40788 40785 4 NGVMPSHFSR AGVGSMTKIYGGRQRNGVMPSHFSRGSKSV GGRQRNGVMPSHFSRGSKSVARRVLQALEG R N G S R G 0 1 1 0 0 0 0 1 1 0 0 0 1 1 1 2 0 0 0 1 0 0 10 0 1130.5291 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 B0ZBD0 85 94 RPS19 40S ribosomal protein S19 yes no 2;3 4.3051E-08 107.21 2 1.2976 1.4357 NaN 1 Median 1.2976 1.4357 NaN 1 0 Median NaN NaN NaN 0 0 Median 65170000 17639000 47531000 65170000 17639000 47531000 0 0 0 9846 811 10115 26053;26054 40789;40790 40789 648 2 NGWMEQISGK YQMHLLKKTLQKCEKNGWMEQISGKGFSGT QKCEKNGWMEQISGKGFSGTFQLCFPYYPS K N G G K G 0 0 1 0 0 1 1 2 0 1 0 1 1 0 0 1 0 1 0 0 0 0 10 0 1148.5284 Q5SSJ5;B4E0N8 Q5SSJ5 394 403 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0035622 57.55 2 0.73756 0.77233 8.7046 2 Median 0.73756 0.77233 8.7046 2 0 Median NaN NaN NaN 0 0 Median 36172000 21513000 14659000 36172000 21513000 14659000 0 0 0 9847 1817 10116 26055;26056 40791;40792;40793 40792 1676 3 NGYGFVEFEDSR RFFSGYGRLLEVDLKNGYGFVEFEDSRDAD DLKNGYGFVEFEDSRDADDAVYELNGKELC K N G S R D 0 1 1 1 0 0 2 2 0 0 0 0 0 2 0 1 0 0 1 1 0 0 12 0 1418.6103 V9HVZ0;A8K588;Q13247;Q59GY3;B5BU15 V9HVZ0 35 46 HEL-S-91;SRSF6;SFRS6 Serine/arginine-rich splicing factor 6 yes no 2 0.0020652 59.542 1 1 1.0511 1.0128 35.785 2 Median 1.2049 1.3044 NaN 1 0 Median 0.91693 0.78638 NaN 1 0 Median 30139000 15208000 14931000 27311000 13585000 13726000 2828300 1623300 1205000 9848 748 10117 26057;26058 40794;40795 40794 2 NHCVPPYSESK NELLQKAVITPDFEKNHCVPPYSESKYQLQ DFEKNHCVPPYSESKYQLQKKRRKERQKTA K N H S K Y 0 0 1 0 1 0 1 0 1 0 0 1 0 0 2 2 0 0 1 1 0 0 11 0 1316.5819 Q5QJE6 Q5QJE6 616 626 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 1.4269E-05 107.15 2 1 0.97599 0.977 16.33 3 Median 0.93004 0.95031 3.9174 2 0 Median 1.6036 1.2558 NaN 1 0 Median 22547000 11567000 10981000 18673000 10071000 8602200 3874100 1495300 2378800 9849 1813 10118 26059;26060;26061 40796;40797;40798;40799;40800 40799 5 NHDEESLECLCR LTEAIMHDCVVKLLKNHDEESLECLCRLLT LLKNHDEESLECLCRLLTTIGKDLDFEKAK K N H C R L 0 1 1 1 2 0 3 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1560.6297 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;B4DZE1;B4DH17;A0A0A0MSA7;A0A0U1RQK7;Q59GJ0;O43432 E7EX73 763 774 EIF4G1;EIF4G1 variant protein;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.0055954 63.32 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9850 896 10119 26062 40801 40801 1 NHDTAISSHTVK STTKPLFSSGQFSMKNHDTAISSHTVKSVL SMKNHDTAISSHTVKSVLGQNSKLAEPLRK K N H V K S 1 0 1 1 0 0 0 0 2 1 0 1 0 0 0 2 2 0 0 1 0 0 12 0 1308.6422 Q8NG31;E9PPJ1 Q8NG31 738 749 CASC5 Protein CASC5 yes no 2 2.1874E-05 102.52 2 0.73785 0.81049 26.773 2 Median 0.73785 0.81049 26.773 2 0 Median NaN NaN NaN 0 0 Median 6078200 3236900 2841300 6078200 3236900 2841300 0 0 0 9851 1928 10120 26063;26064 40802;40803;40804 40804 3 NHEEEISTLR MQIEGLKEELAYLKKNHEEEISTLRGQVGG AYLKKNHEEEISTLRGQVGGQVSVEVDSAP K N H L R G 0 1 1 0 0 0 3 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1226.5891 B4DE59;K7EMS3 B4DE59 380 389 KRT19 no no 2 6.9913E-05 82.749 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5228600 5228600 0 5228600 5228600 0 0 0 0 9852 964 10121 26065;26066 40805;40806 40806 2 NHEEEMNALR MQIESLKEELAYLKKNHEEEMNALRGQVGG AYLKKNHEEEMNALRGQVGGDVNVEMDAAP K N H L R G 1 1 2 0 0 0 3 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1241.5459 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;CON__Q04695;Q04695;F5GWP8;Q14666;K7EPJ9;K7ESE1 CON__P02533 252 261 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 4.6773E-05 101.46 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7318100 7318100 0 1790400 1790400 0 5527700 5527700 0 + 9853 1150;1168 10122;10123 26067;26068;26069 40807;40808;40809 40809 857 3 NHEIVPGSLIASIASLK RDDFRVLTAVEMGMKNHEIVPGSLIASIAS EIVPGSLIASIASLKHGGCNKVLRELVKHK K N H L K H 2 0 1 0 0 0 1 1 1 3 2 1 0 0 1 3 0 0 0 1 0 0 17 0 1747.9832 Q9BVS4 Q9BVS4 29 45 RIOK2 Serine/threonine-protein kinase RIO2 yes yes 3 0.034631 17.895 1 1.3186 1.1655 NaN 1 Median NaN NaN NaN 0 0 Median 1.3186 1.1655 NaN 1 0 Median 891210 469430 421790 0 0 0 891210 469430 421790 9854 2010 10124 26070 40810 40810 1 NHELSGLNK YSHEVLSEENFKVLKNHELSGLNKEELAVL NFKVLKNHELSGLNKEELAVLLLQSDPFFM K N H N K E 0 0 2 0 0 0 1 1 1 0 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1010.5145 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 123 131 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 1.711E-06 136.21 1 1 1.3567 1.2206 39.047 2 Median 1.5749 1.6087 NaN 1 0 Median 1.1687 0.9261 NaN 1 0 Median 33095000 14323000 18772000 28264000 11948000 16316000 4830900 2374200 2456700 9855 1873 10125 26071;26072 40811;40812 40811 2 NHFAEIETELQAELVR KTSCADMQKMLFEERNHFAEIETELQAELV HFAEIETELQAELVRMEQQHQEKVLYLLSQ R N H V R M 2 1 1 0 0 1 4 0 1 1 2 0 0 1 0 0 1 0 0 1 0 0 16 0 1897.9534 Q59HG1;O95239;B3KNC0 Q59HG1 910 925 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 1.1338E-25 148.03 7 4 1.3916 1.1772 16.431 6 Median 0.85191 0.90638 8.039 2 0 Median 1.4541 1.2373 5.2762 4 0 Median 124160000 68120000 56040000 64801000 42371000 22430000 59359000 25748000 33611000 9856 1803 10126 26073;26074;26075;26076;26077;26078;26079;26080;26081;26082;26083 40813;40814;40815;40816;40817;40818;40819;40820;40821;40822;40823;40824;40825;40826;40827;40828;40829 40829 17 NHLETLSR FAKQSNNVLVYDLLKNHLETLSRVAEETIK LVYDLLKNHLETLSRVAEETIKDYFEARLA K N H S R V 0 1 1 0 0 0 1 0 1 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 968.50394 Q99549 Q99549 721 728 MPHOSPH8 M-phase phosphoprotein 8 yes yes 2 0.013762 64.567 2 1.5186 1.2903 10.309 2 Median NaN NaN NaN 0 0 Median 1.5186 1.2903 10.309 2 0 Median 7910900 2933200 4977700 0 0 0 7910900 2933200 4977700 9857 1994 10127 26084;26085 40830;40831 40831 2 NHMWIFVNALIENPTFDSQTK KKNKGGVAVKAHQVKNHMWIFVNALIENPT VNALIENPTFDSQTKENMTLQPKSFGSTCQ K N H T K E 1 0 3 1 0 1 1 0 1 2 1 1 1 2 1 1 2 1 0 1 0 0 21 0 2504.2158 P11388 P11388 358 378 TOP2A DNA topoisomerase 2-alpha yes yes 3 1.5028E-11 90.968 2 3 0.93626 0.94197 27.191 5 Median 0.94894 0.97536 4.9262 2 0 Median 1.333 1.0888 33.471 3 0 Plateau 154880000 84001000 70875000 60178000 32484000 27694000 94699000 51517000 43182000 9858 1471 10128;10129 26086;26087;26088;26089;26090 40832;40833;40834;40835;40836;40837;40838;40839;40840 40838 1208 8 NHPLYALK KHMDQPLPTAIGLYKNHPLYALKRHLLKYE TAIGLYKNHPLYALKRHLLKYEAIYPETAA K N H L K R 1 0 1 0 0 0 0 0 1 0 2 1 0 0 1 0 0 0 1 0 0 0 8 0 954.5287 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPK7;D2CPK0;D2CPJ1;D2CPJ3;D2CPI8 A0A024R2M8 643 650 XPC DNA repair protein complementing XP-C cells no no 2 0.009492 74.415 2 2 1.0284 0.82054 16.724 4 Median 0.86331 0.89592 27.27 2 0 Median 1.0284 0.82054 4.2624 2 0 Median 72815000 39157000 33658000 63750000 34646000 29104000 9065300 4511100 4554200 9859 118;1184 10130 26091;26092;26093;26094 40841;40842;40843;40844;40845 40841 5 NHTLALTETGSVFAFGENK EGLSHEVIVSAACGRNHTLALTETGSVFAF ALTETGSVFAFGENKMGQLGLGNQTDAVPS R N H N K M 2 0 2 0 0 0 2 2 1 0 2 1 0 2 0 1 3 0 0 1 0 0 19 0 2035.0011 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 147 165 RCC2 Protein RCC2 yes no 3 0.0027676 27.376 2 0.62633 0.5019 2.8661 2 Median NaN NaN NaN 0 0 Median 0.62633 0.5019 2.8661 2 0 Median 4750800 3189800 1561000 0 0 0 4750800 3189800 1561000 9860 301 10131 26095;26096 40846;40847;40848 40846 3 NHVCQYYIYELQK AIEFLTLENEIFRKKNHVCQYYIYELQKRI KKNHVCQYYIYELQKRIAEMETQKEKIHED K N H Q K R 0 0 1 0 1 2 1 0 1 1 1 1 0 0 0 0 0 0 3 1 0 0 13 0 1756.8243 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 320 332 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 2.1826E-24 161.99 2 2 1.6087 1.2685 38.167 3 Median 0.65618 0.67771 NaN 1 0 Median 1.6665 1.3096 4.5099 2 0 Median 47318000 16934000 30384000 13028000 4719300 8308400 34290000 12215000 22075000 9861 2070 10132 26097;26098;26099;26100 40849;40850;40851;40852;40853;40854;40855 40853 7 NIANTLMAK LWLESVRLEYRAGLKNIANTLMAKALQECP YRAGLKNIANTLMAKALQECPNSGILWSEA K N I A K A 2 0 2 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 9 0 974.5219 O94906 O94906 794 802 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.016543 44.377 1 1.1761 1.174 NaN 1 Median 1.1761 1.174 NaN 1 0 Median NaN NaN NaN 0 0 Median 14900000 7070700 7829400 14900000 7070700 7829400 0 0 0 9862 1418 10133 26101 40856 40856 1109 1 NICFTVWDVGGQDR TIPTIGFNVETVEYKNICFTVWDVGGQDRI KNICFTVWDVGGQDRIRPLWKHYFQNTQGL K N I D R I 0 1 1 2 1 1 0 2 0 1 0 0 0 1 0 0 1 1 0 2 0 0 14 0 1665.7569 P18085;C9JPM4;C9JAK5 P18085 60 73 ARF4 ADP-ribosylation factor 4 yes no 2 0.0088554 37.995 1 2 1.2549 1.1283 37.54 3 Median 2.0088 2.0306 NaN 1 0 Median 1.2228 1.0674 7.846 2 0 Median 14981000 6256100 8724800 9800300 3889100 5911200 5180600 2367000 2813600 9863 1498 10134 26102;26103;26104 40857;40858;40859 40857 3 NIDAGEMVIEYAGNVIR VYRSPIHGRGLFCKRNIDAGEMVIEYAGNV DAGEMVIEYAGNVIRSIQTDKREKYYDSKG R N I I R S 2 1 2 1 0 0 2 2 0 3 0 0 1 0 0 0 0 0 1 2 0 0 17 0 1862.9196 Q03164;B4DIJ7 Q03164 3848 3864 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180;Histone-lysine N-methyltransferase yes no 2 0.00043425 58.674 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7352200 0 7352200 7352200 0 7352200 0 0 0 9864 1680 10135 26105;26106 40860;40861;40862 40860 1492 3 NIDDGTSDRPYSHALVAGIDR VLAGRYSGRKAVIVKNIDDGTSDRPYSHAL SDRPYSHALVAGIDRYPRKVTAAMGKKKIA K N I D R Y 2 2 1 4 0 0 0 2 1 2 1 0 0 0 1 2 1 0 1 1 0 0 21 1 2271.088 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7 E4W6B6 28 48 RPL27 60S ribosomal protein L27 yes no 3;4 1.3112E-08 75.358 4 3 0.83399 0.86682 22.258 7 Median 0.83914 0.91365 11.46 4 0 Median 0.9264 0.58687 23.133 3 0 Plateau 401840000 223890000 177950000 333180000 184740000 148440000 68659000 39149000 29511000 9865 93 10136 26107;26108;26109;26110;26111;26112;26113 40863;40864;40865;40866;40867;40868;40869;40870;40871;40872;40873 40869 10 NIDEHANEDVER ITNGKSFENISKWLRNIDEHANEDVERMLL WLRNIDEHANEDVERMLLGNKCDMDDKRVV R N I E R M 1 1 2 2 0 0 3 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 12 0 1439.6277 P61026;Q53T70 P61026 106 117 RAB10 Ras-related protein Rab-10 yes no 2;3 1.6489E-05 105.03 2 1 1.8099 1.9297 24.115 3 Median 1.8542 1.9477 1.3109 2 0 Median 1.4718 1.2831 NaN 1 0 Median 39847000 13561000 26286000 38368000 12943000 25425000 1478700 617990 860750 9866 1627 10137 26114;26115;26116 40874;40875;40876 40875 3 NIEDVIAQGIGK DDDRLNKVISELNGKNIEDVIAQGIGKLAS NGKNIEDVIAQGIGKLASVPAGGAVAVSAA K N I G K L 1 0 1 1 0 1 1 2 0 3 0 1 0 0 0 0 0 0 0 1 0 0 12 0 1255.6772 A0A024RCA7;P05387;H0YDD8 A0A024RCA7 50 61 RPLP2 60S acidic ribosomal protein P2 yes no 2 1.8037E-12 126.03 2 2 0.8956 1.0501 45.138 4 Linear 0.86609 0.99531 10.011 2 0 Median 0.56931 0.45886 4.0615 2 0 Median 420440000 220330000 200110000 380630000 194600000 186020000 39817000 25732000 14084000 9867 356 10138 26117;26118;26119;26120 40877;40878;40879;40880;40881;40882;40883 40878 7 NIEDYIHR DIQDVSMVVNYDMAKNIEDYIHRIGRTGRA VNYDMAKNIEDYIHRIGRTGRAGKSGVAIT K N I H R I 0 1 1 1 0 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 8 0 1058.5145 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 724 731 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0092293 75.213 2 1.0594 1.1145 6.4271 2 Median 1.0594 1.1145 6.4271 2 0 Median NaN NaN NaN 0 0 Median 58083000 31997000 26086000 58083000 31997000 26086000 0 0 0 9868 63 10139 26121;26122 40884;40885;40886;40887 40886 4 NIEEHASADVEK ITNEKSFDNIRNWIRNIEEHASADVEKMIL WIRNIEEHASADVEKMILGNKCDVNDKRQV R N I E K M 2 0 1 1 0 0 3 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 12 0 1340.6208 A0A024R7I3;P61006 A0A024R7I3 105 116 RAB8A Ras-related protein Rab-8A yes no 2 7.0022E-30 173.76 2 1.4795 1.5579 NaN 1 Median 1.4795 1.5579 NaN 1 0 Median NaN NaN NaN 0 0 Median 26786000 8414600 18372000 26786000 8414600 18372000 0 0 0 9869 226 10140 26123;26124 40888;40889;40890 40889 3 NIEIDSPYEISR IDSLTVKIILPEGAKNIEIDSPYEISRAPD GAKNIEIDSPYEISRAPDELHYTYLDTFGR K N I S R A 0 1 1 1 0 0 2 0 0 3 0 0 0 0 1 2 0 0 1 0 0 0 12 0 1434.6991 Q96HX3;Q6IBR0;Q53EP4;P04843;B4DL99;B7Z4L4;B4DNJ5 Q96HX3 341 352 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 1.3787E-05 106.29 2 1.0415 1.0507 9.3895 2 Median 1.0415 1.0507 9.3895 2 0 Median NaN NaN NaN 0 0 Median 32990000 11299000 21691000 32990000 11299000 21691000 0 0 0 9870 1444 10141 26125;26126 40891;40892 40891 2 NIEMTQEDVR DRGPVLEALVARAIRNIEMTQEDVRLIGLS ARAIRNIEMTQEDVRLIGLSATLPNYEDVA R N I V R L 0 1 1 1 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1233.566 O75643;A4FU77;Q9H8B9 O75643 638 647 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.1399E-12 122.13 3 2 0.72562 0.64112 4.4606 2 Median NaN NaN NaN 0 0 Median 0.72562 0.64112 4.4606 2 0 Median 23490000 21525000 1965300 19162000 19162000 0 4327900 2362600 1965300 9871 1411 10142 26127;26128;26129;26130;26131 40893;40894;40895;40896;40897;40898 40893 1099 6 NIFAILQSVK TRTTILQSTGKNFSKNIFAILQSVKAREEG KNFSKNIFAILQSVKAREEGRAPEQRPAPN K N I V K A 1 0 1 0 0 1 0 0 0 2 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1131.6652 Q6P1J9;A0A0S2Z5M9;B4DV47;A0A0S2Z5N1 Q6P1J9 248 257 CDC73 Parafibromin yes no 2 7.8785E-05 98.033 2 2 1.8554 1.7466 5.1876 4 Linear 1.7036 1.7116 6.3695 2 0 Median 1.9883 1.6065 0.020406 2 0 Median 63740000 23075000 40665000 56209000 20724000 35485000 7531200 2350700 5180500 9872 1851 10143 26132;26133;26134;26135 40899;40900;40901;40902;40903;40904 40901 6 NIGLGFK LLGETGKEKLPRYYKNIGLGFKTPKEAIEG EKLPRYYKNIGLGFKTPKEAIEGTYIDKKC K N I F K T 0 0 1 0 0 0 0 2 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 747.42792 P62280;M0QZC5 P62280 39 45 RPS11 40S ribosomal protein S11 yes no 2 0.032919 64.776 2 1 0.8971 1.0393 9.4574 3 Plateau 0.88996 1.0383 0.14272 2 0 Median 1.0456 0.88139 NaN 1 0 Median 716910000 374440000 342470000 661160000 349160000 312000000 55752000 25277000 30475000 9873 1641 10144 26136;26137;26138 40905;40906;40907;40908 40905 4 NIGQAIAAAVNAK N I A K 5 0 2 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 0 1 0 0 13 0 1239.6935 REV__Q8TD57 yes yes 2 0.0043451 61.78 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13462000 13462000 0 13462000 13462000 0 0 0 0 + 9874 2182 10145 26139 40909 40909 1 NIGVDNPAAK DASLMVTNDGATILKNIGVDNPAAKVLVDM ATILKNIGVDNPAAKVLVDMSRVQDDEVGD K N I A K V 2 0 2 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 10 0 997.51926 F8VQ14;F5GWF6;V9HW96;P78371;B7Z4R3 F8VQ14 73 82 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 2 0.0018994 68.224 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6932900 0 6932900 6932900 0 6932900 0 0 0 9875 1255 10146 26140;26141 40910;40911 40910 2 NIHAAAHQVR RKDKNLPNVIINEKRNIHAAAHQVRVLPYP INEKRNIHAAAHQVRVLPYPFTHHWQFERT R N I V R V 3 1 1 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 1 0 0 10 0 1115.5948 Q9BVJ6;B4E343 Q9BVJ6 674 683 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2;3 0.00083629 79.148 3 1.0381 1.0868 20.282 2 Median 1.0381 1.0868 20.282 2 0 Median NaN NaN NaN 0 0 Median 15699000 5897800 9800900 15699000 5897800 9800900 0 0 0 9876 2008 10147 26142;26143;26144 40912;40913;40914 40914 3 NIHLNLDR EEDIHDKFAEYGEIKNIHLNLDRRTGYLKG AEYGEIKNIHLNLDRRTGYLKGYTLVEYET K N I D R R 0 1 2 1 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 993.53558 A0A023T787;Q9Y5S9;A0A0J9YW13 A0A023T787 101 108 RBM8;RBM8A RNA-binding protein 8A yes no 2 0.03896 58.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9877 4 10148 26145 40915 40915 1 NIHPIYNIK SGLKEVRKVVLDTMKNIHPIYNIKSLMIKR VLDTMKNIHPIYNIKSLMIKRELAKDSELR K N I I K S 0 0 2 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 1 0 0 0 9 0 1110.6186 Q13601 Q13601 212 220 KRR1 KRR1 small subunit processome component homolog yes yes 2 3.4163E-05 133.81 1 1.0773 1.2155 NaN 1 Median 1.0773 1.2155 NaN 1 0 Median NaN NaN NaN 0 0 Median 78452000 38436000 40016000 78452000 38436000 40016000 0 0 0 9878 1717 10149 26146 40916;40917 40917 2 NIHSSDWPK QKIGHYKIEDRGNLRNIHSSDWPKFFEKYL DRGNLRNIHSSDWPKFFEKYLRDVNCPFKI R N I P K F 0 0 1 1 0 0 0 0 1 1 0 1 0 0 1 2 0 1 0 0 0 0 9 0 1082.5145 Q5RLJ0;Q549M8;Q9Y224;G3V4C6;G3V4E7 Q5RLJ0 50 58 C14orf166 UPF0568 protein C14orf166 yes no 2 0.021253 49.536 1 1.0757 1.1569 NaN 1 Median 1.0757 1.1569 NaN 1 0 Median NaN NaN NaN 0 0 Median 21558000 10295000 11263000 21558000 10295000 11263000 0 0 0 9879 1793 10150 26147 40918 40918 1 NIIHGSDSVESAEK KPGTIRGDFCIQVGRNIIHGSDSVESAEKE RNIIHGSDSVESAEKEIGLWFHPEELVDYT R N I E K E 1 0 1 1 0 0 2 1 1 2 0 1 0 0 0 3 0 0 0 1 0 0 14 0 1484.7107 P15531 P15531 115 128 NME1 Nucleoside diphosphate kinase A yes yes 2 0.00061865 59.542 2 1.7092 1.7677 72.708 2 Median 1.7092 1.7677 72.708 2 0 Median NaN NaN NaN 0 0 Median 26771000 9299900 17471000 26771000 9299900 17471000 0 0 0 9880 1484 10151 26148;26149 40919;40920 40919 2 NIIHGSDSVK KPGTIRGDFCIQVGRNIIHGSDSVKSAEKE IQVGRNIIHGSDSVKSAEKEISLWFKPEEL R N I V K S 0 0 1 1 0 0 0 1 1 2 0 1 0 0 0 2 0 0 0 1 0 0 10 0 1068.5564 Q6FHN3;Q32Q12;O60361;P22392 Q6FHN3 115 124 NME2;NME1-NME2;NME2P1 Nucleoside diphosphate kinase;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase B yes no 2 0.0035385 64.064 1 1.2083 1.2616 NaN 1 Median 1.2083 1.2616 NaN 1 0 Median NaN NaN NaN 0 0 Median 12188000 4927100 7260700 12188000 4927100 7260700 0 0 0 9881 1393 10152 26150 40921 40921 1 NIILEEGK KRKKAVLFCLSEDKKNIILEEGKEILVGDV CLSEDKKNIILEEGKEILVGDVGQTVDDPY K N I G K E 0 0 1 0 0 0 2 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 914.5073 G3V1A4;V9HWI5;E9PK25;P23528;E9PP50;E9PLJ3;B4E112;E9PQB7;E9PS23 G3V1A4 29 36 CFL1;HEL-S-15 Cofilin-1 yes no 2 0.020224 65.252 2 1 10.552 11.796 NaN 1 Median 10.552 11.796 NaN 1 0 Median NaN NaN NaN 0 0 Median 136980000 7426300 129560000 134240000 7426300 126820000 2740200 0 2740200 9882 1242 10153 26151;26152;26153 40922;40923;40924 40923 3 NIILTTMPAGTK IIKGNLGANLSGLGRNIILTTMPAGTKLIA LGRNIILTTMPAGTKLIAGNKPVSFLTAQQ R N I T K L 1 0 1 0 0 0 0 1 0 2 1 1 1 0 1 0 3 0 0 0 0 0 12 0 1258.6955 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1220 1231 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.00023995 85.377 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4650800 4650800 0 4650800 4650800 0 0 0 0 9883 135 10154 26154;26155 40925;40926 40926 115 2 NIINEEDADTMR KYLCECQFDDNLKFKNIINEEDADTMRLQP KFKNIINEEDADTMRLQPIGRDKDGLMYWY K N I M R L 1 1 2 2 0 0 2 0 0 2 0 0 1 0 0 0 1 0 0 0 0 0 12 0 1419.63 Q96T23;H0YER1;Q05DG0;H7C306 Q96T23 139 150 RSF1 Remodeling and spacing factor 1 yes no 2 1.2309E-05 100.88 2 1 0.58484 0.62254 10.332 3 Plateau 0.5766 0.60798 7.3013 2 0 Median 0.59951 0.52068 NaN 1 0 Median 53547000 32841000 20706000 51259000 31358000 19901000 2288100 1482900 805240 9884 1991 10155 26156;26157;26158 40927;40928;40929;40930;40931 40928 1820 5 NIIQQAIDAGEVPSYNAFVK ESVLCVQYTEEPRIRNIIQQAIDAGEVPSY AIDAGEVPSYNAFVKESTQKMNAKKRRAQE R N I V K E 3 0 2 1 0 2 1 1 0 3 0 1 0 1 1 1 0 0 1 2 0 0 20 0 2176.1164 Q2VIL4;A0A024QZN2;Q8WXX5 Q2VIL4 153 172 hCG_2024613;DNAJC9 DnaJ homolog subfamily C member 9 yes no 2 3.0905E-05 48.14 1 2 0.62051 0.5607 22.251 2 Median 0.47503 0.47907 NaN 1 0 Median 0.81054 0.65624 NaN 1 0 Median 13345000 7204400 6140400 7747000 4354600 3392400 5597800 2849700 2748100 9885 24 10156 26159;26160;26161 40932;40933;40934;40935 40933 4 NIIRPQLK GKKAKSETFRLLHAKNIIRPQLKFREKIDN FRLLHAKNIIRPQLKFREKIDNSNTPFLPK K N I L K F 0 1 1 0 0 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 8 1 980.6131 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 179 186 EXOSC10 Exosome component 10 yes no 2 0.023281 94.006 1 0.85524 0.98094 NaN 1 Median 0.85524 0.98094 NaN 1 0 Median NaN NaN NaN 0 0 Median 26564000 14518000 12045000 26564000 14518000 12045000 0 0 0 9886 1676 10157 26162 40936 40936 1 NIITNLSK NFFKDWRKEMTNEEKNIITNLSKCDFTQMS EMTNEEKNIITNLSKCDFTQMSQYFKAQTE K N I S K C 0 0 2 0 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 8 0 901.52328 P11387;B9EG90 P11387 292 299 TOP1 DNA topoisomerase 1 yes no 1;2 1.5371E-05 147.36 2 1 1.1499 1.3374 15.488 3 Plateau 1.0767 1.1595 20.187 2 0 Median 1.5644 1.2867 NaN 1 0 Median 291490000 138920000 152580000 263330000 127990000 135330000 28168000 10921000 17247000 9887 1470 10158 26163;26164;26165 40937;40938;40939 40937 3 NIIVFYGSQTGTAEEFANR VRESSFVEKMKKTGRNIIVFYGSQTGTAEE FYGSQTGTAEEFANRLSKDAHRYGMRGMSA R N I N R L 2 1 2 0 0 1 2 2 0 2 0 0 0 2 0 1 2 0 1 1 0 0 19 0 2116.0225 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;C9JU80 B2R6E5 82 100 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.00018911 46.481 2 1 0.43095 0.36694 NaN 1 Median NaN NaN NaN 0 0 Median 0.43095 0.36694 NaN 1 0 Median 6298300 5340200 958040 3130300 3130300 0 3168000 2209900 958040 9888 719 10159 26166;26167;26168 40940;40941;40942;40943 40942 4 NILDSKPTANK GYIPGKNRDLKVVKKNILDSKPTANKKCDL VVKKNILDSKPTANKKCDLISIPKKTTDTA K N I N K K 1 0 2 1 0 0 0 0 0 1 1 2 0 0 1 1 1 0 0 0 0 0 11 1 1199.651 Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B4DMH3;B4E3S0;B7Z9V0;H0YHL7 Q53G58 408 418 CORO1C Coronin;Coronin-1C yes no 2;3 1.4263E-12 150.04 4 2 3.5586 4.2133 27.244 5 Median 3.4037 3.9928 8.5472 4 0 Median 8.2778 7.0868 NaN 1 0 Median 276080000 59023000 217060000 260480000 58083000 202400000 15601000 940170 14661000 9889 340 10160 26169;26170;26171;26172;26173;26174 40944;40945;40946;40947;40948;40949;40950;40951;40952 40947 9 NILEESLCELVAK AEVLGLILRYVMERKNILEESLCELVAKQL RKNILEESLCELVAKQLKQHQNTMEDKFIV K N I A K Q 1 0 1 0 1 0 3 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 13 0 1516.7807 P78527 P78527 2335 2347 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00032476 64.439 1 2 0.35396 0.28903 36.441 3 Median 0.47702 0.50123 NaN 1 0 Median 0.33915 0.26972 9.7828 2 0 Median 40880000 29227000 11653000 19653000 12937000 6715800 21228000 16290000 4937500 9890 1665 10161 26175;26176;26177 40953;40954;40955;40956 40955 3 NILFVITKPDVYK RQVTGVTRVTIRKSKNILFVITKPDVYKSP SKNILFVITKPDVYKSPASDTYIVFGEAKI K N I Y K S 0 0 1 1 0 0 0 0 0 2 1 2 0 1 1 0 1 0 1 2 0 0 13 1 1548.8916 F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3;F8VZ58;A8K6N6;Q9BZK3 F8W1N5 22 34 NACA;hCG_2016482;NACAP1 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Putative nascent polypeptide-associated complex subunit alpha-like protein yes no 2 6.2436E-08 113.47 2 2.0791 2.4337 5.3458 2 Median 2.0791 2.4337 5.3458 2 0 Median NaN NaN NaN 0 0 Median 62251000 20263000 41987000 62251000 20263000 41987000 0 0 0 9891 324 10162 26178;26179 40957;40958;40959;40960;40961 40960 5 NILLTIGSYK YLKAMLSTGFKIPKKNILLTIGSYKNKSEL KIPKKNILLTIGSYKNKSELLPTVRLLESL K N I Y K N 0 0 1 0 0 0 0 1 0 2 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1120.6492 Q53SY7;F8VPD4;P27708 Q53SY7 1240 1249 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0083024 56.258 3 0.80623 0.82054 2.3816 2 Median 0.80623 0.82054 2.3816 2 0 Median NaN NaN NaN 0 0 Median 26625000 13451000 13175000 26625000 13451000 13175000 0 0 0 9892 1259 10163 26180;26181;26182 40962;40963;40964 40964 3 NILMFTGETEATK KKLLEQRAQYVEKTKNILMFTGETEATKEK TKNILMFTGETEATKEKKRGGGGGRRSKKG K N I T K E 1 0 1 0 0 0 2 1 0 1 1 1 1 1 0 0 3 0 0 0 0 0 13 0 1453.7123 A8K6X9;Q6PD62 A8K6X9 887 899 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 4.5654E-05 93.058 5 1.9044 1.8977 6.0643 2 Median 1.9044 1.8977 6.0643 2 0 Median NaN NaN NaN 0 0 Median 87421000 18560000 68861000 87421000 18560000 68861000 0 0 0 9893 765 10164 26183;26184;26185;26186;26187 40965;40966;40967;40968;40969;40970 40969 594 6 NILNKPEVNQK LEETLSTLEYAHRAKNILNKPEVNQKLTKK HRAKNILNKPEVNQKLTKKALIKEYTEEIE K N I Q K L 0 0 3 0 0 1 1 0 0 1 1 2 0 0 1 0 0 0 0 1 0 0 11 1 1295.7197 P52732;B2RAM6 P52732 358 368 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 2.6686E-07 117.53 2 2.0269 2.318 NaN 1 Median 2.0269 2.318 NaN 1 0 Median NaN NaN NaN 0 0 Median 26421000 5427300 20994000 26421000 5427300 20994000 0 0 0 9894 1602 10165 26188;26189 40971;40972 40972 2 NILSVVGTDALK TLFGEGPAERRERLRNILSVVGTDALKKTK RLRNILSVVGTDALKKTKKDDEKSKKSKEE R N I L K K 1 0 1 1 0 0 0 1 0 1 2 1 0 0 0 1 1 0 0 2 0 0 12 0 1228.7027 Q6IAP9;Q5T1M7;Q59EL4;O43172;B2R7V4 Q6IAP9 134 145 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 2 0.0017796 74.162 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4765600 4765600 0 4765600 4765600 0 0 0 0 9895 1381 10166 26190;26191 40973;40974 40973 2 NINAYVVFK KKLAAIKRKIHPDQKNINAYVVFKEESAAT IHPDQKNINAYVVFKEESAATQALKRNGAQ K N I F K E 1 0 2 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 2 0 0 9 0 1066.5811 P42696;A2A2V2 P42696 243 251 RBM34 RNA-binding protein 34 yes no 2 0.0011494 89.296 1 2 0.96656 1.064 19.501 3 Plateau 0.96656 1.0644 NaN 1 0 Median 0.94498 0.76065 2.7856 2 0 Median 61945000 30172000 31773000 43036000 20302000 22734000 18909000 9869600 9039300 9896 1566 10167 26192;26193;26194 40975;40976;40977;40978 40975 4 NINNAFGPGTANER LFEFKMGRKAAETTRNINNAFGPGTANERT RNINNAFGPGTANERTVQWWFKKFCKGDES R N I E R T 2 1 4 0 0 0 1 2 0 1 0 0 0 1 1 0 1 0 0 0 0 0 14 0 1473.6961 B9ZVV8;B4DND2;Q96H41;Q53H47 B9ZVV8 135 148 SETMAR Histone-lysine N-methyltransferase SETMAR;Histone-lysine N-methyltransferase;Transposon Hsmar1 transposase yes no 2 0.00021563 83.397 1 0.73493 0.72077 NaN 1 Median 0.73493 0.72077 NaN 1 0 Median NaN NaN NaN 0 0 Median 13919000 6427600 7491400 13919000 6427600 7491400 0 0 0 9897 1011 10168 26195 40979 40979 1 NINTFVETPVQK GKAMDTPKPAVSDEKNINTFVETPVQKLDL DEKNINTFVETPVQKLDLLGNLPGSKRQPQ K N I Q K L 0 0 2 0 0 1 1 0 0 1 0 1 0 1 1 0 2 0 0 2 0 0 12 0 1388.73 P46013 P46013 2399 2410 MKI67 Antigen KI-67 yes yes 2 1.2308E-37 178.84 2 2 2.5171 2.517 21.033 4 Median 1.8215 2.0993 4.117 2 0 Median 3.5118 3.0092 3.7062 2 0 Median 602520000 185610000 416910000 414060000 144910000 269140000 188460000 40700000 147760000 9898 1569 10169 26196;26197;26198;26199 40980;40981;40982;40983;40984;40985;40986;40987;40988;40989;40990;40991;40992;40993;40994;40995 40984 16 NIPAFLPNVLSLK RHSVASLESIVNEAKNIPAFLPNVLSLKEA AKNIPAFLPNVLSLKEALQKAREWTAKVEA K N I L K E 1 0 2 0 0 0 0 0 0 1 3 1 0 1 2 1 0 0 0 1 0 0 13 0 1424.8391 E7EV89;B4DVX3;B4DVM9;P29375 E7EV89 602 614 KDM5A Lysine-specific demethylase 5A yes no 2 0.011999 39.917 1 0.48829 0.52732 NaN 1 Median 0.48829 0.52732 NaN 1 0 Median NaN NaN NaN 0 0 Median 3642900 2163700 1479200 3642900 2163700 1479200 0 0 0 9899 1040 10170 26200 40996;40997 40997 2 NIPGITLLNVSK CIIYNEDNGIIKAFRNIPGITLLNVSKLNI AFRNIPGITLLNVSKLNILKLAPGGHVGRF R N I S K L 0 0 2 0 0 0 0 1 0 2 2 1 0 0 1 1 1 0 0 1 0 0 12 0 1267.75 P36578;Q59GY2;B4DMJ6;H3BM89;Q53G74;B4DMJ2 P36578 223 234 RPL4 60S ribosomal protein L4 yes no 2 0.00012005 94.616 4 2 0.99798 1.0552 10.23 5 Median 0.9114 1.0774 1.6723 3 0 Median 1.0213 0.89671 4.5911 2 0 Median 3275300000 1700400000 1575000000 2610400000 1369600000 1240800000 664890000 330710000 334170000 9900 1548 10171 26201;26202;26203;26204;26205;26206 40998;40999;41000;41001;41002;41003;41004;41005;41006;41007;41008;41009;41010;41011;41012;41013;41014;41015;41016 40999 19 NIPGPHMVLVPK TLQTISLLGYMKHYRNIPGPHMVLVPKSTL HYRNIPGPHMVLVPKSTLHNWMSEFKRWVP R N I P K S 0 0 1 0 0 0 0 1 1 1 1 1 1 0 3 0 0 0 0 2 0 0 12 0 1300.7326 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;D7EZH4 O60264 227 238 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.0026616 50.805 1 3.7093 4.0307 NaN 1 Median 3.7093 4.0307 NaN 1 0 Median NaN NaN NaN 0 0 Median 47059000 10586000 36473000 47059000 10586000 36473000 0 0 0 9901 1391 10172 26207 41017 41017 1067 1 NIPPYFVALVPQEEELDDQK LEKEVAALCRYTPRRNIPPYFVALVPQEEE FVALVPQEEELDDQKIQVTPPGFQLVFLPF R N I Q K I 1 0 1 2 0 2 3 0 0 1 2 1 0 1 3 0 0 0 1 2 0 0 20 0 2343.1634 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 405 424 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 2.6387E-23 128.95 2 2 0.32803 0.3264 34.095 4 Median 0.37919 0.43655 1.9997 2 0 Median 0.28119 0.24214 3.1084 2 0 Median 642340000 474120000 168220000 400160000 288170000 111990000 242180000 185950000 56226000 9902 82 10173 26208;26209;26210;26211 41018;41019;41020;41021;41022;41023;41024;41025 41022 8 NIQGTITGDILPR SFLPQNKEEIERTIKNIQGTITGDILPRLH IKNIQGTITGDILPRLHKCLASTTKREEEH K N I P R L 0 1 1 1 0 1 0 2 0 3 1 0 0 0 1 0 2 0 0 0 0 0 13 0 1396.7674 O75691 O75691 1778 1790 UTP20 Small subunit processome component 20 homolog yes yes 2 1.9071E-23 152.62 2 2 1.4376 1.3689 6.3898 4 Median 1.2835 1.3874 8.2667 2 0 Median 1.6753 1.3617 7.1176 2 0 Median 108200000 47434000 60763000 82895000 37443000 45452000 25302000 9991100 15311000 9903 1412 10174 26212;26213;26214;26215 41026;41027;41028;41029 41027 4 NIQQLIELVR CLLENIRNGLSNQNKNIQQLIELVRRL___ SNQNKNIQQLIELVRRL_____________ K N I V R R 0 1 1 0 0 2 1 0 0 2 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1224.719 B7Z7T1;B2RAT5;A0A024RA74;Q8TCY9 B7Z7T1 877 886 URG4;URGCP Up-regulator of cell proliferation yes no 2 0.0018994 68.224 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1547900 0 1547900 1547900 0 1547900 0 0 0 9904 298 10175 26216;26217 41030;41031 41031 2 NIQVSHQEFSK TKVQESLKKQEGLLKNIQVSHQEFSKMKQS GLLKNIQVSHQEFSKMKQSNNEANLREEVL K N I S K M 0 0 1 0 0 2 1 0 1 1 0 1 0 1 0 2 0 0 0 1 0 0 11 0 1315.6521 B7Z5C1;B4DHD2;Q4W4Y1;Q8WUM4 B7Z5C1 409 419 DRIP4;PDCD6IP Programmed cell death 6-interacting protein yes no 2 8.4595E-06 109.42 2 4.9619 5.2417 NaN 1 Median 4.9619 5.2417 NaN 1 0 Median NaN NaN NaN 0 0 Median 9511600 531090 8980600 9511600 531090 8980600 0 0 0 9905 974 10176 26218;26219 41032;41033 41032 2 NISHDTFGTTYGR LSMKMPKALKPKKKKNISHDTFGTTYGRIH KKNISHDTFGTTYGRIHMQKQDLSKLQTRK K N I G R I 0 1 1 1 0 0 0 2 1 1 0 0 0 1 0 1 3 0 1 0 0 0 13 0 1467.6743 A8K800;Q9H7B2 A8K800 253 265 RPF2 Ribosome production factor 2 homolog yes no 2;3 8.0871E-14 147.58 4 4 0.97743 0.93836 7.5737 8 Median 0.87686 0.99955 3.7978 4 0 Median 1.0555 0.89468 4.2572 4 0 Median 464880000 246070000 218810000 415180000 222050000 193130000 49699000 24017000 25682000 9906 773 10177 26220;26221;26222;26223;26224;26225;26226;26227 41034;41035;41036;41037;41038;41039;41040;41041;41042;41043;41044;41045;41046;41047;41048;41049 41040 16 NISMSVEGDYTYLR PVFGIATPFHIATIKNISMSVEGDYTYLRI KNISMSVEGDYTYLRINFYCPGSALGRNEG K N I L R I 0 1 1 1 0 0 1 1 0 1 1 0 1 0 0 2 1 0 2 1 0 0 14 0 1646.761 Q9Y5B9 Q9Y5B9 556 569 SUPT16H FACT complex subunit SPT16 yes yes 2 6.2172E-38 167.84 4 4 0.89122 0.73219 42.575 7 Median 1.1785 1.3462 43.331 3 0 Plateau 0.72077 0.60826 25.897 4 0 Median 333320000 170740000 162590000 269030000 133170000 135860000 64293000 37567000 26726000 9907 2148 10178;10179 26228;26229;26230;26231;26232;26233;26234;26235 41050;41051;41052;41053;41054;41055;41056;41057;41058;41059;41060;41061;41062;41063;41064 41053 1997 15 NISQELNMEQK DSSSSKEDENEAERKNISQELNMEQKNPKK AERKNISQELNMEQKNPKK___________ K N I Q K N 0 0 2 0 0 2 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 11 0 1332.6344 A0A0U1RRH6 A0A0U1RRH6 934 944 yes yes 2 3.8563E-08 112.71 1 0.84078 0.89134 NaN 1 Median 0.84078 0.89134 NaN 1 0 Median NaN NaN NaN 0 0 Median 23476000 11685000 11791000 23476000 11685000 11791000 0 0 0 9908 590 10180 26236 41065 41065 445 1 NISVASCNSSQVVVAVGR EPKALVSEWKEPQAKNISVASCNSSQVVVA VASCNSSQVVVAVGRALYYLQIHPQELRQI K N I G R A 2 1 2 0 1 1 0 1 0 1 0 0 0 0 0 4 0 0 0 5 0 0 18 0 1845.9367 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 497 514 DDB1 DNA damage-binding protein 1 yes no 2 4.7962E-09 99.941 2 2 0.60339 0.62171 NaN 1 Median 0.60339 0.62171 NaN 1 0 Median NaN NaN NaN 0 0 Median 31164000 12174000 18990000 16175000 12174000 4000900 14989000 0 14989000 9909 1770 10181 26237;26238;26239;26240 41066;41067;41068;41069;41070;41071 41069 6 NITLDDASAPR AVAAPRPDRLVNRLKNITLDDASAPRLMVL NRLKNITLDDASAPRLMVLRQPRGPDNSMG K N I P R L 2 1 1 2 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 11 0 1171.5833 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;E9PLT0;Q9UG93;Q8WU01 Q9GZV0 728 738 CSDE1;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 1.5376E-05 103.7 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56193000 0 56193000 52590000 0 52590000 3602900 0 3602900 9910 42 10182 26241;26242;26243;26244 41072;41073;41074;41075;41076 41072 5 NITRPFEDQTSLEFFSK VYALKKPYGVLYKKKNITRPFEDQTSLEFF TRPFEDQTSLEFFSKKSDCSLFMFGSHNKK K N I S K K 0 1 1 1 0 1 2 0 0 1 1 1 0 3 1 2 2 0 0 0 0 0 17 1 2058.0058 A8K800;Q9H7B2;Q5VXN0 A8K800 67 83 RPF2 Ribosome production factor 2 homolog yes no 3 7.5044E-14 100.77 2 1 0.9172 1.0894 0.93453 3 Plateau 0.9088 1.0878 0.20658 2 0 Median 1.196 1.0705 NaN 1 0 Median 562520000 299930000 262590000 480750000 263620000 217120000 81776000 36312000 45464000 9911 773 10183 26245;26246;26247 41077;41078;41079;41080;41081;41082;41083 41082 7 NIVAVGAGFCDGLR VVDDADTVELCGALKNIVAVGAGFCDGLRC KNIVAVGAGFCDGLRCGDNTKAAVIRLGLM K N I L R C 2 1 1 1 1 0 0 3 0 1 1 0 0 1 0 0 0 0 0 2 0 0 14 0 1447.7242 Q8N335;C9JM46 Q8N335 207 220 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein;Glycerol-3-phosphate dehydrogenase [NAD(+)] yes no 2 0.0042407 56.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9912 1906 10184 26248 41084 41084 1 NIVEAAAVR RCVPKDKAIKKFVIRNIVEAAAVRDISEAS KKFVIRNIVEAAAVRDISEASVFDAYVLPK R N I V R D 3 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 9 0 941.52943 A0A024RB14;P62854;Q5JNZ5;Q75MH1;Q76N57 A0A024RB14 43 51 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 2 7.3905E-06 130.04 3 3 0.94885 0.96501 18.722 4 Median 0.69299 0.82214 0.58057 2 0 Median 1.304 1.1368 1.0873 2 0 Median 3416000000 1944800000 1471200000 2875000000 1702100000 1172900000 541020000 242670000 298360000 9913 319 10185 26249;26250;26251;26252;26253;26254 41085;41086;41087;41088;41089;41090;41091;41092;41093;41094;41095;41096;41097;41098;41099;41100;41101;41102 41087 18 NIVLYDMR NPIETFLLGSCASDRNIVLYDMRQATPLKK GSCASDRNIVLYDMRQATPLKKVILDMRTN R N I M R Q 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 8 0 1022.5219 A0A087WT20;Q9NV06;A0A087X1F8 A0A087WT20 372 379 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.017114 49.097 1 1.3435 1.3995 NaN 1 Median 1.3435 1.3995 NaN 1 0 Median NaN NaN NaN 0 0 Median 21216000 7425400 13791000 21216000 7425400 13791000 0 0 0 9914 402 10186 26255 41103 41103 292 1 NIVQHTTDSSLEEK KDSKEFTQKNKKEKKNIVQHTTDSSLEEKQ KNIVQHTTDSSLEEKQRTLDSGTSEIVKSP K N I E K Q 0 0 1 1 0 1 2 0 1 1 1 1 0 0 0 2 2 0 0 1 0 0 14 0 1599.774 Q9H501;A0JLU5;Q05C10;Q8IWH6 Q9H501 171 184 ESF1 ESF1 homolog yes no 2;3 8.6722E-85 225.97 3 4 1.3568 1.0619 17.903 7 Median 0.91523 0.94169 12.427 3 0 Plateau 1.4337 1.1357 7.4224 4 0 Median 79617000 42020000 37597000 63622000 35448000 28174000 15995000 6571400 9423300 9915 2033 10187 26256;26257;26258;26259;26260;26261;26262 41104;41105;41106;41107;41108;41109;41110;41111;41112;41113;41114;41115;41116 41108 13 NIVSCDSNIGADK KENETCLADQETGSKNIVSCDSNIGADKVE SKNIVSCDSNIGADKVEKKKQIQHVCQEME K N I D K V 1 0 2 2 1 0 0 1 0 2 0 1 0 0 0 2 0 0 0 1 0 0 13 0 1391.6351 A8K124;B4DHL1;A0A024R5W1;Q6N043 A8K124 810 822 SUHW4;ZNF280D Zinc finger protein 280D yes no 2 0.0456 30.205 1 2.3002 1.9355 NaN 1 Median NaN NaN NaN 0 0 Median 2.3002 1.9355 NaN 1 0 Median 1206800 307150 899640 0 0 0 1206800 307150 899640 9916 189 10188 26263 41117 41117 1 NIVSGLMEK N I E K 0 0 1 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 0 1 0 0 9 0 989.52157 REV__C9J2X2 yes no 2 0.043492 40.268 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 9917 2171 10189 26264 41118 41118 2012 1 NIVVDDITEQKPEPQDDGK EFREGIEEEDQEEDKNIVVDDITEQKPEPQ DDITEQKPEPQDDGKSTESDVKADGDSKGS K N I G K S 0 0 1 4 0 2 2 1 0 2 0 2 0 0 2 0 1 0 0 2 0 0 19 1 2139.0332 Q9Y4W2;B3KUJ7 Q9Y4W2 216 234 LAS1L Ribosomal biogenesis protein LAS1L yes no 3 0.038157 23.683 1 1.3774 1.5829 NaN 1 Median 1.3774 1.5829 NaN 1 0 Median NaN NaN NaN 0 0 Median 23680000 9955200 13725000 23680000 9955200 13725000 0 0 0 9918 2146 10190 26265 41119 41119 0 NIYAFMGTPVQK GKAMHTPKPAVSGEKNIYAFMGTPVQKLDL GEKNIYAFMGTPVQKLDLTENLTGSKRRLQ K N I Q K L 1 0 1 0 0 1 0 1 0 1 0 1 1 1 1 0 1 0 1 1 0 0 12 0 1367.6908 P46013 P46013 1550 1561 MKI67 Antigen KI-67 yes yes 2 6.9397E-05 93.258 2 4 3.4178 3.6783 19.092 6 Median 3.2706 3.6783 3.4495 2 0 Median 4.1156 3.3002 23.605 4 0 Median 232870000 52815000 180050000 189520000 44012000 145510000 43351000 8802900 34548000 9919 1569 10191;10192 26266;26267;26268;26269;26270;26271 41120;41121;41122;41123;41124;41125;41126;41127 41121 1337 8 NIYSEELR ENRLQTMKEELDFQKNIYSEELRETKRRHE EELDFQKNIYSEELRETKRRHETRLVEIDN K N I L R E 0 1 1 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 8 0 1022.5033 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 209 216 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.0010071 117.16 2 2 1.3347 1.2268 9.083 4 Median 1.1619 1.337 9.9249 2 0 Median 1.4543 1.1864 2.5036 2 0 Median 350470000 154130000 196340000 327990000 144860000 183130000 22479000 9265200 13214000 9920 1440 10193 26272;26273;26274;26275 41128;41129;41130;41131 41128 4 NIYVLQELDNPGAK VFYGTEKDKNSVNFKNIYVLQELDNPGAKR KNIYVLQELDNPGAKRILELDQFKGQQGQK K N I A K R 1 0 2 1 0 1 1 1 0 1 2 1 0 0 1 0 0 0 1 1 0 0 14 0 1572.8148 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9 A0A024R1N4 101 114 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 2.5676E-30 161.62 3 2 0.35544 0.35726 34.496 4 Median 0.41344 0.48223 2.168 2 0 Median 0.30986 0.26549 1.7335 2 0 Median 739230000 535870000 203360000 555690000 396680000 159010000 183540000 139190000 44354000 9921 82 10194 26276;26277;26278;26279;26280 41132;41133;41134;41135;41136;41137;41138;41139;41140;41141;41142;41143;41144;41145 41144 14 NKFDVDAADEK NVRLWEAGWKQRYYKNKFDVDAADEKFRRK RYYKNKFDVDAADEKFRRKVVQSYVEGLCW K N K E K F 2 0 1 3 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 1 0 0 11 1 1250.5779 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 447 457 XRN2 5-3 exoribonuclease 2 yes no 2 0.00013323 103.08 1 1.869 2.1358 NaN 1 Median 1.869 2.1358 NaN 1 0 Median NaN NaN NaN 0 0 Median 15172000 5366100 9806400 15172000 5366100 9806400 0 0 0 9922 903 10195 26281 41146;41147 41146 2 NKLEDELK SPPALRSRQKNTSNKNKLEDELKDDAQSVE QKNTSNKNKLEDELKDDAQSVETLGKPKAK K N K L K D 0 0 1 1 0 0 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 8 1 987.52368 Q8WYP5;B3KRD0 Q8WYP5 2169 2176 AHCTF1 Protein ELYS yes no 2 0.00010529 142.04 2 2 1.5614 1.5613 13.37 4 Median 1.1615 1.3579 14.199 2 0 Median 1.919 1.6303 0.56547 2 0 Median 160390000 66584000 93804000 120300000 53165000 67136000 40086000 13419000 26667000 9923 1945 10196 26282;26283;26284;26285 41148;41149;41150;41151;41152 41149 5 NKPGPNIESGNEDDDASFK DEFLQSRKGQKKNQKNKPGPNIESGNEDDD PNIESGNEDDDASFKIKTVAQKKAEKKERE K N K F K I 1 0 3 3 0 0 2 2 0 1 0 2 0 1 2 2 0 0 0 0 0 0 19 1 2032.8974 Q8N5A0;A0A087WUT6;O60841;A0JLR8;Q05CQ1 Q8N5A0 206 224 EIF5B Eukaryotic translation initiation factor 5B yes no 3 0.010837 36.111 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5579000 5579000 0 4592700 4592700 0 986280 986280 0 9924 414 10197 26286;26287 41153;41154 41153 2 NKPGPYSSVPPPSAPPPK DSSSDEEEEQKKPMKNKPGPYSSVPPPSAP GPYSSVPPPSAPPPKKSLGTQPPKKAVEKQ K N K P K K 1 0 1 0 0 0 0 1 0 0 0 2 0 0 8 3 0 0 1 1 0 0 18 1 1815.9519 B2RAU8;A0A0A0MRM9;Q14978;Q96J17;S4R349 B2RAU8 284 301 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 2.9196E-05 48.288 2 2 0.96104 0.95361 24.328 4 Median 1.0222 1.197 6.6328 2 0 Median 0.92282 0.78965 1.1709 2 0 Median 76282000 35060000 41221000 64276000 29288000 34988000 12005000 5771800 6233400 9925 468 10198 26288;26289;26290;26291 41155;41156;41157;41158;41159;41160;41161;41162;41163;41164 41160 10 NKPGPYSSVPPPSAPPPKK DSSSDEEEEQKKPMKNKPGPYSSVPPPSAP PYSSVPPPSAPPPKKSLGTQPPKKAVEKQQ K N K K K S 1 0 1 0 0 0 0 1 0 0 0 3 0 0 8 3 0 0 1 1 0 0 19 2 1944.0469 B2RAU8;A0A0A0MRM9;Q14978;Q96J17;S4R349 B2RAU8 284 302 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 0.059709 20.251 1 0.96598 0.9047 NaN 1 Median NaN NaN NaN 0 0 Median 0.96598 0.9047 NaN 1 0 Median 3368400 1837100 1531300 0 0 0 3368400 1837100 1531300 9926 468 10199 26292 41165 41165 1 NKPIVNIDPQTAELNHLK TLNTLRYADRARKIKNKPIVNIDPQTAELN IVNIDPQTAELNHLKQQVQQLQVLLLQAHG K N K L K Q 1 0 3 1 0 1 1 0 1 2 2 2 0 0 2 0 1 0 0 1 0 0 18 1 2043.1113 Q59HG1;O95239;Q6PKB2 Q59HG1 341 358 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 3 1.4599E-30 146.86 2 2 1.1865 1.1814 17.84 4 Median 0.8596 1.0067 1.7865 2 0 Median 1.6115 1.3705 0.16378 2 0 Median 391050000 183250000 207790000 215730000 114140000 101590000 175310000 69114000 106200000 9927 1803 10200 26293;26294;26295;26296 41166;41167;41168;41169;41170;41171;41172;41173;41174 41168 9 NKPNMSDPEESRGNDELVK RESTGNMVTGQTVCKNKPNMSDPEESRGND MSDPEESRGNDELVKQEMLVQYLQDAYSFS K N K V K Q 0 1 3 2 0 0 3 1 0 0 1 2 1 0 2 2 0 0 0 1 0 0 19 2 2157.9961 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 598 616 NCAPD2 Condensin complex subunit 1 yes no 3 7.0692E-09 94.281 2 1.0148 1.2591 5.7168 2 Median 1.0148 1.2591 5.7168 2 0 Median NaN NaN NaN 0 0 Median 228300000 111150000 117150000 228300000 111150000 117150000 0 0 0 9928 908 10201 26297;26298 41175;41176;41177 41175 745 3 NKPQVPVPGSDISETQVER FTIQEYFAKRMAALKNKPQVPVPGSDISET VPVPGSDISETQVERKRGKKRNKEATGKDV K N K E R K 0 1 1 1 0 2 2 1 0 1 0 1 0 0 3 2 1 0 0 3 0 0 19 1 2079.0596 Q96BK5 Q96BK5 191 209 PINX1 PIN2/TERF1-interacting telomerase inhibitor 1 yes yes 3 4.244E-06 57.366 2 1 0.68518 0.67286 8.2676 2 Median 0.62868 0.71337 NaN 1 0 Median 0.74677 0.63465 NaN 1 0 Median 29604000 20354000 9249800 26374000 18423000 7951100 3230000 1931300 1298700 9929 1960 10202 26299;26300;26301 41178;41179;41180 41178 3 NKYEDEINK DSELKNMQDMVEDYRNKYEDEINKRTNAEN MVEDYRNKYEDEINKRTNAENEFVTIKKDV R N K N K R 0 0 2 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 9 1 1151.5459 CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8W1U3;F8VP67;CON__Q9H552;CON__H-INV:HIT000016045;B2R853;B4DRR0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;CON__Q5XKE5;Q5XKE5;CON__P13647;P13647;B4E1T1;B4DL32;F8W0C6;H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 268 276 KRT8;KRT6C;KRT6A;KRT79;KRT5;KRT1 Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 1 no no 2 1.7624E-52 196.32 1 2 0.35984 0.30517 5.0794 2 Median NaN NaN NaN 0 0 Median 0.35984 0.30517 5.0794 2 0 Median 104480000 77989000 26487000 0 0 0 104480000 77989000 26487000 + 9930 1308;1309;1156;1162;859;1154;1175 10203 26302;26303;26304 41181;41182;41183;41184;41185 41181 5 NLAEIGK SLEDIKKRMKEKRNKNLAEIGKRRSFIAAP RMKEKRNKNLAEIGKRRSFIAAPCQIITNT K N L G K R 1 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 743.41775 B5BUA4;Q5FBB7;A0A024R2J4;F8WB17;E9RFS7 B5BUA4 29 35 SGOL1 Shugoshin-like 1 yes no 2 0.048672 58.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6197000 6197000 0 6197000 6197000 0 0 0 0 9931 1075 10204 26305 41186 41186 1 NLAHPVIQNFSYETFQQK TQKLRNDLLNIIREKNLAHPVIQNFSYETF HPVIQNFSYETFQQKMLRFLESHLDDAEPY K N L Q K M 1 0 2 0 0 3 1 0 1 1 1 1 0 2 1 1 1 0 1 1 0 0 18 0 2163.0749 Q15554;H3BR06;U3KQ35;H3BTA7;J3KSJ9 Q15554 245 262 TERF2 Telomeric repeat-binding factor 2 yes no 3 0.0014527 33.836 2 1.713 1.3717 13.529 2 Median NaN NaN NaN 0 0 Median 1.713 1.3717 13.529 2 0 Median 5967600 2160400 3807200 0 0 0 5967600 2160400 3807200 9932 1762 10205 26306;26307 41187;41188 41188 2 NLALCPANHAPLQEAAVIPR PNQWPLVKATIGLIRNLALCPANHAPLQEA PANHAPLQEAAVIPRLVQLLVKAHQDAQRH R N L P R L 5 1 2 0 1 1 1 0 1 1 3 0 0 0 3 0 0 0 0 1 0 0 20 0 2154.1368 A0A0S2Z487;A0A024R1X8;P14923;A0A0S2Z495 A0A0S2Z487 507 526 JUP Junction plakoglobin yes no 3 0.0046126 28.333 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8078600 8078600 0 6735400 6735400 0 1343200 1343200 0 9933 94 10206 26308;26309 41189;41190;41191 41189 3 NLAMGVNLTSMSK LTLRSEGFDTYRCDRNLAMGVNLTSMSKIL DRNLAMGVNLTSMSKILKCAGNEDIITLRA R N L S K I 1 0 2 0 0 0 0 1 0 0 2 1 2 0 0 2 1 0 0 1 0 0 13 0 1364.6792 Q6FI35;Q6FHF5;P12004;B4DUA2 Q6FI35 65 77 PCNA Proliferating cell nuclear antigen yes no 2 0.012349 40.496 1 1.5075 1.5475 NaN 1 Median 1.5075 1.5475 NaN 1 0 Median NaN NaN NaN 0 0 Median 14454000 4064300 10390000 14454000 4064300 10390000 0 0 0 9934 1473 10207 26310 41192 41192 1216;1217 0 NLANTVTEEILEK PDPEVMAKVKVLFVRNLANTVTEEILEKAF VRNLANTVTEEILEKAFSQFGKLERVKKLK R N L E K A 1 0 2 0 0 0 3 0 0 1 2 1 0 0 0 0 2 0 0 1 0 0 13 0 1472.7722 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645;B7Z213 Q05CK9 380 392 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 8.4805E-07 111.63 2 1 2.3749 2.5718 60.301 3 Plateau 2.3433 2.4159 8.8411 2 0 Median 1.0826 0.85493 NaN 1 0 Median 67032000 22121000 44911000 61758000 19244000 42515000 5273400 2877000 2396400 9935 864 10208 26311;26312;26313 41193;41194;41195;41196;41197;41198;41199 41196 7 NLATTVTEEILEK PDPEVMAKVKVLFVRNLATTVTEEILEKSF VRNLATTVTEEILEKSFSEFGKLERVKKLK R N L E K S 1 0 1 0 0 0 3 0 0 1 2 1 0 0 0 0 3 0 0 1 0 0 13 0 1459.777 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5;B4DT28;B4DMD1 B2R7W4 347 359 HNRNPR;HNRPR;DKFZp686A13234 Heterogeneous nuclear ribonucleoprotein R yes no 2 0.0019262 67.08 2 0.75456 0.60867 14.999 2 Median NaN NaN NaN 0 0 Median 0.75456 0.60867 14.999 2 0 Median 21424000 12124000 9300200 0 0 0 21424000 12124000 9300200 9936 855 10209 26314;26315 41200;41201;41202 41200 3 NLAVLCLGCCGLQNQDFAR SLILPGIISIHPVVRNLAVLCLGCCGLQNQ LCLGCCGLQNQDFARKHFVLLLQVLQIDDV R N L A R K 2 1 2 1 3 2 0 2 0 0 4 0 0 1 0 0 0 0 0 1 0 0 19 0 2208.0238 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 602 620 NCAPG Condensin complex subunit 3 no no 2 3.8601E-08 121.24 2 2 1.5341 0.91619 32.905 4 Linear 0.66574 0.66932 11.807 2 0 Median 1.3764 1.1686 1.8141 2 0 Median 76377000 34746000 41630000 29298000 15664000 13634000 47079000 19083000 27996000 9937 1995;1289 10210 26316;26317;26318;26319 41203;41204;41205;41206;41207;41208;41209;41210 41207 8 NLDCPELISEFMK WKGFSEEHNTWEPEKNLDCPELISEFMKKY EKNLDCPELISEFMKKYKKMKEGENNKPRE K N L M K K 0 0 1 1 1 0 2 0 0 1 2 1 1 1 1 1 0 0 0 0 0 0 13 0 1594.7371 V9HWG0;P45973;Q6I9T7;F8VNY3 V9HWG0 56 68 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 9.1971E-14 129.84 4 2 1.1128 1.0184 33.046 4 Median 1.1846 1.2046 6.6662 2 0 Median 0.90165 0.73714 28.638 2 0 Median 82194000 29582000 52612000 70898000 23760000 47139000 11296000 5822300 5473500 9938 1568 10211 26320;26321;26322;26323;26324;26325 41211;41212;41213;41214;41215;41216;41217;41218;41219 41216 1326 9 NLDDGIDDER QDRITRYQGVNLYVKNLDDGIDDERLRKEF NLYVKNLDDGIDDERLRKEFSPFGTITSAK K N L E R L 0 1 1 4 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1160.4946 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;A0A024R9E2;H0YAR2;Q5VX58;Q3ZCS4;Q9H361;Q2VIP3;H0YAP2 A0A087WTT1 275 284 PABPC1;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.0010088 77.662 2 1.6998 1.7343 4.8423 2 Median 1.6998 1.7343 4.8423 2 0 Median NaN NaN NaN 0 0 Median 39586000 14987000 24599000 39586000 14987000 24599000 0 0 0 9939 273 10212 26326;26327 41220;41221;41222 41220 3 NLDDTIDDEK QERISRYQGVNLYIKNLDDTIDDEKLRKEF NLYIKNLDDTIDDEKLRKEFSPFGSITSAK K N L E K L 0 0 1 4 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1176.5146 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;Q53GL4;H0YEU6;Q147Y3;Q3B867;P0CB38 B1ANR0 300 309 PABPC4;PABPC4L Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like yes no 2 0.0088882 55.461 1 2.5515 2.7572 NaN 1 Median 2.5515 2.7572 NaN 1 0 Median NaN NaN NaN 0 0 Median 35285000 9749700 25535000 35285000 9749700 25535000 0 0 0 9940 818 10213 26328 41223 41223 1 NLDENGLDLLSK TFPKWKPGSLASHVKNLDENGLDLLSKMLI HVKNLDENGLDLLSKMLIYDPAKRISGKMA K N L S K M 0 0 2 2 0 0 1 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 12 0 1329.6776 A0A024QZP7;P06493;Q5H9N4;A0A024QZJ8 A0A024QZP7 255 266 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 0.00020446 85.963 2 2 1.5469 1.3568 25.656 4 Linear 1.5311 1.7184 5.6355 2 0 Median 1.3885 1.106 1.1251 2 0 Median 248280000 97117000 151160000 215200000 82068000 133130000 33081000 15050000 18031000 9941 25 10214 26329;26330;26331;26332 41224;41225;41226;41227 41227 4 NLDFQDVLDK CHGAGRALSRAKSRRNLDFQDVLDKLADMG AKSRRNLDFQDVLDKLADMGIAIRVASPKL R N L D K L 0 0 1 3 0 1 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1205.5928 Q9Y3I0;B4DNA0 Q9Y3I0 442 451 RTCB tRNA-splicing ligase RtcB homolog yes no 2 4.5895E-06 109.29 1 1.2919 1.4547 NaN 1 Median 1.2919 1.4547 NaN 1 0 Median NaN NaN NaN 0 0 Median 73681000 32375000 41306000 73681000 32375000 41306000 0 0 0 9942 2137 10215 26333 41228 41228 1 NLDIERPTYTNLNR AFMVDNEAIYDICRRNLDIERPTYTNLNRL RNLDIERPTYTNLNRLISQIVSSITASLRF R N L N R L 0 2 3 1 0 0 1 0 0 1 2 0 0 0 1 0 2 0 1 0 0 0 14 1 1717.8747 B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;F8VVB9;C9JDS9;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2;F8VQQ4 B3KT06 181 194 TUBA1B;TUBA4A;TUBA1C;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2;3 5.4544E-05 91.937 4 2 1.4325 1.5897 28.496 6 Median 1.4486 1.6477 5.995 4 0 Median 1.1206 0.97544 10.75 2 0 Median 2578800000 1032000000 1546800000 2483200000 987180000 1496000000 95675000 44833000 50843000 9943 922;1257;1659;1869 10216 26334;26335;26336;26337;26338;26339 41229;41230;41231;41232;41233;41234;41235;41236;41237;41238;41239;41240;41241;41242 41236 14 NLDLAVLELMQSSVDNTK FYSLFSETINTELLKNLDLAVLELMQSSVD LAVLELMQSSVDNTKMVSAVLNGMLDQSFR K N L T K M 1 0 2 2 0 1 1 0 0 0 4 1 1 0 0 2 1 0 0 2 0 0 18 0 1989.0089 P78527 P78527 1574 1591 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 3.8738E-06 81.494 2 1 1.149 1.2092 92.608 3 Plateau 1.0894 1.1363 9.4674 2 0 Median 0.28066 0.22946 NaN 1 0 Median 27539000 13218000 14321000 22768000 9878800 12889000 4771200 3338900 1432300 9944 1665 10217 26340;26341;26342 41243;41244;41245;41246 41244 1459 4 NLDLDSIIAEVK QISETNVILSMDNNRNLDLDSIIAEVKAQY NNRNLDLDSIIAEVKAQYEDIAQKSKAEAE R N L V K A 1 0 1 2 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1328.7187 CON__P35908;P35908;CON__O95678;O95678;B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4;CON__Q5XKE5;Q5XKE5;CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;H0YIN9;H6VRG2 H6VRG2 344 355 KRT2;KRT75;KRT6C;KRT6A;KRT79;KRT5;KRT1 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 5 no no 2 8.6024E-20 132.55 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 739540000 739540000 0 403780000 403780000 0 335770000 335770000 0 + 9945 1309;1166;1162;859;1154;1147;1175 10218 26343;26344;26345;26346 41247;41248;41249;41250 41247 4 NLDLSWSELK ALCKALQIFCRGTERNLDLSWSELKKEVTL RGTERNLDLSWSELKKEVTLAVENELQGSV R N L L K K 0 0 1 1 0 0 1 0 0 0 3 1 0 0 0 2 0 1 0 0 0 0 10 0 1203.6136 G3V198;Q12769;E9PR16 G3V198 451 460 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.028805 43.282 1 0.87414 0.88353 NaN 1 Median 0.87414 0.88353 NaN 1 0 Median NaN NaN NaN 0 0 Median 8651700 4619400 4032300 8651700 4619400 4032300 0 0 0 9946 1271 10219 26347 41251 41251 1 NLDNAVLIGETGSGK LPIFQARGQLLAQLRNLDNAVLIGETGSGK NLDNAVLIGETGSGKTTQIPQYLYEGGISR R N L G K T 1 0 2 1 0 0 1 3 0 1 2 1 0 0 0 1 1 0 0 1 0 0 15 0 1486.7627 B4DIS6;Q9H6R0 B4DIS6 148 162 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 1.1211E-10 122.39 2 2 1.3616 1.2609 17.482 4 Median 1.3616 1.4509 12.008 2 0 Median 1.3819 1.1167 9.3318 2 0 Median 96240000 39597000 56644000 82866000 33888000 48978000 13375000 5708800 7665700 9947 983 10220 26348;26349;26350;26351 41252;41253;41254;41255;41256;41257;41258 41252 7 NLEASAVIQGLVK FCTSHSDNKIIIIHRNLEASAVIQGLVKDR HRNLEASAVIQGLVKDRSIFTGLMIDPRTK R N L V K D 2 0 1 0 0 1 1 1 0 1 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1340.7664 A8K330;Q8IWA0 A8K330 320 332 WDR75 WD repeat-containing protein 75 yes no 2 8.3339E-19 143.4 2 2 1.0428 1.002 3.5943 4 Median 0.9231 1.002 1.3779 2 0 Median 1.2119 0.99382 6.015 2 0 Median 142720000 66740000 75980000 80291000 38520000 41771000 62429000 28220000 34209000 9948 716 10221 26352;26353;26354;26355 41259;41260;41261;41262;41263;41264;41265;41266 41261 8 NLEAYAANPHSFVFTR RSRHQKRARAQAQLRNLEAYAANPHSFVFT LEAYAANPHSFVFTRGCTGRNIRQLSLDVR R N L T R G 3 1 2 0 0 0 1 0 1 0 1 0 0 2 1 1 1 0 1 1 0 0 16 0 1835.8955 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55 A0A0A6YYI3 21 36 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2;3 3.0096E-12 116.51 7 4 1.0875 1.0091 22.532 8 Median 0.70541 0.78147 26.597 4 0 Median 1.2178 1.0276 3.4107 4 0 Median 267080000 134380000 132690000 180770000 97140000 83629000 86308000 37245000 49064000 9949 493 10222 26356;26357;26358;26359;26360;26361;26362;26363;26364;26365;26366 41267;41268;41269;41270;41271;41272;41273;41274;41275;41276;41277;41278;41279;41280;41281;41282;41283;41284 41275 18 NLEAYGLDPYSVAAILQQR TLAQRASNKKVTVVRNLEAYGLDPYSVAAI YGLDPYSVAAILQQRCQASTTVNPAPGAKD R N L Q R C 3 1 1 1 0 2 1 1 0 1 3 0 0 0 1 1 0 0 2 1 0 0 19 0 2120.0902 Q6ZP26;P41214 Q6ZP26 365 383 EIF2D Eukaryotic translation initiation factor 2D yes no 2 1.8031E-05 63.76 2 3.1667 3.4159 NaN 1 Median 3.1667 3.4159 NaN 1 0 Median NaN NaN NaN 0 0 Median 5680100 723210 4956900 5680100 723210 4956900 0 0 0 9950 1560 10223 26367;26368 41285;41286 41285 2 NLEDDTLSECK SDSNLGGHSIRCKSKNLEDDTLSECKQVSD CKSKNLEDDTLSECKQVSDKAVSLQRKLRK K N L C K Q 0 0 1 2 1 0 2 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1322.566 Q14966;D6W5H1;A8K583;B4E187;A0A096LPH6;B4DF54;A0A096LPI0 Q14966 643 653 ZNF638 Zinc finger protein 638 yes no 2 0.0005685 74.162 1 0.76122 0.76105 NaN 1 Median 0.76122 0.76105 NaN 1 0 Median NaN NaN NaN 0 0 Median 7745600 2647800 5097800 7745600 2647800 5097800 0 0 0 9951 1746 10224 26369 41287 41287 1 NLEEAELHSTEK KTHLEDERDNSEKKKNLEEAELHSTEKVPC KKKNLEEAELHSTEKVPCIEFDDDDYDTDF K N L E K V 1 0 1 0 0 0 4 0 1 0 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1398.6627 B2RAN0;P54132;H0YNU5;Q3B7X0;H0YLV8 B2RAN0 274 285 BLM Bloom syndrome protein yes no 2 5.399E-05 92.611 2 2 2.0526 1.6637 NaN 1 Median NaN NaN NaN 0 0 Median 2.0526 1.6637 NaN 1 0 Median 4451500 797220 3654300 0 0 0 4451500 797220 3654300 9952 873 10225 26370;26371;26372;26373 41288;41289;41290;41291 41289 4 NLEENYCR TPHKHNRTPENFPCKNLEENYCRNPNGEKA PENFPCKNLEENYCRNPNGEKAPWCYTTNS K N L C R N 0 1 2 0 1 0 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1096.4608 CON__P06868;A0A0F7G8J1 CON__P06868 325 332 yes no 2 1.1146E-08 139.31 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33810000 33810000 0 26073000 26073000 0 7737500 7737500 0 + 9953 1157 10226 26374;26375;26376 41292;41293;41294 41292 3 NLENELELTK ASLQDTLEVLQSSYKNLENELELTKMDKMS QSSYKNLENELELTKMDKMSFVEKVNKMTA K N L T K M 0 0 2 0 0 0 3 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1201.619 P49454 P49454 2688 2697 CENPF Centromere protein F yes yes 2 0.00037039 88.495 1 0.90792 0.92125 NaN 1 Median 0.90792 0.92125 NaN 1 0 Median NaN NaN NaN 0 0 Median 18152000 8564800 9587000 18152000 8564800 9587000 0 0 0 9954 1581 10227 26377 41295 41295 1 NLEPALPGR EEENFKKPTRSNMQKNLEPALPGRWGGRSA RSNMQKNLEPALPGRWGGRSAENPPSGSVR K N L G R W 1 1 1 0 0 0 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 9 0 965.52943 B3KWX6;Q53EY5;B3KX14;Q15014;Q5JXX6;Q5JXX1;Q5JXX2;B4DXQ8 B3KWX6 32 40 MORF4L2 Mortality factor 4-like protein 2 yes no 2 0.037915 42.869 2 0.39522 0.34555 3.4479 2 Median NaN NaN NaN 0 0 Median 0.39522 0.34555 3.4479 2 0 Median 5054200 3597500 1456700 0 0 0 5054200 3597500 1456700 9955 950 10228 26378;26379 41296;41297 41296 2 NLEPGLR SFVNCGMKKEVKIDKNLEPGLRVTVRLNQQ KKEVKIDKNLEPGLRVTVRLNQQQHPDCKT K N L L R V 0 1 1 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 797.43955 Q5T280;Q9P041 Q5T280 220 226 C9orf114 Putative methyltransferase C9orf114 yes no 2 0.015224 81.297 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5117300 5117300 0 5117300 5117300 0 0 0 0 9956 1819 10229 26380;26381 41298;41299 41298 2 NLEVGIR APKKARVVQQQKLKKNLEVGIRKKIEHDVV VQQQKLKKNLEVGIRKKIEHDVVMKASSSL K N L I R K 0 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 799.4552 Q9UNZ5 Q9UNZ5 52 58 C19orf53 Leydig cell tumor 10 kDa protein homolog yes yes 2 0.013364 103.02 2 1 0.80643 0.91736 39.927 3 Plateau 0.80387 0.90354 2.1466 2 0 Median 0.53354 0.45272 NaN 1 0 Median 192540000 104710000 87826000 187900000 101870000 86028000 4643500 2845900 1797700 9957 2116 10230 26382;26383;26384 41300;41301;41302 41301 3 NLFELAR DLMSKWLGESEKLVKNLFELARQHKPSIIF GESEKLVKNLFELARQHKPSIIFIDEVDSL K N L A R Q 1 1 1 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 861.47085 A0A024R705;Q9UN37;I3L4J1;Q9NXK5;Q9UF30 A0A024R705 211 217 VPS4A;DKFZp434E0418 Vacuolar protein sorting-associated protein 4A yes no 2 0.036586 70.912 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9958 213 10231 26385 41303 41303 1 NLFEQLVR ______________________________ TMMLNVRNLFEQLVRRVEILSEGNEVQFIQ R N L V R R 0 1 1 0 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 8 0 1017.5607 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VWX0;F8W0L1;F8VZ66;F8VV47;F8VVE5;F8VUW9;F8VV39;F8VS54;Q9BZ74;F8VVY0;F8VXH1 B2RE34 10 17 RACGAP1;FKSG42 Rac GTPase-activating protein 1 yes no 2 0.0080668 80.229 2 1 1.0176 1.0944 16.916 3 Median 0.94152 0.99668 13.229 2 0 Median 1.5127 1.2723 NaN 1 0 Median 51754000 25124000 26630000 47301000 23475000 23826000 4452800 1649000 2803800 9959 68 10232 26386;26387;26388 41304;41305;41306;41307;41308 41307 5 NLFIQQIK CIVRAQNGRTPEDERNLFIQQIKEGTLQS_ RTPEDERNLFIQQIKEGTLQS_________ R N L I K E 0 0 1 0 0 2 0 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 1002.5862 A0A0A0MRJ2;Q5VTZ4;P18847;Q59GS7 A0A0A0MRJ2 140 147 ATF3 Cyclic AMP-dependent transcription factor ATF-3 yes no 2 0.0079089 81.297 2 2 1.3429 1.0587 18.375 3 Median 0.72367 0.79789 NaN 1 0 Median 1.3917 1.0919 4.3721 2 0 Median 64292000 29742000 34551000 56571000 26860000 29710000 7721500 2881400 4840100 9960 466 10233 26389;26390;26391;26392 41309;41310;41311;41312;41313;41314 41309 6 NLGFGMGIEFR VVKKQKPELLNKITKNLGFGMGIEFREGSL KITKNLGFGMGIEFREGSLVINSKNQYKLK K N L F R E 0 1 1 0 0 0 1 3 0 1 1 0 1 2 0 0 0 0 0 0 0 0 11 0 1239.607 Q9Y5B9;Q0VGA3 Q9Y5B9 347 357 SUPT16H FACT complex subunit SPT16 yes no 2 0.00046797 76.143 4 6 0.97355 0.80922 38.347 9 Median 1.125 1.3073 55.261 3 0 Plateau 0.94392 0.80205 29.279 6 0 Median 440380000 214850000 225530000 377880000 178420000 199450000 62505000 36427000 26078000 9961 2148 10234;10235 26393;26394;26395;26396;26397;26398;26399;26400;26401;26402 41315;41316;41317;41318;41319;41320;41321;41322;41323;41324;41325;41326;41327;41328 41326 1998 14 NLGFSPGDREENIR CYSLDGDNVRHGLNRNLGFSPGDREENIRR RNLGFSPGDREENIRRIAEVAKLFADAGLV R N L I R R 0 2 2 1 0 0 2 2 0 1 1 0 0 1 1 1 0 0 0 0 0 0 14 1 1602.775 Q5TB52;B4DWB5;O95340 Q5TB52 88 101 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 3 0.0030978 41.621 2 4.7487 5.2859 4.8423 2 Median 4.7487 5.2859 4.8423 2 0 Median NaN NaN NaN 0 0 Median 75938000 16301000 59637000 75938000 16301000 59637000 0 0 0 9962 1044 10236 26403;26404 41329;41330 41329 2 NLGFTAIPLHGQMSQSK CSTCNNTQRTALLLRNLGFTAIPLHGQMSQ GFTAIPLHGQMSQSKRLGSLNKFKAKARSI R N L S K R 1 0 1 0 0 2 0 2 1 1 2 1 1 1 1 2 1 0 0 0 0 0 17 0 1827.9302 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 278 294 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2;3 0.00028107 46.88 4 2 1.1266 1.151 39.837 6 Median 1.3794 1.4925 24.683 4 0 Median 0.86043 0.6915 8.8001 2 0 Median 159950000 55894000 104050000 147850000 49583000 98267000 12098000 6310900 5787300 9963 313 10237 26405;26406;26407;26408;26409;26410 41331;41332;41333;41334;41335;41336;41337 41334 230 7 NLGIPIITVLGDSK QLAVAMGPNIKQHVKNLGIPIITVLGDSKN KNLGIPIITVLGDSKNNVRAAALATVNAWA K N L S K N 0 0 1 1 0 0 0 2 0 3 2 1 0 0 1 1 1 0 0 1 0 0 14 0 1438.8395 Q14008 Q14008 941 954 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0001955 69.979 2 0.89605 0.90574 6.6247 2 Median 0.89605 0.90574 6.6247 2 0 Median NaN NaN NaN 0 0 Median 20845000 11062000 9782800 20845000 11062000 9782800 0 0 0 9964 1725 10238 26411;26412 41338;41339;41340;41341;41342 41341 5 NLGIVSVTSTDISSLYAK GTSVNYLDSAFRNIRNLGIVSVTSTDISSL IVSVTSTDISSLYAKAQHVARRHYGCNIVR R N L A K A 1 0 1 1 0 0 0 1 0 2 2 1 0 0 0 4 2 0 1 2 0 0 18 0 1866.9939 B4DXX1;B2R713;Q7Z2T5;X6RK96 B4DXX1 235 252 TRMT1L TRMT1-like protein yes no 2 3.4046E-05 63.727 2 1.2775 1.2967 NaN 1 Median 1.2775 1.2967 NaN 1 0 Median NaN NaN NaN 0 0 Median 10203000 6882500 3320800 10203000 6882500 3320800 0 0 0 9965 846 10239 26413;26414 41343;41344;41345;41346 41343 4 NLGPINEWWITGFDGGEK IYDDDPSLEGGVNGKNLGPINEWWITGFDG PINEWWITGFDGGEKALIGFSTSFAEYILM K N L E K A 0 0 2 1 0 0 2 4 0 2 1 1 0 1 1 0 1 2 0 0 0 0 18 0 2031.969 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 519 536 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 9.9461E-17 121.28 2 0.47197 0.47772 9.9884 2 Median 0.47197 0.47772 9.9884 2 0 Median NaN NaN NaN 0 0 Median 14482000 9284500 5197200 14482000 9284500 5197200 0 0 0 9966 222 10240 26415;26416 41347;41348;41349;41350 41350 4 NLGSINTELQDVQR IQKTKKLYIDSCARRNLGSINTELQDVQRI RNLGSINTELQDVQRIMVANIEEVLQRGEA R N L Q R I 0 1 2 1 0 2 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 14 0 1585.806 O75396;A0A087X1A9 O75396 134 147 SEC22B Vesicle-trafficking protein SEC22b yes no 2 2.329E-113 220.25 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18515000 1655600 16859000 15593000 0 15593000 2921500 1655600 1265900 9967 1403 10241 26417;26418;26419 41351;41352;41353 41351 3 NLGVVVAPHTLK KWELNPEIVARHFFKNLGVVVAPHTLKLPE FFKNLGVVVAPHTLKLPEEPITRWGEYWCE K N L L K L 1 0 1 0 0 0 0 1 1 0 2 1 0 0 1 0 1 0 0 3 0 0 12 0 1246.7398 Q9BYD2 Q9BYD2 196 207 MRPL9 39S ribosomal protein L9, mitochondrial yes yes 2 0.00034794 72.321 1 1.1873 1.213 NaN 1 Median 1.1873 1.213 NaN 1 0 Median NaN NaN NaN 0 0 Median 9318600 3899200 5419400 9318600 3899200 5419400 0 0 0 9968 2018 10242 26420 41354;41355;41356 41354 3 NLHNVLDSK RTLEMDRENLSVEIRNLHNVLDSKSVEVET LSVEIRNLHNVLDSKSVEVETQKLAYMELQ R N L S K S 0 0 2 1 0 0 0 0 1 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1038.5458 P49454 P49454 681 689 CENPF Centromere protein F yes yes 2 5.4614E-06 132.13 1 0.98708 1.0403 NaN 1 Median 0.98708 1.0403 NaN 1 0 Median NaN NaN NaN 0 0 Median 23783000 12400000 11384000 23783000 12400000 11384000 0 0 0 9969 1581 10243 26421 41357 41357 1 NLHSEISGK FGDSNTVMRFLNEQKNLHSEISGKRDKSEE FLNEQKNLHSEISGKRDKSEEVQKIAELCA K N L G K R 0 0 1 0 0 0 1 1 1 1 1 1 0 0 0 2 0 0 0 0 0 0 9 0 983.50361 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 932 940 DSP;DSP variant protein Desmoplakin yes no 2 0.04703 39.222 1 0.3991 0.31599 NaN 1 Median NaN NaN NaN 0 0 Median 0.3991 0.31599 NaN 1 0 Median 4961000 3453700 1507200 0 0 0 4961000 3453700 1507200 9970 1486 10244 26422 41358 41358 1 NLIAPIFLHR AFEKPTQIYRFLRTRNLIAPIFLHRTLTYM FLRTRNLIAPIFLHRTLTYMSHRNSRTNIK R N L H R T 1 1 1 0 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1192.7081 J3QQW9;Q15022;A8K1U9 J3QQW9 104 113 SUZ12 Polycomb protein SUZ12 yes no 2;3 0.0025324 69.628 4 2 1.0919 1.1356 18.82 5 Median 1.0399 1.1275 2.8418 3 0 Median 1.8744 1.5555 7.6177 2 0 Median 107180000 51378000 55802000 88432000 44387000 44045000 18748000 6990300 11757000 9971 1336 10245 26423;26424;26425;26426;26427;26428 41359;41360;41361;41362;41363;41364;41365 41365 5 NLIDAGVDALR LQVIGGNVVTAAQAKNLIDAGVDALRVGMG AQAKNLIDAGVDALRVGMGSGSICITQEVA K N L L R V 2 1 1 2 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1155.6248 H0Y4R1;P12268;B7Z1G4;Q6RUP8 H0Y4R1 244 254 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 2.4636E-08 121.5 2 2 1.2598 1.2279 17.716 4 Median 1.2451 1.4385 2.602 2 0 Median 1.2742 1.0597 1.0434 2 0 Median 392360000 173990000 218370000 354920000 157710000 197210000 37440000 16277000 21163000 9972 1282 10246 26429;26430;26431;26432 41366;41367;41368;41369;41370;41371;41372;41373;41374 41369 9 NLIIEAVTNLR GQDKPHETYRLLKRRNLIIEAVTNLRLIES LKRRNLIIEAVTNLRLIESLFTIQKMIMDQ R N L L R L 1 1 2 0 0 0 1 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1254.7296 Q6AHZ7;Q12789;Q6AWA4;H3BU37 Q6AHZ7 619 629 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.016089 45.997 2 1.4817 1.3107 17.339 2 Median NaN NaN NaN 0 0 Median 1.4817 1.3107 17.339 2 0 Median 4332100 2057600 2274400 0 0 0 4332100 2057600 2274400 9973 1699 10247 26433;26434 41375;41376 41375 2 NLILGSLR N L L R 0 1 1 0 0 0 0 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 8 0 884.54435 REV__K7ENW1 yes no 2 0.0049299 87.323 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 9974 2157 10248 26435 41377 41377 1 NLIQTLVSGIAPATR PSSQQEAQNRMSQMRNLIQTLVSGIAPATR NLIQTLVSGIAPATRSRATPQALLLDALCL R N L T R S 2 1 1 0 0 1 0 1 0 2 2 0 0 0 1 1 2 0 0 1 0 0 15 0 1552.8937 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6 E7EXA6 735 749 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 2 2.2745E-10 119.39 2 1.1782 1.1792 6.2433 2 Median 1.1782 1.1792 6.2433 2 0 Median NaN NaN NaN 0 0 Median 20511000 9505800 11005000 20511000 9505800 11005000 0 0 0 9975 524 10249 26436;26437 41378;41379;41380;41381 41379 4 NLLALIHR TLSQAIVKVVIPTERNLLALIHRMIEFVVR VVIPTERNLLALIHRMIEFVVREGPMFEAM R N L H R M 1 1 1 0 0 0 0 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 948.58688 O15042;E7ET15 O15042 426 433 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.014558 70.912 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9976 1374 10250 26438 41382 41382 1 NLLANQTLVYSQDLGEMTK VITLHKDQDLIKDPRNLLANQTLVYSQDLG NQTLVYSQDLGEMTKLNSKRVSFKLPKDQM R N L T K L 1 0 2 1 0 2 1 1 0 0 4 1 1 0 0 1 2 0 1 1 0 0 19 0 2137.0725 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1423 1441 CASC5 Protein CASC5 yes no 2 2.1166E-13 97.551 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11519000 0 11519000 11519000 0 11519000 0 0 0 9977 1928 10251 26439;26440;26441 41383;41384;41385;41386;41387 41387 1764 5 NLLCGFYGR VLMDQHMGFLCNEAKNLLCGFYGRHAELRF LCNEAKNLLCGFYGRHAELRFLDLVPSLQL K N L G R H 0 1 1 0 1 0 0 2 0 0 2 0 0 1 0 0 0 0 1 0 0 0 9 0 1098.528 W0HJ78;B0QYD3;Q9UH17;B7ZLZ1;A0A0K0MJ49;P31941 W0HJ78 244 252 APOBEC3B;APOBEC3A DNA dC->dU-editing enzyme APOBEC-3B;DNA dC->dU-editing enzyme APOBEC-3A yes no 2 0.025048 54.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9978 807 10252 26442 41388 41388 1 NLLCPFCLK SDVEAHFRAAHENTKNLLCPFCLKVSKMAT AHENTKNLLCPFCLKVSKMATPYMNHYMKH K N L L K V 0 0 1 0 2 0 0 0 0 0 3 1 0 1 1 0 0 0 0 0 0 0 9 0 1163.5831 Q8ND82;B3KUN2;A0A0D9SEJ8;Q86YH2;A8K124;B4DHL1;A0A024R5W1;Q6N043;H0YLA6;H0YL38 Q8ND82 441 449 ZNF280C;ZNF280B;SUHW4;ZNF280D Zinc finger protein 280C;Zinc finger protein 280B;Zinc finger protein 280D no no 2 0.012656 57.281 2 1.6362 1.3471 8.4142 2 Median NaN NaN NaN 0 0 Median 1.6362 1.3471 8.4142 2 0 Median 4078600 1635200 2443400 0 0 0 4078600 1635200 2443400 9979 1924;189 10253 26443;26444 41389;41390;41391;41392 41389 4 NLLDTYNTELLK LESSRRVHTSTPSDKNLLDTYNTELLKSDS SDKNLLDTYNTELLKSDSDNNNSDDCGNIL K N L L K S 0 0 2 1 0 0 1 0 0 0 4 1 0 0 0 0 2 0 1 0 0 0 12 0 1435.7559 Q03164 Q03164 2819 2830 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.0056707 51.436 3 2 1.4058 1.256 36.35 4 Median 0.91737 0.94166 3.3702 2 0 Median 2.1722 1.7524 9.7326 2 0 Median 29915000 13569000 16346000 20422000 11111000 9310700 9492900 2457600 7035300 9980 1680 10254 26445;26446;26447;26448;26449 41393;41394;41395;41396;41397;41398;41399 41393 7 NLLEAGK KPDGKMRGFGFVQFKNLLEAGKALKGMNMK GFGFVQFKNLLEAGKALKGMNMKEIKGRTV K N L G K A 1 0 1 0 0 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 743.41775 A0A024R753;Q9NW13;B4DJ90;C9JE21 A0A024R753 163 169 RBM28 RNA-binding protein 28 yes no 2 0.02684 80.462 1 1.0244 1.0712 NaN 1 Median 1.0244 1.0712 NaN 1 0 Median NaN NaN NaN 0 0 Median 34404000 17736000 16669000 34404000 17736000 16669000 0 0 0 9981 214 10255 26450 41400 41400 1 NLLELEVQK KELEQLKTEEEELQRNLLELEVQKEQTLAQ EEELQRNLLELEVQKEQTLAQIDFMQKQRN R N L Q K E 0 0 1 0 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 1084.6128 Q8NG31;H0YCZ2 Q8NG31 2098 2106 CASC5 Protein CASC5 yes no 2 0.021536 49.423 1 1.0445 0.81035 NaN 1 Median NaN NaN NaN 0 0 Median 1.0445 0.81035 NaN 1 0 Median 3517700 1788300 1729400 0 0 0 3517700 1788300 1729400 9982 1928 10256 26451 41401;41402;41403 41402 3 NLLESIPTHSDQEK IERKENIKPSLGSKKNLLESIPTHSDQEKE KNLLESIPTHSDQEKEVNIKKPEDNENLDD K N L E K E 0 0 1 1 0 1 2 0 1 1 2 1 0 0 1 2 1 0 0 0 0 0 14 0 1609.7948 A0PJ81;A0A024R3V1;A0A024R3R1;Q4LE39 A0PJ81 216 229 ARID4B AT-rich interactive domain-containing protein 4B yes no 2 0.0014549 53.569 2 1.2978 1.3401 NaN 1 Median 1.2978 1.3401 NaN 1 0 Median NaN NaN NaN 0 0 Median 6835900 4292400 2543500 6835900 4292400 2543500 0 0 0 9983 138 10257 26452;26453 41404;41405 41405 2 NLLESYHVPELIK KMNVKIPENIYRGIRNLLESYHVPELIKDA IRNLLESYHVPELIKDAHLLVESKNLDFQK R N L I K D 0 0 1 0 0 0 2 0 1 1 3 1 0 0 1 1 0 0 1 1 0 0 13 0 1553.8453 E5KNY5;P42704;B4DSR0 E5KNY5 628 640 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 2.4798E-13 127.17 3 2 2.3352 2.3656 40.392 5 Median 2.4886 2.4589 5.6212 3 0 Median 1.4975 1.1986 8.5474 2 0 Median 96887000 29240000 67647000 88276000 26091000 62185000 8610900 3148700 5462100 9984 1207 10258 26454;26455;26456;26457;26458 41406;41407;41408;41409;41410;41411;41412;41413;41414 41409 9 NLLFQDCEK DVDPEKLEMESKLHRNLLFQDCEKEQDNKT ESKLHRNLLFQDCEKEQDNKTKDPTHDVKT R N L E K E 0 0 1 1 1 1 1 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1165.5438 B2RMQ4;Q8WWK9 B2RMQ4 555 563 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.0091583 60.436 2 1.3054 1.0543 3.3695 2 Median NaN NaN NaN 0 0 Median 1.3054 1.0543 3.3695 2 0 Median 13620000 6061600 7558300 0 0 0 13620000 6061600 7558300 9985 895 10259 26459;26460 41415;41416 41416 2 NLLNLDVIK EQLVTLSLLPESRWKNLLNLDVIKKKNKPK PESRWKNLLNLDVIKKKNKPKEPPKVPKSA K N L I K K 0 0 2 1 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 9 0 1040.623 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 708 716 WDR36 WD repeat-containing protein 36 yes no 2 0.00034217 101.43 2 2 1.0331 0.99293 5.2666 4 Median 0.8472 0.95302 1.7943 2 0 Median 1.2685 1.0388 2.3819 2 0 Median 254800000 133490000 121310000 193970000 105590000 88377000 60832000 27896000 32935000 9986 486 10260 26461;26462;26463;26464 41417;41418;41419;41420;41421;41422 41418 6 NLLNLDVIKK EQLVTLSLLPESRWKNLLNLDVIKKKNKPK ESRWKNLLNLDVIKKKNKPKEPPKVPKSAP K N L K K K 0 0 2 1 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 1 0 0 10 1 1168.718 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 708 717 WDR36 WD repeat-containing protein 36 yes no 2 0.035007 46.462 1 1.5363 1.3614 NaN 1 Median NaN NaN NaN 0 0 Median 1.5363 1.3614 NaN 1 0 Median 2311300 721010 1590300 0 0 0 2311300 721010 1590300 9987 486 10261 26465 41423 41423 1 NLLNSVIGR SRASRDLLKEFPQPKNLLNSVIGRALGISH EFPQPKNLLNSVIGRALGISHAKDKLVYVH K N L G R A 0 1 2 0 0 0 0 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 984.57163 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 27 35 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 1.3179E-05 124.08 2 2 1.2792 1.3597 13.163 4 Median 1.2655 1.369 9.6645 2 0 Median 1.4562 1.2638 19.037 2 0 Median 110830000 47636000 63190000 100870000 43196000 57676000 9955100 4440400 5514800 9988 122 10262 26466;26467;26468;26469 41424;41425;41426;41427;41428;41429;41430 41426 7 NLLQELK NAAEESLPEIQKEHRNLLQELKVIQENEHA PEIQKEHRNLLQELKVIQENEHALQKDALS R N L L K V 0 0 1 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 856.50182 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 992 998 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.01251 105.39 2 2 1.2378 1.2207 19.712 4 Median 0.87056 1.0273 2.9002 2 0 Median 1.7584 1.4426 2.133 2 0 Median 984170000 509200000 474970000 917960000 486050000 431910000 66214000 23155000 43060000 9989 2070 10263 26470;26471;26472;26473 41431;41432;41433;41434;41435;41436;41437 41431 7 NLLQLLPIPK GCMYQVVQTIGSDGKNLLQLLPIPKSSGNL GSDGKNLLQLLPIPKSSGNLIPLVQSSVMS K N L P K S 0 0 1 0 0 1 0 0 0 1 4 1 0 0 2 0 0 0 0 0 0 0 10 0 1147.7329 Q5T3J3 Q5T3J3 41 50 LRIF1 Ligand-dependent nuclear receptor-interacting factor 1 yes yes 2 0.0013339 74.127 2 0.55998 0.63657 NaN 1 Median 0.55998 0.63657 NaN 1 0 Median NaN NaN NaN 0 0 Median 2525400 1052800 1472600 2525400 1052800 1472600 0 0 0 9990 1821 10264 26474;26475 41438;41439 41438 2 NLLSCVYSCPSYIAK EKKLKSHQKLSETLKNLLSCVYSCPSYIAK NLLSCVYSCPSYIAKDLMKVLQGVNGEMVL K N L A K D 1 0 1 0 2 0 0 0 0 1 2 1 0 0 1 3 0 0 2 1 0 0 15 0 1773.843 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1 B2RWN5 1002 1016 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 8.4103E-06 94.191 2 1 0.83951 0.85787 4.9728 3 Median 0.82227 0.85629 0.26196 2 0 Median 1.1741 0.93325 NaN 1 0 Median 70972000 35007000 35965000 51719000 26530000 25189000 19253000 8476600 10776000 9991 897 10265 26476;26477;26478 41440;41441;41442;41443;41444;41445;41446 41441 7 NLLSDCSVVSTSLEDK MFESTAADLGSVVRKNLLSDCSVVSTSLED LLSDCSVVSTSLEDKQQVPSEDSMEKVKVY K N L D K Q 0 0 1 2 1 0 1 0 0 0 3 1 0 0 0 4 1 0 0 2 0 0 16 0 1765.8404 O95235;D6RBN1;D6R9E4 O95235 38 53 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 5.709E-09 109.44 2 2 1.1392 1.0802 13.662 4 Median 0.88171 0.96293 3.8988 2 0 Median 1.4865 1.212 3.9266 2 0 Median 138570000 64640000 73934000 80327000 40578000 39748000 58248000 24062000 34186000 9992 1421 10266 26479;26480;26481;26482 41447;41448;41449;41450;41451;41452;41453 41450 7 NLLTAAADAIER EELVSERTEAFTIARNLLTAAADAIERIMS IARNLLTAAADAIERIMSSYKEVTELAGYT R N L E R I 4 1 1 1 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 12 0 1256.6725 Q6TGM1;Q6TGM0;P33897 Q6TGM1 40 51 ALD;ABCD1 ATP-binding cassette sub-family D member 1 yes no 2 0.024708 49.5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 827720 0 827720 0 0 0 827720 0 827720 9993 1538 10267 26483 41454 41454 1 NLLTVTSSDEMMK RVVQMLGSLGGQINKNLLTVTSSDEMMKSY NKNLLTVTSSDEMMKSYVAWDREKRLSFAV K N L M K S 0 0 1 1 0 0 1 0 0 0 2 1 2 0 0 2 2 0 0 1 0 0 13 0 1467.6949 P78527;B4DL41 P78527 869 881 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 1.1375E-08 115.57 2 1.149 1.1827 2.3011 2 Median 1.149 1.1827 2.3011 2 0 Median NaN NaN NaN 0 0 Median 60341000 28584000 31756000 60341000 28584000 31756000 0 0 0 9994 1665 10268 26484;26485 41455;41456 41455 1460;1461 2 NLLVTSGK GHKDAITQALFLREKNLLVTSGKDTMVKWW ALFLREKNLLVTSGKDTMVKWWDLDTQHCF K N L G K D 0 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 8 0 830.48617 Q5TDG3;Q9UNX4 Q5TDG3 162 169 WDR3 WD repeat-containing protein 3 yes no 2 0.013467 65.246 1 1 1.0538 1.0009 2.676 2 Median 0.87407 0.98212 NaN 1 0 Median 1.2704 1.02 NaN 1 0 Median 81691000 40698000 40993000 73965000 36914000 37050000 7726300 3783100 3943100 9995 1827 10269 26486;26487 41457;41458 41457 2 NLMQFHTVGTK LAKVIQIATSSSTAKNLMQFHTVGTKTKLS STAKNLMQFHTVGTKTKLSTLTLLWPCPMT K N L T K T 0 0 1 0 0 1 0 1 1 0 1 1 1 1 0 0 2 0 0 1 0 0 11 0 1274.6441 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 236 246 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0099761 52.725 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9996 122 10270 26488 41459 41459 108 1 NLNDSSLFVSAEEFGHLLDENMGSK FDFAGSFQGPRKKKRNLNDSSLFVSAEEFG AEEFGHLLDENMGSKFDNIA__________ R N L S K F 1 0 3 2 0 0 3 2 1 0 4 1 1 2 0 4 0 0 0 1 0 0 25 0 2752.265 B2R5U7;Q03701 B2R5U7 969 993 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 6.4034E-07 48.115 1 0.4968 0.51563 NaN 1 Median 0.4968 0.51563 NaN 1 0 Median NaN NaN NaN 0 0 Median 9873100 5994900 3878200 9873100 5994900 3878200 0 0 0 9997 836;1683 10271 26489 41460 41460 664 1 NLNHVSYGR LNAGGVTVSYFEWLKNLNHVSYGRLTFKYE YFEWLKNLNHVSYGRLTFKYERDSNYHLLM K N L G R L 0 1 2 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1058.5257 B4E0N9;B4DMG8;B4DMF5;B3KT18;Q53GW3;E9KL48;P00367;Q14400;Q9BSD0;A0A140VK14;P49448 B4E0N9 377 385 GLUD1;GLUD2 Glutamate dehydrogenase;Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.049868 38.086 1 0.15064 0.13047 NaN 1 Median NaN NaN NaN 0 0 Median 0.15064 0.13047 NaN 1 0 Median 1213200 1046700 166460 0 0 0 1213200 1046700 166460 9998 941 10272 26490 41461 41461 1 NLPFDFTWK HAPGVARKACQIFVRNLPFDFTWKMLKDKF CQIFVRNLPFDFTWKMLKDKFNECGHVLYA R N L W K M 0 0 1 1 0 0 0 0 0 0 1 1 0 2 1 0 1 1 0 0 0 0 9 0 1166.576 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96 P52272 659 667 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.010772 58.981 2 1 1.3243 1.5142 35.247 3 Plateau 1.3151 1.4924 2.047 2 0 Median 0.99422 0.81091 NaN 1 0 Median 239730000 104490000 135240000 233290000 101430000 131850000 6446300 3055100 3391200 9999 1599 10273 26491;26492;26493 41462;41463;41464;41465;41466 41462 5 NLPGLVQEGEPFSEEATLFTK ITFLLAGIECPRGARNLPGLVQEGEPFSEE QEGEPFSEEATLFTKELVLQREVEVEVESM R N L T K E 1 0 1 0 0 1 4 2 0 0 3 1 0 2 2 1 2 0 0 1 0 0 21 0 2305.1478 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8;H7C597 A0A140VK49 566 586 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 3.8164E-09 91.812 2 1.5187 1.6357 0.91907 2 Median 1.5187 1.6357 0.91907 2 0 Median NaN NaN NaN 0 0 Median 71130000 31392000 39737000 71130000 31392000 39737000 0 0 0 10000 618 10274 26494;26495 41467;41468;41469;41470;41471 41470 5 NLPIYSEEIVEMYK YTYSGLFCVVINPYKNLPIYSEEIVEMYKG KNLPIYSEEIVEMYKGKKRHEMPPHIYAIT K N L Y K G 0 0 1 0 0 0 3 0 0 2 1 1 1 0 1 1 0 0 2 1 0 0 14 0 1726.8488 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;Q5BKV1 A0A024R1N1 126 139 MYH9 Myosin-9 yes no 2 0.032797 30.336 2 3.242 2.5351 15.374 2 Median NaN NaN NaN 0 0 Median 3.242 2.5351 15.374 2 0 Median 7550800 1845600 5705200 0 0 0 7550800 1845600 5705200 10001 81 10275 26496;26497 41472;41473 41472 2 NLPLADQGSSHHITVK IRRQIEHCEGRMTLKNLPLADQGSSHHITV LPLADQGSSHHITVKINELKSVQNDSQAIA K N L V K I 1 0 1 1 0 1 0 1 2 1 2 1 0 0 1 2 1 0 0 1 0 0 16 0 1715.8955 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 690 705 DSP;DSP variant protein Desmoplakin yes no 3 7.5923E-05 69.485 2 1 0.50964 0.46581 13.842 2 Median 0.48728 0.51371 NaN 1 0 Median 0.53303 0.42238 NaN 1 0 Median 49528000 39952000 9576000 47187000 38792000 8394600 2341600 1160300 1181400 10002 1486 10276 26498;26499;26500 41474;41475;41476 41475 3 NLPLPPPPPPR PPPPGRGGRGGSRARNLPLPPPPPPRGGDL SRARNLPLPPPPPPRGGDLMAYDRRGRPGD R N L P R G 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 0 0 0 0 0 0 11 0 1193.6921 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2;B3KU16 B4DUQ1 282 292 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 0.0011873 69.423 2 1 1.6095 1.8347 36.048 3 Plateau 1.593 1.7995 5.5996 2 0 Median 1.1436 0.96746 NaN 1 0 Median 140240000 55584000 84653000 135300000 52833000 82470000 4933500 2750500 2182900 10003 102 10277 26501;26502;26503 41477;41478;41479;41480;41481;41482;41483;41484 41480 8 NLPNVIINEK RFLIKAPEGPPRKDKNLPNVIINEKRNIHA PRKDKNLPNVIINEKRNIHAAAHQVRVLPY K N L E K R 0 0 3 0 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1152.6503 Q9BVJ6;B4E343 Q9BVJ6 663 672 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0035438 64.04 2 2 1.4994 1.1623 5.8247 3 Median 1.0078 1.0965 NaN 1 0 Median 1.5048 1.1966 4.1172 2 0 Median 74823000 35620000 39203000 48372000 24819000 23553000 26451000 10801000 15650000 10004 2008 10278 26504;26505;26506;26507 41485;41486;41487;41488;41489;41490;41491;41492 41486 8 NLPYTSTEEDLEK EEEEDLAESGRLFVRNLPYTSTEEDLEKLF VRNLPYTSTEEDLEKLFSKYGPLSELHYPI R N L E K L 0 0 1 1 0 0 3 0 0 0 2 1 0 0 1 1 2 0 1 0 0 0 13 0 1537.7148 Q9Y4C8 Q9Y4C8 408 420 RBM19 Probable RNA-binding protein 19 yes yes 2 0.0017486 69.979 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3162900 0 3162900 3162900 0 3162900 0 0 0 10005 2145 10279 26508;26509;26510 41493;41494;41495 41495 3 NLPYVYIPSK PIEVYCHLPVMCEDRNLPYVYIPSKTDLGA MCEDRNLPYVYIPSKTDLGAAAGSKRPTCV R N L S K T 0 0 1 0 0 0 0 0 0 1 1 1 0 0 2 1 0 0 2 1 0 0 10 0 1192.6492 Q9NX24;D6RC52;D6RCB9;H0YC83 Q9NX24 102 111 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 2 0.0038105 62.823 1 0.70063 0.78919 NaN 1 Median 0.70063 0.78919 NaN 1 0 Median NaN NaN NaN 0 0 Median 124300000 75776000 48526000 124300000 75776000 48526000 0 0 0 10006 2077 10280 26511 41496;41497 41496 2 NLQCLVIDEADR RLLDHMQNTPGFMYKNLQCLVIDEADRILD MYKNLQCLVIDEADRILDVGFEEELKQIIK K N L D R I 1 1 1 2 1 1 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1444.698 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452 Q4ZG72 202 213 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 6.5446E-18 143.61 1 2 1.4461 1.2614 3.7924 3 Median 1.1726 1.3462 NaN 1 0 Median 1.4641 1.2606 0.090258 2 0 Median 143960000 54916000 89039000 79454000 30645000 48808000 64502000 24271000 40231000 10007 303 10281 26512;26513;26514 41498;41499;41500;41501;41502 41502 5 NLQDVVER DALDPNAYEAFKASRNLQDVVERVLHNAQE EAFKASRNLQDVVERVLHNAQEVEKEPGQR R N L E R V 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 971.50361 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 446 453 LIG3 DNA ligase 3;DNA ligase yes no 2 0.01034 76.478 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10008 1589 10282 26515 41503 41503 1 NLQEAEEWYK ALRDVRQQYESVAAKNLQEAEEWYKSKFAD SVAAKNLQEAEEWYKSKFADLSEAANRNND K N L Y K S 1 0 1 0 0 1 3 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 10 0 1308.5986 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8;H7C5W5;B3KWQ6;P41219;F8W835 V9HWE1 283 292 HEL113;VIM;PRPH Vimentin;Peripherin yes no 2 1.7258E-12 148.52 2 2 2.2583 2.119 34.706 4 Median 1.4144 1.5919 4.2077 2 0 Median 3.6021 2.8862 7.4566 2 0 Median 217170000 87083000 130090000 192830000 81739000 111090000 24344000 5344000 19000000 10009 1457 10283 26516;26517;26518;26519 41504;41505;41506;41507;41508;41509;41510 41505 7 NLQEFLGGLSPGVLDR STPSRGLNRVHLQCRNLQEFLGGLSPGVLD LQEFLGGLSPGVLDRLYGHPATCLAVFREL R N L D R L 0 1 1 1 0 1 1 3 0 0 4 0 0 1 1 1 0 0 0 1 0 0 16 0 1713.905 B4DNU0;Q53HH3;Q92759;A0A0G2JHJ2 B4DNU0 24 39 GTF2H4 General transcription factor IIH subunit 4 yes no 2 0.045395 47.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57533000 57533000 0 57533000 57533000 0 0 0 0 10010 1016 10284 26520 41511 41511 1 NLQEGNEVDSQSSIR RLLRITKRTGMKEEKNLQEGNEVDSQSSIR NLQEGNEVDSQSSIRTEAKEASGETTGVDI K N L I R T 0 1 2 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 0 1 0 0 15 0 1674.7809 B4DLG2;O75152;E9PQ61 B4DLG2 468 482 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 6.7171E-22 169.23 2 1.8096 1.8111 NaN 1 Median 1.8096 1.8111 NaN 1 0 Median NaN NaN NaN 0 0 Median 15284000 4588800 10695000 15284000 4588800 10695000 0 0 0 10011 996 10285 26521;26522 41512;41513 41513 2 NLQEIQQAGER AAETEGISELPHVERNLQEIQQAGERLRSR HVERNLQEIQQAGERLRSRTLTRTSQETAD R N L E R L 1 1 1 0 0 3 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1284.6422 Q8N1F7;A8K897;H3BVG0;H3BV11;H3BRI8;H3BM93 Q8N1F7 32 42 NUP93 Nuclear pore complex protein Nup93 yes no 2 9.9605E-12 127.4 2 1 1.5386 1.4673 42.471 2 Median 1.926 1.9813 NaN 1 0 Median 1.2291 1.0867 NaN 1 0 Median 16714000 9306200 7408100 15591000 8751100 6840000 1123300 555140 568110 10012 1904 10286 26523;26524;26525 41514;41515;41516;41517;41518 41517 5 NLQEQVMAVTAQVK GVLESDLPSAVTLLKNLQEQVMAVTAQVKS KNLQEQVMAVTAQVKSLTQKVQAGAYPTEK K N L V K S 2 0 1 0 0 3 1 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 14 0 1557.8185 Q8NEJ9;H0YJ17 Q8NEJ9 20 33 NGDN Neuroguidin yes no 2 1.5997E-06 107.97 1 4 1.007 1.0273 37.229 5 Median 1.007 1.0925 NaN 1 0 Median 0.94112 0.74797 38.409 4 0 Median 68252000 35284000 32968000 45353000 23226000 22127000 22899000 12058000 10841000 10013 1927 10287;10288 26526;26527;26528;26529;26530 41519;41520;41521;41522;41523;41524 41523 1760 5 NLQLFMENK IRYYNKVPVEKRVFKNLQLFMENKQPEDDL EKRVFKNLQLFMENKQPEDDLFDRLNTGIL K N L N K Q 0 0 2 0 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 9 0 1135.5696 P11387;B9EG90;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;E5RIC7;B4E061 P11387 550 558 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 5.1984E-06 126.41 4 5 1.4937 1.3051 33.141 9 Median 1.5036 1.7177 34.759 4 0 Median 1.4903 1.2237 27.454 5 0 Median 431440000 172120000 259320000 376570000 147730000 228840000 54875000 24390000 30485000 10014 1470 10289;10290 26531;26532;26533;26534;26535;26536;26537;26538;26539 41525;41526;41527;41528;41529;41530;41531;41532;41533;41534;41535;41536;41537;41538;41539;41540;41541;41542;41543;41544 41532 1189 20 NLQLFMENKQPEDDLFDR IRYYNKVPVEKRVFKNLQLFMENKQPEDDL LFMENKQPEDDLFDRLNTGILNKHLQDLME K N L D R L 0 1 2 3 0 2 2 0 0 0 3 1 1 2 1 0 0 0 0 0 0 0 18 1 2251.0579 P11387;B9EG90 P11387 550 567 TOP1 DNA topoisomerase 1 yes no 3 3.0493E-06 62.475 3 1.1971 1.0352 40.594 2 Median NaN NaN NaN 0 0 Median 1.1971 1.0352 40.594 2 0 Median 36458000 19357000 17101000 0 0 0 36458000 19357000 17101000 10015 1470 10291;10292 26540;26541;26542 41545;41546;41547;41548 41547 1189 4 NLQNLLILTAIK LEKIVLDNSVFSEHRNLQNLLILTAIKADR EHRNLQNLLILTAIKADRTRVMEYINRLDN R N L I K A 1 0 2 0 0 1 0 0 0 2 4 1 0 0 0 0 1 0 0 0 0 0 12 0 1352.8391 A0A087WVQ6;Q00610;A0A087WX41;P53675 A0A087WVQ6 1027 1038 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.00073439 66.595 2 2.1862 2.2289 1.8505 2 Median 2.1862 2.2289 1.8505 2 0 Median NaN NaN NaN 0 0 Median 9638700 3376600 6262100 9638700 3376600 6262100 0 0 0 10016 419 10293 26543;26544 41549;41550 41549 2 NLQQELETQNQK EILEKTTTIYEEDKRNLQQELETQNQKLQR DKRNLQQELETQNQKLQRQFSDKRRLEARL R N L Q K L 0 0 2 0 0 4 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1471.7267 H7BYN4;Q02241 H7BYN4 588 599 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 1.6969E-47 179.1 1 2 1.5975 1.2856 3.0842 2 Median NaN NaN NaN 0 0 Median 1.5975 1.2856 3.0842 2 0 Median 8966300 3332300 5634000 0 0 0 8966300 3332300 5634000 10017 1312 10294 26545;26546;26547 41551;41552;41553;41554;41555;41556 41551 6 NLQSFGTEEPAYSTR SARLSQSSQDSSPVRNLQSFGTEEPAYSTR NLQSFGTEEPAYSTRRVTRSQQQPTPVTPK R N L T R R 1 1 1 0 0 1 2 1 0 0 1 0 0 1 1 2 2 0 1 0 0 0 15 0 1698.7849 O95251 O95251 61 75 KAT7 Histone acetyltransferase KAT7 yes yes 2 0.0002248 73.848 2 2 0.82478 0.77186 28.469 4 Median 0.6013 0.622 3.57 2 0 Median 1.1891 1.0057 10.472 2 0 Median 56608000 33664000 22944000 41590000 26935000 14655000 15018000 6729000 8288700 10018 1422 10295 26548;26549;26550;26551 41557;41558;41559;41560;41561;41562;41563;41564 41557 8 NLQTYLQEEDTR SDKNSSVNLKIQVLKNLQTYLQEEDTRMQQ VLKNLQTYLQEEDTRMQQADRDWKKVAKQE K N L T R M 0 1 1 1 0 2 2 0 0 0 2 0 0 0 0 0 2 0 1 0 0 0 12 0 1508.7107 Q6IEH8;Q6KC79 Q6IEH8 2236 2247 NIPBL Nipped-B-like protein yes no 2 0.0048714 67.726 1 2 0.9287 0.87267 6.3501 3 Median 0.88304 0.87267 NaN 1 0 Median 1.0149 0.87203 8.9801 2 0 Median 23246000 10071000 13175000 15104000 6091800 9012300 8142000 3979300 4162600 10019 1843 10296 26552;26553;26554 41565;41566;41567 41567 2 NLQYYDISAK DRKVKAKSIVFHRKKNLQYYDISAKSNYNF FHRKKNLQYYDISAKSNYNFEKPFLWLARK K N L A K S 1 0 1 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 2 0 0 0 10 0 1213.5979 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 160 169 RAN GTP-binding nuclear protein Ran yes no 2 0.00050835 85.731 2 2 1.6616 1.5994 45.233 4 Median 2.0867 2.3552 3.1834 2 0 Median 1.3467 1.0778 4.2732 2 0 Median 195100000 65160000 129940000 172520000 55740000 116790000 22575000 9420600 13154000 10020 1082 10297 26555;26556;26557;26558 41568;41569;41570;41571;41572;41573;41574;41575;41576;41577;41578 41569 11 NLSELQDTSLQQLVSQR TDEGKEINEKSSQLKNLSELQDTSLQQLVS SELQDTSLQQLVSQRHSTPQNKNAVSVHSN K N L Q R H 0 1 1 1 0 4 1 0 0 0 4 0 0 0 0 3 1 0 0 1 0 0 17 0 1958.0069 Q5QJE6;J3KP30;B7Z854 Q5QJE6 322 338 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 2.1131E-111 238.43 2 2 1.1042 1.0964 14.257 4 Median 0.85323 0.96797 4.2283 2 0 Median 1.4222 1.2321 3.1083 2 0 Median 331750000 166850000 164900000 205990000 114850000 91139000 125770000 52001000 73765000 10021 1813 10298 26559;26560;26561;26562 41579;41580;41581;41582;41583;41584;41585;41586;41587 41586 9 NLSFFLTPPCAR WASILWYNMLVAEPRNLSFFLTPPCARWAQ EPRNLSFFLTPPCARWAQLSEVLSWQFSSV R N L A R W 1 1 1 0 1 0 0 0 0 0 2 0 0 2 2 1 1 0 0 0 0 0 12 0 1421.7126 J3KPM9;P42224 J3KPM9 485 496 STAT1 Signal transducer and activator of transcription;Signal transducer and activator of transcription 1-alpha/beta yes no 2 0.0046216 64.82 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3021500 0 3021500 3021500 0 3021500 0 0 0 10022 1326 10299 26563;26564 41588;41589 41589 2 NLSFNELYPSGTLK EQEKLEAQDSGEEARNLSFNELYPSGTLKL RNLSFNELYPSGTLKLQYNFDTIDQQFCDL R N L L K L 0 0 2 0 0 0 1 1 0 0 3 1 0 1 1 2 1 0 1 0 0 0 14 0 1581.8039 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1539 1552 AHCTF1 Protein ELYS yes no 2 2.039E-06 106.67 2 2 2.492 2.2204 15.119 4 Median 1.9135 1.9646 0.9494 2 0 Median 3.1695 2.5477 3.0858 2 0 Median 91926000 26757000 65169000 47781000 15955000 31825000 44145000 10802000 33344000 10023 1945 10300 26565;26566;26567;26568 41590;41591;41592;41593;41594;41595;41596 41594 7 NLSPGAVESDVR DQTVRVWDISGLRKKNLSPGAVESDVRGIT RKKNLSPGAVESDVRGITGVDLFGTTDAVV K N L V R G 1 1 1 1 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 2 0 0 12 0 1242.6204 P53621 P53621 171 182 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.00011875 94.692 2 1.8058 1.9313 5.2157 2 Median 1.8058 1.9313 5.2157 2 0 Median NaN NaN NaN 0 0 Median 69022000 26015000 43007000 69022000 26015000 43007000 0 0 0 10024 1607 10301 26569;26570 41597;41598;41599;41600 41599 4 NLSQEIIELLK RELNSTYSEQDPLLKNLSQEIIELLKKLVG PLLKNLSQEIIELLKKLVGLESFSLAFASV K N L L K K 0 0 1 0 0 1 2 0 0 2 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1298.7446 O75691;B4DN27 O75691 2691 2701 UTP20 Small subunit processome component 20 homolog yes no 2 2.4636E-08 121.5 2 1.2172 1.289 16.36 2 Median 1.2172 1.289 16.36 2 0 Median NaN NaN NaN 0 0 Median 182190000 77516000 104680000 182190000 77516000 104680000 0 0 0 10025 1412 10302 26571;26572 41601;41602;41603 41603 3 NLSSNEAISLEEIR KGFNKVVLKHLKKTKNLSSNEAISLEEIRI KNLSSNEAISLEEIRIRVVQMLGSLGGQIN K N L I R I 1 1 2 0 0 0 3 0 0 2 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1573.7948 P78527;B4DL41 P78527 839 852 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 2.659E-11 153.34 2 2 0.45026 0.4371 53.053 4 Median 0.62725 0.70114 7.4824 2 0 Median 0.32661 0.28074 3.2644 2 0 Median 175270000 114050000 61226000 117200000 69253000 47951000 58068000 44793000 13275000 10026 1665 10303 26573;26574;26575;26576 41604;41605;41606;41607;41608;41609;41610 41605 7 NLSYQVHR DSDSKLVENCVCLLRNLSYQVHREIPQAER NCVCLLRNLSYQVHREIPQAERYQEAAPNV R N L H R E 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 8 0 1015.5199 Q7KZJ3;A0A024R4Z0;Q96FS1;Q68DU0;C9JZR2;O60716;A0A024R4Y7 Q7KZJ3 262 269 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 2 0.035129 56.122 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9621800 9621800 0 9621800 9621800 0 0 0 0 10027 165 10304 26577 41611 41611 1 NLTALGLNLVASGGTAK LFSVSDKTGLVEFARNLTALGLNLVASGGT TALGLNLVASGGTAKALRDAGLAVRDVSEL R N L A K A 3 0 2 0 0 0 0 3 0 0 4 1 0 0 0 1 2 0 0 1 0 0 17 0 1598.8992 V9HWH7;B2R7P8;P31939;F8WEF0 V9HWH7 23 39 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 5.7526E-25 138.21 2 5.1432 5.1567 NaN 1 Median 5.1432 5.1567 NaN 1 0 Median NaN NaN NaN 0 0 Median 21355000 2258200 19096000 21355000 2258200 19096000 0 0 0 10028 852 10305 26578;26579 41612;41613 41613 2 NLTEDNSQNQDLIAK DSNPFLTQWVIYAIRNLTEDNSQNQDLIAK NLTEDNSQNQDLIAKMEEQGLADASLLKKV R N L A K M 1 0 3 2 0 2 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 15 0 1701.817 Q9UBB4;Q9NTC6;B1AHE3 Q9UBB4 424 438 ATXN10;DKFZp434I1726 Ataxin-10 yes no 2 2.4296E-06 117.23 2 1.7117 1.8058 NaN 1 Median 1.7117 1.8058 NaN 1 0 Median NaN NaN NaN 0 0 Median 20831000 5600900 15230000 20831000 5600900 15230000 0 0 0 10029 2095 10306 26580;26581 41614;41615 41614 2 NLTVELEQK EGEHQLWKEQNLELRNLTVELEQKIQVLQS QNLELRNLTVELEQKIQVLQSKNASLQDTL R N L Q K I 0 0 1 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 1072.5764 P49454 P49454 2656 2664 CENPF Centromere protein F yes yes 2 0.0051009 75.043 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6874700 0 6874700 6874700 0 6874700 0 0 0 10030 1581 10307 26582 41616 41616 1 NLTVILSDASAPGEGEHK RYYIADRLNNDPGWKNLTVILSDASAPGEG VILSDASAPGEGEHKIMDYIRRQRAQPNHD K N L H K I 2 0 1 1 0 0 2 2 1 1 2 1 0 0 1 2 1 0 0 1 0 0 18 0 1836.9218 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 114 131 XRN2 5-3 exoribonuclease 2 yes no 2 1.4895E-09 96.059 1 1 1.6925 1.4034 NaN 1 Median NaN NaN NaN 0 0 Median 1.6925 1.4034 NaN 1 0 Median 2294200 942640 1351600 0 0 0 2294200 942640 1351600 10031 903 10308 26583;26584 41617;41618;41619 41617 3 NLTVLDAIYEVSR QKYMDEGNDPKIFWKNLTVLDAIYEVSRAW WKNLTVLDAIYEVSRAWNMVKSSTITKAWK K N L S R A 1 1 1 1 0 0 1 0 0 1 2 0 0 0 0 1 1 0 1 2 0 0 13 0 1491.7933 V9HWD1;B3KNK0;Q4W5G0 V9HWD1 359 371 HEL106;TIGD2 Tigger transposable element-derived protein 2 yes no 2 0.003824 63.727 1 1 1.6309 1.3812 NaN 1 Median NaN NaN NaN 0 0 Median 1.6309 1.3812 NaN 1 0 Median 7087400 3865400 3222000 2408600 2408600 0 4678900 1456900 3222000 10032 914 10309 26585;26586 41620;41621 41620 2 NLTWTLSNLCR LAVPEMSSLACGYLRNLTWTLSNLCRNKNP GYLRNLTWTLSNLCRNKNPAPPIDAVEQIL R N L C R N 0 1 2 0 1 0 0 0 0 0 3 0 0 0 0 1 2 1 0 0 0 0 11 0 1376.6871 Q7Z726;A8K7D9;P52292 Q7Z726 228 238 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.00038966 82.287 2 1 0.81671 0.75861 50.793 2 Median 1.0501 1.0864 NaN 1 0 Median 0.63518 0.52971 NaN 1 0 Median 31277000 21001000 10276000 24616000 16978000 7638300 6660800 4023100 2637600 10033 769 10310 26587;26588;26589 41622;41623;41624;41625 41622 4 NLTYSAPLYVDITK DGAPSPMMPNEARLRNLTYSAPLYVDITKT RNLTYSAPLYVDITKTVIKEGEEQLQTQHQ R N L T K T 1 0 1 1 0 0 0 0 0 1 2 1 0 0 1 1 2 0 2 1 0 0 14 0 1596.8399 C9J2Y9;B4DHJ3;P30876;B4DR40;C9J4M6;B4DH29 C9J2Y9 110 123 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.00024168 65.5 2 1 1.2201 1.1157 20.956 2 Median 1.2916 1.2939 NaN 1 0 Median 1.1526 0.96206 NaN 1 0 Median 15570000 4418200 11152000 14034000 3538200 10495000 1536800 880010 656800 10034 975 10311 26590;26591;26592 41626;41627;41628;41629;41630 41626 5 NLVDNITGQR TETLEKVSITEAMHRNLVDNITGQRLLEAQ EAMHRNLVDNITGQRLLEAQACTGGIIDPS R N L Q R L 0 1 2 1 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1128.5887 Q15149;D3DWL0;Q96IE3 Q15149 4438 4447 PLEC;PLEC1 Plectin yes no 2 0.00019943 94.087 2 1.5857 1.785 3.6446 2 Median 1.5857 1.785 3.6446 2 0 Median NaN NaN NaN 0 0 Median 172160000 64035000 108130000 172160000 64035000 108130000 0 0 0 10035 1754 10312 26593;26594 41631;41632 41632 2 NLVDNVAK KDHYKLALGQINIAKNLVDNVAKDYVRLMK GQINIAKNLVDNVAKDYVRLMKYGDSLYRC K N L A K D 1 0 2 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 871.47633 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;O60747;Q5T3R7 Q8N4P8 102 109 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0084146 78.728 2 1.0921 1.231 0.69939 2 Median 1.0921 1.231 0.69939 2 0 Median NaN NaN NaN 0 0 Median 227160000 110480000 116680000 227160000 110480000 116680000 0 0 0 10036 1183 10313 26595;26596 41633;41634;41635;41636 41634 4 NLVDPFVEVSFAGK SQTVKEIFGGNADKKNLVDPFVEVSFAGKK KNLVDPFVEVSFAGKKVCTNIIEKNANPEW K N L G K K 1 0 1 1 0 0 1 1 0 0 1 1 0 2 1 1 0 0 0 3 0 0 14 0 1520.7875 Q9NZM1;O75923 Q9NZM1 393 406 MYOF;DYSF Myoferlin;Dysferlin yes no 2 0.041734 39.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2535000 0 2535000 2535000 0 2535000 0 0 0 10037 2088 10314 26597 41637 41637 1 NLVELSFLPGDTGKPDVLSASLEGQLTK GKLLTARVLRLNHQKNLVELSFLPGDTGKP KPDVLSASLEGQLTKQEERKTEAEERDQKG K N L T K Q 1 0 1 2 0 1 2 3 0 0 6 2 0 1 2 3 2 0 0 2 0 0 28 1 2927.5492 Q14690;B4DH82 Q14690 1389 1416 PDCD11 Protein RRP5 homolog yes no 3 2.2326E-27 100.06 2 1 1.3216 1.2433 7.1019 3 Plateau 1.094 1.2795 4.0551 2 0 Median 1.3358 1.1433 NaN 1 0 Median 194080000 85175000 108910000 95994000 45560000 50434000 98088000 39615000 58473000 10038 1741 10315 26598;26599;26600 41638;41639;41640;41641;41642 41642 5 NLVPGESVYGEK GVFICRGKEDALVTKNLVPGESVYGEKRVS VTKNLVPGESVYGEKRVSISEGDDKIEYRA K N L E K R 0 0 1 0 0 0 2 2 0 0 1 1 0 0 1 1 0 0 1 2 0 0 12 0 1290.6456 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 49 60 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 4.62E-05 98.943 5 2 0.8166 0.86846 6.1704 6 Median 0.77323 0.89443 4.8426 4 0 Median 0.95754 0.82113 0.50783 2 0 Median 1060800000 551910000 508930000 869060000 457740000 411320000 191770000 94166000 97606000 10039 1506 10316 26601;26602;26603;26604;26605;26606;26607 41643;41644;41645;41646;41647;41648;41649;41650;41651;41652;41653;41654;41655;41656;41657;41658;41659;41660;41661;41662 41644 20 NLVPLLLAPENLVEK GRLKDIDEDFKRELRNLVPLLLAPENLVEK NLVPLLLAPENLVEKEISGSKVTCRDLVEY R N L E K E 1 0 2 0 0 0 2 0 0 0 5 1 0 0 2 0 0 0 0 2 0 0 15 0 1660.9764 C9JQQ5;B7Z8V5;B7Z2H0;B5MCN0;Q8NHH9 C9JQQ5 144 158 ATL2 Atlastin-2 yes no 2 0.00022163 73.848 2 2.6147 2.6673 NaN 1 Median 2.6147 2.6673 NaN 1 0 Median NaN NaN NaN 0 0 Median 13385000 2151000 11234000 13385000 2151000 11234000 0 0 0 10040 1080 10317 26608;26609 41663;41664;41665 41665 3 NLVQCGDFPHLLVYGPSGAGK LGRLDYHKEQAAQLRNLVQCGDFPHLLVYG DFPHLLVYGPSGAGKKTRLMCILRELYGVG R N L G K K 1 0 1 1 1 1 0 4 1 0 3 1 0 1 2 1 0 0 1 2 0 0 21 0 2228.1048 B4DKE6;Q53HK8;A0A024RDQ8;P40938;Q5U0C2 B4DKE6 28 48 RFC3 Replication factor C subunit 3 yes no 3 2.2702E-08 70.453 2 2 0.91641 0.77857 22.517 4 Linear 0.88613 0.90605 1.9836 2 0 Median 0.77499 0.6248 11.654 2 0 Median 38081000 20663000 17417000 28176000 15380000 12796000 9904500 5282900 4621600 10041 391 10318 26610;26611;26612;26613 41666;41667;41668;41669;41670;41671;41672 41670 6 NLVTGIQLNPNNHLQLYSCSLDGTIK STVTEECVHILHGHRNLVTGIQLNPNNHLQ NHLQLYSCSLDGTIKLWDYIDGILIKTFIV R N L I K L 0 0 4 1 1 2 0 2 1 2 5 1 0 0 1 2 2 0 1 1 0 0 26 0 2911.4862 A8K330;Q8IWA0 A8K330 58 83 WDR75 WD repeat-containing protein 75 yes no 3 9.102E-10 54.658 1 2 1.0194 0.81774 10.015 3 Median 0.76 0.79766 NaN 1 0 Median 1.1231 0.88571 11.292 2 0 Median 52049000 29943000 22106000 19575000 12493000 7082600 32474000 17450000 15024000 10042 716 10319 26614;26615;26616 41673;41674;41675;41676;41677;41678 41673 6 NLWIFVSK LKEYTNPEQIKQWRKNLWIFVSKFTEFDAR QIKQWRKNLWIFVSKFTEFDARKLHKLYKH K N L S K F 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 1 0 1 0 0 8 0 1005.5648 O14646;B3KT33;A0A024RC75;O14647 O14646 1477 1484 CHD1;CHD2 Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 2 no no 2 0.015121 61.962 1 0.69515 0.71451 NaN 1 Median 0.69515 0.71451 NaN 1 0 Median NaN NaN NaN 0 0 Median 4920900 3069800 1851100 4920900 3069800 1851100 0 0 0 10043 1366;354 10320 26617 41679 41679 1 NLYAANGIGAVLAHK RALAIYKQVLRNDAKNLYAANGIGAVLAHK NLYAANGIGAVLAHKGYFREARDVFAQVRE K N L H K G 4 0 2 0 0 0 0 2 1 1 2 1 0 0 0 0 0 0 1 1 0 0 15 0 1510.8256 A8K6X9;Q6PD62 A8K6X9 646 660 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 0.0035691 49.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5695400 0 5695400 5695400 0 5695400 0 0 0 10044 765 10321 26618 41680 41680 1 NLYDFEVEYLCDYK RLAKLSCPALGISKRNLYDFEVEYLCDYKK RNLYDFEVEYLCDYKKIREQEYYLVKWRGY R N L Y K K 0 0 1 2 1 0 2 0 0 0 2 1 0 1 0 0 0 0 3 1 0 0 14 0 1869.8131 O43463 O43463 39 52 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2 8.7491E-05 87.363 1 0.64576 0.65587 NaN 1 Median 0.64576 0.65587 NaN 1 0 Median NaN NaN NaN 0 0 Median 6231600 3795600 2436100 6231600 3795600 2436100 0 0 0 10045 1385 10322 26619 41681 41681 1 NLYIISVK PVGAVINCADNTGAKNLYIISVKGIKGRLN ADNTGAKNLYIISVKGIKGRLNRLPAAGVG K N L V K G 0 0 1 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 1 1 0 0 8 0 948.56442 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;B9ZVP7;A4D142 Q9BTQ7 30 37 RPL23;LOC222901 60S ribosomal protein L23 yes no 1;2 0.0073768 83.206 3 2 0.8626 1.0087 27.267 5 Median 0.76352 0.90291 6.441 3 0 Median 1.7579 1.5229 7.267 2 0 Median 3377900000 1776200000 1601700000 3050300000 1660200000 1390000000 327610000 115990000 211620000 10046 84 10323 26620;26621;26622;26623;26624 41682;41683;41684;41685;41686;41687;41688;41689;41690;41691;41692;41693;41694;41695 41688 14 NMDAIIVDSEK TQKKYQIAVTKVLGKNMDAIIVDSEKTGRD VLGKNMDAIIVDSEKTGRDCIQYIKEQRGE K N M E K T 1 0 1 2 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 1 0 0 11 0 1233.5911 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709 Q14683 541 551 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0030122 59.542 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9814500 9814500 0 9814500 9814500 0 0 0 0 10047 1739 10324 26625 41696 41696 1573 1 NMDPLNDNIATLLHQSSDK YAGKVDYKADEWLMKNMDPLNDNIATLLHQ LNDNIATLLHQSSDKFVSELWKDVDRIIGL K N M D K F 1 0 3 3 0 1 0 0 1 1 3 1 1 0 1 2 1 0 0 0 0 0 19 0 2125.011 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 588 606 MYH9 Myosin-9 yes no 3 3.9896E-13 110.41 2 4 2.0376 2.3728 19.325 5 Linear 2.0254 2.3021 1.5708 2 0 Median 2.1098 1.7264 7.4703 3 0 Plateau 327100000 101630000 225470000 260630000 83015000 177610000 66476000 18614000 47862000 10048 81 10325;10326 26626;26627;26628;26629;26630;26631 41697;41698;41699;41700;41701;41702;41703;41704;41705;41706;41707 41700 68 11 NMGGPYGGGNYGPGGSGGSGGYGGR SNYGPMKSGNFGGSRNMGGPYGGGNYGPGG YGPGGSGGSGGYGGRSRY____________ R N M G R S 0 1 2 0 0 0 0 14 0 0 0 0 1 0 2 2 0 0 3 0 0 0 25 0 2188.8981 P22626;A0A024RA28 P22626 326 350 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 1.7411E-16 96.208 2 2.8876 3.2458 9.4539 2 Median 2.8876 3.2458 9.4539 2 0 Median NaN NaN NaN 0 0 Median 150240000 38239000 112000000 150240000 38239000 112000000 0 0 0 10049 1508 10327 26632;26633 41708;41709;41710;41711;41712 41709 1278 5 NMLQFNLQILPK MRFAQRNLRRDKDRRNMLQFNLQILPKSAK DRRNMLQFNLQILPKSAKQKERERIRLQKK R N M P K S 0 0 2 0 0 2 0 0 0 1 3 1 1 1 1 0 0 0 0 0 0 0 12 0 1457.8065 O15371;B4E1K8;B0QYA5;B0QYA6 O15371 113 124 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 9.2296E-05 76.827 2 2.9281 2.9375 4.9574 2 Median 2.9281 2.9375 4.9574 2 0 Median NaN NaN NaN 0 0 Median 12222000 3848700 8373300 12222000 3848700 8373300 0 0 0 10050 1378 10328 26634;26635 41713;41714 41714 1040 2 NMLTEELYGNTFQLYK IVEYAYNDKAILEQRNMLTEELYGNTFQLY MLTEELYGNTFQLYKSADHRTLDKVLEVQP R N M Y K S 0 0 2 0 0 1 2 1 0 0 3 1 1 1 0 0 2 0 2 0 0 0 16 0 1962.9397 Q15397;B2RDG4 Q15397 269 284 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.00016816 53.034 2 0.76205 0.77027 NaN 1 Median 0.76205 0.77027 NaN 1 0 Median NaN NaN NaN 0 0 Median 8669300 4052900 4616400 8669300 4052900 4616400 0 0 0 10051 1761 10329 26636;26637 41715;41716 41715 1629 2 NMQDLVEDFK DSIVGERGRLDSELRNMQDLVEDFKNKYED DSELRNMQDLVEDFKNKYEDEINKRTTAEN R N M F K N 0 0 1 2 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 10 0 1237.5649 CON__P13647;P13647;F8W0C6 CON__P13647 246 255 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.005622 68.016 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45853000 45853000 0 43751000 43751000 0 2101700 2101700 0 + 10052 1162 10330 26638;26639 41717;41718 41717 2 NMQDMVEDYR DQLKSDQSRLDSELKNMQDMVEDYRNKYED DSELKNMQDMVEDYRNKYEDEINKRTNAEN K N M Y R N 0 1 1 2 0 1 1 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 10 0 1299.5224 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 258 267 KRT1 Keratin, type II cytoskeletal 1 no no 2 3.1655E-22 143.89 7 9 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 298900000 298900000 0 252840000 252840000 0 46059000 46059000 0 + 10053 1308;1309 10331;10332;10333 26640;26641;26642;26643;26644;26645;26646;26647;26648;26649;26650;26651;26652;26653;26654;26655 41719;41720;41721;41722;41723;41724;41725;41726;41727;41728;41729;41730;41731;41732;41733;41734 41721 993;994 16 NMQEVVEDFK DGITAERGRLDAELRNMQEVVEDFKVRYED DAELRNMQEVVEDFKVRYEDEINKRAAAEN R N M F K V 0 0 1 1 0 1 2 0 0 0 0 1 1 1 0 0 0 0 0 2 0 0 10 0 1237.5649 CON__Q8BGZ7 CON__Q8BGZ7 228 237 yes yes 2 0.007933 50.04 2 0.7098 0.71423 NaN 1 Median 0.7098 0.71423 NaN 1 0 Median NaN NaN NaN 0 0 Median 27153000 15920000 11233000 27153000 15920000 11233000 0 0 0 + 10054 1180 10334 26656;26657 41735;41736 41736 891 2 NMSGSLYEMVSR NEEEVEKRFEGRLTKNMSGSLYEMVSRVMK LTKNMSGSLYEMVSRVMKALVNRKITVPGN K N M S R V 0 1 1 0 0 0 1 1 0 0 1 0 2 0 0 3 0 0 1 1 0 0 12 0 1372.6115 A0A024R4Z6;Q08945 A0A024R4Z6 305 316 SSRP1 FACT complex subunit SSRP1 yes no 2 1.9013E-12 127.42 4 1.9756 2.082 2.2008 2 Median 1.9756 2.082 2.2008 2 0 Median NaN NaN NaN 0 0 Median 63552000 27138000 36414000 63552000 27138000 36414000 0 0 0 10055 167 10335 26658;26659;26660;26661 41737;41738;41739;41740;41741;41742 41741 137;138 6 NMSVHLSPCFR LHYIRKYNRFEKRHKNMSVHLSPCFRDVQI KRHKNMSVHLSPCFRDVQIGDIVTVGECRP K N M F R D 0 1 1 0 1 0 0 0 1 0 1 0 1 1 1 2 0 0 0 1 0 0 11 0 1346.6224 P62280;M0QZC5;M0R1H5 P62280 108 118 RPS11 40S ribosomal protein S11 yes no 2;3 1.2667E-05 102.52 4 6 1.1465 0.95517 30.328 9 Median 1.2438 1.4171 3.4388 4 0 Median 1.1187 0.91608 18.615 5 0 Median 501710000 231060000 270650000 449940000 205200000 244740000 51764000 25853000 25911000 10056 1641 10336;10337 26662;26663;26664;26665;26666;26667;26668;26669;26670;26671 41743;41744;41745;41746;41747;41748;41749;41750;41751;41752;41753;41754;41755;41756;41757 41743 1420 15 NMSVIAHVDHGK VDQIRAIMDKKANIRNMSVIAHVDHGKSTL NIRNMSVIAHVDHGKSTLTDSLVCKAGIIA R N M G K S 1 0 1 1 0 0 0 1 2 1 0 1 1 0 0 1 0 0 0 2 0 0 12 0 1306.6452 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 21 32 EEF2 Elongation factor 2 yes no 3 4.7435E-05 76.165 1 4.5026 5.0809 NaN 1 Median 4.5026 5.0809 NaN 1 0 Median NaN NaN NaN 0 0 Median 64180000 12103000 52076000 64180000 12103000 52076000 0 0 0 10057 1478 10338 26672 41758 41758 1230 1 NMTPSPFLR QIQYKNPWVQIMMFKNMTPSPFLRFYLDSG QIMMFKNMTPSPFLRFYLDSGEQVLVDVET K N M L R F 0 1 1 0 0 0 0 0 0 0 1 0 1 1 2 1 1 0 0 0 0 0 9 0 1061.5328 P82663;E7EPW2 P82663 69 77 MRPS25 28S ribosomal protein S25, mitochondrial yes no 2 0.0063431 58.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4733500 0 4733500 4733500 0 4733500 0 0 0 10058 1667 10339 26673 41759;41760 41760 1470 2 NMVHPNVICDGCNGPVVGTR CRRDHRPPCAQEAPRNMVHPNVICDGCNGP NVICDGCNGPVVGTRYKCSVCPDYDLCSVC R N M T R Y 0 1 3 1 2 0 0 3 1 1 0 0 1 0 2 0 1 0 0 4 0 0 20 0 2195.0034 Q13501;E7EMC7;E9PFW8;E3WH17;Q13502;C9JRJ8;E3W990;B4DE82 Q13501 120 139 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 3 3.0854E-07 76.301 2 2.073 2.0756 3.2333 2 Median 2.073 2.0756 3.2333 2 0 Median NaN NaN NaN 0 0 Median 32118000 7361500 24756000 32118000 7361500 24756000 0 0 0 10059 1714 10340 26674;26675 41761;41762;41763;41764 41761 1543 4 NMYPPPSFPTNK RHGQTRDRVHDRNVKNMYPPPSFPTNKAAT NVKNMYPPPSFPTNKAATVKSAGATPAEPE K N M N K A 0 0 2 0 0 0 0 0 0 0 0 1 1 1 4 1 1 0 1 0 0 0 12 0 1391.6544 Q7Z3K3;B4DSK8;H0YCT3 Q7Z3K3 872 883 POGZ Pogo transposable element with ZNF domain yes no 2 0.006346 51.092 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2172000 0 2172000 2172000 0 2172000 0 0 0 10060 1874 10341 26676 41765 41765 1725 1 NNALVPGTIQVNGHGGQPSK TLSKSSAVIEQGDCKNNALVPGTIQVNGHG PGTIQVNGHGGQPSKLVKRGPGRKPKVEVN K N N S K L 1 0 3 0 0 2 0 4 1 1 1 1 0 0 2 1 1 0 0 2 0 0 20 0 1987.0235 Q8WWQ0;Q9NWP3 Q8WWQ0 1614 1633 PHIP PH-interacting protein yes no 2;3 6.1731E-07 70.216 3 2 1.3603 1.2311 19.444 4 Median 0.97755 1.0266 5.0311 2 0 Median 1.824 1.4321 0.73276 2 0 Median 40466000 19375000 21091000 31888000 16097000 15792000 8578000 3278500 5299500 10061 1942 10342 26677;26678;26679;26680;26681 41766;41767;41768;41769;41770;41771;41772;41773 41767 7 NNASTDYDLSDK KIGQGYLIKDGKLIKNNASTDYDLSDKSIN LIKNNASTDYDLSDKSINPLGGFVHYGEVT K N N D K S 1 0 2 3 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 12 0 1341.5685 P39023;Q8TBW1;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;B5MCW2;B3KS36 P39023 301 312 RPL3;rpl3 60S ribosomal protein L3 no no 2 4.9568E-23 159.83 3 2 1.0227 1.1649 12.086 4 Linear 0.9659 1.1375 1.5059 2 0 Median 1.075 0.92361 1.4305 2 0 Median 983910000 490960000 492950000 770180000 389540000 380640000 213730000 101420000 112310000 10062 1554;936 10343 26682;26683;26684;26685;26686 41774;41775;41776;41777;41778;41779;41780;41781;41782;41783;41784;41785;41786;41787 41775 14 NNAYLAQSPQLYK ASEGGANVFTVSYFKNNAYLAQSPQLYKQM FKNNAYLAQSPQLYKQMCICADFEKVFSIG K N N Y K Q 2 0 2 0 0 2 0 0 0 0 2 1 0 0 1 1 0 0 2 0 0 0 13 0 1508.7623 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 209 221 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 3.6292E-09 121.6 2 1.1124 1.1322 NaN 1 Median 1.1124 1.1322 NaN 1 0 Median NaN NaN NaN 0 0 Median 25259000 6694200 18565000 25259000 6694200 18565000 0 0 0 10063 610 10344 26687;26688 41788;41789;41790 41789 3 NNDLCYWVPELVR SWFVRVENMVDQLLRNNDLCYWVPELVREK LRNNDLCYWVPELVREKRFGNWLKDARDWT R N N V R E 0 1 2 1 1 0 1 0 0 0 2 0 0 0 1 0 0 1 1 2 0 0 13 0 1676.7981 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4 Q59G75 446 458 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0032908 50.284 1 1.5987 1.6595 NaN 1 Median 1.5987 1.6595 NaN 1 0 Median NaN NaN NaN 0 0 Median 5622900 2832500 2790400 5622900 2832500 2790400 0 0 0 10064 1561 10345 26689 41791 41791 1 NNDLLFR YAGEVTYSVTGFLDKNNDLLFRNLKETMCS SVTGFLDKNNDLLFRNLKETMCSSKNPIMS K N N F R N 0 1 2 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 890.46102 F5H6E2;B7Z3E5;O00159;B7Z9C0;A1L180;D3DTH7 F5H6E2 538 544 MYO1C Unconventional myosin-Ic no no 2 0.045068 60.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7130200 7130200 0 7130200 7130200 0 0 0 0 10065 1088;1189 10346 26690 41792 41792 1 NNDLQDNYLSEQNK HFESLEEELKKMKSKNNDLQDNYLSEQNKN KNNDLQDNYLSEQNKNKLLASQLEEIKLQI K N N N K N 0 0 4 2 0 2 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 14 0 1693.7544 A0A024RAC0;Q86V48 A0A024RAC0 319 332 LUZP1 Leucine zipper protein 1 yes no 2 0.00044101 83.397 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10066 300 10347 26691 41793 41793 1 NNEDISIIPPLFTVSVDHR FFDEESYSLLRKAQRNNEDISIIPPLFTVS ISIIPPLFTVSVDHRGTWNGPWVSTEVLAA R N N H R G 0 1 2 2 0 0 1 0 1 3 1 0 0 1 2 2 1 0 0 2 0 0 19 0 2165.1117 A6NLM8;P51571 A6NLM8 96 114 SSR4 Translocon-associated protein subunit delta yes no 3 8.3216E-05 44.788 2 0.68491 0.69159 NaN 1 Median 0.68491 0.69159 NaN 1 0 Median NaN NaN NaN 0 0 Median 16293000 11266000 5026700 16293000 11266000 5026700 0 0 0 10067 688 10348 26692;26693 41794;41795 41794 2 NNEELVVSASCK PETELSLRVGKDQRRNNEELVVSASCKEPE QRRNNEELVVSASCKEPEQEPVPAQFQKVK R N N C K E 1 0 2 0 1 0 2 0 0 0 1 1 0 0 0 2 0 0 0 2 0 0 12 0 1348.6293 G3XAG1;Q96ME7;B4DES6;B7Z9P6;Q658M0 G3XAG1 529 540 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2 1.1353E-10 118.28 1 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7369700 7369700 0 5744800 5744800 0 1624900 1624900 0 10068 1275 10349 26694;26695;26696;26697 41796;41797;41798;41799 41796 4 NNELIAVGK GKELGFDASEVELTRNNELIAVGKGSSLKR EVELTRNNELIAVGKGSSLKRLPVFGMEPR R N N G K G 1 0 2 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 956.5291 B4DI61;Q6FI18;O00622;Q53FA4;Q9UID7 B4DI61 171 179 CYR61 Protein CYR61 yes no 2 0.001665 82.452 1 2 2.0631 2.2584 28.53 3 Plateau 2.0631 2.2612 NaN 1 0 Median 1.7127 1.3822 3.5682 2 0 Median 64217000 24237000 39980000 52670000 20066000 32604000 11548000 4171000 7376700 10069 979 10350 26698;26699;26700 41800;41801;41802;41803;41804;41805;41806 41800 7 NNFAVGYR GYQMTFDSAKSKLTRNNFAVGYRTGDFQLH AKSKLTRNNFAVGYRTGDFQLHTNVNDGTE R N N Y R T 1 1 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 8 0 939.45626 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;B4DKM5;Q5JSD2;Q5JSD1 A0A0A0MR02 178 185 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 1.6499E-05 143.37 2 2 2.4643 2.4277 2.567 4 Median 2.0676 2.4287 2.9295 2 0 Median 2.9543 2.42 3.3254 2 0 Median 860050000 257010000 603040000 832580000 250110000 582480000 27469000 6903500 20566000 10070 28 10351 26701;26702;26703;26704 41807;41808;41809;41810;41811;41812;41813 41810 7 NNFSDTGNFGFGIQEHIDLGIK ILEKGLKVREYELRKNNFSDTGNFGFGIQE NFGFGIQEHIDLGIKYDPSIGIYGLDFYVV K N N I K Y 0 0 3 2 0 1 1 4 1 3 1 1 0 3 0 1 1 0 0 0 0 0 22 0 2422.1553 Q08ES8;Q5VVD0;P62913;Q5VVC8;Q5VVC9 Q08ES8 96 117 RPL11 60S ribosomal protein L11 yes no 3 7.6076E-30 134.29 10 2 0.96618 0.90445 36.22 9 Median 0.91439 0.90304 41.494 7 0 Median 1.128 0.92391 3.0107 2 0 Median 166060000 83284000 82773000 104280000 53112000 51168000 61776000 30172000 31605000 10071 1652 10352 26705;26706;26707;26708;26709;26710;26711;26712;26713;26714;26715;26716 41814;41815;41816;41817;41818;41819;41820;41821;41822;41823;41824;41825;41826;41827;41828;41829;41830;41831 41829 18 NNICSQPDLHAIGLSIIPAR HKVHLLCLLANGFYRNNICSQPDLHAIGLS QPDLHAIGLSIIPARFTRVLPRDVDTYYLS R N N A R F 2 1 2 1 1 1 0 1 1 4 2 0 0 0 2 2 0 0 0 0 0 0 20 0 2188.1423 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPI9;D2CPJ0 A0A024R2M8 221 240 XPC DNA repair protein complementing XP-C cells yes no 3 1.6135E-42 132.59 2 2 0.64569 0.59308 28.204 4 Median 0.45666 0.46732 4.7289 2 0 Median 0.91006 0.75745 5.6231 2 0 Median 73604000 45340000 28264000 39677000 27077000 12600000 33927000 18263000 15664000 10072 118 10353 26717;26718;26719;26720 41832;41833;41834;41835;41836;41837;41838;41839;41840 41838 9 NNIPYFETSAK RQVATKRAQAWCYSKNNIPYFETSAKEAIN CYSKNNIPYFETSAKEAINVEQAFQTIARN K N N A K E 1 0 2 0 0 0 1 0 0 1 0 1 0 1 1 1 1 0 1 0 0 0 11 0 1282.6194 A0A158RFU6;P51149;C9J8S3;B4DPH9;C9IZZ0;C9J4V0 A0A158RFU6 147 157 RAB7A Ras-related protein Rab-7a yes no 2 0.0014838 77.677 1 1.6127 1.6433 NaN 1 Median 1.6127 1.6433 NaN 1 0 Median NaN NaN NaN 0 0 Median 26023000 10777000 15246000 26023000 10777000 15246000 0 0 0 10073 628 10354 26721 41841;41842 41842 2 NNLIYQVDTLK YKKAMVSNAQLDNEKNNLIYQVDTLKDVIE DNEKNNLIYQVDTLKDVIEEQEEQMAEFYR K N N L K D 0 0 2 1 0 1 0 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 11 0 1319.7085 C9JSU1;A0A1S5UZ17;A0A024R2K4;Q9Y608;H7C3N9 C9JSU1 162 172 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 2 0.0019892 63.283 2 1.0742 1.0907 NaN 1 Median 1.0742 1.0907 NaN 1 0 Median NaN NaN NaN 0 0 Median 6169200 3318000 2851200 6169200 3318000 2851200 0 0 0 10074 114 10355 26722;26723 41843;41844 41843 2 NNMFEISDR YEQTKNAQFIIISLRNNMFEISDRLIGIYK IIISLRNNMFEISDRLIGIYKTYNITKSVA R N N D R L 0 1 2 1 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 9 0 1124.4921 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1253 1261 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00050975 90.657 3 4 1.2919 1.4837 19.53 7 Median 1.1939 1.3053 8.2416 3 0 Median 1.8832 1.5887 26.513 4 0 Median 239410000 107720000 131690000 221470000 100580000 120880000 17946000 7137700 10808000 10075 2070 10356;10357 26724;26725;26726;26727;26728;26729;26730 41845;41846;41847;41848;41849;41850;41851;41852;41853;41854;41855;41856 41850 1906 12 NNNPLYSR PLLPMALVAPDEMEKNNNPLYSRQGEVLAS APDEMEKNNNPLYSRQGEVLASRKDFRMNT K N N S R Q 0 1 3 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 8 0 976.47264 A0A0A6YYG7;Q6IBW4;E5RJN3 A0A0A6YYG7 161 168 NCAPH2 Condensin-2 complex subunit H2 yes no 2 0.0057749 87.181 1 1 1.2433 1.0712 NaN 1 Median NaN NaN NaN 0 0 Median 1.2433 1.0712 NaN 1 0 Median 18252000 1772400 16480000 13848000 0 13848000 4404600 1772400 2632200 10076 491 10358 26731;26732 41857;41858 41857 2 NNPPTLVGDFTK NSDMHPMRVLFLIPKNNPPTLVGDFTKSFK IPKNNPPTLVGDFTKSFKEFIDACLNKDPS K N N T K S 0 0 2 1 0 0 0 1 0 0 1 1 0 1 2 0 2 0 0 1 0 0 12 0 1301.6616 Q8NBY1;B4E0Y9;Q9P289;Q9NWX4;Q96SR7 Q8NBY1 234 245 STK26 Serine/threonine-protein kinase 26 yes no 2 0.00072344 66.758 2 2.2246 2.2533 7.8465 2 Median 2.2246 2.2533 7.8465 2 0 Median NaN NaN NaN 0 0 Median 58768000 18964000 39804000 58768000 18964000 39804000 0 0 0 10077 1065 10359 26733;26734 41859;41860;41861;41862 41862 4 NNQFQALLQYADPVSAQHAK FSKFGTVLKIITFTKNNQFQALLQYADPVS ALLQYADPVSAQHAKLSLDGQNIYNACCTL K N N A K L 4 0 2 1 0 4 0 0 1 0 2 1 0 1 1 1 0 0 1 1 0 0 20 0 2242.1131 A6NLN1;A0A0U1RRM4;P26599;K7EK45;A0A087WU68;Q59H49;K7EKJ7 A6NLN1 189 208 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3 7.3559E-07 67.396 1 2 1.9412 1.9763 36.62 3 Plateau 1.9412 1.9763 NaN 1 0 Median 1.303 1.0549 7.4023 2 0 Median 45727000 17154000 28573000 26102000 9248000 16854000 19625000 7906300 11718000 10078 592 10360 26735;26736;26737 41863;41864;41865;41866;41867 41863 5 NNQGTVNWSVDDIVK SSFPDDATSPLQENRNNQGTVNWSVDDIVK NNQGTVNWSVDDIVKGINSSNVENQLQATQ R N N V K G 0 0 3 2 0 1 0 1 0 1 0 1 0 0 0 1 1 1 0 3 0 0 15 0 1687.8166 Q7Z726;A8K7D9;P52292;J3QLL0;J3KS65 Q7Z726 69 83 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 3.5887E-07 101.39 1 1 0.97142 0.76513 NaN 1 Median NaN NaN NaN 0 0 Median 0.97142 0.76513 NaN 1 0 Median 25176000 5539700 19636000 14210000 0 14210000 10966000 5539700 5426400 10079 769 10361 26738;26739 41868;41869;41870;41871;41872 41870 5 NNSELLNNLGNFINR EGQDSAFSWTDLLLKNNSELLNNLGNFINR NNSELLNNLGNFINRAGMFVSKFFGGYVPE K N N N R A 0 1 6 0 0 0 1 1 0 1 3 0 0 1 0 1 0 0 0 0 0 0 15 0 1730.87 A8K492;P56192;B4DF61 A8K492 642 656 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 1.3026E-30 157.38 2 2 2.0814 3.8501 53.917 4 Linear 3.0178 3.1323 5.689 2 0 Median 1.4601 1.2334 1.3724 2 0 Median 53981000 17540000 36441000 38169000 11608000 26561000 15812000 5931500 9880700 10080 732 10362 26740;26741;26742;26743 41873;41874;41875;41876;41877 41873 5 NNSGEEFDCAFR EKMKVINTGIKVWCRNNSGEEFDCAFRLAQ WCRNNSGEEFDCAFRLAQEGIYTLYPFINS R N N F R L 1 1 2 1 1 0 2 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 12 0 1444.5677 Q08J23 Q08J23 591 602 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 1.6602E-08 121.6 2 2 1.4424 1.5953 55.131 4 Linear 1.3245 1.421 11.838 2 0 Median 0.6499 0.55094 0.15707 2 0 Median 75814000 32424000 43390000 68768000 28253000 40516000 7045700 4171200 2874600 10081 1694 10363 26744;26745;26746;26747 41878;41879;41880;41881;41882 41880 5 NNSVILADEMGLGK YQLEGLNWLAHSWCKNNSVILADEMGLGKT KNNSVILADEMGLGKTIQTISFLSYLFHQH K N N G K T 1 0 2 1 0 0 1 2 0 1 2 1 1 0 0 1 0 0 0 1 0 0 14 0 1459.7341 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 502 515 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 3.9529E-07 103.43 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10082 354 10364 26748;26749 41883;41884 41883 266 2 NNTQVLINCR EFNTGPLSVLTQSVKNNTQVLINCRNNKKL TQSVKNNTQVLINCRNNKKLLGRVKAFDRH K N N C R N 0 1 3 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1230.6139 P62316;K7ERG4 P62316 38 47 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 1.1124E-09 133.23 2 2 0.90098 0.87624 31.004 4 Median 1.0513 1.1234 0.9171 2 0 Median 0.76499 0.65894 6.0838 2 0 Median 58626000 30172000 28453000 53193000 27194000 25999000 5432900 2978800 2454100 10083 1645 10365 26750;26751;26752;26753 41885;41886;41887;41888 41886 4 NNTVGLIQLNRPK SGANFEYIIAEKRGKNNTVGLIQLNRPKAL GKNNTVGLIQLNRPKALNALCDGLIDELNQ K N N P K A 0 1 3 0 0 1 0 1 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 1 1465.8365 P30084 P30084 44 56 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2 0.016304 60.064 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10084 1533 10366 26754 41889 41889 1 NNVNVASLTQSEIR EVQLKDLILADYGKKNNVNVASLTQSEIRD KNNVNVASLTQSEIRDIILGMEISAPSQQR K N N I R D 1 1 3 0 0 1 1 0 0 1 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1543.7954 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 1995 2008 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 1.5063E-29 153.95 1 2 0.9257 0.95894 11.66 3 Plateau 0.90632 0.95894 NaN 1 0 Median 0.92883 0.78594 2.8384 2 0 Median 55826000 30166000 25660000 41002000 22471000 18531000 14823000 7694300 7129000 10085 1854 10367 26755;26756;26757 41890;41891;41892;41893;41894;41895 41891 6 NNVSSVSTTGTATDLESSAK LRIMSPMRTGNTYSRNNVSSVSTTGTATDL VSTTGTATDLESSAKVVDHVLGPLNSSTSL R N N A K V 2 0 2 1 0 0 1 1 0 0 1 1 0 0 0 5 4 0 0 2 0 0 20 0 1967.9284 Q03164 Q03164 2222 2241 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 8.6505E-10 98.943 2 2 1.3929 1.2905 38.315 4 Median 0.90517 0.91939 7.3653 2 0 Median 2.1988 1.7753 4.5096 2 0 Median 61413000 31808000 29605000 44572000 25917000 18655000 16840000 5890500 10950000 10086 1680 10368 26758;26759;26760;26761 41896;41897;41898;41899;41900;41901;41902;41903;41904;41905 41900 10 NNVVINYK RLIVDHNIADYMTAKNNVVINYKDMNHTNS ADYMTAKNNVVINYKDMNHTNSYGIIRGLQ K N N Y K D 0 0 3 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 2 0 0 8 0 962.51853 Q6P2Q9;I3L0J9 Q6P2Q9 1013 1020 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0043182 94.006 2 0.91279 0.98233 5.4693 2 Median 0.91279 0.98233 5.4693 2 0 Median NaN NaN NaN 0 0 Median 74028000 39553000 34475000 74028000 39553000 34475000 0 0 0 10087 1854 10369 26762;26763 41906;41907;41908;41909 41909 4 NNWEVSALSR LDGYLKTSALSDETKNNWEVSALSRAAQKG SDETKNNWEVSALSRAAQKGFNKVVLKHLK K N N S R A 1 1 2 0 0 0 1 0 0 0 1 0 0 0 0 2 0 1 0 1 0 0 10 0 1174.5731 P78527;B4DL41 P78527 811 820 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0005036 85.807 2 1 0.53963 0.53744 3.3369 3 Plateau 0.53283 0.53517 1.8647 2 0 Median 0.59388 0.5075 NaN 1 0 Median 39781000 24224000 15557000 35266000 21559000 13708000 4514800 2665400 1849400 10088 1665 10370 26764;26765;26766 41910;41911;41912;41913 41912 4 NPASLPLTQAALK DGKKQEGPATQVSKKNPASLPLTQAALKVL KKNPASLPLTQAALKVLAQKASEAQPPVAR K N P L K V 3 0 1 0 0 1 0 0 0 0 3 1 0 0 2 1 1 0 0 0 0 0 13 0 1322.7558 Q13428;Q59FZ2 Q13428 1066 1078 TCOF1 Treacle protein yes no 2 0.028701 33.87 1 1.313 1.1543 NaN 1 Median NaN NaN NaN 0 0 Median 1.313 1.1543 NaN 1 0 Median 1256300 511770 744510 0 0 0 1256300 511770 744510 10089 1712 10371 26767 41914 41914 1 NPDDITNEEYGEFYK IDQEELNKTKPIWTRNPDDITNEEYGEFYK NPDDITNEEYGEFYKSLTNDWEDHLAVKHF R N P Y K S 0 0 2 2 0 0 3 1 0 1 0 1 0 1 1 0 1 0 2 0 0 0 15 0 1832.7741 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322 K9JA46 300 314 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2 6.7285E-16 136.38 2 1 3.1764 3.416 45.045 3 Plateau 3.1653 3.3465 2.9056 2 0 Median 1.9276 1.535 NaN 1 0 Median 73914000 20355000 53558000 67184000 17820000 49364000 6730000 2535500 4194500 10090 1348 10372 26768;26769;26770 41915;41916;41917;41918;41919;41920;41921 41916 7 NPDDITQEEYGEFYK IDQEELNKTKPIWTRNPDDITQEEYGEFYK NPDDITQEEYGEFYKSLTNDWEDHLAVKHF R N P Y K S 0 0 1 2 0 1 3 1 0 1 0 1 0 1 1 0 1 0 2 0 0 0 15 0 1846.7897 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50 B4DMA2 254 268 HSP90AB1 Heat shock protein HSP 90-beta yes no 2 3.4392E-84 215.53 2 2 2.2919 2.6519 42.321 4 Linear 2.2777 2.6235 2.1699 2 0 Median 1.5235 1.261 1.279 2 0 Median 477550000 154600000 322960000 398290000 121320000 276960000 79269000 33275000 45994000 10091 379 10373 26771;26772;26773;26774 41922;41923;41924;41925;41926;41927;41928;41929;41930;41931;41932 41923 11 NPDEFYYK KQEYLKALRKKALEKNPDEFYYKMTRVKLQ RKKALEKNPDEFYYKMTRVKLQDGVHIIKE K N P Y K M 0 0 1 1 0 0 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 0 8 0 1074.4658 Q9Y3A2 Q9Y3A2 62 69 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.013237 65.777 2 0.99632 1.0937 0.039415 2 Median 0.99632 1.0937 0.039415 2 0 Median NaN NaN NaN 0 0 Median 90025000 43299000 46726000 90025000 43299000 46726000 0 0 0 10092 2132 10374 26775;26776 41933;41934;41935 41935 3 NPDGEPRPWCFTTDPQK PSKFPNKNLKMNYCRNPDGEPRPWCFTTDP DGEPRPWCFTTDPQKRWEFCDIPRCTTPPP R N P Q K R 0 1 1 2 1 1 1 1 0 0 0 1 0 1 4 0 2 1 0 0 0 0 17 1 2043.9109 CON__P06868 CON__P06868 243 259 yes yes 3 0.042832 25.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6751900 6751900 0 0 0 0 6751900 6751900 0 + 10093 1157 10375 26777 41936 41936 1 NPDNDENGPWCYTTDPDK PEKFPLAGLEENYCRNPDNDENGPWCYTTD NDENGPWCYTTDPDKRYDYCDIPECEDKCM R N P D K R 0 0 3 4 1 0 1 1 0 0 0 1 0 0 3 0 2 1 1 0 0 0 18 0 2136.8331 CON__P06868 CON__P06868 161 178 yes yes 2 0.0095771 41.621 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8220400 8220400 0 8220400 8220400 0 0 0 0 + 10094 1157 10376 26778;26779 41937;41938 41937 2 NPDQVYLVDYGLAYR VHGDIKASNLLLNYKNPDQVYLVDYGLAYR NPDQVYLVDYGLAYRYCPEGVHKEYKEDPK K N P Y R Y 1 1 1 2 0 1 0 1 0 0 2 0 0 0 1 0 0 0 3 2 0 0 15 0 1784.8733 A8K245;Q99986;H0YJ50 A8K245 189 203 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 1.8852E-16 129.34 1 2 0.96413 0.80467 0.18503 2 Median NaN NaN NaN 0 0 Median 0.96413 0.80467 0.18503 2 0 Median 52774000 19169000 33605000 16728000 0 16728000 36045000 19169000 16876000 10095 707 10377 26780;26781;26782 41939;41940;41941;41942;41943 41939 5 NPDSITNQIALLEAR EEISVLSPEDLEAIKNPDSITNQIALLEAR NPDSITNQIALLEARCHEMKPNLGAIAEYK K N P A R C 2 1 2 1 0 1 1 0 0 2 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1653.8686 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1068 1082 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.1471E-115 245.15 2 2 1.1691 1.1823 25.734 4 Median 0.81277 0.95044 1.7076 2 0 Median 1.7032 1.4824 2.835 2 0 Median 936660000 444110000 492550000 554830000 298530000 256310000 381820000 145580000 236240000 10096 2070 10378 26783;26784;26785;26786 41944;41945;41946;41947;41948;41949;41950;41951;41952 41952 9 NPDSQYGELIEK YTHLSAGELLRDERKNPDSQYGELIEKYIK ERKNPDSQYGELIEKYIKEGKIVPVEITIS K N P E K Y 0 0 1 1 0 1 2 1 0 1 1 1 0 0 1 1 0 0 1 0 0 0 12 0 1391.6569 Q5T0D2;B4DDL4;B2R6S5;P30085;B4DFW6 Q5T0D2 76 87 CMPK1;CMPK UMP-CMP kinase yes no 2 3.9941E-28 143.96 2 2 2.2876 1.8423 12.009 2 Median NaN NaN NaN 0 0 Median 2.2876 1.8423 12.009 2 0 Median 35376000 10079000 25297000 29530000 8329100 21200000 5846000 1749600 4096500 10097 844 10379 26787;26788;26789;26790 41953;41954;41955;41956;41957 41953 5 NPDTQWITK FEVILIDPFHKAIRRNPDTQWITKPVHKHR HKAIRRNPDTQWITKPVHKHREMRGLTSAG R N P T K P 0 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 9 0 1101.5455 A0A024R2Q4;P61313;E7EQV9;E7ENU7 A0A024R2Q4 145 153 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 3.6009E-10 150.53 2 2 0.74839 0.81061 12.006 4 Linear 0.68446 0.80179 4.015 2 0 Median 0.81728 0.65559 3.3252 2 0 Median 663690000 395150000 268550000 625310000 373260000 252050000 38384000 21884000 16500000 10098 121 10380 26791;26792;26793;26794 41958;41959;41960;41961;41962;41963;41964;41965;41966 41958 9 NPELPNAAQAQK EILFYRKTIGYKVPRNPELPNAAQAQKEEQ VPRNPELPNAAQAQKEEQLKIDEAESLNDE R N P Q K E 3 0 2 0 0 2 1 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 12 0 1279.6521 O60264;B7ZAX9;B4DZC0 O60264 803 814 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.0929E-29 172.59 2 2 3.685 3.6158 23.737 4 Median 2.5578 2.9349 1.3181 2 0 Median 5.3001 4.4264 0.41769 2 0 Median 475180000 119470000 355700000 381400000 105060000 276340000 93776000 14417000 79359000 10099 1391 10381 26795;26796;26797;26798 41967;41968;41969;41970;41971;41972;41973;41974 41973 8 NPELSTQLIDIIHTAAAR WLAGLPLQLAHLGSRNPELSTQLIDIIHTA LSTQLIDIIHTAAARANKELLKSLQATALR R N P A R A 3 1 1 1 0 1 1 0 1 3 2 0 0 0 1 1 2 0 0 0 0 0 18 0 1962.0534 A0A024R169;Q9NXF1;B4DQR0 A0A024R169 566 583 TEX10 Testis-expressed sequence 10 protein yes no 3 1.4739E-05 58.693 1 1.0993 1.1 NaN 1 Median 1.0993 1.1 NaN 1 0 Median NaN NaN NaN 0 0 Median 6875800 3669900 3205900 6875800 3669900 3205900 0 0 0 10100 72 10382 26799 41975 41975 1 NPEQVDLYQFMAK SITANYTDQWERWWKNPEQVDLYQFMAKDN WKNPEQVDLYQFMAKDNVPFHSLVFPCSAL K N P A K D 1 0 1 1 0 2 1 0 0 0 1 1 1 1 1 0 0 0 1 1 0 0 13 0 1581.7497 A8K492;P56192;B4DF61 A8K492 542 554 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 6.9492E-14 131.82 2 2.8723 2.956 29.134 2 Median 2.8723 2.956 29.134 2 0 Median NaN NaN NaN 0 0 Median 41851000 14461000 27390000 41851000 14461000 27390000 0 0 0 10101 732 10383 26800;26801 41976;41977 41977 568 2 NPESPFMFSLHLNEAR YGEKLQFIFTNIDPKNPESPFMFSLHLNEA PESPFMFSLHLNEARDYEVSDSAPHLEGLA K N P A R D 1 1 2 0 0 0 2 0 1 0 2 0 1 2 2 2 0 0 0 0 0 0 16 0 1887.8938 Q9HBM1 Q9HBM1 165 180 SPC25 Kinetochore protein Spc25 yes yes 3 3.9363E-05 72.433 1 1.0553 1.0598 NaN 1 Median 1.0553 1.0598 NaN 1 0 Median NaN NaN NaN 0 0 Median 11182000 5462200 5719500 11182000 5462200 5719500 0 0 0 10102 2050 10384 26802 41978 41978 1884 1 NPFDTFFGQR HGDPHAMFAEFFGGRNPFDTFFGQRNGEEG FFGGRNPFDTFFGQRNGEEGMDIDDPFSGF R N P Q R N 0 1 1 1 0 1 0 1 0 0 0 0 0 3 1 0 1 0 0 0 0 0 10 0 1227.5673 Q6FI51;Q6FHS4;P25685;M0R080;M0QYT3;M0QXK0;M0R128;A0A1B0GX60;M0R1D6;M0QZD0 Q6FI51 110 119 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 0.019834 46.891 1 1.588 1.6243 NaN 1 Median 1.588 1.6243 NaN 1 0 Median NaN NaN NaN 0 0 Median 6660000 2463800 4196200 6660000 2463800 4196200 0 0 0 10103 1517 10385 26803 41979;41980 41979 2 NPFGNAGLLLGEAGK MDKGKELSGLGSALKNPFGNAGLLLGEAGK NPFGNAGLLLGEAGKQLRRRAGLGSGLSLS K N P G K Q 2 0 2 0 0 0 1 4 0 0 3 1 0 1 1 0 0 0 0 0 0 0 15 0 1456.7674 Q53HR2;B4DEA8;P49748;B3KPA6;G3V1M7 Q53HR2 493 507 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 4.9248E-07 102.62 2 2 1.0879 1.146 48.856 4 Linear 0.96342 0.97848 26.749 2 0 Median 0.54727 0.43986 7.2526 2 0 Median 68278000 35310000 32967000 55784000 27437000 28346000 12494000 7873100 4621000 10104 965 10386 26804;26805;26806;26807 41981;41982;41983;41984;41985;41986 41982 6 NPIMSQCFDR DLLFRNLKETMCSSKNPIMSQCFDRSELSD MCSSKNPIMSQCFDRSELSDKKRPETVATQ K N P D R S 0 1 1 1 1 1 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 10 0 1266.5485 F5H6E2;B7Z3E5;O00159;B7Z9C0;A1L180;D3DTH7 F5H6E2 555 564 MYO1C Unconventional myosin-Ic no no 2 0.0050666 53.327 2 1.6549 1.6526 NaN 1 Median 1.6549 1.6526 NaN 1 0 Median NaN NaN NaN 0 0 Median 9007700 1858200 7149500 9007700 1858200 7149500 0 0 0 10105 1088;1189 10387 26808;26809 41987;41988 41988 834 2 NPLFCGAENTSLWELK LKGGKQLNKYDPFSRNPLFCGAENTSLWEL PLFCGAENTSLWELKKLSVHFHPSVALFAK R N P L K K 1 0 2 0 1 0 2 1 0 0 3 1 0 1 1 1 1 1 0 0 0 0 16 0 1877.8982 B2R5U7;Q03701 B2R5U7 702 717 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 7.4776E-05 81.565 2 2 0.98021 0.8922 5.0465 4 Median 0.8505 0.86195 4.5465 2 0 Median 1.1408 0.91893 3.8424 2 0 Median 25432000 13665000 11767000 15124000 8862700 6260900 10308000 4802000 5506400 10106 836;1683 10388 26810;26811;26812;26813 41989;41990;41991;41992;41993;41994;41995;41996 41993 8 NPLIINSIIDK GGLMFNTGIGQHILKNPLIINSIIDKAALR HILKNPLIINSIIDKAALRPTDVVLEVGPG K N P D K A 0 0 2 1 0 0 0 0 0 4 1 1 0 0 1 1 0 0 0 0 0 0 11 0 1238.7234 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2;D6RCL3 A8K9K8 41 51 DIMT1 Probable dimethyladenosine transferase yes no 2 4.0226E-05 100.48 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57691000 57691000 0 49823000 49823000 0 7867500 7867500 0 10107 786 10389 26814;26815;26816;26817 41997;41998;41999;42000 41997 4 NPLPPSVGVVDK AAGKQLRKESQKDRKNPLPPSVGVVDKKEE DRKNPLPPSVGVVDKKEETQPPVALKKEGI K N P D K K 0 0 1 1 0 0 0 1 0 0 1 1 0 0 3 1 0 0 0 3 0 0 12 0 1220.6765 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 80 91 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 2 0.014189 43.77 2 2.1235 2.1088 10.053 2 Median 2.1235 2.1088 10.053 2 0 Median NaN NaN NaN 0 0 Median 49432000 16964000 32468000 49432000 16964000 32468000 0 0 0 10108 1832 10390 26818;26819 42001;42002;42003 42003 3 NPLVAVYYTNR KYPEAAACYGRAITRNPLVAVYYTNRALCY AITRNPLVAVYYTNRALCYLKMQQHEQALA R N P N R A 1 1 2 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 2 2 0 0 11 0 1308.6826 Q9UNE7 Q9UNE7 56 66 STUB1 E3 ubiquitin-protein ligase CHIP yes yes 2 2.7676E-08 114.5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12183000 4057200 8126000 12183000 4057200 8126000 0 0 0 10109 2115 10391 26820;26821 42004;42005 42005 2 NPNGPYPYTLK DALETLGFLNHYQMKNPNGPYPYTLKLCFS YQMKNPNGPYPYTLKLCFSTAQHAS_____ K N P L K L 0 0 2 0 0 0 0 1 0 0 1 1 0 0 3 0 1 0 2 0 0 0 11 0 1262.6295 B2R959;Q6NTA2;P14866;M0QXS5 B2R959 538 548 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 4.3615E-10 131.12 2 2 1.5899 1.7497 52.284 4 Linear 1.5598 1.7008 2.5212 2 0 Median 0.87977 0.68981 7.1097 2 0 Median 86162000 34127000 52035000 79644000 30567000 49078000 6517900 3560700 2957100 10110 865 10392 26822;26823;26824;26825 42006;42007;42008;42009;42010;42011;42012 42008 7 NPPGFAFVEFEDPR AFSYYGPLRTVWIARNPPGFAFVEFEDPRD RNPPGFAFVEFEDPRDAEDAVRGLDGKVIC R N P P R D 1 1 1 1 0 0 2 1 0 0 0 0 0 3 3 0 0 0 0 1 0 0 14 0 1620.7573 Q16629;A0A0B4J1Z1;B4DEK2;C9JAB2;B2R6F3;P84103;A0A087X2D0 Q16629 45 58 SRSF7;SFRS3;SRSF3 Serine/arginine-rich splicing factor 7;Serine/arginine-rich splicing factor 3 no no 2 3.8972E-05 94.767 4 2 1.3446 1.5172 9.6671 4 Median 1.3446 1.5172 9.6671 4 0 Median NaN NaN NaN 0 0 Median 523900000 243720000 280180000 486030000 205860000 280180000 37863000 37863000 0 10111 1772;841 10393 26826;26827;26828;26829;26830;26831 42013;42014;42015;42016;42017;42018;42019;42020;42021 42017 9 NPPGFAFVEFEDPRDAADAVR AFGYYGPLRSVWVARNPPGFAFVEFEDPRD FVEFEDPRDAADAVRELDGRTLCGCRVRVE R N P V R E 4 2 1 3 0 0 2 1 0 0 0 0 0 3 3 0 0 0 0 2 0 0 21 1 2319.092 B2R6F3;P84103;A0A087X2D0 B2R6F3 44 64 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 3 2.9354E-11 90.316 2 2 0.88946 0.87053 58.35 4 Median 1.2813 1.4371 6.2523 2 0 Median 0.60552 0.52529 6.7982 2 0 Median 270730000 145050000 125680000 128610000 55348000 73264000 142120000 89701000 52421000 10112 841 10394 26832;26833;26834;26835 42022;42023;42024;42025;42026;42027;42028;42029;42030 42025 9 NPPGFAFVEFEDPRDAEDAVR AFSYYGPLRTVWIARNPPGFAFVEFEDPRD FVEFEDPRDAEDAVRGLDGKVICGSRVRVE R N P V R G 3 2 1 3 0 0 3 1 0 0 0 0 0 3 3 0 0 0 0 2 0 0 21 1 2377.0975 Q16629;A0A0B4J1Z1;B4DEK2;C9JAB2 Q16629 45 65 SRSF7 Serine/arginine-rich splicing factor 7 yes no 3 7.7561E-09 80.303 2 2 1.0364 1.0618 34.197 4 Median 1.2055 1.3796 5.5284 2 0 Median 0.89355 0.77593 12.865 2 0 Median 739480000 368530000 370950000 549880000 265720000 284160000 189600000 102810000 86789000 10113 1772 10395 26836;26837;26838;26839 42031;42032;42033;42034;42035;42036;42037 42031 7 NPPGYLEDSFVK DSGQSGSPSHNDPAKNPPGYLEDSFVKSGV PAKNPPGYLEDSFVKSGVFNVSELVRVSRT K N P V K S 0 0 1 1 0 0 1 1 0 0 1 1 0 1 2 1 0 0 1 1 0 0 12 0 1364.6612 A0A1B0GW37;U3KQE8;Q5VW28;A0A1B0GWJ4;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWI9;Q5VW27;Q5VW30;Q5VW26;O00712;A0A1B0GVN4;A0A1B0GTC1;A0A1B0GWB8 A0A1B0GW37 194 205 NFIB Nuclear factor 1;Nuclear factor 1 B-type yes no 2 0.020754 39.148 1 0.89842 0.74164 NaN 1 Median NaN NaN NaN 0 0 Median 0.89842 0.74164 NaN 1 0 Median 2345000 1252800 1092200 0 0 0 2345000 1252800 1092200 10114 473 10396 26840 42038 42038 1 NPPNQSSNERPPSLLVIETK RGKIYKPSSRFADQKNPPNQSSNERPPSLL SSNERPPSLLVIETKKPPLKKGEKEKKKSN K N P T K K 0 1 3 0 0 1 2 0 0 1 2 1 0 0 4 3 1 0 0 1 0 0 20 1 2219.1546 O15042;E7ET15;B4DK81;E7EW00;H0Y8D9 O15042 169 188 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 5.509E-05 42.716 2 2.0189 2.2296 11.543 2 Median 2.0189 2.2296 11.543 2 0 Median NaN NaN NaN 0 0 Median 33149000 11375000 21774000 33149000 11375000 21774000 0 0 0 10115 1374 10397 26841;26842 42039;42040 42040 2 NPPPPINFQEWDGLVR PPPKVESSVVRIEPKNPPPPINFQEWDGLV PPPPINFQEWDGLVRITFVRKNKTLSAAFK K N P V R I 0 1 2 1 0 1 1 1 0 1 1 0 0 1 4 0 0 1 0 1 0 0 16 0 1877.9424 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2 A8K9K8 213 228 DIMT1 Probable dimethyladenosine transferase yes no 2 4.1894E-05 84.289 1 2 1.2534 1.0129 18.566 3 Median 0.81487 0.83421 NaN 1 0 Median 1.3357 1.1067 12.522 2 0 Median 35174000 16503000 18671000 14502000 8664900 5837400 20672000 7837800 12834000 10116 786 10398 26843;26844;26845 42041;42042;42043;42044;42045 42042 5 NPPRFAFVEFEDPR AFSYYGPLRTVWIARNPPRFAFVEFEDPRD RNPPRFAFVEFEDPRDAEDAVRGLDGKVIC R N P P R D 1 2 1 1 0 0 2 0 0 0 0 0 0 3 3 0 0 0 0 1 0 0 14 1 1719.8369 Q8NB80 Q8NB80 45 58 yes yes 3 0.013421 31.389 1 1.0998 1.2048 NaN 1 Median 1.0998 1.2048 NaN 1 0 Median NaN NaN NaN 0 0 Median 19873000 7206600 12666000 19873000 7206600 12666000 0 0 0 10117 1918 10399 26846 42046;42047 42046 2 NPQITCTGFDRPNLYLEVR SSSIREDIVRCLNLRNPQITCTGFDRPNLY TCTGFDRPNLYLEVRRKTGNILQDLQPFLV R N P V R R 0 2 2 1 1 1 1 1 0 1 2 0 0 1 2 0 2 0 1 1 0 0 19 1 2292.1321 Q14191;Q59F09 Q14191 722 740 WRN Werner syndrome ATP-dependent helicase yes no 3 0.0027062 30.956 1 0.98815 0.88668 NaN 1 Median NaN NaN NaN 0 0 Median 0.98815 0.88668 NaN 1 0 Median 2400400 984660 1415700 0 0 0 2400400 984660 1415700 10118 1728 10400 26847 42048 42048 1 NPQNSTVLAR QAKQRSPSKVKPPVRNPQNSTVLARGPASV KPPVRNPQNSTVLARGPASVPSVGKAVATA R N P A R G 1 1 2 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 10 0 1098.5782 E7ETY2;B4DRA2;Q13428;Q59FZ2 Q13428 833 842 TCOF1 Treacle protein no no 2 1.1762E-23 175.44 2 2 1.2009 1.1889 31.269 4 Median 0.82065 0.914 5.7135 2 0 Median 1.8253 1.5593 6.8782 2 0 Median 111730000 59624000 52103000 101850000 56155000 45697000 9875000 3469000 6406000 10119 1712;1225 10401 26848;26849;26850;26851 42049;42050;42051;42052;42053;42054;42055 42051 7 NPQSYLYLVK EGGEEETLRRLGLERNPQSYLYLVKGQCAK LGLERNPQSYLYLVKGQCAKVSSINDKSDW R N P V K G 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 1 0 0 2 1 0 0 10 0 1223.655 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;D3DTH7 F5H6E2 236 245 MYO1C Unconventional myosin-Ic no no 2 4.5608E-06 104.06 4 1.515 1.5425 NaN 1 Median 1.515 1.5425 NaN 1 0 Median NaN NaN NaN 0 0 Median 23853000 16789000 7064200 23853000 16789000 7064200 0 0 0 10120 1088;1189 10402 26852;26853;26854;26855 42056;42057;42058;42059 42058 4 NPSIAVPIVLK IYADKAADIIDGLRKNPSIAVPIVLKRLKM GLRKNPSIAVPIVLKRLKMKEEEWREAQRG K N P L K R 1 0 1 0 0 0 0 0 0 2 1 1 0 0 2 1 0 0 0 2 0 0 11 0 1149.7121 Q96ST3 Q96ST3 687 697 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.00046539 90.696 2 2 0.76528 0.74184 7.7023 4 Median 0.71754 0.74184 1.8816 2 0 Median 0.87253 0.72648 13.041 2 0 Median 34156000 19874000 14282000 30847000 18067000 12780000 3309300 1807300 1502100 10121 1990 10403 26856;26857;26858;26859 42060;42061;42062;42063;42064;42065;42066 42063 7 NPSSPLYTTLGVITK ELKATFCLPILGVKKNPSSPLYTTLGVITK NPSSPLYTTLGVITKGTVIEVNVSELGLVT K N P T K G 0 0 1 0 0 0 0 1 0 1 2 1 0 0 2 2 3 0 1 1 0 0 15 0 1589.8665 Q5J7U2;O95478 Q5J7U2 202 216 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 1.3936E-07 109.84 2 2 1.1727 1.0601 10.851 4 Median 1.0715 1.1776 5.7814 2 0 Median 1.2191 0.98522 1.2687 2 0 Median 141400000 71558000 69846000 96284000 46020000 50264000 45120000 25538000 19582000 10122 1427 10404 26860;26861;26862;26863 42067;42068;42069;42070;42071;42072 42067 6 NPSSSVPPPSAGSVK PPPQLVSTSNRAYMRNPSSSVPPPSAGSVK NPSSSVPPPSAGSVKTSTTGVATTQSPTPR R N P V K T 1 0 1 0 0 0 0 1 0 0 0 1 0 0 4 5 0 0 0 2 0 0 15 0 1409.7151 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2 A0A1P7ZIM8 1175 1189 LMO7 LIM domain only protein 7 yes no 2 8.2097E-05 80.014 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6417400 0 6417400 4693200 0 4693200 1724200 0 1724200 10123 640 10405 26864;26865;26866 42073;42074;42075 42074 3 NPSTVCLCPEQPTCSNADSR ASRGARLPGPVSSARNPSTVCLCPEQPTCS CLCPEQPTCSNADSRAHPLGDEGGTASKKQ R N P S R A 1 1 2 1 3 1 1 0 0 0 1 0 0 0 3 3 2 0 0 1 0 0 20 0 2291.9569 Q9H7E9 Q9H7E9 37 56 C8orf33 UPF0488 protein C8orf33 yes yes 2 0.013313 42.568 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2745000 2745000 0 2745000 2745000 0 0 0 0 10124 2040 10406 26867;26868 42076;42077 42077 2 NPTIVNFPITNVDLR FCIKRFTKNNFFVEKNPTIVNFPITNVDLR NPTIVNFPITNVDLREYLSEEVQAVHKNTT K N P L R E 0 1 3 1 0 0 0 0 0 2 1 0 0 1 2 0 2 0 0 2 0 0 15 0 1711.9257 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;B3KPG7;B3KMG1 B9A018 467 481 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 7.443E-23 134.08 2 2 0.73124 0.65092 15.622 3 Median 0.73124 0.74146 NaN 1 0 Median 0.71062 0.59465 12.787 2 0 Median 60225000 42377000 17849000 45402000 33640000 11762000 14824000 8736800 6086900 10125 1119 10407 26869;26870;26871;26872 42078;42079;42080;42081;42082;42083;42084 42080 7 NPTNTVFDAK ______________________________ ______________________________ M N P A K R 1 0 2 1 0 0 0 0 0 0 0 1 0 1 1 0 2 0 0 1 0 0 10 0 1105.5404 E9PN89 E9PN89 2 11 HSPA8 yes yes 2 0.028964 43.218 2 1.3615 1.4055 3.6302 2 Median 1.3615 1.4055 3.6302 2 0 Median NaN NaN NaN 0 0 Median 60227000 26217000 34010000 60227000 26217000 34010000 0 0 0 10126 1248 10408 26873;26874 42085;42086 42086 2 NPTTPSSVIFPLVK QDSEDDDDILPNMDKNPTTPSSVIFPLVKT KNPTTPSSVIFPLVKTPQCQHVSPGMLGSI K N P V K T 0 0 1 0 0 0 0 0 0 1 1 1 0 1 3 2 2 0 0 2 0 0 14 0 1498.8395 Q6P0N0 Q6P0N0 1021 1034 MIS18BP1 Mis18-binding protein 1 yes yes 2 3.8972E-05 94.767 2 2 0.98248 0.89287 33.752 4 Median 0.63717 0.67332 1.8631 2 0 Median 1.5034 1.2057 4.4363 2 0 Median 91533000 52458000 39075000 67234000 42790000 24443000 24299000 9667800 14631000 10127 1849 10409 26875;26876;26877;26878 42087;42088;42089;42090;42091;42092;42093;42094;42095 42092 9 NPVAPAPDPR GLISENLPLLTEKEKNPVAPAPDPRLPPQS TEKEKNPVAPAPDPRLPPQSCLLLPPTPVR K N P P R L 2 1 1 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 1 0 0 10 0 1032.5352 O75691 O75691 2043 2052 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00013082 96.331 2 1.2082 1.3558 0.54869 2 Median 1.2082 1.3558 0.54869 2 0 Median NaN NaN NaN 0 0 Median 117800000 51753000 66052000 117800000 51753000 66052000 0 0 0 10128 1412 10410 26879;26880 42096;42097;42098;42099 42098 4 NPVHCFDLASLDPR ADFGCGDCRLASSIRNPVHCFDLASLDPRV RNPVHCFDLASLDPRVTVCDMAQVPLEDES R N P P R V 1 1 1 2 1 0 0 0 1 0 2 0 0 1 2 1 0 0 0 1 0 0 14 0 1639.7777 O43159 O43159 328 341 RRP8 Ribosomal RNA-processing protein 8 yes yes 3 0.011225 22.803 1 0.71373 0.59672 NaN 1 Median NaN NaN NaN 0 0 Median 0.71373 0.59672 NaN 1 0 Median 3605900 1898700 1707200 0 0 0 3605900 1898700 1707200 10129 1380 10411 26881 42100 42100 1 NPVSDHFPVGCMK VRAADGPQKLLKVIKNPVSDHFPVGCMKVG IKNPVSDHFPVGCMKVGTSFSIPVVSDVRE K N P M K V 0 0 1 1 1 0 0 1 1 0 0 1 1 1 2 1 0 0 0 2 0 0 13 0 1486.6697 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2 A8K6D2 161 173 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 7.2881E-15 127.87 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14725000 0 14725000 14725000 0 14725000 0 0 0 10130 759 10412 26882 42101 42101 587 1 NPVTIFSLATNEMWR GRVGQDPVLRQVEGKNPVTIFSLATNEMWR NPVTIFSLATNEMWRSGDSEVYQLGDVSQK K N P W R S 1 1 2 0 0 0 1 0 0 1 1 0 1 1 1 1 2 1 0 1 0 0 15 0 1777.8821 Q567R6;A4D1U3;Q04837;A0A0G2JLD8;E7EUY5;B7Z268;C9K0U8 Q567R6 52 66 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 2.204E-07 97.214 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14688000 5237200 9451300 14688000 5237200 9451300 0 0 0 10131 666 10413 26883;26884 42102;42103 42103 519 2 NQALFPACVLK GKDLGLAFEIPPHMKNQALFPACVLKNAEL PHMKNQALFPACVLKNAELKFNFGEEEFKF K N Q L K N 2 0 1 0 1 1 0 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 11 0 1259.6696 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 143 153 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0020855 62.546 2 2 1.2959 1.1533 7.3901 4 Median 1.1436 1.1931 8.7617 2 0 Median 1.4476 1.1262 7.336 2 0 Median 38150000 17001000 21148000 30969000 14749000 16220000 7180500 2252800 4927600 10132 452 10414 26885;26886;26887;26888 42104;42105;42106;42107;42108;42109;42110;42111 42105 8 NQALNIAWQK KSKILTTIEDLDQKKNQALNIAWQKVNKDF LDQKKNQALNIAWQKVNKDFGSIFSTLLPG K N Q Q K V 2 0 2 0 0 2 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1184.6302 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 1027 1036 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 4.4057E-12 145.34 2 2 1.0859 1.061 21.832 4 Median 0.78645 0.90104 1.4804 2 0 Median 1.5833 1.3046 7.5994 2 0 Median 440930000 240730000 200200000 370670000 213480000 157190000 70261000 27249000 43012000 10133 69 10415 26889;26890;26891;26892 42112;42113;42114;42115;42116;42117;42118;42119 42114 8 NQALNTDNYGHDLASVQALQR FHRDADETKEWIEEKNQALNTDNYGHDLAS DNYGHDLASVQALQRKHEGFERDLAALGDK K N Q Q R K 3 1 3 2 0 3 0 1 1 0 3 0 0 0 0 1 1 0 1 1 0 0 21 0 2327.1254 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1233 1253 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 6.1133E-16 104.86 2 2 2.0561 1.9246 30.218 4 Median 1.4166 1.4976 1.2253 2 0 Median 2.9765 2.5232 4.047 2 0 Median 63979000 24147000 39832000 51731000 21093000 30638000 12248000 3054100 9194000 10134 523 10416 26893;26894;26895;26896 42120;42121;42122;42123;42124;42125;42126;42127;42128;42129;42130;42131 42123 12 NQAPPGLYTK LMHISYEAGILENPKNQAPPGLYTKTQDPA LENPKNQAPPGLYTKTQDPAKAPNTPDILE K N Q T K T 1 0 1 0 0 1 0 1 0 0 1 1 0 0 2 0 1 0 1 0 0 0 10 0 1087.5662 Q5T6L4;P00966;B4E395 Q5T6L4 200 209 ASS;ASS1 Argininosuccinate synthase yes no 2 0.0068167 66.621 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8048900 0 8048900 8048900 0 8048900 0 0 0 10135 1437 10417 26897 42132 42132 1 NQDEESQEAPELLK TKEALTRKQQKCRRKNQDEESQEAPELLKR KNQDEESQEAPELLKRPKEYTVRFTFPDPP K N Q L K R 1 0 1 1 0 2 4 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 14 0 1628.753 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 590 603 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.7103E-09 106.49 2 2 0.66575 0.5302 9.0326 2 Median NaN NaN NaN 0 0 Median 0.66575 0.5302 9.0326 2 0 Median 76317000 15617000 60700000 49995000 0 49995000 26322000 15617000 10705000 10136 1926 10418 26898;26899;26900;26901 42133;42134;42135;42136;42137;42138 42134 6 NQDEQEIPFR GLRSKEKKKVNCKPKNQDEQEIPFRLREIM NCKPKNQDEQEIPFRLREIMRSRQEMKNPI K N Q F R L 0 1 1 1 0 2 2 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 10 0 1274.5891 H6QX63;Q6PK04;I3L0U5 H6QX63 73 82 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 0.014443 49.06 2 0.85504 0.72388 4.3476 2 Median NaN NaN NaN 0 0 Median 0.85504 0.72388 4.3476 2 0 Median 14523000 7822700 6700700 0 0 0 14523000 7822700 6700700 10137 1307 10419 26902;26903 42139;42140 42139 2 NQDLAPNSAEQASILSLVTK PAPDETSFSEALLKRNQDLAPNSAEQASIL PNSAEQASILSLVTKINNVIDNLIVAPGTF R N Q T K I 3 0 2 1 0 2 1 0 0 1 3 1 0 0 1 3 1 0 0 1 0 0 20 0 2098.0906 B4DY09;Q53FG3;F4ZW62;Q12905;F4ZW63;X6R6Z1;A0A0A0MRL0 B4DY09 23 42 ILF2 Interleukin enhancer-binding factor 2 yes no 2 3.3061E-06 61.649 1 1.6265 1.6572 NaN 1 Median 1.6265 1.6572 NaN 1 0 Median NaN NaN NaN 0 0 Median 28075000 10991000 17084000 28075000 10991000 17084000 0 0 0 10138 1049 10420 26904 42141;42142 42142 2 NQGGGLSSSGAGEGQGPK KPQKQNDGQRKDPSKNQGGGLSSSGAGEGQ GGLSSSGAGEGQGPKKQTRLGLEAKKEENL K N Q P K K 1 0 1 0 0 2 1 7 0 0 1 1 0 0 1 3 0 0 0 0 0 0 18 0 1586.7285 P07814 P07814 992 1009 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 2.9696E-05 66.533 2 2.7002 2.732 NaN 1 Median 2.7002 2.732 NaN 1 0 Median NaN NaN NaN 0 0 Median 8727300 1905900 6821400 8727300 1905900 6821400 0 0 0 10139 1454 10421 26905;26906 42143;42144;42145 42143 3 NQGGSSWEAPYSR FESSYRNSLDSFGGRNQGGSSWEAPYSRSK GRNQGGSSWEAPYSRSKLRPGFMEDRGREN R N Q S R S 1 1 1 0 0 1 1 2 0 0 0 0 0 0 1 3 0 1 1 0 0 0 13 0 1437.6273 Q5BKZ1 Q5BKZ1 126 138 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 0.00010772 91.937 2 2 1.1543 1.009 25.727 3 Median 1.1032 1.1043 35.63 2 0 Median 1.1543 1.009 NaN 1 0 Median 36091000 20550000 15540000 33468000 18852000 14616000 2622700 1698300 924410 10140 1804 10422 26907;26908;26909;26910 42146;42147;42148;42149;42150;42151;42152 42148 7 NQGGYGGSSSSSSYGSGR SGPYGGGGQYFAKPRNQGGYGGSSSSSSYG GYGGSSSSSSYGSGRRF_____________ R N Q G R R 0 1 1 0 0 1 0 6 0 0 0 0 0 0 0 7 0 0 2 0 0 0 18 0 1693.6928 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q9BSM5;Q6IPF2;H0YH80;B4E0B5;Q3MI39 F8W6I7 288 305 HNRNPA1;HNRPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 2 1.0442E-29 138.31 1 2.573 2.656 NaN 1 Median 2.573 2.656 NaN 1 0 Median NaN NaN NaN 0 0 Median 23998000 7948200 16050000 23998000 7948200 16050000 0 0 0 10141 317 10423 26911 42153;42154 42153 2 NQGLFHR KSKYRSIMFNLKDPKNQGLFHRVLREEISL MFNLKDPKNQGLFHRVLREEISLAKLVRLK K N Q H R V 0 1 1 0 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 870.44603 Q9BTC0 Q9BTC0 737 743 DIDO1 Death-inducer obliterator 1 yes yes 2 0.016896 97.596 2 0.78911 0.78435 7.6573 2 Median 0.78911 0.78435 7.6573 2 0 Median NaN NaN NaN 0 0 Median 29036000 17300000 11736000 29036000 17300000 11736000 0 0 0 10142 2002 10424 26912;26913 42155;42156 42155 2 NQGSELSGVISSACDK TSKSNPGNNMACISKNQGSELSGVISSACD QGSELSGVISSACDKESNMERRVITISKSE K N Q D K E 1 0 1 1 1 1 1 2 0 1 1 1 0 0 0 4 0 0 0 1 0 0 16 0 1650.7519 A0JLU2;B4DYG2;O43683;A8K5A6 A0JLU2 188 203 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 7.6666E-07 97.69 2 1 1.0483 0.93443 1.2662 2 Median 0.94114 0.94284 NaN 1 0 Median 1.1677 0.9261 NaN 1 0 Median 18323000 9909200 8414100 13898000 8008900 5889500 4424800 1900200 2524600 10143 641 10425 26914;26915;26916 42157;42158;42159;42160 42159 4 NQGYYDYVK KYPNAELAWCQEEHKNQGYYDYVKPRLRTT CQEEHKNQGYYDYVKPRLRTTISRAKPVWY K N Q V K P 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 3 1 0 0 9 0 1148.5138 B4DF00;E9PDF2;E9PCR7;Q02218;B4DZ95;B4E3E9;B4DH65;E9PFG7;B4DK55;A0A0D9SFS3 B4DF00 913 921 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.037381 43.083 1 1.0448 1.0563 NaN 1 Median 1.0448 1.0563 NaN 1 0 Median NaN NaN NaN 0 0 Median 6872000 3358300 3513800 6872000 3358300 3513800 0 0 0 10144 968 10426 26917 42161 42161 1 NQHFEVPFIAFYR PSTIQKIKEALGFMRNQHFEVPFIAFYRKE MRNQHFEVPFIAFYRKEYVEPELHINDLWR R N Q Y R K 1 1 1 0 0 1 1 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 13 0 1666.8256 Q7KZ85 Q7KZ85 368 380 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.043002 13.418 1 0.80118 0.71494 NaN 1 Median NaN NaN NaN 0 0 Median 0.80118 0.71494 NaN 1 0 Median 834650 463430 371220 0 0 0 834650 463430 371220 10145 1870 10427 26918 42162 42162 1 NQIALWDQLLEGR SVKVSEEVEKGRAVKNQIALWDQLLEGRIK VKNQIALWDQLLEGRIKLQKALLTTNQLPQ K N Q G R I 1 1 1 1 0 2 1 1 0 1 3 0 0 0 0 0 0 1 0 0 0 0 13 0 1554.8154 Q9NY61 Q9NY61 229 241 AATF Protein AATF yes yes 2 3.2847E-19 147.74 2 2 1.302 1.2583 32.83 4 Median 0.93255 0.99129 6.988 2 0 Median 1.9827 1.7029 16.035 2 0 Median 136350000 66084000 70270000 76125000 42181000 33945000 60229000 23903000 36325000 10146 2080 10428 26919;26920;26921;26922 42163;42164;42165;42166;42167;42168;42169;42170;42171;42172;42173 42167 11 NQILNLTTDNANILLQIDNAR PRDYSKYYKTIDDLKNQILNLTTDNANILL TTDNANILLQIDNARLAADDFRLKYENEVA K N Q A R L 2 1 5 2 0 2 0 0 0 3 4 0 0 0 0 0 2 0 0 0 0 0 21 0 2366.2554 CON__P13645;P13645 CON__P13645 208 228 KRT10 Keratin, type I cytoskeletal 10 yes no 2 0 310.04 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 792480000 792480000 0 349940000 349940000 0 442540000 442540000 0 + 10147 1161 10429 26923;26924;26925;26926 42174;42175;42176;42177;42178 42177 5 NQIQDQEQLVSK KQKLEKKDEEISRLKNQIQDQEQLVSKLSQ RLKNQIQDQEQLVSKLSQVEGEHQLWKEQN K N Q S K L 0 0 1 1 0 4 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 12 0 1428.7209 P49454 P49454 2625 2636 CENPF Centromere protein F yes yes 2 0.00022908 84.658 1 1 1.2259 1.1314 8.2127 2 Median 0.98455 1.0675 NaN 1 0 Median 1.5265 1.199 NaN 1 0 Median 25547000 13822000 11725000 22400000 12443000 9957100 3146800 1379000 1767900 10148 1581 10430 26927;26928 42179;42180 42179 2 NQIVTILQDR EKCKPQLLNFPPYTRNQIVTILQDRLNQVS PPYTRNQIVTILQDRLNQVSRDQVLDNAAV R N Q D R L 0 1 1 1 0 2 0 0 0 2 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1198.667 B2R935;A0A024R1S2;Q99741 B2R935 349 358 CDC6 Cell division control protein 6 homolog yes no 2 0.057544 35.269 1 1.1949 1.0328 NaN 1 Median NaN NaN NaN 0 0 Median 1.1949 1.0328 NaN 1 0 Median 1755300 667300 1088000 0 0 0 1755300 667300 1088000 10149 85 10431 26929 42181 42181 1 NQLCDLETK EKLNLLHEFLQTEIKNQLCDLETKLRKEEL LQTEIKNQLCDLETKLRKEELSEEGYLAKV K N Q T K L 0 0 1 1 1 1 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1119.523 A0A024R7E3;P26358;Q59FP7;K7EJL0;K7EMU8 A0A024R7E3 121 129 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.051753 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3417800 3417800 0 3417800 3417800 0 0 0 0 10150 222 10432 26930 42182 42182 1 NQLELLR RKFQPLFGDFAAEKKNQLELLRVMNSKKPQ GDFAAEKKNQLELLRVMNSKKPQLDVTRAT K N Q L R V 0 1 1 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 884.50797 Q15050 Q15050 267 273 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.010057 118.01 2 1 0.83561 0.94566 15.644 3 Median 0.83154 0.94596 0.04361 2 0 Median 0.88327 0.72143 NaN 1 0 Median 268110000 147040000 121060000 258820000 141960000 116860000 9287200 5088900 4198400 10151 1750 10433 26931;26932;26933 42183;42184;42185;42186;42187 42183 5 NQLQGLQK NWNINFIKMIHGTIKNQLQGLQKSLMVYIA MIHGTIKNQLQGLQKSLMVYIAEIYFRAWK K N Q Q K S 0 0 1 0 0 3 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 927.51378 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;F8WE06 Q86XI2 249 256 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.0077998 81.381 2 0.90285 0.96525 21.977 2 Median 0.90285 0.96525 21.977 2 0 Median NaN NaN NaN 0 0 Median 53136000 29794000 23342000 53136000 29794000 23342000 0 0 0 10152 1887 10434 26934;26935 42188;42189;42190 42190 3 NQLTSNPENTVFDAK AFTPEGERLIGDAAKNQLTSNPENTVFDAK NQLTSNPENTVFDAKRLIGRTWNDPSVQQD K N Q A K R 1 0 3 1 0 1 1 0 0 0 1 1 0 1 1 1 2 0 0 1 0 0 15 0 1676.8006 V9HWB4;P11021;B4DEF7 V9HWB4 82 96 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 4.8022E-15 126.76 2 2 0.62942 0.57333 23.994 4 Median 0.70977 0.70907 5.9198 2 0 Median 0.58149 0.47074 3.7528 2 0 Median 64840000 37329000 27512000 50752000 29189000 21563000 14088000 8139800 5948100 10153 1466 10435 26936;26937;26938;26939 42191;42192;42193;42194;42195;42196;42197;42198;42199;42200 42195 10 NQLVTPEPTSR SIVPIAPELQPSTSRNQLVTPEPTSRATRC STSRNQLVTPEPTSRATRCRTNRSSVKTPE R N Q S R A 0 1 1 0 0 1 1 0 0 0 1 0 0 0 2 1 2 0 0 1 0 0 11 0 1240.6412 Q14676;B4DYH4 Q14676 1585 1595 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.00044841 77.677 2 2 0.52327 0.55011 19.551 3 Plateau 0.52327 0.53601 11.62 2 0 Median 0.44875 0.3942 NaN 1 0 Median 45008000 26894000 18114000 39782000 24414000 15368000 5225700 2479800 2746000 10154 1738 10436 26940;26941;26942;26943 42201;42202;42203;42204;42205 42201 5 NQMLMTPTSAPR KVVRPLRTFLHTVQRNQMLMTPTSAPRSVM VQRNQMLMTPTSAPRSVMKSFIKRNTPLRM R N Q P R S 1 1 1 0 0 1 0 0 0 0 1 0 2 0 2 1 2 0 0 0 0 0 12 0 1345.6482 Q9NQS7;B3KPD3 Q9NQS7 502 513 INCENP Inner centromere protein yes no 2 1.1326E-17 140.49 5 2 1.1274 1.049 13.32 4 Median 1.0813 1.1987 8.6963 2 0 Median 1.1497 0.96835 1.1445 2 0 Median 181570000 50884000 130680000 165090000 43253000 121830000 16480000 7630600 8848900 10155 2059 10437 26944;26945;26946;26947;26948;26949;26950 42206;42207;42208;42209;42210;42211;42212;42213;42214;42215 42207 1891;1892 10 NQNLMLELETVQQALR EHQEFLTKLAFAEERNQNLMLELETVQQAL QNLMLELETVQQALRSEMTDNQNNSKSEAG R N Q L R S 1 1 2 0 0 3 2 0 0 0 4 0 1 0 0 0 1 0 0 1 0 0 16 0 1898.9884 P49454 P49454 1096 1111 CENPF Centromere protein F yes yes 2 2.1493E-05 70.488 2 1.1768 1.1951 32.582 2 Median 1.1768 1.1951 32.582 2 0 Median NaN NaN NaN 0 0 Median 13143000 6284800 6858200 13143000 6284800 6858200 0 0 0 10156 1581 10438 26951;26952 42216;42217 42217 1364 1 NQNSWGTGEDVK NAGVTASPPTDLIWKNQNSWGTGEDVKVIL IWKNQNSWGTGEDVKVILKNSQGEEVAQRS K N Q V K V 0 0 2 1 0 1 1 2 0 0 0 1 0 0 0 1 1 1 0 1 0 0 12 0 1333.5899 P20700;B4DZT3 P20700 517 528 LMNB1 Lamin-B1 yes no 2 2.7563E-29 167.67 2 1.0401 1.0644 8.0438 2 Median 1.0401 1.0644 8.0438 2 0 Median NaN NaN NaN 0 0 Median 43880000 21421000 22459000 43880000 21421000 22459000 0 0 0 10157 1502 10439 26953;26954 42218;42219;42220;42221 42221 4 NQPDYYEVVSQPIDLMK GRLLCELFIRAPKRRNQPDYYEVVSQPIDL PDYYEVVSQPIDLMKIQQKLKMEEYDDVNL R N Q M K I 0 0 1 2 0 2 1 0 0 1 1 1 1 0 2 1 0 0 2 2 0 0 17 0 2037.9717 Q86U86;E7EVG2;H0Y5B5;C9J053;C9JQF1;C9JPI5 Q86U86 80 96 PBRM1 Protein polybromo-1 yes no 2 0.015364 40.475 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10158 1883 10440 26955 42222 42222 1727 1 NQPTNVTLSSGFVADR ______________________________ QPTNVTLSSGFVADRGVKHHSGGEKPFQAQ R N Q D R G 1 1 2 1 0 1 0 1 0 0 1 0 0 1 1 2 2 0 0 2 0 0 16 0 1704.8431 Q96F88;Q99575;E5RK39 Q96F88 15 30 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 3.4041E-06 89.301 1 2 0.59524 0.4878 16.624 3 Median 0.31627 0.36807 NaN 1 0 Median 0.59595 0.49079 0.86524 2 0 Median 92011000 66114000 25897000 60473000 45767000 14706000 31539000 20348000 11191000 10159 1965 10441 26956;26957;26958 42223;42224;42225;42226;42227 42224 5 NQQITHANNTVSNFK ISFGSKNRTIGVAAKNQQITHANNTVSNFK NQQITHANNTVSNFKRFHGRAFNDPFIQKE K N Q F K R 1 0 4 0 0 2 0 0 1 1 0 1 0 1 0 1 2 0 0 1 0 0 15 0 1714.8387 A0A024RDQ0;A0A024RDS1;Q92598;B4DZB4;A0A0A0MSM0;R4GN69 A0A024RDQ0 54 68 HSPH1 Heat shock protein 105 kDa yes no 2;3 5.1259E-100 238.13 4 2.5388 2.6278 27.781 4 Linear 2.5388 2.6278 27.781 4 0 Linear NaN NaN NaN 0 0 Median 105790000 33069000 72725000 105790000 33069000 72725000 0 0 0 10160 390 10442 26959;26960;26961;26962 42228;42229;42230;42231;42232;42233;42234 42232 7 NQQPVLPAGLQVPK ERVGILLDEASGVNKNQQPVLPAGLQVPKT KNQQPVLPAGLQVPKTVVSSWNRKAAEYGK K N Q P K T 1 0 1 0 0 3 0 1 0 0 2 1 0 0 3 0 0 0 0 2 0 0 14 0 1487.846 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 137 150 EXOSC10 Exosome component 10 yes no 2 0.0054367 43.77 1 2 1.0077 0.8439 5.7094 3 Median 0.86409 0.87224 NaN 1 0 Median 1.0158 0.81156 5.5256 2 0 Median 52316000 26639000 25677000 28384000 15649000 12735000 23933000 10990000 12943000 10161 1676 10443 26963;26964;26965 42235;42236;42237;42238;42239;42240;42241 42236 7 NQSFASTHLNQNSSR QDAEEAWKLLKVGRKNQSFASTHLNQNSSR NQSFASTHLNQNSSRSHSIFSIRILHLQGE K N Q S R S 1 1 3 0 0 2 0 0 1 0 1 0 0 1 0 4 1 0 0 0 0 0 15 0 1689.7819 O95235 O95235 365 379 KIF20A Kinesin-like protein KIF20A yes yes 2;3 5.545E-99 243.3 4 3 0.87718 0.93483 13.298 7 Median 0.74674 0.84361 11.411 4 0 Median 1.2564 1.062 8.449 3 0 Median 338820000 187970000 150850000 272050000 158950000 113100000 66766000 29019000 37746000 10162 1421 10444 26966;26967;26968;26969;26970;26971;26972 42242;42243;42244;42245;42246;42247;42248;42249;42250;42251;42252;42253;42254 42245 13 NQSFCPTVNLDK GYFGKVGMKHYHLKRNQSFCPTVNLDKLWT LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK R N Q D K L 0 0 2 1 1 1 0 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 12 0 1421.6609 Q9BQQ5;E9PLL6;Q6NZ52;P46776;E9PJD9 Q9BQQ5 66 77 L27a;RPL27A 60S ribosomal protein L27a yes no 2 6.9879E-38 183 2 2 0.79436 0.77758 7.7344 4 Median 0.72002 0.84086 5.2244 2 0 Median 0.85709 0.74336 0.52256 2 0 Median 917160000 524310000 392860000 569740000 333300000 236450000 347420000 191010000 156410000 10163 1247 10445 26973;26974;26975;26976 42255;42256;42257;42258;42259;42260;42261;42262 42258 8 NQSIIVSGESGAGK AVAEEAYKQMARNNRNQSIIVSGESGAGKT RNQSIIVSGESGAGKTVSARYAMRYFATVS R N Q G K T 1 0 1 0 0 1 1 3 0 2 0 1 0 0 0 3 0 0 0 1 0 0 14 0 1345.6838 Q9NQX4 Q9NQX4 154 167 MYO5C Unconventional myosin-Vc no no 2 0.0020359 67.08 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11485000 0 11485000 11485000 0 11485000 0 0 0 10164 2062 10446 26977;26978 42263;42264 42264 2 NQSLTLIELLK NEYDETKPELPSGKKNQSLTLIELLKNKRM SGKKNQSLTLIELLKNKRMGEERNSAISPQ K N Q L K N 0 0 1 0 0 1 1 0 0 1 4 1 0 0 0 1 1 0 0 0 0 0 11 0 1270.7497 A7E234;Q9H582;Q9NVH8;Q9H8J8;Q8NEI6 A7E234 1165 1175 ZNF644 Zinc finger protein 644 yes no 2 0.0012626 68.847 2 2 0.95127 0.87743 15.44 4 Median 0.74359 0.74861 9.9393 2 0 Median 1.1578 0.95957 0.14004 2 0 Median 16678000 8679900 7997900 12481000 6815600 5665900 4196300 1864300 2332000 10165 693 10447 26979;26980;26981;26982 42265;42266;42267;42268;42269;42270;42271 42266 7 NQSLVEENEK ITVEPSENLQSLMEKNQSLVEENEKLSRGL SLMEKNQSLVEENEKLSRGLSEAAGQTAQM K N Q E K L 0 0 2 0 0 1 3 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1188.5622 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 395 404 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 1.2241E-05 103.55 1 0.90772 0.97722 NaN 1 Median 0.90772 0.97722 NaN 1 0 Median NaN NaN NaN 0 0 Median 33381000 16152000 17229000 33381000 16152000 17229000 0 0 0 10166 1803 10448 26983 42272;42273 42273 2 NQSPVLEPVGR LVKGAMAATYSALNRNQSPVLEPVGRSTLA ALNRNQSPVLEPVGRSTLAQRRGIKKITST R N Q G R S 0 1 1 0 0 1 1 1 0 0 1 0 0 0 2 1 0 0 0 2 0 0 11 0 1194.6357 B4DKZ2;B4DG22;B7ZB17;P51812 B4DKZ2 683 693 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.0010483 62.823 1 1.6095 1.6124 NaN 1 Median 1.6095 1.6124 NaN 1 0 Median NaN NaN NaN 0 0 Median 17193000 7095800 10098000 17193000 7095800 10098000 0 0 0 10167 971 10449 26984 42274;42275 42274 2 NQSQGYNQWQQGQFWGQK YNQNFRGRGNNRGYKNQSQGYNQWQQGQFW QGYNQWQQGQFWGQKPWSQHYHQGYY____ K N Q Q K P 0 0 2 0 0 7 0 3 0 0 0 1 0 1 0 1 0 2 1 0 0 0 18 0 2210.9882 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 756 773 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 5.5067E-30 144.1 2 1.3632 1.3565 6.3311 2 Median 1.3632 1.3565 6.3311 2 0 Median NaN NaN NaN 0 0 Median 50231000 23501000 26730000 50231000 23501000 26730000 0 0 0 10168 999 10450 26985;26986 42276;42277;42278;42279;42280;42281;42282 42279 7 NQSSDSSSACLEIK RSQLSDSSSADRCLRNQSSDSSSACLEIKV RNQSSDSSSACLEIKVPKNPSAKRSKKEGH R N Q I K V 1 0 1 1 1 1 1 0 0 1 1 1 0 0 0 5 0 0 0 0 0 0 14 0 1524.6726 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 805 818 C10orf12 yes no 2 0.002706 60.49 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3062600 0 3062600 3062600 0 3062600 0 0 0 10169 630 10451 26987;26988 42283;42284 42284 2 NQVALNPQNTVFDAK VAFTDTERLIGDAAKNQVALNPQNTVFDAK NQVALNPQNTVFDAKRLIGRKFGDPVVQSD K N Q A K R 2 0 3 1 0 2 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 15 0 1657.8424 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4E388;B4DNX1;B4E1T6 A8K5I0 57 71 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 2.9284E-84 217.14 3 2 0.92737 0.93241 2.7174 4 Median 0.80137 0.94109 0.94197 2 0 Median 1.0923 0.90969 3.1214 2 0 Median 721600000 394240000 327360000 632980000 350980000 282000000 88626000 43261000 45365000 10170 533 10452 26989;26990;26991;26992;26993 42285;42286;42287;42288;42289;42290;42291;42292;42293;42294;42295 42286 11 NQVAMNPTNTVFDAK VAFTDTERLIGDAAKNQVAMNPTNTVFDAK NQVAMNPTNTVFDAKRLIGRRFDDAVVQSD K N Q A K R 2 0 3 1 0 1 0 0 0 0 0 1 1 1 1 0 2 0 0 2 0 0 15 0 1648.7879 V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;E9PNE6;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 V9HW22 57 71 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 1.7952E-58 193.73 2 2 1.158 1.1226 46.645 4 Median 1.4716 1.7148 6.0567 2 0 Median 0.94698 0.76619 0.15196 2 0 Median 578780000 233870000 344910000 531620000 209490000 322130000 47159000 24374000 22785000 10171 1467 10453 26994;26995;26996;26997 42296;42297;42298;42299;42300;42301 42297 1180 6 NQVDVEIK ETERSALDVKLKHARNQVDVEIKRRQRAEA VKLKHARNQVDVEIKRRQRAEADCEKLERQ R N Q I K R 0 0 1 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 8 0 943.49746 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VWX0;F8W0L1;F8VZ66;F8VV47;F8VVE5;F8VUW9;F8VV39;F8VQZ5;F8VS54;F8VV37;F8VYH6 B2RE34 77 84 RACGAP1 Rac GTPase-activating protein 1 yes no 2 0.052149 49.097 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13697000 0 13697000 13697000 0 13697000 0 0 0 10172 68 10454 26998 42302 42302 1 NQVGDENWR DDLRDMFCKILHGFKNQVGDENWRRFSDQF ILHGFKNQVGDENWRRFSDQFPLPLKERLA K N Q W R R 0 1 2 1 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 9 0 1116.4948 A0A024RAM0;Q92973;S4R398 A0A024RAM0 870 878 TNPO1 Transportin-1 yes no 2 1.8757E-05 119.29 2 2.7607 2.7944 3.6317 2 Median 2.7607 2.7944 3.6317 2 0 Median NaN NaN NaN 0 0 Median 34914000 9941600 24972000 34914000 9941600 24972000 0 0 0 10173 309 10455 26999;27000 42303;42304 42304 2 NQVLVFVHSR MNEIVYEKIMEHAGKNQVLVFVHSRKETGK EHAGKNQVLVFVHSRKETGKTARAIRDMCL K N Q S R K 0 1 1 0 0 1 0 0 1 0 1 0 0 1 0 1 0 0 0 3 0 0 10 0 1197.6618 O75643;A4FU77;Q9H8B9 O75643 719 728 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00069328 82.749 1 2 0.9966 1.0447 73.967 3 Plateau 0.9966 1.0447 NaN 1 0 Median 0.47593 0.40834 71.126 2 0 Median 17399000 8243400 9155200 12320000 5343900 6976600 5078200 2899500 2178600 10174 1411 10456 27001;27002;27003 42305;42306;42307;42308 42305 4 NREEFEDQSLEK KDKNETENDSKDAEKNREEFEDQSLEKDSD AEKNREEFEDQSLEKDSDDKTPDDDPEQGK K N R E K D 0 1 1 1 0 1 4 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 12 1 1522.69 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40;F5H176 E7ETD6 454 465 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 1.6646E-08 119.39 2 0.54396 0.61694 NaN 1 Median 0.54396 0.61694 NaN 1 0 Median NaN NaN NaN 0 0 Median 17194000 7289600 9904200 17194000 7289600 9904200 0 0 0 10175 1224 10457 27004;27005 42309;42310 42309 2 NREELGFRPEYSASQLK LGMIDRWYHPGCFVKNREELGFRPEYSASQ EELGFRPEYSASQLKGFSLLATEDKEALKK K N R L K G 1 2 1 0 0 1 3 1 0 0 2 1 0 1 1 2 0 0 1 0 0 0 17 2 2023.0123 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0 A0A024R3T8 166 182 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 0.010419 37.083 1 1 0.76727 0.78768 25.092 2 Median 0.58535 0.65962 NaN 1 0 Median 1.0057 0.94061 NaN 1 0 Median 31199000 17241000 13958000 21117000 12240000 8877700 10082000 5001500 5080200 10176 139 10458 27006;27007 42311;42312 42311 1 NREPVQLETLSIR VSMNTHLKAVKMTLKNREPVQLETLSIRGN LKNREPVQLETLSIRGNNIRYFILPDSLPL K N R I R G 0 2 1 0 0 1 2 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 13 1 1553.8526 P62314;Q7Z5A3;J3QLI9 P62314 49 61 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes no 3 5.4577E-05 74.475 2 2 0.9042 1.0263 26.064 4 Linear 0.87719 0.98865 15.725 2 0 Median 0.74974 0.65924 12.181 2 0 Median 208670000 106550000 102120000 186330000 93124000 93205000 22339000 13423000 8916000 10177 1644 10459 27008;27009;27010;27011 42313;42314;42315;42316;42317 42313 5 NRNELAETLALLK EQDDQDGSSWKCIVRNRNELAETLALLKAQ VRNRNELAETLALLKAQIDPVLLKNSSQQD R N R L K A 2 1 2 0 0 0 2 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 13 1 1483.8358 Q96T23;H0YER1;Q05DG0;H7C306 Q96T23 194 206 RSF1 Remodeling and spacing factor 1 yes no 2 0.050259 46.844 1 0.46434 0.52088 NaN 1 Median 0.46434 0.52088 NaN 1 0 Median NaN NaN NaN 0 0 Median 6588700 4822600 1766100 6588700 4822600 1766100 0 0 0 10178 1991 10460 27012 42318 42318 0 NRPAPYSRPK NRPAIARGAAGGGGRNRPAPYSRPKQLPDK GGGGRNRPAPYSRPKQLPDKWQHDLFDSGF R N R P K Q 1 2 1 0 0 0 0 0 0 0 0 1 0 0 3 1 0 0 1 0 0 0 10 2 1184.6414 E9PB61;Q86V81 E9PB61 79 88 ALYREF THO complex subunit 4 yes no 3 0.041721 29.534 1 0.45213 0.49008 NaN 1 Median 0.45213 0.49008 NaN 1 0 Median NaN NaN NaN 0 0 Median 10611000 8154700 2455900 10611000 8154700 2455900 0 0 0 10179 1229 10461 27013 42319 42319 1 NRPEPHSDENGSTTPK TAESQRTSVNKVKNKNRPEPHSDENGSTTP RPEPHSDENGSTTPKVKKDKQNIFEFFERQ K N R P K V 0 1 2 1 0 0 2 1 1 0 0 1 0 0 3 2 2 0 0 0 0 0 16 1 1764.8027 B2R5U7;C9J9W7;Q03701 B2R5U7 143 158 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.0004494 65.105 2 1 1.9861 1.8172 NaN 1 Median NaN NaN NaN 0 0 Median 1.9861 1.8172 NaN 1 0 Median 1497100 518280 978810 0 0 0 1497100 518280 978810 10180 836;1683 10462 27014;27015;27016 42320;42321;42322 42321 3 NRPNVQVGDLIYGQFVVANK PASLSYLSFEGATKRNRPNVQVGDLIYGQF QVGDLIYGQFVVANKDMEPEMVCIDSCGRA R N R N K D 1 1 3 1 0 2 0 2 0 1 1 1 0 1 1 0 0 0 1 4 0 0 20 1 2230.1859 Q9NQT5 Q9NQT5 153 172 EXOSC3 Exosome complex component RRP40 yes yes 3 0.0030402 26.144 2 0.84308 0.70938 4.5891 2 Median NaN NaN NaN 0 0 Median 0.84308 0.70938 4.5891 2 0 Median 8422000 4070000 4352000 0 0 0 8422000 4070000 4352000 10181 2061 10463 27017;27018 42323;42324 42323 2 NRPPLPAGTNSK KDVYVQLYLQHLTARNRPPLPAGTNSKGPP TARNRPPLPAGTNSKGPPDFSSDEEREPTP R N R S K G 1 1 2 0 0 0 0 1 0 0 1 1 0 0 3 1 1 0 0 0 0 0 12 1 1250.6731 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;P42166 P42166 49 60 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2;3 1.1853E-37 186.74 3 2 1.1292 1.2242 12.679 5 Median 1.0527 1.235 0.77366 3 0 Median 1.1404 0.98028 2.3761 2 0 Median 246980000 120490000 126490000 207350000 102410000 104940000 39632000 18085000 21548000 10182 334;1562 10464 27019;27020;27021;27022;27023 42325;42326;42327;42328;42329;42330;42331;42332;42333 42329 9 NRVPSAGDVEK KEMAKSKSKETTATKNRVPSAGDVEKARVL TATKNRVPSAGDVEKARVLKEEGNELVKKG K N R E K A 1 1 1 1 0 0 1 1 0 0 0 1 0 0 1 1 0 0 0 2 0 0 11 1 1170.5993 Q15785;B4DXU3 Q15785 182 192 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 0.0025231 76.143 2 1.6534 1.8176 43.362 2 Median 1.6534 1.8176 43.362 2 0 Median NaN NaN NaN 0 0 Median 25814000 8411600 17402000 25814000 8411600 17402000 0 0 0 10183 1765 10465 27024;27025 42334;42335;42336 42335 3 NSADDEELTNDSLTLSQSK SEGGCKKKKSKVLSRNSADDEELTNDSLTL DEELTNDSLTLSQSKSNEDSLILEKSQNWS R N S S K S 1 0 2 3 0 1 2 0 0 0 3 1 0 0 0 4 2 0 0 0 0 0 19 0 2065.9288 A0A0U1RRH6;O94880 A0A0U1RRH6 279 297 PHF14 PHD finger protein 14 yes no 2 2.3727E-09 82.55 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9786800 0 9786800 9786800 0 9786800 0 0 0 10184 590 10466 27026;27027 42337;42338;42339;42340 42340 4 NSAEAIIHGLSSLTACQLR RAFRDGRSEDFRRTRNSAEAIIHGLSSLTA AIIHGLSSLTACQLRTIYICQFLTRIAAGK R N S L R T 3 1 1 0 1 1 1 1 1 2 3 0 0 0 0 3 1 0 0 0 0 0 19 0 2040.0422 A0A024R7X2;A0A024R7X1;P54274 A0A024R7X2 139 157 TERF1 Telomeric repeat-binding factor 1 yes no 3 5.1713E-06 65.25 2 1.3388 1.141 14.083 2 Median NaN NaN NaN 0 0 Median 1.3388 1.141 14.083 2 0 Median 5752600 2614700 3137900 0 0 0 5752600 2614700 3137900 10185 236 10467 27028;27029 42341;42342 42342 2 NSAEEEVLSSEK EELNEDIKVKEEQLKNSAEEEVLSSEKQLI QLKNSAEEEVLSSEKQLIKMEKKEEEENGE K N S E K Q 1 0 1 0 0 0 4 0 0 0 1 1 0 0 0 3 0 0 0 1 0 0 12 0 1320.6045 A0A0U1RRH6;O94880 A0A0U1RRH6 83 94 PHF14 PHD finger protein 14 yes no 2 4.9568E-23 159.83 2 2 1.3241 1.2302 23.074 4 Median 0.95476 0.99981 3.9268 2 0 Median 1.8486 1.4877 1.4907 2 0 Median 78405000 36541000 41864000 65824000 32372000 33452000 12581000 4168900 8411900 10186 590 10468 27030;27031;27032;27033 42343;42344;42345;42346;42347;42348;42349 42343 7 NSAELTVIK YLICEDYKLFWVAPRNSAELTVIKVSSQPV FWVAPRNSAELTVIKVSSQPVPWDFYINLK R N S I K V 1 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 973.54441 O60566 O60566 787 795 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.001292 87.308 1 1 1.245 1.1682 17.993 2 Median 0.97832 1.0286 NaN 1 0 Median 1.5845 1.3267 NaN 1 0 Median 25269000 11795000 13475000 23923000 11245000 12678000 1346800 549540 797230 10187 1396 10469 27034;27035 42350;42351;42352 42351 3 NSAFESLYQDK TELLDLQPLPVSALRNSAFESLYQDKFPFF SALRNSAFESLYQDKFPFFNPIQTQVFNTV R N S D K F 1 0 1 1 0 1 1 0 0 0 1 1 0 1 0 2 0 0 1 0 0 0 11 0 1300.5935 O75643;A4FU77 O75643 1314 1324 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 6.533E-11 136.96 2 2 0.93384 0.84281 12.143 4 Median 0.93384 0.93942 3.2395 2 0 Median 0.95171 0.76376 1.8202 2 0 Median 55896000 30260000 25636000 47047000 25652000 21395000 8849800 4608600 4241100 10188 1411 10470 27036;27037;27038;27039 42353;42354;42355;42356;42357;42358;42359;42360;42361 42357 9 NSAILSDPSVFSPLNK SPRKPRGRPRSGSDRNSAILSDPSVFSPLN SAILSDPSVFSPLNKSETKSGDKIKKKDSK R N S N K S 1 0 2 1 0 0 0 0 0 1 2 1 0 1 2 4 0 0 0 1 0 0 16 0 1687.8781 Q03164;E9PR05;Q9UPD0;Q9Y6P1;Q86YP1;Q86YN9 Q03164 186 201 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.00019313 72.089 2 2.4701 1.956 NaN 1 Median NaN NaN NaN 0 0 Median 2.4701 1.956 NaN 1 0 Median 8205400 1663900 6541500 0 0 0 8205400 1663900 6541500 10189 1680 10471 27040;27041 42362;42363 42363 2 NSASATTPLSGNSSR SDKQYAENYTRPSSRNSASATTPLSGNSSR NSASATTPLSGNSSRRGSGDTSSLIDPDTS R N S S R R 2 1 2 0 0 0 0 1 0 0 1 0 0 0 1 5 2 0 0 0 0 0 15 0 1448.6855 C9JSU1;A0A1S5UZ17;A0A024R2K4;Q9Y608 C9JSU1 79 93 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 2 0.00020046 85.845 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10190 114 10472 27042 42364 42364 1 NSAVETVEQELLFVGSETGK KLNLDNVISVSIGARNSAVETVEQELLFVG TVEQELLFVGSETGKLLAMRELVKKGFNPP R N S G K L 1 0 1 0 0 1 4 2 0 0 2 1 0 1 0 2 2 0 0 3 0 0 20 0 2136.0586 Q9Y2R4;Q59H21;B3KM65 Q9Y2R4 380 399 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 1.2873E-12 100.41 1 0.91622 0.94702 NaN 1 Median 0.91622 0.94702 NaN 1 0 Median NaN NaN NaN 0 0 Median 11414000 5877100 5537400 11414000 5877100 5537400 0 0 0 10191 2126 10473 27043 42365;42366;42367 42365 3 NSDEADLVPAK ATDSSGELMFLMKWKNSDEADLVPAKEANV MKWKNSDEADLVPAKEANVKCPQVVISFY_ K N S A K E 2 0 1 2 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1157.5564 B5MD17;J3KS05;Q6IBN6;P83916 B5MD17 144 154 CBX1 Chromobox protein homolog 1 yes no 2 4.6762E-17 159.11 2 1.3729 1.5553 5.8901 2 Median 1.3729 1.5553 5.8901 2 0 Median NaN NaN NaN 0 0 Median 277660000 113900000 163750000 277660000 113900000 163750000 0 0 0 10192 1081 10474 27044;27045 42368;42369;42370;42371;42372 42370 5 NSDLLTSPDVGLLK LADPVGSLKPHLRAKNSDLLTSPDVGLLKL KNSDLLTSPDVGLLKLASPELERLIIQSSN K N S L K L 0 0 1 2 0 0 0 1 0 0 4 1 0 0 1 2 1 0 0 1 0 0 14 0 1470.793 P05412 P05412 57 70 JUN Transcription factor AP-1 yes yes 2 0.00024976 62.258 2 2 1.1082 0.98513 44.475 4 Median 1.405 1.4217 2.2739 2 0 Median 0.82212 0.66035 6.9619 2 0 Median 36584000 18370000 18214000 25745000 12946000 12799000 10838000 5424100 5414400 10193 1447 10475 27046;27047;27048;27049 42373;42374;42375;42376;42377;42378 42376 5 NSEDDGVVMTFSSVK EDSQGESEEDRAGDRNSEDDGVVMTFSSVK NSEDDGVVMTFSSVKVSEEVEKGRAVKNQI R N S V K V 0 0 1 2 0 0 1 1 0 0 0 1 1 1 0 3 1 0 0 3 0 0 15 0 1613.7243 Q9NY61 Q9NY61 202 216 AATF Protein AATF yes yes 2 7.7431E-26 143.42 5 1.2918 1.2878 6.5199 2 Median 1.2918 1.2878 6.5199 2 0 Median NaN NaN NaN 0 0 Median 16860000 7514700 9345500 16860000 7514700 9345500 0 0 0 10194 2080 10476 27050;27051;27052;27053;27054 42379;42380;42381;42382;42383;42384 42384 1914 6 NSELLVVSAR SQGSTLVHPFRALGKNSELLVVSAREDVAT RALGKNSELLVVSAREDVATWQQSSLSLRW K N S A R E 1 1 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 2 0 0 10 0 1086.6033 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 644 653 NOP14 Nucleolar protein 14 yes no 2 0.00031979 90.15 1 1.0488 1.121 NaN 1 Median 1.0488 1.121 NaN 1 0 Median NaN NaN NaN 0 0 Median 44906000 22492000 22414000 44906000 22492000 22414000 0 0 0 10195 790 10477 27055 42385 42385 1 NSEPAGLETPEAK GQPPLSQSSDSSPTRNSEPAGLETPEAKVL TRNSEPAGLETPEAKVLFDKVASQGEVVRK R N S A K V 2 0 1 0 0 0 3 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 13 0 1341.6412 P07814;V9GYZ6;Q3KQZ8;B4DKX5 P07814 890 902 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.00014979 88.441 1 2 3.164 3.5022 73.97 3 Plateau 3.164 3.5022 NaN 1 0 Median 1.2307 0.98231 13.018 2 0 Median 54395000 15731000 38665000 45602000 12172000 33430000 8794000 3559000 5234900 10196 1454 10478 27056;27057;27058 42386;42387;42388 42387 3 NSEPEEVIPSR PDPSKQKPMAKGPAKNSEPEEVIPSRLDIR GPAKNSEPEEVIPSRLDIRVGKIITVEKHP K N S S R L 0 1 1 0 0 0 3 0 0 1 0 0 0 0 2 2 0 0 0 1 0 0 11 0 1255.6044 A0A0S2Z4R1;P54577 A0A0S2Z4R1 357 367 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes no 2 0.0001538 94.804 2 3.3658 3.7587 NaN 1 Median 3.3658 3.7587 NaN 1 0 Median NaN NaN NaN 0 0 Median 57454000 9625600 47829000 57454000 9625600 47829000 0 0 0 10197 567 10479 27059;27060 42389;42390;42391 42390 3 NSGELEATSAFLASGQR KFNLDLSTVTQAFLKNSGELEATSAFLASG GELEATSAFLASGQRADGYPIWSRQDDIDL K N S Q R A 3 1 1 0 0 1 2 2 0 0 2 0 0 1 0 3 1 0 0 0 0 0 17 0 1736.8329 Q9NYB0 Q9NYB0 339 355 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 2 3.6911E-05 76.262 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11059000 11059000 0 11059000 11059000 0 0 0 0 10198 2082 10480 27061;27062 42392;42393 42393 2 NSGLVSITSR LGAGACGGVPIIFSRNSGLVSITSRENVSI IIFSRNSGLVSITSRENVSILAEDLEGSLA R N S S R E 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 3 1 0 0 1 0 0 10 0 1032.5564 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 451 460 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.00022517 78.655 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10199 1070 10481 27063 42394 42394 1 NSGPLGTEMNTGFSSEVK SPLRENSFGSPLEFRNSGPLGTEMNTGFSS PLGTEMNTGFSSEVKEDLNGPFLNQLETDP R N S V K E 0 0 2 0 0 0 2 3 0 0 1 1 1 1 1 3 2 0 0 1 0 0 18 0 1853.8465 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1335 1352 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 4.8416E-05 65.472 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6186000 0 6186000 6186000 0 6186000 0 0 0 10200 619 10482 27064;27065 42395;42396 42395 475 2 NSHCAQTVSSVFK QKLLRMLFDLLVNCKNSHCAQTVSSVFKGI CKNSHCAQTVSSVFKGISVNAEQVRIELEP K N S F K G 1 0 1 0 1 1 0 0 1 0 0 1 0 1 0 3 1 0 0 2 0 0 13 0 1463.6827 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8 B2RWN5 1140 1152 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2;3 2.6581E-16 128.68 3 2 1.0104 0.9137 22.243 4 Median 0.71927 0.73532 28.837 2 0 Median 1.2001 0.94739 3.2412 2 0 Median 46784000 23580000 23204000 37795000 19596000 18198000 8988900 3983500 5005400 10201 897 10483 27066;27067;27068;27069;27070 42397;42398;42399;42400;42401;42402;42403 42400 7 NSILDQYGK MNDRDPRLRERSLARNSILDQYGKILPRVH ERSLARNSILDQYGKILPRVHRKLAIERAK R N S G K I 0 0 1 1 0 1 0 1 0 1 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1036.5189 Q8WYP5;B3KVE5 Q8WYP5 994 1002 AHCTF1 Protein ELYS yes no 2 0.00048607 98.582 2 2.5019 2.0236 8.4847 2 Median NaN NaN NaN 0 0 Median 2.5019 2.0236 8.4847 2 0 Median 18314000 5513400 12801000 0 0 0 18314000 5513400 12801000 10202 1945 10484 27071;27072 42404;42405;42406;42407 42404 4 NSIPLQLPVEALQK CPQLQVLEVSTGINRNSIPLQLPVEALQKG RNSIPLQLPVEALQKGCPQLQVLRLLNLMW R N S Q K G 1 0 1 0 0 2 1 0 0 1 3 1 0 0 2 1 0 0 0 1 0 0 14 0 1548.8875 Q71RB6;Q8N531 Q71RB6 73 86 FBXL6 F-box/LRR-repeat protein 6 yes no 2 0.023552 32.946 2 1.5464 1.2214 12.072 2 Median NaN NaN NaN 0 0 Median 1.5464 1.2214 12.072 2 0 Median 7833300 3264800 4568400 0 0 0 7833300 3264800 4568400 10203 1867 10485 27073;27074 42408;42409;42410 42409 3 NSIQFTDGYEVK AMQTVGVHSIVQLHRNSIQFTDGYEVKEDI LHRNSIQFTDGYEVKEDIGVGSYSVCKRCI R N S V K E 0 0 1 1 0 1 1 1 0 1 0 1 0 1 0 1 1 0 1 1 0 0 12 0 1399.662 B4DKZ2;B4DG22;B7ZB17;P51812;Q7Z2J4 B4DKZ2 384 395 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.021729 50.452 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10204 971 10486 27075 42411 42411 1 NSITHGSFSGSLQGYPSSGAK TMLELLLRLKHLSLKNSITHGSFSGSLQGY SFSGSLQGYPSSGAKSLQSVSSISDLNFQN K N S A K S 1 0 1 0 0 1 0 4 1 1 1 1 0 1 1 6 1 0 1 0 0 0 21 0 2080.9814 Q13129;Q59GL0 Q13129 1074 1094 RLF Zinc finger protein Rlf yes no 3 0.015893 36.253 1 2 1.7197 1.3636 0.093638 2 Median NaN NaN NaN 0 0 Median 1.7197 1.3636 0.093638 2 0 Median 6173300 2305600 3867800 0 0 0 6173300 2305600 3867800 10205 1705 10487 27076;27077;27078 42412;42413;42414 42412 3 NSITSYFGAAGR LNNLADQELQLNHLKNSITSYFGAAGRIAC HLKNSITSYFGAAGRIACGEKYRVLARRVT K N S G R I 2 1 1 0 0 0 0 2 0 1 0 0 0 1 0 2 1 0 1 0 0 0 12 0 1242.5993 Q9Y483;Q96G26;B4DZG1 Q9Y483 550 561 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.00022516 83.862 2 1.2102 1.2805 0.84178 2 Median 1.2102 1.2805 0.84178 2 0 Median NaN NaN NaN 0 0 Median 55072000 25020000 30052000 55072000 25020000 30052000 0 0 0 10206 2143 10488 27079;27080 42415;42416 42416 1 NSLEDLTAEDFR PLHAMRKGLLDVLPKNSLEDLTAEDFRLLV LPKNSLEDLTAEDFRLLVNGCGEVNVQMLI K N S F R L 1 1 1 2 0 0 2 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 12 0 1408.647 E7EMW7;O95071;E7ET84;B3KML2 E7EMW7 2658 2669 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.00051216 88.155 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6226700 0 6226700 6226700 0 6226700 0 0 0 10207 1218 10489 27081;27082 42417;42418 42418 2 NSLEFFTMLAQR DARQVVLKYTVPGYRNSLEFFTMLAQRRGM GYRNSLEFFTMLAQRRGMHQKGGIPNVEGA R N S Q R R 1 1 1 0 0 1 1 0 0 0 2 0 1 2 0 1 1 0 0 0 0 0 12 0 1455.718 A0A024R2Z6 A0A024R2Z6 348 359 GNL3 yes yes 2 0.00015133 80.102 3 0.83269 0.69422 16.575 3 Median NaN NaN NaN 0 0 Median 0.83269 0.69422 16.575 3 0 Median 19082000 10488000 8594200 0 0 0 19082000 10488000 8594200 10208 125 10490;10491 27083;27084;27085 42419;42420;42421;42422;42423 42419 110 5 NSLEILLGSIGR ______________________________ NNKNSLEILLGSIGRSLPHITDVSWRLEYQ K N S G R S 0 1 1 0 0 0 1 2 0 2 3 0 0 0 0 2 0 0 0 0 0 0 12 0 1270.7245 R4GNF2;H0Y4E5;Q9UBI1 R4GNF2 4 15 COMMD3 COMM domain-containing protein 3 yes no 2 0.00016578 91.937 2 2.8574 3.0873 NaN 1 Median 2.8574 3.0873 NaN 1 0 Median NaN NaN NaN 0 0 Median 2468600 483670 1985000 2468600 483670 1985000 0 0 0 10209 1281 10492 27086;27087 42424;42425 42424 2 NSLESYAFNMK YKAEDEKQRDKVSSKNSLESYAFNMKATVE VSSKNSLESYAFNMKATVEDEKLQGKINDE K N S M K A 1 0 2 0 0 0 1 0 0 0 1 1 1 1 0 2 0 0 1 0 0 0 11 0 1302.5914 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96H53;E9PS65;Q96BE0;Q9NZ87;Q9NWW3;E9PM13 V9HW22 540 550 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 4.3707E-11 136.57 2 4 1.8014 1.4569 48.711 5 Median 1.8561 2.0424 1.7653 2 0 Median 0.98 0.7817 36.235 3 0 Median 111880000 43029000 68853000 97277000 37614000 59662000 14605000 5414600 9190300 10210 1467 10493;10494 27088;27089;27090;27091;27092;27093 42426;42427;42428;42429;42430;42431;42432;42433;42434 42427 1181 9 NSLISSLEEEVSILNR WKAQVARGRQEAERKNSLISSLEEEVSILN SLISSLEEEVSILNRQVLEKEGESKELKRL K N S N R Q 0 1 2 0 0 0 3 0 0 2 3 0 0 0 0 4 0 0 0 1 0 0 16 0 1801.9422 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1224 1239 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.7594E-24 138.42 2 0.78968 0.83664 2.4556 2 Median 0.78968 0.83664 2.4556 2 0 Median NaN NaN NaN 0 0 Median 58439000 31963000 26476000 58439000 31963000 26476000 0 0 0 10211 186;1747 10495 27094;27095 42435;42436;42437;42438;42439 42437 5 NSLLAGGDDDTMSVISGISSR SLRREDVWLPLMSYRNSLLAGGDDDTMSVI GDDDTMSVISGISSRGSTVRSKKSKPSTGK R N S S R G 1 1 1 3 0 0 0 3 0 2 2 0 1 0 0 5 1 0 0 1 0 0 21 0 2093.9899 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;Q6AI02;B4DQ46 B2R8Y6 977 997 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2;DKFZp686P168 Cohesin subunit SA-2 yes no 2 0.0002178 42.568 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3838500 0 3838500 3838500 0 3838500 0 0 0 10212 863 10496 27096;27097 42440;42441 42440 676 2 NSLLSLSDT YDTLNAWKQNLNKVKNSLLSLSDT______ NLNKVKNSLLSLSDT_______________ K N S D T - 0 0 1 1 0 0 0 0 0 0 3 0 0 0 0 3 1 0 0 0 0 0 9 0 948.47639 Q7L2H7 Q7L2H7 366 374 EIF3M Eukaryotic translation initiation factor 3 subunit M yes yes 1 0.0021945 86.833 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3953100 0 0 3953100 0 0 0 0 0 10213 1872 10497 27098 42442 42442 1 NSLPDALLPNLLDR DTPRGSWACSIFDLKNSLPDALLPNLLDRT KNSLPDALLPNLLDRTPNEEIDRQNDDQRK K N S D R T 1 1 2 2 0 0 0 0 0 0 5 0 0 0 2 1 0 0 0 0 0 0 14 0 1549.8464 Q96N67;A0A0C4DGY6;A0A1B0GVW2;A0A1B0GUE9 Q96N67 200 213 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.0014549 57.019 3 1.2293 1.2637 NaN 1 Median 1.2293 1.2637 NaN 1 0 Median NaN NaN NaN 0 0 Median 11767000 4668200 7098700 11767000 4668200 7098700 0 0 0 10214 1981 10498 27099;27100;27101 42443;42444;42445;42446 42444 4 NSLPDTVQIR LVPNNTTDQELQHIRNSLPDTVQIRRVEER LQHIRNSLPDTVQIRRVEERLSALGNVTTC R N S I R R 0 1 1 1 0 1 0 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 10 0 1141.6091 P56537;B7ZBH1 P56537 86 95 EIF6 Eukaryotic translation initiation factor 6 yes no 2 1.6847E-08 122.52 2 2 0.94446 0.95272 3.2024 4 Median 0.80868 0.93873 4.2393 2 0 Median 1.1053 0.95806 2.9393 2 0 Median 558710000 301440000 257270000 447400000 249740000 197670000 111310000 51707000 59605000 10215 1619 10499 27102;27103;27104;27105 42447;42448;42449;42450;42451;42452;42453;42454 42454 8 NSLQEQQEEEEEARK KLNLSSRIRQLEEEKNSLQEQQEEEEEARK NSLQEQQEEEEEARKNLEKQVLALQSQLAD K N S R K N 1 1 1 0 0 3 6 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 15 1 1845.8341 P35580 P35580 1346 1360 MYH10 Myosin-10 yes yes 3 0.0043271 48.323 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10216 1544 10500 27106 42455 42455 1 NSNLEIPDTLQELFAR EFVEKLKEKFSSALRNSNLEIPDTLQELFA SNLEIPDTLQELFARYRVLAIGDEKDQTRK R N S A R Y 1 1 2 1 0 1 2 0 0 1 3 0 0 1 1 1 1 0 0 0 0 0 16 0 1858.9425 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1384 1399 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 9.1615E-07 97.214 2 0.77912 0.80347 3.5342 2 Median 0.77912 0.80347 3.5342 2 0 Median NaN NaN NaN 0 0 Median 40985000 28478000 12507000 40985000 28478000 12507000 0 0 0 10217 1699 10501 27107;27108 42456;42457;42458 42458 3 NSNLVGAAHEELQQSR TYSAKLDNARQSAERNSNLVGAAHEELQQS SNLVGAAHEELQQSRIRIDSLSAQLSQLQK R N S S R I 2 1 2 0 0 2 2 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 16 0 1751.8551 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8 P02545 281 296 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 8.4918E-18 151.9 6 4 1.2711 1.3913 13.066 7 Median 1.205 1.3989 5.9041 3 0 Median 1.4154 1.1941 12.126 4 0 Median 1411900000 615100000 796760000 1273500000 554740000 718740000 138380000 60360000 78023000 10218 1440 10502 27109;27110;27111;27112;27113;27114;27115;27116;27117;27118 42459;42460;42461;42462;42463;42464;42465;42466;42467;42468;42469;42470;42471;42472;42473;42474 42459 16 NSNPALNDNLEK TAGLDIFAKFSAYIKNSNPALNDNLEKGLL YIKNSNPALNDNLEKGLLKALKVLDNYLTS K N S E K G 1 0 4 1 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 12 0 1327.6368 Q5SRT3;Q53FB0;O00299 Q5SRT3 120 131 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 9.2076E-18 140.78 2 2 2.3282 1.8458 45.55 3 Median 3.7787 3.9696 NaN 1 0 Median 2.2967 1.8052 3.1453 2 0 Median 61458000 9196400 52262000 54983000 7285900 47697000 6475100 1910500 4564500 10219 1362 10503 27119;27120;27121;27122 42475;42476;42477;42478 42475 4 NSNVDSSYLESLYQSCPR SGTWIQYGEEKDKRKNSNVDSSYLESLYQS VDSSYLESLYQSCPRGVVPFQAGSRNYELS K N S P R G 0 1 2 1 1 1 1 0 0 0 2 0 0 0 1 5 0 0 2 1 0 0 18 0 2117.9324 Q7Z2W4;C9J6P4;Q05DV5;H7C5K1 Q7Z2W4 630 647 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 1.4788E-16 119.32 2 2 1.0712 0.98442 10.029 3 Median 1.0712 1.068 NaN 1 0 Median 1.0915 0.92803 8.3425 2 0 Median 22270000 8637300 13633000 13094000 4633100 8460800 9176400 4004300 5172200 10220 1873 10504 27123;27124;27125;27126 42479;42480;42481;42482;42483;42484;42485;42486;42487;42488 42482 10 NSNYADQFNIPTNITTK KRRVTWCLGKINKMKNSNYADQFNIPTNIT NYADQFNIPTNITTKTHKLSINLLREIDES K N S T K T 1 0 4 1 0 1 0 0 0 2 0 1 0 1 1 1 3 0 1 0 0 0 17 0 1939.9276 A0A087X0P0;Q02224;D6RBW0 A0A087X0P0 433 449 CENPE Kinesin-like protein;Centromere-associated protein E yes no 2 0.023006 24.191 1 1.3729 1.1127 NaN 1 Median NaN NaN NaN 0 0 Median 1.3729 1.1127 NaN 1 0 Median 2956200 1273900 1682300 0 0 0 2956200 1273900 1682300 10221 445 10505 27127 42489 42489 1 NSPQEEVELK LGIQDGCRVMLIGKKNSPQEEVELKKLKHL LIGKKNSPQEEVELKKLKHLEKSVEKIADQ K N S L K K 0 0 1 0 0 1 3 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 10 0 1171.5721 A0A0S2Z3K4;J3QTA2;Q99933;A0A0U1RR89;C9JYK5 A0A0S2Z3K4 151 160 BAG1 BAG family molecular chaperone regulator 1 yes no 2 7.8452E-05 98.044 1 0.63447 0.67638 NaN 1 Median 0.63447 0.67638 NaN 1 0 Median NaN NaN NaN 0 0 Median 20854000 10231000 10623000 20854000 10231000 10623000 0 0 0 10222 551 10506 27128 42490 42490 1 NSPVEAVFSYLTGK TATPQIEEEVSLTQKNSPVEAVFSYLTGKR KNSPVEAVFSYLTGKRISEACSLAQQSGDH K N S G K R 1 0 1 0 0 0 1 1 0 0 1 1 0 1 1 2 1 0 1 2 0 0 14 0 1510.7668 P52948;H7C3P6 P52948 1328 1341 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.00011216 83.182 2 1.3212 1.3415 2.3227 2 Median 1.3212 1.3415 2.3227 2 0 Median NaN NaN NaN 0 0 Median 26085000 10996000 15089000 26085000 10996000 15089000 0 0 0 10223 1603 10507 27129;27130 42491;42492;42493;42494 42492 4 NSQFAGGPLGNPNTTAK SVLQELKGLQEFLDRNSQFAGGPLGNPNTT QFAGGPLGNPNTTAKVQQRLIGFMRPENGN R N S A K V 2 0 3 0 0 1 0 3 0 0 1 1 0 1 2 1 2 0 0 0 0 0 17 0 1672.8169 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 686 702 NUP155 Nuclear pore complex protein Nup155 yes no 2 1.8659E-12 113.69 2 1 1.5403 1.6461 26.04 3 Plateau 1.5201 1.5904 7.542 2 0 Median 1.3057 1.0228 NaN 1 0 Median 67673000 26133000 41540000 65598000 25220000 40378000 2075700 913400 1162300 10224 39 10508 27131;27132;27133 42495;42496;42497;42498;42499;42500;42501;42502 42496 8 NSQLFAASQK TSPKALVIGKDHESKNSQLFAASQKFRKNT DHESKNSQLFAASQKFRKNTAPSLSSRKNM K N S Q K F 2 0 1 0 0 2 0 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 10 0 1092.5564 Q9Y232 Q9Y232 163 172 CDYL Chromodomain Y-like protein yes yes 2 0.00682 68.557 1 1 1.4779 1.3246 8.2915 2 Median 1.3783 1.4045 NaN 1 0 Median 1.5847 1.2491 NaN 1 0 Median 23794000 12310000 11484000 17928000 10235000 7692900 5866100 2075200 3790900 10225 2121 10509 27134;27135 42503;42504;42505 42503 3 NSQLGIFSSSEK KVSLFGKRTSGHGSRNSQLGIFSSSEKIKD GSRNSQLGIFSSSEKIKDPRPLNDKAFIQQ R N S E K I 0 0 1 0 0 1 1 1 0 1 1 1 0 1 0 4 0 0 0 0 0 0 12 0 1295.6357 A8K031;O14777;Q05DQ6 A8K031 68 79 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 1.2145E-05 107.06 1 0.603 0.60194 NaN 1 Median 0.603 0.60194 NaN 1 0 Median NaN NaN NaN 0 0 Median 14329000 9106100 5223300 14329000 9106100 5223300 0 0 0 10226 696 10510 27136 42506 42506 1 NSSAFSYQR PTFSVIESHPGTLLRNSSAFSYQRQTSNRS PGTLLRNSSAFSYQRQTSNRSEPSGEINID R N S Q R Q 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 9 0 1058.4781 P42695;G3V1A9;E9PKK4 P42695 506 514 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.024033 48.423 1 2 1.2575 1.1818 32.104 2 Median 0.92061 0.94182 NaN 1 0 Median 1.7175 1.483 NaN 1 0 Median 34983000 16991000 17992000 26338000 15505000 10833000 8644800 1486300 7158500 10227 1565 10511 27137;27138;27139 42507;42508;42509;42510 42507 4 NSSLLEPQK MKEKVLRDKQEQPSRNSSLLEPQKSGNNET QEQPSRNSSLLEPQKSGNNETFTPNRVEKK R N S Q K S 0 0 1 0 0 1 1 0 0 0 2 1 0 0 1 2 0 0 0 0 0 0 9 0 1014.5346 Q6P0N0;G5E9K5;C9J2Q8 Q6P0N0 133 141 MIS18BP1 Mis18-binding protein 1 yes no 2 0.039237 50.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10228 1849 10512 27140 42511 42511 1 NSSQFFQSYVER YKKKYSDADIEPFLKNSSQFFQSYVERGLR FLKNSSQFFQSYVERGLRVIEMEREGKGRI K N S E R G 0 1 1 0 0 2 1 0 0 0 0 0 0 2 0 3 0 0 1 1 0 0 12 0 1490.679 Q14008;Q8IYN5;H0YDX5 Q14008 1871 1882 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.0013223 61.435 1 1 1.142 1.1374 NaN 1 Median 1.142 1.1374 NaN 1 0 Median NaN NaN NaN 0 0 Median 10275000 4628800 5645700 8605100 4628800 3976300 1669400 0 1669400 10229 1725 10513 27141;27142 42512;42513 42512 2 NSSTIIQNPVETPK STDNQRQQQLNDVVKNSSTIIQNPVETPKK KNSSTIIQNPVETPKKDYSLLPLLAAAPQV K N S P K K 0 0 2 0 0 1 1 0 0 2 0 1 0 0 2 2 2 0 0 1 0 0 14 0 1526.794 P38432 P38432 445 458 COIL Coilin yes yes 2 2.2927E-14 130.56 1 2 0.78937 0.63862 17.962 3 Median 0.86514 0.86362 NaN 1 0 Median 0.7801 0.63295 1.2602 2 0 Median 19642000 9843000 9798500 14381000 6912800 7468300 5260400 2930200 2330200 10230 1552 10514 27143;27144;27145 42514;42515;42516;42517 42514 4 NSSVLEQSFLR AVDEMFSSSYITAIKNSSVLEQSFLRAILA TAIKNSSVLEQSFLRAILAEFRRSGLEEAT K N S L R A 0 1 1 0 0 1 1 0 0 0 2 0 0 1 0 3 0 0 0 1 0 0 11 0 1278.6568 B7Z8H0;Q96F82;Q13415;A8K794 B7Z8H0 764 774 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 6.6381E-09 114.4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10231 1103 10515 27146;27147 42518;42519 42519 2 NSSYFVEWIPNNVK SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT KNSSYFVEWIPNNVKTAVCDIPPRGLKMAV K N S V K T 0 0 3 0 0 0 1 0 0 1 0 1 0 1 1 2 0 1 1 2 0 0 14 0 1695.8257 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCT2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2;P04350;B4DE77;B4DJ43;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 Q5JP53 319 332 TUBB;TUBB2C;TUBB4B;TUBB2A;TUBB2B;DKFZp566F223;TUBB4A;TUBB3;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 6.0237E-47 185.25 2 2 1.5041 1.7851 28.907 4 Linear 1.4618 1.6797 2.2259 2 0 Median 1.1983 1.0228 6.4162 2 0 Median 528720000 218440000 310270000 377090000 149480000 227610000 151620000 68960000 82660000 10232 1452;1660;1723;1441;2004;502 10516 27148;27149;27150;27151 42520;42521;42522;42523;42524;42525;42526;42527;42528 42523 9 NSSYVHGGLDSNGK LLNQAPDMLHRFYGKNSSYVHGGLDSNGKP KNSSYVHGGLDSNGKPADAVYGQKEIHRKV K N S G K P 0 0 2 1 0 0 0 3 1 0 1 1 0 0 0 3 0 0 1 1 0 0 14 0 1433.6535 Q6FI03;Q5U0Q1;Q13283;Q6ZP53;Q53HH4;Q32P45;E5RI46;E5RIF8;E5RH42;E5RIZ6;E5RJU8 Q6FI03 37 50 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2 1.4395E-29 154.36 2 2.4863 2.5292 4.7478 2 Median 2.4863 2.5292 4.7478 2 0 Median NaN NaN NaN 0 0 Median 18744000 5957000 12787000 18744000 5957000 12787000 0 0 0 10233 1710 10517 27152;27153 42529;42530 42529 2 NSTADISIGEEEREDFDTSIESK KMKEKQEKLKEDEQRNSTADISIGEEERED GEEEREDFDTSIESKDTEQKELDQDMVTED R N S S K D 1 1 1 3 0 0 5 1 0 3 0 1 0 1 0 4 2 0 0 0 0 0 23 1 2571.146 D3DS96;Q9NRL2;Q59G54;A0A087WWN7 D3DS96 695 717 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 3 0.0078549 33.348 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3764300 0 3764300 0 0 0 3764300 0 3764300 10234 1187 10518 27154 42531 42531 1 NSTECTLILTEGDSAK KGIPKLDDANDAGGRNSTECTLILTEGDSA STECTLILTEGDSAKTLAVSGLGVVGRDKY R N S A K T 1 0 1 1 1 0 2 1 0 1 2 1 0 0 0 2 3 0 0 0 0 0 16 0 1737.8091 P11388 P11388 451 466 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.2605E-110 236.28 2 2 0.99071 1.0019 18.717 4 Median 0.73015 0.86146 1.0172 2 0 Median 1.3614 1.1884 3.8154 2 0 Median 1353600000 701910000 651700000 865200000 493470000 371730000 488410000 208450000 279960000 10235 1471 10519 27155;27156;27157;27158 42532;42533;42534;42535;42536;42537;42538;42539;42540;42541;42542;42543;42544;42545;42546;42547;42548 42534 17 NSVCIIPLR QEHRLGRWWRIKEARNSVCIIPLRRVPVPP RIKEARNSVCIIPLRRVPVPPAAGS_____ R N S L R R 0 1 1 0 1 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 9 0 1070.5906 O43818 O43818 457 465 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 1.1693E-06 136.8 2 2 0.86106 0.85967 4.5095 4 Median 0.77086 0.88575 1.1637 2 0 Median 0.99242 0.82442 2.8565 2 0 Median 199960000 112640000 87327000 181320000 103140000 78189000 18639000 9501100 9138300 10236 1389 10520 27159;27160;27161;27162 42549;42550;42551;42552;42553;42554;42555 42549 7 NSVERPAEPVAGAATPSLVEQQK TVDDLPNRMCADVRRNSVERPAEPVAGAAT PVAGAATPSLVEQQKMLEELNKQIEEQKRQ R N S Q K M 4 1 1 0 0 2 3 1 0 0 1 1 0 0 3 2 1 0 0 3 0 0 23 1 2377.2238 Q9BTC0 Q9BTC0 1455 1477 DIDO1 Death-inducer obliterator 1 yes yes 3 4.3575E-08 56.488 2 1 1.0116 1.1212 35.453 3 Median 0.96438 1.0504 9.223 2 0 Median 2.2904 1.9209 NaN 1 0 Median 27568000 12875000 14693000 22369000 11173000 11196000 5199600 1702500 3497200 10237 2002 10521 27163;27164;27165 42556;42557;42558 42557 3 NSVEVALNK EKDFAAEVVHPGDLKNSVEVALNKLLDPIR HPGDLKNSVEVALNKLLDPIREKFNTPALK K N S N K L 1 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 972.52401 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 311 319 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.00061634 90.657 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19012000 0 19012000 19012000 0 19012000 0 0 0 10238 567 10522 27166;27167 42559;42560 42560 2 NSVLPQAFDR APHATPAGFYSSVNKNSVLPQAFDRFFDNA SSVNKNSVLPQAFDRFFDNAYCGGGDPPAE K N S D R F 1 1 1 1 0 1 0 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 10 0 1145.5829 O43248;J3KMZ0 O43248 144 153 HOXC11 Homeobox protein Hox-C11 yes no 2 0.0094867 67.207 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8647900 8647900 0 8647900 8647900 0 0 0 0 10239 1383 10523 27168 42561 42561 1 NSVPLSDALLNK NNPEDWLSLLLKLEKNSVPLSDALLNKLIG LEKNSVPLSDALLNKLIGRYSQAIEALPPD K N S N K L 1 0 2 1 0 0 0 0 0 0 3 1 0 0 1 2 0 0 0 1 0 0 12 0 1269.6929 P33981;D6RF82;D6REX1;D6RIC6 P33981 75 86 TTK Dual specificity protein kinase TTK yes no 2 0.041011 43.512 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5892800 0 5892800 5892800 0 5892800 0 0 0 10240 1539 10524 27169 42562 42562 1 NSVPVTVAMVER GEDGDRVPRGLKGKKNSVPVTVAMVERWKQ GKKNSVPVTVAMVERWKQAAKQRLTPKLFH K N S E R W 1 1 1 0 0 0 1 0 0 0 0 0 1 0 1 1 1 0 0 4 0 0 12 0 1300.6809 Q9Y3T9;B3KNC3 Q9Y3T9 145 156 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.022082 42.743 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10241 2139 10525 27170 42563 42563 1979 1 NSVQTPVENSTNSQHQVK PKELGCDRQSEEQMKNSVQTPVENSTNSQH QTPVENSTNSQHQVKEALPVSLPQIPCLSS K N S V K E 0 0 3 0 0 3 1 0 1 0 0 1 0 0 1 3 2 0 0 3 0 0 18 0 1995.961 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6;E9PJ60 Q8TDR3 548 565 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 2;3 0.00010951 47.915 3 1 1.8306 1.6971 28.109 2 Median 2.0379 2.0703 NaN 1 0 Median 1.6445 1.3912 NaN 1 0 Median 19453000 3983700 15470000 17935000 3304700 14630000 1518100 678950 839120 10242 1901 10526 27171;27172;27173;27174 42564;42565;42566;42567 42565 4 NSVSQISVLSGGK EGGTAAGAGLDSLHKNSVSQISVLSGGKAK HKNSVSQISVLSGGKAKCSQFCTTGMDGGM K N S G K A 0 0 1 0 0 1 0 2 0 1 1 1 0 0 0 4 0 0 0 2 0 0 13 0 1274.683 A4D275;O15143 A4D275 327 339 ARPC1B Actin-related protein 2/3 complex subunit 1B yes no 2 0.00028676 83.045 2 2.2038 2.2284 NaN 1 Median 2.2038 2.2284 NaN 1 0 Median NaN NaN NaN 0 0 Median 13120000 5833700 7286500 13120000 5833700 7286500 0 0 0 10243 670 10527 27175;27176 42568;42569 42569 2 NSVTGGTAAFEPSVDYCVVK VAAKLALGIPLPELRNSVTGGTAAFEPSVD GTAAFEPSVDYCVVKIPRWDLSKFLRVSTK R N S V K I 2 0 1 1 1 0 1 2 0 0 0 1 0 1 1 2 2 0 1 4 0 0 20 0 2099.9834 Q53SY7;F8VPD4;P27708 Q53SY7 646 665 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.018088 35.037 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7895600 7895600 0 7895600 7895600 0 0 0 0 10244 1259 10528 27177 42570 42570 1 NSVTPDMMEEMYK EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA IKNSVTPDMMEEMYKKAHAAIRENPVYEKK K N S Y K K 0 0 1 1 0 0 2 0 0 0 0 1 3 0 1 1 1 0 1 1 0 0 13 0 1573.6463 A2RUM7;P46777;B3KTM6 A2RUM7 229 241 RPL5 60S ribosomal protein L5 yes no 2 2.8666E-25 162.38 2 6.5541 7.3242 10.317 2 Median 6.5541 7.3242 10.317 2 0 Median NaN NaN NaN 0 0 Median 144950000 20202000 124750000 144950000 20202000 124750000 0 0 0 10245 653 10529 27178;27179 42571;42572;42573;42574 42573 508;509;510 4 NSYVAGQYDDAASYQR ATPEEKLKLEDFFARNSYVAGQYDDAASYQ SYVAGQYDDAASYQRLNSHMNALHLGSQAN R N S Q R L 3 1 1 2 0 2 0 1 0 0 0 0 0 0 0 2 0 0 3 1 0 0 16 0 1806.7809 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;Q0PHS1;E7EUI8;B4DYA7;E9PD92;E7EM57;Q0PHS5 Q2VF42 65 80 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 2.5432E-06 92.039 2 2.0477 2.0605 NaN 1 Median 2.0477 2.0605 NaN 1 0 Median NaN NaN NaN 0 0 Median 19015000 4556200 14458000 19015000 4556200 14458000 0 0 0 10246 775 10530 27180;27181 42575;42576;42577 42577 3 NTAAVLEAAQELLR VWPVLRERAGAPGARNTAAVLEAAQELLRN RNTAAVLEAAQELLRNRPISLGHVVVAPPG R N T L R N 4 1 1 0 0 1 2 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 14 0 1497.8151 Q9BVQ7 Q9BVQ7 127 140 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 8.1988E-10 122.33 2 0.94256 0.94071 13.737 2 Median 0.94256 0.94071 13.737 2 0 Median NaN NaN NaN 0 0 Median 15924000 7233700 8690100 15924000 7233700 8690100 0 0 0 10247 2009 10531 27182;27183 42578;42579;42580;42581 42581 4 NTAPDNGPILLQAQTTQR CTVKLWPLPKALLSKNTAPDNGPILLQAQT PDNGPILLQAQTTQRCHDKDINSVAIAPND K N T Q R C 2 1 2 1 0 3 0 1 0 1 2 0 0 0 2 0 3 0 0 0 0 0 18 0 1936.9967 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 459 476 TBL3 Transducin beta-like protein 3 no no 2 2.0772E-22 132.31 2 2 1.0579 1.0565 6.6877 4 Median 0.87417 0.99083 2.1682 2 0 Median 1.2926 1.1102 0.10638 2 0 Median 197510000 100760000 96747000 139580000 76070000 63515000 57921000 24689000 33233000 10248 1698;436 10532 27184;27185;27186;27187 42582;42583;42584;42585;42586;42587 42585 6 NTCEAVVLGTLHPR GLPGVAEKSRERLIRNTCEAVVLGTLHPRT RNTCEAVVLGTLHPRTSITVVLQVVSDAGS R N T P R T 1 1 1 0 1 0 1 1 1 0 2 0 0 0 1 0 2 0 0 2 0 0 14 0 1565.7984 Q9NQT4;M0R050;B2RC50 Q9NQT4 100 113 EXOSC5 Exosome complex component RRP46 yes no 2 0.00015593 87.001 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4775300 4775300 0 4775300 4775300 0 0 0 0 10249 2060 10533 27188 42588 42588 1 NTDEMVELR PAEDMEEEQAFKRSRNTDEMVELRILLQSK AFKRSRNTDEMVELRILLQSKNAGAVIGKG R N T L R I 0 1 1 1 0 0 2 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1105.5074 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2;S4R457 B4DUQ1 38 46 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 0.0059659 57.708 3 4.802 4.8488 NaN 1 Median 4.802 4.8488 NaN 1 0 Median NaN NaN NaN 0 0 Median 26849000 3373800 23475000 26849000 3373800 23475000 0 0 0 10250 102 10534 27189;27190;27191 42589;42590;42591;42592 42591 89 4 NTDNSEDSRAEDNFNLEK VASVFANADKGDDEKNTDNSEDSRAEDNFN NSEDSRAEDNFNLEKEKEDVPVEMSNGEPG K N T E K E 1 1 4 3 0 0 3 0 0 0 1 1 0 1 0 2 1 0 0 0 0 0 18 1 2096.8883 Q86U86;E7EVG2;Q9NUX9 Q86U86 1112 1129 PBRM1 Protein polybromo-1 yes no 3 0.0030407 45.876 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5404700 5404700 0 5404700 5404700 0 0 0 0 10251 1883 10535 27192 42593 42593 1 NTEIGFLQDALSK TRFEMKIIDISDVFRNTEIGFLQDALSKPH FRNTEIGFLQDALSKPHGTVKAICIPEGAK R N T S K P 1 0 1 1 0 1 1 1 0 1 2 1 0 1 0 1 1 0 0 0 0 0 13 0 1434.7355 A8K4A8;A0A024R8Z9;Q6PI48;Q9H9J7;Q9NVT8 A8K4A8 350 362 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.018503 48.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10252 266 10536 27193 42594 42594 1 NTELAVFHDETEIQNQTDLLSLSGK LLKLKSVVTSIFGVKNTELAVFHDETEIQN TEIQNQTDLLSLSGKTLCVTAGSAPSLINS K N T G K T 1 0 2 2 0 2 3 1 1 1 4 1 0 1 0 2 3 0 0 1 0 0 25 0 2801.3719 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;B4DVX2;Q7L4K8;Q9P1N9 Q59G75 1143 1167 IARS;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 3 5.4326E-14 85.376 2 2 0.7474 0.60674 9.1604 2 Median NaN NaN NaN 0 0 Median 0.7474 0.60674 9.1604 2 0 Median 45118000 11207000 33911000 24675000 0 24675000 20443000 11207000 9235800 10253 1561 10537 27194;27195;27196;27197 42595;42596;42597;42598;42599;42600 42598 6 NTENNDVEISETK GEKSQPQEKSLIGLKNTENNDVEISETKKA LKNTENNDVEISETKKADVQAPVSPSETSQ K N T T K K 0 0 3 1 0 0 3 0 0 1 0 1 0 0 0 1 2 0 0 1 0 0 13 0 1491.6689 Q5UIP0;H7C2B5 Q5UIP0 1751 1763 RIF1 Telomere-associated protein RIF1 yes no 2 0.0027984 66.262 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10254 1829 10538 27198 42601 42601 1 NTETALDNKPCGPQCYQHLEGAK CNYSFHATPNTYKRKNTETALDNKPCGPQC KPCGPQCYQHLEGAKEFAAALTAERIKTPP K N T A K E 2 0 2 1 2 2 2 2 1 0 2 2 0 0 2 0 2 0 1 0 0 0 23 1 2630.1853 A0A090N8E9;Q15910;F2YMM1;S4S3R8;Q75MP9;Q75MQ0;B7Z8K5 A0A090N8E9 315 337 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 3.9691E-11 87.156 2 2 1.3501 1.3499 29.575 4 Median 0.89632 1.0451 9.4914 2 0 Median 2.022 1.7193 7.5073 2 0 Median 55215000 25296000 29920000 38664000 19956000 18708000 16551000 5339400 11212000 10255 456 10539 27199;27200;27201;27202 42602;42603;42604;42605;42606;42607;42608;42609;42610 42607 9 NTGESASQLLDAETAER ESRISELTSELTDERNTGESASQLLDAETA GESASQLLDAETAERLRAEKEMKELQTQYD R N T E R L 3 1 1 1 0 1 3 1 0 0 2 0 0 0 0 2 2 0 0 0 0 0 17 0 1790.8282 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8;B4DZ32 A0A0D9SFK2 1302 1318 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 7.052E-05 69.716 3 1.4768 1.4852 NaN 1 Median 1.4768 1.4852 NaN 1 0 Median NaN NaN NaN 0 0 Median 12388000 6970900 5417200 12388000 6970900 5417200 0 0 0 10256 12 10540 27203;27204;27205 42611;42612;42613;42614;42615 42614 5 NTGIICTIGPASR HMCRLDIDSPPITARNTGIICTIGPASRSV ARNTGIICTIGPASRSVETLKEMIKSGMNV R N T S R S 1 1 1 0 1 0 0 2 0 3 0 0 0 0 1 1 2 0 0 0 0 0 13 0 1358.6976 V9HWB8;P14618;A0A024R5Z9;B4DNK4;H3BTN5;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13 V9HWB8 44 56 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 1.1651E-05 97.163 2 2 1.3636 1.1537 8.3156 2 Median NaN NaN NaN 0 0 Median 1.3636 1.1537 8.3156 2 0 Median 59567000 50449000 9117700 44670000 44670000 0 14897000 5779100 9117700 10257 1481 10541 27206;27207;27208;27209 42616;42617;42618;42619;42620 42618 5 NTGVILANDANAER CAPGGKTSYMAQLMKNTGVILANDANAERL KNTGVILANDANAERLKSVVGNLHRLGVTN K N T E R L 3 1 3 1 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1456.727 P46087 P46087 408 421 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 2.4933E-114 241.31 3 2 1.1244 1.2824 11.899 4 Linear 1.0804 1.2672 2.8597 2 0 Median 1.2054 1.0448 6.6362 2 0 Median 875870000 416670000 459210000 756900000 362610000 394290000 118970000 54055000 64917000 10258 1570 10542 27210;27211;27212;27213;27214 42621;42622;42623;42624;42625;42626;42627;42628;42629;42630 42622 10 NTHATTHNAYDLEVIDIFK DRDSEEAEIIRKYVKNTHATTHNAYDLEVI TTHNAYDLEVIDIFKIEREGECQRYKPFKQ K N T F K I 2 0 2 2 0 0 1 0 2 2 1 1 0 1 0 0 3 0 1 1 0 0 19 0 2201.0753 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 820 838 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 1.0892E-05 53.254 2 1.2606 1.02 2.0963 2 Median NaN NaN NaN 0 0 Median 1.2606 1.02 2.0963 2 0 Median 21008000 8852300 12155000 0 0 0 21008000 8852300 12155000 10259 139 10543 27215;27216 42631;42632 42631 2 NTIDINNFDGK VKLPHLWDAMVGPLRNTIDINNFDGKSLLD GPLRNTIDINNFDGKSLLDKGDSPAQELVN R N T G K S 0 0 3 2 0 0 0 1 0 2 0 1 0 1 0 0 1 0 0 0 0 0 11 0 1249.5939 Q2M1V9;A0A0A0MTH9;O14981 Q2M1V9 1059 1069 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.0068025 53.751 1 1.1138 1.1258 NaN 1 Median 1.1138 1.1258 NaN 1 0 Median NaN NaN NaN 0 0 Median 6901600 2932300 3969300 6901600 2932300 3969300 0 0 0 10260 488 10544 27217 42633 42633 1 NTIEMQAITALAHLR VVDTPGILDHPLEDRNTIEMQAITALAHLR NTIEMQAITALAHLRAAVLYVMDLSEQCGH R N T L R A 3 1 1 0 0 1 1 0 1 2 2 0 1 0 0 0 2 0 0 0 0 0 15 0 1680.8981 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 232 246 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2;3 3.0531E-16 135.14 5 7 1.6612 1.4166 29.982 11 Median 1.6269 1.8795 11.915 4 0 Median 1.6612 1.3845 24.704 7 0 Median 466210000 179290000 286920000 380910000 140970000 239940000 85299000 38315000 46984000 10261 1183 10545;10546 27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229 42634;42635;42636;42637;42638;42639;42640;42641;42642;42643;42644;42645;42646;42647;42648;42649;42650;42651;42652;42653 42640 898 20 NTLCAPEVISLINTR YLHGDDHQDSDEFCRNTLCAPEVISLINTR NTLCAPEVISLINTRMLFWACSTNKPEGYR R N T T R M 1 1 2 0 1 0 1 0 0 2 2 0 0 0 1 1 2 0 0 1 0 0 15 0 1699.8927 Q96CS3 Q96CS3 191 205 FAF2 FAS-associated factor 2 yes yes 2 4.9248E-07 102.62 2 1.3434 1.3335 3.8639 2 Median 1.3434 1.3335 3.8639 2 0 Median NaN NaN NaN 0 0 Median 23710000 10074000 13636000 23710000 10074000 13636000 0 0 0 10262 1961 10547 27230;27231 42654;42655 42655 2 NTLQLHR HHTIGGSRRAAWRRRNTLQLHRYR______ RRAAWRRRNTLQLHRYR_____________ R N T H R Y 0 1 1 0 0 1 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 880.4879 A0A024R2Q4;P61313;B4DLP4 A0A024R2Q4 196 202 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 1.4873E-06 152.34 2 1 0.91577 1.0791 25.708 3 Plateau 0.90406 1.0687 1.3751 2 0 Median 0.78475 0.68486 NaN 1 0 Median 1802100000 968030000 834040000 1728700000 929050000 799660000 73361000 38982000 34379000 10263 121 10548 27232;27233;27234 42656;42657;42658;42659;42660 42658 5 NTLTQTTENLR TRENRSLSEEIKRLKNTLTQTTENLRRVEE KRLKNTLTQTTENLRRVEEDIQQQKATGSE K N T L R R 0 1 2 0 0 1 1 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 11 0 1289.6575 P15924 P15924 1414 1424 DSP Desmoplakin yes yes 2 0.0071503 53.124 1 1.1354 0.98424 NaN 1 Median NaN NaN NaN 0 0 Median 1.1354 0.98424 NaN 1 0 Median 2497000 1341700 1155300 0 0 0 2497000 1341700 1155300 10264 1486 10549 27235 42661 42661 1 NTMEALPACLLR AKDTRYSSSFCTHDRNTMEALPACLLRDVA HDRNTMEALPACLLRDVAQEALGVAVIGID R N T L R D 2 1 1 0 1 0 1 0 0 0 3 0 1 0 1 0 1 0 0 0 0 0 12 0 1387.6952 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3;K7ES52;K7ERJ1 B5BUF9 71 82 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2 0.0016657 56.043 1 1.5512 1.6243 NaN 1 Median 1.5512 1.6243 NaN 1 0 Median NaN NaN NaN 0 0 Median 10868000 3920800 6946800 10868000 3920800 6946800 0 0 0 10265 252 10550 27236 42662 42662 190 1 NTNAAEESLPEIQK AELKSLEDKAAEVVKNTNAAEESLPEIQKE KNTNAAEESLPEIQKEHRNLLQELKVIQEN K N T Q K E 2 0 2 0 0 1 3 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 14 0 1542.7526 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 975 988 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.7779E-57 196.24 2 2 1.1932 1.1995 22.334 4 Median 0.84416 0.9976 0.34899 2 0 Median 1.6999 1.4673 2.7891 2 0 Median 1422500000 718840000 703660000 1150800000 616850000 533990000 271670000 102000000 169670000 10266 2070 10551 27237;27238;27239;27240 42663;42664;42665;42666;42667;42668;42669;42670;42671 42665 9 NTNPNFVR QLYKEQLAKLMATLRNTNPNFVRCIIPNHE KLMATLRNTNPNFVRCIIPNHEKKAGKLDP R N T V R C 0 1 3 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 8 0 960.47773 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;P35580 A0A024R1N1 663 670 MYH9;MYH10 Myosin-9;Myosin-10 no no 2 0.0071545 83.377 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9268500 0 9268500 0 0 0 9268500 0 9268500 10267 81;1544 10552 27241 42672 42672 1 NTPHFNR YKAVADRLLEMTSRKNTPHFNRKRLSKLIK LLEMTSRKNTPHFNRKRLSKLIKKFQDLSE K N T N R K 0 1 2 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 7 0 884.4253 Q14684;Q6PJM8 Q14684 315 321 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 0.034046 62.978 1 1.1113 1.1436 NaN 1 Median 1.1113 1.1436 NaN 1 0 Median NaN NaN NaN 0 0 Median 19636000 8802800 10833000 19636000 8802800 10833000 0 0 0 10268 1740 10553 27242 42673 42673 1 NTPLLGQALTIASK SQTPYAFTSSSMLRRNTPLLGQALTIASKH RNTPLLGQALTIASKHHQIVKMDLRSRYLD R N T S K H 2 0 1 0 0 1 0 1 0 1 3 1 0 0 1 1 2 0 0 0 0 0 14 0 1425.8191 Q96H22;H3BRU7 Q96H22 171 184 CENPN Centromere protein N yes no 2 0.0019255 50.207 1 2 1.0832 0.86072 9.2705 3 Median 0.76862 0.77237 NaN 1 0 Median 1.1118 0.89414 5.3861 2 0 Median 29785000 16502000 13284000 15990000 9361400 6628300 13796000 7140200 6655400 10269 1970 10554 27243;27244;27245 42674;42675;42676;42677;42678 42675 5 NTSEESSLLTSELR KLIVPSPDVLKAGNKNTSEESSLLTSELRS KNTSEESSLLTSELRSKREQYKQAFPSQLK K N T L R S 0 1 1 0 0 0 3 0 0 0 3 0 0 0 0 4 2 0 0 0 0 0 14 0 1564.758 Q9UIF8;Q3B7K5;A0A0A0MR97 Q9UIF8 415 428 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B yes no 2 0.00014695 87.363 2 3 1.1677 1.0091 NaN 1 Median NaN NaN NaN 0 0 Median 1.1677 1.0091 NaN 1 0 Median 8966200 6107600 2858600 4741400 4741400 0 4224800 1366200 2858600 10270 2102 10555 27246;27247;27248;27249;27250 42679;42680;42681;42682;42683;42684;42685 42680 7 NTSELVSSEVYLLSALAALQK PQLPSLMPSLLTTMKNTSELVSSEVYLLSA SSEVYLLSALAALQKVVETLPHFISPYLEG K N T Q K V 3 0 1 0 0 1 2 0 0 0 5 1 0 0 0 4 1 0 1 2 0 0 21 0 2235.1998 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1746 1766 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 4.534E-30 124.16 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5138100 0 5138100 5138100 0 5138100 0 0 0 10271 897 10556 27251 42686 42686 1 NTSEQDQPMGGWEMIR CIEEIDVDGKFIRLKNTSEQDQPMGGWEMI TSEQDQPMGGWEMIRKIGDTSVSYKYTSRY K N T I R K 0 1 1 1 0 2 2 2 0 1 0 0 2 0 1 1 1 1 0 0 0 0 16 0 1877.8036 P20700;B4DZT3 P20700 458 473 LMNB1 Lamin-B1 yes no 2 1.7816E-07 99.844 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10272 1502 10557 27252 42687 42687 1262;1263 1 NTTGSTIAEIR AIKGTMTEIYNDLSKNTTGSTIAEIRRLRI DLSKNTTGSTIAEIRRLRIEIEKLQWLHQQ K N T I R R 1 1 1 0 0 0 1 1 0 2 0 0 0 0 0 1 3 0 0 0 0 0 11 0 1161.599 H7C4X9;A0A087WYS3;Q9ULU4 H7C4X9 832 842 ZMYND8 Protein kinase C-binding protein 1 yes no 2 0.00045221 77.379 2 2 1.3774 1.3528 40.204 4 Median 0.87115 0.92201 58.046 2 0 Median 1.5831 1.3528 3.1992 2 0 Median 125960000 59303000 66658000 120300000 57224000 63076000 5661800 2079300 3582600 10273 1317 10558 27253;27254;27255;27256 42688;42689;42690;42691;42692 42688 5 NTTGVTEEALK GMRMQHNLEQQIQARNTTGVTEEALKEFSM IQARNTTGVTEEALKEFSMMFKHFDKDKSG R N T L K E 1 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 3 0 0 1 0 0 11 0 1161.5877 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 2301 2311 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0071503 53.124 2 1.5399 1.598 2.9495 2 Median 1.5399 1.598 2.9495 2 0 Median NaN NaN NaN 0 0 Median 46003000 16731000 29272000 46003000 16731000 29272000 0 0 0 10274 523 10559 27257;27258 42693;42694;42695 42695 3 NTTQNTGYSSGTQNANYPVR SIGPGLPKNSRPTRRNTTQNTGYSSGTQNA TGYSSGTQNANYPVRAAPPPPGYHQNGVIR R N T V R A 1 1 4 0 0 2 0 2 0 0 0 0 0 0 1 2 4 0 2 1 0 0 20 0 2171.9832 Q4KMR3;Q12965 Q4KMR3 934 953 MYO1E Unconventional myosin-Ie yes no 2 1.16E-12 101.62 2 0.98014 0.99158 5.645 2 Median 0.98014 0.99158 5.645 2 0 Median NaN NaN NaN 0 0 Median 37765000 17611000 20153000 37765000 17611000 20153000 0 0 0 10275 1703 10560 27259;27260 42696;42697;42698;42699;42700;42701 42700 6 NTTWEDVGLWDPSLTK IEDFKQFEPNDFYLKNTTWEDVGLWDPSLT TTWEDVGLWDPSLTKNQDYRTKPFCCSACP K N T T K N 0 0 1 2 0 0 1 1 0 0 2 1 0 0 1 1 3 2 0 1 0 0 16 0 1860.8894 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 50 65 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00024466 65.295 1 2 2.0146 1.6192 2.3727 2 Median NaN NaN NaN 0 0 Median 2.0146 1.6192 2.3727 2 0 Median 18562000 11150000 7411800 7797800 7797800 0 10764000 3352700 7411800 10276 878 10561 27261;27262;27263 42702;42703;42704 42703 3 NTVANSPQTLLAGMNK YLADRVIVFDGVPSKNTVANSPQTLLAGMN TVANSPQTLLAGMNKFLSQLEITFRRDPNN K N T N K F 2 0 3 0 0 1 0 1 0 0 2 1 1 0 1 1 2 0 0 1 0 0 16 0 1657.8458 P61221 P61221 542 557 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 2 0.00030349 75.479 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10277 1628 10562 27264 42705 42705 1412 1 NTVEITELPVR QNQYAVSGEIFVVDRNTVEITELPVRTWTQ VVDRNTVEITELPVRTWTQVYKEQVLEPML R N T V R T 0 1 1 0 0 0 2 0 0 1 1 0 0 0 1 0 2 0 0 2 0 0 11 0 1269.6929 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 912 922 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 6.8436E-08 114.5 3 2 0.98056 0.82118 15.228 3 Median 0.57037 0.66138 NaN 1 0 Median 0.99868 0.85358 5.4725 2 0 Median 275740000 136170000 139570000 223570000 108950000 114630000 52168000 27222000 24946000 10278 1679 10563 27265;27266;27267;27268;27269 42706;42707;42708;42709;42710;42711 42711 6 NTVGNVPLEWYDDFPHVGYDLDGR GDEYAEDSSDEEDIRNTVGNVPLEWYDDFP WYDDFPHVGYDLDGRRIYKPLRTRDELDQF R N T G R R 0 1 2 4 0 0 1 3 1 0 2 0 0 1 2 0 1 1 2 3 0 0 24 0 2777.2722 Q14137;B2RDN4;A8K3R2;B4DEN9;A0A075B729 Q14137 134 157 BOP1 Ribosome biogenesis protein BOP1 yes no 3 4.4597E-09 49.871 2 2 0.90807 0.81573 22.188 4 Median 0.68652 0.68202 6.9075 2 0 Median 1.2029 0.98601 8.3989 2 0 Median 45119000 23686000 21433000 23583000 13814000 9769000 21536000 9872400 11664000 10279 1726 10564 27270;27271;27272;27273 42712;42713;42714;42715;42716;42717;42718;42719;42720;42721 42712 10 NTVLATWQPYTTSK SFDLLKAVCLEFSPKNTVLATWQPYTTSKD KNTVLATWQPYTTSKDGTAGIPNLQLYDVK K N T S K D 1 0 1 0 0 1 0 0 0 0 1 1 0 0 1 1 4 1 1 1 0 0 14 0 1608.8148 Q9BY44;C9IZE1;F8WAE5;H7C5Q3 Q9BY44 87 100 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 2 0.0017963 69.451 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10280 2017 10565 27274 42722 42722 1 NTVLQQHLETLR AVEKLEVDVIQERSRNTVLQQHLETLRQVL RSRNTVLQQHLETLRQVLTSSFASMPLPGS R N T L R Q 0 1 1 0 0 2 1 0 1 0 3 0 0 0 0 0 2 0 0 1 0 0 12 0 1450.7892 B4DMG1;Q9NP66;H0YKL0 B4DMG1 165 176 HMG20A High mobility group protein 20A yes no 2;3 6.3255E-05 115 5 2 0.9186 0.85338 15.791 5 Median 0.9186 0.92083 16.221 3 0 Median 0.93811 0.79651 9.7532 2 0 Median 61053000 34961000 26091000 55139000 32023000 23116000 5913400 2938500 2974900 10281 1005 10566 27275;27276;27277;27278;27279;27280;27281 42723;42724;42725;42726;42727;42728;42729;42730;42731;42732 42727 10 NTVVATGGYGR ALCIEDGSIHRIRAKNTVVATGGYGRTYFS IRAKNTVVATGGYGRTYFSCTSAHTSTGDG K N T G R T 1 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 2 0 1 2 0 0 11 0 1093.5516 D6RFM5;A0A024QZ30;B4DYN5;P31040;Q0QF12;B3KT34 D6RFM5 251 261 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 0.00034479 105.4 2 0.86753 0.95819 NaN 1 Median 0.86753 0.95819 NaN 1 0 Median NaN NaN NaN 0 0 Median 52671000 32765000 19907000 52671000 32765000 19907000 0 0 0 10282 10 10567 27282;27283 42733;42734 42734 2 NTVVLFVPQQEAWVVER ASGRAPRRASSGLPRNTVVLFVPQQEAWVV VVLFVPQQEAWVVERMGRFHRILEPGLNIL R N T E R M 1 1 1 0 0 2 2 0 0 0 1 0 0 1 1 0 1 1 0 5 0 0 17 0 2013.0684 Q9UJZ1 Q9UJZ1 35 51 STOML2 Stomatin-like protein 2, mitochondrial yes yes 2 0.00012158 57.802 1 0.90102 0.90039 NaN 1 Median 0.90102 0.90039 NaN 1 0 Median NaN NaN NaN 0 0 Median 9035600 5365800 3669900 9035600 5365800 3669900 0 0 0 10283 2104 10568 27284 42735 42735 1 NTWLYQALR TADSTICHILNLYRRNTWLYQALREGTRVQ LNLYRRNTWLYQALREGTRVQSVEQIREVA R N T L R E 1 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 9 0 1163.6087 Q5SQP8;P56545;A0A087WYL1 Q5SQP8 217 225 CTBP2 C-terminal-binding protein 2 yes no 2 0.030931 52.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10284 1620 10569 27285 42736 42736 1 NTYQGFNGMDR ______________________________ SACRNTYQGFNGMDRDYGPGSYGGMDRDYG R N T D R D 0 1 2 1 0 1 0 2 0 0 0 0 1 1 0 0 1 0 1 0 0 0 11 0 1301.5459 Q5BKZ1;A0A0A0MRN4;E2QRN4 Q5BKZ1 14 24 ZNF326 DBIRD complex subunit ZNF326 yes no 2 0.010154 43.512 1 1.551 1.5526 NaN 1 Median 1.551 1.5526 NaN 1 0 Median NaN NaN NaN 0 0 Median 6855600 2859900 3995700 6855600 2859900 3995700 0 0 0 10285 1804 10570 27286 42737 42737 1672 1 NVAEALGHSPK SAETPGVPSPIAALKNVAEALGHSPKDPGG AALKNVAEALGHSPKDPGGGGGPVRAGGAS K N V P K D 2 0 1 0 0 0 1 1 1 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1121.5829 B2RCD8;Q8IU81 B2RCD8 428 438 IRF2BP1 Interferon regulatory factor 2-binding protein 1 yes no 2 0.0056298 64.654 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11532000 0 11532000 11532000 0 11532000 0 0 0 10286 882 10571 27287 42738 42738 1 NVAIFTAGQESPIILR NFPTSSIAFLGQNERNVAIFTAGQESPIIL VAIFTAGQESPIILRDGNGTIYPMAKDCMG R N V L R D 2 1 1 0 0 1 1 1 0 3 1 0 0 1 1 1 1 0 0 1 0 0 16 0 1727.957 E7EMW7;O95071 E7EMW7 792 807 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.000279 56.205 1 2 0.93372 0.83119 23.081 3 Median 1.0771 1.0683 NaN 1 0 Median 0.85118 0.74834 14.85 2 0 Median 12535000 5580100 6954400 8257500 3419900 4837600 4277100 2160300 2116800 10287 1218 10572 27288;27289;27290 42739;42740;42741;42742 42739 4 NVALLSQLYHSPAR EPITVKFAANPNQNKNVALLSQLYHSPARR KNVALLSQLYHSPARRFGGPVHHQAQRFRF K N V A R R 2 1 1 0 0 1 0 0 1 0 3 0 0 0 1 2 0 0 1 1 0 0 14 0 1567.8471 Q15717 Q15717 192 205 ELAVL1 ELAV-like protein 1 yes yes 2 6.5573E-15 121.04 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29110000 0 29110000 29110000 0 29110000 0 0 0 10288 1764 10573 27291;27292;27293 42743;42744;42745 42745 3 NVASVCLQIGYPTVASVPHSIINGYK ITEETLHSRFLEGVRNVASVCLQIGYPTVA PTVASVPHSIINGYKRVLALSVETDYTFPL R N V Y K R 2 0 2 0 1 1 0 2 1 3 1 1 0 0 2 3 1 0 2 4 0 0 26 0 2786.4425 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;F8VW21;F8VZS0;B4E3D5;F8W1K8;Q3MHV2 Q53HW2 221 246 RPLP0 60S acidic ribosomal protein P0 yes no 3 1.2385E-13 77.053 2 2 0.84632 0.73423 18.201 4 Median 0.85864 0.86077 19.295 2 0 Median 0.84632 0.6793 7.8052 2 0 Median 69938000 36921000 33017000 47354000 24492000 22862000 22584000 12429000 10155000 10289 345 10574 27294;27295;27296;27297 42746;42747;42748;42749;42750;42751 42747 6 NVDEAINFINER QEEIFGPILPIVPVKNVDEAINFINEREKP PVKNVDEAINFINEREKPLALYVFSHNHKV K N V E R E 1 1 3 1 0 0 2 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 12 0 1432.6947 J3QRD1;Q59H65;P51648;Q68D64;J3KTD9;I3L2W1 J3QRD1 344 355 ALDH3A2;DKFZp686E23276 Fatty aldehyde dehydrogenase yes no 2 5.318E-05 106.49 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9224300 9224300 0 9224300 9224300 0 0 0 0 10290 1338 10575 27298 42752;42753 42752 2 NVDELSSLQSSADTSSSRPGSR PELMQHVKSTHGVPRNVDELSSLQSSADTS LQSSADTSSSRPGSRVPTEPPATSVAARSS R N V S R V 1 2 1 2 0 1 1 1 0 0 2 0 0 0 1 8 1 0 0 1 0 0 22 1 2279.0626 Q92610 Q92610 920 941 ZNF592 Zinc finger protein 592 yes yes 3 0.0016001 44.729 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4999600 4999600 0 4999600 4999600 0 0 0 0 10291 1948 10576 27299;27300 42754;42755;42756 42754 3 NVDLLSDMVQEHDEPILK EDPKGIPEFWLTVFKNVDLLSDMVQEHDEP LLSDMVQEHDEPILKHLKDIKVKFSDAGQP K N V L K H 0 0 1 3 0 1 2 0 1 1 3 1 1 0 1 1 0 0 0 2 0 0 18 0 2094.0303 F8VY35;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8W020;F8W118;F8VXI6;F8VUX1;F8VV59;A0A024RBE6;F8W0J6;B7Z2V4;H0YH88;H0YHC3;F8W543;B7Z9C2 F8VY35 177 194 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2;3 8.0214E-17 104.61 6 6 1.2891 1.205 33.09 11 Median 1.3119 1.4044 35.866 6 0 Median 1.2803 1.0507 31.792 5 0 Median 655200000 271040000 384160000 536060000 218380000 317680000 119140000 52666000 66474000 10292 332 10577;10578 27301;27302;27303;27304;27305;27306;27307;27308;27309;27310;27311;27312 42757;42758;42759;42760;42761;42762;42763;42764;42765;42766;42767;42768;42769;42770;42771;42772;42773 42769 251 12 NVDMLSELVQEYDEPILK PDPKGIPEFWFTIFRNVDMLSELVQEYDEP MLSELVQEYDEPILKH______________ R N V L K H 0 0 1 2 0 1 3 0 0 1 3 1 1 0 1 1 0 0 1 2 0 0 18 0 2134.0504 A8MXH2;C9JZI7;A0A024RCC9;B7ZAK9;B7ZB83;B7ZAC7;B4DS05;Q99733;H0YCI4 A8MXH2 138 155 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2 0.0015077 46.481 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3025200 0 3025200 3025200 0 3025200 0 0 0 10293 359 10579 27313 42774 42774 268 1 NVEDFLALTGIESADK KFGKFSVKENKQLEKNVEDFLALTGIESAD VEDFLALTGIESADKLLYTDRYPEEKSVIT K N V D K L 2 0 1 2 0 0 2 1 0 1 2 1 0 1 0 1 1 0 0 1 0 0 16 0 1720.8519 B4DZG2;A0A024R8C1;Q15361;A0A087WY09 B4DZG2 550 565 TTF1 Transcription termination factor 1 yes no 2 1.152E-06 96.464 2 1 1.0327 1.0542 28.45 3 Median 1.0319 1.0478 0.85908 2 0 Median 2.0972 1.715 NaN 1 0 Median 41995000 19375000 22620000 29367000 14933000 14434000 12628000 4442100 8186100 10294 247 10580 27314;27315;27316 42775;42776;42777;42778 42776 4 NVEEIVVK ALIQSDSGDSIEVSRNVEEIVVKIISVFVD DSIEVSRNVEEIVVKIISVFVDALPHVPEH R N V V K I 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 8 0 928.52295 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1371 1378 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.033237 57.281 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46321000 46321000 0 46321000 46321000 0 0 0 0 10295 897 10581 27317 42779 42779 1 NVELFIATSQK DAVPMSLSYEELVRRNVELFIATSQKFVQE LVRRNVELFIATSQKFVQETELSQRIRDWE R N V Q K F 1 0 1 0 0 1 1 0 0 1 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1248.6714 A0A0A6YYG7;Q6IBW4;H0YC55 A0A0A6YYG7 474 484 NCAPH2 Condensin-2 complex subunit H2 yes no 2 0.0021492 77.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1697400 1697400 0 0 0 0 1697400 1697400 0 10296 491 10582 27318 42780 42780 1 NVELTEVGPR YISFRHHVYKKTDHRNVELTEVGPRFELKL KTDHRNVELTEVGPRFELKLYMIRLGTLEQ R N V P R F 0 1 1 0 0 0 2 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 10 0 1112.5826 H0Y714;Q96G21;E7ENR5;B9A008 H0Y714 230 239 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.045382 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10297 1286 10583 27319 42781 42781 1 NVEMFMNIEK GWRRFDLQNPSRMDRNVEMFMNIEKTLVQN SRMDRNVEMFMNIEKTLVQNNCLTRPNIYL R N V E K T 0 0 2 0 0 0 2 0 0 1 0 1 2 1 0 0 0 0 0 1 0 0 10 0 1253.5784 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 148 157 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 0.0065683 59.908 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10298 1798 10584 27320 42782 42782 1662;1663 1 NVESGEEELASK WDRREPLSLINVRKRNVESGEEELASKLDH RKRNVESGEEELASKLDHYKAKATRHIFLI R N V S K L 1 0 1 0 0 0 4 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1290.5939 Q96HS1 Q96HS1 77 88 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 4.5357E-08 115.18 2 1.9459 2.1243 5.5367 2 Median 1.9459 2.1243 5.5367 2 0 Median NaN NaN NaN 0 0 Median 97051000 31956000 65094000 97051000 31956000 65094000 0 0 0 10299 1972 10585 27321;27322 42783;42784;42785 42783 3 NVESTNSNAYTQR RDLKSLEDPPTRIGKNVESTNSNAYTQRSS GKNVESTNSNAYTQRSSTDFSELEQPRSCL K N V Q R S 1 1 3 0 0 1 1 0 0 0 0 0 0 0 0 2 2 0 1 1 0 0 13 0 1482.6699 A0A024RAC0;Q86V48 A0A024RAC0 943 955 LUZP1 Leucine zipper protein 1 yes no 2 1.4924E-05 94.767 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3492400 0 3492400 3492400 0 3492400 0 0 0 10300 300 10586 27323 42786 42786 1 NVFIIGATNRPDIIDPAILRPGR INQILTEMDGMSTKKNVFIIGATNRPDIID NRPDIIDPAILRPGRLDQLIYIPLPDEKSR K N V G R L 2 3 2 2 0 0 0 2 0 5 1 0 0 1 3 0 1 0 0 1 0 0 23 2 2517.418 V9HW80;P55072;Q96IF9;Q0IIN5;Q9NTC4;Q9HAP0 V9HW80 616 638 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 3 1.6269E-05 45.047 1 2 0.80637 0.94757 7.2785 2 Median NaN NaN NaN 0 0 Median 0.80637 0.94757 7.2785 2 0 Median 19803000 7547700 12255000 5671900 0 5671900 14131000 7547700 6583000 10301 1613 10587 27324;27325;27326 42787;42788;42789 42789 3 NVFLLGFIPAK PLGETVLECYNCGCRNVFLLGFIPAKADSV CGCRNVFLLGFIPAKADSVVVLLCRQPCAS R N V A K A 1 0 1 0 0 0 0 1 0 1 2 1 0 2 1 0 0 0 0 1 0 0 11 0 1217.7172 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 190 200 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.00018274 93.551 2 2.2318 2.2704 3.519 2 Median 2.2318 2.2704 3.519 2 0 Median NaN NaN NaN 0 0 Median 27584000 9517000 18067000 27584000 9517000 18067000 0 0 0 10302 231 10588 27327;27328 42790;42791;42792;42793;42794 42793 5 NVFNPEAFK GVLAYARLSHLSDSKNVFNPEAFKPGNTHK HLSDSKNVFNPEAFKPGNTHKCRIIDYSQM K N V F K P 1 0 2 0 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 1 0 0 9 0 1064.5291 Q14690;B4DH82;B4DES7 Q14690 404 412 PDCD11 Protein RRP5 homolog yes no 2 0.011085 66.692 2 1.1362 1.1529 10.95 2 Median 1.1362 1.1529 10.95 2 0 Median NaN NaN NaN 0 0 Median 43892000 19810000 24082000 43892000 19810000 24082000 0 0 0 10303 1741 10589 27329;27330 42795;42796;42797 42795 3 NVFNPEAFKPGNTHK GVLAYARLSHLSDSKNVFNPEAFKPGNTHK NVFNPEAFKPGNTHKCRIIDYSQMDELALL K N V H K C 1 0 3 0 0 0 1 1 1 0 0 2 0 2 2 0 1 0 0 1 0 0 15 1 1698.8478 Q14690;B4DH82;B4DES7 Q14690 404 418 PDCD11 Protein RRP5 homolog yes no 3 0.0040103 29.491 1 0.89778 1.0632 NaN 1 Median 0.89778 1.0632 NaN 1 0 Median NaN NaN NaN 0 0 Median 29214000 14410000 14803000 29214000 14410000 14803000 0 0 0 10304 1741 10590 27331 42798;42799 42798 2 NVGQFSGFPFEK KLLYNRPGTVSSLKKNVGQFSGFPFEKGSV LKKNVGQFSGFPFEKGSVQYKKKEEMLKKF K N V E K G 0 0 1 0 0 1 1 2 0 0 0 1 0 3 1 1 0 0 0 1 0 0 12 0 1355.651 P35659;B4DFG0;D6RDA2;D6R9L5 P35659 126 137 DEK Protein DEK yes no 2 3.9237E-23 160.53 6 2 0.84807 0.75561 27.542 6 Median 0.78808 0.89882 30.867 4 0 Median 0.84807 0.73827 1.6641 2 0 Median 2053200000 1204200000 848980000 1625200000 974920000 650310000 427940000 229270000 198670000 10305 1546 10591 27332;27333;27334;27335;27336;27337;27338;27339 42800;42801;42802;42803;42804;42805;42806;42807;42808;42809;42810;42811;42812;42813;42814;42815;42816;42817;42818;42819;42820;42821;42822;42823;42824;42825;42826;42827 42812 28 NVHSEDFENR PCSSKFFSAYKSHFRNVHSEDFENRILLNC KSHFRNVHSEDFENRILLNCPYCTFNADKK R N V N R I 0 1 2 1 0 0 2 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 10 0 1245.5374 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 95 104 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.024915 53.751 1 1 1.4905 1.2939 NaN 1 Median NaN NaN NaN 0 0 Median 1.4905 1.2939 NaN 1 0 Median 4929100 960670 3968500 2550600 0 2550600 2378500 960670 1417800 10306 878 10592 27340;27341 42828;42829;42830 42829 3 NVIFEISPTEEVGDFEVK GVLLEIEDLQVNQFKNVIFEISPTEEVGDF FEISPTEEVGDFEVKAKFMGVQMETFMLHY K N V V K A 0 0 1 1 0 0 4 1 0 2 0 1 0 2 1 1 1 0 0 3 0 0 18 0 2051.0099 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 A4QPB0 1587 1604 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 5.9329E-12 108.17 2 2 1.6715 1.6854 54.485 4 Linear 1.6225 1.6725 1.7247 2 0 Median 0.85621 0.6908 32.936 2 0 Median 29697000 11663000 18034000 23687000 9119200 14568000 6009900 2543800 3466100 10307 352 10593 27342;27343;27344;27345 42831;42832;42833;42834 42832 4 NVIFQPVAELK FTTDDSICVLGISKRNVIFQPVAELKKQTD ISKRNVIFQPVAELKKQTDFEHRIPKEQWW R N V L K K 1 0 1 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1256.7129 Q01813;Q8WTZ9;O14943;B1APP8;H0Y757;Q49A78 Q01813 726 736 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0064337 54.416 1 1.3861 1.1001 NaN 1 Median NaN NaN NaN 0 0 Median 1.3861 1.1001 NaN 1 0 Median 2997000 1561000 1436000 0 0 0 2997000 1561000 1436000 10308 1677 10594 27346 42835 42835 1 NVIHASDSVEGAQR APGTIRGDFSVHISRNVIHASDSVEGAQRE RNVIHASDSVEGAQREIQLWFQSSELVSWA R N V Q R E 2 1 1 1 0 1 1 1 1 1 0 0 0 0 0 2 0 0 0 2 0 0 14 0 1481.7223 A0A087WVT9;Q4TT34;F2Z2X0;O00746 A0A087WVT9 114 127 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2;3 3.3606E-06 98.353 2 3 0.62667 0.54233 10.133 3 Plateau NaN NaN NaN 0 0 Median 0.62667 0.54233 10.133 3 0 Plateau 10036000 7555100 2480800 3612800 3612800 0 6423100 3942300 2480800 10309 420 10595 27347;27348;27349;27350;27351 42836;42837;42838;42839;42840 42836 5 NVIHPFLSR AVHPKDTRYQHLKGKNVIHPFLSRSLPIVF QHLKGKNVIHPFLSRSLPIVFDEFVDMDFG K N V S R S 0 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 1 0 0 9 0 1081.6033 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 563 571 VARS Valine--tRNA ligase yes no 3 0.035205 35.826 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3841500 3841500 0 3841500 3841500 0 0 0 0 10310 363 10596 27352 42841 42841 1 NVIVNGLVLASDGQK LLVLATALFGQPPFKNVIVNGLVLASDGQK NVIVNGLVLASDGQKMSKRKKNYPDPVSII K N V Q K M 1 0 2 1 0 1 0 2 0 1 2 1 0 0 0 1 0 0 0 3 0 0 15 0 1525.8464 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4 Q59G75 603 617 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0006361 53.252 2 1.4654 1.4913 NaN 1 Median 1.4654 1.4913 NaN 1 0 Median NaN NaN NaN 0 0 Median 18766000 8883100 9882700 18766000 8883100 9882700 0 0 0 10311 1561 10597 27353;27354 42842;42843;42844 42843 3 NVLAASSEYFQSLFTNK DVLLIVGDQKFRAHKNVLAASSEYFQSLFT LAASSEYFQSLFTNKENESQTVFQLDFCEP K N V N K E 2 0 2 0 0 1 1 0 0 0 2 1 0 2 0 3 1 0 1 1 0 0 17 0 1917.9472 Q9ULJ3;Q5H9S0;B4DTN6;E7EVF9 Q9ULJ3 46 62 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 7.7481E-05 63.76 1 0.60911 0.61591 NaN 1 Median 0.60911 0.61591 NaN 1 0 Median NaN NaN NaN 0 0 Median 5646600 3258200 2388400 5646600 3258200 2388400 0 0 0 10312 2109 10598 27355 42845 42845 1 NVLASASADNTVILWDMSLGK HTDAVLDLSWNKLIRNVLASASADNTVILW SADNTVILWDMSLGKPAASLAVHTDKVQTL R N V G K P 3 0 2 2 0 0 0 1 0 1 3 1 1 0 0 3 1 1 0 2 0 0 21 0 2204.1147 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 270 290 PWP1 Periodic tryptophan protein 1 homolog yes no 2 2.9589E-05 42.568 1 1.2838 1.2897 NaN 1 Median 1.2838 1.2897 NaN 1 0 Median NaN NaN NaN 0 0 Median 7424200 2912500 4511700 7424200 2912500 4511700 0 0 0 10313 339 10599 27356 42846 42846 255 1 NVLCSACSGQGGK EDLYNGKTTKLQLSKNVLCSACSGQGGKSG SKNVLCSACSGQGGKSGAVQKCSACRGRGV K N V G K S 1 0 1 0 2 1 0 3 0 0 1 1 0 0 0 2 0 0 0 1 0 0 13 0 1336.5864 A0A024R6S1;O60884;A0A087WT48 A0A024R6S1 140 152 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 1.435E-18 138.22 2 2 1.0327 0.94902 36.876 4 Median 1.2425 1.301 0.98024 2 0 Median 0.87876 0.68718 2.0204 2 0 Median 42424000 20123000 22302000 35748000 16477000 19271000 6676900 3645700 3031200 10314 208 10600 27357;27358;27359;27360 42847;42848;42849;42850;42851;42852;42853;42854 42850 8 NVLDTSWPTPPPALR VRTSFLLNLRRQLPRNVLDTSWPTPPPALR NVLDTSWPTPPPALREASELLRELCIKNMV R N V L R E 1 1 1 1 0 0 0 0 0 0 2 0 0 0 4 1 2 1 0 1 0 0 15 0 1662.873 D3DTH7 D3DTH7 626 640 MYO1C yes yes 2 2.8101E-06 98.407 3 2 1.0851 0.99796 23.861 4 Median 0.83341 0.84021 3.282 2 0 Median 1.477 1.2503 10.83 2 0 Median 64539000 30768000 33771000 51553000 26020000 25533000 12986000 4747200 8238300 10315 1189 10601 27361;27362;27363;27364;27365 42855;42856;42857;42858;42859;42860;42861;42862 42857 8 NVLGHMQQGGAPSPFDR QLYSEEGKGVFDCRKNVLGHMQQGGAPSPF LGHMQQGGAPSPFDRNFGTKISARAMEWIT K N V D R N 1 1 1 1 0 2 0 3 1 0 1 0 1 1 2 1 0 0 0 1 0 0 17 0 1809.8581 Q01813;Q8WTZ9;O14943;B1APP8;H0Y757;Q49A78 Q01813 667 683 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 3 1.5804E-05 75.239 1 2.4968 2.6283 NaN 1 Median 2.4968 2.6283 NaN 1 0 Median NaN NaN NaN 0 0 Median 39914000 12658000 27256000 39914000 12658000 27256000 0 0 0 10316 1677 10602 27366 42863;42864 42864 1477 2 NVLGLVPQALPK VLPGGTATSPKMIAKNVLGLVPQALPKADG IAKNVLGLVPQALPKADGRAGLGTGGQKVN K N V P K A 1 0 1 0 0 1 0 1 0 0 3 1 0 0 2 0 0 0 0 2 0 0 12 0 1247.7602 Q8N1G0;H0Y5I5;F8WCX2 Q8N1G0 440 451 ZNF687 Zinc finger protein 687 yes no 2 0.00013824 93.551 2 2 0.76938 0.80635 32.967 3 Median 0.74033 0.7718 6.1946 2 0 Median 1.6575 1.3592 NaN 1 0 Median 44824000 23037000 21787000 35390000 21059000 14331000 9434000 1978300 7455700 10317 1905 10603 27367;27368;27369;27370 42865;42866;42867;42868;42869;42870;42871 42868 7 NVLIEVNPQTR LNRAGLLQVYIHTQKNVLIEVNPQTRIPRT HTQKNVLIEVNPQTRIPRTFDRFCGLMVQL K N V T R I 0 1 2 0 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1281.7041 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65;A0A087WVM7;A0A0U3B3H7 A8K6D2 115 125 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 0.00019413 93.058 2 1 1.1136 1.2692 4.9609 3 Median 1.1084 1.2831 1.5335 2 0 Median 1.3716 1.1799 NaN 1 0 Median 446420000 203650000 242770000 397080000 182400000 214680000 49346000 21254000 28092000 10318 759 10604 27371;27372;27373 42872;42873;42874;42875;42876 42874 5 NVLLNNSEK EGKKRQLYMVSKELRNVLLNNSEKMKVINT VSKELRNVLLNNSEKMKVINTGIKVWCRNN R N V E K M 0 0 3 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1029.5455 Q08J23 Q08J23 569 577 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.0014274 86.205 2 1.6685 1.865 NaN 1 Median 1.6685 1.865 NaN 1 0 Median NaN NaN NaN 0 0 Median 127270000 41602000 85669000 127270000 41602000 85669000 0 0 0 10319 1694 10605 27374;27375 42877;42878 42877 2 NVLTNTQSENER VRKVLELQTELKQLRNVLTNTQSENERLAS QLRNVLTNTQSENERLASVAQELKEINQNV R N V E R L 0 1 3 0 0 1 2 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 12 0 1403.6641 Q8TD16 Q8TD16 130 141 BICD2 Protein bicaudal D homolog 2 yes yes 2 0.0010671 72.434 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10320 1932 10606 27376 42879 42879 1 NVLVPLSR ETRKNPNQSSKGRSKNVLVPLSRSCPVCCK SSKGRSKNVLVPLSRSCPVCCKSFATKANV K N V S R S 0 1 1 0 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 8 0 896.54435 Q2TB10;B7Z4V7;A0A087WXB4 Q2TB10 280 287 ZNF800 Zinc finger protein 800 yes no 2 0.039261 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6524800 0 6524800 6524800 0 6524800 0 0 0 10321 1777 10607 27377 42880 42880 1 NVLVSEDNVAK YLEGNNFVHRDLAARNVLVSEDNVAKVSDF LAARNVLVSEDNVAKVSDFGLTKEASSTQD R N V A K V 1 0 2 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 3 0 0 11 0 1186.6194 B4DMZ0;Q53EL3;B5BU52;B2R6Q4;A8K3B6;P41240;B4DP99 B4DMZ0 240 250 CSK Non-specific protein-tyrosine kinase;Tyrosine-protein kinase CSK yes no 2 0.0076189 52.278 1 0.62111 0.63739 NaN 1 Median 0.62111 0.63739 NaN 1 0 Median NaN NaN NaN 0 0 Median 25413000 12209000 13204000 25413000 12209000 13204000 0 0 0 10322 720 10608 27378 42881 42881 1 NVMVEPHR RGRGRGGKRGNQSGKNVMVEPHRHEGVFIC RGNQSGKNVMVEPHRHEGVFICRGKEDALV K N V H R H 0 1 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 2 0 0 8 0 980.48618 Q96BS4;P22087;M0QXL5;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0;A0A0D9SFM2;M0QXC9 Q96BS4 24 31 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 0.00046967 122.18 2 2 0.92384 0.83892 11.831 4 Median 0.83138 0.88549 18.199 2 0 Median 0.98991 0.83892 7.7165 2 0 Median 115390000 62822000 52570000 109050000 59659000 49387000 6346400 3163200 3183100 10323 1506 10609;10610 27379;27380;27381;27382 42882;42883;42884;42885;42886;42887 42882 1275 6 NVNSNLITWNR HLLDYVMTTLLFSDKNVNSNLITWNRVVLL FSDKNVNSNLITWNRVVLLHGPPGTGKTSL K N V N R V 0 1 4 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 1 0 0 11 0 1329.6789 Q15645;H0YAL2 Q15645 163 173 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 3.1676E-06 98.249 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10324 1763 10611 27383;27384 42888;42889 42888 2 NVPNLHVMK KKDVHMPKHPELADKNVPNLHVMKAMQSLK PELADKNVPNLHVMKAMQSLKSRGYVKEQF K N V M K A 0 0 2 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 2 0 0 9 0 1050.5644 P46783;Q59GE4;F6U211;S4R435;Q9NQ39 P46783 39 47 RPS10;RPS10-NUDT3;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2;3 0.00098452 77.674 3 1.5815 1.8627 8.887 3 Median 1.5815 1.8627 8.887 3 0 Median NaN NaN NaN 0 0 Median 1007500000 377910000 629600000 1007500000 377910000 629600000 0 0 0 10325 1573 10612 27385;27386;27387 42890;42891;42892;42893;42894 42894 1354 5 NVPVITGSK WVQKLIIFDCRSRPRNVPVITGSKDLQNVN CRSRPRNVPVITGSKDLQNVNITLRILFRP R N V S K D 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1 1 1 0 0 2 0 0 9 0 913.52328 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 75 83 HEL-S-54e;PHB Prohibitin yes no 2 0.014627 55.503 2 1 1.6398 1.8806 15.22 3 Median 1.5495 1.797 6.4322 2 0 Median 2.8279 2.311 NaN 1 0 Median 532140000 215460000 316680000 523940000 213270000 310670000 8192900 2184800 6008100 10326 730 10613 27388;27389;27390 42895;42896;42897;42898;42899 42898 5 NVPYVFVR PLEIILHLPLLCEDKNVPYVFVRSKQALGR PLLCEDKNVPYVFVRSKQALGRACGVSRPV K N V V R S 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 3 0 0 8 0 992.54435 Q6FHM6;B1AHD1;P55769 Q6FHM6 77 84 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2 0.0077998 81.381 2 2 0.77211 0.78246 5.9264 4 Median 0.69937 0.81801 1.145 2 0 Median 0.85563 0.74107 2.5471 2 0 Median 840420000 486240000 354180000 753120000 439130000 314000000 87296000 47109000 40187000 10327 812 10614 27391;27392;27393;27394 42900;42901;42902;42903;42904;42905;42906;42907;42908;42909;42910 42903 11 NVQAEEMVEFSSGLK VLSIGDGIARVHGLRNVQAEEMVEFSSGLK NVQAEEMVEFSSGLKGMSLNLEPDNVGVVV R N V L K G 1 0 1 0 0 1 3 1 0 0 1 1 1 1 0 2 0 0 0 2 0 0 15 0 1666.7872 V9HW26;P25705;K7ERX7;B4DGW3;K7EK77;K7EQH4;K7EJP1 V9HW26 89 103 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.0051132 46.706 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10328 1518 10615 27395 42911 42911 1284 1 NVQALEIELQSQLALK EQISSYKSEITELRRNVQALEIELQSQLAL VQALEIELQSQLALKQSLEASLAETEGRYC R N V L K Q 2 0 1 0 0 3 2 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 16 0 1796.0044 CON__P13645;P13645 CON__P13645 371 386 KRT10 Keratin, type I cytoskeletal 10 yes no 2 6.9297E-106 259.23 6 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 567640000 567640000 0 345760000 345760000 0 221880000 221880000 0 + 10329 1161 10616 27396;27397;27398;27399;27400;27401;27402;27403;27404;27405 42912;42913;42914;42915;42916;42917;42918;42919;42920;42921;42922;42923;42924;42925 42917 14 NVQDAIADAEQRGEHALK QRLQGEIAHVKKQCKNVQDAIADAEQRGEH DAIADAEQRGEHALKDARNKLNDLEEALQQ K N V L K D 4 1 1 2 0 2 2 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 18 1 1963.9712 CON__P35908;P35908 CON__P35908 425 442 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 3 4.6733E-06 74.12 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31039000 31039000 0 5656700 5656700 0 25383000 25383000 0 + 10330 1166 10617 27406;27407;27408 42926;42927;42928 42928 3 NVQGIIEILK PHYFWPLLVGRRKEKNVQGIIEILKGMQEL RRKEKNVQGIIEILKGMQELGVHPDQETYT K N V L K G 0 0 1 0 0 1 1 1 0 3 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1125.6758 E5KNY5;P42704;B4DSR0;A0A0C4DG06;B8ZZ38 E5KNY5 454 463 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00041053 87.308 1 1.5405 1.5157 NaN 1 Median 1.5405 1.5157 NaN 1 0 Median NaN NaN NaN 0 0 Median 23856000 10041000 13815000 23856000 10041000 13815000 0 0 0 10331 1207 10618 27409 42929;42930 42930 2 NVQLPEVTINEETALAEVNLK NILDACTFALLAALKNVQLPEVTINEETAL VTINEETALAEVNLKKKSYLNIRTHPVATS K N V L K K 2 0 3 0 0 1 4 0 0 1 3 1 0 0 1 0 2 0 0 3 0 0 21 0 2323.2271 Q96B26;Q5JXM0 Q96B26 162 182 EXOSC8;DKFZp564C0482 Exosome complex component RRP43 yes no 2 1.0132E-05 48.527 2 0.81952 0.83837 1.8687 2 Median 0.81952 0.83837 1.8687 2 0 Median NaN NaN NaN 0 0 Median 22074000 10696000 11378000 22074000 10696000 11378000 0 0 0 10332 1959 10619 27410;27411 42931;42932 42932 2 NVQLQENEIR IIQRLLEVRGSKPGKNVQLQENEIRGLCLK SKPGKNVQLQENEIRGLCLKSREIFLSQPI K N V I R G 0 1 2 0 0 2 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1241.6364 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5 A0A024RBP2 27 36 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 2 1.8297E-16 158.87 2 1 1.8621 2.1386 12.093 3 Median 1.8501 2.1315 0.47129 2 0 Median 3.0128 2.628 NaN 1 0 Median 434660000 145360000 289300000 397980000 136460000 261520000 36674000 8892800 27781000 10333 343 10620 27412;27413;27414 42933;42934;42935;42936;42937;42938;42939;42940 42936 8 NVQLTENEIR IIGRLLEVQGSRPGKNVQLTENEIRGLCLK SRPGKNVQLTENEIRGLCLKSREIFLSQPI K N V I R G 0 1 2 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1214.6255 P62136;A0A140VJS9;B3KXM2;E9PMD7;F5H1L6;F5H037 P62136 27 36 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2 1.819E-15 132.9 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72567000 0 72567000 68539000 0 68539000 4028800 0 4028800 10334 1632 10621 27415;27416;27417 42941;42942;42943 42941 3 NVQLVCSEHGLDNK VLEERPLTLYRGNSRNVQLVCSEHGLDNKI RNVQLVCSEHGLDNKIYPKNTKKKRVDLPK R N V N K I 0 0 2 1 1 1 1 1 1 0 2 1 0 0 0 1 0 0 0 2 0 0 14 0 1611.7675 Q96QE3 Q96QE3 1425 1438 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 2 0.0017426 68.536 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5176200 0 5176200 5176200 0 5176200 0 0 0 10335 1984 10622 27418;27419 42944;42945 42945 2 NVQSVSIIDTELK GDYTWTEFDEPFLTRNVQSVSIIDTELKVK TRNVQSVSIIDTELKVKDSQPIDLSACTVA R N V L K V 0 0 1 1 0 1 1 0 0 2 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1444.7773 Q15645;H0YAL2 Q15645 69 81 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 3.4365E-14 136.48 2 2 1.3189 1.2721 42.681 4 Median 1.5578 1.7657 5.9481 2 0 Median 1.0793 0.85856 15.193 2 0 Median 248940000 97930000 151010000 227050000 87618000 139430000 21892000 10312000 11580000 10336 1763 10623 27420;27421;27422;27423 42946;42947;42948;42949;42950 42946 5 NVSGFPQYPTGQEK LRYSYKDSFGSAVPRNVSGFPQYPTGQEKG RNVSGFPQYPTGQEKGDFTGHGERKGRNEK R N V E K G 0 0 1 0 0 2 1 2 0 0 0 1 0 1 2 1 1 0 1 1 0 0 14 0 1550.7365 W5ZR30;Q9UGU0 W5ZR30 720 733 TCF20 Transcription factor 20 yes no 2 0.0010233 77.124 1 2 2.7579 2.2404 12.616 2 Median NaN NaN NaN 0 0 Median 2.7579 2.2404 12.616 2 0 Median 5619200 1941300 3677900 0 0 0 5619200 1941300 3677900 10337 2100 10624 27424;27425;27426 42951;42952;42953;42954;42955;42956 42951 6 NVSIVAFYIYEQTK PLYFMDEIDAALDFKNVSIVAFYIYEQTKN KNVSIVAFYIYEQTKNAQFIIISLRNNMFE K N V T K N 1 0 1 0 0 1 1 0 0 2 0 1 0 1 0 1 1 0 2 2 0 0 14 0 1673.8665 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1229 1242 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.3537E-05 97.121 1 1.8936 1.5457 NaN 1 Median NaN NaN NaN 0 0 Median 1.8936 1.5457 NaN 1 0 Median 7977900 2683600 5294300 0 0 0 7977900 2683600 5294300 10338 2070 10625 27427 42957;42958 42957 2 NVSSFPDDATSPLQENR ELRKAKKDDQMLKRRNVSSFPDDATSPLQE SSFPDDATSPLQENRNNQGTVNWSVDDIVK R N V N R N 1 1 2 2 0 1 1 0 0 0 1 0 0 1 2 3 1 0 0 1 0 0 17 0 1875.8599 Q7Z726;A8K7D9;P52292;J3QLL0;J3KS65 Q7Z726 52 68 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 1.1785E-07 125.53 2 1 1.2429 1.3954 57.021 3 Plateau 1.2733 1.3802 1.55 2 0 Median 0.63625 0.51417 NaN 1 0 Median 96227000 43915000 52312000 84729000 37579000 47149000 11498000 6335600 5162900 10339 769 10626 27428;27429;27430 42959;42960;42961;42962;42963;42964 42962 6 NVSVQYR LVALFYHFVQIVHKKNVSVQYREYGLHAAG FVQIVHKKNVSVQYREYGLHAAGLYFLLLE K N V Y R E 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 2 0 0 7 0 864.44537 P42695;G3V1A9;E9PKK4 P42695 104 110 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.013268 103.29 1 1.2107 1.2385 NaN 1 Median 1.2107 1.2385 NaN 1 0 Median NaN NaN NaN 0 0 Median 33194000 17108000 16086000 33194000 17108000 16086000 0 0 0 10340 1565 10627 27431 42965 42965 1 NVTAIQGPGGK TRGFTGGAPIQWEERNVTAIQGPGGKWMIP WEERNVTAIQGPGGKWMIPSEAKESMDKNK R N V G K W 1 0 1 0 0 1 0 3 0 1 0 1 0 0 1 0 1 0 0 1 0 0 11 0 1040.5615 H0YMU3;B4DJB4;H0YL72;B4DSY4;Q53GF8;P50213;H0YLI6;H0YKD0;H0YM64 H0YMU3 39 49 IDH3A Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2 0.0011047 78.06 2 1.881 1.9407 NaN 1 Median 1.881 1.9407 NaN 1 0 Median NaN NaN NaN 0 0 Median 45966000 27394000 18572000 45966000 27394000 18572000 0 0 0 10341 987 10628 27432;27433 42966;42967;42968;42969 42968 4 NVTDEQEGFAEGFVR HITTTPTPTQFLCPKNVTDEQEGFAEGFVR NVTDEQEGFAEGFVRALAELHSQNTLPSVT K N V V R A 1 1 1 1 0 1 3 2 0 0 0 0 0 2 0 0 1 0 0 2 0 0 15 0 1696.7693 P05412;Q6FHK0 P05412 102 116 JUN Transcription factor AP-1 yes no 2 8.0527E-06 115.14 1 2 1.042 0.94866 6.0379 3 Median 0.94905 0.96657 NaN 1 0 Median 1.0718 0.90512 6.6446 2 0 Median 45080000 25425000 19655000 30118000 17945000 12174000 14962000 7480500 7481400 10342 1447 10629 27434;27435;27436 42970;42971;42972;42973;42974;42975;42976 42970 7 NVTDVVNTCHDAGISK ASPKLVMEEAPESYKNVTDVVNTCHDAGIS VTDVVNTCHDAGISKKAIKLRPIAVIKG__ K N V S K K 1 0 2 2 1 0 0 1 1 1 0 1 0 0 0 1 2 0 0 3 0 0 16 0 1728.8101 Q9Y3I0 Q9Y3I0 477 492 RTCB tRNA-splicing ligase RtcB homolog yes yes 2;3 1.5513E-24 139.86 5 1 1.1428 1.2008 8.6001 5 Median 1.1287 1.2171 3.9116 4 0 Median 1.2478 1.0113 NaN 1 0 Median 140700000 68388000 72310000 138020000 67215000 70804000 2678300 1172800 1505500 10343 2137 10630 27437;27438;27439;27440;27441;27442 42977;42978;42979;42980;42981;42982;42983;42984;42985;42986 42983 10 NVTELNEPLSNEER AEQAERYDDMAAAMKNVTELNEPLSNEERN KNVTELNEPLSNEERNLLSVAYKNVVGARR K N V E R N 0 1 3 0 0 0 4 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 14 0 1642.7798 B4DE78;B3KNB4;P61981;B4DHC4 B4DE78 29 42 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 2 1.2304E-06 101.53 2 2 1.3969 1.2339 1.4545 2 Median NaN NaN NaN 0 0 Median 1.3969 1.2339 1.4545 2 0 Median 7370300 5114400 2255900 2999600 2999600 0 4370700 2114800 2255900 10344 912 10631 27443;27444;27445;27446 42987;42988;42989;42990;42991 42987 5 NVTICPNPEDTCDFAR GIEPLSEDAIITGFRNVTICPNPEDTCDFA VTICPNPEDTCDFARAARFVSTPFHEIMSL R N V A R A 1 1 2 2 2 0 1 0 0 1 0 0 0 1 2 0 2 0 0 1 0 0 16 0 1907.8142 O60566 O60566 598 613 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.0064285 50.207 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10345 1396 10632 27447 42992 42992 1 NVTLPAVFK PLISVYSEKGESSGKNVTLPAVFKAPIRPD GESSGKNVTLPAVFKAPIRPDIVNFVHTNL K N V F K A 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 9 0 987.57532 P36578;Q59GY2;B4DMJ6;B4DFI6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 21 29 RPL4 60S ribosomal protein L4 yes no 2 0.002124 76.478 1 2 0.75323 0.88972 NaN 1 Median 0.75323 0.88972 NaN 1 0 Median NaN NaN NaN 0 0 Median 1315700000 640620000 675070000 1198900000 640620000 558280000 116790000 0 116790000 10346 1548 10633 27448;27449;27450 42993;42994;42995;42996;42997 42993 5 NVTQIEPFCLETDR LPHFDTINLPEKKVKNVTQIEPFCLETDRR KNVTQIEPFCLETDRRGALKAQTWKHQLEE K N V D R R 0 1 1 1 1 1 2 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 14 0 1720.809 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 586 599 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.028181 31.639 1 1.8943 1.6353 NaN 1 Median NaN NaN NaN 0 0 Median 1.8943 1.6353 NaN 1 0 Median 3410300 998410 2411900 0 0 0 3410300 998410 2411900 10347 1837 10634 27451 42998 42998 1 NVTQIEPFCLETDRR LPHFDTINLPEKKVKNVTQIEPFCLETDRR NVTQIEPFCLETDRRGALKAQTWKHQLEEE K N V R R G 0 2 1 1 1 1 2 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 15 1 1876.9101 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 586 600 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 5.5838E-05 54.598 1 2 1.2575 1.0618 33.578 3 Median 0.57455 0.62022 NaN 1 0 Median 1.2607 1.105 5.6365 2 0 Median 40114000 19453000 20661000 18352000 10067000 8285900 21761000 9386100 12375000 10348 1837 10635 27452;27453;27454 42999;43000;43001;43002 42999 4 NVVDSSQKPTPSAR KTSEKKDSKESSVVKNVVDSSQKPTPSARE KNVVDSSQKPTPSAREDPAPKKSSSEPPPR K N V A R E 1 1 1 1 0 1 0 0 0 0 0 1 0 0 2 3 1 0 0 2 0 0 14 1 1484.7583 Q03164;E9PR05;B3W6H7;Q8N6B4;Q1HA41 Q03164 1236 1249 KMT2A;TET1-MLL;MLL/CALM fusion;MLL-MAML2 Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.0038843 81.239 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25307000 18418000 6889600 18418000 18418000 0 6889600 0 6889600 10349 1680 10636 27455;27456;27457 43003;43004;43005 43003 3 NVVHQLSVTLEDLYNGATR FFGGGGRMQRERRGKNVVHQLSVTLEDLYN QLSVTLEDLYNGATRKLALQKNVICDKCEG K N V T R K 1 1 2 1 0 1 1 1 1 0 3 0 0 0 0 1 2 0 1 3 0 0 19 0 2128.0913 P31689 P31689 106 124 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 5.7858E-11 100.02 6 2 0.92624 0.93515 26.748 5 Median 1.0884 1.1233 10.638 3 0 Median 0.79682 0.66335 5.1927 2 0 Median 74511000 31131000 43381000 40180000 11978000 28203000 34331000 19153000 15178000 10350 1535 10637 27458;27459;27460;27461;27462;27463;27464;27465 43006;43007;43008;43009;43010;43011;43012;43013;43014;43015;43016;43017;43018;43019 43006 14 NVVMFVAQVLVGK KDAIYSHKNCPYDAKNVVMFVAQVLVGKFT AKNVVMFVAQVLVGKFTEGNITYTSPPPQF K N V G K F 1 0 1 0 0 1 0 1 0 0 1 1 1 1 0 0 0 0 0 5 0 0 13 0 1402.8006 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 837 849 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 1.547E-06 108.67 2 2.3609 2.4232 1.641 2 Median 2.3609 2.4232 1.641 2 0 Median NaN NaN NaN 0 0 Median 10198000 2973400 7225000 10198000 2973400 7225000 0 0 0 10351 1873 10638 27466;27467 43020;43021;43022 43021 1724 3 NVVMVNQGLTK YTEESLLPVMQHLAKNVVMVNQGLTKHMTV HLAKNVVMVNQGLTKHMTVKNKYATSKHAK K N V T K H 0 0 2 0 0 1 0 1 0 0 1 1 1 0 0 0 1 0 0 3 0 0 11 0 1201.6489 P14635;E9PC90;H1UBN2 P14635 386 396 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 0.00034473 73.067 2 2 1.003 1.1415 31.014 4 Linear 0.97327 1.0638 5.7622 2 0 Median 0.78569 0.62365 1.0409 2 0 Median 105220000 51617000 53599000 99080000 48362000 50718000 6135600 3254800 2880900 10352 1483 10639 27468;27469;27470;27471 43023;43024;43025;43026;43027;43028;43029;43030 43026 1243 8 NVVTIFSAPNYCYR AHQLVMEGYNWCHDRNVVTIFSAPNYCYRC RNVVTIFSAPNYCYRCGNQAAIMELDDTLK R N V Y R C 1 1 2 0 1 0 0 0 0 1 0 0 0 1 1 1 1 0 2 2 0 0 14 0 1702.8137 Q6I9T8;B3KUN1;P67775;B3KQ51;Q8WZ56;Q5U0I7;B3KRM2;A0A140VJS0;P62714;H0YC23 Q6I9T8 255 268 PPP2CA;PPP2CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 2 5.7874E-06 93.058 2 1 1.2406 1.3022 NaN 1 Median 1.2406 1.3022 NaN 1 0 Median NaN NaN NaN 0 0 Median 20459000 6349700 14109000 19001000 6349700 12651000 1457400 0 1457400 10353 948 10640 27472;27473;27474 43031;43032;43033;43034;43035 43034 5 NVVVVDGVR VQTKTKKTLAKPNIRNVVVVDGVRTPFLLS AKPNIRNVVVVDGVRTPFLLSGTSYKDLMP R N V V R T 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5 0 0 9 0 955.54508 P55084;B4DY96;B5MD38;F5GZQ3;D6W539;C9JEY0;C9JE81;C9K0M0 P55084 53 61 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.0068692 66.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10354 1615 10641 27475 43036 43036 1 NVYLFPGIPELLR PCTGQPFRFPLVSVRNVYLFPGIPELLRRV VRNVYLFPGIPELLRRVLEGMKGLFQNPAV R N V L R R 0 1 1 0 0 0 1 1 0 1 3 0 0 1 2 0 0 0 1 1 0 0 13 0 1529.8606 Q5T196;B3KQW9;Q8NFF5 Q5T196 250 262 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region yes no 2 0.0045228 61.353 1 4.3287 4.3581 NaN 1 Median 4.3287 4.3581 NaN 1 0 Median NaN NaN NaN 0 0 Median 10792000 3467100 7324600 10792000 3467100 7324600 0 0 0 10355 931 10642 27476 43037 43037 0 NWFGLPGR GGSYGGAGQPQLISRNWFGLPGRLDAAMAG QPQLISRNWFGLPGRLDAAMAGHIYVSGSA R N W G R L 0 1 1 0 0 0 0 2 0 0 1 0 0 1 1 0 0 1 0 0 0 0 8 0 945.48209 CON__Q3ZBS7 CON__Q3ZBS7 342 349 yes yes 2 0.044709 52.018 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14414000 14414000 0 14414000 14414000 0 0 0 0 + 10356 1173 10643 27477 43038 43038 1 NWLLLSDVLK LPCYNIQVSVAQGPRNWLLLSDVLKKLKMS AQGPRNWLLLSDVLKKLKMSSRIFRCNFPN R N W L K K 0 0 1 1 0 0 0 0 0 0 4 1 0 0 0 1 0 1 0 1 0 0 10 0 1199.6914 H7C2V9;A6NE70;B3KTC2;H9A532;Q6W2J9 H7C2V9 532 541 BCOR BCL-6 corepressor yes no 2 0.009241 54.982 2 0.67143 0.75523 5.2727 2 Median 0.67143 0.75523 5.2727 2 0 Median NaN NaN NaN 0 0 Median 4536800 2790100 1746800 4536800 2790100 1746800 0 0 0 10357 678 10644 27478;27479 43039;43040 43040 2 NWPFLEGCACTPER AWQPFLKDHRISTFKNWPFLEGCACTPERM KNWPFLEGCACTPERMAEAGFIHCPTENEP K N W E R M 1 1 1 0 2 0 2 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 14 0 1735.7447 B7Z7B9;E7CU85;A0A0B4J1S3;O15392;A3E0Z5;H3BLT4;A3E0Z4;A3E0Z6;A3E0Z7;A3E0Z8 B7Z7B9 24 37 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 2 0.00019921 69.451 2 2 0.91891 0.89897 15.615 4 Median 0.71894 0.76731 10.039 2 0 Median 1.1581 0.98626 0.74707 2 0 Median 123530000 67686000 55842000 75782000 45837000 29945000 47747000 21849000 25897000 10358 498 10645 27480;27481;27482;27483 43041;43042;43043;43044;43045;43046;43047;43048;43049;43050 43042 10 NWQNVR NIHLAVNFLVSLLKKNWQNVRALYIKSTMG NFLVSLLKKNWQNVRALYIKSTMGKPQRLY K N W V R A 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 6 0 815.40383 P62906;Q1JQ76;A0A024RCW3 P62906 197 202 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 0.040624 107.29 1 0.81978 0.9694 NaN 1 Median 0.81978 0.9694 NaN 1 0 Median NaN NaN NaN 0 0 Median 273900000 148900000 125000000 273900000 148900000 125000000 0 0 0 10359 1651 10646 27484 43051 43051 1 NWVVVGGLNTHYR DAGKQGKVVQVIRQRNWVVVGGLNTHYRYI QRNWVVVGGLNTHYRYIGKTMDYRGTMIPS R N W Y R Y 0 1 2 0 0 0 0 2 1 0 1 0 0 0 0 0 1 1 1 3 0 0 13 0 1513.779 X6RJ73;Q96A35;X6RHI2 X6RJ73 84 96 MRPL24 39S ribosomal protein L24, mitochondrial yes no 2 0.01593 50.284 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10360 1957 10647 27485 43052 43052 1 NYDIGAALDTIQYSK FSDEGGWLTRLLQTKNYDIGAALDTIQYSK NYDIGAALDTIQYSKHPPPL__________ K N Y S K H 2 0 1 2 0 1 0 1 0 2 1 1 0 0 0 1 1 0 2 0 0 0 15 0 1670.8152 Q13501;B4E3V2;Q13502 Q13501 421 435 SQSTM1 Sequestosome-1 yes no 2 1.7301E-05 87.498 2 1 2.1305 1.6756 NaN 1 Median NaN NaN NaN 0 0 Median 2.1305 1.6756 NaN 1 0 Median 16457000 4818800 11638000 12468000 3693500 8774500 3989100 1125300 2863800 10361 1714 10648 27486;27487;27488 43053;43054;43055;43056 43056 4 NYDPALHPFEVPR NYVRETKLDLQRVPRNYDPALHPFEVPREY PRNYDPALHPFEVPREYIRALNATKLERVF R N Y P R E 1 1 1 1 0 0 1 0 1 0 1 0 0 1 3 0 0 0 1 1 0 0 13 0 1553.7627 A0A087WT20;Q9NV06;B3KME9;E5RHM4 A0A087WT20 179 191 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2;3 9.9955E-05 79.82 3 2 0.93504 0.97817 7.6426 5 Median 0.88021 0.97817 1.6532 3 0 Plateau 1.3368 1.1093 1.8715 2 0 Median 187600000 94419000 93180000 152960000 78644000 74319000 34637000 15776000 18861000 10362 402 10649 27489;27490;27491;27492;27493 43057;43058;43059;43060;43061;43062;43063;43064 43060 8 NYEDEDSLK EINNIIKIVGLQYKKNYEDEDSLKTLRYGK GLQYKKNYEDEDSLKTLRYGKIMIMTDQDQ K N Y L K T 0 0 1 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1111.4669 P11388 P11388 521 529 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.656E-06 136.27 2 2 1.0184 0.98905 14.616 4 Median 0.74726 0.8845 4.6992 2 0 Median 1.3403 1.1233 6.899 2 0 Median 1238100000 662490000 575610000 1019000000 567270000 451690000 219140000 95221000 123910000 10363 1471 10650 27494;27495;27496;27497 43065;43066;43067;43068;43069;43070;43071;43072 43068 8 NYEEALR AIDLVTKATEEDKAKNYEEALRLYQHAVEY ATEEDKAKNYEEALRLYQHAVEYFLHAIKY K N Y L R L 1 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 7 0 893.4243 A0A024R705;Q9UN37;I3L4J1 A0A024R705 24 30 VPS4A Vacuolar protein sorting-associated protein 4A yes no 2 0.045012 60.788 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5833400 0 5833400 5833400 0 5833400 0 0 0 10364 213 10651 27498 43073 43073 1 NYEGSPIK ______________________________ ______________________________ M N Y I K V 0 0 1 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 1 0 0 0 8 0 906.4447 E5RI98 E5RI98 2 9 NPM1 yes yes 2 0.013769 71.501 2 0.97614 0.96441 NaN 1 Median 0.97614 0.96441 NaN 1 0 Median NaN NaN NaN 0 0 Median 48319000 12366000 35953000 48319000 12366000 35953000 0 0 0 10365 1213 10652 27499;27500 43074;43075 43075 2 NYEVRPEMLK SLGVIKVISGFVKGRNYEVRPEMLKTFLCL FVKGRNYEVRPEMLKTFLCLRIKEVEVKKD R N Y L K T 0 1 1 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 1 1 0 0 10 1 1277.6438 A8K905;Q8WTT2;B4DXL4 A8K905 413 422 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.0014072 72.643 2 1.8934 2.0795 11.826 2 Median 1.8934 2.0795 11.826 2 0 Median NaN NaN NaN 0 0 Median 27557000 9430600 18126000 27557000 9430600 18126000 0 0 0 10366 780 10653 27501;27502 43076;43077 43076 610 2 NYFLEEDNYK ANAVLQALSNVPPLRNYFLEEDNYKNIKRP VPPLRNYFLEEDNYKNIKRPPGDIMFLLVQ R N Y Y K N 0 0 2 1 0 0 2 0 0 0 1 1 0 1 0 0 0 0 2 0 0 0 10 0 1333.5826 B9A018;Q53GS9;B7Z7L9;A0A087X1B2 B9A018 251 260 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.01807 54.608 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10367 1119 10654 27503 43078 43078 1 NYGFQIHTK DLSACYDVTEYPVQRNYGFQIHTKEGEFTL EYPVQRNYGFQIHTKEGEFTLSAMTSGIRR R N Y T K E 0 0 1 0 0 1 0 1 1 1 0 1 0 1 0 0 1 0 1 0 0 0 9 0 1106.5509 J3KSW8;U6FSN9;Q6WCQ1;B9EGI2;Q8N236;F6WMF4;F6WYE2;F6TR96;H0Y5J9;A0A1S5UZ31;Q9H2D6 J3KSW8 255 263 MPRIP;Mprip-Ntrk1 fusion gene;TRIOBP Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein;TRIO and F-actin-binding protein yes no 2 0.0089987 67.507 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6073000 0 6073000 5098700 0 5098700 974240 0 974240 10368 1330 10655 27504;27505 43079;43080 43079 2 NYGFVHIEDK LFEQYGKVLECDIIKNYGFVHIEDKTAAED CDIIKNYGFVHIEDKTAAEDAIRNLHHYKL K N Y D K T 0 0 1 1 0 0 1 1 1 1 0 1 0 1 0 0 0 0 1 1 0 0 10 0 1220.5826 A8K9U0;Q9BWF3;E9PB51;Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5 A8K9U0 36 45 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.00032108 90.108 1 1.1168 1.0942 NaN 1 Median 1.1168 1.0942 NaN 1 0 Median NaN NaN NaN 0 0 Median 22300000 9853300 12447000 22300000 9853300 12447000 0 0 0 10369 788 10656 27506 43081;43082 43081 2 NYGGTVAVTESGHTCQR PSSGPKYQCLKGTGKNYGGTVAVTESGHTC GGTVAVTESGHTCQRWSEQTPHKHNRTPEN K N Y Q R W 1 1 1 0 1 1 1 3 1 0 0 0 0 0 0 1 3 0 1 2 0 0 17 0 1835.8221 CON__P06868 CON__P06868 289 305 yes yes 2;3 7.5384E-145 237.41 4 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120800000 120800000 0 82577000 82577000 0 38224000 38224000 0 + 10370 1157 10657 27507;27508;27509;27510;27511;27512;27513 43083;43084;43085;43086;43087;43088;43089 43085 7 NYHPIVVPGLGR RMKKSDNKMGITPLRNYHPIVVPGLGRSLG PLRNYHPIVVPGLGRSLGFLPKMPRLRVVH R N Y G R S 0 1 1 0 0 0 0 2 1 1 1 0 0 0 2 0 0 0 1 2 0 0 12 0 1320.7303 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 778 789 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.00058999 68.735 1 1 1.0681 1.0037 23.263 2 Median 0.85024 0.85149 NaN 1 0 Median 1.3417 1.1832 NaN 1 0 Median 20656000 11173000 9483100 18771000 10462000 8309600 1885000 711500 1173500 10371 1699 10658 27514;27515 43090;43091;43092 43090 3 NYILDQTNVYGSAQR QCLNRLIQIAARKKRNYILDQTNVYGSAQR NYILDQTNVYGSAQRRKMRPFEGFQRKAIV R N Y Q R R 1 1 2 1 0 2 0 1 0 1 1 0 0 0 0 1 1 0 2 1 0 0 15 0 1740.8431 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0 M0R3F1 350 364 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 9.4333E-23 149.38 2 2 1.0626 1.0608 15.986 4 Linear 1.0504 1.0562 5.0925 2 0 Median 0.91545 0.80488 1.5453 2 0 Median 33941000 16500000 17441000 29650000 14154000 15496000 4290700 2345300 1945500 10372 49 10659 27516;27517;27518;27519 43093;43094;43095;43096;43097;43098;43099;43100 43097 8 NYIQGINLVQAK ______________________________ EIKNYIQGINLVQAKKLVESLPQEIKANVA K N Y A K K 1 0 2 0 0 2 0 1 0 2 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1359.751 Q96Q74;B4DLN1;P52815 Q96Q74 12 23 MRPL7/L12;MRPL12 39S ribosomal protein L12, mitochondrial yes no 2 0.00019051 76.827 2 0.72693 0.73684 32.861 2 Median 0.72693 0.73684 32.861 2 0 Median NaN NaN NaN 0 0 Median 25503000 14361000 11141000 25503000 14361000 11141000 0 0 0 10373 998 10660 27520;27521 43101;43102;43103;43104;43105 43101 5 NYLEGIYNVPVAAVR VQFRIPMEMTRVDLRNYLEGIYNVPVAAVR NYLEGIYNVPVAAVRTRVQHGSNKRRDHRN R N Y V R T 2 1 2 0 0 0 1 1 0 1 1 0 0 0 1 0 0 0 2 3 0 0 15 0 1676.8886 A0A024RCB2;Q16540;H7C2P7;B2R9J4;A6NJD9;A8MVT4;A8MYK1 A0A024RCB2 55 69 MRPL23 39S ribosomal protein L23, mitochondrial yes no 2 0.0024037 62.466 1 2 1.3786 1.1866 32.816 2 Median NaN NaN NaN 0 0 Median 1.3786 1.1866 32.816 2 0 Median 11161000 2442500 8718900 5688000 0 5688000 5473400 2442500 3030900 10374 357 10661 27522;27523;27524 43106;43107;43108;43109 43107 4 NYLNFVSPLPDIVGQK PKLIFKKGSRKNTDKNYLNFVSPLPDIVGQ YLNFVSPLPDIVGQKSLSGKPSGSLGIVSN K N Y Q K S 0 0 2 1 0 1 0 1 0 1 2 1 0 1 2 1 0 0 1 2 0 0 16 0 1802.9567 B3KMX4;B3KND7;B4DM04;Q9Y2X9 B3KMX4 45 60 ZNF281 Zinc finger protein 281 yes no 2 0.0036738 55.452 1 0.83283 0.86499 NaN 1 Median 0.83283 0.86499 NaN 1 0 Median NaN NaN NaN 0 0 Median 4656500 2208600 2447900 4656500 2208600 2447900 0 0 0 10375 909 10662 27525 43110 43110 0 NYLSLAPLFFK AAVNVICELARRNPKNYLSLAPLFFKLMTS RNPKNYLSLAPLFFKLMTSSTNNWVLIKII K N Y F K L 1 0 1 0 0 0 0 0 0 0 3 1 0 2 1 1 0 0 1 0 0 0 11 0 1311.7227 A0A087WYN6;Q6PK82;O14617 A0A087WYN6 44 54 AP3D1 AP-3 complex subunit delta-1 yes no 2 0.0015992 66.27 2 2.404 2.6392 69.444 2 Median 2.404 2.6392 69.444 2 0 Median NaN NaN NaN 0 0 Median 6134600 1929800 4204700 6134600 1929800 4204700 0 0 0 10376 434 10663 27526;27527 43111;43112;43113;43114 43112 4 NYPATVHGALLSGLR QPIPRLFFAGEHTIRNYPATVHGALLSGLR NYPATVHGALLSGLREAGRIADQFLGAMYT R N Y L R E 2 1 1 0 0 0 0 2 1 0 3 0 0 0 1 1 1 0 1 1 0 0 15 0 1567.8471 A8K2R3;O60341;R4GMP9 A8K2R3 684 698 KDM1A Lysine-specific histone demethylase 1A yes no 3 0.0078808 29.077 1 1 0.95138 0.87785 8.0373 2 Median 0.94421 0.92919 NaN 1 0 Median 0.9586 0.82935 NaN 1 0 Median 17056000 9784100 7272000 14447000 8466000 5981100 2609100 1318200 1290900 10377 711 10664 27528;27529 43115;43116;43117 43115 3 NYPDPVSIIQK LVLASDGQKMSKRKKNYPDPVSIIQKYGAD KRKKNYPDPVSIIQKYGADALRLYLINSPV K N Y Q K Y 0 0 1 1 0 1 0 0 0 2 0 1 0 0 2 1 0 0 1 1 0 0 11 0 1272.6714 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4 Q59G75 624 634 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0046185 65.933 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10191000 0 10191000 10191000 0 10191000 0 0 0 10378 1561 10665 27530 43118 43118 1 NYQQNYQNSESGEK RNHYRRYPRRRGPPRNYQQNYQNSESGEKN RNYQQNYQNSESGEKNEGSESAPEGQAQQR R N Y E K N 0 0 3 0 0 3 2 1 0 0 0 1 0 0 0 2 0 0 2 0 0 0 14 0 1687.7074 P67809;Q6PKI6;Q7KZ24;H0Y449;A0JLU4;C9J5V9;Q2VIK8 P67809 157 170 YBX1 Nuclease-sensitive element-binding protein 1 yes no 2 1.8403E-114 244.01 1 2.5293 2.48 NaN 1 Median 2.5293 2.48 NaN 1 0 Median NaN NaN NaN 0 0 Median 20669000 5630800 15039000 20669000 5630800 15039000 0 0 0 10379 1657 10666 27531 43119;43120 43119 2 NYQSQADIPIR INSSNVHVGSRGSKKNYQSQADIPIRSPFG GSKKNYQSQADIPIRSPFGIVKASWLPKFS K N Y I R S 1 1 1 1 0 2 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1303.6521 Q14966;D6W5H1;A8K583;A0A096LPH6;B4DF54 Q14966 372 382 ZNF638 Zinc finger protein 638 yes no 2 0.00068224 72.643 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10380 1746 10667 27532;27533 43121;43122 43122 2 NYSDGSETSSEFSK SSNPNLSTLDFGEEKNYSDGSETSSEFSKM KNYSDGSETSSEFSKMQEDLCHIAHKVYFT K N Y S K M 0 0 1 1 0 0 2 1 0 0 0 1 0 1 0 5 1 0 1 0 0 0 14 0 1536.6216 Q9H4L5 Q9H4L5 318 331 OSBPL3 Oxysterol-binding protein-related protein 3 yes yes 2 3.8972E-05 94.767 3 1.0004 1.0357 14.944 2 Median 1.0004 1.0357 14.944 2 0 Median NaN NaN NaN 0 0 Median 8846300 4583900 4262400 8846300 4583900 4262400 0 0 0 10381 2032 10668 27534;27535;27536 43123;43124;43125;43126 43123 4 NYSPYYNTIDDLK IQDWYDKKGPAAIQKNYSPYYNTIDDLKDQ QKNYSPYYNTIDDLKDQIVDLTVGNNKTLL K N Y L K D 0 0 2 2 0 0 0 0 0 1 1 1 0 0 1 1 1 0 3 0 0 0 13 0 1604.7359 CON__P35527;P35527 CON__P35527 200 212 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.8438E-38 167.12 5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1957100000 1957100000 0 1657000000 1657000000 0 300100000 300100000 0 + 10382 1165 10669 27537;27538;27539;27540;27541;27542;27543 43127;43128;43129;43130;43131;43132;43133;43134;43135;43136 43131 10 NYTDEAIETDDLTIK AIGRGAKSVREFLEKNYTDEAIETDDLTIK NYTDEAIETDDLTIKLVIKALLEVVQSGGK K N Y I K L 1 0 1 3 0 0 2 0 0 2 1 1 0 0 0 0 3 0 1 0 0 0 15 0 1739.8101 Q05DH1;A0A0K0K1K4;O14818;H0Y586 Q05DH1 175 189 PSMA7 Proteasome subunit alpha type;Proteasome subunit alpha type-7 yes no 2 4.3942E-15 127.71 3 0.701 0.71977 NaN 1 Median 0.701 0.71977 NaN 1 0 Median NaN NaN NaN 0 0 Median 17799000 9087600 8711900 17799000 9087600 8711900 0 0 0 10383 539 10670 27544;27545;27546 43137;43138;43139;43140 43140 4 NYTEEEDRFLICMLHK PFHQLRISYGTNKGKNYTEEEDRFLICMLH YTEEEDRFLICMLHKLGFDKENVYDELRQC K N Y H K L 0 1 1 1 1 0 3 0 1 1 2 1 1 1 0 0 1 0 1 0 0 0 16 1 2096.9659 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 946 961 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 3 0.00060633 45.723 2 5.7372 4.8618 10.688 2 Median NaN NaN NaN 0 0 Median 5.7372 4.8618 10.688 2 0 Median 18562000 2621400 15941000 0 0 0 18562000 2621400 15941000 10384 1391 10671 27547;27548 43141;43142 43141 2 NYYEQWGK FIGGLSFETTEESLRNYYEQWGKLTDCVVM TTEESLRNYYEQWGKLTDCVVMRDPASKRS R N Y G K L 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 2 0 0 0 8 0 1086.4771 P22626;A0A087WUI2;I6L957 P22626 39 46 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 0.011407 69.998 1 2.2551 2.3158 NaN 1 Median 2.2551 2.3158 NaN 1 0 Median NaN NaN NaN 0 0 Median 28659000 8710900 19948000 28659000 8710900 19948000 0 0 0 10385 1508 10672 27549 43143;43144 43143 2 NYYEVHK ESLLQLHDAEIVRLKNYYEVHKELFEGVQK DAEIVRLKNYYEVHKELFEGVQKWEETWRL K N Y H K E 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 2 1 0 0 7 0 951.44503 A0A024RC67;O43663;H0YL53 A0A024RC67 343 349 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.030635 68.422 1 1 0.85642 0.77414 28.396 2 Median 0.61789 0.63331 NaN 1 0 Median 1.187 0.94629 NaN 1 0 Median 38148000 22107000 16041000 28515000 17187000 11328000 9632800 4919700 4713100 10386 353 10673 27550;27551 43145;43146;43147;43148 43145 4 NYYQDTPK ENHGEDYKAMARDEKNYYQDTPKQIRSKIN AMARDEKNYYQDTPKQIRSKINVYKRFYPA K N Y P K Q 0 0 1 1 0 1 0 0 0 0 0 1 0 0 1 0 1 0 2 0 0 0 8 0 1027.4611 Q9Y3C1 Q9Y3C1 139 146 NOP16 Nucleolar protein 16 yes yes 2 0.00097085 121.99 2 1 0.85348 0.96288 19.347 3 Plateau 0.84919 0.91794 6.7595 2 0 Median 0.85348 0.66343 NaN 1 0 Median 95425000 51412000 44013000 80074000 43370000 36704000 15351000 8042600 7308300 10387 2135 10674 27552;27553;27554 43149;43150;43151;43152;43153 43150 5 PAAAATGPPPGNTSSTQK SQSQASRVLGQSSSKPAAAATGPPPGNTSS AATGPPPGNTSSTQKWKICTICNELFPENV K P A Q K W 4 0 1 0 0 1 0 2 0 0 0 1 0 0 4 2 3 0 0 0 0 0 18 0 1651.8166 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 428 445 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 8.1779E-06 97.911 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2538000 2538000 0 2538000 2538000 0 0 0 0 10388 878 10675 27555;27556 43154;43155 43155 2 PAAAPPPTPLR ALTLSLSEQVAAALKPAAAPPPTPLRADGA AALKPAAAPPPTPLRADGAPSAAPPDGLLA K P A L R A 3 1 0 0 0 0 0 0 0 0 1 0 0 0 5 0 1 0 0 0 0 0 11 0 1086.6186 P17535 P17535 64 74 JUND Transcription factor jun-D yes yes 2 0.0026867 76.827 2 0.47874 0.52411 NaN 1 Median 0.47874 0.52411 NaN 1 0 Median NaN NaN NaN 0 0 Median 50230000 39522000 10708000 50230000 39522000 10708000 0 0 0 10389 1492 10676 27557;27558 43156;43157;43158 43157 3 PAASLAVHTDK SADNTVILWDMSLGKPAASLAVHTDKVQTL SLGKPAASLAVHTDKVQTLQFHPFEAQTLI K P A D K V 3 0 0 1 0 0 0 0 1 0 1 1 0 0 1 1 1 0 0 1 0 0 11 0 1108.5877 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 291 301 PWP1 Periodic tryptophan protein 1 homolog yes no 2;3 1.4046E-52 208.11 4 2 1.0066 1.044 6.6467 6 Median 0.96543 1.044 6.9538 4 0 Median 1.2976 1.0394 8.1408 2 0 Median 212480000 105320000 107160000 199270000 99648000 99622000 13210000 5672700 7536900 10390 339 10677 27559;27560;27561;27562;27563;27564 43159;43160;43161;43162;43163;43164;43165;43166;43167 43159 9 PAASSPETPSAGQQEAK PHNDTEIANSTPNPKPAASSPETPSAGQQE ASSPETPSAGQQEAKTDQADGPREPPQSAR K P A A K T 4 0 0 0 0 2 2 1 0 0 0 1 0 0 3 3 1 0 0 0 0 0 17 0 1654.7798 Q9NQS7;B3KPD3 Q9NQS7 417 433 INCENP Inner centromere protein yes no 2 1.5275E-12 146.36 2 1 1.077 1.1194 18.439 3 Median 0.99914 1.0327 11.401 2 0 Median 1.7372 1.3763 NaN 1 0 Median 32587000 15885000 16702000 28609000 14474000 14135000 3978500 1411000 2567500 10391 2059 10678 27565;27566;27567 43168;43169;43170;43171;43172 43169 5 PAAVVAPITTGYTVK QQKSQKKAELLDNEKPAAVVAPITTGYTVK PAAVVAPITTGYTVKISNYGWDQSDKFVKI K P A V K I 3 0 0 0 0 0 0 1 0 1 0 1 0 0 2 0 3 0 1 3 0 0 15 0 1486.8395 Q6NVY0;A0A024R904;Q9HB71;B4DFD3 Q6NVY0 60 74 CACYBP Calcyclin-binding protein yes no 2 0.00018076 77.593 1 1 4.066 4.0158 NaN 1 Median 4.066 4.0158 NaN 1 0 Median NaN NaN NaN 0 0 Median 26561000 7044200 19516000 25422000 7044200 18378000 1138700 0 1138700 10392 267 10679 27568;27569 43173;43174 43173 2 PADEIAVDR IYSVTRKRYAHLSARPADEIAVDRDVPWGV AHLSARPADEIAVDRDVPWGVDSLITLAFQ R P A D R D 2 1 0 2 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 9 0 984.48762 B3KTA3;Q16658 B3KTA3 138 146 FSCN1 Fascin yes no 2 0.0019674 78.516 1 4.2422 4.3151 NaN 1 Median 4.2422 4.3151 NaN 1 0 Median NaN NaN NaN 0 0 Median 20474000 4804100 15670000 20474000 4804100 15670000 0 0 0 10393 942 10680 27570 43175 43175 1 PADTEPPPLLVYK WYEADKRRLFPPWIKPADTEPPPLLVYKWC IKPADTEPPPLLVYKWCQGINNLQDVWETS K P A Y K W 1 0 0 1 0 0 1 0 0 0 2 1 0 0 4 0 1 0 1 1 0 0 13 0 1438.7708 Q6P2Q9;I3L0J9 Q6P2Q9 942 954 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 8.997E-19 142.83 2 2 0.86916 0.78315 6.8549 3 Plateau 0.70695 0.78315 NaN 1 0 Median 0.89876 0.70939 5.3625 2 0 Median 73520000 48728000 24793000 65399000 44379000 21020000 8121400 4348900 3772400 10394 1854 10681 27571;27572;27573;27574 43176;43177;43178;43179;43180;43181;43182 43178 7 PAEEQLDVGQSK KRTIKQKQRRKFMAKPAEEQLDVGQSKDEN MAKPAEEQLDVGQSKDENIHTSHITQDEFQ K P A S K D 1 0 0 1 0 2 2 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1299.6307 Q03188;H0Y8J2 Q03188 429 440 CENPC Centromere protein C yes no 2 4.1449E-18 146.16 2 2 0.78546 0.61868 32.645 3 Median 0.51821 0.53554 NaN 1 0 Median 0.9662 0.78622 33.89 2 0 Median 40342000 26989000 13353000 35902000 24585000 11317000 4440000 2403700 2036300 10395 1681 10682 27575;27576;27577;27578 43183;43184;43185;43186;43187 43185 5 PAEFTVDAK ARGPGLEKTGVAVNKPAEFTVDAKHGGKAP GVAVNKPAEFTVDAKHGGKAPLRVQVQDNE K P A A K H 2 0 0 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 9 0 976.48656 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 692 700 FLNA Filamin-A yes no 2 0.0010561 90.601 1 1.168 1.3143 NaN 1 Median 1.168 1.3143 NaN 1 0 Median NaN NaN NaN 0 0 Median 120780000 68899000 51882000 120780000 68899000 51882000 0 0 0 10396 1504 10683 27579 43188 43188 1 PAEPPAWAGGAR VAVGKPRAGGDAEPRPAEPPAWAGGARPGP EPRPAEPPAWAGGARPGPGVWDPNWDRREP R P A A R P 4 1 0 0 0 0 1 2 0 0 0 0 0 0 3 0 0 1 0 0 0 0 12 0 1178.5833 Q96HS1 Q96HS1 41 52 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.0022901 68.335 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11399000 0 11399000 11399000 0 11399000 0 0 0 10397 1972 10684 27580;27581 43189;43190 43189 2 PAFEEFCLPTK RDLEQILSQYITFVKPAFEEFCLPTKKYAD TFVKPAFEEFCLPTKKYADVIIPRGADNLV K P A T K K 1 0 0 0 1 0 2 0 0 0 1 1 0 2 2 0 1 0 0 0 0 0 11 0 1337.6326 A0A024R912;Q9BZX2;A0A0S2Z5Y6;A0A0S2Z601;Q9HA47 A0A024R912 191 201 UCK2;UCK1 Uridine kinase;Uridine-cytidine kinase 2;Uridine-cytidine kinase 1 yes no 2 0.01046 58.592 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10398 268 10685 27582 43191 43191 1 PAFPGYGVQDSSPYPGR RGSKALPTQQGLQGRPAFPGYGVQDSSPYP FPGYGVQDSSPYPGRYAGEESLQAWGAPQP R P A G R Y 1 1 0 1 0 1 0 3 0 0 0 0 0 1 4 2 0 0 2 1 0 0 17 0 1793.8373 Q7Z5J4;A8MXE8 Q7Z5J4 95 111 RAI1 Retinoic acid-induced protein 1 yes no 2 0.0089859 44.616 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1166400 0 1166400 0 0 0 1166400 0 1166400 10399 1879 10686 27583 43192 43192 1 PAGPTVEQQGEMAR IVEGKKVGTFFSEVKPAGPTVEQQGEMARS KPAGPTVEQQGEMARSGGRMLATLEPEQRA K P A A R S 2 1 0 0 0 2 2 2 0 0 0 0 1 0 2 0 1 0 0 1 0 0 14 0 1469.6933 P54886 P54886 358 371 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 2.5729E-30 159.94 2 2.3386 2.4878 4.0637 2 Median 2.3386 2.4878 4.0637 2 0 Median NaN NaN NaN 0 0 Median 63746000 19195000 44550000 63746000 19195000 44550000 0 0 0 10400 1611 10687 27584;27585 43193;43194;43195 43195 1401 3 PAGQNLQGIEDK KRREWKSILLDMATRPAGQNLQGIEDKITK ATRPAGQNLQGIEDKITKMKVTMVAWDRHD R P A D K I 1 0 1 1 0 2 1 2 0 1 1 1 0 0 1 0 0 0 0 0 0 0 12 0 1268.6361 Q8WWQ0 Q8WWQ0 410 421 PHIP PH-interacting protein yes yes 2 8.6935E-104 244.16 1 2 1.0447 0.85616 49.513 3 Median 0.38424 0.42934 NaN 1 0 Median 1.2075 0.97982 19.08 2 0 Median 69669000 47573000 22096000 53079000 40339000 12740000 16590000 7234400 9355800 10401 1942 10688 27586;27587;27588 43196;43197;43198 43196 3 PAGVLGAVNK ISEETRVLLLTGKPKPAGVLGAVNKPLSAT TGKPKPAGVLGAVNKPLSATGRKPYVRSTG K P A N K P 2 0 1 0 0 0 0 2 0 0 1 1 0 0 1 0 0 0 0 2 0 0 10 0 924.53927 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1137 1146 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.003548 76.134 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6791500 0 6791500 6791500 0 6791500 0 0 0 10402 1270 10689 27589 43199 43199 1 PAHVVVGDVLQAADVDK VLVRDSSRLPSEGPRPAHVVVGDVLQAADV HVVVGDVLQAADVDKTVAGQDAVIVLLGTR R P A D K T 3 0 0 3 0 1 0 1 1 0 1 1 0 0 1 0 0 0 0 5 0 0 17 0 1731.9155 V9HWI1;P30043;M0QZL1;M0R192 V9HWI1 47 63 HEL-S-10;BLVRB Flavin reductase (NADPH) yes no 3 4.9073E-05 67.415 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7963500 0 7963500 7963500 0 7963500 0 0 0 10403 1528 10690 27590 43200 43200 1 PAIAEYIVK KGKAITPKDNNKTLKPAIAEYIVKKAKQRI NNKTLKPAIAEYIVKKAKQRIALQRWQDEL K P A V K K 2 0 0 0 0 0 1 0 0 2 0 1 0 0 1 0 0 0 1 1 0 0 9 0 1002.575 Q9H5I1;C9IYH9;C9JMB4 Q9H5I1 121 129 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 yes no 2 0.023689 48.561 1 1.218 0.95459 NaN 1 Median NaN NaN NaN 0 0 Median 1.218 0.95459 NaN 1 0 Median 2070700 960320 1110400 0 0 0 2070700 960320 1110400 10404 2036 10691 27591 43201 43201 1 PAISNILNR DDDELIFVGEISSSKPAISNILNRGHSSSS EISSSKPAISNILNRGHSSSSSKGIKSEPH K P A N R G 1 1 2 0 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 0 9 0 996.57163 Q8ND82;Q9UJJ2;H0YN90;A8K124;B4DHL1;A0A024R5W1;Q6N043;H0YLA6;H0YL38 Q8ND82 56 64 ZNF280C;ZNF280D;SUHW4 Zinc finger protein 280C;Zinc finger protein 280D no no 2 0.0047844 68.383 1 2 1.3189 1.2066 28.821 2 Median 0.98558 0.98413 NaN 1 0 Median 1.765 1.4793 NaN 1 0 Median 22663000 9753500 12909000 16612000 8390000 8221900 6050800 1363600 4687200 10405 1924;189 10692 27592;27593;27594 43202;43203;43204 43203 3 PALPAGTEDTAK EGTEPEAMLQVLGPKPALPAGTEDTAKEDA GPKPALPAGTEDTAKEDAANRKLAKLYKVS K P A A K E 3 0 0 1 0 0 1 1 0 0 1 1 0 0 2 0 2 0 0 0 0 0 12 0 1169.5928 Q5T0I0;B7Z4U6;B7Z992;A0A0A0MS51;B7Z9A0;B7Z6N2;A0A0A0MT01;CON__Q3SX14;P06396;B7Z2X4;B3KS49 Q5T0I0 227 238 GSN Gelsolin yes no 2 0.0066799 61.65 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13107000 13107000 0 13107000 13107000 0 0 0 0 + 10406 474 10693 27595;27596 43205;43206 43206 2 PALPGADGTPFGCPPGR TGPDSPSPVPLPPGKPALPGADGTPFGCPP LPGADGTPFGCPPGRKEKPSDPVEWTVMDV K P A G R K 2 1 0 1 1 0 0 4 0 0 1 0 0 1 5 0 1 0 0 0 0 0 17 0 1665.7933 Q6SPF0;E9PIW9;F8WDT5 Q6SPF0 436 452 SAMD1 Atherin yes no 2 0.00044749 65.395 1 2 1.2065 1.0672 11.045 2 Median NaN NaN NaN 0 0 Median 1.2065 1.0672 11.045 2 0 Median 13262000 2075400 11187000 8491000 0 8491000 4771400 2075400 2696000 10407 1861 10694 27597;27598;27599 43207;43208;43209;43210 43207 4 PANFLDLGGGVK LAMATCDIIFLNGGKPANFLDLGGGVKEAQ GGKPANFLDLGGGVKEAQVYQAFKLLTADP K P A V K E 1 0 1 1 0 0 0 3 0 0 2 1 0 1 1 0 0 0 0 1 0 0 12 0 1186.6346 A0A024R325;Q96I99;Q3ZCW5;E9PDQ8;B7Z2D5 A0A024R325 327 338 SUCLG2 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.040233 62.869 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10408 126 10695 27600 43211 43211 1 PANIFLGPR LAHLHSQGLVHLDVKPANIFLGPRGRCKLG VHLDVKPANIFLGPRGRCKLGDFGLLVELG K P A P R G 1 1 1 0 0 0 0 1 0 1 1 0 0 1 2 0 0 0 0 0 0 0 9 0 983.55525 A6NHV6;Q0IJ49;B4DZM6;Q99640;I3L136 A6NHV6 227 235 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase yes no 2 0.030795 45.718 2 0.81391 0.7059 1.4923 2 Median NaN NaN NaN 0 0 Median 0.81391 0.7059 1.4923 2 0 Median 134900000 75063000 59838000 0 0 0 134900000 75063000 59838000 10409 685 10696 27601;27602 43212;43213 43212 2 PANSVFTTK SFPIRRLSTPSSVTKPANSVFTTKWIWYWK PSSVTKPANSVFTTKWIWYWKNESGTWIQY K P A T K W 1 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 2 0 0 1 0 0 9 0 963.50255 Q7Z2W4;A8K9U6;C9J6P4;Q05DV5;H7C5K1 Q7Z2W4 598 606 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 5.5067E-08 144.5 2 1.2299 1.29 3.6272 2 Median 1.2299 1.29 3.6272 2 0 Median NaN NaN NaN 0 0 Median 70903000 32849000 38054000 70903000 32849000 38054000 0 0 0 10410 1873 10697 27603;27604 43214;43215;43216;43217;43218 43218 5 PAPIYILDEVDAALDLSHTQNIGQMLR SLVALSLILSMLLFKPAPIYILDEVDAALD ALDLSHTQNIGQMLRTHFTHSQFIVVSLKE K P A L R T 3 1 1 3 0 2 1 1 1 3 4 0 1 0 2 1 1 0 1 1 0 0 27 0 2992.5328 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1 A0A024R158 1106 1132 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 1.5013E-27 101.3 1 1.5944 1.8467 NaN 1 Median 1.5944 1.8467 NaN 1 0 Median NaN NaN NaN 0 0 Median 285600000 139050000 146550000 285600000 139050000 146550000 0 0 0 10411 69 10698 27605 43219;43220 43219 41 2 PAPNAAPVDPTLR QSVKAREEGRAPEQRPAPNAAPVDPTLRTK QRPAPNAAPVDPTLRTKQPIPAAYNRYDQE R P A L R T 3 1 1 1 0 0 0 0 0 0 1 0 0 0 4 0 1 0 0 1 0 0 13 0 1317.7041 Q6P1J9;A0A0S2Z5M9;B4DV47;A0A0S2Z5N1 Q6P1J9 269 281 CDC73 Parafibromin yes no 2 0.00077554 79.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8346100 0 8346100 8346100 0 8346100 0 0 0 10412 1851 10699 27606 43221 43221 1 PAPPKPEPK VKDEPQRRSARLSAKPAPPKPEPKPKKAPA ARLSAKPAPPKPEPKPKKAPAKKGEKVPKG K P A P K P 1 0 0 0 0 0 1 0 0 0 0 2 0 0 5 0 0 0 0 0 0 0 9 1 959.54402 P05204;A0A087WZE9;Q15651 P05204 32 40 HMGN2;HMGN3 Non-histone chromosomal protein HMG-17;High mobility group nucleosome-binding domain-containing protein 3 yes no 3 0.014973 52.937 2 1 0.44064 0.43462 88.919 2 Median 0.71262 0.81504 NaN 1 0 Median 0.27246 0.23177 NaN 1 0 Median 269130000 255050000 14081000 237640000 230520000 7110800 31494000 24524000 6970300 10413 1446 10700 27607;27608;27609 43222;43223;43224;43225 43222 4 PAPPKPEPKPK VKDEPQRRSARLSAKPAPPKPEPKPKKAPA LSAKPAPPKPEPKPKKAPAKKGEKVPKGKK K P A P K K 1 0 0 0 0 0 1 0 0 0 0 3 0 0 6 0 0 0 0 0 0 0 11 2 1184.6917 P05204 P05204 32 42 HMGN2 Non-histone chromosomal protein HMG-17 yes yes 2;3 0.027388 64.654 2 0.23951 0.23688 26.181 2 Median NaN NaN NaN 0 0 Median 0.23951 0.23688 26.181 2 0 Median 12126000 10467000 1659500 0 0 0 12126000 10467000 1659500 10414 1446 10701 27610;27611 43226;43227 43226 2 PAPPKPEPR VKDEPQRRSARLSAKPAPPKPEPRPKKASA ARLSAKPAPPKPEPRPKKASAKKGEKLPKG K P A P R P 1 1 0 0 0 0 1 0 0 0 0 1 0 0 5 0 0 0 0 0 0 0 9 1 987.55016 A0A024R046;O00479 A0A024R046 32 40 HMGN4 High mobility group nucleosome-binding domain-containing protein 4 yes no 2;3 2.9779E-06 131.06 4 4 0.55097 0.69134 54.658 8 Linear 0.50273 0.60164 7.8014 4 0 Median 0.2475 0.21571 7.4027 4 0 Median 890520000 579230000 311290000 804040000 510050000 293990000 86485000 69179000 17306000 10415 36 10702 27612;27613;27614;27615;27616;27617;27618;27619 43228;43229;43230;43231;43232;43233;43234;43235;43236;43237;43238;43239;43240 43229 13 PAPPPTIEEK AMCAKAGVPLPPNLKPAPPPTIEEKVAKKS PPNLKPAPPPTIEEKVAKKSGGATIEELTE K P A E K V 1 0 0 0 0 0 2 0 0 1 0 1 0 0 4 0 1 0 0 0 0 0 10 0 1077.5706 P18583;Q6ZRV7;J3QSZ5;B3KRA1;H7C1M2;H7C2G8 P18583 2083 2092 SON Protein SON yes no 2 0.039494 47.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10416 1499 10703 27620 43241 43241 1 PAPPQTEQVESK KVLVPGIPGHHAAIKPAPPQTEQVESKRKS AIKPAPPQTEQVESKRKSGGNEVSIEERLG K P A S K R 1 0 0 0 0 2 2 0 0 0 0 1 0 0 3 1 1 0 0 1 0 0 12 0 1309.6514 Q15061 Q15061 417 428 WDR43 WD repeat-containing protein 43 yes yes 2 2.1832E-13 150.04 2 2 1.0523 0.99191 4.9541 4 Median 0.91744 1.0351 1.5228 2 0 Median 1.207 0.9522 1.2726 2 0 Median 253460000 127730000 125730000 225560000 114860000 110700000 27900000 12870000 15030000 10417 1752 10704 27621;27622;27623;27624 43242;43243;43244;43245;43246;43247;43248;43249 43245 8 PAPYIIFGPPGTGK EQLQAMRHIVTGTTRPAPYIIFGPPGTGKT RPAPYIIFGPPGTGKTVTLVEAIKQVVKHL R P A G K T 1 0 0 0 0 0 0 3 0 2 0 1 0 1 4 0 1 0 1 0 0 0 14 0 1413.7656 B7Z700;Q5JR04;Q9HCE1 B7Z700 455 468 MOV10 Putative helicase MOV-10 yes no 2 0.0067802 54.259 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3269400 0 3269400 3269400 0 3269400 0 0 0 10418 1102 10705 27625 43250 43250 1 PAQNYDDNFNVNGPGEGVK PKQKLSKKQKKKKQKPAQNYDDNFNVNGPG YDDNFNVNGPGEGVKVDPEDTNLNQDSAKE K P A V K V 1 0 4 2 0 1 1 3 0 0 0 1 0 1 2 0 0 0 1 2 0 0 19 0 2033.9079 Q5F1R6 Q5F1R6 393 411 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 3.3102E-05 54.524 1 0.60066 0.5963 NaN 1 Median 0.60066 0.5963 NaN 1 0 Median NaN NaN NaN 0 0 Median 6086300 3637800 2448500 6086300 3637800 2448500 0 0 0 10419 1806 10706 27626 43251;43252 43252 2 PAQPALSR PSLALNIIQNRNMGKPAQPALSREELEALF QNRNMGKPAQPALSREELEALFLPYDLKRL K P A S R E 2 1 0 0 0 1 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 8 0 838.4661 Q9H0A0;A0A087WV29 Q9H0A0 803 810 NAT10 N-acetyltransferase 10 yes no 2 0.0077322 81.784 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11495000 0 11495000 11495000 0 11495000 0 0 0 10420 2023 10707 27627 43253 43253 1 PAQPALSREELEALFLPYDLK PSLALNIIQNRNMGKPAQPALSREELEALF SREELEALFLPYDLKRLEMYSRNMVDYHLI K P A L K R 3 1 0 1 0 1 3 0 0 0 5 1 0 1 3 1 0 0 1 0 0 0 21 1 2399.2737 Q9H0A0;A0A087WV29 Q9H0A0 803 823 NAT10 N-acetyltransferase 10 yes no 3 1.091E-08 77.391 2 2 1.2135 1.2045 14.926 4 Median 0.93744 1.0649 2.7645 2 0 Median 1.5575 1.373 3.8638 2 0 Median 386640000 159860000 226780000 69344000 35409000 33935000 317300000 124450000 192840000 10421 2023 10708 27628;27629;27630;27631 43254;43255;43256;43257;43258;43259;43260;43261;43262;43263;43264 43259 11 PASANISLYER WYHVLKGEKTFYLIRPASANISLYERWRSA YLIRPASANISLYERWRSASNHSEMFFADQ R P A E R W 2 1 1 0 0 0 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 0 11 0 1219.6197 O75151 O75151 273 283 PHF2 Lysine-specific demethylase PHF2 yes yes 2 1.7293E-05 105.98 2 1 1.248 1.3075 13.469 3 Median 1.1703 1.1928 12.987 2 0 Median 1.6331 1.4148 NaN 1 0 Median 30259000 11673000 18586000 28268000 10906000 17362000 1991500 767030 1224500 10422 1400 10709 27632;27633;27634 43265;43266;43267;43268 43266 4 PASGPIRPIVR RRKARQAKARRIAPRPASGPIRPIVRCTTV IAPRPASGPIRPIVRCTTVRYHTKVRAGRG R P A V R C 1 2 0 0 0 0 0 1 0 2 0 0 0 0 3 1 0 0 0 1 0 0 11 1 1161.6982 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 50 60 RPL13 60S ribosomal protein L13 yes no 3 1.2724E-05 101.97 2 0.89155 1.0375 1.7612 2 Median 0.89155 1.0375 1.7612 2 0 Median NaN NaN NaN 0 0 Median 1891500000 960120000 931340000 1891500000 960120000 931340000 0 0 0 10423 733 10710 27635;27636 43269;43270 43269 2 PASISEEELLNLINK RAAAVVGINSETIMKPASISEEELLNLINK PASISEEELLNLINKLNNDDNVDGLLVQLP K P A N K L 1 0 2 0 0 0 3 0 0 2 3 1 0 0 1 2 0 0 0 0 0 0 15 0 1668.8934 B2R7W0;P13995 B2R7W0 99 113 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 2 1.5912E-70 203.11 1 1 2.046 1.8297 110.87 2 Median 3.909 4.0074 NaN 1 0 Median 1.0708 0.83542 NaN 1 0 Median 14235000 3894400 10341000 10598000 2086200 8511500 3637400 1808200 1829200 10424 853 10711 27637;27638 43271;43272;43273 43271 3 PATAIGVIGNFTDAER EAFTVDKDITLTNDKPATAIGVIGNFTDAE ATAIGVIGNFTDAERRKCEEEIAKLYKQLD K P A E R R 3 1 1 1 0 0 1 2 0 2 0 0 0 1 1 0 2 0 0 1 0 0 16 0 1630.8315 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89 V9HW29 403 418 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 3.9323E-13 116.24 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11855000 0 11855000 11855000 0 11855000 0 0 0 10425 1186 10712 27639 43274;43275 43274 2 PATFTVNTK VTAYGPGLTHGVVNKPATFTVNTKDAGEGG HGVVNKPATFTVNTKDAGEGGLSLAIEGPS K P A T K D 1 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 3 0 0 1 0 0 9 0 977.5182 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5F3 P21333 1883 1891 FLNA;FLJ00119 Filamin-A yes no 2 0.00249 74.2 1 1.4403 1.4696 NaN 1 Median 1.4403 1.4696 NaN 1 0 Median NaN NaN NaN 0 0 Median 14259000 6194500 8064200 14259000 6194500 8064200 0 0 0 10426 1504 10713 27640 43276 43276 1 PATLLWLIQK SDGEEKEEVKEELGRPATLLWLIQKLSRIA EELGRPATLLWLIQKLSRIAKLEAAYSPRN R P A Q K L 1 0 0 0 0 1 0 0 0 1 3 1 0 0 1 0 1 1 0 0 0 0 10 0 1181.7172 O75691;B4DN27 O75691 2616 2625 UTP20 Small subunit processome component 20 homolog yes no 2 1.848E-08 122.19 2 1.3212 1.326 0.85193 2 Median 1.3212 1.326 0.85193 2 0 Median NaN NaN NaN 0 0 Median 10501000 4942300 5559200 10501000 4942300 5559200 0 0 0 10427 1412 10714 27641;27642 43277;43278;43279;43280 43277 4 PAVCYQAITK ADPHFHHFLLSQTEKPAVCYQAITKKLKIC SQTEKPAVCYQAITKKLKICEEETGSTSIQ K P A T K K 2 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 1 0 1 1 0 0 10 0 1149.5852 D3DUE7;Q49A26;K7EPU6 D3DUE7 250 259 N-PAC;GLYR1 Putative oxidoreductase GLYR1 yes no 2 0.061197 34.803 1 1.9581 1.5678 NaN 1 Median NaN NaN NaN 0 0 Median 1.9581 1.5678 NaN 1 0 Median 8577300 2762500 5814700 0 0 0 8577300 2762500 5814700 10428 1194 10715 27643 43281 43281 1 PAVFIPVNR PPPAAAPPLPRALAKPAVFIPVNRSPEMQE PRALAKPAVFIPVNRSPEMQEERLKLPILS K P A N R S 1 1 1 0 0 0 0 0 0 1 0 0 0 1 2 0 0 0 0 2 0 0 9 0 1011.5866 Q8IY37;F5H3Y4 Q8IY37 233 241 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.004769 71.715 1 2 0.9018 0.78711 NaN 1 Median NaN NaN NaN 0 0 Median 0.9018 0.78711 NaN 1 0 Median 5742100 4199400 1542600 3681100 3681100 0 2061000 518350 1542600 10429 1897 10716 27644;27645;27646 43282;43283;43284;43285 43285 4 PAVPETAGIK KAPKKKLPQKKEAEKPAVPETAGIKFPDFK KEAEKPAVPETAGIKFPDFKSAGVTLRSQR K P A I K F 2 0 0 0 0 0 1 1 0 1 0 1 0 0 2 0 1 0 0 1 0 0 10 0 981.5495 B4DQG8;Q9NPF5 B4DQG8 292 301 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.0045454 72.23 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10023000 0 10023000 10023000 0 10023000 0 0 0 10430 1024 10717 27647 43286 43286 1 PAVTQLLWER LEEILCEFVQKDELKPAVTQLLWERATEKV KDELKPAVTQLLWERATEKVACCPLERCSS K P A E R A 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 1 1 0 1 0 0 10 0 1211.6663 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 750 759 NCAPD2 Condensin complex subunit 1 yes no 2 1.2004E-16 160.36 2 2 0.74321 0.85423 36.663 3 Median 0.73238 0.80793 7.8805 2 0 Median 1.7116 1.5134 NaN 1 0 Median 125730000 69723000 56009000 118310000 68607000 49705000 7418500 1115300 6303200 10431 908 10718 27648;27649;27650;27651 43287;43288;43289;43290 43287 4 PAVTTLVVK GGVRLVTPVTVSAVKPAVTTLVVKGTTGVT TVSAVKPAVTTLVVKGTTGVTTLGTVTGTV K P A V K G 1 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 2 0 0 3 0 0 9 0 926.58007 A6NEM2;P51610 A6NEM2 867 875 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.0018009 80.684 2 0.74828 0.77868 9.8304 2 Median 0.74828 0.77868 9.8304 2 0 Median NaN NaN NaN 0 0 Median 37780000 20424000 17356000 37780000 20424000 17356000 0 0 0 10432 680 10719 27652;27653 43291;43292;43293 43292 3 PDPSGECNPDLR SSDVLVFDYTKHPAKPDPSGECNPDLRLRG PAKPDPSGECNPDLRLRGHQKEGYGLSWNS K P D L R L 0 1 1 2 1 0 1 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 12 0 1355.5776 Q09028;Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP01 Q6FHQ0 160 171 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.00018807 88.596 2 1.0032 1.0131 10.512 2 Median 1.0032 1.0131 10.512 2 0 Median NaN NaN NaN 0 0 Median 15389000 7119900 8268700 15389000 7119900 8268700 0 0 0 10433 1771;1695 10720 27654;27655 43294;43295;43296 43296 3 PEFLEDPSVLTK ______________________________ ______________________________ M P E T K D 0 0 0 1 0 0 2 0 0 0 2 1 0 1 2 1 1 0 0 1 0 0 12 0 1373.7078 A0A024RBE7;P42167;G5E972;A0A024RBH7;P42166 P42166 2 13 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2 0.050203 52.247 1 0.88001 0.68392 NaN 1 Median NaN NaN NaN 0 0 Median 0.88001 0.68392 NaN 1 0 Median 15232000 8810200 6422200 0 0 0 15232000 8810200 6422200 10434 334;1562 10721 27656 43297 43297 0 PENLLLGLK LMYCHGKKVIHRDIKPENLLLGLKGELKIA IHRDIKPENLLLGLKGELKIADFGWSVHAP K P E L K G 0 0 1 0 0 0 1 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 9 0 995.60153 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 Q96GD4 203 211 AURKB Aurora kinase B no no 2 0.052145 46.335 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5474700 0 5474700 5474700 0 5474700 0 0 0 10435 881;1967 10722 27657 43298 43298 1 PFADTLDQVNISK KLKGLFTLFAGHLVKPFADTLDQVNISKTD VKPFADTLDQVNISKTDEAFFDSENDPEKC K P F S K T 1 0 1 2 0 1 0 0 0 1 1 1 0 1 1 1 1 0 0 1 0 0 13 0 1446.7355 B2RWN5;B4E263;Q8N7L7;Q96ES5 B2RWN5 1961 1973 HEATR1 yes no 2 1.1619E-18 140.57 2 0.90988 1.0216 1.2729 2 Median 0.90988 1.0216 1.2729 2 0 Median NaN NaN NaN 0 0 Median 171250000 89266000 81986000 171250000 89266000 81986000 0 0 0 10436 897 10723 27658;27659 43299;43300;43301;43302 43299 4 PFFAAISDEK GMPTIQITALEKITKPFFAAISDEKVQQKL EKITKPFFAAISDEKVQQKLLRMLFDLLVN K P F E K V 2 0 0 1 0 0 1 0 0 1 0 1 0 2 1 1 0 0 0 0 0 0 10 0 1123.555 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8 B2RWN5 1113 1122 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 2.3914E-08 121.09 2 2 1.0888 1.0187 4.4956 4 Median 0.94869 1.0453 5.7947 2 0 Median 1.2458 1.0076 3.6872 2 0 Median 126540000 61710000 64829000 109660000 54125000 55532000 16883000 7585600 9297100 10437 897 10724 27660;27661;27662;27663 43303;43304;43305;43306;43307;43308;43309;43310 43306 8 PFGNSISR ARREVEVKLTPLILKPFGNSISRYNGEPEH LTPLILKPFGNSISRYNGEPEHIERNDAPH K P F S R Y 0 1 1 0 0 0 0 1 0 1 0 0 0 1 1 2 0 0 0 0 0 0 8 0 876.44537 Q14739;A0A024R3R5;C9JXK0 Q14739 124 131 LBR Lamin-B receptor yes no 2 0.013465 65.252 1 1.4509 1.504 NaN 1 Median 1.4509 1.504 NaN 1 0 Median NaN NaN NaN 0 0 Median 22832000 10050000 12782000 22832000 10050000 12782000 0 0 0 10438 1743 10725 27664 43311 43311 1 PFGSEEQLLPVEK RKGYEEVHVPALKPKPFGSEEQLLPVEKLP PKPFGSEEQLLPVEKLPKYAQAGFEGFKTL K P F E K L 0 0 0 0 0 1 3 1 0 0 2 1 0 1 2 1 0 0 0 1 0 0 13 0 1471.7559 O75643;A4FU77;Q9H8B9 O75643 454 466 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 3.3092E-19 147.72 2 2 1.1714 1.3019 NaN 1 Median 1.1714 1.3019 NaN 1 0 Median NaN NaN NaN 0 0 Median 66932000 43319000 23613000 61630000 38017000 23613000 5301800 5301800 0 10439 1411 10726 27665;27666;27667;27668 43312;43313;43314;43315;43316 43314 5 PFGVALLFGGVDEK LQFGEEDADPGAMSRPFGVALLFGGVDEKG RPFGVALLFGGVDEKGPQLFHMDPSGTFVQ R P F E K G 1 0 0 1 0 0 1 3 0 0 2 1 0 2 1 0 0 0 0 2 0 0 14 0 1447.7711 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 136 149 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 2 3.2742E-09 113.38 2 1.8419 1.8622 3.6897 2 Median 1.8419 1.8622 3.6897 2 0 Median NaN NaN NaN 0 0 Median 19865000 6542600 13323000 19865000 6542600 13323000 0 0 0 10440 595 10727 27669;27670 43317;43318 43318 1 PFLASLDGHR IRALNATKLERVFAKPFLASLDGHRDGVNC RVFAKPFLASLDGHRDGVNCLAKHPEKLAT K P F H R D 1 1 0 1 0 0 0 1 1 0 2 0 0 1 1 1 0 0 0 0 0 0 10 0 1111.5774 A0A087WT20;Q9NV06;B3KME9;E5RHM4 A0A087WT20 209 218 DCAF13 DDB1- and CUL4-associated factor 13 yes no 3 0.00012938 87.149 2 0.87036 0.89225 8.9942 2 Median 0.87036 0.89225 8.9942 2 0 Median NaN NaN NaN 0 0 Median 41460000 17591000 23869000 41460000 17591000 23869000 0 0 0 10441 402 10728 27671;27672 43319;43320;43321;43322 43320 4 PFLFDTK MSRAKHHAISAKLNKPFLFDTKPLIVQYEV AISAKLNKPFLFDTKPLIVQYEVNFQNGIE K P F T K P 0 0 0 1 0 0 0 0 0 0 1 1 0 2 1 0 1 0 0 0 0 0 7 0 866.4538 P27824;H0Y9Q7;Q16094;D6RGY2;Q6ZP56;D6RFL1;D6RB85;D6RDP7;H0Y9H1 P27824 138 144 CANX Calnexin yes no 2 0.030163 69.176 1 0.912 0.91036 NaN 1 Median 0.912 0.91036 NaN 1 0 Median NaN NaN NaN 0 0 Median 14753000 7199100 7554000 14753000 7199100 7554000 0 0 0 10442 1526 10729 27673 43323 43323 1 PFLGIGLK EVLGGEFLKYMEAFKPFLGIGLKNYAEYQV KYMEAFKPFLGIGLKNYAEYQVCLAAVGLV K P F L K N 0 0 0 0 0 0 0 2 0 1 2 1 0 1 1 0 0 0 0 0 0 0 8 0 843.52182 B2RBR9;Q14974;B7Z5M1;J3KTM9;B7Z752 B2RBR9 652 659 KPNB1 Importin subunit beta-1 yes no 2 0.02605 64.803 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10443 880 10730 27674 43324 43324 1 PFLLPVEAVYSVPGR AVDTYIPVPARDLEKPFLLPVEAVYSVPGR PFLLPVEAVYSVPGRGTVVTGTLERGILKK K P F G R G 1 1 0 0 0 0 1 1 0 0 2 0 0 1 3 1 0 0 1 3 0 0 15 0 1642.9083 P49411 P49411 257 271 TUFM Elongation factor Tu, mitochondrial yes yes 2 1.0758E-10 122.51 2 1.673 1.8598 5.3501 2 Median 1.673 1.8598 5.3501 2 0 Median NaN NaN NaN 0 0 Median 116950000 43547000 73399000 116950000 43547000 73399000 0 0 0 10444 1580 10731 27675;27676 43325;43326 43326 2 PFLWLAR QYYDISAKSNYNFEKPFLWLARKLIGDPNL KSNYNFEKPFLWLARKLIGDPNLEFVAMPA K P F A R K 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 1 0 0 0 0 7 0 901.51741 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 177 183 RAN GTP-binding nuclear protein Ran yes no 2 0.025889 88.627 2 2 1.9848 1.428 37.869 4 Linear 1.9388 2.0027 3.5187 2 0 Median 1.2265 1.0403 0.48084 2 0 Median 48137000 18965000 29172000 41356000 15784000 25572000 6780600 3180700 3599900 10445 1082 10732 27677;27678;27679;27680 43327;43328;43329;43330;43331;43332 43330 6 PFNGEDYTCITFQPDLSK TWMDNMGRAGEMELKPFNGEDYTCITFQPD GEDYTCITFQPDLSKFKMQSLDKDIVALMV K P F S K F 0 0 1 2 1 1 1 1 0 1 1 1 0 2 2 1 2 0 1 0 0 0 18 0 2130.9568 P11388 P11388 208 225 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.4668E-22 128.54 2 2 0.99942 0.97415 24.553 4 Median 0.69652 0.78796 1.2446 2 0 Median 1.4251 1.2051 1.3351 2 0 Median 380630000 202790000 177840000 265140000 156600000 108540000 115490000 46188000 69302000 10446 1471 10733 27681;27682;27683;27684 43333;43334;43335;43336;43337;43338;43339 43336 7 PFNLSQGK PSSPARVTKGCTIVKPFNLSQGKKRTFDET KGCTIVKPFNLSQGKKRTFDETVSTYVPLA K P F G K K 0 0 1 0 0 1 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 8 0 889.46577 Q643R0;Q9ULW0;B3KM90 Q643R0 306 313 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.0079734 81.119 1 2 1.2301 0.99022 3.5651 2 Median NaN NaN NaN 0 0 Median 1.2301 0.99022 3.5651 2 0 Median 22974000 5084500 17890000 11277000 0 11277000 11697000 5084500 6612500 10447 1837 10734 27685;27686;27687 43340;43341;43342 43340 3 PFQCTFEGCGK SSKLKRHQLVHTGEKPFQCTFEGCGKRFSL TGEKPFQCTFEGCGKRFSLDFNLRTHVRIH K P F G K R 0 0 0 0 2 1 1 2 0 0 0 1 0 2 1 0 1 0 0 0 0 0 11 0 1329.5482 P25490;O15391 P25490 352 362 YY1;YY2 Transcriptional repressor protein YY1;Transcription factor YY2 yes no 2 0.0020164 63.076 2 1.0312 0.8587 5.8295 2 Median NaN NaN NaN 0 0 Median 1.0312 0.8587 5.8295 2 0 Median 3803900 1860000 1943900 0 0 0 3803900 1860000 1943900 10448 1516 10735 27688;27689 43343;43344 43343 2 PFSQFWQPLLR KSHKNVDLNDVLVPKPFSQFWQPLLRGLHS LVPKPFSQFWQPLLRGLHSQNFTQALLERM K P F L R G 0 1 0 0 0 2 0 0 0 0 2 0 0 2 2 1 0 1 0 0 0 0 11 0 1417.7507 Q9Y4W2 Q9Y4W2 377 387 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 0.027154 40.352 1 0.81011 0.73123 NaN 1 Median NaN NaN NaN 0 0 Median 0.81011 0.73123 NaN 1 0 Median 736070 588380 147690 0 0 0 736070 588380 147690 10449 2146 10736 27690 43345 43345 1 PFSVDFFR YKKARAVFKSLQESRPFSVDFFRKMIQFEK KSLQESRPFSVDFFRKMIQFEKEQESCNMA R P F F R K 0 1 0 1 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 1 0 0 8 0 1013.4971 B3KQ21;Q9NYH9;B3KX32;Q9P1J8;J3KRR8;J3QSA7 B3KQ21 505 512 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.0059196 88.942 2 2 1.2238 1.1452 8.3447 4 Median 1.0319 1.0984 0.29786 2 0 Median 1.4486 1.2488 6.6483 2 0 Median 61161000 30741000 30420000 52840000 27132000 25708000 8320900 3609000 4711900 10450 925 10737 27691;27692;27693;27694 43346;43347;43348;43349;43350;43351;43352 43349 7 PFTIDVDK LHKYQKMLEPPPSAKPFTIDVDKKLEEGQK EPPPSAKPFTIDVDKKLEEGQKNIRLLRTE K P F D K K 0 0 0 2 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 8 0 933.48075 O95235 O95235 725 732 KIF20A Kinesin-like protein KIF20A yes yes 2 0.0045182 93.374 2 3 0.76178 0.7762 2.567 2 Median 0.76178 0.7762 2.567 2 0 Median NaN NaN NaN 0 0 Median 55921000 32418000 23503000 48296000 28996000 19300000 7625400 3422600 4202800 10451 1421 10738 27695;27696;27697;27698;27699 43353;43354;43355;43356;43357;43358;43359 43356 7 PFVPNVHAAEFVPSFLR PLSSAFSRKLNVNAKPFVPNVHAAEFVPSF VPNVHAAEFVPSFLRGPTQPPTLPAGSGSN K P F L R G 2 1 1 0 0 0 1 0 1 0 1 0 0 3 3 1 0 0 0 3 0 0 17 0 1926.0152 Q8IYD1 Q8IYD1 58 74 GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes yes 3 0.00096039 36.193 1 5.2003 5.3237 NaN 1 Median 5.2003 5.3237 NaN 1 0 Median NaN NaN NaN 0 0 Median 14504000 1873000 12631000 14504000 1873000 12631000 0 0 0 10452 1899 10739 27700 43360 43360 1 PFYLVPK QNWLSAKVRKQLRLKPFYLVPKHAKEGNGF VRKQLRLKPFYLVPKHAKEGNGFQEETWRL K P F P K H 0 0 0 0 0 0 0 0 0 0 1 1 0 1 2 0 0 0 1 1 0 0 7 0 862.49528 Q8N884 Q8N884 356 362 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.04457 61.006 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20544000 0 20544000 20544000 0 20544000 0 0 0 10453 1914 10740 27701 43361 43361 1 PGAEQSFLYGNHVLK LDYLAPYAKYKVWIKPGAEQSFLYGNHVLK PGAEQSFLYGNHVLKSGLGRITENTSQYQG K P G L K S 1 0 1 0 0 1 1 2 1 0 2 1 0 1 1 1 0 0 1 1 0 0 15 0 1658.8417 Q9Y221;J3QRD6;J3QRR4 Q9Y221 101 115 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 3 1.3127E-15 111.12 2 2 1.1061 1.0469 11.662 4 Median 1.0205 1.1637 2.3341 2 0 Median 1.1824 0.95231 0.75723 2 0 Median 366720000 176060000 190660000 323700000 156510000 167190000 43023000 19546000 23476000 10454 2119 10741 27702;27703;27704;27705 43362;43363;43364;43365;43366;43367;43368 43363 7 PGAHLTVK VVEPKRAVSREDSQRPGAHLTVKKIFVGGI SREDSQRPGAHLTVKKIFVGGIKEDTEEHH R P G V K K 1 0 0 0 0 0 0 1 1 0 1 1 0 0 1 0 1 0 0 1 0 0 8 0 821.47594 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q9BSM5;Q0VAC0;Q6IPF2;F8VZ49;A0A024RC46;A0A024QZ98;Q32P51;F8VYN5;F8VTQ5;B4DP35;F8W646;P51991;B4E3E6;B4DDB6;Q65ZQ3 F8W6I7 98 105 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2;HNRNPA3;HNRPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoprotein A3 no no 2 0.0030157 104.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8121800 0 8121800 8121800 0 8121800 0 0 0 10455 317;1598 10742 27706 43369 43369 1 PGDLIFAK ______________________________ ______________________________ K P G A K M 1 0 0 1 0 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 8 0 859.48035 O75475;Q05CM9;Q8N4N4 O75475 7 14 PSIP1 PC4 and SFRS1-interacting protein no no 2 0.0087497 77.282 2 0.72375 0.74476 2.1893 2 Median 0.72375 0.74476 2.1893 2 0 Median NaN NaN NaN 0 0 Median 53936000 29667000 24269000 53936000 29667000 24269000 0 0 0 10456 1405;1908 10743 27707;27708 43370;43371;43372;43373 43372 4 PGEGTAPLPPPGQK SPAGETEGDREPQARPGEGTAPLPPPGQKV RPGEGTAPLPPPGQKVGGSQPPFQGQREPG R P G Q K V 1 0 0 0 0 1 1 3 0 0 1 1 0 0 5 0 1 0 0 0 0 0 14 0 1344.7038 Q9BTC0 Q9BTC0 1729 1742 DIDO1 Death-inducer obliterator 1 yes yes 2 0.048229 25.979 1 2.5254 2.2338 NaN 1 Median NaN NaN NaN 0 0 Median 2.5254 2.2338 NaN 1 0 Median 874830 262130 612700 0 0 0 874830 262130 612700 10457 2002 10744 27709 43374 43374 1 PGELCAQHFTLS PVPLEFIPAQGLLGRPGELCAQHFTLS___ LGRPGELCAQHFTLS_______________ R P G L S - 1 0 0 0 1 1 1 1 1 0 2 0 0 1 1 1 1 0 0 0 0 0 12 0 1358.6289 Q9BVI4 Q9BVI4 505 516 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.00052134 88.056 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10925000 0 0 9033500 0 0 1891600 0 0 10458 2007 10745 27710;27711 43375;43376;43377 43376 3 PGEYSYFSPR GDGDIRTMCPLLSMKPGEYSYFSPRTMSMW LLSMKPGEYSYFSPRTMSMWAGPDHWRFRP K P G P R T 0 1 0 0 0 0 1 1 0 0 0 0 0 1 2 2 0 0 2 0 0 0 10 0 1201.5404 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 425 434 NCAPH Condensin complex subunit 2 yes no 2 4.0436E-05 89.247 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10459 740 10746 27712 43378 43378 1 PGFSIADK SIGIYGLDFYVVLGRPGFSIADKKRRTGCI FYVVLGRPGFSIADKKRRTGCIGAKHRISK R P G D K K 1 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 833.42832 Q08ES8;Q5VVD0;P62913;Q5VVC8 Q08ES8 136 143 RPL11 60S ribosomal protein L11 yes no 2 0.0028899 98.523 2 0.9271 1.0962 0.63436 2 Median 0.9271 1.0962 0.63436 2 0 Median NaN NaN NaN 0 0 Median 1009700000 512240000 497500000 1009700000 512240000 497500000 0 0 0 10460 1652 10747 27713;27714 43379;43380;43381;43382 43380 4 PGFSIADKK SIGIYGLDFYVVLGRPGFSIADKKRRTGCI YVVLGRPGFSIADKKRRTGCIGAKHRISKE R P G K K R 1 0 0 1 0 0 0 1 0 1 0 2 0 1 1 1 0 0 0 0 0 0 9 1 961.52328 Q08ES8;Q5VVD0;P62913;Q5VVC8 Q08ES8 136 144 RPL11 60S ribosomal protein L11 yes no 2;3 2.3945E-11 151.97 4 3 1.0368 1.1691 17.643 7 Median 1.0348 1.2135 3.312 4 0 Median 1.1003 0.942 7.5064 3 0 Plateau 472860000 242730000 230130000 444680000 228920000 215760000 28176000 13814000 14363000 10461 1652 10748 27715;27716;27717;27718;27719;27720;27721 43383;43384;43385;43386;43387;43388;43389;43390;43391;43392 43386 10 PGGLGSSSLYGLGASR AFSGRGAQVRLSSARPGGLGSSSLYGLGAS GGLGSSSLYGLGASRPRVAVRSAYGGPVGA R P G S R P 1 1 0 0 0 0 0 5 0 0 3 0 0 0 1 4 0 0 1 0 0 0 16 0 1477.7525 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 31 46 KRT7 Keratin, type II cytoskeletal 7 no no 2 1.1553E-17 132.5 2 1.5493 1.6353 8.8481 2 Median 1.5493 1.6353 8.8481 2 0 Median NaN NaN NaN 0 0 Median 61624000 26583000 35041000 61624000 26583000 35041000 0 0 0 + 10462 1171;1158 10749 27722;27723 43393;43394;43395;43396 43393 4 PGGLGSSSLYGLGASRPR AFSGRGAQVRLSSARPGGLGSSSLYGLGAS LGSSSLYGLGASRPRVAVRSAYGGPVGAGI R P G P R V 1 2 0 0 0 0 0 5 0 0 3 0 0 0 2 4 0 0 1 0 0 0 18 1 1730.9064 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 31 48 KRT7 Keratin, type II cytoskeletal 7 no no 3 0.02535 33.697 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 10463 1171;1158 10750 27724 43397 43397 1 PGGLLLGDVAPNFEANTTVGR ______________________________ GDVAPNFEANTTVGRIRFHDFLGDSWGILF M P G G R I 2 1 2 1 0 0 1 4 0 0 3 0 0 1 2 0 2 0 0 2 0 0 21 0 2097.0855 V9HWC7;P30041;B4DUK1 V9HWC7 2 22 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 3.9051E-06 62.162 2 2.6839 2.3292 NaN 1 Median NaN NaN NaN 0 0 Median 2.6839 2.3292 NaN 1 0 Median 6701400 1759200 4942200 0 0 0 6701400 1759200 4942200 10464 1527 10751 27725;27726 43398;43399;43400 43398 3 PGGNVEGATQSLAEQMR KSSSQPSSCCSDPSKPGGNVEGATQSLAEQ GNVEGATQSLAEQMRKIALESEGRPEEQME K P G M R K 2 1 1 0 0 2 2 3 0 0 1 0 1 0 1 1 1 0 0 1 0 0 17 0 1743.821 Q13501;B4E3V2;E7EMC7 Q13501 296 312 SQSTM1 Sequestosome-1 yes no 2 1.0714E-19 127.71 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14627000 0 14627000 14627000 0 14627000 0 0 0 10465 1714 10752 27727;27728;27729 43401;43402;43403 43403 1544 3 PGHIINPIK QRAFQKLTTPKVVTKPGHIINPIKAEDVGY PKVVTKPGHIINPIKAEDVGYRSSSRSDLS K P G I K A 0 0 1 0 0 0 0 1 1 3 0 1 0 0 2 0 0 0 0 0 0 0 9 0 987.58655 Q9BVJ6;B4E343 Q9BVJ6 725 733 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2;3 1.8777E-05 111.65 3 0.95843 1.0292 11.338 2 Median 0.95843 1.0292 11.338 2 0 Median NaN NaN NaN 0 0 Median 97211000 48734000 48476000 97211000 48734000 48476000 0 0 0 10466 2008 10753 27730;27731;27732 43404;43405;43406;43407 43407 4 PGHLQEGFGCVVTNR ______________________________ PGHLQEGFGCVVTNRFDQLFDDESDPFEVL M P G N R F 0 1 1 0 1 1 1 3 1 0 1 0 0 1 1 0 1 0 0 2 0 0 15 0 1669.7995 Q63HR1;Q5VU21;Q8NC51 Q63HR1 2 16 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 3 0.06 14.419 1 1.1798 1.036 NaN 1 Median NaN NaN NaN 0 0 Median 1.1798 1.036 NaN 1 0 Median 1779200 898670 880500 0 0 0 1779200 898670 880500 10467 1832 10754 27733 43408 43408 1 PGHLQFYSLQSDK LMIDPRTKALVLNGKPGHLQFYSLQSDKQL GKPGHLQFYSLQSDKQLYNLDIIQQEYIND K P G D K Q 0 0 0 1 0 2 0 1 1 0 2 1 0 1 1 2 0 0 1 0 0 0 13 0 1518.7467 A8K330;Q8IWA0 A8K330 355 367 WDR75 WD repeat-containing protein 75 yes no 3 0.0014379 42.797 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18729000 18729000 0 18729000 18729000 0 0 0 0 10468 716 10755 27734;27735 43409;43410 43410 2 PGHPLQPDFFLDEYPEAVSK LKEEGIENFDVYAIKPGHPLQPDFFLDEYP QPDFFLDEYPEAVSKKVESTGAVPEFKEEK K P G S K K 1 0 0 2 0 1 2 1 1 0 2 1 0 2 4 1 0 0 1 1 0 0 20 0 2285.1004 B2R923;A0A024R159;Q6YN16;B4DWC7;B4E136 B2R923 191 210 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 3 1.8262E-05 59.342 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6263700 0 6263700 6263700 0 6263700 0 0 0 10469 70 10756 27736 43411 43411 1 PGLNVVLEGPK TDRELQDAFSRGLLKPGLNVVLEGPKKAVN GLLKPGLNVVLEGPKKAVNDVNGLKQCLAE K P G P K K 0 0 1 0 0 0 1 2 0 0 2 1 0 0 2 0 0 0 0 2 0 0 11 0 1121.6445 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 34 44 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 3.0526E-17 160.53 3 2 0.96927 0.97444 18.997 4 Median 0.96424 1.1386 0.62269 2 0 Median 0.99132 0.82049 2.9219 2 0 Median 1169600000 601080000 568500000 1092200000 562800000 529440000 77349000 38280000 39068000 10470 1316 10757 27737;27738;27739;27740;27741 43412;43413;43414;43415;43416;43417;43418;43419;43420;43421;43422;43423;43424;43425 43413 14 PGLNVVLEGPKK TDRELQDAFSRGLLKPGLNVVLEGPKKAVN LLKPGLNVVLEGPKKAVNDVNGLKQCLAEF K P G K K A 0 0 1 0 0 0 1 2 0 0 2 2 0 0 2 0 0 0 0 2 0 0 12 1 1249.7394 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 34 45 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2;3 5.2829E-05 89.301 2 3 1.0526 1.0941 16.862 5 Median 1.0132 1.1865 6.3978 2 0 Median 1.0526 0.89124 14.2 3 0 Median 252630000 114950000 137680000 202930000 92978000 109950000 49703000 21970000 27733000 10471 1316 10758 27742;27743;27744;27745;27746 43426;43427;43428;43429;43430;43431;43432;43433 43427 8 PGLQTHGFIIR IESKLPVITCYADAKPGLQTHGFIIRVKDY ADAKPGLQTHGFIIRVKDYGCIVKFYNNVQ K P G I R V 0 1 0 0 0 1 0 2 1 2 1 0 0 1 1 0 1 0 0 0 0 0 11 0 1237.6931 Q14690;B4DH82;B4DES7 Q14690 541 551 PDCD11 Protein RRP5 homolog yes no 3 1.5245E-08 117.52 2 2 1.1487 1.0976 10.937 4 Median 1.0891 1.2033 1.804 2 0 Median 1.186 0.99784 2.2677 2 0 Median 112910000 53222000 59689000 96527000 46120000 50406000 16384000 7101300 9283100 10472 1741 10759 27747;27748;27749;27750 43434;43435;43436;43437;43438;43439;43440 43436 7 PGLTYQEALESEK ILCNSLVWSCAVTGRPGLTYQEALESEKKA GRPGLTYQEALESEKKARQNLQSFPEPLII R P G E K K 1 0 0 0 0 1 3 1 0 0 2 1 0 0 1 1 1 0 1 0 0 0 13 0 1463.7144 D3DS96;Q9NRL2;Q05CW0;Q32ND1 D3DS96 60 72 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.0038515 63.624 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11983000 0 11983000 10274000 0 10274000 1708500 0 1708500 10473 1187 10760 27751;27752 43441;43442 43441 2 PGMLLTGTVSSLEDHGYLVDIGVDGTR NPKNVNRVLSAEALKPGMLLTGTVSSLEDH EDHGYLVDIGVDGTRAFLPLLKAQEYIRQK K P G T R A 0 1 0 3 0 0 1 5 1 1 4 0 1 0 1 2 3 0 1 3 0 0 27 0 2801.3906 Q14690;B4DES7 Q14690 186 212 PDCD11 Protein RRP5 homolog yes no 3 1.3881E-22 92.275 1 1.462 1.5751 NaN 1 Median 1.462 1.5751 NaN 1 0 Median NaN NaN NaN 0 0 Median 25899000 8931900 16967000 25899000 8931900 16967000 0 0 0 10474 1741 10761 27753 43443 43443 1585 1 PGMVVTFAPVNVTTEVK IGTVPVGRVETGVLKPGMVVTFAPVNVTTE MVVTFAPVNVTTEVKSVEMHHEALSEALPG K P G V K S 1 0 1 0 0 0 1 1 0 0 0 1 1 1 2 0 3 0 0 5 0 0 17 0 1787.9492 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q9NZS6;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q14222;Q53HR1 Q6IPT9 274 290 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 no no 2 1.1617E-26 150.06 4 6 1.9581 1.6206 55.637 10 Median 3.7825 4.5021 38.155 4 0 Linear 1.8824 1.5575 33.793 6 0 Median 1278800000 318840000 959990000 1136400000 262810000 873580000 142430000 56022000 86408000 10475 1658;1790 10762;10763 27754;27755;27756;27757;27758;27759;27760;27761;27762;27763 43444;43445;43446;43447;43448;43449;43450;43451;43452;43453;43454;43455;43456;43457;43458;43459;43460;43461;43462 43448 1438;1656 18 PGNFPSLAVSSNEFEPSNSHMVK GKKQVPLNPDLNQTKPGNFPSLAVSSNEFE VSSNEFEPSNSHMVKSYSLLFRVTRPGRRE K P G V K S 1 0 3 0 0 0 2 1 1 0 1 1 1 2 3 5 0 0 0 2 0 0 23 0 2474.1536 J3QQW9;Q15022;A8K1U9 J3QQW9 201 223 SUZ12 Polycomb protein SUZ12 yes no 3 0.0020511 40.668 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8436100 0 8436100 8436100 0 8436100 0 0 0 10476 1336 10764 27764 43463 43463 1009 1 PGNQNTQVTEAWNK KAAHLCAEAALRLVKPGNQNTQVTEAWNKV KPGNQNTQVTEAWNKVAHSFNCTPIEGMLS K P G N K V 1 0 3 0 0 2 1 1 0 0 0 1 0 0 1 0 2 1 0 1 0 0 14 0 1585.7485 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08;F8VR77;H0YIN7;F8W0A3 A8K6Y1 159 172 PA2G4 Proliferation-associated protein 2G4 yes no 2 1.6838E-37 165.35 2 2.5323 2.5865 15.409 2 Median 2.5323 2.5865 15.409 2 0 Median NaN NaN NaN 0 0 Median 43397000 14321000 29076000 43397000 14321000 29076000 0 0 0 10477 328 10765 27765;27766 43464;43465;43466;43467 43467 4 PGPDTFPDYGDVLR RYPEVNRRIERLINKPGPDTFPDYGDVLRA KPGPDTFPDYGDVLRAVEKAAARHSLGLPR K P G L R A 0 1 0 3 0 0 0 2 0 0 1 0 0 1 3 0 1 0 1 1 0 0 14 0 1547.7256 Q59FG7;Q53F85;B2R7M0;A8K822;A0A024RCS3;B4E1C1;Q9UER7 Q59FG7 209 222 DAXX Death domain-associated protein 6 yes no 2 0.0034976 61.958 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5817800 5817800 0 5817800 5817800 0 0 0 0 10478 370 10766 27767 43468;43469 43468 2 PGPGLSSQTAGAAGWR AGFLKTVGLFAGRGRPGPGLSSQTAGAAGW GPGLSSQTAGAAGWRRSGSNGGGQAPGASP R P G W R R 3 1 0 0 0 1 0 4 0 0 1 0 0 0 2 2 1 1 0 0 0 0 16 0 1511.7481 P38432 P38432 353 368 COIL Coilin yes yes 2 0.027137 25.194 1 0.52643 0.45382 NaN 1 Median NaN NaN NaN 0 0 Median 0.52643 0.45382 NaN 1 0 Median 1667400 957610 709780 0 0 0 1667400 957610 709780 10479 1552 10767 27768 43470 43470 1 PGPRPPAGELGSIGDHER AYGGKAAPAAPPAARPGPRPPAGELGSIGD RPPAGELGSIGDHERAIDFSPYLEPLGAPQ R P G E R A 1 2 0 1 0 0 2 4 1 1 1 0 0 0 4 1 0 0 0 0 0 0 18 1 1840.918 P17676;W8SNV5;W8SNU6 P17676 54 71 CEBPB CCAAT/enhancer-binding protein beta yes no 4 0.060987 4.9784 1 1.4124 1.2766 NaN 1 Median NaN NaN NaN 0 0 Median 1.4124 1.2766 NaN 1 0 Median 3017000 1434600 1582400 0 0 0 3017000 1434600 1582400 10480 1493 10768 27769 43471 43471 1 PGPTAESASGPSEDPSVNFLK PGNWSPRPPRAGEARPGPTAESASGPSEDP SASGPSEDPSVNFLKNVGESVAAALSPLGI R P G L K N 2 0 1 1 0 0 2 2 0 0 1 1 0 1 4 4 1 0 0 1 0 0 21 0 2085.9855 Q13501;B4E3V2;E7EMC7;E9PFW8;E3WH17 Q13501 218 238 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 2 3.5351E-38 150.22 2 1.8785 1.9038 2.3916 2 Median 1.8785 1.9038 2.3916 2 0 Median NaN NaN NaN 0 0 Median 55976000 18893000 37082000 55976000 18893000 37082000 0 0 0 10481 1714 10769 27770;27771 43472;43473;43474;43475;43476 43472 5 PGPTPSGTNVGSSGR ______________________________ PGPTPSGTNVGSSGRSPSKAVAARAAGSTV M P G G R S 0 1 1 0 0 0 0 4 0 0 0 0 0 0 3 3 2 0 0 1 0 0 15 0 1369.6586 Q53FA5;P60468 Q53FA5 2 16 SEC61B Protein transport protein Sec61 subunit beta yes no 2 5.8712E-06 96.103 2 1.7578 1.7702 24.043 2 Median 1.7578 1.7702 24.043 2 0 Median NaN NaN NaN 0 0 Median 15003000 6048400 8954500 15003000 6048400 8954500 0 0 0 10482 1623 10770 27772;27773 43477;43478;43479 43479 3 PGPYDRPGTAR RSYSDPPLKFMSVQRPGPYDRPGTARRYIG SVQRPGPYDRPGTARRYIGIVKQAGLERMR R P G A R R 1 2 0 1 0 0 0 2 0 0 0 0 0 0 3 0 1 0 1 0 0 0 11 1 1185.5891 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 207 217 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2;3 9.5492E-09 104.79 3 1.4374 1.5906 5.1594 2 Median 1.4374 1.5906 5.1594 2 0 Median NaN NaN NaN 0 0 Median 62067000 22647000 39420000 62067000 22647000 39420000 0 0 0 10483 234 10771 27774;27775;27776 43480;43481;43482 43480 3 PGQPLFLDSISPK RGLRRDSITPDIATKPGQPLFLDSISPKKS TKPGQPLFLDSISPKKSFKTRKQKSSSKAE K P G P K K 0 0 0 1 0 1 0 1 0 1 2 1 0 1 3 2 0 0 0 0 0 0 13 0 1397.7555 Q2TB10;B7Z4V7;Q49A13 Q2TB10 326 338 ZNF800 Zinc finger protein 800 yes no 2 0.00015821 72.531 1 2 1.8557 1.5646 24.341 3 Median 1.1979 1.2075 NaN 1 0 Median 2.1514 1.753 16.077 2 0 Median 9567100 3699400 5867700 5418400 2232100 3186300 4148700 1467300 2681500 10484 1777 10772 27777;27778;27779 43483;43484;43485 43483 3 PGSDTIKPDVQK QFTDKHGEVCPAGWKPGSDTIKPDVQKSKE GWKPGSDTIKPDVQKSKEYFSKQK______ K P G Q K S 0 0 0 2 0 1 0 1 0 1 0 2 0 0 2 1 1 0 0 1 0 0 12 1 1283.6721 Q06830;A0A0A0MRQ5 Q06830 179 190 PRDX1 Peroxiredoxin-1 yes no 2;3 6.2217E-73 219.03 4 3.6227 4.1944 11.089 4 Median 3.6227 4.1944 11.089 4 0 Median NaN NaN NaN 0 0 Median 161050000 34646000 126410000 161050000 34646000 126410000 0 0 0 10485 1690 10773 27780;27781;27782;27783 43486;43487;43488;43489;43490 43489 5 PGSIDSNNQLFAPGGR GSRPIDTSRLTKITKPGSIDSNNQLFAPGG GSIDSNNQLFAPGGRLSWGKGSSGGSGAKP K P G G R L 1 1 2 1 0 1 0 3 0 1 1 0 0 1 2 2 0 0 0 0 0 0 16 0 1628.7907 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;Q96I65 E7EX73 912 927 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 5.3533E-81 204.85 1 1 2.0013 1.9073 17.775 2 Median 2.0775 2.1627 NaN 1 0 Median 1.928 1.682 NaN 1 0 Median 23120000 7916700 15203000 21842000 7420100 14422000 1277700 496650 781060 10486 896 10774 27784;27785 43491;43492;43493 43492 3 PGSLLLCEGPCCGAFHLACLGLSR GVTAKKEYVCQLCEKPGSLLLCEGPCCGAF PCCGAFHLACLGLSRRPEGRFTCSECASGI K P G S R R 2 1 0 0 4 0 1 4 1 0 6 0 0 1 2 2 0 0 0 0 0 0 24 0 2644.2382 O96028;H0Y9U6 O96028 676 699 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 0.052817 9.4587 1 1.3922 1.1573 NaN 1 Median NaN NaN NaN 0 0 Median 1.3922 1.1573 NaN 1 0 Median 7569000 3302400 4266600 0 0 0 7569000 3302400 4266600 10487 1435 10775 27786 43494 43494 1 PGSNQGRPDGSLGGTAPLIFPDSK GKEPPGAMTSTTSQKPGSNQGRPDGSLGGT GSLGGTAPLIFPDSKNVPPVGILAPEANPK K P G S K N 1 1 1 2 0 1 0 5 0 1 2 1 0 1 4 3 1 0 0 0 0 0 24 1 2367.1819 W5ZR30;Q9UGU0 W5ZR30 1472 1495 TCF20 Transcription factor 20 yes no 3 3.9791E-05 56.303 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7859100 7859100 0 7859100 7859100 0 0 0 0 10488 2100 10776 27787;27788 43495;43496 43496 2 PGSVPLVSEK EARRRKEVNRIKHSKPGSVPLVSEKKKHVV IKHSKPGSVPLVSEKKKHVVAVVK______ K P G E K K 0 0 0 0 0 0 1 1 0 0 1 1 0 0 2 2 0 0 0 2 0 0 10 0 1011.5601 A0A087WT20;Q9NV06 A0A087WT20 579 588 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 1.5827E-09 131.22 2 3 1.141 1.2867 4.0809 3 Median 1.0995 1.2465 4.4827 2 0 Median 1.6315 1.3033 NaN 1 0 Median 275550000 144960000 130590000 263430000 138510000 124920000 12118000 6446500 5671800 10489 402 10777 27789;27790;27791;27792;27793 43497;43498;43499;43500;43501;43502;43503;43504 43499 8 PGTDVIPAAPR QEGESVKAGQEPSPKPGTDVIPAAPRKPRE PSPKPGTDVIPAAPRKPREFSKLVLLTASD K P G P R K 2 1 0 1 0 0 0 1 0 1 0 0 0 0 3 0 1 0 0 1 0 0 11 0 1092.5928 Q4VC44;I3L0R3;I3L231 Q4VC44 24 34 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 4.0538E-07 106.68 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7455400 7455400 0 7455400 7455400 0 0 0 0 10490 1781 10778 27794;27795;27796;27797 43505;43506;43507;43508 43505 4 PGTTGSGAGSGGPGGLTSAAPAGGDK AAPPAAPALSAADTKPGTTGSGAGSGGPGG GPGGLTSAAPAGGDKKVIATKVLGTVKWFN K P G D K K 4 0 0 1 0 0 0 10 0 0 1 1 0 0 3 3 3 0 0 0 0 0 26 0 2083.977 P67809;Q6PKI6;C9J5V9;Q15905 P67809 27 52 YBX1;YB-1 Nuclease-sensitive element-binding protein 1 yes no 2 1.3233E-45 141.13 2 2.464 2.5128 NaN 1 Median 2.464 2.5128 NaN 1 0 Median NaN NaN NaN 0 0 Median 19968000 2686700 17282000 19968000 2686700 17282000 0 0 0 10491 1657 10779 27798;27799 43509;43510;43511 43509 3 PGTVALR SAPSTGGVKKPHRYRPGTVALREIRRYQKS VKKPHRYRPGTVALREIRRYQKSTELLIRK R P G L R E 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 7 0 712.42317 K7EK07;B2R4P9;P84243;B4E380;Q16695;B2R6Y1;K7EMV3;B4DEB1;A8K4Y7;K7ES00;Q6NXT2;K7EP01;Q6TXQ4;P68431;Q5TEC6;Q71DI3 K7EK07 44 50 H3F3B;H3F3A;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 0.010096 119.22 2 0.96272 1.1106 4.369 2 Median 0.96272 1.1106 4.369 2 0 Median NaN NaN NaN 0 0 Median 322350000 163560000 158800000 322350000 163560000 158800000 0 0 0 10492 827;1661;1865;1828 10780 27800;27801 43512;43513;43514 43512 3 PGVLLGFNMK SNKRKKCVRDCEKYKPGVLLGFNMKELNKV CEKYKPGVLLGFNMKELNKVKHEMDFDAEW K P G M K E 0 0 1 0 0 0 0 2 0 0 2 1 1 1 1 0 0 0 0 1 0 0 10 0 1074.5896 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 820 829 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00056549 75.109 1 1.0303 1.0419 NaN 1 Median 1.0303 1.0419 NaN 1 0 Median NaN NaN NaN 0 0 Median 8859900 4925900 3934000 8859900 4925900 3934000 0 0 0 10493 878 10781 27802 43515 43515 689 1 PGVYAVSVTGR EDSWVSKWQRVSNFKPGVYAVSVTGRLPQG SNFKPGVYAVSVTGRLPQGIVRELKSRGVA K P G G R L 1 1 0 0 0 0 0 2 0 0 0 0 0 0 1 1 1 0 1 3 0 0 11 0 1104.5928 D3DTZ5;J3QSB9;P63272 D3DTZ5 41 51 SUPT4H1 Transcription elongation factor SPT4 yes no 2 0.0058682 64.04 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10494 1191 10782 27803;27804 43516;43517 43516 2 PGVYVR QGVTSWGLGCARPNKPGVYVRVSPYVPWIE GLGCARPNKPGVYVRVSPYVPWIEETMRRN K P G V R V 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 2 0 0 6 0 689.38606 CON__P06868;A0A0F7G8J1;B2R7F8;P00747;B4DPH4;Q68DS2 CON__P06868 792 797 PLG;DKFZp779M0222 Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B no no 2 0.052279 67.29 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2765300 2765300 0 2765300 2765300 0 0 0 0 + 10495 1157 10783 27805 43518 43518 1 PHFNQLFK SLGTYASLHGRIYCKPHFNQLFKSKGNYDE HGRIYCKPHFNQLFKSKGNYDEGFGHRPHK K P H F K S 0 0 1 0 0 1 0 0 1 0 1 1 0 2 1 0 0 0 0 0 0 0 8 0 1029.5396 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 279 286 LIMA1 LIM domain and actin-binding protein 1 yes no 3 0.036566 24.923 1 2.268 2.351 NaN 1 Median 2.268 2.351 NaN 1 0 Median NaN NaN NaN 0 0 Median 18760000 3928200 14832000 18760000 3928200 14832000 0 0 0 10496 1010 10784 27806 43519 43519 1 PHLGHVPDYLVPPALR QLLRHDLPLHPAVVKPHLGHVPDYLVPPAL HLGHVPDYLVPPALRGLVRPHKKRKKLSSS K P H L R G 1 1 0 1 0 0 0 1 2 0 3 0 0 0 4 0 0 0 1 2 0 0 16 0 1779.9784 Q9NY93;Q53HB9;H7BZN7 Q9NY93 487 502 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 0.026806 20.439 1 1.2901 1.0786 NaN 1 Median NaN NaN NaN 0 0 Median 1.2901 1.0786 NaN 1 0 Median 3547900 1602300 1945600 0 0 0 3547900 1602300 1945600 10497 2081 10785 27807 43520;43521 43521 2 PHSVSLNDTETR AVPLNASKQDGPMPKPHSVSLNDTETRKLM MPKPHSVSLNDTETRKLMEECKRLQGEMMK K P H T R K 0 1 1 1 0 0 1 0 1 0 1 0 0 0 1 2 2 0 0 1 0 0 12 0 1354.6477 A8KA83;Q9P0L0 A8KA83 155 166 VAPA Vesicle-associated membrane protein-associated protein A yes no 2;3 0.00022519 83.869 2 1 0.79566 0.84668 17.644 3 Median 0.73654 0.77644 12.247 2 0 Median 1.17 1.0133 NaN 1 0 Median 36527000 16925000 19602000 34911000 16282000 18629000 1616500 643100 973420 10498 791 10786 27808;27809;27810 43522;43523;43524;43525;43526;43527 43522 6 PHSVSLNDTETRK AVPLNASKQDGPMPKPHSVSLNDTETRKLM PKPHSVSLNDTETRKLMEECKRLQGEMMKL K P H R K L 0 1 1 1 0 0 1 0 1 0 1 1 0 0 1 2 2 0 0 1 0 0 13 1 1482.7427 A8KA83;Q9P0L0 A8KA83 155 167 VAPA Vesicle-associated membrane protein-associated protein A yes no 3 0.02222 35.891 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7306800 7306800 0 7306800 7306800 0 0 0 0 10499 791 10787 27811 43528 43528 1 PIEIQWVKPEPK HDPTADVFVTPAEEKPIEIQWVKPEPKVDL EEKPIEIQWVKPEPKVDLKARKKRIYKRQR K P I P K V 0 0 0 0 0 1 2 0 0 2 0 2 0 0 3 0 0 1 0 1 0 0 12 1 1462.8184 Q8TDN6;A0JLQ5 Q8TDN6 315 326 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3 0.002177 66.267 2 1 0.73323 0.86533 21.741 3 Median 0.72405 0.84821 2.827 2 0 Median 1.4598 1.2341 NaN 1 0 Median 269760000 143440000 126320000 257790000 138400000 119380000 11970000 5033700 6935900 10500 1934 10788 27812;27813;27814 43529;43530;43531;43532;43533;43534 43532 6 PIELTPLPLLK QKRSQSSSQFRSQGKPIELTPLPLLKDVPS SQGKPIELTPLPLLKDVPSSEQPELFLKKL K P I L K D 0 0 0 0 0 0 1 0 0 1 4 1 0 0 3 0 1 0 0 0 0 0 11 0 1232.7744 Q86XZ2;Q58EX4;B7Z5X1;Q562F2;Q59EK0;Q16537 Q86XZ2 42 52 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform yes no 2 0.0038503 66.435 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10501 1098 10789 27815 43535 43535 1 PIEVQVGGR FPRAMEALARRILSKPIEVQVGGRSVVCSD RRILSKPIEVQVGGRSVVCSDVEQQVIVIE K P I G R S 0 1 0 0 0 1 1 2 0 1 0 0 0 0 1 0 0 0 0 2 0 0 9 0 953.52943 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 578 586 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0015079 84.498 1 1 0.76825 0.77045 69.778 2 Median 1.0939 1.2619 NaN 1 0 Median 0.53957 0.47039 NaN 1 0 Median 73060000 34143000 38917000 71581000 33373000 38208000 1478200 769860 708370 10502 511 10790 27816;27817 43536;43537 43536 2 PIFGGTVYHSPVSR NTTTMSNATANSSIRPIFGGTVYHSPVSRL RPIFGGTVYHSPVSRLPPSGSKPVAASTCS R P I S R L 0 1 0 0 0 0 0 2 1 1 0 0 0 1 2 2 1 0 1 2 0 0 14 0 1515.7834 A0A024RC67;O43663;G3V3N7;H0YNE4 A0A024RC67 504 517 PRC1 Protein regulator of cytokinesis 1 yes no 3 0.0026314 38.511 2 0.66484 0.67538 13.24 2 Median 0.66484 0.67538 13.24 2 0 Median NaN NaN NaN 0 0 Median 25844000 16497000 9346600 25844000 16497000 9346600 0 0 0 10503 353 10791 27818;27819 43538;43539 43539 2 PIFTDESYLELYR VWQRSRDICLKKFIKPIFTDESYLELYRKQ IKPIFTDESYLELYRKQKKHLNTQQLTAFQ K P I Y R K 0 1 0 1 0 0 2 0 0 1 2 0 0 1 1 1 1 0 2 0 0 0 13 0 1644.8035 Q01780;B4DKG8;B4DFE4 Q01780 484 496 EXOSC10 Exosome component 10 yes no 2 0.00013561 88.596 2 2 1.0756 0.90829 3.0348 2 Median NaN NaN NaN 0 0 Median 1.0756 0.90829 3.0348 2 0 Median 22497000 12831000 9665900 12155000 7674000 4481200 10341000 5156600 5184700 10504 1676 10792 27820;27821;27822;27823 43540;43541;43542;43543;43544;43545 43545 6 PIFTLNAHNDEISGLDLSSQIK TDDGFVYNLDARSDKPIFTLNAHNDEISGL HNDEISGLDLSSQIKGCLVTASADKYVKIW K P I I K G 1 0 2 2 0 1 1 1 1 3 3 1 0 1 1 3 1 0 0 0 0 0 22 0 2411.2333 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 377 398 PWP1 Periodic tryptophan protein 1 homolog yes no 3 2.5505E-08 62.847 2 1.0068 1.0615 5.0916 2 Median 1.0068 1.0615 5.0916 2 0 Median NaN NaN NaN 0 0 Median 66850000 31948000 34903000 66850000 31948000 34903000 0 0 0 10505 339 10793 27824;27825 43546;43547 43547 1 PIKPSPPYFGLLLASVGR PFFVGVQYHPEFLSRPIKPSPPYFGLLLAS PSPPYFGLLLASVGRLSHYLQKGCRLSPRD R P I G R L 1 1 0 0 0 0 0 2 0 1 3 1 0 1 4 2 0 0 1 1 0 0 18 1 1911.0982 P17812;B4E1E0 P17812 533 550 CTPS1 CTP synthase 1;CTP synthase yes no 3 0.00042478 39.203 1 2 1.3515 1.1554 54.384 3 Median 2.4216 2.664 NaN 1 0 Median 1.2503 1.053 13.122 2 0 Median 12364000 4305800 8058400 5781000 2054300 3726700 6583200 2251400 4331800 10506 1494 10794 27826;27827;27828 43548;43549;43550 43548 3 PILDPVDFLGLQDK TIKELREMIQLPGARPILDPVDFLGLQDKI RPILDPVDFLGLQDKIKEVPRPRKRLTELL R P I D K I 0 0 0 3 0 1 0 1 0 1 3 1 0 1 2 0 0 0 0 1 0 0 14 0 1568.845 B3KSQ6;A0A0A0MTN9;A0A0A0MTR6;B4DDI9;Q6GSK2;A0A0C4DFN8;A0A0C4DGN7;A0A0A0MSZ4;A0A0A0MT64;P22570 B3KSQ6 208 221 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2 0.00022698 65.5 1 1.1061 1.22 NaN 1 Median 1.1061 1.22 NaN 1 0 Median NaN NaN NaN 0 0 Median 2865100 1491800 1373300 2865100 1491800 1373300 0 0 0 10507 484 10795 27829 43551 43551 1 PILQVINIRPITTGNSPPR GAIAAIMQKGDTNIKPILQVINIRPITTGN VINIRPITTGNSPPRYRLLMSDGLNTLSSF K P I P R Y 0 2 2 0 0 1 0 1 0 4 1 0 0 0 4 1 2 0 0 1 0 0 19 1 2085.2059 P27694;I3L524;I3L2M5 P27694 23 41 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 3 1.4527E-05 55.437 2 2 0.35128 0.29792 53.041 3 Median 0.59712 0.6807 NaN 1 0 Median 0.31179 0.27461 11.526 2 0 Median 58982000 35507000 23475000 40840000 22132000 18708000 18142000 13375000 4766900 10508 1525 10796 27830;27831;27832;27833 43552;43553;43554;43555;43556 43553 5 PINFSVILK QQVDFNRKPGRMSSKPINFSVILKLSNVNL GRMSSKPINFSVILKLSNVNLQEKAYRDGL K P I L K L 0 0 1 0 0 0 0 0 0 2 1 1 0 1 1 1 0 0 0 1 0 0 9 0 1029.6223 Q9Y3T9;B3KNC3;Q9H9J5;B4DY21 Q9Y3T9 499 507 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.0063471 64.42 1 2 1.0799 1.1706 22.166 3 Plateau 1.0799 1.1708 NaN 1 0 Median 0.98889 0.79787 1.42 2 0 Median 57560000 28137000 29423000 44676000 21416000 23260000 12884000 6721800 6162200 10509 2139 10797 27834;27835;27836 43557;43558;43559;43560;43561 43557 5 PINGAIFIFNPR RVTIHKTFEGNLTTKPINGAIFIFNPRTGQ TTKPINGAIFIFNPRTGQLFLKIIHTSVWA K P I P R T 1 1 2 0 0 0 0 1 0 3 0 0 0 2 2 0 0 0 0 0 0 0 12 0 1357.7507 Q6P2Q9;B4DK16;Q6JH02 Q6P2Q9 1802 1813 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 2.6765E-05 100.25 2 2 0.85389 0.86769 19.093 4 Linear 0.83765 0.84485 9.6802 2 0 Median 0.71769 0.6159 0.99289 2 0 Median 32243000 17163000 15080000 26382000 14279000 12103000 5860800 2884200 2976600 10510 1854 10798 27837;27838;27839;27840 43562;43563;43564;43565;43566;43567 43564 6 PIPILAAGFCSDK IQIATPGKGKKSTPKPIPILAAGFCSDKMS PKPIPILAAGFCSDKMSLLLVYGSWFQPTI K P I D K M 2 0 0 1 1 0 0 1 0 2 1 1 0 1 2 1 0 0 0 0 0 0 13 0 1387.717 Q15061;C9IZK7 Q15061 332 344 WDR43 WD repeat-containing protein 43 yes no 2 8.0557E-06 102.52 2 2 1.1573 1.0168 5.8293 3 Median 0.94292 1.0375 NaN 1 0 Median 1.2314 0.9724 6.3204 2 0 Median 84138000 37096000 47042000 53635000 23428000 30207000 30503000 13668000 16835000 10511 1752 10799 27841;27842;27843;27844 43568;43569;43570;43571;43572;43573;43574;43575 43571 8 PIPQTPESAGNK EDSLVSHFYTNPIAKPIPQTPESAGNKHSN IAKPIPQTPESAGNKHSNSNSVDDTIVALN K P I N K H 1 0 1 0 0 1 1 1 0 1 0 1 0 0 3 1 1 0 0 0 0 0 12 0 1237.6303 P52948;A0A024RCC4;Q86TI1;B4DWF8;A8KA17 P52948 666 677 NUP98;NUP98/HOXC13 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.012218 45.158 2 1.2495 1.3213 NaN 1 Median 1.2495 1.3213 NaN 1 0 Median NaN NaN NaN 0 0 Median 24637000 13592000 11045000 24637000 13592000 11045000 0 0 0 10512 1603 10800 27845;27846 43576;43577 43577 2 PIQLTDPGK GGEVVFSCPVRKVLKPIQLTDPGKIKRIRG VRKVLKPIQLTDPGKIKRIRGMAYSVRVSP K P I G K I 0 0 0 1 0 1 0 1 0 1 1 1 0 0 2 0 1 0 0 0 0 0 9 0 967.53385 Q9Y2P8;Q5VZU3 Q9Y2P8 179 187 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 6.7382E-06 130.75 2 3 1.1352 1.1797 9.8758 3 Median 1.0853 1.1749 0.57127 2 0 Median 1.6789 1.3939 NaN 1 0 Median 114160000 53774000 60389000 110790000 52888000 57899000 3376400 885870 2490600 10513 2125 10801 27847;27848;27849;27850;27851 43578;43579;43580;43581;43582;43583;43584 43579 7 PISIPTNLVSLFSR ATRELLRIPQAALAKPISIPTNLVSLFSRY KPISIPTNLVSLFSRYVDRQKLNLLETKLQ K P I S R Y 0 1 1 0 0 0 0 0 0 2 2 0 0 1 2 3 1 0 0 1 0 0 14 0 1542.877 B3KXN0;Q86TB9 B3KXN0 241 254 PATL1 Protein PAT1 homolog 1 yes no 2 0.00078272 58.37 1 1.0459 1.0525 NaN 1 Median 1.0459 1.0525 NaN 1 0 Median NaN NaN NaN 0 0 Median 6567100 2887800 3679300 6567100 2887800 3679300 0 0 0 10514 953 10802 27852 43585 43585 1 PISSFADFER EDCRGNILIPGLSQKPISSFADFERHFLPA GLSQKPISSFADFERHFLPASRNRTVGATR K P I E R H 1 1 0 1 0 0 1 0 0 1 0 0 0 2 1 2 0 0 0 0 0 0 10 0 1167.556 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 214 223 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.0012794 74.376 1 2 1.4425 1.202 22.199 3 Median 0.78127 0.85467 NaN 1 0 Median 1.4766 1.2483 5.3539 2 0 Median 49537000 24840000 24697000 34207000 18825000 15382000 15330000 6014600 9315700 10515 1745 10803 27853;27854;27855 43586;43587;43588;43589;43590 43586 5 PISTLDNR CMDIQLVEALCGFQKPISTLDNRTIVITSH ALCGFQKPISTLDNRTIVITSHPGQIVKHG K P I N R T 0 1 1 1 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 8 0 914.48214 P31689;B7Z5C0;Q9NXZ8 P31689 276 283 DNAJA1;HDJ2 DnaJ homolog subfamily A member 1 yes no 2 0.0048039 92.47 2 2 0.79764 0.78653 46.235 4 Median 1.1043 1.2296 15.817 2 0 Median 0.64645 0.56082 0.46403 2 0 Median 108250000 55156000 53095000 100380000 50548000 49828000 7875500 4608000 3267600 10516 1535 10804 27856;27857;27858;27859 43591;43592;43593;43594 43591 4 PIVLELIPLK YGQCSEICGAIHSFKPIVLELIPLKIFEMG IHSFKPIVLELIPLKIFEMGPVFTL_____ K P I L K I 0 0 0 0 0 0 1 0 0 2 3 1 0 0 2 0 0 0 0 1 0 0 10 0 1133.7424 A0A0E3JSF1;A0A0E3JG40 A0A0E3JSF1 208 217 yes no 2 0.00069073 79.906 3 0.91779 1.0129 NaN 1 Median 0.91779 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median 3575600 2318900 1256700 3575600 2318900 1256700 0 0 0 10517 530 10805 27860;27861;27862 43595;43596;43597;43598 43596 4 PIVYGNVAR GPDSGGRVKGVTIVKPIVYGNVARYFGKKR GVTIVKPIVYGNVARYFGKKREEDGHTHQW K P I A R Y 1 1 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 2 0 0 9 0 987.55016 O95619;F8W0J4;F8W1B9 O95619 24 32 YEATS4 YEATS domain-containing protein 4 yes no 2 0.052654 45.718 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10518 1430 10806 27863;27864 43599;43600 43599 2 PKPENQDESELLTVPDGWK RPEKGAGKSEFRNQKPKPENQDESELLTVP NQDESELLTVPDGWKEPAFSKEDNPRGLLE K P K W K E 0 0 1 2 0 1 3 1 0 0 2 2 0 0 3 1 1 1 0 1 0 0 19 1 2181.059 Q13601;B4DMS5 Q13601 23 41 KRR1 KRR1 small subunit processome component homolog yes no 3 0.051904 29.126 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14619000 0 14619000 14619000 0 14619000 0 0 0 10519 1717 10807 27865 43601 43601 1 PLDGEWGTNPR SVPLTDGECRSLIYKPLDGEWGTNPRDEEC LIYKPLDGEWGTNPRDEECERIVAGINQLM K P L P R D 0 1 1 1 0 0 1 2 0 0 1 0 0 0 2 0 1 1 0 0 0 0 11 0 1240.5836 Q8WWQ0;Q9NWP3 Q8WWQ0 1151 1161 PHIP PH-interacting protein yes no 2 4.1815E-05 99.653 2 2 0.9986 0.97244 28.488 4 Median 0.72007 0.75331 3.7593 2 0 Median 1.4315 1.232 1.1043 2 0 Median 60789000 35636000 25154000 55083000 33320000 21763000 5706600 2315800 3390800 10520 1942 10808 27866;27867;27868;27869 43602;43603;43604;43605;43606;43607;43608 43602 7 PLDGEWGTNPRDEECER SVPLTDGECRSLIYKPLDGEWGTNPRDEEC DGEWGTNPRDEECERIVAGINQLMTLDIAS K P L E R I 0 2 1 2 1 0 4 2 0 0 1 0 0 0 2 0 1 1 0 0 0 0 17 1 2058.8701 Q8WWQ0;Q9NWP3 Q8WWQ0 1151 1167 PHIP PH-interacting protein yes no 3 0.039843 13.832 1 1.3765 1.2378 NaN 1 Median NaN NaN NaN 0 0 Median 1.3765 1.2378 NaN 1 0 Median 2548100 993930 1554100 0 0 0 2548100 993930 1554100 10521 1942 10809 27870 43609 43609 1 PLDSAMSAEEDTDVR ERAGQDMGLEHGFEKPLDSAMSAEEDTDVR PLDSAMSAEEDTDVRGRRKKKTPRKAEDTR K P L V R G 2 1 0 3 0 0 2 0 0 0 1 0 1 0 1 2 1 0 0 1 0 0 15 0 1634.7094 Q99549;B3KS10;A0A0A0MT47 Q99549 313 327 MPHOSPH8 M-phase phosphoprotein 8 yes no 2 0.00055932 57.802 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10522 1994 10810 27871 43610 43610 1823 1 PLEPVSTVQVEPAVK ETATLAQKPSQDTEKPLEPVSTVQVEPAVK PLEPVSTVQVEPAVKTVNQQTMAAPVVKEE K P L V K T 1 0 0 0 0 1 2 0 0 0 1 1 0 0 3 1 1 0 0 4 0 0 15 0 1591.8821 E7EPN9;Q9Y520;B4DM27 E7EPN9 1108 1122 PRRC2C Protein PRRC2C yes no 2 0.0013825 57.175 1 1 2.0509 1.7172 NaN 1 Median NaN NaN NaN 0 0 Median 2.0509 1.7172 NaN 1 0 Median 1517400 588200 929190 0 0 0 1517400 588200 929190 10523 1219 10811 27872;27873 43611;43612;43613 43611 3 PLEVNAIK SIEETNKLRAKLGLKPLEVNAIKKEAGTKE RAKLGLKPLEVNAIKKEAGTKEEPVTADVI K P L I K K 1 0 1 0 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 8 0 882.51747 O43290;E9PQI8 O43290 134 141 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 0.027641 60.709 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7637500 7637500 0 7637500 7637500 0 0 0 0 10524 1384 10812 27874 43614 43614 1 PLFESSICGDSAADVSQSEENGQKPENK PEIKLKITKTYMNGKPLFESSICGDSAADV DVSQSEENGQKPENKARRNRKRSIKYDSLL K P L N K A 2 0 2 2 1 2 4 2 0 1 1 2 0 1 2 5 0 0 0 1 0 0 28 1 3022.3462 O96028;Q05CW4;D6R9V2;D6RIS1 O96028 137 164 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 0.00026177 33.649 1 2.1156 1.8338 NaN 1 Median NaN NaN NaN 0 0 Median 2.1156 1.8338 NaN 1 0 Median 3551600 1105900 2445700 0 0 0 3551600 1105900 2445700 10525 1435 10813 27875 43615 43615 1 PLFGPGYTGIR IGEWELIQESGVPLKPLFGPGYTGIRNLGN VPLKPLFGPGYTGIRNLGNSCYLNSVVQVL K P L I R N 0 1 0 0 0 0 0 3 0 1 1 0 0 1 2 0 1 0 1 0 0 0 11 0 1176.6291 A0A140VJZ1;P45974 A0A140VJZ1 319 329 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.001528 82.645 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12872000 0 12872000 12872000 0 12872000 0 0 0 10526 613 10814 27876 43616 43616 1 PLFHGDSEIDQLFR IWSIGTIFAELATKKPLFHGDSEIDQLFRI KPLFHGDSEIDQLFRIFRALGTPNNEVWPE K P L F R I 0 1 0 2 0 1 1 1 1 1 2 0 0 2 1 1 0 0 0 0 0 0 14 0 1672.8209 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;A0A024QZJ8 A0A024QZP7 202 215 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 3 0.010033 25.122 1 1.2804 1.3211 NaN 1 Median 1.2804 1.3211 NaN 1 0 Median NaN NaN NaN 0 0 Median 6211100 2015000 4196000 6211100 2015000 4196000 0 0 0 10527 25 10815 27877 43617;43618 43618 2 PLFINK GHGLREQLELFQNIRPLFINKPLIVVANKC QLELFQNIRPLFINKPLIVVANKCDVKRIA R P L N K P 0 0 1 0 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 6 0 730.43776 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 275 280 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.025304 130.51 1 1.1036 1.1236 NaN 1 Median 1.1036 1.1236 NaN 1 0 Median NaN NaN NaN 0 0 Median 16957000 7404500 9552900 16957000 7404500 9552900 0 0 0 10528 1183 10816 27878 43619 43619 1 PLFPHVLCHNCAVEFNFGQK LGVAFKISKEVLAGRPLFPHVLCHNCAVEF VLCHNCAVEFNFGQKEKPYFPIPEEYTFIQ R P L Q K E 1 0 2 0 2 1 1 1 2 0 2 1 0 3 2 0 0 0 0 2 0 0 20 0 2413.146 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5;Q5RI18 B4DLR3 402 421 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 3 0.023528 18.296 1 0.83255 0.66011 NaN 1 Median NaN NaN NaN 0 0 Median 0.83255 0.66011 NaN 1 0 Median 4668000 2775400 1892500 0 0 0 4668000 2775400 1892500 10529 999 10817 27879 43620 43620 1 PLFQFFVPDALNDR ALNKLSQYLDSSQVKPLFQFFVPDALNDRH KPLFQFFVPDALNDRHPDVRKCMLDAALAT K P L D R H 1 1 1 2 0 1 0 0 0 0 2 0 0 3 2 0 0 0 0 1 0 0 14 0 1677.8515 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1255 1268 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 3.2513E-06 103.08 1 1.5457 1.6197 NaN 1 Median 1.5457 1.6197 NaN 1 0 Median NaN NaN NaN 0 0 Median 4438500 2046700 2391800 4438500 2046700 2391800 0 0 0 10530 1205 10818 27880 43621;43622 43621 2 PLFSSASPQDSSPR DQDMSSPTTMKKPEKPLFSSASPQDSSPRL KPLFSSASPQDSSPRLSTFPQHHHPGIPGV K P L P R L 1 1 0 1 0 1 0 0 0 0 1 0 0 1 3 5 0 0 0 0 0 0 14 0 1474.7052 A0A1B0GW37;U3KQE8;Q5VW28;A0A1B0GWJ4;A0A0A0MRX8;A0A1B0GU97;A0A1B0GWI9;Q5VW27;Q5VW30;Q5VW26;O00712;B4DS74;A0A1B0GVN4;A0A1B0GWB8;Q5VW31 A0A1B0GW37 313 326 NFIB Nuclear factor 1;Nuclear factor 1 B-type yes no 2 0.015381 48.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3110500 3110500 0 3110500 3110500 0 0 0 0 10531 473 10819 27881 43623 43623 1 PLFSSGQFSMK RNTVSWEQSLFSTTKPLFSSGQFSMKNHDT STTKPLFSSGQFSMKNHDTAISSHTVKSVL K P L M K N 0 0 0 0 0 1 0 1 0 0 1 1 1 2 1 3 0 0 0 0 0 0 11 0 1227.5958 Q8NG31;E9PPJ1 Q8NG31 727 737 CASC5 Protein CASC5 yes no 2 0.0034095 53.327 2 1.1348 1.1728 NaN 1 Median 1.1348 1.1728 NaN 1 0 Median NaN NaN NaN 0 0 Median 11053000 6044600 5008900 11053000 6044600 5008900 0 0 0 10532 1928 10820 27882;27883 43624;43625 43624 1765 2 PLGSEDIDNQGLMMPK AKMASSRVTLFSDSKPLGSEDIDNQGLMMP LGSEDIDNQGLMMPKEEKQMDLNTGRMRRK K P L P K E 0 0 1 2 0 1 1 2 0 1 2 1 2 0 2 1 0 0 0 0 0 0 16 0 1743.8172 Q14692 Q14692 400 415 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.00013577 78.342 2 1.8058 1.8234 NaN 1 Median 1.8058 1.8234 NaN 1 0 Median NaN NaN NaN 0 0 Median 8265300 3500600 4764700 8265300 3500600 4764700 0 0 0 10533 1742 10821 27884;27885 43626;43627 43627 1592;1593 2 PLGSWSVK DSGRTVILYKVSDQKPLGSWSVKQGQIITC YKVSDQKPLGSWSVKQGQIITCPAVCNFQT K P L V K Q 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 2 0 1 0 1 0 0 8 0 872.4756 Q9H8H0;J3QLQ6 Q9H8H0 53 60 NOL11 Nucleolar protein 11 yes no 2 0.039022 47.749 1 0.68987 0.71751 NaN 1 Median 0.68987 0.71751 NaN 1 0 Median NaN NaN NaN 0 0 Median 12414000 6496900 5917000 12414000 6496900 5917000 0 0 0 10534 2042 10822 27886 43628 43628 1 PLISVYSEK ______________________________ ______________________________ R P L E K G 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 2 0 0 1 1 0 0 9 0 1034.5648 P36578;Q59GY2;B4DMJ6;B4DFI6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 6 14 RPL4 60S ribosomal protein L4 yes no 2 2.1383E-05 117.04 2 2 0.98266 0.99029 12.072 4 Median 0.92465 1.0919 0.049978 2 0 Median 1.0554 0.88663 1.8717 2 0 Median 1083500000 551670000 531830000 980060000 502100000 477960000 103440000 49572000 53869000 10535 1548 10823 27887;27888;27889;27890 43629;43630;43631;43632;43633;43634;43635;43636;43637;43638;43639;43640;43641;43642;43643 43629 15 PLIVVANK QLELFQNIRPLFINKPLIVVANKCDVKRIA RPLFINKPLIVVANKCDVKRIAELSEDDQK K P L N K C 1 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 2 0 0 8 0 852.54329 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 281 288 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 6.5411E-05 137.44 2 2 1.3489 1.4788 11.548 4 Linear 1.2534 1.4592 3.3808 2 0 Median 1.5019 1.2062 5.1144 2 0 Median 508590000 231840000 276760000 496850000 227180000 269670000 11746000 4657800 7088500 10536 1183 10824 27891;27892;27893;27894 43644;43645;43646;43647;43648;43649 43644 6 PLLASCGLDR GLAGSVRGLQCHPSKPLLASCGLDRVLRIH CHPSKPLLASCGLDRVLRIHRIQNPRGLEH K P L D R V 1 1 0 1 1 0 0 1 0 0 3 0 0 0 1 1 0 0 0 0 0 0 10 0 1100.5648 Q6RFH5;E9PS41 Q6RFH5 282 291 WDR74 WD repeat-containing protein 74 yes no 2 0.00051176 85.676 2 2 1.0403 0.9986 15.469 4 Median 0.80659 0.85816 10.766 2 0 Median 1.285 1.0955 2.4236 2 0 Median 64979000 36792000 28187000 56970000 33414000 23556000 8008600 3377700 4630900 10537 1859 10825 27895;27896;27897;27898 43650;43651;43652;43653;43654;43655;43656 43652 7 PLLDEIVPVYR ENIGCEEKAKKNANKPLLDEIVPVYRRDCH NANKPLLDEIVPVYRRDCHEEVYAGSHQYP K P L Y R R 0 1 0 1 0 0 1 0 0 1 2 0 0 0 2 0 0 0 1 2 0 0 11 0 1312.7391 A0A024R3P9;Q9H3P7 A0A024R3P9 474 484 ACBD3 Golgi resident protein GCP60 yes no 2 0.0013489 83.948 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4269600 0 4269600 4269600 0 4269600 0 0 0 10538 136 10826 27899 43657 43657 1 PLLFMDLLDER RRRTAHAFKISKIYKPLLFMDLLDERTLVA KIYKPLLFMDLLDERTLVAVERPLDDIIAQ K P L E R T 0 1 0 2 0 0 1 0 0 0 4 0 1 1 1 0 0 0 0 0 0 0 11 0 1360.7061 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4 Q969X6 649 659 CIRH1A Cirhin yes no 2 8.3781E-06 105.98 4 1 1.3839 1.3831 43.432 3 Median 1.4251 1.4194 3.6608 2 0 Median 0.80611 0.66985 NaN 1 0 Median 40685000 19868000 20817000 34723000 16628000 18095000 5961900 3239800 2722100 10539 1955 10827;10828 27900;27901;27902;27903;27904 43658;43659;43660;43661;43662;43663;43664;43665;43666 43659 1806 9 PLLGGPFSLTTHTGER KAEKLEKERQRHIGKPLLGGPFSLTTHTGE LLGGPFSLTTHTGERKTDKDYLDSITTLPD K P L E R K 0 1 0 0 0 0 1 3 1 0 3 0 0 1 2 1 3 0 0 0 0 0 16 0 1681.8788 J3QL56;O75880;B3KQB1 J3QL56 134 149 SCO1 Protein SCO1 homolog, mitochondrial yes no 3 4.6261E-07 95.347 2 1.05 1.0839 NaN 1 Median 1.05 1.0839 NaN 1 0 Median NaN NaN NaN 0 0 Median 32350000 9794000 22556000 32350000 9794000 22556000 0 0 0 10540 1334 10829 27905;27906 43667;43668;43669 43669 3 PLLLQLPIGEAK FKYAVESIREKLKAKPLLLQLPIGEAKTFK KAKPLLLQLPIGEAKTFKGVVDVVMKEKLL K P L A K T 1 0 0 0 0 1 1 1 0 1 4 1 0 0 2 0 0 0 0 0 0 0 12 0 1290.7911 A0A024RAJ7;A0A024RAK1;Q969S9;D6RAL1 A0A024RAJ7 219 230 GFM2 Ribosome-releasing factor 2, mitochondrial yes no 2 0.0014978 77.379 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5516200 0 5516200 5516200 0 5516200 0 0 0 10541 307 10830 27907;27908 43670;43671;43672 43670 3 PLLQEELGR KVWKGLFYCMWMQDKPLLQEELGRTISQLV MWMQDKPLLQEELGRTISQLVHAFQTTEAQ K P L G R T 0 1 0 0 0 1 2 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1053.5819 Q6PJJ2;P56182;B4DZM3;Q53FR7 Q6PJJ2 74 82 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 6.9342E-08 143.01 2 1 0.99429 1.1157 6.3654 3 Plateau 0.98593 1.1112 2.9136 2 0 Median 1.164 1.0012 NaN 1 0 Median 181210000 94918000 86291000 174320000 91667000 82654000 6887300 3250300 3637000 10542 1618 10831 27909;27910;27911 43673;43674;43675;43676;43677;43678 43674 6 PLLQVSR KLRNWQWWRLFTKVKPLLQVSRQEEEMMAK WRLFTKVKPLLQVSRQEEEMMAKEEELVKV K P L S R Q 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 7 0 811.49159 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 836 842 MYH9 Myosin-9 yes no 2 0.027156 73.975 1 1.5836 1.7634 NaN 1 Median 1.5836 1.7634 NaN 1 0 Median NaN NaN NaN 0 0 Median 80252000 31640000 48612000 80252000 31640000 48612000 0 0 0 10543 81 10832 27912 43679 43679 1 PLLSFDPAFDELPHYALLK LAELKMTGNCLKGSRPLLSFDPAFDELPHY FDPAFDELPHYALLKELLIQIFSTPRYHPK R P L L K E 2 0 0 2 0 0 1 0 1 0 5 1 0 2 3 1 0 0 1 0 0 0 19 0 2185.1459 Q8TDN6;A0JLQ5 Q8TDN6 164 182 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3 4.82E-17 113.28 3 1 0.96235 1.0661 11.733 3 Median 0.9545 1.0417 3.2737 2 0 Median 1.5656 1.2714 NaN 1 0 Median 112970000 48356000 64609000 85413000 37885000 47527000 27553000 10471000 17082000 10544 1934 10833 27913;27914;27915;27916 43680;43681;43682;43683;43684;43685;43686;43687 43683 8 PLLSNEVIWLDSK FNSLQGQLHPTPDLKPLLSNEVIWLDSKQI LKPLLSNEVIWLDSKQIRQEEMKKLSLLNG K P L S K Q 0 0 1 1 0 0 1 0 0 1 3 1 0 0 1 2 0 1 0 1 0 0 13 0 1512.8188 O95235;D6RBN1 O95235 203 215 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 1.8961E-06 110.31 2 2 0.90241 0.8144 23.78 4 Median 0.64035 0.6522 7.3335 2 0 Median 1.2109 0.97776 1.7763 2 0 Median 39327000 22100000 17227000 25621000 15703000 9918600 13706000 6397600 7308100 10545 1421 10834 27917;27918;27919;27920 43688;43689;43690;43691;43692;43693;43694 43690 7 PLMLIAPK TAMIGHTNVVVPRSKPLMLIAPKPQDKKSM VVVPRSKPLMLIAPKPQDKKSMGLPPRIGS K P L P K P 1 0 0 0 0 0 0 0 0 1 2 1 1 0 2 0 0 0 0 0 0 0 8 0 881.54085 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 267 274 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.0015806 96.048 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10546 878 10835 27921;27922 43695;43696 43696 690 2 PLNVFR SEAEDKIREDCCPGKPLNVFRIEPGVSVSL IREDCCPGKPLNVFRIEPGVSVSLVNPQPS K P L F R I 0 1 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 6 0 744.42826 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 1011 1016 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.037647 123.53 1 1.5721 1.695 NaN 1 Median 1.5721 1.695 NaN 1 0 Median NaN NaN NaN 0 0 Median 26119000 9412200 16707000 26119000 9412200 16707000 0 0 0 10547 883 10836 27923 43697 43697 1 PLNYQILLK IAQFSVAMADDSLWKPLNYQILLKTRDSSP DDSLWKPLNYQILLKTRDSSPKVRFAALIT K P L L K T 0 0 1 0 0 1 0 0 0 1 3 1 0 0 1 0 0 0 1 0 0 0 9 0 1100.6594 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 2064 2072 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.9329E-12 161.68 3 2 1.0185 0.9643 4.0186 4 Median 0.88923 1.0013 3.1285 2 0 Median 1.1768 0.94191 1.1247 2 0 Median 207960000 106830000 101130000 182530000 94780000 87752000 25429000 12048000 13381000 10548 897 10837 27924;27925;27926;27927;27928 43698;43699;43700;43701;43702;43703;43704;43705;43706;43707 43707 10 PLPEPSEQEGESVK ______________________________ MPLPEPSEQEGESVKAGQEPSPKPGTDVIP M P L V K A 0 0 0 0 0 1 4 1 0 0 1 1 0 0 3 2 0 0 0 1 0 0 14 0 1524.7308 Q4VC44;I3L0R3;I3L231;I3L4I0;I3L1Y9;Q96CP2 Q4VC44 2 15 FLYWCH1;FLYWCH2 FLYWCH-type zinc finger-containing protein 1;FLYWCH family member 2 no no 2 0.0054113 47.288 2 1.1785 1.1829 NaN 1 Median 1.1785 1.1829 NaN 1 0 Median NaN NaN NaN 0 0 Median 34390000 6760300 27630000 34390000 6760300 27630000 0 0 0 10549 1781;1320 10838 27929;27930 43708;43709 43708 2 PLPEYHVR RNELEIPGQYDGRGKPLPEYHVRIAGFDER QYDGRGKPLPEYHVRIAGFDERVTVMASLR K P L V R I 0 1 0 0 0 0 1 0 1 0 1 0 0 0 2 0 0 0 1 1 0 0 8 0 1009.5345 P78527 P78527 3711 3718 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.012647 46.994 1 0.70927 0.717 NaN 1 Median 0.70927 0.717 NaN 1 0 Median NaN NaN NaN 0 0 Median 19871000 11693000 8177900 19871000 11693000 8177900 0 0 0 10550 1665 10839 27931 43710 43710 1 PLPFGTLGVHK ILDSEVLLIDNKTGKPLPFGTLGVHKKAAF KTGKPLPFGTLGVHKKAAFQDANVCLFVFD K P L H K K 0 0 0 0 0 0 0 2 1 0 2 1 0 1 2 0 1 0 0 1 0 0 11 0 1164.6655 P49916;B7Z6I3 P49916 571 581 LIG3 DNA ligase 3;DNA ligase yes no 3 0.02383 39.918 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6403800 6403800 0 6403800 6403800 0 0 0 0 10551 1589 10840 27932 43711 43711 1 PLPGEEPLFTIPHTQEAFR ______________________________ EEPLFTIPHTQEAFRTREEYEARLERYSER K P L F R T 1 1 0 0 0 1 3 1 1 1 2 0 0 2 4 0 2 0 0 0 0 0 19 0 2178.111 Q9UIG0 Q9UIG0 15 33 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.0001795 45.608 1 2 20.375 17.774 NaN 1 Median NaN NaN NaN 0 0 Median 20.375 17.774 NaN 1 0 Median 203130000 1997800 201130000 103350000 0 103350000 99779000 1997800 97781000 10552 2103 10841 27933;27934;27935 43712;43713;43714 43714 3 PLPLHFLR MEMKILRALNFGLGRPLPLHFLRRASKIGE LNFGLGRPLPLHFLRRASKIGEVDVEQHTL R P L L R R 0 1 0 0 0 0 0 0 1 0 3 0 0 1 2 0 0 0 0 0 0 0 8 0 991.59672 P14635;E9PC90;H1UBN2;H0YA62;Q9BWU8;Q9BWV0;Q9BWU9;Q9BPX9;Q9BWU7;Q7Z4Z4;H0YMP3;H1UBN3;Q5U0M0;Q53HG9;O95067 P14635 300 307 CCNB1;CCNB1V;CCNB2;CCNB2V G2/mitotic-specific cyclin-B1;G2/mitotic-specific cyclin-B2 no no 3 0.006086 58.917 2 0.68901 0.68589 NaN 1 Median 0.68901 0.68589 NaN 1 0 Median NaN NaN NaN 0 0 Median 9776700 3595800 6180800 9776700 3595800 6180800 0 0 0 10553 1483;1297 10842 27936;27937 43715;43716;43717 43716 3 PLPPAAIESPAVAAPAYSR WSQWLGGSSWPGYVRPLPPAAIESPAVAAP AAIESPAVAAPAYSRALSRQLSSGVSEIRH R P L S R A 6 1 0 0 0 0 1 0 0 1 1 0 0 0 5 2 0 0 1 1 0 0 19 0 1877.0047 V9HW43;P04792;B4DL87;F8WE04 V9HW43 57 75 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 1.7648E-05 64.224 2 1 1.3957 1.4584 11.914 3 Plateau 1.3556 1.4584 12.193 2 0 Median 1.4293 1.2648 NaN 1 0 Median 81283000 36285000 44998000 78863000 35277000 43586000 2419800 1007700 1412100 10554 1443 10843 27938;27939;27940 43718;43719;43720;43721 43719 4 PLQYQSTVASGTVAR YRQKERRNSRGKIIKPLQYQSTVASGTVAR PLQYQSTVASGTVARVEPNIKWFGNTRVIK K P L A R V 2 1 0 0 0 2 0 1 0 0 1 0 0 0 1 2 2 0 1 2 0 0 15 0 1576.8209 Q5T0F3;Q13823 Q5T0F3 59 73 GNL2 Nucleolar GTP-binding protein 2 yes no 2 4.5682E-11 124.12 2 2 1.0869 1.0203 5.1395 4 Median 0.93369 0.97775 6.294 2 0 Median 1.2697 1.0362 2.4404 2 0 Median 81867000 39622000 42244000 54472000 27800000 26672000 27394000 11822000 15572000 10555 1721 10844 27941;27942;27943;27944 43722;43723;43724;43725;43726;43727;43728;43729 43724 8 PLRLPLQDVYK EALDCILPPTRPTDKPLRLPLQDVYKIGGI PTDKPLRLPLQDVYKIGGIGTVPVGRVETG K P L Y K I 0 1 0 1 0 1 0 0 0 0 3 1 0 0 2 0 0 0 1 1 0 0 11 1 1340.7816 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q9NZS6;Q6P4C9;B4E2C5;A0A087WV01;Q9H2I7;Q96C29;Q8TBL1;Q6P082;Q96CD8;A9X7H1;Q05639;Q59GP5;Q53HR1 Q6IPT9 245 255 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 3 0.0019834 58.274 2 1 2.6692 3.2249 43.822 3 Plateau 2.6778 3.198 1.1864 2 0 Median 1.7656 1.4973 NaN 1 0 Median 321330000 94663000 226670000 303240000 88338000 214900000 18092000 6324700 11768000 10556 1658;1790 10845 27945;27946;27947 43730;43731;43732;43733;43734;43735 43731 6 PLSAVPK HLSTSSVFRLVSRPKPLSAVPKQVVTGTVL FRLVSRPKPLSAVPKQVVTGTVLTRSVFIN K P L P K Q 1 0 0 0 0 0 0 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 7 0 710.43268 Q8WYP5;B3KVE5 Q8WYP5 1035 1041 AHCTF1 Protein ELYS yes no 2 0.018704 95.793 1 1.3312 1.4028 NaN 1 Median 1.3312 1.4028 NaN 1 0 Median NaN NaN NaN 0 0 Median 35246000 16322000 18924000 35246000 16322000 18924000 0 0 0 10557 1945 10846 27948 43736 43736 1 PLSENELLELFEK DCSAAPLEMMENFPKPLSENELLELFEKMM PKPLSENELLELFEKMMEDMNLNEDKKAPL K P L E K M 0 0 1 0 0 0 4 0 0 0 4 1 0 1 1 1 0 0 0 0 0 0 13 0 1559.8083 B7ZB09;B4DPV3;Q9NSV4 B7ZB09 116 128 DIAPH3 Protein diaphanous homolog 3 yes no 2 0.0019329 72.652 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1453500 0 1453500 1453500 0 1453500 0 0 0 10558 1022 10847 27949 43737 43737 1 PLSGNSNSSGSESFK FAYKDQNENRWQNRKPLSGNSNSSGSESFK PLSGNSNSSGSESFKFVEQQSYKRKSEQEF K P L F K F 0 0 2 0 0 0 1 2 0 0 1 1 0 1 1 6 0 0 0 0 0 0 15 0 1496.6743 B2RA91;F8VXG7;Q99590 B2RA91 787 801 SCAF11 Protein SCAF11 yes no 2 0.00021228 75.695 2 1.1653 1.1679 4.4886 2 Median 1.1653 1.1679 4.4886 2 0 Median NaN NaN NaN 0 0 Median 12452000 5006500 7445300 12452000 5006500 7445300 0 0 0 10559 871 10848 27950;27951 43738;43739;43740;43741 43740 4 PLSHQPGPEAPALPK FRAVLGEVVLYSGARPLSHQPGPEAPALPK PLSHQPGPEAPALPKTAAQLKKEAKKREKL R P L P K T 2 0 0 0 0 1 1 1 1 0 2 1 0 0 5 1 0 0 0 0 0 0 15 0 1537.8253 A0A024RCN6;P26640;A0A140T936;A0A140T954 A0A024RCN6 215 229 VARS Valine--tRNA ligase yes no 3 0.0018391 36.638 2 0.99308 0.99165 8.4747 2 Median 0.99308 0.99165 8.4747 2 0 Median NaN NaN NaN 0 0 Median 53785000 24323000 29462000 53785000 24323000 29462000 0 0 0 10560 363 10849 27952;27953 43742;43743 43743 2 PLSIEEIEVAPPK EVIKCKAAVAWEAGKPLSIEEIEVAPPKAH GKPLSIEEIEVAPPKAHEVRIKIIATAVCH K P L P K A 1 0 0 0 0 0 3 0 0 2 1 1 0 0 3 1 0 0 0 1 0 0 13 0 1420.7813 Q6IRT1;Q6FI45;P11766;H0YAG8;Q5U043;D6RAY0;D6R9G2;D6RFE4;Q2VIM7 Q6IRT1 19 31 ADH5 S-(hydroxymethyl)glutathione dehydrogenase;Alcohol dehydrogenase class-3 yes no 2 0.005013 60.518 1 3.0056 2.9652 NaN 1 Median 3.0056 2.9652 NaN 1 0 Median NaN NaN NaN 0 0 Median 24948000 3783700 21164000 24948000 3783700 21164000 0 0 0 10561 1472 10850 27954 43744 43744 0 PLSIGGIIILK KVLTMPETCRYQPFKPLSIGGIIILKDTSE QPFKPLSIGGIIILKDTSEDIEELVEPVAA K P L L K D 0 0 0 0 0 0 0 2 0 4 2 1 0 0 1 1 0 0 0 0 0 0 11 0 1122.7376 B2R6D0;A0A087WW66;Q99460 B2R6D0 905 915 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.0019317 79.474 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1615500 0 1615500 1615500 0 1615500 0 0 0 10562 424 10851 27955;27956;27957 43745;43746;43747 43746 3 PLSSLTPLIMAAK SAKELLQHPFLKLAKPLSSLTPLIMAAKEA AKPLSSLTPLIMAAKEAMKSNR________ K P L A K E 2 0 0 0 0 0 0 0 0 1 3 1 1 0 2 2 1 0 0 0 0 0 13 0 1340.7738 A8K5M4;Q9Y6B5;Q13177;H7C1X3 A8K5M4 505 517 PAK2 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes no 2 2.3315E-05 96.89 1 4.3462 4.4378 NaN 1 Median 4.3462 4.4378 NaN 1 0 Median NaN NaN NaN 0 0 Median 14282000 2570500 11711000 14282000 2570500 11711000 0 0 0 10563 750 10852 27958 43748 43748 582 1 PLSSSSVLQEPPAK RKAVEMHAAVIAAVKPLSSSSVLQEPPAKK KPLSSSSVLQEPPAKKAAVAVVPLVSEDKS K P L A K K 1 0 0 0 0 1 1 0 0 0 2 1 0 0 3 4 0 0 0 1 0 0 14 0 1438.7668 B4DLG2;O75152;B4DYM8;A0A1B0GTU1;A0A024R8H9;A0A1B0GUI2 B4DLG2 631 644 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 4.7137E-06 95.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7626600 0 7626600 7626600 0 7626600 0 0 0 10564 996 10853 27959 43749 43749 1 PLSSVQENIQQK ERFCALEEKCENIQKPLSSVQENIQQKSKD IQKPLSSVQENIQQKSKDIVNKMTFHSQKF K P L Q K S 0 0 1 0 0 3 1 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 12 0 1369.7201 P52732;B2RAM6;Q59GZ5 P52732 746 757 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 1.4535E-73 217.14 1 2.1197 2.1436 NaN 1 Median 2.1197 2.1436 NaN 1 0 Median NaN NaN NaN 0 0 Median 26698000 7940000 18758000 26698000 7940000 18758000 0 0 0 10565 1602 10854 27960 43750;43751 43750 2 PLTSFGSAPSSEGAK PISPPQPPSVSAWNKPLTSFGSAPSSEGAK PLTSFGSAPSSEGAKNGQESGLEIGTDTIQ K P L A K N 2 0 0 0 0 0 1 2 0 0 1 1 0 1 2 4 1 0 0 0 0 0 15 0 1434.6991 E7EPN9;Q9Y520;H7C5N8 E7EPN9 2028 2042 PRRC2C Protein PRRC2C yes no 2 0.021135 43.544 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10566 1219 10855 27961 43752 43752 1 PLTSNCTIQIATPGK QVHLFEHILNGYCKKPLTSNCTIQIATPGK PLTSNCTIQIATPGKGKKSTPKPIPILAAG K P L G K G 1 0 1 0 1 1 0 1 0 2 1 1 0 0 2 1 3 0 0 0 0 0 15 0 1599.829 Q15061;C9IZK7 Q15061 310 324 WDR43 WD repeat-containing protein 43 yes no 2 0.00145 71.806 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10567 1752 10856 27962;27963 43753;43754 43753 2 PLTVLNK RFSIAPSSLDPSNRKPLTVLNKGLENPLPE SLDPSNRKPLTVLNKGLENPLPERPREKEE K P L N K G 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 7 0 783.48544 P53350;B2R841;B4E083;Q59GD0;D3DWF3;I3L2H5 P53350 339 345 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 0.00095346 137.83 2 1.1572 1.1623 12.37 2 Median 1.1572 1.1623 12.37 2 0 Median NaN NaN NaN 0 0 Median 56685000 24873000 31813000 56685000 24873000 31813000 0 0 0 10568 1604 10857 27964;27965 43755;43756 43756 2 PLVETIFER DDSAPNEMVYRFTARPLVETIFERGMATCF YRFTARPLVETIFERGMATCFAYGQTGSGK R P L E R G 0 1 0 0 0 0 2 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 9 0 1102.6023 B0AZS5;O00139;B4DM85 B0AZS5 250 258 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 0.0011834 88.819 2 2 0.78059 0.76805 7.1875 4 Median 0.68279 0.73573 8.156 2 0 Median 0.90192 0.79026 6.1097 2 0 Median 76843000 43157000 33686000 72860000 41388000 31472000 3982900 1768500 2214400 10569 804 10858 27966;27967;27968;27969 43757;43758;43759;43760;43761;43762 43759 6 PLVLCGPPGSGK VRHEALLYTWLAEHKPLVLCGPPGSGKTMT EHKPLVLCGPPGSGKTMTLFSALRALPDME K P L G K T 0 0 0 0 1 0 0 3 0 0 2 1 0 0 3 1 0 0 0 1 0 0 12 0 1180.6274 Q14204 Q14204 2590 2601 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.017146 52.278 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2833700 0 2833700 2833700 0 2833700 0 0 0 10570 1729 10859 27970 43763 43763 1 PLVQTIFEGGK DETASNEVVYRFTARPLVQTIFEGGKATCF FTARPLVQTIFEGGKATCFAYGQTGSGKTH R P L G K A 0 0 0 0 0 1 1 2 0 1 1 1 0 1 1 0 1 0 0 1 0 0 11 0 1187.655 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1;Q5JR91 A8K3S3 331 341 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 3.7938E-10 132.01 2 0.89459 0.89971 2.7639 2 Median 0.89459 0.89971 2.7639 2 0 Median NaN NaN NaN 0 0 Median 55665000 28373000 27292000 55665000 28373000 27292000 0 0 0 10571 626 10860 27971;27972 43764;43765;43766;43767 43766 4 PLVVFVLGGPGAGK QTRRPILLCSPRLMKPLVVFVLGGPGAGKG KPLVVFVLGGPGAGKGTQCARIVEKYGYTH K P L G K G 1 0 0 0 0 0 0 4 0 0 2 1 0 1 2 0 0 0 0 3 0 0 14 0 1309.7758 Q5T0D2;B4DDL4;B2R6S5;P30085;B4DFW6;E9PJD2 Q5T0D2 35 48 CMPK1;CMPK UMP-CMP kinase yes no 2 1.7079E-15 128.36 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6622100 0 6622100 6622100 0 6622100 0 0 0 10572 844 10861 27973;27974 43768;43769 43768 2 PLYIQK SVGSDLFVFKPSEPRPLYIQKGISREKVQW FVFKPSEPRPLYIQKGISREKVQWGVFVPR R P L Q K G 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 0 6 0 760.44833 A8K330;Q8IWA0 A8K330 617 622 WDR75 WD repeat-containing protein 75 yes no 2 0.046127 75.94 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10573 716 10862 27975 43770 43770 1 PLYLQYLER ELGARDDGGCTELAKPLYLQYLERALRLDH CTELAKPLYLQYLERALRLDHFLRQTSAIF K P L E R A 0 1 0 0 0 1 1 0 0 0 3 0 0 0 1 0 0 0 2 0 0 0 9 0 1193.6445 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 19 27 INOC1;INO80 DNA helicase INO80 yes no 2 0.0074668 61.962 1 0.81034 0.81145 NaN 1 Median 0.81034 0.81145 NaN 1 0 Median NaN NaN NaN 0 0 Median 17137000 9594200 7543300 17137000 9594200 7543300 0 0 0 10574 288 10863 27976 43771;43772 43771 2 PLYVALAQR TKAVTEMNGRIVATKPLYVALAQRKEERQA RIVATKPLYVALAQRKEERQAHLTNQYMQR K P L Q R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1029.5971 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;H0YAR2;Q5VX58;Q3ZCS4;Q9H361;Q2VIP3;Q4VXU2;H0YB86;B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;Q53GL4;H0YEU6;Q147Y3;Q3B867;Q59GZ7 A0A087WTT1 337 345 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 no no 2 0.0001739 114.72 2 1 1.96 2.2249 37.188 3 Plateau 1.9473 2.1989 8.4521 2 0 Median 1.386 1.1644 NaN 1 0 Median 159990000 52683000 107300000 155150000 50927000 104230000 4833200 1756300 3076900 10575 273;818 10864 27977;27978;27979 43773;43774;43775;43776 43775 4 PMCIPPSYADLGK ______________________________ ARPMCIPPSYADLGKAARDIFNKGFGFGLV R P M G K A 1 0 0 1 1 0 0 1 0 1 1 1 1 0 3 1 0 0 1 0 0 0 13 0 1447.684 A0A0A0MR02;A0A024QZT0;P45880;Q5JSD2;Q5JSD1 A0A0A0MR02 11 23 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 7.3158E-05 84.687 5 2.6913 2.7079 1.8546 2 Median 2.6913 2.7079 1.8546 2 0 Median NaN NaN NaN 0 0 Median 41887000 10199000 31688000 41887000 10199000 31688000 0 0 0 10576 28 10865 27980;27981;27982;27983;27984 43777;43778;43779;43780;43781;43782 43781 16 6 PMCVESFSDYPPLGR LKSGDAAIVDMVPGKPMCVESFSDYPPLGR PMCVESFSDYPPLGRFAVRDMRQTVAVGVI K P M G R F 0 1 0 1 1 0 1 1 0 0 1 0 1 1 3 2 0 0 1 1 0 0 15 0 1753.7804 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q9NZS6;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q14222;Q2F837;Q96EB3;Q53HR1 Q6IPT9 409 423 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 no no 2 1.0318E-10 119.76 5 4 1.725 1.5561 40.63 8 Median 2.1811 2.3626 36.22 4 0 Median 1.4678 1.2761 19.566 4 0 Median 180940000 50154000 130780000 157290000 40842000 116440000 23653000 9311300 14342000 10577 1658;1790 10866;10867 27985;27986;27987;27988;27989;27990;27991;27992;27993 43783;43784;43785;43786;43787;43788;43789;43790;43791;43792;43793;43794;43795;43796;43797 43783 1439 15 PMEAASAILSQADAR SALALRSPASIEVVKPMEAASAILSQADAR PMEAASAILSQADARQVVLKYTVPGYRNSL K P M A R Q 5 1 0 1 0 1 1 0 0 1 1 0 1 0 1 2 0 0 0 0 0 0 15 0 1529.7508 A0A024R2Z6;Q9BVP2 A0A024R2Z6 321 335 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.00026361 79.82 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10578 125 10868 27994;27995;27996 43798;43799;43800 43798 111 3 PMEGNFEEIAR LVGDLMRSVLLLAYKPMEGNFEEIARDFNP LAYKPMEGNFEEIARDFNPNWMSAVEILDD K P M A R D 1 1 1 0 0 0 3 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 11 0 1291.5867 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 937 947 DDB1 DNA damage-binding protein 1 yes no 2 8.3781E-06 105.98 2 0.81618 0.80781 NaN 1 Median 0.81618 0.80781 NaN 1 0 Median NaN NaN NaN 0 0 Median 23344000 15911000 7432500 23344000 15911000 7432500 0 0 0 10579 1770 10869 27997;27998 43801;43802 43802 1640 2 PMNIQLVTSQIDAQR LKAMKQYNGVPLDGRPMNIQLVTSQIDAQR PMNIQLVTSQIDAQRRPAQSVNRGGMTRNR R P M Q R R 1 1 1 1 0 3 0 0 0 2 1 0 1 0 1 1 1 0 0 1 0 0 15 0 1712.888 E9PB61;Q86V81 E9PB61 182 196 ALYREF THO complex subunit 4 yes no 2 0.023716 29.805 1 0.82689 0.72036 NaN 1 Median NaN NaN NaN 0 0 Median 0.82689 0.72036 NaN 1 0 Median 1805300 916720 888620 0 0 0 1805300 916720 888620 10580 1229 10870 27999 43803 43803 1 PNAQELPSMYQR KDLQMVNISLRVLSRPNAQELPSMYQRLGL LSRPNAQELPSMYQRLGLDYEERVLPSIVN R P N Q R L 1 1 1 0 0 2 1 0 0 0 1 0 1 0 2 1 0 0 1 0 0 0 12 0 1432.6769 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 112 123 PHB2 Prohibitin-2 yes no 2 1.6137E-05 93.561 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5383800 0 5383800 5383800 0 5383800 0 0 0 10581 1328 10871 28000;28001 43804;43805 43805 1005 2 PNASVALHK YYVRILSTIDRELLKPNASVALHKHSNALV DRELLKPNASVALHKHSNALVDVLPPEADS K P N H K H 2 0 1 0 0 0 0 0 1 0 1 1 0 0 1 1 0 0 0 1 0 0 9 0 935.51886 A8K2M0;P43686 A8K2M0 126 134 PSMC4 26S protease regulatory subunit 6B yes no 3 0.03042 30.797 1 3.3915 3.4076 NaN 1 Median 3.3915 3.4076 NaN 1 0 Median NaN NaN NaN 0 0 Median 7008200 1984000 5024200 7008200 1984000 5024200 0 0 0 10582 710 10872 28002 43806 43806 1 PNLADLAVYGVLR VAAVGKDRPFMGGQKPNLADLAVYGVLRVM QKPNLADLAVYGVLRVMEGLDAFDDLMQHT K P N L R V 2 1 1 1 0 0 0 1 0 0 3 0 0 0 1 0 0 0 1 2 0 0 13 0 1399.7823 Q9H7Z7;B4DWP1;A6NHH0;B3KPZ2 Q9H7Z7 330 342 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes no 2 3.3356E-09 113.93 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7092100 0 7092100 7092100 0 7092100 0 0 0 10583 2041 10873 28003;28004 43807;43808 43808 2 PNLGAIAEYK TNQIALLEARCHEMKPNLGAIAEYKKKEEL CHEMKPNLGAIAEYKKKEELYLQRVAELDK K P N Y K K 2 0 1 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 1 0 0 0 10 0 1074.571 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1088 1097 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.0287E-05 98.048 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10584 2070 10874 28005 43809 43809 1 PNLLYQK IRSLSKETTRYNHPKPNLLYQKFVKMATLT TTRYNHPKPNLLYQKFVKMATLTSGGEKPN K P N Q K F 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 7 0 874.49125 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 102 108 GPATCH4 G patch domain-containing protein 4 yes no 2 0.014567 99.919 2 2 1.4927 1.4155 18.067 4 Median 1.1119 1.222 3.8001 2 0 Median 2.0532 1.6591 5.4727 2 0 Median 128500000 57282000 71217000 111520000 51926000 59599000 16974000 5356300 11618000 10585 1820 10875 28006;28007;28008;28009 43810;43811;43812;43813 43810 4 PNLNLQVLSNPEFLAEGTAIK RAAESIRRIFDANTKPNLNLQVLSNPEFLA VLSNPEFLAEGTAIKDLKNPDRVLIGGDET K P N I K D 2 0 3 0 0 1 2 1 0 1 4 1 0 1 2 1 1 0 0 1 0 0 21 0 2267.2161 O60701;Q9NQ81 O60701 150 170 UGDH;GDH UDP-glucose 6-dehydrogenase yes no 2 2.1947E-06 64.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4472700 0 4472700 4472700 0 4472700 0 0 0 10586 1397 10876 28010 43814 43814 1 PNPNQIISVGSK ADSKLKQVYIPTYTKPNPNQIISVGSKPGM YTKPNPNQIISVGSKPGMNGAGFQKGLTCE K P N S K P 0 0 2 0 0 1 0 1 0 2 0 1 0 0 2 2 0 0 0 1 0 0 12 0 1252.6776 A0A024R534;O94776 A0A024R534 342 353 MTA2 Metastasis-associated protein MTA2 yes no 2 0.00021365 81.525 2 0.77995 0.819 24.987 2 Median 0.77995 0.819 24.987 2 0 Median NaN NaN NaN 0 0 Median 66743000 34825000 31918000 66743000 34825000 31918000 0 0 0 10587 168 10877 28011;28012 43815;43816;43817;43818;43819;43820 43820 6 PNPNQISVNNVK AESKLKQVYIPNYNKPNPNQISVNNVKAGV YNKPNPNQISVNNVKAGVVNGTGAPGQSPG K P N V K A 0 0 4 0 0 1 0 0 0 1 0 1 0 0 2 1 0 0 0 2 0 0 12 0 1322.6943 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7 E7ESY4 362 373 MTA1 Metastasis-associated protein MTA1 yes no 2 0.015684 42.718 1 0.93008 0.93157 NaN 1 Median 0.93008 0.93157 NaN 1 0 Median NaN NaN NaN 0 0 Median 9822100 4614000 5208100 9822100 4614000 5208100 0 0 0 10588 1223 10878 28013 43821 43821 1 PNTLTLVHVR RLYFSTCPFRQPLARPNTLTLVHVRLPPGF QPLARPNTLTLVHVRLPPGFSASSTVEKPS R P N V R L 0 1 1 0 0 0 0 0 1 0 2 0 0 0 1 0 2 0 0 2 0 0 10 0 1148.6666 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 344 353 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.01284 31.843 1 1.3431 1.3453 NaN 1 Median 1.3431 1.3453 NaN 1 0 Median NaN NaN NaN 0 0 Median 18639000 5495800 13143000 18639000 5495800 13143000 0 0 0 10589 39 10879 28014 43822 43822 1 PQEQLTLEPYER VFASEVKKMQQENMKPQEQLTLEPYERDHA NMKPQEQLTLEPYERDHAVVVGVYRPPPKV K P Q E R D 0 1 0 0 0 2 3 0 0 0 2 0 0 0 2 0 1 0 1 0 0 0 12 0 1501.7413 Q96BS4;P22087;M0QXL5;M0R299;A6NHQ2 Q96BS4 232 243 FBL;FBLL1 rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 no no 2 1.1856E-37 179.19 2 2 0.75318 0.74179 5.5885 4 Median 0.63232 0.71852 1.6612 2 0 Median 0.90801 0.78146 4.5212 2 0 Median 316900000 186550000 130340000 253180000 154980000 98202000 63713000 31571000 32142000 10590 1506;683 10880 28015;28016;28017;28018 43823;43824;43825;43826;43827;43828;43829;43830;43831;43832 43825 10 PQFYEIK KRQERLKEDQQTVLKPQFYEIKAGEEFRSF EDQQTVLKPQFYEIKAGEEFRSFKDSATKQ K P Q I K A 0 0 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 0 1 0 0 0 7 0 923.47527 Q9BSC4;B4DS83 Q9BSC4 590 596 NOL10 Nucleolar protein 10 yes no 2 0.013988 101.28 2 1 0.85661 0.90348 14.788 3 Median 0.85422 0.88106 3.5533 2 0 Median 1.3911 1.134 NaN 1 0 Median 65462000 34196000 31265000 62803000 33094000 29710000 2658600 1102900 1555700 10591 2000 10881 28019;28020;28021 43833;43834;43835 43834 3 PQGIPVAALLEPDEVLK KQFLELLNCLMSPVKPQGIPVAALLEPDEV GIPVAALLEPDEVLKEFVLPFLRLDVEEVD K P Q L K E 2 0 0 1 0 1 2 1 0 1 3 1 0 0 3 0 0 0 0 2 0 0 17 0 1788.0033 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678 Q9HBB9 626 642 GEMIN4 Gem-associated protein 4 yes no 2 0.014092 41.54 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2860300 0 2860300 2860300 0 2860300 0 0 0 10592 1940 10882 28022 43836 43836 1 PQGLDPVEILQER LQLQQKQSRISPIQKPQGLDPVEILQEREY QKPQGLDPVEILQEREYRLQARIAHRIQEL K P Q E R E 0 1 0 1 0 2 2 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 13 0 1492.7886 P51531;A0A0U1RQZ9;F6VDE0;A0A0U1RRJ8 P51531 334 346 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.0010478 59.418 1 1 1.4745 1.3754 23.742 2 Median 1.1758 1.1629 NaN 1 0 Median 1.849 1.6269 NaN 1 0 Median 14129000 6993900 7134700 12480000 6318800 6161600 1648200 675120 973100 10593 1595 10883 28023;28024 43837;43838 43838 2 PQLGMIDR KGQVRLSKKMVDPEKPQLGMIDRWYHPGCF KMVDPEKPQLGMIDRWYHPGCFVKNREELG K P Q D R W 0 1 0 1 0 1 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 0 8 0 928.48004 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0 A0A024R3T8 149 156 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.025886 40.778 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12601000 12601000 0 12601000 12601000 0 0 0 0 10594 139 10884 28025 43839 43839 127 1 PQLQGIPVLVLGNK KIEASRNELHNLLDKPQLQGIPVLVLGNKR KPQLQGIPVLVLGNKRDLPNALDEKQLIEK K P Q N K R 0 0 1 0 0 2 0 2 0 1 3 1 0 0 2 0 0 0 0 2 0 0 14 0 1474.8871 B4DQT8;A0A024R2D4;B4E1J8;Q9NVJ2;B2R7U5;A0A024R977;Q96BM9 B4DQT8 109 122 ARL8B;ARL8A ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A yes no 2 3.5348E-22 142.43 2 2.226 2.2241 NaN 1 Median 2.226 2.2241 NaN 1 0 Median NaN NaN NaN 0 0 Median 23304000 5142400 18161000 23304000 5142400 18161000 0 0 0 10595 109 10885 28026;28027 43840;43841;43842 43840 3 PQNEYIELHR ______________________________ ______________________________ M P Q H R K 0 1 1 0 0 1 2 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 10 0 1297.6415 Q5J7U2;O95478;A0A0A0MQZ6 Q5J7U2 2 11 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2;3 7.6015E-06 89.08 3 0.902 0.99982 3.8329 2 Median 0.902 0.99982 3.8329 2 0 Median NaN NaN NaN 0 0 Median 108900000 54971000 53929000 108900000 54971000 53929000 0 0 0 10596 1427 10886 28028;28029;28030 43843;43844;43845;43846;43847 43847 5 PQNLLIDDK IVFCHSRRVLHRDLKPQNLLIDDKGTIKLA LHRDLKPQNLLIDDKGTIKLADFGLARAFG K P Q D K G 0 0 1 2 0 1 0 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 9 0 1054.5659 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6 A0A024QZP7 131 139 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 0.0002392 105.1 2 2 1.1083 1.0172 9.3251 3 Median 0.99412 1.1126 NaN 1 0 Median 1.167 0.96914 6.8429 2 0 Median 161210000 55750000 105460000 157320000 54064000 103250000 3890500 1686300 2204200 10597 25 10887 28031;28032;28033;28034 43848;43849;43850;43851;43852 43849 5 PQPVNTSSVTVK AATKKLSATIPKATKPQPVNTSSVTVKSNR ATKPQPVNTSSVTVKSNRSSNMTATTKFVS K P Q V K S 0 0 1 0 0 1 0 0 0 0 0 1 0 0 2 2 2 0 0 3 0 0 12 0 1255.6772 B2RMQ4;Q8WWK9 B2RMQ4 217 228 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.030341 45.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10598 895 10888 28035 43853 43853 1 PQQAAGMLSPK TLAAKDDPDGKQEAKPQQAAGMLSPKTGGK QEAKPQQAAGMLSPKTGGKEAASGTTPQKS K P Q P K T 2 0 0 0 0 2 0 1 0 0 1 1 1 0 2 1 0 0 0 0 0 0 11 0 1126.5805 E7ETY2;B4DRA2;Q13428 Q13428 1249 1259 TCOF1 Treacle protein no no 2 0.0010156 62.463 2 1 0.52885 0.534 8.3805 2 Median 0.52885 0.534 8.3805 2 0 Median NaN NaN NaN 0 0 Median 17563000 11431000 6132000 16806000 10674000 6132000 756210 756210 0 10599 1712;1225 10889;10890 28036;28037;28038 43854;43855;43856 43855 936 3 PQQIQALMDEVTK TSPKPAVVETVTTAKPQQIQALMDEVTKQG AKPQQIQALMDEVTKQGNIVRELKAQKADK K P Q T K Q 1 0 0 1 0 3 1 0 0 1 1 1 1 0 1 0 1 0 0 1 0 0 13 0 1499.7654 A8K492;P56192;H0YIP0;H0YI94 A8K492 839 851 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.00037512 77.062 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8364100 0 8364100 8364100 0 8364100 0 0 0 10600 732 10891 28039 43857 43857 569 1 PQSSSTEPARK PEAELEREAKKSAKKPQSSSTEPARKPGQK SAKKPQSSSTEPARKPGQKEKRVRPEEKQQ K P Q R K P 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 3 1 0 0 0 0 0 11 1 1186.5942 Q7Z4V5;Q59H67;A0A087WT54 Q7Z4V5 416 426 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 2 0.027986 45.68 1 0.43036 0.49259 NaN 1 Median 0.43036 0.49259 NaN 1 0 Median NaN NaN NaN 0 0 Median 26047000 16772000 9275000 26047000 16772000 9275000 0 0 0 10601 1877 10892 28040 43858 43858 1 PQTGNSIPLTATNFR NIIKQVAITGQLGVKPQTGNSIPLTATNFR PQTGNSIPLTATNFRIQGKDVLRLPPSSIT K P Q F R I 1 1 2 0 0 1 0 1 0 1 1 0 0 1 2 1 3 0 0 0 0 0 15 0 1615.8318 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 932 946 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.016076 58.674 1 1 1.6963 1.5002 NaN 1 Median NaN NaN NaN 0 0 Median 1.6963 1.5002 NaN 1 0 Median 5792100 4846700 945380 4433300 4433300 0 1358800 413410 945380 10602 135 10893 28041;28042 43859;43860 43859 2 PQYQTWEEFSR ______________________________ ______________________________ M P Q S R A 0 1 0 0 0 2 2 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 11 0 1469.6575 P49458;Q6P2S0;Q659G3;E9PE20;A0A024R3P3 P49458 2 12 SRP9;DKFZp564M2223 Signal recognition particle 9 kDa protein yes no 2 0.013015 55.314 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5882100 723220 5158900 5158900 0 5158900 723220 723220 0 10603 1582 10894 28043;28044;28045 43861;43862;43863 43863 3 PRPLNTWK HELRPGRALVVEMSRPRPLNTWKIFVGNVS LVVEMSRPRPLNTWKIFVGNVSAACTSQEL R P R W K I 0 1 1 0 0 0 0 0 0 0 1 1 0 0 2 0 1 1 0 0 0 0 8 1 1010.5661 A0A0S2Z4Z0;Q96PK6;A0A0S2Z567;A0A0A6YYI9;A0A0S2Z5V2;F8WDX3;A0A0A0MSL8;B8ZZ74 A0A0S2Z4Z0 73 80 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 3 0.018134 47.657 1 1.1948 1.3642 NaN 1 Median 1.1948 1.3642 NaN 1 0 Median NaN NaN NaN 0 0 Median 20928000 10741000 10187000 20928000 10741000 10187000 0 0 0 10604 571 10895 28046 43864 43864 1 PRPPPGPWDVPSPGLPVSAPILVR RAGSCRQRGARCSTKPRPPPGPWDVPSPGL VPSPGLPVSAPILVRRDAAPGASKLRAVLE K P R V R R 1 2 0 1 0 0 0 2 0 1 2 0 0 0 9 2 0 1 0 3 0 0 24 1 2500.3954 Q8N884 Q8N884 132 155 MB21D1 Cyclic GMP-AMP synthase yes yes 3 9.4906E-12 63.376 2 2 1.519 1.3097 5.0684 4 Linear 1.2325 1.3225 4.1874 2 0 Median 1.4625 1.2739 6.7449 2 0 Median 92811000 38546000 54264000 28782000 12721000 16061000 64029000 25825000 38204000 10605 1914 10896 28047;28048;28049;28050 43865;43866;43867;43868;43869;43870;43871;43872 43872 8 PRPPQGLVR VFADFGNHTKAVQLKPRPPQGLVRVVGRPQ KAVQLKPRPPQGLVRVVGRPQPQLQYVDAL K P R V R V 0 2 0 0 0 1 0 1 0 0 1 0 0 0 3 0 0 0 0 1 0 0 9 1 1018.6036 Q58F09;Q13724;A8K9K4 Q58F09 666 674 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 3 0.044115 48.794 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2609000 0 2609000 2609000 0 2609000 0 0 0 10606 1720 10897 28051 43873 43873 1 PSAAAAAIAVAAAEEER PQKPAPSSQRKPPARPSAAAAAIAVAAAEE AAAAAIAVAAAEEERRLRQRNRLRLEEDKP R P S E R R 9 1 0 0 0 0 3 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 17 0 1596.8107 B2RAX6;Q9Y5J1 B2RAX6 30 46 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 4.7623E-34 151.54 2 2 1.0167 0.94398 18.075 4 Median 0.79008 0.80774 5.6218 2 0 Median 1.2716 1.0953 4.6023 2 0 Median 59048000 29907000 29141000 50918000 26555000 24363000 8130100 3351400 4778700 10607 876 10898 28052;28053;28054;28055 43874;43875;43876;43877;43878;43879;43880;43881 43877 8 PSAAAAAIAVAAAEEERR PQKPAPSSQRKPPARPSAAAAAIAVAAAEE AAAAIAVAAAEEERRLRQRNRLRLEEDKPA R P S R R L 9 2 0 0 0 0 3 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 18 1 1752.9119 B2RAX6;Q9Y5J1 B2RAX6 30 47 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 0.042046 13.627 1 1.513 1.3528 NaN 1 Median NaN NaN NaN 0 0 Median 1.513 1.3528 NaN 1 0 Median 2170800 1000800 1170000 0 0 0 2170800 1000800 1170000 10608 876 10899 28056 43882;43883 43883 2 PSAAGINLMIGSTR PVNERMLNMIRQISRPSAAGINLMIGSTRY RPSAAGINLMIGSTRYGDGPRPPKMARYDN R P S T R Y 2 1 1 0 0 0 0 2 0 2 1 0 1 0 1 2 1 0 0 0 0 0 14 0 1386.7289 Q08211;B3KU66 Q08211 1141 1154 DHX9 ATP-dependent RNA helicase A yes no 2 3.2651E-05 90.434 2 1.1596 1.2822 6.9324 2 Median 1.1596 1.2822 6.9324 2 0 Median NaN NaN NaN 0 0 Median 134570000 56155000 78415000 134570000 56155000 78415000 0 0 0 10609 1691 10900 28057;28058 43884;43885 43884 1519 1 PSASTQALSSSVSSSK RIEVQDTSGGTTALRPSASTQALSSSVSSS SASTQALSSSVSSSKLFSSSTAPHETSFGE R P S S K L 2 0 0 0 0 1 0 0 0 0 1 1 0 0 1 8 1 0 0 1 0 0 16 0 1522.7475 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 754 769 DDB1 DNA damage-binding protein 1 yes no 2 1.1246E-08 107.37 2 0.83582 0.82806 NaN 1 Median 0.83582 0.82806 NaN 1 0 Median NaN NaN NaN 0 0 Median 5927900 3263600 2664300 5927900 3263600 2664300 0 0 0 10610 1770 10901 28059;28060 43886;43887;43888 43888 3 PSATGYLGSVAAK QVPRELSLTPITGAKPSATGYLGSVAAKRP AKPSATGYLGSVAAKRPLQEDRLLPAEVKA K P S A K R 3 0 0 0 0 0 0 2 0 0 1 1 0 0 1 2 1 0 1 1 0 0 13 0 1220.6401 B3KR89;B9EGQ5;M0QXA7;O95785 B3KR89 276 288 WIZ Protein Wiz yes no 2 0.00014095 82.171 1 1 0.89679 0.78459 15.366 2 Median 0.71597 0.70381 NaN 1 0 Median 1.1233 0.87464 NaN 1 0 Median 10892000 5510800 5381300 8698800 4547100 4151800 2193300 963730 1229500 10611 932 10902 28061;28062 43889;43890;43891;43892 43890 4 PSDNLIVCGR LKDTEQYEREDFLIKPSDNLIVCGRAEQDQ DFLIKPSDNLIVCGRAEQDQCNLDVHVYNQ K P S G R A 0 1 1 1 1 0 0 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 10 0 1129.555 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5;Q86X79;Q05BL3;Q6PKI5;Q6PIN4;F8VZ56 Q9BV37 147 156 PWP1 Periodic tryptophan protein 1 homolog yes no 2 1.4773E-05 101.65 2 2 1.2966 1.0963 2.0176 2 Median NaN NaN NaN 0 0 Median 1.2966 1.0963 2.0176 2 0 Median 40763000 33293000 7470500 27787000 27787000 0 12977000 5506100 7470500 10612 339 10903 28063;28064;28065;28066 43893;43894;43895;43896;43897;43898 43898 6 PSDSVHITNDDER KNKEAIYSGYIRNRKPSDSVHITNDDERFL RKPSDSVHITNDDERFLHHLIIEEKEKDSF K P S E R F 0 1 1 3 0 0 1 0 1 1 0 0 0 0 1 2 1 0 0 1 0 0 13 0 1483.6539 A6NHR9 A6NHR9 292 304 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2;3 0.00016144 87.298 2 1.2743 1.2958 26.528 2 Median 1.2743 1.2958 26.528 2 0 Median NaN NaN NaN 0 0 Median 15629000 6919900 8709000 15629000 6919900 8709000 0 0 0 10613 684 10904 28067;28068 43899;43900;43901 43899 3 PSEADPEADPEEATAAR PQPLALQLEQLLNPRPSEADPEADPEEATA EADPEADPEEATAARVIDRFDEGEDGEGDF R P S A R V 5 1 0 2 0 0 4 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 17 0 1754.7595 Q9NY61;A0A087WW41 Q9NY61 19 35 AATF Protein AATF yes no 2 6.9834E-18 127.71 2 2 1.2083 1.1697 9.8939 4 Median 0.94869 1.0594 6.1435 2 0 Median 1.5159 1.2429 0.71401 2 0 Median 131310000 61110000 70196000 102610000 49491000 53122000 28693000 11619000 17074000 10614 2080 10905 28069;28070;28071;28072 43902;43903;43904;43905;43906;43907;43908;43909 43904 8 PSGEAFVELESEDEVK NGAQGIRFIYTREGRPSGEAFVELESEDEV SGEAFVELESEDEVKLALKKDRETMGHRYV R P S V K L 1 0 0 1 0 0 5 1 0 0 1 1 0 1 1 2 0 0 0 2 0 0 16 0 1763.8101 E9PCY7;G8JLB6;P31943;D6RIU0;D6RBM0;E7EQJ0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EN40;D6RDL0 E9PCY7 53 68 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 0.00015381 96.745 2 1.9731 2.0192 NaN 1 Median 1.9731 2.0192 NaN 1 0 Median NaN NaN NaN 0 0 Median 25645000 7996600 17649000 25645000 7996600 17649000 0 0 0 10615 1231 10906 28073;28074 43910;43911 43911 2 PSGVSAALALK KPVPGFQVAYVVFQKPSGVSAALALKGPLL VFQKPSGVSAALALKGPLLVSTESHPVKSG K P S L K G 3 0 0 0 0 0 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 11 0 1012.5917 Q9Y3A4 Q9Y3A4 126 136 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 5.028E-14 150.35 2 2 1.2111 0.99698 11.185 3 Median 1.1045 1.1939 NaN 1 0 Median 1.2182 0.98481 1.7369 2 0 Median 86405000 26026000 60379000 71604000 20109000 51495000 14801000 5916500 8884500 10616 2133 10907 28075;28076;28077;28078 43912;43913;43914;43915;43916;43917 43913 6 PSHLVDAHTAEVNCLSFNPYSEFILATGSADK QKLMIWDTRSNTTSKPSHLVDAHTAEVNCL NPYSEFILATGSADKTVALWDLRNLKLKLH K P S D K T 4 0 2 2 1 0 2 1 2 1 3 1 0 2 2 4 2 0 1 2 0 0 32 0 3489.6511 Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP01;Q5JP02 Q6FHQ0 264 295 RBBP7 Histone-binding protein RBBP7 yes no 4 2.2892E-12 59.598 2 1.785 1.4431 12.96 2 Median NaN NaN NaN 0 0 Median 1.785 1.4431 12.96 2 0 Median 46823000 16214000 30609000 0 0 0 46823000 16214000 30609000 10617 1771 10908 28079;28080 43918;43919 43918 2 PSLLADSK ADILLFASYKWNVSRPSLLADSKDVMDSTT YKWNVSRPSLLADSKDVMDSTTTQKYWIDI R P S S K D 1 0 0 1 0 0 0 0 0 0 2 1 0 0 1 2 0 0 0 0 0 0 8 0 829.45453 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1642 1649 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.027474 53.878 1 0.96028 0.97102 NaN 1 Median 0.96028 0.97102 NaN 1 0 Median NaN NaN NaN 0 0 Median 13120000 5811300 7308400 13120000 5811300 7308400 0 0 0 10618 1854 10909 28081 43920 43920 1 PSLLLRPR FGSVCFSYTNGCHLKPSLLLRPRGKDERLV TNGCHLKPSLLLRPRGKDERLVTVRLHPCP K P S P R G 0 2 0 0 0 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 8 1 950.60253 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 235 242 NOL6 Nucleolar protein 6 yes no 3 0.0065722 63.48 2 0.98467 1.1092 4.65 2 Median 0.98467 1.1092 4.65 2 0 Median NaN NaN NaN 0 0 Median 139460000 70891000 68567000 139460000 70891000 68567000 0 0 0 10619 2038 10910 28082;28083 43921;43922;43923 43921 3 PSLSGVAPLPR GDLWTLDIDTLTWNKPSLSGVAPLPRSLHS TWNKPSLSGVAPLPRSLHSATTIGNKMYVF K P S P R S 1 1 0 0 0 0 0 1 0 0 2 0 0 0 3 2 0 0 0 1 0 0 11 0 1092.6291 A6NEM2;P51610;Q05C05 A6NEM2 245 255 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.00032567 96.331 2 1 0.6711 0.68563 35.876 3 Median 0.66009 0.66818 3.6454 2 0 Median 1.375 1.2418 NaN 1 0 Median 34433000 20579000 13854000 32330000 19838000 12491000 2103000 740300 1362700 10620 680 10911 28084;28085;28086 43924;43925;43926;43927 43925 4 PSLSLGTITDEEMK VCPPHLKTCYPLESRPSLSLGTITDEEMKT RPSLSLGTITDEEMKTGDPQETLRRASMQP R P S M K T 0 0 0 1 0 0 2 1 0 1 2 1 1 0 1 2 2 0 0 0 0 0 14 0 1519.744 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1930 1943 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0011977 61.419 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10621 186;1747 10912 28087;28088 43928;43929 43928 151 2 PSNELTNSTVVIDTHK SKNNTVVGKHCIPLKPSNELTNSTVVIDTH SNELTNSTVVIDTHKPKDSNQTPHLLLTED K P S H K P 0 0 2 1 0 0 1 0 1 1 1 1 0 0 1 2 3 0 0 2 0 0 16 0 1753.8846 B2RMQ4;Q8WWK9;C9J7Y4;C9J649 B2RMQ4 104 119 CKAP2 Cytoskeleton-associated protein 2 yes no 3 0.017667 22.405 1 0.9562 0.99178 NaN 1 Median 0.9562 0.99178 NaN 1 0 Median NaN NaN NaN 0 0 Median 18798000 8362500 10436000 18798000 8362500 10436000 0 0 0 10622 895 10913 28089 43930;43931 43931 2 PSNIFLVDTK VDYIHSKKLIHRDLKPSNIFLVDTKQVKIG HRDLKPSNIFLVDTKQVKIGDFGLVTSLKN K P S T K Q 0 0 1 1 0 0 0 0 0 1 1 1 0 1 1 1 1 0 0 1 0 0 10 0 1132.6128 Q8IW76;B7ZKK7;P19525 Q8IW76 417 426 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 5.3799E-06 108.7 1 1.2892 1.3415 NaN 1 Median 1.2892 1.3415 NaN 1 0 Median NaN NaN NaN 0 0 Median 16886000 8881300 8004200 16886000 8881300 8004200 0 0 0 10623 1111 10914 28090 43932;43933 43933 2 PSNILDYFR SPLGKTRDRVFAPPKPSNILDYFRKTSPTN VFAPPKPSNILDYFRKTSPTNEKTQLGKEC K P S F R K 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 0 9 0 1123.5662 Q96QE3;H0UIC2;A0A075B754 Q96QE3 59 67 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.0062323 64.711 2 2 4.3733 3.8993 12.788 2 Median NaN NaN NaN 0 0 Median 4.3733 3.8993 12.788 2 0 Median 6114200 2795600 3318600 2099900 2099900 0 4014300 695680 3318600 10624 1984 10915 28091;28092;28093;28094 43934;43935;43936;43937 43936 4 PSNILVNSR AYLREKHQIMHRDVKPSNILVNSRGEIKLC MHRDVKPSNILVNSRGEIKLCDFGVSGQLI K P S S R G 0 1 2 0 0 0 0 0 0 1 1 0 0 0 1 2 0 0 0 1 0 0 9 0 998.55089 B4DFY5;A4QPA9;Q02750;H3BRW9;B3KS97;P36507;Q7Z370;G5E9C7;A0A1B0GUL7 P36507 197 205 MAP2K1;MAP2K2;DKFZp686L02273 Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2 no no 2 0.0019868 78.264 1 2.2228 2.329 NaN 1 Median 2.2228 2.329 NaN 1 0 Median NaN NaN NaN 0 0 Median 12455000 4834700 7619900 12455000 4834700 7619900 0 0 0 10625 1547;674 10916 28095 43938 43938 1 PSNILYVDESGNPESIR VEYLHAQGVVHRDLKPSNILYVDESGNPES NILYVDESGNPESIRICDFGFAKQLRAENG K P S I R I 0 1 2 1 0 0 2 1 0 2 1 0 0 0 2 3 0 0 1 1 0 0 17 0 1888.9167 B4DKZ2;B4DG22;B7ZB17;P51812 B4DKZ2 512 528 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 1.2639E-06 88.552 3 1.089 1.0988 NaN 1 Median 1.089 1.0988 NaN 1 0 Median NaN NaN NaN 0 0 Median 9528200 4551300 4976900 9528200 4551300 4976900 0 0 0 10626 971 10917 28096;28097;28098 43939;43940;43941;43942;43943 43940 5 PSNPSSHEVVAWIR EIGDYIRTGFINLDKPSNPSSHEVVAWIRR KPSNPSSHEVVAWIRRILRVEKTGHSGTLD K P S I R R 1 1 1 0 0 0 1 0 1 1 0 0 0 0 2 3 0 1 0 2 0 0 14 0 1577.795 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 97 110 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 3 0.001238 47.639 1 2 0.67275 0.58736 10.38 3 Median 0.66462 0.69244 NaN 1 0 Median 0.68831 0.5794 1.9307 2 0 Median 54008000 32748000 21259000 38360000 23932000 14428000 15648000 8816000 6831700 10627 1398 10918 28099;28100;28101 43944;43945;43946;43947;43948;43949 43944 6 PSNVLINALGQVK EHLHSKLSVIHRDVKPSNVLINALGQVKMC VKPSNVLINALGQVKMCDFGISGYLVDSVA K P S V K M 1 0 2 0 0 1 0 1 0 1 2 1 0 0 1 1 0 0 0 2 0 0 13 0 1351.7823 B5BU16;A8K3Y2;P52564;A0A024R8K3 B5BU16 182 194 MAP2K6 Dual specificity mitogen-activated protein kinase kinase 6 yes no 2 0.00037217 85.958 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6975300 0 6975300 6975300 0 6975300 0 0 0 10628 728 10919 28102;28103 43950;43951 43951 2 PSPLTLAPHDFANIK TLELATLGDLKLVEKPSPLTLAPHDFANIK PSPLTLAPHDFANIKANVKVASTENGIIFG K P S I K A 2 0 1 1 0 0 0 0 1 1 2 1 0 1 3 1 1 0 0 0 0 0 15 0 1619.8671 P53618 P53618 772 786 COPB1 Coatomer subunit beta yes yes 3 0.0093308 27.263 1 1.2596 1.3245 NaN 1 Median 1.2596 1.3245 NaN 1 0 Median NaN NaN NaN 0 0 Median 19703000 7238100 12465000 19703000 7238100 12465000 0 0 0 10629 1606 10920 28104 43952 43952 1 PSPPYFGLLLASVGR VGVQYHPEFLSRPIKPSPPYFGLLLASVGR PSPPYFGLLLASVGRLSHYLQKGCRLSPRD K P S G R L 1 1 0 0 0 0 0 2 0 0 3 0 0 1 3 2 0 0 1 1 0 0 15 0 1572.8664 P17812;B4E1E0 P17812 536 550 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.00071374 60.161 1 1.7168 1.8031 NaN 1 Median 1.7168 1.8031 NaN 1 0 Median NaN NaN NaN 0 0 Median 11762000 4486000 7276000 11762000 4486000 7276000 0 0 0 10630 1494 10921 28105 43953;43954;43955 43953 3 PSQAPAVEVAPAGASYNPSFEDHQTLLSAAHEVELQR TKKKGVKRPARLHTKPSQAPAVEVAPAGAS HQTLLSAAHEVELQRQKEAEKLERQLALPA K P S Q R Q 7 1 1 1 0 3 4 1 2 0 3 0 0 1 4 4 1 0 1 3 0 0 37 0 3915.9028 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4E013;M0QX73 Q7L4X7 228 264 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 4 4.6275E-05 36.338 1 1.0008 0.87298 NaN 1 Median NaN NaN NaN 0 0 Median 1.0008 0.87298 NaN 1 0 Median 27061000 15007000 12054000 0 0 0 27061000 15007000 12054000 10631 1068 10922 28106 43956;43957 43957 2 PSQCSEFIQQSSMK KISRLLDLVVQPVPRPSQCSEFIQQSSMKS RPSQCSEFIQQSSMKSPLYLVSRSLPSSSQ R P S M K S 0 0 0 0 1 3 1 0 0 1 0 1 1 1 1 4 0 0 0 0 0 0 14 0 1655.7283 Q8WYP5;B3KVE5 Q8WYP5 1128 1141 AHCTF1 Protein ELYS yes no 2 0.00091086 63.966 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4069500 0 4069500 4069500 0 4069500 0 0 0 10632 1945 10923 28107;28108 43958;43959 43958 1789 2 PSQVNGAPGSPTEPAGQK STPAKSPKLQKKNQKPSQVNGAPGSPTEPA VNGAPGSPTEPAGQKQHQKALPKKGVLGKS K P S Q K Q 2 0 1 0 0 2 1 3 0 0 0 1 0 0 4 2 1 0 0 1 0 0 18 0 1720.838 Q9BQG0;I3L1L3;B4DZZ1;B4DE42 Q9BQG0 1258 1275 MYBBP1A Myb-binding protein 1A yes no 2 1.8351E-22 132.97 2 1.1232 1.1401 9.3108 2 Median 1.1232 1.1401 9.3108 2 0 Median NaN NaN NaN 0 0 Median 15196000 6812100 8383500 15196000 6812100 8383500 0 0 0 10633 1997 10924 28109;28110 43960;43961;43962;43963 43962 4 PSSFQNNVQSQDPQVSTK EEDYSGLTEDMLLPRPSSFQNNVQSQDPQV FQNNVQSQDPQVSTKTGEPLMSESTSNIDQ R P S T K T 0 0 2 1 0 4 0 0 0 0 0 1 0 1 2 4 1 0 0 2 0 0 18 0 1989.9392 D3DS96;Q9NRL2;Q59G54 D3DS96 840 857 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 4.0952E-23 119.87 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12902000 0 12902000 12902000 0 12902000 0 0 0 10634 1187 10925 28111;28112 43964;43965;43966 43964 3 PSSSPVIFAGGQDR SQSPPKGVTIPYRPKPSSSPVIFAGGQDRY KPSSSPVIFAGGQDRYSTGSDSASFPHTTP K P S D R Y 1 1 0 1 0 1 0 2 0 1 0 0 0 1 2 3 0 0 0 1 0 0 14 0 1416.6997 Q15366;B4DLC0;H3BSS4 Q15366 186 199 PCBP2 Poly(rC)-binding protein 2 yes no 2 1.387E-37 167.2 2 2 2.1656 2.076 30.639 4 Median 2.4486 2.7553 6.8877 2 0 Median 1.9926 1.6282 1.2144 2 0 Median 204580000 60048000 144530000 182350000 53014000 129330000 22231000 7034100 15197000 10635 1760 10926 28113;28114;28115;28116 43967;43968;43969;43970;43971;43972;43973;43974 43967 8 PSSSPVIFAGGQLTK SQSPPKGVTIPYRPKPSSSPVIFAGGQLTK PSSSPVIFAGGQLTKLHQLAMQQSHFPMTH K P S T K L 1 0 0 0 0 1 0 2 0 1 1 1 0 1 2 3 1 0 0 1 0 0 15 0 1487.7984 H3BRU6;F8VZX2;B4DRD7 H3BRU6 167 181 PCBP2 yes no 2 0.02923 27.681 1 1.5322 1.2962 NaN 1 Median NaN NaN NaN 0 0 Median 1.5322 1.2962 NaN 1 0 Median 1450700 650890 799820 0 0 0 1450700 650890 799820 10636 1263 10927 28117 43975 43975 1 PSVVSLQNLIVR LQEKDQKYIFPTLDKPSVVSLQNLIVRDIA LDKPSVVSLQNLIVRDIANQEKGMFLISAA K P S V R D 0 1 1 0 0 1 0 0 0 1 2 0 0 0 1 2 0 0 0 3 0 0 12 0 1323.7874 D3DVA5;V9GYM8;Q92974 D3DVA5 562 573 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 2 0.00020601 79.974 1 0.94145 0.9385 NaN 1 Median 0.94145 0.9385 NaN 1 0 Median NaN NaN NaN 0 0 Median 7093400 3532100 3561300 7093400 3532100 3561300 0 0 0 10637 1197 10928 28118 43976 43976 1 PSVYLGLFDINR VSVFTWQVNIYGQGKPSVYLGLFDINRWYH QGKPSVYLGLFDINRWYHAQMPDSLRSGEY K P S N R W 0 1 1 1 0 0 0 1 0 1 2 0 0 1 1 1 0 0 1 1 0 0 12 0 1392.7402 Q8WYP5;Q96M44 Q8WYP5 395 406 AHCTF1 Protein ELYS yes no 2 4.6886E-08 114.83 1 2 2.3843 1.9627 28.547 3 Median 1.2332 1.2354 NaN 1 0 Median 2.3961 2.0205 4.1002 2 0 Median 60430000 19495000 40935000 18522000 7248200 11273000 41909000 12247000 29662000 10638 1945 10929 28119;28120;28121 43977;43978;43979;43980;43981;43982 43977 6 PTHFTVNAK AEGPGLSRTGVELGKPTHFTVNAKAAGKGK GVELGKPTHFTVNAKAAGKGKLDVQFSGLT K P T A K A 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 2 0 0 1 0 0 9 0 1013.5294 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 892 900 FLNA Filamin-A yes no 3 0.038896 20.972 1 1.4708 1.4527 NaN 1 Median 1.4708 1.4527 NaN 1 0 Median NaN NaN NaN 0 0 Median 9342900 3594700 5748200 9342900 3594700 5748200 0 0 0 10639 1504 10930 28122 43983 43983 1 PTLSEIELFR YITNDTVQTYNQLLKPTLSEIELFRVFSLS NQLLKPTLSEIELFRVFSLSSEFKNITVRE K P T F R V 0 1 0 0 0 0 2 0 0 1 2 0 0 1 1 1 1 0 0 0 0 0 10 0 1203.6499 O75643;A4FU77 O75643 1007 1016 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.3415E-08 123.21 2 2 1.0339 1.1373 16.674 4 Linear 1.0387 1.1225 2.1924 2 0 Median 1.0131 0.85173 8.1889 2 0 Median 94457000 47426000 47031000 83797000 42450000 41347000 10660000 4976300 5684100 10640 1411 10931 28123;28124;28125;28126 43984;43985;43986;43987;43988;43989;43990;43991 43984 8 PTPALSEASSSSIR EESLKTDHPEIGEGKPTPALSEASSSSIRE KPTPALSEASSSSIRERPPEEVAARLAQQE K P T I R E 2 1 0 0 0 0 1 0 0 1 1 0 0 0 2 5 1 0 0 0 0 0 14 0 1401.71 C9J406 C9J406 83 96 IMMT no no 2 0.0028371 59.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10641 1128 10932 28127 43992 43992 1 PTPALSEEASSSSIR EESLKTDHPEIGEGKPTPALSEEASSSSIR PTPALSEEASSSSIRERPPEEVAARLAQQE K P T I R E 2 1 0 0 0 0 2 0 0 1 1 0 0 0 2 5 1 0 0 0 0 0 15 0 1530.7526 B4DS66;Q16891;B4DKR1;Q05DN3 Q16891 181 195 IMMT MICOS complex subunit MIC60 no no 2 0.0001936 96.745 1 0.72975 0.72221 NaN 1 Median 0.72975 0.72221 NaN 1 0 Median NaN NaN NaN 0 0 Median 12360000 6661600 5698000 12360000 6661600 5698000 0 0 0 10642 1774;1029 10933 28128 43993;43994 43993 2 PTPGLTPR TVTPAVGRLEVSMVKPTPGLTPRFDSRVFK LEVSMVKPTPGLTPRFDSRVFKTPGLRTPA K P T P R F 0 1 0 0 0 0 0 1 0 0 1 0 0 0 3 0 2 0 0 0 0 0 8 0 837.47085 Q53HL2;A8K7A2;B4DXT3 Q53HL2 184 191 CDCA8 Borealin yes no 2 0.015121 61.962 2 0.9473 1.0838 6.0824 2 Median 0.9473 1.0838 6.0824 2 0 Median NaN NaN NaN 0 0 Median 274060000 138760000 135310000 274060000 138760000 135310000 0 0 0 10643 1789 10934 28129;28130 43995;43996 43995 2 PTPLILDEQGR MGIAPPKVELKDQTKPTPLILDEQGRTVDA DQTKPTPLILDEQGRTVDATGKEIELTHRM K P T G R T 0 1 0 1 0 1 1 1 0 1 2 0 0 0 2 0 1 0 0 0 0 0 11 0 1237.6667 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 239 249 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 2 0.022466 50.292 2 0.89521 0.9357 NaN 1 Median 0.89521 0.9357 NaN 1 0 Median NaN NaN NaN 0 0 Median 15076000 4756600 10319000 15076000 4756600 10319000 0 0 0 10644 848 10935 28131;28132 43997;43998 43997 2 PTSFQPQPFK FYDQHGGEVIGVLWKPTSFQPQPFKASSTK GVLWKPTSFQPQPFKASSTKGRMVMSRGGE K P T F K A 0 0 0 0 0 2 0 0 0 0 0 1 0 2 3 1 1 0 0 0 0 0 10 0 1175.5975 Q9H6R4;B4DF80;B3KPN5;A0A0C4DFX0 Q9H6R4 1088 1097 NOL6 Nucleolar protein 6 yes no 2 2.874E-30 179.28 2 1 0.89222 1.0024 15.114 2 Median 0.89222 1.0024 15.114 2 0 Median NaN NaN NaN 0 0 Median 149000000 71971000 77029000 149000000 71971000 77029000 0 0 0 10645 2038 10936 28133;28134;28135 43999;44000;44001;44002 43999 4 PTVTVNFR MCRCLMALKVPTTEKPTVTVNFRKLLLNRC KVPTTEKPTVTVNFRKLLLNRCQKEFEKDK K P T F R K 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 2 0 0 2 0 0 8 0 932.50797 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073 E7EX73 670 677 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.0088675 76.774 2 2.077 2.1924 9.3814 2 Median 2.077 2.1924 9.3814 2 0 Median NaN NaN NaN 0 0 Median 49214000 15862000 33352000 49214000 15862000 33352000 0 0 0 10646 896 10937 28136;28137 44003;44004 44004 2 PVAIQTYPILGEK ______________________________ YKPVAIQTYPILGEKITQDTLYWNNYKTPV K P V E K I 1 0 0 0 0 1 1 1 0 2 1 1 0 0 2 0 1 0 1 1 0 0 13 0 1427.8024 Q8TED0;D6RF65 Q8TED0 6 18 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 8.5744E-09 116.55 2 2 1.1245 1.0558 9.4824 4 Median 0.92997 1.0296 0.62022 2 0 Median 1.4389 1.1642 10.881 2 0 Median 131540000 69537000 62001000 117010000 63491000 53517000 14531000 6046100 8484500 10647 1936 10938 28138;28139;28140;28141 44005;44006;44007;44008;44009;44010;44011;44012;44013;44014 44005 10 PVASQLPR KDLQNVNITLRILFRPVASQLPRIFTSIGE TLRILFRPVASQLPRIFTSIGEDYDERVLP R P V P R I 1 1 0 0 0 1 0 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 8 0 866.4974 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 98 105 HEL-S-54e;PHB Prohibitin yes no 2 0.0083247 79.116 2 1.1714 1.2387 13.511 2 Median 1.1714 1.2387 13.511 2 0 Median NaN NaN NaN 0 0 Median 68259000 27926000 40332000 68259000 27926000 40332000 0 0 0 10648 730 10939 28142;28143 44015;44016 44015 2 PVAVSELFTTLPIVQGK ______________________________ AVSELFTTLPIVQGKSRPIKILTRLTIIVS K P V G K S 1 0 0 0 0 1 1 1 0 1 2 1 0 1 2 1 2 0 0 3 0 0 17 0 1798.024 Q5VU10;P78346;B4DJR3;Q5VU11 Q5VU10 5 21 RPP30 Ribonuclease P protein subunit p30 yes no 2 3.2277E-47 159.99 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12351000 12351000 0 12351000 12351000 0 0 0 0 10649 1663 10940 28144;28145 44017;44018 44017 2 PVCPLCK CRSCTTDVRPISGSRPVCPLCKKPFKKENI VRPISGSRPVCPLCKKPFKKENIRPVWQLA R P V C K K 0 0 0 0 2 0 0 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 7 0 872.42483 A0A024RCP3;Q12899;A2AE48;A0A0G2JIW2;A2AE50;Q5SPU2 A0A024RCP3 51 57 TRIM26 Tripartite motif-containing protein 26 yes no 2 0.032615 65.263 1 0.49554 0.50334 NaN 1 Median 0.49554 0.50334 NaN 1 0 Median NaN NaN NaN 0 0 Median 9131400 6126200 3005200 9131400 6126200 3005200 0 0 0 10650 365 10941 28146 44019 44019 1 PVDNTYYK LRKANLQQAIVTPLKPVDNTYYKEAEKENL AIVTPLKPVDNTYYKEAEKENLVEQSIPSN K P V Y K E 0 0 1 1 0 0 0 0 0 0 0 1 0 0 1 0 1 0 2 1 0 0 8 0 998.47091 Q643R0;Q9ULW0 Q643R0 76 83 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.0056627 82.75 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10651 1837 10942 28147 44020 44020 1 PVEIEIETPEQAK VRESTAFSRSLLPVKPVEIEIETPEQAKTR VKPVEIEIETPEQAKTRERSEKIKLEFETY K P V A K T 1 0 0 0 0 1 4 0 0 2 0 1 0 0 2 0 1 0 0 1 0 0 13 0 1481.7613 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPI9;D2CPJ0;D2CPK1;E7EUB5 A0A024R2M8 162 174 XPC DNA repair protein complementing XP-C cells yes no 2 0.01138 40.616 1 1.5373 1.2842 NaN 1 Median NaN NaN NaN 0 0 Median 1.5373 1.2842 NaN 1 0 Median 1323600 716560 607000 0 0 0 1323600 716560 607000 10652 118 10943 28148 44021 44021 1 PVFLPR SDTTSPELREHLAQKPVFLPRNLRRIRKCQ ELREHLAQKPVFLPRNLRRIRKCQRGREQQ K P V P R N 0 1 0 0 0 0 0 0 0 0 1 0 0 1 2 0 0 0 0 1 0 0 6 0 727.4381 Q96ST3;B3KQE3 Q96ST3 1123 1128 SIN3A Paired amphipathic helix protein Sin3a yes no 2 0.050279 74.417 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10653 1990 10944 28149 44022 44022 1 PVGLLLSER SMVEQLDKFLNDTTKPVGLLLSERFINVPP LNDTTKPVGLLLSERFINVPPQIALPMYQQ K P V E R F 0 1 0 0 0 0 1 1 0 0 3 0 0 0 1 1 0 0 0 1 0 0 9 0 982.58113 Q9P287;B4E318;B4DUS0 Q9P287 175 183 BCCIP BRCA2 and CDKN1A-interacting protein yes no 2 0.016119 54.157 2 2.3581 2.3883 NaN 1 Median 2.3581 2.3883 NaN 1 0 Median NaN NaN NaN 0 0 Median 14503000 1990200 12513000 14503000 1990200 12513000 0 0 0 10654 2094 10945 28150;28151 44023;44024 44023 2 PVGSLAGIGEVLGK SQKHRDFVAEPMGEKPVGSLAGIGEVLGKK KPVGSLAGIGEVLGKKLEERGFDKAYVVLG K P V G K K 1 0 0 0 0 0 1 4 0 1 2 1 0 0 1 1 0 0 0 2 0 0 14 0 1295.7449 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 19 32 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 3.8966E-84 224.66 2 2 0.93133 0.94489 16.021 4 Median 0.91345 1.089 1.0572 2 0 Median 0.94155 0.82531 0.1114 2 0 Median 3220900000 1686100000 1534800000 2609100000 1375200000 1233900000 611810000 310910000 300900000 10655 181 10946 28152;28153;28154;28155 44025;44026;44027;44028;44029;44030;44031;44032;44033;44034;44035;44036;44037;44038;44039;44040;44041;44042;44043 44036 19 PVHHGVNQLK GGRKRPVPKGATYGKPVHHGVNQLKFARSL ATYGKPVHHGVNQLKFARSLQSVAEERAGR K P V L K F 0 0 1 0 0 1 0 1 2 0 1 1 0 0 1 0 0 0 0 2 0 0 10 0 1127.62 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7ENU7;E7EX53;B4DEN1 A0A024R2Q4 84 93 RPL15 Ribosomal protein L15;60S ribosomal protein L15 no no 2;3 1.7143E-30 204.65 4 3 0.88016 0.98675 26.366 7 Median 0.92431 1.0802 4.5515 4 0 Linear 0.75749 0.63387 2.4198 3 0 Median 761750000 404960000 356790000 665290000 351230000 314060000 96456000 53724000 42732000 10656 121 10947 28156;28157;28158;28159;28160;28161;28162 44044;44045;44046;44047;44048;44049;44050;44051;44052;44053;44054;44055;44056;44057 44050 14 PVHLTAFLGYK HRGKVKSFPKDDPSKPVHLTAFLGYKAGMT DPSKPVHLTAFLGYKAGMTHIVREVDRPGS K P V Y K A 1 0 0 0 0 0 0 1 1 0 2 1 0 1 1 0 1 0 1 1 0 0 11 0 1244.6917 P39023;Q8TBW1;Q96QL0;H7C422;H7C3M2;B4DN06;F8WCR1;B3KS36 P39023 40 50 RPL3 60S ribosomal protein L3 no no 3 7.3887E-05 72.434 6 1 0.97609 0.97554 14.078 6 Median 0.96877 1.0872 13.621 5 0 Median 1.0433 0.85214 NaN 1 0 Median 525280000 265240000 260040000 491790000 248450000 243340000 33495000 16789000 16705000 10657 1554;936 10948 28163;28164;28165;28166;28167;28168;28169 44058;44059;44060;44061;44062;44063;44064;44065;44066;44067;44068;44069;44070;44071 44067 14 PVIACSVTIK VRSKQALGRACGVSRPVIACSVTIKEGSQL CGVSRPVIACSVTIKEGSQLKQQIQSIQQS R P V I K E 1 0 0 0 1 0 0 0 0 2 0 1 0 0 1 1 1 0 0 2 0 0 10 0 1086.6107 Q6FHM6;B1AHD1;P55769 Q6FHM6 98 107 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2 8.365E-07 112.11 2 1 0.65502 0.71071 3.3027 3 Median 0.65411 0.69303 3.5627 2 0 Median 0.91055 0.71915 NaN 1 0 Median 74393000 43894000 30500000 68351000 40644000 27707000 6042100 3249700 2792400 10658 812 10949 28170;28171;28172 44072;44073;44074;44075;44076 44074 5 PVLMALAEGPGAEGPR AIGAPPTATEGPETKPVLMALAEGPGAEGP VLMALAEGPGAEGPRLASPSGSTSSGLEVV K P V P R L 3 1 0 0 0 0 2 3 0 0 2 0 1 0 3 0 0 0 0 1 0 0 16 0 1563.8079 B2R8R5;Q13263;M0R0K9 B2R8R5 576 591 TRIM28 Transcription intermediary factor 1-beta yes no 2 8.6526E-05 68.355 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2708500 0 2708500 2708500 0 2708500 0 0 0 10659 862 10950 28173 44077 44077 673 1 PVLNFYEANFPANVMDVIAR RRSKEITVRGHNCPKPVLNFYEANFPANVM YEANFPANVMDVIARQNFTEPTAIQAQGWP K P V A R Q 3 1 3 1 0 0 1 0 0 1 1 0 1 2 2 0 0 0 1 3 0 0 20 0 2279.1409 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;J3QRQ7;J3KRX8 B4DN41 81 100 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 5.7395E-10 98.531 3 1.9941 2.0172 17.693 2 Median 1.9941 2.0172 17.693 2 0 Median NaN NaN NaN 0 0 Median 21460000 5184300 16276000 21460000 5184300 16276000 0 0 0 10660 1009 10951 28174;28175;28176 44078;44079;44080 44080 798 3 PVLTQESATYIAEEYSR AAFMKKYIHVAKIIKPVLTQESATYIAEEY LTQESATYIAEEYSRLRSQDSMSSDTARTS K P V S R L 2 1 0 0 0 1 3 0 0 1 1 0 0 0 1 2 2 0 2 1 0 0 17 0 1955.9476 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46;Q7Z6P5 Q53HJ4 580 596 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 4.7727E-13 111.12 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11770000 8351700 3417900 8351700 8351700 0 3417900 0 3417900 10661 568 10952 28177;28178;28179;28180;28181 44081;44082;44083;44084;44085;44086;44087 44084 7 PVPAVPVQK PRCSTAIATGLKNQKPVPAVPVQKSGTSGV GLKNQKPVPAVPVQKSGTSGVPPMAGGKKP K P V Q K S 1 0 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 0 0 3 0 0 9 0 933.56475 A0A024RCS7;Q9BW19;B4E063;A2AB20;A0A140T9E6 A0A024RCS7 108 116 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.021801 57.471 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16215000 16215000 0 16215000 16215000 0 0 0 0 10662 371 10953 28182 44088 44088 1 PVPGFQVAYVVFQK AESPKESRSKFFHPKPVPGFQVAYVVFQKP KPVPGFQVAYVVFQKPSGVSAALALKGPLL K P V Q K P 1 0 0 0 0 2 0 1 0 0 0 1 0 2 2 0 0 0 1 4 0 0 14 0 1577.8606 Q9Y3A4 Q9Y3A4 112 125 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 8.6094E-38 170.47 2 2 1.1605 1.202 9.2536 4 Linear 1.0464 1.1491 7.1133 2 0 Median 1.29 1.0184 7.7783 2 0 Median 114560000 54256000 60308000 87743000 42514000 45229000 26821000 11742000 15079000 10663 2133 10954 28183;28184;28185;28186 44089;44090;44091;44092;44093;44094 44092 6 PVPQVDEAETR QEDDFGVAWVEAFAKPVPQVDEAETRVVKD AFAKPVPQVDEAETRVVKDLAKVSVKEKLK K P V T R V 1 1 0 1 0 1 2 0 0 0 0 0 0 0 2 0 1 0 0 2 0 0 11 0 1239.6095 Q9NQZ2 Q9NQZ2 192 202 UTP3 Something about silencing protein 10 yes yes 2 0.00026225 90.108 2 2 1.1642 1.264 9.7679 3 Plateau 1.1185 1.264 7.9762 2 0 Median 1.3459 1.101 NaN 1 0 Median 170980000 77846000 93133000 152970000 71868000 81105000 18006000 5977800 12029000 10664 2063 10955 28187;28188;28189;28190 44095;44096;44097;44098;44099;44100;44101 44095 7 PVQDLIK KKLTVNPGTKSKLPKPVQDLIKMIFDVESM GTKSKLPKPVQDLIKMIFDVESMKKAMVEY K P V I K M 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 7 0 811.48035 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 668 674 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.027085 87.323 1 2 1.0982 0.88247 8.784 3 Median 0.6679 0.78404 NaN 1 0 Median 1.1305 0.90634 3.7748 2 0 Median 379790000 213720000 166070000 342720000 196290000 146420000 37074000 17429000 19645000 10665 139 10956 28191;28192;28193 44102;44103;44104;44105;44106 44102 5 PVQLFK DGTVKCWDARVAREKPVQLFKGYPSNIFIS WDARVAREKPVQLFKGYPSNIFISFDINCN K P V F K G 0 0 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 6 0 730.43776 A0A024R667;Q96FK6;G3V4B8 A0A024R667 106 111 C14orf150;WDR89 WD repeat-containing protein 89 yes no 2 0.033588 85.909 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10666 198 10957 28194 44107 44107 1 PVQTSAVTGQASTGPVTQIIQTK LISNLGKVMSVVQTKPVQTSAVTGQASTGP GQASTGPVTQIIQTKGPLPAGTILKLVTSA K P V T K G 2 0 0 0 0 4 0 2 0 2 0 1 0 0 2 2 5 0 0 3 0 0 23 0 2311.2383 A6NEM2;P51610 A6NEM2 691 713 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.0017569 32.302 2 1.4033 1.1157 4.0301 2 Median NaN NaN NaN 0 0 Median 1.4033 1.1157 4.0301 2 0 Median 8720700 3238100 5482600 0 0 0 8720700 3238100 5482600 10667 680 10958 28195;28196 44108;44109 44109 2 PVSFLPQNK DSGGTSAKESECITKPVSFLPQNKEEIERT SECITKPVSFLPQNKEEIERTIKNIQGTIT K P V N K E 0 0 1 0 0 1 0 0 0 0 1 1 0 1 2 1 0 0 0 1 0 0 9 0 1028.5655 O75691 O75691 1761 1769 UTP20 Small subunit processome component 20 homolog yes yes 2 2.511E-05 113.5 2 1.0616 1.0713 NaN 1 Median 1.0616 1.0713 NaN 1 0 Median NaN NaN NaN 0 0 Median 38521000 13110000 25411000 38521000 13110000 25411000 0 0 0 10668 1412 10959 28197;28198 44110;44111 44110 2 PVSPLLLASGMAR AEQQQLIDDHFLFDKPVSPLLLASGMARDW DKPVSPLLLASGMARDWPDARGIWHNDNKT K P V A R D 2 1 0 0 0 0 0 1 0 0 3 0 1 0 2 2 0 0 0 1 0 0 13 0 1310.738 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;H0YJG0;G3V4N7;B4DNF8;B4DUP1;B2R892;P06732 V9HWH2 197 209 HEL-S-29;HEL-211;CKB;CKM Creatine kinase B-type;Creatine kinase M-type;Creatine kinase M-type, N-terminally processed yes no 2 2.6245E-06 99.522 2 8.6166 8.9992 NaN 1 Median 8.6166 8.9992 NaN 1 0 Median NaN NaN NaN 0 0 Median 43969000 3744200 40225000 43969000 3744200 40225000 0 0 0 10669 557 10960 28199;28200 44112;44113 44112 415 2 PVSPLLTAAGMAR AEQQQLIDDHFLFDKPVSPLLTAAGMARDW DKPVSPLLTAAGMARDWPDARGIWHNNEKS K P V A R D 3 1 0 0 0 0 0 1 0 0 2 0 1 0 2 1 1 0 0 1 0 0 13 0 1282.7067 P12532;B7Z9T7;B4DJW9;B4DF72;B4DGR9;B4DFE8;E9PCP8;B4DH34;F8WCN3;B4DF55 P12532 230 242 CKMT1A;CKMT1B Creatine kinase U-type, mitochondrial yes no 2 0.019756 42.336 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10670 1475 10961 28201 44114 44114 1218 1 PVSSAASVYAGAGGSGSR YRSLGSVQAPSYGARPVSSAASVYAGAGGS SAASVYAGAGGSGSRISVSRSTSFRGGMGS R P V S R I 4 1 0 0 0 0 0 4 0 0 0 0 0 0 1 5 0 0 1 2 0 0 18 0 1579.759 F8VZY9;B2RA03;A0A024RAY2;P05783 F8VZY9 28 45 KRT18 Keratin, type I cytoskeletal 18 yes no 2 3.0588E-93 212.17 3 2 1.4353 1.4495 4.1245 4 Median 1.1941 1.4074 5.3559 2 0 Median 1.6892 1.464 2.6052 2 0 Median 1341700000 628580000 713140000 1221700000 583560000 638180000 119980000 45025000 74952000 10671 316 10962 28202;28203;28204;28205;28206 44115;44116;44117;44118;44119;44120;44121;44122;44123;44124;44125;44126;44127;44128 44115 14 PVTDFFLQLVDAGK SIMAERLANQFAIYKPVTDFFLQLVDAGKV KPVTDFFLQLVDAGKVDDARALLQRCGAIA K P V G K V 1 0 0 2 0 1 0 1 0 0 2 1 0 2 1 0 1 0 0 2 0 0 14 0 1548.8188 E5KNY5;P42704 E5KNY5 1253 1266 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.052881 50.284 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10672 1207 10963 28207 44129 44129 1 PVTQVTWHGR EERQVGLRLRICHGKPVTQVTWHGRGDYLA ICHGKPVTQVTWHGRGDYLAVVLATQGHTQ K P V G R G 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 2 1 0 2 0 0 10 0 1179.6149 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 536 545 BOP1 Ribosome biogenesis protein BOP1 yes no 3 0.00070155 57.347 1 0.74239 0.74464 NaN 1 Median 0.74239 0.74464 NaN 1 0 Median NaN NaN NaN 0 0 Median 17628000 10057000 7570600 17628000 10057000 7570600 0 0 0 10673 1726 10964 28208 44130;44131;44132 44131 3 PVTTPEEIAQVATISANGDK LAVDAVIAELKKQSKPVTTPEEIAQVATIS EEIAQVATISANGDKEIGNIISDAMKKVGR K P V D K E 3 0 1 1 0 1 2 1 0 2 0 1 0 0 2 1 3 0 0 2 0 0 20 0 2040.0375 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z4F6;B7Z532;B9VPB4;B9VP19;E7EXB4;Q53SE2;E7ESH4 B7Z597 152 171 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 1.963E-13 94.09 2 1.1347 1.1573 NaN 1 Median 1.1347 1.1573 NaN 1 0 Median NaN NaN NaN 0 0 Median 15878000 4165300 11713000 15878000 4165300 11713000 0 0 0 10674 143 10965 28209;28210 44133;44134;44135 44135 3 PVTTVQPVFNLAAYHQLFVGTER DFDPLFSEETPGVEKPVTTVQPVFNLAAYH FNLAAYHQLFVGTERIRAPEIIFQPSLIGE K P V E R I 2 1 1 0 0 2 1 1 1 0 2 0 0 2 2 0 3 0 1 4 0 0 23 0 2586.3595 Q9H9F9 Q9H9F9 426 448 ACTR5 Actin-related protein 5 yes yes 3 1.5039E-09 73.672 2 2 0.66348 0.67586 2.5554 2 Median 0.66348 0.67586 2.5554 2 0 Median NaN NaN NaN 0 0 Median 36470000 15760000 20710000 28945000 15760000 13185000 7525100 0 7525100 10675 2045 10966 28211;28212;28213;28214 44136;44137;44138;44139;44140;44141;44142;44143;44144 44137 9 PVTVEPMDQLDDEEGLPEK DRCSEGSFLLTTFPRPVTVEPMDQLDDEEG EPMDQLDDEEGLPEKLVIKNQQFHKEREQP R P V E K L 0 0 0 3 0 1 4 1 0 0 2 1 1 0 3 0 1 0 0 2 0 0 19 0 2139.9882 A8K525;A0A0S2Z4Z9;Q15233;H7C367 A8K525 221 239 NONO Non-POU domain-containing octamer-binding protein yes no 2 1.1624E-22 125.61 4 1.7314 1.787 14.393 4 Median 1.7314 1.787 14.393 4 0 Median NaN NaN NaN 0 0 Median 107760000 37862000 69901000 107760000 37862000 69901000 0 0 0 10676 573 10967 28215;28216;28217;28218 44145;44146;44147;44148;44149;44150;44151;44152;44153 44151 428 9 PVVGIIYPPPEVR TEEEASSKEDSAPSKPVVGIIYPPPEVRNI SKPVVGIIYPPPEVRNIVDKTASFVARNGP K P V V R N 0 1 0 0 0 0 1 1 0 2 0 0 0 0 4 0 0 0 1 3 0 0 13 0 1434.8235 A0A024R1K8;Q15459;F8WB66 A0A024R1K8 38 50 SF3A1 Splicing factor 3A subunit 1 yes no 2 0.00047667 83.869 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2627600 0 2627600 2627600 0 2627600 0 0 0 10677 79 10968 28219;28220 44154;44155;44156 44155 3 PVVSFIAGLTAPPGR AAEFLKQHNSGPNSKPVVSFIAGLTAPPGR PVVSFIAGLTAPPGRRMGHAGAIIAGGKGG K P V G R R 2 1 0 0 0 0 0 2 0 1 1 0 0 1 3 1 1 0 0 2 0 0 15 0 1480.8402 Q6IAL5;B2R8A1;A8K4W7;P53597 Q6IAL5 268 282 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 2 1.5666E-05 110.08 2 1 2.0518 2.1045 1.5032 2 Median 2.0518 2.1045 1.5032 2 0 Median NaN NaN NaN 0 0 Median 22014000 6249500 15764000 22014000 6249500 15764000 0 0 0 10678 743 10969 28221;28222;28223 44157;44158;44159 44157 3 PVVVYR DLQAQDRCHRIGQTKPVVVYRLVTANTIDQ RCHRIGQTKPVVVYRLVTANTIDQKIVERA K P V Y R L 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 6 0 731.43301 A0A087WSW7;F6XU50;Q6I7N8;A0A0B4J1V9;Q9NRZ9;Q9NW36 A0A087WSW7 578 583 HELLS Lymphoid-specific helicase yes no 2 0.034194 80.317 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10679 400 10970 28224 44160 44160 1 PVWYSPK KEVAKHPKNPEVGLKPVWYSPKVFIEGADA KNPEVGLKPVWYSPKVFIEGADAETFSEGE K P V P K V 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 1 0 1 1 1 0 0 7 0 875.45414 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 543 549 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.026928 82.913 1 2.314 2.3642 NaN 1 Median 2.314 2.3642 NaN 1 0 Median NaN NaN NaN 0 0 Median 17295000 4382700 12913000 17295000 4382700 12913000 0 0 0 10680 1454 10971 28225 44161 44161 1 PVYHAITK FNISHTQTRLLSMAKPVYHAITKHSPKKPV RLLSMAKPVYHAITKHSPKKPVIVFVPSRK K P V T K H 1 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 1 0 1 1 0 0 8 0 927.5178 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5 O75643 1545 1552 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 0.0036725 79.451 3 1 0.89443 0.9015 17.188 4 Linear 0.90695 0.92806 7.2799 3 0 Plateau 0.76915 0.64237 NaN 1 0 Median 81096000 41592000 39504000 79563000 40713000 38850000 1533200 878770 654420 10681 1411 10972 28226;28227;28228;28229 44162;44163;44164;44165;44166;44167 44166 6 PWIGLAEALGTLMR VNAQALTSAFSPHTKPWIGLAEALGTLMRA KPWIGLAEALGTLMRAWAGSPKGTIQVITQ K P W M R A 2 1 0 0 0 0 1 2 0 1 3 0 1 0 1 0 1 1 0 0 0 0 14 0 1526.8279 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 331 344 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 4.4183E-05 87.568 2 4.5076 4.5576 NaN 1 Median 4.5076 4.5576 NaN 1 0 Median NaN NaN NaN 0 0 Median 14182000 1740000 12442000 14182000 1740000 12442000 0 0 0 10682 1382 10973 28230;28231 44168;44169;44170 44168 1052 3 PWISLPR ATRLSNIFVIGKGNKPWISLPRGKGIRLTI FVIGKGNKPWISLPRGKGIRLTIAEERDKR K P W P R G 0 1 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 0 7 0 867.49667 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;Q53HI6 B2R491 234 240 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 0.00095346 137.83 3 1.0024 1.154 5.8971 2 Median 1.0024 1.154 5.8971 2 0 Median NaN NaN NaN 0 0 Median 435290000 210580000 224710000 435290000 210580000 224710000 0 0 0 10683 824 10974 28232;28233;28234 44171;44172;44173;44174;44175;44176;44177;44178 44176 8 PYHLSTSSVFR ILPRVHRKLAIERAKPYHLSTSSVFRLVSR ERAKPYHLSTSSVFRLVSRPKPLSAVPKQV K P Y F R L 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 3 1 0 1 1 0 0 11 0 1292.6513 Q8WYP5 Q8WYP5 1018 1028 AHCTF1 Protein ELYS yes yes 3 0.0097792 37.995 2 2.7187 2.2578 NaN 1 Median NaN NaN NaN 0 0 Median 2.7187 2.2578 NaN 1 0 Median 13512000 2138400 11374000 0 0 0 13512000 2138400 11374000 10684 1945 10975 28235;28236 44179;44180 44180 2 PYIYGPTSQGER DNVFALKEYAIRLNKPYIYGPTSQGERMQI LNKPYIYGPTSQGERMQILQNFKHNPKINT K P Y E R M 0 1 0 0 0 1 1 2 0 1 0 0 0 0 2 1 1 0 2 0 0 0 12 0 1366.6517 G3V1S1;B3KTH1;B3KRG2;A8K359;P19447 G3V1S1 514 525 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 2 0.027473 36.334 1 0.96269 0.84936 NaN 1 Median NaN NaN NaN 0 0 Median 0.96269 0.84936 NaN 1 0 Median 1615700 840330 775380 0 0 0 1615700 840330 775380 10685 717 10976 28237 44181;44182 44181 2 PYLEGSGCIAGVTVPSTR GRTGGQALSTLECVKPYLEGSGCIAGVTVP EGSGCIAGVTVPSTREVMSLHEASRKELIP K P Y T R E 1 1 0 0 1 0 1 3 0 1 1 0 0 0 2 2 2 0 1 2 0 0 18 0 1862.9196 A0A075B730;A0A087X1U6 A0A075B730 1866 1883 EPPK1 yes no 2 1.2474E-06 78.763 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6652900 0 6652900 6652900 0 6652900 0 0 0 10686 397 10977 28238 44183 44183 1 PYLISGADDR EKGVNCIDYYSGGDKPYLISGADDRLVKIW SGGDKPYLISGADDRLVKIWDYQNKTCVQT K P Y D R L 1 1 0 2 0 0 0 1 0 1 1 0 0 0 1 1 0 0 1 0 0 0 10 0 1105.5404 P35606;B4E2C9 P35606 200 209 COPB2 Coatomer subunit beta yes no 2 0.0029859 78.334 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7977100 0 7977100 7977100 0 7977100 0 0 0 10687 1545 10978 28239 44184;44185 44184 2 PYLPMIIAPLFR FLGAVAMDLGIDKVKPYLPMIIAPLFRELN KVKPYLPMIIAPLFRELNSTYSEQDPLLKN K P Y F R E 1 1 0 0 0 0 0 0 0 2 2 0 1 1 3 0 0 0 1 0 0 0 12 0 1429.8156 O75691;B4DN27 O75691 2665 2676 UTP20 Small subunit processome component 20 homolog yes no 2 6.0033E-07 98.392 2 1.7109 1.7702 NaN 1 Median 1.7109 1.7702 NaN 1 0 Median NaN NaN NaN 0 0 Median 6022200 2658800 3363400 6022200 2658800 3363400 0 0 0 10688 1412 10979 28240;28241 44186;44187;44188;44189 44189 1106 4 PYQCQYCEYR PSELKKHMRIHTGEKPYQCQYCEYRSADPS HTGEKPYQCQYCEYRSADPSNLKTHVKTKH K P Y Y R S 0 1 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 0 3 0 0 0 10 0 1465.5755 Q8WWU0;Q8WXB7;E9PEP7;A0A024RC04;B7ZKJ5;P17010;P08048 Q8WWU0 262 271 ZFX;ZFY Zinc finger X-chromosomal protein;Zinc finger Y-chromosomal protein yes no 2 0.026516 44.203 2 0.97432 0.85066 16.838 2 Median NaN NaN NaN 0 0 Median 0.97432 0.85066 16.838 2 0 Median 2996300 1339800 1656500 0 0 0 2996300 1339800 1656500 10689 351 10980 28242;28243 44190;44191 44191 2 PYSDGEGGIEDENR TQRLLHLLLDDMPVKPYSDGEGGIEDENRS KPYSDGEGGIEDENRSVSGFLHFDTATKVR K P Y N R S 0 1 1 2 0 0 3 3 0 1 0 0 0 0 1 1 0 0 1 0 0 0 14 0 1536.6328 Q92621;B4DE72 Q92621 1151 1164 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.00039153 79.82 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4645400 4645400 0 4645400 4645400 0 0 0 0 10690 1950 10981 28244;28245 44192;44193;44194 44194 3 PYVEEGLHPQIIIR TSVTLLAAEFLKQVKPYVEEGLHPQIIIRA KPYVEEGLHPQIIIRAFRTATQLAVNKIKE K P Y I R A 0 1 0 0 0 1 2 1 1 3 1 0 0 0 2 0 0 0 1 1 0 0 14 0 1662.9093 Q6IBT3;Q53HV2;Q99832;B7Z7I4;F8WAM2 Q6IBT3 110 123 CCT7 T-complex protein 1 subunit eta yes no 3 0.0011151 61.235 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11917000 0 11917000 11917000 0 11917000 0 0 0 10691 1791 10982 28246 44195 44195 1 PYVLNDLEAEASLPEK MEVDIEERPKELVRKPYVLNDLEAEASLPE YVLNDLEAEASLPEKKGNTLSRDLIDYVRY K P Y E K K 2 0 1 1 0 0 3 0 0 0 3 1 0 0 2 1 0 0 1 1 0 0 16 0 1786.8989 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9P0T8 Q9Y3C1 91 106 NOP16 Nucleolar protein 16 yes no 2 1.8665E-06 94.191 1 0.70558 0.72248 NaN 1 Median 0.70558 0.72248 NaN 1 0 Median NaN NaN NaN 0 0 Median 10556000 6299000 4257200 10556000 6299000 4257200 0 0 0 10692 2135 10983 28247 44196 44196 1 PYVPLLEAEEVR LGKDSGPLSDPITGKPYVPLLEAEEVRLSQ TGKPYVPLLEAEEVRLSQSLLELWRRRGPV K P Y V R L 1 1 0 0 0 0 3 0 0 0 2 0 0 0 2 0 0 0 1 2 0 0 12 0 1413.7504 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 373 384 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.00083818 75.294 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20371000 0 20371000 16084000 0 16084000 4287400 0 4287400 10693 122 10984 28248;28249;28250;28251 44197;44198;44199;44200 44198 4 QAANFTAGGQPR GTETGILKGVNLQRKQAANFTAGGQPRREE QRKQAANFTAGGQPRREEAVSALCWGTGGE K Q A P R R 3 1 1 0 0 2 0 2 0 0 0 0 0 1 1 0 1 0 0 0 0 0 12 0 1216.5949 Q6RFH5;B4E018;F5GYL6 Q6RFH5 29 40 WDR74 WD repeat-containing protein 74 yes no 2 5.6214E-08 112.75 1 2 1.1093 0.95465 5.1298 3 Median 1.007 1.0355 NaN 1 0 Median 1.1309 0.94821 0.95644 2 0 Median 41565000 21617000 19948000 25165000 14332000 10833000 16400000 7284800 9115000 10694 1859 10985 28252;28253;28254 44201;44202;44203;44204;44205;44206;44207;44208 44201 8 QAASGLVGQENAR SHVKGLGLDESGLAKQAASGLVGQENAREA AKQAASGLVGQENAREACGVIVELIKSKKM K Q A A R E 3 1 1 0 0 2 1 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1299.6531 B5BUB1;Q9Y265 B5BUB1 34 46 RUVBL1 RuvB-like 1 yes no 2 1.4178E-23 155.33 2 2 1.1536 0.96306 18.036 4 Median 0.96562 1.0162 30.768 2 0 Median 1.1614 0.96306 0.61127 2 0 Median 85383000 44670000 40713000 66497000 35733000 30764000 18886000 8937300 9948600 10695 1076 10986 28255;28256;28257;28258 44209;44210;44211;44212;44213;44214;44215 44209 7 QAASSLQQASLK ELLARKDSETGENIRQAASSLQQASLKLFE NIRQAASSLQQASLKLFEMAYKKMASEREG R Q A L K L 3 0 0 0 0 3 0 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 12 0 1230.6568 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z4T3;A1XP52 B7Z4V2 621 632 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0019484 59.84 2 1.433 1.1486 3.5343 2 Median NaN NaN NaN 0 0 Median 1.433 1.1486 3.5343 2 0 Median 9673800 3737100 5936700 0 0 0 9673800 3737100 5936700 10696 1092 10987 28259;28260 44216;44217;44218;44219 44219 4 QACEDHVQAQILPFREDSLDSVLFLK LCSHKVSPMLYKQLRQACEDHVQAQILPFR LPFREDSLDSVLFLKKINTCWQDHCRQMIM R Q A L K K 2 1 0 3 1 3 2 0 1 1 4 1 0 2 1 2 0 0 0 2 0 0 26 1 3057.523 Q13619;A0A0A0MR50;B2RBV7;A0A087WWN2 Q13619 108 133 CUL4A Cullin-4A yes no 4 0.0031702 23.44 1 0.66353 0.55904 NaN 1 Median NaN NaN NaN 0 0 Median 0.66353 0.55904 NaN 1 0 Median 4058500 2046800 2011700 0 0 0 4058500 2046800 2011700 10697 1718 10988 28261 44220 44220 1 QADIMLPALR TLGQVAKLLEAETQRQADIMLPALRSRVTV AETQRQADIMLPALRSRVTVHQLLEAGIID R Q A L R S 2 1 0 1 0 1 0 0 0 1 2 0 1 0 1 0 0 0 0 0 0 0 10 0 1126.6169 A0A075B730;A0A087X1U6;P58107 A0A075B730 850 859 EPPK1 Epiplakin no no 2 0.01603 46.39 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13146000 0 13146000 13146000 0 13146000 0 0 0 10698 397;1622 10989 28262;28263 44221;44222 44222 289 2 QADSVEQAVYYCK STFKDKNKNDGLKPKQADSVEQAVYYCKKC PKQADSVEQAVYYCKKCTYRDPLYEIVRKH K Q A C K K 2 0 0 1 1 2 1 0 0 0 0 1 0 0 0 1 0 0 2 2 0 0 13 0 1559.6926 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 156 168 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.012493 67.334 2 1 1.6229 1.26 NaN 1 Median NaN NaN NaN 0 0 Median 1.6229 1.26 NaN 1 0 Median 3452300 1514700 1937600 0 0 0 3452300 1514700 1937600 10699 878 10990 28264;28265;28266 44223;44224;44225 44224 3 QADVNLVNAK LSPAVIVGLLKEASKQADVNLVNAKLLVKE KEASKQADVNLVNAKLLVKEAGLNVTTSHS K Q A A K L 2 0 2 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1070.572 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 385 394 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.00024273 92.491 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15388000 0 15388000 15388000 0 15388000 0 0 0 10700 1382 10991 28267 44226 44226 1 QAELVPATVNDYR DDGLSERQSVFAILRQAELVPATVNDYREK LRQAELVPATVNDYREKLLHLRKLRHDVVQ R Q A Y R E 2 1 1 1 0 1 1 0 0 0 1 0 0 0 1 0 1 0 1 2 0 0 13 0 1474.7416 O75691 O75691 681 693 UTP20 Small subunit processome component 20 homolog yes yes 2 1.3544E-06 103.08 1 1 1.7668 1.5336 NaN 1 Median NaN NaN NaN 0 0 Median 1.7668 1.5336 NaN 1 0 Median 4307300 1486400 2820900 0 0 0 4307300 1486400 2820900 10701 1412 10992 28268;28269 44227;44228 44227 2 QAEMEGAVQSIQGELSK AVDQIQLTQAQLEERQAEMEGAVQSIQGEL EMEGAVQSIQGELSKLGKAHATTSNTVIKK R Q A S K L 2 0 0 0 0 3 3 2 0 1 1 1 1 0 0 2 0 0 0 1 0 0 17 0 1803.8673 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 79 95 PTRF Polymerase I and transcript release factor yes no 2 3.2941E-05 71.879 2 1.0111 1.0512 17.037 2 Median 1.0111 1.0512 17.037 2 0 Median NaN NaN NaN 0 0 Median 28492000 10514000 17978000 28492000 10514000 17978000 0 0 0 10702 1017 10993 28270;28271 44229;44230;44231;44232 44230 803 4 QAEQLSAAGEGGDAGR FTQVTRKGGRRAKKRQAEQLSAAGEGGDAG AEQLSAAGEGGDAGRMDTEEARLAKRPVFP R Q A G R M 4 1 0 1 0 2 2 4 0 0 1 0 0 0 0 1 0 0 0 0 0 0 16 0 1515.6914 B2R823;Q9NRX1;F8WBJ6 B2R823 31 46 PNO1 RNA-binding protein PNO1 yes no 2 5.1167E-26 136.38 3 2 1.1764 1.0132 1.8988 3 Median 1.0237 1.0132 NaN 1 0 Median 1.2181 1.0291 2.3686 2 0 Median 40958000 17587000 23371000 28454000 11725000 16729000 12504000 5861700 6642600 10703 858 10994 28272;28273;28274;28275;28276 44233;44234;44235;44236;44237;44238;44239;44240 44234 8 QAEQLVFPLEK AQVLSKWDPVVLKNRQAEQLVFPLEKEEPA LKNRQAEQLVFPLEKEEPAIAPIEHVLSGW R Q A E K E 1 0 0 0 0 2 2 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 11 0 1300.7027 Q9BVJ6;B4E343 Q9BVJ6 153 163 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.010105 59.013 2 1 1.4963 1.1883 NaN 1 Median NaN NaN NaN 0 0 Median 1.4963 1.1883 NaN 1 0 Median 10111000 3842600 6268600 0 0 0 10111000 3842600 6268600 10704 2008 10995 28277;28278;28279 44241;44242;44243 44242 3 QAEVANQETKEDLPAENGETK DKKVQTKGKRGAKGKQAEVANQETKEDLPA QETKEDLPAENGETKTEESPASDEAGEKEA K Q A T K T 3 0 2 1 0 2 5 1 0 0 1 2 0 0 1 0 2 0 0 1 0 0 21 1 2300.0768 A6NL93;Q6NSG7;Q3B790;A6NEL0;P05114 A6NL93 52 72 HMGN1 Non-histone chromosomal protein HMG-14 yes no 3 0.0014658 30.652 2 0.43047 0.3657 0.23554 2 Median NaN NaN NaN 0 0 Median 0.43047 0.3657 0.23554 2 0 Median 30831000 21464000 9367600 0 0 0 30831000 21464000 9367600 10705 679 10996 28280;28281 44244;44245;44246 44245 3 QAFAPFCAEDYTESLLQLHDAEIVR LVQYWDQCFYSQEQRQAFAPFCAEDYTESL YTESLLQLHDAEIVRLKNYYEVHKELFEGV R Q A V R L 4 1 0 2 1 2 3 0 1 1 3 0 0 2 1 1 1 0 1 1 0 0 25 0 2922.3858 A0A024RC67;O43663;H0YL53 A0A024RC67 316 340 PRC1 Protein regulator of cytokinesis 1 yes no 3 0.01661 19.403 1 0.6479 0.54722 NaN 1 Median NaN NaN NaN 0 0 Median 0.6479 0.54722 NaN 1 0 Median 17932000 10142000 7789700 0 0 0 17932000 10142000 7789700 10706 353 10997 28282 44247 44247 1 QAFYFALR PRLFDLVKVKDEKIRQAFYFALRDTLVADN VKDEKIRQAFYFALRDTLVADNLDQATRVA R Q A L R D 2 1 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 8 0 1014.5287 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 706 713 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.01197 68.7 2 1.7849 1.5263 0.38178 2 Median NaN NaN NaN 0 0 Median 1.7849 1.5263 0.38178 2 0 Median 50868000 16971000 33897000 0 0 0 50868000 16971000 33897000 10707 2070 10998 28283;28284 44248;44249 44249 2 QAGAEALSQAVAR SLLIDDVIYHEAAVRQAGAEALSQAVARYQ VRQAGAEALSQAVARYQRQAAEVMGRLMEI R Q A A R Y 5 1 0 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1270.663 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1177 1189 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.004753 60.255 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5202800 5202800 0 5202800 5202800 0 0 0 0 10708 1205 10999 28285 44250 44250 1 QAGEVTYADAHK LSSRCSWQDLKDFMRQAGEVTYADAHKERT FMRQAGEVTYADAHKERTNEGVIEFRSYSD R Q A H K E 3 0 0 1 0 1 1 1 1 0 0 1 0 0 0 0 1 0 1 1 0 0 12 0 1288.6048 A8K644;Q08170;A0A0D9SEM4;Q53F45;Q59EF5;V9HVZ0;A8K588;Q13247;Q59GY3 V9HVZ0 132 143 SFRS4;SRSF4;HEL-S-91;SRSF6 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6 no no 2;3 3.6003E-29 165.18 2 4 0.90066 0.72937 38.339 6 Median 1.3128 1.4394 1.815 2 0 Median 0.85856 0.68004 6.922 4 0 Median 127090000 56463000 70624000 89615000 36216000 53398000 37472000 20247000 17225000 10709 748;755 11000 28286;28287;28288;28289;28290;28291 44251;44252;44253;44254;44255;44256;44257;44258 44253 8 QAHLTNQYMQR TKPLYVALAQRKEERQAHLTNQYMQRMASV KEERQAHLTNQYMQRMASVRAVPNPVINPY R Q A Q R M 1 1 1 0 0 3 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 0 11 0 1388.6619 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;H0YAR2;H0YB86 A0A087WTT1 350 360 PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 1 yes no 3 0.0017682 53.432 1 2.2352 2.2374 NaN 1 Median 2.2352 2.2374 NaN 1 0 Median NaN NaN NaN 0 0 Median 6859100 2375100 4484000 6859100 2375100 4484000 0 0 0 10710 273 11001 28292 44259 44259 209 1 QAIPIGLQNR VIDKCGYKEPTPIQRQAIPIGLQNRDIIGV TPIQRQAIPIGLQNRDIIGVAETGSGKTAA R Q A N R D 1 1 1 0 0 2 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1108.6353 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56;H0YI52 B3KY11 400 409 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.015402 55.531 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10711 63 11002 28293 44260 44260 1 QALEEAATADLDITEINK REMNWLDYFALGGNKQALEEAATADLDITE EEAATADLDITEINKLTAEAIQTPLKSAKT K Q A N K L 4 0 1 2 0 1 3 0 0 2 2 1 0 0 0 0 2 0 0 0 0 0 18 0 1943.9688 Q53HL2;A8K7A2;B4DXT3 Q53HL2 81 98 CDCA8 Borealin yes no 2 5.9214E-140 241.42 2 2 1.2952 1.2219 5.864 4 Median 1.0922 1.2044 9.9412 2 0 Median 1.4913 1.2219 1.4953 2 0 Median 160260000 71371000 88893000 99330000 47320000 52010000 60934000 24050000 36883000 10712 1789 11003 28294;28295;28296;28297 44261;44262;44263;44264;44265;44266;44267;44268;44269;44270;44271 44271 11 QALLAELEEQK IEQLQEKYKTELCTKQALLAELEEQKIVQA LCTKQALLAELEEQKIVQAKLKQTLTFFDE K Q A Q K I 2 0 0 0 0 2 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1270.6769 A8K1M4;Q9H081 A8K1M4 136 146 MIS12 Protein MIS12 homolog yes no 2 0.025327 41.283 1 0.84435 0.6584 NaN 1 Median NaN NaN NaN 0 0 Median 0.84435 0.6584 NaN 1 0 Median 3298200 1761400 1536800 0 0 0 3298200 1761400 1536800 10713 704 11004 28298 44272 44272 1 QALQSLTELLMAQPR ILQDQCRDPAVSVRKQALQSLTELLMAQPR QALQSLTELLMAQPRCVQIQKAWLRGVVPV K Q A P R C 2 1 0 0 0 3 1 0 0 0 4 0 1 0 1 1 1 0 0 0 0 0 15 0 1697.9134 P42695;G3V1A9;E9PKK4 P42695 598 612 NCAPD3 Condensin-2 complex subunit D3 yes no 2 4.6756E-06 93.258 2 1.0468 1.0475 2.1509 2 Median 1.0468 1.0475 2.1509 2 0 Median NaN NaN NaN 0 0 Median 18784000 9822900 8961400 18784000 9822900 8961400 0 0 0 10714 1565 11005 28299;28300 44273;44274;44275 44275 1322 3 QALSTATATVSVGK GGEPQGPPFIKYSTRQALSTATATVSVGKF RQALSTATATVSVGKFRGRPVSLWELLFSE R Q A G K F 3 0 0 0 0 1 0 1 0 0 1 1 0 0 0 2 3 0 0 2 0 0 14 0 1332.7249 A0A075B730;A0A087X1U6;P58107 A0A075B730 464 477 EPPK1 Epiplakin no no 2 0.0090957 52.693 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7908100 0 7908100 7908100 0 7908100 0 0 0 10715 397;1622 11006 28301 44276 44276 1 QALTTCDDILIK AERACCHSTGAGKLRQALTTCDDILIKQDQ KLRQALTTCDDILIKQDQTLAELQNNMVLV R Q A I K Q 1 0 0 2 1 1 0 0 0 2 2 1 0 0 0 0 2 0 0 0 0 0 12 0 1389.7174 O95235 O95235 773 784 KIF20A Kinesin-like protein KIF20A yes yes 2 5.0482E-07 104.22 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10716 1421 11007 28302;28303;28304 44277;44278;44279 44278 3 QALVGSDSAEDEK SDSEEEVERKKKCHKQALVGSDSAEDEKRK HKQALVGSDSAEDEKRKRKCQKHAPINSAQ K Q A E K R 2 0 0 2 0 1 2 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 13 0 1347.6154 O43159;E9PPY3 O43159 119 131 RRP8 Ribosomal RNA-processing protein 8 yes no 2 0.024395 45.653 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1346200 1346200 0 0 0 0 1346200 1346200 0 10717 1380 11008 28305 44280 44280 1 QANPSVLER NKKRKLTPDHNKNTKQANPSVLERDVDTQE HNKNTKQANPSVLERDVDTQEFNLEKARLE K Q A E R D 1 1 1 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 9 0 1012.5302 Q8NDD1;Q5TBH9 Q8NDD1 151 159 C1orf131 Uncharacterized protein C1orf131 yes no 2 0.0073095 62.104 1 1.2847 1.2998 NaN 1 Median 1.2847 1.2998 NaN 1 0 Median NaN NaN NaN 0 0 Median 17920000 7752200 10167000 17920000 7752200 10167000 0 0 0 10718 1925 11009 28306 44281 44281 1 QAPDNEITIK KGKFNWKGTIKAILKQAPDNEITIKKLRKK KAILKQAPDNEITIKKLRKKVLAQYYTVTD K Q A I K K 1 0 1 1 0 1 1 0 0 2 0 1 0 0 1 0 1 0 0 0 0 0 10 0 1127.5823 Q9NX58;A8K3Y5 Q9NX58 321 330 LYAR Cell growth-regulating nucleolar protein yes no 2 0.03614 40.331 2 1.1062 0.88802 5.0516 2 Median NaN NaN NaN 0 0 Median 1.1062 0.88802 5.0516 2 0 Median 35174000 15740000 19434000 0 0 0 35174000 15740000 19434000 10719 2079 11010 28307;28308 44282;44283 44283 2 QAPQPQSSLQR SVSKQETIMRHHTLRQAPQPQSSLQRGIPT HTLRQAPQPQSSLQRGIPTSARSMLSNFAQ R Q A Q R G 1 1 0 0 0 4 0 0 0 0 1 0 0 0 2 2 0 0 0 0 0 0 11 0 1238.6367 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A1B0GW07 A0A0U1RRM1 494 504 GATAD2B Transcriptional repressor p66-beta yes no 2 0.0055485 56.013 1 1 0.98847 0.91996 91.939 2 Median 0.48969 0.48021 NaN 1 0 Median 1.9953 1.7624 NaN 1 0 Median 17610000 10393000 7217400 13939000 9165400 4773400 3671600 1227500 2444100 10720 591 11011 28309;28310 44284;44285 44284 2 QAQAAVLAVLPR VDPEDDFQREMSFYRQAQAAVLAVLPRLHQ FYRQAQAAVLAVLPRLHQLKVPTKRPTDYF R Q A P R L 4 1 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 12 0 1235.735 Q6IB29;H7C2Q8;Q99848 Q6IB29 111 122 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 5.0767E-18 172.23 2 2 0.97911 0.97247 10.156 4 Median 0.93372 1.0526 0.2246 2 0 Median 1.0236 0.88435 2.4605 2 0 Median 280360000 143830000 136520000 200970000 103670000 97293000 79390000 40159000 39231000 10721 1316 11012 28311;28312;28313;28314 44286;44287;44288;44289;44290;44291;44292 44288 7 QAQEYEALLNIK HLESELAQTRAEGQRQAQEYEALLNIKVKL GQRQAQEYEALLNIKVKLEAEIATYRRLLE R Q A I K V 2 0 1 0 0 2 2 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 12 0 1418.7405 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 359 370 KRT18 Keratin, type I cytoskeletal 18 no no 2 7.9903E-48 188.91 2 2 1.1983 1.296 11.467 4 Linear 1.1327 1.2743 1.2889 2 0 Median 1.2766 1.0453 0.67153 2 0 Median 247780000 119860000 127920000 187770000 91711000 96061000 60009000 28146000 31863000 + 10722 316;1155 11013 28315;28316;28317;28318 44293;44294;44295;44296;44297;44298;44299;44300 44294 8 QAQIEVVPSASALIIK WKGLRITVKLTIQNRQAQIEVVPSASALII AQIEVVPSASALIIKALKEPPRDRKKQKNI R Q A I K A 3 0 0 0 0 2 1 0 0 3 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1665.9665 P30050;Q59FI9;D3DS95 P30050 68 83 RPL12;hCG_21173 60S ribosomal protein L12 yes no 2 1.5357E-17 130.71 2 2 1.0484 1.1041 7.0105 4 Linear 0.97118 1.1006 0.33969 2 0 Median 1.1391 0.97483 0.40203 2 0 Median 460880000 227990000 232890000 285150000 145840000 139310000 175730000 82148000 93580000 10723 1532 11014 28319;28320;28321;28322 44301;44302;44303;44304;44305;44306;44307;44308;44309 44305 9 QAQLAQTLQQQEQASQGLR QDQELAGLKQQAKEKQAQLAQTLQQQEQAS AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ K Q A L R H 3 1 0 0 0 8 1 1 0 0 3 0 0 0 0 1 1 0 0 0 0 0 19 0 2125.0876 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 532 550 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 6.0449E-15 134.68 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10724 186;1747;718 11015 28323;28324 44310;44311 44310 2 QAQQERDELADEIANSSGK IQLQEELAAAERAKRQAQQERDELADEIAN ERDELADEIANSSGKGALALEEKRRLEARI R Q A G K G 3 1 1 2 0 3 3 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 19 1 2087.972 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1698 1716 MYH9;FLJ00279 Myosin-9 yes no 3 7.8857E-07 85.087 2 2 2.2562 2.1921 12.751 4 Median 1.7672 2.0169 9.2591 2 0 Median 2.8682 2.3976 10.154 2 0 Median 63094000 26585000 36509000 50940000 23604000 27335000 12154000 2980400 9173400 10725 81 11016 28325;28326;28327;28328 44312;44313;44314;44315;44316;44317;44318 44314 7 QAQREDALELTEK IEELIAKSKQEKRERQAQREDALELTEKLD ERQAQREDALELTEKLDQDWKEIQTLLSHK R Q A E K L 2 1 0 1 0 2 3 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 13 1 1529.7686 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 208 220 NOP14 Nucleolar protein 14 yes no 3 0.013486 28.779 1 1.472 1.2325 NaN 1 Median NaN NaN NaN 0 0 Median 1.472 1.2325 NaN 1 0 Median 5670400 2233600 3436800 0 0 0 5670400 2233600 3436800 10726 790 11017 28329 44319;44320 44319 2 QASIIEYLPTLR KSVFSSRSLLYVGNRQASIIEYLPTLRNIC GNRQASIIEYLPTLRNICKTEKLKEQGKSK R Q A L R N 1 1 0 0 0 1 1 0 0 2 2 0 0 0 1 1 1 0 1 0 0 0 12 0 1402.782 Q96QE3 Q96QE3 1791 1802 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 2 0.011177 54.471 2 3.5652 3.1286 NaN 1 Median NaN NaN NaN 0 0 Median 3.5652 3.1286 NaN 1 0 Median 3522300 308710 3213600 0 0 0 3522300 308710 3213600 10727 1984 11018 28330;28331 44321;44322 44322 2 QASQGMVGQLAAR SHIRGLGLDDALEPRQASQGMVGQLAARRA PRQASQGMVGQLAARRAAGVVLEMIREGKI R Q A A R R 3 1 0 0 0 3 0 2 0 0 1 0 1 0 0 1 0 0 0 1 0 0 13 0 1315.6667 Q9Y230;B4DW30;X6R2L4 Q9Y230 41 53 RUVBL2 RuvB-like 2 yes no 2 3.2518E-06 98.048 3 0.95221 0.95398 NaN 1 Median 0.95221 0.95398 NaN 1 0 Median NaN NaN NaN 0 0 Median 23760000 15353000 8406900 23760000 15353000 8406900 0 0 0 10728 2120 11019 28332;28333;28334 44323;44324;44325 44323 1946 3 QATTIIADNIIFLSDQTK KIDYGEYMDKNNVRRQATTIIADNIIFLSD TIIADNIIFLSDQTKEKE____________ R Q A T K E 2 0 1 2 0 2 0 0 0 4 1 1 0 1 0 1 3 0 0 0 0 0 18 0 1991.0575 Q567R6;A4D1U3;Q04837 Q567R6 128 145 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 1.005E-07 89.629 2 1 0.82094 0.73723 23.253 2 Median 0.85622 0.86899 NaN 1 0 Median 0.7871 0.62546 NaN 1 0 Median 31378000 13583000 17796000 21326000 7826600 13499000 10052000 5756000 4296500 10729 666 11020 28335;28336;28337 44326;44327;44328 44326 3 QAVDSPAASFCR DVLIRLSPRHIPRHRQAVDSPAASFCRGLL RHRQAVDSPAASFCRGLLSQPGPSSLMPVL R Q A C R G 3 1 0 1 1 1 0 0 0 0 0 0 0 1 1 2 0 0 0 1 0 0 12 0 1307.5928 Q9H6R4;B4DF80;B3KPN5;A0A0C4DFX0 Q9H6R4 1024 1035 NOL6 Nucleolar protein 6 yes no 2 0.00035606 72.2 1 2 1.5824 1.3362 6.7249 3 Median 1.2143 1.2139 NaN 1 0 Median 1.6035 1.3588 2.3698 2 0 Median 26990000 10124000 16866000 16926000 6197200 10729000 10063000 3926300 6136800 10730 2038 11021 28338;28339;28340 44329;44330;44331;44332 44329 4 QAVDVSPLR REDSTRIGRAGTVRRQAVDVSPLRRVNQAI AGTVRRQAVDVSPLRRVNQAIWLLCTGARE R Q A L R R 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 9 0 983.53999 M0R0F0;Q53G25;A0A024R4Q8;P46782;M0R0R2;M0QZN2 M0R0F0 137 145 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.0018198 80.438 2 2 1.1034 1.2547 24.859 3 Plateau 1.1035 1.2547 NaN 1 0 Median 0.96594 0.81695 2.935 2 0 Median 134230000 64092000 70137000 120830000 57641000 63187000 13400000 6450800 6949300 10731 160 11022 28341;28342;28343;28344 44333;44334;44335;44336;44337 44335 5 QAVFFVGQSAR RSLNSDISYFGVGGKQAVFFVGQSARMISK VGGKQAVFFVGQSARMISKPADSQDVHELV K Q A A R M 2 1 0 0 0 2 0 1 0 0 0 0 0 2 0 1 0 0 0 2 0 0 11 0 1208.6302 A6NHR9 A6NHR9 241 251 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.01237 47.894 2 1.5666 1.33 1.3752 2 Median NaN NaN NaN 0 0 Median 1.5666 1.33 1.3752 2 0 Median 5980200 2360700 3619400 0 0 0 5980200 2360700 3619400 10732 684 11023 28345;28346 44338;44339 44338 2 QAVPIVEPQEPEIK ERRKPGAQPRKRKTKQAVPIVEPQEPEIKL KQAVPIVEPQEPEIKLKYATQPLDKTDAKN K Q A I K L 1 0 0 0 0 2 3 0 0 2 0 1 0 0 3 0 0 0 0 2 0 0 14 0 1575.8508 W5ZR30;Q9UGU0 W5ZR30 1600 1613 TCF20 Transcription factor 20 yes no 2 0.0055205 43.628 2 2.0479 1.6249 0.41683 2 Median NaN NaN NaN 0 0 Median 2.0479 1.6249 0.41683 2 0 Median 6275600 2362100 3913500 0 0 0 6275600 2362100 3913500 10733 2100 11024 28347;28348 44340;44341 44341 2 QAVSELDEEQHLEDEELQPPR PREPPQSARRKRSYKQAVSELDEEQHLEDE DEEQHLEDEELQPPRSKTPSSPCPASKVVR K Q A P R S 1 1 0 2 0 3 6 0 1 0 3 0 0 0 2 1 0 0 0 1 0 0 21 0 2490.151 Q9NQS7;B3KPD3 Q9NQS7 455 475 INCENP Inner centromere protein yes no 3 3.9594E-29 127.5 2 2 1.4772 1.4615 18.81 4 Median 1.1043 1.2565 0.46861 2 0 Median 2.0044 1.7371 3.5242 2 0 Median 336280000 143920000 192360000 221830000 109330000 112500000 114450000 34583000 79869000 10734 2059 11025 28349;28350;28351;28352 44342;44343;44344;44345;44346;44347;44348;44349;44350;44351;44352 44344 11 QAVTNPNNTFYATK FTADGERLVGMPAKRQAVTNPNNTFYATKR RQAVTNPNNTFYATKRLIGRRYDDPEVQKD R Q A T K R 2 0 3 0 0 1 0 0 0 0 0 1 0 1 1 0 3 0 1 1 0 0 14 0 1567.7631 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;D6RJI2;D6RA73 B7Z4V2 94 107 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 8.7179E-38 170.4 2 1.6071 1.7726 54.348 2 Median 1.6071 1.7726 54.348 2 0 Median NaN NaN NaN 0 0 Median 99100000 39366000 59734000 99100000 39366000 59734000 0 0 0 10735 1092 11026 28353;28354 44353;44354;44355;44356;44357;44358;44359 44353 7 QAYEDLRK VAELDKITYERDSFRQAYEDLRKQRLNEFM YERDSFRQAYEDLRKQRLNEFMAGFYIITN R Q A R K Q 1 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 8 1 1021.5193 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1122 1129 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.5644E-05 143.89 2 1 0.91346 1.088 30.473 3 Median 0.80261 0.94457 19.987 2 0 Median 1.7197 1.5077 NaN 1 0 Median 117430000 59739000 57695000 88489000 48664000 39824000 28945000 11075000 17870000 10736 2070 11027 28355;28356;28357 44360;44361;44362;44363;44364 44363 5 QCANLQNAIADAEQR RMIQRLRAEIDNVKKQCANLQNAIADAEQR QCANLQNAIADAEQRGELALKDARNKLAEL K Q C Q R G 4 1 2 1 1 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 15 0 1700.79 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76 CON__P13647 406 420 KRT5 Keratin, type II cytoskeletal 5 no no 2 8.0847E-43 160.15 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24661000 24661000 0 12732000 12732000 0 11929000 11929000 0 + 10737 1162 11028 28358;28359;28360 44365;44366;44367;44368 44365 4 QCFVVTEK SEQLEELFSQVGPVKQCFVVTEKGSKACRG SQVGPVKQCFVVTEKGSKACRGFGYVTFSM K Q C E K G 0 0 0 0 1 1 1 0 0 0 0 1 0 1 0 0 1 0 0 2 0 0 8 0 1009.4903 A0A024R753;Q9NW13;C9JE21;C9JAA9;A0A0S2Z5E5 A0A024R753 32 39 RBM28 RNA-binding protein 28 yes no 2 0.054005 42.287 1 1.0369 0.8392 NaN 1 Median NaN NaN NaN 0 0 Median 1.0369 0.8392 NaN 1 0 Median 2582400 1347600 1234800 0 0 0 2582400 1347600 1234800 10738 214 11029 28361 44369 44369 1 QCSELGICAVSVGPK HSDPPRAHAHSLVGKQCSELGICAVSVGPK QCSELGICAVSVGPKDMTAQFNNLGVLHVT K Q C P K D 1 0 0 0 2 1 1 2 0 1 1 1 0 0 1 2 0 0 0 2 0 0 15 0 1603.7698 Q00653;A0A1P8C958;D3DR86 Q00653 113 127 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2 0.010607 47.288 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10739 1674 11030 28362 44370 44370 1 QCVPFRR IRKATKYLKDVTLQKQCVPFRRYNGGVGRC LKDVTLQKQCVPFRRYNGGVGRCAQAKQWG K Q C R R Y 0 2 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 7 1 961.4916 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 56 62 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 3 0.040176 23.972 1 0.78901 0.67522 NaN 1 Median NaN NaN NaN 0 0 Median 0.78901 0.67522 NaN 1 0 Median 6044400 3351500 2692900 0 0 0 6044400 3351500 2692900 10740 106 11031 28363 44371 44371 1 QDAQSLHGDIPQK TKKEAQELSQNSAIKQDAQSLHGDIPQKQR IKQDAQSLHGDIPQKQREITLKGFRNGSFG K Q D Q K Q 1 0 0 2 0 3 0 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 13 0 1435.7056 Q9NR30 Q9NR30 462 474 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 3.8359E-163 277.22 4 4 1.1985 1.3771 15.19 8 Linear 1.1662 1.2912 6.8579 4 0 Median 1.2115 0.98638 2.9892 4 0 Median 359230000 163300000 195930000 235820000 106510000 129300000 123410000 56783000 66631000 10741 2065 11032 28364;28365;28366;28367;28368;28369;28370;28371 44372;44373;44374;44375;44376;44377;44378;44379;44380;44381;44382;44383;44384;44385;44386;44387 44373 16 QDAQVVLYR EQKREKEIKSELKMKQDAQVVLYRSYRHGD SELKMKQDAQVVLYRSYRHGDLPDIQIKHS K Q D Y R S 1 1 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 9 0 1090.5771 P78527 P78527 2765 2773 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0042933 93.992 1 2 0.63907 0.64201 39.349 3 Plateau 0.64027 0.64207 NaN 1 0 Median 0.38108 0.32611 6.0883 2 0 Median 25393000 17302000 8090300 17778000 11967000 5810200 7615100 5335000 2280100 10742 1665 11033 28372;28373;28374 44388;44389;44390;44391 44390 3 QDDQQPLDLEGVK SPEGPDPPVLTEVSKQDDQQPLDLEGVKRK SKQDDQQPLDLEGVKRKMDQGNYTSVLEFS K Q D V K R 0 0 0 3 0 3 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 13 0 1483.7155 Q03164 Q03164 1700 1712 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 5.3247E-05 116.55 1 2 2.0635 1.6534 1.8252 2 Median NaN NaN NaN 0 0 Median 2.0635 1.6534 1.8252 2 0 Median 16035000 3254400 12781000 5475300 0 5475300 10560000 3254400 7305600 10743 1680 11034 28375;28376;28377 44392;44393;44394;44395;44396 44393 5 QDEQVGLPGK ATFIEELEAVEAKEKQDEQVGLPGKGGKAK EAKEKQDEQVGLPGKGGKAKGKKTQMAEVL K Q D G K G 0 0 0 1 0 2 1 2 0 0 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1069.5404 P11388 P11388 1187 1196 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.7713E-40 191.16 2 2 1.0094 1.0132 17.662 4 Median 0.74403 0.85634 5.2625 2 0 Median 1.3458 1.1575 0.29823 2 0 Median 667090000 355900000 311190000 441830000 261410000 180410000 225270000 94489000 130780000 10744 1471 11035 28378;28379;28380;28381 44397;44398;44399;44400;44401;44402;44403;44404 44399 8 QDFLPWK EEALEKYGKDFNDIRQDFLPWKSLASIVQF GKDFNDIRQDFLPWKSLASIVQFYYMWKTT R Q D W K S 0 0 0 1 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 0 0 7 0 932.4756 A0A024R534;O94776;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2 A0A024R534 292 298 MTA2;MTA3 Metastasis-associated protein MTA2;Metastasis-associated protein MTA3 no no 2 0.041027 69.176 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10745 168;1221 11036 28382 44405 44405 1 QDGQFSVLFTK TQHAVEGDCDIHVLKQDGQFSVLFTKCDSS HVLKQDGQFSVLFTKCDSSPDSAEDVRKLC K Q D T K C 0 0 0 1 0 2 0 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1268.6401 CON__P12763 CON__P12763 121 131 yes yes 2 0.016416 54.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7138900 7138900 0 7138900 7138900 0 0 0 0 + 10746 1160 11037 28383 44406 44406 1 QDHAQQLATAAEER EQQLKEVAEKQEATRQDHAQQLATAAEERE RQDHAQQLATAAEEREASLRERDAALKQLE R Q D E R E 4 1 0 1 0 3 2 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 14 0 1566.7386 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 579 592 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 5.3857E-05 98.105 2 3 1.5 1.2522 6.9229 4 Median 1.1703 1.1633 NaN 1 0 Median 1.5362 1.2767 5.6017 3 0 Median 32979000 14321000 18658000 11849000 5749800 6099200 21130000 8571100 12559000 10747 186;1747;718 11038 28384;28385;28386;28387;28388 44407;44408;44409;44410;44411;44412;44413 44410 7 QDIAFAYQR VTIVNILTNRSNAQRQDIAFAYQRRTKKEL RSNAQRQDIAFAYQRRTKKELASALKSALS R Q D Q R R 2 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 9 0 1110.5458 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YKS4;B4DNH8;H0YMM1;H0YM50;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YKL9;H0YKV8 V9HW65 69 77 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 2 0.0060214 65.246 1 0.86749 0.86315 NaN 1 Median 0.86749 0.86315 NaN 1 0 Median NaN NaN NaN 0 0 Median 7820600 3996200 3824300 7820600 3996200 3824300 0 0 0 10748 193 11039 28389 44414 44414 1 QDILEEIK SESRQLWIWLHPTLKQDILEEIKAACQCVE WLHPTLKQDILEEIKAACQCVEPIKSAVCI K Q D I K A 0 0 0 1 0 1 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 986.52843 Q96F88;Q99575 Q96F88 337 344 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.03109 58.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4906200 4906200 0 4906200 4906200 0 0 0 0 10749 1965 11040 28390 44415 44415 1 QDLPGLSSESAR NGHTNETNTEMQRNKQDLPGLSSESAREPN RNKQDLPGLSSESAREPNAECMNQIEDNDD K Q D A R E 1 1 0 1 0 1 1 1 0 0 2 0 0 0 1 3 0 0 0 0 0 0 12 0 1258.6153 Q562F6;B7Z7S9 Q562F6 327 338 SGOL2 Shugoshin-like 2 yes no 2 0.030341 45.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10750 1795 11041 28391 44416 44416 1 QDPAHPHVVATGGK PLLELRVGPGVCRMRQDPAHPHVVATGGKE RQDPAHPHVVATGGKENALKIWDLQGSEEP R Q D G K E 2 0 0 1 0 1 0 2 2 0 0 1 0 0 2 0 1 0 0 2 0 0 14 0 1412.7161 Q6RFH5;E9PS41;B4E018 Q6RFH5 138 151 WDR74 WD repeat-containing protein 74 yes no 3 0.03178 16.139 1 1.311 1.037 NaN 1 Median NaN NaN NaN 0 0 Median 1.311 1.037 NaN 1 0 Median 3039400 1305500 1733900 0 0 0 3039400 1305500 1733900 10751 1859 11042 28392 44417 44417 1 QDQSNVQIAAAPTPEK ITKSHTVAIDNQIFKQDQSNVQIAAAPTPE DQSNVQIAAAPTPEKEMMLQNLMTTSEDGK K Q D E K E 3 0 1 1 0 3 1 0 0 1 0 1 0 0 2 1 1 0 0 1 0 0 16 0 1695.8428 Q8NG31;E9PPJ1 Q8NG31 527 542 CASC5 Protein CASC5 yes no 2 0.020716 28.361 1 1.2876 1.0519 NaN 1 Median NaN NaN NaN 0 0 Median 1.2876 1.0519 NaN 1 0 Median 2629700 1065300 1564400 0 0 0 2629700 1065300 1564400 10752 1928 11043 28393 44418 44418 1 QDQTLAELQNNMVLVK KLRQALTTCDDILIKQDQTLAELQNNMVLV DQTLAELQNNMVLVKLDLRKKAACIAEQYH K Q D V K L 1 0 2 1 0 3 1 0 0 0 3 1 1 0 0 0 1 0 0 2 0 0 16 0 1842.9509 O95235 O95235 785 800 KIF20A Kinesin-like protein KIF20A yes yes 2 0.0037564 47.991 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10753 1421 11044 28394 44419 44419 1117 1 QDSINAYNEPNSTK YEYCRLDGQTPHDERQDSINAYNEPNSTKF RQDSINAYNEPNSTKFVFMLSTRAGGLGIN R Q D T K F 1 0 3 1 0 1 1 0 0 1 0 1 0 0 1 2 1 0 1 0 0 0 14 0 1579.7114 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 539 552 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 2.4446E-197 290.28 3 2 4.9857 4.0944 21.186 3 Median 2.6629 2.9888 NaN 1 0 Median 5.3368 4.2792 6.2432 2 0 Median 103850000 24324000 79523000 79854000 19545000 60308000 23993000 4778300 19215000 10754 1391 11045 28395;28396;28397;28398;28399 44420;44421;44422;44423;44424;44425 44420 6 QDSLVINLNR KTREAEEKEKEGIVKQDSLVINLNRSNPKL EGIVKQDSLVINLNRSNPKLKDLYIRPNIA K Q D N R S 0 1 2 1 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1170.6357 Q9Y5B9 Q9Y5B9 648 657 SUPT16H FACT complex subunit SPT16 yes yes 2 4.0442E-08 117.76 2 2 0.79887 0.7938 1.8391 4 Median 0.6842 0.77948 1.9113 2 0 Median 0.92618 0.79942 0.33554 2 0 Median 359930000 209250000 150680000 282980000 168800000 114180000 76955000 40453000 36502000 10755 2148 11046 28400;28401;28402;28403 44426;44427;44428;44429;44430;44431;44432 44427 7 QDTYGDIYNFPIHAFDK QLDNAIEKELLERLKQDTYGDIYNFPIHAF TYGDIYNFPIHAFDKALEQQEAESDSSDTE K Q D D K A 1 0 1 3 0 1 0 1 1 2 0 1 0 2 1 0 1 0 2 0 0 0 17 0 2042.9374 Q9BXY0 Q9BXY0 172 188 MAK16 Protein MAK16 homolog yes yes 3 2.4827E-05 54.355 2 1.2048 0.95548 1.4138 2 Median NaN NaN NaN 0 0 Median 1.2048 0.95548 1.4138 2 0 Median 38809000 18471000 20338000 0 0 0 38809000 18471000 20338000 10756 2016 11047 28404;28405 44433;44434;44435;44436 44436 4 QDVDDEYGVSQALAR DVSEVDARHIIENAKQDVDDEYGVSQALAR QDVDDEYGVSQALARGLQSYYAVAHAVTER K Q D A R G 2 1 0 3 0 2 1 1 0 0 1 0 0 0 0 1 0 0 1 2 0 0 15 0 1664.7642 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6 A7E2E1 712 726 SMARCA4 Transcription activator BRG1 yes no 2 3.1728E-11 110.31 2 1 1.6264 1.3494 NaN 1 Median NaN NaN NaN 0 0 Median 1.6264 1.3494 NaN 1 0 Median 5690400 1817200 3873100 0 0 0 5690400 1817200 3873100 10757 695 11048 28406;28407;28408 44437;44438;44439 44438 3 QDVDNASLAR MLQREEAENTLQSFRQDVDNASLARLDLER LQSFRQDVDNASLARLDLERKVESLQEEIA R Q D A R L 2 1 1 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1087.5258 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 208 217 HEL113;VIM Vimentin yes no 2 1.2266E-08 123.35 2 1 2.0959 2.0296 50.324 2 Median 1.2994 1.4219 NaN 1 0 Median 3.3808 2.897 NaN 1 0 Median 39732000 15417000 24315000 33622000 14129000 19493000 6110300 1288600 4821700 10758 1457 11049 28409;28410;28411 44440;44441;44442;44443 44440 4 QDWGPITSISFR IIHNIKFNETLMKFRQDWGPITSISFRTDG KFRQDWGPITSISFRTDGHPVMAAGSPCGH R Q D F R T 0 1 0 1 0 1 0 1 0 2 0 0 0 1 1 2 1 1 0 0 0 0 12 0 1405.699 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 231 242 WDR36 WD repeat-containing protein 36 yes no 2 6.1296E-13 133.89 2 0.7205 0.73636 8.562 2 Median 0.7205 0.73636 8.562 2 0 Median NaN NaN NaN 0 0 Median 27538000 16334000 11203000 27538000 16334000 11203000 0 0 0 10759 486 11050 28412;28413 44444;44445;44446;44447;44448 44448 5 QDWVDGEPTEAEK DYSEAAKQYDEALNKQDWVDGEPTEAEKDF NKQDWVDGEPTEAEKDFWELASLDCYNHLA K Q D E K D 1 0 0 2 0 1 3 1 0 0 0 1 0 0 1 0 1 1 0 1 0 0 13 0 1502.6525 P78527 P78527 2979 2991 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00063328 80.737 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4021900 4021900 0 0 0 0 4021900 4021900 0 10760 1665 11051 28414;28415 44449;44450 44450 2 QEAATLAANNTQLQAR KGEVLGDVLQLETLKQEAATLAANNTQLQA EAATLAANNTQLQARVEMLETERGQQEAKL K Q E A R V 5 1 2 0 0 3 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 16 0 1698.8649 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 420 435 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.5925E-44 166.7 2 2 1.0602 0.95441 24.551 4 Median 0.76726 0.77558 4.537 2 0 Median 1.4485 1.1799 5.1956 2 0 Median 59631000 30311000 29320000 35921000 20570000 15351000 23710000 9741400 13968000 10761 186;1747;718 11052 28416;28417;28418;28419 44451;44452;44453;44454;44455;44456 44452 5 QEAEIPGANLNVEGTSTPLLR ITTYSLVAKEIPTNKQEAEIPGANLNVEGT GANLNVEGTSTPLLRIAWARIILDEAHNVK K Q E L R I 2 1 2 0 0 1 3 2 0 1 3 0 0 0 2 1 2 0 0 1 0 0 21 0 2208.1386 A0A024R0F1;Q9UNY4 A0A024R0F1 708 728 TTF2 Transcription termination factor 2 yes no 2 1.4634E-07 63.29 2 1.6393 1.3586 6.4347 2 Median NaN NaN NaN 0 0 Median 1.6393 1.3586 6.4347 2 0 Median 20050000 6853800 13196000 0 0 0 20050000 6853800 13196000 10762 44 11053 28420;28421 44457;44458 44457 2 QEAENQQLADAVLAGR YFLQQRDTLRRHVQKQEAENQQLADAVLAG EAENQQLADAVLAGRRQVEELQLQVQAQQQ K Q E G R R 4 1 1 1 0 3 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 16 0 1711.8489 U3KQ54;Q6P1K2;D3DVB3;A0A087WT04 U3KQ54 155 170 PMF1-BGLAP;PMF1;hCG_1999356 Polyamine-modulated factor 1 yes no 2 0.00033164 53.754 1 2 0.97194 0.83125 14.34 2 Median NaN NaN NaN 0 0 Median 0.97194 0.83125 14.34 2 0 Median 6200200 2965100 3235100 0 0 0 6200200 2965100 3235100 10763 1852 11054 28422;28423;28424 44459;44460;44461;44462 44462 4 QEDKDDLDVTELTNEDLLDQLVK AAVGRKATKKTDKPRQEDKDDLDVTELTNE VTELTNEDLLDQLVKYGVNPGPIVGTTRKL R Q E V K Y 0 0 1 6 0 2 3 0 0 0 5 2 0 0 0 0 2 0 0 2 0 0 23 1 2687.3025 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;H0YJH7;P42166 P42166 104 126 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 3 0.00086698 31.976 2 0.83758 0.97317 21.263 2 Median 0.83758 0.97317 21.263 2 0 Median NaN NaN NaN 0 0 Median 31015000 16188000 14827000 31015000 16188000 14827000 0 0 0 10764 334;1562 11055 28425;28426 44463;44464;44465 44465 2 QEELEAALQR AEERGELALKDARAKQEELEAALQRGKQDM DARAKQEELEAALQRGKQDMARQLREYQEL K Q E Q R G 2 1 0 0 0 2 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1185.599 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 354 363 KRT7 Keratin, type II cytoskeletal 7 no no 2 2.4126E-09 127.68 1 1.0705 1.1027 NaN 1 Median 1.0705 1.1027 NaN 1 0 Median NaN NaN NaN 0 0 Median 19753000 6899900 12854000 19753000 6899900 12854000 0 0 0 + 10765 1171;1158 11056 28427 44466 44466 1 QEELQQLEQQR ARRRQHEAEEGVRRKQEELQQLEQQRRQQE VRRKQEELQQLEQQRRQQEELLAEENQRLR K Q E Q R R 0 1 0 0 0 5 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1427.7005 Q15149;D3DWL0;H0YDN1 Q15149 2707 2717 PLEC;PLEC1 Plectin yes no 2 1.3436E-08 108.15 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10766 1754 11057 28428 44467 44467 1 QEESVDPDYWEK EEMGEEEEVEREIIKQEESVDPDYWEKLLR IIKQEESVDPDYWEKLLRHHYEQQQEDLAR K Q E E K L 0 0 0 2 0 1 3 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 12 0 1523.6416 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1298 1309 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.00022681 84.198 2 1 0.80629 0.8338 48.399 3 Median 0.80612 0.83342 0.06548 2 0 Median 2.3486 1.9272 NaN 1 0 Median 29314000 13987000 15327000 24152000 12338000 11813000 5162200 1648300 3513900 10767 515 11058 28429;28430;28431 44468;44469;44470 44468 3 QEIAEINR QVTAGRHGDDLRNTKQEIAEINRMIQRLRS DDLRNTKQEIAEINRMIQRLRSEIDHVKKQ K Q E N R M 1 1 1 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 8 0 971.50361 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4 B2R853 379 386 KRT6C;KRT6A Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 0.0097797 77.923 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13061000 13061000 0 13061000 13061000 0 0 0 0 + 10768 859;1154 11059 28432 44471 44471 1 QEIECQNQEYSLLLSIK QEQISNLEAQITDVRQEIECQNQEYSLLLS IECQNQEYSLLLSIKMRLEKEIETYHNLLE R Q E I K M 0 0 1 0 1 3 3 0 0 2 3 1 0 0 0 2 0 0 1 0 0 0 17 0 2094.0303 CON__P35527;P35527;K7EQQ3 CON__P35527 428 444 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.9886E-26 135.58 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120050000 120050000 0 81278000 81278000 0 38775000 38775000 0 + 10769 1165 11060 28433;28434;28435 44472;44473;44474;44475;44476 44475 5 QEMAFYSLPEFEEWK LEEFITPIVKVSKNKQEMAFYSLPEFEEWK QEMAFYSLPEFEEWKSSTPNHKKWKVKYYK K Q E W K S 1 0 0 0 0 1 4 0 0 0 1 1 1 2 1 1 0 1 1 0 0 0 15 0 1932.8604 P11388 P11388 585 599 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.1071E-22 145.09 2 1 0.81506 0.86045 8.0612 3 Median 0.80008 0.8825 3.5782 2 0 Median 0.94516 0.77293 NaN 1 0 Median 128570000 69641000 58926000 101950000 56746000 45208000 26612000 12895000 13717000 10770 1471 11061 28436;28437;28438 44477;44478;44479;44480;44481;44482 44480 1209 6 QEMLVQYLQDAYSFSR MSDPEESRGNDELVKQEMLVQYLQDAYSFS EMLVQYLQDAYSFSRKITEAIGIISKMMYE K Q E S R K 1 1 0 1 0 3 1 0 0 0 2 0 1 1 0 2 0 0 2 1 0 0 16 0 1976.9302 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 617 632 NCAPD2 Condensin complex subunit 1 yes no 2 4.2786E-25 144.47 2 2 1.0225 0.93562 4.2226 4 Median 0.94237 0.95784 5.3694 2 0 Median 1.0938 0.92551 3.5875 2 0 Median 46008000 23377000 22631000 32399000 16865000 15534000 13609000 6512300 7096800 10771 908 11062 28439;28440;28441;28442 44483;44484;44485;44486;44487;44488;44489;44490;44491 44484 746 9 QENEDSSDATTPVPR LFQLWLETKDQAFCKQENEDSSDATTPVPR QENEDSSDATTPVPRVRTDYVVRPSTGEEK K Q E P R V 1 1 1 2 0 1 2 0 0 0 0 0 0 0 2 2 2 0 0 1 0 0 15 0 1644.7227 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 489 503 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.00012932 80.69 2 2 1.7355 1.4948 55.046 3 Median 0.58745 0.59276 NaN 1 0 Median 1.7419 1.5362 3.8621 2 0 Median 13960000 9265200 4694600 9196100 7368600 1827500 4763700 1896600 2867100 10772 135 11063 28443;28444;28445;28446 44492;44493;44494;44495;44496;44497 44493 6 QEPENDQGVVSQAGK GSEASDTVEGVLPSKQEPENDQGVVSQAGK QEPENDQGVVSQAGKDDRESKLEGKAAQDI K Q E G K D 1 0 1 1 0 3 2 2 0 0 0 1 0 0 1 1 0 0 0 2 0 0 15 0 1584.738 Q9BTC0 Q9BTC0 217 231 DIDO1 Death-inducer obliterator 1 yes yes 2 9.1703E-05 79.82 2 1 2.231 1.8496 NaN 1 Median NaN NaN NaN 0 0 Median 2.231 1.8496 NaN 1 0 Median 7511500 6083300 1428200 5215000 5215000 0 2296400 868230 1428200 10773 2002 11064 28447;28448;28449 44498;44499;44500 44499 3 QEPENDQGVVSQAGKDDR GSEASDTVEGVLPSKQEPENDQGVVSQAGK ENDQGVVSQAGKDDRESKLEGKAAQDIKDE K Q E D R E 1 1 1 3 0 3 2 2 0 0 0 1 0 0 1 1 0 0 0 2 0 0 18 1 1970.893 Q9BTC0 Q9BTC0 217 234 DIDO1 Death-inducer obliterator 1 yes yes 3 0.0004356 38.915 1 1.5357 1.2625 NaN 1 Median NaN NaN NaN 0 0 Median 1.5357 1.2625 NaN 1 0 Median 4427500 1685200 2742300 0 0 0 4427500 1685200 2742300 10774 2002 11065 28450 44501;44502 44502 2 QEPLLIGSTK PQELNGITRALCATRQEPLLIGSTKSNMGH LCATRQEPLLIGSTKSNMGHPEPASGLAAL R Q E T K S 0 0 0 0 0 1 1 1 0 1 2 1 0 0 1 1 1 0 0 0 0 0 10 0 1084.6128 A0A0U1RQF0;P49327 A0A0U1RQF0 317 326 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00078086 81.338 2 1.7196 1.7246 5.5303 2 Median 1.7196 1.7246 5.5303 2 0 Median NaN NaN NaN 0 0 Median 16043000 6481200 9562100 16043000 6481200 9562100 0 0 0 10775 587 11066 28451;28452 44503;44504 44503 1 QEQDLLHK LLSIIRRSLRSSSSKQEQDLLHKTARIFTH LRSSSSKQEQDLLHKTARIFTHHLCRARRY K Q E H K T 0 0 0 1 0 2 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 1009.5193 Q9BQG0;I3L1L3 Q9BQG0 867 874 MYBBP1A Myb-binding protein 1A yes no 2 0.0084049 78.77 1 0.86601 0.68344 NaN 1 Median NaN NaN NaN 0 0 Median 0.86601 0.68344 NaN 1 0 Median 5377400 2655500 2721900 0 0 0 5377400 2655500 2721900 10776 1997 11067 28453 44505;44506 44506 2 QEQLTPGVVYVR KEVAQVRKRITQRKKQEQLTPGVVYVRHLP RKKQEQLTPGVVYVRHLPNLLDETQIFSYF K Q E V R H 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 1 0 1 3 0 0 12 0 1387.746 Q9BYG3;B4DSM4 Q9BYG3 39 50 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 7.6701E-13 132.88 1 2 1.3506 1.1732 9.4885 3 Median 0.99274 0.99552 NaN 1 0 Median 1.374 1.1733 0.018312 2 0 Median 25834000 11637000 14197000 17319000 7964300 9354600 8514900 3672200 4842800 10777 2019 11068 28454;28455;28456 44507;44508;44509;44510;44511;44512 44507 6 QEQQEGPVGPAPSRPALQEK DRKAIARFQQGQQGRQEQQEGPVGPAPSRP GPVGPAPSRPALQEKQPEKEEEEEAGESVE R Q E E K Q 2 1 0 0 0 4 3 2 0 0 1 1 0 0 4 1 0 0 0 1 0 0 20 1 2145.0814 Q8TDD1 Q8TDD1 612 631 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 4.4986E-09 87.49 1 2 1.2756 1.1113 8.6686 3 Median 0.83418 0.97229 NaN 1 0 Median 1.3123 1.1274 2.0438 2 0 Median 80517000 38825000 41693000 44326000 23270000 21057000 36191000 15555000 20636000 10778 1933 11069 28457;28458;28459 44513;44514;44515;44516;44517 44516 5 QESDEESRPQNANYPR SGPPENYDFPVVIVKQESDEESRPQNANYP ESDEESRPQNANYPRSILTSLLLNSSQSST K Q E P R S 1 2 2 1 0 2 3 0 0 0 0 0 0 0 2 2 0 0 1 0 0 0 16 1 1918.8405 A0A024R784;O15164;B4DYZ9 A0A024R784 708 723 TRIM24 Transcription intermediary factor 1-alpha yes no 3 5.5814E-05 77.746 2 1.3428 1.2116 3.2354 2 Median NaN NaN NaN 0 0 Median 1.3428 1.2116 3.2354 2 0 Median 2952800 1223100 1729600 0 0 0 2952800 1223100 1729600 10779 217 11070 28460;28461 44518;44519 44518 2 QESDQLVLNQHPASDK MSQLEVKEKELNKLKQESDQLVLNQHPASD ESDQLVLNQHPASDKIEAYMDTLQTQWSWI K Q E D K I 1 0 1 2 0 3 1 0 1 0 2 1 0 0 1 2 0 0 0 1 0 0 16 0 1807.8701 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 331 346 DSP;DSP variant protein Desmoplakin yes no 3 0.024415 24.793 1 0.53808 0.54221 NaN 1 Median 0.53808 0.54221 NaN 1 0 Median NaN NaN NaN 0 0 Median 13402000 7149400 6252600 13402000 7149400 6252600 0 0 0 10780 1486 11071 28462 44520 44520 1 QESGSEIHVEVK VLKKIIKEQPQPSGKQESGSEIHVEVKAQS SGKQESGSEIHVEVKAQSLVISPPAPSPRK K Q E V K A 0 0 0 0 0 1 3 1 1 1 0 1 0 0 0 2 0 0 0 2 0 0 12 0 1340.6572 P46013;Q70L73 P46013 561 572 MKI67 Antigen KI-67 no no 2;3 4.6622E-06 110.54 5 4 2.6594 2.5451 19.858 8 Median 1.8718 1.9679 14.415 4 0 Median 3.4011 2.7231 4.4461 4 0 Median 256130000 76231000 179900000 166890000 55454000 111440000 89242000 20777000 68465000 10781 1569;1864 11072 28463;28464;28465;28466;28467;28468;28469;28470;28471 44521;44522;44523;44524;44525;44526;44527;44528;44529;44530;44531;44532;44533;44534 44522 13 QEVPIIIVFR SAIGQRIVATLPYIKQEVPIIIVFRALGFV LPYIKQEVPIIIVFRALGFVSDRDILEHII K Q E F R A 0 1 0 0 0 1 1 0 0 3 0 0 0 1 1 0 0 0 0 2 0 0 10 0 1212.723 C9J2Y9;B4DHJ3;P30876;B4DR40;C9J4M6;B4DH29 C9J2Y9 258 267 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.012842 62.546 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 917050 917050 0 917050 917050 0 0 0 0 10782 975 11073 28472 44535 44535 1 QEVTCLCPSPDGLHLAVGYEDGSIR DLRKGEKILILQGLKQEVTCLCPSPDGLHL DGLHLAVGYEDGSIRIFSLLSGEGNVTFNG K Q E I R I 1 1 0 2 2 1 2 3 1 1 3 0 0 0 2 2 1 0 1 2 0 0 25 0 2772.2847 Q5TDG3;Q9UNX4 Q5TDG3 66 90 WDR3 WD repeat-containing protein 3 yes no 3 3.9552E-13 75.529 2 1.2815 1.0755 NaN 1 Median NaN NaN NaN 0 0 Median 1.2815 1.0755 NaN 1 0 Median 38556000 12159000 26397000 0 0 0 38556000 12159000 26397000 10783 1827 11074 28473;28474 44536;44537 44537 2 QEYDESGPSIVHR VLASLSTFQQMWISKQEYDESGPSIVHRKC SKQEYDESGPSIVHRKCF____________ K Q E H R K 0 1 0 1 0 1 2 1 1 1 0 0 0 0 1 2 0 0 1 1 0 0 13 0 1515.6954 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;Q6S8J3;A5A3E0;P0CG38;L0R5C4;P0CG39;Q9BYX7;P63261;B4E3A4;B4DVQ0;V9HVZ7 P63261 360 372 PS1TP5BP1;ACTB;ACTG1;POTEE;POTEF;POTEI;POTEM;POTEJ;POTEKP;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 4.4037E-24 159.09 5 4 2.0224 2.0204 7.299 8 Median 1.8686 2.2156 7.6962 4 0 Median 2.3029 2.01 4.5029 4 0 Median 4043500000 1369400000 2674200000 3462700000 1201200000 2261500000 580870000 168170000 412700000 10784 1624;1656;2186 11075 28475;28476;28477;28478;28479;28480;28481;28482;28483 44538;44539;44540;44541;44542;44543;44544;44545;44546;44547;44548;44549;44550;44551;44552;44553;44554 44541 17 QEYEQLIAK VAPGKDLTKTLNDMRQEYEQLIAKNRKDIE TLNDMRQEYEQLIAKNRKDIENQYETQITQ R Q E A K N 1 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1120.5764 CON__P35527;P35527;K7EQQ3 CON__P35527 328 336 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.2649E-07 126.52 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37755000 37755000 0 0 0 0 37755000 37755000 0 + 10785 1165 11076 28484;28485 44555;44556;44557 44555 3 QEYLNEYEAEK KIIGGMWRDLTDEEKQEYLNEYEAEKIEYN DEEKQEYLNEYEAEKIEYNESMKAYHNSPA K Q E E K I 1 0 1 0 0 1 4 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 11 0 1414.6252 B4DGM3;A0A024R1S7;Q969G3;J3QKS7;J3KT85;J3QR61;C0IMW8;J3QKX6 B4DGM3 95 105 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 0.0072035 53.028 2 1.0238 0.82988 5.3176 2 Median NaN NaN NaN 0 0 Median 1.0238 0.82988 5.3176 2 0 Median 4321800 2088200 2233600 0 0 0 4321800 2088200 2233600 10786 86 11077 28486;28487 44558;44559;44560 44560 3 QEYVDYSESAK DKHGKPTDSTPATWKQEYVDYSESAKKEVV ATWKQEYVDYSESAKKEVVAEVVKAPQVVA K Q E A K K 1 0 0 1 0 1 2 0 0 0 0 1 0 0 0 2 0 0 2 1 0 0 11 0 1317.5725 O60832 O60832 414 424 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.00023945 91.095 2 2 0.76965 0.93886 20.458 4 Linear 0.80886 0.84411 0.9282 2 0 Median 0.73525 0.5925 1.4393 2 0 Median 50378000 27374000 23004000 35975000 18681000 17294000 14404000 8693000 5710600 10787 1398 11078 28488;28489;28490;28491 44561;44562;44563;44564;44565 44562 5 QFAGYSEEVLDVR HNLLLYEARSLRLQKQFAGYSEEVLDVRFL QKQFAGYSEEVLDVRFLGPEDSHVVVASNS K Q F V R F 1 1 0 1 0 1 2 1 0 0 1 0 0 1 0 1 0 0 1 2 0 0 13 0 1511.7256 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 329 341 TBL3 Transducin beta-like protein 3 no no 2 0.0013537 58.172 2 1.1236 0.91284 5.7242 2 Median NaN NaN NaN 0 0 Median 1.1236 0.91284 5.7242 2 0 Median 25504000 12450000 13054000 0 0 0 25504000 12450000 13054000 10788 1698;436 11079 28492;28493 44566;44567;44568;44569 44566 4 QFEELTLGEFLK HKKHSSGCAFLSVKKQFEELTLGEFLKLDT VKKQFEELTLGEFLKLDTERAKNKIERALL K Q F L K L 0 0 0 0 0 1 3 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 12 0 1452.75 B7Z7B9;E7CU85;A0A0B4J1S3;O15392;A3E0Z5;H3BLT4;K7EMW2 B7Z7B9 92 103 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 2 8.5121E-13 132.32 2 2 1.2117 0.9724 4.0241 3 Median 0.93913 0.92452 NaN 1 0 Median 1.2507 0.98662 2.0532 2 0 Median 65344000 24276000 41068000 33212000 9780800 23431000 32132000 14495000 17637000 10789 498 11080 28494;28495;28496;28497 44570;44571;44572;44573;44574;44575;44576 44574 7 QFGFIVLTTSAGIMDHEEAR LKDLEKWQNNLLPSRQFGFIVLTTSAGIMD VLTTSAGIMDHEEARRKHTGGKILGFFF__ R Q F A R R 2 1 0 1 0 1 2 2 1 2 1 0 1 2 0 1 2 0 0 1 0 0 20 0 2221.0838 B2R4W8;P62244;A8K7H3 B2R4W8 98 117 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 3 2.9019E-05 41.772 1 2 1.0144 0.85182 21.75 3 Median 0.78448 0.8089 NaN 1 0 Median 1.1892 1.0138 24.621 2 0 Median 32946000 17018000 15928000 24331000 13046000 11285000 8615200 3972100 4643100 10790 831 11081;11082 28498;28499;28500 44577;44578;44579 44579 661 3 QFGIDGESFELK PSVDVLKATALPLLKQFGIDGESFELKIVR LLKQFGIDGESFELKIVRRGMPPGGGGEVV K Q F L K I 0 0 0 1 0 1 2 2 0 1 1 1 0 2 0 1 0 0 0 0 0 0 12 0 1368.6561 Q9Y2P8 Q9Y2P8 142 153 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 0.0053738 62.271 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5086300 5086300 0 0 0 0 5086300 5086300 0 10791 2125 11083 28501 44580 44580 1 QFLPFLQR IHRVADISGDTQKAKQFLPFLQRAGRSEAV GDTQKAKQFLPFLQRAGRSEAVVEYVFSGS K Q F Q R A 0 1 0 0 0 2 0 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 8 0 1047.5866 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8;H7C597 A0A140VK49 516 523 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.012091 68.422 2 1.5405 1.5672 20.346 2 Median 1.5405 1.5672 20.346 2 0 Median NaN NaN NaN 0 0 Median 12895000 4487600 8407300 12895000 4487600 8407300 0 0 0 10792 618 11084 28502;28503 44581;44582 44582 2 QFNTLIPWCLPHTGNR CSCVEAGKACDPAARQFNTLIPWCLPHTGN FNTLIPWCLPHTGNRHNHWAGLYGRLEWDG R Q F N R H 0 1 2 0 1 1 0 1 1 1 2 0 0 1 2 0 2 1 0 0 0 0 16 0 1952.9679 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0;K7ENW7 A0A024R7E3 1553 1568 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 3 0.024728 21.534 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 671500 671500 0 0 0 0 671500 671500 0 10793 222 11085 28504 44583 44583 1 QFSQYIK YMRYLMEEDEDAYKKQFSQYIKNSVTPDMM EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA K Q F I K N 0 0 0 0 0 2 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 7 0 912.47052 A2RUM7;P46777;Q59GX9;B3KTM6 A2RUM7 222 228 RPL5 60S ribosomal protein L5 yes no 2 0.020099 94.401 2 1 0.96463 1.1285 21.643 3 Plateau 0.97302 1.1242 0.53205 2 0 Median 0.94143 0.77281 NaN 1 0 Median 511380000 268710000 242660000 473800000 249490000 224300000 37583000 19221000 18361000 10794 653 11086 28505;28506;28507 44584;44585;44586;44587;44588 44584 5 QFSSSYLSR ______________________________ ______________________________ R Q F S R S 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 4 0 0 1 0 0 0 9 0 1073.5142 CON__P35527;P35527 CON__P35527 5 13 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.016145 57.708 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 10795 1165 11087 28508 44589 44589 1 QFYINVER RILVKKEELTLEGIRQFYINVEREEWKLDT LTLEGIRQFYINVEREEWKLDTLCDLYETL R Q F E R E 0 1 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 8 0 1067.54 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;B4DNH2;J3KSZ0;E7EQG2;Q14240;J3KTN0;B4DKP9;Q9NZE6;Q96B07;B4DJX6 A8K7F6 248 255 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 0.0089362 76.478 1 1 1.54 1.505 43.636 2 Median 1.7951 2.049 NaN 1 0 Median 1.3212 1.1054 NaN 1 0 Median 102740000 38789000 63956000 92468000 34092000 58375000 10277000 4696900 5580200 10796 770 11088 28509;28510 44590;44591;44592 44590 3 QGANINEIR ELTIPNNLIGCIIGRQGANINEIRQMSGAQ GCIIGRQGANINEIRQMSGAQIKIANPVEG R Q G I R Q 1 1 2 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 1013.5254 Q53SS8;Q15365 Q53SS8 298 306 PCBP1 Poly(rC)-binding protein 1 yes no 2 0.0002685 104.06 2 1.3638 1.4812 NaN 1 Median 1.3638 1.4812 NaN 1 0 Median NaN NaN NaN 0 0 Median 44652000 11358000 33294000 44652000 11358000 33294000 0 0 0 10797 1759 11089 28511;28512 44593;44594 44594 2 QGDNCDSIIR PQPSNGHFSTKIEIKQGDNCDSIIRRLMKM KIEIKQGDNCDSIIRRLMKMNRGIKDLSKV K Q G I R R 0 1 1 2 1 1 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 10 0 1176.5193 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 1043 1052 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.0093157 64.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4604300 0 4604300 4604300 0 4604300 0 0 0 10798 883 11090 28513 44595 44595 1 QGEELEVVQK DYRTAVSGIRPENLKQGEELEVVQKEVAEM PENLKQGEELEVVQKEVAEMLKGRILVGHA K Q G Q K E 0 0 0 0 0 2 3 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1157.5928 Q9GZR2;B4E331;B4DJ95 Q9GZR2 303 312 REXO4 RNA exonuclease 4 yes no 2 0.035164 40.724 1 1.4341 1.1455 NaN 1 Median NaN NaN NaN 0 0 Median 1.4341 1.1455 NaN 1 0 Median 2915600 1230500 1685100 0 0 0 2915600 1230500 1685100 10799 2021 11091 28514 44596 44596 1 QGGGGGGGSVPGIER EILSNALKRGEIIAKQGGGGGGGSVPGIER QGGGGGGGSVPGIERMGPGIDRLGGAGMER K Q G E R M 0 1 0 0 0 1 1 8 0 1 0 0 0 0 1 1 0 0 0 1 0 0 15 0 1283.6218 P52272;A0A087X0X3;Q59ES8;Q7KYM9;M0R019;B4DEG4;M0R2T0 P52272 389 403 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 2 1.1323E-07 110.38 2 1 1.6116 1.8301 27.157 3 Median 1.8487 2.0322 14.813 2 0 Median 1.5584 1.3167 NaN 1 0 Median 96559000 33877000 62682000 91835000 31685000 60150000 4723300 2191400 2531900 10800 1599 11092 28515;28516;28517 44597;44598;44599;44600 44599 4 QGGLGPMNIPLVSDPK DSHFCHLAWVNTPKKQGGLGPMNIPLVSDP GGLGPMNIPLVSDPKRTIAQDYGVLKADEG K Q G P K R 0 0 1 1 0 1 0 3 0 1 2 1 1 0 3 1 0 0 0 1 0 0 16 0 1621.8498 Q06830;A0A0A0MSI0;B2R4P2 Q06830 94 109 PRDX1 Peroxiredoxin-1 yes no 2 7.4006E-05 66.498 1 4.7797 4.7979 NaN 1 Median 4.7797 4.7979 NaN 1 0 Median NaN NaN NaN 0 0 Median 13726000 5857700 7868600 13726000 5857700 7868600 0 0 0 10801 1690 11093 28518 44601 44601 1509 1 QGGPTYYIDTNALR DDGSTLMEIDGDKGKQGGPTYYIDTNALRV KQGGPTYYIDTNALRVPRENMEAISPLKNG K Q G L R V 1 1 1 1 0 1 0 2 0 1 1 0 0 0 1 0 2 0 2 0 0 0 14 0 1567.7631 Q6FI97;Q53FS0;O96019;H7C5S0;C9JQT2 Q6FI97 63 76 BAF53A;ACTL6A Actin-like protein 6A yes no 2 0.0013992 67.519 2 0.73671 0.77713 NaN 1 Median 0.73671 0.77713 NaN 1 0 Median NaN NaN NaN 0 0 Median 34135000 14219000 19917000 34135000 14219000 19917000 0 0 0 10802 1434 11094 28519;28520 44602;44603 44603 2 QGHEAYVEMAR CPFVPQMGDEVYYFRQGHEAYVEMARKNKI YYFRQGHEAYVEMARKNKIYSINPKKQPWH R Q G A R K 2 1 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 11 0 1289.5823 Q8WWQ0 Q8WWQ0 969 979 PHIP PH-interacting protein yes yes 2 0.0027717 60.518 2 1.063 1.0597 NaN 1 Median 1.063 1.0597 NaN 1 0 Median NaN NaN NaN 0 0 Median 18700000 12344000 6355900 18700000 12344000 6355900 0 0 0 10803 1942 11095 28521;28522 44604;44605 44604 1782 1 QGNLSSQVPLK QALTEIQEFISFISKQGNLSSQVPLKRLLN FISKQGNLSSQVPLKRLLNTWTNRYPDAKM K Q G L K R 0 0 1 0 0 2 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 11 0 1169.6404 P78527 P78527 3148 3158 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00016292 94.409 2 1 0.68222 0.71606 51.957 3 Plateau 0.66832 0.69699 12.14 2 0 Median 0.35174 0.28692 NaN 1 0 Median 71449000 44606000 26843000 63604000 38738000 24865000 7845700 5868100 1977600 10804 1665 11096 28523;28524;28525 44606;44607;44608 44608 3 QGQGQLVTCSGAFK NLGPIVDMCVVDLERQGQGQLVTCSGAFKE RQGQGQLVTCSGAFKEGSLRIIRNGIGIHE R Q G F K E 1 0 0 0 1 3 0 3 0 0 1 1 0 1 0 1 1 0 0 1 0 0 14 0 1479.714 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 370 383 DDB1 DNA damage-binding protein 1 yes no 2 2.446E-10 124.42 3 2 0.91618 0.84785 23.789 4 Median 0.65639 0.6725 9.735 2 0 Median 1.2577 1.0035 0.80931 2 0 Median 100560000 53255000 47308000 59676000 34544000 25132000 40887000 18711000 22176000 10805 1770 11097 28526;28527;28528;28529;28530 44609;44610;44611;44612;44613;44614;44615;44616 44616 8 QGQIITCPAVCNFQTGEYVVVHDNK YKVSDQKPLGSWSVKQGQIITCPAVCNFQT CNFQTGEYVVVHDNKVLRIWNNEDVNLDKV K Q G N K V 1 0 2 1 2 3 1 2 1 2 0 1 0 1 1 0 2 0 1 4 0 0 25 0 2876.3585 Q9H8H0;J3QLQ6 Q9H8H0 61 85 NOL11 Nucleolar protein 11 yes no 3 9.483E-13 72.899 1 2 1.2491 1.0099 5.5285 2 Median NaN NaN NaN 0 0 Median 1.2491 1.0099 5.5285 2 0 Median 57189000 29882000 27307000 10349000 10349000 0 46841000 19534000 27307000 10806 2042 11098 28531;28532;28533 44617;44618;44619;44620;44621;44622 44622 6 QGSEHTYESCGDGVPAPQK GASRHKSGDDPPARRQGSEHTYESCGDGVP HTYESCGDGVPAPQKVLFPTERLSLRWERV R Q G Q K V 1 0 0 1 1 2 2 3 1 0 0 1 0 0 2 2 1 0 1 1 0 0 19 0 2045.8749 A0A024R8V6;Q9P275;A0A075B784;E9PEW0;K7ELR5;Q8IXW9;K7EQS0;K7EPT1 A0A024R8V6 84 102 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 0.018295 13.037 1 1.2538 1.0325 NaN 1 Median NaN NaN NaN 0 0 Median 1.2538 1.0325 NaN 1 0 Median 1843900 729240 1114700 0 0 0 1843900 729240 1114700 10807 260 11099 28534 44623 44623 1 QGSITSPQANEQSVTPQR SSSPHPKVKSGTPPRQGSITSPQANEQSVT ITSPQANEQSVTPQRRSCFESSPDPELKSR R Q G Q R R 1 1 1 0 0 4 1 1 0 1 0 0 0 0 2 3 2 0 0 1 0 0 18 0 1926.9395 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8 A0A140VK53 852 869 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 2 0.00067517 42.209 2 1.0812 1.0974 14.305 2 Median 1.0812 1.0974 14.305 2 0 Median NaN NaN NaN 0 0 Median 15618000 7450300 8167300 15618000 7450300 8167300 0 0 0 10808 619 11100 28535;28536 44624;44625 44625 2 QGTGLQGQAVFK YKAPLQGDHNHLFIRQGTGLQGQAVFKTKL FIRQGTGLQGQAVFKTKLTFRPHSTDSATH R Q G F K T 1 0 0 0 0 3 0 3 0 0 1 1 0 1 0 0 1 0 0 1 0 0 12 0 1232.6513 B4DNM0;Q8WVC0 B4DNM0 453 464 LEO1 RNA polymerase-associated protein LEO1 yes no 2 0.005312 51.268 1 2 1.8088 1.4872 19.988 3 Median 1.8088 1.8516 NaN 1 0 Median 1.7122 1.3592 12.72 2 0 Median 23836000 9224100 14612000 17495000 6770900 10724000 6340300 2453200 3887100 10809 1012 11101 28537;28538;28539 44626;44627;44628 44627 3 QGTPLIAFSLLPHEQK LHVSEVPVSVVECFRQGTPLIAFSLLPHEQ GTPLIAFSLLPHEQKMSVLNMVVRRDPGNT R Q G Q K M 1 0 0 0 0 2 1 1 1 1 3 1 0 1 2 1 1 0 0 0 0 0 16 0 1777.9727 Q2NL82;I3L4E8 Q2NL82 575 590 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 3 0.0075921 26.412 2 0.61109 0.49068 3.9737 2 Median NaN NaN NaN 0 0 Median 0.61109 0.49068 3.9737 2 0 Median 12683000 8214700 4468700 0 0 0 12683000 8214700 4468700 10810 1776 11102 28540;28541 44629;44630;44631;44632 44630 4 QGTQYTFSSIER GTTTTRSFDFEIETKQGTQYTFSSIEREEY ETKQGTQYTFSSIEREEYGKLFDFVNAKKL K Q G E R E 0 1 0 0 0 2 1 1 0 1 0 0 0 1 0 2 2 0 1 0 0 0 12 0 1415.6681 A0A024R4Z6;Q08945 A0A024R4Z6 397 408 SSRP1 FACT complex subunit SSRP1 yes no 2 0.00021096 84.479 2 2 0.76008 0.72715 4.3128 4 Median 0.66856 0.75743 1.2492 2 0 Median 0.85825 0.70366 0.12478 2 0 Median 156200000 92280000 63925000 126580000 77146000 49430000 29629000 15134000 14495000 10811 167 11103 28542;28543;28544;28545 44633;44634;44635;44636 44634 4 QGTQYTFSSIEREEYGK GTTTTRSFDFEIETKQGTQYTFSSIEREEY TQYTFSSIEREEYGKLFDFVNAKKLNIKNR K Q G G K L 0 1 0 0 0 2 3 2 0 1 0 1 0 1 0 2 2 0 2 0 0 0 17 1 2021.933 A0A024R4Z6;Q08945 A0A024R4Z6 397 413 SSRP1 FACT complex subunit SSRP1 yes no 3 3.7729E-18 125.98 2 2 0.95379 0.81539 5.4555 4 Linear 0.64799 0.74258 3.8004 2 0 Median 0.92205 0.80061 4.2702 2 0 Median 145740000 80960000 64775000 57028000 32799000 24229000 88707000 48161000 40546000 10812 167 11104 28546;28547;28548;28549 44637;44638;44639;44640;44641;44642;44643;44644 44644 8 QGVDADINGLR LDDFRIKFEMEQNLRQGVDADINGLRQVLD QNLRQGVDADINGLRQVLDNLTMEKSDLEM R Q G L R Q 1 1 1 2 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1156.5836 CON__P35527;P35527;K7EQQ3 CON__P35527 251 261 KRT9 Keratin, type I cytoskeletal 9 yes no 2 7.6592E-12 123.86 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 223990000 223990000 0 177160000 177160000 0 46824000 46824000 0 + 10813 1165 11105 28550;28551;28552;28553 44645;44646;44647;44648;44649 44645 5 QGVQVQVSTSNISSLEGAR IRTGYQAKQVRRWRRQGVQVQVSTSNISSL VQVSTSNISSLEGARGLIAEAAQLGPVGGV R Q G A R G 1 1 1 0 0 3 1 2 0 1 1 0 0 0 0 4 1 0 0 3 0 0 19 0 1959.0021 A0A0U1RQF0;P49327 A0A0U1RQF0 1933 1951 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 7.6892E-10 123.02 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10814 587 11106 28554 44650 44650 1 QGYVIYR PTRPDKARRLGYKAKQGYVIYRIRVRRGGR RRLGYKAKQGYVIYRIRVRRGGRKRPVPKG K Q G Y R I 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 2 1 0 0 7 0 897.47085 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7ENU7;E7EX53;B4DEN1 A0A024R2Q4 57 63 RPL15 Ribosomal protein L15;60S ribosomal protein L15 no no 2 0.018449 96.048 2 0.83219 0.9555 0.86093 2 Median 0.83219 0.9555 0.86093 2 0 Median NaN NaN NaN 0 0 Median 335670000 185950000 149720000 335670000 185950000 149720000 0 0 0 10815 121 11107 28555;28556 44651;44652 44652 2 QGYVLSSIEGR SLKYQTRCIRAFPNKQGYVLSSIEGRVAVE FPNKQGYVLSSIEGRVAVEYLDPSPEVQKK K Q G G R V 0 1 0 0 0 1 1 2 0 1 1 0 0 0 0 2 0 0 1 1 0 0 11 0 1207.6197 J3QT28;A0A140VJF3;O43684;B4DDM6 J3QT28 192 202 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.0040353 58.743 1 2 1.2181 1.1781 8.7425 3 Median 1.1981 1.2 NaN 1 0 Median 1.2746 1.0977 9.9982 2 0 Median 26616000 12346000 14271000 18684000 8923100 9761200 7932000 3422700 4509300 10816 600 11108 28557;28558;28559 44653;44654;44655;44656;44657 44657 5 QHFPATPLLDYALEVEK NNPDMRVQILKDYVRQHFPATPLLDYALEV FPATPLLDYALEVEKITTSKKPNLILNVDG R Q H E K I 2 0 0 1 0 1 2 0 1 0 3 1 0 1 2 0 1 0 1 1 0 0 17 0 1970.0149 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 986 1002 ACLY;ACLY variant protein ATP-citrate synthase yes no 3 0.007941 38.227 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3927200 0 3927200 3927200 0 3927200 0 0 0 10817 89 11109 28560 44658 44658 1 QIAEEDFYEK DDESGAGELTREELRQIAEEDFYEKLAASI REELRQIAEEDFYEKLAASIAPEIYGHEDV R Q I E K L 1 0 0 1 0 1 3 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 10 0 1270.5717 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993 B3KUD7 219 228 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.040524 38.567 2 0.74701 0.62332 2.8172 2 Median NaN NaN NaN 0 0 Median 0.74701 0.62332 2.8172 2 0 Median 3194800 1676300 1518500 0 0 0 3194800 1676300 1518500 10818 560 11110 28561;28562 44659;44660 44660 2 QIALGTSK LMKLEVQATDREENKQIALGTSKLNYLDPR TDREENKQIALGTSKLNYLDPRITVAWCKK K Q I S K L 1 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 816.47052 P11387;B9EG90;Q9BVT2 P11387 713 720 TOP1 DNA topoisomerase 1 yes no 2 0.011794 69.105 1 1.0564 1.1403 NaN 1 Median 1.0564 1.1403 NaN 1 0 Median NaN NaN NaN 0 0 Median 34708000 17864000 16844000 34708000 17864000 16844000 0 0 0 10819 1470 11111 28563 44661 44661 1 QICPSLAGFQFTQWDSETHNESVSALVDK MTDLKAPLQQCAEDRQICPSLAGFQFTQWD DSETHNESVSALVDKFKKNDQVFDINAEVD R Q I D K F 2 0 1 2 1 3 2 1 1 1 2 1 0 2 1 4 2 1 0 2 0 0 29 0 3293.5299 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 314 342 NCAPH Condensin complex subunit 2 yes no 3 3.4508E-23 96.748 1 2 1.5509 1.265 27.955 3 Median 0.79701 0.79629 NaN 1 0 Median 1.5723 1.2907 2.8377 2 0 Median 79372000 32696000 46676000 15194000 7648100 7546000 64178000 25048000 39130000 10820 740 11112 28564;28565;28566 44662;44663;44664;44665;44666;44667 44667 6 QIDAPGDPFPLNPR NRLLHIVGYGDFQMKQIDAPGDPFPLNPRG KQIDAPGDPFPLNPRGIKPQKDPDMAMEIC K Q I P R G 1 1 1 2 0 1 0 1 0 1 1 0 0 1 4 0 0 0 0 0 0 0 14 0 1535.7732 Q2NL82;I3L1Q5 Q2NL82 301 314 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 2 0.0017919 51.162 1 0.69617 0.70233 NaN 1 Median 0.69617 0.70233 NaN 1 0 Median NaN NaN NaN 0 0 Median 7762300 4155500 3606800 7762300 4155500 3606800 0 0 0 10821 1776 11113 28567 44668;44669 44668 2 QIDQFLVVAR MEMKVWDPDNPLTDRQIDQFLVVARAVGTF PLTDRQIDQFLVVARAVGTFARALDCSSSI R Q I A R A 1 1 0 1 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 10 0 1187.6663 A0A024R534;O94776;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8;E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q86TR6 A0A024R534 189 198 MTA2;MTA3;tmp_locus_6;MTA1 Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 no no 2 2.7877E-10 136.8 2 2 1.3934 1.3229 22.193 4 Median 0.98717 1.0988 1.7785 2 0 Median 1.9514 1.6108 3.3854 2 0 Median 144950000 63956000 80997000 125070000 57009000 68057000 19887000 6946900 12940000 10822 168;1223;1221 11114 28568;28569;28570;28571 44670;44671;44672;44673;44674;44675;44676;44677;44678 44673 9 QIEIQFAQGDRK EDALHNLDRKWICGRQIEIQFAQGDRKTPN CGRQIEIQFAQGDRKTPNQMKAKEGRNVYS R Q I R K T 1 1 0 1 0 3 1 1 0 2 0 1 0 1 0 0 0 0 0 0 0 0 12 1 1431.747 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q8WXF0 Q5JRI1 80 91 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 yes no 3 5.1873E-05 80.17 1 0.99445 1.1479 NaN 1 Median 0.99445 1.1479 NaN 1 0 Median NaN NaN NaN 0 0 Median 30205000 14364000 15841000 30205000 14364000 15841000 0 0 0 10823 574 11115 28572 44679 44679 1 QIESLETEMEFR EVRGQVSESEDSITKQIESLETEMEFRSAQ ITKQIESLETEMEFRSAQIADLQQKLLDAE K Q I F R S 0 1 0 0 0 1 4 0 0 1 1 0 1 1 0 1 1 0 0 0 0 0 12 0 1510.6974 Q59HG1;O95239;B3KNC0 Q59HG1 822 833 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 8.3525E-05 91.549 1 1.2209 1.2247 NaN 1 Median 1.2209 1.2247 NaN 1 0 Median NaN NaN NaN 0 0 Median 17585000 8029200 9555700 17585000 8029200 9555700 0 0 0 10824 1803 11116 28573 44680 44680 1669 1 QIFNGTFVK VSPKVRKVLQLLRLRQIFNGTFVKLNKASI QLLRLRQIFNGTFVKLNKASINMLRIVEPY R Q I V K L 0 0 1 0 0 1 0 1 0 1 0 1 0 2 0 0 1 0 0 1 0 0 9 0 1052.5655 A0A024R814;P18124;A8MUD9;C9JIJ5;C9JZ88 A0A024R814 127 135 RPL7 60S ribosomal protein L7 yes no 2 0.027878 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65351000 65351000 0 65351000 65351000 0 0 0 0 10825 240 11117 28574 44681 44681 1 QIGASSRPPPNR DQLRLERLQIDEQLRQIGASSRPPPNRTDK QLRQIGASSRPPPNRTDKEKSYVTDDGQGM R Q I N R T 1 2 1 0 0 1 0 1 0 1 0 0 0 0 3 2 0 0 0 0 0 0 12 1 1278.6793 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;B4DFH8;B4DZ17 X5DQX7 443 454 FMR1 Fragile X mental retardation protein 1 yes no 3 0.0072419 43.382 2 1.4363 1.4841 11.537 2 Median 1.4363 1.4841 11.537 2 0 Median NaN NaN NaN 0 0 Median 21422000 7210500 14212000 21422000 7210500 14212000 0 0 0 10826 1689 11118 28575;28576 44682;44683 44683 2 QIGNVAALPGIVHR ACRGGGVGGFLPAMKQIGNVAALPGIVHRS KQIGNVAALPGIVHRSIGLPDVHSGYGFAI K Q I H R S 2 1 1 0 0 1 0 2 1 2 1 0 0 0 1 0 0 0 0 2 0 0 14 0 1443.831 Q9Y3I0;B4DNG5;B4DXF1 Q9Y3I0 68 81 RTCB tRNA-splicing ligase RtcB homolog yes no 3 2.5867E-05 81.918 2 2 1.2508 1.2294 6.9623 4 Median 1.2007 1.2677 0.053355 2 0 Median 1.3467 1.1424 6.102 2 0 Median 56470000 27891000 28579000 46214000 23244000 22970000 10256000 4646600 5609500 10827 2137 11119 28577;28578;28579;28580 44684;44685;44686;44687 44685 4 QIIQQNPSLLPALLQQIGR PLEFLRNQPQFQQMRQIIQQNPSLLPALLQ QNPSLLPALLQQIGRENPQLLQQISQHQEH R Q I G R E 1 1 1 0 0 5 0 1 0 3 4 0 0 0 2 1 0 0 0 0 0 0 19 0 2129.2321 P54727;B4DEA3;Q53F10;B7Z4W4;B7ZA74 P54727 290 308 RAD23B UV excision repair protein RAD23 homolog B yes no 2 6.1056E-12 103.88 3 0.61654 0.61447 NaN 1 Median 0.61654 0.61447 NaN 1 0 Median NaN NaN NaN 0 0 Median 13883000 10412000 3471000 13883000 10412000 3471000 0 0 0 10828 1610 11120 28581;28582;28583 44688;44689;44690;44691;44692 44691 5 QIIVTR VAALIRSLPVEEQPKQIIVTRKGMLDPLEV SLPVEEQPKQIIVTRKGMLDPLEVHLLDFP K Q I T R K 0 1 0 0 0 1 0 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 6 0 728.45447 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1860 1865 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.033545 80.555 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10829 1854 11121 28584 44693 44693 1 QILDPAAR AGDGKSIRTFKESPKQILDPAARVTGMKKW TFKESPKQILDPAARVTGMKKWPRTPKEEA K Q I A R V 2 1 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 8 0 882.49232 P46013 P46013 1074 1081 MKI67 Antigen KI-67 yes yes 2 0.039022 47.749 1 1.7539 2.0213 NaN 1 Median 1.7539 2.0213 NaN 1 0 Median NaN NaN NaN 0 0 Median 225460000 77577000 147880000 225460000 77577000 147880000 0 0 0 10830 1569 11122 28585 44694 44694 1 QILDPAASVTGSR TGDSKSIKAFKESPKQILDPAASVTGSRRQ PKQILDPAASVTGSRRQLRTRKEKARALED K Q I S R R 2 1 0 1 0 1 0 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1313.6939 P46013 P46013 2531 2543 MKI67 Antigen KI-67 yes yes 2 1.4005E-06 110.93 2 2 2.4118 2.4152 19.64 4 Median 1.7704 2.0386 0.038082 2 0 Median 3.3051 2.8646 0.20072 2 0 Median 462830000 150090000 312740000 353530000 125290000 228240000 109300000 24799000 84505000 10831 1569 11123 28586;28587;28588;28589 44695;44696;44697;44698;44699;44700;44701 44697 7 QILDSAASLTGSK TGDGKSMKAFMESPKQILDSAASLTGSKRQ PKQILDSAASLTGSKRQLRTPKGKSEVPED K Q I S K R 2 0 0 1 0 1 0 1 0 1 2 1 0 0 0 3 1 0 0 0 0 0 13 0 1289.6827 P46013 P46013 1682 1694 MKI67 Antigen KI-67 yes yes 2 0.00055246 61.435 2 3.551 2.9548 0.2681 2 Median NaN NaN NaN 0 0 Median 3.551 2.9548 0.2681 2 0 Median 88608000 19285000 69323000 0 0 0 88608000 19285000 69323000 10832 1569 11124 28590;28591 44702;44703;44704;44705 44703 4 QILIACSPVSSVR VSEHHDTILRVTRRRQILIACSPVSSVRKK RRQILIACSPVSSVRKKPKVTPTKESYTEE R Q I V R K 1 1 0 0 1 1 0 0 0 2 1 0 0 0 1 3 0 0 0 2 0 0 13 0 1428.7759 Q5QJE6;J3KP30;B7Z854;E9PRB3 Q5QJE6 111 123 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 0.00019093 70.942 2 1.5849 1.3507 3.8333 2 Median NaN NaN NaN 0 0 Median 1.5849 1.3507 3.8333 2 0 Median 11029000 3941900 7086700 0 0 0 11029000 3941900 7086700 10833 1813 11125 28592;28593 44706;44707 44707 2 QIMENAEINNIIK PLRGKILNVREASHKQIMENAEINNIIKIV HKQIMENAEINNIIKIVGLQYKKNYEDEDS K Q I I K I 1 0 3 0 0 1 2 0 0 4 0 1 1 0 0 0 0 0 0 0 0 0 13 0 1528.7919 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 500 512 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 7.4188E-10 123.75 2 4 0.97742 1.1277 23.551 6 Median 0.97742 1.1277 2.795 2 0 Median 1.1735 0.97445 28.823 4 0 Median 663580000 325510000 338060000 441590000 220260000 221330000 221980000 105250000 116730000 10834 1471;1679 11126;11127 28594;28595;28596;28597;28598;28599 44708;44709;44710;44711;44712;44713;44714;44715;44716;44717;44718;44719 44711 1210 12 QINDIQLSR AKSGEVLVNVKEHSRQINDIQLSRDMTMFV VKEHSRQINDIQLSRDMTMFVTASKDNTAK R Q I S R D 0 1 1 1 0 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1085.5829 Q5U0F4;Q53HU7;Q13347 Q5U0F4 190 198 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 2 0.046803 47.603 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10835 1711 11128 28600 44720 44720 1 QINLSNIR IIVRGQPRGGPPPERQINLSNIRAGNLARR GGPPPERQINLSNIRAGNLARRAAATQPDA R Q I I R A 0 1 2 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 8 0 956.54033 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8 A0A140VK49 48 55 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.012954 66.429 1 0.99803 1.0276 NaN 1 Median 0.99803 1.0276 NaN 1 0 Median NaN NaN NaN 0 0 Median 14136000 6212000 7923700 14136000 6212000 7923700 0 0 0 10836 618 11129 28601 44721 44721 1 QINVSTDDSEVK QAEVLAEFERRKRARQINVSTDDSEVKACL RARQINVSTDDSEVKACLRALGEPITLFGE R Q I V K A 0 0 1 2 0 1 1 0 0 1 0 1 0 0 0 2 1 0 0 2 0 0 12 0 1333.6361 Q6IAP9;Q5T1M7;Q59EL4;O43172;B2R7V4 Q6IAP9 97 108 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 2 0.00023251 85.355 1 1.0195 1.0262 NaN 1 Median 1.0195 1.0262 NaN 1 0 Median NaN NaN NaN 0 0 Median 7145700 2850400 4295400 7145700 2850400 4295400 0 0 0 10837 1381 11130 28602 44722;44723;44724 44724 3 QINWTVLYR NAKCESAFLSKRNPRQINWTVLYRRKHKKG SKRNPRQINWTVLYRRKHKKGQSEEIQKKR R Q I Y R R 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 1 1 0 0 9 0 1191.64 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 48 56 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 2 0.00013773 102 1 2 1.3688 1.1927 0.84241 2 Median NaN NaN NaN 0 0 Median 1.3688 1.1927 0.84241 2 0 Median 653150000 213790000 439360000 151770000 0 151770000 501380000 213790000 287600000 10838 1140 11131 28603;28604;28605 44725;44726;44727;44728;44729 44725 5 QIPFHDVR DSITVAFENNWQPDRQIPFHDVRFPPPVGY NNWQPDRQIPFHDVRFPPPVGYNKDINESD R Q I V R F 0 1 0 1 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 8 0 1010.5298 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29 X5DQX7 41 48 FMR1 Fragile X mental retardation protein 1 yes no 3 0.02328 35.872 2 1.2614 1.3533 4.9493 2 Median 1.2614 1.3533 4.9493 2 0 Median NaN NaN NaN 0 0 Median 43582000 18053000 25529000 43582000 18053000 25529000 0 0 0 10839 1689 11132 28606;28607 44730;44731 44730 2 QIPLQSLDLEFGSGFQPR RSLQTLALETEWELRQIPLQSLDLEFGSGF LQSLDLEFGSGFQPRVLPTQPNPVDASRAQ R Q I P R V 0 1 0 1 0 3 1 2 0 1 3 0 0 2 2 2 0 0 0 0 0 0 18 0 2031.0425 Q8N766 Q8N766 258 275 EMC1 ER membrane protein complex subunit 1 yes yes 2 2.3681E-05 70.412 2 0.79541 0.81326 NaN 1 Median 0.79541 0.81326 NaN 1 0 Median NaN NaN NaN 0 0 Median 6981600 4398300 2583300 6981600 4398300 2583300 0 0 0 10840 1913 11133 28608;28609 44732;44733;44734 44734 3 QISDGEREELNLTANR LLEMIHSIQNSQDMRQISDGEREELNLTAN ISDGEREELNLTANRLMGRTLTVEVSVETI R Q I N R L 1 2 2 1 0 1 3 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 16 1 1843.9024 B3KN59;B3KM36;O95816 B3KN59 71 86 BAG2 BAG family molecular chaperone regulator 2 yes no 3 0.00017458 51.591 1 2 0.93556 0.84587 23.84 3 Median 1.1016 1.2351 NaN 1 0 Median 0.91693 0.82012 4.3731 2 0 Median 34598000 15023000 19575000 27299000 11145000 16154000 7299400 3878300 3421200 10841 900 11134 28610;28611;28612 44735;44736;44737;44738;44739 44736 5 QISNLQQSISDAEQR RVIQRLRSEIDNVKKQISNLQQSISDAEQR QISNLQQSISDAEQRGENALKDAKNKLNDL K Q I Q R G 1 1 1 1 0 4 1 0 0 2 1 0 0 0 0 3 0 0 0 0 0 0 15 0 1715.8438 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 418 432 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.5599E-152 247.13 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 963550000 963550000 0 776870000 776870000 0 186680000 186680000 0 + 10842 1308;1309 11135 28613;28614;28615;28616;28617;28618 44740;44741;44742;44743;44744;44745;44746;44747;44748;44749 44743 10 QISNLQQSISDAEQRGENALK RVIQRLRSEIDNVKKQISNLQQSISDAEQR QSISDAEQRGENALKDAKNKLNDLEDALQQ K Q I L K D 2 1 2 1 0 4 2 1 0 2 2 1 0 0 0 3 0 0 0 0 0 0 21 1 2328.167 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 418 438 KRT1 Keratin, type II cytoskeletal 1 no no 3 0.021943 30.21 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18190000 18190000 0 0 0 0 18190000 18190000 0 + 10843 1308;1309 11136 28619 44750 44750 1 QISQAYEVLSDAK KYHPDKNPNEGEKFKQISQAYEVLSDAKKR FKQISQAYEVLSDAKKRELYDKGGEQAIKE K Q I A K K 2 0 0 1 0 2 1 0 0 1 1 1 0 0 0 2 0 0 1 1 0 0 13 0 1450.7304 P31689 P31689 47 59 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2 9.3421E-24 158.02 2 2 0.96233 0.86031 37.046 4 Median 1.1718 1.1829 6.7476 2 0 Median 0.77453 0.62697 6.4581 2 0 Median 61817000 30216000 31602000 46089000 21028000 25061000 15728000 9187000 6541000 10844 1535 11137 28620;28621;28622;28623 44751;44752;44753;44754;44755;44756;44757 44754 7 QISRPSAAGINLMIGSTR SQLDPVNERMLNMIRQISRPSAAGINLMIG RPSAAGINLMIGSTRYGDGPRPPKMARYDN R Q I T R Y 2 2 1 0 0 1 0 2 0 3 1 0 1 0 1 3 1 0 0 0 0 0 18 1 1871.0047 Q08211;B3KU66 Q08211 1137 1154 DHX9 ATP-dependent RNA helicase A yes no 3 3.2682E-06 77.698 1 1.6883 1.9223 NaN 1 Median 1.6883 1.9223 NaN 1 0 Median NaN NaN NaN 0 0 Median 38956000 15184000 23771000 38956000 15184000 23771000 0 0 0 10845 1691 11138 28624 44758 44758 1519 1 QISVGFIGYPNVGK IQLLRQFGKLHTDKKQISVGFIGYPNVGKS KQISVGFIGYPNVGKSSVINTLRSKKVCNV K Q I G K S 0 0 1 0 0 1 0 3 0 2 0 1 0 1 1 1 0 0 1 2 0 0 14 0 1477.7929 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 310 323 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.00023379 83.862 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13062000 0 13062000 6365000 0 6365000 6696900 0 6696900 10846 1721 11139 28625;28626;28627;28628 44759;44760;44761;44762 44761 4 QITQSALLAEAR YDVLRGIFTSEIGTKQITQSALLAEARSDY GTKQITQSALLAEARSDYSEAAKQYDEALN K Q I A R S 3 1 0 0 0 2 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 12 0 1299.7147 P78527 P78527 2951 2962 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.0673E-05 103.08 1 2 0.35328 0.29838 4.7235 2 Median NaN NaN NaN 0 0 Median 0.35328 0.29838 4.7235 2 0 Median 21352000 11330000 10022000 6068400 0 6068400 15284000 11330000 3953900 10847 1665 11140 28629;28630;28631 44763;44764;44765;44766;44767 44767 5 QITVNDLPVGR SFRGLFIIDDKGILRQITVNDLPVGRSVDE GILRQITVNDLPVGRSVDETLRLVQAFQFT R Q I G R S 0 1 1 1 0 1 0 1 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1210.667 Q06830;A0A0A0MSI0;B2R4P2;A0A0A0MRQ5 Q06830 141 151 PRDX1 Peroxiredoxin-1 no no 2 0.00056923 78.655 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38890000 0 38890000 38890000 0 38890000 0 0 0 10848 1690 11141 28632;28633 44768;44769 44769 2 QIVGTPVNSEDSDTR QTEKKDSKIVPGNEKQIVGTPVNSEDSDTR QIVGTPVNSEDSDTRQTSHLQARSLSEINK K Q I T R Q 0 1 1 2 0 1 1 1 0 1 0 0 0 0 1 2 2 0 0 2 0 0 15 0 1616.7642 Q5QJE6;J3KP30;B7Z854 Q5QJE6 228 242 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 8.0707E-22 140.39 2 2 1.1844 1.1621 11.08 4 Median 0.98715 1.05 10.365 2 0 Median 1.4344 1.2283 3.8532 2 0 Median 131700000 62857000 68844000 77618000 38001000 39617000 54084000 24856000 29228000 10849 1813 11142 28634;28635;28636;28637 44770;44771;44772;44773;44774 44770 5 QKEEEEATASERNDADEK QSESKPPKKKKKKRRQKEEEEATASERNDA EEEATASERNDADEKHPEHAEQNIRKSKKK R Q K E K H 3 1 1 2 0 1 6 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 18 2 2077.9036 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 211 228 GPATCH4 G patch domain-containing protein 4 yes no 3;4 0.0078598 30.945 2 2.0696 2.1441 0.50899 2 Median NaN NaN NaN 0 0 Median 2.0696 2.1441 0.50899 2 0 Median 17713000 5934400 11778000 0 0 0 17713000 5934400 11778000 10850 1820 11143 28638;28639 44775;44776 44775 2 QKPELLNK KICDVYNAVMDVVKKQKPELLNKITKNLGF VMDVVKKQKPELLNKITKNLGFGMGIEFRE K Q K N K I 0 0 1 0 0 1 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 8 1 968.56548 Q9Y5B9;Q0VGA3 Q9Y5B9 336 343 SUPT16H FACT complex subunit SPT16 yes no 2 0.039089 83.753 2 0.95139 0.8084 0.53636 2 Median NaN NaN NaN 0 0 Median 0.95139 0.8084 0.53636 2 0 Median 68647000 34658000 33989000 0 0 0 68647000 34658000 33989000 10851 2148 11144 28640;28641 44777;44778;44779 44778 3 QKPQEVPQENGMEDPSISFSK EECEEMSEKPKKKKKQKPQEVPQENGMEDP PQENGMEDPSISFSKPKKKKSFSKEELMSS K Q K S K P 0 0 1 1 0 3 3 1 0 1 0 2 1 1 3 3 0 0 0 1 0 0 21 1 2374.1111 A8K9K6;O00567;Q9BSN3 A8K9K6 485 505 NOP56 Nucleolar protein 56 yes no 3 3.9157E-08 62.325 2 2 1.1151 1.0976 5.3626 4 Median 0.93236 1.0943 8.7066 2 0 Median 1.2584 1.0976 3.2212 2 0 Median 57947000 29058000 28889000 52447000 26603000 25844000 5499700 2454800 3044900 10852 785 11145;11146 28642;28643;28644;28645 44780;44781;44782;44783;44784;44785;44786;44787 44780 622 8 QLADETLLK DQIAQLEASLAAAKKQLADETLLKVDLENR LAAAKKQLADETLLKVDLENRCQSLTEDLE K Q L L K V 1 0 0 1 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1029.5706 P20700;E9PBF6;A0A0D9SFE5;Q6DC98 P20700 183 191 LMNB1 Lamin-B1 yes no 2 0.0070864 62.546 2 1.4984 1.5153 NaN 1 Median 1.4984 1.5153 NaN 1 0 Median NaN NaN NaN 0 0 Median 10424000 6330600 4093300 10424000 6330600 4093300 0 0 0 10853 1502 11147 28646;28647 44788;44789 44788 2 QLAEEDLAQQR AARLSVAAQEAARLRQLAEEDLAQQRALAE ARLRQLAEEDLAQQRALAEKMLKEKMQAVQ R Q L Q R A 2 1 0 1 0 3 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1299.6419 Q15149 Q15149 2432 2442 PLEC Plectin yes yes 2 0.00013138 95.775 1 2 2.2452 1.9637 32.078 3 Median 1.2142 1.2187 NaN 1 0 Median 2.4089 2.0987 9.4048 2 0 Median 12620000 5419800 7200100 9164100 4299700 4864500 3455800 1120200 2335700 10854 1754 11148 28648;28649;28650 44790;44791;44792 44790 2 QLASGLLLVTGPLVLNR ILTGRHRGKRVVFLKQLASGLLLVTGPLVL ASGLLLVTGPLVLNRVPLRRTHQKFVIATS K Q L N R V 1 1 1 0 0 1 0 2 0 0 6 0 0 0 1 1 1 0 0 2 0 0 17 0 1763.0669 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 167 183 RPL6 60S ribosomal protein L6 yes no 2 1.876E-127 249.28 2 0.91844 1.0375 4.2939 2 Median 0.91844 1.0375 4.2939 2 0 Median NaN NaN NaN 0 0 Median 150400000 77547000 72852000 150400000 77547000 72852000 0 0 0 10855 342 11149 28651;28652 44793;44794;44795;44796;44797;44798;44799;44800 44794 8 QLDECASAITK HKLKAQQDKLDKINKQLDECASAITKAQVA KINKQLDECASAITKAQVAIKTADRNLQKA K Q L T K A 2 0 0 1 1 1 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 11 0 1234.5864 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 912 922 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.2696E-05 104.05 2 2 1.7654 1.4053 37.151 3 Median 0.76039 0.76817 NaN 1 0 Median 1.8221 1.4574 5.1448 2 0 Median 97012000 61454000 35558000 60606000 49144000 11462000 36406000 12310000 24096000 10856 2070 11150 28653;28654;28655;28656 44801;44802;44803;44804;44805;44806;44807 44803 7 QLDSIVGER NLEPLFEQYINNLRRQLDSIVGERGRLDSE INNLRRQLDSIVGERGRLDSELRNMQDLVE R Q L E R G 0 1 0 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1015.5298 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;F8W0C6 CON__P13647 229 237 KRT6C;KRT6A;KRT5 Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5 no no 2 0.0027333 79.906 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95949000 95949000 0 89277000 89277000 0 6671300 6671300 0 + 10857 1162;859;1154 11151 28657;28658;28659 44808;44809;44810;44811;44812 44811 5 QLEEAEEEAQR DQADKASTRLKQLKRQLEEAEEEAQRANAS QLKRQLEEAEEEAQRANASRRKLQRELEDA R Q L Q R A 2 1 0 0 0 2 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1330.6001 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1878 1888 MYH9;FLJ00279 Myosin-9 yes no 2 7.8874E-05 98.048 1 1.8656 1.855 NaN 1 Median 1.8656 1.855 NaN 1 0 Median NaN NaN NaN 0 0 Median 8481600 2805000 5676600 8481600 2805000 5676600 0 0 0 10858 81 11152 28660 44813 44813 1 QLEEEQAVRPK NLCSEYVKDIYAYLRQLEEEQAVRPKYLLG AYLRQLEEEQAVRPKYLLGREVTGNMRAIL R Q L P K Y 1 1 0 0 0 2 3 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 11 1 1325.6939 P14635;E9PC90;H1UBN2 P14635 180 190 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2;3 5.2869E-79 230.06 4 2 0.67814 0.78022 13.716 6 Median 0.66002 0.73428 8.4043 4 0 Median 1.0901 0.91297 6.2588 2 0 Median 97385000 52432000 44953000 85592000 46906000 38687000 11793000 5525900 6266600 10859 1483 11153 28661;28662;28663;28664;28665;28666 44814;44815;44816;44817;44818;44819;44820;44821;44822 44818 9 QLELENLTTQETR LTLISEDIKSYYTVRQLELENLTTQETREI VRQLELENLTTQETREILHFHYTTWPDFGV R Q L T R E 0 1 1 0 0 2 3 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 13 0 1573.7948 A8K3M3;P18031;B4DSN5 A8K3M3 157 169 PTPN1 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 1 yes no 2 0.046081 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4344700 4344700 0 4344700 4344700 0 0 0 0 10860 724 11154 28667 44823 44823 1 QLEVEPEEPEAENK LRMIVMGHRRVHISRQLEVEPEEPEAENKH RQLEVEPEEPEAENKHKPRRKSKRGKKEAE R Q L N K H 1 0 1 0 0 1 6 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 14 0 1639.7577 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0 K7EJE8 105 118 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 1.3572E-06 100.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10861 946 11155 28668 44824 44824 1 QLFHPEQLITGK LEPTVIDEVRTGTYRQLFHPEQLITGKEDA TYRQLFHPEQLITGKEDAANNYARGHYTIG R Q L G K E 0 0 0 0 0 2 1 1 1 1 2 1 0 1 1 0 1 0 0 0 0 0 12 0 1409.7667 B3KT06;B3KPS3;P68363;A8JZY9;F8VVB9;F8VRZ4;F8VS66;F8VX09;F8VWV9;C9K0S6;Q6QMJ5;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2;Q71U36;Q1ZYQ1;Q13748;Q6PEY2;F8VQQ4 B3KT06 50 61 TUBA1B;TUBA1A;TUBA1C;TUBA8;TUBA1;TUBA4A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2;3 3.6932E-29 164.9 4 4 1.3829 2.1438 28.74 7 Linear 1.654 1.9434 4.9883 3 0 Plateau 1.342 1.1075 1.3842 4 0 Linear 649520000 247510000 402000000 554940000 208590000 346340000 94580000 38920000 55660000 10862 922;1257;1659;1869 11156 28669;28670;28671;28672;28673;28674;28675;28676 44825;44826;44827;44828;44829;44830;44831;44832;44833;44834;44835;44836;44837;44838;44839;44840;44841 44833 17 QLFNSLATQEGEWK SEIMERDAERKRKVKQLFNSLATQEGEWKA KQLFNSLATQEGEWKALKRKKFKK______ K Q L W K A 1 0 1 0 0 2 2 1 0 0 2 1 0 1 0 1 1 1 0 0 0 0 14 0 1649.8049 A8KA74;P78316 A8KA74 835 848 NOP14 Nucleolar protein 14 yes no 2 0.017652 42.475 1 1.5239 1.2429 NaN 1 Median NaN NaN NaN 0 0 Median 1.5239 1.2429 NaN 1 0 Median 5832800 2460000 3372900 0 0 0 5832800 2460000 3372900 10863 790 11157 28677 44842;44843 44843 2 QLFSSLFSGILK TPLQAVAQRDPIIAKQLFSSLFSGILKEMD IAKQLFSSLFSGILKEMDKFKTLSEKNNIT K Q L L K E 0 0 0 0 0 1 0 1 0 1 3 1 0 2 0 3 0 0 0 0 0 0 12 0 1338.7547 P78527 P78527 2807 2818 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.2866E-05 102.06 2 0.56657 0.56873 4.2227 2 Median 0.56657 0.56873 4.2227 2 0 Median NaN NaN NaN 0 0 Median 12256000 7544800 4710900 12256000 7544800 4710900 0 0 0 10864 1665 11158 28678;28679 44844;44845;44846;44847 44845 4 QLGEVELQCGICTK VMDTQAGSVDEENGRQLGEVELQCGICTKW RQLGEVELQCGICTKWFTADTFGIDTSSCL R Q L T K W 0 0 0 0 2 2 2 2 0 1 2 1 0 0 0 0 1 0 0 1 0 0 14 0 1633.7804 A8K6T5;Q9UBL3;E5RFH5 A8K6T5 109 122 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.0049382 44.612 1 1.5327 1.2235 NaN 1 Median NaN NaN NaN 0 0 Median 1.5327 1.2235 NaN 1 0 Median 1976200 785830 1190400 0 0 0 1976200 785830 1190400 10865 763 11159 28680 44848 44848 1 QLGGLYINFNADK LKLTSSSIDPGLSIKQLGGLYINFNADKLQ IKQLGGLYINFNADKLQSNKRTLTQIKEKK K Q L D K L 1 0 2 1 0 1 0 2 0 1 2 1 0 1 0 0 0 0 1 0 0 0 13 0 1451.7409 Q5QJE6 Q5QJE6 572 584 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.0037874 63.864 2 2 1.396 1.1111 6.0906 2 Median NaN NaN NaN 0 0 Median 1.396 1.1111 6.0906 2 0 Median 53859000 38828000 15031000 21273000 21273000 0 32586000 17555000 15031000 10866 1813 11160 28681;28682;28683;28684 44849;44850;44851;44852 44849 4 QLGLPHQR ALKQYRASPSFEERKQLGLPHQRRGGNFKS PSFEERKQLGLPHQRRGGNFKSKSRYKRRK K Q L Q R R 0 1 0 0 0 2 0 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 8 0 947.5301 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 743 750 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2;3 0.0067697 56.547 3 0.78052 0.83391 9.9009 2 Median 0.78052 0.83391 9.9009 2 0 Median NaN NaN NaN 0 0 Median 53047000 28936000 24111000 53047000 28936000 24111000 0 0 0 10867 899;1099 11161 28685;28686;28687 44853;44854;44855;44856 44855 4 QLGLPTALK GPLEQFPHSMEPQLRQLGLPTALKRGVVTL MEPQLRQLGLPTALKRGVVTLLSDYEVCKE R Q L L K R 1 0 0 0 0 1 0 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 9 0 939.57532 A0A024RAE1;Q9UKD2 A0A024RAE1 155 163 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 0.0091583 60.436 1 2 0.93967 0.75145 34.143 3 Median 1.2302 1.3268 NaN 1 0 Median 0.90993 0.73535 3.0614 2 0 Median 52599000 22983000 29616000 37458000 14741000 22717000 15141000 8242600 6898700 10868 302 11162 28688;28689;28690 44857;44858;44859;44860 44860 4 QLGQSEGSVSLSLVK IEAAIGPEAAKIARKQLGQSEGSVSLSLVK QLGQSEGSVSLSLVKEQAFGGLTRALALDC K Q L V K E 0 0 0 0 0 2 1 2 0 0 3 1 0 0 0 4 0 0 0 2 0 0 15 0 1530.8253 Q9GZR2;B4E331;B4DJ95;A0A0C4DG22 Q9GZR2 219 233 REXO4 RNA exonuclease 4 yes no 2 0.0016911 47.039 1 1.5917 1.2672 NaN 1 Median NaN NaN NaN 0 0 Median 1.5917 1.2672 NaN 1 0 Median 6708700 2675900 4032900 0 0 0 6708700 2675900 4032900 10869 2021 11163 28691 44861;44862 44861 2 QLIELDYLNPGSIR LKKCHIAVGSPGRIKQLIELDYLNPGSIRL KQLIELDYLNPGSIRLFILDEADKLLEEGS K Q L I R L 0 1 1 1 0 1 1 1 0 2 3 0 0 0 1 1 0 0 1 0 0 0 14 0 1629.8726 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6 Q8TDR3 193 206 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 2 0.00056856 78.342 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2846800 0 2846800 2846800 0 2846800 0 0 0 10870 1901 11164 28692 44863;44864 44864 2 QLIPIFTDVALK QNGTVYTCSSDGKVRQLIPIFTDVALKFEH KVRQLIPIFTDVALKFEHQLIKLSDVFGSV R Q L L K F 1 0 0 1 0 1 0 0 0 2 2 1 0 1 1 0 1 0 0 1 0 0 12 0 1356.8017 Q9UKN8;Q05CN7 Q9UKN8 449 460 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.0045039 53.327 2 0.88184 0.8924 8.7483 2 Median 0.88184 0.8924 8.7483 2 0 Median NaN NaN NaN 0 0 Median 13834000 7093800 6740300 13834000 7093800 6740300 0 0 0 10871 2107 11165 28693;28694 44865;44866;44867;44868 44865 4 QLIVGVNK QTREHALLAYTLGVKQLIVGVNKMDSTEPP AYTLGVKQLIVGVNKMDSTEPPYSQKRYEE K Q L N K M 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 2 0 0 8 0 869.53345 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;Q53G89;Q9NZS6;A0A087WV01;Q9H2I7;Q16577;A9X7H1;Q05639;Q59GP5;Q53HR1 Q6IPT9 147 154 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2 0.024989 55.504 1 1 1.8975 1.8884 49.367 2 Median 2.2677 2.6773 NaN 1 0 Median 1.5877 1.3319 NaN 1 0 Median 1074100000 340480000 733590000 1026100000 321540000 704530000 48010000 18947000 29063000 10872 1658;1790 11166 28695;28696 44869;44870 44869 2 QLLCGAAIGTHEDDK KKNRDYPLASKDAKKQLLCGAAIGTHEDDK QLLCGAAIGTHEDDKYRLDLLAQAGVDVVV K Q L D K Y 2 0 0 2 1 1 1 2 1 1 2 1 0 0 0 0 1 0 0 0 0 0 15 0 1626.7672 H0Y4R1;P12268;B7Z1G4;Q6QE17;E7ETK5;Q6RUP9 H0Y4R1 175 189 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 4.0057E-06 90.725 4 4 1.2992 1.0496 8.5787 7 Median 0.96223 1.0318 10.11 3 0 Median 1.3493 1.0632 5.0921 4 0 Median 96209000 45020000 51189000 81454000 39004000 42450000 14755000 6016400 8738900 10873 1282 11167 28697;28698;28699;28700;28701;28702;28703;28704 44871;44872;44873;44874;44875;44876;44877;44878;44879;44880 44873 10 QLLFEDTSLTFGTSSR RTAFYNEDDSEEEQRQLLFEDTSLTFGTSS LLFEDTSLTFGTSSRGRVRKLTEKAKANLI R Q L S R G 0 1 0 1 0 1 1 1 0 0 3 0 0 2 0 3 3 0 0 0 0 0 16 0 1800.8894 Q8WWQ0;Q9NWP3 Q8WWQ0 1789 1804 PHIP PH-interacting protein yes no 2 5.7666E-12 113.77 2 2 1.2261 1.1161 17.71 4 Median 0.96307 0.96655 4.5558 2 0 Median 1.5412 1.3014 5.9334 2 0 Median 31949000 14822000 17127000 18516000 9277700 9238700 13432000 5544300 7887800 10874 1942 11168 28705;28706;28707;28708 44881;44882;44883;44884;44885;44886;44887 44882 6 QLLGEHLTAILQK LDHSTQKPLIACVEKQLLGEHLTAILQKGL EKQLLGEHLTAILQKGLDHLLDENRVPDLA K Q L Q K G 1 0 0 0 0 2 1 1 1 1 4 1 0 0 0 0 1 0 0 0 0 0 13 0 1462.8508 Q13619;A0A0A0MR50;B2RBV7 Q13619 293 305 CUL4A Cullin-4A no no 3 0.022049 24.558 2 0.94948 0.75951 4.0433 2 Median NaN NaN NaN 0 0 Median 0.94948 0.75951 4.0433 2 0 Median 14292000 7557000 6734700 0 0 0 14292000 7557000 6734700 10875 1718 11169 28709;28710 44888;44889;44890 44890 3 QLLLTPNAVVIVEDAK PVVKYDRKGYKPRSRQLLLTPNAVVIVEDA LLLTPNAVVIVEDAKVKQRIDYANLTGISV R Q L A K V 2 0 1 1 0 1 1 0 0 1 3 1 0 0 1 0 1 0 0 3 0 0 16 0 1721.9927 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 915 930 MYO1C Unconventional myosin-Ic no no 2 0.00040914 50.145 2 1.4091 1.1216 6.8618 2 Median NaN NaN NaN 0 0 Median 1.4091 1.1216 6.8618 2 0 Median 8239400 3279600 4959800 0 0 0 8239400 3279600 4959800 10876 1088;1189 11170 28711;28712 44891;44892;44893 44892 3 QLLQANPILEAFGNAK ASSHKSKKDQGELERQLLQANPILEAFGNA LLQANPILEAFGNAKTVKNDNSSRFGKFIR R Q L A K T 3 0 2 0 0 2 1 1 0 1 3 1 0 1 1 0 0 0 0 0 0 0 16 0 1725.9414 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;Q7Z406;M0QY43 A0A024R1N1 210 225 MYH9;MYH11;MYH14 Myosin-9;Myosin-11;Myosin-14 no no 2 1.4377E-17 131.17 2 1 1.6639 1.8434 4.1483 2 Median 1.6639 1.8434 4.1483 2 0 Median NaN NaN NaN 0 0 Median 158490000 48420000 110070000 132830000 48420000 84405000 25665000 0 25665000 10877 81;1875 11171 28713;28714;28715 44894;44895;44896;44897;44898;44899 44895 6 QLLQVIQEK KKSQKDDEEQIAKYRQLLQVIQEKEKKGKE QIAKYRQLLQVIQEKEKKGKENDMEMEIKW R Q L E K E 0 0 0 0 0 3 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1097.6445 Q9H501;A0JLU5;Q05C10;A0A087WX71 Q9H501 584 592 ESF1 ESF1 homolog yes no 2 0.0011318 90.657 3 1.2628 1.2875 NaN 1 Median 1.2628 1.2875 NaN 1 0 Median NaN NaN NaN 0 0 Median 17506000 5352100 12154000 17506000 5352100 12154000 0 0 0 10878 2033 11172 28716;28717;28718 44900;44901;44902 44902 3 QLLSYITK PELGVEEEPFHTIMKQLLSYITKDKQTESL PFHTIMKQLLSYITKDKQTESLVEKLCQRF K Q L T K D 0 0 0 0 0 1 0 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 8 0 964.55933 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1192 1199 NCAPD2 Condensin complex subunit 1 yes no 2 0.01426 63.419 2 2 1.1569 1.0748 21.319 4 Median 0.81508 0.89325 5.2585 2 0 Median 1.6048 1.2842 4.2605 2 0 Median 112570000 55082000 57486000 85481000 44825000 40656000 27087000 10257000 16831000 10879 908 11173 28719;28720;28721;28722 44903;44904;44905;44906;44907;44908 44904 6 QLNLENVVGDK LLQINDKIALKEITRQLNLENVVGDKVFGS EITRQLNLENVVGDKVFGSFAENLSFLLEA R Q L D K V 0 0 2 1 0 1 1 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1227.6459 A8K7H4;O43929;Q96B14;B7Z2M4;CON__Q2YDI2;C9JGH7;C9J2X8;Q53SE3 A8K7H4 117 127 ORC4;ORC4L Origin recognition complex subunit 4 yes no 2 0.020453 43.77 1 1.2818 1.0503 NaN 1 Median NaN NaN NaN 0 0 Median 1.2818 1.0503 NaN 1 0 Median 2487900 1037000 1450900 0 0 0 2487900 1037000 1450900 + 10880 772 11174 28723 44909 44909 1 QLNPESIRPGGPGGLSR SWWRPEPTMPPTSWRQLNPESIRPGGPGGL NPESIRPGGPGGLSRSLGREEEEDEEEELE R Q L S R S 0 2 1 0 0 1 1 4 0 1 2 0 0 0 3 2 0 0 0 0 0 0 17 1 1733.9173 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 139 155 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 0.00053503 37.583 1 1 1.4331 1.3849 21.454 2 Median 1.1513 1.1899 NaN 1 0 Median 1.784 1.6117 NaN 1 0 Median 15474000 8061900 7411600 12563000 6930600 5632100 2910800 1131300 1779500 10881 122 11175 28724;28725 44910;44911;44912 44910 3 QLPLLTSALHGLQQQHPAFSGVAR LRDTAASLRLERDTRQLPLLTSALHGLQQQ HGLQQQHPAFSGVARLAKRWVRAQLLGEGF R Q L A R L 3 1 0 0 0 4 0 2 2 0 5 0 0 1 2 2 1 0 0 1 0 0 24 0 2568.3925 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 833 856 NOL6 Nucleolar protein 6 yes no 3;4 1.3699E-08 54.235 3 1.4088 1.1911 6.1419 2 Median NaN NaN NaN 0 0 Median 1.4088 1.1911 6.1419 2 0 Median 54987000 18236000 36751000 0 0 0 54987000 18236000 36751000 10882 2038 11176 28726;28727;28728 44913;44914;44915 44914 3 QLQEERPELSESELTR RPVSAMFIFSEEKRRQLQEERPELSESELT LQEERPELSESELTRLLARMWNDLSEKKKA R Q L T R L 0 2 0 0 0 2 5 0 0 0 3 0 0 0 1 2 1 0 0 0 0 0 16 1 1942.9596 E9PKP7;P17480;A8K962;O00164;B4DLB0;E9PLT2 E9PKP7 387 402 UBTF Nucleolar transcription factor 1 yes no 3 5.3638E-18 111.92 2 2 1.1156 1.052 19.617 4 Median 0.78792 0.89096 20.879 2 0 Median 1.3177 1.1452 9.3994 2 0 Median 292390000 155910000 136480000 207460000 119090000 88364000 84937000 36819000 48118000 10883 1244 11177 28729;28730;28731;28732 44916;44917;44918;44919;44920;44921;44922 44919 7 QLQLAQEAAQK EARRLRERAEQESARQLQLAQEAAQKRLQA ESARQLQLAQEAAQKRLQAEEKAHAFAVQQ R Q L Q K R 3 0 0 0 0 4 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1226.6619 Q15149 Q15149 2172 2182 PLEC Plectin yes yes 2 0.00044144 101.46 1 1.3806 1.365 NaN 1 Median 1.3806 1.365 NaN 1 0 Median NaN NaN NaN 0 0 Median 8369200 3507500 4861700 8369200 3507500 4861700 0 0 0 10884 1754 11178 28733 44923 44923 0 QLQQAQAAGAEQEVEK GELAKRSERRAEAEKQLQQAQAAGAEQEVE LQQAQAAGAEQEVEKFTKRLVKVTKQHNDE K Q L E K F 4 0 0 0 0 5 3 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 16 0 1726.8486 Q6FHX6;P39748;B4DWZ4;F5H1Y3 Q6FHX6 110 125 FEN1 Flap endonuclease 1 yes no 2 3.5214E-18 119.39 3 2 0.63877 0.51587 5.352 2 Median NaN NaN NaN 0 0 Median 0.63877 0.51587 5.352 2 0 Median 22519000 7319500 15200000 10891000 0 10891000 11628000 7319500 4308700 10885 1555 11179 28734;28735;28736;28737;28738 44924;44925;44926;44927;44928;44929;44930;44931 44927 8 QLSALHR DVMRFLLRVRCWQYRQLSALHRAPRPTRPD RVRCWQYRQLSALHRAPRPTRPDKARRLGY R Q L H R A 1 1 0 0 0 1 0 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 823.46644 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7ENU7;E7EX53;B4DEN1;E7ERA2;Q76N55 A0A024R2Q4 32 38 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 0.026734 77.496 2 2 0.83814 0.83076 26.199 4 Median 0.90788 1.0405 2.2881 2 0 Median 0.76905 0.66182 2.6035 2 0 Median 405420000 214200000 191220000 337360000 175630000 161720000 68067000 38568000 29500000 10886 121 11180 28739;28740;28741;28742 44932;44933;44934;44935;44936;44937;44938 44935 7 QLSAWCGPSSEDSR TGSHLCVLRSRKLLKQLSAWCGPSSEDSRG KQLSAWCGPSSEDSRGGRRAPGRGQQGLTR K Q L S R G 1 1 0 1 1 1 1 1 0 0 1 0 0 0 1 4 0 1 0 0 0 0 14 0 1578.6733 Q96F88;Q99575 Q96F88 814 827 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.038363 28.764 1 0.50643 0.44061 NaN 1 Median NaN NaN NaN 0 0 Median 0.50643 0.44061 NaN 1 0 Median 1909900 1274900 634910 0 0 0 1909900 1274900 634910 10887 1965 11181 28743 44939 44939 1 QLSESFK KSTPSRGSSSKSSSRQLSESFKSKEFVSSD SSSKSSSRQLSESFKSKEFVSSDESSSGEN R Q L F K S 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 7 0 837.42323 A0A024R4Z6;Q08945 A0A024R4Z6 655 661 SSRP1 FACT complex subunit SSRP1 yes no 2 0.026542 91.626 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 126270000 0 126270000 97914000 0 97914000 28354000 0 28354000 10888 167 11182 28744;28745;28746;28747 44940;44941;44942;44943 44942 4 QLSEVFIQLPSR IVDAVIKYKDSSSGRQLSEVFIQLPSRKEL SGRQLSEVFIQLPSRKELPEYYELIRKPVD R Q L S R K 0 1 0 0 0 2 1 0 0 1 2 0 0 1 1 2 0 0 0 1 0 0 12 0 1415.7773 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;B4E0F1;B4DSI8;B3KNW7;A0A0U1RRF5;A0A0U1RRD6;A0A0U1RRF8;A0A0A0MSS5;F6UH26;A0A0U1RR09;B1ALG1;F6T8Q0;B1ALG2;Q8N9Q1;P51531;F6VDE0;B4DSC8;A0A0U1RRG6;A0A0U1RQU0;F6XE55;A0A0U1RQW7;A0A0U1RRN2;A0A0U1RR83;A0A0U1RQX3;A0A0U1RR26;B4DNT1;B1ALF6 A7E2E1 1480 1491 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.00018123 83 2 2 1.2036 1.1328 47.249 4 Median 0.71463 0.73321 10.575 2 0 Median 1.943 1.6502 2.2547 2 0 Median 40096000 20631000 19466000 29568000 17467000 12101000 10528000 3163400 7364900 10889 695;1595 11183 28748;28749;28750;28751 44944;44945;44946;44947;44948 44945 5 QLSFAGVNGLR LTDKVQEARSNARLKQLSFAGVNGLRMLGI ARLKQLSFAGVNGLRMLGILHDAVVFLIEQ K Q L L R M 1 1 1 0 0 1 0 2 0 0 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1160.6302 Q03164;B4DIJ7 Q03164 3708 3718 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180;Histone-lysine N-methyltransferase yes no 2 0.031169 38.303 1 2.7256 2.3751 NaN 1 Median NaN NaN NaN 0 0 Median 2.7256 2.3751 NaN 1 0 Median 1491200 396590 1094600 0 0 0 1491200 396590 1094600 10890 1680 11184 28752 44949 44949 1 QLSSEELEQFQK KRLKGAFKAVMTSIKQLSSEELEQFQKTGT SIKQLSSEELEQFQKTGTIVVEGHELHDED K Q L Q K T 0 0 0 0 0 3 3 0 0 0 2 1 0 1 0 2 0 0 0 0 0 0 12 0 1464.7096 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2;Q7L4K8;Q9P1N9 Q59G75 935 946 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0005793 68.893 1 0.80781 0.66185 NaN 1 Median NaN NaN NaN 0 0 Median 0.80781 0.66185 NaN 1 0 Median 2554000 1404500 1149500 0 0 0 2554000 1404500 1149500 10891 1561 11185 28753 44950 44950 1 QLSSGVSEIR SPAVAAPAYSRALSRQLSSGVSEIRHTADR RALSRQLSSGVSEIRHTADRWRVSLDVNHF R Q L I R H 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 3 0 0 0 1 0 0 10 0 1074.5669 V9HW43;P04792;B4DL87;F8WE04 V9HW43 80 89 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 2.2309E-06 111.06 2 1 1.2824 1.4733 24.574 3 Median 1.3202 1.5243 4.8153 2 0 Median 1.21 1 NaN 1 0 Median 388970000 168670000 220300000 369650000 159840000 209810000 19325000 8831200 10494000 10892 1443 11186 28754;28755;28756 44951;44952;44953;44954;44955 44952 5 QLSVSLLCYNFLR RKAHELKLLSECQYKQLSVSLLCYNFLREA YKQLSVSLLCYNFLREALEVAVAGTELFRD K Q L L R E 0 1 1 0 1 1 0 0 0 0 4 0 0 1 0 2 0 0 1 1 0 0 13 0 1611.8443 B3KQ21;Q9NYH9;B3KX32 B3KQ21 374 386 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.050423 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10893 925 11187 28757 44956 44956 1 QLTQTTHTDKVPGDEDK PLGKRDIVEELSALKQLTQTTHTDKVPGDE TQTTHTDKVPGDEDKGINVFRETAKQKLDP K Q L D K G 0 0 0 3 0 2 1 1 1 0 1 2 0 0 1 0 4 0 0 1 0 0 17 1 1911.9174 P46013 P46013 2139 2155 MKI67 Antigen KI-67 yes yes 3 8.0038E-13 114.52 1 2 3.8639 3.2818 35.369 3 Median 1.573 1.7994 NaN 1 0 Median 3.9058 3.3193 1.6058 2 0 Median 91840000 21500000 70339000 17381000 6439700 10942000 74458000 15061000 59398000 10894 1569 11188 28758;28759;28760 44957;44958;44959;44960;44961 44959 5 QLTSYVGSVRPLVTELDPDAPIR KSVYWENTLHTLKQRQLTSYVGSVRPLVTE VRPLVTELDPDAPIRQKMPLDDLDREDEVR R Q L I R Q 1 2 0 2 0 1 1 1 0 1 3 0 0 0 3 2 2 0 1 3 0 0 23 1 2525.349 P57740 P57740 308 330 NUP107 Nuclear pore complex protein Nup107 yes yes 3 0.053642 13.271 1 1.3771 1.1976 NaN 1 Median NaN NaN NaN 0 0 Median 1.3771 1.1976 NaN 1 0 Median 4776900 2263000 2513900 0 0 0 4776900 2263000 2513900 10895 1621 11189 28761 44962 44962 1 QLTVQMMQNPQILAALQER VEEEETGEETKLKARQLTVQMMQNPQILAA QMMQNPQILAALQERLDGLVETPTGYIESL R Q L E R L 2 1 1 0 0 5 1 0 0 1 3 0 2 0 1 0 1 0 0 1 0 0 19 0 2211.1504 F8VY35;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8W020;F8VXI6;F8VUX1;F8W0J6;B7Z2V4;B7Z5H0;F8VVB5 F8VY35 37 55 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2 7.0201E-08 88.507 2 1 2.0326 2.0447 8.8156 3 Plateau 1.9939 2.0246 1.3981 2 0 Median 2.0326 1.7396 NaN 1 0 Median 31413000 10331000 21082000 25447000 8535800 16911000 5966100 1795000 4171200 10896 332 11190;11191 28762;28763;28764 44963;44964;44965;44966;44967 44965 252;253 5 QLVAEQVTYQR SFRRDNNELLLFILKQLVAEQVTYQRNRFG FILKQLVAEQVTYQRNRFGAQQDTIEVPEK K Q L Q R N 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 1 0 1 2 0 0 11 0 1333.699 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6;Q9BWF4 B4DSV5 708 718 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 3.4794E-05 90.15 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12001000 0 12001000 12001000 0 12001000 0 0 0 10897 955 11192 28765;28766;28767 44968;44969;44970 44969 3 QLVESDINSLRR ADDFRTKYQTEQSLRQLVESDINSLRRILD SLRQLVESDINSLRRILDELTLCRSDLEAQ R Q L R R I 0 2 1 1 0 1 1 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 12 1 1428.7685 CON__Q14525;Q14525 CON__Q14525 153 164 KRT33B Keratin, type I cuticular Ha3-II yes no 2 0.011002 54.608 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6004800 0 6004800 6004800 0 6004800 0 0 0 + 10898 1169 11193 28768 44971 44971 1 QLWDTANTVK NNFNVETLKGQAVRKQLWDTANTVKEKFGR QAVRKQLWDTANTVKEKFGRKLYESLLVGS K Q L V K E 1 0 1 1 0 1 0 0 0 0 1 1 0 0 0 0 2 1 0 1 0 0 10 0 1174.5982 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 388 397 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.012313 50.805 1 0.57048 0.44914 NaN 1 Median NaN NaN NaN 0 0 Median 0.57048 0.44914 NaN 1 0 Median 3869800 2259800 1610000 0 0 0 3869800 2259800 1610000 10899 1479 11194 28769 44972 44972 1 QLYEEEIR ESRLEGLTDEINFLRQLYEEEIRELQSQIS DEINFLRQLYEEEIRELQSQISDTSVVLSM R Q L I R E 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1078.5295 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;F8W1U3;CON__Q9H552 CON__P05787 226 233 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.0010346 113.5 2 1 1.0955 1.2529 14.494 3 Median 1.0694 1.2208 3.6724 2 0 Median 1.8916 1.5628 NaN 1 0 Median 287690000 143560000 144130000 276260000 139060000 137200000 11432000 4503400 6929000 + 10900 1156 11195 28770;28771;28772 44973;44974;44975;44976;44977 44975 5 QLYHLGVVEAYSGLTK NKKLAAQSCALSLVRQLYHLGVVEAYSGLT LYHLGVVEAYSGLTKKKEGETVEPYKVNLS R Q L T K K 1 0 0 0 0 1 1 2 1 0 3 1 0 0 0 1 1 0 2 2 0 0 16 0 1776.941 Q08211;Q58F26;Q6PJK6 Q08211 249 264 DHX9 ATP-dependent RNA helicase A yes no 3 0.00012637 50.077 2 1.5592 1.2443 6.1711 2 Median NaN NaN NaN 0 0 Median 1.5592 1.2443 6.1711 2 0 Median 23112000 8478700 14633000 0 0 0 23112000 8478700 14633000 10901 1691 11196 28773;28774 44978;44979;44980;44981 44979 4 QLYLNPK SKEPGVREAVLNAYRQLYLNPKGDSARAKA EAVLNAYRQLYLNPKGDSARAKAQALIQNL R Q L P K G 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 7 0 874.49125 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 699 705 NCAPD2 Condensin complex subunit 1 yes no 2 0.028171 72.355 1 1 1.2276 1.1808 13.952 2 Median 0.94461 1.0699 NaN 1 0 Median 1.5954 1.3033 NaN 1 0 Median 124030000 56523000 67505000 90400000 44219000 46181000 33627000 12304000 21324000 10902 908 11197 28775;28776 44982;44983;44984 44982 3 QLYQDYSDVQAQEPNVK KSSLRNAAYFLSNLKQLYQDYSDVQAQEPN YQDYSDVQAQEPNVKETYDSSSLPALLFKA K Q L V K E 1 0 1 2 0 4 1 0 0 0 1 1 0 0 1 1 0 0 2 2 0 0 17 0 2023.9487 Q71F23;A8K8D2 Q71F23 363 379 CENPU Centromere protein U yes no 2 0.055399 21.913 1 1.479 1.1982 NaN 1 Median NaN NaN NaN 0 0 Median 1.479 1.1982 NaN 1 0 Median 2596500 1145100 1451500 0 0 0 2596500 1145100 1451500 10903 1866 11198 28777 44985 44985 1 QLYTVTMDVHSR GGLVVILLRTMNSLKQLYTVTMDVHSRYRT SLKQLYTVTMDVHSRYRTEAHQDVVGRFNE K Q L S R Y 0 1 0 1 0 1 0 0 1 0 1 0 1 0 0 1 2 0 1 2 0 0 12 0 1448.7082 Q05CW7;E9PMU0;Q9H0A0;A0A087WV29 Q9H0A0 159 170 NAT10 N-acetyltransferase 10 no no 2;3 4.8187E-05 95.822 4 4 1.5724 1.419 25.794 8 Median 1.723 1.7502 23.49 4 0 Median 1.513 1.2731 3.5737 4 0 Median 108770000 40479000 68287000 84552000 30618000 53934000 24214000 9861200 14353000 10904 2023;1687 11199;11200 28778;28779;28780;28781;28782;28783;28784;28785 44986;44987;44988;44989;44990;44991;44992;44993;44994;44995;44996 44987 1504 11 QMFFVISLDPPIK TTVLRLFLLPHKDQRQMFFVISLDPPIKQG QRQMFFVISLDPPIKQGQTRYHFLILLFSK R Q M I K Q 0 0 0 1 0 1 0 0 0 2 1 1 1 2 2 1 0 0 0 1 0 0 13 0 1533.8265 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 252 264 SSRP1 FACT complex subunit SSRP1 yes no 2 7.156E-05 84.687 2 1.0805 1.1139 1.7928 2 Median 1.0805 1.1139 1.7928 2 0 Median NaN NaN NaN 0 0 Median 35381000 16607000 18774000 35381000 16607000 18774000 0 0 0 10905 167 11201 28786;28787 44997;44998;44999;45000;45001;45002 44998 139 6 QMLDPANYGTGMER AGDGKSIKAFKESAKQMLDPANYGTGMERW KQMLDPANYGTGMERWPRTPKEEAQSLEDL K Q M E R W 1 1 1 1 0 1 1 2 0 0 1 0 2 0 1 0 1 0 1 0 0 0 14 0 1581.6916 P46013 P46013 2048 2061 MKI67 Antigen KI-67 yes yes 2 5.7679E-05 93.345 3 2 2.3581 2.4384 24.971 3 Plateau 2.3104 2.358 10.885 2 0 Median 1.8221 1.5626 NaN 1 0 Median 49981000 13476000 36505000 42085000 11194000 30891000 7895800 2281800 5614000 10906 1569 11202;11203 28788;28789;28790;28791;28792 45003;45004;45005;45006;45007;45008;45009 45004 1338;1339 7 QMQLENVSVALEFLDR QKKMHRKHNQRPTFRQMQLENVSVALEFLD MQLENVSVALEFLDRESIKLVSIDSKAIVD R Q M D R E 1 1 1 1 0 2 2 0 0 0 3 0 1 1 0 1 0 0 0 2 0 0 16 0 1890.9509 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98;O75369;A0A024R321 P21333 101 116 FLNA;FLNB Filamin-A;Filamin-B no no 2 5.9456E-05 77.593 2 1.6236 1.6638 10.951 2 Median 1.6236 1.6638 10.951 2 0 Median NaN NaN NaN 0 0 Median 14398000 4356200 10041000 14398000 4356200 10041000 0 0 0 10907 1504;1402 11204 28793;28794 45010;45011;45012;45013;45014 45012 1079 5 QMVIDVLHPGK IRTRKFMTNRLLQRKQMVIDVLHPGKATVP LQRKQMVIDVLHPGKATVPKTEIREKLAKM K Q M G K A 0 0 0 1 0 1 0 1 1 1 1 1 1 0 1 0 0 0 0 2 0 0 11 0 1235.6696 E7ETK0;A0A087WUS0;P62847 E7ETK0 22 32 RPS24 40S ribosomal protein S24 yes no 2 0.0048854 49.06 2 0.74563 0.59562 54.296 2 Median NaN NaN NaN 0 0 Median 0.74563 0.59562 54.296 2 0 Median 10931000 5550300 5381200 0 0 0 10931000 5550300 5381200 10908 413 11205;11206 28795;28796 45015;45016 45015 297 2 QNAEQHVTQLMSTEPLPR QCQLVPVVEIGISERQNAEQHVTQLMSTEP EQHVTQLMSTEPLPRTLSPTPASATAPTSQ R Q N P R T 1 1 1 0 0 3 2 0 1 0 2 0 1 0 2 1 2 0 0 1 0 0 18 0 2078.0215 Q9NQS7;B3KPD3 Q9NQS7 177 194 INCENP Inner centromere protein yes no 3 4.673E-06 73.788 2 1 1.2204 1.3342 18.372 3 Median 1.183 1.2842 5.4097 2 0 Median 2.1143 1.753 NaN 1 0 Median 72621000 34053000 38568000 61530000 30335000 31194000 11091000 3717900 7373600 10909 2059 11207;11208 28797;28798;28799 45017;45018;45019;45020;45021 45017 1893 5 QNAHIVEWSPR WNLVEGRSAFIKNIKQNAHIVEWSPRGEQY KNIKQNAHIVEWSPRGEQYVVIIQNKIDIY K Q N P R G 1 1 1 0 0 1 1 0 1 1 0 0 0 0 1 1 0 1 0 1 0 0 11 0 1335.6684 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 165 175 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 3 0.034755 20.857 1 1.2119 1.0113 NaN 1 Median NaN NaN NaN 0 0 Median 1.2119 1.0113 NaN 1 0 Median 10510000 4649300 5860800 0 0 0 10510000 4649300 5860800 10910 580 11209 28800 45022 45022 1 QNGDDPLLTYR KSNEDQSMGNWQIKRQNGDDPLLTYRFPPK QIKRQNGDDPLLTYRFPPKFTLKAGQVVTI R Q N Y R F 0 1 1 2 0 1 0 1 0 0 2 0 0 0 1 0 1 0 1 0 0 0 11 0 1290.6204 P02545;W8QEH3;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 472 482 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.020958 43.512 1 0.84646 0.86281 NaN 1 Median 0.84646 0.86281 NaN 1 0 Median NaN NaN NaN 0 0 Median 6884100 3779300 3104800 6884100 3779300 3104800 0 0 0 10911 1440 11210 28801 45023 45023 1 QNIFEFFER SDENGSTTPKVKKDKQNIFEFFERQTLLLR KVKKDKQNIFEFFERQTLLLRPGGKWYDLE K Q N E R Q 0 1 1 0 0 1 2 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 9 0 1228.5877 B2R5U7;C9J9W7;Q03701 B2R5U7 164 172 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.0022085 75.378 2 2 1.1201 1.1676 12.068 3 Plateau 1.1494 1.1528 1.8026 2 0 Median 1.1201 0.93644 NaN 1 0 Median 25471000 12067000 13403000 19735000 8351400 11384000 5735800 3715900 2019900 10912 836;1683 11211 28802;28803;28804;28805 45024;45025;45026;45027;45028;45029;45030 45024 7 QNIGVATFIGLDK DSIDIAQECVNFLKRQNIGVATFIGLDKMA KRQNIGVATFIGLDKMAVWAKKMTEIQTPE R Q N D K M 1 0 1 1 0 1 0 2 0 2 1 1 0 1 0 0 1 0 0 1 0 0 13 0 1374.7507 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 661 673 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 3.4455E-06 108.35 2 1 0.86201 0.93819 29.546 3 Median 0.82978 0.87792 9.3907 2 0 Median 1.8001 1.4455 NaN 1 0 Median 95132000 45615000 49517000 81148000 41895000 39253000 13984000 3719900 10264000 10913 2070 11212 28806;28807;28808 45031;45032;45033;45034;45035 45034 5 QNLAEMGLAVDPNR CSHIRHAWDHAKSVRQNLAEMGLAVDPNRA RQNLAEMGLAVDPNRAVPLRKRKVKAMEVD R Q N N R A 2 1 2 1 0 1 1 1 0 0 2 0 1 0 1 0 0 0 0 1 0 0 14 0 1526.7511 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;B4E098;D6RC60 Q9Y3C1 51 64 NOP16 Nucleolar protein 16 yes no 2 0.0004454 77.64 2 2 0.67333 0.57923 55.621 2 Median NaN NaN NaN 0 0 Median 0.67333 0.57923 55.621 2 0 Median 5536200 3200000 2336200 0 0 0 5536200 3200000 2336200 10914 2135 11213;11214 28809;28810;28811;28812 45036;45037;45038;45039 45037 1968 4 QNLAMTGEVSLTGK IVTALLSLAMGRPVRQNLAMTGEVSLTGKI RQNLAMTGEVSLTGKILPVGGIKEKTIAAK R Q N G K I 1 0 1 0 0 1 1 2 0 0 2 1 1 0 0 1 2 0 0 1 0 0 14 0 1447.7341 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ERR6 K7EJE8 745 758 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.00040086 72.34 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7434900 0 7434900 7434900 0 7434900 0 0 0 10915 946 11215 28813 45040 45040 771 1 QNLEPLFEQYINNLR TKWTLLQEQGTKTVRQNLEPLFEQYINNLR QNLEPLFEQYINNLRRQLDSIVGERGRLDS R Q N L R R 0 1 3 0 0 2 2 0 0 1 3 0 0 1 1 0 0 0 1 0 0 0 15 0 1889.9636 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;F8W0C6 CON__P13647 213 227 KRT6C;KRT6A;KRT5 Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5 no no 2 9.9535E-16 122.51 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30969000 30969000 0 30969000 30969000 0 0 0 0 + 10916 1162;859;1154 11216 28814;28815 45041;45042 45042 2 QNLEPLFEQYINNLRR TKWTLLQEQGTKTVRQNLEPLFEQYINNLR NLEPLFEQYINNLRRQLDSIVGERGRLDSE R Q N R R Q 0 2 3 0 0 2 2 0 0 1 3 0 0 1 1 0 0 0 1 0 0 0 16 1 2046.0647 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;F8W0C6 CON__P13647 213 228 KRT6C;KRT6A;KRT5 Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5 no no 3 0.0019764 45.723 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29019000 29019000 0 7937000 7937000 0 21082000 21082000 0 + 10917 1162;859;1154 11217 28816;28817;28818 45043;45044;45045 45045 3 QNLIEELRK KVSLTKTAKKGLELKQNLIEELRKCVDTYK KGLELKQNLIEELRKCVDTYKYLFIFSVAN K Q N R K C 0 1 1 0 0 1 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1141.6455 A0A024RAE1;Q9UKD2;B4DHZ2 A0A024RAE1 24 32 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2;3 0.01007 76.221 4 1.1361 1.2536 20.272 2 Median 1.1361 1.2536 20.272 2 0 Median NaN NaN NaN 0 0 Median 20752000 10088000 10664000 20752000 10088000 10664000 0 0 0 10918 302 11218 28819;28820;28821;28822 45046;45047;45048;45049 45047 4 QNLLSVGDYR LKMKPGRPRIKKDEKQNLLSVGDYRHRRTE KKDEKQNLLSVGDYRHRRTEQEEDEELLTE K Q N Y R H 0 1 1 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1163.5935 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 133 142 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.00089552 79.489 2 2 3.6448 3.4492 25.415 4 Median 2.5852 2.7532 1.8309 2 0 Median 5.0465 4.2741 0.28252 2 0 Median 122450000 31477000 90976000 76654000 23551000 53103000 45799000 7926000 37873000 10919 1391 11219 28823;28824;28825;28826 45050;45051;45052;45053;45054;45055;45056;45057;45058 45051 9 QNLVPFR RCIAALRQNQQNRSKQNLVPFRDSKLTRVF QNQQNRSKQNLVPFRDSKLTRVFQGFFTGR K Q N F R D 0 1 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 7 0 872.48684 O95235 O95235 454 460 KIF20A Kinesin-like protein KIF20A yes yes 2 0.034211 62.714 1 0.61156 0.60395 NaN 1 Median 0.61156 0.60395 NaN 1 0 Median NaN NaN NaN 0 0 Median 12732000 6966200 5765400 12732000 6966200 5765400 0 0 0 10920 1421 11220 28827 45059 45059 1 QNQTTSAVSTPASSETSK EASATKCIACQNPGKQNQTTSAVSTPASSE TTSAVSTPASSETSKAPKSGFEGMFTKKEG K Q N S K A 2 0 1 0 0 2 1 0 0 0 0 1 0 0 1 5 4 0 0 1 0 0 18 0 1822.8545 P49792 P49792 1635 1652 RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 0.0045055 47.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2166400 0 2166400 2166400 0 2166400 0 0 0 10921 1588 11221 28828 45060 45060 1 QNRPIPQWIR HKTFKIKQFLAKKQKQNRPIPQWIRMKTGN AKKQKQNRPIPQWIRMKTGNKIRYNSKRRH K Q N I R M 0 2 1 0 0 2 0 0 0 2 0 0 0 0 2 0 0 1 0 0 0 0 10 1 1306.7258 Q59GN2;P62891 Q59GN2 19 28 RPL39P5;RPL39 Putative 60S ribosomal protein L39-like 5;60S ribosomal protein L39 yes no 3 9.8667E-10 128.86 2 2 0.63511 0.61139 10.567 4 Median 0.5809 0.65509 11.237 2 0 Median 0.66959 0.5823 8.3661 2 0 Median 272250000 166340000 105920000 198250000 121850000 76394000 74010000 44486000 29524000 10922 1650 11222 28829;28830;28831;28832 45061;45062;45063;45064;45065;45066;45067 45063 7 QPAIISQLDPVNER GLRAAMEALVVEVTKQPAIISQLDPVNERM KQPAIISQLDPVNERMLNMIRQISRPSAAG K Q P E R M 1 1 1 1 0 2 1 0 0 2 1 0 0 0 2 1 0 0 0 1 0 0 14 0 1578.8366 Q08211;B3KU66 Q08211 1117 1130 DHX9 ATP-dependent RNA helicase A yes no 2 0.0042559 45.764 3 1.4391 1.5196 6.467 2 Median 1.4391 1.5196 6.467 2 0 Median NaN NaN NaN 0 0 Median 69316000 28688000 40628000 69316000 28688000 40628000 0 0 0 10923 1691 11223 28833;28834;28835 45068;45069;45070;45071 45071 4 QPCPSESDIITEEDK EVKIPKPRGRPKMVKQPCPSESDIITEEDK QPCPSESDIITEEDKSKKKGQEEKQPKKQP K Q P D K S 0 0 0 2 1 1 3 0 0 2 0 1 0 0 2 2 1 0 0 0 0 0 15 0 1746.7618 O75475;Q05CM9 O75475 202 216 PSIP1 PC4 and SFRS1-interacting protein yes no 2 3.71E-05 85.554 2 2 1.2251 0.9777 2.3052 2 Median NaN NaN NaN 0 0 Median 1.2251 0.9777 2.3052 2 0 Median 37932000 19795000 18137000 5019700 5019700 0 32912000 14775000 18137000 10924 1405 11224 28836;28837;28838;28839 45072;45073;45074;45075;45076 45073 5 QPDSPTALYHFNASLYLLR ALHAQVERLVQQAGRQPDSPTALYHFNASL PTALYHFNASLYLLRVLKGNTAEGCVHETQ R Q P L R V 2 1 1 1 0 1 0 0 1 0 4 0 0 1 2 2 1 0 2 0 0 0 19 0 2205.1219 Q9BQG0;I3L1L3 Q9BQG0 914 932 MYBBP1A Myb-binding protein 1A yes no 3 0.00010786 55.589 1 2 0.86004 0.72267 14.004 2 Median NaN NaN NaN 0 0 Median 0.86004 0.72267 14.004 2 0 Median 11040000 5404500 5635800 0 0 0 11040000 5404500 5635800 10925 1997 11225 28840;28841;28842 45077;45078;45079;45080;45081 45078 5 QPEDDLFDR EKRVFKNLQLFMENKQPEDDLFDRLNTGIL LFMENKQPEDDLFDRLNTGILNKHLQDLME K Q P D R L 0 1 0 3 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 9 0 1133.4989 P11387;B9EG90 P11387 559 567 TOP1 DNA topoisomerase 1 yes no 2 0.0019674 78.516 2 2 1.2078 1.1738 3.4504 4 Median 1.0435 1.1738 1.3913 2 0 Median 1.4314 1.2 5.3758 2 0 Median 193600000 91203000 102400000 154060000 74648000 79413000 39538000 16554000 22984000 10926 1470 11226 28843;28844;28845;28846 45082;45083;45084;45085;45086;45087;45088;45089;45090 45083 9 QPEDDLFDRLNTGILNK EKRVFKNLQLFMENKQPEDDLFDRLNTGIL EDDLFDRLNTGILNKHLQDLMEGLTAKVFR K Q P N K H 0 1 2 3 0 1 1 1 0 1 3 1 0 1 1 0 1 0 0 0 0 0 17 1 1987.0011 P11387;B9EG90 P11387 559 575 TOP1 DNA topoisomerase 1 yes no 3 0.042114 19.819 1 1.5149 1.2855 NaN 1 Median NaN NaN NaN 0 0 Median 1.5149 1.2855 NaN 1 0 Median 20614000 7718200 12896000 0 0 0 20614000 7718200 12896000 10927 1470 11227 28847 45091 45091 1 QPLPSAPENNPEEELASK PHPVSRPLNNTQKSKQPLPSAPENNPEEEL PSAPENNPEEELASKQKNEESKKRQWALED K Q P S K Q 2 0 2 0 0 1 4 0 0 0 2 1 0 0 4 2 0 0 0 0 0 0 18 0 1948.9378 O14965;A3KFJ0;B2R6Z3;Q5QPD4;A3KFJ1;Q5QPD2 O14965 100 117 AURKA Aurora kinase A yes no 2 0.011961 27.664 1 1.1485 1.1445 NaN 1 Median 1.1485 1.1445 NaN 1 0 Median NaN NaN NaN 0 0 Median 7928900 2345600 5583400 7928900 2345600 5583400 0 0 0 10928 1369 11228 28848 45092 45092 1 QPPVSPGTALVGSQK EKDGTEKRGRGRPRKQPPVSPGTALVGSQK QPPVSPGTALVGSQKEPSEVPTPKRPRGRP K Q P Q K E 1 0 0 0 0 2 0 2 0 0 1 1 0 0 3 2 1 0 0 2 0 0 15 0 1464.7936 B4DWA0;A0A024RCT9;P17096 B4DWA0 32 46 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 2 1.6269E-05 88.275 2 2 0.52842 0.52612 63.922 4 Median 0.77818 0.91991 2.9081 2 0 Median 0.36274 0.30417 1.3807 2 0 Median 1334400000 750030000 584330000 1235800000 678130000 557720000 98513000 71903000 26610000 10929 372 11229 28849;28850;28851;28852 45093;45094;45095;45096;45097 45093 5 QPPVSPGTALVGSQKEPSEVPTPK EKDGTEKRGRGRPRKQPPVSPGTALVGSQK LVGSQKEPSEVPTPKRPRGRPKGSKKTGEG K Q P P K R 1 0 0 0 0 2 2 2 0 0 1 2 0 0 6 3 2 0 0 3 0 0 24 1 2429.2802 B4DWA0;A0A024RCT9;P17096 B4DWA0 32 55 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 3 0.0015756 26.443 2 1 0.77476 0.89418 59.761 3 Median 0.7818 0.91611 3.4278 2 0 Median 0.38579 0.32567 NaN 1 0 Median 62752000 34862000 27890000 53379000 28569000 24810000 9373300 6293800 3079500 10930 372 11230 28853;28854;28855 45098;45099;45100;45101 45100 4 QPSLHMSAAAASR VGTFARALDCSSSIRQPSLHMSAAAASRDI IRQPSLHMSAAAASRDITLFHAMDTLQRNG R Q P S R D 4 1 0 0 0 1 0 0 1 0 1 0 1 0 1 3 0 0 0 0 0 0 13 0 1325.651 A0A024R534;O94776;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8;E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q86TR6 A0A024R534 215 227 MTA2;MTA3;tmp_locus_6;MTA1 Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 no no 2;3 0.0010682 48.704 3 0.93935 0.98614 6.2444 3 Median 0.93935 0.98614 6.2444 3 0 Median NaN NaN NaN 0 0 Median 40274000 19134000 21140000 40274000 19134000 21140000 0 0 0 10931 168;1223;1221 11231 28856;28857;28858 45102;45103;45104 45102 144 3 QPSYPSVK KVHKELFKDWNIPFKQPSYPSVKRYNRNRT DWNIPFKQPSYPSVKRYNRNRTLTQKLRME K Q P V K R 0 0 0 0 0 1 0 0 0 0 0 1 0 0 2 2 0 0 1 1 0 0 8 0 904.46543 Q9BYG3;C9J808;C9J6C5;B4DSM4 Q9BYG3 140 147 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 0.034378 49.442 1 1.0125 0.99687 NaN 1 Median 1.0125 0.99687 NaN 1 0 Median NaN NaN NaN 0 0 Median 24129000 11751000 12377000 24129000 11751000 12377000 0 0 0 10932 2019 11232 28859 45105 45105 1 QPTIFQNK ______________________________ TERAYQKQPTIFQNKKRVLLGETGKEKLPR K Q P N K K 0 0 1 0 0 2 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 8 0 974.51853 P62280;M0QZC5;M0R1H6 P62280 13 20 RPS11 40S ribosomal protein S11 yes no 2 0.0022282 101.69 2 2 1.0172 1.068 7.3432 4 Linear 0.93418 1.0516 2.0144 2 0 Median 1.0935 0.92894 1.9574 2 0 Median 321880000 167270000 154610000 198400000 107980000 90423000 123480000 59293000 64187000 10933 1641 11233 28860;28861;28862;28863 45106;45107;45108;45109;45110;45111 45106 6 QPVTDPLLTPVEK TPLEQEIFNLLHKNKQPVTDPLLTPVEKAS NKQPVTDPLLTPVEKASLRAMSLEEAKMRR K Q P E K A 0 0 0 1 0 1 1 0 0 0 2 1 0 0 3 0 2 0 0 2 0 0 13 0 1435.7922 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 197 209 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0043721 60.691 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11421000 11421000 0 11421000 11421000 0 0 0 0 10934 2008 11234 28864;28865 45112;45113 45113 2 QPYAVSELAGHQTSAESWGTGR DIVNFVHTNLRKNNRQPYAVSELAGHQTSA LAGHQTSAESWGTGRAVARIPRVRGGGTHR R Q P G R A 3 1 0 0 0 2 2 3 1 0 1 0 0 0 1 3 2 1 1 1 0 0 22 0 2331.088 P36578;Q59GY2;B4DMJ6;B4DFI6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 50 71 RPL4 60S ribosomal protein L4 yes no 3 1.3894E-17 112.36 2 2 0.87998 0.88254 4.787 4 Median 0.75127 0.84928 6.7288 2 0 Median 1.0242 0.88734 2.0629 2 0 Median 225180000 126890000 98291000 136960000 81489000 55476000 88216000 45400000 42815000 10935 1548 11235 28866;28867;28868;28869 45114;45115;45116;45117;45118;45119;45120;45121;45122;45123;45124 45119 11 QQAAQAFIHNSLYGPGTNR YLAVRLKDQDLRDSRQQAAQAFIHNSLYGP QAFIHNSLYGPGTNRTTVNKFLSLANKRLP R Q Q N R T 3 1 2 0 0 3 0 2 1 1 1 0 0 1 1 1 1 0 1 0 0 0 19 0 2072.0188 A0A024QZW2;Q9UMY1 A0A024QZW2 187 205 NOL7 Nucleolar protein 7 yes no 3 0.00021569 36.856 1 2 0.98933 0.93625 8.9404 3 Plateau 0.94391 0.94915 NaN 1 0 Median 1.0058 0.8172 3.2386 2 0 Median 41949000 22254000 19695000 17342000 9560900 7780900 24607000 12693000 11914000 10936 30 11236 28870;28871;28872 45125;45126;45127;45128;45129;45130 45125 6 QQASHYLYVR SPLGYAAIPIKFSEKQQASHYLYVRAHGVR KFSEKQQASHYLYVRAHGVRQGTKSTWPQK K Q Q V R A 1 1 0 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 2 1 0 0 10 0 1263.636 Q9Y3A4;A0A024R4U1 Q9Y3A4 34 43 RRP7A;hCG_2044797 Ribosomal RNA-processing protein 7 homolog A yes no 2;3 0.025756 49.418 1 1 1.2437 1.0574 NaN 1 Median NaN NaN NaN 0 0 Median 1.2437 1.0574 NaN 1 0 Median 9112900 3650600 5462300 0 0 0 9112900 3650600 5462300 10937 2133 11237 28873;28874 45131;45132 45132 2 QQDGELVGYR SSDNVDIRWMKPPTKQQDGELVGYRISHVW KPPTKQQDGELVGYRISHVWQSAGIS____ K Q Q Y R I 0 1 0 1 0 2 1 2 0 0 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1163.5571 Q53QW0;A0A087WZQ5;Q1RMG3;E9PHX8;B2RE75;Q12866 Q53QW0 412 421 MERTK Receptor protein-tyrosine kinase;Tyrosine-protein kinase Mer yes no 2 0.0031546 77.674 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15181000 15181000 0 15181000 15181000 0 0 0 0 10938 440 11238 28875 45133 45133 1 QQEELDALK ADLLQTKLQQSSYHKQQEELDALKKTIEES QSSYHKQQEELDALKKTIEESEETLKNTKE K Q Q L K K 1 0 0 1 0 2 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1072.5401 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 741 749 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.00085417 93.429 2 1 0.8597 0.93087 26.294 3 Median 0.85658 0.90067 4.6643 2 0 Median 1.7334 1.4151 NaN 1 0 Median 85219000 44570000 40649000 79552000 42722000 36830000 5666900 1847400 3819500 10939 69 11239 28876;28877;28878 45134;45135;45136 45134 3 QQEELDALKK ADLLQTKLQQSSYHKQQEELDALKKTIEES SSYHKQQEELDALKKTIEESEETLKNTKEI K Q Q K K T 1 0 0 1 0 2 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1200.635 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 741 750 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 0.0012812 89.698 2 3 1.8601 1.5867 31.722 5 Median 0.76069 0.90126 4.7654 2 0 Median 1.8699 1.6028 1.2571 3 0 Median 86478000 40430000 46048000 51588000 28127000 23461000 34890000 12302000 22587000 10940 69 11240 28879;28880;28881;28882;28883 45137;45138;45139;45140;45141;45142 45142 6 QQEELLAEENQR RRKQEELQQLEQQRRQQEELLAEENQRLRE QRRQQEELLAEENQRLREQLQLLEEQHRAA R Q Q Q R L 1 1 1 0 0 3 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1485.7059 Q15149;D3DWL0;H0YDN1 Q15149 2719 2730 PLEC;PLEC1 Plectin yes no 2 0.024309 48.998 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10941 1754 11241 28884 45143 45143 1 QQELDNLLHEK EQAEEQARQEEQVVRQQELDNLLHEKRYLR QVVRQQELDNLLHEKRYLRALGLAISLDRP R Q Q E K R 0 0 1 1 0 2 2 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1365.6888 Q12788;J3KNP2;A0JLS5 Q12788 654 664 TBL3 Transducin beta-like protein 3 yes no 3 0.0027153 40.475 1 1.0534 1.1405 NaN 1 Median 1.0534 1.1405 NaN 1 0 Median NaN NaN NaN 0 0 Median 43503000 21324000 22179000 43503000 21324000 22179000 0 0 0 10942 1698 11242 28885 45144 45144 1 QQEVEAITLELEELK AKTKADASSKKMKEKQQEVEAITLELEELK QQEVEAITLELEELKREHTSYKQQLEAVNE K Q Q L K R 1 0 0 0 0 2 5 0 0 1 3 1 0 0 0 0 1 0 0 1 0 0 15 0 1770.9251 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 816 830 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 2.8721E-07 135.02 2 2 1.1667 1.1173 25.417 4 Median 0.80488 0.89151 3.6448 2 0 Median 1.6782 1.382 1.7816 2 0 Median 178280000 87993000 90286000 107940000 57547000 50391000 70341000 30446000 39895000 10943 69 11243 28886;28887;28888;28889 45145;45146;45147;45148;45149;45150;45151;45152 45147 8 QQEVEAITLELEELKR AKTKADASSKKMKEKQQEVEAITLELEELK QEVEAITLELEELKREHTSYKQQLEAVNEA K Q Q K R E 1 1 0 0 0 2 5 0 0 1 3 1 0 0 0 0 1 0 0 1 0 0 16 1 1927.0262 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 816 831 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 0.000527 42.338 2 1.9172 1.6602 6.1411 2 Median NaN NaN NaN 0 0 Median 1.9172 1.6602 6.1411 2 0 Median 65845000 23148000 42698000 0 0 0 65845000 23148000 42698000 10944 69 11244 28890;28891 45153;45154 45153 1 QQGHFNSMVALAYSPDGQYIVTGGDDGK QLLVWEWQSESYVLKQQGHFNSMVALAYSP SPDGQYIVTGGDDGKVKVWNTLSGFCFVTF K Q Q G K V 2 0 1 3 0 3 0 5 1 1 1 1 1 1 1 2 1 0 2 2 0 0 28 0 2954.3505 Q15269;A0A0B4J2E5;Q59FM2 Q15269 369 396 PWP2 Periodic tryptophan protein 2 homolog yes no 3 0.00098319 34.885 2 0.96635 0.76648 NaN 1 Median NaN NaN NaN 0 0 Median 0.96635 0.76648 NaN 1 0 Median 7684200 2148100 5536100 0 0 0 7684200 2148100 5536100 10945 1756 11245 28892;28893 45155;45156;45157 45157 3 QQGLASYDYVR IIIIIEIIEKTEIIRQQGLASYDYVRRRLT EIIRQQGLASYDYVRRRLTAEDLFEARIIS R Q Q V R R 1 1 0 1 0 2 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 11 0 1298.6255 Q15149;D3DWL0;Q96IE3 Q15149 3771 3781 PLEC;PLEC1 Plectin yes no 2 5.5799E-08 116.52 3 2 1.8091 1.7559 11.071 2 Median 1.4826 1.6237 NaN 1 0 Median 2.2075 1.8989 NaN 1 0 Median 62475000 15791000 46684000 50703000 13418000 37285000 11771000 2372900 9398200 10946 1754 11246 28894;28895;28896;28897;28898 45158;45159;45160;45161;45162;45163 45160 6 QQGVLALRPYLQK STQEPCQRAAETVLKQQGVLALRPYLQKQP LKQQGVLALRPYLQKQPQPSPAEGRAVTNE K Q Q Q K Q 1 1 0 0 0 3 0 1 0 0 3 1 0 0 1 0 0 0 1 1 0 0 13 1 1512.8776 A8K492;P56192;B4E0E9;A0A024RBA2;H0YHV5 A8K492 192 204 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 0.062652 20.381 1 1.5207 1.3034 NaN 1 Median NaN NaN NaN 0 0 Median 1.5207 1.3034 NaN 1 0 Median 1605900 634730 971210 0 0 0 1605900 634730 971210 10947 732 11247 28899 45164 45164 1 QQHLAFR QQEAGMLLRQLANQKQQHLAFRDRRAYLFA LRQLANQKQQHLAFRDRRAYLFAHAVDFVP K Q Q F R D 1 1 0 0 0 2 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 898.47733 Q2NL82;I3L1Q5 Q2NL82 241 247 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 3 0.029587 38.818 2 0.91201 0.92545 18.661 2 Median 0.91201 0.92545 18.661 2 0 Median NaN NaN NaN 0 0 Median 15186000 8452100 6733500 15186000 8452100 6733500 0 0 0 10948 1776 11248 28900;28901 45165;45166;45167 45167 3 QQIESYPTDSILEDQSDQR LNPLTFVPAIASAIRQQIESYPTDSILEDQ SYPTDSILEDQSDQRVIIKLNIHVGNISLV R Q Q Q R V 0 1 0 3 0 4 2 0 0 2 1 0 0 0 1 3 1 0 1 0 0 0 19 0 2251.024 Q9H836;G5E975;Q12824;B5MCL5 Q9H836 252 270 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 2 0.0030143 60.161 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4043600 4043600 0 4043600 4043600 0 0 0 0 10949 1276 11249 28902;28903 45168;45169 45169 2 QQIQSIQQSIER VIACSVTIKEGSQLKQQIQSIQQSIERLLV QLKQQIQSIQQSIERLLV____________ K Q Q E R L 0 1 0 0 0 5 1 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 12 0 1456.7634 Q6FHM6;B1AHD1;P55769 Q6FHM6 114 125 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2 1.4895E-13 136.96 2 2 0.74617 0.748 3.2881 4 Median 0.67487 0.76742 1.0842 2 0 Median 0.83641 0.72711 1.4645 2 0 Median 521820000 303340000 218480000 278430000 173060000 105370000 243390000 130280000 113110000 10950 812 11250 28904;28905;28906;28907 45170;45171;45172;45173;45174;45175;45176;45177 45171 8 QQLEAVNEAIK TLELEELKREHTSYKQQLEAVNEAIKSYES TSYKQQLEAVNEAIKSYESQIEVMAAEVAK K Q Q I K S 2 0 1 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1241.6616 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 838 848 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0005685 74.162 2 2 1.22 1.1614 24.418 4 Median 0.83314 0.93441 2.4729 2 0 Median 1.7621 1.4252 0.67185 2 0 Median 265780000 143330000 122450000 218790000 127320000 91474000 46985000 16009000 30976000 10951 69 11251 28908;28909;28910;28911 45178;45179;45180;45181;45182;45183;45184;45185 45181 8 QQLLTLR SCLEELMKCQIIYPRQQLLTLRELEMIGFI KCQIIYPRQQLLTLRELEMIGFIENNVSKL R Q Q L R E 0 1 0 0 0 2 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 870.5287 Q15645 Q15645 348 354 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.010985 109.63 2 1.5098 1.5984 1.0563 2 Median 1.5098 1.5984 1.0563 2 0 Median NaN NaN NaN 0 0 Median 72857000 29279000 43578000 72857000 29279000 43578000 0 0 0 10952 1763 11252 28912;28913 45186;45187;45188 45186 3 QQLPEQPFEK KDHHQPLGRAKGVEKQQLPEQPFEKAAFQK KGVEKQQLPEQPFEKAAFQKQNDTPKGPQP K Q Q E K A 0 0 0 0 0 3 2 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 10 0 1242.6245 P46087 P46087 758 767 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.00038137 88.136 2 2 1.0984 1.0224 15.686 4 Median 1.0545 1.1722 4.5331 2 0 Median 1.1327 0.89871 3.4453 2 0 Median 142510000 66956000 75556000 110570000 53074000 57496000 31942000 13882000 18060000 10953 1570 11253 28914;28915;28916;28917 45189;45190;45191;45192 45189 4 QQLSAEELDAQLDAYNAR GGARGRGRGAGRNSKQQLSAEELDAQLDAY SAEELDAQLDAYNARMDTS___________ K Q Q A R M 4 1 1 2 0 3 2 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 18 0 2033.9654 E9PB61;Q86V81 E9PB61 243 260 ALYREF THO complex subunit 4 yes no 2 5.9745E-10 91.62 3 2 0.47986 0.4145 1.0939 2 Median NaN NaN NaN 0 0 Median 0.47986 0.4145 1.0939 2 0 Median 91940000 53107000 38832000 14408000 0 14408000 77532000 53107000 24425000 10954 1229 11254 28918;28919;28920;28921;28922 45193;45194;45195;45196;45197;45198;45199;45200 45194 8 QQNELAELHANLAR KVAGIESHSELQISRQQNELAELHANLARA RQQNELAELHANLARALQQVQEKEVRAQKL R Q Q A R A 3 1 2 0 0 2 2 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 14 0 1605.8223 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q4LE64;Q14980 Q4LE64 870 883 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 0.004039 49.298 1 2 1.0452 0.96671 31.571 2 Median 0.77754 0.77329 NaN 1 0 Median 1.4049 1.2085 NaN 1 0 Median 18805000 6861600 11943000 8313900 3941700 4372300 10491000 2919900 7570800 10955 186;1747 11255 28923;28924;28925 45201;45202;45203;45204;45205 45201 5 QQNQELQEQLR KLQMEKAKTHYDAKKQQNQELQEQLRSLEQ DAKKQQNQELQEQLRSLEQLQKENKELRAE K Q Q L R S 0 1 1 0 0 5 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1412.7008 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1612 1622 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 2.116E-06 105.52 3 2 1.5959 1.2903 5.2718 3 Median 1.2122 1.2197 NaN 1 0 Median 1.6021 1.3224 3.4705 2 0 Median 35824000 13134000 22690000 15439000 4993700 10445000 20386000 8140300 12246000 10956 186;1747 11256 28926;28927;28928;28929;28930 45206;45207;45208;45209;45210;45211;45212;45213 45207 8 QQPGIELPETELSLR KRRQQHRSRRSLRRRQQPGIELPETELSLR QQPGIELPETELSLRVGKDQRRNNEELVVS R Q Q L R V 0 1 0 0 0 2 3 1 0 1 3 0 0 0 2 1 1 0 0 0 0 0 15 0 1708.8996 G3XAG1;Q96ME7;B4DES6;B7Z9P6;Q658M0 G3XAG1 507 521 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2 0.00029768 60.49 1 2 0.75703 0.62488 6.4313 2 Median NaN NaN NaN 0 0 Median 0.75703 0.62488 6.4313 2 0 Median 27914000 13823000 14091000 2968600 0 2968600 24945000 13823000 11122000 10957 1275 11257 28931;28932;28933 45214;45215;45216;45217 45215 4 QQPPLAQPSASPYPEAVELQR LTAGSGGRGGGGGRRQQPPLAQPSASPYPE QPSASPYPEAVELQRRSLPIFQARGQLLAQ R Q Q Q R R 3 1 0 0 0 4 2 0 0 0 2 0 0 0 5 2 0 0 1 1 0 0 21 0 2305.1703 B4DIS6;Q9H6R0;Q05BE5;I3L0M5 B4DIS6 110 130 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.0055265 44.457 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10958 983 11258 28934 45218 45218 1 QQQEEEDLNLEDR ESRAYADPCSRRKKRQQQEEEDLNLEDRGE KRQQQEEEDLNLEDRGEETVLGGGTREAES R Q Q D R G 0 1 1 2 0 3 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 13 0 1644.7227 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9 Q5T3I0 340 352 GPATCH4 G patch domain-containing protein 4 yes no 2 6.5742E-06 100.88 2 1 1.9648 1.7711 NaN 1 Median NaN NaN NaN 0 0 Median 1.9648 1.7711 NaN 1 0 Median 5047400 694390 4353000 2990200 0 2990200 2057100 694390 1362700 10959 1820 11259 28935;28936;28937 45219;45220;45221 45220 3 QQQEEEDLNLEDRGEETVLGGGTR ESRAYADPCSRRKKRQQQEEEDLNLEDRGE LEDRGEETVLGGGTREAESRACSDGRSRKS R Q Q T R E 0 2 1 2 0 3 6 4 0 0 3 0 0 0 0 0 2 0 0 1 0 0 24 1 2701.2427 Q5T3I0;A8KAG1 Q5T3I0 340 363 GPATCH4 G patch domain-containing protein 4 yes no 3 6.1526E-21 107.08 2 2 1.4957 1.509 24.404 4 Median 1.1212 1.2228 1.3321 2 0 Median 2.1321 1.8652 1.5547 2 0 Median 82633000 31601000 51032000 37895000 17477000 20418000 44738000 14124000 30614000 10960 1820 11260 28938;28939;28940;28941 45222;45223;45224;45225;45226;45227;45228;45229;45230;45231;45232 45232 11 QQQEELEAEHGTGDK YVGPRLSRRILQQARQQQEELEAEHGTGDK QQQEELEAEHGTGDKPAAPRERTTRLGPRM R Q Q D K P 1 0 0 1 0 3 4 2 1 0 1 1 0 0 0 0 1 0 0 0 0 0 15 0 1697.7493 Q13895;F8WBL2 Q13895 64 78 BYSL Bystin yes no 3 0.051415 25.609 1 1 0.81631 0.69042 NaN 1 Median NaN NaN NaN 0 0 Median 0.81631 0.69042 NaN 1 0 Median 2433000 1949800 483180 1249000 1249000 0 1184100 700870 483180 10961 1724 11261 28942;28943 45233;45234 45234 2 QQQEELEAEHGTGDKPAAPR YVGPRLSRRILQQARQQQEELEAEHGTGDK LEAEHGTGDKPAAPRERTTRLGPRMPQDGS R Q Q P R E 3 1 0 1 0 3 4 2 1 0 1 1 0 0 2 0 1 0 0 0 0 0 20 1 2190.0301 Q13895;F8WBL2 Q13895 64 83 BYSL Bystin yes no 3;4 8.5779E-08 85.808 4 4 0.99465 0.90002 29.018 8 Median 1.0744 1.2033 30.879 4 0 Median 0.97503 0.8383 13.013 4 0 Median 41483000 20927000 20556000 27180000 13825000 13354000 14303000 7101900 7201200 10962 1724 11262 28944;28945;28946;28947;28948;28949;28950;28951 45235;45236;45237;45238;45239;45240;45241;45242 45237 7 QQQFNVQALVAVGDHASK HTSRAKGKQCFLVLRQQQFNVQALVAVGDH FNVQALVAVGDHASKQMVKFAANINKESIV R Q Q S K Q 3 0 1 1 0 4 0 1 1 0 1 1 0 1 0 1 0 0 0 3 0 0 18 0 1938.9912 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9;H7C278 D3DP78 49 66 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 0.00032923 29.092 2 0.82477 0.66094 1.4072 2 Median NaN NaN NaN 0 0 Median 0.82477 0.66094 1.4072 2 0 Median 8591700 4925700 3666000 0 0 0 8591700 4925700 3666000 10963 610 11263 28952;28953 45243;45244;45245 45244 3 QQQLLNEENLR YQDKLARQRYEDQLKQQQLLNEENLRKQEE DQLKQQQLLNEENLRKQEESVQKQEAMRRA K Q Q L R K 0 1 2 0 0 3 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1383.7106 Q9NVI7;H0Y2W2;Q96T67;Q5T9A4 Q9NVI7 195 205 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B yes no 2 0.0026738 72.325 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5014500 0 5014500 5014500 0 5014500 0 0 0 10964 2074 11264 28954 45246 45246 1 QQQVDIPLR QPRQGSPVAAGAPAKQQQVDIPLRLLVPTQ AGAPAKQQQVDIPLRLLVPTQYVGAIIGKE K Q Q L R L 0 1 0 1 0 3 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1095.6037 Q9NZI8;D3DTW3 Q9NZI8 191 199 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 0.019539 59.245 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14265000 0 14265000 14265000 0 14265000 0 0 0 10965 2087 11265 28955;28956 45247;45248 45247 2 QQQVLPLDPAEPEIR NTTSSPCKGRAKRRRQQQVLPLDPAEPEIR QQQVLPLDPAEPEIRLKYISSCKRLRSDSR R Q Q I R L 1 1 0 1 0 3 2 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 15 0 1731.9155 Q7Z5J4 Q7Z5J4 1562 1576 RAI1 Retinoic acid-induced protein 1 yes yes 2 0.00049803 56.205 1 1.6218 1.3555 NaN 1 Median NaN NaN NaN 0 0 Median 1.6218 1.3555 NaN 1 0 Median 3470300 1482700 1987600 0 0 0 3470300 1482700 1987600 10966 1879 11266 28957 45249 45249 1 QQSIAGSADSKPIDVSR AKEKIEKKGEKKEKKQQSIAGSADSKPIDV SIAGSADSKPIDVSRLDLRIGCIITARKHP K Q Q S R L 2 1 0 2 0 2 0 1 0 2 0 1 0 0 1 4 0 0 0 1 0 0 17 1 1757.8908 Q12904 Q12904 138 154 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes yes 3 0.0045357 31.115 1 1.0891 0.94045 NaN 1 Median NaN NaN NaN 0 0 Median 1.0891 0.94045 NaN 1 0 Median 2126900 981220 1145700 0 0 0 2126900 981220 1145700 10967 1702 11267 28958 45250;45251 45250 2 QQSVAHQQSGSELALR DEKIEELEALLQEARQQSVAHQQSGSELAL QSVAHQQSGSELALRRSQRLAASASTQQLQ R Q Q L R R 2 1 0 0 0 4 1 1 1 0 2 0 0 0 0 3 0 0 0 1 0 0 16 0 1737.8758 O95235 O95235 660 675 KIF20A Kinesin-like protein KIF20A yes yes 2;3 0.00022597 58.674 1 2 0.98303 0.90315 5.7471 2 Median 0.86024 0.86718 NaN 1 0 Median 1.1233 0.9406 NaN 1 0 Median 26145000 19095000 7049700 10551000 5682700 4868100 15594000 13412000 2181600 10968 1421 11268 28959;28960;28961 45252;45253;45254 45252 3 QQVPSGESAILDR VCSTNDLKELLIFNKQQVPSGESAILDRVA NKQQVPSGESAILDRVADGMVFGALLPCEE K Q Q D R V 1 1 0 1 0 2 1 1 0 1 1 0 0 0 1 2 0 0 0 1 0 0 13 0 1398.7103 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 270 282 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.00011686 84.658 2 1 0.68869 0.79129 12.073 3 Median 0.66 0.76065 5.5848 2 0 Median 1.0621 0.92684 NaN 1 0 Median 422530000 248400000 174130000 357280000 216980000 140290000 65260000 31420000 33839000 10969 139 11269 28962;28963;28964 45255;45256;45257;45258;45259;45260;45261;45262 45256 8 QQVQVVGLQEHLVNSADDVIK LLNKKAKLRVLEDGKQQVQVVGLQEHLVNS GLQEHLVNSADDVIKMIDMGSACRTSGQTF K Q Q I K M 1 0 1 2 0 4 1 1 1 1 2 1 0 0 0 1 0 0 0 5 0 0 21 0 2318.223 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;B7Z7M6;Q8N5N1 A8K3S3 427 447 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 3 5.55E-06 47.603 2 1.3052 1.0383 12.204 2 Median NaN NaN NaN 0 0 Median 1.3052 1.0383 12.204 2 0 Median 32363000 14209000 18154000 0 0 0 32363000 14209000 18154000 10970 626 11270 28965;28966 45263;45264;45265 45263 3 QQVQVVGLQER LLNRKTKLRVLEDGKQQVQVVGLQEREVKC EDGKQQVQVVGLQEREVKCVEDVLKLIDIG K Q Q E R E 0 1 0 0 0 4 1 1 0 0 1 0 0 0 0 0 0 0 0 3 0 0 11 0 1282.6993 B0AZS5;O00139;B4DM85;H0Y8H2 B0AZS5 346 356 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 0.00090132 71.614 1 0.66139 0.66117 NaN 1 Median 0.66139 0.66117 NaN 1 0 Median NaN NaN NaN 0 0 Median 11478000 6712000 4766100 11478000 6712000 4766100 0 0 0 10971 804 11271 28967 45266 45266 1 QRPASLVVADFGCGDCR KWPLQPVDRIARDLRQRPASLVVADFGCGD PASLVVADFGCGDCRLASSIRNPVHCFDLA R Q R C R L 2 2 0 2 2 1 0 2 0 0 1 0 0 1 1 1 0 0 0 2 0 0 17 1 1906.8778 O43159 O43159 305 321 RRP8 Ribosomal RNA-processing protein 8 yes yes 3 0.0046275 31.753 2 0.76326 0.69451 NaN 1 Median NaN NaN NaN 0 0 Median 0.76326 0.69451 NaN 1 0 Median 3586800 2460800 1126000 0 0 0 3586800 2460800 1126000 10972 1380 11272 28968;28969 45267;45268 45267 2 QRSLQSLEASLHAMESTRESLK LKEKRQQSEKTFMPKQRSLQSLEASLHAME EASLHAMESTRESLKAELGTDLLSQLSLED K Q R L K A 2 2 0 0 0 2 3 0 1 0 4 1 1 0 0 5 1 0 0 0 0 0 22 2 2500.2704 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 757 778 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 6 0.040453 13.731 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8866100 8866100 0 8866100 8866100 0 0 0 0 10973 803 11273 28970 45269 45269 1 QRVELQQEVEK SCRIKRVTQKEELERQRVELQQEVEKLARE ELERQRVELQQEVEKLARENSSMRLELDAL R Q R E K L 0 1 0 0 0 3 3 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 11 1 1384.731 A0A024R804;A8WFP5;O60675 A0A024R804 82 92 MAFK Transcription factor MafK yes no 2 1.1723E-09 137.89 2 1.688 1.906 18.806 2 Median 1.688 1.906 18.806 2 0 Median NaN NaN NaN 0 0 Median 52196000 20127000 32069000 52196000 20127000 32069000 0 0 0 10974 239 11274 28971;28972 45270;45271 45271 2 QRWENIATILEAK LQQKLLDAESEDRPKQRWENIATILEAKCA PKQRWENIATILEAKCALKYLIGELVSSKI K Q R A K C 2 1 1 0 0 1 2 0 0 2 1 1 0 0 0 0 1 1 0 0 0 0 13 1 1570.8467 Q59HG1;O95239;B3KNC0 Q59HG1 855 867 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 3 0.036117 23.956 1 1.5996 1.382 NaN 1 Median NaN NaN NaN 0 0 Median 1.5996 1.382 NaN 1 0 Median 2170600 862210 1308400 0 0 0 2170600 862210 1308400 10975 1803 11275 28973 45272 45272 1 QRYEILTPNSIPK CRQGFPNRVVFQEFRQRYEILTPNSIPKGF FRQRYEILTPNSIPKGFMDGKQACVLMIKA R Q R P K G 0 1 1 0 0 1 1 0 0 2 1 1 0 0 2 1 1 0 1 0 0 0 13 1 1557.8515 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 719 731 MYH9 Myosin-9 yes no 3 0.025314 21.831 2 3.5141 2.9185 0.51421 2 Median NaN NaN NaN 0 0 Median 3.5141 2.9185 0.51421 2 0 Median 8932800 1786100 7146800 0 0 0 8932800 1786100 7146800 10976 81 11276 28974;28975 45273;45274;45275 45274 3 QSCFIIFEDSSK GLFYLGTIKKINILKQSCFIIFEDSSKSWV ILKQSCFIIFEDSSKSWVLWKDIQTGATGS K Q S S K S 0 0 0 1 1 1 1 0 0 2 0 1 0 2 0 3 0 0 0 0 0 0 12 0 1459.6653 Q9Y483;Q96G26;Q7Z534 Q9Y483 74 85 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.017356 41.54 1 2.7126 2.2226 NaN 1 Median NaN NaN NaN 0 0 Median 2.7126 2.2226 NaN 1 0 Median 2453200 831500 1621700 0 0 0 2453200 831500 1621700 10977 2143 11277 28976 45276 45276 1 QSGEAFVELGSEDDVK DGAAGVHFIYTREGRQSGEAFVELGSEDDV SGEAFVELGSEDDVKMALKKDRESMGHRYI R Q S V K M 1 0 0 2 0 1 3 2 0 0 1 1 0 1 0 2 0 0 0 2 0 0 16 0 1708.7792 A0A024R7T3;P52597;A0A1B0GW42 A0A024R7T3 53 68 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2 1.1308E-08 98.902 3 2 1.1309 0.89121 33.363 3 Median 1.5181 1.568 NaN 1 0 Median 1.0907 0.88016 1.7644 2 0 Median 92231000 38106000 54125000 69641000 27306000 42336000 22589000 10800000 11789000 10978 234 11278 28977;28978;28979;28980;28981 45277;45278;45279;45280;45281;45282;45283;45284;45285;45286;45287;45288;45289 45284 13 QSGESIDIITR FILTAKYNACILEYKQSGESIDIITRAHGN LEYKQSGESIDIITRAHGNVQDRIGRPSET K Q S T R A 0 1 0 1 0 1 1 1 0 3 0 0 0 0 0 2 1 0 0 0 0 0 11 0 1217.6252 Q16531;F5GY55;B7Z2A1;F5H2L3;F5GWI0;F5GZY8;F5GYG8 Q16531 93 103 DDB1 DNA damage-binding protein 1 yes no 2 0.00083921 81.865 2 2 0.85812 0.80918 22.978 4 Median 0.60594 0.65384 7.1478 2 0 Median 1.1849 0.96661 2.1443 2 0 Median 99654000 58120000 41534000 73941000 46908000 27033000 25713000 11212000 14500000 10979 1770 11279 28982;28983;28984;28985 45290;45291;45292;45293;45294;45295 45292 6 QSILNSLSR VLAVIQVCLEGEISRQSILNSLSRGKKASG EGEISRQSILNSLSRGKKASGDLIPWTVSE R Q S S R G 0 1 1 0 0 1 0 0 0 1 2 0 0 0 0 3 0 0 0 0 0 0 9 0 1016.5615 Q9H0A0;A0A087WV29 Q9H0A0 588 596 NAT10 N-acetyltransferase 10 yes no 2 1.5204E-08 122.13 3 2 1.2585 1.0783 4.149 3 Median 0.88554 1.0142 NaN 1 0 Median 1.2628 1.088 1.2645 2 0 Median 141150000 54909000 86243000 73636000 26804000 46831000 67516000 28105000 39411000 10980 2023 11280 28986;28987;28988;28989;28990 45296;45297;45298;45299;45300;45301;45302 45297 7 QSLEASLAETEGR VQALEIELQSQLALKQSLEASLAETEGRYC LKQSLEASLAETEGRYCVQLSQIQAQISAL K Q S G R Y 2 1 0 0 0 1 3 1 0 0 2 0 0 0 0 2 1 0 0 0 0 0 13 0 1389.6736 CON__P13645;P13645;CON__P02535-1 CON__P13645 387 399 KRT10 Keratin, type I cytoskeletal 10 yes no 2 1.6322E-48 178.53 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158100000 158100000 0 114330000 114330000 0 43765000 43765000 0 + 10981 1161 11281 28991;28992;28993 45303;45304;45305;45306 45304 4 QSLETICLLLAYK ESNYLFLGDYVDRGKQSLETICLLLAYKIK GKQSLETICLLLAYKIKYPENFFLLRGNHE K Q S Y K I 1 0 0 0 1 1 1 0 0 1 4 1 0 0 0 1 1 0 1 0 0 0 13 0 1550.8378 P62136;A0A140VJS9;B3KXM2;E9PMD7;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 P62136 99 111 PPP1CA;PPP1CC;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 0.00021073 69.979 1 2 2.4731 1.9214 24.098 3 Plateau 1.2532 1.2672 NaN 1 0 Median 2.406 1.9236 0.16542 2 0 Median 34074000 11214000 22860000 8819900 4042200 4777700 25254000 7171400 18083000 10982 1632;343;1633 11282 28994;28995;28996 45307;45308;45309 45307 3 QSLEYLEQVR RAALGRMCTVIKRQKQSLEYLEQVRQHLSR IKRQKQSLEYLEQVRQHLSRLPTIDPNTRT K Q S V R Q 0 1 0 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1263.6459 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747;Q5T3R7 Q8N4P8 144 153 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 3.5724E-08 118.71 2 2 1.5703 1.5327 14.065 4 Median 1.2078 1.327 9.364 2 0 Median 1.9415 1.6616 0.40855 2 0 Median 147710000 60082000 87626000 94502000 41821000 52682000 53206000 18261000 34945000 10983 1183 11283 28997;28998;28999;29000 45310;45311;45312;45313;45314 45311 5 QSLGHGQHGSGSGQSPSPSR SGSSSSYGQHGSGSRQSLGHGQHGSGSGQS GQHGSGSGQSPSPSRGRHGSGSGQSSSYGP R Q S S R G 0 1 0 0 0 3 0 5 2 0 1 0 0 0 2 6 0 0 0 0 0 0 20 0 1946.8943 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 992 1011 HRNR Hornerin yes no 3 2.0773E-05 50.055 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6031300 6031300 0 3160500 3160500 0 2870800 2870800 0 + 10984 1179 11284 29001;29002;29003 45315;45316;45317 45315 3 QSLPPGLAVK YTLVITDKEKAEKLKQSLPPGLAVKELK__ AEKLKQSLPPGLAVKELK____________ K Q S V K E 1 0 0 0 0 1 0 1 0 0 2 1 0 0 2 1 0 0 0 1 0 0 10 0 1008.5968 A0A024R8P8;P63173 A0A024R8P8 58 67 RPL38 60S ribosomal protein L38 yes no 2 0.0055366 66.692 2 1 1.2277 1.1009 4.4377 2 Median 1.0563 1.0669 NaN 1 0 Median 1.427 1.136 NaN 1 0 Median 51798000 15688000 36110000 45095000 12887000 32208000 6703200 2800700 3902500 10985 253 11285 29004;29005;29006 45318;45319;45320;45321;45322 45320 5 QSMWSLLTALSGK HYAKTAKKMDMKKLKQSMWSLLTALSGKEA LKQSMWSLLTALSGKEADAEANHREAGKEA K Q S G K E 1 0 0 0 0 1 0 1 0 0 3 1 1 0 0 3 1 1 0 0 0 0 13 0 1420.7384 A8K4T8;Q15003;B4DRG7;E9PHA2;H7C415 A8K4T8 649 661 NCAPH Condensin complex subunit 2 yes no 2 0.0074284 45.077 1 0.50331 0.50989 NaN 1 Median 0.50331 0.50989 NaN 1 0 Median NaN NaN NaN 0 0 Median 5297500 3606800 1690700 5297500 3606800 1690700 0 0 0 10986 740 11286 29007 45323;45324 45324 2 QSNASSDVEVEEK NNPKVKFSSQQAATKQSNASSDVEVEEKET TKQSNASSDVEVEEKETSVSKEDTDHEEKA K Q S E K E 1 0 1 1 0 1 3 0 0 0 0 1 0 0 0 3 0 0 0 2 0 0 13 0 1420.6318 O75475;Q05CM9 O75475 101 113 PSIP1 PC4 and SFRS1-interacting protein yes no 2 0.00012183 77.387 1 0.61122 0.61832 NaN 1 Median 0.61122 0.61832 NaN 1 0 Median NaN NaN NaN 0 0 Median 6821900 4060500 2761400 6821900 4060500 2761400 0 0 0 10987 1405 11287 29008 45325 45325 1 QSPLGFEVHDEITVTR TKASVSITFDNSDKKQSPLGFEVHDEITVT SPLGFEVHDEITVTRQVVIGGRNKYLINGV K Q S T R Q 0 1 0 1 0 1 2 1 1 1 1 0 0 1 1 1 2 0 0 2 0 0 16 0 1826.9163 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 90 105 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 4.6816E-05 63.145 3 3 1.1937 1.1605 23.522 4 Median 0.85799 0.97064 9.8508 2 0 Median 1.6807 1.4128 12.407 2 0 Median 291830000 141300000 150530000 231350000 124360000 106990000 60475000 16941000 43534000 10988 69 11288 29009;29010;29011;29012;29013;29014 45326;45327;45328;45329;45330;45331;45332;45333 45330 8 QSQAINDLLEAIYPSVDKR PSLQMDDNLPDVNDKQSQAINDLLEAIYPS INDLLEAIYPSVDKREYIIKLEPIETNQNA K Q S K R E 2 1 1 2 0 2 1 0 0 2 2 1 0 0 1 2 0 0 1 1 0 0 19 1 2159.1222 Q2TB10;B7Z4V7;A0A087WXB4;C9JHX9;Q49A13;C9K0M9;Q4G0T8 Q2TB10 109 127 ZNF800 Zinc finger protein 800 yes no 3 0.0013541 31.48 2 1.7168 1.4518 17.034 2 Median NaN NaN NaN 0 0 Median 1.7168 1.4518 17.034 2 0 Median 8423900 3540900 4882900 0 0 0 8423900 3540900 4882900 10989 1777 11289 29015;29016 45334;45335 45334 2 QSQQEAEEEEREEEEEAQIIQR KLYYDTDYGSKSRGRQSQQEAEEEEREEEE EEEREEEEEAQIIQRRLAQALQEDDFGVAW R Q S Q R R 2 2 0 0 0 5 10 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 22 1 2716.206 Q9NQZ2 Q9NQZ2 149 170 UTP3 Something about silencing protein 10 yes yes 3 6.0894E-12 96.379 3 2 1.0534 1.035 5.3355 4 Median 0.94049 1.0508 7.7924 2 0 Median 1.1854 1.035 4.733 2 0 Median 155210000 75579000 79635000 89354000 46126000 43228000 65860000 29453000 36407000 10990 2063 11290 29017;29018;29019;29020;29021 45336;45337;45338;45339;45340;45341;45342;45343;45344 45338 9 QSSSTNYTNELK SIKDRMAKYQAAVSKQSSSTNYTNELKASG VSKQSSSTNYTNELKASGGEIKIHKMEQKE K Q S L K A 0 0 2 0 0 1 1 0 0 0 1 1 0 0 0 3 2 0 1 0 0 0 12 0 1370.6314 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VRN8 F8VQE1 121 132 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.023957 49.777 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11009000 0 11009000 0 0 0 11009000 0 11009000 10991 1010 11291 29022 45345 45345 1 QSSVTQVTEQSPK RWDDEPHISASVAVKQSSVTQVTEQSPKVQ VKQSSVTQVTEQSPKVQSRYTKESASSILA K Q S P K V 0 0 0 0 0 3 1 0 0 0 0 1 0 0 1 3 2 0 0 2 0 0 13 0 1417.7049 Q14966;D6W5H1;A8K583;A0A096LPH6;B4DF54;C9JWN0 Q14966 118 130 ZNF638 Zinc finger protein 638 yes no 2 0.001183 76.143 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10992 1746 11292 29023 45346 45346 1 QSVEADINGLR ADDFRLKYENEVALRQSVEADINGLRRVLD VALRQSVEADINGLRRVLDELTLTKADLEM R Q S L R R 1 1 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1200.6099 CON__P13645;P13645;CON__P02535-1 CON__P13645 246 256 KRT10 Keratin, type I cytoskeletal 10 no no 2 5.1511E-05 99.013 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23084000 23084000 0 16222000 16222000 0 6862000 6862000 0 + 10993 1161 11293 29024;29025 45347;45348 45348 2 QSVEADINGLRR ADDFRLKYENEVALRQSVEADINGLRRVLD ALRQSVEADINGLRRVLDELTLTKADLEMQ R Q S R R V 1 2 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 12 1 1356.711 CON__P13645;P13645;CON__P02535-1 CON__P13645 246 257 KRT10 Keratin, type I cytoskeletal 10 no no 2;3 0.0038572 65.157 1 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109010000 109010000 0 55077000 55077000 0 53929000 53929000 0 + 10994 1161 11294 29026;29027;29028;29029 45349;45350;45351;45352 45351 4 QSVENDIHGLR ADDFRVKYETELAMRQSVENDIHGLRKVID LAMRQSVENDIHGLRKVIDDTNITRLQLET R Q S L R K 0 1 1 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1266.6317 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 176 186 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 3.4594E-23 167.93 4 0.98438 1.1247 1.2045 4 Median 0.98438 1.1247 1.2045 4 0 Median NaN NaN NaN 0 0 Median 442670000 213060000 229610000 442670000 213060000 229610000 0 0 0 10995 316 11295 29030;29031;29032;29033 45353;45354;45355;45356;45357;45358;45359 45359 7 QSVENDIHGLRK ADDFRVKYETELAMRQSVENDIHGLRKVID AMRQSVENDIHGLRKVIDDTNITRLQLETE R Q S R K V 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1394.7266 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 176 187 KRT18 Keratin, type I cytoskeletal 18 yes no 3 0.00026206 62.14 2 1 1.1897 1.408 21.215 3 Median 1.0859 1.2752 14.009 2 0 Median 2.105 1.7648 NaN 1 0 Median 86715000 38709000 48005000 83352000 37618000 45734000 3362300 1090700 2271600 10996 316 11296 29034;29035;29036 45360;45361;45362;45363;45364 45363 5 QSVFAILR VQLPESMEDDGLSERQSVFAILRQAELVPA DDGLSERQSVFAILRQAELVPATVNDYREK R Q S L R Q 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 8 0 932.54435 O75691 O75691 673 680 UTP20 Small subunit processome component 20 homolog yes yes 2 0.025562 65.038 1 1 1.5491 1.3431 NaN 1 Median NaN NaN NaN 0 0 Median 1.5491 1.3431 NaN 1 0 Median 2485500 984790 1500700 0 0 0 2485500 984790 1500700 10997 1412 11297 29037;29038 45365;45366 45365 2 QTAAQLILK IAFPSIGSGRNGFPKQTAAQLILKAISSYF RNGFPKQTAAQLILKAISSYFVSTMSSSIK K Q T L K A 2 0 0 0 0 2 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 984.59678 O75367;Q59FH0;B4DJC3 O75367 324 332 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 1.656E-06 136.27 2 2 1.1012 1.1109 17.7 4 Median 1.101 1.301 2.4768 2 0 Median 1.1012 0.95858 1.0098 2 0 Median 1375400000 649710000 725640000 954310000 454280000 500030000 421040000 195430000 225610000 10998 1401 11298 29039;29040;29041;29042 45367;45368;45369;45370;45371;45372;45373;45374;45375;45376 45375 10 QTALYTLK QRKKKEGEEEQAINRQTALYTLKLLCKNFG EEQAINRQTALYTLKLLCKNFGAENPDPFV R Q T L K L 1 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 2 0 1 0 0 0 8 0 936.52803 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1668 1675 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.060096 40.067 1 1.1436 0.93277 NaN 1 Median NaN NaN NaN 0 0 Median 1.1436 0.93277 NaN 1 0 Median 7824700 3640600 4184000 0 0 0 7824700 3640600 4184000 10999 897 11299 29043 45377 45377 1 QTAPSGLSTLPQR ______________________________ GRQTAPSGLSTLPQRVLRKEPVTPSALVLM R Q T Q R V 1 1 0 0 0 2 0 1 0 0 2 0 0 0 2 2 2 0 0 0 0 0 13 0 1354.7205 B2RC06;Q96GD4;J3KTD6;J3KRF8 Q96GD4 15 27 AURKB Aurora kinase B no no 2 6.8805E-09 118.28 2 0.99538 1.1339 NaN 1 Median 0.99538 1.1339 NaN 1 0 Median NaN NaN NaN 0 0 Median 167030000 61292000 105740000 167030000 61292000 105740000 0 0 0 11000 881;1967 11300 29044;29045 45378;45379;45380 45379 3 QTASVTLQAIAAQNAAVQAVNAHSNILK VKIESLAKSLEDALRQTASVTLQAIAAQNA NAAVQAVNAHSNILKAAMDNSEIAGEKKSA R Q T L K A 8 0 3 0 0 4 0 0 1 2 2 1 0 0 0 2 2 0 0 3 0 0 28 0 2831.5254 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DT20;Q05DN3 Q16891 230 257 IMMT MICOS complex subunit MIC60 no no 3 0.0041242 23.149 1 1.8657 1.4904 NaN 1 Median NaN NaN NaN 0 0 Median 1.8657 1.4904 NaN 1 0 Median 20295000 7497900 12798000 0 0 0 20295000 7497900 12798000 11001 1774;1029;1128 11301 29046 45381 45381 1 QTATQLLK KVPPAINQFTQALDRQTATQLLKLAHKYRP FTQALDRQTATQLLKLAHKYRPETKQEKKQ R Q T L K L 1 0 0 0 0 2 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 8 0 901.52328 P62424;Q5T8U3 P62424 90 97 RPL7A 60S ribosomal protein L7a yes no 2 0.0035323 96.492 2 2 0.83252 0.82483 24.634 4 Median 0.87646 1.021 1.234 2 0 Median 0.79922 0.66659 1.1857 2 0 Median 692670000 369980000 322680000 602430000 320070000 282370000 90234000 49915000 40318000 11002 1648 11302 29047;29048;29049;29050 45382;45383;45384;45385;45386;45387;45388;45389 45382 8 QTDVGITHFR MGHVLIPQSDLRWSKQTDVGITHFRSGMSH LRWSKQTDVGITHFRSGMSHEEDQLIPNLY K Q T F R S 0 1 0 1 0 1 0 1 1 1 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1172.5938 Q6P2Q9;B4DK16 Q6P2Q9 1345 1354 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.02309 33.039 1 0.84167 0.92119 NaN 1 Median 0.84167 0.92119 NaN 1 0 Median NaN NaN NaN 0 0 Median 33268000 17483000 15785000 33268000 17483000 15785000 0 0 0 11003 1854 11303 29051 45390 45390 1 QTELFAHFIQPAAQK KMQTDRANRFEYLLKQTELFAHFIQPAAQK QTELFAHFIQPAAQKTPTSPLKMKPGRPRI K Q T Q K T 3 0 0 0 0 3 1 0 1 1 1 1 0 2 1 0 1 0 0 0 0 0 15 0 1727.8995 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 98 112 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 3 0.0084754 40.941 2 1 4.6825 3.7021 NaN 1 Median NaN NaN NaN 0 0 Median 4.6825 3.7021 NaN 1 0 Median 54393000 1981100 52412000 43827000 0 43827000 10566000 1981100 8584600 11004 1391 11304 29052;29053;29054 45391;45392;45393 45391 3 QTFEAAILTQLHPR PHGDRKSCEMGLQLRQTFEAAILTQLHPRS RQTFEAAILTQLHPRSQIDIYVQVLQADGG R Q T P R S 2 1 0 0 0 2 1 0 1 1 2 0 0 1 1 0 2 0 0 0 0 0 14 0 1623.8733 Q9NPD3;E9PI41 Q9NPD3 105 118 EXOSC4 Exosome complex component RRP41 yes no 3 0.0023321 39.947 2 1 0.9441 0.87713 2.1675 2 Median 0.88048 0.89067 NaN 1 0 Median 1.0123 0.86379 NaN 1 0 Median 17738000 10591000 7146800 13198000 8511100 4686600 4540200 2080000 2460200 11005 2056 11305 29055;29056;29057 45394;45395;45396 45395 3 QTFLLQTTK YTTSANRAKLLAKNRQTFLLQTTKLTRLAR LLAKNRQTFLLQTTKLTRLARRMCRDLLQP R Q T T K L 0 0 0 0 0 2 0 0 0 0 2 1 0 1 0 0 3 0 0 0 0 0 9 0 1078.6023 A0A024R534;O94776 A0A024R534 452 460 MTA2 Metastasis-associated protein MTA2 yes no 2 0.00013184 113.74 1 1 1.177 1.0952 50.002 2 Median 0.73126 0.76905 NaN 1 0 Median 1.8945 1.5598 NaN 1 0 Median 45471000 23033000 22438000 35022000 19580000 15442000 10449000 3453500 6995100 11006 168 11306 29058;29059 45397;45398;45399 45399 3 QTIQYIHPADAVK FNKAVIRVNVFREHRQTIQYIHPADAVKLG HRQTIQYIHPADAVKLGQAELVVIDEAAAI R Q T V K L 2 0 0 1 0 2 0 0 1 2 0 1 0 0 1 0 1 0 1 1 0 0 13 0 1482.7831 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 366 378 NAT10 N-acetyltransferase 10 no no 2;3 1.1645E-09 145.28 3 3 1.17 1.1075 3.6291 6 Median 0.97296 1.0856 1.9926 3 0 Median 1.4327 1.1199 2.8919 3 0 Median 265430000 128610000 136820000 212510000 106410000 106100000 52920000 22200000 30721000 11007 2023;1687 11307 29060;29061;29062;29063;29064;29065 45400;45401;45402;45403;45404;45405;45406;45407;45408 45400 8 QTLAAFVPLLLK ELIRGICEMELLDGKQTLAAFVPLLLKVCN DGKQTLAAFVPLLLKVCNNPGLYSNPDLSA K Q T L K V 2 0 0 0 0 1 0 0 0 0 4 1 0 1 1 0 1 0 0 1 0 0 12 0 1312.8119 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 1009 1020 NCAPD2 Condensin complex subunit 1 yes no 2 1.3751E-12 128.86 2 1 0.94975 1.0549 14.032 3 Median 0.94001 1.0285 3.5882 2 0 Median 1.574 1.3062 NaN 1 0 Median 119850000 55778000 64076000 83719000 43843000 39875000 36136000 11935000 24201000 11008 908 11308 29066;29067;29068 45409;45410;45411;45412;45413 45410 5 QTLENERGELANEVK LEQTKRVKANLEKAKQTLENERGELANEVK QTLENERGELANEVKVLLQGKGDSEHKRKK K Q T V K V 1 1 2 0 0 1 4 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 15 1 1728.8642 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1220 1234 MYH9 Myosin-9 yes no 2;3 7.7351E-16 130.44 4 2 2.0628 2.1875 9.1207 5 Median 1.684 2.0143 6.9817 3 0 Median 2.7045 2.3125 7.8573 2 0 Median 146330000 44774000 101560000 119820000 38216000 81601000 26517000 6558600 19958000 11009 81 11309 29069;29070;29071;29072;29073;29074 45414;45415;45416;45417;45418;45419 45417 6 QTLPYSVADLEWDAGHK ALKKGPNAKALQVMKQTLPYSVADLEWDAG LPYSVADLEWDAGHKTNVQQCYCYCGGPGD K Q T H K T 2 0 0 2 0 1 1 1 1 0 2 1 0 0 1 1 1 1 1 1 0 0 17 0 1928.9268 Q9Y483;Q96G26;B4DZG1;B4DZ69;Q7Z534 Q9Y483 180 196 MTF2 Metal-response element-binding transcription factor 2 yes no 3 0.039118 25.995 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3356300 0 3356300 0 0 0 3356300 0 3356300 11010 2143 11310 29075 45420 45420 1 QTLQEDLLR RLNLVEAFVEDAELRQTLQEDLLRRFPDLN EDAELRQTLQEDLLRRFPDLNRLAKKFQRQ R Q T L R R 0 1 0 1 0 2 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1114.5982 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;V9H068;V9H0D5;V9H023;B4DL39;B4DSB9;Q0ZAJ1 V9H019 374 382 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.019936 56.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11011 1237 11311 29076 45421 45421 1 QTLQSEQPLQVAR TGLAPPALWDLAADKQTLQSEQPLQVARCT DKQTLQSEQPLQVARCTKIINADSEDPKYI K Q T A R C 1 1 0 0 0 4 1 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 13 0 1496.7947 A0A140VK70;P35998;Q75L23;C9JLS9;B7Z571 A0A140VK70 85 97 PSMC2 26S protease regulatory subunit 7 yes no 2 6.9708E-21 138.22 2 2 2.165 1.9145 6.3009 2 Median NaN NaN NaN 0 0 Median 2.165 1.9145 6.3009 2 0 Median 15514000 1579900 13934000 11024000 0 11024000 4489600 1579900 2909700 11012 620 11312 29077;29078;29079;29080 45422;45423;45424;45425;45426;45427 45425 6 QTLSTPGTIILGTIPVPK GKMELFSQLFIQAVRQTLSTPGTIILGTIP STPGTIILGTIPVPKGKPLALVEEIRNRKD R Q T P K G 0 0 0 0 0 1 0 2 0 3 2 1 0 0 3 1 4 0 0 1 0 0 18 0 1835.0768 Q5TDE9;Q5TDF0;Q9BSD7 Q5TDE9 131 148 C1orf57;NTPCR Cancer-related nucleoside-triphosphatase yes no 2 0.0018472 36.284 1 1.6171 1.6357 NaN 1 Median 1.6171 1.6357 NaN 1 0 Median NaN NaN NaN 0 0 Median 4753100 1895600 2857500 4753100 1895600 2857500 0 0 0 11013 1826 11313 29081 45428 45428 1 QTLTFFDELHNVGR LAELEEQKIVQAKLKQTLTFFDELHNVGRD KQTLTFFDELHNVGRDHGTGDFRESLVSLV K Q T G R D 0 1 1 1 0 1 1 1 1 0 2 0 0 2 0 0 2 0 0 1 0 0 14 0 1675.8318 A8K1M4;Q9H081 A8K1M4 154 167 MIS12 Protein MIS12 homolog yes no 3 0.0002277 57.136 2 1.0683 0.90714 11.981 2 Median NaN NaN NaN 0 0 Median 1.0683 0.90714 11.981 2 0 Median 5915300 2770900 3144300 0 0 0 5915300 2770900 3144300 11014 704 11314 29082;29083 45429;45430 45430 2 QTMLFSATQTR EEELKQIIKLLPTRRQTMLFSATQTRKVED PTRRQTMLFSATQTRKVEDLARISLKKEPL R Q T T R K 1 1 0 0 0 2 0 0 0 0 1 0 1 1 0 1 3 0 0 0 0 0 11 0 1282.634 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452;Q59FR7 Q4ZG72 235 245 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.00048456 74.841 2 3 1.5504 1.3017 23.064 3 Median NaN NaN NaN 0 0 Median 1.5504 1.3017 23.064 3 0 Median 33679000 5172300 28507000 20030000 0 20030000 13648000 5172300 8476100 11015 303 11315;11316 29084;29085;29086;29087;29088 45431;45432;45433;45434;45435;45436;45437 45437 224 7 QTNLENLDQAFSVAER HRHKPLLIDMNKVYRQTNLENLDQAFSVAE TNLENLDQAFSVAERDLGVTRLLDPEDVDV R Q T E R D 2 1 2 1 0 2 2 0 0 0 2 0 0 1 0 1 1 0 0 1 0 0 16 0 1833.8857 Q15149;E9PMV1 Q15149 350 365 PLEC Plectin yes no 2 0.0069889 51.546 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5665000 0 5665000 5665000 0 5665000 0 0 0 11016 1754 11317 29089 45438 45438 1 QTPAPAASVTGSR AGEDKGIKALKESAKQTPAPAASVTGSRRR AKQTPAPAASVTGSRRRPRAPRESAQAIED K Q T S R R 3 1 0 0 0 1 0 1 0 0 0 0 0 0 2 2 2 0 0 1 0 0 13 0 1241.6364 P46013 P46013 2772 2784 MKI67 Antigen KI-67 yes yes 2 2.8703E-15 130.56 2 2 2.9448 2.5554 0.50807 2 Median NaN NaN NaN 0 0 Median 2.9448 2.5554 0.50807 2 0 Median 332340000 39227000 293110000 184410000 0 184410000 147930000 39227000 108700000 11017 1569 11318 29090;29091;29092;29093 45439;45440;45441;45442;45443 45440 5 QTPDFHTVIGDTVTGLLER EKHIEVEVRKFLALKQTPDFHTVIGDTVTG FHTVIGDTVTGLLERCKAEPSFYPRNCLMQ K Q T E R C 0 1 0 2 0 1 1 2 1 1 2 0 0 1 1 0 4 0 0 2 0 0 19 0 2098.0695 Q9H8H0;J3QR28 Q9H8H0 425 443 NOL11 Nucleolar protein 11 yes no 3 9.5738E-07 58.848 2 2 1.0459 1.0151 5.5443 4 Median 0.87676 0.97473 1.9448 2 0 Median 1.2426 1.0654 3.0488 2 0 Median 163450000 81960000 81492000 103370000 54863000 48505000 60084000 27098000 32986000 11018 2042 11319 29094;29095;29096;29097 45444;45445;45446;45447;45448 45446 5 QTPNDLTGEHSCIMLK LKFWKRAGFVPVYLRQTPNDLTGEHSCIML TPNDLTGEHSCIMLKTLTDEDEADQGGWLA R Q T L K T 0 0 1 1 1 1 1 1 1 1 2 1 1 0 1 1 2 0 0 0 0 0 16 0 1842.8604 Q9H0A0;A0A087WV29 Q9H0A0 735 750 NAT10 N-acetyltransferase 10 yes no 3 9.5781E-05 51.591 1 1 1.3068 1.1524 6.3154 2 Median 1.1041 1.1021 NaN 1 0 Median 1.5467 1.2051 NaN 1 0 Median 18263000 8403200 9859900 14665000 7043400 7621600 3598100 1359800 2238300 11019 2023 11320;11321 29098;29099 45449;45450 45449 1862 2 QTQATTLVHQIFGGYLR AMQKACLNGCAKLDRQTQATTLVHQIFGGY QATTLVHQIFGGYLRSRVKCSVCKSVSDTY R Q T L R S 1 1 0 0 0 3 0 2 1 1 2 0 0 1 0 0 3 0 1 1 0 0 17 0 1932.0217 A0A024R8V6;Q9P275;A0A075B784;E9PEW0;Q9H9C5;K7EMM6 A0A024R8V6 234 250 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 0.00025467 45.14 1 2 1.2784 1.0625 1.7025 2 Median NaN NaN NaN 0 0 Median 1.2784 1.0625 1.7025 2 0 Median 22235000 7361900 14873000 5009100 0 5009100 17226000 7361900 9864400 11020 260 11322 29100;29101;29102 45451;45452;45453;45454;45455;45456 45456 6 QTTLAFK LEKKQKREPGTKTKKQTTLAFKPIKKGKKR EPGTKTKKQTTLAFKPIKKGKKRNPWSDSE K Q T F K P 1 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 7 0 807.44905 P11388 P11388 1277 1283 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.058932 50.966 1 1.3407 1.1054 NaN 1 Median NaN NaN NaN 0 0 Median 1.3407 1.1054 NaN 1 0 Median 12055000 5579400 6475700 0 0 0 12055000 5579400 6475700 11021 1471 11323 29103 45457 45457 1 QTTLAFKPIK LEKKQKREPGTKTKKQTTLAFKPIKKGKKR TKTKKQTTLAFKPIKKGKKRNPWSDSESDR K Q T I K K 1 0 0 0 0 1 0 0 0 1 1 2 0 1 1 0 2 0 0 0 0 0 10 1 1145.6808 P11388 P11388 1277 1286 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 0.0023627 79.906 3 0.72305 0.84349 3.6171 3 Median 0.72305 0.84349 3.6171 3 0 Median NaN NaN NaN 0 0 Median 341150000 176130000 165020000 341150000 176130000 165020000 0 0 0 11022 1471 11324 29104;29105;29106 45458;45459;45460;45461;45462 45462 5 QTTLAFKPIKK LEKKQKREPGTKTKKQTTLAFKPIKKGKKR KTKKQTTLAFKPIKKGKKRNPWSDSESDRS K Q T K K G 1 0 0 0 0 1 0 0 0 1 1 3 0 1 1 0 2 0 0 0 0 0 11 2 1273.7758 P11388 P11388 1277 1287 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0090911 49.35 1 1.2777 1.1967 NaN 1 Median NaN NaN NaN 0 0 Median 1.2777 1.1967 NaN 1 0 Median 27317000 11320000 15997000 0 0 0 27317000 11320000 15997000 11023 1471 11325 29107 45463;45464 45463 2 QTVADQVLVGSYCVFSNQGGLVHPK TEEILADVLKVEVFRQTVADQVLVGSYCVF SYCVFSNQGGLVHPKTSIEDQDELSSLLQV R Q T P K T 1 0 1 1 1 3 0 3 1 0 2 1 0 1 1 2 1 0 1 5 0 0 25 0 2702.3486 P56537 P56537 140 164 EIF6 Eukaryotic translation initiation factor 6 yes yes 3 2.8656E-16 90.084 2 1 1.1617 0.98647 2.9051 3 Plateau 0.9535 1.0082 3.7029 2 0 Median 1.1617 0.98647 NaN 1 0 Median 107310000 50364000 56947000 35645000 17498000 18147000 71667000 32866000 38801000 11024 1619 11326 29108;29109;29110 45465;45466;45467;45468;45469;45470 45470 6 QTVAVGVIK SDYPPLGRFAVRDMRQTVAVGVIKAVDKKA AVRDMRQTVAVGVIKAVDKKAAGAGKVTKS R Q T I K A 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 3 0 0 9 0 913.55967 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q9NZS6;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q05639;Q14222;Q2F837;Q96EB3;Q53HR1 Q6IPT9 431 439 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2 0.0066845 63.565 2 2 2.5352 3.0679 40.588 4 Linear 2.4785 2.9505 4.0855 2 0 Median 1.6965 1.4627 1.343 2 0 Median 2587600000 735000000 1852600000 2332900000 637670000 1695200000 254740000 97329000 157420000 11025 1658;1790 11327 29111;29112;29113;29114 45471;45472;45473;45474;45475;45476;45477;45478 45472 8 QTVEADVNGLR ADDFRTKYEHELALRQTVEADVNGLRRVLD LALRQTVEADVNGLRRVLDELTLARTDLEM R Q T L R R 1 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1200.6099 CON__P08779;P08779 CON__P08779 214 224 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.0030924 67.334 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 11026 1159 11328 29115 45479 45479 1 QTYFLPVIGLVDAEK SQRKGKCAVIKTSTRQTYFLPVIGLVDAEK QTYFLPVIGLVDAEKLKPGDLVGVNKDSYL R Q T E K L 1 0 0 1 0 1 1 1 0 1 2 1 0 1 1 0 1 0 1 2 0 0 15 0 1691.9134 E9PM69;R4GNH3;A0A140VK42;P17980;A8K781;E9PKD5;E9PMD8;E9PLG2 E9PM69 88 102 PSMC3 26S protease regulatory subunit 6A yes no 2 0.00021022 75.819 1 2.3518 2.4152 NaN 1 Median 2.3518 2.4152 NaN 1 0 Median NaN NaN NaN 0 0 Median 9486600 2361200 7125400 9486600 2361200 7125400 0 0 0 11027 617 11329 29116 45480 45480 1 QTYSTEPNNLK MVVRNCSSFLIKRNKQTYSTEPNNLKARNS KRNKQTYSTEPNNLKARNSFRYNGLIHRKT K Q T L K A 0 0 2 0 0 1 1 0 0 0 1 1 0 0 1 1 2 0 1 0 0 0 11 0 1293.6201 P46779;H0YKD8;H0YLP6;H0YMF4;Q59F34 P46779 23 33 RPL28 60S ribosomal protein L28 yes no 2 5.3894E-53 211.56 3 2 0.87607 0.84199 15.012 5 Median 0.86459 1.0181 18.977 3 0 Plateau 0.94173 0.81085 5.3294 2 0 Median 930470000 492660000 437810000 692390000 367000000 325390000 238080000 125660000 112420000 11028 1572 11330 29117;29118;29119;29120;29121 45481;45482;45483;45484;45485;45486;45487;45488;45489 45484 9 QVAITGQLGVKPQTGNSIPLTATNFR TAAVIQNVTGQNIIKQVAITGQLGVKPQTG PQTGNSIPLTATNFRIQGKDVLRLPPSSIT K Q V F R I 2 1 2 0 0 3 0 3 0 2 2 1 0 1 2 1 4 0 0 2 0 0 26 1 2710.4766 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 921 946 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 0.0014528 28.951 2 1.0397 0.94526 NaN 1 Median NaN NaN NaN 0 0 Median 1.0397 0.94526 NaN 1 0 Median 3304600 773760 2530800 0 0 0 3304600 773760 2530800 11029 135 11331 29122;29123 45490;45491 45490 2 QVATFHNQR MFASLFPHNPQFIGRQVATFHNQRDYIFFR PQFIGRQVATFHNQRDYIFFRFHRYIFRSE R Q V Q R D 1 1 1 0 0 2 0 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 9 0 1099.5523 Q9H9Y2 Q9H9Y2 277 285 RPF1 Ribosome production factor 1 yes yes 2 0.015594 62.338 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3945800 3945800 0 3945800 3945800 0 0 0 0 11030 2048 11332 29124 45492 45492 1 QVCQLPGLFSYAQHIASIDGR YEPLPPTIGRNIFGRQVCQLPGLFSYAQHI GLFSYAQHIASIDGRRGLFTGLTPRLCSGV R Q V G R R 2 1 0 1 1 3 0 2 1 2 2 0 0 1 1 2 0 0 1 1 0 0 21 0 2359.1743 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 47 67 MTCH2 Mitochondrial carrier homolog 2 yes no 3 6.5454E-13 83.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4596300 0 4596300 4596300 0 4596300 0 0 0 11031 2152 11333 29125 45493 45493 1 QVDLIDLVR AAAQLLESSVQNLFKQVDLIDLVRWKILKD VQNLFKQVDLIDLVRWKILKDKHIPQFLQE K Q V V R W 0 1 0 2 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1069.6132 Q9UKN8;Q05CN7 Q9UKN8 536 544 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.0054623 74.301 2 0.70455 0.7175 NaN 1 Median 0.70455 0.7175 NaN 1 0 Median NaN NaN NaN 0 0 Median 9600500 2629200 6971300 9600500 2629200 6971300 0 0 0 11032 2107 11334 29126;29127 45494;45495 45494 2 QVETEEAGVVTTATASVNLK TPKAARRGRKRKAEKQVETEEAGVVTTATA EAGVVTTATASVNLKVSPKRGRPAATEVKI K Q V L K V 3 0 1 0 0 1 3 1 0 0 1 1 0 0 0 1 4 0 0 4 0 0 20 0 2046.0481 O75475;Q05CM9 O75475 156 175 PSIP1 PC4 and SFRS1-interacting protein yes no 2 2.0941E-17 114.64 2 1 0.93782 0.84881 10.858 2 Median 0.7462 0.78608 NaN 1 0 Median 1.1786 0.91655 NaN 1 0 Median 28925000 16157000 12768000 16408000 10191000 6217300 12516000 5965500 6550700 11033 1405 11335 29128;29129;29130 45496;45497;45498;45499;45500 45497 5 QVFGTHTTQK LNRNGDYKETQYSFKQVFGTHTTQKELFDV QYSFKQVFGTHTTQKELFDVVANPLVNDLI K Q V Q K E 0 0 0 0 0 2 0 1 1 0 0 1 0 1 0 0 3 0 0 1 0 0 10 0 1145.5829 H7BYN4;Q02241;H0YME6;H0YMJ4 H7BYN4 77 86 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.0038894 62.463 1 1.5912 1.2615 NaN 1 Median NaN NaN NaN 0 0 Median 1.5912 1.2615 NaN 1 0 Median 4690400 1842500 2848000 0 0 0 4690400 1842500 2848000 11034 1312 11336 29131 45501;45502 45501 2 QVFTNAEVYNCR CGSYRSVQEFLTDMKQVFTNAEVYNCRGSH DMKQVFTNAEVYNCRGSHVLSCMVKTEQCL K Q V C R G 1 1 2 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 1 2 0 0 12 0 1499.6827 Q9UIG0 Q9UIG0 1410 1421 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 5.3289E-11 117.01 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11035 2103 11337 29132;29133 45503;45504 45503 2 QVHPDTGISSK SRKESYSVYVYKVLKQVHPDTGISSKAMGI KVLKQVHPDTGISSKAMGIMNSFVNDIFER K Q V S K A 0 0 0 1 0 1 0 1 1 1 0 1 0 0 1 2 1 0 0 1 0 0 11 0 1167.5884 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;A0A024RCL8;B4DR52;P57053;O60814;Q0D2M2;Q16778;P33778;P23527;A0A024RCJ2;P06899;Q8N257 B2R4S9 48 58 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2;3 1.7301E-151 257.4 10 9 0.86034 0.81037 15.563 8 Median 0.85176 0.9061 10.699 5 0 Median 0.87159 0.6906 3.4878 3 0 Median 14814000000 11571000000 3243100000 11795000000 9611500000 2183500000 3018600000 1959000000 1059500000 11036 34;1513 11338 29134;29135;29136;29137;29138;29139;29140;29141;29142;29143;29144;29145;29146;29147;29148;29149;29150;29151;29152 45505;45506;45507;45508;45509;45510;45511;45512;45513;45514;45515;45516;45517;45518;45519;45520;45521;45522;45523;45524;45525;45526;45527;45528;45529;45530;45531;45532;45533;45534;45535;45536;45537;45538 45518 34 QVLDNLTMEK QNLRQGVDADINGLRQVLDNLTMEKSDLEM INGLRQVLDNLTMEKSDLEMQYETLQEELM R Q V E K S 0 0 1 1 0 1 1 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 10 0 1189.6013 CON__P35527;P35527;K7EQQ3 CON__P35527 262 271 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.0032684 62.823 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159800000 159800000 0 146310000 146310000 0 13488000 13488000 0 + 11037 1165 11339 29153;29154 45539;45540 45540 880 2 QVLVAPGNAGTACSEK EHTLAWKLAQSHHVKQVLVAPGNAGTACSE VLVAPGNAGTACSEKISNTAISISDHTALA K Q V E K I 3 0 1 0 1 1 1 2 0 0 1 1 0 0 1 1 1 0 0 2 0 0 16 0 1600.7879 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;C9JZG2;C9JKQ7 Q3B7A7 29 44 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.0057582 35.737 1 1.5165 1.228 NaN 1 Median NaN NaN NaN 0 0 Median 1.5165 1.228 NaN 1 0 Median 2589900 1173700 1416200 0 0 0 2589900 1173700 1416200 11038 1507 11340 29155 45541;45542 45541 2 QVPFNEVR DSLTVVFENNWQPERQVPFNEVRLPPPPDI NNWQPERQVPFNEVRLPPPPDIKKEISEGD R Q V V R L 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 8 0 987.51378 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;C9JAJ4 A0A0F7KYT8 41 48 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.031577 58.782 1 1.0509 1.1766 NaN 1 Median 1.0509 1.1766 NaN 1 0 Median NaN NaN NaN 0 0 Median 44999000 17838000 27161000 44999000 17838000 27161000 0 0 0 11039 531 11341 29156 45543;45544 45544 2 QVPLNPDLNQTK KDVSCPIRQVPTGKKQVPLNPDLNQTKPGN GKKQVPLNPDLNQTKPGNFPSLAVSSNEFE K Q V T K P 0 0 2 1 0 2 0 0 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1365.7252 J3QQW9;Q15022 J3QQW9 189 200 SUZ12 Polycomb protein SUZ12 yes no 2 0.0003692 72.006 3 1 0.86967 0.91719 NaN 1 Median 0.86967 0.91719 NaN 1 0 Median NaN NaN NaN 0 0 Median 36513000 13956000 22557000 31146000 13956000 17191000 5366200 0 5366200 11040 1336 11342 29157;29158;29159;29160 45545;45546;45547;45548;45549 45547 5 QVPVSTTVVSTSQAGK ASTPISISTGAPTVRQVPVSTTVVSTSQAG VPVSTTVVSTSQAGKLPTRITVPLSVISQP R Q V G K L 1 0 0 0 0 2 0 1 0 0 0 1 0 0 1 3 3 0 0 4 0 0 16 0 1587.8468 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1164 1179 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.050922 34.386 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 855740 0 855740 0 0 0 855740 0 855740 11041 135 11343 29161 45550 45550 1 QVQQLLGK LKSFLRECKVANYCRQVQQLLGKVQENSAY KVANYCRQVQQLLGKVQENSAYICSRRQRV R Q V G K V 0 0 0 0 0 3 0 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 912.53927 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7;B4DY21 Q9Y3T9 569 576 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.053018 48.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7074200 7074200 0 7074200 7074200 0 0 0 0 11042 2139 11344 29162 45551 45551 1 QVQSLTCEVDALK DALRQAKQESTEYRRQVQSLTCEVDALKGT RRQVQSLTCEVDALKGTNESLERQMREMEE R Q V L K G 1 0 0 1 1 2 1 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 13 0 1489.7446 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 322 334 HEL113;VIM Vimentin yes no 2 4.4973E-14 136.02 2 2 3.1854 2.5849 28.207 3 Median 1.4314 1.6126 NaN 1 0 Median 3.236 2.6265 2.2577 2 0 Median 111150000 37448000 73702000 59379000 25778000 33601000 51771000 11670000 40101000 11043 1457 11345 29163;29164;29165;29166 45552;45553;45554;45555;45556;45557;45558 45554 7 QVQVALETAQR EAERRLRQAEVERARQVQVALETAQRSAEA ERARQVQVALETAQRSAEAELQSKRASFAE R Q V Q R S 2 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1241.6728 Q15149 Q15149 1699 1709 PLEC Plectin yes yes 2 0.0046969 57.55 1 2.8426 2.4906 NaN 1 Median NaN NaN NaN 0 0 Median 2.8426 2.4906 NaN 1 0 Median 1842900 513370 1329500 0 0 0 1842900 513370 1329500 11044 1754 11346 29167 45559 45559 1 QVSDDLTER FDAGELITQRELVSRQVSDDLTERAATFGL RELVSRQVSDDLTERAATFGLILDDVSLTH R Q V E R A 0 1 0 2 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1061.4989 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0 Q6PUJ7 149 157 HEL-S-54e;PHB Prohibitin yes no 2 5.6389E-05 103.83 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66585000 0 66585000 61001000 0 61001000 5584300 0 5584300 11045 730 11347 29168;29169;29170;29171 45560;45561;45562;45563 45560 4 QVSDLISVLR KTGTAYTFFTPNNIKQVSDLISVLREANQA PNNIKQVSDLISVLREANQAINPKLLQLVE K Q V L R E 0 1 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 0 2 0 0 10 0 1128.6503 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 441 450 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0067028 58.433 2 1.4164 1.4413 8.7289 2 Median 1.4164 1.4413 8.7289 2 0 Median NaN NaN NaN 0 0 Median 25281000 10430000 14852000 25281000 10430000 14852000 0 0 0 11046 1009 11348 29172;29173 45564;45565 45564 2 QVSSHIQVLAR ARYIKLRTGKTRTRKQVSSHIQVLARRKSR RTRKQVSSHIQVLARRKSRDFHSKLKDQTA K Q V A R R 1 1 0 0 0 2 0 0 1 1 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1236.6939 H0YE88;P28347;H0YEJ9;H0YGS2;A0A0A0MRF3;Q96G15;Q53GI4;Q71U35;A0A024QZE2;A0A024QZD8;Q15561;Q99594;Q15562;A0A0S2Z4F2;H0YG62;A0A0S2Z4E5;D3DUQ6 H0YE88 89 99 TEAD1;TEAD4;TEAD3;TEAD2 Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4 yes no 3 0.004674 37.426 2 1.0431 0.8767 2.0787 2 Median NaN NaN NaN 0 0 Median 1.0431 0.8767 2.0787 2 0 Median 16340000 8034500 8305200 0 0 0 16340000 8034500 8305200 11047 1291 11349 29174;29175 45566;45567 45567 2 QVTITGSAASISLAQYLINAR AQIKIANPVEGSSGRQVTITGSAASISLAQ SAASISLAQYLINARLSSEKGMGCS_____ R Q V A R L 4 1 1 0 0 2 0 1 0 3 2 0 0 0 0 3 2 0 1 1 0 0 21 0 2176.1852 Q53SS8;Q15365 Q53SS8 326 346 PCBP1 Poly(rC)-binding protein 1 yes no 2 3.8164E-09 85.837 2 1.7325 1.7316 10.638 2 Median 1.7325 1.7316 10.638 2 0 Median NaN NaN NaN 0 0 Median 16159000 6443300 9715200 16159000 6443300 9715200 0 0 0 11048 1759 11350 29176;29177 45568;45569;45570;45571 45568 4 QVTITGSAASISLAQYLINVR AQIKIANPVEGSTDRQVTITGSAASISLAQ SAASISLAQYLINVRLSSETGGMGSS____ R Q V V R L 3 1 1 0 0 2 0 1 0 3 2 0 0 0 0 3 2 0 1 2 0 0 21 0 2204.2165 H3BRU6;F8VZX2;B4DRD7;Q15366;H3BSS4 Q15366 270 290 PCBP2 Poly(rC)-binding protein 2 no no 2 0.010314 37.013 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5983000 0 5983000 5983000 0 5983000 0 0 0 11049 1263;1760 11351 29178;29179 45572;45573 45572 2 QVVEEPSPQLPADR RFPYESWGTPFQQLKQVVEEPSPQLPADRF KQVVEEPSPQLPADRFSPEFVDFTAQCLRK K Q V D R F 1 1 0 1 0 2 2 0 0 0 1 0 0 0 3 1 0 0 0 2 0 0 14 0 1563.7893 C7DUW4;Q6FI23;Q6FHG1;Q53EZ9;P46734;J3KRV4 C7DUW4 280 293 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 2 6.7747E-10 113.63 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3115000 0 3115000 3115000 0 3115000 0 0 0 11050 1124 11352 29180 45574 45574 1 QVVNIPSFIVR HARVLIRQRHIRVRKQVVNIPSFIVRLDSQ RVRKQVVNIPSFIVRLDSQKHIDFSLRSPY K Q V V R L 0 1 1 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 0 3 0 0 11 0 1270.7398 A0A024R4M0;P46781;A5D904 A0A024R4M0 140 150 RPS9 40S ribosomal protein S9 yes no 2 3.5611E-08 119.75 2 2 0.85767 0.86624 22.762 4 Median 0.89141 1.0429 0.020578 2 0 Median 0.80992 0.70396 3.1076 2 0 Median 868850000 472160000 396690000 574100000 308050000 266050000 294750000 164110000 130640000 11051 157 11353 29181;29182;29183;29184 45575;45576;45577;45578;45579;45580 45580 6 QVVQGLLSETYLEAHR SVTGIFLPILRTGFRQVVQGLLSETYLEAH VVQGLLSETYLEAHRIVKMNKSEDDESGAG R Q V H R I 1 1 0 0 0 2 2 1 1 0 3 0 0 0 0 1 1 0 1 2 0 0 16 0 1841.9636 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993 B3KUD7 180 195 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 3 0.002498 62.646 3 2 0.77099 0.7144 5.6006 3 Plateau 0.72594 0.7144 NaN 1 0 Median 0.78865 0.6628 5.0265 2 0 Median 32794000 12031000 20764000 22124000 6372700 15751000 10671000 5658000 5012500 11052 560 11354 29185;29186;29187;29188;29189 45581;45582;45583;45584;45585;45586;45587 45583 7 QVVSAVTALVEAAER ELVALCRSGRAAALRQVVSAVTALVEAAER QVVSAVTALVEAAERQPLQATFRGLRKQVS R Q V E R Q 4 1 0 0 0 1 2 0 0 0 1 0 0 0 0 1 1 0 0 4 0 0 15 0 1541.8413 P58107 P58107 1500 1514 EPPK1 Epiplakin yes yes 2 2.4296E-06 117.23 2 1.321 1.3266 23.807 2 Median 1.321 1.3266 23.807 2 0 Median NaN NaN NaN 0 0 Median 20057000 9725200 10331000 20057000 9725200 10331000 0 0 0 11053 1622 11355 29190;29191 45588;45589;45590;45591 45588 4 QVVTGTVLTR FRLVSRPKPLSAVPKQVVTGTVLTRSVFIN SAVPKQVVTGTVLTRSVFINNVLSKIGEVW K Q V T R S 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 3 0 0 3 0 0 10 0 1072.6241 Q8WYP5;B3KVE5 Q8WYP5 1042 1051 AHCTF1 Protein ELYS yes no 2 0.0096548 54.419 2 1 1.4581 1.5748 21.701 3 Median 1.3677 1.4376 12.895 2 0 Median 2.3796 2.0219 NaN 1 0 Median 71225000 30890000 40335000 62071000 28560000 33511000 9154200 2330100 6824100 11054 1945 11356 29192;29193;29194 45592;45593;45594 45593 3 QVYIPTYTK QQKRLKAAEADSKLKQVYIPTYTKPNPNQI ADSKLKQVYIPTYTKPNPNQIISVGSKPGM K Q V T K P 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 2 0 2 1 0 0 9 0 1111.5914 A0A024R534;O94776 A0A024R534 333 341 MTA2 Metastasis-associated protein MTA2 yes no 2 0.00044654 99.136 2 2 1.1824 1.0896 38.431 4 Median 0.74704 0.77177 5.2625 2 0 Median 1.8509 1.4983 1.5425 2 0 Median 55341000 29025000 26317000 42357000 24458000 17898000 12984000 4566300 8418100 11055 168 11357 29195;29196;29197;29198 45595;45596;45597;45598;45599;45600 45598 6 QWGWTQGR FRRYNGGVGRCAQAKQWGWTQGRWPKKSAE GRCAQAKQWGWTQGRWPKKSAEFLLHMLKN K Q W G R W 0 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 1 2 0 0 0 0 8 0 1017.4781 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 75 82 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2 0.006912 85.212 2 1 0.58363 0.57362 11.91 2 Median 0.45444 0.52729 NaN 1 0 Median 0.74955 0.62402 NaN 1 0 Median 123550000 95678000 27868000 101380000 82781000 18603000 22163000 12897000 9265200 11056 106 11358 29199;29200;29201 45601;45602;45603 45602 3 QWYESHYALPLGR LVKNCIVLIDSTPYRQWYESHYALPLGRKK YRQWYESHYALPLGRKKGAKLTPEEEEILN R Q W G R K 1 1 0 0 0 1 1 1 1 0 2 0 0 0 1 1 0 1 2 0 0 0 13 0 1618.7892 Q5JR94;P62241;Q5JR95 Q5JR94 111 123 RPS8 40S ribosomal protein S8 yes no 2;3 0.00016902 72.006 5 4 0.90172 0.7525 3.9447 5 Median 0.65496 0.7525 NaN 1 0 Median 0.90756 0.76633 4.4055 4 0 Median 159840000 91570000 68275000 93941000 58004000 35937000 65904000 33566000 32338000 11057 1635 11359 29202;29203;29204;29205;29206;29207;29208;29209;29210 45604;45605;45606;45607;45608;45609;45610;45611;45612;45613;45614;45615;45616;45617 45616 14 QYHVQFFGDAPER LHSYTKLKGQKKSARQYHVQFFGDAPERAW ARQYHVQFFGDAPERAWIFEKSLVAFEGEG R Q Y E R A 1 1 0 1 0 2 1 1 1 0 0 0 0 2 1 0 0 0 1 1 0 0 13 0 1592.7372 O96028;Q05CW4;D6R9V2 O96028 261 273 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 0.0037395 39.746 1 1.5988 1.3371 NaN 1 Median NaN NaN NaN 0 0 Median 1.5988 1.3371 NaN 1 0 Median 3826000 1597100 2228900 0 0 0 3826000 1597100 2228900 11058 1435 11360 29211 45618 45618 1 QYIGPPSAAAIFK TEKIDVAFVDRADIKQYIGPPSAAAIFKIY IKQYIGPPSAAAIFKIYLSCLEELMKCQII K Q Y F K I 3 0 0 0 0 1 0 1 0 2 0 1 0 1 2 1 0 0 1 0 0 0 13 0 1361.7343 Q15645 Q15645 317 329 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.0015988 57.174 1 2 1.8311 1.8609 30.655 3 Plateau 1.8311 1.8609 NaN 1 0 Median 1.4097 1.0967 3.9174 2 0 Median 20919000 8053400 12865000 13775000 4701800 9073500 7143400 3351600 3791800 11059 1763 11361 29212;29213;29214 45619;45620;45621 45619 3 QYNQTFETHNSTTPLQER LRSRYLDSLKAIVFKQYNQTFETHNSTTPL QTFETHNSTTPLQERSLGLDINMDSRIIHE K Q Y E R S 0 1 2 0 0 3 2 0 1 0 1 0 0 1 1 1 4 0 1 0 0 0 18 0 2193.0087 Q96H22 Q96H22 208 225 CENPN Centromere protein N yes yes 3 0.0071986 23.726 2 0.97105 0.83526 5.8471 2 Median NaN NaN NaN 0 0 Median 0.97105 0.83526 5.8471 2 0 Median 6301900 3242200 3059700 0 0 0 6301900 3242200 3059700 11060 1970 11362 29215;29216 45622;45623;45624;45625 45622 4 QYQAGQTVTCFLK TALNTHSVSPMEKIKQYQAGQTVTCFLKKY IKQYQAGQTVTCFLKKYNVVKKWLEVEIAP K Q Y L K K 1 0 0 0 1 3 0 1 0 0 1 1 0 1 0 0 2 0 1 1 0 0 13 0 1542.7501 Q14690 Q14690 1145 1157 PDCD11 Protein RRP5 homolog yes yes 2 0.0035417 49.466 1 1.4694 1.1495 NaN 1 Median NaN NaN NaN 0 0 Median 1.4694 1.1495 NaN 1 0 Median 3719100 1444600 2274500 0 0 0 3719100 1444600 2274500 11061 1741 11363 29217 45626 45626 1 QYQIDAAIVR VEEQVSTTERVFQDRQYQIDAAIVRIMKMR VFQDRQYQIDAAIVRIMKMRKTLGHNLLVS R Q Y V R I 2 1 0 1 0 2 0 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 10 0 1175.6299 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 693 702 CUL4A Cullin-4A no no 2 0.00095588 78.516 1 2 0.86063 0.78264 5.973 3 Median 0.79424 0.80135 NaN 1 0 Median 0.88471 0.74835 6.3359 2 0 Median 24169000 13415000 10755000 9521600 5715200 3806400 14648000 7699500 6948200 11062 1718 11364 29218;29219;29220 45627;45628;45629;45630 45627 4 QYYVEAFGDPSER NTHSKMKVSNRRPYRQYYVEAFGDPSERAW YRQYYVEAFGDPSERAWVAGKAIVMFEGRH R Q Y E R A 1 1 0 1 0 1 2 1 0 0 0 0 0 1 1 1 0 0 2 1 0 0 13 0 1559.6892 B2RWP5;Q96L73;Q96MN8;A4QPE5;D6RBV9;D6RA58 B2RWP5 94 106 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.046844 29.936 2 1.3448 1.1713 29.144 2 Median NaN NaN NaN 0 0 Median 1.3448 1.1713 29.144 2 0 Median 2199500 1090000 1109500 0 0 0 2199500 1090000 1109500 11063 898 11365 29221;29222 45631;45632 45631 2 RAADEVLAEAK SAPLEIGLQRSTQVKRAADEVLAEAKKPRI TQVKRAADEVLAEAKKPRIEDEECVRLDKE K R A A K K 4 1 0 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1171.6197 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 126 136 CDC73 Parafibromin yes no 2 0.0092656 62.466 3 2.1485 2.486 NaN 1 Median 2.1485 2.486 NaN 1 0 Median NaN NaN NaN 0 0 Median 32961000 10281000 22680000 32961000 10281000 22680000 0 0 0 11064 1851 11366 29223;29224;29225 45633;45634;45635 45635 3 RAATLAQELEK NQVKKYHRLKEEASKRAATLAQELEKFNRD EASKRAATLAQELEKFNRDQKADQDRLDLE K R A E K F 3 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 11 1 1228.6776 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709;Q68EN4 Q14683 385 395 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0023601 67.726 1 0.92885 1.0087 NaN 1 Median 0.92885 1.0087 NaN 1 0 Median NaN NaN NaN 0 0 Median 15555000 8585700 6968900 15555000 8585700 6968900 0 0 0 11065 1739 11367 29226 45636;45637 45637 2 RAAVQFLNNAWGIQK VNKFLSLANKRLPVKRAAVQFLNNAWGIQK RAAVQFLNNAWGIQKKQNAKRFKRRWMVRK K R A Q K K 3 1 2 0 0 2 0 1 0 1 1 1 0 1 0 0 0 1 0 1 0 0 15 1 1714.9267 A0A024QZW2;Q9UMY1 A0A024QZW2 223 237 NOL7 Nucleolar protein 7 yes no 3 0.00011143 46.797 2 0.83884 0.70575 0.067309 2 Median NaN NaN NaN 0 0 Median 0.83884 0.70575 0.067309 2 0 Median 6758700 3267000 3491700 0 0 0 6758700 3267000 3491700 11066 30 11368 29227;29228 45638;45639 45638 2 RAEDGSVIDYELIDQDAR SGDFRKLMVALAKGRRAEDGSVIDYELIDQ DGSVIDYELIDQDARDLYDAGVKRKGTDVP R R A A R D 2 2 0 4 0 1 2 1 0 2 1 0 0 0 0 1 0 0 1 1 0 0 18 1 2063.976 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YM50;H0YNP5;H0YNA0;H0YN28;H0YL33;B3KRQ1 V9HW65 179 196 HEL-S-270;ANXA2 Annexin;Annexin A2 yes no 3 0.00352 25.888 2 0.65724 0.58504 NaN 1 Median NaN NaN NaN 0 0 Median 0.65724 0.58504 NaN 1 0 Median 2902900 2052600 850300 0 0 0 2902900 2052600 850300 11067 193 11369 29229;29230 45640;45641 45641 2 RAEEFLTASQEAL LPQDVYTIKALEAHKRAEEFLTASQEAL__ HKRAEEFLTASQEAL_______________ K R A A L - 3 1 0 0 0 1 3 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 13 1 1463.7256 B4DSD7;E9PFR3;A8K6Y2;A0A024RD11;Q14738;Q59EF0;H0Y8C4 B4DSD7 547 559 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 2 0.020097 39.917 1 1.0792 0.9467 NaN 1 Median NaN NaN NaN 0 0 Median 1.0792 0.9467 NaN 1 0 Median 1691900 929110 762820 0 0 0 1691900 929110 762820 11068 375 11370 29231 45642 45642 1 RAEEIWQQSVIGDYLAR GGEREERGKLPESPKRAEEIWQQSVIGDYL EEIWQQSVIGDYLARFKNDRVKALKAMEMT K R A A R F 2 2 0 1 0 2 2 1 0 2 1 0 0 0 0 1 0 1 1 1 0 0 17 1 2033.033 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0;E9PLT2 E9PKP7 450 466 UBTF Nucleolar transcription factor 1 yes no 3 1.2297E-07 75.97 2 2 0.84288 0.85111 41.854 4 Median 0.52595 0.58192 7.4429 2 0 Median 1.3722 1.1965 1.8468 2 0 Median 102550000 53640000 48913000 53396000 33841000 19555000 49157000 19799000 29358000 11069 1244 11371 29232;29233;29234;29235 45643;45644;45645;45646;45647 45646 5 RAEFTVETR AYGPGIEPTGNMVKKRAEFTVETRSAGQGE GNMVKKRAEFTVETRSAGQGEVLVYVEDPA K R A T R S 1 2 0 0 0 0 2 0 0 0 0 0 0 1 0 0 2 0 0 1 0 0 9 1 1107.5673 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 301 309 FLNA Filamin-A yes no 2 0.023496 56.043 2 1.3954 1.5506 11.762 2 Median 1.3954 1.5506 11.762 2 0 Median NaN NaN NaN 0 0 Median 96248000 35716000 60531000 96248000 35716000 60531000 0 0 0 11070 1504 11372 29236;29237 45648;45649 45648 2 RAEVSPMYGVQK LFSMFLLYDTQKVIKRAEVSPMYGVQKYDP VIKRAEVSPMYGVQKYDPINSMLSIYMDTL K R A Q K Y 1 1 0 0 0 1 1 1 0 0 0 1 1 0 1 1 0 0 1 2 0 0 12 1 1363.6918 B4DSV8;B4DPG9;Q9H3K2;B4DNL0;Q6FIA7;Q658I8 B4DSV8 288 299 GHITM;DKFZp566C0746 Growth hormone-inducible transmembrane protein yes no 2 0.0076057 56.404 2 2.5918 2.8299 NaN 1 Median 2.5918 2.8299 NaN 1 0 Median NaN NaN NaN 0 0 Median 25904000 4629000 21275000 25904000 4629000 21275000 0 0 0 11071 1021 11373 29238;29239 45650;45651 45650 808 2 RAFDSAVAK QHITLALEKQKLEEKRAFDSAVAKALEHHR QKLEEKRAFDSAVAKALEHHRSEIQAEQDR K R A A K A 3 1 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 9 1 963.51378 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 443 451 IMMT MICOS complex subunit MIC60 no no 2 0.0012857 103.8 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35073000 0 35073000 35073000 0 35073000 0 0 0 11072 1774;1029;1128 11374 29240;29241 45652;45653 45653 2 RAFLIEEQK YGGSMCAKCVRDRIKRAFLIEEQKIVVKVL VRDRIKRAFLIEEQKIVVKVLKAQAQSQKA K R A Q K I 1 1 0 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 9 1 1132.6241 A0A024RDH8;P49207;Q5MK14 A0A024RDH8 93 101 RPL34 60S ribosomal protein L34 yes no 2 2.1579E-11 153.08 2 1 0.89023 0.956 15.463 3 Median 0.84311 1.0197 9.1194 2 0 Median 0.89192 0.79937 NaN 1 0 Median 2294400000 1172300000 1122100000 2207100000 1125300000 1081800000 87287000 47037000 40250000 11073 386 11375 29242;29243;29244 45654;45655;45656;45657;45658 45655 5 RAFVPQLR PSVVKVSYKGSPAARRAFVPQLRSGKFNVL KGSPAARRAFVPQLRSGKFNVLLTTYEYII R R A L R S 1 2 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 1 985.58213 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8 A7E2E1 842 849 SMARCA4 Transcription activator BRG1 yes no 2 0.021429 66.799 1 0.79309 0.89807 NaN 1 Median 0.79309 0.89807 NaN 1 0 Median NaN NaN NaN 0 0 Median 31450000 15407000 16043000 31450000 15407000 16043000 0 0 0 11074 695 11376 29245 45659 45659 1 RAGELTEDEVER YAHVVLRKADIDLTKRAGELTEDEVERVIT LTKRAGELTEDEVERVITIMQNPRQYKIPD K R A E R V 1 2 0 1 0 0 4 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 12 1 1402.6688 P62269 P62269 55 66 RPS18 40S ribosomal protein S18 yes yes 2;3 1.6873E-17 162.68 2 3 1.0098 1.0098 24.407 5 Median 1.0351 1.244 2.9184 2 0 Median 0.97997 0.89814 18.969 3 0 Median 701540000 347730000 353810000 650390000 321950000 328440000 51144000 25775000 25370000 11075 1639 11377 29246;29247;29248;29249;29250 45660;45661;45662;45663;45664;45665;45666 45660 7 RAGFVPVYLR GVSYGLTPRLLKFWKRAGFVPVYLRQTPND LKFWKRAGFVPVYLRQTPNDLTGEHSCIML K R A L R Q 1 2 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 2 0 0 10 1 1176.6768 Q9H0A0;A0A087WV29 Q9H0A0 725 734 NAT10 N-acetyltransferase 10 yes no 3 0.0062342 44.863 2 1 0.99365 1.096 5.8464 3 Median 0.97871 1.0942 0.23411 2 0 Median 1.4145 1.2107 NaN 1 0 Median 49864000 24227000 25637000 43864000 21630000 22234000 5999900 2596800 3403100 11076 2023 11378 29251;29252;29253 45667;45668;45669;45670 45669 4 RAIFATQR DMNKMLDKEDFTMMKRAIFATQRQSFPPVC EDFTMMKRAIFATQRQSFPPVCTHNMLDDS K R A Q R Q 2 2 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 8 1 961.54575 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 430 437 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.0027825 106.94 2 1 0.42708 0.42728 13.648 3 Median 0.36342 0.40542 18.82 2 0 Median 0.46665 0.42728 NaN 1 0 Median 89889000 63249000 26639000 79601000 56308000 23293000 10288000 6941800 3346100 11077 1479 11379 29254;29255;29256 45671;45672;45673 45671 3 RAILASER FNIPPSTLSTILKNKRAILASERKYGVAST STILKNKRAILASERKYGVASTCRKTNKLS K R A E R K 2 2 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 1 914.52976 P07199;Q71VN4 P07199 50 57 CENPB Major centromere autoantigen B yes no 2 0.0081026 81.163 1 1 1.7401 1.461 NaN 1 Median NaN NaN NaN 0 0 Median 1.7401 1.461 NaN 1 0 Median 36396000 28478000 7918500 23818000 23818000 0 12578000 4659600 7918500 11078 1450 11380 29257;29258 45674;45675 45674 2 RAIQTGEELFFDYR VMMVNGDHRIGIFAKRAIQTGEELFFDYRY KRAIQTGEELFFDYRYSQADALKYVGIERE K R A Y R Y 1 2 0 1 0 1 2 1 0 1 1 0 0 2 0 0 1 0 1 0 0 0 14 1 1743.858 A0A090N8E9;Q15910;F2YMM1;S4S3R8;Q75MP9;Q75MQ0 A0A090N8E9 719 732 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 0.0017948 40.857 2 2.4369 2.2022 20.049 2 Median NaN NaN NaN 0 0 Median 2.4369 2.2022 20.049 2 0 Median 4442600 1402000 3040600 0 0 0 4442600 1402000 3040600 11079 456 11381 29259;29260 45676;45677 45677 2 RAITYQIAK ENSTEEQALEDQNAKRAITYQIAKNRGLTP EDQNAKRAITYQIAKNRGLTPRRKKIDRNP K R A A K N 2 1 0 0 0 1 0 0 0 2 0 1 0 0 0 0 1 0 1 0 0 0 9 1 1062.6186 Q9NQZ2 Q9NQZ2 409 417 UTP3 Something about silencing protein 10 yes yes 2 0.040841 48.283 1 1.2393 1.0428 NaN 1 Median NaN NaN NaN 0 0 Median 1.2393 1.0428 NaN 1 0 Median 7296200 3235000 4061200 0 0 0 7296200 3235000 4061200 11080 2063 11382 29261 45678 45678 1 RALEQQVEEMK KDDVGKSVHELEKSKRALEQQVEEMKTQLE EKSKRALEQQVEEMKTQLEELEDELQATED K R A M K T 1 1 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 11 1 1359.6816 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1528 1538 MYH9;FLJ00279 Myosin-9 yes no 2 2.1439E-08 123.96 3 2 2.5001 2.87 28.079 4 Median 2.5001 2.9281 0.45817 2 0 Median 2.5594 2.1588 37.895 2 0 Median 82257000 22013000 60243000 75671000 20151000 55520000 6585700 1862100 4723600 11081 81 11383;11384 29262;29263;29264;29265;29266 45679;45680;45681;45682;45683;45684;45685;45686 45679 51 8 RALEYTIYNQELNETR EKEELAQYQKWDKMRRALEYTIYNQELNET ALEYTIYNQELNETRAKLDELSAKRETSGE R R A T R A 1 2 2 0 0 1 3 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 16 1 2011.9963 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 221 236 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 3 0.042682 14.928 1 1.6981 1.5105 NaN 1 Median NaN NaN NaN 0 0 Median 1.6981 1.5105 NaN 1 0 Median 773710 315850 457860 0 0 0 773710 315850 457860 11082 803 11385 29267 45687 45687 1 RALQTQNSEIVK AAIPHLRRRRGRLPRRALQTQNSEIVKDDE LPRRALQTQNSEIVKDDEGKEDYQFDELNT R R A V K D 1 1 1 0 0 2 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 12 1 1385.7627 Q9Y483;Q96G26;B4DZG1 Q9Y483 506 517 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.021164 44.863 1 1.0227 1.144 NaN 1 Median 1.0227 1.144 NaN 1 0 Median NaN NaN NaN 0 0 Median 6912900 3149600 3763300 6912900 3149600 3763300 0 0 0 11083 2143 11386 29268 45688 45688 1 RANEFLEVGK ______________________________ ENALKRANEFLEVGKKQPALDVLYDVMKSK K R A G K K 1 1 1 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 10 1 1161.6142 Q05BS0;Q6P1R0;Q3B770;Q7Z5T5;Q24JU4;J9R021;Q14152 Q05BS0 14 23 EIF3A;eIF3a Eukaryotic translation initiation factor 3 subunit A yes no 2 0.0014987 72.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11084 1340 11387 29269 45689 45689 1 RANPQVGVAFPHIK DDLDMVAIVRYAYDKRANPQVGVAFPHIKH KRANPQVGVAFPHIKHNYECLVYVQLPFME K R A I K H 2 1 1 0 0 1 0 1 1 1 0 1 0 1 2 0 0 0 0 2 0 0 14 1 1532.8576 P13010;Q53T09 P13010 400 413 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 0.0064985 32.275 1 0.2318 0.19432 NaN 1 Median NaN NaN NaN 0 0 Median 0.2318 0.19432 NaN 1 0 Median 6796000 5615500 1180500 0 0 0 6796000 5615500 1180500 11085 1476 11388 29270 45690;45691 45691 2 RAPDQAAEIGSR LGSRGLCTRLATPPRRAPDQAAEIGSRGST PPRRAPDQAAEIGSRGSTKAQGPQQQPGSE R R A S R G 3 2 0 1 0 1 1 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 12 1 1269.6426 Q0VAB1;A0A024R0M6;Q3ZCQ8;M0R003;M0QXC3;M0R2Z3;M0R303;M0R2D2;M0R1Y4 Q0VAB1 135 146 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 2 0.040105 41.399 1 0.8345 0.83519 NaN 1 Median 0.8345 0.83519 NaN 1 0 Median NaN NaN NaN 0 0 Median 8867400 4769700 4097700 8867400 4769700 4097700 0 0 0 11086 53 11389 29271 45692 45692 0 RAPFDLFENK VEGQLEFRALLFIPRRAPFDLFENKKKKNN LFIPRRAPFDLFENKKKKNNIKLYVRRVFI R R A N K K 1 1 1 1 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 10 1 1235.6299 B4DMA2;A0A024RD80;P08238;B4DGL0;Q58FF7 B4DMA2 300 309 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 3.6645E-08 121.5 2 2 2.1349 2.5241 44.386 3 Plateau 2.1349 2.5241 NaN 1 0 Median 1.3676 1.1719 3.9587 2 0 Median 279780000 63569000 216210000 248300000 50851000 197450000 31476000 12719000 18757000 11087 379 11390 29272;29273;29274;29275 45693;45694;45695;45696;45697;45698 45696 6 RAPFDLFENR VEGQLEFRALLFVPRRAPFDLFENRKKKNN LFVPRRAPFDLFENRKKKNNIKLYVRRVFI R R A N R K 1 2 1 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 10 1 1263.636 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 346 355 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2 0.023579 61.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11088 1348 11391 29276 45699 45699 1 RAPPPAVAAR APAAPPAVAPPAGPRRAPPPAVAAREPPLP PAGPRRAPPPAVAAREPPLPPPPQPPAPPQ R R A A R E 4 2 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 10 1 1004.5879 Q6SPF0 Q6SPF0 198 207 SAMD1 Atherin yes yes 2 0.0011137 83.206 2 1 0.84683 0.91838 18.188 3 Median 0.82591 0.90815 1.5839 2 0 Median 1.3747 1.2437 NaN 1 0 Median 55861000 28860000 27001000 51987000 27294000 24693000 3874400 1565800 2308700 11089 1861 11392 29277;29278;29279 45700;45701;45702;45703 45702 4 RAPSSAQYLEEK DMSPVSQAPREAPARRAPSSAQYLEEKSDQ PARRAPSSAQYLEEKSDQQKKEELLNAMVA R R A E K S 2 1 0 0 0 1 2 0 0 0 1 1 0 0 1 2 0 0 1 0 0 0 12 1 1377.6888 B3KSY4;B4DKU9;A0A0A6YYL4;P57737;I3L442 B3KSY4 656 667 hCG_1787779;CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 2 0.024358 60.434 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11090 495 11393 29280 45704 45704 1 RAQGGDGVLDATGEEANSNAENPK IGFAREGLRAREIEKRAQGGDGVLDATGEE DATGEEANSNAENPKLISAMLCAALYPNVV K R A P K L 4 1 3 2 0 1 3 4 0 0 1 1 0 0 1 1 1 0 0 1 0 0 24 1 2399.0949 Q6P158;Q59G60;H7C109;Q8N4U2 Q6P158 1188 1211 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 2.7671E-16 92.518 3 2 0.98789 0.98663 15.229 4 Median 0.9548 1.0573 13.424 2 0 Median 1.0558 0.90237 16.264 2 0 Median 35341000 16177000 19164000 29568000 13400000 16168000 5773000 2777000 2996000 11091 1850 11394 29281;29282;29283;29284;29285 45705;45706;45707;45708;45709;45710;45711;45712;45713 45708 9 RARQKLRCLSR GCHSSSQRPEVQKPRRARQKLRCLSRGTTY QKPRRARQKLRCLSRGTTYHCKEEECEGD_ R R A S R G 1 4 0 0 1 1 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 11 4 1442.8365 A0A183 A0A183 56 66 LCE6A Late cornified envelope protein 6A yes yes 2 0.0044105 58.676 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2037200 0 2037200 2037200 0 2037200 0 0 0 11092 629 11395 29286;29287 45714;45715 45714 2 RASAILR RKNKYRPDLRMAAIRRASAILRSQKPVMVK DLRMAAIRRASAILRSQKPVMVKRKRTRPT R R A L R S 2 2 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 7 1 785.48717 P46779;O60251 P46779 113 119 RPL28 60S ribosomal protein L28 yes no 2 0.017138 123.45 2 2 0.89827 0.86638 18.503 4 Median 0.90932 1.0299 13.736 2 0 Median 0.89827 0.77455 5.1239 2 0 Median 478730000 252970000 225760000 423750000 224700000 199040000 54984000 28271000 26713000 11093 1572 11396 29288;29289;29290;29291 45716;45717;45718;45719 45716 4 RATAAECLR FTDFLLPMLELIPEKRATAAECLRHPWLNS ELIPEKRATAAECLRHPWLNS_________ K R A L R H 3 2 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 9 1 1046.5291 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9 Q96SB4 641 649 SRPK1 SRSF protein kinase 1 yes no 2 0.029928 52.579 1 0.84476 0.91675 NaN 1 Median 0.84476 0.91675 NaN 1 0 Median NaN NaN NaN 0 0 Median 14755000 7418800 7336200 14755000 7418800 7336200 0 0 0 11094 1988 11397 29292 45720 45720 1 RATVLESEGTR VKESMQMQVEAERRKRATVLESEGTRESAI ERRKRATVLESEGTRESAINVAEGKKQAQI K R A T R E 1 2 0 0 0 0 2 1 0 0 1 0 0 0 0 1 2 0 0 1 0 0 11 1 1217.6364 Q9UJZ1;A0A087WYB4;F2Z2I8;Q6ZNW0 Q9UJZ1 201 211 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 0.0238 46.955 1 1.081 1.1652 NaN 1 Median 1.081 1.1652 NaN 1 0 Median NaN NaN NaN 0 0 Median 16333000 6926200 9406900 16333000 6926200 9406900 0 0 0 11095 2104 11398 29293 45721 45721 1 RAVFSADSK NIRVVRCGGSELNFRRAVFSADSKYIFCVS SELNFRRAVFSADSKYIFCVSGDFVKVYST R R A S K Y 2 1 0 1 0 0 0 0 0 0 0 1 0 1 0 2 0 0 0 1 0 0 9 1 979.50869 A8K330;Q8IWA0;F8WE20;F8WC81 A8K330 21 29 WDR75 WD repeat-containing protein 75 yes no 2 0.022771 56.434 1 1.1099 0.91252 NaN 1 Median NaN NaN NaN 0 0 Median 1.1099 0.91252 NaN 1 0 Median 4422800 2147100 2275700 0 0 0 4422800 2147100 2275700 11096 716 11399 29294 45722 45722 1 RAVLETIR LYGQPVAAGDTPAPRRAVLETIRTYLTITD GDTPAPRRAVLETIRTYLTITDTQLVNSLL R R A I R T 1 2 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 8 1 956.57671 B3KMR5;Q5JTH9;B3KY97 B3KMR5 711 718 RRP12 RRP12-like protein yes no 2 0.014626 77.355 1 1.1069 1.2474 NaN 1 Median 1.1069 1.2474 NaN 1 0 Median NaN NaN NaN 0 0 Median 29264000 13587000 15677000 29264000 13587000 15677000 0 0 0 11097 907 11400 29295 45723;45724 45724 2 RAYDIAGSTK KMQSLDKDIVALMVRRAYDIAGSTKDVKVF ALMVRRAYDIAGSTKDVKVFLNGNKLPVKG R R A T K D 2 1 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 10 1 1080.5564 P11388 P11388 242 251 TOP2A DNA topoisomerase 2-alpha yes yes 2 7.9841E-06 117.83 1 1.3673 1.1703 NaN 1 Median NaN NaN NaN 0 0 Median 1.3673 1.1703 NaN 1 0 Median 122620000 52222000 70401000 0 0 0 122620000 52222000 70401000 11098 1471 11401 29296 45725;45726 45726 2 RAYVEIEYEQETEPVAK KHKGKMPLRGPLQRKRAYVEIEYEQETEPV YVEIEYEQETEPVAKAKTT___________ K R A A K A 2 1 0 0 0 1 5 0 0 1 0 1 0 0 1 0 1 0 2 2 0 0 17 1 2053.0004 Q9BXY0 Q9BXY0 280 296 MAK16 Protein MAK16 homolog yes yes 3 0.00022707 44.587 1 1.2777 1.0804 NaN 1 Median NaN NaN NaN 0 0 Median 1.2777 1.0804 NaN 1 0 Median 10167000 4004500 6162100 0 0 0 10167000 4004500 6162100 11099 2016 11402 29297 45727;45728 45727 2 RCATPVIIDEILPSK DLEQKEKHHVKMKAKRCATPVIIDEILPSK RCATPVIIDEILPSKKMKVSNNKKKPEEEG K R C S K K 1 1 0 1 1 0 1 0 0 3 1 1 0 0 2 1 1 0 0 1 0 0 15 1 1710.9338 Q643R0;Q9ULW0;B3KM90 Q643R0 144 158 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 5.5958E-05 56.959 1 2 1.0959 0.92686 12.235 3 Median 0.69024 0.76796 NaN 1 0 Median 1.1229 0.94631 2.9376 2 0 Median 28243000 14502000 13741000 10715000 5960000 4754700 17528000 8542200 8985900 11100 1837 11403 29298;29299;29300 45729;45730;45731;45732;45733;45734;45735 45733 7 RCATPVIIDEILPSKK DLEQKEKHHVKMKAKRCATPVIIDEILPSK CATPVIIDEILPSKKMKVSNNKKKPEEEGS K R C K K M 1 1 0 1 1 0 1 0 0 3 1 2 0 0 2 1 1 0 0 1 0 0 16 2 1839.0288 Q643R0;Q9ULW0;B3KM90 Q643R0 144 159 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 0.025678 25.508 2 1.1236 1.1284 9.6857 2 Median NaN NaN NaN 0 0 Median 1.1236 1.1284 9.6857 2 0 Median 7321200 2847000 4474300 0 0 0 7321200 2847000 4474300 11101 1837 11404 29301;29302 45736;45737;45738 45737 3 RCGVQSFYTPR TYTFNTHKAQHTFCKRCGVQSFYTPRSNPG TFCKRCGVQSFYTPRSNPGGFGIAPHCLDE K R C P R S 0 2 0 0 1 1 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 0 11 1 1369.6561 Q7Z7K6 Q7Z7K6 218 228 CENPV Centromere protein V yes yes 3 0.00031645 55.04 1 2 1.6488 1.4184 4.4164 3 Median 1.2901 1.3909 NaN 1 0 Median 1.6777 1.4651 4.5817 2 0 Median 47445000 18661000 28784000 16555000 6799200 9756200 30889000 11862000 19028000 11102 1882 11405 29303;29304;29305 45739;45740;45741;45742 45739 4 RCLLIDYNPDSQELDFR FPSINVHKVNLNTIKRCLLIDYNPDSQELD LLIDYNPDSQELDFRHYSIKVVPVGASRGM K R C F R H 0 2 1 3 1 1 1 0 0 1 3 0 0 1 1 1 0 0 1 0 0 0 17 1 2153.0212 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3 A0A0A6YYI3 179 195 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 3 0.0024611 31.883 2 1.5547 1.3648 7.0781 2 Median NaN NaN NaN 0 0 Median 1.5547 1.3648 7.0781 2 0 Median 21244000 8320700 12924000 0 0 0 21244000 8320700 12924000 11103 493 11406 29306;29307 45743;45744;45745;45746 45745 4 RDDDEPGPWTK EKGKSGFLVWRYLLRRDDDEPGPWTKEGKD YLLRRDDDEPGPWTKEGKDRIKKLGLTMQY R R D T K E 0 1 0 3 0 0 1 1 0 0 0 1 0 0 2 0 1 1 0 0 0 0 11 1 1314.584 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 595 605 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.0030265 69.451 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3215400 3215400 0 3215400 3215400 0 0 0 0 11104 406 11407 29308 45747;45748 45747 2 RDELTLEGIK MTNKFMTDPIRILVKRDELTLEGIKQFFVA RILVKRDELTLEGIKQFFVAVEREEWKFDT K R D I K Q 0 1 0 1 0 0 2 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1172.6401 A0A024R8W0;P38919 A0A024R8W0 243 252 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.019845 51.436 1 2.2883 2.7193 NaN 1 Median 2.2883 2.7193 NaN 1 0 Median NaN NaN NaN 0 0 Median 45000000 12461000 32540000 45000000 12461000 32540000 0 0 0 11105 261 11408 29309 45749 45749 1 RDFNHINVELSLLGK KGRTVIVKGPRGTLRRDFNHINVELSLLGK RDFNHINVELSLLGKKKKRLRVDKWWGNRK R R D G K K 0 1 2 1 0 0 1 1 1 1 3 1 0 1 0 1 0 0 0 1 0 0 15 1 1753.9475 Q53Z07;P32969;E7ESE0;D6RAN4;H0Y9V9;B4E1M5;B4DLV8 Q53Z07 36 50 RPL9 60S ribosomal protein L9 yes no 3 0.0001247 56.215 1 1.4119 1.1889 NaN 1 Median NaN NaN NaN 0 0 Median 1.4119 1.1889 NaN 1 0 Median 4181900 1949800 2232000 0 0 0 4181900 1949800 2232000 11106 1537 11409 29310 45750 45750 1 RDFNQFIK EKEKLLTQGFTNWNKRDFNQFIKANEKWGR GFTNWNKRDFNQFIKANEKWGRDDIENIAR K R D I K A 0 1 1 1 0 1 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 8 1 1066.556 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 848 855 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.034879 58.23 1 2.4649 2.9682 NaN 1 Median 2.4649 2.9682 NaN 1 0 Median NaN NaN NaN 0 0 Median 102970000 27113000 75857000 102970000 27113000 75857000 0 0 0 11107 1391 11410 29311 45751 45751 1 RDFSEIK GAEIQCEAETGGTHKRDFSEIKSQQCQGNE AETGGTHKRDFSEIKSQQCQGNELTRPSAS K R D I K S 0 1 0 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 7 1 893.46068 A0A024R0F1;Q9UNY4 A0A024R0F1 214 220 TTF2 Transcription termination factor 2 yes no 2 0.032734 82.305 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16984000 16984000 0 16984000 16984000 0 0 0 0 11108 44 11411 29312 45752 45752 1 RDGSNIIYTAK DIVFIIKDKDHPKFKRDGSNIIYTAKISLR PKFKRDGSNIIYTAKISLREALCGCSINVP K R D A K I 1 1 1 1 0 0 0 1 0 2 0 1 0 0 0 1 1 0 1 0 0 0 11 1 1236.6463 B4DNN2;Q59E89;Q9UDY4 B4DNN2 130 140 DNAJB4 DnaJ homolog subfamily B member 4 yes no 2 0.013691 51.276 1 2.4507 2.7224 NaN 1 Median 2.4507 2.7224 NaN 1 0 Median NaN NaN NaN 0 0 Median 19545000 6113100 13432000 19545000 6113100 13432000 0 0 0 11109 1013 11412 29313 45753 45753 1 RDIQENDEEAVQVK TDREASIDILHSIVKRDIQENDEEAVQVKE KRDIQENDEEAVQVKEQSILELGSLLAKTG K R D V K E 1 1 1 2 0 2 3 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 14 1 1671.8064 O00231;J3QRY4;B4DTS5 O00231 33 46 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.0055154 70.488 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11110 1360 11413 29314;29315;29316 45754;45755;45756 45755 3 RDISSSLNSLADSNAR ANGNVEAKVVCLFRRRDISSSLNSLADSNA DISSSLNSLADSNAREFEEESKQPGVSEQQ R R D A R E 2 2 2 2 0 0 0 0 0 1 2 0 0 0 0 5 0 0 0 0 0 0 16 1 1704.8391 A0A024R534;O94776 A0A024R534 49 64 MTA2 Metastasis-associated protein MTA2 yes no 3 0.00072176 33.872 2 1.7215 1.5526 8.6532 2 Median NaN NaN NaN 0 0 Median 1.7215 1.5526 8.6532 2 0 Median 4815300 2206300 2609000 0 0 0 4815300 2206300 2609000 11111 168 11414 29317;29318 45757;45758;45759;45760;45761 45757 5 RDIVEELSALK TPTSTRRRPKTPLGKRDIVEELSALKQLTQ PLGKRDIVEELSALKQLTQTTHTDKVPGDE K R D L K Q 1 1 0 1 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 11 1 1271.7085 P46013 P46013 2128 2138 MKI67 Antigen KI-67 yes yes 2 0.00031741 93.258 2 2 2.3496 2.3798 19.109 4 Median 1.6825 2.0137 4.4732 2 0 Median 3.2361 2.7905 3.3663 2 0 Median 486930000 167620000 319320000 435610000 155170000 280430000 51325000 12441000 38883000 11112 1569 11415 29319;29320;29321;29322 45762;45763;45764;45765;45766;45767;45768;45769;45770 45764 9 RDLALVNDQLLGFVR AIRHDVIVTIITAAKRDLALVNDQLLGFVR RDLALVNDQLLGFVRERTLDKRWRVRKEAM K R D V R E 1 2 1 2 0 1 0 1 0 0 4 0 0 1 0 0 0 0 0 2 0 0 15 1 1727.9683 G1UI16;Q29RF7 G1UI16 390 404 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 3 0.045488 25.365 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1535300 1535300 0 1535300 1535300 0 0 0 0 11113 1270 11416 29323 45771 45771 1 RDLGEELEALK LESERASRNKAEKQKRDLGEELEALKTELE EKQKRDLGEELEALKTELEDTLDSTAAQQE K R D L K T 1 1 0 1 0 0 3 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 1 1271.6721 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;Q7Z7R0 A0A024R1N1 1135 1145 MYH9;MYH11 Myosin-9;Myosin-11 yes no 2 0.00073321 78.513 2 1.656 1.9534 1.037 2 Median 1.656 1.9534 1.037 2 0 Median NaN NaN NaN 0 0 Median 100210000 38712000 61497000 100210000 38712000 61497000 0 0 0 11114 81 11417 29324;29325 45772;45773;45774;45775 45774 4 RDLIDNSFNR GLALGAVIASSKKAKRDLIDNSFNRYTFNE SKKAKRDLIDNSFNRYTFNEDEGELPEWFV K R D N R Y 0 2 2 2 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 10 1 1248.6211 Q8IY81;B4DKU3 Q8IY81 682 691 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.0045832 67.726 1 0.99176 1.1083 NaN 1 Median 0.99176 1.1083 NaN 1 0 Median NaN NaN NaN 0 0 Median 26106000 12552000 13554000 26106000 12552000 13554000 0 0 0 11115 1898 11418 29326 45776 45776 1 RDLPNALDEK KPQLQGIPVLVLGNKRDLPNALDEKQLIEK VLGNKRDLPNALDEKQLIEKMNLSAIQDRE K R D E K Q 1 1 1 2 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 10 1 1169.6041 B4DQT8;A0A024R2D4;B4E1J8;Q9NVJ2 B4DQT8 123 132 ARL8B ADP-ribosylation factor-like protein 8B yes no 2 0.00019975 84.658 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11116 109 11419 29327 45777 45777 1 RDNYVPEVSALDQEIIEVDPDTK VRGISIKLQEEERERRDNYVPEVSALDQEI SALDQEIIEVDPDTKEMLKLLVSVCWIPKV R R D T K E 1 1 1 4 0 1 3 0 0 2 1 1 0 0 2 1 1 0 1 3 0 0 23 1 2644.2868 H0YN88;A0A075B716;P08708 H0YN88 81 103 RPS17 40S ribosomal protein S17 yes no 3 2.841E-08 55.061 2 0.73351 0.61694 2.9839 2 Median NaN NaN NaN 0 0 Median 0.73351 0.61694 2.9839 2 0 Median 14646000 8193500 6452100 0 0 0 14646000 8193500 6452100 11117 396 11420 29328;29329 45778;45779 45778 2 RDPALNSGVSQKPDPAK STTGAKKRAAPKGTKRDPALNSGVSQKPDP PALNSGVSQKPDPAKTKNRRKRKPSTSDDS K R D A K T 2 1 1 2 0 1 0 1 0 0 1 2 0 0 3 2 0 0 0 1 0 0 17 2 1778.9275 P11388 P11388 1443 1459 TOP2A DNA topoisomerase 2-alpha yes yes 2;3;4 1.112E-106 207.43 8 2 0.6852 0.84069 27.803 8 Median 0.67425 0.81785 24.404 6 0 Median 1.251 1.2564 4.0822 2 0 Median 3149100000 1726200000 1422900000 2235300000 1332600000 902670000 913860000 393610000 520250000 11118 1471 11421 29330;29331;29332;29333;29334;29335;29336;29337;29338;29339 45780;45781;45782;45783;45784;45785;45786;45787;45788;45789;45790;45791;45792 45788 13 RDPVALEDVYPIHMILENK RYEEIDLETGILESRRDPVALEDVYPIHMI ALEDVYPIHMILENKDGIQGSCRYFKERKN R R D N K D 1 1 1 2 0 0 2 0 1 2 2 1 1 0 2 0 0 0 1 2 0 0 19 1 2251.1671 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 89 107 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 0.055154 8.4704 1 1.8444 1.5378 NaN 1 Median NaN NaN NaN 0 0 Median 1.8444 1.5378 NaN 1 0 Median 3536900 1511900 2025100 0 0 0 3536900 1511900 2025100 11119 1699 11422 29340 45793 45793 1 RDQAVMISGESGAGK FAVADTVYRALRTERRDQAVMISGESGAGK RDQAVMISGESGAGKTEATKRLLQFYAETC R R D G K T 2 1 0 1 0 1 1 3 0 1 0 1 1 0 0 2 0 0 0 1 0 0 15 1 1504.7304 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6;I3L168;I3L3F5 F5H6E2 108 122 MYO1C Unconventional myosin-Ic yes no 2 0.00016364 75.695 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5553900 0 5553900 5553900 0 5553900 0 0 0 11120 1088 11423 29341;29342 45794;45795 45794 832 2 RDQNYPGAIAIHHPNVAEK AANPAFNLFWAGWDRRDQNYPGAIAIHHPN YPGAIAIHHPNVAEKRISNSTSPTSFVAWG R R D E K R 3 1 2 1 0 1 1 1 2 2 0 1 0 0 2 0 0 0 1 1 0 0 19 1 2129.0766 CON__P15636 CON__P15636 342 360 yes yes 3;4 6.0579E-24 120.71 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 252670000 252670000 0 250520000 250520000 0 2150500 2150500 0 + 11121 1163 11424 29343;29344;29345;29346 45796;45797;45798;45799;45800 45796 5 RDTLALLQK KLKRAKKKQLRSIEKRDTLALLQKQPPQQP LRSIEKRDTLALLQKQPPQQPAAKI_____ K R D Q K Q 1 1 0 1 0 1 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 1 1056.6291 Q9H6F5 Q9H6F5 342 350 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.003083 80.165 1 2 0.46704 0.39777 40.962 3 Median 0.66549 0.79247 NaN 1 0 Median 0.44881 0.39013 2.7436 2 0 Median 620580000 370810000 249770000 523960000 304960000 219000000 96620000 65852000 30768000 11122 2037 11425 29347;29348;29349 45801;45802;45803;45804;45805 45802 5 REAPEELLAYEGVR RHCHEAQAVLGVLLRREAPEELLAYEGVRA RREAPEELLAYEGVRAALEALLPYTERHFQ R R E V R A 2 2 0 0 0 0 4 1 0 0 2 0 0 0 1 0 0 0 1 1 0 0 14 1 1630.8315 Q12788;J3KNP2;A0JLS5 Q12788 741 754 TBL3 Transducin beta-like protein 3 yes no 3 0.026427 21.093 2 1.3086 1.1843 8.66 2 Median NaN NaN NaN 0 0 Median 1.3086 1.1843 8.66 2 0 Median 2752000 1214700 1537300 0 0 0 2752000 1214700 1537300 11123 1698 11426 29350;29351 45806;45807 45807 2 REATADDLIK EVVANLQYDDGSGMKREATADDLIKVVEEL GSGMKREATADDLIKVVEELTRIH______ K R E I K V 2 1 0 2 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 1 1130.5932 Q16531;B4DSA8;B4DZP5 Q16531 1122 1131 DDB1 DNA damage-binding protein 1 yes no 2 1.5635E-07 105.98 2 0.58202 0.69933 NaN 1 Median 0.58202 0.69933 NaN 1 0 Median NaN NaN NaN 0 0 Median 173340000 146110000 27231000 173340000 146110000 27231000 0 0 0 11124 1770 11427 29352;29353 45808;45809 45809 2 REDLVVAPAGITLK KEEEHDCFLEEIMTKREDLVVAPAGITLKE KREDLVVAPAGITLKEANEILQRSKKGKLP K R E L K E 2 1 0 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 14 1 1480.8613 H0Y4R1;P12268;B7Z1G4;Q6QE17;E7ETK5 H0Y4R1 114 127 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 1.0792E-09 122.97 4 2 1.2573 1.5474 15.36 5 Linear 1.2737 1.5188 3.1536 3 0 Plateau 1.3448 1.1505 8.8126 2 0 Median 369660000 154300000 215360000 340630000 141730000 198900000 29028000 12572000 16455000 11125 1282 11428 29354;29355;29356;29357;29358;29359 45810;45811;45812;45813;45814;45815;45816;45817 45814 8 REDSAPPSSVAR AVQARRSRSITRKRKREDSAPPSSVARSGS KRKREDSAPPSSVARSGSCSRTPRDVSGLR K R E A R S 2 2 0 1 0 0 1 0 0 0 0 0 0 0 2 3 0 0 0 1 0 0 12 1 1270.6266 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 553 564 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.00033867 79.201 2 1.0981 1.1565 10.998 2 Median 1.0981 1.1565 10.998 2 0 Median NaN NaN NaN 0 0 Median 38814000 18278000 20536000 38814000 18278000 20536000 0 0 0 11126 1183 11429 29360;29361 45818;45819;45820 45820 3 REEEEFNTGPLSVLTQSVK LNKPKSEMTPEELQKREEEEFNTGPLSVLT EFNTGPLSVLTQSVKNNTQVLINCRNNKKL K R E V K N 0 1 1 0 0 1 4 1 0 0 2 1 0 1 1 2 2 0 0 2 0 0 19 1 2162.0855 P62316;K7ERG4 P62316 19 37 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 3 1.5156E-08 88.176 2 2 0.97126 1.1471 40.963 4 Linear 0.96759 1.1407 0.95709 2 0 Median 0.6656 0.56149 2.9983 2 0 Median 111270000 58550000 52720000 95228000 48881000 46347000 16042000 9668800 6373000 11127 1645 11430 29362;29363;29364;29365 45821;45822;45823;45824;45825;45826;45827 45823 7 REEEEQQEGGFASPR LEALANREREKENSKREEEEQQEGGFASPR REEEEQQEGGFASPRTGKGKWKRKSAGGGP K R E P R T 1 2 0 0 0 2 5 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 15 1 1747.7762 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 640 654 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2;3 1.5281E-07 92.8 3 2 0.61385 0.61682 14.837 5 Median 0.69603 0.7678 19.124 3 0 Plateau 0.65095 0.58368 7.8114 2 0 Median 64434000 41640000 22793000 58897000 38109000 20789000 5536500 3531700 2004800 11128 406 11431 29366;29367;29368;29369;29370 45828;45829;45830;45831;45832;45833;45834 45829 7 REEETLDTIK FAQKVVPDPNVIKLKREEETLDTIKQYYVL VIKLKREEETLDTIKQYYVLCSSRDEKFQA K R E I K Q 0 1 0 1 0 0 3 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 10 1 1232.6248 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;Q59FQ9;Q68DY7;B4DL69;Q69YM2;A0A024QZ90;I3L352;B4DS24;Q9HBZ9;Q7Z4W5 I3L0H8 267 276 DDX19A;DDX19B;DKFZp686C21137;hCG_1998531;DKFZp762C1313 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 2.096E-05 103.34 1 2.6521 3.1811 NaN 1 Median 2.6521 3.1811 NaN 1 0 Median NaN NaN NaN 0 0 Median 59927000 16062000 43866000 59927000 16062000 43866000 0 0 0 11129 593 11432 29371 45835 45835 1 REEFVSIK FRQHVTTLRETKASRREEFVSIKRQIILCM RETKASRREEFVSIKRQIILCMEELDHTPD R R E I K R 0 1 0 0 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 1 1006.5447 A0A024RC67;O43663;H0YM42;B4E238 A0A024RC67 171 178 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.050655 50.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13288000 0 13288000 13288000 0 13288000 0 0 0 11130 353 11433 29372 45836 45836 1 REELSNVLAAMR FIKKRVGTHIRAKRKREELSNVLAAMRKAA KRKREELSNVLAAMRKAAAKKD________ K R E M R K 2 2 1 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 12 1 1387.7242 Q9Y3U8 Q9Y3U8 87 98 RPL36 60S ribosomal protein L36 yes yes 3 0.0088656 40.287 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16692000 0 16692000 16692000 0 16692000 0 0 0 11131 2140 11434 29373 45837 45837 1980 1 REEPMEEEEEPEQK ESEEEEEEKQEKEEKREEPMEEEEEPEQKP KREEPMEEEEEPEQKPCLKPTLRPISSAPS K R E Q K P 0 1 0 0 0 1 8 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 14 1 1787.752 P49756 P49756 597 610 RBM25 RNA-binding protein 25 yes yes 3 0.00083755 48.823 1 1.3859 1.5938 NaN 1 Median 1.3859 1.5938 NaN 1 0 Median NaN NaN NaN 0 0 Median 1982200 776550 1205600 1982200 776550 1205600 0 0 0 11132 1587 11435 29374 45838 45838 1368 1 REFEPASAR EPEAASSRGSPVRVKREFEPASAREAPASV SPVRVKREFEPASAREAPASVVPFVRVKRE K R E A R E 2 2 0 0 0 0 2 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 9 1 1061.5254 B9A018;Q53GS9;F8WC91 B9A018 52 60 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.0023667 85.733 2 0.72074 0.79785 15.497 2 Median 0.72074 0.79785 15.497 2 0 Median NaN NaN NaN 0 0 Median 53299000 30204000 23095000 53299000 30204000 23095000 0 0 0 11133 1119 11436 29375;29376 45839;45840 45840 2 REFQDAPYNEVTGAPAQFEGTEQAPFLGSR APSQFEERKDPHGEKREFQDAPYNEVTGAP AQFEGTEQAPFLGSRGGAPFQFGGQRRPLL K R E S R G 4 2 1 1 0 3 4 3 0 0 1 0 0 3 3 1 2 0 1 1 0 0 30 1 3311.5483 Q9BTC0 Q9BTC0 1853 1882 DIDO1 Death-inducer obliterator 1 yes yes 3 0.00017858 30.922 2 2.3469 2.066 3.9655 2 Median NaN NaN NaN 0 0 Median 2.3469 2.066 3.9655 2 0 Median 21857000 5124400 16732000 0 0 0 21857000 5124400 16732000 11134 2002 11437 29377;29378 45841;45842;45843;45844;45845;45846;45847 45842 7 REGAGDAEADPLEPPPPQQQLGLSLR EFRKTWGFRRTTIAKREGAGDAEADPLEPP LEPPPPQQQLGLSLRRSGRQPKRTERVEQF K R E L R R 3 2 0 2 0 3 3 3 0 0 4 0 0 0 5 1 0 0 0 0 0 0 26 1 2740.378 Q9BTC0 Q9BTC0 37 62 DIDO1 Death-inducer obliterator 1 yes yes 3 2.3319E-06 40.756 1 2 1.269 1.0647 28.563 3 Median 0.60791 0.68832 NaN 1 0 Median 1.2859 1.1201 7.1654 2 0 Median 92707000 46027000 46680000 31363000 19476000 11888000 61344000 26551000 34793000 11135 2002 11438 29379;29380;29381 45848;45849;45850;45851;45852;45853;45854;45855 45848 8 REGLGLDVER GEGIREPISVKEQHKREGLGLDVERVNKIA KEQHKREGLGLDVERVNKIAKRDIEQIIRN K R E E R V 0 2 0 1 0 0 2 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 1 1142.6044 Q6NUN2;A3F769;O15226;A3F768;A2I829 Q6NUN2 588 597 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.019152 51.998 1 0.72793 0.79245 NaN 1 Median 0.72793 0.79245 NaN 1 0 Median NaN NaN NaN 0 0 Median 18242000 8897700 9343800 18242000 8897700 9343800 0 0 0 11136 655 11439 29382 45856;45857 45856 2 RELDSITPEVLPGWK SQYHELVVQARDDFKRELDSITPEVLPGWK RELDSITPEVLPGWKGMSVSDLADKLSTDD K R E W K G 0 1 0 1 0 0 2 1 0 1 2 1 0 0 2 1 1 1 0 1 0 0 15 1 1738.9254 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 371 385 IMMT MICOS complex subunit MIC60 no no 3 0.0012413 37.77 2 0.73469 0.82635 5.48 2 Median 0.73469 0.82635 5.48 2 0 Median NaN NaN NaN 0 0 Median 20960000 8389800 12570000 20960000 8389800 12570000 0 0 0 11137 1774;1029;1128 11440 29383;29384 45858;45859;45860;45861 45860 4 RELEIESQTEEQPTTK ALHTDDPLTWDYVARRELEIESQTEEQPTT ELEIESQTEEQPTTKQAKAVEVGRKEERCC R R E T K Q 0 1 0 0 0 2 5 0 0 1 1 1 0 0 1 1 3 0 0 0 0 0 16 1 1916.9327 B3KQ21;Q9NYH9;B3KX32;B4DSL9 B3KQ21 280 295 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2;3 3.8651E-05 69.805 3 2 1.1067 1.0876 16.56 4 Median 0.85049 0.97085 1.7148 2 0 Median 1.5176 1.2767 8.3406 2 0 Median 65296000 32487000 32809000 51285000 27024000 24260000 14011000 5462300 8549200 11138 925 11441 29385;29386;29387;29388;29389 45862;45863;45864;45865;45866;45867;45868;45869;45870;45871 45865 10 RENPLLPEEEEQR DEFENRTRNVDVYDKRENPLLPEEEEQRAI DKRENPLLPEEEEQRAIAKIKMLGNIKFIG K R E Q R A 0 2 1 0 0 1 5 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 13 1 1637.8009 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77 D3DQV9 188 200 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 3 0.023815 22.911 1 1.6128 1.7691 NaN 1 Median 1.6128 1.7691 NaN 1 0 Median NaN NaN NaN 0 0 Median 20223000 8252300 11971000 20223000 8252300 11971000 0 0 0 11139 1054 11442 29390 45872 45872 1 REPFLLSGGDDGALK ATAHDGDVNVISWSRREPFLLSGGDDGALK REPFLLSGGDDGALKIWDLRQFKSGSPVAT R R E L K I 1 1 0 2 0 0 1 3 0 0 3 1 0 1 1 1 0 0 0 0 0 0 15 1 1573.81 Q8NCK5;Q9BQ67;Q8TCJ8;B2RDP6;B4DTI1 Q8NCK5 319 333 GRWD1;DKFZp564C172 Glutamate-rich WD repeat-containing protein 1 yes no 2;3 0.00017888 66.262 4 2 0.76068 0.83924 24.604 6 Median 0.8178 0.93279 11.783 4 0 Median 0.69669 0.58117 7.5902 2 0 Median 112730000 62759000 49973000 103020000 57603000 45413000 9715000 5155700 4559300 11140 1922 11443 29391;29392;29393;29394;29395;29396 45873;45874;45875;45876;45877;45878;45879 45876 6 REPLPSR APVSRGRDSYGGPPRREPLPSRRDVYLSPR DSYGGPPRREPLPSRRDVYLSPRDDGYSTK R R E S R R 0 2 0 0 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 7 1 853.477 H0Y6E7;H3BT71;P38159;B4E352;Q2VIN3;Q96E39;B3KRG5;H3BUY5;F1T0J8;Q8IZ40 H0Y6E7 198 204 RBMX;RBMXL1;RCOR2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;REST corepressor 2 yes no 2 0.017989 110.31 1 1.2165 1.3277 NaN 1 Median 1.2165 1.3277 NaN 1 0 Median NaN NaN NaN 0 0 Median 167910000 74976000 92933000 167910000 74976000 92933000 0 0 0 11141 1284 11444 29397 45880 45880 1 REPLSLINVR GARPGPGVWDPNWDRREPLSLINVRKRNVE PNWDRREPLSLINVRKRNVESGEEELASKL R R E V R K 0 2 1 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 1 0 0 10 1 1195.7037 Q96HS1 Q96HS1 65 74 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 3 0.013221 46.796 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5505500 0 5505500 4601600 0 4601600 903950 0 903950 11142 1972 11445 29398;29399 45881;45882 45881 2 REPTVSSFYVK WNNAFTLLSAVSLPRREPTVSSFYVKRAEL SLPRREPTVSSFYVKRAELWDTWKVAHLKE R R E V K R 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 2 1 0 1 2 0 0 11 1 1311.6823 Q9BVI4;F5H303 Q9BVI4 222 232 NOC4L Nucleolar complex protein 4 homolog yes no 2 8.2963E-08 117.52 2 0.84416 0.99772 4.3501 2 Median 0.84416 0.99772 4.3501 2 0 Median NaN NaN NaN 0 0 Median 137480000 78499000 58983000 137480000 78499000 58983000 0 0 0 11143 2007 11446 29400;29401 45883;45884 45883 2 REPVPFPSGSAGPGPR GGCGGGGSGGGGAPRREPVPFPSGSAGPGP EPVPFPSGSAGPGPRGPRATESGKRMDCPA R R E P R G 1 2 0 0 0 0 1 3 0 0 0 0 0 1 5 2 0 0 0 1 0 0 16 1 1606.8216 Q9UBB5;X6RBL6;A0A024R2B8 Q9UBB5 124 139 MBD2 Methyl-CpG-binding domain protein 2 yes no 3 0.00021286 34.395 2 2 1.1105 1.102 21.192 4 Median 0.817 0.91321 1.5594 2 0 Median 1.4973 1.3178 0.26916 2 0 Median 114160000 59834000 54323000 102820000 55262000 47554000 11342000 4572500 6769400 11144 2096 11447 29402;29403;29404;29405 45885;45886;45887;45888;45889;45890;45891;45892;45893 45886 9 REQEPTERPLK DGLTLKELQNRLRRKREQEPTERPLKGIQS LRRKREQEPTERPLKGIQSRLRKKRREEGP K R E L K G 0 2 0 0 0 1 3 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 11 2 1381.7314 Q9BTC0 Q9BTC0 172 182 DIDO1 Death-inducer obliterator 1 yes yes 3 0.00031709 87.184 2 0.58895 0.65036 3.3904 2 Median 0.58895 0.65036 3.3904 2 0 Median NaN NaN NaN 0 0 Median 24291000 14758000 9533200 24291000 14758000 9533200 0 0 0 11145 2002 11448 29406;29407 45894;45895;45896 45896 3 REQEVNILK DTLDSTAAQQELRSKREQEVNILKKTLEEE QELRSKREQEVNILKKTLEEEAKTHEAQIQ K R E L K K 0 1 1 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1127.6299 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1165 1173 MYH9 Myosin-9 yes no 2 0.00025756 108.15 4 1 1.7984 2.1407 6.3552 5 Median 1.7883 2.1326 6.3516 4 0 Median 2.7398 2.2963 NaN 1 0 Median 314430000 112800000 201620000 309050000 111370000 197680000 5379700 1432500 3947200 11146 81 11449 29408;29409;29410;29411;29412 45897;45898;45899;45900;45901;45902;45903;45904 45899 8 REQITLPEQAK NGPKAQLMLRYPDGKREQITLPEQAKLLAL PDGKREQITLPEQAKLLALVKHVQSKGYPN K R E A K L 1 1 0 0 0 2 2 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 11 1 1311.7147 O94888;C9JAT7 O94888 424 434 UBXN7 UBX domain-containing protein 7 yes no 2 0.012286 52.79 1 0.68893 0.77306 NaN 1 Median 0.68893 0.77306 NaN 1 0 Median NaN NaN NaN 0 0 Median 12744000 5904000 6840200 12744000 5904000 6840200 0 0 0 11147 1417 11450 29413 45905 45905 1 RESVELALK NQGNLKGDGLCCYLKRESVELALKLLDEDE LCCYLKRESVELALKLLDEDEIRGYKLHVE K R E L K L 1 1 0 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 1 1043.5975 O43719;B4DRS4;Q5H919;Q5H918 O43719 191 199 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.0086894 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25871000 0 25871000 25871000 0 25871000 0 0 0 11148 1388 11451 29414 45906 45906 1 RESVLTATSILNNPIVK PDHIKGKQAYKEQIKRESVLTATSILNNPI SVLTATSILNNPIVKARYERFVKGENPFEI K R E V K A 1 1 2 0 0 0 1 0 0 2 2 1 0 0 1 2 2 0 0 2 0 0 17 1 1854.0575 Q5BKZ1;A0A0A0MRN4 Q5BKZ1 443 459 ZNF326 DBIRD complex subunit ZNF326 yes no 3 9.9093E-06 79.805 2 2 1.5311 1.786 45.049 4 Linear 1.3802 1.5271 16.194 2 0 Median 0.85068 0.71422 7.1202 2 0 Median 48760000 22588000 26172000 33936000 15067000 18870000 14824000 7521200 7302600 11149 1804 11452 29415;29416;29417;29418 45907;45908;45909;45910;45911;45912;45913 45909 7 RETFVQAVSK ______________________________ ______________________________ K R E S K E 1 1 0 0 0 1 1 0 0 0 0 1 0 1 0 1 1 0 0 2 0 0 10 1 1163.6299 Q86XI2;B3KRQ2;F8WE06 Q86XI2 4 13 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.007105 61.78 2 0.89756 1.0367 2.9273 2 Median 0.89756 1.0367 2.9273 2 0 Median NaN NaN NaN 0 0 Median 61213000 30225000 30988000 61213000 30225000 30988000 0 0 0 11150 1887 11453 29419;29420 45914;45915;45916 45916 3 RETGVDLTK DFDQALLRHIVKEFKRETGVDLTKDNMALQ IVKEFKRETGVDLTKDNMALQRVREAAEKA K R E T K D 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 9 1 1017.5455 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;Q2F839 B7Z4V2 278 286 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0014687 93.111 2 2.4007 2.8296 3.7718 2 Median 2.4007 2.8296 3.7718 2 0 Median NaN NaN NaN 0 0 Median 94420000 26420000 68000000 94420000 26420000 68000000 0 0 0 11151 1092 11454 29421;29422 45917;45918 45917 2 REVDDLGPEVGDIK LTGQEEIDEACKRIKREVDDLGPEVGDIKI KREVDDLGPEVGDIKIIPLYSTLPPQQQQR K R E I K I 0 1 0 3 0 0 2 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 14 1 1540.7733 O43143;B4E0S6 O43143 371 384 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2;3 4.375E-05 86.772 4 3 1.1799 1.1668 16.346 6 Median 1.1831 1.3727 3.9986 3 0 Median 1.1767 1.0007 4.3649 3 0 Median 115020000 46667000 68352000 103050000 41241000 61811000 11967000 5426200 6540800 11152 1379 11455 29423;29424;29425;29426;29427;29428;29429 45919;45920;45921;45922;45923;45924;45925;45926;45927;45928;45929 45919 11 RFADFTVYR KRKLEMEDYPSFMAKRFADFTVYRNRTLQK PSFMAKRFADFTVYRNRTLQKWHDKTKLAS K R F Y R N 1 2 0 1 0 0 0 0 0 0 0 0 0 2 0 0 1 0 1 1 0 0 9 1 1173.5931 Q9NY61 Q9NY61 355 363 AATF Protein AATF yes yes 2 0.05391 45.161 1 1.7755 1.6318 NaN 1 Median NaN NaN NaN 0 0 Median 1.7755 1.6318 NaN 1 0 Median 13148000 4865000 8283200 0 0 0 13148000 4865000 8283200 11153 2080 11456 29430 45930 45930 1 RFALEQQR GEYNSNMSPEEKMMKRFALEQQRHHEKKSI PEEKMMKRFALEQQRHHEKKSIYNLNEDEE K R F Q R H 1 2 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 1 1046.5621 A8KA74;P78316;E9PFK5 A8KA74 104 111 NOP14 Nucleolar protein 14 yes no 2 0.011218 86.136 1 0.91674 0.99818 NaN 1 Median 0.91674 0.99818 NaN 1 0 Median NaN NaN NaN 0 0 Median 77170000 40161000 37009000 77170000 40161000 37009000 0 0 0 11154 790 11457 29431 45931 45931 1 RFDDAVVQSDMK NPTNTVFDAKRLIGRRFDDAVVQSDMKHWP IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV R R F M K H 1 1 0 3 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 12 1 1409.6609 E9PN89;A4D111;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;E9PNE6;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 V9HW22 77 88 HSPA8;LOC401308;HEL-S-72p Heat shock cognate 71 kDa protein no no 2;3 1.3057E-16 126.66 5 2 1.7555 1.7381 23.685 4 Median 1.8031 2.0649 6.6764 2 0 Median 1.6837 1.4048 12.432 2 0 Median 60350000 25099000 35251000 52369000 22377000 29992000 7980900 2721500 5259400 11155 1467;1248 11458;11459 29432;29433;29434;29435;29436;29437;29438 45932;45933;45934;45935;45936;45937;45938;45939;45940;45941;45942 45933 956 11 RFDDPGLMLMGFK SRQIILEKEETEELKRFDDPGLMLMGFKPL LKRFDDPGLMLMGFKPLVLLKKHHYLRPSL K R F F K P 0 1 0 2 0 0 0 2 0 0 2 1 2 2 1 0 0 0 0 0 0 0 13 1 1525.7421 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 339 351 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.00028552 57.434 2 0.79798 0.94519 0.12816 2 Median 0.79798 0.94519 0.12816 2 0 Median NaN NaN NaN 0 0 Median 114140000 62141000 51998000 114140000 62141000 51998000 0 0 0 11156 82 11460 29439;29440 45943;45944 45943 76;77 2 RFDDPGLMLMGFKPLVLLK SRQIILEKEETEELKRFDDPGLMLMGFKPL PGLMLMGFKPLVLLKKHHYLRPSLFVYPEE K R F L K K 0 1 0 2 0 0 0 2 0 0 5 2 2 2 2 0 0 0 0 1 0 0 19 2 2189.2105 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 339 357 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 4.7934E-07 72.421 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7749700 7749700 0 0 0 0 7749700 7749700 0 11157 82 11461 29441 45945 45945 76;77 1 RFDTEEEFK PPIGDLQVFYKESKKRFDTEEEFKKRAYQC YKESKKRFDTEEEFKKRAYQCVVLLQGKNP K R F F K K 0 1 0 1 0 0 3 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 9 1 1199.5459 P54136;B4DXW6 P54136 279 287 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.02967 53.751 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7628300 0 7628300 7628300 0 7628300 0 0 0 11158 1609 11462 29442 45946 45946 1 RFEIINAIYEPTEEECEWKPDEEDEISEELK LERKYAVLYQPLFDKRFEIINAIYEPTEEE EWKPDEEDEISEELKEKAKIEDEKKDEEKE K R F L K E 1 1 1 2 1 0 11 0 0 4 1 2 0 1 2 1 1 1 1 0 0 0 31 2 3868.7513 F8VY35;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8W118;F8VV59;A0A024RBE6;H0YH88;F8W543;F8VRJ2 F8VY35 117 147 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 4 2.2605E-08 48.449 2 1.333 1.3387 10.145 2 Median NaN NaN NaN 0 0 Median 1.333 1.3387 10.145 2 0 Median 15900000 6401200 9498300 0 0 0 15900000 6401200 9498300 11159 332 11463 29443;29444 45947;45948;45949 45948 3 RFFMGNQVLK CFSVLGFCKSSQVQRRFFMGNQVLKVFAAR SQVQRRFFMGNQVLKVFAARDDEAAAVALS R R F L K V 0 1 1 0 0 1 0 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 10 1 1238.6594 P13010;Q53T09 P13010 354 363 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.026628 51.854 1 0.55225 0.64028 NaN 1 Median 0.55225 0.64028 NaN 1 0 Median NaN NaN NaN 0 0 Median 35523000 22869000 12654000 35523000 22869000 12654000 0 0 0 11160 1476 11464 29445 45950 45950 1219 1 RFGEYNSNMSPEEK KEYKERDKSNVFRDKRFGEYNSNMSPEEKM KRFGEYNSNMSPEEKMMKRFALEQQRHHEK K R F E K M 0 1 2 0 0 0 3 1 0 0 0 1 1 1 1 2 0 0 1 0 0 0 14 1 1686.7308 A8KA74;P78316;E9PFK5 A8KA74 87 100 NOP14 Nucleolar protein 14 yes no 2 0.024906 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11161 790 11465 29446 45951 45951 630 1 RFGFPEGSVELYAEK EKGRRIRELTAVVQKRFGFPEGSVELYAEK RFGFPEGSVELYAEKVATRGLCAIAQAESL K R F E K V 1 1 0 0 0 0 3 2 0 0 1 1 0 2 1 1 0 0 1 1 0 0 15 1 1727.8519 P23396;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;A7E2S3 P23396 76 90 RPS3 40S ribosomal protein S3 yes no 2;3 9.0503E-16 103.01 10 2 1.0163 1.097 25.557 6 Median 1.095 1.2511 14.641 4 0 Median 0.91578 0.77707 3.8845 2 0 Median 193830000 75855000 117970000 175180000 66706000 108480000 18644000 9149000 9494500 11162 1511 11466 29447;29448;29449;29450;29451;29452;29453;29454;29455;29456;29457;29458 45952;45953;45954;45955;45956;45957;45958;45959;45960;45961;45962;45963;45964;45965;45966;45967;45968;45969;45970 45961 19 RFGPHGIPVTVFPK FGEKLFSGVLMDLSKRFGPHGIPVTVFPKR KRFGPHGIPVTVFPKREYKDKPEAMPLQSN K R F P K R 0 1 0 0 0 0 0 2 1 1 0 1 0 2 3 0 1 0 0 2 0 0 14 1 1550.8722 Q96N64 Q96N64 195 208 PWWP2A PWWP domain-containing protein 2A yes yes 3 0.032052 19.694 2 1.6773 1.4708 14.156 2 Median NaN NaN NaN 0 0 Median 1.6773 1.4708 14.156 2 0 Median 3613800 1608900 2004900 0 0 0 3613800 1608900 2004900 11163 1980 11467 29459;29460 45971;45972 45971 2 RFGVPVIADGGIQNVGHIAK RPQATAVYKVSEYARRFGVPVIADGGIQNV VIADGGIQNVGHIAKALALGASTVMMGSLL R R F A K A 2 1 1 1 0 1 0 4 1 3 0 1 0 1 1 0 0 0 0 3 0 0 20 1 2047.1327 H0Y4R1;P12268 H0Y4R1 312 331 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3 8.2185E-08 84.499 2 1.1965 1.0237 1.8078 2 Median NaN NaN NaN 0 0 Median 1.1965 1.0237 1.8078 2 0 Median 28015000 13679000 14336000 0 0 0 28015000 13679000 14336000 11164 1282 11468 29461;29462 45973;45974;45975;45976 45974 4 RFNIPPSTLSTILK EVEENPDLRKGEIARRFNIPPSTLSTILKN RRFNIPPSTLSTILKNKRAILASERKYGVA R R F L K N 0 1 1 0 0 0 0 0 0 2 2 1 0 1 2 2 2 0 0 0 0 0 14 1 1585.9192 P07199;Q71VN4 P07199 34 47 CENPB Major centromere autoantigen B yes no 3 0.036328 28.351 2 1 1.7716 1.5254 NaN 1 Median NaN NaN NaN 0 0 Median 1.7716 1.5254 NaN 1 0 Median 4921300 626380 4294900 3038200 0 3038200 1883100 626380 1256700 11165 1450 11469 29463;29464;29465 45977;45978;45979 45977 3 RFPELESLVPNALDYIR ELNIIHKFIRDKYSKRFPELESLVPNALDY PELESLVPNALDYIRTVKELGNSLDKCKNN K R F I R T 1 2 1 1 0 0 2 0 0 1 3 0 0 1 2 1 0 0 1 1 0 0 17 1 2031.0789 B4DWW8;E7EVX8;Q8WWY3;E7EU94;E7ESX0;E7EN72 B4DWW8 121 137 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 3 0.0026456 31.41 1 0.83898 0.94412 NaN 1 Median 0.83898 0.94412 NaN 1 0 Median NaN NaN NaN 0 0 Median 5527700 2827500 2700200 5527700 2827500 2700200 0 0 0 11166 1046 11470 29466 45980 45980 1 RFPGYDSESK KGAVDGGLSIPHSTKRFPGYDSESKEFNAE PHSTKRFPGYDSESKEFNAEVHRKHIMGQN K R F S K E 0 1 0 1 0 0 1 1 0 0 0 1 0 1 1 2 0 0 1 0 0 0 10 1 1184.5462 A2RUM7;P46777;Q59GX9;B3KTM6 A2RUM7 179 188 RPL5 60S ribosomal protein L5 yes no 2 1.4994E-30 185.6 2 2 0.90565 1.1499 19.874 4 Linear 0.91907 1.1077 4.8566 2 0 Median 0.90565 0.79161 5.6922 2 0 Median 1457800000 749980000 707810000 1311500000 674970000 636510000 146310000 75011000 71299000 11167 653 11471 29467;29468;29469;29470 45981;45982;45983;45984;45985;45986;45987;45988;45989 45984 9 RFPVAPLIPYPLITK HPRKKKKEKKEDIFRRFPVAPLIPYPLITK RFPVAPLIPYPLITKEDINAIEMEEDKRDL R R F T K E 1 1 0 0 0 0 0 0 0 2 2 1 0 1 4 0 1 0 1 1 0 0 15 1 1724.0389 P49756;H0YE46 P49756 247 261 RBM25 RNA-binding protein 25 yes no 3 0.0049129 31.389 2 2 1.1417 1.1365 31.05 4 Median 1.2731 1.3972 11.348 2 0 Median 0.97659 0.86309 21.052 2 0 Median 22991000 10116000 12875000 19814000 8536300 11277000 3177500 1579600 1597900 11168 1587 11472 29471;29472;29473;29474 45990;45991;45992;45993;45994;45995;45996 45990 7 RFQDGAIR AAKFRQFWGSRSELRRFQDGAIREAVVWEA GSRSELRRFQDGAIREAVVWEAASMSQKRL R R F I R E 1 2 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 8 1 961.50936 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 591 598 NOL6 Nucleolar protein 6 yes no 2 0.018014 71.501 1 1.1229 1.2178 NaN 1 Median 1.1229 1.2178 NaN 1 0 Median NaN NaN NaN 0 0 Median 17309000 8591600 8717700 17309000 8591600 8717700 0 0 0 11169 2038 11473 29475 45997 45997 1 RFQLPLDK SPSVPGPTKPKPKTKRFQLPLDKGNGKKHK KPKPKTKRFQLPLDKGNGKKHKVSHLRTSS K R F D K G 0 1 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 0 0 0 0 8 1 1015.5815 Q03164;B4E012 Q03164 3542 3549 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.025232 61.999 1 0.77591 0.87695 NaN 1 Median 0.77591 0.87695 NaN 1 0 Median NaN NaN NaN 0 0 Median 15452000 8172700 7279000 15452000 8172700 7279000 0 0 0 11170 1680 11474 29476 45998 45998 1 RFQQAVDAVEEFLR YHAHKEEMIKINKGKRFQQAVDAVEEFLRR KRFQQAVDAVEEFLRRAKGKDQTSSHNSSD K R F L R R 2 2 0 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 14 1 1706.874 D3DUE6;K7EMM8;D3DUE7;Q49A26;K7EQB2 D3DUE7 100 113 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 3 3.1881E-05 80.632 4 2 1.9983 1.7423 4.6409 3 Median 1.7667 1.7423 NaN 1 0 Median 2.0091 1.7613 6.5032 2 0 Median 26597000 9587500 17009000 6680300 2271600 4408800 19917000 7315900 12601000 11171 1194;1193;1346 11475 29477;29478;29479;29480;29481;29482 45999;46000;46001;46002;46003;46004;46005;46006 46004 8 RFSCIIGPNGSGK FKSYAGEKILGPFHKRFSCIIGPNGSGKSN HKRFSCIIGPNGSGKSNVIDSMLFVFGYRA K R F G K S 0 1 1 0 1 0 0 3 0 2 0 1 0 1 1 2 0 0 0 0 0 0 13 1 1391.698 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 107 119 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein no no 2 0.0016103 74.78 2 0.83029 0.88879 NaN 1 Median 0.83029 0.88879 NaN 1 0 Median NaN NaN NaN 0 0 Median 21850000 16204000 5646900 21850000 16204000 5646900 0 0 0 11172 2070;1136 11476 29483;29484 46007;46008 46008 2 RFSGTVR ELQISLKNYDPQKDKRFSGTVRLKSTPRPK NYDPQKDKRFSGTVRLKSTPRPKFSVCVLG K R F V R L 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 7 1 821.45079 P62906;Q1JQ76 P62906 48 54 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 0.017069 122.18 1 0.88235 0.96461 NaN 1 Median 0.88235 0.96461 NaN 1 0 Median NaN NaN NaN 0 0 Median 293640000 151940000 141700000 293640000 151940000 141700000 0 0 0 11173 1651 11477 29485 46009 46009 1 RFSQMLQDK GKPKSGRVWKDRSKKRFSQMLQDKPLRTSW KDRSKKRFSQMLQDKPLRTSWQRKMKERQE K R F D K P 0 1 0 1 0 2 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 9 1 1151.5757 Q9H6F5 Q9H6F5 253 261 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.00043085 99.013 4 0.91697 1.0781 16.388 3 Median 0.91697 1.0781 16.388 3 0 Median NaN NaN NaN 0 0 Median 175740000 97157000 78581000 175740000 97157000 78581000 0 0 0 11174 2037 11478 29486;29487;29488;29489 46010;46011;46012;46013 46013 1872 4 RFVDPNTQEK KDIYALISDQKHMRKRFVDPNTQEKVSYRE KHMRKRFVDPNTQEKVSYRELQERCRPQED K R F E K V 0 1 1 1 0 1 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 10 1 1232.6149 A0A075B730;A0A087X1U6;P58107 A0A075B730 2028 2037 EPPK1 Epiplakin no no 2 4.6726E-09 126.07 1 1.7764 1.9792 NaN 1 Median 1.7764 1.9792 NaN 1 0 Median NaN NaN NaN 0 0 Median 20108000 7130100 12978000 20108000 7130100 12978000 0 0 0 11175 397;1622 11479 29490 46014;46015 46014 2 RFVEVGR ______________________________ ______________________________ R R F G R V 0 2 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 1 861.48209 E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914;A8K3Q9 A8K3Q9 5 11 RPL14 60S ribosomal protein L14 no no 2 0.016795 117.1 1 0.7689 0.83721 NaN 1 Median 0.7689 0.83721 NaN 1 0 Median NaN NaN NaN 0 0 Median 77394000 44534000 32860000 77394000 44534000 32860000 0 0 0 11176 645;725 11480 29491 46016 46016 1 RFVNVVPTFGK KKKTGRAKRRMQYNRRFVNVVPTFGKKKGP QYNRRFVNVVPTFGKKKGPNANS_______ R R F G K K 0 1 1 0 0 0 0 1 0 0 0 1 0 2 1 0 1 0 0 3 0 0 11 1 1262.7135 E9PR30;P62861 E9PR30 80 90 FAU 40S ribosomal protein S30 yes no 2;3 1.3117E-05 109.66 5 4 0.68466 0.69779 37.747 8 Median 0.82907 0.97496 4.6501 4 0 Median 0.57038 0.48829 2.4736 4 0 Median 519110000 296180000 222930000 386980000 212220000 174760000 132130000 83955000 48175000 11177 1250 11481 29492;29493;29494;29495;29496;29497;29498;29499;29500 46017;46018;46019;46020;46021;46022;46023;46024;46025;46026;46027;46028;46029;46030;46031;46032;46033 46023 16 RFYPAEWQDFLDSLQK QDTPKQIRSKINVYKRFYPAEWQDFLDSLQ FYPAEWQDFLDSLQKRKMEVE_________ K R F Q K R 1 1 0 2 0 2 1 0 0 0 2 1 0 2 1 1 0 1 1 0 0 0 16 1 2041.9898 Q9Y3C1 Q9Y3C1 157 172 NOP16 Nucleolar protein 16 yes yes 3 0.00016408 48.547 2 0.87725 0.72825 21.285 2 Median NaN NaN NaN 0 0 Median 0.87725 0.72825 21.285 2 0 Median 9157200 4883600 4273600 0 0 0 9157200 4883600 4273600 11178 2135 11482 29501;29502 46034;46035;46036 46034 3 RGAPAAATAPAPTAHK SFKLNRKKLEGGGERRGAPAAATAPAPTAH GAPAAATAPAPTAHKAKKAAPGAAGSRRAD R R G H K A 7 1 0 0 0 0 0 1 1 0 0 1 0 0 3 0 2 0 0 0 0 0 16 1 1486.8005 Q92522 Q92522 128 143 H1FX Histone H1x yes yes 2;3;4 8.0282E-05 54.281 3 3 0.71919 0.73688 44.431 6 Median 0.87453 1.0433 10.275 3 0 Median 0.59181 0.51476 6.1059 3 0 Plateau 293770000 162330000 131440000 219530000 115000000 104530000 74241000 47330000 26911000 11179 1946 11483 29503;29504;29505;29506;29507;29508 46037;46038;46039;46040;46041;46042;46043 46040 7 RGAPPSSNIEDFHGLLPK RGPGPLQERSLFEKKRGAPPSSNIEDFHGL PPSSNIEDFHGLLPKGYPHLCSICDLPVHS K R G P K G 1 1 1 1 0 0 1 2 1 1 2 1 0 1 3 2 0 0 0 0 0 0 18 1 1934.001 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991;H0Y8T4 D6REM6 270 287 MATR3;DKFZp686K23100 Matrin-3 yes no 3 0.042332 12.792 1 1.0288 0.88851 NaN 1 Median NaN NaN NaN 0 0 Median 1.0288 0.88851 NaN 1 0 Median 2137300 1133600 1003700 0 0 0 2137300 1133600 1003700 11180 542 11484 29509 46044 46044 1 RGDIIGVQGNPGK YKSEEEFIHINNKLRRGDIIGVQGNPGKTK LRRGDIIGVQGNPGKTKKGELSIIPYEITL R R G G K T 0 1 1 1 0 1 0 4 0 2 0 1 0 0 1 0 0 0 0 1 0 0 13 1 1309.7102 Q15046;J3KRL2;H3BPV7;H3BVA8 Q15046 178 190 KARS Lysine--tRNA ligase yes no 2 0.0012265 77.062 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7978400 0 7978400 7978400 0 7978400 0 0 0 11181 1749 11485 29510 46045 46045 1 RGDLPFVVPR DAMNREVSSLKNKLRRGDLPFVVPRRMARK KNKLRRGDLPFVVPRRMARKGAGDGSDEEV R R G P R R 0 2 0 1 0 0 0 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 10 1 1154.656 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1923 1932 MYH9;FLJ00279 Myosin-9 yes no 2;3 0.00086631 67.113 2 2 2.2956 2.2727 16.465 4 Median 1.7052 1.911 13.732 2 0 Median 2.7312 2.4537 0.062696 2 0 Median 106980000 42051000 64934000 102270000 40849000 61421000 4714000 1201500 3512500 11182 81 11486 29511;29512;29513;29514 46046;46047;46048;46049 46046 4 RGDTVATLSER VDAGQIILQEAVPVKRGDTVATLSERVKLA VPVKRGDTVATLSERVKLAEHKIFPAALQL K R G E R V 1 2 0 1 0 0 1 1 0 0 1 0 0 0 0 1 2 0 0 1 0 0 11 1 1203.6208 Q3B7A7;Q59HH3;P22102;B4DJ93 Q3B7A7 965 975 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.00057093 86.114 2 3.7198 4.166 2.4841 2 Median 3.7198 4.166 2.4841 2 0 Median NaN NaN NaN 0 0 Median 102540000 25773000 76767000 102540000 25773000 76767000 0 0 0 11183 1507 11487 29515;29516 46050;46051 46051 2 RGEGEDEVEEESTALQK TAKVAEIRDQKADKKRGEGEDEVEEESTAL EGEDEVEEESTALQKTDKKEILKKSEKDTN K R G Q K T 1 1 0 1 0 1 6 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 17 1 1904.8599 Q96T23;H0YCN2;H0YEX0 Q96T23 800 816 RSF1 Remodeling and spacing factor 1 yes no 3 7.9643E-08 97.214 2 2 0.79476 0.6768 13.699 3 Median 0.53825 0.62203 NaN 1 0 Median 0.85802 0.74185 12.978 2 0 Median 35240000 22970000 12269000 31496000 21031000 10464000 3744000 1938900 1805100 11184 1991 11488 29517;29518;29519;29520 46052;46053;46054;46055;46056;46057;46058 46054 7 RGEYIYTGNAK VDDDSDLNVVASFDRRGEYIYTGNAKGKIL SFDRRGEYIYTGNAKGKILVLKTDSQDLVA R R G A K G 1 1 1 0 0 0 1 2 0 1 0 1 0 0 0 0 1 0 2 0 0 0 11 1 1270.6306 A0A024R9B5;B4DMM7;Q15291;B4DLF8 A0A024R9B5 162 172 RBBP5 Retinoblastoma-binding protein 5 yes no 2 5.6409E-05 91.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11185 272 11489 29521 46059 46059 1 RGFSDSGGGPPAK SGPGGGRGRGSLLLRRGFSDSGGGPPAKQR LRRGFSDSGGGPPAKQRDLEGAVSRLGGER R R G A K Q 1 1 0 1 0 0 0 4 0 0 0 1 0 1 2 2 0 0 0 0 0 0 13 1 1231.5945 Q9H307;A8K964;G3V5F0;G3V579 Q9H307 63 75 PNN Pinin yes no 2 0.016887 57.836 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11186 2028 11490 29522 46060 46060 1 RGFVLQDTVEQLR QQTKITQDIFQQLLKRGFVLQDTVEQLRCE LKRGFVLQDTVEQLRCEHCARFLADRFVEG K R G L R C 0 2 0 1 0 2 1 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 13 1 1559.842 A8K492;P56192;B4DF61;B4E0E9;H0YHV5 A8K492 376 388 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 0.027949 33.204 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1109600 0 1109600 0 0 0 1109600 0 1109600 11187 732 11491 29523 46061 46061 1 RGGFAVQAK ______________________________ ATKRKRRGGFAVQAKKPKRNEIDAEPPAKR R R G A K K 2 1 0 0 0 1 0 2 0 0 0 1 0 1 0 0 0 0 0 1 0 0 9 1 932.5192 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4;Q05CP8 Q8TDN6 9 17 BRIX1;BXDC2;CCDC6 Ribosome biogenesis protein BRX1 homolog no no 2 0.0082788 67.981 2 1 1.4934 1.4919 27.061 2 Median 1.5205 1.8065 NaN 1 0 Median 1.4668 1.2321 NaN 1 0 Median 62679000 14637000 48042000 57906000 12693000 45213000 4773700 1944400 2829300 11188 1934;1686 11492 29524;29525;29526 46062;46063;46064 46062 3 RGGPNYQEGLR YQGPLKEHEVTIFVRRGGPNYQEGLRVMGE IFVRRGGPNYQEGLRVMGEVGKTTGIPIHV R R G L R V 0 2 1 0 0 1 1 3 0 0 1 0 0 0 1 0 0 0 1 0 0 0 11 1 1245.6214 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;K7EIE7 A0A024R1Y2 379 389 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.02969 45.161 1 1.7503 1.9238 NaN 1 Median 1.7503 1.9238 NaN 1 0 Median NaN NaN NaN 0 0 Median 12175000 4531100 7643400 12175000 4531100 7643400 0 0 0 11189 89 11493 29527 46065 46065 1 RGGSPAVTLLISEK EINDIKDTDVIMKRKRGGSPAVTLLISEKI KRGGSPAVTLLISEKISVDITLALESKSSW K R G E K I 1 1 0 0 0 0 1 2 0 1 2 1 0 0 1 2 1 0 0 1 0 0 14 1 1426.8144 Q8N884 Q8N884 302 315 MB21D1 Cyclic GMP-AMP synthase yes yes 2;3 5.9316E-05 71.176 3 4 1.5159 1.9702 21.666 6 Linear 1.6153 1.9035 4.2344 3 0 Median 1.5008 1.3019 3.8502 3 0 Plateau 153030000 56161000 96871000 107480000 39005000 68478000 45549000 17156000 28393000 11190 1914 11494 29528;29529;29530;29531;29532;29533;29534 46066;46067;46068;46069;46070;46071;46072 46070 6 RGIEKPPFELPDFIK VPRHWCFKRKYLQGKRGIEKPPFELPDFIK RGIEKPPFELPDFIKRTGIQEMREALQEKE K R G I K R 0 1 0 1 0 0 2 1 0 2 1 2 0 2 3 0 0 0 0 0 0 0 15 2 1784.9825 Q13435;Q7Z3K9;E9PPJ0 Q13435 515 529 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 3 0.01495 32.997 1 0.58406 0.5686 NaN 1 Median NaN NaN NaN 0 0 Median 0.58406 0.5686 NaN 1 0 Median 3079300 1798900 1280400 0 0 0 3079300 1798900 1280400 11191 1713 11495 29535 46073 46073 1 RGILTLK MGQKDSYVGDEAQSKRGILTLKYPIEHGIV VGDEAQSKRGILTLKYPIEHGIVTNWDDME K R G L K Y 0 1 0 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 7 1 799.52797 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q7Z7J6;A6NL76;Q13707;B4DUI8;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;C9JUM1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B3KUD3;G5E9R0;E7EVS6;C9JTX5;C9JZR7;Q6S8J3;A5A3E0;P0CG38;L0R5C4;P0CG39;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282 P63261 62 68 ACTA2;ACTG2;ACTA1;ACTC1;ACTB;PS1TP5BP1;POTEE;POTEF;POTEI;POTEM;POTEJ;ACTG1 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 0.02692 98.418 1 1 2.3222 2.3882 6.3427 2 Median 2.0269 2.4978 NaN 1 0 Median 2.6606 2.2835 NaN 1 0 Median 3917200000 1290400000 2626800000 3701400000 1235700000 2465700000 215820000 54732000 161090000 11192 1624;1656;1100 11496 29536;29537 46074;46075 46074 2 RGIPGLPDGR APATSEMTTTPERPRRGIPGLPDGRFHLPP PERPRRGIPGLPDGRFHLPPRIHRASDPGL R R G G R F 0 2 0 1 0 0 0 3 0 1 1 0 0 0 2 0 0 0 0 0 0 0 10 1 1036.5778 Q53SY7;F8VPD4;P27708;H7BZB3 Q53SY7 1765 1774 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.040566 44.98 1 0.79501 0.83733 NaN 1 Median 0.79501 0.83733 NaN 1 0 Median NaN NaN NaN 0 0 Median 14201000 6383600 7817300 14201000 6383600 7817300 0 0 0 11193 1259 11497 29538 46076 46076 0 RGLESDVAELR FHRSEVELAAALSDKRGLESDVAELRAQLA LSDKRGLESDVAELRAQLAKAEDGHAVAKK K R G L R A 1 2 0 1 0 0 2 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 1 1243.6521 Q03252 Q03252 171 181 LMNB2 Lamin-B2 yes yes 2 0.0051104 60.518 1 1.1408 1.2386 NaN 1 Median 1.1408 1.2386 NaN 1 0 Median NaN NaN NaN 0 0 Median 30102000 14791000 15312000 30102000 14791000 15312000 0 0 0 11194 1682 11498 29539 46077 46077 1 RGLFDEEMNEILTDPSDDTK DPEESHRLPVEVAYKRGLFDEEMNEILTDP EEMNEILTDPSDDTKGFFDPNTEENLTYLQ K R G T K G 0 1 1 4 0 0 3 1 0 1 2 1 1 1 1 1 2 0 0 0 0 0 20 1 2324.0478 Q15149;D3DWL0;Q96IE3 Q15149 4206 4225 PLEC;PLEC1 Plectin yes no 3 0.00072611 46.569 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11195 1754 11499 29540;29541 46078;46079 46078 1616 2 RGNLNFTCDGNSVISPVGNR KFAYRFSNLLGTVYRRGNLNFTCDGNSVIS FTCDGNSVISPVGNRVTVFDLKNNKSDTLP R R G N R V 0 2 4 1 1 0 0 3 0 1 1 0 0 1 1 2 1 0 0 2 0 0 20 1 2176.0443 Q15269;C9J544 Q15269 17 36 PWP2 Periodic tryptophan protein 2 homolog yes no 3 0.0001934 35.973 2 1.1024 1.0027 NaN 1 Median NaN NaN NaN 0 0 Median 1.1024 1.0027 NaN 1 0 Median 3855400 2653200 1202100 0 0 0 3855400 2653200 1202100 11196 1756 11500 29542;29543 46080;46081 46080 2 RGPCIIYNEDNGIIK RAGKGKMRNRRRIQRRGPCIIYNEDNGIIK RGPCIIYNEDNGIIKAFRNIPGITLLNVSK R R G I K A 0 1 2 1 1 0 1 2 0 4 0 1 0 0 1 0 0 0 1 0 0 0 15 1 1760.888 P36578;Q59GY2;B4DMJ6;H3BM89;B4DFI6;Q53G74;B4DMJ2 P36578 205 219 RPL4 60S ribosomal protein L4 yes no 2;3 1.2651E-15 104.17 4 2 0.81905 0.90168 6.28 6 Median 0.8106 0.92878 4.7378 4 0 Median 0.97625 0.84451 1.89 2 0 Median 425950000 218640000 207300000 361030000 186150000 174870000 64920000 32489000 32431000 11197 1548 11501 29544;29545;29546;29547;29548;29549 46082;46083;46084;46085;46086;46087;46088;46089;46090;46091;46092;46093;46094 46090 13 RGPFELEAFYSDPQGVPYPEAK RNHAAPFSKVLTFLRRGPFELEAFYSDPQG AFYSDPQGVPYPEAKIGRFVVQNVSAQKDG R R G A K I 2 1 0 1 0 1 3 2 0 0 1 1 0 2 4 1 0 0 2 1 0 0 22 1 2496.1961 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 437 458 HSPH1 Heat shock protein 105 kDa yes no 3 9.1069E-07 49.076 2 2.0487 2.2485 18.579 2 Median 2.0487 2.2485 18.579 2 0 Median NaN NaN NaN 0 0 Median 26812000 11758000 15054000 26812000 11758000 15054000 0 0 0 11198 390 11502 29550;29551 46095;46096;46097;46098 46095 4 RGPNYTSGYGTNSELSNPSETESER SVQGSRSYSGRGRGRRGPNYTSGYGTNSEL TNSELSNPSETESERKDELSDWSLAGEDDR R R G E R K 0 2 3 0 0 0 4 3 0 0 1 0 0 0 2 5 3 0 2 0 0 0 25 1 2731.1958 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 420 444 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 1.1628E-12 71.418 2 1 0.6985 0.75594 20.597 3 Median 0.57945 0.63816 23.954 2 0 Median 0.87173 0.78178 NaN 1 0 Median 52062000 30861000 21201000 49700000 29548000 20151000 2362400 1312900 1049500 11199 531 11503 29552;29553;29554 46099;46100;46101;46102;46103 46101 5 RGPQLVCTGSDDGTVK LKGHTSFVNSCYPARRGPQLVCTGSDDGTV GPQLVCTGSDDGTVKLWDIRKKAAIQTFRN R R G V K L 0 1 0 2 1 1 0 3 0 0 1 1 0 0 1 1 2 0 0 2 0 0 16 1 1688.8152 B2R9I9;A0MNP2;Q96DI7 B2R9I9 162 177 WDR57;SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2;3 0.00044044 59.57 5 2 0.85247 0.88261 15.011 5 Median 0.85247 0.92378 11.995 3 0 Median 0.92548 0.79638 14.539 2 0 Median 66482000 35883000 30600000 61409000 33333000 28076000 5073600 2549600 2524000 11200 643 11504 29555;29556;29557;29558;29559;29560;29561 46104;46105;46106;46107;46108;46109;46110;46111 46105 8 RGRPAATEVK VTTATASVNLKVSPKRGRPAATEVKIPKPR KVSPKRGRPAATEVKIPKPRGRPKMVKQPC K R G V K I 2 2 0 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 10 2 1083.6149 O75475;Q05CM9 O75475 180 189 PSIP1 PC4 and SFRS1-interacting protein yes no 3 0.016462 50.978 1 0.54733 0.59309 NaN 1 Median 0.54733 0.59309 NaN 1 0 Median NaN NaN NaN 0 0 Median 10417000 6869000 3548400 10417000 6869000 3548400 0 0 0 11201 1405 11505 29562 46112 46112 1 RGSDYETFK AYEWFEEWQAELKGKRGSDYETFKNSFVEA AELKGKRGSDYETFKNSFVEASMSVVLKLF K R G F K N 0 1 0 1 0 0 1 1 0 0 0 1 0 1 0 1 1 0 1 0 0 0 9 1 1101.5091 H7C3J0;B4DKE1;Q6NUM9;I0EZ74 H7C3J0 271 279 RETSAT All-trans-retinol 13,14-reductase yes no 2 0.041394 50.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2496200 2496200 0 2496200 2496200 0 0 0 0 11202 988 11506 29563 46113 46113 1 RGTGGVDTAATGGVFDISNLDR DSRFPKILENLRLQKRGTGGVDTAATGGVF TAATGGVFDISNLDRLGKSEVELVQLVIDG K R G D R L 2 2 1 3 0 0 0 5 0 1 1 0 0 1 0 1 3 0 0 2 0 0 22 1 2178.0665 P12532 P12532 353 374 CKMT1A Creatine kinase U-type, mitochondrial yes yes 3 1.4439E-08 60.133 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11203 1475 11507 29564;29565 46114;46115 46115 2 RGTGGVDTAAVGGVFDVSNADR HEKFSEVLKRLRLQKRGTGGVDTAAVGGVF TAAVGGVFDVSNADRLGFSEVELVQMVVDG K R G D R L 3 2 1 3 0 0 0 5 0 0 0 0 0 1 0 1 2 0 0 4 0 0 22 1 2120.0247 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;H0YJG0 V9HWH2 320 341 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 3 1.7074E-09 82.177 2 2 2.9628 2.644 40.231 3 Median 4.5084 5.0532 NaN 1 0 Median 2.8113 2.5283 6.3319 2 0 Median 52075000 6576700 45499000 47002000 5307200 41695000 5072800 1269400 3803300 11204 557 11508 29566;29567;29568;29569 46116;46117;46118;46119;46120 46117 5 RGTLSGAPAPPTR SDPPTRLSLSRSDERRGTLSGAPAPPTRHD ERRGTLSGAPAPPTRHDFSFDRVFPPGSGQ R R G T R H 2 2 0 0 0 0 0 2 0 0 1 0 0 0 3 1 2 0 0 0 0 0 13 1 1279.6997 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 357 369 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 3 0.012164 29.013 2 0.87851 0.95141 NaN 1 Median 0.87851 0.95141 NaN 1 0 Median NaN NaN NaN 0 0 Median 22233000 7555600 14677000 22233000 7555600 14677000 0 0 0 11205 371 11509 29570;29571 46121;46122 46121 1 RGTQPVGSLELK TTGPPHLVPPQPLPRRGTQPVGSLELKSAC LPRRGTQPVGSLELKSACQVTAGGSSQCYR R R G L K S 0 1 0 0 0 1 1 2 0 0 2 1 0 0 1 1 1 0 0 1 0 0 12 1 1283.7197 A0A024R0F1;Q9UNY4 A0A024R0F1 498 509 TTF2 Transcription termination factor 2 yes no 2 0.0039277 58.829 1 2 1.4807 1.2168 25.736 3 Median 0.69345 0.80329 NaN 1 0 Median 1.5021 1.2512 3.9432 2 0 Median 37414000 19534000 17880000 29176000 15830000 13345000 8238000 3703800 4534200 11206 44 11510 29572;29573;29574 46123;46124;46125;46126 46124 4 RGVVTLLSDYEVCK MEPQLRQLGLPTALKRGVVTLLSDYEVCKE KRGVVTLLSDYEVCKEGDVLTPEQARVLKL K R G C K E 0 1 0 1 1 0 1 1 0 0 2 1 0 0 0 1 1 0 1 3 0 0 14 1 1637.8447 A0A024RAE1;Q9UKD2 A0A024RAE1 164 177 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 3 0.0046665 46.926 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6805400 0 6805400 0 0 0 6805400 0 6805400 11207 302 11511 29575;29576 46127;46128 46127 2 RHATAEEVEEEER KKPKRNEIDAEPPAKRHATAEEVEEEERDR AKRHATAEEVEEEERDRIPGPVCKGKWKNK K R H E R D 2 2 0 0 0 0 6 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 13 1 1583.7176 Q8TDN6;B4E0B8;Q9NUW4 Q8TDN6 32 44 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3 0.038418 19.286 1 0.58965 0.57607 NaN 1 Median 0.58965 0.57607 NaN 1 0 Median NaN NaN NaN 0 0 Median 2087700 982830 1104800 2087700 982830 1104800 0 0 0 11208 1934 11512 29577 46129 46129 1 RHQELLQK EARRLRWLQQEEEERRHQELLQKKKEEEQE QQEEEERRHQELLQKKKEEEQERLRKAAEA R R H Q K K 0 1 0 0 0 2 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1050.5934 Q9NQS7;B3KPD3 Q9NQS7 659 666 INCENP Inner centromere protein yes no 3 0.0098998 47.574 1 1.0786 1.1707 NaN 1 Median 1.0786 1.1707 NaN 1 0 Median NaN NaN NaN 0 0 Median 9996900 4849500 5147400 9996900 4849500 5147400 0 0 0 11209 2059 11513 29578 46130;46131 46131 2 RHVTYVVAK QLRSLYKKAGLGKEKRHVTYVVAKKGVGRK GLGKEKRHVTYVVAKKGVGRKVRRPAGVRG K R H A K K 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 3 0 0 9 1 1071.6189 Q8IY81;B4DKU3 Q8IY81 796 804 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 3 0.00077793 72.643 1 0.68744 0.76022 NaN 1 Median 0.68744 0.76022 NaN 1 0 Median NaN NaN NaN 0 0 Median 7329200 4440400 2888800 7329200 4440400 2888800 0 0 0 11210 1898 11514 29579 46132 46132 1 RIAELSEDDQK INKPLIVVANKCDVKRIAELSEDDQKIFTD CDVKRIAELSEDDQKIFTDLQSEGFPVIET K R I Q K I 1 1 0 2 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1302.6416 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 293 303 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 1.7535E-65 218.43 2 2 1.2879 1.3562 5.2077 4 Median 1.1351 1.3562 1.5742 2 0 Median 1.5188 1.3236 8.5417 2 0 Median 443250000 187710000 255540000 319190000 147850000 171340000 124060000 39862000 84197000 11211 1183 11515 29580;29581;29582;29583 46133;46134;46135;46136;46137;46138;46139 46136 7 RIALTDNALIAR NELIYKRGYGKINKKRIALTDNALIARSLG NKKRIALTDNALIARSLGKYGIICMEDLIH K R I A R S 3 2 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 12 1 1325.7779 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 177 188 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 3 4.3061E-05 76.522 2 2 0.87185 0.86269 31.168 4 Median 1.0069 1.102 2.9364 2 0 Median 0.73691 0.64756 8.8798 2 0 Median 55732000 28948000 26784000 43583000 21991000 21592000 12150000 6957400 5192400 11212 240 11516 29584;29585;29586;29587 46140;46141;46142;46143;46144;46145 46142 6 RIANLQTDLSDGLR TFTRWCNEHLKCVSKRIANLQTDLSDGLRL KRIANLQTDLSDGLRLIALLEVLSQKKMHR K R I L R L 1 2 1 2 0 1 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 14 1 1570.8427 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 63 76 FLNA Filamin-A yes no 3 0.022895 33.265 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4118600 0 4118600 0 0 0 4118600 0 4118600 11213 1504 11517 29588;29589 46146;46147 46146 2 RIDELIESGK SSRKSKAELQSEERKRIDELIESGKEEGMK SEERKRIDELIESGKEEGMKIDLIDGKGRG K R I G K E 0 1 0 1 0 0 2 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 10 1 1158.6245 E3VVS3;A0A0C4DFR3;Q9NQR1;C9JKQ0 E3VVS3 175 184 SETD8 N-lysine methyltransferase SETD8 yes no 2 0.0012061 83.397 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16325000 0 16325000 16325000 0 16325000 0 0 0 11214 505 11518 29590;29591 46148;46149 46148 2 RIEELNK YVYFENSSSNPYLVRRIEELNKTANGNVEA SSNPYLVRRIEELNKTANGNVEAKVVCLFR R R I N K T 0 1 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 1 900.50288 A0A024R534;O94776;E7EQY4;E7EV10;Q9BTC8;E9PCS8;Q53SC0;E9PF88;H0YIT0;E7ESY4;Q13330;H7C3F3 A0A024R534 26 32 MTA2;MTA3;tmp_locus_6;MTA1 Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 no no 2 3.0729E-26 200.66 1 0.8282 1.0018 NaN 1 Median 0.8282 1.0018 NaN 1 0 Median NaN NaN NaN 0 0 Median 206850000 110000000 96848000 206850000 110000000 96848000 0 0 0 11215 168;1223;1221 11519 29592 46150 46150 1 RIEFAEQINK IEESQRKMNALFEGRRIEFAEQINKMEARP LFEGRRIEFAEQINKMEARPRRQSMKEKEH R R I N K M 1 1 1 0 0 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 10 1 1246.667 Q9H307;A8K964;B4DTD4 Q9H307 271 280 PNN Pinin yes no 2 0.0007586 86.624 2 1.397 1.6259 4.9164 2 Median 1.397 1.6259 4.9164 2 0 Median NaN NaN NaN 0 0 Median 60626000 29394000 31232000 60626000 29394000 31232000 0 0 0 11216 2028 11520 29593;29594 46151;46152;46153 46153 3 RIEPAEELNSNDMK EPVVIMKRSLRTSAKRIEPAEELNSNDMKT KRIEPAEELNSNDMKTNKEEHKLQDSVPEN K R I M K T 1 1 2 1 0 0 3 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 14 1 1644.7777 P46013 P46013 3058 3071 MKI67 Antigen KI-67 yes yes 2;3 2.7893E-06 102.9 4 6 2.2629 2.1055 24.953 8 Median 1.5799 1.7894 26.445 2 0 Median 2.6755 2.2757 23.673 6 0 Median 173660000 48273000 125390000 130920000 36449000 94467000 42742000 11824000 30918000 11217 1569 11521;11522 29595;29596;29597;29598;29599;29600;29601;29602;29603;29604 46154;46155;46156;46157;46158;46159;46160;46161;46162;46163;46164 46158 1335 11 RIGVPSATEIIK YQLVQVEQKAGIKFKRIGVPSATEIIKASS KFKRIGVPSATEIIKASSKDAIRLLDSVPP K R I I K A 1 1 0 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 1 0 0 12 1 1282.7609 Q9NR30 Q9NR30 562 573 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.00049843 73.067 2 4 1.1588 1.0374 15.252 6 Median 1.1784 1.3332 1.8548 2 0 Median 1.1588 0.99894 5.0748 4 0 Median 101620000 48219000 53406000 49481000 23925000 25555000 52144000 24294000 27851000 11218 2065 11523 29605;29606;29607;29608;29609;29610 46165;46166;46167;46168;46169;46170;46171;46172 46167 8 RIIDDSEITK RKEAYVHKSVMEELKRIIDDSEITKEDDAL MEELKRIIDDSEITKEDDALWPPPDRVGRQ K R I T K E 0 1 0 2 0 0 1 0 0 3 0 1 0 0 0 1 1 0 0 0 0 0 10 1 1188.635 F5H6P7;A0A023T6R1;P61326;Q96A72;F5H3U9;F5H6N1 F5H6P7 18 27 MAGOHB;FLJ10292;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 yes no 2 2.3816E-05 102.06 2 1.3855 1.5903 NaN 1 Median 1.3855 1.5903 NaN 1 0 Median NaN NaN NaN 0 0 Median 36149000 7796900 28352000 36149000 7796900 28352000 0 0 0 11219 3 11524 29611;29612 46173;46174 46174 2 RILELDQFK KNIYVLQELDNPGAKRILELDQFKGQQGQK DNPGAKRILELDQFKGQQGQKRFQDMMGHG K R I F K G 0 1 0 1 0 1 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 1 1160.6554 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9 A0A024R1N4 115 123 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.00057544 113.71 2 0.40534 0.48451 1.2773 2 Median 0.40534 0.48451 1.2773 2 0 Median NaN NaN NaN 0 0 Median 388240000 277130000 111110000 388240000 277130000 111110000 0 0 0 11220 82 11525 29613;29614 46175;46176;46177;46178;46179;46180 46179 6 RILEPDDFLDDLDDEDYEEDTPK DSLGEFPVTNSRARKRILEPDDFLDDLDDE LDDLDDEDYEEDTPKRRGKGKSKGKGVGSA K R I P K R 0 1 0 8 0 0 4 0 0 1 3 1 0 1 2 0 1 0 1 0 0 0 23 1 2796.2138 A0A024R582;J3KMZ8;Q92785 A0A024R582 156 178 DPF2 Zinc finger protein ubi-d4 yes no 3 0.001098 25.221 1 0.86239 0.96115 NaN 1 Median 0.86239 0.96115 NaN 1 0 Median NaN NaN NaN 0 0 Median 7355400 3514900 3840500 7355400 3514900 3840500 0 0 0 11221 174 11526 29615 46181 46181 1 RILGLLENF IGDGRSPEFRENEQKRILGLLENF______ RENEQKRILGLLENF_______________ K R I N F - 0 1 1 0 0 0 1 1 0 1 3 0 0 1 0 0 0 0 0 0 0 0 9 1 1073.6233 A0A087WUB9;Q8WYA6 A0A087WUB9 560 568 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.0036378 75.854 2 0.87925 0.90739 2.4574 2 Median 0.87925 0.90739 2.4574 2 0 Median NaN NaN NaN 0 0 Median 10494000 6087600 4406400 10494000 6087600 4406400 0 0 0 11222 409 11527 29616;29617 46182;46183;46184;46185 46185 4 RINPPLAK PSDPGKSKGTSHKRKRINPPLAKPKKGYSG GTSHKRKRINPPLAKPKKGYSGKPSSGGDR K R I A K P 1 1 1 0 0 0 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 8 1 907.56034 A0A0B4J291;Q8N8U2 A0A0B4J291 108 115 CDYL2 Chromodomain Y-like protein 2 yes no 2;3 0.0017379 113.1 2 1 1.1834 1.5121 21.016 3 Plateau 1.1596 1.3297 18.185 2 0 Median 1.1834 0.99702 NaN 1 0 Median 69887000 30036000 39850000 62405000 26602000 35804000 7481200 3434800 4046500 11223 503 11528 29618;29619;29620 46186;46187;46188;46189 46188 4 RINVELSTK KAAIAQLNGKEVKGKRINVELSTKGQKKGP KEVKGKRINVELSTKGQKKGPGLAVQSGDK K R I T K G 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 1 1058.6084 A0A0S2Z4Z0;Q96PK6;Q59GV2;A0A0S2Z567 A0A0S2Z4Z0 141 149 RBM14 RNA-binding protein 14 yes no 2 4.2476E-05 113.62 2 1.393 1.6572 3.1015 2 Median 1.393 1.6572 3.1015 2 0 Median NaN NaN NaN 0 0 Median 164870000 67299000 97573000 164870000 67299000 97573000 0 0 0 11224 571 11529 29621;29622 46190;46191;46192 46190 3 RIPEEILGK HMDGGSLDQVLKEAKRIPEEILGKVSIAVL VLKEAKRIPEEILGKVSIAVLRGLAYLREK K R I G K V 0 1 0 0 0 0 2 1 0 2 1 1 0 0 1 0 0 0 0 0 0 0 9 1 1053.6182 P36507;Q7Z370;G5E9C7 P36507 164 172 MAP2K2;DKFZp686L02273 Dual specificity mitogen-activated protein kinase kinase 2 yes no 2 0.021876 56.916 1 2.1029 2.4137 NaN 1 Median 2.1029 2.4137 NaN 1 0 Median NaN NaN NaN 0 0 Median 24453000 6045500 18407000 24453000 6045500 18407000 0 0 0 11225 1547 11530 29623 46193 46193 1 RIQDPTEDAEAEDTPR EDSGNVNGKKRNHTKRIQDPTEDAEAEDTP IQDPTEDAEAEDTPRKRLRTDKHSLRKRDT K R I P R K 2 2 0 3 0 1 3 0 0 1 0 0 0 0 2 0 2 0 0 0 0 0 16 1 1841.8391 O96028;Q05CW4;H0Y9L4 O96028 531 546 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 0.00021904 33.083 1 1.6599 1.5165 NaN 1 Median NaN NaN NaN 0 0 Median 1.6599 1.5165 NaN 1 0 Median 2046300 955690 1090600 0 0 0 2046300 955690 1090600 11226 1435 11531 29624 46194 46194 1 RIQDPTEDAEAEDTPRK EDSGNVNGKKRNHTKRIQDPTEDAEAEDTP QDPTEDAEAEDTPRKRLRTDKHSLRKRDTI K R I R K R 2 2 0 3 0 1 3 0 0 1 0 1 0 0 2 0 2 0 0 0 0 0 17 2 1969.9341 O96028;Q05CW4;H0Y9L4 O96028 531 547 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 0.0013366 41.257 1 1.8214 1.8103 NaN 1 Median NaN NaN NaN 0 0 Median 1.8214 1.8103 NaN 1 0 Median 1974800 729300 1245500 0 0 0 1974800 729300 1245500 11227 1435 11532 29625 46195 46195 1 RISAVSVAER NDRAAECNIVVTQPRRISAVSVAERVAFER VTQPRRISAVSVAERVAFERGEEPGKSCGY R R I E R V 2 2 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 10 1 1086.6146 Q08211;Q58F26;Q6PJK6 Q08211 447 456 DHX9 ATP-dependent RNA helicase A yes no 2 0.0004811 91.215 2 1.2678 1.4551 15.449 2 Median 1.2678 1.4551 15.449 2 0 Median NaN NaN NaN 0 0 Median 654810000 278330000 376470000 654810000 278330000 376470000 0 0 0 11228 1691 11533 29626;29627 46196;46197;46198 46196 3 RISAVSVAQR EGRGARCNVIITQPRRISAVSVAQRVSHEL ITQPRRISAVSVAQRVSHELGPSLRRNVGF R R I Q R V 2 2 0 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 10 1 1085.6305 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 465 474 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.040423 45.161 1 1.1789 1.2802 NaN 1 Median 1.1789 1.2802 NaN 1 0 Median NaN NaN NaN 0 0 Median 31677000 13852000 17825000 31677000 13852000 17825000 0 0 0 11229 122 11534 29628 46199 46199 1 RISGLIYEETR TKPAIRRLARRGGVKRISGLIYEETRGVLK GGVKRISGLIYEETRGVLKVFLENVIRDAV K R I T R G 0 2 0 0 0 0 2 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 11 1 1335.7147 B2R4R0;P62805;Q0VAS5;Q6B823 B2R4R0 46 56 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 9.2192E-23 169.21 33 8 0.67777 0.72314 35.233 26 Median 0.66419 0.72832 31.859 19 0 Median 0.69465 0.67676 45.539 7 0 Median 57386000000 38831000000 18555000000 53395000000 36571000000 16824000000 3991200000 2260200000 1730900000 11230 828 11535 29629;29630;29631;29632;29633;29634;29635;29636;29637;29638;29639;29640;29641;29642;29643;29644;29645;29646;29647;29648;29649;29650;29651;29652;29653;29654;29655;29656;29657;29658;29659;29660;29661;29662;29663;29664;29665;29666;29667;29668;29669 46200;46201;46202;46203;46204;46205;46206;46207;46208;46209;46210;46211;46212;46213;46214;46215;46216;46217;46218;46219;46220;46221;46222;46223;46224;46225;46226;46227;46228;46229;46230;46231;46232;46233;46234;46235;46236;46237;46238;46239;46240;46241;46242;46243;46244;46245;46246;46247;46248;46249;46250;46251;46252;46253;46254;46255;46256;46257;46258;46259;46260;46261;46262;46263;46264;46265;46266;46267;46268;46269;46270;46271;46272;46273;46274;46275;46276;46277;46278;46279;46280;46281;46282;46283;46284;46285;46286;46287;46288;46289;46290;46291;46292;46293;46294;46295;46296;46297;46298;46299;46300;46301;46302;46303;46304;46305;46306;46307;46308;46309;46310;46311;46312;46313;46314;46315;46316;46317;46318;46319;46320;46321;46322;46323;46324;46325;46326;46327;46328;46329;46330;46331 46214 129 RISICSSDK IPEESGDEDEDDPDKRISICSSDKRIACEE EDDPDKRISICSSDKRIACEEEFSDSEEEG K R I D K R 0 1 0 1 1 0 0 0 0 2 0 1 0 0 0 3 0 0 0 0 0 0 9 1 1064.5284 Q6IT96;Q13547;B5BU61;B4DRG0;Q5HYD4 Q6IT96 404 412 HDAC1;DKFZp686H12203 Histone deacetylase;Histone deacetylase 1 yes no 2 1.8155E-05 126.29 1 0.70502 0.82381 NaN 1 Median 0.70502 0.82381 NaN 1 0 Median NaN NaN NaN 0 0 Median 49240000 27424000 21816000 49240000 27424000 21816000 0 0 0 11231 1715 11536 29670 46332;46333 46332 2 RISTITALGHEGK EFLKDEIKQEEETCKRISTITALGHEGKQL CKRISTITALGHEGKQLVNGEVSDERVAPN K R I G K Q 1 1 0 0 0 0 1 2 1 2 1 1 0 0 0 1 2 0 0 0 0 0 13 1 1381.7678 Q96T23;H0YER1;H0YCN2 Q96T23 427 439 RSF1 Remodeling and spacing factor 1 yes no 3 0.046954 11.099 1 0.96233 0.87848 NaN 1 Median NaN NaN NaN 0 0 Median 0.96233 0.87848 NaN 1 0 Median 1602800 715270 887560 0 0 0 1602800 715270 887560 11232 1991 11537 29671 46334 46334 1 RITADQALK AKNLINQMLTINPAKRITADQALKHPWVCQ TINPAKRITADQALKHPWVCQRSTVASMMH K R I L K H 2 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 1 1014.5822 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;H0Y6G2;Q8WU40;B3KY86;B3KTH7 Q5SWX3 260 268 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 0.020239 58.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4582400 4582400 0 4582400 4582400 0 0 0 0 11233 475 11538 29672 46335 46335 1 RITNEQEETYSLSQSSGK EQGDRENVLCNKKEKRITNEQEETYSLSQS NEQEETYSLSQSSGKFHQESKFDKGQNSLT K R I G K F 0 1 1 0 0 2 3 1 0 1 1 1 0 0 0 4 2 0 1 0 0 0 18 1 2055.9709 Q562F6;B7Z7S9 Q562F6 495 512 SGOL2 Shugoshin-like 2 yes no 3 1.7833E-05 51.611 1 2 2.1616 1.7959 2.1307 2 Median NaN NaN NaN 0 0 Median 2.1616 1.7959 2.1307 2 0 Median 14087000 7646500 6440300 4840700 4840700 0 9246000 2805700 6440300 11234 1795 11539 29673;29674;29675 46336;46337;46338;46339;46340;46341 46340 6 RIVEQDTMPPK EADRMLDMGFEPQIRRIVEQDTMPPKGVRH PQIRRIVEQDTMPPKGVRHTMMFSATFPKE R R I P K G 0 1 0 1 0 1 1 0 0 1 0 1 1 0 2 0 1 0 0 1 0 0 11 1 1312.6809 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010;B4E132 A0A0D9SFB3 363 373 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.0010351 77.662 2 2.3316 2.6265 10.613 2 Median 2.3316 2.6265 10.613 2 0 Median NaN NaN NaN 0 0 Median 39867000 11926000 27941000 39867000 11926000 27941000 0 0 0 11235 522 11540 29676;29677 46342;46343 46342 382 2 RKGDEVDGVDEVAK EALKKQLPGVKSEGKRKGDEVDGVDEVAKK KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK K R K A K K 1 1 0 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 3 0 0 14 2 1515.7529 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q96P95 A0A024R3T8 208 221 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 6.2123E-06 107.53 4 0.71994 0.9133 26.076 4 Linear 0.71994 0.9133 26.076 4 0 Linear NaN NaN NaN 0 0 Median 189840000 117530000 72310000 189840000 117530000 72310000 0 0 0 11236 139 11541 29678;29679;29680;29681 46344;46345;46346;46347;46348;46349 46347 6 RKPSTSDDSDSNFEK VSQKPDPAKTKNRRKRKPSTSDDSDSNFEK RKPSTSDDSDSNFEKIVSKAVTSKKSKGES K R K E K I 0 1 1 3 0 0 1 0 0 0 0 2 0 1 1 4 1 0 0 0 0 0 15 2 1711.7649 P11388 P11388 1466 1480 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.00015633 77.324 2 0.81895 1.0161 1.7774 2 Median 0.81895 1.0161 1.7774 2 0 Median NaN NaN NaN 0 0 Median 28476000 13581000 14896000 28476000 13581000 14896000 0 0 0 11237 1471 11542 29682;29683 46350;46351;46352 46352 3 RLAALEAR SDVSAKDKHAEDNEKRLAALEARQKAKEVQ HAEDNEKRLAALEARQKAKEVQKKLVHNAL K R L A R Q 3 2 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 1 898.53485 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50 A0A024R250 767 774 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.029232 60.436 1 0.85271 0.9648 NaN 1 Median 0.85271 0.9648 NaN 1 0 Median NaN NaN NaN 0 0 Median 30933000 15696000 15237000 30933000 15696000 15237000 0 0 0 11238 104 11543 29684 46353 46353 1 RLASSVLR ______________________________ ______________________________ K R L L R C 1 2 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 8 1 900.5505 J3QR09;J3KTE4;Q53G49;P84098;J3QL15 J3QR09 6 13 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 0.0056811 96.936 2 0.77476 0.8838 10.942 2 Median 0.77476 0.8838 10.942 2 0 Median NaN NaN NaN 0 0 Median 375340000 208330000 167010000 375340000 208330000 167010000 0 0 0 11239 1331 11544 29685;29686 46354;46355 46354 2 RLASTSDIEEK SKGTRLAYVAPTIPRRLASTSDIEEKENRD TIPRRLASTSDIEEKENRDSSSLRTSSSYT R R L E K E 1 1 0 1 0 0 2 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 11 1 1247.6357 F8VZN8;A0A024RBF1;B2RAH5;O14974;H0YIS4;H0YHI8 F8VZN8 504 514 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 2 0.0026425 66.435 2 1.2694 1.4201 10.642 2 Median 1.2694 1.4201 10.642 2 0 Median NaN NaN NaN 0 0 Median 11086000 5016400 6069400 11086000 5016400 6069400 0 0 0 11240 336 11545 29687;29688 46356;46357;46358 46357 3 RLDADLAR QLAMQTYEMVDKHIRRLDADLARFEADLKD MVDKHIRRLDADLARFEADLKDKMEGSDFE R R L A R F 2 2 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 1 928.50903 E9PEN0;B7Z6R2;A0A1B0GW41;Q8WYH8 E9PEN0 99 106 ING5 Inhibitor of growth protein 5 yes no 2 0.00017419 117.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13263000 13263000 0 13263000 13263000 0 0 0 0 11241 633 11546 29689 46359 46359 1 RLDELEEATK ASSRHLRFKLQSLSRRLDELEEATKNLQKA QSLSRRLDELEEATKNLQKAEDELLDLQDK R R L T K N 1 1 0 1 0 0 3 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1202.6143 A0A024RAC0;Q86V48;E5RFK8;Q05DE3;E5RHU7 A0A024RAC0 26 35 LUZP1 Leucine zipper protein 1 yes no 2 0.0012152 87.298 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9560800 0 9560800 9560800 0 9560800 0 0 0 11242 300 11547 29690;29691 46360;46361 46361 2 RLDIQEALK LLAFERKLDQTIMRKRLDIQEALKRPIKQK QTIMRKRLDIQEALKRPIKQKRKLRIFISN K R L L K R 1 1 0 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1084.6241 A0A024R137;A0A024R102;Q96GM5;B4DF50;F8VUB0;F8VZ70;F8VW95 A0A024R137 289 297 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.025314 55.064 1 0.54778 0.61672 NaN 1 Median 0.54778 0.61672 NaN 1 0 Median NaN NaN NaN 0 0 Median 13709000 8479600 5229600 13709000 8479600 5229600 0 0 0 11243 65 11548 29692 46362;46363 46362 2 RLDQCPESPLQR PHVEPRPLPSFCPPRRLDQCPESPLQRCPP PPRRLDQCPESPLQRCPPPAPRPRLRPEPC R R L Q R C 0 2 0 1 1 2 1 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 12 1 1497.7358 Q5T749 Q5T749 387 398 KPRP Keratinocyte proline-rich protein yes yes 2 0.04573 42.395 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2427900 2427900 0 2427900 2427900 0 0 0 0 11244 1824 11549 29693 46364 46364 1 RLDQELDFILSQQK TSLHREVEKVKLDQKRLDQELDFILSQQKE KRLDQELDFILSQQKELEDLLSPLEELVKE K R L Q K E 0 1 0 2 0 3 1 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 14 1 1731.9155 M0QXN5;A0A024QZF1;P37198 M0QXN5 312 325 NUP62;hCG_19665 Nuclear pore glycoprotein p62 yes no 3 0.02858 30.072 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6956900 0 6956900 6956900 0 6956900 0 0 0 11245 19 11550 29694;29695 46365;46366 46366 2 RLEAEAGPAGELAGAR GGALEPHAGLRPLSRRLEAEAGPAGELAGA LEAEAGPAGELAGARGFFQARHLEMDAFKR R R L A R G 5 2 0 0 0 0 3 3 0 0 2 0 0 0 1 0 0 0 0 0 0 0 16 1 1566.8114 J3KPS2;Q6ZRV2 J3KPS2 106 121 FAM83H Protein FAM83H yes no 3 0.0019374 52.862 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6553100 0 6553100 6553100 0 6553100 0 0 0 11246 1327 11551 29696;29697 46367;46368 46368 2 RLEAVLASR EREPGAAGVRRALGRRLEAVLASRSEANAV RRALGRRLEAVLASRSEANAVFDILAVLQS R R L S R S 2 2 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 1 1013.5982 Q9BVI4 Q9BVI4 17 25 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.0051988 72.643 1 0.86705 0.94215 NaN 1 Median 0.86705 0.94215 NaN 1 0 Median NaN NaN NaN 0 0 Median 39171000 19520000 19651000 39171000 19520000 19651000 0 0 0 11247 2007 11552 29698 46369;46370 46369 2 RLEFENQK FEEEKVKRQNEIAKKRLEFENQKTRLGIQL QNEIAKKRLEFENQKTRLGIQLDFEKNQLK K R L Q K T 0 1 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 1 1062.5458 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8 Q14683 807 814 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0083729 91.853 1 0.81729 0.92069 NaN 1 Median 0.81729 0.92069 NaN 1 0 Median NaN NaN NaN 0 0 Median 22378000 12267000 10110000 22378000 12267000 10110000 0 0 0 11248 1739 11553 29699 46371 46371 1 RLEQLGAQR KTYEHFNAMGKYVDKRLEQLGAQRIFELGL GKYVDKRLEQLGAQRIFELGLGDDDGNLEE K R L Q R I 1 2 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1069.5992 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8 B2R6E5 194 202 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.031097 51.949 1 0.80435 0.89346 NaN 1 Median 0.80435 0.89346 NaN 1 0 Median NaN NaN NaN 0 0 Median 24032000 11856000 12176000 24032000 11856000 12176000 0 0 0 11249 719 11554 29700 46372 46372 1 RLFMSR LARRTNSTFNQVVLKRLFMSRTNRPPLSLS STFNQVVLKRLFMSRTNRPPLSLSRMIRKM K R L S R T 0 2 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 6 1 808.43778 G3V203;A0A024QZD1;J3QQ67;Q07020;Q0QEW2;H0YHA7;F8VYV2;B4DDY5;A0A075B7A0 G3V203 50 55 RPL18 60S ribosomal protein L18 yes no 2 0.028598 41.892 1 1.3668 1.6408 NaN 1 Median 1.3668 1.6408 NaN 1 0 Median NaN NaN NaN 0 0 Median 307250000 138620000 168630000 307250000 138620000 168630000 0 0 0 11250 16 11555 29701 46373 46373 7 0 RLGASLAFNNIYR FKRLYSLALHPNAFKRLGASLAFNNIYREF FKRLGASLAFNNIYREFREEESLVEQFVFE K R L Y R E 2 2 2 0 0 0 0 1 0 1 2 0 0 1 0 1 0 0 1 0 0 0 13 1 1493.8103 P78527;B4DL41 P78527 1075 1087 PRKDC DNA-dependent protein kinase catalytic subunit yes no 3 0.014593 27.467 2 0.34219 0.308 0.40231 2 Median NaN NaN NaN 0 0 Median 0.34219 0.308 0.40231 2 0 Median 4251100 2822500 1428600 0 0 0 4251100 2822500 1428600 11251 1665 11556 29702;29703 46374;46375 46374 2 RLGSLVDEFK QAVDLTLPKVEAMNKRLGSLVDEFKELVYP EAMNKRLGSLVDEFKELVYPPDYNPEGKVT K R L F K E 0 1 0 1 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 1 1162.6346 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 517 526 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 0.0050082 66.568 1 1 0.32012 0.31975 43.08 2 Median 0.36944 0.43361 NaN 1 0 Median 0.27739 0.23578 NaN 1 0 Median 62473000 47512000 14961000 33038000 24741000 8296400 29435000 22770000 6664500 11252 82 11557 29704;29705 46376;46377 46376 1 RLGTVLPVIEK ICGLFVESEGVDFEKRLGTVLPVIEKEIDP DFEKRLGTVLPVIEKEIDPENFKDIMEETE K R L E K E 0 1 0 0 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 11 1 1223.7602 O75691;B4DN27 O75691 2402 2412 UTP20 Small subunit processome component 20 homolog yes no 2 0.0023601 67.726 2 1 1.4786 1.4817 12.463 3 Median 1.3723 1.598 10.691 2 0 Median 1.6055 1.346 NaN 1 0 Median 77972000 31661000 46311000 71762000 29419000 42343000 6210300 2242000 3968300 11253 1412 11558 29706;29707;29708 46378;46379;46380 46379 3 RLIAEAK KETPDKVELSKEEVKRLIAEAKEKLQEEGG ELSKEEVKRLIAEAKEKLQEEGGGSDEEET K R L A K E 2 1 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 1 799.49159 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;Q86X79;Q05BL3;Q6PKI5;Q6PIN4 Q9BV37 34 40 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.035076 93.561 1 0.94102 1.0999 NaN 1 Median 0.94102 1.0999 NaN 1 0 Median NaN NaN NaN 0 0 Median 49834000 25012000 24822000 49834000 25012000 24822000 0 0 0 11254 339 11559 29709 46381 46381 1 RLIDLHSPSEIVK EGSKTWDRFQMRIHKRLIDLHSPSEIVKQI HKRLIDLHSPSEIVKQITSISIEPGVEVEV K R L V K Q 0 1 0 1 0 0 1 0 1 2 2 1 0 0 1 2 0 0 0 1 0 0 13 1 1505.8566 P60866;G3XAN0 P60866 87 99 RPS20 40S ribosomal protein S20 yes no 3 3.7205E-05 88.552 1 2 1.2672 1.1068 9.4727 3 Median 1.1542 1.2987 NaN 1 0 Median 1.2808 1.1023 0.56643 2 0 Median 56060000 26448000 29612000 13460000 6950000 6509500 42601000 19498000 23103000 11255 1625 11560 29710;29711;29712 46382;46383;46384;46385 46384 4 RLIPDGCGVK TKFNADEFEDMVAEKRLIPDGCGVKYI___ MVAEKRLIPDGCGVKYI_____________ K R L V K Y 0 1 0 1 1 0 0 2 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1113.5965 F8W7C6;A0A087WV22;X5D7P1;X1WI28;X5D2T3;P27635 X1WI28 189 198 RPL10 60S ribosomal protein L10 no no 2 1.587E-11 160.75 2 2 0.99234 1.1379 9.9188 4 Linear 0.89804 1.077 8.1379 2 0 Median 1.077 0.94406 7.4438 2 0 Median 789090000 395830000 393260000 600110000 304660000 295450000 188980000 91166000 97810000 11256 1524;1266 11561 29713;29714;29715;29716 46386;46387;46388;46389;46390;46391;46392;46393 46386 8 RLITGASDSELR HRTEVWGLVLLSEEKRLITGASDSELRVWD EEKRLITGASDSELRVWDIAYLQEIEDPEE K R L L R V 1 2 0 1 0 0 1 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 12 1 1316.7048 Q5TDG3;Q9UNX4 Q5TDG3 205 216 WDR3 WD repeat-containing protein 3 yes no 2;3 4.2445E-06 95.183 2 3 1.0794 1.0622 3.2424 4 Median 0.9728 1.0571 5.1439 2 0 Median 1.1707 1.0622 2.2015 2 0 Median 93452000 42179000 51273000 79439000 37144000 42295000 14014000 5035000 8978700 11257 1827 11562 29717;29718;29719;29720;29721 46394;46395;46396;46397;46398;46399;46400 46397 7 RLIVVLEGASLETVK PKRPRLGAGNKIGGRRLIVVLEGASLETVK RLIVVLEGASLETVKVGKTYELLNCDKHKS R R L V K V 1 1 0 0 0 0 2 1 0 1 3 1 0 0 0 1 1 0 0 3 0 0 15 1 1625.9716 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65 A8K6D2 42 56 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 3 0.04045 16.529 1 1.1642 1.0448 NaN 1 Median NaN NaN NaN 0 0 Median 1.1642 1.0448 NaN 1 0 Median 2019500 838170 1181400 0 0 0 2019500 838170 1181400 11258 759 11563 29722 46401 46401 1 RLLINLYK LDANFTVVVMMPEAKRLLINLYKLVKSQIS VMMPEAKRLLINLYKLVKSQISVYSELNKI K R L Y K L 0 1 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 1 0 0 0 8 1 1031.6492 Q9H8H0;J3QKV1 Q9H8H0 669 676 NOL11 Nucleolar protein 11 yes no 2 0.013943 79.116 1 0.91884 1.0605 NaN 1 Median 0.91884 1.0605 NaN 1 0 Median NaN NaN NaN 0 0 Median 30093000 16590000 13503000 30093000 16590000 13503000 0 0 0 11259 2042 11564 29723 46402 46402 1 RLLPSLIGR LLSSFDFFLTDARIRRLLPSLIGRHFYQRK TDARIRRLLPSLIGRHFYQRKKVPVSVNLL R R L G R H 0 2 0 0 0 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 9 1 1023.6553 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9;I3L3C4 O76021 163 171 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.025467 54.982 1 1 0.66672 0.67652 3.6331 2 Median 0.63657 0.69412 NaN 1 0 Median 0.6983 0.65936 NaN 1 0 Median 201190000 123290000 77903000 124850000 74897000 49956000 76342000 48394000 27948000 11260 1415 11565 29724;29725 46403;46404 46403 2 RLMDGEEPLPMLPSYK KIPNFDVREIVNNIRRLMDGEEPLPMLPSY LMDGEEPLPMLPSYKNFKGTIEELAPNQYV R R L Y K N 0 1 0 1 0 0 2 1 0 0 3 1 2 0 3 1 0 0 1 0 0 0 16 1 1874.927 P11388 P11388 878 893 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.00019441 46.873 1 1.3149 1.4886 NaN 1 Median 1.3149 1.4886 NaN 1 0 Median NaN NaN NaN 0 0 Median 23485000 10514000 12970000 23485000 10514000 12970000 0 0 0 11261 1471 11566 29726 46405 46405 1202;1203 1 RLNQEVALNLK NSSLTISEGPIVSERRLNQEVALNLKEDHE VSERRLNQEVALNLKEDHEVEVGVLKESVD R R L L K E 1 1 2 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 11 1 1296.7514 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1477 1487 AHCTF1 Protein ELYS yes no 2 0.0003231 93.111 1 2.7918 2.378 NaN 1 Median NaN NaN NaN 0 0 Median 2.7918 2.378 NaN 1 0 Median 9401700 3024500 6377200 0 0 0 9401700 3024500 6377200 11262 1945 11567 29727 46406 46406 1 RLNVWDLSK SPHNETILASSGTDRRLNVWDLSKIGEEQS SSGTDRRLNVWDLSKIGEEQSAEDAEDGPP R R L S K I 0 1 1 1 0 0 0 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 9 1 1129.6244 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5;B4DRT0;Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP02 Q6FHQ0 340 348 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.00028445 107.57 2 2 1.6133 1.3811 27.177 3 Median 0.74218 0.86887 NaN 1 0 Median 1.6202 1.391 1.0028 2 0 Median 93364000 47851000 45513000 53245000 32488000 20757000 40119000 15363000 24756000 11263 1771;1695 11568 29728;29729;29730;29731 46407;46408;46409;46410;46411;46412;46413;46414 46409 8 RLPILVQLVDTLGAEK ISVFVDALPHVPEHRRLPILVQLVDTLGAE LPILVQLVDTLGAEKFLWILLILLFEQYVT R R L E K F 1 1 0 1 0 1 1 1 0 1 4 1 0 0 1 0 1 0 0 2 0 0 16 1 1764.0509 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1395 1410 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 1.8236E-25 145.55 2 0.89239 1.0611 0.88843 2 Median 0.89239 1.0611 0.88843 2 0 Median NaN NaN NaN 0 0 Median 154460000 82004000 72456000 154460000 82004000 72456000 0 0 0 11264 897 11569 29732;29733 46415;46416;46417 46416 3 RLPPFETFSQGPTLQFTLR ISKKRATWETILDGKRLPPFETFSQGPTLQ FETFSQGPTLQFTLRWTGETNDKSTAPIAK K R L L R W 0 2 0 0 0 2 1 1 0 0 3 0 0 3 3 1 3 0 0 0 0 0 19 1 2234.1848 J3QQW9;Q15022;A8K1U9 J3QQW9 319 337 SUZ12 Polycomb protein SUZ12 yes no 3 1.5156E-08 88.176 2 2 1.335 1.3367 39.426 4 Median 0.80636 0.88677 32.279 2 0 Median 1.8435 1.6184 1.2907 2 0 Median 54540000 25751000 28790000 29972000 17838000 12134000 24568000 7912600 16656000 11265 1336 11570 29734;29735;29736;29737 46418;46419;46420;46421;46422;46423;46424 46419 7 RLPPQQIEK ______________________________ ______________________________ R R L E K N 0 1 0 0 0 2 1 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 9 1 1107.64 B1AK87;B1AK85;B2R7T8;B1AK88;B4DWA6;P47756 B1AK87 3 11 CAPZB F-actin-capping protein subunit beta yes no 2 0.042945 60.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11266 814 11571 29738 46425 46425 1 RLPVATIFTTHATLLGR HEWLAGVGLCLCRARRLPVATIFTTHATLL PVATIFTTHATLLGRYLCAGAVDFYNNLEN R R L G R Y 2 2 0 0 0 0 0 1 1 1 3 0 0 1 1 0 4 0 0 1 0 0 17 1 1866.084 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z8P0 P13807 195 211 GYS1 Glycogen [starch] synthase, muscle yes no 3 4.99E-05 69.935 1 2 0.46567 0.40612 12.367 2 Median NaN NaN NaN 0 0 Median 0.46567 0.40612 12.367 2 0 Median 82128000 58382000 23746000 9030300 9030300 0 73098000 49352000 23746000 11267 1479 11572 29739;29740;29741 46426;46427;46428;46429 46426 4 RLQDVSGQLNSTK TKEELALEKKRELEKRLQDVSGQLNSTKKP EKRLQDVSGQLNSTKKPPKKANEKTESSSA K R L T K K 0 1 1 1 0 2 0 1 0 0 2 1 0 0 0 2 1 0 0 1 0 0 13 1 1444.7634 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A0G2JHN8;A0A140T9I1 A0A024RCR5 739 751 BRD2 Bromodomain-containing protein 2 yes no 2 0.0045412 73.848 2 1 1.1654 0.98486 NaN 1 Median NaN NaN NaN 0 0 Median 1.1654 0.98486 NaN 1 0 Median 5467400 1646500 3820900 1776200 0 1776200 3691200 1646500 2044600 11268 367 11573 29742;29743;29744 46430;46431;46432 46431 3 RLQDVSGQLSSSK SKEELAQEKKKELEKRLQDVSGQLSSSKKP EKRLQDVSGQLSSSKKPARKEKPGSAPSGG K R L S K K 0 1 0 1 0 2 0 1 0 0 2 1 0 0 0 4 0 0 0 1 0 0 13 1 1403.7369 A0A024R8H6;Q15059;B4DS09 A0A024R8H6 671 683 BRD3 Bromodomain-containing protein 3 yes no 2 0.013596 44.299 1 0.69696 0.77469 NaN 1 Median 0.69696 0.77469 NaN 1 0 Median NaN NaN NaN 0 0 Median 7697500 4714700 2982800 7697500 4714700 2982800 0 0 0 11269 249 11574 29745 46433 46433 1 RLQEIAQK MRRRAMSHNVKRLPRRLQEIAQKEAEKAVH NVKRLPRRLQEIAQKEAEKAVHQKKEHSKN R R L Q K E 1 1 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 1 984.57163 Q96F88;Q99575;E5RK39 Q96F88 154 161 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.0045895 98.997 2 0.25126 0.29189 NaN 1 Median 0.25126 0.29189 NaN 1 0 Median NaN NaN NaN 0 0 Median 71340000 62786000 8553300 71340000 62786000 8553300 0 0 0 11270 1965 11575 29746;29747 46434;46435 46435 2 RLQELEGQIADLK KKDANQAKLSERRRKRLQELEGQIADLKKK RKRLQELEGQIADLKKKLNEQSKLLKLKES K R L L K K 1 1 0 1 0 2 2 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 13 1 1511.8308 Q59HG1;O95239;Q6PKB2 Q59HG1 604 616 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.0034982 65.179 1 1 1.4413 1.214 NaN 1 Median NaN NaN NaN 0 0 Median 1.4413 1.214 NaN 1 0 Median 16567000 11994000 4573100 8517000 8517000 0 8049800 3476700 4573100 11271 1803 11576 29748;29749 46436;46437 46436 2 RLQGLSASDVTEQIIK PQRMNEQPRQLFWEKRLQGLSASDVTEQII LQGLSASDVTEQIIKTMELPKGLQGVGPGS K R L I K T 1 1 0 1 0 2 1 1 0 2 2 1 0 0 0 2 1 0 0 1 0 0 16 1 1756.9683 Q9UBB5;O60535 Q9UBB5 286 301 MBD2;NY-CO-41 Methyl-CpG-binding domain protein 2 yes no 3 3.8169E-05 75.143 2 1.6604 1.408 7.9688 2 Median NaN NaN NaN 0 0 Median 1.6604 1.408 7.9688 2 0 Median 17377000 6418600 10958000 0 0 0 17377000 6418600 10958000 11272 2096 11577 29750;29751 46438;46439;46440 46438 3 RLQLPVWEYK TNLPHTPRYYDILKKRLQLPVWEYKDRFTD DILKKRLQLPVWEYKDRFTDILVRHQSFVL K R L Y K D 0 1 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 1 1 1 0 0 10 1 1330.7398 O43143;B4E0S6 O43143 134 143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.0011509 75.378 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7494200 7494200 0 7494200 7494200 0 0 0 0 11273 1379 11578 29752;29753 46441;46442 46442 2 RLQTQVFK LDYILGLKIEDFLERRLQTQVFKLGLAKSI IEDFLERRLQTQVFKLGLAKSIHHARVLIR R R L F K L 0 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 8 1 1018.5924 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 109 116 RPS9 40S ribosomal protein S9 yes no 2 4.5201E-05 138.78 3 2 0.84691 0.8815 27.638 4 Median 0.92191 1.107 0.023979 2 0 Median 0.78076 0.68658 3.1563 2 0 Median 966690000 522310000 444380000 729010000 389470000 339540000 237680000 132840000 104840000 11274 157 11579 29754;29755;29756;29757;29758 46443;46444;46445;46446;46447;46448;46449;46450 46443 8 RLSFAVPFR SDEMMKSYVAWDREKRLSFAVPFREMKPVI AWDREKRLSFAVPFREMKPVIFLDVFLPRV K R L F R E 1 2 0 0 0 0 0 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 9 1 1091.624 P78527;B4DL41 P78527 891 899 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2;3 0.011513 54.416 2 2 0.30741 0.26941 26.061 2 Median NaN NaN NaN 0 0 Median 0.30741 0.26941 26.061 2 0 Median 13785000 10019000 3766300 0 0 0 13785000 10019000 3766300 11275 1665 11580 29759;29760;29761;29762 46451;46452;46453;46454 46452 4 RLSLSTSK DLEEAEGRLAAPLLKRLSLSTSKLNSLAIG LAAPLLKRLSLSTSKLNSLAIGLRQIAASS K R L S K L 0 1 0 0 0 0 0 0 0 0 2 1 0 0 0 3 1 0 0 0 0 0 8 1 890.51853 P54886 P54886 425 432 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0043537 99.442 1 2.5067 2.9419 NaN 1 Median 2.5067 2.9419 NaN 1 0 Median NaN NaN NaN 0 0 Median 33015000 10208000 22808000 33015000 10208000 22808000 0 0 0 11276 1611 11581 29763 46455 46455 1 RLSPPECLNASLLGGVLR SSTSKYKVTVAEVQRRLSPPECLNASLLGG PPECLNASLLGGVLRRAKSKNGGRSLREKL R R L L R R 1 2 1 0 1 0 1 2 0 0 5 0 0 0 2 2 0 0 0 1 0 0 18 1 1951.0673 Q96SH1;P05549;A8K557;Q6VUC0;Q92481;C9JXZ2;H7C5E5;C1K3N0;B2R9E2;B2RAN6;Q92754;H7C4N4 Q96SH1 239 256 TFAP2A;TFAP2E;TFAP2B;TFAP2C Transcription factor AP-2-alpha;Transcription factor AP-2-epsilon;Transcription factor AP-2-beta;Transcription factor AP-2 gamma yes no 3 0.059038 8.4277 1 0.69847 0.6391 NaN 1 Median NaN NaN NaN 0 0 Median 0.69847 0.6391 NaN 1 0 Median 1716000 973640 742390 0 0 0 1716000 973640 742390 11277 1448 11582 29764 46456 46456 1 RLSVER NMQVNKIKKNEDAKKRLSVERIYQKKTQLE IKKNEDAKKRLSVERIYQKKTQLEHILLRP K R L E R I 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 6 1 758.43989 P11388;J3KTB7 P11388 27 32 TOP2A DNA topoisomerase 2-alpha yes no 2 4.155E-05 155.53 1 0.67777 0.73968 NaN 1 Median 0.67777 0.73968 NaN 1 0 Median NaN NaN NaN 0 0 Median 165780000 97795000 67987000 165780000 97795000 67987000 0 0 0 11278 1471 11583 29765 46457 46457 1 RLSYNTASNK ______________________________ LTYRRRLSYNTASNKTRLSRTPGNRIVYLY R R L N K T 1 1 2 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 10 1 1152.5887 A0A024RDH8;P49207 A0A024RDH8 10 19 RPL34 60S ribosomal protein L34 yes no 2 2.9605E-09 138.25 1 1 0.88655 0.90684 10.929 2 Median 0.8116 0.9797 NaN 1 0 Median 0.96843 0.8394 NaN 1 0 Median 166590000 88497000 78092000 150290000 80362000 69930000 16297000 8135300 8161800 11279 386 11584 29766;29767 46458;46459 46458 2 RLTLDHEK VRKEKPKEDAYEYKKRLTLDHEKSKLSLAE DAYEYKKRLTLDHEKSKLSLAEIYEQEYIK K R L E K S 0 1 0 1 0 0 1 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 8 1 1010.5509 B3KPV5;O00566 B3KPV5 457 464 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3 0.023278 29.743 1 1.0593 1.1596 NaN 1 Median 1.0593 1.1596 NaN 1 0 Median NaN NaN NaN 0 0 Median 16954000 5450300 11504000 16954000 5450300 11504000 0 0 0 11280 924 11585 29768 46460 46460 1 RLTLQQK VVIGDAKSNSLISIKRLTLQQKAKVKLDFV SNSLISIKRLTLQQKAKVKLDFVAPATGAH K R L Q K A 0 1 0 0 0 2 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 7 1 885.5396 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172;Q86VH2 O75643 2081 2087 SNRNP200;KIF27 U5 small nuclear ribonucleoprotein 200 kDa helicase;Kinesin-like protein KIF27 yes no 2 0.023978 100.37 1 0.98252 1.1233 NaN 1 Median 0.98252 1.1233 NaN 1 0 Median NaN NaN NaN 0 0 Median 21714000 12076000 9637500 21714000 12076000 9637500 0 0 0 11281 1411 11586 29769 46461 46461 1 RLTVEFMHYIIAAR PRTGKCHVQTIQLCRRLTVEFMHYIIAARA RRLTVEFMHYIIAARALRKVFLSIKGIYYQ R R L A R A 2 2 0 0 0 0 1 0 1 2 1 0 1 1 0 0 1 0 1 1 0 0 14 1 1718.929 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7BYY8 B5MCF9 163 176 PES1 Pescadillo homolog yes no 3 0.04311 11.768 1 1.5956 1.4605 NaN 1 Median NaN NaN NaN 0 0 Median 1.5956 1.4605 NaN 1 0 Median 1639600 541620 1098000 0 0 0 1639600 541620 1098000 11282 886 11587 29770 46462 46462 1 RLTVNEAVK AQAASGFLLDPVRNRRLTVNEAVKEGVVGP DPVRNRRLTVNEAVKEGVVGPELHHKLLSA R R L V K E 1 1 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 1 1028.5978 Q15149;D3DWL0 Q15149 2884 2892 PLEC;PLEC1 Plectin yes no 2 0.038738 48.785 1 2.5165 2.9178 NaN 1 Median 2.5165 2.9178 NaN 1 0 Median NaN NaN NaN 0 0 Median 35579000 11355000 24223000 35579000 11355000 24223000 0 0 0 11283 1754 11588 29771 46463 46463 1 RLVEVDSSR VFEEEVRETRRRHERRLVEVDSSRQQEYDF RRRHERRLVEVDSSRQQEYDFKMAQALEEL R R L S R Q 0 2 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 9 1 1059.5673 Q03252;A0A0A7M1X5 Q03252 240 248 LMNB2 Lamin-B2 yes no 2 0.021491 66.962 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11284 1682 11589 29772 46464 46464 1 RLVIQDK FRRRREGKTDYYARKRLVIQDKNKYNTPKY KTDYYARKRLVIQDKNKYNTPKYRMIVRVT K R L D K N 0 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 1 870.5287 A2RUM7;P46777;Q59GX9;Q9BUV4;R4GNJ2 A2RUM7 35 41 RPL5 60S ribosomal protein L5 yes no 2 7.2085E-11 166.78 2 2 0.93653 0.96921 24.828 4 Median 0.97769 1.1814 2.7724 2 0 Median 0.88508 0.77327 6.7114 2 0 Median 2145500000 1059800000 1085700000 1999000000 983760000 1015300000 146450000 76040000 70410000 11285 653 11590 29773;29774;29775;29776 46465;46466;46467;46468;46469;46470;46471 46467 7 RLVQSPNSYFMDVK LHPSLEEEKKKHKKKRLVQSPNSYFMDVKC KRLVQSPNSYFMDVKCPGCYKITTVFSHAQ K R L V K C 0 1 1 1 0 1 0 0 0 0 1 1 1 1 1 2 0 0 1 2 0 0 14 1 1682.845 H0YMV8;Q71UM5;C9JLI6;A4D1G5;P42677;Q5T4L4 P42677 39 52 RPS27L;LOC392748;RPS27 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2;3 0.00047787 53.995 3 0.9819 0.83822 34.115 3 Median NaN NaN NaN 0 0 Median 0.9819 0.83822 34.115 3 0 Median 26378000 11892000 14485000 0 0 0 26378000 11892000 14485000 11286 1298;1564 11591;11592 29777;29778;29779 46472;46473;46474;46475 46474 988 4 RLVTTGVLK KVGENADSQIKLSIKRLVTTGVLKQTKGVG IKLSIKRLVTTGVLKQTKGVGASGSFRLAK K R L L K Q 0 1 0 0 0 0 0 1 0 0 2 1 0 0 0 0 2 0 0 2 0 0 9 1 985.62842 P07305 P07305 74 82 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.001711 91.085 2 1 1.3195 1.5673 71.924 3 Plateau 1.2584 1.5098 5.2882 2 0 Median 0.49266 0.43513 NaN 1 0 Median 662800000 285950000 376860000 620890000 259220000 361670000 41913000 26726000 15187000 11287 1451 11593 29780;29781;29782 46476;46477;46478 46477 3 RLYSLALHPNAFK QQQEKSPVNTKSLFKRLYSLALHPNAFKRL FKRLYSLALHPNAFKRLGASLAFNNIYREF K R L F K R 2 1 1 0 0 0 0 0 1 0 3 1 0 1 1 1 0 0 1 0 0 0 13 1 1528.8514 P78527;B4DL41 P78527 1062 1074 PRKDC DNA-dependent protein kinase catalytic subunit yes no 3 0.035041 20.124 1 0.30052 0.27457 NaN 1 Median NaN NaN NaN 0 0 Median 0.30052 0.27457 NaN 1 0 Median 1561800 1074800 487030 0 0 0 1561800 1074800 487030 11288 1665 11594 29783 46479;46480 46479 2 RMATEVAADALGEEWK IEVDDERKLRTFYEKRMATEVAADALGEEW MATEVAADALGEEWKGYVVRISGGNDKQGF K R M W K G 4 1 0 1 0 0 3 1 0 0 1 1 1 0 0 0 1 1 0 1 0 0 16 1 1775.8512 Q96DV6;A2A3R6;P62753;A2A3R7 Q96DV6 31 46 RPS6 40S ribosomal protein S6 yes no 2;3 3.6267E-09 106.32 5 8 1.0012 1.1407 25.746 11 Median 0.94344 1.1407 4.8353 3 0 Median 1.2334 1.0574 30.65 8 0 Median 676580000 341780000 334800000 428620000 227470000 201150000 247960000 114300000 133660000 11289 649 11595;11596 29784;29785;29786;29787;29788;29789;29790;29791;29792;29793;29794;29795;29796 46481;46482;46483;46484;46485;46486;46487;46488;46489;46490;46491;46492;46493;46494;46495;46496;46497;46498;46499;46500;46501;46502 46486 504 21 RMGESDDSILR FNGQFKTYAICGAIRRMGESDDSILRLAKA GAIRRMGESDDSILRLAKADGIVSK_____ R R M L R L 0 2 0 2 0 0 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 0 11 1 1277.6034 Q8WVC2;Q6FGH5;P63220 Q8WVC2 61 71 RPS21 40S ribosomal protein S21 yes no 2 0.031218 47.302 1 1.5703 1.7071 NaN 1 Median 1.5703 1.7071 NaN 1 0 Median NaN NaN NaN 0 0 Median 45630000 18676000 26953000 45630000 18676000 26953000 0 0 0 11290 1655 11597 29797 46503 46503 1433 1 RMVVPAALK LKVFDGIPPPYDKKKRMVVPAALKVVRLKP PYDKKKRMVVPAALKVVRLKPTRKFAYLGR K R M L K V 2 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 9 1 983.59501 Q53H34;P40429;Q9BSQ6;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q6NVV1 Q53H34 117 125 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 0.011111 63.48 3 1.256 1.4712 4.19 2 Median 1.256 1.4712 4.19 2 0 Median NaN NaN NaN 0 0 Median 109100000 44166000 64935000 109100000 44166000 64935000 0 0 0 11291 1558 11598 29798;29799;29800 46504;46505;46506;46507;46508 46504 1309 5 RNAAPPPSNTEAPPGETR AFAIPMIHAVLQWQKRNAAPPPSNTEAPPG APPPSNTEAPPGETRTEAGAETRSPGKAEA K R N T R T 3 2 2 0 0 0 2 1 0 0 0 0 0 0 5 1 2 0 0 0 0 0 18 1 1860.9078 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;Q59FS7;B4DM03 B4DKV2 168 185 DDX24 ATP-dependent RNA helicase DDX24 yes no 2;3 1.0456E-17 107.63 2 2 0.55729 0.61438 NaN 1 Median 0.55729 0.61438 NaN 1 0 Median NaN NaN NaN 0 0 Median 24948000 20409000 4539000 22604000 18065000 4539000 2344500 2344500 0 11292 993 11599 29801;29802;29803;29804 46509;46510;46511;46512 46510 4 RNCSVTGIDDLEQIPADTTDINHLETQPVSSK RRCSLGIFLPRLPNKRNCSVTGIDDLEQIP TTDINHLETQPVSSKDSGIGSVAGKLNLSP K R N S K D 1 1 2 4 1 2 2 1 1 3 2 1 0 0 2 3 4 0 0 2 0 0 32 1 3552.7002 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1687 1718 CASC5 Protein CASC5 yes no 4 0.05616 4.532 1 1.1393 0.95671 NaN 1 Median NaN NaN NaN 0 0 Median 1.1393 0.95671 NaN 1 0 Median 6786300 3603000 3183300 0 0 0 6786300 3603000 3183300 11293 1928 11600 29805 46513 46513 1 RNDFQLIGIQDGYLSLLQDSGEVR DICPSTHNMDVPNIKRNDFQLIGIQDGYLS QDGYLSLLQDSGEVREDLRLPEGDLGKEIE K R N V R E 0 2 1 3 0 3 1 3 0 2 4 0 0 1 0 2 0 0 1 1 0 0 24 1 2735.3879 I3L397;I3L504;P63241 I3L397 86 109 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 yes no 3 1.0598E-06 53.865 2 2 1.3954 1.3035 NaN 1 Median NaN NaN NaN 0 0 Median 1.3954 1.3035 NaN 1 0 Median 73866000 27626000 46240000 17140000 9575600 7564300 56726000 18050000 38676000 11294 1322 11601 29806;29807;29808;29809 46514;46515;46516;46517 46516 3 RNEEEESTSQIERPLSQEPAK PVYVPVPKQTIKKTKRNEEEESTSQIERPL STSQIERPLSQEPAKKVKAKKKHTNAEKKL K R N A K K 1 2 1 0 0 2 6 0 0 1 1 1 0 0 2 3 1 0 0 0 0 0 21 2 2456.1779 P42696;A2A2V2;Q5TCT4 P42696 84 104 RBM34 RNA-binding protein 34 yes no 3 0.0056577 25.207 1 1.0331 1.1708 NaN 1 Median 1.0331 1.1708 NaN 1 0 Median NaN NaN NaN 0 0 Median 44976000 20691000 24284000 44976000 20691000 24284000 0 0 0 11295 1566 11602 29810 46518 46518 1 RNEIDAEPPAK RKRRGGFAVQAKKPKRNEIDAEPPAKRHAT KKPKRNEIDAEPPAKRHATAEEVEEEERDR K R N A K R 2 1 1 1 0 0 2 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 11 1 1238.6255 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 21 31 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2;3 1.1334E-08 99.343 4 4 1.114 1.1439 6.1629 8 Median 0.96877 1.1439 2.6022 4 0 Median 1.3651 1.1754 9.0112 4 0 Median 1404400000 698760000 705630000 1238400000 630300000 608130000 165960000 68454000 97502000 11296 1934 11603 29811;29812;29813;29814;29815;29816;29817;29818 46519;46520;46521;46522;46523;46524;46525;46526;46527;46528;46529;46530;46531 46522 13 RNENQLIIFADDTYPR IVSDVQESFIWVRYKRNENQLIIFADDTYP NENQLIIFADDTYPRWVTTASLLDYDTVAG K R N P R W 1 2 2 2 0 1 1 0 0 2 1 0 0 1 1 0 1 0 1 0 0 0 16 1 1963.9752 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 1016 1031 SF3B3 Splicing factor 3B subunit 3 yes no 3 0.050228 12.934 1 0.86562 0.77454 NaN 1 Median NaN NaN NaN 0 0 Median 0.86562 0.77454 NaN 1 0 Median 2214500 1211200 1003300 0 0 0 2214500 1211200 1003300 11297 764 11604 29819 46532 46532 1 RNFILDQTNVSAAAQR PQCLGKFIEIAARKKRNFILDQTNVSAAAQ NFILDQTNVSAAAQRRKMCLFAGFQRKAVV K R N Q R R 3 2 2 1 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 16 1 1802.9387 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 534 549 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 3 5.3605E-06 85.988 1 2 1.2627 0.6244 49.235 3 Plateau 1.2718 1.3852 NaN 1 0 Median 0.67854 0.59315 7.2608 2 0 Median 122870000 60314000 62555000 85383000 37743000 47640000 37487000 22571000 14915000 11298 999 11605 29820;29821;29822 46533;46534;46535;46536;46537;46538 46534 6 RNIPPYFVALVPQEEELDDQK CLEKEVAALCRYTPRRNIPPYFVALVPQEE FVALVPQEEELDDQKIQVTPPGFQLVFLPF R R N Q K I 1 1 1 2 0 2 3 0 0 1 2 1 0 1 3 0 0 0 1 2 0 0 21 1 2499.2646 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 404 424 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 3 0.00019641 35.538 1 2 0.3153 0.27185 31.745 3 Median 0.41891 0.4673 NaN 1 0 Median 0.31403 0.2697 1.1276 2 0 Median 59811000 42344000 17467000 20351000 12970000 7381100 39460000 29374000 10086000 11299 82 11606 29823;29824;29825 46539;46540;46541;46542;46543 46542 5 RNIYLMDTSGK ATKITVRSNNREVAKRNIYLMDTSGKVVTA EVAKRNIYLMDTSGKVVTATLWGEDADKFD K R N G K V 0 1 1 1 0 0 0 1 0 1 1 1 1 0 0 1 1 0 1 0 0 0 11 1 1296.6496 P27694;I3L4R8 P27694 344 354 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.0095039 58.592 1 0.97259 1.0785 NaN 1 Median 0.97259 1.0785 NaN 1 0 Median NaN NaN NaN 0 0 Median 9562500 4670800 4891700 9562500 4670800 4891700 0 0 0 11300 1525 11607 29826 46544 46544 1289 1 RNLQQELETQNQK IEILEKTTTIYEEDKRNLQQELETQNQKLQ DKRNLQQELETQNQKLQRQFSDKRRLEARL K R N Q K L 0 1 2 0 0 4 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 13 1 1627.8278 H7BYN4;Q02241 H7BYN4 587 599 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2;3 2.2532E-18 138.99 2 2 1.1361 1.0287 15.793 4 Median 1.0371 1.1596 20.881 2 0 Median 1.1607 0.99441 8.7243 2 0 Median 43113000 18431000 24682000 38269000 16140000 22129000 4844100 2291000 2553000 11301 1312 11608 29827;29828;29829;29830 46545;46546;46547;46548;46549;46550;46551 46548 7 RNPDTQWITK FFEVILIDPFHKAIRRNPDTQWITKPVHKH HKAIRRNPDTQWITKPVHKHREMRGLTSAG R R N T K P 0 1 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 10 1 1257.6466 A0A024R2Q4;P61313;E7EQV9;E7ENU7 A0A024R2Q4 144 153 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 1.7613E-08 123.79 2 2 0.70092 0.71426 6.3465 4 Median 0.62597 0.74918 2.6669 2 0 Median 0.78063 0.67725 3.4404 2 0 Median 567400000 344930000 222470000 479540000 295310000 184240000 87861000 49625000 38236000 11302 121 11609 29831;29832;29833;29834 46552;46553;46554;46555;46556;46557;46558;46559 46552 8 RNQDLAPNSAEQASILSLVTK KPAPDETSFSEALLKRNQDLAPNSAEQASI PNSAEQASILSLVTKINNVIDNLIVAPGTF K R N T K I 3 1 2 1 0 2 1 0 0 1 3 1 0 0 1 3 1 0 0 1 0 0 21 1 2254.1917 B4DY09;Q53FG3;F4ZW62;Q12905;F4ZW63;X6R6Z1;A0A0A0MRL0 B4DY09 22 42 ILF2 Interleukin enhancer-binding factor 2 yes no 3 6.9488E-08 60.991 1 2 0.88349 0.73829 3.7358 2 Median NaN NaN NaN 0 0 Median 0.88349 0.73829 3.7358 2 0 Median 18864000 6869200 11995000 5765400 0 5765400 13099000 6869200 6229700 11303 1049 11610 29835;29836;29837 46560;46561;46562 46561 3 RNQSFCPTVNLDK PGYFGKVGMKHYHLKRNQSFCPTVNLDKLW LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK K R N D K L 0 1 2 1 1 1 0 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 13 1 1577.762 Q9BQQ5;E9PLL6;Q6NZ52;P46776;E9PJD9 Q9BQQ5 65 77 L27a;RPL27A 60S ribosomal protein L27a yes no 2;3 1.197E-06 111.63 4 3 0.73351 0.84991 15.008 7 Median 0.72566 0.8635 2.8169 4 0 Median 0.75657 0.6683 3.1066 3 0 Plateau 1060600000 598610000 461970000 855800000 485540000 370260000 204780000 113070000 91710000 11304 1247 11611 29838;29839;29840;29841;29842;29843;29844 46563;46564;46565;46566;46567;46568;46569;46570;46571;46572;46573;46574;46575 46568 13 RNSPLTVPMFLSLFSR VTRVYSTALSSFLTKRNSPLTVPMFLSLFS NSPLTVPMFLSLFSRHPVLCQSLLPILVQH K R N S R H 0 2 1 0 0 0 0 0 0 0 3 0 1 2 2 3 1 0 0 1 0 0 16 1 1864.0029 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 989 1004 MYBBP1A Myb-binding protein 1A yes no 3 0.0064295 40.432 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7369500 7369500 0 7369500 7369500 0 0 0 0 11305 1997 11612 29845 46576 46576 1 RNTLQLHR FHHTIGGSRRAAWRRRNTLQLHRYR_____ RRAAWRRRNTLQLHRYR_____________ R R N H R Y 0 2 1 0 0 1 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 8 1 1036.589 A0A024R2Q4;P61313;B4DLP4 A0A024R2Q4 195 202 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 3 0.0018926 82.452 2 0.92577 1.0217 3.0016 2 Median 0.92577 1.0217 3.0016 2 0 Median NaN NaN NaN 0 0 Median 49185000 24945000 24240000 49185000 24945000 24240000 0 0 0 11306 121 11613 29846;29847 46577;46578 46578 2 RNVELFIATSQK LDAVPMSLSYEELVRRNVELFIATSQKFVQ LVRRNVELFIATSQKFVQETELSQRIRDWE R R N Q K F 1 1 1 0 0 1 1 0 0 1 1 1 0 1 0 1 1 0 0 1 0 0 12 1 1404.7725 A0A0A6YYG7;Q6IBW4;H0YC55 A0A0A6YYG7 473 484 NCAPH2 Condensin-2 complex subunit H2 yes no 3 0.058203 15.798 1 2.6516 2.248 NaN 1 Median NaN NaN NaN 0 0 Median 2.6516 2.248 NaN 1 0 Median 641970 185910 456060 0 0 0 641970 185910 456060 11307 491 11614 29848 46579 46579 1 RNVESGEEELASK NWDRREPLSLINVRKRNVESGEEELASKLD RKRNVESGEEELASKLDHYKAKATRHIFLI K R N S K L 1 1 1 0 0 0 4 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 13 1 1446.6951 Q96HS1 Q96HS1 76 88 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 4.385E-13 126.76 2 2.0012 2.3523 2.9338 2 Median 2.0012 2.3523 2.9338 2 0 Median NaN NaN NaN 0 0 Median 88471000 31312000 57159000 88471000 31312000 57159000 0 0 0 11308 1972 11615 29849;29850 46580;46581;46582;46583 46580 4 RNVIFQPVAELK KFTTDDSICVLGISKRNVIFQPVAELKKQT ISKRNVIFQPVAELKKQTDFEHRIPKEQWW K R N L K K 1 1 1 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 0 2 0 0 12 1 1412.814 Q01813;Q8WTZ9;O14943;B1APP8;H0Y757;Q49A78 Q01813 725 736 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0015252 77.379 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27524000 0 27524000 27524000 0 27524000 0 0 0 11309 1677 11616 29851;29852 46584;46585 46585 2 RPAEDMEEEQAFK EETFPNTETNGEFGKRPAEDMEEEQAFKRS GKRPAEDMEEEQAFKRSRNTDEMVELRILL K R P F K R 2 1 0 1 0 1 4 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 13 1 1578.6984 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2;S4R457 B4DUQ1 22 34 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2;3 1.9267E-10 123.95 4 3.2253 3.7225 3.8518 3 Median 3.2253 3.7225 3.8518 3 0 Median NaN NaN NaN 0 0 Median 115570000 20790000 94776000 115570000 20790000 94776000 0 0 0 11310 102 11617 29853;29854;29855;29856 46586;46587;46588;46589;46590;46591 46588 90 5 RPAEGPPTNPPAPGGGSSSSK AGKEARGWGGAGRSRRPAEGPPTNPPAPGG PTNPPAPGGGSSSSKAFQLKSRLLSPLSSA R R P S K A 2 1 1 0 0 0 1 4 0 0 0 1 0 0 6 4 1 0 0 0 0 0 21 1 1946.9446 A0A087WZ13;E9PAU2 A0A087WZ13 537 557 RAVER1 yes no 3 0.039913 16.716 1 1.5848 1.7903 NaN 1 Median 1.5848 1.7903 NaN 1 0 Median NaN NaN NaN 0 0 Median 5847400 1735400 4112000 5847400 1735400 4112000 0 0 0 11311 438 11618 29857 46592 46592 0 RPAGGPQNQFPFQFGR YGNAYPATATAATERRPAGGPQNQFPFQFG PAGGPQNQFPFQFGRDRVSAPPGTNAQQNM R R P G R D 1 2 1 0 0 3 0 3 0 0 0 0 0 3 3 0 0 0 0 0 0 0 16 1 1802.8965 A0A0S2Q0B1;O14497;H0Y488;A0A1B0GTU5;A0A087WUV6;Q96TA9;Q4LE49 A0A0S2Q0B1 1446 1461 ARID1A;ARID1A variant protein AT-rich interactive domain-containing protein 1A yes no 3 0.034208 26.393 2 1.1747 1.0747 NaN 1 Median NaN NaN NaN 0 0 Median 1.1747 1.0747 NaN 1 0 Median 2551900 650550 1901300 0 0 0 2551900 650550 1901300 11312 544 11619 29858;29859 46593;46594;46595 46593 3 RPANQFVPR FPHMLFMVHPEYRPKRPANQFVPRLYGFKI PEYRPKRPANQFVPRLYGFKIHPMAYQLQL K R P P R L 1 2 1 0 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 9 1 1083.5938 N0E4C7;Q5SRQ6;P67870 N0E4C7 178 186 CSNK2B Casein kinase II subunit beta yes no 3 0.00041309 69.812 2 1.0862 1.1922 19.948 2 Median 1.0862 1.1922 19.948 2 0 Median NaN NaN NaN 0 0 Median 45463000 19520000 25943000 45463000 19520000 25943000 0 0 0 11313 1358 11620 29860;29861 46596;46597 46597 2 RPASVSSSAAVEHEQR ASLGSAQPTDLGAHKRPASVSSSAAVEHEQ PASVSSSAAVEHEQREAAAKEKQPPPPAHR K R P Q R E 3 2 0 0 0 1 2 0 1 0 0 0 0 0 1 4 0 0 0 2 0 0 16 1 1709.8445 Q7Z5L9 Q7Z5L9 237 252 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes yes 3 0.019961 39.338 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11314 1880 11621 29862 46598 46598 1 RPAVVYIGSAGK TMPPAVERLARSYLRRPAVVYIGSAGKPHE YLRRPAVVYIGSAGKPHERVEQKVFLMSES R R P G K P 2 1 0 0 0 0 0 2 0 1 0 1 0 0 1 1 0 0 1 2 0 0 12 1 1216.6928 B3KY11;A0A024R0Z3;Q9BUQ8 B3KY11 603 614 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.00035866 81.625 1 0.85226 0.96558 NaN 1 Median 0.85226 0.96558 NaN 1 0 Median NaN NaN NaN 0 0 Median 16648000 9093600 7554100 16648000 9093600 7554100 0 0 0 11315 63 11622 29863 46599;46600 46599 2 RPCTIQVPEPILR MYNLASLRELGETQRRPCTIQVPEPILRKI QRRPCTIQVPEPILRKIETFLNHYPVESSW R R P L R K 0 2 0 0 1 1 1 0 0 2 1 0 0 0 3 0 1 0 0 1 0 0 13 1 1577.8712 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 316 328 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 0.012476 31.389 2 1 1.3624 1.3076 8.2991 2 Median 1.2231 1.2331 NaN 1 0 Median 1.5176 1.3867 NaN 1 0 Median 18186000 11190000 6996700 16156000 10615000 5541400 2030100 574730 1455300 11316 122 11623 29864;29865;29866 46601;46602;46603;46604 46603 4 RPDVSVQGDEVTLYTPEER DAASIAAIVALCHFRRPDVSVQGDEVTLYT SVQGDEVTLYTPEERDPVPLSIHHMPICVS R R P E R D 0 2 0 2 0 1 3 1 0 0 1 0 0 0 2 1 2 0 1 3 0 0 19 1 2189.06 B4DXG8;A5PLM5;Q06265;D6RIY6;D6RA17 B4DXG8 162 180 EXOSC9 Exosome complex component RRP45 yes no 3 6.2674E-10 74.364 2 2 0.86082 0.83999 14.228 3 Median 0.75888 0.83999 NaN 1 0 Median 0.99242 0.89314 19.487 2 0 Median 38650000 25920000 12730000 31966000 22610000 9356200 6683300 3309900 3373400 11317 675 11624 29867;29868;29869;29870 46605;46606;46607;46608;46609;46610;46611;46612 46606 8 RPDVVENQPDAASQLNVDASGNLAK HDFQPHVIVHCAAERRPDVVENQPDAASQL AASQLNVDASGNLAKEAAAVGAFLIYISSD R R P A K E 4 1 3 3 0 2 1 1 0 0 2 1 0 0 2 2 0 0 0 3 0 0 25 1 2607.2889 A8K7A4;A0A140VJP2;Q9NZL9;H7C0X7 A8K7A4 87 111 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 3 0.00087073 37.09 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9985000 0 9985000 9985000 0 9985000 0 0 0 11318 605 11625 29871 46613 46613 1 RPEIPTEQSR SGAILSLPKALLDPRRPEIPTEQSREENLI LLDPRRPEIPTEQSREENLIPYSPDVQIHA R R P S R E 0 2 0 0 0 1 2 0 0 1 0 0 0 0 2 1 1 0 0 0 0 0 10 1 1211.6258 Q8N766;H7C4E3 Q8N766 882 891 EMC1 ER membrane protein complex subunit 1 yes no 2 0.018438 52.579 1 1.0787 1.189 NaN 1 Median 1.0787 1.189 NaN 1 0 Median NaN NaN NaN 0 0 Median 21622000 11646000 9975800 21622000 11646000 9975800 0 0 0 11319 1913 11626 29872 46614 46614 1 RPEIVVATPGR VGGMSTQKQQRMLNRRPEIVVATPGRLWEL MLNRRPEIVVATPGRLWELIKEKHYHLRNL R R P G R L 1 2 0 0 0 0 1 1 0 1 0 0 0 0 2 0 1 0 0 2 0 0 11 1 1193.6881 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;Q59FS7;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0 B4DKV2 344 354 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.033423 44.024 1 0.76147 0.86784 NaN 1 Median 0.76147 0.86784 NaN 1 0 Median NaN NaN NaN 0 0 Median 40439000 21954000 18485000 40439000 21954000 18485000 0 0 0 11320 993 11627 29873 46615 46615 1 RPELEDSTLR PATQVAQVTLQSVQRRPELEDSTLRYLQDL QSVQRRPELEDSTLRYLQDLLAWVEENQHR R R P L R Y 0 2 0 1 0 0 2 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 10 1 1214.6255 Q15149;E9PMV1 Q15149 651 660 PLEC Plectin yes no 2 0.0024442 80.706 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6005900 0 6005900 6005900 0 6005900 0 0 0 11321 1754 11628 29874 46616 46616 1 RPELLTHSTTEVTQPR EKIIQVGNRIKFVIKRPELLTHSTTEVTQP PELLTHSTTEVTQPRTNTPVKEDWNVRITK K R P P R T 0 2 0 0 0 1 2 0 1 0 2 0 0 0 2 1 4 0 0 1 0 0 16 1 1863.9803 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 499 514 GTF2I General transcription factor II-I yes no 3 0.0024366 30.974 1 1 0.88461 0.87677 14.495 2 Median 0.7359 0.79135 NaN 1 0 Median 1.0634 0.9714 NaN 1 0 Median 18337000 11534000 6803400 16257000 10510000 5746300 2080200 1023100 1057100 11322 789 11629 29875;29876 46617;46618 46617 2 RPELNQPAR RPVLVRPGPLLVSARRPELNQPARLTLGRW LLVSARRPELNQPARLTLGRWERAPLASQG R R P A R L 1 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 9 1 1079.5836 Q9NUL7 Q9NUL7 73 81 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 3 0.011258 33.19 1 0.78106 0.76093 NaN 1 Median 0.78106 0.76093 NaN 1 0 Median NaN NaN NaN 0 0 Median 1393800 747150 646670 1393800 747150 646670 0 0 0 11323 2072 11630 29877 46619 46619 1 RPFDPNDR TGMPRRSRFDRPPARRPFDPNDRCYECGEK FDRPPARRPFDPNDRCYECGEKGHYAYDCH R R P D R C 0 2 1 2 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 8 1 1015.4835 Q16629;A0A0B4J1Z1;B4DEK2;C9JAB2;F8WEA1;Q8NB80 Q16629 98 105 SRSF7 Serine/arginine-rich splicing factor 7 no no 2;3 0.00015527 137.06 3 1 1.0435 1.146 28.073 4 Median 1.1103 1.2124 12.515 3 0 Median 0.88204 0.72462 NaN 1 0 Median 285820000 137970000 147850000 256780000 122640000 134140000 29036000 15329000 13707000 11324 1772;1918 11631 29878;29879;29880;29881 46620;46621;46622;46623;46624;46625 46624 6 RPFVAINYAAIR RQVCKNTLRLRQAARRPFVAINYAAIRAEC AARRPFVAINYAAIRAECKMLLNS______ R R P I R A 3 2 1 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 1 1 0 0 12 1 1389.7881 E7EQY4;E7EV10;Q9BTC8;D6W5A2;Q53QZ9 E7EQY4 494 505 MTA3;tmp_locus_6 Metastasis-associated protein MTA3 yes no 3 0.0059292 50.354 1 2 1.0729 1.0308 54.399 2 Median 0.67647 0.70168 NaN 1 0 Median 1.7016 1.5144 NaN 1 0 Median 16199000 9360800 6837800 12855000 8752100 4103300 3343200 608740 2734500 11325 1221 11632 29882;29883;29884 46626;46627;46628 46627 2 RPGAVATGDIGR FKGQPATHGQTKTHRRPGAVATGDIGRVWP THRRPGAVATGDIGRVWPGTKMPGKMGNIY R R P G R V 2 2 0 1 0 0 0 3 0 1 0 0 0 0 1 0 1 0 0 1 0 0 12 1 1168.6313 H0Y9G6;E7ETU7;B4DKM0;P09001;D6RC14;B4DW56 H0Y9G6 254 265 MRPL3 39S ribosomal protein L3, mitochondrial yes no 3 0.00046247 46.159 2 1 1.2791 1.3885 10.489 3 Median 1.2763 1.36 2.9328 2 0 Median 1.778 1.6252 NaN 1 0 Median 27904000 13484000 14420000 26945000 13172000 13773000 959080 312290 646780 11326 992 11633 29885;29886;29887 46629;46630;46631 46629 3 RPGEEGTVMSLAGK ITPCLALGGELVYHRRPGEEGTVMSLAGKY RRPGEEGTVMSLAGKYTLNNWLATVTLGQA R R P G K Y 1 1 0 0 0 0 2 3 0 0 1 1 1 0 1 1 1 0 0 1 0 0 14 1 1430.7188 O96008;K7EKG4 O96008 240 253 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2;3 3.0532E-05 96.82 4 2.1046 2.4615 1.6512 3 Plateau 2.1046 2.4615 1.6512 3 0 Plateau NaN NaN NaN 0 0 Median 169250000 42074000 127180000 169250000 42074000 127180000 0 0 0 11327 1433 11634 29888;29889;29890;29891 46632;46633;46634;46635;46636;46637 46637 1126 6 RPGVYTQVTK YYVYGIVSWGLECGKRPGVYTQVTKFLNWI LECGKRPGVYTQVTKFLNWIKATIKSESGF K R P T K F 0 1 0 0 0 1 0 1 0 0 0 1 0 0 1 0 2 0 1 2 0 0 10 1 1147.635 Q14520 Q14520 536 545 HABP2 Hyaluronan-binding protein 2;Hyaluronan-binding protein 2 50 kDa heavy chain;Hyaluronan-binding protein 2 50 kDa heavy chain alternate form;Hyaluronan-binding protein 2 27 kDa light chain;Hyaluronan-binding protein 2 27 kDa light chain alternate form yes yes 2 7.9729E-16 138.98 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37483000 37483000 0 37483000 37483000 0 0 0 0 11328 1733 11635 29892 46638 46638 1 RPIVEFSLEDR LRLINNNPEIFGPLKRPIVEFSLEDRRKLK GPLKRPIVEFSLEDRRKLKMKELRIQRSLQ K R P D R R 0 2 0 1 0 0 2 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 11 1 1359.7147 A0A024R753;Q9NW13 A0A024R753 572 582 RBM28 RNA-binding protein 28 yes no 3 0.00021306 62.924 1 2 1.1167 1.0125 0.63725 3 Median 0.92318 1.0125 NaN 1 0 Median 1.1488 1.0159 0.85672 2 0 Median 28637000 13295000 15342000 20187000 9469600 10718000 8449900 3825400 4624400 11329 214 11636 29893;29894;29895 46639;46640;46641 46639 3 RPLALQR GADDGSVALWGLSKKRPLALQREAHGLRGE ALWGLSKKRPLALQREAHGLRGEPGLEQPF K R P Q R E 1 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 1 852.52937 O43818 O43818 356 362 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.024162 100.07 2 0.64641 0.72227 1.9686 2 Median 0.64641 0.72227 1.9686 2 0 Median NaN NaN NaN 0 0 Median 98579000 53918000 44662000 98579000 53918000 44662000 0 0 0 11330 1389 11637 29896;29897 46642;46643 46642 2 RPLLGLVLTPTR QELDDKSATCKAYPKRPLLGLVLTPTRELA YPKRPLLGLVLTPTRELAVQVKQHIDAVAR K R P T R E 0 2 0 0 0 0 0 1 0 0 4 0 0 0 2 0 2 0 0 1 0 0 12 1 1334.8398 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;Q59FS7;B4DM03;A0A087WXU8 B4DKV2 293 304 DDX24 ATP-dependent RNA helicase DDX24 yes no 3 0.00024617 62.924 2 2 1.0447 0.92124 18.917 4 Median 0.95984 1.0076 31.51 2 0 Median 1.0447 0.92124 0.59751 2 0 Median 31434000 16347000 15087000 21379000 11578000 9800500 10056000 4769300 5286400 11331 993 11638 29898;29899;29900;29901 46644;46645;46646;46647;46648;46649;46650 46645 7 RPLNIYGDVEMK KTAYCDVHTPPGCTRRPLNIYGDVEMKNGV CTRRPLNIYGDVEMKNGVCRKESSVKTVRS R R P M K N 0 1 1 1 0 0 1 1 0 1 1 1 1 0 1 0 0 0 1 1 0 0 12 1 1433.7337 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61 A0A024R4W4 396 407 BRD1 Bromodomain-containing protein 1 yes no 2 0.0060838 47.938 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6718500 2655300 4063200 6718500 2655300 4063200 0 0 0 11332 162 11639 29902 46651 46651 135 0 RPNKPAELIAK FVNLMKESFETFINKRPNKPAELIAKHVDS FINKRPNKPAELIAKHVDSKLRAGNKEATD K R P A K H 2 1 1 0 0 0 1 0 0 1 1 2 0 0 2 0 0 0 0 0 0 0 11 2 1235.735 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 401 411 CUL4A Cullin-4A no no 3 0.00155 66.267 1 0.79608 0.9502 NaN 1 Median 0.79608 0.9502 NaN 1 0 Median NaN NaN NaN 0 0 Median 20638000 11124000 9513700 20638000 11124000 9513700 0 0 0 11333 1718 11640 29903 46652;46653 46652 2 RPNNLVIGR KSDCSLFMFGSHNKKRPNNLVIGRMYDYHV GSHNKKRPNNLVIGRMYDYHVLDMIELGIE K R P G R M 0 2 2 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 1 1037.6094 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 99 107 RPF2 Ribosome production factor 2 homolog yes no 2 1.9371E-05 125.5 2 0.89573 1.0094 3.3366 2 Median 0.89573 1.0094 3.3366 2 0 Median NaN NaN NaN 0 0 Median 192490000 103230000 89267000 192490000 103230000 89267000 0 0 0 11334 773 11641 29904;29905 46654;46655 46655 2 RPPEDDFR PSEEDFRRPWEEDFRRPPEDDFRHPREEDW PWEEDFRRPPEDDFRHPREEDWRRPPPEHF R R P F R H 0 2 0 2 0 0 1 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 8 1 1030.4832 B9ZVT1;Q8IXT5 B9ZVT1 605 612 RBM12B RNA-binding protein 12B yes no 2 0.020394 68.224 1 1.0942 1.1051 NaN 1 Median 1.0942 1.1051 NaN 1 0 Median NaN NaN NaN 0 0 Median 10558000 4951500 5606600 10558000 4951500 5606600 0 0 0 11335 1122 11642 29906 46656 46656 1 RPPILECLEK TMKGEEKSPKTKKDKRPPILECLEKLEKSK TKKDKRPPILECLEKLEKSKKTFLDKDAQR K R P E K L 0 1 0 0 1 0 2 0 0 1 2 1 0 0 2 0 0 0 0 0 0 0 10 1 1253.6802 Q96T23;H0YER1;H0YCN2 Q96T23 578 587 RSF1 Remodeling and spacing factor 1 yes no 2 0.0049544 70.977 1 1 1.037 0.89366 NaN 1 Median NaN NaN NaN 0 0 Median 1.037 0.89366 NaN 1 0 Median 21954000 20917000 1037400 19575000 19575000 0 2379400 1342000 1037400 11336 1991 11643 29907;29908 46657;46658 46657 2 RPPNSVVTQHEPAGQNEK ARLSEWKAGKGRVLKRPPNSVVTQHEPAGQ NSVVTQHEPAGQNEKPVGSFWTTMAEEDEQ K R P E K P 1 1 2 0 0 2 2 1 1 0 0 1 0 0 3 1 1 0 0 2 0 0 18 1 1986.9872 B2RMQ4;Q8WWK9 B2RMQ4 383 400 CKAP2 Cytoskeleton-associated protein 2 yes no 2;3 2.1007E-12 106.31 3 2 1.0401 1.0343 16.342 4 Median 0.75568 0.87219 13.355 2 0 Median 1.3048 1.1194 0.42989 2 0 Median 91338000 47151000 44187000 57224000 32212000 25012000 34114000 14939000 19175000 11337 895 11644 29909;29910;29911;29912;29913 46659;46660;46661;46662;46663;46664;46665;46666 46662 8 RPPPEHFR PPEDDFRHPREEDWRRPPPEHFRRPPPEHF PREEDWRRPPPEHFRRPPPEHFRRPPPEHF R R P F R R 0 2 0 0 0 0 1 0 1 0 0 0 0 1 3 0 0 0 0 0 0 0 8 1 1034.541 B9ZVT1;Q8IXT5 B9ZVT1 621 628 RBM12B RNA-binding protein 12B yes no 3 0.0049559 52.482 1 1.191 1.3457 NaN 1 Median 1.191 1.3457 NaN 1 0 Median NaN NaN NaN 0 0 Median 4718000 2361600 2356500 4718000 2361600 2356500 0 0 0 11338 1122 11645 29914 46667 46667 1 RPPVLR RAEKKAAGKGDVPTKRPPVLRAGVNTVTTL AGKGDVPTKRPPVLRAGVNTVTTLVENKKA K R P L R A 0 2 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 6 1 736.47079 P62424;Q5T8U3;Q9BY74;Q5T8U2 P62424 132 137 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 0.0050737 145 2 0.84787 0.98449 1.3512 2 Median 0.84787 0.98449 1.3512 2 0 Median NaN NaN NaN 0 0 Median 1551100000 838080000 712980000 1551100000 838080000 712980000 0 0 0 11339 1648 11646 29915;29916 46668;46669 46668 2 RPQGESYDQAIR IGKLIICNVTGIAHRRPQGESYDQAIRNDE AHRRPQGESYDQAIRNDETGLWQCPFCQQD R R P I R N 1 2 0 1 0 2 1 1 0 1 0 0 0 0 1 1 0 0 1 0 0 0 12 1 1418.6902 Q7KZ85 Q7KZ85 1178 1189 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0014899 64.297 2 1.1758 1.2294 15.114 2 Median 1.1758 1.2294 15.114 2 0 Median NaN NaN NaN 0 0 Median 14650000 7378800 7271100 14650000 7378800 7271100 0 0 0 11340 1870 11647 29917;29918 46670;46671 46670 1 RPQYSNPPVQGEVMEGADNQGAGEQGR RRRFPPYYMRRPYGRRPQYSNPPVQGEVME VMEGADNQGAGEQGRPVRQNMYRGYRPRFR R R P G R P 2 2 2 1 0 4 3 5 0 0 0 0 1 0 3 1 0 0 1 2 0 0 27 1 2870.3002 P67809;Q6PKI6;Q7KZ24;H0Y449;A0JLU4;C9J5V9;Q2VIK8 P67809 205 231 YBX1 Nuclease-sensitive element-binding protein 1 yes no 3 4.4356E-11 57.738 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7817900 0 7817900 7817900 0 7817900 0 0 0 11341 1657 11648 29919 46672 46672 1436 1 RPSLGLAPGGLAVVGR TKKFRSAGHGRDSDKRPSLGLAPGGLAVVG PSLGLAPGGLAVVGRSAGGEPGPEAGRAAD K R P G R S 2 2 0 0 0 0 0 4 0 0 3 0 0 0 2 1 0 0 0 2 0 0 16 1 1518.8994 B3KR89;B9EGQ5;M0QXA7;O95785 B3KR89 410 425 WIZ Protein Wiz yes no 3 0.04431 19.39 2 1.0692 0.96865 0.74468 2 Median NaN NaN NaN 0 0 Median 1.0692 0.96865 0.74468 2 0 Median 5856800 2784700 3072100 0 0 0 5856800 2784700 3072100 11342 932 11649 29920;29921 46673;46674 46673 0 RPSQSIASETLTK KSCPPSRKEKENTNKRPSQSIASETLTKPA NKRPSQSIASETLTKPAKQKGAGESSSRPQ K R P T K P 1 1 0 0 0 1 1 0 0 1 1 1 0 0 1 3 2 0 0 0 0 0 13 1 1416.7573 A0A1B0GUH9;A0A1P0AZG4 A0A1B0GUH9 1453 1465 yes no 2 8.7416E-09 107.03 2 1 1.1335 1.3392 NaN 1 Median 1.1335 1.3392 NaN 1 0 Median NaN NaN NaN 0 0 Median 50760000 24285000 26475000 45699000 24285000 21414000 5061300 0 5061300 11343 630 11650 29922;29923;29924 46675;46676;46677;46678;46679 46678 5 RPSSLQSLFGLPEAAGAR SAPPPSNSSSSSAPRRPSSLQSLFGLPEAA SLQSLFGLPEAAGARDSRDNPLRKKKAANL R R P A R D 3 2 0 0 0 1 1 2 0 0 3 0 0 1 2 3 0 0 0 0 0 0 18 1 1855.9904 P39880 P39880 1452 1469 CUX1 Homeobox protein cut-like 1 yes yes 3 0.024769 18.058 1 1.9843 1.7692 NaN 1 Median NaN NaN NaN 0 0 Median 1.9843 1.7692 NaN 1 0 Median 1555900 470340 1085600 0 0 0 1555900 470340 1085600 11344 1556 11651 29925 46680 46680 1 RPSTSEVNNVNPK TLSMAGMSESSFLSKRPSTSEVNNVNPKKP SKRPSTSEVNNVNPKKPKPSESVSGANSSA K R P P K K 0 1 3 0 0 0 1 0 0 0 0 1 0 0 2 2 1 0 0 2 0 0 13 1 1440.7321 A8K124;B4DHL1;A0A024R5W1;Q6N043;H0YLA6;H0YL38;Q9H740 A8K124 164 176 SUHW4;ZNF280D Zinc finger protein 280D yes no 2 0.039132 41.54 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2071500 0 2071500 2071500 0 2071500 0 0 0 11345 189 11652 29926 46681 46681 1 RPTCVIMVK YIPSKTDLGAAAGSKRPTCVIMVKPHEEYQ AAAGSKRPTCVIMVKPHEEYQEAYDECLEE K R P V K P 0 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 1 0 0 2 0 0 9 1 1102.5991 Q9NX24 Q9NX24 122 130 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 2 0.015035 61.161 2 1.0093 1.1986 5.6192 2 Median 1.0093 1.1986 5.6192 2 0 Median NaN NaN NaN 0 0 Median 151960000 73314000 78644000 151960000 73314000 78644000 0 0 0 11346 2077 11653 29927;29928 46682;46683;46684 46684 1910 2 RPTDYFAEMAK LAVLPRLHQLKVPTKRPTDYFAEMAKSDLQ VPTKRPTDYFAEMAKSDLQMQKIRQKLQTK K R P A K S 2 1 0 1 0 0 1 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 11 1 1327.6231 Q6IB29;H7C2Q8;Q99848 Q6IB29 132 142 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.0022821 70.942 2 1 1.308 1.5426 31.317 3 Median 1.3522 1.6096 6.011 2 0 Median 1.1222 0.94045 NaN 1 0 Median 191250000 80110000 111140000 185170000 77305000 107870000 6076100 2805000 3271000 11347 1316 11654;11655 29929;29930;29931 46685;46686;46687;46688;46689 46687 997 5 RPTPQDSPIFLPVDDTSFR GLKKSFYGSTLFLCRRPTPQDSPIFLPVDD QDSPIFLPVDDTSFRWVESLKGILADEDSS R R P F R W 0 2 0 3 0 1 0 0 0 1 1 0 0 2 4 2 2 0 0 1 0 0 19 1 2187.096 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1403 1421 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 4.8234E-06 58.024 2 0.64854 0.57111 6.172 2 Median NaN NaN NaN 0 0 Median 0.64854 0.57111 6.172 2 0 Median 13849000 8607400 5241800 0 0 0 13849000 8607400 5241800 11348 587 11656 29932;29933 46690;46691;46692;46693 46693 4 RPVDSYDIPK AEIERETSVRIYQYRRPVDSYDIPKTEEAS IYQYRRPVDSYDIPKTEEASSGFLPGDRNK R R P P K T 0 1 0 2 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 1 0 0 10 1 1188.6139 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424;H0YDQ3 A0A1P7ZIM8 1010 1019 LMO7 LIM domain only protein 7 yes no 2 0.009486 64.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9098500 0 9098500 9098500 0 9098500 0 0 0 11349 640 11657 29934 46694 46694 1 RPVFPPLCGDGLLSGK GDAGRMDTEEARLAKRPVFPPLCGDGLLSG PVFPPLCGDGLLSGKEETRKIPVPANRYTP K R P G K E 0 1 0 1 1 0 0 3 0 0 3 1 0 1 3 1 0 0 0 1 0 0 16 1 1711.908 B2R823;Q9NRX1;F8WBJ6 B2R823 57 72 PNO1 RNA-binding protein PNO1 yes no 3 9.3161E-05 51.888 1 2 1.2655 1.1 3.5964 3 Median 0.93641 1.1176 NaN 1 0 Median 1.2873 1.0713 3.7366 2 0 Median 61403000 32937000 28466000 51330000 28529000 22801000 10073000 4408500 5664800 11350 858 11658 29935;29936;29937 46695;46696;46697;46698;46699;46700 46697 6 RPVINAGDGVGEHPTQALLDIFTIR HPQPGAVELAAKHCRRPVINAGDGVGEHPT GEHPTQALLDIFTIREELGTVNGMTITMVG R R P I R E 2 2 1 2 0 1 1 3 1 3 2 0 0 1 2 0 2 0 0 2 0 0 25 1 2688.4347 Q53SY7;F8VPD4;P27708;H7C2E4 Q53SY7 1966 1990 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 4 0.01823 17.158 1 0.82618 0.75678 NaN 1 Median NaN NaN NaN 0 0 Median 0.82618 0.75678 NaN 1 0 Median 1330300 590160 740110 0 0 0 1330300 590160 740110 11351 1259 11659 29938 46701 46701 1 RPVSAMFIFSEEK KPAQEGGKGGSEKPKRPVSAMFIFSEEKRR PKRPVSAMFIFSEEKRRQLQEERPELSESE K R P E K R 1 1 0 0 0 0 2 0 0 1 0 1 1 2 1 2 0 0 0 1 0 0 13 1 1539.7755 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0 E9PKP7 372 384 UBTF Nucleolar transcription factor 1 yes no 2;3 0.00028419 90.653 2 1 1.0744 1.2623 23.482 3 Median 1.0214 1.1981 7.3749 2 0 Median 2.0411 1.7813 NaN 1 0 Median 118650000 55897000 62748000 116190000 55092000 61098000 2456000 805460 1650600 11352 1244 11660;11661 29939;29940;29941 46702;46703;46704;46705;46706;46707 46703 952 6 RPWLSATPSSGASAAR AIKKPPSGFKGTIPKRPWLSATPSSGASAA PWLSATPSSGASAARQAGPAPAAATAASKK K R P A R Q 4 2 0 0 0 0 0 1 0 0 1 0 0 0 2 4 1 1 0 0 0 0 16 1 1613.8274 Q9BTC0 Q9BTC0 597 612 DIDO1 Death-inducer obliterator 1 yes yes 3 0.017981 30.536 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6484400 6484400 0 6484400 6484400 0 0 0 0 11353 2002 11662 29942 46708 46708 1 RPYAPINANAIK RRMCRDLLQPRRAARRPYAPINANAIKAEC AARRPYAPINANAIKAECSIRLPKAAKTPL R R P I K A 3 1 2 0 0 0 0 0 0 2 0 1 0 0 2 0 0 0 1 0 0 0 12 1 1326.7408 A0A024R534;O94776 A0A024R534 481 492 MTA2 Metastasis-associated protein MTA2 yes no 2;3 0.00014241 96.668 3 1 0.80163 0.95452 31.374 4 Median 0.75358 0.90743 12.151 3 0 Median 1.8749 1.6241 NaN 1 0 Median 265740000 149300000 116440000 249940000 143580000 106350000 15802000 5713800 10088000 11354 168 11663 29943;29944;29945;29946 46709;46710;46711;46712;46713;46714 46712 6 RPYEPINSIK VSAGSDRKIKFWDLRRPYEPINSIKRFLST FWDLRRPYEPINSIKRFLSTELAWLLPYNG R R P I K R 0 1 1 0 0 0 1 0 0 2 0 1 0 0 2 1 0 0 1 0 0 0 10 1 1215.6612 Q8WUA4;Q53SY8;H0Y4Q6;H7C3X9 Q8WUA4 645 654 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 4.9029E-09 125.48 2 0.77927 0.88014 28.597 2 Median 0.77927 0.88014 28.597 2 0 Median NaN NaN NaN 0 0 Median 38284000 20094000 18190000 38284000 20094000 18190000 0 0 0 11355 1938 11664 29947;29948 46715;46716;46717 46715 3 RPYLGPALLLTPR GRAGAHGLSKGPLEKRPYLGPALLLTPRDR EKRPYLGPALLLTPRDRASGTQGASEDNSG K R P P R D 1 2 0 0 0 0 0 1 0 0 4 0 0 0 3 0 1 0 1 0 0 0 13 1 1465.8769 Q7Z5J4 Q7Z5J4 1466 1478 RAI1 Retinoic acid-induced protein 1 yes yes 3 0.0012658 60.157 2 2 1.4912 1.3469 16.986 2 Median NaN NaN NaN 0 0 Median 1.4912 1.3469 16.986 2 0 Median 15703000 12570000 3132700 10422000 10422000 0 5281200 2148500 3132700 11356 1879 11665 29949;29950;29951;29952 46718;46719;46720;46721;46722 46719 5 RQAELLEK KMSKNKKKKLKKKQKRQAELLEKRMQEIEE KLKKKQKRQAELLEKRMQEIEEMEKESGPG K R Q E K R 1 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 985.55564 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9;D6RBF8;A0A024R704;P78362 Q96SB4 277 284 SRPK1;SRPK2 SRSF protein kinase 1;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal no no 2 0.017876 71.692 1 1.6776 1.9771 NaN 1 Median 1.6776 1.9771 NaN 1 0 Median NaN NaN NaN 0 0 Median 34870000 12418000 22452000 34870000 12418000 22452000 0 0 0 11357 1988;212 11666 29953 46723 46723 1 RQAEQLSAAGEGGDAGR GFTQVTRKGGRRAKKRQAEQLSAAGEGGDA AEQLSAAGEGGDAGRMDTEEARLAKRPVFP K R Q G R M 4 2 0 1 0 2 2 4 0 0 1 0 0 0 0 1 0 0 0 0 0 0 17 1 1671.7925 B2R823;Q9NRX1;F8WBJ6 B2R823 30 46 PNO1 RNA-binding protein PNO1 yes no 2;3 6.5239E-15 86.8 3 2 0.94069 0.96406 6.3074 5 Median 0.9193 1.0442 6.4139 3 0 Plateau 1.1193 1.0039 8.4137 2 0 Median 62084000 31147000 30937000 55346000 28110000 27235000 6738400 3036800 3701700 11358 858 11667 29954;29955;29956;29957;29958 46724;46725;46726;46727;46728;46729;46730;46731 46724 7 RQAEVELASR AERLRRQVQDESQRKRQAEVELASRVKAEA ESQRKRQAEVELASRVKAEAEAAREKQRAL K R Q S R V 2 2 0 0 0 1 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 1 1157.6153 Q15149 Q15149 1648 1657 PLEC Plectin yes yes 2 0.0073665 66.19 2 1 1.8987 1.8829 41.433 2 Median 1.2934 1.4047 NaN 1 0 Median 2.7872 2.5238 NaN 1 0 Median 51931000 29798000 22132000 48800000 29033000 19767000 3131400 765490 2366000 11359 1754 11668 29959;29960;29961 46732;46733;46734 46733 3 RQAQQERDELADEIANSSGK MIQLQEELAAAERAKRQAQQERDELADEIA ERDELADEIANSSGKGALALEEKRRLEARI K R Q G K G 3 2 1 2 0 3 3 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 20 2 2244.0731 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1697 1716 MYH9;FLJ00279 Myosin-9 yes no 3 0.018498 23.293 2 1.534 1.6901 6.6676 2 Median 1.534 1.6901 6.6676 2 0 Median NaN NaN NaN 0 0 Median 20946000 7878300 13068000 20946000 7878300 13068000 0 0 0 11360 81 11669 29962;29963 46735;46736 46735 2 RQAVTNPNNTFYATK AFTADGERLVGMPAKRQAVTNPNNTFYATK RQAVTNPNNTFYATKRLIGRRYDDPEVQKD K R Q T K R 2 1 3 0 0 1 0 0 0 0 0 1 0 1 1 0 3 0 1 1 0 0 15 1 1723.8642 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;D6RJI2;D6RA73 B7Z4V2 93 107 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2;3 0.047367 36.303 1 1 1.445 1.2328 NaN 1 Median NaN NaN NaN 0 0 Median 1.445 1.2328 NaN 1 0 Median 5724200 1284900 4439300 2777100 0 2777100 2947100 1284900 1662200 11361 1092 11670 29964;29965 46737;46738 46738 2 RQDLLSR SVWELLFYREVSEDRRQDLLSRYRAGTLTV YREVSEDRRQDLLSRYRAGTLTVEELGATL R R Q S R Y 0 2 0 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 1 886.49846 A0A075B730;A0A087X1U6;P58107 A0A075B730 2443 2449 EPPK1 Epiplakin no no 2 6.2475E-05 150.05 1 2.2648 2.6166 NaN 1 Median 2.2648 2.6166 NaN 1 0 Median NaN NaN NaN 0 0 Median 68881000 20676000 48205000 68881000 20676000 48205000 0 0 0 11362 397;1622 11671 29966 46739 46739 1 RQDSDLVQCGVTSPSSAEATGK AGKFPAGHSVIQLARRQDSDLVQCGVTSPS QCGVTSPSSAEATGKLAVDTFPARVIKHRA R R Q G K L 2 1 0 2 1 2 1 2 0 0 1 1 0 0 1 4 2 0 0 2 0 0 22 1 2292.0652 Q9HC52 Q9HC52 253 274 CBX8 Chromobox protein homolog 8 yes yes 3 5.7778E-05 41.672 2 2 0.84992 0.74217 10.683 2 Median NaN NaN NaN 0 0 Median 0.84992 0.74217 10.683 2 0 Median 11625000 9502100 2123300 7427500 7427500 0 4197900 2074600 2123300 11363 2052 11672 29967;29968;29969;29970 46740;46741;46742;46743;46744;46745;46746 46741 7 RQELDAFLAQALSPK VLRYMVQWPGARILRRQELDAFLAQALSPK RQELDAFLAQALSPKLYEPDQLQELKIENL R R Q P K L 3 1 0 1 0 2 1 0 0 0 3 1 0 1 1 1 0 0 0 0 0 0 15 1 1685.9101 Q9NZB2;A0A0C4DG79 Q9NZB2 733 747 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 3 0.013428 42.257 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11364 2086 11673 29971 46747 46747 1 RQELEAELAK ELARLQREAAAATQKRQELEAELAKVRAEM AATQKRQELEAELAKVRAEMEVLLASKARA K R Q A K V 2 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1185.6354 Q15149 Q15149 1887 1896 PLEC Plectin yes yes 2 0.020052 51.268 1 1.3416 1.528 NaN 1 Median 1.3416 1.528 NaN 1 0 Median NaN NaN NaN 0 0 Median 19443000 8092000 11351000 19443000 8092000 11351000 0 0 0 11365 1754 11674 29972 46748 46748 1 RQETVTDLAAAGK TEILNYIYSSTVVVKRQETVTDLAAAGKKL VKRQETVTDLAAAGKKLGISFLEDLTDRNF K R Q G K K 3 1 0 1 0 1 1 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 13 1 1358.7154 D6RJE1;D6RE69;D6R9I1;A0A1B0GV48;D6RBC4;B4DYR8;Q8NAP3;D6RHD1 D6RJE1 100 112 ZBTB38 Zinc finger and BTB domain-containing protein 38 yes no 2 0.0034107 65.5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4125600 0 4125600 4125600 0 4125600 0 0 0 11366 632 11675 29973 46749 46749 1 RQIQAAYSILSEVQQAVSQGSSDSQILDLSNR YEIDLQKMPLGKLSKRQIQAAYSILSEVQQ SQGSSDSQILDLSNRFYTLIPHDFGMKKPP K R Q N R F 3 2 1 2 0 6 1 1 0 3 3 0 0 0 0 7 0 0 1 2 0 0 32 1 3490.7652 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 704 735 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 5.2455E-78 157.43 2 2 0.90911 0.87302 15.545 4 Median 0.70312 0.8028 3.7619 2 0 Median 1.1686 1.0133 12.979 2 0 Median 530320000 292240000 238090000 405260000 235810000 169450000 125070000 56429000 68636000 11367 139 11676 29974;29975;29976;29977 46750;46751;46752;46753;46754;46755;46756;46757 46753 8 RQLEEAEEEAQR KDQADKASTRLKQLKRQLEEAEEEAQRANA QLKRQLEEAEEEAQRANASRRKLQRELEDA K R Q Q R A 2 2 0 0 0 2 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 12 1 1486.7012 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1877 1888 MYH9;FLJ00279 Myosin-9 yes no 2;3 1.9515E-37 179.35 4 3 1.9253 2.2707 11.223 7 Median 1.7748 1.9481 7.8677 4 0 Median 2.7284 2.3751 3.2209 3 0 Median 595020000 209380000 385640000 537190000 194130000 343060000 57824000 15244000 42580000 11368 81 11677 29978;29979;29980;29981;29982;29983;29984 46758;46759;46760;46761;46762;46763;46764;46765 46761 8 RQLEEQEEALR QKMLEELNKQIEEQKRQLEEQEEALRQQRA EEQKRQLEEQEEALRQQRAAVGVSMAHFSV K R Q L R Q 1 2 0 0 0 2 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 1 1399.7056 Q9BTC0 Q9BTC0 1491 1501 DIDO1 Death-inducer obliterator 1 yes yes 2;3 0.0063092 69.721 3 1 1.5448 1.5993 46.814 3 Median 1.0212 1.1397 60.148 2 0 Median 1.8281 1.5993 NaN 1 0 Median 64329000 30878000 33451000 59827000 29047000 30780000 4502600 1831300 2671200 11369 2002 11678 29985;29986;29987;29988 46766;46767;46768;46769 46769 4 RQLETLGQEK SNMDNMFESYINNLRRQLETLGQEKLKLEA INNLRRQLETLGQEKLKLEAELGNMQGLVE R R Q E K L 0 1 0 0 0 2 2 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1200.6463 CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8W1U3;F8VP67;CON__Q9H552 CON__P05787 149 158 KRT8 Keratin, type II cytoskeletal 8 yes no 2 4.4984E-22 167.09 2 2 1.4344 1.4239 15.912 4 Median 1.0313 1.2258 6.2297 2 0 Median 1.9142 1.6024 1.7472 2 0 Median 158120000 73933000 84191000 145740000 69603000 76138000 12383000 4329900 8053100 + 11370 1156 11679 29989;29990;29991;29992 46770;46771;46772;46773;46774 46772 5 RQLSLDINK SEEEEESRPMSYDEKRQLSLDINKLPGEKL MSYDEKRQLSLDINKLPGEKLGRVVHIIQA K R Q N K L 0 1 1 1 0 1 0 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 1 1085.6193 O60885;A0A024R7H8;A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A0G2JHN8;A0A140T9I1 A0A024RCR5 648 656 BRD4;BRD2 Bromodomain-containing protein 4;Bromodomain-containing protein 2 no no 2 0.0017247 84.743 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7625800 7625800 0 7625800 7625800 0 0 0 0 11371 367;1399 11680 29993 46775 46775 1 RQLYMVSK FPRMNLLTRTTEGKKRQLYMVSKELRNVLL RTTEGKKRQLYMVSKELRNVLLNNSEKMKV K R Q S K E 0 1 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 1 1 0 0 8 1 1023.5535 Q08J23 Q08J23 558 565 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.011192 65.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3333600 0 3333600 3333600 0 3333600 0 0 0 11372 1694 11681 29994 46776 46776 1526 1 RQNGDDPLLTYR NKSNEDQSMGNWQIKRQNGDDPLLTYRFPP QIKRQNGDDPLLTYRFPPKFTLKAGQVVTI K R Q Y R F 0 2 1 2 0 1 0 1 0 0 2 0 0 0 1 0 1 0 1 0 0 0 12 1 1446.7215 P02545;W8QEH3;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 471 482 LMNA Prelamin-A/C;Lamin-A/C yes no 3 8.1634E-09 103.46 1 2 1.1664 1.0556 21.882 3 Median 1.2604 1.3709 NaN 1 0 Median 1.0985 0.96799 12.258 2 0 Median 63179000 31873000 31306000 53418000 27381000 26038000 9760700 4492600 5268100 11373 1440 11682 29995;29996;29997 46777;46778;46779 46777 3 RQNIGVATFIGLDK VDSIDIAQECVNFLKRQNIGVATFIGLDKM KRQNIGVATFIGLDKMAVWAKKMTEIQTPE K R Q D K M 1 1 1 1 0 1 0 2 0 2 1 1 0 1 0 0 1 0 0 1 0 0 14 1 1530.8518 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 660 673 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 2.1682E-05 119.39 4 3 0.87308 1.0256 23.679 7 Median 0.83219 0.98645 7.6014 4 0 Median 1.7351 1.517 4.2859 3 0 Median 311070000 153420000 157650000 229870000 123050000 106810000 81201000 30367000 50834000 11374 2070 11683 29998;29999;30000;30001;30002;30003;30004 46780;46781;46782;46783;46784;46785;46786;46787;46788;46789;46790;46791 46783 12 RQPQEEVVHEDQGK KSSDREGTRAGEEERRQPQEEVVHEDQGKK RRQPQEEVVHEDQGKKPQDQLVIERERKWE R R Q G K K 0 1 0 1 0 3 3 1 1 0 0 1 0 0 1 0 0 0 0 2 0 0 14 1 1677.8071 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424;H0YDQ3 A0A1P7ZIM8 937 950 LMO7 LIM domain only protein 7 yes no 3 0.0004543 56.599 2 1 2.5946 2.8992 88.054 3 Median 2.4311 2.6941 10.379 2 0 Median 13.426 12.316 NaN 1 0 Median 12802000 3075300 9726700 11689000 2995700 8693400 1112800 79570 1033200 11375 640 11684 30005;30006;30007 46792;46793;46794 46792 3 RQQEQQVPILEK GGVHISGLHTESAPRRQQEQQVPILEKFCF APRRQQEQQVPILEKFCFTPHTEEGCLSER R R Q E K F 0 1 0 0 0 4 2 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 12 1 1494.8154 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1105 1116 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 0.0016899 73.781 3 1.6747 1.8637 5.8964 2 Median 1.6747 1.8637 5.8964 2 0 Median NaN NaN NaN 0 0 Median 57477000 14358000 43120000 57477000 14358000 43120000 0 0 0 11376 587 11685 30008;30009;30010 46795;46796;46797 46795 3 RQQQEEEDLNLEDR VESRAYADPCSRRKKRQQQEEEDLNLEDRG KRQQQEEEDLNLEDRGEETVLGGGTREAES K R Q D R G 0 2 1 2 0 3 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 14 1 1800.8238 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9 Q5T3I0 339 352 GPATCH4 G patch domain-containing protein 4 yes no 3 4.9438E-05 69.729 2 0.89249 0.9587 13.707 2 Median 0.89249 0.9587 13.707 2 0 Median NaN NaN NaN 0 0 Median 22514000 11715000 10800000 22514000 11715000 10800000 0 0 0 11377 1820 11686 30011;30012 46798;46799 46799 1 RQSLELQK AEVDELVLQTKRSSRRQSLELQKCEEILHK QTKRSSRRQSLELQKCEEILHKIVKYRFSW R R Q Q K C 0 1 0 0 0 2 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 1 1000.5665 Q9UIG0 Q9UIG0 1340 1347 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0050996 89.296 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27598000 0 27598000 27598000 0 27598000 0 0 0 11378 2103 11687 30013 46800 46800 1 RQTQSESSNYDSELEK KKGKSAKSSIISKKKRQTQSESSNYDSELE QTQSESSNYDSELEKEIKSMSKIGAARTTK K R Q E K E 0 1 1 1 0 2 3 0 0 0 1 1 0 0 0 4 1 0 1 0 0 0 16 1 1899.8446 A4LAA3;P46100;A0A096LNW1;A0A096LNL9 A4LAA3 808 823 ATRX Transcriptional regulator ATRX yes no 3 0.039513 15.766 1 2.5264 2.3049 NaN 1 Median NaN NaN NaN 0 0 Median 2.5264 2.3049 NaN 1 0 Median 1632300 435840 1196500 0 0 0 1632300 435840 1196500 11379 672 11688 30014 46801;46802 46801 2 RQVDQLTNDK SRLGDLYEEEMRELRRQVDQLTNDKARVEV MRELRRQVDQLTNDKARVEVERDNLAEDIM R R Q D K A 0 1 1 2 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 10 1 1215.6208 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;A0A1B0GUA0 V9HWE1 159 168 HEL113;VIM Vimentin yes no 2 1.0294E-40 199.67 3 1 2.1855 2.0843 43.676 2 Median 1.3941 1.5305 NaN 1 0 Median 3.4262 2.8385 NaN 1 0 Median 25012000 12089000 12923000 21139000 11205000 9933900 3873800 884460 2989300 11380 1457 11689 30015;30016;30017;30018 46803;46804;46805;46806;46807 46805 5 RQVGPQSGEVR SKKRKKPSRPAKTRKRQVGPQSGEVRKEAP KTRKRQVGPQSGEVRKEAPRDETKADTDTA K R Q V R K 0 2 0 0 0 2 1 2 0 0 0 0 0 0 1 1 0 0 0 2 0 0 11 1 1211.6371 A0A0A0MS90;A8K654;B4DI41;Q9UIS9;B4DUR3;Q59EP6;K7EPZ6 A0A0A0MS90 98 108 MBD1 Methyl-CpG-binding domain protein 1 yes no 2 0.011389 53.756 1 0.77703 0.86085 NaN 1 Median 0.77703 0.86085 NaN 1 0 Median NaN NaN NaN 0 0 Median 10798000 5745200 5052900 10798000 5745200 5052900 0 0 0 11381 477 11690 30019 46808 46808 1 RQVLEGEEIAYK NNSDKDQSLGNWRIKRQVLEGEEIAYKFTP RIKRQVLEGEEIAYKFTPKYILRAGQMVTV K R Q Y K F 1 1 0 0 0 1 3 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 12 1 1433.7514 Q03252;A0A0A7M1X5 Q03252 505 516 LMNB2 Lamin-B2 yes no 2 0.031552 40.496 2 1.4464 1.2135 7.1893 2 Median NaN NaN NaN 0 0 Median 1.4464 1.2135 7.1893 2 0 Median 7636200 3103900 4532300 0 0 0 7636200 3103900 4532300 11382 1682 11691 30020;30021 46809;46810;46811 46809 3 RQVQNLVNK IKELEKEREKILEYKRQVQNLVNKSKKIVQ KILEYKRQVQNLVNKSKKIVQLKPRNPDYR K R Q N K S 0 1 2 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 1 1097.6305 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 433 441 DSP;DSP variant protein Desmoplakin yes no 2 0.00028355 107.59 2 0.61787 0.69567 15.97 2 Median 0.61787 0.69567 15.97 2 0 Median NaN NaN NaN 0 0 Median 42923000 25697000 17226000 42923000 25697000 17226000 0 0 0 11383 1486 11692 30022;30023 46812;46813 46813 2 RQVQSLMVHQR DVRSVVTTARMQVLKRQVQSLMVHQRKLEA QVLKRQVQSLMVHQRKLEAELLQIEERHQE K R Q Q R K 0 2 0 0 0 3 0 0 1 0 1 0 1 0 0 1 0 0 0 2 0 0 11 1 1380.7408 B4DGM3;A0A024R1S7;Q969G3;K7EMQ8;J3QKS7;H7C048 B4DGM3 211 221 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 3 0.0058888 45.433 1 1.3808 1.3521 NaN 1 Median 1.3808 1.3521 NaN 1 0 Median NaN NaN NaN 0 0 Median 2905200 1224800 1680400 2905200 1224800 1680400 0 0 0 11384 86 11693 30024 46814 46814 83 1 RQVSIEEGER VIIMLVGNKTDLADKRQVSIEEGERKAKEL DLADKRQVSIEEGERKAKELNVMFIETSAK K R Q E R K 0 2 0 0 0 1 3 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 10 1 1201.6051 Q6FGX3;Q53ET8;A0A024R5J5;A0A024R5H8;P20340;B7Z5Z9;Q53S08 Q6FGX3 134 143 RAB6A;RAB6C Ras-related protein Rab-6A yes no 2 0.0060505 70.977 1 0.68772 0.72174 NaN 1 Median 0.68772 0.72174 NaN 1 0 Median NaN NaN NaN 0 0 Median 13872000 7900600 5971800 13872000 7900600 5971800 0 0 0 11385 182 11694 30025 46815 46815 1 RQYELLK KKDKEVIQLKERDRKRQYELLKLERNFQKQ QLKERDRKRQYELLKLERNFQKQSNVLRRK K R Q L K L 0 1 0 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 1 948.53927 Q59HG1;O95239;Q6PKB2;Q2VIQ3 Q59HG1 685 691 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.016799 117.17 1 1 1.1592 1.1563 16.775 2 Median 0.87635 1.0269 NaN 1 0 Median 1.5334 1.3019 NaN 1 0 Median 78526000 36771000 41755000 55467000 27483000 27984000 23059000 9288500 13770000 11386 1803 11695 30026;30027 46816;46817;46818 46816 3 RSAAEMYGSSFDLDYDFQR LAAEPKVNRGKAGVKRSAAEMYGSSFDLDY EMYGSSFDLDYDFQRDYYDRMYSYPARVPP K R S Q R D 2 2 0 3 0 1 1 1 0 0 1 0 1 2 0 3 0 0 2 0 0 0 19 1 2256.9746 G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V2D6;G3V5X6;G3V3K6;G3V251 G3V4W0 99 117 HNRNPC yes no 3 1.1249E-05 54.668 1 1 0.45096 0.40795 NaN 1 Median NaN NaN NaN 0 0 Median 0.45096 0.40795 NaN 1 0 Median 3804300 2501700 1302500 0 0 0 3804300 2501700 1302500 11387 837 11696 30028;30029 46819;46820 46820 665 2 RSEKPPAGSICR ESSEGGERGDALSQKRSEKPPAGSICRAEP SQKRSEKPPAGSICRAEPEAGEEQAGDDRD K R S C R A 1 2 0 0 1 0 1 1 0 1 0 1 0 0 2 2 0 0 0 0 0 0 12 2 1356.6932 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 269 280 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 3 0.00092009 62.042 1 0.87494 0.97971 NaN 1 Median 0.87494 0.97971 NaN 1 0 Median NaN NaN NaN 0 0 Median 9071700 4614400 4457300 9071700 4614400 4457300 0 0 0 11388 1618 11697 30030 46821 46821 1 RSELNQDAEPASSQETK EILLREFEERQSLRKRSELNQDAEPASSQE ELNQDAEPASSQETKDSSSQEVLSELRALS K R S T K D 2 1 1 1 0 2 3 0 0 0 1 1 0 0 1 3 1 0 0 0 0 0 17 1 1888.8763 Q08E77;A0A024RDV0;Q5TAP6 Q08E77 431 447 UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog C yes no 2 0.0030808 38.021 2 0.99606 1.0981 29.376 2 Median 0.99606 1.0981 29.376 2 0 Median NaN NaN NaN 0 0 Median 16342000 8696400 7645300 16342000 8696400 7645300 0 0 0 11389 393 11698 30031;30032 46822;46823 46822 2 RSELSQDAEPAGSQETK EILLREFEERRSLRKRSELSQDAEPAGSQE ELSQDAEPAGSQETKDSGSQEVLSELRVLS K R S T K D 2 1 0 1 0 2 3 1 0 0 1 1 0 0 1 3 1 0 0 0 0 0 17 1 1831.8548 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 433 449 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2;3 2.0853E-68 230.16 4 4 1.2782 1.3136 4.1656 8 Median 1.1019 1.3034 1.2308 4 0 Median 1.5906 1.3727 5.7315 4 0 Median 404150000 184320000 219830000 331830000 157480000 174350000 72317000 26843000 45474000 11390 2008 11699 30033;30034;30035;30036;30037;30038;30039;30040 46824;46825;46826;46827;46828;46829;46830;46831;46832;46833;46834 46827 11 RSFIPSLVEK GDVMIHPVTNRPADKRSFIPSLVEKEKVSR RPADKRSFIPSLVEKEKVSRMVHAIKMGWI K R S E K E 0 1 0 0 0 0 1 0 0 1 1 1 0 1 1 2 0 0 0 1 0 0 10 1 1174.671 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9;A0A075B729 Q14137 244 253 BOP1 Ribosome biogenesis protein BOP1 yes no 2 2.8384E-05 99.568 2 0.88513 1.0577 NaN 1 Median 0.88513 1.0577 NaN 1 0 Median NaN NaN NaN 0 0 Median 53345000 30654000 22691000 53345000 30654000 22691000 0 0 0 11391 1726 11700 30041;30042 46835;46836;46837 46837 3 RSFLLDLLNATGK ENITQKVVWVEESDKRSFLLDLLNATGKDS DKRSFLLDLLNATGKDSLTLVFVETKKGAD K R S G K D 1 1 1 1 0 0 0 1 0 0 4 1 0 1 0 1 1 0 0 0 0 0 13 1 1446.8195 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1 A0A0D9SFB3 428 440 DDX3X ATP-dependent RNA helicase DDX3X yes no 2;3 0.00047177 78.653 4 1.668 1.8516 2.8443 2 Median 1.668 1.8516 2.8443 2 0 Median NaN NaN NaN 0 0 Median 44005000 18747000 25257000 44005000 18747000 25257000 0 0 0 11392 522 11701 30043;30044;30045;30046 46838;46839;46840;46841;46842 46839 5 RSFVPEEEK PKKIPIRNTRTRGRKRSFVPEEEKHEERVP RTRGRKRSFVPEEEKHEERVPRERRQRQSV K R S E K H 0 1 0 0 0 0 3 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 9 1 1119.556 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 834 842 PHF14 PHD finger protein 14 yes no 2 0.0010435 96.665 1 1 1.0435 1.0315 25.74 2 Median 0.74221 0.85984 NaN 1 0 Median 1.467 1.2374 NaN 1 0 Median 38339000 22325000 16014000 34480000 20779000 13701000 3858800 1545800 2313000 11393 590 11702 30047;30048 46843;46844 46843 2 RSGASAAPAASAAAALAPSATR RRSRSSAAAKLRGQKRSGASAAPAASAAAA PAASAAAALAPSATRTRRSASQAGSKSQAV K R S T R T 11 2 0 0 0 0 0 1 0 0 1 0 0 0 2 4 1 0 0 0 0 0 22 1 1925.0079 A0A0M3HER2 A0A0M3HER2 17 38 yes yes 3 4.4841E-12 72.916 2 2 1.4378 1.3651 6.8575 4 Median 1.2222 1.36 0.51491 2 0 Median 1.673 1.4602 9.5021 2 0 Median 126770000 51526000 75241000 80341000 33671000 46670000 46426000 17855000 28571000 11394 541 11703 30049;30050;30051;30052 46845;46846;46847;46848;46849;46850;46851;46852;46853;46854;46855;46856 46849 12 RSGASGASAAPAASAAAALAPSATR RRSRSSAAAKLRGQKRSGASGASAAPAASA PAASAAAALAPSATRTRRSASQAGSKSQAV K R S T R T 12 2 0 0 0 0 0 2 0 0 1 0 0 0 2 5 1 0 0 0 0 0 25 1 2140.0985 Q7Z7K6 Q7Z7K6 17 41 CENPV Centromere protein V yes yes 3 5.3082E-28 94.087 2 2 1.4561 1.4065 11.104 4 Median 1.2453 1.3997 5.2299 2 0 Median 1.7591 1.5283 16.288 2 0 Median 273030000 118070000 154960000 154240000 72749000 81494000 118780000 45317000 73466000 11395 1882 11704 30053;30054;30055;30056 46857;46858;46859;46860;46861;46862;46863;46864;46865 46858 9 RSGVDGPHFPLSLSTCLFGR ______________________________ GPHFPLSLSTCLFGRGIECDIRIQLPVVSK K R S G R G 0 2 0 1 1 0 0 3 1 0 3 0 0 2 2 3 1 0 0 1 0 0 20 1 2202.1004 P46013;Q70L72;Q70L73 P46013 12 31 MKI67 Antigen KI-67 no no 3;4 3.8758E-07 52.451 4 3.5107 2.9543 5.5271 3 Median NaN NaN NaN 0 0 Median 3.5107 2.9543 5.5271 3 0 Median 34643000 7449700 27194000 0 0 0 34643000 7449700 27194000 11396 1569;1864 11705 30057;30058;30059;30060 46866;46867;46868;46869;46870;46871;46872;46873 46869 8 RSIAGIDQWLEVFCEQEEK KRGKKMCSDGEKAEKRSIAGIDQWLEVFCE GIDQWLEVFCEQEEKWVCVDCVHGVVGQPL K R S E K W 1 1 0 1 1 2 4 1 0 2 1 1 0 1 0 1 0 1 0 1 0 0 19 1 2336.1107 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPK7;D2CPK0;D2CPJ1;D2CPJ3;D2CPJ4;D2CPJ5;D2CPJ9;D2CPK5;D2CPI8 A0A024R2M8 523 541 XPC DNA repair protein complementing XP-C cells no no 3 0.026351 20.446 1 1.3424 1.1121 NaN 1 Median NaN NaN NaN 0 0 Median 1.3424 1.1121 NaN 1 0 Median 3874900 1890200 1984700 0 0 0 3874900 1890200 1984700 11397 118;1184 11706 30061 46874 46874 0 RSIQEELQQLR VVRREEAAVDAQQQKRSIQEELQQLRQSSE QQQKRSIQEELQQLRQSSEAEIQAKARQAE K R S L R Q 0 2 0 0 0 3 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 11 1 1398.7579 Q15149 Q15149 1553 1563 PLEC Plectin yes yes 3 0.041474 21.656 1 2.0623 1.8838 NaN 1 Median NaN NaN NaN 0 0 Median 2.0623 1.8838 NaN 1 0 Median 2104100 718970 1385200 0 0 0 2104100 718970 1385200 11398 1754 11707 30062 46875 46875 1 RSIQFVDWCPTGFK VPKDVNAAIATIKTKRSIQFVDWCPTGFKV KRSIQFVDWCPTGFKVGINYQPPTVVPGGD K R S F K V 0 1 0 1 1 1 0 1 0 1 0 1 0 2 1 1 1 1 0 1 0 0 14 1 1739.8454 B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;P68366 B3KT06 304 317 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain no no 3 0.022162 22.154 1 1.2086 1.0041 NaN 1 Median NaN NaN NaN 0 0 Median 1.2086 1.0041 NaN 1 0 Median 3686400 1712700 1973700 0 0 0 3686400 1712700 1973700 11399 922;1659 11708 30063 46876 46876 1 RSLDPLGSEEEAEASEDDSLHLLGGGGR NMQYALAVSKQRGTKRSLDPLGSEEEAEAS ASEDDSLHLLGGGGRDSEEEMLA_______ K R S G R D 2 2 0 3 0 0 5 5 1 0 5 0 0 0 1 4 0 0 0 0 0 0 28 1 2895.3482 Q15269;A0A0B4J2E5 Q15269 884 911 PWP2 Periodic tryptophan protein 2 homolog yes no 4 2.7319E-19 76.899 1 2.8542 2.4925 NaN 1 Median NaN NaN NaN 0 0 Median 2.8542 2.4925 NaN 1 0 Median 4583600 856940 3726700 0 0 0 4583600 856940 3726700 11400 1756 11709 30064 46877 46877 1 RSPSVSSPEPAEK SSSPETRSRTPPRHRRSPSVSSPEPAEKSR HRRSPSVSSPEPAEKSRSSRRRRSASSPRT R R S E K S 1 1 0 0 0 0 2 0 0 0 0 1 0 0 3 4 0 0 0 1 0 0 13 1 1369.6838 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1726 1738 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.017405 57.348 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11401 619 11710 30065 46878 46878 1 RSQAGVSSGAPPGR LSLPGYRPTTRSSARRSQAGVSSGAPPGRN RRSQAGVSSGAPPGRNSFYMGTCQDEPEQL R R S G R N 2 2 0 0 0 1 0 3 0 0 0 0 0 0 2 3 0 0 0 1 0 0 14 1 1325.68 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1872 1885 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 0.027848 30.483 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 501410 501410 0 501410 501410 0 0 0 0 11402 186;1747 11711 30066 46879 46879 1 RSSPAAFINPPIGTVTPALK KPRQVADAREKISLKRSSPAAFINPPIGTV AFINPPIGTVTPALKLTKTIQVPQQKAMAP K R S L K L 3 1 1 0 0 0 0 1 0 2 1 1 0 1 4 2 2 0 0 1 0 0 20 1 2036.1419 Q96DI9;F6VRR5;B4E0L0;Q9BY77;Q8WUT1;F8WCX5;Q659C6;B4DSH9;Q6R954;F8WEE2 Q96DI9 121 140 POLDIP3;DKFZp434G0310;PDIP46 Polymerase delta-interacting protein 3 yes no 3 0.00038368 34.689 2 0.81729 0.68363 11.141 2 Median NaN NaN NaN 0 0 Median 0.81729 0.68363 11.141 2 0 Median 7804200 3781400 4022700 0 0 0 7804200 3781400 4022700 11403 1063 11712 30067;30068 46880;46881;46882 46881 3 RSTTLDAGNIK NTTFEDFVAIISSTKRSTTLDAGNIKLAFN SSTKRSTTLDAGNIKLAFNSLLEKAEARER K R S I K L 1 1 1 1 0 0 0 1 0 1 1 1 0 0 0 1 2 0 0 0 0 0 11 1 1174.6306 O75400;B4DPY2 O75400 708 718 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.014605 50.292 1 1.3381 1.4871 NaN 1 Median 1.3381 1.4871 NaN 1 0 Median NaN NaN NaN 0 0 Median 10469000 4721800 5746800 10469000 4721800 5746800 0 0 0 11404 1404 11713 30069 46883 46883 1 RSTVAQLVK EKKKLYCIYVAIGQKRSTVAQLVKRLTDAD VAIGQKRSTVAQLVKRLTDADAMKYTIVVS K R S V K R 1 1 0 0 0 1 0 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 9 1 1000.6029 V9HW26;P25705;K7ENJ4 V9HW26 253 261 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.038702 48.794 1 1.3411 1.5093 NaN 1 Median 1.3411 1.5093 NaN 1 0 Median NaN NaN NaN 0 0 Median 13535000 5147500 8387800 13535000 5147500 8387800 0 0 0 11405 1518 11714 30070 46884 46884 1 RSVENQESVEIINDLK VKVSSVTKRTPRRIKRSVENQESVEIINDL SVENQESVEIINDLKVSTVTSPSRMIRKLR K R S L K V 0 1 2 1 0 1 3 0 0 2 1 1 0 0 0 2 0 0 0 2 0 0 16 1 1871.9589 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1877 1892 AHCTF1 Protein ELYS yes no 3 6.2815E-07 85.636 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11796000 0 11796000 0 0 0 11796000 0 11796000 11406 1945 11715 30071 46885 46885 1 RSVYIESR LNGGLQEEELSTSLKRSVYIESRIGTSTSF ELSTSLKRSVYIESRIGTSTSFDSGIAGLS K R S S R I 0 2 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 1 1 0 0 8 1 1008.5352 O95235 O95235 243 250 KIF20A Kinesin-like protein KIF20A yes yes 2 0.0022807 109.71 2 0.67687 0.75288 6.302 2 Median 0.67687 0.75288 6.302 2 0 Median NaN NaN NaN 0 0 Median 69384000 41115000 28269000 69384000 41115000 28269000 0 0 0 11407 1421 11716 30072;30073 46886;46887;46888 46888 3 RTAAENDFVTLK LVEDYKKKYEDEINKRTAAENDFVTLKKDV INKRTAAENDFVTLKKDVDNAYMIKVELQS K R T L K K 2 1 1 1 0 0 1 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 12 1 1363.7096 CON__P35908;P35908 CON__P35908 281 292 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 1.351E-05 91.313 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56755000 56755000 0 56755000 56755000 0 0 0 0 + 11408 1166 11717 30074 46889 46889 1 RTAITTPNFK KSLYTDESSKPGKNKRTAITTPNFKKLHEA PGKNKRTAITTPNFKKLHEAHFKEMESIDQ K R T F K K 1 1 1 0 0 0 0 0 0 1 0 1 0 1 1 0 3 0 0 0 0 0 10 1 1147.635 Q9BXS6;A8K4B4;H0YMD2 Q9BXS6 177 186 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.015846 57.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22304000 22304000 0 22304000 22304000 0 0 0 0 11409 2014 11718 30075 46890 46890 1 RTAQEVETYR VKKKNFYQEHPDLARRTAQEVETYRRSKEI PDLARRTAQEVETYRRSKEITVRGHNCPKP R R T Y R R 1 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 10 1 1251.6208 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;J3QRQ7;J3KRX8;J3QR02;C1IK54 B4DN41 57 66 DDX5;DKFZp686J01190;DDX5-ETV4 fusion Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0043209 77.379 2 1.4523 1.656 NaN 1 Median 1.4523 1.656 NaN 1 0 Median NaN NaN NaN 0 0 Median 51042000 16668000 34374000 51042000 16668000 34374000 0 0 0 11410 1009 11719 30076;30077 46891;46892;46893 46893 3 RTDDIPVWDQEFLK KDDPPPPEDDENKEKRTDDIPVWDQEFLKY KRTDDIPVWDQEFLKYTLRKTTVSLQAANY K R T L K Y 0 1 0 3 0 1 1 0 0 1 1 1 0 1 1 0 1 1 0 1 0 0 14 1 1760.8733 E5RJR5;P63208;E5RGM3;E7ERH2;F8W8N3 E5RJR5 81 94 SKP1 S-phase kinase-associated protein 1 yes no 3 0.023422 21.841 1 0.71549 0.7909 NaN 1 Median 0.71549 0.7909 NaN 1 0 Median NaN NaN NaN 0 0 Median 7185800 4247800 2938000 7185800 4247800 2938000 0 0 0 11411 1215 11720 30078 46894 46894 1 RTDEAAFQK LKELLTRELPSFLGKRTDEAAFQKLMSNLD PSFLGKRTDEAAFQKLMSNLDSNRDNEVDF K R T Q K L 2 1 0 1 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 9 1 1064.5251 P26447;Q5Q9Z3 P26447 49 57 S100A4 Protein S100-A4 yes no 2 0.0024427 100.02 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7434600 0 7434600 7434600 0 7434600 0 0 0 11412 1520 11721 30079;30080 46895;46896 46896 2 RTELFIAAEGIHTGQFVYCGK PLAKVVFRDPYRFKKRTELFIAAEGIHTGQ AAEGIHTGQFVYCGKKAQLNIGNVLPVGTM K R T G K K 2 1 0 0 1 1 2 3 1 2 1 1 0 2 0 0 2 0 1 1 0 0 21 1 2396.1947 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 72 92 RPL8 60S ribosomal protein L8 yes no 3 0.0011797 27.52 2 0.91819 0.77906 0.11259 2 Median NaN NaN NaN 0 0 Median 0.91819 0.77906 0.11259 2 0 Median 18325000 10062000 8262900 0 0 0 18325000 10062000 8262900 11413 1653 11722 30081;30082 46897;46898;46899;46900;46901 46898 5 RTEMENEFVLIK LVEDFKNKYEDEINKRTEMENEFVLIKKDV INKRTEMENEFVLIKKDVDEAYMNKVELES K R T I K K 0 1 1 0 0 0 3 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 12 1 1507.7705 CON__P05787;P05787;Q969I0;F8VUG2;F8W1U3;F8VP67;CON__H-INV:HIT000016045 CON__P05787 186 197 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 5.1406E-05 92.856 4 2 1.3486 1.591 8.3032 4 Median 1.3486 1.591 8.3032 4 0 Median NaN NaN NaN 0 0 Median 416800000 173480000 243330000 412290000 173480000 238820000 4510900 0 4510900 + 11414 1156 11723;11724 30083;30084;30085;30086;30087;30088 46902;46903;46904;46905;46906;46907;46908;46909;46910;46911 46909 867 10 RTEQEEDEELLTESSK DEKQNLLSVGDYRHRRTEQEEDEELLTESS TEQEEDEELLTESSKATNVCTRFEDSPSYV R R T S K A 0 1 0 1 0 1 6 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 16 1 1921.8753 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 145 160 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2;3 7.8541E-18 127.36 4 2 2.4684 2.8892 33.689 3 Median 2.3897 2.7287 8.083 2 0 Median 5.9156 4.8494 NaN 1 0 Median 107180000 37298000 69881000 84502000 36636000 47866000 22676000 661860 22014000 11415 1391 11725 30089;30090;30091;30092;30093;30094 46912;46913;46914;46915;46916;46917;46918;46919;46920 46918 9 RTFDETVSTYVPLAQQVEDFHK GCTIVKPFNLSQGKKRTFDETVSTYVPLAQ STYVPLAQQVEDFHKRTPNRYHLRSKKDDI K R T H K R 1 1 0 2 0 2 2 0 1 0 1 1 0 2 1 1 3 0 1 3 0 0 22 1 2609.2762 Q643R0;Q9ULW0;B3KM90 Q643R0 315 336 HCTP4;TPX2 Targeting protein for Xklp2 yes no 4 0.020435 16.593 1 1.4233 1.1994 NaN 1 Median NaN NaN NaN 0 0 Median 1.4233 1.1994 NaN 1 0 Median 4028000 1443100 2584900 0 0 0 4028000 1443100 2584900 11416 1837 11726 30095 46921;46922 46922 2 RTGAIVDVPVGEELLGR VFGNDKLIKEGDIVKRTGAIVDVPVGEELL GAIVDVPVGEELLGRVVDALGNAIDGKGPI K R T G R V 1 2 0 1 0 0 2 3 0 1 2 0 0 0 1 0 1 0 0 3 0 0 17 1 1779.9843 V9HW26;P25705;K7ERX7;B4DGW3;K7EK77;K7EQH4;K7EJP1 V9HW26 133 149 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 3 0.00035622 40.962 2 1 0.92696 0.92367 46.566 3 Median 1.1555 1.2198 39.322 2 0 Median 0.70722 0.6387 NaN 1 0 Median 18222000 7122400 11100000 15341000 5738000 9603500 2880500 1384400 1496100 11417 1518 11727 30096;30097;30098 46923;46924;46925 46923 2 RTIAQDYGVLK GGLGPMNIPLVSDPKRTIAQDYGVLKADEG SDPKRTIAQDYGVLKADEGISFRGLFIIDD K R T L K A 1 1 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1262.6983 Q06830;A0A0A0MSI0;B2R4P2 Q06830 110 120 PRDX1 Peroxiredoxin-1 yes no 2 0.0028804 65.347 2 2 2.8609 2.8355 22.275 4 Median 2.9417 3.5125 13.403 2 0 Median 2.8609 2.4509 3.7349 2 0 Median 368620000 100020000 268600000 337400000 91870000 245530000 31221000 8152300 23069000 11418 1690 11728 30099;30100;30101;30102 46926;46927;46928;46929;46930;46931 46927 6 RTIQFVDWCPTGFK VPKDVNAAIATIKTKRTIQFVDWCPTGFKV KRTIQFVDWCPTGFKVGINYQPPTVVPGGD K R T F K V 0 1 0 1 1 1 0 1 0 1 0 1 0 2 1 0 2 1 0 1 0 0 14 1 1753.861 Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 Q71U36 339 352 TUBA1C;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 3 0.0026264 36.638 2 0.84375 0.71816 3.2319 2 Median NaN NaN NaN 0 0 Median 0.84375 0.71816 3.2319 2 0 Median 6045900 2982100 3063800 0 0 0 6045900 2982100 3063800 11419 1257;1869 11729 30103;30104 46932;46933 46932 2 RTIVEELLADSEFR PADFYHSRIPKKQRKRTIVEELLADSEFRR KRTIVEELLADSEFRRYNRRKYSEIMAEKA K R T F R R 1 2 0 1 0 0 3 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 14 1 1676.8733 Q5QJE6 Q5QJE6 712 725 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 3 2.9323E-05 69.594 3 2 1.0993 1.0702 19.955 4 Median 0.83567 0.92458 3.178 2 0 Median 1.4675 1.2894 8.8465 2 0 Median 49956000 25611000 24345000 36950000 20481000 16468000 13006000 5129100 7877000 11420 1813 11730 30105;30106;30107;30108;30109 46934;46935;46936;46937;46938;46939;46940;46941;46942 46942 9 RTLAEPPAK LEGTGKEGKKASSRKRTLAEPPAKGLLQPV KASSRKRTLAEPPAKGLLQPVKLSRAELYK K R T A K G 2 1 0 0 0 0 1 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 9 1 981.56073 Q9H6R4;B4DF80;A0A0A0MRW6 Q9H6R4 39 47 NOL6 Nucleolar protein 6 yes no 2 0.00081413 98.582 2 2 1.2216 1.2186 3.6895 4 Median 1.0049 1.1948 6.0488 2 0 Median 1.4223 1.2186 0.57878 2 0 Median 216110000 101190000 114920000 184550000 87622000 96925000 31564000 13567000 17997000 11421 2038 11731 30110;30111;30112;30113 46943;46944;46945;46946;46947;46948;46949;46950 46947 8 RTLLIDELNK EEAEAERLLLIATGKRTLLIDELNKLKNEG IATGKRTLLIDELNKLKNEGPQRKNKASPQ K R T N K L 0 1 1 1 0 0 1 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 10 1 1213.703 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1K5 B4DSL6 647 656 ANLN Actin-binding protein anillin yes no 2 0.0097069 63.816 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3400400 0 3400400 3400400 0 3400400 0 0 0 11422 294 11732 30114 46951 46951 1 RTLTQIK GLYINFNADKLQSNKRTLTQIKEKKKNELL ADKLQSNKRTLTQIKEKKKNELLQKAVITP K R T I K E 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 7 1 858.5287 Q5QJE6 Q5QJE6 590 596 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.02829 97.602 1 1 1.1425 1.1799 8.7652 2 Median 0.91828 1.1089 NaN 1 0 Median 1.4215 1.2553 NaN 1 0 Median 202140000 103510000 98623000 160510000 86093000 74418000 41625000 17420000 24205000 11423 1813 11733 30115;30116 46952;46953 46953 2 RTNAENEFVTIK MVEDYRNKYEDEINKRTNAENEFVTIKKDV INKRTNAENEFVTIKKDVDGAYMTKVDLQA K R T I K K 1 1 2 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 12 1 1420.731 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 277 288 KRT1 Keratin, type II cytoskeletal 1 no no 2 9.719E-09 115.57 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 791150000 791150000 0 791150000 791150000 0 0 0 0 + 11424 1308;1309 11734 30117;30118 46954;46955 46955 2 RTNIIPVLEDAR FSHRAGRDLVNVAKKRTNIIPVLEDARHPL AKKRTNIIPVLEDARHPLKYRMLIGMVDVI K R T A R H 1 2 1 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 12 1 1395.7834 A6NHQ2 A6NHQ2 219 230 FBLL1 rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 yes yes 2 0.00034538 80.014 2 0.75557 0.84503 2.4149 2 Median 0.75557 0.84503 2.4149 2 0 Median NaN NaN NaN 0 0 Median 112360000 65423000 46941000 112360000 65423000 46941000 0 0 0 11425 683 11735 30119;30120 46956;46957;46958 46958 3 RTNSTFNQVVLK IYLRLLVKLYRFLARRTNSTFNQVVLKRLF LARRTNSTFNQVVLKRLFMSRTNRPPLSLS R R T L K R 0 1 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 12 1 1405.7678 G3V203;A0A024QZD1;J3QQ67;Q07020;Q0QEW2;H0YHA7;F8VYV2;B4DDY5;A0A075B7A0 G3V203 38 49 RPL18 60S ribosomal protein L18 yes no 2 0.005521 56.404 1 0.83732 0.9366 NaN 1 Median 0.83732 0.9366 NaN 1 0 Median NaN NaN NaN 0 0 Median 11944000 7329000 4615200 11944000 7329000 4615200 0 0 0 11426 16 11736 30121 46959 46959 1 RTPDLPEEEYVK EEDPEAADSGEPQNKRTPDLPEEEYVKEEI QNKRTPDLPEEEYVKEEIQENEEAVKKMLV K R T V K E 0 1 0 1 0 0 3 0 0 0 1 1 0 0 2 0 1 0 1 1 0 0 12 1 1474.7304 Q9NYB0 Q9NYB0 229 240 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 2 0.0095438 50.284 1 1.3974 1.5189 NaN 1 Median 1.3974 1.5189 NaN 1 0 Median NaN NaN NaN 0 0 Median 15716000 7748200 7967400 15716000 7748200 7967400 0 0 0 11427 2082 11737 30122 46960 46960 1 RTPNNVVSTPAPSPDASQLASSLSSQK MDDAWKYNGDVEDIKRTPNNVVSTPAPSPD SPDASQLASSLSSQKEVAATEEDVTRLPSP K R T Q K E 3 1 2 1 0 2 0 0 0 0 2 1 0 0 4 7 2 0 0 2 0 0 27 1 2738.3835 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424 A0A1P7ZIM8 562 588 LMO7 LIM domain only protein 7 yes no 3 0.0016169 30.206 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3746000 0 3746000 3746000 0 3746000 0 0 0 11428 640 11738 30123 46961 46961 1 RTPSATFQQATK ELPKGNKEDSLKKIKRTPSATFQQATKIKK KIKRTPSATFQQATKIKKLRAGKLSPLKSK K R T T K I 2 1 0 0 0 2 0 0 0 0 0 1 0 1 1 1 3 0 0 0 0 0 12 1 1334.6943 Q03164;E9PR05;Q9UPD0;Q9Y6P1 Q03164 258 269 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2;3 0.00010133 98.105 2 3 1.5951 1.4644 28.718 5 Median 0.81593 0.93585 0.52715 2 0 Median 1.9455 1.6418 7.0815 3 0 Plateau 75281000 34936000 40346000 56133000 28554000 27579000 19148000 6381600 12767000 11429 1680 11739 30124;30125;30126;30127;30128 46962;46963;46964;46965;46966;46967;46968;46969 46965 8 RTQIVTEIISEIR FLVERLLHIIIDDNKRTQIVTEIISEIRAP NKRTQIVTEIISEIRAPIVTVGVNNDPADV K R T I R A 0 2 0 0 0 1 2 0 0 4 0 0 0 0 0 1 2 0 0 1 0 0 13 1 1556.8886 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 458 470 NCAPG Condensin complex subunit 3 no no 3 0.00016914 68.972 3 3 0.86319 0.9332 1.6118 2 Median 0.86319 0.9332 1.6118 2 0 Median NaN NaN NaN 0 0 Median 35413000 13587000 21826000 27979000 13587000 14392000 7434800 0 7434800 11430 1995;1289 11740 30129;30130;30131;30132;30133;30134 46970;46971;46972;46973;46974;46975 46970 6 RTTTFFQFCNADSGTLLCTDVAAR DLPVLAIHGKQKQNKRTTTFFQFCNADSGT NADSGTLLCTDVAARGLDIPEVDWIVQYDP K R T A R G 3 2 1 2 2 1 0 1 0 0 2 0 0 3 0 1 5 0 0 1 0 0 24 1 2751.2745 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452;Q59FR7 Q4ZG72 340 363 DDX18 ATP-dependent RNA helicase DDX18 yes no 3 2.868E-12 68.895 2 1.4293 1.2484 14.652 2 Median NaN NaN NaN 0 0 Median 1.4293 1.2484 14.652 2 0 Median 27904000 12084000 15820000 0 0 0 27904000 12084000 15820000 11431 303 11741 30135;30136 46976;46977;46978;46979 46978 4 RTVAAPSVFIFPPSDEQLK YRPPTLGQGTKVEIKRTVAAPSVFIFPPSD APSVFIFPPSDEQLKSGTASVVCLLNNFYP K R T L K S 2 1 0 1 0 1 1 0 0 1 1 1 0 2 3 2 1 0 0 2 0 0 19 1 2101.1208 Q0KKI6;V9HW34;Q6PJF2;Q7Z3Y4;Q6PIL8;Q6P5S8;Q6GMX0;Q8TCD0;P01834;S6AWD6;S6AWF4;S6BGE9;S6AWD3;S6C4R6;S6B2A1;S6B2C3;S6B294;S6AWE3;Q569I7 Q0KKI6 113 131 HEL-213;IGK@;IGKC Ig kappa chain C region yes no 3 0.0076274 23.726 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 820070 820070 0 0 0 0 820070 820070 0 11432 1439 11742 30137 46980 46980 1 RVAMIDETR ETLRARFYAVQKLARRVAMIDETRNSLYQY VQKLARRVAMIDETRNSLYQYFLSYLQSLL R R V T R N 1 2 0 1 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 9 1 1089.5601 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 644 652 IMMT MICOS complex subunit MIC60 no no 2 0.037676 53.968 1 1.2927 1.3601 NaN 1 Median 1.2927 1.3601 NaN 1 0 Median NaN NaN NaN 0 0 Median 14106000 4585000 9521400 14106000 4585000 9521400 0 0 0 11433 1774;1029;1128 11743 30138 46981 46981 811 1 RVCEEIAIIPSK EKYYTRLGNDFHTNKRVCEEIAIIPSKKLR TNKRVCEEIAIIPSKKLRNKIAGYVTHLMK K R V S K K 1 1 0 0 1 0 2 0 0 3 0 1 0 0 1 1 0 0 0 1 0 0 12 1 1413.765 H0YN88;A0A075B716;P08708;H0YN73 H0YN88 33 44 RPS17 40S ribosomal protein S17 yes no 2;3 0.00017817 91.855 3 1 0.63276 0.74383 53.828 3 Median 0.72943 0.86486 21.319 2 0 Median 0.40875 0.35338 NaN 1 0 Median 136120000 77709000 58415000 121800000 67749000 54049000 14327000 9960400 4366200 11434 396 11744 30139;30140;30141;30142 46982;46983;46984;46985;46986;46987 46983 6 RVDAVIPPYPR FFSEDKYYRVNLRTRRVDAVIPPYPRSIAQ LRTRRVDAVIPPYPRSIAQYWLGCPVPGQA R R V P R S 1 2 0 1 0 0 0 0 0 1 0 0 0 0 3 0 0 0 1 2 0 0 11 1 1281.7194 CON__Q3ZBS7 CON__Q3ZBS7 459 469 yes yes 2 0.026807 51.268 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15585000 15585000 0 15585000 15585000 0 0 0 0 + 11435 1173 11745 30143 46988;46989 46989 2 RVEEDIQQQK KRLKNTLTQTTENLRRVEEDIQQQKATGSE TENLRRVEEDIQQQKATGSEVSQRKQQLEV R R V Q K A 0 1 0 1 0 3 2 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 10 1 1271.647 P15924 P15924 1425 1434 DSP Desmoplakin yes yes 2 9.4864E-08 114.5 1 0.52558 0.5742 NaN 1 Median 0.52558 0.5742 NaN 1 0 Median NaN NaN NaN 0 0 Median 9308200 6064800 3243400 9308200 6064800 3243400 0 0 0 11436 1486 11746 30144 46990 46990 1 RVEILNEHR IGCGRLNEPIKVLCRRVEILNEHRGEKLNR IKVLCRRVEILNEHRGEKLNRVKMVEKEKD R R V H R G 0 2 1 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 9 1 1164.6364 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 273 281 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.00036266 85.29 3 1 1.1869 1.1969 35.501 2 Median 0.82224 0.93115 NaN 1 0 Median 1.7132 1.5384 NaN 1 0 Median 51966000 36179000 15787000 48494000 34751000 13744000 3472100 1428700 2043400 11437 2070 11747 30145;30146;30147;30148 46991;46992;46993;46994;46995 46993 5 RVEILSEGNEVQFIQLAK TMMLNVRNLFEQLVRRVEILSEGNEVQFIQ ILSEGNEVQFIQLAKDFEDFRKKWQRTDHE R R V A K D 1 1 1 0 0 2 3 1 0 2 2 1 0 1 0 1 0 0 0 2 0 0 18 1 2072.1266 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VWX0;F8W0L1;F8VZ66;F8VV47;F8VVE5;F8VUW9;F8VV39;F8VS54 B2RE34 18 35 RACGAP1 Rac GTPase-activating protein 1 yes no 3 1.1008E-05 59.9 2 1.5039 1.2562 4.8031 2 Median NaN NaN NaN 0 0 Median 1.5039 1.2562 4.8031 2 0 Median 12462000 5232900 7229300 0 0 0 12462000 5232900 7229300 11438 68 11748 30149;30150 46996;46997 46996 2 RVETSEHFR LTRESTRGSRRTPRKRVETSEHFRIDGPVI RRTPRKRVETSEHFRIDGPVISESTPIAET K R V F R I 0 2 0 0 0 0 2 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 9 1 1159.5734 A0A024RBE7;P42167 A0A024RBE7 261 269 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 3 1.1823E-05 99.815 1 1.2477 1.2264 NaN 1 Median 1.2477 1.2264 NaN 1 0 Median NaN NaN NaN 0 0 Median 4985400 2268500 2716900 4985400 2268500 2716900 0 0 0 11439 334 11749 30151 46998 46998 1 RVFQEQER VRTDYVVRPSTGEEKRVFQEQERYRYSQPH PSTGEEKRVFQEQERYRYSQPHKAFTFRMH K R V E R Y 0 2 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 8 1 1090.552 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 519 526 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.019396 69.598 1 0.54001 0.5916 NaN 1 Median 0.54001 0.5916 NaN 1 0 Median NaN NaN NaN 0 0 Median 12790000 7824000 4965500 12790000 7824000 4965500 0 0 0 11440 135 11750 30152 46999 46999 1 RVGLPPGK EVQGPPAKKAAVPAKRVGLPPGKAAAKASE KAAVPAKRVGLPPGKAAAKASESSSSEESS K R V G K A 0 1 0 0 0 0 0 2 0 0 1 1 0 0 2 0 0 0 0 1 0 0 8 1 822.50757 B2RAU8;A0A0A0MRM9;Q14978;S4R3C2 B2RAU8 111 118 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.032956 58.981 1 1.1061 1.2486 NaN 1 Median 1.1061 1.2486 NaN 1 0 Median NaN NaN NaN 0 0 Median 14897000 6896500 8000800 14897000 6896500 8000800 0 0 0 11441 468 11751 30153 47000 47000 1 RVLDELTLTK VALRQSVEADINGLRRVLDELTLTKADLEM INGLRRVLDELTLTKADLEMQIESLTEELA R R V T K A 0 1 0 1 0 0 1 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 10 1 1186.6921 CON__P13645;P13645 CON__P13645 257 266 KRT10 Keratin, type I cytoskeletal 10 yes no 2 0.0035885 76.228 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13219000 13219000 0 0 0 0 13219000 13219000 0 + 11442 1161 11752 30154;30155 47001;47002 47001 2 RVLGQLHGGPSSCSATGTNR TEPGSSGSPIYSPEKRVLGQLHGGPSSCSA LHGGPSSCSATGTNRSDQYGRVFTSWTGGG K R V N R S 1 2 1 0 1 1 0 4 1 0 2 0 0 0 1 3 2 0 0 1 0 0 20 1 2054.0076 CON__P15636 CON__P15636 409 428 yes yes 3;4 5.6253E-11 85.855 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 142010000 142010000 0 134800000 134800000 0 7209800 7209800 0 + 11443 1163 11753 30156;30157;30158;30159 47003;47004;47005;47006 47003 4 RVLLGETGK ERAYQKQPTIFQNKKRVLLGETGKEKLPRY IFQNKKRVLLGETGKEKLPRYYKNIGLGFK K R V G K E 0 1 0 0 0 0 1 2 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 1 971.57638 P62280;M0QZC5;M0R1H6 P62280 22 30 RPS11 40S ribosomal protein S11 yes no 2 1.5608E-05 127.94 2 2 0.91231 0.91338 6.5718 4 Median 0.75868 0.91417 11.27 2 0 Median 1.0401 0.91338 1.5948 2 0 Median 1448700000 787900000 660780000 1227200000 681570000 545590000 221520000 106330000 115190000 11444 1641 11754 30160;30161;30162;30163 47007;47008;47009;47010;47011;47012;47013;47014 47009 8 RVLNVTNLEFSDTR KLKEFVDYYYSTNRKRVLNVTNLEFSDTRM KRVLNVTNLEFSDTRMSSFVEPPDIVKKLS K R V T R M 0 2 2 1 0 0 1 0 0 0 2 0 0 1 0 1 2 0 0 2 0 0 14 1 1662.8689 O75151 O75151 188 201 PHF2 Lysine-specific demethylase PHF2 yes yes 3 0.0021277 38.613 2 1.7876 1.5999 17.262 2 Median NaN NaN NaN 0 0 Median 1.7876 1.5999 17.262 2 0 Median 7736000 3073000 4663000 0 0 0 7736000 3073000 4663000 11445 1400 11755 30164;30165 47015;47016;47017;47018;47019 47017 5 RVLPPNWK IESRIHRLARYYKTKRVLPPNWKYESSTAS ARYYKTKRVLPPNWKYESSTASALVA____ K R V W K Y 0 1 1 0 0 0 0 0 0 0 1 1 0 0 2 0 0 1 0 1 0 0 8 1 1008.5869 P62277 P62277 133 140 RPS13 40S ribosomal protein S13 yes yes 2 0.013087 81.32 3 1.1881 1.3824 NaN 1 Median 1.1881 1.3824 NaN 1 0 Median NaN NaN NaN 0 0 Median 54425000 20611000 33814000 54425000 20611000 33814000 0 0 0 11446 1640 11756 30166;30167;30168 47020;47021;47022 47022 3 RVLPPSALQSVA LAQVSAHPWVRANSRRVLPPSALQSVA___ NSRRVLPPSALQSVA_______________ R R V V A - 2 1 0 0 0 1 0 0 0 0 2 0 0 0 2 2 0 0 0 2 0 0 12 1 1236.719 B2RC06;J3KT86;Q96GD4 Q96GD4 333 344 AURKB Aurora kinase B no no 2 0.0095381 51.268 2 2 1.5097 1.4337 27.462 4 Median 1.0317 1.135 1.9863 2 0 Median 2.1552 1.8238 2.9803 2 0 Median 106600000 46908000 59696000 93063000 42314000 50748000 13541000 4593700 8947300 11447 881;1967 11757 30169;30170;30171;30172 47023;47024;47025;47026 47024 2 RVLQALEGLK VMPSHFSRGSKSVARRVLQALEGLKMVEKD KSVARRVLQALEGLKMVEKDQDGGRKLTPQ R R V L K M 1 1 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 10 1 1125.687 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 B0ZBD0 102 111 RPS19 40S ribosomal protein S19 yes no 2 0.016174 54.416 2 1.141 1.3082 1.8671 2 Median 1.141 1.3082 1.8671 2 0 Median NaN NaN NaN 0 0 Median 58675000 29026000 29649000 58675000 29026000 29649000 0 0 0 11448 811 11758 30173;30174 47027;47028 47027 2 RVLTLR NDFVMLKGCVVGTKKRVLTLRKSLLVQTKR KGCVVGTKKRVLTLRKSLLVQTKRRALEKI K R V L R K 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 6 1 756.49701 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;B3KS36 P39023 343 348 RPL3;rpl3 60S ribosomal protein L3 no no 2 9.3553E-06 161.47 2 1.0352 1.1959 17.337 2 Median 1.0352 1.1959 17.337 2 0 Median NaN NaN NaN 0 0 Median 1131500000 527480000 604050000 1131500000 527480000 604050000 0 0 0 11449 1554;936 11759 30175;30176 47029;47030 47029 2 RVMGLVPAK SLLGMEFSGRDASGKRVMGLVPAKGLATSV RDASGKRVMGLVPAKGLATSVLLSPDFLWD K R V A K G 1 1 0 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 2 0 0 9 1 969.57936 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1610 1618 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.033306 55.676 1 2.0681 2.216 NaN 1 Median 2.0681 2.216 NaN 1 0 Median NaN NaN NaN 0 0 Median 12464000 4446100 8018000 12464000 4446100 8018000 0 0 0 11450 587 11760 30177 47031 47031 440 1 RVNQAIWLLCTGAR AGTVRRQAVDVSPLRRVNQAIWLLCTGARE RRVNQAIWLLCTGAREAAFRNIKTIAECLA R R V A R E 2 2 1 0 1 1 0 1 0 1 2 0 0 0 0 0 1 1 0 1 0 0 14 1 1656.8882 M0R0F0;Q53G25;A0A024R4Q8;P46782;M0R0R2;M0QZN2 M0R0F0 146 159 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 3 0.027092 39.005 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11451 160 11761 30178 47032 47032 1 RVNSASSSNPPAEVDPDTILK LSDSPSMKKESELPRRVNSASSSNPPAEVD SSNPPAEVDPDTILKALFKSSGASVTTQPT R R V L K A 2 1 2 2 0 0 1 0 0 1 1 1 0 0 3 4 1 0 0 2 0 0 21 1 2196.1022 Q96DI9;F6VRR5;B4E0L0;Q9BY77 Q96DI9 376 396 POLDIP3 Polymerase delta-interacting protein 3 yes no 3 0.0050895 21.349 2 0.93829 0.78113 7.97 2 Median NaN NaN NaN 0 0 Median 0.93829 0.78113 7.97 2 0 Median 8330800 4148800 4182000 0 0 0 8330800 4148800 4182000 11452 1063 11762 30179;30180 47033;47034;47035;47036;47037;47038 47035 6 RVPSPVLIK ESLAAVAYLLNLVLKRVPSPVLIKKFSDAS LNLVLKRVPSPVLIKKFSDASKAFMDIMSA K R V I K K 0 1 0 0 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 2 0 0 9 1 1007.6492 B3KMR5;Q5JTH9 B3KMR5 177 185 RRP12 RRP12-like protein yes no 2 0.0035972 76.17 1 1.3202 1.5598 NaN 1 Median 1.3202 1.5598 NaN 1 0 Median NaN NaN NaN 0 0 Median 150560000 68075000 82489000 150560000 68075000 82489000 0 0 0 11453 907 11763 30181 47039;47040 47039 2 RVPTAPAATSK INAENKAKINMAGAKRVPTAPAATSKPGLR AGAKRVPTAPAATSKPGLRPRTALGDIGNK K R V S K P 3 1 0 0 0 0 0 0 0 0 0 1 0 0 2 1 2 0 0 1 0 0 11 1 1097.6193 P14635;E9PC90;H1UBN2;D6RHI0 P14635 26 36 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 3.8502E-17 161.19 2 2 0.94946 0.95253 10.211 4 Median 0.72387 0.85977 7.7442 2 0 Median 1.2085 1.0075 1.1883 2 0 Median 147350000 83848000 63501000 135880000 78711000 57168000 11470000 5137200 6333200 11454 1483 11764 30182;30183;30184;30185 47041;47042;47043;47044;47045;47046;47047;47048 47043 8 RVPVLGK KVKLMRFDDPLLGPRRVPVLGKEYTEKTPI DDPLLGPRRVPVLGKEYTEKTPISEHAVFN R R V G K E 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 7 1 767.50176 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 1081 1087 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.021027 105.27 1 1.5288 1.7843 NaN 1 Median 1.5288 1.7843 NaN 1 0 Median NaN NaN NaN 0 0 Median 46811000 17587000 29224000 46811000 17587000 29224000 0 0 0 11455 883 11765 30186 47049 47049 1 RVPVPPAAGS RIKEARNSVCIIPLRRVPVPPAAGS_____ IIPLRRVPVPPAAGS_______________ R R V G S - 2 1 0 0 0 0 0 1 0 0 0 0 0 0 3 1 0 0 0 2 0 0 10 1 949.53451 O43818 O43818 466 475 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.0030597 71.877 1 1 0.97109 0.96429 7.5084 2 Median 0.88757 1.0169 NaN 1 0 Median 1.0625 0.91443 NaN 1 0 Median 54536000 29451000 25085000 51158000 27957000 23201000 3377500 1493400 1884100 11456 1389 11766 30187;30188 47050;47051;47052;47053;47054;47055;47056 47050 7 RVSDILR KPHLITHGFSSRLGKRVSDILRYLFPVPKD GFSSRLGKRVSDILRYLFPVPKDDSHRVIT K R V L R Y 0 2 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 7 1 857.5083 H0Y714;Q96G21;B8ZZ47;E7ENR5;B9A008 H0Y714 187 193 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.014432 106.04 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32415000 32415000 0 29236000 29236000 0 3178300 3178300 0 11457 1286 11767 30189;30190 47057;47058 47057 2 RVSISEGDDK VTKNLVPGESVYGEKRVSISEGDDKIEYRA VYGEKRVSISEGDDKIEYRAWNPFRSKLAA K R V D K I 0 1 0 2 0 0 1 1 0 1 0 1 0 0 0 2 0 0 0 1 0 0 10 1 1104.5411 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 61 70 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 2.0181E-05 103.69 1 1 0.79959 0.80656 12.273 2 Median 0.73065 0.87969 NaN 1 0 Median 0.87503 0.73952 NaN 1 0 Median 108110000 64115000 43990000 100120000 59729000 40391000 7985300 4385800 3599400 11458 1506 11768 30191;30192 47059;47060;47061 47059 3 RVSLEPHQGPGTPESK QIAEGTGITTRQQRKRVSLEPHQGPGTPES VSLEPHQGPGTPESKKATSCFPRPMTPRDR K R V S K K 0 1 0 0 0 1 2 2 1 0 1 1 0 0 3 2 1 0 0 1 0 0 16 1 1717.8747 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1975 1990 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 2.0195E-57 151.04 3 2 0.86047 0.78307 11.21 4 Median 0.69978 0.8007 19.215 2 0 Median 0.9159 0.78307 1.6782 2 0 Median 80852000 46099000 34753000 55231000 32595000 22636000 25620000 13504000 12116000 11459 186;1747 11769 30193;30194;30195;30196;30197 47062;47063;47064;47065;47066;47067;47068 47065 7 RVTFALPDDAETEDTGVLNVK LQENEDNKQHKESLKRVTFALPDDAETEDT PDDAETEDTGVLNVKKNSDEVKSSFEKRQE K R V V K K 2 1 1 3 0 0 2 1 0 0 2 1 0 1 1 0 3 0 0 3 0 0 21 1 2289.1489 B3KPV5;O00566;U3KQ48 B3KPV5 330 350 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3 3.703E-16 106.86 2 1.3181 1.136 1.4822 2 Median NaN NaN NaN 0 0 Median 1.3181 1.136 1.4822 2 0 Median 44036000 19327000 24709000 0 0 0 44036000 19327000 24709000 11460 924 11770 30198;30199 47069;47070;47071;47072;47073 47069 5 RVTIMPK VGLFEDTNLCAIHAKRVTIMPKDIQLARRI NLCAIHAKRVTIMPKDIQLARRIR______ K R V P K D 0 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 7 1 843.50004 K7EK07;B2R4P9;P84243;B4E380;Q16695;A8K4Y7;Q6NXT2;P68431;Q5TEC6;Q71DI3 K7EK07 117 123 H3F3B;H3F3A;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 0.0097987 131.27 2 2 0.52686 0.64117 32.113 4 Median 0.52686 0.64117 0.83331 2 0 Median 0.72149 0.64456 55.613 2 0 Median 6910000000 4240800000 2669200000 5891900000 3687200000 2204700000 1018100000 553650000 464460000 11461 827;1661;1865;1828 11771;11772 30200;30201;30202;30203 47074;47075;47076;47077 47075 655;1688 4 RVVPSDLYPLVLGFLR ______________________________ VVPSDLYPLVLGFLRDNQLSEVANKFAKAT R R V L R D 0 2 0 1 0 0 0 1 0 0 4 0 0 1 2 1 0 0 1 3 0 0 16 1 1843.072 B2RAU8;A0A0A0MRM9;Q14978;S4R349;S4R402;S4R341 B2RAU8 8 23 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 3.8792E-05 71.08 2 1.0062 1.1196 4.9204 2 Median 1.0062 1.1196 4.9204 2 0 Median NaN NaN NaN 0 0 Median 70278000 35027000 35251000 70278000 35027000 35251000 0 0 0 11462 468 11773 30204;30205 47078;47079 47079 2 RVVVPELSAGVASR RSEIATERDLVAWSRRVVVPELSAGVASRQ RRVVVPELSAGVASRQEEWRTAKGEEEIKT R R V S R Q 2 2 0 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 4 0 0 14 1 1438.8256 Q8WWQ0 Q8WWQ0 722 735 PHIP PH-interacting protein yes yes 3 2.0858E-05 71.08 2 2 1.022 0.98507 26.486 4 Median 0.72909 0.81015 1.1163 2 0 Median 1.4469 1.2693 9.326 2 0 Median 94550000 50479000 44071000 73623000 41862000 31760000 20927000 8616200 12311000 11463 1942 11774 30206;30207;30208;30209 47080;47081;47082;47083;47084;47085;47086 47081 6 RVVYPLEK AQWLYDNHKDESYLRRVVYPLEKLLTSHKR KDESYLRRVVYPLEKLLTSHKRLVMKDSAV R R V E K L 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 8 1 1002.5862 O60832;C9IYT0;H7C2Q2 O60832 284 291 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.03312 58.917 2 1 0.7672 0.92362 24.818 3 Plateau 0.7672 0.91338 7.5899 2 0 Median 0.70958 0.60032 NaN 1 0 Median 195420000 108360000 87067000 184260000 101710000 82546000 11163000 6642500 4520400 11464 1398 11775 30210;30211;30212 47087;47088;47089;47090 47087 4 RVYLTTQLK SGVSKKVEPSDPVARRVYLTTQLKQKKSTL SDPVARRVYLTTQLKQKKSTLASVNIQALP R R V L K Q 0 1 0 0 0 1 0 0 0 0 2 1 0 0 0 0 2 0 1 1 0 0 9 1 1120.6604 A0A024R0F1;Q9UNY4 A0A024R0F1 414 422 TTF2 Transcription termination factor 2 yes no 2 0.057308 44.349 1 1.7 1.4221 NaN 1 Median NaN NaN NaN 0 0 Median 1.7 1.4221 NaN 1 0 Median 3432700 1382100 2050700 0 0 0 3432700 1382100 2050700 11465 44 11776 30213 47091 47091 1 RWQLSVATEQPELEGPR TASVTEIQEKWHDSRRWQLSVATEQPELEG QLSVATEQPELEGPREGYGGFRGQREGSRG R R W P R E 1 2 0 0 0 2 3 1 0 0 2 0 0 0 2 1 1 1 0 1 0 0 17 1 1995.0174 Q9NR30;Q8NI92 Q9NR30 702 718 DDX21;OK/SW-cl.65 Nucleolar RNA helicase 2 yes no 3 0.00342 29.422 1 1.2551 1.1382 NaN 1 Median NaN NaN NaN 0 0 Median 1.2551 1.1382 NaN 1 0 Median 5508000 2506900 3001100 0 0 0 5508000 2506900 3001100 11466 2065 11777 30214 47092 47092 1 RYAICSALAASALPALVMSK KTWRRWHRRVNTTQKRYAICSALAASALPA SALAASALPALVMSKGHRIEEVPELPLVVE K R Y S K G 6 1 0 0 1 0 0 0 0 1 3 1 1 0 1 3 0 0 1 1 0 0 20 1 2092.1173 P36578;Q59GY2;B4DMJ6;H3BM89;B4DFI6;B4DMJ2;H3BTP7 P36578 121 140 RPL4 60S ribosomal protein L4 yes no 3 1.6572E-06 55.988 1 3 0.78233 0.74006 37.011 4 Median 0.95334 1.0571 NaN 1 0 Median 0.642 0.54625 35.423 3 0 Median 72619000 42367000 30252000 9542500 4663800 4878700 63077000 37703000 25373000 11467 1548 11778;11779 30215;30216;30217;30218 47093;47094;47095;47096;47097;47098 47098 1305 6 RYASGSSASLGGPESAVA MTFSSSSYSSSGYGRRYASGSSASLGGPES SGSSASLGGPESAVA_______________ R R Y V A - 4 1 0 0 0 0 1 3 0 0 1 0 0 0 1 5 0 0 1 1 0 0 18 1 1665.7958 Q15149;D3DWL0;Q96IE3 Q15149 4667 4684 PLEC;PLEC1 Plectin yes no 2 0.052145 29.638 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7262100 0 7262100 7262100 0 7262100 0 0 0 11468 1754 11780 30219 47099 47099 1 RYAVPSAGLR FNFVLKAIRPQIDLKRYAVPSAGLRLFALH QIDLKRYAVPSAGLRLFALHASQFSTCLLD K R Y L R L 2 2 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 10 1 1088.6091 P78527;B4DL41 P78527 264 273 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0071234 61.765 1 0.64384 0.7512 NaN 1 Median 0.64384 0.7512 NaN 1 0 Median NaN NaN NaN 0 0 Median 101040000 64644000 36391000 101040000 64644000 36391000 0 0 0 11469 1665 11781 30220 47100 47100 1 RYDDPEVQK NPNNTFYATKRLIGRRYDDPEVQKDIKNVP KRLIGRRYDDPEVQKDIKNVPFKIVRASNG R R Y Q K D 0 1 0 2 0 1 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 9 1 1148.5462 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;D6RJI2 B7Z4V2 113 121 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0063448 70.908 1 1.4379 1.2117 NaN 1 Median NaN NaN NaN 0 0 Median 1.4379 1.2117 NaN 1 0 Median 7518100 3366900 4151200 0 0 0 7518100 3366900 4151200 11470 1092 11782 30221 47101 47101 1 RYDQDLCYTDILFTEQER FVDCLIEQTHPEIRKRYDQDLCYTDILFTE QDLCYTDILFTEQERGVGIKSTPVTVVLPD K R Y E R G 0 2 0 3 1 2 2 0 0 1 2 0 0 1 0 0 2 0 2 0 0 0 18 1 2364.0692 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 111 128 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.046339 22.985 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1064300 0 1064300 0 0 0 1064300 0 1064300 11471 794 11783 30222 47102 47102 1 RYDYCDIPECEDK NDENGPWCYTTDPDKRYDYCDIPECEDKCM DKRYDYCDIPECEDKCMHCSGENYEGKIAK K R Y D K C 0 1 0 3 2 0 2 0 0 1 0 1 0 0 1 0 0 0 2 0 0 0 13 1 1761.6974 CON__P06868 CON__P06868 179 191 yes yes 3 0.033605 32.275 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6040100 6040100 0 6040100 6040100 0 0 0 0 + 11472 1157 11784 30223 47103 47103 1 RYEDQELTGK ERREKEMLERLEKQKRYEDQELTGKNLPAF LEKQKRYEDQELTGKNLPAFRLVDTPEGLP K R Y G K N 0 1 0 1 0 1 2 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 10 1 1237.5939 Q9UIG0 Q9UIG0 579 588 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.837E-30 167.09 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80234000 0 80234000 80234000 0 80234000 0 0 0 11473 2103 11785 30224 47104 47104 1 RYELPAPSSGQK ERLAARQPIELLSMKRYELPAPSSGQKNDI SMKRYELPAPSSGQKNDITAWQECVNNSMA K R Y Q K N 1 1 0 0 0 1 1 1 0 0 1 1 0 0 2 2 0 0 1 0 0 0 12 1 1331.6834 Q53HE3;B2R7W3;O75934 Q53HE3 86 97 BCAS2 Pre-mRNA-splicing factor SPF27 yes no 2 0.0043853 58.132 1 1.7719 1.9719 NaN 1 Median 1.7719 1.9719 NaN 1 0 Median NaN NaN NaN 0 0 Median 10764000 3815700 6948700 10764000 3815700 6948700 0 0 0 11474 854 11786 30225 47105;47106 47105 2 RYESHPVCADLQAK EQYQKAAEEVEAKFKRYESHPVCADLQAKI KRYESHPVCADLQAKILQCYRENTHQTLKC K R Y A K I 2 1 0 1 1 1 1 0 1 0 1 1 0 0 1 1 0 0 1 1 0 0 14 1 1672.7991 A4D1N4;C9JRZ6;Q9NX63 A4D1N4 176 189 CHCHD3 MICOS complex subunit MIC19 yes no 3 0.00055452 49.216 1 1.3167 1.4583 NaN 1 Median 1.3167 1.4583 NaN 1 0 Median NaN NaN NaN 0 0 Median 8230200 3870800 4359400 8230200 3870800 4359400 0 0 0 11475 664 11787 30226 47107 47107 1 RYETLVGTIGK DETVELDVSDEEMARRYETLVGTIGKKFAR EMARRYETLVGTIGKKFARKRDHANYEEDE R R Y G K K 0 1 0 0 0 0 1 2 0 1 1 1 0 0 0 0 2 0 1 1 0 0 11 1 1235.6874 H3BSB3;H3BNT4;Q53HB4;Q99547 H3BSB3 88 98 MPHOSPH6 M-phase phosphoprotein 6 yes no 2 0.0021829 68.536 1 0.63791 0.68245 NaN 1 Median 0.63791 0.68245 NaN 1 0 Median NaN NaN NaN 0 0 Median 12831000 5469000 7362200 12831000 5469000 7362200 0 0 0 11476 1300 11788 30227 47108;47109;47110 47109 3 RYLEGTSCIAGVLVPAK GRSTTQELMEDDRVKRYLEGTSCIAGVLVP LEGTSCIAGVLVPAKDQPGRQEKMSIYQAM K R Y A K D 2 1 0 0 1 0 1 2 0 1 2 1 0 0 1 1 1 0 1 2 0 0 17 1 1832.9819 A0A075B730;A0A087X1U6;P58107 A0A075B730 2193 2209 EPPK1 Epiplakin no no 3 0.0049022 40.349 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4292000 0 4292000 0 0 0 4292000 0 4292000 11477 397;1622 11789 30228;30229 47111;47112 47111 2 RYLTSFPIDDR VPSFGEAMAYFAMVKRYLTSFPIDDRVQSH AMVKRYLTSFPIDDRVQSHILHLEHDLVHV K R Y D R V 0 2 0 2 0 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 11 1 1381.699 P07199;Q71VN3 P07199 556 566 CENPB Major centromere autoantigen B yes no 3 0.0081789 29.303 1 1.6636 1.5085 NaN 1 Median NaN NaN NaN 0 0 Median 1.6636 1.5085 NaN 1 0 Median 2950100 1255000 1695100 0 0 0 2950100 1255000 1695100 11478 1450 11790 30230 47113 47113 1 RYTCGEAPDYDR IRLLLEFTDTSYEEKRYTCGEAPDYDRSQW EEKRYTCGEAPDYDRSQWLDVKFKLDLDFP K R Y D R S 1 2 0 2 1 0 1 1 0 0 0 0 0 0 1 0 1 0 2 0 0 0 12 1 1501.6256 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3 Q6FGJ9 36 47 GSTM3 Glutathione S-transferase Mu 3 yes no 2 0.0061808 55.401 1 2.3308 2.2922 NaN 1 Median 2.3308 2.2922 NaN 1 0 Median NaN NaN NaN 0 0 Median 5345100 1653700 3691300 5345100 1653700 3691300 0 0 0 11479 1503 11791 30231 47114 47114 1 RYWEEETVPTTAGASPGPPR PPKKDKLQTKRKKPRRYWEEETVPTTAGAS ETVPTTAGASPGPPRNKKNRELRPQRPKNA R R Y P R N 2 2 0 0 0 0 3 2 0 0 0 0 0 0 4 1 3 1 1 1 0 0 20 1 2200.0549 B0UZZ8;O15213;A8K9A1;A8K806 B0UZZ8 27 46 C6orf11;WDR46 WD repeat-containing protein 46 yes no 3 1.0185E-06 46.578 1 2 1.2958 1.101 32.781 3 Median 0.62762 0.68796 NaN 1 0 Median 1.357 1.193 11.352 2 0 Median 27384000 12439000 14945000 12683000 6805800 5877400 14701000 5633200 9067700 11480 809 11792 30232;30233;30234 47115;47116;47117;47118;47119;47120;47121 47118 7 SAAEIVQEIENIEK FVHMYNAQRDALHPKSAAEIVQEIENIEKT KSAAEIVQEIENIEKTRMRLEASKLNESVM K S A E K T 2 0 1 0 0 1 4 0 0 3 0 1 0 0 0 1 0 0 0 1 0 0 14 0 1571.8043 Q53H10;A0A024R2I7 Q53H10 296 309 RAD18 yes no 2 0.0002188 66.663 1 1.4594 1.4696 NaN 1 Median 1.4594 1.4696 NaN 1 0 Median NaN NaN NaN 0 0 Median 5345700 2311700 3034000 5345700 2311700 3034000 0 0 0 11481 113 11793 30235 47122 47122 1 SAAEMYGSSFDLDYDFQR AAEPKVNRGKAGVKRSAAEMYGSSFDLDYD EMYGSSFDLDYDFQRDYYDRMYSYPARVPP R S A Q R D 2 1 0 3 0 1 1 1 0 0 1 0 1 2 0 3 0 0 2 0 0 0 18 0 2100.8735 G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V2D6;G3V5X6;G3V3K6;G3V251 G3V4W0 100 117 HNRNPC yes no 2 1.0515E-16 116.51 2 2 0.72971 1.4984 82.602 4 Linear 1.2668 1.4298 1.0819 2 0 Median 0.40186 0.34296 9.2317 2 0 Median 140320000 63713000 76605000 130670000 57319000 73354000 9645100 6394500 3250600 11482 837 11794 30236;30237;30238;30239 47123;47124;47125;47126;47127;47128;47129;47130;47131;47132 47129 665 10 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR AAEPKVNRGKAGVKRSAAEMYGSVTEHPSP PLLSSSFDLDYDFQRDYYDRMYSYPARVPP R S A Q R D 2 1 0 3 0 1 2 1 1 0 3 0 1 2 3 7 1 0 2 1 0 0 31 0 3432.5456 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V555;G3V575 G3V576 100 130 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 3 4.7043E-08 45.137 1 1.489 1.55 NaN 1 Median 1.489 1.55 NaN 1 0 Median NaN NaN NaN 0 0 Median 21111000 8484200 12627000 21111000 8484200 12627000 0 0 0 11483 781 11795 30240 47133 47133 615 1 SAAGYPDYYCK QYQIVERIIAHSNQKSAAGYPDYYCKWQGL SNQKSAAGYPDYYCKWQGLPYSECSWEDGA K S A C K W 2 0 0 1 1 0 0 1 0 0 0 1 0 0 1 1 0 0 3 0 0 0 11 0 1293.5336 O14646 O14646 402 412 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 7.1644E-08 108.43 2 1 0.82737 0.69484 NaN 1 Median NaN NaN NaN 0 0 Median 0.82737 0.69484 NaN 1 0 Median 11862000 10870000 991710 9696300 9696300 0 2165400 1173700 991710 11484 1366 11796 30241;30242;30243 47134;47135;47136 47135 3 SAALPIFSSFVSNWDEATK EKWESVKLLFVKTEKSAALPIFSSFVSNWD PIFSSFVSNWDEATKRSLLNKKKKEARRKR K S A T K R 3 0 1 1 0 0 1 0 0 1 1 1 0 2 1 4 1 1 0 1 0 0 19 0 2069.0106 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9 O76021 258 276 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 5.4213E-282 315.21 2 2 0.61916 0.64747 3.935 4 Median 0.54472 0.64747 2.8072 2 0 Median 0.73051 0.63701 5.9931 2 0 Median 2391500000 1521100000 870450000 1926500000 1252700000 673740000 465020000 268310000 196710000 11485 1415 11797 30244;30245;30246;30247 47137;47138;47139;47140;47141;47142;47143;47144 47137 8 SAALPIFSSFVSNWDEATKR EKWESVKLLFVKTEKSAALPIFSSFVSNWD IFSSFVSNWDEATKRSLLNKKKKEARRKRR K S A K R S 3 1 1 1 0 0 1 0 0 1 1 1 0 2 1 4 1 1 0 1 0 0 20 1 2225.1117 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9 O76021 258 277 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 0.030189 14.46 1 0.48103 0.52833 NaN 1 Median 0.48103 0.52833 NaN 1 0 Median NaN NaN NaN 0 0 Median 4948700 2267200 2681600 4948700 2267200 2681600 0 0 0 11486 1415 11798 30248 47145 47145 1 SAAPSTLDSSSTAPAQLGK QQQLEKELNTLRVTRSAAPSTLDSSSTAPA STLDSSSTAPAQLGKKGKEFEFSQLPLKVE R S A G K K 4 0 0 1 0 1 0 1 0 0 2 1 0 0 2 5 2 0 0 0 0 0 19 0 1787.8901 Q549N5;Q9Y5M8;H7C4H2 Q549N5 209 227 SRPRB Signal recognition particle receptor subunit beta yes no 2 2.1729E-23 136.83 2 2 1.2647 1.162 13.119 4 Median 1.1985 1.3121 5.2156 2 0 Median 1.31 1.0528 1.9934 2 0 Median 94323000 40420000 53903000 84011000 35875000 48136000 10312000 4544200 5767600 11487 1794 11799 30249;30250;30251;30252 47146;47147;47148;47149;47150;47151;47152;47153;47154 47150 9 SAAQVCLCLGQLER TPRIRVWRQTLERCRSAAQVCLCLGQLERS RSAAQVCLCLGQLERSIAWEKSVNKVTCLV R S A E R S 2 1 0 0 2 2 1 1 0 0 3 0 0 0 0 1 0 0 0 1 0 0 14 0 1603.781 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1621 1634 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.00086228 57.802 1 2 1.8625 1.5855 5.798 2 Median NaN NaN NaN 0 0 Median 1.8625 1.5855 5.798 2 0 Median 11154000 6588000 4566200 4622200 4622200 0 6532000 1965800 4566200 11488 1260 11800 30253;30254;30255 47155;47156;47157;47158 47156 4 SAATLITHPFHVITLR FDHVIKETTREMIARSAATLITHPFHVITL AATLITHPFHVITLRSMVQFIGRESKYCGL R S A L R S 2 1 0 0 0 0 0 0 2 2 2 0 0 1 1 1 3 0 0 1 0 0 16 0 1776.0046 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 132 147 MTCH2 Mitochondrial carrier homolog 2 yes no 3 2.4666E-07 97.579 1 1 1.2422 1.1248 10.92 2 Median 1.0313 1.0412 NaN 1 0 Median 1.4963 1.2151 NaN 1 0 Median 15734000 6845600 8888400 5691300 3135200 2556100 10043000 3710400 6332300 11489 2152 11801 30256;30257 47159;47160;47161 47160 2 SAATSGAGSTTSGVVSGSLGSR EDPCTLRHTMEKVVRSAATSGAGSTTSGVV GSTTSGVVSGSLGSREINYILRVLGPAACR R S A S R E 3 1 0 0 0 0 0 5 0 0 1 0 0 0 0 7 3 0 0 2 0 0 22 0 1895.9185 Q5H924;A0A024R9Y3;A0A024R9U8;A0A024R9W5;Q7Z6Z7 Q5H924 877 898 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 1.3768E-07 61.265 2 2 0.81885 1.3045 42.815 4 Linear 1.0743 1.1076 1.5824 2 0 Median 0.60869 0.52825 3.8842 2 0 Median 21532000 8146500 13385000 18005000 5966600 12039000 3526400 2179900 1346600 11490 289 11802 30258;30259;30260;30261 47162;47163;47164;47165;47166 47162 5 SACQVTAGGSSQCYR LPRRGTQPVGSLELKSACQVTAGGSSQCYR SACQVTAGGSSQCYRGHTNQDHVHAVWKIT K S A Y R G 2 1 0 0 2 2 0 2 0 0 0 0 0 0 0 3 1 0 1 1 0 0 15 0 1630.6828 A0A024R0F1;Q9UNY4 A0A024R0F1 510 524 TTF2 Transcription termination factor 2 yes no 2 0.00016862 78.324 2 2 1.0502 0.96667 41.117 4 Median 0.67156 0.66863 4.5443 2 0 Median 1.6112 1.3609 0.78444 2 0 Median 28796000 13788000 15008000 16837000 9502200 7334900 11959000 4285900 7673300 11491 44 11803 30262;30263;30264;30265 47167;47168;47169;47170;47171;47172;47173 47170 7 SADESGQALLAAGHYASDEVR QEHKGEIDAHEDSFKSADESGQALLAAGHY QALLAAGHYASDEVREKLTVLSEERAALLE K S A V R E 5 1 0 2 0 1 2 2 1 0 2 0 0 0 0 3 0 0 1 1 0 0 21 0 2145.9927 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8 A0A0D9SF54 419 439 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.0018685 24.732 2 5.9144 5.0083 3.9208 2 Median NaN NaN NaN 0 0 Median 5.9144 5.0083 3.9208 2 0 Median 9432600 1774800 7657800 0 0 0 9432600 1774800 7657800 11492 523 11804 30266;30267 47174;47175 47175 2 SADFNPDFVFTEK PIVLGRRQKALGKNRSADFNPDFVFTEKEG NRSADFNPDFVFTEKEGTYDGSWALADVMS R S A E K E 1 0 1 2 0 0 1 0 0 0 0 1 0 3 1 1 1 0 0 1 0 0 13 0 1515.6882 B3GQE6;Q3MI07;A0A087WYH5;B7Z6D5;Q96GQ7 B3GQE6 48 60 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 8.1533E-06 102.4 2 2 0.96176 0.93645 4.131 4 Median 0.82424 0.92836 1.6188 2 0 Median 1.1492 0.97019 5.3989 2 0 Median 359580000 186460000 173120000 248530000 134250000 114280000 111050000 52212000 58838000 11493 899;1099 11805 30268;30269;30270;30271 47176;47177;47178;47179;47180;47181;47182;47183 47177 8 SADGSAPAGEGEGVTLQR AEEKEEAREKMLAAKSADGSAPAGEGEGVT GSAPAGEGEGVTLQRNITLLNGVAIIVGTI K S A Q R N 3 1 0 1 0 1 2 4 0 0 1 0 0 0 1 2 1 0 0 1 0 0 18 0 1700.7966 Q01650 Q01650 31 48 SLC7A5 Large neutral amino acids transporter small subunit 1 yes yes 2 1.5069E-09 89.43 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10900000 0 10900000 10900000 0 10900000 0 0 0 11494 1675 11806 30272;30273 47184;47185 47185 2 SADIALVAGGSR PFEEKVIQVRYDPCRSADIALVAGGSRKRW PCRSADIALVAGGSRKRWIIATENMQAGDT R S A S R K 3 1 0 1 0 0 0 2 0 1 1 0 0 0 0 2 0 0 0 1 0 0 12 0 1115.5935 C9IY40;Q5T653;B4DVE2 C9IY40 136 147 MRPL2 39S ribosomal protein L2, mitochondrial yes no 2 0.00070748 76.927 2 0.74625 0.73777 NaN 1 Median 0.74625 0.73777 NaN 1 0 Median NaN NaN NaN 0 0 Median 15183000 10301000 4881900 15183000 10301000 4881900 0 0 0 11495 1125 11807 30274;30275 47186;47187 47186 2 SAEFLLHMLK QAKQWGWTQGRWPKKSAEFLLHMLKNAESN RWPKKSAEFLLHMLKNAESNAELKGLDVDS K S A L K N 1 0 0 0 0 0 1 0 1 0 3 1 1 1 0 1 0 0 0 0 0 0 10 0 1187.6373 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 87 96 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 2.6323E-12 144.12 6 9 1.6581 1.7334 56.818 12 Linear 1.4931 1.6787 3.7412 3 0 Median 0.95692 0.77466 37.671 9 0 Median 525930000 256370000 269550000 288010000 125830000 162190000 237910000 130550000 107360000 11496 106 11808;11809 30276;30277;30278;30279;30280;30281;30282;30283;30284;30285;30286;30287;30288;30289;30290 47188;47189;47190;47191;47192;47193;47194;47195;47196;47197;47198;47199;47200;47201;47202;47203;47204;47205;47206;47207;47208;47209;47210;47211;47212;47213 47189 93 26 SAEHYTETALDEIR WDIQGKKFVAMKVVKSAEHYTETALDEIRL KSAEHYTETALDEIRLLKSVRNSDPNDPNR K S A I R L 2 1 0 1 0 0 3 0 1 1 1 0 0 0 0 1 2 0 1 0 0 0 14 0 1633.7584 Q96SB4;H3BLV9;A0A024RCU9;D6RBM8 Q96SB4 113 126 SRPK1 SRSF protein kinase 1 yes no 2 0.010784 50.95 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11497 1988 11810 30291 47214 47214 1 SAELPDAVGPIVQLQEK ______________________________ ELPDAVGPIVQLQEKLYVPVKEYPDL____ R S A E K L 2 0 0 1 0 2 2 1 0 1 2 1 0 0 2 1 0 0 0 2 0 0 17 0 1792.9571 F5GYT7;F5H5U6;F5H8C8;F5GXS8;F5GYM3;H0YG47;Q96PU8 F5GYT7 14 30 QKI Protein quaking yes no 2 0.0015172 57.802 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8504800 0 8504800 8504800 0 8504800 0 0 0 11498 1256 11811 30292;30293 47215;47216;47217;47218 47218 4 SAELVGTFVSPEVFLK ACTDEEAAVVQSCTRSAELVGTFVSPEVFL AELVGTFVSPEVFLKLILSTLKKTPSASGL R S A L K L 1 0 0 0 0 0 2 1 0 0 2 1 0 2 1 2 1 0 0 3 0 0 16 0 1721.924 Q86Y56;B3KU91;H0Y650 Q86Y56 423 438 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 9.2566E-05 76.522 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4378000 0 4378000 4378000 0 4378000 0 0 0 11499 1888 11812 30294 47219 47219 1 SAEPGTETPQVNLSDLK LISNSHTDHLMGCTKSAEPGTETPQVNLSD EPGTETPQVNLSDLKASTLVHKPQSDFTND K S A L K A 1 0 1 1 0 1 2 1 0 0 2 1 0 0 2 2 2 0 0 1 0 0 17 0 1784.8792 B2RWP5 B2RWP5 449 465 NSD1 Histone-lysine N-methyltransferase yes yes 2 2.9375E-08 92.856 4 1 2.405 1.9303 NaN 1 Median NaN NaN NaN 0 0 Median 2.405 1.9303 NaN 1 0 Median 8353000 4100500 4252500 5497800 3113700 2384100 2855200 986820 1868400 11500 898 11813 30295;30296;30297;30298;30299 47220;47221;47222;47223;47224 47220 5 SAFLQAFLGR SVLLCKVVGARGVGKSAFLQAFLGRGLGHQ RGVGKSAFLQAFLGRGLGHQDTREQPPGYA K S A G R G 2 1 0 0 0 1 0 1 0 0 2 0 0 2 0 1 0 0 0 0 0 0 10 0 1108.6029 Q8IXI1 Q8IXI1 430 439 RHOT2 Mitochondrial Rho GTPase 2 yes yes 2 0.0011282 75.738 2 1.2504 1.2845 10.097 2 Median 1.2504 1.2845 10.097 2 0 Median NaN NaN NaN 0 0 Median 11025000 5245800 5779500 11025000 5245800 5779500 0 0 0 11501 1893 11814 30300;30301 47225;47226;47227;47228 47225 4 SAGEEEDGPVLTDEQK QVEALPGPSLDQWHRSAGEEEDGPVLTDEQ AGEEEDGPVLTDEQKSRIQAMKPMTKEEWD R S A Q K S 1 0 0 2 0 1 4 2 0 0 1 1 0 0 1 1 1 0 0 1 0 0 16 0 1702.7534 F5GYV5;H7BZV4;B2RE15;A0A0C4DG62;F8WCT1;F5H7X4;Q8TEM4;Q66PJ3 F5GYV5 140 155 ARL6IP4;FLJ00169 ADP-ribosylation factor-like protein 6-interacting protein 4 yes no 2 2.6425E-18 136.7 2 2 0.61258 0.56015 33.931 4 Median 0.73655 0.75698 11.218 2 0 Median 0.53536 0.42698 7.0231 2 0 Median 33821000 19515000 14306000 28254000 15762000 12491000 5567800 3752700 1815100 11502 510 11815 30302;30303;30304;30305 47229;47230;47231;47232;47233;47234;47235;47236 47231 8 SAGGLMFNTGIGQHILK IGRRRGRQEQRRELKSAGGLMFNTGIGQHI GGLMFNTGIGQHILKNPLIINSIIDKAALR K S A L K N 1 0 1 0 0 1 0 4 1 2 2 1 1 1 0 1 1 0 0 0 0 0 17 0 1742.9138 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2;D6RCL3 A8K9K8 24 40 DIMT1 Probable dimethyladenosine transferase yes no 3 1.6831E-05 73.208 2 1.3587 1.4286 17.492 2 Median 1.3587 1.4286 17.492 2 0 Median NaN NaN NaN 0 0 Median 36339000 17171000 19168000 36339000 17171000 19168000 0 0 0 11503 786 11816 30306;30307 47237;47238 47238 627 2 SAGNAVWLNR TVPLITSTTGAKLGKSAGNAVWLNRDKTSP AKLGKSAGNAVWLNRDKTSPFELYQFFVRQ K S A N R D 2 1 2 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 10 0 1086.557 H0YHS6;Q9Y2Z4 H0YHS6 259 268 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 2 3.6334E-06 104.44 3 2.7914 2.8131 NaN 1 Median 2.7914 2.8131 NaN 1 0 Median NaN NaN NaN 0 0 Median 10606000 2524300 8081200 10606000 2524300 8081200 0 0 0 11504 1293 11817 30308;30309;30310 47239;47240;47241 47240 3 SAGQGEVLVYVEDPAGHQEEAK GNMVKKRAEFTVETRSAGQGEVLVYVEDPA LVYVEDPAGHQEEAKVTANNDKNRTFSVWY R S A A K V 3 0 0 1 0 2 4 3 1 0 1 1 0 0 1 1 0 0 1 3 0 0 22 0 2312.0921 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 310 331 FLNA Filamin-A yes no 3 1.4372E-09 77.045 2 1 2.2147 2.084 23.853 2 Median 1.6326 1.7605 NaN 1 0 Median 3.0043 2.4669 NaN 1 0 Median 71630000 15015000 56615000 62299000 12456000 49843000 9331200 2559800 6771500 11505 1504 11818 30311;30312;30313 47242;47243;47244;47245;47246 47244 5 SAGVQCFGPTAEAAQLESSK GPEAPLAAGIVGNLRSAGVQCFGPTAEAAQ CFGPTAEAAQLESSKRFAKEFMDRHGIPTA R S A S K R 4 0 0 0 1 2 2 2 0 0 1 1 0 1 1 3 1 0 0 1 0 0 20 0 2036.9473 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;C9JZG2;C9JKQ7 Q3B7A7 88 107 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 2.0225E-09 97.45 2 1 2.3418 2.4041 42.981 3 Median 2.4237 2.4331 1.6964 2 0 Median 1.4169 1.156 NaN 1 0 Median 54778000 16824000 37954000 48410000 14554000 33856000 6368000 2270300 4097700 11506 1507 11819 30314;30315;30316 47247;47248;47249;47250 47249 4 SAHFSTLAIK LLLSSIHFQCRRLDRSAHFSTLAIKQNPLL RRLDRSAHFSTLAIKQNPLLAEAYSNLGNV R S A I K Q 2 0 0 0 0 0 0 0 1 1 1 1 0 1 0 2 1 0 0 0 0 0 10 0 1073.5869 C9JZL3;Q9H5T3;B4DTL6;O15294 C9JZL3 57 66 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 2 0.0037219 63.227 1 1.425 1.4874 NaN 1 Median 1.425 1.4874 NaN 1 0 Median NaN NaN NaN 0 0 Median 15018000 6308400 8709500 15018000 6308400 8709500 0 0 0 11507 1034 11820 30317 47251 47251 1 SAHIQASGHLEEQTPR TIARGRSHGARSVGRSAHIQASGHLEEQTP AHIQASGHLEEQTPRTLLKNILLTAPESSI R S A P R T 2 1 0 0 0 2 2 1 2 1 1 0 0 0 1 2 1 0 0 0 0 0 16 0 1759.8602 H3BTR4;B3KPB2;Q96BT3;H3BUW2;A8K662;H3BQJ0;I3L4F8 H3BTR4 72 87 CENPT Centromere protein T yes no 3 6.4494E-09 100.77 1 2 1.3072 1.1076 21.295 3 Median 0.82639 0.82298 NaN 1 0 Median 1.3677 1.1736 8.1924 2 0 Median 22033000 11623000 10410000 16460000 9849500 6610100 5573400 1773300 3800200 11508 920 11821 30318;30319;30320 47252;47253;47254;47255 47253 4 SAHLQWMVVR ______________________________ ______________________________ M S A V R N 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 0 2 0 0 10 0 1225.639 P46779;H0YKD8;H0YLP6;H0YMF4 P46779 2 11 RPL28 60S ribosomal protein L28 yes no 2 1.3665E-09 128.86 3 6 0.96624 0.8316 42.24 8 Median 1.1507 1.3407 0.57039 2 0 Median 0.95871 0.80777 32.692 6 0 Median 549660000 267940000 281730000 472090000 224510000 247580000 77572000 43426000 34145000 11509 1572 11822;11823 30321;30322;30323;30324;30325;30326;30327;30328;30329 47256;47257;47258;47259;47260;47261;47262;47263;47264;47265;47266;47267;47268;47269 47258 1353 14 SAHTLGPTPSR SSGSEEDGEGPQGAKSAHTLGPTPSRTETL QGAKSAHTLGPTPSRTETLVEETAAESSED K S A S R T 1 1 0 0 0 0 0 1 1 0 1 0 0 0 2 2 2 0 0 0 0 0 11 0 1122.5782 Q13428 Q13428 1168 1178 TCOF1 Treacle protein no no 3 0.021717 23.028 1 1.0286 1.0422 NaN 1 Median 1.0286 1.0422 NaN 1 0 Median NaN NaN NaN 0 0 Median 20140000 9776600 10363000 20140000 9776600 10363000 0 0 0 11510 1712 11824 30330 47270 47270 1 SAHTLVGPTPSR SSGSEEDGEGPQGAKSAHTLVGPTPSRTET GAKSAHTLVGPTPSRTETLVEETAAESSED K S A S R T 1 1 0 0 0 0 0 1 1 0 1 0 0 0 2 2 2 0 0 1 0 0 12 0 1221.6466 E7ETY2 E7ETY2 1167 1178 TCOF1 yes yes 2;3 3.5535E-06 111.06 3 2 1.2211 1.1935 45.03 4 Median 0.72297 0.77325 25.04 2 0 Median 1.9037 1.6141 6.3447 2 0 Median 110450000 57905000 52549000 104370000 55931000 48439000 6084900 1974500 4110400 11511 1225 11825 30331;30332;30333;30334;30335 47271;47272;47273;47274;47275;47276;47277;47278 47271 8 SAHVTVSGGTPK DNEHKRSLTKTPARKSAHVTVSGGTPKGEA ARKSAHVTVSGGTPKGEAVLGTHKLKTITG K S A P K G 1 0 0 0 0 0 0 2 1 0 0 1 0 0 1 2 2 0 0 2 0 0 12 0 1139.5935 Q9BXS6;A8K4B4 Q9BXS6 305 316 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 8.9107E-18 141.1 2 1 0.31954 0.29842 31.909 2 Median 0.24007 0.23814 NaN 1 0 Median 0.42533 0.37395 NaN 1 0 Median 13861000 11603000 2258300 12742000 10869000 1872500 1119700 733920 385800 11512 2014 11826 30336;30337;30338 47279;47280;47281 47279 3 SAIDENQLSR NEWFSKDIESHAENKSAIDENQLSRLHMIL HAENKSAIDENQLSRLHMILKPFMLRRIKK K S A S R L 1 1 1 1 0 1 1 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 10 0 1131.552 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 725 734 INOC1;INO80 DNA helicase INO80 yes no 2 0.001394 68.893 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11513 288 11827 30339 47282 47282 1 SAIDLTPIVVEDK TEPKGAADVEKVEEKSAIDLTPIVVEDKEE EKSAIDLTPIVVEDKEEKKEEEEKKEVMLQ K S A D K E 1 0 0 2 0 0 1 0 0 2 1 1 0 0 1 1 1 0 0 2 0 0 13 0 1398.7606 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1641 1653 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 3.8666E-09 121.36 2 2 1.1082 1.0724 23.995 4 Median 0.74764 0.87291 2.478 2 0 Median 1.6519 1.3205 2.7871 2 0 Median 630450000 350600000 279850000 588750000 335240000 253510000 41701000 15364000 26337000 11514 515 11828 30340;30341;30342;30343 47283;47284;47285;47286;47287;47288;47289;47290 47286 8 SAIDLTPIVVEDKEEK TEPKGAADVEKVEEKSAIDLTPIVVEDKEE AIDLTPIVVEDKEEKKEEEEKKEVMLQNGE K S A E K K 1 0 0 2 0 0 3 0 0 2 1 2 0 0 1 1 1 0 0 2 0 0 16 1 1784.9408 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1641 1656 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.0010401 41.695 1 2.3791 2.0131 NaN 1 Median NaN NaN NaN 0 0 Median 2.3791 2.0131 NaN 1 0 Median 14020000 4861500 9158600 0 0 0 14020000 4861500 9158600 11515 515 11829 30344 47291 47291 1 SAILQENSTLSASNK HLHLELQGGFNGVSRSAILQENSTLSASNK SAILQENSTLSASNKCCINGASTVVTAIFG R S A N K C 2 0 2 0 0 1 1 0 0 1 2 1 0 0 0 4 1 0 0 0 0 0 15 0 1561.7948 B3KMX7;Q498Y2;H0YLB7;H0YKU8;Q6JHV3;H0YMI4;Q9Y6I4;B4DWJ6;Q9Y2R8 B3KMX7 201 215 USP3 Ubiquitinyl hydrolase 1;Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 2 0.00022032 67.519 2 1 0.88829 0.88481 4.3282 2 Median 0.88829 0.88481 4.3282 2 0 Median NaN NaN NaN 0 0 Median 23881000 12643000 11237000 23881000 12643000 11237000 0 0 0 11516 910 11830 30345;30346;30347 47292;47293;47294 47293 3 SAINEVVTR ______________________________ ______________________________ R S A T R E 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 2 0 0 9 0 987.53491 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 3 11 RPL31 60S ribosomal protein L31 yes no 2 6.1013E-06 131.44 2 2 0.79017 0.80464 16.094 4 Median 0.77528 0.92248 2.6119 2 0 Median 0.80483 0.70004 2.9783 2 0 Median 4507200000 2443900000 2063400000 4200100000 2273600000 1926500000 307170000 170290000 136880000 11517 825 11831 30348;30349;30350;30351 47295;47296;47297;47298;47299;47300;47301;47302;47303 47296 9 SAIYQLEEEYENLLK YRWQLDKIKADLREKSAIYQLEEEYENLLK SAIYQLEEEYENLLKASFERMDHLRQLQNI K S A L K A 1 0 1 0 0 1 4 0 0 1 3 1 0 0 0 1 0 0 2 0 0 0 15 0 1840.9095 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 246 260 DSP;DSP variant protein Desmoplakin yes no 2 0.00022148 96.604 2 0.50554 0.52057 3.7381 2 Median 0.50554 0.52057 3.7381 2 0 Median NaN NaN NaN 0 0 Median 23757000 15990000 7766400 23757000 15990000 7766400 0 0 0 11518 1486 11832 30352;30353 47304;47305 47305 2 SALAFLNR MCDTSGSIQLSEEQKSALAFLNRGQPSSSN QLSEEQKSALAFLNRGQPSSSNAGNKRLST K S A N R G 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 890.4974 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VWX0;F8W0L1;F8VZ66;F8VV47;F8VVE5;F8VQZ5;F8VV37;F8W1E5;Q9BZ74;F8VYH6;F8W1T4;F8VQF5 B2RE34 123 130 RACGAP1;FKSG42 Rac GTPase-activating protein 1 yes no 2 0.019676 58.981 1 0.85595 0.85735 NaN 1 Median 0.85595 0.85735 NaN 1 0 Median NaN NaN NaN 0 0 Median 18636000 9412400 9223800 18636000 9412400 9223800 0 0 0 11519 68 11833 30354 47306;47307 47306 2 SALDEYRK QAQKLRNSAKGKVPKSALDEYRKRECRDHL AKGKVPKSALDEYRKRECRDHLRVNLKFLT K S A R K R 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 8 1 980.49271 A0A024R1T1;Q86WX3 A0A024R1T1 58 65 RPS19BP1 Active regulator of SIRT1 yes no 2 0.023269 64.265 1 1 1.3236 1.2622 26.034 2 Median 1.3707 1.5174 NaN 1 0 Median 1.278 1.05 NaN 1 0 Median 23910000 11202000 12708000 18892000 9133000 9758800 5018100 2069300 2948700 11520 87 11834 30355;30356 47308;47309 47308 2 SALEEFSK LASVVDPRVASAAAKSALEEFSKMKEEVPT VASAAAKSALEEFSKMKEEVPTALVEAHVR K S A S K M 1 0 0 0 0 0 2 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 8 0 909.44436 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 730 737 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.049746 50.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5836200 0 5836200 5836200 0 5836200 0 0 0 11521 321 11835 30357 47310 47310 1 SALFAQINQGESITHALK PPVSTSSGSDESASRSALFAQINQGESITH FAQINQGESITHALKHVSDDMKTHKNPALK R S A L K H 3 0 1 0 0 2 1 1 1 2 2 1 0 1 0 2 1 0 0 0 0 0 18 0 1927.0163 B4DNY3;B4DUZ8;B4DNW7;B4DNA3;B4DI38;D3DPU2;B2RDY9 B4DNY3 181 198 CAP1 Adenylyl cyclase-associated protein yes no 3 0.0002294 41.348 2 1.1181 0.87474 10.061 2 Median NaN NaN NaN 0 0 Median 1.1181 0.87474 10.061 2 0 Median 6623400 2799500 3823900 0 0 0 6623400 2799500 3823900 11522 893 11836 30358;30359 47311;47312;47313 47311 3 SALGFIK NVCLLLASRTRDVVKSALGFIKVAVTVMDV SRTRDVVKSALGFIKVAVTVMDVAHLAKHV K S A I K V 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 734.43268 B3KMR5;Q5JTH9;B3KY97 B3KMR5 961 967 RRP12 RRP12-like protein yes no 2 0.032919 64.776 2 1.3357 1.3637 0.28328 2 Median 1.3357 1.3637 0.28328 2 0 Median NaN NaN NaN 0 0 Median 40473000 17359000 23114000 40473000 17359000 23114000 0 0 0 11523 907 11837 30360;30361 47314;47315;47316 47314 3 SALHSSVPK PLIQEESDTIVSSSKSALHSSVPKSTNDRD IVSSSKSALHSSVPKSTNDRDATPLSRAMD K S A P K S 1 0 0 0 0 0 0 0 1 0 1 1 0 0 1 3 0 0 0 1 0 0 9 0 924.50288 E7ETD6;Q12830;F5GXF5 E7ETD6 1238 1246 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00085808 93.374 1 0.80337 0.78853 NaN 1 Median 0.80337 0.78853 NaN 1 0 Median NaN NaN NaN 0 0 Median 22957000 12327000 10630000 22957000 12327000 10630000 0 0 0 11524 1224 11838 30362 47317 47317 1 SALLDFYMK FCTSHKEMDVVSQHKSALLDFYMKNILMSK VVSQHKSALLDFYMKNILMSKVKPPKYLLD K S A M K N 1 0 0 1 0 0 0 0 0 0 2 1 1 1 0 1 0 0 1 0 0 0 9 0 1086.542 E1NZA1;Q92616;B4DM32 E1NZA1 221 229 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0018333 70.919 1 2.5011 2.501 NaN 1 Median 2.5011 2.501 NaN 1 0 Median NaN NaN NaN 0 0 Median 18812000 5002700 13809000 18812000 5002700 13809000 0 0 0 11525 1205 11839 30363 47318 47318 915 1 SALLDPDWVCPPCR FCGPCLRNRYGEDVRSALLDPDWVCPPCRG RSALLDPDWVCPPCRGICNCSYCRKRDGRC R S A C R G 1 1 0 2 2 0 0 0 0 0 2 0 0 0 3 1 0 1 0 1 0 0 14 0 1684.7701 A8K8X5;A0A024RA51;Q96GN5 A8K8X5 394 407 CDCA7L Cell division cycle-associated 7-like protein yes no 2 0.013821 48.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11526 295 11840 30364 47319 47319 1 SALQELEELK KFHRASVLFANEKYKSALQELEELKQIVPK NEKYKSALQELEELKQIVPKESLVYFLIGK K S A L K Q 1 0 0 0 0 1 3 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 10 0 1158.6132 B4DL80;G5EA36;P30260;I3L394 B4DL80 660 669 CDC27 Cell division cycle protein 27 homolog yes no 2 1.4776E-05 101.64 1 0.52945 0.56228 NaN 1 Median 0.52945 0.56228 NaN 1 0 Median NaN NaN NaN 0 0 Median 15808000 9111700 6696100 15808000 9111700 6696100 0 0 0 11527 995 11841 30365 47320 47320 1 SALQILFSEDSTK NISLKRVSKMPAFLRSALQILFSEDSTKLF LRSALQILFSEDSTKLFVASNQGALHIVQL R S A T K L 1 0 0 1 0 1 1 0 0 1 2 1 0 1 0 3 1 0 0 0 0 0 13 0 1437.7351 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YWK2;H3BRM8 Q969X6 439 451 CIRH1A Cirhin yes no 2 9.8454E-19 142.1 2 2 0.98813 0.965 3.3081 4 Median 0.84492 0.965 1.8269 2 0 Median 1.1867 0.9779 5.2658 2 0 Median 353150000 187340000 165810000 282250000 154960000 127290000 70899000 32385000 38515000 11528 1955 11842 30366;30367;30368;30369 47321;47322;47323;47324;47325;47326;47327;47328;47329;47330 47328 10 SALQTEIANLLK ______________________________ DEKSALQTEIANLLKEKEKLEFILAAHRPA K S A L K E 2 0 1 0 0 1 1 0 0 1 3 1 0 0 0 1 1 0 0 0 0 0 12 0 1299.7398 A0A0K0TMT7;A0A0K0TMT5;A0A0K0TMV9;G3V5N7;Q76MY9;G3V2V7;Q6FG41;P01100 A0A0K0TMT7 10 21 FOS Proto-oncogene c-Fos yes no 2 0.0043375 53.751 2 0.65444 0.65167 NaN 1 Median 0.65444 0.65167 NaN 1 0 Median NaN NaN NaN 0 0 Median 7613700 5429200 2184500 7613700 5429200 2184500 0 0 0 11529 540 11843 30370;30371 47331;47332 47332 2 SALQVLVSILK MLRRRIRDEKTNVRKSALQVLVSILKHCDV NVRKSALQVLVSILKHCDVSGMKEDLWILQ K S A L K H 1 0 0 0 0 1 0 0 0 1 3 1 0 0 0 2 0 0 0 2 0 0 11 0 1169.7384 P42695;G3V1A9;E9PKK4 P42695 560 570 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.00011828 96.342 2 0.94212 0.99622 0.38914 2 Median 0.94212 0.99622 0.38914 2 0 Median NaN NaN NaN 0 0 Median 39238000 20223000 19015000 39238000 20223000 19015000 0 0 0 11530 1565 11844 30372;30373 47333;47334;47335;47336;47337 47333 5 SALSCVISK LIAYYKENKDREDKRSALSCVISKTARLLS DREDKRSALSCVISKTARLLSSEDRARLPE R S A S K T 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 3 0 0 0 1 0 0 9 0 963.50592 Q9UIG0 Q9UIG0 493 501 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.024253 55.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11853000 0 11853000 11853000 0 11853000 0 0 0 11531 2103 11845 30374 47338 47338 1 SALSGHLETVILGLLK AYQRRTKKELASALKSALSGHLETVILGLL ALSGHLETVILGLLKTPAQYDASELKASMK K S A L K T 1 0 0 0 0 0 1 2 1 1 5 1 0 0 0 2 1 0 0 1 0 0 16 0 1649.9716 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YKS4;B4DNH8;H0YMM1;H0YM50;A6NMY6;H0YNP5;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YKL9 V9HW65 89 104 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2;3 6.4592E-45 163.8 4 1.1973 1.3216 20.113 4 Median 1.1973 1.3216 20.113 4 0 Median NaN NaN NaN 0 0 Median 138650000 64415000 74233000 138650000 64415000 74233000 0 0 0 11532 193 11846 30375;30376;30377;30378 47339;47340;47341;47342;47343;47344 47340 6 SALTVQFVQGIFVEK REYKLVVLGSGGVGKSALTVQFVQGIFVEK SALTVQFVQGIFVEKYDPTIEDSYRKQVEV K S A E K Y 1 0 0 0 0 2 1 1 0 1 1 1 0 2 0 1 1 0 0 3 0 0 15 0 1664.9138 A0A024RB87;P61224;F5H6R7;F5H004;F5GX62;Q9BXV4;E7ESV4;F5H7Y6;Q5U0C3;A8KAH9;P62834;F5H4H0;F5GYH7;F5H077;F5GWU8;F5H491;F5H0B7;F5H500;A0A075B6Q0;F5GYB5;A0A0J9YXB3;A6NIZ1;F8WBC0 A0A024RB87 17 31 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 2 0.018045 43.991 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5626400 0 5626400 5626400 0 5626400 0 0 0 11533 329 11847 30379 47345 47345 1 SANAEDAQEFSDVER ______________________________ SANAEDAQEFSDVERAIETLIKNFHQYSVE R S A E R A 3 1 1 2 0 1 3 0 0 0 0 0 0 1 0 2 0 0 0 1 0 0 15 0 1666.7071 Q9HCY8 Q9HCY8 6 20 S100A14 Protein S100-A14 yes yes 2 0.0012697 59.227 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11534 2054 11848 30380 47346 47346 1 SANNTPENSPNFPNFR FVELLSPRRKRRGRKSANNTPENSPNFPNF ANNTPENSPNFPNFRVIATKSSEQSRSVNI K S A F R V 1 1 5 0 0 0 1 0 0 0 0 0 0 2 3 2 1 0 0 0 0 0 16 0 1804.8129 D3DS96;Q9NRL2;Q59G54;B3KND8 D3DS96 1362 1377 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.04493 39.266 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11535 1187 11849 30381 47347 47347 1 SAPDTQERPPVR GKFGPARKSGSRQKKSAPDTQERPPVRATG QKKSAPDTQERPPVRATGARAKKAPQRAQD K S A V R A 1 2 0 1 0 1 1 0 0 0 0 0 0 0 3 1 1 0 0 1 0 0 12 1 1351.6844 Q8N884 Q8N884 64 75 MB21D1 Cyclic GMP-AMP synthase yes yes 2;3 7.3699E-13 112.71 4 3 1.4356 1.4498 9.7259 7 Median 1.3748 1.6713 7.1103 4 0 Linear 1.5748 1.2848 7.51 3 0 Plateau 659960000 273860000 386100000 577440000 240630000 336810000 82519000 33232000 49288000 11536 1914 11850 30382;30383;30384;30385;30386;30387;30388 47348;47349;47350;47351;47352;47353;47354;47355;47356;47357;47358;47359 47353 12 SAPFFIPTIPGLVPR IKKKNKPKEPPKVPKSAPFFIPTIPGLVPR SAPFFIPTIPGLVPRYAAPEQNNDPQQSKV K S A P R Y 1 1 0 0 0 0 0 1 0 2 1 0 0 2 4 1 1 0 0 1 0 0 15 0 1610.9184 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 730 744 WDR36 WD repeat-containing protein 36 yes no 2 4.0894E-05 86.463 2 2 1.1985 1.1975 6.9945 4 Median 0.9917 1.161 3.1977 2 0 Median 1.4663 1.2717 7.3307 2 0 Median 756070000 368620000 387450000 611190000 307040000 304140000 144880000 61578000 83302000 11537 486 11851 30389;30390;30391;30392 47360;47361;47362;47363;47364;47365;47366;47367 47361 8 SAPGGILDLNK VSLVYLTRKFMDLVRSAPGGILDLNKVATK DLVRSAPGGILDLNKVATKLGVRKRRVYDI R S A N K V 1 0 1 1 0 0 0 2 0 1 2 1 0 0 1 1 0 0 0 0 0 0 11 0 1083.5924 B7Z1I8;Q53YM3;Q53FX2;Q6Q9Z7;Q53F82;A0A0S2Z3K8;O75461 B7Z1I8 81 91 E2F6 Transcription factor E2F6 yes no 2 0.0066279 54.066 1 0.97498 1.0091 NaN 1 Median 0.97498 1.0091 NaN 1 0 Median NaN NaN NaN 0 0 Median 9768600 5276100 4492500 9768600 5276100 4492500 0 0 0 11538 552 11852 30393 47368 47368 1 SAPLEIGLQR GYLNGEASTSASIDRSAPLEIGLQRSTQVK ASIDRSAPLEIGLQRSTQVKRAADEVLAEA R S A Q R S 1 1 0 0 0 1 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1082.6084 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 111 120 CDC73 Parafibromin yes no 2 0.00033362 89.698 2 2 1.8531 1.6692 7.9225 4 Median 1.6746 1.7764 12.218 2 0 Median 1.955 1.6692 0.54313 2 0 Median 79568000 27132000 52436000 73886000 25172000 48713000 5681900 1959300 3722600 11539 1851 11853 30394;30395;30396;30397 47369;47370;47371;47372;47373;47374 47369 6 SAPTAPTPPPPPPPATPR PEENGNLGKIPVKTRSAPTAPTPPPPPPPA TAPTPPPPPPPATPRKNKAAMCKPLMQNRG R S A P R K 3 1 0 0 0 0 0 0 0 0 0 0 0 0 10 1 3 0 0 0 0 0 18 0 1747.9257 A6NHB5;Q14202;A6NHN7 A6NHB5 813 830 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 3.12E-05 65.563 2 0.74305 0.78393 2.3114 2 Median 0.74305 0.78393 2.3114 2 0 Median NaN NaN NaN 0 0 Median 38079000 23454000 14625000 38079000 23454000 14625000 0 0 0 11540 681 11854 30398;30399 47375;47376;47377 47377 3 SAPVMLTLSDSK YHPRDQNKVLVCPMKSAPVMLTLSDSKHVV PMKSAPVMLTLSDSKHVVLPVDDDSDLNVV K S A S K H 1 0 0 1 0 0 0 0 0 0 2 1 1 0 1 3 1 0 0 1 0 0 12 0 1247.6431 A0A024R9B5;B4DMM7;Q15291;B4DLF8 A0A024R9B5 130 141 RBBP5 Retinoblastoma-binding protein 5 yes no 2 0.0023601 52.391 1 0.93671 0.97893 NaN 1 Median 0.93671 0.97893 NaN 1 0 Median NaN NaN NaN 0 0 Median 19291000 10581000 8710500 19291000 10581000 8710500 0 0 0 11541 272 11855 30400 47378 47378 206 1 SAQAFTHLK WSQKCLQDNNWDYTRSAQAFTHLKAKGEIP NWDYTRSAQAFTHLKAKGEIPEVAFMK___ R S A L K A 2 0 0 0 0 1 0 0 1 0 1 1 0 1 0 1 1 0 0 0 0 0 9 0 1001.5294 Q9UBU9 Q9UBU9 599 607 NXF1 Nuclear RNA export factor 1 no no 2 0.011904 57.96 1 1.3563 1.4169 NaN 1 Median 1.3563 1.4169 NaN 1 0 Median NaN NaN NaN 0 0 Median 10921000 6086600 4834400 10921000 6086600 4834400 0 0 0 11542 2099 11856 30401 47379 47379 1 SAQFEHTLLVTDTGCEILTR TWPDGWTAVTRDGKRSAQFEHTLLVTDTGC HTLLVTDTGCEILTRRLDSARPHFMSQF__ R S A T R R 1 1 0 1 1 1 2 1 1 1 3 0 0 1 0 1 4 0 0 1 0 0 20 0 2290.1263 P53582;Q5CZ91;H0Y955;H0Y903 P53582 354 373 METAP1;DKFZp781C0419 Methionine aminopeptidase 1 yes no 3 4.9552E-05 40.158 2 0.519 0.43545 10.035 2 Median NaN NaN NaN 0 0 Median 0.519 0.43545 10.035 2 0 Median 16958000 9788100 7169900 0 0 0 16958000 9788100 7169900 11543 1605 11857 30402;30403 47380;47381;47382;47383 47382 4 SAQIADLQQK ITKQIESLETEMEFRSAQIADLQQKLLDAE EMEFRSAQIADLQQKLLDAESEDRPKQRWE R S A Q K L 2 0 0 1 0 3 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1100.5826 Q59HG1;O95239;B4DYE2;B3KNC0;Q2VIQ3 Q59HG1 834 843 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 1.536E-11 135.79 2 2 1.584 1.2718 15.155 3 Median 0.88923 0.98791 NaN 1 0 Median 1.5902 1.2838 1.3221 2 0 Median 106500000 69129000 37372000 88324000 62001000 26323000 18177000 7127800 11049000 11544 1803 11858 30404;30405;30406;30407 47384;47385;47386;47387;47388;47389 47384 6 SAQQEASADVATPK KTRTRGQRIQNVNVKSAQQEASADVATPKM KSAQQEASADVATPKMPGQSVRKKTRKAKE K S A P K M 4 0 0 1 0 2 1 0 0 0 0 1 0 0 1 2 1 0 0 1 0 0 14 0 1401.6736 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1753 1766 AHCTF1 Protein ELYS yes no 2 1.7779E-57 196.24 2 2 1.5354 1.4625 10.855 4 Median 1.1934 1.3395 7.3957 2 0 Median 1.9377 1.5772 5.6509 2 0 Median 207740000 88801000 118940000 156280000 71261000 85014000 51467000 17540000 33928000 11545 1945 11859 30408;30409;30410;30411 47390;47391;47392;47393;47394;47395;47396;47397 47392 8 SASAPAAEGEGTPTQPASEK ______________________________ AAEGEGTPTQPASEKEPEMPGPREESEEEE M S A E K E 5 0 0 0 0 1 3 2 0 0 0 1 0 0 3 3 2 0 0 0 0 0 20 0 1884.8701 P35659;B4DFG0 P35659 2 21 DEK Protein DEK yes no 2 7.7148E-18 122.97 2 1 0.66894 0.7218 2.1942 3 Median 0.65159 0.73303 2.8354 2 0 Median 0.86822 0.7218 NaN 1 0 Median 243840000 152250000 91595000 205820000 131800000 74015000 38026000 20445000 17581000 11546 1546 11860 30412;30413;30414 47398;47399;47400;47401;47402;47403 47399 6 SASLCAATLAAVLQR DCVATHRICQIVSTRSASLCAATLAAVLQR SASLCAATLAAVLQRIKENKGEERLRSTIG R S A Q R I 5 1 0 0 1 1 0 0 0 0 3 0 0 0 0 2 1 0 0 1 0 0 15 0 1530.8188 Q68E10;E9PB90;A8K2U2;P52789;Q53QX9 Q68E10 354 368 DKFZp686M1669;HK2 Hexokinase;Hexokinase-2 yes no 2 0.023377 29.936 1 2.3735 2.0742 NaN 1 Median NaN NaN NaN 0 0 Median 2.3735 2.0742 NaN 1 0 Median 1410600 443190 967420 0 0 0 1410600 443190 967420 11547 714 11861 30415 47404 47404 1 SASSNSAEAGGDTVTLDDILSLK LEAIVQKITSPNIRRSASSNSAEAGGDTVT AGGDTVTLDDILSLKSGPPEGGSVAVQDAD R S A L K S 3 0 1 3 0 0 1 2 0 1 3 1 0 0 0 5 2 0 0 1 0 0 23 0 2250.0863 W5ZR30;Q9UGU0 W5ZR30 1367 1389 TCF20 Transcription factor 20 yes no 2 1.4683E-05 45.618 2 2 1.7175 1.4061 24.274 3 Median 0.96842 0.95658 NaN 1 0 Median 1.8042 1.4513 4.4724 2 0 Median 26328000 15765000 10563000 15713000 11754000 3958600 10615000 4010900 6604400 11548 2100 11862 30416;30417;30418;30419 47405;47406;47407;47408 47407 4 SATIVADLSETTIQTPDGEER PERCGEGKGCVGGAKSATIVADLSETTIQT DLSETTIQTPDGEERLWGEAHSMVWDPSGE K S A E R L 2 1 0 2 0 1 3 1 0 2 1 0 0 0 1 2 4 0 0 1 0 0 21 0 2232.0758 B4DDU7;Q53HS1;Q9NRG9;F8VZ44;H3BU82 B4DDU7 341 361 AAAS Aladin yes no 2 0.019332 31.827 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2839200 2839200 0 2839200 2839200 0 0 0 0 11549 961 11863 30420 47409 47409 1 SATNLPQLK RFPRCTRIRDDKDWKSATNLPQLKELYQLS DDKDWKSATNLPQLKELYQLSKEKADFTVV K S A L K E 1 0 1 0 0 1 0 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 9 0 970.54475 P49916;B7Z6I3 P49916 818 826 LIG3 DNA ligase 3;DNA ligase yes no 2 0.015503 54.712 2 0.55456 0.57654 8.3572 2 Median 0.55456 0.57654 8.3572 2 0 Median NaN NaN NaN 0 0 Median 60582000 41306000 19276000 60582000 41306000 19276000 0 0 0 11550 1589 11864 30421;30422 47410;47411 47411 2 SAVCIADPLPTPSQEK LEEIKAACQCVEPIKSAVCIADPLPTPSQE AVCIADPLPTPSQEKSQTELPDEKIGKKRK K S A E K S 2 0 0 1 1 1 1 0 0 1 1 1 0 0 3 2 1 0 0 1 0 0 16 0 1711.8451 Q96F88;Q99575 Q96F88 355 370 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.00015482 71.176 2 1 0.29876 0.3087 25.983 3 Median 0.29494 0.30612 1.1848 2 0 Median 0.59984 0.47999 NaN 1 0 Median 48716000 34623000 14093000 41553000 30281000 11272000 7162600 4341700 2820900 11551 1965 11865 30423;30424;30425 47412;47413;47414;47415;47416;47417;47418;47419;47420 47412 9 SAVEDEGLK VSAKNALESYAFNMKSAVEDEGLKGKISEA YAFNMKSAVEDEGLKGKISEADKKKVLDKC K S A L K G 1 0 0 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 9 0 946.46074 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNX1;B4E1T6 A8K5I0 551 559 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 0.0018366 90.709 1 0.84966 0.95774 NaN 1 Median 0.84966 0.95774 NaN 1 0 Median NaN NaN NaN 0 0 Median 75904000 40615000 35289000 75904000 40615000 35289000 0 0 0 11552 533 11866 30426 47421;47422 47421 2 SAVLTALIVGLGGR GSNVNFVVGNNGSGKSAVLTALIVGLGGRA KSAVLTALIVGLGGRAVATNRGSSLKGFVK K S A G R A 2 1 0 0 0 0 0 3 0 1 3 0 0 0 0 1 1 0 0 2 0 0 14 0 1325.8031 Q96SB8;C9JMN1;A0A0A0MRY1 Q96SB8 83 96 SMC6 Structural maintenance of chromosomes protein 6 yes no 2 0.00036505 61.353 2 0.96033 1.036 5.4673 2 Median 0.96033 1.036 5.4673 2 0 Median NaN NaN NaN 0 0 Median 5580900 3126800 2454100 5580900 3126800 2454100 0 0 0 11553 1989 11867 30427;30428 47423;47424 47424 1 SAYGGPVGAGIR SLYGLGASRPRVAVRSAYGGPVGAGIREVT AVRSAYGGPVGAGIREVTINQSLLAPLRLD R S A I R E 2 1 0 0 0 0 0 4 0 1 0 0 0 0 1 1 0 0 1 1 0 0 12 0 1103.5724 CON__P08729;CON__Q9DCV7;CON__Q3KNV1;P08729 CON__Q3KNV1 53 64 KRT7 Keratin, type II cytoskeletal 7 no no 2 1.2879E-08 122.44 2 2 1.3056 1.5073 5.4484 2 Median 1.3056 1.5073 5.4484 2 0 Median NaN NaN NaN 0 0 Median 369220000 167620000 201600000 369220000 167620000 201600000 0 0 0 + 11554 1171;1158 11868 30429;30430;30431;30432 47425;47426;47427;47428;47429;47430 47428 6 SAYLHPQQFDCEPGVLGSK LSEDWKCVTYTSLYKSAYLHPQQFDCEPGV HPQQFDCEPGVLGSKGFTWGKVYWEVEVER K S A S K G 1 0 0 1 1 2 1 2 1 0 2 1 0 1 2 2 0 0 1 1 0 0 19 0 2131.9997 A0A024RCP3;Q12899 A0A024RCP3 343 361 TRIM26 Tripartite motif-containing protein 26 yes no 3 7.0653E-07 84.249 1 1 0.75498 0.6889 27.121 2 Median 0.77731 0.83453 NaN 1 0 Median 0.73329 0.56868 NaN 1 0 Median 24914000 13381000 11533000 21422000 11358000 10064000 3491200 2022300 1469000 11555 365 11869 30433;30434 47431;47432 47431 2 SAYNVYVAER KKKELTLLGKPKRPRSAYNVYVAERFQEAK PKRPRSAYNVYVAERFQEAKGDSPQEKLKT R S A E R F 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 2 2 0 0 10 0 1170.5669 H7BYN3;Q6LES8;E5KSX8;E5KSU5;Q00059 H7BYN3 142 151 TFAM Transcription factor A, mitochondrial yes no 2 3.5724E-08 118.71 1 1.185 1.313 NaN 1 Median 1.185 1.313 NaN 1 0 Median NaN NaN NaN 0 0 Median 64251000 31469000 32783000 64251000 31469000 32783000 0 0 0 11556 1209 11870 30435 47433;47434 47433 2 SCDGNQELLNFLR IHSIHLARKPNLGLKSCDGNQELLNFLRSD LKSCDGNQELLNFLRSDLIEVATRLQKGGL K S C L R S 0 1 2 1 1 1 1 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 13 0 1564.7304 Q9UIG0 Q9UIG0 1044 1056 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.6252E-48 178.54 2 2 22.078 18.877 NaN 1 Median NaN NaN NaN 0 0 Median 22.078 18.877 NaN 1 0 Median 122950000 1417800 121530000 39773000 0 39773000 83174000 1417800 81756000 11557 2103 11871 30436;30437;30438;30439 47435;47436;47437;47438;47439 47436 5 SCDLLLFLR AFCALFDCDRPVAQKSCDLLLFLRDKIASY RPVAQKSCDLLLFLRDKIASYSSLREARGS K S C L R D 0 1 0 1 1 0 0 0 0 0 4 0 0 1 0 1 0 0 0 0 0 0 9 0 1135.606 Q6PJG6 Q6PJG6 719 727 BRAT1 BRCA1-associated ATM activator 1 yes yes 2 0.0055468 74.127 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1315100 0 1315100 1315100 0 1315100 0 0 0 11558 1856 11872 30440;30441 47440;47441 47441 2 SCDPGLEDPCGLNR SDVDAFIAYVGTDQKSCDPGLEDPCGLNRA KSCDPGLEDPCGLNRARMSFCVYSILGVVK K S C N R A 0 1 1 2 2 0 1 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 14 0 1588.661 A8K5Y7;Q9HAV4;B3KPQ5;Q9H8N6;B3KNC6;H0Y3Q8 A8K5Y7 705 718 XPO5 Exportin-5 yes no 2 0.0085228 53.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5811700 0 5811700 5811700 0 5811700 0 0 0 11559 754 11873 30442 47442 47442 1 SCEGQNPELLPK ATSPVKSTTSITDAKSCEGQNPELLPKTPI DAKSCEGQNPELLPKTPISPLKTGVSKPIV K S C P K T 0 0 1 0 1 1 2 1 0 0 2 1 0 0 2 1 0 0 0 0 0 0 12 0 1370.65 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6 B4DSL6 185 196 ANLN Actin-binding protein anillin yes no 2 0.0068733 59.542 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3708200 0 3708200 3708200 0 3708200 0 0 0 11560 294 11874 30443 47443 47443 1 SCENLAPFNTALK GCSVTVPANVQRWMRSCENLAPFNTALKLL MRSCENLAPFNTALKLLK____________ R S C L K L 2 0 2 0 1 0 1 0 0 0 2 1 0 1 1 1 1 0 0 0 0 0 13 0 1463.7079 B2R7M3;A0A024QZY1;Q13155;A8MU58;F8W950 B2R7M3 305 317 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 2 0.000141 89.171 2 0.88689 0.71115 3.1276 2 Median NaN NaN NaN 0 0 Median 0.88689 0.71115 3.1276 2 0 Median 5870300 2992000 2878400 0 0 0 5870300 2992000 2878400 11561 32 11875 30444;30445 47444;47445;47446;47447 47445 4 SCFEDPEWK ACLLLQKTLSMREVRSCFEDPEWKQLMGQV SMREVRSCFEDPEWKQLMGQVLAKVTENLR R S C W K Q 0 0 0 1 1 0 2 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 9 0 1196.4808 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1045 1053 MYBBP1A Myb-binding protein 1A yes no 2 0.010844 58.916 1 0.73348 0.7891 NaN 1 Median 0.73348 0.7891 NaN 1 0 Median NaN NaN NaN 0 0 Median 21579000 11696000 9883100 21579000 11696000 9883100 0 0 0 11562 1997 11876 30446 47448;47449 47449 2 SCFESSPDPELK TSPQANEQSVTPQRRSCFESSPDPELKSRT QRRSCFESSPDPELKSRTPSRHSCSGSSPP R S C L K S 0 0 0 1 1 0 2 0 0 0 1 1 0 1 2 3 0 0 0 0 0 0 12 0 1394.6024 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8 A0A140VK53 871 882 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 2 0.036989 34.773 1 1.0896 1.075 NaN 1 Median 1.0896 1.075 NaN 1 0 Median NaN NaN NaN 0 0 Median 9261600 5024600 4237000 9261600 5024600 4237000 0 0 0 11563 619 11877 30447 47450 47450 1 SCGSLLPELK RSGGLGGSHALLLLRSCGSLLPELKLEERT LLLLRSCGSLLPELKLEERTEFAHRIWDTL R S C L K L 0 0 0 0 1 0 1 1 0 0 3 1 0 0 1 2 0 0 0 0 0 0 10 0 1102.5692 E5KNY5;P42704;B4DSR0;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 129 138 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 3.738E-06 105.36 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17112000 0 17112000 17112000 0 17112000 0 0 0 11564 1207 11878 30448 47451 47451 1 SCGSSTPDEFPTDIPGTK YKLDDPSCPRPECYRSCGSSTPDEFPTDIP SSTPDEFPTDIPGTKGNFKLVRHVSFVDCP R S C T K G 0 0 0 2 1 0 1 2 0 1 0 1 0 1 3 3 3 0 0 0 0 0 18 0 1894.8255 P41091;H7BZU1 P41091 104 121 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes no 2 2.5324E-05 69.352 2 1.9506 2.0143 2.5377 2 Median 1.9506 2.0143 2.5377 2 0 Median NaN NaN NaN 0 0 Median 42116000 15521000 26595000 42116000 15521000 26595000 0 0 0 11565 1559 11879 30449;30450 47452;47453;47454;47455;47456 47453 5 SCMIVNVNPCASTYDETLHVAK KLTRVFQGFFTGRGRSCMIVNVNPCASTYD NPCASTYDETLHVAKFSAIASQLVHAPPMQ R S C A K F 2 0 2 1 2 0 1 0 1 1 1 1 1 0 1 2 2 0 1 3 0 0 22 0 2508.1447 O95235 O95235 478 499 KIF20A Kinesin-like protein KIF20A yes yes 3 4.7056E-06 52.483 1 2 1.2944 1.0413 4.5339 2 Median NaN NaN NaN 0 0 Median 1.2944 1.0413 4.5339 2 0 Median 16120000 10025000 6095100 5723200 5723200 0 10397000 4301800 6095100 11566 1421 11880;11881 30451;30452;30453 47457;47458;47459;47460 47459 1118 4 SCPVVQSSQHLFLDLPK INAVELKKPQCKVCRSCPVVQSSQHLFLDL PVVQSSQHLFLDLPKLEKRLEEWLGRTLPG R S C P K L 0 0 0 1 1 2 0 0 1 0 3 1 0 1 2 3 0 0 0 2 0 0 17 0 1953.9982 A8K492;P56192;B4DF61;B4E0E9 A8K492 440 456 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 3.3913E-05 58.98 2 3.0754 3.1115 NaN 1 Median 3.0754 3.1115 NaN 1 0 Median NaN NaN NaN 0 0 Median 46475000 6140100 40335000 46475000 6140100 40335000 0 0 0 11567 732 11882 30454;30455 47461;47462;47463 47462 3 SCSGVEFSTSGHAYTDTGK KGYGFGMVKIDLKTKSCSGVEFSTSGHAYT VEFSTSGHAYTDTGKASGNLETKYKVCNYG K S C G K A 1 0 0 1 1 0 1 3 1 0 0 1 0 1 0 4 3 0 1 1 0 0 19 0 1989.8374 Q9Y277;E5RJN6;E5RHZ6;E5RHE1 Q9Y277 35 53 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2;3 1.059E-12 107.72 4 1.5968 1.7408 4.4897 2 Median 1.5968 1.7408 4.4897 2 0 Median NaN NaN NaN 0 0 Median 92668000 28394000 64273000 92668000 28394000 64273000 0 0 0 11568 2124 11883 30456;30457;30458;30459 47464;47465;47466;47467 47466 4 SCSGVEFSTSGSSNTDTGK KGFGFGLVKLDVKTKSCSGVEFSTSGSSNT VEFSTSGSSNTDTGKVTGTLETKYKWCEYG K S C G K V 0 0 1 1 1 0 1 3 0 0 0 1 0 1 0 6 3 0 0 1 0 0 19 0 1906.7851 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;Q5JSD2;Q5JSD1;A2A3S1 A0A0A0MR02 46 64 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 3.1446E-159 253.15 3 2.291 2.6081 3.2429 2 Median 2.291 2.6081 3.2429 2 0 Median NaN NaN NaN 0 0 Median 251140000 80764000 170370000 251140000 80764000 170370000 0 0 0 11569 28 11884 30460;30461;30462 47468;47469;47470;47471;47472;47473 47473 6 SCTPSPDQISHR GSQEFLASASASAERSCTPSPDQISHRASL AERSCTPSPDQISHRASLEDAPVDDLTRKF R S C H R A 0 1 0 1 1 1 0 0 1 1 0 0 0 0 2 3 1 0 0 0 0 0 12 0 1383.6201 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 271 282 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.0063345 49.3 1 1.112 1.1224 NaN 1 Median 1.112 1.1224 NaN 1 0 Median NaN NaN NaN 0 0 Median 5814200 2956100 2858200 5814200 2956100 2858200 0 0 0 11570 1873 11885 30463 47474 47474 1 SCTVSINFGPCFK DIFEGVYFPAISLYKSCTVSINFGPCFKYP YKSCTVSINFGPCFKYPPKDLTYRPMSDMG K S C F K Y 0 0 1 0 2 0 0 1 0 1 0 1 0 2 1 2 1 0 0 1 0 0 13 0 1515.685 A8K6T5;Q9UBL3;F5H8F7;B4DPT1;H0YBF6;B4DEM3;H0YAQ0 A8K6T5 571 583 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.0051692 58.699 2 1.8567 1.4691 NaN 1 Median NaN NaN NaN 0 0 Median 1.8567 1.4691 NaN 1 0 Median 5079800 1195300 3884500 0 0 0 5079800 1195300 3884500 11571 763 11886 30464;30465 47475;47476 47475 2 SCVSVEWAEGGATK GLIHSANVRTVNLEKSCVSVEWAEGGATKG KSCVSVEWAEGGATKGKEIDFDDVAAINPE K S C T K G 2 0 0 0 1 0 2 2 0 0 0 1 0 0 0 2 1 1 0 2 0 0 14 0 1479.6664 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;Q5JR91;Q5JR89 A8K3S3 39 52 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.0022738 83.182 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7184200 7184200 0 7184200 7184200 0 0 0 0 11572 626 11887 30466 47477 47477 1 SDADSGFLGLRPTSVDPALR ______________________________ GFLGLRPTSVDPALRRRRRGPRNKKRGWRR K S D L R R 2 2 0 3 0 0 0 2 0 0 3 0 0 1 2 3 1 0 0 1 0 0 20 1 2073.0491 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4DVK1;B4E013 Q7L4X7 12 31 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 3 3.4646E-06 50.883 2 0.99925 0.87797 4.998 2 Median NaN NaN NaN 0 0 Median 0.99925 0.87797 4.998 2 0 Median 16524000 7896200 8627400 0 0 0 16524000 7896200 8627400 11573 1068 11888 30467;30468 47478;47479 47479 2 SDAEDGEGTVASWELR RKLRIFISNTFNPAKSDAEDGEGTVASWEL DAEDGEGTVASWELRVEGRLLEDSALSKYD K S D L R V 2 1 0 2 0 0 3 2 0 0 1 0 0 0 0 2 1 1 0 1 0 0 16 0 1720.754 A0A024R137;A0A024R102;Q96GM5;B4DF50 A0A024R137 319 334 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.0011588 64.65 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4742600 4742600 0 4742600 4742600 0 0 0 0 11574 65 11889 30469;30470;30471 47480;47481;47482 47480 3 SDAEEDGGTVSQEEEDR DEEEEGEEKLEEKQKSDAEEDGGTVSQEEE AEEDGGTVSQEEEDRKPKAEEDEILNRSPR K S D D R K 1 1 0 3 0 1 5 2 0 0 0 0 0 0 0 2 1 0 0 1 0 0 17 0 1851.7242 P27824 P27824 554 570 CANX Calnexin yes yes 2 4.7472E-09 97.551 2 1.0906 1.1659 NaN 1 Median 1.0906 1.1659 NaN 1 0 Median NaN NaN NaN 0 0 Median 6684400 1189200 5495100 6684400 1189200 5495100 0 0 0 11575 1526 11890 30472;30473 47483;47484;47485 47485 3 SDAEEDGGTVSQEEEDRKPK DEEEEGEEKLEEKQKSDAEEDGGTVSQEEE DGGTVSQEEEDRKPKAEEDEILNRSPRNRK K S D P K A 1 1 0 3 0 1 5 2 0 0 0 2 0 0 1 2 1 0 0 1 0 0 20 2 2204.9669 P27824 P27824 554 573 CANX Calnexin yes yes 3 7.9179E-13 104.89 2 2 1.1921 1.3623 54.02 4 Median 1.7512 2.1728 2.5989 2 0 Median 0.84948 0.8531 2.7764 2 0 Median 47729000 18205000 29524000 42658000 15468000 27190000 5070400 2736900 2333500 11576 1526 11891 30474;30475;30476;30477 47486;47487;47488;47489 47486 4 SDAGLESDTAMK ______________________________ KLRSDAGLESDTAMKKGETLRKQTEEKEKK R S D M K K 2 0 0 2 0 0 1 1 0 0 1 1 1 0 0 2 1 0 0 0 0 0 12 0 1223.534 Q9NR30;Q3SWU7 Q9NR30 7 18 DDX21 Nucleolar RNA helicase 2 yes no 2 0.017556 41.399 1 1.7417 1.4647 NaN 1 Median NaN NaN NaN 0 0 Median 1.7417 1.4647 NaN 1 0 Median 2147500 792280 1355200 0 0 0 2147500 792280 1355200 11577 2065 11892 30478 47490 47490 1 SDAPDSTGDQPGLHQDNSSNGK LNSSQSSTSEETVLRSDAPDSTGDQPGLHQ GDQPGLHQDNSSNGKSEWLDPSQKSPLHVG R S D G K S 1 0 2 4 0 2 0 3 1 0 1 1 0 0 2 4 1 0 0 0 0 0 22 0 2225.9421 A0A024R784;O15164;B4DYZ9 A0A024R784 746 767 TRIM24 Transcription intermediary factor 1-alpha yes no 3 0.00068323 31.917 1 0.60786 0.63731 NaN 1 Median 0.60786 0.63731 NaN 1 0 Median NaN NaN NaN 0 0 Median 4429800 2260100 2169600 4429800 2260100 2169600 0 0 0 11578 217 11893 30479 47491;47492 47491 2 SDAYYCTGDVTAWTK ALLPCEECSGQLVFKSDAYYCTGDVTAWTK SDAYYCTGDVTAWTKCMVKTQTPNRKEWVT K S D T K C 2 0 0 2 1 0 0 1 0 0 0 1 0 0 0 1 3 1 2 1 0 0 15 0 1736.7352 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 306 320 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.1682E-07 110.31 2 0.58134 0.64738 1.9198 2 Median 0.58134 0.64738 1.9198 2 0 Median NaN NaN NaN 0 0 Median 116090000 78277000 37815000 116090000 78277000 37815000 0 0 0 11579 139 11894 30480;30481 47493;47494;47495;47496 47493 4 SDCGVDCCCDPTK KGWCGNKQCGCRKQKSDCGVDCCCDPTKCR QKSDCGVDCCCDPTKCRNRQQGKDSLGTVE K S D T K C 0 0 0 3 4 0 0 1 0 0 0 1 0 0 1 1 1 0 0 1 0 0 13 0 1572.5313 Q59HG1;O95239;B3KNC0 Q59HG1 1107 1119 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 3.9382E-09 121.29 2 1 0.78995 0.83422 24.539 3 Median 0.77958 0.80229 5.5201 2 0 Median 1.5664 1.2206 NaN 1 0 Median 35440000 16564000 18877000 23187000 12008000 11179000 12253000 4555500 7697400 11580 1803 11895 30482;30483;30484 47497;47498;47499;47500;47501 47497 5 SDDDGFEIVPIEDPAK SWEPLRGKKRSRGPKSDDDGFEIVPIEDPA DDDGFEIVPIEDPAKHRILDPEGLALGAVI K S D A K H 1 0 0 4 0 0 2 1 0 2 0 1 0 1 2 1 0 0 0 1 0 0 16 0 1745.7996 Q8IY81;B4DKU3 Q8IY81 644 659 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 7.616E-25 145.31 2 2 1.0575 1.0421 3.4172 4 Linear 0.92608 1.0418 0.024662 2 0 Median 1.226 0.98318 1.2193 2 0 Median 186000000 97396000 88602000 153310000 82524000 70782000 32691000 14871000 17820000 11581 1898 11896 30485;30486;30487;30488 47502;47503;47504;47505;47506;47507;47508;47509;47510;47511;47512 47503 11 SDDILEEGEK LNKLKVVVDSKEKEKSDDILEEGEKNLGNI KEKEKSDDILEEGEKNLGNIKVTKMDANVL K S D E K N 0 0 0 2 0 0 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1133.5088 B4DXX1;B2R713;Q7Z2T5 B4DXX1 181 190 TRMT1L TRMT1-like protein yes no 2 2.8198E-05 99.688 1 1.6733 1.7589 NaN 1 Median 1.6733 1.7589 NaN 1 0 Median NaN NaN NaN 0 0 Median 19680000 8735500 10945000 19680000 8735500 10945000 0 0 0 11582 846 11897 30489 47513 47513 1 SDEEEQQYVIK LTDMNTHIHQVHKEKSDEEEQQYVIKCGTC HKEKSDEEEQQYVIKCGTCTKAFHDPESAQ K S D I K C 0 0 0 1 0 2 3 0 0 1 0 1 0 0 0 1 0 0 1 1 0 0 11 0 1366.6252 Q4KMR5;E9PH99;Q9Y4E5 Q4KMR5 780 790 ZNF451 Zinc finger protein 451 yes no 2 0.050997 55.064 1 0.666 0.67154 NaN 1 Median 0.666 0.67154 NaN 1 0 Median NaN NaN NaN 0 0 Median 10036000 4276300 5759700 10036000 4276300 5759700 0 0 0 11583 1236 11898 30490 47514 47514 0 SDFEFTLK IPRVIQLLFKEIDKKSDFEFTLKVSYLEIY FKEIDKKSDFEFTLKVSYLEIYNEEILDLL K S D L K V 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 0 0 0 8 0 985.47566 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 133 140 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0014375 109.01 2 0.85135 0.9431 0.41514 2 Median 0.85135 0.9431 0.41514 2 0 Median NaN NaN NaN 0 0 Median 110050000 58797000 51252000 110050000 58797000 51252000 0 0 0 11584 1803 11899 30491;30492 47515;47516;47517 47516 3 SDGDPIVDPEK EEKGKEGDSEKESEKSDGDPIVDPEKEKEP ESEKSDGDPIVDPEKEKEPKEGQEEVLKEV K S D E K E 0 0 0 3 0 0 1 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 11 0 1170.5404 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 848 858 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.00072394 88.495 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9332800 0 9332800 9332800 0 9332800 0 0 0 11585 321 11900 30493;30494 47518;47519 47518 2 SDGEMVLPGFPDADSFVK STREPRVLSATSATKSDGEMVLPGFPDADS EMVLPGFPDADSFVKFALGSVVAVTKASGG K S D V K F 1 0 0 3 0 0 1 2 0 0 1 1 1 2 2 2 0 0 0 2 0 0 18 0 1909.8768 Q01780;B4DKG8;B4DFE4;Q59G73;K7EJ37 Q01780 20 37 EXOSC10 Exosome component 10 yes no 2 0.00018189 53.967 2 2.0487 2.1468 NaN 1 Median 2.0487 2.1468 NaN 1 0 Median NaN NaN NaN 0 0 Median 18256000 4055200 14201000 18256000 4055200 14201000 0 0 0 11586 1676 11901 30495;30496 47520;47521;47522 47522 1474 3 SDGGYTYDTSDLAAIK IVFVPGCSIPLTIVKSDGGYTYDTSDLAAI DGGYTYDTSDLAAIKQRLFEEKADMIIYVV K S D I K Q 2 0 0 3 0 0 0 2 0 1 1 1 0 0 0 2 2 0 2 0 0 0 16 0 1675.7577 P54136;B4DXW6 P54136 378 393 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.0087908 34.241 1 0.8339 0.6832 NaN 1 Median NaN NaN NaN 0 0 Median 0.8339 0.6832 NaN 1 0 Median 4979600 2705900 2273700 0 0 0 4979600 2705900 2273700 11587 1609 11902 30497 47523 47523 1 SDGIYIINLK TNLDFQMEQYIYKRKSDGIYIINLKRTWEK IYKRKSDGIYIINLKRTWEKLLLAARAIVA K S D L K R 0 0 1 1 0 0 0 1 0 3 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1134.6285 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;Q96RS2;F8WD59 C9J9K3 43 52 RPSA;LOC388524 40S ribosomal protein SA yes no 2 0.00041837 87.181 2 1 1.9161 2.1526 3.7893 3 Median 1.882 2.1768 1.5795 2 0 Median 2.6001 2.0444 NaN 1 0 Median 457770000 152280000 305500000 446620000 149050000 297570000 11152000 3222000 7930000 11588 119 11903 30498;30499;30500 47524;47525;47526 47526 3 SDGPYALVLVPTR PVVQSLQAMESKIQRSDGPYALVLVPTREL QRSDGPYALVLVPTRELALQSFDTVQKLLK R S D T R E 1 1 0 1 0 0 0 1 0 0 2 0 0 0 2 1 1 0 1 2 0 0 13 0 1386.7507 B4DYZ1;F8WAJ0;Q9H8H2 B4DYZ1 174 186 DDX31 Probable ATP-dependent RNA helicase DDX31 no no 2 0.0022939 54.343 1 1.1231 0.95235 NaN 1 Median NaN NaN NaN 0 0 Median 1.1231 0.95235 NaN 1 0 Median 3072200 1471700 1600500 0 0 0 3072200 1471700 1600500 11589 1053;1268 11904 30501 47527;47528 47527 2 SDHPGISITDLSK SAYMLWLNASREKIKSDHPGISITDLSKKA IKSDHPGISITDLSKKAGEIWKGMSKEKKE K S D S K K 0 0 0 2 0 0 0 1 1 2 1 1 0 0 1 3 1 0 0 0 0 0 13 0 1368.6885 A0A024R4Z6;Q08945;A0A0U1RRK2 A0A024R4Z6 567 579 SSRP1 FACT complex subunit SSRP1 yes no 2;3 6.6973E-07 111.86 1 1 0.84821 0.81706 2.403 2 Median 0.7162 0.83107 NaN 1 0 Median 1.0046 0.8033 NaN 1 0 Median 230820000 132140000 98688000 221950000 127900000 94051000 8874000 4237300 4636700 11590 167 11905 30502;30503 47529;47530 47529 2 SDIASHFSNK RREIEKLAASLWLWKSDIASHFSNKRKKCV LWLWKSDIASHFSNKRKKCVRDCEKYKPGV K S D N K R 1 0 1 1 0 0 0 0 1 1 0 1 0 1 0 3 0 0 0 0 0 0 10 0 1104.52 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 798 807 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 3.4088E-30 177.58 2 2 0.64771 0.72881 40.892 3 Median 0.63929 0.71551 2.6037 2 0 Median 1.7726 1.4518 NaN 1 0 Median 140840000 88293000 52549000 132230000 85003000 47229000 8609800 3289800 5320000 11591 878 11906 30504;30505;30506;30507 47531;47532;47533;47534;47535;47536;47537;47538 47532 8 SDIDEIVLVGGSTR MKPVQKVLEDSDLKKSDIDEIVLVGGSTRI KSDIDEIVLVGGSTRIPKIQQLVKEFFNGK K S D T R I 0 1 0 2 0 0 1 2 0 2 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1459.7518 V9HWB4;P11021 V9HWB4 354 367 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.00097599 77.593 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11592 1466 11907 30508 47539 47539 1 SDIGEVILVGGMTR IAPCQKAMQDAEVSKSDIGEVILVGGMTRM KSDIGEVILVGGMTRMPKVQQTVQDLFGRA K S D T R M 0 1 0 1 0 0 1 3 0 2 1 0 1 0 0 1 1 0 0 2 0 0 14 0 1445.7548 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;A1XP52;H0YBG6 B7Z4V2 364 377 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.9196E-07 111.52 3 1 2.9166 3.2342 91.149 3 Plateau 2.8668 3.2314 0.11979 2 0 Median 0.77757 0.66642 NaN 1 0 Median 121030000 34554000 86479000 117710000 32708000 85001000 3324600 1846000 1478700 11593 1092 11908 30509;30510;30511;30512 47540;47541;47542;47543 47541 837 4 SDKPIFTLNAHNDEISGLDLSSQIK LASTDDGFVYNLDARSDKPIFTLNAHNDEI HNDEISGLDLSSQIKGCLVTASADKYVKIW R S D I K G 1 0 2 3 0 1 1 1 1 3 3 2 0 1 1 4 1 0 0 0 0 0 25 1 2741.3872 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 374 398 PWP1 Periodic tryptophan protein 1 homolog yes no 4 3.3248E-06 42.454 2 1.2879 1.0953 3.2528 2 Median NaN NaN NaN 0 0 Median 1.2879 1.0953 3.2528 2 0 Median 21089000 9131500 11957000 0 0 0 21089000 9131500 11957000 11594 339 11909 30513;30514 47544;47545;47546 47545 3 SDKTEEIAEEEETVFPK LRKQTEEKEKKEKPKSDKTEEIAEEEETVF KTEEIAEEEETVFPKAKQVKKKAEPSEVDM K S D P K A 1 0 0 1 0 0 6 0 0 1 0 2 0 1 1 1 2 0 0 1 0 0 17 1 1979.9211 Q9NR30;Q3SWU7 Q9NR30 38 54 DDX21 Nucleolar RNA helicase 2 yes no 2;3 2.3035E-09 103.88 1 3 1.4783 1.2716 5.0771 4 Median 1.1755 1.3984 NaN 1 0 Median 1.4977 1.2719 0.9207 3 0 Plateau 113170000 44931000 68237000 23284000 9104900 14179000 89884000 35826000 54058000 11595 2065 11910 30515;30516;30517;30518 47547;47548;47549;47550;47551;47552;47553 47553 7 SDLEMQYETLQEELMALK INGLRQVLDNLTMEKSDLEMQYETLQEELM EMQYETLQEELMALKKNHKEEMSQLTGQNS K S D L K K 1 0 0 1 0 2 4 0 0 0 4 1 2 0 0 1 1 0 1 0 0 0 18 0 2170.0174 CON__P35527;P35527;K7EQQ3 CON__P35527 272 289 KRT9 Keratin, type I cytoskeletal 9 yes no 2 2.7461E-24 127.02 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 234510000 234510000 0 180720000 180720000 0 53786000 53786000 0 + 11596 1165 11911 30519;30520;30521;30522;30523 47554;47555;47556;47557;47558;47559 47557 881;882 6 SDLEMQYETLQEELMALKK INGLRQVLDNLTMEKSDLEMQYETLQEELM MQYETLQEELMALKKNHKEEMSQLTGQNSG K S D K K N 1 0 0 1 0 2 4 0 0 0 4 2 2 0 0 1 1 0 1 0 0 0 19 1 2298.1123 CON__P35527;P35527;K7EQQ3 CON__P35527 272 290 KRT9 Keratin, type I cytoskeletal 9 yes no 3 6.836E-11 90.442 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39497000 39497000 0 30700000 30700000 0 8796900 8796900 0 + 11597 1165 11912;11913 30524;30525;30526;30527 47560;47561;47562;47563 47562 881;882 4 SDLGVHLR AKFHCPHCDTVIARKSDLGVHLRKQHSYIE DTVIARKSDLGVHLRKQHSYIEQGKKCRYC K S D L R K 0 1 0 1 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 1 0 0 8 0 895.48756 P49711 P49711 450 457 CTCF Transcriptional repressor CTCF yes yes 2 0.016916 60.788 1 0.38262 0.41787 NaN 1 Median 0.38262 0.41787 NaN 1 0 Median NaN NaN NaN 0 0 Median 38343000 24603000 13739000 38343000 24603000 13739000 0 0 0 11598 1585 11914 30528 47564 47564 1 SDLIEVATR LKSCDGNQELLNFLRSDLIEVATRLQKGGL LLNFLRSDLIEVATRLQKGGLGYVEETSEF R S D T R L 1 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1002.5346 Q9UIG0 Q9UIG0 1057 1065 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.010363 59.35 1 1 27.595 26.951 35.024 2 Median 30.117 34.525 NaN 1 0 Median 25.284 21.039 NaN 1 0 Median 98205000 3571200 94633000 82594000 2893900 79700000 15611000 677270 14933000 11599 2103 11915 30529;30530 47565;47566 47566 2 SDLSVIQR NPIKAEDVGYRSSSRSDLSVIQRNPKRITT GYRSSSRSDLSVIQRNPKRITTRHKKQLKK R S D Q R N 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 8 0 916.49779 Q9BVJ6;B4E343 Q9BVJ6 745 752 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.00060278 130.04 1 0.67671 0.74788 NaN 1 Median 0.67671 0.74788 NaN 1 0 Median NaN NaN NaN 0 0 Median 57268000 31849000 25419000 57268000 31849000 25419000 0 0 0 11600 2008 11916 30531 47567 47567 1 SDLTVDAVK RQAARSRFFSRPSGRSDLTVDAVKLHNELQ SRPSGRSDLTVDAVKLHNELQSGSLRLGKS R S D V K L 1 0 0 2 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 9 0 946.49713 B3KMR5;Q5JTH9;A0A087X1U8;H7C1M8 B3KMR5 49 57 RRP12 RRP12-like protein yes no 2 0.0010484 90.709 2 2 1.4922 1.3641 23.368 4 Median 1.5478 1.7176 18.377 2 0 Median 1.4922 1.2001 3.8955 2 0 Median 124170000 47938000 76233000 113190000 43820000 69375000 10977000 4118000 6858600 11601 907 11917 30532;30533;30534;30535 47568;47569;47570;47571;47572;47573 47571 6 SDMYILNESLTDPAIVK STRTEDFIIDTLELRSDMYILNESLTDPAI MYILNESLTDPAIVKVFHGADSDIEWLQKD R S D V K V 1 0 1 2 0 0 1 0 0 2 2 1 1 0 1 2 1 0 1 1 0 0 17 0 1907.955 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 347 363 EXOSC10 Exosome component 10 yes no 2 5.2175E-06 85.554 2 3 1.2876 1.0967 40.741 5 Median 1.3151 1.3678 2.8677 2 0 Median 1.2691 1.0626 43.469 3 0 Median 32842000 13108000 19734000 23543000 8615600 14928000 9299000 4492600 4806300 11602 1676 11918;11919 30536;30537;30538;30539;30540 47574;47575;47576;47577;47578;47579;47580 47577 1475 7 SDPDHLAELVK FFRPGKFAEFDQIMKSDPDHLAELVKRVNH QIMKSDPDHLAELVKRVNHWLTCSRWKKVQ K S D V K R 1 0 0 2 0 0 1 0 1 0 2 1 0 0 1 1 0 0 0 1 0 0 11 0 1222.6194 A0A0A0MRM8;A0A0D9SGC1;E7EW20;Q9UM54 A0A0A0MRM8 772 782 MYO6 Unconventional myosin-VI yes no 2 0.032634 37.556 1 1.5323 1.5563 NaN 1 Median 1.5323 1.5563 NaN 1 0 Median NaN NaN NaN 0 0 Median 6480100 2741700 3738400 6480100 2741700 3738400 0 0 0 11603 467 11920 30541 47581 47581 1 SDPGLLTNTMDVFVK GLMYSIMVHALRAFRSDPGLLTNTMDVFVK SDPGLLTNTMDVFVKEPSFDWKNFEQKMLK R S D V K E 0 0 1 2 0 0 0 1 0 0 2 1 1 1 1 1 2 0 0 2 0 0 15 0 1635.8178 P78527;H0YG84 P78527 3993 4007 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.00068881 65.842 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7303000 7303000 0 0 0 0 7303000 7303000 0 11604 1665 11921 30542;30543;30544 47582;47583;47584 47582 1462 3 SDPLGSTQDHALSQESSEPGCR DLKCGGVEQASSSPRSDPLGSTQDHALSQE QDHALSQESSEPGCRVRSIKLKEDILSCTF R S D C R V 1 1 0 2 1 2 2 2 1 0 2 0 0 0 2 5 1 0 0 0 0 0 22 0 2357.019 Q5VZL5;H7C1I7 Q5VZL5 1244 1265 ZMYM4 Zinc finger MYM-type protein 4 yes no 3 0.00045123 33.676 2 2.0375 1.7246 5.7047 2 Median NaN NaN NaN 0 0 Median 2.0375 1.7246 5.7047 2 0 Median 6118600 1959600 4159000 0 0 0 6118600 1959600 4159000 11605 1835 11922 30545;30546 47585;47586;47587 47585 3 SDPLLIGIPTSENPFK KASADLMSYCEEHARSDPLLIGIPTSENPF DPLLIGIPTSENPFKDKKTCIIL_______ R S D F K D 0 0 1 1 0 0 1 1 0 2 2 1 0 1 3 2 1 0 0 0 0 0 16 0 1726.9142 Q53GD1;Q9UBI6 Q53GD1 49 64 GNG12 Guanine nucleotide-binding protein subunit gamma;Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 yes no 2 2.1335E-08 100.55 2 1.3526 1.3706 1.5253 2 Median 1.3526 1.3706 1.5253 2 0 Median NaN NaN NaN 0 0 Median 30277000 12492000 17785000 30277000 12492000 17785000 0 0 0 11606 1787 11923 30547;30548 47588;47589;47590;47591 47588 4 SDPNRETDDTLVLSFVGQTR ASIDLPGIKGLWPLRSDPNRETDDTLVLSF ETDDTLVLSFVGQTRVLMLNGEEVEETELM R S D T R V 0 2 1 3 0 1 1 1 0 0 2 0 0 1 1 2 3 0 0 2 0 0 20 1 2249.0924 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;B7Z859 Q16531 415 434 DDB1 DNA damage-binding protein 1 yes no 3 6.6504E-07 74.364 2 2 0.91657 0.89531 17.586 4 Median 0.70168 0.78627 3.4667 2 0 Median 1.2084 1.0527 8.0053 2 0 Median 208140000 110320000 97819000 119380000 71612000 47765000 88760000 38706000 50054000 11607 1770 11924 30549;30550;30551;30552 47592;47593;47594;47595;47596;47597;47598 47593 7 SDPYLEFHK EMEARKLDNKDLFGKSDPYLEFHKQTSDGN KDLFGKSDPYLEFHKQTSDGNWLMVHRTEV K S D H K Q 0 0 0 1 0 0 1 0 1 0 1 1 0 1 1 1 0 0 1 0 0 0 9 0 1134.5346 A0A024R994;O75131;Q05DL8;A0A087WYQ3 A0A024R994 159 167 CPNE3 Copine-3 yes no 2 0.0083436 68.383 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8336200 8336200 0 8336200 8336200 0 0 0 0 11608 271 11925 30553 47599 47599 1 SDQDYILK SISVNNCVCHFSPLKSDQDYILKEGDLVKI CHFSPLKSDQDYILKEGDLVKIDLGVHVDG K S D L K E 0 0 0 2 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 8 0 980.48148 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08;F8VR77;H0YIN7;F8W0A3;F8VZ69 A8K6Y1 94 101 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.0074897 82.452 1 1 1.544 1.3589 NaN 1 Median NaN NaN NaN 0 0 Median 1.544 1.3589 NaN 1 0 Median 12965000 370060 12594000 12001000 0 12001000 963330 370060 593270 11609 328 11926 30554;30555 47600;47601 47600 2 SDQEAKPSTEDLGDKK ______________________________ DQEAKPSTEDLGDKKEGEYIKLKVIGQDSS M S D K K E 1 0 0 3 0 1 2 1 0 0 1 3 0 0 1 2 1 0 0 0 0 0 16 2 1746.8272 B8ZZJ0;B9A032;A0A024R3Z2;B8ZZN6;P63165 B8ZZJ0 2 17 SUMO1 Small ubiquitin-related modifier 1 yes no 3 7.7281E-05 54.004 1 1.4974 1.4024 NaN 1 Median NaN NaN NaN 0 0 Median 1.4974 1.4024 NaN 1 0 Median 3720800 1538400 2182400 0 0 0 3720800 1538400 2182400 11610 144 11927 30556 47602 47602 1 SDQNLQTALELTR RACWVLHYFCEVKFKSDQNLQTALELTRRC FKSDQNLQTALELTRRCLIDDREMPVKVEA K S D T R R 1 1 1 1 0 2 1 0 0 0 3 0 0 0 0 1 2 0 0 0 0 0 13 0 1487.758 O95373;B3KQG6 O95373 490 502 IPO7 Importin-7 yes no 2 0.00014246 97.911 2 2.0805 2.1676 NaN 1 Median 2.0805 2.1676 NaN 1 0 Median NaN NaN NaN 0 0 Median 43631000 7672800 35959000 43631000 7672800 35959000 0 0 0 11611 1424 11928 30557;30558 47603;47604 47603 2 SDQSYVISFVVPNQK LKNCPLIDNICAFAKSDQSYVISFVVPNQK SDQSYVISFVVPNQKRLTLLAQQKGVEGTW K S D Q K R 0 0 1 1 0 2 0 0 0 1 0 1 0 1 1 3 0 0 1 3 0 0 15 0 1709.8625 Q8TAF6;O60488;B4DH39 Q8TAF6 566 580 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.00018957 77.062 1 1.7758 1.8431 NaN 1 Median 1.7758 1.8431 NaN 1 0 Median NaN NaN NaN 0 0 Median 11357000 4872700 6484400 11357000 4872700 6484400 0 0 0 11612 1394 11929 30559 47605;47606;47607 47605 3 SDQVNGVLVLSLLDK AAEEPSGAGSEELIKSDQVNGVLVLSLLDK SDQVNGVLVLSLLDKIIGAVDQIQLTQAQL K S D D K I 0 0 1 2 0 1 0 1 0 0 4 1 0 0 0 2 0 0 0 3 0 0 15 0 1598.8879 B4DPZ5;B4DNU9;Q6NZI2 B4DPZ5 46 60 PTRF Polymerase I and transcript release factor yes no 2 4.5804E-17 137.84 2 0.94654 0.94739 4.1161 2 Median 0.94654 0.94739 4.1161 2 0 Median NaN NaN NaN 0 0 Median 48400000 25358000 23042000 48400000 25358000 23042000 0 0 0 11613 1017 11930 30560;30561 47608;47609;47610 47610 3 SDQYGRVFTSWTGGGAAASR LHGGPSSCSATGTNRSDQYGRVFTSWTGGG RVFTSWTGGGAAASRLSDWLDPASTGAQFI R S D S R L 3 2 0 1 0 1 0 4 0 0 0 0 0 1 0 3 2 1 1 1 0 0 20 1 2072.9664 CON__P15636 CON__P15636 429 448 yes yes 3 5.2997E-10 62.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10156000 10156000 0 10156000 10156000 0 0 0 0 + 11614 1163 11931 30562 47611 47611 1 SDRPAYVTILSLVR KETSLNKAREHSLLRSDRPAYVTILSLVRD RSDRPAYVTILSLVRDAAARLPNGEGTRAE R S D V R D 1 2 0 1 0 0 0 0 0 1 2 0 0 0 1 2 1 0 1 2 0 0 14 1 1588.8937 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 571 584 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 0.0086576 34.302 1 1.7688 1.6007 NaN 1 Median NaN NaN NaN 0 0 Median 1.7688 1.6007 NaN 1 0 Median 4222900 1458000 2764900 0 0 0 4222900 1458000 2764900 11615 135 11932 30563 47612 47612 1 SDSEDICLFTK SKELRVRLTLPHSIRSDSEDICLFTKDEPN HSIRSDSEDICLFTKDEPNSTPEKTEQFYR R S D T K D 0 0 0 2 1 0 1 0 0 1 1 1 0 1 0 2 1 0 0 0 0 0 11 0 1313.5809 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 90 100 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.2129E-12 145.25 2 2 0.67072 0.67241 8.2385 4 Median 0.61535 0.72051 0.48537 2 0 Median 0.72578 0.62499 1.0554 2 0 Median 872970000 527250000 345730000 633300000 386320000 246970000 239680000 140920000 98754000 11616 1415 11933 30564;30565;30566;30567 47613;47614;47615;47616;47617;47618 47613 6 SDSFENPVLQQHFR GKMKAIVEKLRFTYRSDSFENPVLQQHFRN RSDSFENPVLQQHFRNLEALALDLMEPEQA R S D F R N 0 1 1 1 0 2 1 0 1 0 1 0 0 2 1 2 0 0 0 1 0 0 14 0 1702.8063 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 475 488 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2;3 1.8892E-83 218.18 4 1 0.36287 0.41421 25.839 5 Median 0.36508 0.42158 3.4025 4 0 Median 0.27127 0.23668 NaN 1 0 Median 1138200000 816040000 322120000 1083800000 773300000 310460000 54405000 42743000 11662000 11617 82 11934 30568;30569;30570;30571;30572 47619;47620;47621;47622;47623;47624;47625;47626;47627;47628;47629;47630 47624 12 SDSGQQQPSSVGNQSHSASDPGPIR TLYLTLKIEQRERYKSDSGQQQPSSVGNQS VGNQSHSASDPGPIRATAPMWRCSRIMHMQ K S D I R A 1 1 1 2 0 4 0 3 1 1 0 0 0 0 3 7 0 0 0 1 0 0 25 0 2522.1382 F2Z2U4;Q59FH1;H0Y4W2 F2Z2U4 3257 3281 TRRAP yes no 3 0.029013 15.499 1 0.66687 0.67389 NaN 1 Median 0.66687 0.67389 NaN 1 0 Median NaN NaN NaN 0 0 Median 9904600 5641800 4262800 9904600 5641800 4262800 0 0 0 11618 1253 11935 30573 47631;47632 47631 2 SDSGTAAQTSLDIDK EDTVLTRRQKEAKTKSDSGTAAQTSLDIDK SDSGTAAQTSLDIDKNEKCYLCKSLVPFRE K S D D K N 2 0 0 3 0 1 0 1 0 1 1 1 0 0 0 3 2 0 0 0 0 0 15 0 1507.7002 A0A024R7R0;Q96RL1;Q9NTC5;A0A024R7S2 A0A024R7R0 545 559 RAP80;UIMC1;DKFZp434I1926 BRCA1-A complex subunit RAP80 yes no 2 0.00060004 54.023 1 0.67433 0.68001 NaN 1 Median 0.67433 0.68001 NaN 1 0 Median NaN NaN NaN 0 0 Median 7712000 4918800 2793200 7712000 4918800 2793200 0 0 0 11619 233 11936 30574 47633 47633 1 SDSHPSDALTR RRPYAGGAAQLALDKSDSHPSDALTRKKPA ALDKSDSHPSDALTRKKPAKAESKSFAVGM K S D T R K 1 1 0 2 0 0 0 0 1 0 1 0 0 0 1 3 1 0 0 0 0 0 11 0 1184.5422 Q53HR2;B4DEA8;P49748;J3QKU9;K7EQP4;B4DYY0;K7EJW8 Q53HR2 52 62 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.00041575 80.24 1 1.3237 1.3776 NaN 1 Median 1.3237 1.3776 NaN 1 0 Median NaN NaN NaN 0 0 Median 21915000 7324700 14590000 21915000 7324700 14590000 0 0 0 11620 965 11937 30575 47634 47634 1 SDSVVLVSQSR YIIGRKRKTLQLSHKSDSVVLVSQSRQRTC LSHKSDSVVLVSQSRQRTCRRKYPNYGRRN K S D S R Q 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 4 0 0 0 3 0 0 11 0 1175.6146 Q9NSI6;H7BZR9 Q9NSI6 784 794 BRWD1 Bromodomain and WD repeat-containing protein 1 yes no 2 0.029573 49.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11621 2068 11938 30576 47635 47635 1 SDSYVELSQYR ______________________________ KALRSDSYVELSQYRDQHFRVREAGPRDGK R S D Y R D 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 3 0 0 2 1 0 0 11 0 1345.615 F8WE41;Q7Z3W9;P52298 F8WE41 11 21 NCBP2;DKFZp686G18222 Nuclear cap-binding protein subunit 2 yes no 2 0.0021686 77.192 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5210700 0 5210700 5210700 0 5210700 0 0 0 11622 1269 11939 30577 47636 47636 1 SDTLPLATR PVGNRVTVFDLKNNKSDTLPLATRYNVKCV DLKNNKSDTLPLATRYNVKCVGLSPDGRLA K S D T R Y 1 1 0 1 0 0 0 0 0 0 2 0 0 0 1 1 2 0 0 0 0 0 9 0 972.52401 Q15269;A0A0B4J2E5;C9J544 Q15269 47 55 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.00016983 107.57 2 2 1.0658 1.0194 7.8814 4 Median 0.94332 1.1021 5.3172 2 0 Median 1.1778 0.97228 0.96091 2 0 Median 547040000 296050000 250990000 513910000 280780000 233130000 33133000 15274000 17859000 11623 1756 11940 30578;30579;30580;30581 47637;47638;47639;47640;47641;47642;47643 47640 7 SDTYYQSPTGDR KRREVFRKSGATCGRSDTYYQSPTGDRIRS CGRSDTYYQSPTGDRIRSKVELTRYLGPAC R S D D R I 0 1 0 2 0 1 0 1 0 0 0 0 0 0 1 2 2 0 2 0 0 0 12 0 1388.5844 A0A0A0MS90;A8K654;B4DI41;Q9UIS9;B4DUR3 A0A0A0MS90 31 42 MBD1 Methyl-CpG-binding domain protein 1 yes no 2 5.0057E-18 145.25 2 2 0.80103 0.80434 22.348 3 Plateau 0.79457 0.81606 2.046 2 0 Median 0.65208 0.55459 NaN 1 0 Median 37453000 19673000 17780000 30810000 17056000 13753000 6643600 2616700 4026900 11624 477 11941 30582;30583;30584;30585 47644;47645;47646;47647;47648 47644 5 SDVEAIFSK SRVFIGNLNTLVVKKSDVEAIFSKYGKIVG TLVVKKSDVEAIFSKYGKIVGCSVHKGFAF K S D S K Y 1 0 0 1 0 0 1 0 0 1 0 1 0 1 0 2 0 0 0 1 0 0 9 0 994.49713 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V555;G3V575;D3DPI2;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8;B4DMJ1;B4DSU6;G3V4M8;G3V2H6;Q569J8;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V5X6;G3V3K6;G3V251 G3V4W0 31 39 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 2 0.0054512 66.692 2 1 1.0571 1.2225 54.303 3 Median 1.0732 1.2244 0.21736 2 0 Median 0.61024 0.47801 NaN 1 0 Median 332780000 153010000 179780000 321190000 145930000 175260000 11595000 7078300 4517100 11625 837;781 11942 30586;30587;30588 47649;47650;47651;47652 47649 4 SEAAAPHTDAGGGLSSDEEEGTSSQAEAAR GLLIRERLKRRYGPKSEAAAPHTDAGGGLS SDEEEGTSSQAEAARILAASWPQNREDEEK K S E A R I 7 1 0 2 0 1 5 4 1 0 1 0 0 0 1 5 2 0 0 0 0 0 30 0 2887.234 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146 A0A024R2M8 869 898 XPC DNA repair protein complementing XP-C cells yes no 3 0.029122 23.149 1 1 1.2638 1.1126 NaN 1 Median NaN NaN NaN 0 0 Median 1.2638 1.1126 NaN 1 0 Median 4072100 1000700 3071400 1592600 0 1592600 2479400 1000700 1478700 11626 118 11943 30589;30590 47653;47654 47654 2 SEAHTADGISIR KKAAVWEITGAEFSKSEAHTADGISIRFPR FSKSEAHTADGISIRFPRCTRIRDDKDWKS K S E I R F 2 1 0 1 0 0 1 1 1 2 0 0 0 0 0 2 1 0 0 0 0 0 12 0 1255.6157 P49916;B7Z6I3 P49916 792 803 LIG3 DNA ligase 3;DNA ligase yes no 3 0.014355 23.711 1 0.51501 0.45304 NaN 1 Median NaN NaN NaN 0 0 Median 0.51501 0.45304 NaN 1 0 Median 3623500 2204700 1418800 0 0 0 3623500 2204700 1418800 11627 1589 11944 30591 47655 47655 1 SEAPETPMEEEAELVLTEK KLHNELQSGSLRLGKSEAPETPMEEEAELV ETPMEEEAELVLTEKSSGTFLSGLSDCTNV K S E E K S 2 0 0 0 0 0 7 0 0 0 2 1 1 0 2 1 2 0 0 1 0 0 19 0 2130.9878 B3KMR5;Q5JTH9;A0A087X1U8 B3KMR5 72 90 RRP12 RRP12-like protein yes no 2 2.5723E-12 105.03 2 1.7227 1.8112 8.8307 2 Median 1.7227 1.8112 8.8307 2 0 Median NaN NaN NaN 0 0 Median 80953000 27845000 53108000 80953000 27845000 53108000 0 0 0 11628 907 11945 30592;30593 47656;47657;47658;47659;47660 47659 734 5 SEAPSYIAVPDPSVLK PKSSPHEVKFQMQRKSEAPSYIAVPDPSVL EAPSYIAVPDPSVLKQGFSKDPSTWSVDEV K S E L K Q 2 0 0 1 0 0 1 0 0 1 1 1 0 0 3 3 0 0 1 2 0 0 16 0 1671.872 Q9UQR0 Q9UQR0 606 621 SCML2 Sex comb on midleg-like protein 2 yes yes 2 0.016503 30.438 1 0.80857 0.63094 NaN 1 Median NaN NaN NaN 0 0 Median 0.80857 0.63094 NaN 1 0 Median 3781000 2092400 1688600 0 0 0 3781000 2092400 1688600 11629 2118 11946 30594 47661;47662 47662 2 SEASLHPVLMSEAPWNTR SFQAILDHTYKMHVKSEASLHPVLMSEAPW SLHPVLMSEAPWNTRAKREKLTELMFEHYN K S E T R A 2 1 1 0 0 0 2 0 1 0 2 0 1 0 2 3 1 1 0 1 0 0 18 0 2023.9786 Q6FI97;Q53FS0;O96019;H7C5S0 Q6FI97 113 130 BAF53A;ACTL6A Actin-like protein 6A yes no 3 1.7094E-05 52.731 1 1.1349 1.2305 NaN 1 Median 1.1349 1.2305 NaN 1 0 Median NaN NaN NaN 0 0 Median 27764000 13425000 14338000 27764000 13425000 14338000 0 0 0 11630 1434 11947 30595 47663 47663 1130 1 SEATDGGFTSQIR TPKKSKKKSNKRSEKSEATDGGFTSQIRKA EKSEATDGGFTSQIRKASNTSKNISKAKQL K S E I R K 1 1 0 1 0 1 1 2 0 1 0 0 0 1 0 2 2 0 0 0 0 0 13 0 1367.6317 Q96QE3;H0UIC2;A0A075B754 Q96QE3 679 691 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 9.028E-06 101.3 1 1 2.0415 1.9247 62.522 2 Median 1.1638 1.237 NaN 1 0 Median 3.5812 2.9948 NaN 1 0 Median 27955000 11610000 16345000 24168000 10687000 13480000 3787300 923030 2864300 11631 1984 11948 30596;30597 47664;47665;47666 47664 2 SEATFQFTVER HNTAEEDMEDDTSWRSEATFQFTVERFSRL TSWRSEATFQFTVERFSRLSESVLSPPCFV R S E E R F 1 1 0 0 0 1 2 0 0 0 0 0 0 2 0 1 2 0 0 1 0 0 11 0 1313.6252 Q93009;B7ZAX6;Q6U8A4;F5H2X1;B7Z842;H3BUV0;H3BTM1;H3BRA2;H3BQD1;H3BMF6 Q93009 67 77 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.00303 68.893 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2283900 2283900 0 0 0 0 2283900 2283900 0 11632 1954 11949 30598 47667 47667 1 SEAVVEYVFSGSR QKAKQFLPFLQRAGRSEAVVEYVFSGSRLK GRSEAVVEYVFSGSRLKLYLPKETCLITFL R S E S R L 1 1 0 0 0 0 2 1 0 0 0 0 0 1 0 3 0 0 1 3 0 0 13 0 1428.6885 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8;H7C597 A0A140VK49 527 539 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.0020343 74.76 1 1 0.74132 0.62267 NaN 1 Median NaN NaN NaN 0 0 Median 0.74132 0.62267 NaN 1 0 Median 19845000 18192000 1653800 15549000 15549000 0 4296800 2643100 1653800 11633 618 11950 30599;30600 47668;47669;47670;47671 47669 4 SECLNNIGDSSPLIR AHFQNFPNGVTDFIKSECLNNIGDSSPLIR SECLNNIGDSSPLIRATVGILITTIASKGE K S E I R A 0 1 2 1 1 0 1 1 0 2 2 0 0 0 1 3 0 0 0 0 0 0 15 0 1673.8043 A0A024RAM0;Q92973;B4DSC0;E7EW37 A0A024RAM0 101 115 TNPO1 Transportin-1 yes no 2 0.002921 47.712 2 1 1.829 1.742 5.1793 2 Median 1.8001 1.807 NaN 1 0 Median 1.8583 1.6794 NaN 1 0 Median 33479000 5059900 28419000 31271000 4446500 26825000 2207600 613430 1594100 11634 309 11951 30601;30602;30603 47672;47673;47674;47675 47672 4 SEDDESGAGELTR SETYLEAHRIVKMNKSEDDESGAGELTREE NKSEDDESGAGELTREELRQIAEEDFYEKL K S E T R E 1 1 0 2 0 0 3 2 0 0 1 0 0 0 0 2 1 0 0 0 0 0 13 0 1364.5692 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993 B3KUD7 202 214 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 1.6053E-49 199.09 2 2 0.96498 0.90587 36.606 4 Median 1.1586 1.2439 6.2707 2 0 Median 0.77106 0.66346 5.4643 2 0 Median 75085000 33504000 41581000 70686000 31257000 39429000 4399500 2247400 2152100 11635 560 11952 30604;30605;30606;30607 47676;47677;47678;47679;47680;47681;47682 47676 7 SEDFSLPAYMDR ISTSVCVRAHESVVKSEDFSLPAYMDRRDH VVKSEDFSLPAYMDRRDHPLPEVAHVKHLS K S E D R R 1 1 0 2 0 0 1 0 0 0 1 0 1 1 1 2 0 0 1 0 0 0 12 0 1429.6184 P13073;Q86WV2;H3BN72;H3BNV9;H3BNI5 P13073 30 41 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2 0.00038748 65.627 2 1.5209 1.6201 2.4371 2 Median 1.5209 1.6201 2.4371 2 0 Median NaN NaN NaN 0 0 Median 63550000 23519000 40031000 63550000 23519000 40031000 0 0 0 11636 1477 11953 30608;30609 47683;47684;47685;47686 47686 1225 4 SEDGVEGDLGETQSR EYQRIYTTKIKPRLKSEDGVEGDLGETQSR SEDGVEGDLGETQSRTITVTRRVTAYTVDV K S E S R T 0 1 0 2 0 1 3 3 0 0 1 0 0 0 0 2 1 0 0 1 0 0 15 0 1577.6805 Q09666;B4DTV0 Q09666 135 149 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 3.3001E-10 116.71 1 1 1.138 1.0633 46.509 2 Median 1.4245 1.4773 NaN 1 0 Median 0.90915 0.76528 NaN 1 0 Median 42233000 17138000 25094000 37683000 14873000 22810000 4549500 2265300 2284200 11637 1696 11954 30610;30611 47687;47688;47689 47688 3 SEDLDNSIDK ELEAINKRVKDTMARSEDLDNSIDKTEAGI DTMARSEDLDNSIDKTEAGIKELQKSMERW R S E D K T 0 0 1 3 0 0 1 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 10 0 1134.5041 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 880 889 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.00050021 85.862 2 0.95185 1.0022 2.7192 2 Median 0.95185 1.0022 2.7192 2 0 Median NaN NaN NaN 0 0 Median 67753000 33422000 34330000 67753000 33422000 34330000 0 0 0 11638 803 11955 30612;30613 47690;47691;47692;47693 47691 4 SEDLLDYGPFR SRNVESYTKLGNPTRSEDLLDYGPFRDVPA NPTRSEDLLDYGPFRDVPAYSQDTFKVHYE R S E F R D 0 1 0 2 0 0 1 1 0 0 2 0 0 1 1 1 0 0 1 0 0 0 11 0 1310.6143 Q96HX3;Q6IBR0;Q53EP4;P04843;B4DL99;B7Z4L4 Q96HX3 155 165 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.00046386 76.465 2 2 1.0297 0.99567 32.884 4 Median 1.2358 1.3087 1.6229 2 0 Median 0.86769 0.74195 4.5565 2 0 Median 44353000 20815000 23538000 37105000 17138000 19967000 7248100 3676800 3571300 11639 1444 11956 30614;30615;30616;30617 47694;47695;47696;47697;47698;47699;47700 47698 7 SEDPDQQYLILNTAR ADEQSLVGRFIHLLRSEDPDQQYLILNTAR SEDPDQQYLILNTARKHFGAGGNQRIRFTL R S E A R K 1 1 1 2 0 2 1 0 0 1 2 0 0 0 1 1 1 0 1 0 0 0 15 0 1761.8533 Q96QK1;Q5HYM2 Q96QK1 500 514 VPS35;DKFZp686O2462 Vacuolar protein sorting-associated protein 35 yes no 2 0.038144 41.052 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11640 1985 11957 30618 47701 47701 1 SEDQDLQGLK SGGGGGGEEERLEEKSEDQDLQGLKDKPLK RLEEKSEDQDLQGLKDKPLKFKKVKKDKKE K S E L K D 0 0 0 2 0 2 1 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1131.5408 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;I6LM39;A0A087WVW7;B5MCB4;A0A0S2Z401;A0A0D9SFX7;D5L9I4;A0A0S2Z3U3;A0A075BPH5;A0A0D9SEX1;C9JH89;A0A0S2Z3V4 A0A140VKC4 25 34 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.00035656 88.948 2 2 0.55965 0.52905 7.7279 3 Median 0.54448 0.54839 5.0782 2 0 Median 0.61417 0.4871 NaN 1 0 Median 35296000 22768000 12529000 28792000 17861000 10931000 6504000 4906700 1597300 11641 623 11958 30619;30620;30621;30622 47702;47703;47704;47705;47706;47707 47702 6 SEDSSGAAGLSGLHR EDKLKREEEKREAEKSEDSSGAAGLSGLHR SEDSSGAAGLSGLHRTYSQDCSFKNSMYHV K S E H R T 2 1 0 1 0 0 1 3 1 0 2 0 0 0 0 4 0 0 0 0 0 0 15 0 1442.675 Q86U86;E7EVG2;H0Y5B5;Q9NUX9 Q86U86 931 945 PBRM1 Protein polybromo-1 yes no 2 0.0071314 51.013 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11642 1883 11959 30623 47708 47708 1 SEEDNEIESEEEVQPK EEEEMEVGTTYVTDKSEEDNEIESEEEVQP EEDNEIESEEEVQPKTQGSRRSSRQIKKRR K S E P K T 0 0 1 1 0 1 7 0 0 1 0 1 0 0 1 2 0 0 0 1 0 0 16 0 1889.8014 P52701;A0A087WWJ1;Q1L838;C9J7Y7;Q3SWU9 P52701 219 234 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 3.1593E-18 120.57 3 2.2586 2.3552 NaN 1 Median 2.2586 2.3552 NaN 1 0 Median NaN NaN NaN 0 0 Median 18460000 3715900 14744000 18460000 3715900 14744000 0 0 0 11643 1601 11960 30624;30625;30626 47709;47710;47711;47712 47709 4 SEEELLVIFNK KVLAQYYTVTDEHHRSEEELLVIFNKKISK EHHRSEEELLVIFNKKISKNPTFKLLKDKV R S E N K K 0 0 1 0 0 0 3 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1319.6973 Q9NX58;A8K3Y5 Q9NX58 350 360 LYAR Cell growth-regulating nucleolar protein yes no 2 9.0493E-14 150.17 2 2 0.88883 0.80692 6.5655 4 Median 0.80362 0.80692 1.0415 2 0 Median 1.044 0.84434 10.377 2 0 Median 105460000 54323000 51138000 55603000 31316000 24287000 49857000 23007000 26851000 11644 2079 11961 30627;30628;30629;30630 47713;47714;47715;47716;47717;47718;47719 47719 6 SEEELLVIFNKK KVLAQYYTVTDEHHRSEEELLVIFNKKISK HHRSEEELLVIFNKKISKNPTFKLLKDKVK R S E K K I 0 0 1 0 0 0 3 0 0 1 2 2 0 1 0 1 0 0 0 1 0 0 12 1 1447.7922 Q9NX58;A8K3Y5 Q9NX58 350 361 LYAR Cell growth-regulating nucleolar protein yes no 2 0.0072614 53.756 1 2.3639 2.0509 NaN 1 Median NaN NaN NaN 0 0 Median 2.3639 2.0509 NaN 1 0 Median 2658500 690060 1968400 0 0 0 2658500 690060 1968400 11645 2079 11962 30631 47720;47721 47720 2 SEEGNVSAPGPESK KSSSEPPPRKPVEEKSEEGNVSAPGPESKQ KSEEGNVSAPGPESKQATTPASRKSSKQVS K S E S K Q 1 0 1 0 0 0 3 2 0 0 0 1 0 0 2 3 0 0 0 1 0 0 14 0 1386.6263 Q03164;E9PR05;B3W6H7;H7BYJ6;Q8N6B4;Q1HA41 Q03164 1271 1284 KMT2A;TET1-MLL;MLL/CALM fusion;MLL-MAML2 Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 1.907E-21 147.26 2 2 0.87829 0.93312 35.645 3 Median 0.8665 0.90141 4.8897 2 0 Median 2.102 1.6664 NaN 1 0 Median 52882000 28674000 24208000 46837000 25328000 21510000 6044800 3346300 2698500 11646 1680 11963 30632;30633;30634;30635 47722;47723;47724;47725;47726;47727 47725 6 SEEGPGWTILR ASSRKKPKAKQTEVKSEEGPGWTILRDDFM TEVKSEEGPGWTILRDDFMMGASMKDWDKE K S E L R D 0 1 0 0 0 0 2 2 0 1 1 0 0 0 1 1 1 1 0 0 0 0 11 0 1243.6197 Q9Y3B9;A8K201 Q9Y3B9 240 250 RRP15 RRP15-like protein yes no 2 7.8857E-10 125.56 3 2 0.99741 0.97759 17.242 4 Median 0.76487 0.83082 14.527 2 0 Median 1.2693 1.0737 4.7885 2 0 Median 150740000 77194000 73546000 106830000 57935000 48896000 43909000 19259000 24649000 11647 2134 11964 30636;30637;30638;30639;30640 47728;47729;47730;47731;47732;47733;47734;47735;47736 47728 9 SEEPAGQILSHLSSELK PTSSQDEELMEVVEKSEEPAGQILSHLSSE EPAGQILSHLSSELKEMSTSNFESSPEVEE K S E L K E 1 0 0 0 0 1 3 1 1 1 3 1 0 0 1 4 0 0 0 0 0 0 17 0 1823.9265 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1245 1261 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 3 9.0886E-05 48.883 2 1.3766 1.4328 2.4039 2 Median 1.3766 1.4328 2.4039 2 0 Median NaN NaN NaN 0 0 Median 41260000 19665000 21595000 41260000 19665000 21595000 0 0 0 11648 619 11965 30641;30642 47737;47738;47739;47740 47739 4 SEEQPMDLENR ETPKQEEQKESEKMKSEEQPMDLENRSTAN EKMKSEEQPMDLENRSTANVLEETTVKKEK K S E N R S 0 1 1 1 0 1 3 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 11 0 1346.5772 Q96T23;H0YER1;H0YCN2;Q05DG0 Q96T23 255 265 RSF1 Remodeling and spacing factor 1 yes no 2 5.7305E-05 96.342 2 0.56759 0.57195 9.7112 2 Median 0.56759 0.57195 9.7112 2 0 Median NaN NaN NaN 0 0 Median 18891000 11509000 7381300 18891000 11509000 7381300 0 0 0 11649 1991 11966 30643;30644 47741;47742;47743;47744 47742 1821 4 SEETNTEIVECILK STEFRNIQKLPVESKSEETNTEIVECILKR KSEETNTEIVECILKRGQKATLLQQRREGE K S E L K R 0 0 1 0 1 0 4 0 0 2 1 1 0 0 0 1 2 0 0 1 0 0 14 0 1663.7975 P46013 P46013 893 906 MKI67 Antigen KI-67 yes yes 2 1.2641E-152 268.77 2 2 2.4222 2.4019 27.961 4 Median 1.662 1.8882 1.6564 2 0 Median 3.5507 3.0625 1.9887 2 0 Median 518470000 150540000 367930000 259380000 95468000 163910000 259090000 55069000 204020000 11650 1569 11967 30645;30646;30647;30648 47745;47746;47747;47748;47749;47750;47751;47752;47753 47747 9 SEFEQNLSEK DHLRDVLRVQEQELKSEFEQNLSEKLSEQE EQELKSEFEQNLSEKLSEQELQFRRLSQEQ K S E E K L 0 0 1 0 0 1 3 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 10 0 1209.5513 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 507 516 IMMT MICOS complex subunit MIC60 no no 2 7.8981E-12 141.2 2 2 1.4045 1.3523 26.109 4 Median 0.95153 1.0762 3.9599 2 0 Median 2.0817 1.687 2.9374 2 0 Median 178980000 85355000 93622000 162620000 80418000 82198000 16362000 4937100 11425000 11651 1774;1029;1128 11968 30649;30650;30651;30652 47754;47755;47756;47757;47758;47759;47760;47761;47762 47758 9 SEFLSTAPR GHSASDKVQPKNNDKSEFLSTAPRSLRKRL PKNNDKSEFLSTAPRSLRKRLIVPRSHSDS K S E P R S 1 1 0 0 0 0 1 0 0 0 1 0 0 1 1 2 1 0 0 0 0 0 9 0 1006.5084 B4DYU9;A0A024R411;Q13416 B4DYU9 156 164 ORC2L;ORC2 Origin recognition complex subunit 2 yes no 2 0.034216 44.349 1 1.544 1.3612 NaN 1 Median NaN NaN NaN 0 0 Median 1.544 1.3612 NaN 1 0 Median 1883400 680520 1202900 0 0 0 1883400 680520 1202900 11652 146 11969 30653 47763 47763 1 SEFNFSSK NLTAAKKNELVQKTKSEFNFSSKTYQEFNH ELVQKTKSEFNFSSKTYQEFNHYLTSMVGC K S E S K T 0 0 1 0 0 0 1 0 0 0 0 1 0 2 0 3 0 0 0 0 0 0 8 0 944.42396 B4DZL4;A0A024RCG4;Q92674 B4DZL4 628 635 FSHPRH1;CENPI Centromere protein I yes no 2 0.020265 58.596 1 0.77125 0.78327 NaN 1 Median 0.77125 0.78327 NaN 1 0 Median NaN NaN NaN 0 0 Median 13647000 6911700 6735700 13647000 6911700 6735700 0 0 0 11653 360 11970 30654 47764 47764 1 SEGALELADVSNELPGLK NPIEDEAVIASLLEKSEGALELADVSNELP ALELADVSNELPGLKWMPGITQWKVMTKDG K S E L K W 2 0 1 1 0 0 3 2 0 0 4 1 0 0 1 2 0 0 0 1 0 0 18 0 1840.9418 Q08J23 Q08J23 339 356 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 5.5136E-12 135.58 2 0.84815 0.69973 3.9488 2 Median NaN NaN NaN 0 0 Median 0.84815 0.69973 3.9488 2 0 Median 75146000 40128000 35018000 0 0 0 75146000 40128000 35018000 11654 1694 11971 30655;30656 47765;47766 47765 2 SEGEGEAASADDGSLNTSGAGPK AEDRAVGAQASVGSRSEGEGEAASADDGSL SADDGSLNTSGAGPKSWQVPPPAPEVQIRT R S E P K S 4 0 1 2 0 0 3 5 0 0 1 1 0 0 1 4 1 0 0 0 0 0 23 0 2105.8985 M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;M0R2I2;J3KQS6;A0A024R7L2;Q9NWV8 M0QXG9 49 71 BABAM1;HSPC142 BRISC and BRCA1-A complex member 1 yes no 2 1.2591E-05 62.377 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11655 230 11972 30657;30658 47767;47768 47768 2 SEGFDTYR SMDSSHVSLVQLTLRSEGFDTYRCDRNLAM LVQLTLRSEGFDTYRCDRNLAMGVNLTSMS R S E Y R C 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 8 0 973.41412 Q6FI35;Q6FHF5;P12004;B4DUA2;Q7Z6A3;Q7Z6A2;Q7Z6A1 Q6FI35 54 61 PCNA Proliferating cell nuclear antigen yes no 2 0.018605 68.383 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11656 1473 11973 30659;30660 47769;47770 47770 2 SEGGEDYTGATVIEPLK LRQAMHEGLLMPVVKSEGGEDYTGATVIEP GGEDYTGATVIEPLKGYYDVPIATLDFSSL K S E L K G 1 0 0 1 0 0 3 3 0 1 1 1 0 0 1 1 2 0 1 1 0 0 17 0 1764.8418 M0QZR8;Q59FA0;A0A024R4F4;M0R2B7;P28340;M0QZB4 M0QZR8 575 591 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 9.1183E-19 122.39 3 0.8872 0.92961 NaN 1 Median 0.8872 0.92961 NaN 1 0 Median NaN NaN NaN 0 0 Median 15985000 10221000 5763900 15985000 10221000 5763900 0 0 0 11657 155 11974 30661;30662;30663 47771;47772;47773;47774;47775 47771 5 SEGQGIWALLGR CESLEELQNLNGKLRSEGQGIWALLGRITG KLRSEGQGIWALLGRITGQKLNIPAILRAP R S E G R I 1 1 0 0 0 1 1 3 0 1 2 0 0 0 0 1 0 1 0 0 0 0 12 0 1285.6779 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 677 688 PHF14 PHD finger protein 14 yes no 2 0.0010133 62.463 1 1.5681 1.2863 NaN 1 Median NaN NaN NaN 0 0 Median 1.5681 1.2863 NaN 1 0 Median 8806900 2792000 6015000 0 0 0 8806900 2792000 6015000 11658 590 11975 30664 47776;47777 47777 2 SEGSEYEEIPK NHPPAPRGRTASETRSEGSEYEEIPKRRRQ SETRSEGSEYEEIPKRRRQRGSETGSETHE R S E P K R 0 0 0 0 0 0 4 1 0 1 0 1 0 0 1 2 0 0 1 0 0 0 11 0 1266.5616 P48634;B4DLY2 P48634 1089 1099 PRRC2A Protein PRRC2A yes no 2 0.032791 37.476 1 2.5394 2.2254 NaN 1 Median NaN NaN NaN 0 0 Median 2.5394 2.2254 NaN 1 0 Median 1027100 280870 746230 0 0 0 1027100 280870 746230 11659 1576 11976 30665 47778 47778 1 SEGVVAVLLTK GTCKAFDTAGNGYCRSEGVVAVLLTKKSLA GYCRSEGVVAVLLTKKSLARRVYATILNAG R S E T K K 1 0 0 0 0 0 1 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 11 0 1114.6598 A0A0U1RQF0;P49327 A0A0U1RQF0 225 235 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.061204 33.158 1 1.7157 1.3539 NaN 1 Median NaN NaN NaN 0 0 Median 1.7157 1.3539 NaN 1 0 Median 3225000 1389300 1835700 0 0 0 3225000 1389300 1835700 11660 587 11977 30666 47779 47779 1 SEHGPISFFPESGQPECLK GKPYRSKAGLAYHLRSEHGPISFFPESGQP PISFFPESGQPECLKEMNLESKSGGRVQRR R S E L K E 0 0 0 0 1 1 3 2 1 1 1 1 0 2 3 3 0 0 0 0 0 0 19 0 2144.9837 G3XAG1;Q96ME7;B4DES6;B7Z9P6;Q658M0;B4E0X7 G3XAG1 307 325 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 3 2.3336E-06 76.713 2 2 0.47204 0.49253 11.732 3 Median 0.45848 0.48136 3.243 2 0 Median 0.72176 0.58751 NaN 1 0 Median 76795000 46485000 30310000 65394000 41558000 23836000 11401000 4927300 6473400 11661 1275 11978 30667;30668;30669;30670 47780;47781;47782;47783;47784;47785;47786 47782 7 SEHPGLSIGDTAK SAFFLFCSEHRPKIKSEHPGLSIGDTAKKL IKSEHPGLSIGDTAKKLGEMWSEQSAKDKQ K S E A K K 1 0 0 1 0 0 1 2 1 1 1 1 0 0 1 2 1 0 0 0 0 0 13 0 1310.6466 Q5U071;P26583;D6R9A6 Q5U071 115 127 HMGB2 High mobility group protein B2 yes no 2;3 1.1591E-37 158.08 4 3 0.14278 0.12693 35.817 4 Median 0.17109 0.18012 25.034 2 0 Median 0.12803 0.10242 5.8719 2 0 Median 283540000 264560000 18976000 241730000 227420000 14316000 41803000 37143000 4660100 11662 1521 11979 30671;30672;30673;30674;30675;30676;30677 47787;47788;47789;47790;47791;47792;47793 47790 7 SEIDLFNIR AGTDDHTLIRVMVSRSEIDLFNIRKEFRKN RVMVSRSEIDLFNIRKEFRKNFATSLYSMI R S E I R K 0 1 1 1 0 0 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1105.5768 V9HWE0;P08758;D6RBE9;D6RBL5 V9HWE0 277 285 HEL-S-7;ANXA5 Annexin;Annexin A5 yes no 2 0.05463 45.081 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11663 1459 11980 30678 47794 47794 1 SEIEYYAMLAK AKLVILANNCPALRKSEIEYYAMLAKTGVH ALRKSEIEYYAMLAKTGVHHYSGNNIELGT K S E A K T 2 0 0 0 0 0 2 0 0 1 1 1 1 0 0 1 0 0 2 0 0 0 11 0 1316.6322 E5RI99;A0A024R9D3;P62888 E5RI99 58 68 RPL30 60S ribosomal protein L30 yes no 2 8.7437E-05 93.649 1 5 0.80736 0.64026 42.85 5 Median 1.132 1.2972 NaN 1 0 Median 0.67914 0.54676 23.125 4 0 Median 208880000 106520000 102360000 164800000 83039000 81757000 44087000 23482000 20606000 11664 276 11981;11982 30679;30680;30681;30682;30683;30684 47795;47796;47797;47798;47799;47800;47801 47798 211 7 SEIIPETNQIYENDNK DSKIGKKPRLNVCQKSEIIPETNQIYENDN EIIPETNQIYENDNKGVHDLEKDNFFSLTP K S E N K G 0 0 3 1 0 1 3 0 0 3 0 1 0 0 1 1 1 0 1 0 0 0 16 0 1905.8956 Q562F6;B7Z7S9 Q562F6 816 831 SGOL2 Shugoshin-like 2 yes no 2 0.00014413 75.819 2 2 1.4601 1.3432 24.002 4 Median 1.0526 1.0915 5.2133 2 0 Median 2.0404 1.6447 4.5105 2 0 Median 56351000 24885000 31467000 38809000 19162000 19647000 17542000 5722400 11820000 11665 1795 11983 30685;30686;30687;30688 47802;47803;47804;47805;47806;47807;47808;47809 47803 8 SEIIPMFSNLASDEQDSVR KLGEFAKVLELDNVKSEIIPMFSNLASDEQ PMFSNLASDEQDSVRLLAVEACVNIAQLLP K S E V R L 1 1 1 2 0 1 2 0 0 2 1 0 1 1 1 4 0 0 0 1 0 0 19 0 2136.9997 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;C9J9C1 B4DQY1 169 187 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.00010978 60.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11666 723 11984 30689 47810 47810 559 1 SEISELR NREVATNSELVQSGKSEISELRRTMQNLEI SELVQSGKSEISELRRTMQNLEIELQSQLS K S E L R R 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 7 0 832.42905 CON__P02533;P02533;A0A024R1X6;Q13092;CON__Q04695;Q04695;F5GWP8;Q14666 CON__P02533 329 335 KRT14;K14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 0.0045621 114.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21498000 21498000 0 21498000 21498000 0 0 0 0 + 11667 1150;1168 11985 30690 47811 47811 1 SEITELR TTEIDNNIEQISSYKSEITELRRNVQALEI IEQISSYKSEITELRRNVQALEIELQSQLA K S E L R R 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 7 0 846.4447 CON__P13645;P13645;CON__P02535-1 CON__P13645 363 369 KRT10 Keratin, type I cytoskeletal 10 yes no 2 0.032752 77.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118640000 118640000 0 118640000 118640000 0 0 0 0 + 11668 1161 11986 30691 47812 47812 1 SEITELRR TTEIDNNIEQISSYKSEITELRRNVQALEI EQISSYKSEITELRRNVQALEIELQSQLAL K S E R R N 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 8 1 1002.5458 CON__P13645;P13645;CON__P02535-1 CON__P13645 363 370 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 2.3362E-08 134.81 2 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 869170000 869170000 0 669330000 669330000 0 199840000 199840000 0 + 11669 1161 11987 30692;30693;30694;30695;30696 47813;47814;47815;47816;47817;47818 47813 6 SEIVPLFTSLASDEQDSVR KLGEFAKVLELDSVKSEIVPLFTSLASDEQ PLFTSLASDEQDSVRLLAVEACVSIAQLLS K S E V R L 1 1 0 2 0 1 2 0 0 1 2 0 0 1 1 4 1 0 0 2 0 0 19 0 2092.0324 A8K8B0;P30154;B7Z1G3 A8K8B0 215 233 PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 2 0.0006178 37.55 1 1.1712 1.0158 NaN 1 Median NaN NaN NaN 0 0 Median 1.1712 1.0158 NaN 1 0 Median 2104300 846640 1257600 0 0 0 2104300 846640 1257600 11670 774 11988 30697 47819 47819 1 SELEDFELDK DLDDILESITNRMIKSELEDFELDKSADFS NRMIKSELEDFELDKSADFSQSTSIGIKNN K S E D K S 0 0 0 2 0 0 3 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1223.5558 B7ZMF2;Q9NVI1;H3BP78;F8W7R3;B3KNW8 B7ZMF2 716 725 FANCI Fanconi anemia group I protein yes no 2 0.027002 52.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3476900 0 3476900 3476900 0 3476900 0 0 0 11671 1116 11989 30698 47820 47820 1 SELHLLDFQGK EMKRVAEAKKIERLKSELHLLDFQGKQQNK ERLKSELHLLDFQGKQQNKHVFFFDTKKEV K S E G K Q 0 0 0 1 0 1 1 1 1 0 3 1 0 1 0 1 0 0 0 0 0 0 11 0 1285.6667 Q9Y3A2 Q9Y3A2 121 131 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2;3 0.00037499 83.438 3 2 0.97515 1.0721 16.871 5 Median 0.96712 1.0801 2.0862 3 0 Median 0.99451 0.80121 0.34639 2 0 Median 196250000 102680000 93571000 186290000 97409000 88878000 9966800 5273600 4693200 11672 2132 11990 30699;30700;30701;30702;30703 47821;47822;47823;47824;47825;47826;47827 47822 7 SELISCIENGNYAK RGKPALVRRHTLEDRSELISCIENGNYAKA RSELISCIENGNYAKAARIAAEVGQSSMWI R S E A K A 1 0 2 0 1 0 2 1 0 2 1 1 0 0 0 2 0 0 1 0 0 0 14 0 1596.7454 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4DZ41;B7Z926;Q9Y4Q3;B4DZC2;Q5CZ83 A0A024R4W4 890 903 BRD1;DKFZp434B094;DKFZp686F0325 Bromodomain-containing protein 1 yes no 2 0.022095 43.897 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1240200 0 1240200 0 0 0 1240200 0 1240200 11673 162 11991 30704 47828 47828 1 SELLLAEEPGFLEGEDGEDTAK VAEAEEEETSIKAARSELLLAEEPGFLEGE EPGFLEGEDGEDTAKICQADIVEAVDIASA R S E A K I 2 0 0 2 0 0 6 3 0 0 4 1 0 1 1 1 1 0 0 0 0 0 22 0 2348.0907 B0UZZ8;O15213;B4DNI0;A8K9A1;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 149 170 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 3.2294E-37 144.68 2 2 1.0858 1.0349 3.6435 4 Median 0.9523 1.0637 4.4336 2 0 Median 1.2295 1.0229 2.208 2 0 Median 205320000 95429000 109890000 119120000 56530000 62593000 86198000 38899000 47299000 11674 809 11992 30705;30706;30707;30708 47829;47830;47831;47832;47833;47834;47835 47834 7 SELLVEQGR LEKLNKESRLLNQEKSELLVEQGRLQLQAD LLNQEKSELLVEQGRLQLQADRHQEHIRAR K S E G R L 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1029.5455 Q92878;E7EN38;Q32P42;E7ESD9;A8K3I2 Q92878 344 352 RAD50 DNA repair protein RAD50 yes no 2 0.0034791 71.692 2 0.66432 0.70844 8.5578 2 Median 0.66432 0.70844 8.5578 2 0 Median NaN NaN NaN 0 0 Median 62544000 37572000 24972000 62544000 37572000 24972000 0 0 0 11675 1953 11993 30709;30710 47836;47837 47837 2 SELLVPGSQLILGPHESK VTENKISDQDLNRMRSELLVPGSQLILGPH LVPGSQLILGPHESKIPILLIQQPGKVTGE R S E S K I 0 0 0 0 0 1 2 2 1 1 4 1 0 0 2 3 0 0 0 1 0 0 18 0 1903.0415 Q96F88;Q99575 Q96F88 577 594 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2;3 1.0878E-05 56.951 3 4 0.59569 0.47934 23.191 7 Median 0.31728 0.33985 4.289 3 0 Plateau 0.63593 0.50528 4.8289 4 0 Median 116730000 81795000 34940000 80920000 60724000 20196000 35814000 21070000 14744000 11676 1965 11994 30711;30712;30713;30714;30715;30716;30717 47838;47839;47840;47841;47842;47843;47844;47845;47846;47847;47848 47841 11 SELSQDAEPAGSQETK ILLREFEERRSLRKRSELSQDAEPAGSQET ELSQDAEPAGSQETKDSGSQEVLSELRVLS R S E T K D 2 0 0 1 0 2 3 1 0 0 1 1 0 0 1 3 1 0 0 0 0 0 16 0 1675.7537 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 434 449 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 4.5328E-12 116.24 2 0.98903 0.99341 11.144 2 Median 0.98903 0.99341 11.144 2 0 Median NaN NaN NaN 0 0 Median 16611000 8678500 7933000 16611000 8678500 7933000 0 0 0 11677 2008 11995 30718;30719 47849;47850;47851;47852 47852 4 SELVANNVTLPAGEQR EFLEDPSVLTKDKLKSELVANNVTLPAGEQ ELVANNVTLPAGEQRKDVYVQLYLQHLTAR K S E Q R K 2 1 2 0 0 1 2 1 0 0 2 0 0 0 1 1 1 0 0 2 0 0 16 0 1696.8744 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;P42166 P42166 18 33 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2 4.9473E-81 255.54 2 2 1.0887 1.0683 11.479 4 Median 1.0377 1.1725 3.9222 2 0 Median 1.1345 0.9698 4.4358 2 0 Median 252140000 123470000 128680000 201100000 99236000 101860000 51043000 24229000 26814000 11678 334;1562 11996 30720;30721;30722;30723 47853;47854;47855;47856;47857;47858;47859;47860 47857 8 SELYFLIAR ______________________________ GLSELRSELYFLIARFLEDGPCQQAAQVLI R S E A R F 1 1 0 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 0 9 0 1110.6073 Q8WWQ0 Q8WWQ0 13 21 PHIP PH-interacting protein yes yes 2 0.0020795 77.058 2 2 1.0515 1.0436 19.49 4 Median 0.77499 0.87091 3.9677 2 0 Median 1.4395 1.2178 0.22446 2 0 Median 153630000 81846000 71785000 108880000 63001000 45876000 44754000 18845000 25910000 11679 1942 11997 30724;30725;30726;30727 47861;47862;47863;47864;47865;47866;47867;47868 47864 8 SEMEVQDAELK PMRITSGPFEPDLYKSEMEVQDAELKALLQ DLYKSEMEVQDAELKALLQSSASRKTQ___ K S E L K A 1 0 0 1 0 1 3 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 11 0 1277.5809 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08 A8K6Y1 345 355 PA2G4 Proliferation-associated protein 2G4 yes no 2 2.2934E-05 96.143 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13991000 0 13991000 13991000 0 13991000 0 0 0 11680 328 11998 30728;30729 47869;47870 47870 249 2 SEMTPEELQK ______________________________ LNKPKSEMTPEELQKREEEEFNTGPLSVLT K S E Q K R 0 0 0 0 0 1 3 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 10 0 1190.5489 P62316;K7ERG4 P62316 9 18 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 4.116E-08 107.69 2 1.6191 1.7923 NaN 1 Median 1.6191 1.7923 NaN 1 0 Median NaN NaN NaN 0 0 Median 66044000 16298000 49746000 66044000 16298000 49746000 0 0 0 11681 1645 11999 30730;30731 47871;47872;47873 47871 1426 3 SENEEFVEVGR FFIILEGSAAVLQRRSENEEFVEVGRLGPS LQRRSENEEFVEVGRLGPSDYFGMYEFPHN R S E G R L 0 1 1 0 0 0 4 1 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1293.5837 K7EM13;Q68DQ4;B2R5T5;P10644 K7EM13 111 121 PRKAR1A;DKFZp779L0468 cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 2 0.0061262 63.734 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11682 835 12000 30732 47874 47874 1 SENEPIENEAAK NAEFRQKDIFAMDDKSENEPIENEAAKYDL DDKSENEPIENEAAKYDLKYIGLDGNIACF K S E A K Y 2 0 2 0 0 0 4 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 12 0 1329.6048 A0A024R325;Q96I99;Q3ZCW5;E9PDQ8;B7Z2D5 A0A024R325 280 291 SUCLG2 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 1.9527E-08 117.02 2 1.9473 1.9668 NaN 1 Median 1.9473 1.9668 NaN 1 0 Median NaN NaN NaN 0 0 Median 12899000 2661900 10237000 12899000 2661900 10237000 0 0 0 11683 126 12001 30733;30734 47875;47876 47875 2 SENGLEFTSSGSANTETTK KGYGFGLIKLDLKTKSENGLEFTSSGSANT LEFTSSGSANTETTKVTGSLETKYRWTEYG K S E T K V 1 0 2 0 0 0 3 2 0 0 1 1 0 1 0 4 4 0 0 0 0 0 19 0 1958.8705 A0A1L1UHR1;P21796;B3KTS5;C9JI87 A0A1L1UHR1 35 53 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 2.0455E-93 211.75 3 1.7088 1.9971 4.9618 2 Median 1.7088 1.9971 4.9618 2 0 Median NaN NaN NaN 0 0 Median 556070000 210640000 345430000 556070000 210640000 345430000 0 0 0 11684 639 12002 30735;30736;30737 47877;47878;47879;47880;47881;47882;47883;47884;47885 47883 9 SENVDVGKPALGK APSIRRRSTRNTPAKSENVDVGKPALGKSI AKSENVDVGKPALGKSILVPNEELSMVMSS K S E G K S 1 0 1 1 0 0 1 2 0 0 1 2 0 0 1 1 0 0 0 2 0 0 13 1 1312.6987 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 2017 2029 AHCTF1 Protein ELYS yes no 2;3 0.0017644 90.685 1 2 2.0974 1.7823 0.21996 2 Median NaN NaN NaN 0 0 Median 2.0974 1.7823 0.21996 2 0 Median 27216000 11772000 15444000 4263100 4263100 0 22953000 7509300 15444000 11685 1945 12003 30738;30739;30740 47886;47887;47888 47886 3 SEPHSPGIPEIFR ILNRGHSSSSSKGIKSEPHSPGIPEIFRTA IKSEPHSPGIPEIFRTASQRCRDPPSNPVA K S E F R T 0 1 0 0 0 0 2 1 1 2 0 0 0 1 3 2 0 0 0 0 0 0 13 0 1464.7361 Q8ND82;Q9UJJ2 Q8ND82 76 88 ZNF280C Zinc finger protein 280C yes no 3 0.02075 18.413 1 1.7083 1.4397 NaN 1 Median NaN NaN NaN 0 0 Median 1.7083 1.4397 NaN 1 0 Median 4678800 1747900 2931000 0 0 0 4678800 1747900 2931000 11686 1924 12004 30741 47889 47889 1 SEPIPESNDGPVK FLQDYVDGNLKRYLKSEPIPESNDGPVKVV LKSEPIPESNDGPVKVVVAENFDEIVNNEN K S E V K V 0 0 1 1 0 0 2 1 0 1 0 1 0 0 3 2 0 0 0 1 0 0 13 0 1367.6569 B4DDM1;B3KQT9;B3KQT2;V9HVY3;P30101;B4DJ98 B4DDM1 141 153 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 2 0.0091343 53.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7708600 0 7708600 7708600 0 7708600 0 0 0 11687 930 12005 30742 47890 47890 1 SEPSGEINIDSSGETVGSGER RNSSAFSYQRQTSNRSEPSGEINIDSSGET INIDSSGETVGSGERCVMAMLRRRIRDEKT R S E E R C 0 1 1 1 0 0 4 4 0 2 0 0 0 0 1 5 1 0 0 1 0 0 21 0 2105.9349 P42695;G3V1A9;E9PKK4 P42695 520 540 NCAPD3 Condensin-2 complex subunit D3 yes no 2 2.9821E-08 74.789 3 1 1.2064 1.121 40.092 2 Median 0.83621 0.84429 NaN 1 0 Median 1.7404 1.4884 NaN 1 0 Median 16072000 6933800 9138100 10184000 4389100 5795000 5887800 2544700 3343100 11688 1565 12006 30743;30744;30745;30746 47891;47892;47893;47894;47895 47893 5 SEQDQAENEGEDSAVLMER KAHQRQLTPPEGSSKSEQDQAENEGEDSAV QAENEGEDSAVLMERLCKYIYAKDRTDRIR K S E E R L 2 1 1 2 0 2 5 1 0 0 1 0 1 0 0 2 0 0 0 1 0 0 19 0 2135.8913 A0A024QYX7;B3KNZ4;B4DRU0;B4DVU3;B4E2Z6;B4DDN4;B4DVQ5;A1KYQ7;A0A024QYU9;Q99613;B5ME19 A0A024QYX7 216 234 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.0001082 60.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11689 6 12007 30747 47896 47896 6 1 SEQEDEVLLVSSSR DREGFKKRAACLCFRSEQEDEVLLVSSSRY RSEQEDEVLLVSSSRYPDQWIVPGGGMEPE R S E S R Y 0 1 0 1 0 1 3 0 0 0 2 0 0 0 0 4 0 0 0 2 0 0 14 0 1576.758 B2RE29;A0A024RBG1;A0A024RBD0;Q9NZJ9 B2RE29 28 41 NUDT4 Diphosphoinositol polyphosphate phosphohydrolase 2 yes no 2 0.0028903 58.674 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3685000 0 3685000 3685000 0 3685000 0 0 0 11690 337 12008 30748;30749;30750 47897;47898;47899 47899 3 SEQEFSFDTPADR SESFKFVEQQSYKRKSEQEFSFDTPADRSG RKSEQEFSFDTPADRSGWTSASSWAVRKTL K S E D R S 1 1 0 2 0 1 2 0 0 0 0 0 0 2 1 2 1 0 0 0 0 0 13 0 1527.6478 B2RA91;F8VXG7;Q99590 B2RA91 812 824 SCAF11 Protein SCAF11 yes no 2 0.014039 37.613 2 1.164 1.0297 8.6165 2 Median NaN NaN NaN 0 0 Median 1.164 1.0297 8.6165 2 0 Median 4221000 2098300 2122700 0 0 0 4221000 2098300 2122700 11691 871 12009 30751;30752 47900;47901 47901 2 SEQLEELFSQVGPVK AGLTLFVGRLPPSARSEQLEELFSQVGPVK SEQLEELFSQVGPVKQCFVVTEKGSKACRG R S E V K Q 0 0 0 0 0 2 3 1 0 0 2 1 0 1 1 2 0 0 0 2 0 0 15 0 1688.8621 A0A024R753;Q9NW13;C9JE21;C9JAA9;A0A0S2Z5E5 A0A024R753 17 31 RBM28 RNA-binding protein 28 yes no 2 1.0077E-47 184.55 1 2 1.3058 1.119 2.784 3 Plateau 0.9961 1.119 NaN 1 0 Median 1.3219 1.0805 2.7063 2 0 Median 129760000 59628000 70132000 74299000 35495000 38804000 55461000 24133000 31328000 11692 214 12010 30753;30754;30755 47902;47903;47904;47905;47906 47903 5 SEQPSLVIQK QLTPKLTSSVLKCIRSEQPSLVIQKAAIQA LKCIRSEQPSLVIQKAAIQALRKMELSDEV R S E Q K A 0 0 0 0 0 2 1 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 10 0 1127.6186 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 513 522 yes yes 2 0.003957 88.819 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12432000 12432000 0 12432000 12432000 0 0 0 0 + 11693 1146 12011 30756 47907 47907 1 SEQPTLVTASK HEDCITALCFCNAEKSEQPTLVTASKDGYF NAEKSEQPTLVTASKDGYFKVWILTDDSDI K S E S K D 1 0 0 0 0 1 1 0 0 0 1 1 0 0 1 2 2 0 0 1 0 0 11 0 1159.6085 A8K330;Q8IWA0 A8K330 456 466 WDR75 WD repeat-containing protein 75 yes no 2 3.1396E-05 100.48 2 2 1.116 1.0612 4.2509 4 Median 0.98626 1.0842 0.0028766 2 0 Median 1.2627 1.015 3.2665 2 0 Median 134660000 66147000 68510000 94317000 47828000 46489000 40341000 18319000 22022000 11694 716 12012 30757;30758;30759;30760 47908;47909;47910;47911;47912;47913 47908 6 SEQSVAQLEEEK WLRDELANTQQKLQKSEQSVAQLEEEKKHL LQKSEQSVAQLEEEKKHLEFMNQLKKYDDD K S E E K K 1 0 0 0 0 2 4 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1375.6467 Q7Z5D5;Q7RTQ9;Q7RTQ7;G5E9S8;G3V2E7;B5BU63;F8W6L3;B4DGB3;Q7RTQ8;Q7RTQ2;G3V3H3;Q7RTQ1;Q7RTQ0;Q7RTQ4;G3V5R9;Q7RTP8;E7EVH7;B4DS14;Q07866;G3V2P7 Q7Z5D5 134 145 KNS2;KLC1 Kinesin light chain 1 yes no 2 0.0067098 59.84 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3072600 0 3072600 3072600 0 3072600 0 0 0 11695 972 12013 30761 47914 47914 1 SESDLEETEPVVIPR KKVKKRNPWSDDESKSESDLEETEPVVIPR SESDLEETEPVVIPRDSLLRRAAAERPKYT K S E P R D 0 1 0 1 0 0 4 0 0 1 1 0 0 0 2 2 1 0 0 2 0 0 15 0 1698.8312 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1314 1328 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 1.3111E-05 90.653 2 1.1443 0.96839 2.1336 2 Median NaN NaN NaN 0 0 Median 1.1443 0.96839 2.1336 2 0 Median 14751000 7070500 7680100 0 0 0 14751000 7070500 7680100 11696 1679 12014 30762;30763 47915;47916;47917 47915 3 SESFANYIDER INASLNQEKMNLIQKSESFANYIDEREKSI LIQKSESFANYIDEREKSISELSDQYKQEK K S E E R E 1 1 1 1 0 0 2 0 0 1 0 0 0 1 0 2 0 0 1 0 0 0 11 0 1329.5837 P49454 P49454 997 1007 CENPF Centromere protein F yes yes 2 0.00050231 90.108 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5286100 0 5286100 5286100 0 5286100 0 0 0 11697 1581 12015 30764;30765;30766 47918;47919;47920;47921 47921 4 SESHTDLTFSR IAKRDIEQIIRNYARSESHTDLTFSRELTN NYARSESHTDLTFSRELTNDERKQIHQIAQ R S E S R E 0 1 0 1 0 0 1 0 1 0 1 0 0 1 0 3 2 0 0 0 0 0 11 0 1278.584 Q6NUN2;A3F769;O15226;A3F768;A2I829 Q6NUN2 616 626 NKRF;NRF NF-kappa-B-repressing factor yes no 2 3.2333E-06 98.048 3 0.82113 0.82097 NaN 1 Median 0.82113 0.82097 NaN 1 0 Median NaN NaN NaN 0 0 Median 14773000 11176000 3597200 14773000 11176000 3597200 0 0 0 11698 655 12016 30767;30768;30769 47922;47923;47924 47923 3 SESQEEMLQVFNVETHTSK EEKEETIPKAVSFNKSESQEEMLQVFNVET EEMLQVFNVETHTSKQLRHFKFLSVSFMSQ K S E S K Q 0 0 1 0 0 2 4 0 1 0 1 1 1 1 0 3 2 0 0 2 0 0 19 0 2222.0161 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1490 1508 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 1.1634E-06 80.975 2 1.2485 1.3585 4.6057 2 Median 1.2485 1.3585 4.6057 2 0 Median NaN NaN NaN 0 0 Median 82145000 39820000 42324000 82145000 39820000 42324000 0 0 0 11699 897 12017 30770;30771 47925;47926;47927 47927 716 3 SESSDFEVVPK IPSGPLRQREESETRSESSDFEVVPKRRRQ SETRSESSDFEVVPKRRRQRGSETDTDSEI R S E P K R 0 0 0 1 0 0 2 0 0 0 0 1 0 1 1 3 0 0 0 2 0 0 11 0 1222.5717 E7EPN9;Q9Y520;B4DM27 E7EPN9 1248 1258 PRRC2C Protein PRRC2C yes no 2 0.0065898 63.184 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11700 1219 12018 30772 47928 47928 1 SESSTSAFSTPTR SSPERKKRILKPQLKSESSTSAFSTPTRSI LKSESSTSAFSTPTRSIPPRHNAAQINGKT K S E T R S 1 1 0 0 0 0 1 0 0 0 0 0 0 1 1 5 3 0 0 0 0 0 13 0 1356.6157 Q8WWQ0;Q9NWP3 Q8WWQ0 1471 1483 PHIP PH-interacting protein yes no 2 1.8389E-13 130.09 2 2 1.1265 1.1131 20.158 4 Median 0.85379 0.94159 6.7251 2 0 Median 1.5318 1.3172 6.8549 2 0 Median 158100000 74378000 83720000 98189000 50388000 47801000 59910000 23990000 35919000 11701 1942 12019 30773;30774;30775;30776 47929;47930;47931;47932;47933;47934;47935;47936;47937;47938 47930 10 SETAPAAPAAAPPAEK ______________________________ ETAPAAPAAAPPAEKAPVKKKAAKKAGGTP M S E E K A 7 0 0 0 0 0 2 0 0 0 0 1 0 0 4 1 1 0 0 0 0 0 16 0 1477.7413 P16403 P16403 2 17 HIST1H1C Histone H1.2 yes yes 2 4.9771E-18 135.6 11 5 0.95655 1.0888 45.922 14 Median 1.1893 1.3562 15.391 9 0 Median 0.62346 0.51483 3.6789 5 0 Median 3444900000 1756500000 1688500000 3177900000 1592000000 1585900000 267060000 164480000 102580000 11702 1490 12020;12021 30777;30778;30779;30780;30781;30782;30783;30784;30785;30786;30787;30788;30789;30790;30791;30792 47939;47940;47941;47942;47943;47944;47945;47946;47947;47948;47949;47950;47951;47952;47953;47954;47955;47956;47957;47958;47959;47960;47961;47962;47963;47964;47965;47966 47944 28 SETAPAAPAAPAPAEK ______________________________ ETAPAAPAAPAPAEKTPVKKKARKSAGAAK M S E E K T 7 0 0 0 0 0 2 0 0 0 0 1 0 0 4 1 1 0 0 0 0 0 16 0 1477.7413 Q4VB24;B2R984;A3R0T8;P10412;A3R0T7 Q4VB24 2 17 HIST1H1E Histone H1.4 yes no 2 1.7862E-24 138.24 4 3 0.69833 0.70452 42.274 6 Median 0.81917 0.97642 20.801 3 0 Median 0.62034 0.50462 3.9481 3 0 Median 1841300000 1008900000 832420000 1571000000 844960000 726010000 270350000 163940000 106410000 11703 656 12022;12023 30793;30794;30795;30796;30797;30798;30799 47967;47968;47969;47970;47971;47972;47973;47974;47975 47974 9 SETAPAAPAAPAPAEKTPVK ______________________________ AAPAAPAPAEKTPVKKKARKSAGAAKRKAS M S E V K K 7 0 0 0 0 0 2 0 0 0 0 2 0 0 5 1 2 0 0 1 0 0 20 1 1903.0051 Q4VB24;B2R984;A3R0T8;P10412;A3R0T7 Q4VB24 2 21 HIST1H1E Histone H1.4 yes no 2 0.00017428 62.924 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1915500 1915500 0 1915500 1915500 0 0 0 0 11704 656 12024 30800;30801 47976;47977 47977 2 SETAPAETATPAPVEK ______________________________ ETAPAETATPAPVEKSPAKKKATKKAAGAG M S E E K S 4 0 0 0 0 0 3 0 0 0 0 1 0 0 3 1 3 0 0 1 0 0 16 0 1597.7835 P16401;Q14463 P16401 2 17 HIST1H1B Histone H1.5 yes no 2 1.7333E-34 162.38 11 8 0.59499 0.74025 25.078 16 Linear 0.55259 0.71025 9.3333 9 0 Linear 0.48722 0.40055 8.5732 7 0 Median 4906400000 3168600000 1737800000 4284100000 2760500000 1523600000 622270000 408040000 214240000 11705 1489 12025;12026 30802;30803;30804;30805;30806;30807;30808;30809;30810;30811;30812;30813;30814;30815;30816;30817;30818;30819;30820 47978;47979;47980;47981;47982;47983;47984;47985;47986;47987;47988;47989;47990;47991;47992;47993;47994;47995;47996;47997;47998;47999;48000;48001;48002;48003;48004;48005;48006;48007;48008;48009;48010;48011;48012;48013;48014;48015;48016;48017;48018;48019;48020;48021;48022;48023;48024 48004 47 SEVCFGK ITKRVKAKKNAAPFRSEVCFGKEGLWKLLG KKNAAPFRSEVCFGKEGLWKLLGGFQETCS R S E G K E 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 1 0 0 0 1 0 0 7 0 825.36909 A0A024R2Z6;Q9BVP2 A0A024R2Z6 219 225 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.026656 75.311 1 0.73349 0.76852 NaN 1 Median 0.73349 0.76852 NaN 1 0 Median NaN NaN NaN 0 0 Median 30195000 17948000 12247000 30195000 17948000 12247000 0 0 0 11706 125 12027 30821 48025;48026 48026 2 SEVEMEGPEECLGR RLRRLKTVLAKRTGRSEVEMEGPEECLGRR RSEVEMEGPEECLGRRRSSRIMEETSGMEE R S E G R R 0 1 0 0 1 0 5 2 0 0 1 0 1 0 1 1 0 0 0 1 0 0 14 0 1620.676 J3QK86;J3KPG5;F8VU39;Q9UIF9 J3QK86 995 1008 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 6.8176E-05 78.342 2 1.1199 1.1182 NaN 1 Median 1.1199 1.1182 NaN 1 0 Median NaN NaN NaN 0 0 Median 7000400 2340600 4659800 7000400 2340600 4659800 0 0 0 11707 1260 12028 30822;30823 48027;48028;48029;48030 48029 966 4 SEVLAEESIVCLQK ______________________________ RSEVLAEESIVCLQKALNHLREIWELIGIP R S E Q K A 1 0 0 0 1 1 3 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 14 0 1603.8127 A0A024RC67;O43663;H0YM42;H0YLA0 A0A024RC67 4 17 PRC1 Protein regulator of cytokinesis 1 yes no 2 1.7714E-10 124.67 2 2 1.1001 0.88344 11.304 2 Median NaN NaN NaN 0 0 Median 1.1001 0.88344 11.304 2 0 Median 45656000 23055000 22601000 21944000 11361000 10584000 23712000 11695000 12018000 11708 353 12029 30824;30825;30826;30827 48031;48032;48033;48034;48035;48036;48037 48035 7 SEVPEDLAGFIELFQTPSHTK SLTGSKRQLRTPKGKSEVPEDLAGFIELFQ LAGFIELFQTPSHTKESMTNEKTTKVSYRA K S E T K E 1 0 0 1 0 1 3 1 1 1 2 1 0 2 2 2 2 0 0 1 0 0 21 0 2344.1587 P46013 P46013 1704 1724 MKI67 Antigen KI-67 yes yes 2;3 8.6646E-09 57.009 3 1 1.8008 2.0404 28.323 3 Median 1.7788 2.0178 1.5724 2 0 Median 3.8139 3.2944 NaN 1 0 Median 447960000 133070000 314890000 233890000 86873000 147020000 214070000 46200000 167870000 11709 1569 12030 30828;30829;30830;30831 48038;48039;48040;48041;48042;48043;48044;48045 48038 8 SEVQQPVHPK RSTPAEDDSRDSQVKSEVQQPVHPKPLSPD DSQVKSEVQQPVHPKPLSPDSRASSLSESS K S E P K P 0 0 0 0 0 2 1 0 1 0 0 1 0 0 2 1 0 0 0 2 0 0 10 0 1147.5986 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2;F8VRN8 F8VQE1 190 199 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 4.9576E-16 151.48 3 2 2.3771 2.6568 24.425 5 Median 2.3314 2.6067 6.4759 3 0 Plateau 4.8635 3.8382 4.9577 2 0 Median 113640000 33375000 80261000 107850000 32382000 75467000 5787500 992800 4794700 11710 1010 12031 30832;30833;30834;30835;30836 48046;48047;48048;48049;48050;48051;48052;48053 48048 8 SEVSSDEDIQFR SDMDSILASLKLPPKSEVSSDEDIQFRLVT PPKSEVSSDEDIQFRLVTRFVNEAVMCLQE K S E F R L 0 1 0 2 0 1 2 0 0 1 0 0 0 1 0 3 0 0 0 1 0 0 12 0 1410.6263 E9KL44;P40939;B4DRH6;B4DDZ5;H0YFD6;V9GZL3 E9KL44 665 676 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 3.5535E-06 111.06 2 2 1.0635 0.92224 28.846 4 Linear 1.055 1.1923 3.9428 2 0 Median 0.86807 0.7248 1.6851 2 0 Median 131830000 64803000 67028000 113550000 55450000 58103000 18278000 9353100 8924800 11711 1228 12032 30837;30838;30839;30840 48054;48055;48056;48057;48058;48059;48060;48061;48062 48057 9 SEVTELRR NKEVASNSELVQSSRSEVTELRRVLQGLEI ELVQSSRSEVTELRRVLQGLEIELQSQLSM R S E R R V 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 8 1 988.53016 CON__P08779;P08779;Q16195;K7ENW6 CON__P08779 331 338 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 2 0.001548 121.99 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102020000 102020000 0 92266000 92266000 0 9749800 9749800 0 + 11712 1159 12033 30841;30842;30843;30844 48063;48064;48065;48066 48064 4 SEWGSLLEELVAEGK VIGGDGSLTGANIFRSEWGSLLEELVAEGK SEWGSLLEELVAEGKISETTARTYSHLNIA R S E G K I 1 0 0 0 0 0 4 2 0 0 3 1 0 0 0 2 0 1 0 1 0 0 15 0 1645.8199 P17858;B4E108 P17858 130 144 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 2 1.0667E-22 149.23 2 1.3044 1.3051 1.5378 2 Median 1.3044 1.3051 1.5378 2 0 Median NaN NaN NaN 0 0 Median 22324000 10261000 12062000 22324000 10261000 12062000 0 0 0 11713 1495 12034 30845;30846 48067;48068;48069;48070;48071 48071 5 SEWNTVER EYKVFVRKLRKAYGKSEWNTVERLKDNKPN LRKAYGKSEWNTVERLKDNKPNYKLDHIIK K S E E R L 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 8 0 1019.4672 B5MCF9;B2RDF2;O00541 B5MCF9 99 106 PES1 Pescadillo homolog yes no 2 0.012108 68.383 1 0.8679 0.87062 NaN 1 Median 0.8679 0.87062 NaN 1 0 Median NaN NaN NaN 0 0 Median 17559000 10168000 7390900 17559000 10168000 7390900 0 0 0 11714 886 12035 30847 48072 48072 1 SEWSDLLSDLQK VIGGDGSLTGADTFRSEWSDLLSDLQKAGK TFRSEWSDLLSDLQKAGKITDEEATKSSYL R S E Q K A 0 0 0 2 0 1 1 0 0 0 3 1 0 0 0 3 0 1 0 0 0 0 12 0 1419.6882 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;F8VX13;F8VNX2;F8VZQ1 A0A024R0Y5 130 141 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 1.5289E-08 113.93 2 2 2.0874 1.6884 8.3661 2 Median NaN NaN NaN 0 0 Median 2.0874 1.6884 8.3661 2 0 Median 34221000 1959800 32261000 29088000 0 29088000 5132700 1959800 3172900 11715 61 12036 30848;30849;30850;30851 48073;48074;48075;48076;48077;48078 48073 6 SEYSSGMEADIAK HKKTQSKHSLAEILRSEYSSGMEADIAKVK LRSEYSSGMEADIAKVKKQNAPGEPGGRPL R S E A K V 2 0 0 1 0 0 2 1 0 1 0 1 1 0 0 3 0 0 1 0 0 0 13 0 1386.5973 F8WAJ0;Q9H8H2 F8WAJ0 684 696 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 2 0.0027494 53.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24567000 0 24567000 24567000 0 24567000 0 0 0 11716 1268 12037 30852 48079 48079 974 1 SEYSSGMEADVAK HKKTQSKHSLAEILRSEYSSGMEADVAKVK LRSEYSSGMEADVAKVKKQNAPGEPGGRPL R S E A K V 2 0 0 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 1 1 0 0 13 0 1372.5817 B4DYZ1 B4DYZ1 660 672 yes yes 2 0.00030931 78.342 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1234400 0 1234400 1234400 0 1234400 0 0 0 11717 1053 12038 30853;30854 48080;48081 48080 823 2 SEYSVHSSLASK DKESNMERRVITISKSEYSVHSSLASKVDV ISKSEYSVHSSLASKVDVEQVVMYCKEKLI K S E S K V 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 5 0 0 1 1 0 0 12 0 1293.6201 A0JLU2;B4DYG2;O43683 A0JLU2 217 228 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 2.7587E-09 117.52 1 1 1.0985 0.90996 NaN 1 Median NaN NaN NaN 0 0 Median 1.0985 0.90996 NaN 1 0 Median 11294000 837710 10456000 9573200 0 9573200 1720300 837710 882630 11718 641 12039 30855;30856 48082;48083 48082 2 SFAANGIQAHPESSTGSDAR KASIQAASAESSGQKSFAANGIQAHPESST GIQAHPESSTGSDARTTAESQTTGKQSLIP K S F A R T 4 1 1 1 0 1 1 2 1 1 0 0 0 1 1 4 1 0 0 0 0 0 20 0 2001.914 Q5QJE6;J3KP30;B7Z854 Q5QJE6 25 44 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2;3 1.3863E-18 104.03 5 2 1.3193 1.2166 15.351 4 Median 1.0334 1.1269 25.353 2 0 Median 1.4991 1.2166 2.346 2 0 Median 114200000 52622000 61581000 87808000 43811000 43996000 26396000 8811000 17585000 11719 1813 12040 30857;30858;30859;30860;30861;30862;30863 48084;48085;48086;48087;48088;48089;48090;48091;48092;48093;48094;48095 48088 12 SFAGAVSPQEEEEFRR IRVLGIQVDTDGSGRSFAGAVSPQEEEEFR FAGAVSPQEEEEFRRLAALPNVYEVISKSI R S F R R L 2 2 0 0 0 1 4 1 0 0 0 0 0 2 1 2 0 0 0 1 0 0 16 1 1837.8595 B1AHB1;Q53FG5;B1AHB0;A8K521;P33992;B4DQ39;B4DVK5 B1AHB1 266 281 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 3 8.4114E-05 47.545 2 2 1.1577 1.1716 46.628 4 Median 1.5666 1.7355 1.8308 2 0 Median 0.86852 0.77511 4.6765 2 0 Median 64361000 27817000 36544000 56694000 23832000 32861000 7667600 3984700 3682900 11720 745 12041 30864;30865;30866;30867 48096;48097;48098;48099;48100;48101;48102 48097 7 SFAGNLNTYK MDERRFQDAVRLRGRSFAGNLNTYKRLAIK RLRGRSFAGNLNTYKRLAIKLPDDQIPKTN R S F Y K R 1 0 2 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 1 0 0 0 10 0 1113.5455 Q01813;Q8WTZ9;O14943;B1APP6 Q01813 386 395 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.00062918 83.783 1 2.8347 3.0555 NaN 1 Median 2.8347 3.0555 NaN 1 0 Median NaN NaN NaN 0 0 Median 33981000 9680000 24301000 33981000 9680000 24301000 0 0 0 11721 1677 12042 30868 48103 48103 1 SFANEEGEAQK SQVAIEALSAMPTVRSFANEEGEAQKFREK PTVRSFANEEGEAQKFREKLQEIKTLNQKE R S F Q K F 2 0 1 0 0 1 3 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1208.5309 X5CKB3;B2R9F3;A0A140T9T7;A0A0S2Z5A6;Q03518;B7Z7P4;Q6QWC1;Q6QWC0 X5CKB3 379 389 TAP1 Antigen peptide transporter 1 yes no 2 3.1989E-05 100.25 1 0.97017 0.95945 NaN 1 Median 0.97017 0.95945 NaN 1 0 Median NaN NaN NaN 0 0 Median 8356400 4318900 4037600 8356400 4318900 4037600 0 0 0 11722 578 12043 30869 48104;48105 48104 2 SFANTLVDVCAYAGSGNVLK EAILAALEVVSEPFRSFANTLVDVCAYAGS LVDVCAYAGSGNVLKVQQLLHICSEHFDSK R S F L K V 3 0 2 1 1 0 0 2 0 0 2 1 0 1 0 2 1 0 1 3 0 0 20 0 2085.0201 Q59EG8;Q13200;B4DM22;Q9NSM5;Q13041;H7C1H2 Q59EG8 594 613 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.00077194 49.298 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4312800 0 4312800 4312800 0 4312800 0 0 0 11723 1707 12044 30870 48106 48106 1 SFCISTLANTK GPAAGSSDEPGKRRKSFCISTLANTKATSQ KRRKSFCISTLANTKATSQFKGYRRRSSLN K S F T K A 1 0 1 0 1 0 0 0 0 1 1 1 0 1 0 2 2 0 0 0 0 0 11 0 1240.6122 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 962 972 CDCA2 Cell division cycle-associated protein 2 yes no 2 0.015285 46.406 2 1.688 1.3521 8.9464 2 Median NaN NaN NaN 0 0 Median 1.688 1.3521 8.9464 2 0 Median 8574700 3348300 5226400 0 0 0 8574700 3348300 5226400 11724 1233 12045 30871;30872 48107;48108 48107 2 SFCSEGCVLLYK EKLLHEKLRFSGVEKSFCSEGCVLLYKQDF VEKSFCSEGCVLLYKQDFTKKLGLCCITCT K S F Y K Q 0 0 0 0 2 0 1 1 0 0 2 1 0 1 0 2 0 0 1 1 0 0 12 0 1461.6632 A6NHB5;Q14202;A6NHN7 A6NHB5 656 667 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.00059524 68.657 1 1.938 1.6067 NaN 1 Median NaN NaN NaN 0 0 Median 1.938 1.6067 NaN 1 0 Median 1816100 601690 1214400 0 0 0 1816100 601690 1214400 11725 681 12046 30873 48109 48109 1 SFDFEIETK EISFVNFARGTTTTRSFDFEIETKQGTQYT GTTTTRSFDFEIETKQGTQYTFSSIEREEY R S F T K Q 0 0 0 1 0 0 2 0 0 1 0 1 0 2 0 1 1 0 0 0 0 0 9 0 1114.5183 A0A024R4Z6;Q08945 A0A024R4Z6 388 396 SSRP1 FACT complex subunit SSRP1 yes no 2 0.00056832 97.431 2 2 0.85036 0.83074 4.4963 4 Median 0.73573 0.87009 3.3137 2 0 Median 0.96559 0.8109 0.1876 2 0 Median 1153900000 662100000 491830000 1051700000 611160000 440510000 102260000 50942000 51313000 11726 167 12047 30874;30875;30876;30877 48110;48111;48112;48113;48114;48115;48116;48117 48111 8 SFDLIHSPHGELK EIQRVTNIKTSAKIKSFDLIHSPHGELKAV IKSFDLIHSPHGELKAVFLLQNNLVELYSL K S F L K A 0 0 0 1 0 0 1 1 2 1 2 1 0 1 1 2 0 0 0 0 0 0 13 0 1478.7518 Q5TDG3;Q9UNX4;B3KMW5 Q5TDG3 367 379 WDR3 WD repeat-containing protein 3 yes no 3 4.4456E-05 66.215 2 1.2818 1.0278 2.7803 2 Median NaN NaN NaN 0 0 Median 1.2818 1.0278 2.7803 2 0 Median 35089000 15996000 19093000 0 0 0 35089000 15996000 19093000 11727 1827 12048 30878;30879 48118;48119;48120;48121 48118 4 SFDVNKPGCEVDDLK PPRDFTSEPRLIVIRSFDVNKPGCEVDDLK SFDVNKPGCEVDDLKGGVAGGSILKGVLKV R S F L K G 0 0 1 3 1 0 1 1 0 0 1 2 0 1 1 1 0 0 0 2 0 0 15 1 1721.7931 P41091;Q2VIR3;F8W810 P41091 261 275 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 0.0015929 34.612 1 1 1.4698 1.4661 67.936 2 Median 2.0747 2.3702 NaN 1 0 Median 1.0413 0.90683 NaN 1 0 Median 17121000 5852200 11269000 14659000 4573100 10086000 2461800 1279200 1182700 11728 1559 12049 30880;30881 48122;48123;48124 48122 3 SFDYNYR RSRSRSYERRRSRSRSFDYNYRRSYSPRNR ERRRSRSRSFDYNYRRSYSPRNRPTGRPRR R S F Y R R 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 7 0 963.40865 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;B3KNY6 Q5JRI1 133 139 SRSF10 Serine/arginine-rich splicing factor 10 yes no 2 0.032098 66.087 1 1.2587 1.3952 NaN 1 Median 1.2587 1.3952 NaN 1 0 Median NaN NaN NaN 0 0 Median 65405000 28752000 36653000 65405000 28752000 36653000 0 0 0 11729 574 12050 30882 48125;48126 48125 2 SFEAPATINSASLHPEK RSIAFHSAVSLDPIKSFEAPATINSASLHP EAPATINSASLHPEKEFLVAGGEDFKLYKY K S F E K E 3 0 1 0 0 0 2 0 1 1 1 1 0 1 2 3 1 0 0 0 0 0 17 0 1797.8897 Q9Y3F4;B0AZV0 Q9Y3F4 219 235 STRAP Serine-threonine kinase receptor-associated protein yes no 2;3 6.7491E-09 94.122 4 1 3.6975 4.0403 31.708 3 Plateau 3.5609 3.7627 13.943 2 0 Median 2.7367 2.2325 NaN 1 0 Median 90244000 15794000 74450000 84232000 14246000 69985000 6012300 1547500 4464800 11730 2136 12051 30883;30884;30885;30886;30887 48127;48128;48129;48130;48131;48132;48133 48132 7 SFEDPPNHAR PNRFYFLEAYNAKSKSFEDPPNHARSPGNK NAKSKSFEDPPNHARSPGNKGKGKGKGKGK K S F A R S 1 1 1 1 0 0 1 0 1 0 0 0 0 1 2 1 0 0 0 0 0 0 10 0 1168.5261 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0 A0A024R7E3 1157 1166 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.01936 47.082 1 0.52895 0.52834 NaN 1 Median 0.52895 0.52834 NaN 1 0 Median NaN NaN NaN 0 0 Median 16823000 6743100 10080000 16823000 6743100 10080000 0 0 0 11731 222 12052 30888 48134 48134 1 SFEQISANITK QGGSKLGTKRTLPKKSFEQISANITKFNIQ LPKKSFEQISANITKFNIQGLVIIGGFEAY K S F T K F 1 0 1 0 0 1 1 0 0 2 0 1 0 1 0 2 1 0 0 0 0 0 11 0 1236.635 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9;F8VP00 A0A024R0Y5 477 487 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 2.6146E-05 102.52 2 2.4553 2.6366 3.2902 2 Median 2.4553 2.6366 3.2902 2 0 Median NaN NaN NaN 0 0 Median 72491000 20807000 51683000 72491000 20807000 51683000 0 0 0 11732 61 12053 30889;30890 48135;48136;48137 48136 3 SFFDNISSELK EEDLLGPNCYYDKSKSFFDNISSELKT___ DKSKSFFDNISSELKT______________ K S F L K T 0 0 1 1 0 0 1 0 0 1 1 1 0 2 0 3 0 0 0 0 0 0 11 0 1285.619 Q5TBP9;Q9BX40 Q5TBP9 237 247 LSM14B Protein LSM14 homolog B yes no 2 0.024585 51.445 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11733 1825 12054 30891 48138 48138 1 SFFQIMFK GPLSPYTIEFLRHLKSFFQIMFKIETKPCG EFLRHLKSFFQIMFKIETKPCGEELKGGDK K S F F K I 0 0 0 0 0 1 0 0 0 1 0 1 1 3 0 1 0 0 0 0 0 0 8 0 1046.5259 Q9Y2P8;Q5VZU3 Q9Y2P8 333 340 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 0.012153 55.441 2 1.6557 1.6446 8.5625 2 Median 1.6557 1.6446 8.5625 2 0 Median NaN NaN NaN 0 0 Median 23732000 8040500 15691000 23732000 8040500 15691000 0 0 0 11734 2125 12055 30892;30893 48139;48140 48139 1952 2 SFGAEEHEVCR GQVVREAVGGLQTVRSFGAEEHEVCRYKEA QTVRSFGAEEHEVCRYKEALEQCRQLYWRR R S F C R Y 1 1 0 0 1 0 3 1 1 0 0 0 0 1 0 1 0 0 0 1 0 0 11 0 1319.5564 Q9UMW6;Q9UQ60;Q5JNW1;A0A0G2JLV0;A0A087WYD6;X5CMH5;Q59H06;Q03519;Q9H4M2;Q9UP03;A0A140T9S0 Q9UMW6 29 39 TAP2-G;TAP2;ABCB3 Antigen peptide transporter 2 no no 2 9.7131E-05 93.096 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5716600 0 5716600 5716600 0 5716600 0 0 0 11735 433 12056 30894 48141 48141 1 SFGGEVSWDK LNREVPREALAFIIRSFGGEVSWDKSLCIG AFIIRSFGGEVSWDKSLCIGATYDVTDSRI R S F D K S 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 2 0 1 0 1 0 0 10 0 1110.4982 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 332 341 PES1 Pescadillo homolog yes no 2 0.0025324 68.657 2 0.77528 0.81067 5.9474 2 Median 0.77528 0.81067 5.9474 2 0 Median NaN NaN NaN 0 0 Median 64315000 34547000 29768000 64315000 34547000 29768000 0 0 0 11736 886 12057 30895;30896 48142;48143;48144;48145 48143 4 SFGGGTGSGFTSLLMER LAEQCGGLQGFLIFRSFGGGTGSGFTSLLM GGGTGSGFTSLLMERLTGEYSRKTKLEFSV R S F E R L 0 1 0 0 0 0 1 5 0 0 2 0 1 2 0 3 2 0 0 0 0 0 17 0 1702.7985 A6NHL2 A6NHL2 147 163 TUBAL3 Tubulin alpha chain-like 3 yes yes 2 3.9049E-05 62.042 1 2.9828 2.9253 NaN 1 Median 2.9828 2.9253 NaN 1 0 Median NaN NaN NaN 0 0 Median 13919000 3991200 9927700 13919000 3991200 9927700 0 0 0 11737 682 12058 30897 48146 48146 530 1 SFGSAQEFAWAHDSSEYAIR DGEYIIYTAMALRNKSFGSAQEFAWAHDSS QEFAWAHDSSEYAIRESNSIVKIFKNFKEK K S F I R E 4 1 0 1 0 1 2 1 1 1 0 0 0 2 0 4 0 1 1 0 0 0 20 0 2258.0029 P35606;H0Y938 P35606 387 406 COPB2 Coatomer subunit beta yes no 3 0.0063273 33.707 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4360300 0 4360300 4360300 0 4360300 0 0 0 11738 1545 12059 30898 48147;48148 48147 2 SFGSTCQLSEK TFDSQTKENMTLQPKSFGSTCQLSEKFIKA LQPKSFGSTCQLSEKFIKAAIGCGIVESIL K S F E K F 0 0 0 0 1 1 1 1 0 0 1 1 0 1 0 3 1 0 0 0 0 0 11 0 1242.5551 P11388 P11388 387 397 TOP2A DNA topoisomerase 2-alpha yes yes 2 7.4055E-06 109.83 2 2 0.9561 0.97471 19.786 4 Median 0.70241 0.82956 0.16176 2 0 Median 1.338 1.1673 2.8517 2 0 Median 1562300000 840500000 721750000 1087600000 634480000 453160000 474620000 206030000 268590000 11739 1471 12060 30899;30900;30901;30902 48149;48150;48151;48152;48153;48154;48155;48156;48157;48158;48159;48160;48161 48153 13 SFHPEQDAGK IFQVDLFTWPGQRERSFHPEQDAGKVFKGH GQRERSFHPEQDAGKVFKGHR_________ R S F G K V 1 0 0 1 0 1 1 1 1 0 0 1 0 1 1 1 0 0 0 0 0 0 10 0 1114.5043 K7EML4;U3KQC1;K7EIR0;A0A0A0MQU0;Q9BV38 K7EML4 253 262 WDR18 WD repeat-containing protein 18 yes no 2 0.0030553 66.27 1 1.4969 1.5518 NaN 1 Median 1.4969 1.5518 NaN 1 0 Median NaN NaN NaN 0 0 Median 4100900 1652300 2448500 4100900 1652300 2448500 0 0 0 11740 463 12061 30903 48162;48163 48163 2 SFHTYDVQK SALKRRFYVTTCVGKSFHTYDVQKLSLVAV TTCVGKSFHTYDVQKLSLVAVSNSVPQDIC K S F Q K L 0 0 0 1 0 1 0 0 1 0 0 1 0 1 0 1 1 0 1 1 0 0 9 0 1123.5298 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 49 57 WDR36 WD repeat-containing protein 36 yes no 2 1.3255E-25 186.76 2 2 1.0714 1.0321 2.8475 4 Median 0.92457 1.0427 2.0561 2 0 Median 1.2561 1.0122 3.3571 2 0 Median 249270000 129110000 120150000 204040000 108890000 95146000 45230000 20222000 25007000 11741 486 12062 30904;30905;30906;30907 48164;48165;48166;48167;48168;48169;48170 48165 7 SFIAAPCQIITNTSTLLK KEKRNKNLAEIGKRRSFIAAPCQIITNTST AAPCQIITNTSTLLKNYQDNNKMLVLALEN R S F L K N 2 0 1 0 1 1 0 0 0 3 2 1 0 1 1 2 3 0 0 0 0 0 18 0 1977.0605 B5BUA4;Q5FBB7;A0A024R2J4;F8WB17 B5BUA4 38 55 SGOL1 Shugoshin-like 1 yes no 2 7.3156E-06 102.66 2 0.86593 0.8739 5.3256 2 Median 0.86593 0.8739 5.3256 2 0 Median NaN NaN NaN 0 0 Median 27590000 15044000 12546000 27590000 15044000 12546000 0 0 0 11742 1075 12063 30908;30909 48171;48172;48173;48174;48175 48175 5 SFIPSLVEK DVMIHPVTNRPADKRSFIPSLVEKEKVSRM RPADKRSFIPSLVEKEKVSRMVHAIKMGWI R S F E K E 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 2 0 0 0 1 0 0 9 0 1018.5699 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9;A0A075B729 Q14137 245 253 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.045667 48.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26995000 26995000 0 26995000 26995000 0 0 0 0 11743 1726 12064 30910 48176 48176 1 SFITTDVNPYYDSFVR IQDLKRMGLKVDWRRSFITTDVNPYYDSFV FITTDVNPYYDSFVRWQFLTLRERNKIKFG R S F V R W 0 1 1 2 0 0 0 0 0 1 0 0 0 2 1 2 2 0 2 2 0 0 16 0 1922.905 B4E266;B4DER1;B2RCM2;Q9P2J5;Q6NVI4 B4E266 158 173 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 4.0359E-12 117.23 2 2 0.93971 0.86438 39.267 4 Median 1.2516 1.2694 17.753 2 0 Median 0.78262 0.65852 1.8798 2 0 Median 48472000 26121000 22351000 31828000 16334000 15494000 16644000 9787100 6856800 11744 883 12065 30911;30912;30913;30914 48177;48178;48179;48180;48181;48182;48183;48184 48177 8 SFLEFAEDVIQVPR FHIYGEDQDAVKKARSFLEFAEDVIQVPRN RSFLEFAEDVIQVPRNLVGKVIGKNGKLIQ R S F P R N 1 1 0 1 0 1 2 0 0 1 1 0 0 2 1 1 0 0 0 2 0 0 14 0 1648.8461 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WWR6 X5DQX7 277 290 FMR1 Fragile X mental retardation protein 1 yes no 2 3.0373E-14 128.17 2 1.2303 1.2977 2.6277 2 Median 1.2303 1.2977 2.6277 2 0 Median NaN NaN NaN 0 0 Median 65716000 27224000 38491000 65716000 27224000 38491000 0 0 0 11745 1689 12066 30915;30916 48185;48186;48187;48188;48189 48187 5 SFLLDLLNATGK NITQKVVWVEESDKRSFLLDLLNATGKDSL DKRSFLLDLLNATGKDSLTLVFVETKKGAD R S F G K D 1 0 1 1 0 0 0 1 0 0 4 1 0 1 0 1 1 0 0 0 0 0 12 0 1290.7184 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1 A0A0D9SFB3 429 440 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 0.0010164 73.067 3 1.4841 1.5686 NaN 1 Median 1.4841 1.5686 NaN 1 0 Median NaN NaN NaN 0 0 Median 47507000 26039000 21469000 47507000 26039000 21469000 0 0 0 11746 522 12067 30917;30918;30919 48190;48191;48192 48191 2 SFLVASVLPGPDGNINSPTR EVLGVIGDCPELVQRSFLVASVLPGPDGNI SVLPGPDGNINSPTRNADMQEELIASLEEQ R S F T R N 1 1 2 1 0 0 0 2 0 1 2 0 0 1 3 3 1 0 0 2 0 0 20 0 2040.064 Q7Z3K3;B4DSK8 Q7Z3K3 1322 1341 POGZ Pogo transposable element with ZNF domain yes no 2 2.8025E-24 136.99 2 0.60824 0.6188 8.2215 2 Median 0.60824 0.6188 8.2215 2 0 Median NaN NaN NaN 0 0 Median 25042000 14884000 10158000 25042000 14884000 10158000 0 0 0 11747 1874 12068 30920;30921 48193;48194 48193 2 SFMALSQDIQK QEVTNNLEFAKELQRSFMALSQDIQKTIKK ELQRSFMALSQDIQKTIKKTARREQLMREE R S F Q K T 1 0 0 1 0 2 0 0 0 1 1 1 1 1 0 2 0 0 0 0 0 0 11 0 1266.6278 E9PLA9;B4DSF8;G3V153;B3KXU8;Q14444 E9PLA9 115 125 CAPRIN1 Caprin-1 yes no 2 0.00031302 72.638 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11748 954 12069 30922 48195 48195 772 1 SFNFYVFPK CTFKYDYTDSKYITKSFNFYVFPKPFNRSS SKYITKSFNFYVFPKPFNRSSPDVKFVCQS K S F P K P 0 0 1 0 0 0 0 0 0 0 0 1 0 3 1 1 0 0 1 1 0 0 9 0 1147.5702 O95453 O95453 87 95 PARN Poly(A)-specific ribonuclease PARN yes yes 2 0.011714 61.999 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11749 1426 12070 30923 48196 48196 1 SFNLPMLMLGGGGYTIR NLTIKGHAKCVEFVKSFNLPMLMLGGGGYT NLPMLMLGGGGYTIRNVARCWTYETAVALD K S F I R N 0 1 1 0 0 0 0 4 0 1 3 0 2 1 1 1 1 0 1 0 0 0 17 0 1825.9219 Q6IT96;Q13547;B5BU61;B4DRG0;Q5HYD4 Q6IT96 290 306 HDAC1;DKFZp686H12203 Histone deacetylase;Histone deacetylase 1 yes no 2 0.00086152 51.211 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9934500 0 9934500 9934500 0 9934500 0 0 0 11750 1715 12071 30924 48197 48197 1548;1549 1 SFNNILAVLQK SGHALSPIIRPLLERSFNNILAVLQKVFPH LLERSFNNILAVLQKVFPHAEISQSDKKED R S F Q K V 1 0 2 0 0 1 0 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1245.7081 Q9ULI0 Q9ULI0 686 696 ATAD2B ATPase family AAA domain-containing protein 2B yes yes 2 0.0069453 53.493 1 1.76 1.9354 NaN 1 Median 1.76 1.9354 NaN 1 0 Median NaN NaN NaN 0 0 Median 3038100 1536400 1501800 3038100 1536400 1501800 0 0 0 11751 2108 12072 30925 48198 48198 1 SFPDFPTPGVVFR ______________________________ IRSFPDFPTPGVVFRDISPVLKDPASFRAA R S F F R D 0 1 0 1 0 0 0 1 0 0 0 0 0 3 3 1 1 0 0 2 0 0 13 0 1464.7402 H3BQB1;P07741;H3BQF1;H3BQZ9;H3BSW3;Q12898 H3BQB1 15 27 APRT Adenine phosphoribosyltransferase yes no 2 2.8045E-13 125.97 2 2 2.3253 3.4689 47.048 4 Linear 3.0394 3.4275 8.5556 2 0 Median 1.8183 1.5243 1.0341 2 0 Median 128380000 32873000 95506000 110990000 26636000 84355000 17387000 6236600 11151000 11752 1302 12073 30926;30927;30928;30929 48199;48200;48201;48202;48203;48204;48205;48206 48199 8 SFPGFQAFCETQGDR SGGLPQFGDEYDFYRSFPGFQAFCETQGDR SFPGFQAFCETQGDRLLQCMSRVMQYHGCR R S F D R L 1 1 0 1 1 2 1 2 0 0 0 0 0 3 1 1 1 0 0 0 0 0 15 0 1745.7468 Q01780;B4DKG8;B4DFE4;Q59G73;K7EJ37 Q01780 65 79 EXOSC10 Exosome component 10 yes no 2 0.00066869 52.555 2 2 0.87017 0.78376 1.8946 4 Median 0.79527 0.78877 3.049 2 0 Median 0.92852 0.78376 1.0331 2 0 Median 36701000 20463000 16239000 23068000 13385000 9683100 13633000 7077700 6555700 11753 1676 12074 30930;30931;30932;30933 48207;48208;48209;48210;48211;48212;48213 48211 7 SFQGPVLIGSSHGGVNIEDVAAETPEAIIK KYPRREYYFAITMERSFQGPVLIGSSHGGV NIEDVAAETPEAIIKEPIDIEEGIKKEQAL R S F I K E 3 0 1 1 0 1 3 4 1 4 1 1 0 1 2 3 1 0 0 3 0 0 30 0 3034.5611 B7ZAF6;E5KS55;B7Z9S6;B4DY87;Q7Z503 B7ZAF6 118 147 SUCLA2 Succinyl-CoA ligase subunit beta yes no 3 0.00034917 27.363 1 0.76767 0.60862 NaN 1 Median NaN NaN NaN 0 0 Median 0.76767 0.60862 NaN 1 0 Median 4287400 2018800 2268600 0 0 0 4287400 2018800 2268600 11754 1109 12075 30934 48214;48215 48214 2 SFQQSSLSR ______________________________ ______________________________ K S F S R D 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 4 0 0 0 0 0 0 9 0 1038.5094 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991;D6R8Z5;Q68E03;D6RB45;A0A1B0GX04;D6R9F3;D6RBS2;D6RCM3;D6REK4 D6REM6 4 12 MATR3;DKFZp686K23100;DKFZp686L22104 Matrin-3 yes no 2 8.1393E-05 101.64 2 0.80688 0.93862 NaN 1 Median 0.80688 0.93862 NaN 1 0 Median NaN NaN NaN 0 0 Median 95818000 67015000 28803000 95818000 67015000 28803000 0 0 0 11755 542 12076 30935;30936 48216;48217;48218 48216 3 SFQSDDSSLR KLQHTYLCEEKENNKSFQSDDSSLRASVQG KENNKSFQSDDSSLRASVQGVPLESSNNDI K S F L R A 0 1 0 2 0 1 0 0 0 0 1 0 0 1 0 4 0 0 0 0 0 0 10 0 1140.5047 Q6P0N0;G5E9K5 Q6P0N0 172 181 MIS18BP1 Mis18-binding protein 1 yes no 2 0.00010339 96.331 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9867200 9867200 0 9867200 9867200 0 0 0 0 11756 1849 12077 30937 48219 48219 1 SFSTASAITPSVSR MSRQSSVSFRSGGSRSFSTASAITPSVSRT RSFSTASAITPSVSRTSFTSVSRSGGGGGG R S F S R T 2 1 0 0 0 0 0 0 0 1 0 0 0 1 1 5 2 0 0 1 0 0 14 0 1409.7151 CON__P13647;P13647;B4E1T1;F8VV57 CON__P13647 16 29 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.0020149 67.153 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3885500 3885500 0 0 0 0 3885500 3885500 0 + 11757 1162 12078 30938 48220 48220 1 SFSTLFLETVK RIRDSEYEIQRQAKKSFSTLFLETVKRKSE QAKKSFSTLFLETVKRKSESSPIVRHAATA K S F V K R 0 0 0 0 0 0 1 0 0 0 2 1 0 2 0 2 2 0 0 1 0 0 11 0 1270.6809 Q03188;H0Y8J2 Q03188 261 271 CENPC Centromere protein C yes no 2 7.4243E-05 98.249 2 2 1.0214 0.92752 22.149 4 Median 0.74931 0.76807 3.5138 2 0 Median 1.3951 1.1232 3.9001 2 0 Median 46084000 24913000 21171000 32160000 19415000 12744000 13925000 5498100 8426500 11758 1681 12079 30939;30940;30941;30942 48221;48222;48223;48224;48225;48226;48227;48228 48222 8 SFSYQLEALK KKVLLQKIEFEPASKSFSYQLEALKSKYVL EPASKSFSYQLEALKSKYVLLNPKTEGASR K S F L K S 1 0 0 0 0 1 1 0 0 0 2 1 0 1 0 2 0 0 1 0 0 0 10 0 1184.6077 A0A024R8V6;Q9P275;A0A075B784;E9PEW0;Q9H9C5;K7ELR5;Q8IXW9;K7EQS0;K7EPT1;K7ERC1;K7ELT3 A0A024R8V6 48 57 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.003373 76.679 1 2 1.6423 1.3005 2.4957 3 Median 1.2403 1.3005 NaN 1 0 Median 1.6877 1.3209 3.2934 2 0 Median 21821000 9662800 12158000 15221000 7267400 7953700 6599800 2395400 4204400 11759 260 12080 30943;30944;30945 48229;48230;48231 48229 3 SFTASVDR KYTLLLGQDENSVIKSFTASVDRKFISLMS DENSVIKSFTASVDRKFISLMSLSSDGCIY K S F D R K 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 2 1 0 0 1 0 0 8 0 881.4243 Q9H8H0;J3QR28 Q9H8H0 206 213 NOL11 Nucleolar protein 11 yes no 2 0.0057496 87.251 2 0.72274 0.72426 NaN 1 Median 0.72274 0.72426 NaN 1 0 Median NaN NaN NaN 0 0 Median 36201000 25670000 10531000 36201000 25670000 10531000 0 0 0 11760 2042 12081 30946;30947 48232;48233 48232 2 SFTASVDRK KYTLLLGQDENSVIKSFTASVDRKFISLMS ENSVIKSFTASVDRKFISLMSLSSDGCIYE K S F R K F 1 1 0 1 0 0 0 0 0 0 0 1 0 1 0 2 1 0 0 1 0 0 9 1 1009.5193 Q9H8H0;J3QR28 Q9H8H0 206 214 NOL11 Nucleolar protein 11 yes no 2 3.7737E-05 116.05 2 1 1.0201 1.0284 0.37512 2 Median 0.87583 1.0257 NaN 1 0 Median 1.188 1.0312 NaN 1 0 Median 71533000 37396000 34137000 54084000 30021000 24062000 17449000 7374200 10075000 11761 2042 12082 30948;30949;30950 48234;48235;48236;48237 48236 4 SFTGNFVIDENILK DIIADAAYSIFQKPKSFTGNFVIDENILKE KSFTGNFVIDENILKEEGIENFDVYAIKPG K S F L K E 0 0 2 1 0 0 1 1 0 2 1 1 0 2 0 1 1 0 0 1 0 0 14 0 1595.8195 B2R923;A0A024R159;Q6YN16;B4DWC7;B4E136 B2R923 164 177 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 0.00014827 77.062 2 2 1.5355 1.3915 55.473 4 Median 2.1879 2.2884 15.704 2 0 Median 1.0999 0.89028 8.5145 2 0 Median 44854000 13936000 30918000 37356000 10285000 27071000 7498300 3650900 3847400 11762 70 12083 30951;30952;30953;30954 48238;48239;48240;48241 48239 4 SFTPDHVVYAR ERREKLKTSRDKLRKSFTPDHVVYARSKTA KLRKSFTPDHVVYARSKTAVYKVPPFTFHV K S F A R S 1 1 0 1 0 0 0 0 1 0 0 0 0 1 1 1 1 0 1 2 0 0 11 0 1290.6357 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 273 283 PTRF Polymerase I and transcript release factor yes no 2;3 0.00011853 96.331 4 1 0.88588 1.0071 36.678 4 Median 0.93027 1.034 24.481 3 0 Median 0.73349 0.62659 NaN 1 0 Median 187000000 103200000 83802000 181240000 99721000 81515000 5764500 3477600 2286900 11763 1017 12084 30955;30956;30957;30958;30959 48242;48243;48244;48245;48246;48247 48243 6 SFVDAEVDVTR IKTDLDDDITALKQRSFVDAEVDVTRDIVS LKQRSFVDAEVDVTRDIVSRERVWRTRTTI R S F T R D 1 1 0 2 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 3 0 0 11 0 1236.5986 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9;B4DV47;A0A0S2Z5N1 Q6P1J9 212 222 CDC73 Parafibromin yes no 2 0.0005685 74.162 3 1.4934 1.6031 8.2458 2 Median 1.4934 1.6031 8.2458 2 0 Median NaN NaN NaN 0 0 Median 75145000 28559000 46585000 75145000 28559000 46585000 0 0 0 11764 1851 12085 30960;30961;30962 48248;48249;48250;48251 48250 4 SFVEFILEPLYK TRKFTKKAPTSSSQRSFVEFILEPLYKILA SQRSFVEFILEPLYKILAQVVGDVDTSLPR R S F Y K I 0 0 0 0 0 0 2 0 0 1 2 1 0 2 1 1 0 0 1 1 0 0 12 0 1483.7963 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 319 330 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.00022137 88.681 1 1.0085 1.086 NaN 1 Median 1.0085 1.086 NaN 1 0 Median NaN NaN NaN 0 0 Median 40769000 20226000 20543000 40769000 20226000 20543000 0 0 0 11765 794 12086 30963 48252;48253 48253 2 SFVIDHQR MENALASIGGFCCGRSFVIDHQRLSGQGYC GGFCCGRSFVIDHQRLSGQGYCFSASLPPL R S F Q R L 0 1 0 1 0 1 0 0 1 1 0 0 0 1 0 1 0 0 0 1 0 0 8 0 1000.509 A0A024R277;O15269;Q6NUL7 A0A024R277 322 329 SPTLC1 Serine palmitoyltransferase 1 yes no 2 0.022432 57.177 2 0.81309 0.83618 26.937 2 Median 0.81309 0.83618 26.937 2 0 Median NaN NaN NaN 0 0 Median 20562000 11699000 8863200 20562000 11699000 8863200 0 0 0 11766 107 12087 30964;30965 48254;48255 48254 2 SFVLNLGK GECLRVRGEVAPDAKSFVLNLGKDSNNLCL EVAPDAKSFVLNLGKDSNNLCLHFNPRFNA K S F G K D 0 0 1 0 0 0 0 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 8 0 876.5069 P09382 P09382 30 37 LGALS1 Galectin-1 yes yes 2 0.0079089 81.297 2 6.1696 6.6414 NaN 1 Median 6.1696 6.6414 NaN 1 0 Median NaN NaN NaN 0 0 Median 64898000 4649700 60248000 64898000 4649700 60248000 0 0 0 11767 1460 12088 30966;30967 48256;48257;48258 48258 3 SFVSSNWAETPR KNLFERPLFNTHLQKSFVSSNWAETPRLGK LQKSFVSSNWAETPRLGKKNESSYFPGNVL K S F P R L 1 1 1 0 0 0 1 0 0 0 0 0 0 1 1 3 1 1 0 1 0 0 12 0 1379.647 B2RAN0;P54132;H0YNU5;B7ZKN7;B7Z2X2;Q3B7X0 B2RAN0 499 510 BLM Bloom syndrome protein yes no 2 0.037481 34.692 1 1.0086 0.87278 NaN 1 Median NaN NaN NaN 0 0 Median 1.0086 0.87278 NaN 1 0 Median 1762100 608730 1153300 0 0 0 1762100 608730 1153300 11768 873 12089 30968 48259 48259 1 SFYPEEVSSMVLTK AGRPKVQVEYKGETKSFYPEEVSSMVLTKM KSFYPEEVSSMVLTKMKEIAEAYLGKTVTN K S F T K M 0 0 0 0 0 0 2 0 0 0 1 1 1 1 1 3 1 0 1 2 0 0 14 0 1615.7804 E9PN89;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 V9HW22 113 126 HSPA8;HEL-S-72p Heat shock cognate 71 kDa protein no no 2 7.9463E-07 107.85 4 5 1.3149 2.2905 60.289 8 Plateau 2.0277 2.2429 5.1768 4 0 Median 0.90035 0.73009 3.468 4 0 Median 269940000 96029000 173910000 231200000 78759000 152440000 38736000 17271000 21465000 11769 1467;1248 12090;12091 30969;30970;30971;30972;30973;30974;30975;30976;30977 48260;48261;48262;48263;48264;48265;48266;48267;48268;48269;48270;48271;48272 48260 958 13 SFYTAIAQAFLSNEK VTFKDEPGEGSGVARSFYTAIAQAFLSNEK SFYTAIAQAFLSNEKLPNLECIQNANKGTH R S F E K L 3 0 1 0 0 1 1 0 0 1 1 1 0 2 0 2 1 0 1 0 0 0 15 0 1688.841 E7EMW7;O95071;E5RFK7;E7ET84 E7EMW7 2288 2302 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 2.2745E-10 119.39 1 1.1057 1.1278 NaN 1 Median 1.1057 1.1278 NaN 1 0 Median NaN NaN NaN 0 0 Median 5123800 2137200 2986600 5123800 2137200 2986600 0 0 0 11770 1218 12092 30978 48273 48273 1 SGAAHLCDSQETNCSTAGHSK HSASSDSTKAPQTPRSGAAHLCDSQETNCS CDSQETNCSTAGHSKTPPSGADSKTVKLKS R S G S K T 3 0 1 1 2 1 1 2 2 0 1 1 0 0 0 4 2 0 0 0 0 0 21 0 2216.9175 A0A024R8V6;Q9P275;A0A075B784;B3KMW2 A0A024R8V6 632 652 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 2.6439E-08 69.255 2 1.6923 1.3268 9.0937 2 Median NaN NaN NaN 0 0 Median 1.6923 1.3268 9.0937 2 0 Median 6611700 2238800 4372800 0 0 0 6611700 2238800 4372800 11771 260 12093 30979;30980 48274;48275;48276;48277 48277 4 SGAEVEAGDAAER AADVSVTHRPPLSPKSGAEVEAGDAAERRA PKSGAEVEAGDAAERRAPEEELPPLDPEEI K S G E R R 4 1 0 1 0 0 3 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 13 0 1260.5582 A0A087WZ13;E9PAU2;Q8IY67;K7EKR9 A0A087WZ13 17 29 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 2 0.0033495 65.5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2029500 0 2029500 2029500 0 2029500 0 0 0 11772 438 12094 30981 48278 48278 1 SGAHSFISGLPQGYDTEVDEAGSQLSGGQR TQKPTMEEITAAAVKSGAHSFISGLPQGYD TEVDEAGSQLSGGQRQAVALARALIRKPCV K S G Q R Q 2 1 0 2 0 3 2 6 1 1 2 0 0 1 1 5 1 0 1 1 0 0 30 0 3049.4013 X5CKB3;B2R9F3;A0A140T9T7;A0A0S2Z5A6;Q03518;B7Z7P4;A0A0S2Z4R8 X5CKB3 619 648 TAP1 Antigen peptide transporter 1 yes no 3 0.005329 22.437 1 1.2008 1.0195 NaN 1 Median NaN NaN NaN 0 0 Median 1.2008 1.0195 NaN 1 0 Median 5190000 1957000 3233000 0 0 0 5190000 1957000 3233000 11773 578 12095 30982 48279 48279 1 SGAIFTK EEYIPLDSDTVSTTRSGAIFTKAYQRMVLD SDTVSTTRSGAIFTKAYQRMVLDAVTLNNL R S G T K A 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 7 0 722.39629 P52701;A0A087WWJ1;Q1L838 P52701 722 728 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.037329 60.895 1 0.77964 0.81526 NaN 1 Median 0.77964 0.81526 NaN 1 0 Median NaN NaN NaN 0 0 Median 12099000 6946200 5153100 12099000 6946200 5153100 0 0 0 11774 1601 12096 30983 48280 48280 1 SGALDVLQMKEEDVLK ______________________________ GALDVLQMKEEDVLKFLAAGTHLGGTNLDF M S G L K F 1 0 0 2 0 1 2 1 0 0 3 2 1 0 0 1 0 0 0 2 0 0 16 1 1773.9183 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;Q96RS2;F8WD59 C9J9K3 2 17 RPSA 40S ribosomal protein SA yes no 2 1.7046E-13 123.95 2 2.0562 2.4004 4.2164 2 Median 2.0562 2.4004 4.2164 2 0 Median NaN NaN NaN 0 0 Median 37466000 13099000 24368000 37466000 13099000 24368000 0 0 0 11775 119 12097 30984;30985 48281;48282;48283 48282 103 3 SGAPPPSGSAVSTAPQPK QYIRRLAAEATEWQRSGAPPPSGSAVSTAP PPPSGSAVSTAPQPKPADKMSKNKKKKLKK R S G P K P 3 0 0 0 0 1 0 2 0 0 0 1 0 0 5 4 1 0 0 1 0 0 18 0 1634.8264 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9 Q96SB4 241 258 SRPK1 SRSF protein kinase 1 yes no 2 6.0976E-06 82.925 3 1.8364 1.9853 NaN 1 Median 1.8364 1.9853 NaN 1 0 Median NaN NaN NaN 0 0 Median 36480000 9362000 27118000 36480000 9362000 27118000 0 0 0 11776 1988 12098 30986;30987;30988 48284;48285;48286;48287 48287 4 SGAQASSTPLSPTR ______________________________ RSGAQASSTPLSPTRITRLQEKEDLQELND R S G T R I 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 4 2 0 0 0 0 0 14 0 1358.679 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;W5X314 P02545 12 25 LMNA Prelamin-A/C;Lamin-A/C yes no 2 2.1703E-83 216.97 2 2 1.3662 1.5079 9.0878 4 Linear 1.274 1.492 0.84915 2 0 Median 1.5108 1.2972 7.1543 2 0 Median 684790000 281850000 402940000 622600000 256700000 365910000 62183000 25150000 37034000 11777 1440 12099 30989;30990;30991;30992 48288;48289;48290;48291;48292;48293;48294;48295 48289 8 SGASAAPAASAAAALAPSATR RSRSSAAAKLRGQKRSGASAAPAASAAAAL PAASAAAALAPSATRTRRSASQAGSKSQAV R S G T R T 11 1 0 0 0 0 0 1 0 0 1 0 0 0 2 4 1 0 0 0 0 0 21 0 1768.9068 A0A0M3HER2 A0A0M3HER2 18 38 yes yes 2 4.6751E-16 110.84 2 2 1.3961 1.3055 6.9363 4 Median 1.1793 1.2451 0.0026877 2 0 Median 1.6616 1.3986 3.0374 2 0 Median 83380000 38324000 45056000 66692000 32200000 34491000 16689000 6123400 10565000 11778 541 12100 30993;30994;30995;30996 48296;48297;48298;48299;48300;48301;48302;48303;48304;48305;48306 48301 11 SGASEANLIVAK RSQHDILQMICSKRRSGASEANLIVAKSWA KRRSGASEANLIVAKSWADVVKLGAKQTQT R S G A K S 3 0 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1158.6245 P46013;Q70L73 P46013 648 659 MKI67 Antigen KI-67 no no 2 6.1558E-31 175.65 2 2 2.3071 2.3065 15.976 4 Median 1.7127 2.0204 0.91106 2 0 Median 3.1297 2.6613 2.4129 2 0 Median 953770000 317480000 636290000 820960000 285340000 535620000 132810000 32141000 100670000 11779 1569;1864 12101 30997;30998;30999;31000 48307;48308;48309;48310;48311;48312;48313;48314;48315;48316 48310 10 SGASGASAAPAASAAAALAPSATR RSRSSAAAKLRGQKRSGASGASAAPAASAA PAASAAAALAPSATRTRRSASQAGSKSQAV R S G T R T 12 1 0 0 0 0 0 2 0 0 1 0 0 0 2 5 1 0 0 0 0 0 24 0 1983.9974 Q7Z7K6 Q7Z7K6 18 41 CENPV Centromere protein V yes yes 2 3.6453E-27 118.47 2 2 1.2804 1.451 2.9205 2 Median 1.2804 1.451 2.9205 2 0 Median NaN NaN NaN 0 0 Median 142190000 55347000 86846000 120040000 55347000 64690000 22156000 0 22156000 11780 1882 12102 31001;31002;31003;31004 48317;48318;48319;48320;48321;48322;48323 48318 7 SGASVVAIR MDAILTEAIKACFQKSGASVVAIRKYIIHK KACFQKSGASVVAIRKYIIHKYPSLELERR K S G I R K 2 1 0 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 858.49232 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 176 184 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 1.59E-05 121.74 2 2 0.80719 0.80944 10.03 4 Median 0.74824 0.87838 4.5841 2 0 Median 0.86616 0.74714 4.3501 2 0 Median 813560000 461100000 352470000 749200000 426280000 322920000 64368000 34824000 29544000 11781 1817 12103 31005;31006;31007;31008 48324;48325;48326;48327;48328;48329;48330;48331 48326 8 SGAVEETFR PEFKEEKLQLQPKPRSGAVEETFRIVKDSL LQPKPRSGAVEETFRIVKDSLSDDVVKATQ R S G F R I 1 1 0 0 0 0 2 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 9 0 994.47197 B2R923;A0A024R159;Q6YN16;B4DWC7;B4E136 B2R923 234 242 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 0.001292 87.308 1 2.4847 2.6045 NaN 1 Median 2.4847 2.6045 NaN 1 0 Median NaN NaN NaN 0 0 Median 12344000 3255900 9087700 12344000 3255900 9087700 0 0 0 11782 70 12104 31009 48332;48333 48332 2 SGAYLIPLLER SGRDILARAKNGTGKSGAYLIPLLERLDLK GTGKSGAYLIPLLERLDLKKDNIQAMVIVP K S G E R L 1 1 0 0 0 0 1 1 0 1 3 0 0 0 1 1 0 0 1 0 0 0 11 0 1230.6972 B2R858;P26196;Q8IV96 B2R858 136 146 DDX6 Probable ATP-dependent RNA helicase DDX6 yes no 2 0.0099794 59.153 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4054800 0 4054800 4054800 0 4054800 0 0 0 11783 860 12105 31010 48334 48334 1 SGDAAIVDMVPGK RRSGKKLEDGPKFLKSGDAAIVDMVPGKPM LKSGDAAIVDMVPGKPMCVESFSDYPPLGR K S G G K P 2 0 0 2 0 0 0 2 0 1 0 1 1 0 1 1 0 0 0 2 0 0 13 0 1258.6227 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q9NZS6;Q6P4C9;B4E2C5;A0A087WV01;Q9H2I7;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q2F837;Q96EB3;Q53HR1 Q6IPT9 396 408 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 no no 2 7.5419E-20 149.23 4 4 2.2974 2.6495 56.823 6 Median 2.3506 2.6667 0.9081 4 0 Median 1.3415 1.0786 72.214 2 0 Median 649540000 199960000 449590000 634330000 193730000 440600000 15208000 6228000 8980500 11784 1658;1790 12106;12107 31011;31012;31013;31014;31015;31016;31017;31018 48335;48336;48337;48338;48339;48340;48341;48342;48343;48344;48345 48340 1440 11 SGDAAIVDMVPGKPMCVESFSDYPPLGR RRSGKKLEDGPKFLKSGDAAIVDMVPGKPM PMCVESFSDYPPLGRFAVRDMRQTVAVGVI K S G G R F 2 1 0 3 1 0 1 3 0 1 1 1 2 1 4 3 0 0 1 3 0 0 28 1 2994.3925 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q9NZS6;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q2F837;Q96EB3;Q53HR1 Q6IPT9 396 423 EEF1A1;EEF1A1P5;EEF1A1L14 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 no no 3 8.5025E-07 44.264 1 3.5365 3.0025 NaN 1 Median NaN NaN NaN 0 0 Median 3.5365 3.0025 NaN 1 0 Median 3309500 697770 2611700 0 0 0 3309500 697770 2611700 11785 1658;1790 12108 31019 48346;48347 48347 2 SGDETPGSEVPGDK EQGLGKREEDEPEERSGDETPGSEVPGDKA RSGDETPGSEVPGDKAAEEQGDDQDSEKSK R S G D K A 0 0 0 2 0 0 2 3 0 0 0 1 0 0 2 2 1 0 0 1 0 0 14 0 1373.5947 H3BQZ7;Q1KMD3 H3BQZ7 161 174 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.0012105 55.314 2 1.1764 1.1873 3.178 2 Median 1.1764 1.1873 3.178 2 0 Median NaN NaN NaN 0 0 Median 19007000 8476500 10531000 19007000 8476500 10531000 0 0 0 11786 1303 12109 31020;31021 48348;48349;48350;48351 48350 4 SGDHLHNDSQIEADFR ______________________________ GDHLHNDSQIEADFRLNDSHKHKDKHKDRE M S G F R L 1 1 1 3 0 1 1 1 2 1 1 0 0 1 0 2 0 0 0 0 0 0 16 0 1839.8136 P11387;B9EG90;Q6PK95;Q6NWZ5 P11387 2 17 TOP1 DNA topoisomerase 1 yes no 2;3 7.7926E-58 159.69 5 2 1.1844 1.3517 5.6579 6 Median 1.1462 1.3379 2.0133 4 0 Median 1.697 1.4801 2.08 2 0 Median 2252300000 1002000000 1250300000 1632900000 769720000 863180000 619420000 232330000 387090000 11787 1470 12110 31022;31023;31024;31025;31026;31027;31028 48352;48353;48354;48355;48356;48357;48358;48359;48360;48361;48362;48363;48364 48353 13 SGDSEVYQLGDVSQK NPVTIFSLATNEMWRSGDSEVYQLGDVSQK SGDSEVYQLGDVSQKTTWHRISVFRPGLRD R S G Q K T 0 0 0 2 0 2 1 2 0 0 1 1 0 0 0 3 0 0 1 2 0 0 15 0 1610.7424 Q567R6;A4D1U3;Q04837;A0A0G2JLD8;E7EUY5;B7Z268;C9K0U8 Q567R6 67 81 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 3.3416E-22 146.36 2 2 0.81356 0.71771 26.39 4 Linear 0.80878 0.90836 2.5564 2 0 Median 0.71995 0.57553 0.4637 2 0 Median 242100000 133930000 108160000 203460000 111610000 91858000 38633000 22328000 16305000 11788 666 12111 31029;31030;31031;31032 48365;48366;48367;48368;48369;48370;48371;48372;48373 48365 9 SGEEDEEILFK IHFEPIVSLPEVEVKSGEEDEEILFKERAK VEVKSGEEDEEILFKERAKLYRWDRDVSQW K S G F K E 0 0 0 1 0 0 4 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1294.5929 P49792;Q5JC46;Q5JC45 P49792 2925 2935 RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 0.00033089 86.898 1 1.581 1.6147 NaN 1 Median 1.581 1.6147 NaN 1 0 Median NaN NaN NaN 0 0 Median 11988000 4929300 7058600 11988000 4929300 7058600 0 0 0 11789 1588 12112 31033 48374 48374 1 SGEGEVSGLMR YSSAEPHVSGVKRSRSGEGEVSGLMRKVPR KRSRSGEGEVSGLMRKVPRVSLERLDLDLT R S G M R K 0 1 0 0 0 0 2 3 0 0 1 0 1 0 0 2 0 0 0 1 0 0 11 0 1120.5183 B2R8R5;Q13263;M0R0K9 B2R8R5 473 483 TRIM28 Transcription intermediary factor 1-beta yes no 2 2.553E-08 117.01 2 2.2313 2.5082 4.6003 2 Median 2.2313 2.5082 4.6003 2 0 Median NaN NaN NaN 0 0 Median 116590000 36914000 79679000 116590000 36914000 79679000 0 0 0 11790 862 12113 31034;31035 48375;48376;48377 48377 674 3 SGEGIREPISVK QLLRKMGWTGGGLGKSGEGIREPISVKEQH LGKSGEGIREPISVKEQHKREGLGLDVERV K S G V K E 0 1 0 0 0 0 2 2 0 2 0 1 0 0 1 2 0 0 0 1 0 0 12 1 1270.6881 Q6NUN2;A3F769;O15226;A3F768;A2I829 Q6NUN2 572 583 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.0022295 71.349 1 0.64151 0.74224 NaN 1 Median 0.64151 0.74224 NaN 1 0 Median NaN NaN NaN 0 0 Median 32909000 19323000 13586000 32909000 19323000 13586000 0 0 0 11791 655 12114 31036 48378 48378 1 SGELAQEYDK KNPKERTALFEEISRSGELAQEYDKRKKEM EEISRSGELAQEYDKRKKEMVKAEEDTQFN R S G D K R 1 0 0 1 0 1 2 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1138.5142 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;Q68EN4;H0Y7K8;Q5H934;Q7Z4C6 Q14683 161 170 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 6.3498E-12 143.03 2 1 1.1861 1.0744 8.5024 2 Median 0.95886 1.0117 NaN 1 0 Median 1.4671 1.141 NaN 1 0 Median 18896000 9254100 9641500 15506000 7733100 7772700 3389700 1521000 1868800 11792 1739 12115 31037;31038;31039 48379;48380;48381;48382;48383 48380 5 SGFGEISSPVIR ______________________________ MDRSGFGEISSPVIREAEVTRTARKQSAQK R S G I R E 0 1 0 0 0 0 1 2 0 2 0 0 0 1 1 3 0 0 0 1 0 0 12 0 1247.651 P57740;G3V1T4 P57740 4 15 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.0022413 68.893 2 1 1.5109 1.31 NaN 1 Median NaN NaN NaN 0 0 Median 1.5109 1.31 NaN 1 0 Median 17296000 637460 16659000 15229000 0 15229000 2067600 637460 1430100 11793 1621 12116 31040;31041;31042 48384;48385;48386 48384 3 SGFLAAR NLNNELTVEEQVEIRSGFLAARAQLPVMVI VEEQVEIRSGFLAARAQLPVMVIVTPQDRK R S G A R A 2 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 7 0 720.39187 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 935 941 NOL6 Nucleolar protein 6 yes no 2 0.031701 72.355 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15292000 15292000 0 15292000 15292000 0 0 0 0 11794 2038 12117 31043 48387 48387 1 SGFLVWR DGIYKVVKYWPEKGKSGFLVWRYLLRRDDD KYWPEKGKSGFLVWRYLLRRDDDEPGPWTK K S G W R Y 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 7 0 863.46537 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 584 590 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.013509 84.359 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3436000 3436000 0 3436000 3436000 0 0 0 0 11795 406 12118 31044;31045 48388;48389 48389 2 SGFNLEELEK TPPPYFNESIVVDMKSGFNLEELEKNNAQS VVDMKSGFNLEELEKNNAQSIRAIKGPHLA K S G E K N 0 0 1 0 0 0 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1164.5663 A0A024R2Z6;Q9BVP2 A0A024R2Z6 413 422 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 1.0106E-12 135.43 3 2 0.98709 0.92082 2.5858 4 Median 0.83281 0.93549 3.8599 2 0 Median 1.151 0.92079 1.6283 2 0 Median 318400000 185530000 132860000 282450000 169150000 113300000 35946000 16386000 19560000 11796 125 12119 31046;31047;31048;31049;31050 48390;48391;48392;48393;48394;48395;48396;48397;48398;48399;48400 48393 11 SGGEQAQDWDALPPK ______________________________ SGGEQAQDWDALPPKRPRLGAGNKIGGRRL R S G P K R 2 0 0 2 0 2 1 2 0 0 1 1 0 0 2 1 0 1 0 0 0 0 15 0 1597.7372 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65 A8K6D2 14 28 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 3.1728E-11 126.34 4 2 1.186 1.0841 11.337 4 Median 0.9399 0.98087 0.71382 2 0 Median 1.4809 1.1935 0.15972 2 0 Median 55952000 27989000 27963000 44328000 23386000 20943000 11623000 4603600 7019900 11797 759 12120 31051;31052;31053;31054;31055;31056 48401;48402;48403;48404;48405;48406;48407;48408;48409;48410;48411 48407 11 SGGFQSMGLSYPVFK DTREMVRAQNKKKKKSGGFQSMGLSYPVFK SGGFQSMGLSYPVFKGIMKKGYKVPTPIQR K S G F K G 0 0 0 0 0 1 0 3 0 0 1 1 1 2 1 3 0 0 1 1 0 0 15 0 1603.7705 Q8TDD1;F8VRX4 Q8TDD1 95 109 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 7.8731E-05 78.692 2 1 1.1789 1.213 3.2941 2 Median 1.1789 1.213 3.2941 2 0 Median NaN NaN NaN 0 0 Median 63112000 33593000 29519000 59524000 30006000 29519000 3587400 3587400 0 11798 1933 12121 31057;31058;31059 48412;48413;48414;48415 48413 1772 3 SGGGFGPDPGSGTTVPAR RERLRWPPPPKPRLKSGGGFGPDPGSGTTV GFGPDPGSGTTVPARRLPVPRPSFDASASE K S G A R R 1 1 0 1 0 0 0 6 0 0 0 0 0 1 3 2 2 0 0 1 0 0 18 0 1615.759 Q9H4L4 Q9H4L4 44 61 SENP3 Sentrin-specific protease 3 yes yes 2 0.00041013 58.32 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7342100 0 7342100 7342100 0 7342100 0 0 0 11799 2031 12122 31060;31061 48416;48417 48417 2 SGGGFSSGSAGIINYQR ______________________________ GGFSSGSAGIINYQRRTTSSSTRRSGGGGG R S G Q R R 1 1 1 0 0 1 0 5 0 2 0 0 0 1 0 4 0 0 1 0 0 0 17 0 1656.7856 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 13 29 KRT1 Keratin, type II cytoskeletal 1 no no 2 2.1804E-19 160.15 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 177600000 177600000 0 154210000 154210000 0 23398000 23398000 0 + 11800 1308;1309 12123 31062;31063;31064 48418;48419;48420;48421;48422 48419 5 SGGGGGGGGCGGGGGVSSLR MSVRYSSSKHYSSSRSGGGGGGGGCGGGGG GGGGCGGGGGVSSLRISSSKGSLGGGFSSG R S G L R I 0 1 0 0 1 0 0 13 0 0 1 0 0 0 0 3 0 0 0 1 0 0 20 0 1548.6699 CON__P13645;P13645 CON__P13645 16 35 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.8104E-81 183 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62560000 62560000 0 33334000 33334000 0 29226000 29226000 0 + 11801 1161 12124 31065;31066;31067;31068 48423;48424;48425;48426 48424 4 SGGGGGGGLGSGGSIR ______________________________ GGGGGGGLGSGGSIRSSYSRFSSSGGRGGG R S G I R S 0 1 0 0 0 0 0 10 0 1 1 0 0 0 0 3 0 0 0 0 0 0 16 0 1231.5905 CON__P35527;P35527 CON__P35527 14 29 KRT9 Keratin, type I cytoskeletal 9 yes no 2 6.1382E-57 183.79 1 0.017833 0.020824 NaN 1 Median 0.017833 0.020824 NaN 1 0 Median NaN NaN NaN 0 0 Median 545460000 535630000 9834100 545460000 535630000 9834100 0 0 0 + 11802 1165 12125 31069 48427 48427 1 SGGGVLEERPLTLYR CDIRKSILYLQFWIRSGGGVLEERPLTLYR SGGGVLEERPLTLYRGNSRNVQLVCSEHGL R S G Y R G 0 2 0 0 0 0 2 3 0 0 3 0 0 0 1 1 1 0 1 1 0 0 15 1 1645.8788 Q96QE3 Q96QE3 1406 1420 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 3 0.00051756 37.583 2 3.9722 3.5516 6.6014 2 Median NaN NaN NaN 0 0 Median 3.9722 3.5516 6.6014 2 0 Median 6956300 1522200 5434100 0 0 0 6956300 1522200 5434100 11803 1984 12126 31070;31071 48428;48429 48429 2 SGGIETIANEYSDR GIDLGFLNCYIAVARSGGIETIANEYSDRC RSGGIETIANEYSDRCTPACISLGSRTRAI R S G D R C 1 1 1 1 0 0 2 2 0 2 0 0 0 0 0 2 1 0 1 0 0 0 14 0 1510.69 B3KNM0;Q53ZP9;A0A140VKE7;B4DZR0;O95757;D6RJ96 B3KNM0 20 33 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.00030436 81.017 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7190700 0 7190700 7190700 0 7190700 0 0 0 11804 624 12127 31072 48430 48430 1 SGGIPALVR HNLSHHREGLLAIFKSGGIPALVRMLSSPV LLAIFKSGGIPALVRMLSSPVESVLFYAIT K S G V R M 1 1 0 0 0 0 0 2 0 1 1 0 0 0 1 1 0 0 0 1 0 0 9 0 868.51305 B4DE59;C9JTX4;C9J826;C9JK18;C9JKY1;A0A0S2Z487;A0A024R1X8;P14923 B4DE59 225 233 JUP Junction plakoglobin no no 2 0.037915 42.869 1 0.5191 0.51559 NaN 1 Median 0.5191 0.51559 NaN 1 0 Median NaN NaN NaN 0 0 Median 8744200 4724900 4019300 8744200 4724900 4019300 0 0 0 11805 964;94 12128 31073 48431 48431 1 SGGLGGSHALLLLR IPKKLLQKVFNDTCRSGGLGGSHALLLLRS RSGGLGGSHALLLLRSCGSLLPELKLEERT R S G L R S 1 1 0 0 0 0 0 4 1 0 5 0 0 0 0 2 0 0 0 0 0 0 14 0 1349.7779 E5KNY5;P42704;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 115 128 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 5.8466E-05 85.457 3 2 1.4775 1.3918 42.237 4 Median 2.0208 2.0516 12.918 2 0 Median 1.1566 1.0001 4.7708 2 0 Median 53327000 13549000 39779000 47916000 10859000 37057000 5411100 2689300 2721800 11806 1207 12129 31074;31075;31076;31077;31078 48432;48433;48434;48435;48436;48437 48433 6 SGGLQTPECLSR SAPASPTHPGLMSPRSGGLQTPECLSREGS SPRSGGLQTPECLSREGSPIPHDPEFGSKL R S G S R E 0 1 0 0 1 1 1 2 0 0 2 0 0 0 1 2 1 0 0 0 0 0 12 0 1303.619 B4DY33;A4D1Z4;P85037 B4DY33 314 325 KIAA0415;FOXK1 Forkhead box protein K1 yes no 2 0.015866 53.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11807 667 12130 31079 48438 48438 1 SGGMSNELNNIISR ASKLYRPGSVAYVSRSGGMSNELNNIISRT RSGGMSNELNNIISRTTDGVYEGVAIGGDR R S G S R T 0 1 3 0 0 0 1 2 0 2 1 0 1 0 0 3 0 0 0 0 0 0 14 0 1490.7147 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 653 666 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 1.2092E-06 97.214 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10304000 0 10304000 10304000 0 10304000 0 0 0 11808 89 12131 31080;31081 48439;48440 48440 84 2 SGGNEVSIEER KPAPPQTEQVESKRKSGGNEVSIEERLGAM SKRKSGGNEVSIEERLGAMDIDTHKKGKED K S G E R L 0 1 1 0 0 0 3 2 0 1 0 0 0 0 0 2 0 0 0 1 0 0 11 0 1175.5418 Q15061 Q15061 431 441 WDR43 WD repeat-containing protein 43 yes yes 2 2.8596E-31 185.08 2 2 1.0977 1.0978 3.9391 4 Median 0.97388 1.0978 1.2023 2 0 Median 1.2725 1.0875 6.6496 2 0 Median 237570000 112050000 125520000 186300000 89650000 96652000 51263000 22398000 28865000 11809 1752 12132 31082;31083;31084;31085 48441;48442;48443;48444;48445;48446 48441 6 SGGPVVVLVQLER NIELSYEVVDKDSIRSGGPVVVLVQLEREE IRSGGPVVVLVQLEREEEVTGPVIAPLFPQ R S G E R E 0 1 0 0 0 1 1 2 0 0 2 0 0 0 1 1 0 0 0 4 0 0 13 0 1351.7823 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5;Q7L5W4;Q9P172 O75643 2031 2043 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0081175 44.299 1 0.79099 0.67209 NaN 1 Median NaN NaN NaN 0 0 Median 0.79099 0.67209 NaN 1 0 Median 2875000 1774300 1100800 0 0 0 2875000 1774300 1100800 11810 1411 12133 31086 48447 48447 1 SGGPVVVLVQLEREEEVTGPVIAPLFPQK NIELSYEVVDKDSIRSGGPVVVLVQLEREE EEVTGPVIAPLFPQKREEGWWVVIGDAKSN R S G Q K R 1 1 0 0 0 2 4 3 0 1 3 1 0 1 4 1 1 0 0 6 0 0 29 1 3086.7016 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 2031 2059 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.00097388 39.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23902000 23902000 0 23902000 23902000 0 0 0 0 11811 1411 12134 31087 48448 48448 1 SGGSGHAVAEPASPEQELDQNK QGETQLLVSRKSRPKSGGSGHAVAEPASPE VAEPASPEQELDQNKGKGRDVESVQTPSKA K S G N K G 3 0 1 1 0 2 3 3 1 0 1 1 0 0 2 3 0 0 0 1 0 0 22 0 2207.0091 P46013 P46013 296 317 MKI67 Antigen KI-67 yes yes 3 1.3041E-08 70.121 1 2 3.6848 3.0167 15.577 3 Median 2.4698 2.4268 NaN 1 0 Median 3.8834 3.1466 5.9587 2 0 Median 32599000 7635300 24964000 20187000 4696600 15491000 12412000 2938700 9473300 11812 1569 12135 31088;31089;31090 48449;48450;48451;48452;48453 48449 5 SGGTALHVAAAK QWLNSGHINDVRHAKSGGTALHVAAAKGYT HAKSGGTALHVAAAKGYTEVLKLLIQAGYD K S G A K G 4 0 0 0 0 0 0 2 1 0 1 1 0 0 0 1 1 0 0 1 0 0 12 0 1081.588 F8VZN8;A0A024RBF1;B2RAH5;O14974;F8VW28;H0YHL8 F8VZN8 198 209 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 2 0.0022453 68.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8807000 0 8807000 8807000 0 8807000 0 0 0 11813 336 12136 31091 48454 48454 1 SGGTEGLLAEK GDQSAINELMQMRLRSGGTEGLLAEKLEAL MRLRSGGTEGLLAEKLEALITQTRAKQAAT R S G E K L 1 0 0 0 0 0 2 3 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1060.5401 Q9UHB9;B4DVI7;Q96K98;B3KMI9 Q9UHB9 267 277 SRP68 Signal recognition particle subunit SRP68 yes no 2 0.017682 51.531 1 1.3975 1.0961 NaN 1 Median NaN NaN NaN 0 0 Median 1.3975 1.0961 NaN 1 0 Median 2064000 929970 1134000 0 0 0 2064000 929970 1134000 11814 2101 12137 31092 48455 48455 1 SGGVGGSNTNWK AEGQALDGVSISDLKSGGVGGSNTNWKTLY DLKSGGVGGSNTNWKTLYEVKSENLGQGDK K S G W K T 0 0 2 0 0 0 0 4 0 0 0 1 0 0 0 2 1 1 0 1 0 0 12 0 1162.5367 P27694;I3L4R8 P27694 432 443 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 1.7773E-05 104.43 1 0.59156 0.5794 NaN 1 Median 0.59156 0.5794 NaN 1 0 Median NaN NaN NaN 0 0 Median 21987000 13940000 8046600 21987000 13940000 8046600 0 0 0 11815 1525 12138 31093 48456;48457 48456 2 SGGVNQYVVQEVLSIK MYEFHLPLSPEELLKSGGVNQYVVQEVLSI GGVNQYVVQEVLSIKHLPPQLRAFQAAFRA K S G I K H 0 0 1 0 0 2 1 2 0 1 1 1 0 0 0 2 0 0 1 4 0 0 16 0 1718.9203 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00;A0PJ76;F5GZK7;F5H431 B3KMS0 20 35 NCAPD2 Condensin complex subunit 1 yes no 2 4.5485E-81 206.18 2 2 1.2211 1.2176 15.536 4 Median 0.91888 1.0659 0.54712 2 0 Median 1.6086 1.3947 0.92832 2 0 Median 891620000 419730000 471890000 545310000 285350000 259960000 346320000 134380000 211930000 11816 908 12139 31094;31095;31096;31097 48458;48459;48460;48461;48462;48463;48464;48465;48466;48467 48459 10 SGHFEQAIK LLSKHRAFEDEMSGRSGHFEQAIKEGEDMI DEMSGRSGHFEQAIKEGEDMIAEEHFGSEK R S G I K E 1 0 0 0 0 1 1 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 9 0 1015.5087 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 605 613 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00087689 93.111 1 1 2.7221 2.4833 69.552 2 Median 1.4811 1.5186 NaN 1 0 Median 5.0028 4.0609 NaN 1 0 Median 34800000 13513000 21288000 31947000 13068000 18880000 2853100 445040 2408000 11817 415 12140 31098;31099 48468;48469 48468 2 SGICSLHPLLR DTESAEMKIAIYLSKSGICSLHPLLRGWEE YLSKSGICSLHPLLRGWEEALENVIKSTKP K S G L R G 0 1 0 0 1 0 0 1 1 1 3 0 0 0 1 2 0 0 0 0 0 0 11 0 1251.6758 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 628 638 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.0084766 40.154 2 2 1.0463 0.98507 1.8637 4 Median 0.91832 0.97063 1.6188 2 0 Median 1.1782 0.99594 1.0813 2 0 Median 64586000 30765000 33821000 51622000 25102000 26521000 12963000 5662600 7300800 11818 897 12141 31100;31101;31102;31103 48470;48471;48472;48473;48474 48470 5 SGIGDRPLQDLSNTSFVSNNTAESENK KMNKMKFKVNRRTQKSGIGDRPLQDLSNTS NTSFVSNNTAESENKSEDLSSERTSRRRRC K S G N K S 1 1 4 2 0 1 2 2 0 1 2 1 0 1 1 5 2 0 0 1 0 0 27 1 2879.3533 Q562F6 Q562F6 1208 1234 SGOL2 Shugoshin-like 2 yes yes 3 1.2498E-15 63.893 2 2 1.4159 1.4067 23.202 4 Median 0.98056 1.1375 7.4454 2 0 Median 1.9694 1.6864 3.042 2 0 Median 101680000 43418000 58262000 73646000 34322000 39323000 28034000 9095500 18938000 11819 1795 12142 31104;31105;31106;31107 48475;48476;48477;48478;48479;48480;48481;48482;48483;48484 48479 10 SGIIPQTR APEKELIHLLPIKDKSGIIPQTREKPVTDS LLPIKDKSGIIPQTREKPVTDSNKDEEDQE K S G T R E 0 1 0 0 0 1 0 1 0 2 0 0 0 0 1 1 1 0 0 0 0 0 8 0 870.49232 A8K905;Q8WTT2 A8K905 159 166 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.04275 46.39 1 0.95893 0.98097 NaN 1 Median 0.95893 0.98097 NaN 1 0 Median NaN NaN NaN 0 0 Median 34028000 16765000 17263000 34028000 16765000 17263000 0 0 0 11820 780 12143 31108 48485 48485 1 SGLELLK ADDEEEGVSPDTAIRSGLELLKVLSFTHPT VSPDTAIRSGLELLKVLSFTHPTSFHSAET R S G L K V 0 0 0 0 0 0 1 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 758.4538 G1UI16;Q29RF7 G1UI16 658 664 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.025144 89.369 2 0.67466 0.6851 NaN 1 Median 0.67466 0.6851 NaN 1 0 Median NaN NaN NaN 0 0 Median 11743000 9050900 2691700 11743000 9050900 2691700 0 0 0 11821 1270 12144 31109;31110 48486;48487 48486 2 SGLLVLTTPLASLAPR ______________________________ GLLVLTTPLASLAPRLASILTSAARLVNHT R S G P R L 2 1 0 0 0 0 0 1 0 0 5 0 0 0 2 2 2 0 0 1 0 0 16 0 1607.961 Q13057;K7ES73;K7EN91;K7EP09;K7EPT0;K7ESK6;B4E1C0 Q13057 6 21 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 2 1.0965E-06 96.64 3 1.3951 1.4054 3.1076 2 Median 1.3951 1.4054 3.1076 2 0 Median NaN NaN NaN 0 0 Median 24266000 10478000 13788000 24266000 10478000 13788000 0 0 0 11822 1704 12145 31111;31112;31113 48488;48489;48490;48491 48490 4 SGLNQIPNRR FEESMKWKKLTNAQRSGLNQIPNRRFTLWW TNAQRSGLNQIPNRRFTLWWSPTINRANVY R S G R R F 0 2 2 0 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 10 1 1153.6316 Q6P2Q9;B4DK16;Q6JH02;Q6JH03;I3L3Z8 Q6P2Q9 1524 1533 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 0.00012741 85.731 4 0.82909 0.91264 26.124 4 Median 0.82909 0.91264 26.124 4 0 Median NaN NaN NaN 0 0 Median 153410000 80804000 72606000 153410000 80804000 72606000 0 0 0 11823 1854 12146 31114;31115;31116;31117 48492;48493;48494;48495;48496;48497 48493 6 SGLQTDYATEK DVKSQKENVLQYCRKSGLQTDYATEKESAD YCRKSGLQTDYATEKESADGLQGETQLLVS K S G E K E 1 0 0 1 0 1 1 1 0 0 1 1 0 0 0 1 2 0 1 0 0 0 11 0 1211.567 P46013 P46013 264 274 MKI67 Antigen KI-67 yes yes 2 0.00035658 84.882 2 2 2.6837 2.51 22.309 4 Median 1.8669 2.0724 2.5514 2 0 Median 3.8368 3.0443 2.7455 2 0 Median 158160000 49850000 108310000 129650000 44278000 85373000 28507000 5571700 22935000 11824 1569 12147 31118;31119;31120;31121 48498;48499;48500;48501;48502;48503;48504;48505 48499 8 SGLSSPIYIDLR LYDVQAFKFGDFVLKSGLSSPIYIDLRGIV VLKSGLSSPIYIDLRGIVSRPRLLSQVADI K S G L R G 0 1 0 1 0 0 0 1 0 2 2 0 0 0 1 3 0 0 1 0 0 0 12 0 1319.7085 A8K5J1;P11172;B5LY71;B5LY69;E9PFD2;B5LY67;F2Z3P2;F2Z303;F8WDG4 A8K5J1 30 41 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 0.00035606 72.2 2 2.0183 2.153 3.501 2 Median 2.0183 2.153 3.501 2 0 Median NaN NaN NaN 0 0 Median 40507000 15067000 25439000 40507000 15067000 25439000 0 0 0 11825 749 12148 31122;31123 48506;48507 48507 2 SGLVPQQIK SSVAVLTQESFAEHRSGLVPQQIKVATLNS SFAEHRSGLVPQQIKVATLNSEEESDPPTY R S G I K V 0 0 0 0 0 2 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 968.56548 A0A024R4E5;Q00341;B2R5V9;B4DKR8;C9J5E5;C9JIZ1;C9JZI8;C9JHS7;C9JHZ8;C9JES8;C9JT62;C9JK79;C9JMQ6;C9JQ82;C9JBS3;C9JEJ8;C9JHN6 A0A024R4E5 17 25 HDLBP Vigilin yes no 2 0.015615 54.611 1 2.3057 2.345 NaN 1 Median 2.3057 2.345 NaN 1 0 Median NaN NaN NaN 0 0 Median 30320000 9182800 21137000 30320000 9182800 21137000 0 0 0 11826 154 12149 31124 48508 48508 1 SGMSHEEDQLIPNLYR LRWSKQTDVGITHFRSGMSHEEDQLIPNLY GMSHEEDQLIPNLYRYIQPWESEFIDSQRV R S G Y R Y 0 1 1 1 0 1 2 1 1 1 2 0 1 0 1 2 0 0 1 0 0 0 16 0 1887.8785 Q6P2Q9;B4DK16 Q6P2Q9 1355 1370 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.00062017 40.857 1 1.142 1.2507 NaN 1 Median 1.142 1.2507 NaN 1 0 Median NaN NaN NaN 0 0 Median 31075000 14681000 16394000 31075000 14681000 16394000 0 0 0 11827 1854 12150 31125 48509 48509 1715 1 SGNELPLAVASTADLIR LQRYALNRITVWRSRSGNELPLAVASTADL NELPLAVASTADLIRCKLLDVTGGLGTDEL R S G I R C 3 1 1 1 0 0 1 1 0 1 3 0 0 0 1 2 1 0 0 1 0 0 17 0 1725.9261 Q9Y4W2;B7Z381 Q9Y4W2 80 96 LAS1L Ribosomal biogenesis protein LAS1L yes no 2 1.1597E-06 89.507 2 1 1.2135 1.2501 24.318 3 Plateau 1.2135 1.2501 14.473 2 0 Median 1.0202 0.85313 NaN 1 0 Median 45324000 20153000 25171000 41528000 18318000 23210000 3796100 1835700 1960400 11828 2146 12151 31126;31127;31128 48510;48511;48512;48513;48514;48515 48512 6 SGNIVAGIANESK DSVDKVADGFKVVARSGNIVAGIANESKKL ARSGNIVAGIANESKKLYGAQFHPEVGLTE R S G S K K 2 0 2 0 0 0 1 2 0 2 0 1 0 0 0 2 0 0 0 1 0 0 13 0 1258.6517 B4DUT7;A0A140VJK6;P49915;Q53F90 B4DUT7 119 131 GMPS GMP synthase [glutamine-hydrolyzing] yes no 2 0.0044289 60.49 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15146000 0 15146000 15146000 0 15146000 0 0 0 11829 604 12152 31129;31130;31131;31132 48516;48517;48518;48519 48517 4 SGNNETFTPNRVEK QEQPSRNSSLLEPQKSGNNETFTPNRVEKK KSGNNETFTPNRVEKKKLQHTYLCEEKENN K S G E K K 0 1 3 0 0 0 2 1 0 0 0 1 0 1 1 1 2 0 0 1 0 0 14 1 1591.759 Q6P0N0;G5E9K5;C9J2Q8 Q6P0N0 142 155 MIS18BP1 Mis18-binding protein 1 yes no 2;3 0.00012359 97.214 2 0.69974 0.79053 NaN 1 Median 0.69974 0.79053 NaN 1 0 Median NaN NaN NaN 0 0 Median 20552000 8125400 12426000 20552000 8125400 12426000 0 0 0 11830 1849 12153 31133;31134 48520;48521 48521 2 SGNPLQPVSIENR KCTGDFSPSPEKLVKSGNPLQPVSIENRNL VKSGNPLQPVSIENRNLDLKHLVLESSEPP K S G N R N 0 1 2 0 0 1 1 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 13 0 1409.7263 Q5VWN6 Q5VWN6 1548 1560 FAM208B Protein FAM208B yes yes 2 0.00012183 77.387 1 1 1.3293 1.2217 10.64 2 Median 1.1211 1.1332 NaN 1 0 Median 1.5762 1.3172 NaN 1 0 Median 13071000 6662000 6409000 9651700 5520500 4131200 3419400 1141600 2277800 11831 1833 12154 31135;31136 48522;48523 48522 2 SGPASTFNDR VEWVKEMVANWDSLRSGPASTFNDRVFASE WDSLRSGPASTFNDRVFASELNAGIIKTDQ R S G D R V 1 1 1 1 0 0 0 1 0 0 0 0 0 1 1 2 1 0 0 0 0 0 10 0 1050.473 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;Q9NVP8;Q9NVC0 B4E266 740 749 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.00095587 78.516 2 1.4202 1.5125 9.4724 2 Median 1.4202 1.5125 9.4724 2 0 Median NaN NaN NaN 0 0 Median 56866000 23941000 32925000 56866000 23941000 32925000 0 0 0 11832 883 12155 31137;31138 48524;48525;48526 48524 3 SGPFGQIFRPDNFVFGQSGAGNNWAK AILVDLEPGTMDSVRSGPFGQIFRPDNFVF NFVFGQSGAGNNWAKGHYTEGAELVDSVLD R S G A K G 2 1 3 1 0 2 0 5 0 1 0 1 0 4 2 2 0 1 0 1 0 0 26 1 2797.3361 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;B4DQN9;B4DMJ5;Q8IZ29;P68371;Q8N6N5;Q8IWP6;M0QY85;M0QZL7;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;A5D907;A5D906;A1L195;P04350;B4DE77;B4DJ43;M0R278;M0R1I1 Q5JP53 60 85 TUBB;TUBB2C;TUBB4B;TUBB4A;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 3 7.2811E-150 231.29 2 2 1.3626 1.3756 22.041 4 Median 1.3895 1.6705 1.4038 2 0 Median 1.2996 1.1407 0.41685 2 0 Median 1122900000 461020000 661840000 902900000 368800000 534100000 219960000 92217000 127740000 11833 1452;1660;1723;1441 12156 31139;31140;31141;31142 48527;48528;48529;48530;48531;48532;48533;48534;48535;48536;48537;48538;48539;48540 48534 14 SGPPAPEEEEEEER EEPTMKTSKKGSKKKSGPPAPEEEEEEERQ KSGPPAPEEEEEEERQSGNTEQKSKSKQHR K S G E R Q 1 1 0 0 0 0 7 1 0 0 0 0 0 0 3 1 0 0 0 0 0 0 14 0 1583.6587 Q9NTI5;A9IYQ1 Q9NTI5 1319 1332 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2 0.00016295 74.611 3 0.68376 0.68152 NaN 1 Median 0.68376 0.68152 NaN 1 0 Median NaN NaN NaN 0 0 Median 12196000 7647100 4549000 12196000 7647100 4549000 0 0 0 11834 2069 12157 31143;31144;31145 48541;48542;48543;48544 48544 4 SGPPAPEEEEEEERQSGNTEQK EEPTMKTSKKGSKKKSGPPAPEEEEEEERQ EEEEEERQSGNTEQKSKSKQHRVSRRAQQR K S G Q K S 1 1 1 0 0 2 8 2 0 0 0 1 0 0 3 2 1 0 0 0 0 0 22 1 2456.0575 Q9NTI5;A9IYQ1 Q9NTI5 1319 1340 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.020333 20.625 1 1 0.69469 0.67713 36.181 2 Median 0.79148 0.87454 NaN 1 0 Median 0.60973 0.52428 NaN 1 0 Median 9546800 5085300 4461500 7054000 3720800 3333100 2492900 1364500 1128400 11835 2069 12158 31146;31147 48545;48546 48545 2 SGPPEGGSVAVQDADIEK AGGDTVTLDDILSLKSGPPEGGSVAVQDAD PEGGSVAVQDADIEKRKGEVASDLVSPANQ K S G E K R 2 0 0 2 0 1 2 3 0 1 0 1 0 0 2 2 0 0 0 2 0 0 18 0 1754.8323 W5ZR30;Q9UGU0 W5ZR30 1390 1407 TCF20 Transcription factor 20 yes no 2 5.2196E-12 108.71 1 1 1.1984 1.0639 45.224 2 Median 0.77211 0.77274 NaN 1 0 Median 1.86 1.4649 NaN 1 0 Median 19778000 9565000 10213000 13984000 7774600 6209100 5794100 1790400 4003700 11836 2100 12159 31148;31149 48547;48548 48547 2 SGPSLNELIPDGYNR TCTGFQKETLTFLKKSGPSLNELIPDGYNR SGPSLNELIPDGYNRCLVAGLLSPRFVDVQ K S G N R C 0 1 2 1 0 0 1 2 0 1 2 0 0 0 2 2 0 0 1 0 0 0 15 0 1630.7951 Q8WYP5 Q8WYP5 506 520 AHCTF1 Protein ELYS yes yes 2 2.1171E-30 153.74 2 2.1196 1.8156 2.5771 2 Median NaN NaN NaN 0 0 Median 2.1196 1.8156 2.5771 2 0 Median 58998000 18353000 40645000 0 0 0 58998000 18353000 40645000 11837 1945 12160 31150;31151 48549;48550;48551;48552 48551 4 SGQGAFGNMCR AVARIPRVRGGGTHRSGQGAFGNMCRGGRM GTHRSGQGAFGNMCRGGRMFAPTKTWRRWH R S G C R G 1 1 1 0 1 1 0 3 0 0 0 0 1 1 0 1 0 0 0 0 0 0 11 0 1183.4863 P36578;Q59GY2;B4DMJ6;B4DFI6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 87 97 RPL4 60S ribosomal protein L4 yes no 2 0.00084542 72.042 1 1 0.81111 0.74194 38.157 2 Median 0.5692 0.56649 NaN 1 0 Median 1.1558 0.97173 NaN 1 0 Median 12494000 6209400 6284700 8092200 3955300 4136800 4401900 2254100 2147800 11838 1548 12161 31152;31153 48553;48554;48555 48554 3 SGQVYSFGCNDEGALGR VQAEAGGMHTVCLSKSGQVYSFGCNDEGAL QVYSFGCNDEGALGRDTSVEGSEMVPGKVE K S G G R D 1 1 1 1 1 1 1 4 0 0 1 0 0 1 0 2 0 0 1 1 0 0 17 0 1815.7846 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 85 101 RCC1 Regulator of chromosome condensation yes no 2 2.6581E-07 97.69 2 2 0.82309 0.80814 2.9413 4 Median 0.72079 0.79319 4.0705 2 0 Median 0.94186 0.81159 2.0308 2 0 Median 157170000 86087000 71084000 92997000 53364000 39633000 64173000 32722000 31451000 11839 550 12162 31154;31155;31156;31157 48556;48557;48558;48559;48560;48561;48562;48563;48564;48565;48566 48558 11 SGSGTMNLGGSLTR YKLTSTVMLWLQTNKSGSGTMNLGGSLTRQ KSGSGTMNLGGSLTRQMEKDETVSDCSPHI K S G T R Q 0 1 1 0 0 0 0 4 0 0 2 0 1 0 0 3 2 0 0 0 0 0 14 0 1336.6405 B1AK87;B1AK85;B2R7T8;B1AK88;B4DWA6;P47756 B1AK87 170 183 CAPZB F-actin-capping protein subunit beta yes no 2 5.8643E-05 81.676 2 1.6677 1.7545 2.0759 2 Median 1.6677 1.7545 2.0759 2 0 Median NaN NaN NaN 0 0 Median 40491000 18117000 22374000 40491000 18117000 22374000 0 0 0 11840 814 12163 31158;31159 48567;48568;48569 48568 649 3 SGSHTVAVMNVGAPAAGMNAAVR EVYKLLAHVRPPVSKSGSHTVAVMNVGAPA MNVGAPAAGMNAAVRSTVRIGLIQGNRVLV K S G V R S 6 1 2 0 0 0 0 3 1 0 0 0 2 0 1 2 1 0 0 4 0 0 23 0 2167.0626 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;Q7KYX9 A0A024R0Y5 398 420 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 3 0.0014496 40.381 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11841 61 12164 31160 48570 48570 31;32 1 SGSLVQFLLYK STSTKSPSEDPLTRKSGSLVQFLLYKYIIK LTRKSGSLVQFLLYKYIIKKSVTKGEMLKI K S G Y K Y 0 0 0 0 0 1 0 1 0 0 3 1 0 1 0 2 0 0 1 1 0 0 11 0 1253.702 Q53G50;B2R8F3;O15479 Q53G50 115 125 MAGEB2 Melanoma-associated antigen B2 yes no 2 6.444E-12 124.98 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6499500 0 6499500 6499500 0 6499500 0 0 0 11842 861 12165 31161;31162 48571;48572 48572 2 SGSMDPSGAHPSVR RRDDPAARMSRSSGRSGSMDPSGAHPSVRQ RSGSMDPSGAHPSVRQTPSRQPPLPHRSRG R S G V R Q 1 1 0 1 0 0 0 2 1 0 0 0 1 0 2 4 0 0 0 1 0 0 14 0 1383.6201 B4DDX2;Q07666;B2R7B5 B4DDX2 18 31 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 2;3 0.00010996 65.5 4 1.6307 1.6997 5.3951 4 Median 1.6307 1.6997 5.3951 4 0 Median NaN NaN NaN 0 0 Median 35497000 13006000 22491000 35497000 13006000 22491000 0 0 0 11843 962 12166 31163;31164;31165;31166 48573;48574;48575;48576;48577 48576 775 5 SGSPAVLAFAK RVFGAPEVLENLEVKSGSPAVLAFAKEKSF LEVKSGSPAVLAFAKEKSFGWPSFITYTVG K S G A K E 3 0 0 0 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 1 0 0 11 0 1046.576 Q8TEM1 Q8TEM1 1725 1735 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.010605 48.794 1 0.66529 0.65488 NaN 1 Median 0.66529 0.65488 NaN 1 0 Median NaN NaN NaN 0 0 Median 9099700 4454300 4645400 9099700 4454300 4645400 0 0 0 11844 1937 12167 31167 48578 48578 1 SGSPVATFK GDDGALKIWDLRQFKSGSPVATFKQHVAPV DLRQFKSGSPVATFKQHVAPVTSVEWHPQD K S G F K Q 1 0 0 0 0 0 0 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 9 0 892.46543 Q8NCK5;Q9BQ67;Q8TCJ8;B2RDP6;B4DTI1 Q8NCK5 342 350 GRWD1;DKFZp564C172 Glutamate-rich WD repeat-containing protein 1 yes no 2 0.012923 60.828 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11845 1922 12168 31168 48579 48579 1 SGSSQELDVKPSASPQER DQKTVARTPLGQRSRSGSSQELDVKPSASP SQELDVKPSASPQERSESDSSPDSKAKTRT R S G E R S 1 1 0 1 0 2 2 1 0 0 1 1 0 0 2 5 0 0 0 1 0 0 18 1 1900.9126 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1539 1556 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 3 2.5288E-05 47.726 1 1 0.7309 0.72875 34.424 2 Median 0.83562 0.9296 NaN 1 0 Median 0.6393 0.5713 NaN 1 0 Median 12792000 6328600 6463600 10685000 5158900 5526400 2106900 1169700 937280 11846 619 12169 31169;31170 48580;48581;48582 48581 3 SGTALPSYR DKVKLMKFSRPKKTRSGTALPSYRKFVTKS RPKKTRSGTALPSYRKFVTKSSKKSIFVLP R S G Y R K 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 2 1 0 1 0 0 0 9 0 950.48214 E7ETD6;Q12830;F5GXF5 E7ETD6 1688 1696 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0073059 62.107 1 0.87889 0.96131 NaN 1 Median 0.87889 0.96131 NaN 1 0 Median NaN NaN NaN 0 0 Median 34529000 19133000 15396000 34529000 19133000 15396000 0 0 0 11847 1224 12170 31171 48583 48583 1 SGTGFGESYSLANPSIR DAKESRAAALRAANKSGTGFGESYSLANPS TGFGESYSLANPSIRAGEDIPQPTIFNGKL K S G I R A 1 1 1 0 0 0 1 3 0 1 1 0 0 1 1 4 1 0 1 0 0 0 17 0 1741.8271 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 487 503 INOC1;INO80 DNA helicase INO80 yes no 2 0.0086258 45.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11848 288 12171 31172 48584 48584 1 SGTLACTGSLVNNTANDR DGRRDIIRAVGAYSKSGTLACTGSLVNNTA LACTGSLVNNTANDRKMYFLTAHHCGMGTA K S G D R K 2 1 3 1 1 0 0 2 0 0 2 0 0 0 0 2 3 0 0 1 0 0 18 0 1849.8588 CON__P15636 CON__P15636 236 253 yes yes 2 2.27E-66 174.39 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 477090000 477090000 0 404900000 404900000 0 72195000 72195000 0 + 11849 1163 12172 31173;31174;31175;31176 48585;48586;48587;48588 48586 4 SGTLACTGSLVNNTANDRK DGRRDIIRAVGAYSKSGTLACTGSLVNNTA ACTGSLVNNTANDRKMYFLTAHHCGMGTAS K S G R K M 2 1 3 1 1 0 0 2 0 0 2 1 0 0 0 2 3 0 0 1 0 0 19 1 1977.9538 CON__P15636 CON__P15636 236 254 yes yes 2;3 4.549E-54 163.18 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 462320000 462320000 0 382070000 382070000 0 80243000 80243000 0 + 11850 1163 12173 31177;31178;31179;31180;31181;31182 48589;48590;48591;48592;48593;48594;48595 48591 7 SGVAYIAAPSGSAADK DAFFPFRDNVDRAKRSGVAYIAAPSGSAAD GVAYIAAPSGSAADKVVIEACDELGIILAH R S G D K V 5 0 0 1 0 0 0 2 0 1 0 1 0 0 1 3 0 0 1 1 0 0 16 0 1463.7256 V9HWH7;B2R7P8;P31939;B4DP06 V9HWH7 554 569 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.00013565 76.522 2 2.0222 2.0908 NaN 1 Median 2.0222 2.0908 NaN 1 0 Median NaN NaN NaN 0 0 Median 12739000 5427000 7311600 12739000 5427000 7311600 0 0 0 11851 852 12174 31183;31184 48596;48597 48596 2 SGVDGPHFPLSLSTCLFGR ______________________________ GPHFPLSLSTCLFGRGIECDIRIQLPVVSK R S G G R G 0 1 0 1 1 0 0 3 1 0 3 0 0 2 2 3 1 0 0 1 0 0 19 0 2045.9993 P46013;Q70L72;Q70L73 P46013 13 31 MKI67 Antigen KI-67 no no 3 7.4814E-23 125.45 2 2 3.1526 3.1852 45.106 4 Median 1.8626 2.1778 3.541 2 0 Median 5.4623 4.7418 6.0398 2 0 Median 735350000 224710000 510640000 539010000 197340000 341680000 196330000 27370000 168960000 11852 1569;1864 12175 31185;31186;31187;31188 48598;48599;48600;48601;48602;48603;48604 48600 7 SGVGNIFIK PVRIMWSQRDPSLRKSGVGNIFIKNLDKSI DPSLRKSGVGNIFIKNLDKSIDNKALYDTF K S G I K N 0 0 1 0 0 0 0 2 0 2 0 1 0 1 0 1 0 0 0 1 0 0 9 0 933.52837 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;B3KT93;A0A024R9E2;Q4VXU2;E5RGH3;E5RJB9;E5RH24;B4DM75;Q96DU9 A0A087WTT1 71 79 PABPC1;PABPC1L;PABPC5 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5 yes no 2 0.00085338 98.904 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11853 273 12176 31189 48605 48605 1 SGVGNVFIK PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI DPSLRKSGVGNVFIKNLDKSIDNKALYDTF K S G I K N 0 0 1 0 0 0 0 2 0 1 0 1 0 1 0 1 0 0 0 2 0 0 9 0 919.51272 B1ANR0;Q6IQ30;Q13310;B1ANR1;H0YEQ8 B1ANR0 96 104 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2 0.00017584 93.374 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32042000 0 32042000 32042000 0 32042000 0 0 0 11854 818 12177 31190 48606 48606 1 SGVLDESTIATILR VLDIIKHIVAKGEHKSGVLDESTIATILRE KSGVLDESTIATILREVLEGLEYLHKNGQI K S G L R E 1 1 0 1 0 0 1 1 0 2 2 0 0 0 0 2 2 0 0 1 0 0 14 0 1473.8039 A0A024R2M7;O95747;C9JIG9 A0A024R2M7 115 128 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 6.7699E-38 171.62 2 2 1.5345 2.0738 38.715 4 Linear 1.8058 1.9153 1.513 2 0 Median 1.1862 0.99511 14.398 2 0 Median 60160000 24899000 35261000 49051000 20004000 29048000 11108000 4895000 6213400 11855 117 12178 31191;31192;31193;31194 48607;48608;48609;48610;48611;48612;48613;48614 48607 8 SGVNSELVK NAMLKSICEVLDLERSGVNSELVKRILNFL VLDLERSGVNSELVKRILNFLMHPKPSGKP R S G V K R 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 9 0 931.49746 B4DNW3;P35659;B4DFG0;D6RDA2;H0Y8X0 P35659 169 177 DEK Protein DEK no no 2 6.13E-06 131.41 2 2 0.78369 0.92448 17.63 4 Linear 0.75594 0.89333 3.3672 2 0 Median 0.79674 0.65952 0.5637 2 0 Median 1347500000 783710000 563830000 1268900000 739120000 529800000 78621000 44590000 34030000 11856 1546;1018 12179 31195;31196;31197;31198 48615;48616;48617;48618;48619;48620;48621;48622 48617 8 SGVNSELVKR NAMLKSICEVLDLERSGVNSELVKRILNFL LDLERSGVNSELVKRILNFLMHPKPSGKPL R S G K R I 0 1 1 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 10 1 1087.5986 P35659;B4DFG0;D6RDA2;H0Y8X0 P35659 169 178 DEK Protein DEK yes no 2 0.00061089 88.681 2 2 0.66227 0.65144 4.1109 4 Median 0.54488 0.62715 3.1413 2 0 Median 0.78785 0.6677 1.2514 2 0 Median 70275000 41505000 28770000 52106000 31754000 20352000 18169000 9751200 8417700 11857 1546 12180 31199;31200;31201;31202 48623;48624;48625;48626 48624 4 SGVSITIDDPVR TLGDTLTRRSISQQKSGVSITIDDPVRTAQ QQKSGVSITIDDPVRTAQVPSPPRGKISNI K S G V R T 0 1 0 2 0 0 0 1 0 2 0 0 0 0 1 2 1 0 0 2 0 0 12 0 1257.6565 G3V3B0;Q69YJ6;S4R3H4;E7EQT4;Q9UKV3;B4DQZ7 G3V3B0 228 239 ACIN1;DKFZp667N107 Apoptotic chromatin condensation inducer in the nucleus yes no 2 8.149E-07 107.24 2 1.1511 1.237 NaN 1 Median 1.1511 1.237 NaN 1 0 Median NaN NaN NaN 0 0 Median 47076000 23457000 23619000 47076000 23457000 23619000 0 0 0 11858 1220 12181 31203;31204 48627;48628;48629;48630 48630 4 SGVSLAALK VSELITKVVAASKERSGVSLAALKKALAAA AASKERSGVSLAALKKALAAAGYDVEKNNS R S G L K K 2 0 0 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 9 0 844.50182 Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16402;P16403 Q4VB24 55 63 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 1;2 5.5076E-06 132.08 7 3 0.91897 0.99913 40.193 9 Median 0.94861 1.1189 20.936 6 0 Median 0.58407 0.51775 11.611 3 0 Median 14779000000 7533100000 7245500000 12744000000 6309000000 6434600000 2035000000 1224100000 810890000 11859 656;1490 12182 31205;31206;31207;31208;31209;31210;31211;31212;31213;31214 48631;48632;48633;48634;48635;48636;48637;48638;48639;48640;48641;48642;48643;48644;48645;48646;48647;48648;48649;48650;48651;48652 48632 21 SGVSLAALKK VSELITKVVAASKERSGVSLAALKKALAAA ASKERSGVSLAALKKALAAAGYDVEKNNSR R S G K K A 2 0 0 0 0 0 0 1 0 0 2 2 0 0 0 2 0 0 0 1 0 0 10 1 972.59678 Q4VB24;B2R984;A3R0T8;P10412;A3R0T7;P16402;P16403 Q4VB24 55 64 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 0.00018754 96.948 2 2 0.9085 0.90653 59.319 4 Median 1.3176 1.5417 12.383 2 0 Median 0.65473 0.55701 6.1595 2 0 Median 468510000 261560000 206950000 109600000 50170000 59434000 358910000 211390000 147510000 11860 656;1490 12183 31215;31216;31217;31218 48653;48654;48655;48656;48657 48654 4 SGYFALGNEK NKNISHVHTMDFSPRSGYFALGNEKARP__ DFSPRSGYFALGNEKARP____________ R S G E K A 1 0 1 0 0 0 1 2 0 0 1 1 0 1 0 1 0 0 1 0 0 0 10 0 1084.5189 B2RAX6;Q9Y5J1 B2RAX6 509 518 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 5.7859E-12 143.7 2 1.0643 1.2062 5.5657 2 Median 1.0643 1.2062 5.5657 2 0 Median NaN NaN NaN 0 0 Median 230950000 115600000 115360000 230950000 115600000 115360000 0 0 0 11861 876 12184 31219;31220 48658;48659;48660;48661;48662 48662 5 SGYGFNEPEQSR SYDSRSSLGGRDLYRSGYGFNEPEQSRFGG LYRSGYGFNEPEQSRFGGSYGGRFESSYRN R S G S R F 0 1 1 0 0 1 2 2 0 0 0 0 0 1 1 2 0 0 1 0 0 0 12 0 1369.5899 Q5BKZ1 Q5BKZ1 91 102 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 1.1889E-22 155.11 2 2 1.5439 1.6417 22.24 4 Linear 1.5198 1.6063 9.6978 2 0 Median 1.2987 1.1121 6.1689 2 0 Median 80878000 34952000 45925000 71580000 31151000 40429000 9297700 3801700 5496000 11862 1804 12185 31221;31222;31223;31224 48663;48664;48665;48666;48667;48668 48666 6 SGYISESENSEISQQVR MSICVPSETVDEIVKSGYISESENSEISQQ YISESENSEISQQVRFKTVTVLAQVHPIPP K S G V R F 0 1 1 0 0 2 3 1 0 2 0 0 0 0 0 5 0 0 1 1 0 0 17 0 1911.881 Q96QE3;H0UIC2;A0A075B754 Q96QE3 302 318 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 7.6938E-05 81.494 3 2 2.6577 2.4303 21.469 4 Median 2.0471 2.0581 1.5578 2 0 Median 3.5178 2.968 6.3201 2 0 Median 28950000 9932900 19017000 17312000 7136300 10175000 11638000 2796600 8841600 11863 1984 12186 31225;31226;31227;31228;31229 48669;48670;48671;48672;48673;48674 48671 6 SGYSLNFSEGDGR FTQKPGFPKRGQKRKSGYSLNFSEGDGRRR RKSGYSLNFSEGDGRRRRVLLRGRESPAAG K S G G R R 0 1 1 1 0 0 1 3 0 0 1 0 0 1 0 3 0 0 1 0 0 0 13 0 1387.6004 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1715 1727 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.0010478 59.418 2 2 1.9962 1.6974 37.35 3 Median 0.90033 0.89154 NaN 1 0 Median 2.0118 1.7025 0.42311 2 0 Median 29258000 17854000 11404000 22032000 15020000 7012100 7226100 2834200 4391900 11864 1260 12187 31230;31231;31232;31233 48675;48676;48677;48678;48679 48677 5 SHAIFTISLEQR SRTVASTAMNSQSSRSHAIFTISLEQRKKS SSRSHAIFTISLEQRKKSDKNSSFRSKLHL R S H Q R K 1 1 0 0 0 1 1 0 1 2 1 0 0 1 0 2 1 0 0 0 0 0 12 0 1400.7412 Q59HG1;O95239;Q6PKB2 Q59HG1 215 226 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 0.00015712 92.445 4 1.2279 1.0262 19.467 4 Median NaN NaN NaN 0 0 Median 1.2279 1.0262 19.467 4 0 Median 67592000 29112000 38480000 0 0 0 67592000 29112000 38480000 11865 1803 12188 31234;31235;31236;31237 48680;48681;48682;48683;48684;48685;48686;48687;48688;48689 48685 10 SHAVACVNQFIISR PKFLQFFKHSSPKIRSHAVACVNQFIISRT RSHAVACVNQFIISRTQALMLHIDSFIENL R S H S R T 2 1 1 0 1 1 0 0 1 2 0 0 0 1 0 2 0 0 0 2 0 0 14 0 1600.8144 A0A024RAM0;Q92973 A0A024RAM0 200 213 TNPO1 Transportin-1 yes no 3 0.0046348 71.279 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11866 309 12189 31238 48690 48690 1 SHAVGPQEIR TRDDCFKGKRWGAQKSHAVGPQEIRERATV WGAQKSHAVGPQEIRERATVLQTVFEDYVH K S H I R E 1 1 0 0 0 1 1 1 1 1 0 0 0 0 1 1 0 0 0 1 0 0 10 0 1092.5676 B4DYZ1;F8WAJ0;Q9H8H2 B4DYZ1 549 558 DDX31 Probable ATP-dependent RNA helicase DDX31 no no 2;3 0.00023762 92.838 2 2 1.0312 0.9918 10.96 4 Median 0.91679 0.96619 13.353 2 0 Median 1.1514 1.013 12.637 2 0 Median 17448000 8705800 8742500 14673000 7487500 7185200 2775700 1218300 1557400 11867 1053;1268 12190 31239;31240;31241;31242 48691;48692;48693;48694;48695;48696 48692 6 SHAVLLVK NRTVGATRLNQRSSRSHAVLLVKVDQRERL LNQRSSRSHAVLLVKVDQRERLAPFRQREG R S H V K V 1 0 0 0 0 0 0 0 1 0 2 1 0 0 0 1 0 0 0 2 0 0 8 0 865.53854 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 246 253 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.0044591 93.561 1 1 1.2838 1.1545 27.995 2 Median 0.92498 0.94717 NaN 1 0 Median 1.7818 1.4072 NaN 1 0 Median 33709000 15473000 18236000 28445000 13614000 14831000 5263400 1858400 3405000 11868 1745 12191 31243;31244 48697;48698 48697 2 SHDTTSNTLAQLLAK GSVRRIQSGLGALSRSHDTTSNTLAQLLAK SHDTTSNTLAQLLAKAERVSSHANAAQERA R S H A K A 2 0 1 1 0 1 0 0 1 0 3 1 0 0 0 2 3 0 0 0 0 0 15 0 1598.8264 E9PIE3;Q969G5 E9PIE3 70 84 PRKCDBP Protein kinase C delta-binding protein yes no 2 0.010547 47.352 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11869 1239 12192 31245 48699 48699 1 SHEGETAYIR DMTYAVRKLDNTKFRSHEGETAYIRVKVDG NTKFRSHEGETAYIRVKVDGPRSPSYGRSR R S H I R V 1 1 0 0 0 0 2 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 10 0 1161.5415 J3KTL2;Q07955;A8K1L8;J3KSR8;B7Z570 J3KTL2 182 191 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2;3 7.1995E-31 186.16 4 2 1.2815 1.3588 41.46 6 Median 1.3267 1.4724 8.1627 4 0 Median 0.76501 0.65867 4.292 2 0 Median 745540000 329870000 415670000 683360000 295380000 387980000 62183000 34491000 27692000 11870 1333 12193 31246;31247;31248;31249;31250;31251 48700;48701;48702;48703;48704;48705;48706;48707;48708;48709 48702 10 SHEGETSYIR DMEYALRKLDDTKFRSHEGETSYIRVYPER DTKFRSHEGETSYIRVYPERSTSYGYSRSR R S H I R V 0 1 0 0 0 0 2 1 1 1 0 0 0 0 0 2 1 0 1 0 0 0 10 0 1177.5364 Q13242;A8K3M9 Q13242 172 181 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.0006376 83.647 1 0.88929 0.76053 NaN 1 Median NaN NaN NaN 0 0 Median 0.88929 0.76053 NaN 1 0 Median 3271900 1112300 2159600 0 0 0 3271900 1112300 2159600 11871 1709 12194 31252 48710 48710 1 SHFIVALK GKGKFGNVYLAREKKSHFIVALKVLFKSQI YLAREKKSHFIVALKVLFKSQIEKEGVEHQ K S H L K V 1 0 0 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 1 0 0 8 0 913.53854 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41;J3KRJ2 Q96GD4 99 106 AURKB Aurora kinase B no no 2 0.0022722 101.28 1 2 2.0239 1.6215 19.45 3 Median 1.0725 1.2014 NaN 1 0 Median 2.0789 1.6748 4.5732 2 0 Median 155660000 68559000 87102000 111410000 55044000 56366000 44251000 13515000 30736000 11872 881;1967 12195 31253;31254;31255 48711;48712;48713;48714;48715 48714 5 SHGFAAEFK YLNTNPVGGLLEYARSHGFAAEFKLVDQSG LLEYARSHGFAAEFKLVDQSGPPHEPKFVY R S H F K L 2 0 0 0 0 0 1 1 1 0 0 1 0 2 0 1 0 0 0 0 0 0 9 0 992.47158 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 737 745 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.049326 38.303 1 1.0135 0.84537 NaN 1 Median NaN NaN NaN 0 0 Median 1.0135 0.84537 NaN 1 0 Median 1722100 865870 856180 0 0 0 1722100 865870 856180 11873 5 12196 31256 48716 48716 1 SHGIDLDHNR SGKKKTFKDVGNLLRSHGIDLDHNRFLILQ GNLLRSHGIDLDHNRFLILQGEVEQIAMMK R S H N R F 0 1 1 2 0 0 0 1 2 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1162.5479 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 215 224 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 2.4007E-06 106.88 3 0.85159 0.87116 3.5722 3 Median 0.85159 0.87116 3.5722 3 0 Median NaN NaN NaN 0 0 Median 74315000 39608000 34707000 74315000 39608000 34707000 0 0 0 11874 2070 12197 31257;31258;31259 48717;48718;48719;48720;48721 48720 5 SHILPHPVVVADLLK PLSRAEAAGLIGWLKSHILPHPVVVADLLK SHILPHPVVVADLLKDSAVRSSIFRLYSRL K S H L K D 1 0 0 1 0 0 0 0 2 1 3 1 0 0 2 1 0 0 0 3 0 0 15 0 1636.9665 O60287 O60287 2127 2141 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 1.4004E-07 103.39 2 1.4474 1.1782 0.04785 2 Median NaN NaN NaN 0 0 Median 1.4474 1.1782 0.04785 2 0 Median 19854000 8095400 11758000 0 0 0 19854000 8095400 11758000 11875 1392 12198 31260;31261 48722;48723;48724;48725 48725 4 SHILTHAK FDGCNKKFAQSTNLKSHILTHAKAKNNQ__ AQSTNLKSHILTHAKAKNNQ__________ K S H A K A 1 0 0 0 0 0 0 0 2 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 905.5083 P25490;H0YJV7 P25490 402 409 YY1 Transcriptional repressor protein YY1 yes no 2 0.031343 51.346 2 0.7353 0.76878 11.173 2 Median 0.7353 0.76878 11.173 2 0 Median NaN NaN NaN 0 0 Median 14128000 7705700 6421900 14128000 7705700 6421900 0 0 0 11876 1516 12199 31262;31263 48726;48727 48727 2 SHIPGSETDR KRKSSSVTSSGEDSKSHIPGSETDRTFSSE GEDSKSHIPGSETDRTFSSESTLAQKATAE K S H D R T 0 1 0 1 0 0 1 1 1 1 0 0 0 0 1 2 1 0 0 0 0 0 10 0 1097.5102 Q9NSI6 Q9NSI6 2058 2067 BRWD1 Bromodomain and WD repeat-containing protein 1 yes yes 2 0.0022766 69.825 1 0.92302 0.94783 NaN 1 Median 0.92302 0.94783 NaN 1 0 Median NaN NaN NaN 0 0 Median 6454200 3289200 3165000 6454200 3289200 3165000 0 0 0 11877 2068 12200 31264 48728 48728 1 SHISDQSPLSSK CGREKSGIQPLCPERSHISDQSPLSSKRKA PERSHISDQSPLSSKRKALEESESSQLISP R S H S K R 0 0 0 1 0 1 0 0 1 1 1 1 0 0 1 5 0 0 0 0 0 0 12 0 1284.631 P42166 P42166 345 356 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 3.8341E-29 164.48 2 1 1.2444 1.1822 12.233 2 Median 1.2225 1.289 NaN 1 0 Median 1.2666 1.0842 NaN 1 0 Median 31987000 17894000 14093000 30572000 17244000 13328000 1414600 649790 764840 11878 1562 12201 31265;31266;31267 48729;48730;48731;48732;48733 48731 5 SHLFFTAGK FAHDDSVMYLQFVPKSHLFFTAGKDHKIKQ LQFVPKSHLFFTAGKDHKIKQWDADKFEHI K S H G K D 1 0 0 0 0 0 0 1 1 0 1 1 0 2 0 1 1 0 0 0 0 0 9 0 1006.5236 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 645 653 WDR3 WD repeat-containing protein 3 yes no 2 7.7315E-08 142.04 2 2 0.94607 1.0377 1.7247 3 Median 0.92854 1.052 1.9439 2 0 Median 1.3295 1.0332 NaN 1 0 Median 261420000 125910000 135500000 237690000 119180000 118500000 23730000 6730300 17000000 11879 1827 12202 31268;31269;31270;31271 48734;48735;48736;48737;48738;48739 48735 6 SHLIQVER QSMQLEERAEQIRSKSHLIQVEREKMQMEL AEQIRSKSHLIQVEREKMQMELSHKRARVE K S H E R E 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 980.54033 A4D218;Q9Y6D9;C9JJ38 A4D218 62 69 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 2 0.052162 53.968 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11880 668 12203 31272 48740 48740 1 SHLLSSSDAEGNYR VIMEDFNERNSSETKSHLLSSSDAEGNYRD KSHLLSSSDAEGNYRDSLETLPSTKESDST K S H Y R D 1 1 1 1 0 0 1 1 1 0 2 0 0 0 0 4 0 0 1 0 0 0 14 0 1534.7012 E7ETD6;Q12830;F5GXF5 E7ETD6 1472 1485 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.002706 60.49 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2417900 2417900 0 2417900 2417900 0 0 0 0 11881 1224 12204 31273;31274 48741;48742 48741 2 SHPLDPIDTVDFER IHTEPQLSAALEYVRSHPLDPIDTVDFERE RSHPLDPIDTVDFERECGVGVIVTPEQIEE R S H E R E 0 1 0 3 0 0 1 0 1 1 1 0 0 1 2 1 1 0 0 1 0 0 14 0 1639.7842 Q53HS0;P47897;A8K3A8;Q96AW5;A0A1B0GVU9;B4DTH6;A0A0U1RQM8;A0A0U1RQU2;B7Z840;A0A0U1RQT0;A0A0U1RRI9;A0A0U1RQE9;A0A0U1RQL2;C9J165 Q53HS0 96 109 QARS Glutamine--tRNA ligase yes no 3 0.0081416 32.127 1 1.5328 1.5381 NaN 1 Median 1.5328 1.5381 NaN 1 0 Median NaN NaN NaN 0 0 Median 11232000 5544900 5687500 11232000 5544900 5687500 0 0 0 11882 1575 12205 31275 48743 48743 1 SHPLPETAVR ______________________________ LRFLRSHPLPETAVRGYRRFLKLSPESAEE R S H V R G 1 1 0 0 0 0 1 0 1 0 1 0 0 0 2 1 1 0 0 1 0 0 10 0 1105.588 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 9 18 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 0.0026779 67.993 1 1.132 1.1473 NaN 1 Median 1.132 1.1473 NaN 1 0 Median NaN NaN NaN 0 0 Median 20168000 9789800 10378000 20168000 9789800 10378000 0 0 0 11883 1838 12206 31276 48744;48745 48745 2 SHSECGIIEK SVKSKNNTKQKLPVKSHSECGIIEKATSPK KLPVKSHSECGIIEKATSPKELGCDRQSEE K S H E K A 0 0 0 0 1 0 2 1 1 2 0 1 0 0 0 2 0 0 0 0 0 0 10 0 1158.5339 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6;E9PJ60 Q8TDR3 520 529 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 2 0.002026 82.75 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3286700 3286700 0 3286700 3286700 0 0 0 0 11884 1901 12207 31277 48746 48746 1 SHSIFSIR NQSFASTHLNQNSSRSHSIFSIRILHLQGE LNQNSSRSHSIFSIRILHLQGEGDIVPKIS R S H I R I 0 1 0 0 0 0 0 0 1 2 0 0 0 1 0 3 0 0 0 0 0 0 8 0 945.50321 O95235 O95235 380 387 KIF20A Kinesin-like protein KIF20A yes yes 2 0.0027401 98.997 1 2 1.0369 0.90452 14.143 3 Median 0.68937 0.79816 NaN 1 0 Median 1.1458 0.97847 11.114 2 0 Median 116830000 58616000 58214000 67301000 35888000 31412000 49529000 22727000 26801000 11885 1421 12208 31278;31279;31280 48747;48748;48749;48750;48751 48747 5 SHSLFLTQK VNHLDNDKSIEYTVKSHSLFLTQKDKEIIP IEYTVKSHSLFLTQKDKEIIPGNLEDPSEF K S H Q K D 0 0 0 0 0 1 0 0 1 0 2 1 0 1 0 2 1 0 0 0 0 0 9 0 1059.5713 Q562F6;B7Z7S9 Q562F6 741 749 SGOL2 Shugoshin-like 2 yes no 2 0.0014031 85.862 1 1 1.3286 1.2149 19.369 2 Median 1.005 1.0594 NaN 1 0 Median 1.7564 1.3932 NaN 1 0 Median 24453000 12264000 12188000 19891000 10670000 9220700 4561800 1594000 2967800 11886 1795 12209 31281;31282 48752;48753 48752 2 SHSPSASQSGSQLR TSTTGVATTQSPTPRSHSPSASQSGSQLRN RSHSPSASQSGSQLRNRSVSGKRICSYCNN R S H L R N 1 1 0 0 0 2 0 1 1 0 1 0 0 0 1 6 0 0 0 0 0 0 14 0 1427.6753 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2 A0A1P7ZIM8 1205 1218 LMO7 LIM domain only protein 7 yes no 2 0.047816 40.715 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11887 640 12210 31283 48754 48754 1 SHSTEPGLVLTLGQGDVGQLGLGENVMER ADAIPKSKKVKVSHRSHSTEPGLVLTLGQG GDVGQLGLGENVMERKKPALVSIPEDVVQA R S H E R K 0 1 1 1 0 2 3 6 1 0 5 0 1 0 1 2 2 0 0 3 0 0 29 0 2992.4924 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 29 57 RCC1 Regulator of chromosome condensation yes no 3 1.9164E-11 60.382 3 1.1616 0.99845 39.626 3 Median NaN NaN NaN 0 0 Median 1.1616 0.99845 39.626 3 0 Median 43818000 23418000 20400000 0 0 0 43818000 23418000 20400000 11888 550 12211;12212 31284;31285;31286 48755;48756;48757;48758;48759 48758 404 5 SHSVFNIK KRRIANTHLNRESSRSHSVFNIKLVQAPLD LNRESSRSHSVFNIKLVQAPLDADGDNVLQ R S H I K L 0 0 1 0 0 0 0 0 1 1 0 1 0 1 0 2 0 0 0 1 0 0 8 0 930.49232 H7BYN4;Q02241;H0YME6;H0YKQ5 H7BYN4 301 308 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.024982 62.338 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4493200 0 4493200 4493200 0 4493200 0 0 0 11889 1312 12213 31287 48760 48760 1 SHTILLVQPTK ______________________________ ______________________________ M S H T K R 0 0 0 0 0 1 0 0 1 1 2 1 0 0 1 1 2 0 0 1 0 0 11 0 1235.7238 A0A024R6D4;P84090;G3V279 A0A024R6D4 2 12 ERH Enhancer of rudimentary homolog yes no 2 2.5274E-131 269.59 2 2 0.83028 0.81644 39.747 4 Median 0.97385 1.1438 5.1259 2 0 Median 0.70569 0.57743 6.4305 2 0 Median 715840000 356760000 359080000 657460000 323380000 334080000 58386000 33387000 24999000 11890 201 12214 31288;31289;31290;31291 48761;48762;48763;48764;48765;48766;48767;48768 48764 8 SHTVAGGGSGDHSHQVR ______________________________ TVAGGGSGDHSHQVRVKAYYRGDIMITHFE M S H V R V 1 1 0 1 0 1 0 4 3 0 0 0 0 0 0 3 1 0 0 2 0 0 17 0 1687.7775 B5BUK7;B2RCZ4 B5BUK7 2 18 PRKCI Protein kinase C yes no 3 1.8285E-05 71.08 1 1.2761 1.4122 NaN 1 Median 1.2761 1.4122 NaN 1 0 Median NaN NaN NaN 0 0 Median 1550700 704320 846380 1550700 704320 846380 0 0 0 11891 884 12215 31292 48769 48769 1 SHTVVIGFGPSELQELGK MIICSEEEQNMDLTKSHTVVIGFGPSELQE VVIGFGPSELQELGKTNLEHTTGQLTTMNR K S H G K T 0 0 0 0 0 1 2 3 1 1 2 1 0 1 1 2 1 0 0 2 0 0 18 0 1896.9945 Q8NG31;E9PPJ1 Q8NG31 793 810 CASC5 Protein CASC5 yes no 3 2.861E-08 75.548 2 1 0.8526 0.89846 10.807 2 Median 0.8526 0.89846 10.807 2 0 Median NaN NaN NaN 0 0 Median 39519000 21875000 17643000 35123000 17480000 17643000 4395800 4395800 0 11892 1928 12216 31293;31294;31295 48770;48771;48772;48773;48774;48775 48773 6 SHVYSLEGQDCK SPWPPAVTDASFKVKSHVYSLEGQDCKYTP KVKSHVYSLEGQDCKYTPMFGPEARTLVLR K S H C K Y 0 0 0 1 1 1 1 1 1 0 1 1 0 0 0 2 0 0 1 1 0 0 12 0 1421.6245 H7BXF4;B1PBA3;Q9NXE4;H7C2J2;H7C0W5;B4E0T5;H7C1Q6 H7BXF4 540 551 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 2 0.050843 41.704 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1445100 1445100 0 1445100 1445100 0 0 0 0 11893 822 12217 31296 48776 48776 1 SIAEGIGPEER VSSLLQRAHEQCFLKSIAEGIGPEERRQTL CFLKSIAEGIGPEERRQTLLQKMSSF____ K S I E R R 1 1 0 0 0 0 3 2 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1156.5724 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678 Q9HBB9 1026 1036 GEMIN4 Gem-associated protein 4 yes no 2 0.0020167 78.655 1 1 1.2069 1.0547 NaN 1 Median NaN NaN NaN 0 0 Median 1.2069 1.0547 NaN 1 0 Median 16811000 16039000 772480 15401000 15401000 0 1410000 637490 772480 11894 1940 12218 31297;31298 48777;48778 48777 2 SIAFHSAVSLDPIK EYIPEGEILVITYGRSIAFHSAVSLDPIKS RSIAFHSAVSLDPIKSFEAPATINSASLHP R S I I K S 2 0 0 1 0 0 0 0 1 2 1 1 0 1 1 3 0 0 0 1 0 0 14 0 1483.8035 Q9Y3F4;B0AZV0 Q9Y3F4 205 218 STRAP Serine-threonine kinase receptor-associated protein yes no 2;3 0.00036288 73.022 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14863000 0 14863000 12934000 0 12934000 1929400 0 1929400 11895 2136 12219 31299;31300;31301 48779;48780;48781 48780 3 SIAFPSIGSGR TVKNCLALADDKKLKSIAFPSIGSGRNGFP KKLKSIAFPSIGSGRNGFPKQTAAQLILKA K S I G R N 1 1 0 0 0 0 0 2 0 2 0 0 0 1 1 3 0 0 0 0 0 0 11 0 1090.5771 O75367;Q59FH0;B4DJC3 O75367 308 318 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.00034533 85.764 2 2 1.1022 1.1238 13.512 4 Median 1.0597 1.2615 0.055756 2 0 Median 1.1451 0.9983 0.45142 2 0 Median 5736000000 2774400000 2961600000 5195400000 2521500000 2674000000 540540000 252890000 287660000 11896 1401 12220 31302;31303;31304;31305 48782;48783;48784;48785;48786;48787;48788;48789;48790;48791;48792;48793;48794;48795;48796;48797;48798;48799;48800;48801 48789 20 SIAGIDQWLEVFCEQEEK RGKKMCSDGEKAEKRSIAGIDQWLEVFCEQ GIDQWLEVFCEQEEKWVCVDCVHGVVGQPL R S I E K W 1 0 0 1 1 2 4 1 0 2 1 1 0 1 0 1 0 1 0 1 0 0 18 0 2180.0096 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPK7;D2CPK0;D2CPJ1;D2CPJ3;D2CPJ4;D2CPJ5;D2CPJ9;D2CPK5;D2CPI8 A0A024R2M8 524 541 XPC DNA repair protein complementing XP-C cells no no 2 0.0039847 66.989 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4950700 4950700 0 4950700 4950700 0 0 0 0 11897 118;1184 12221 31306 48802 48802 1 SIASAYFSPLTGNR SRRSQPLISLTEHTKSIASAYFSPLTGNRV KSIASAYFSPLTGNRVVTTCADCNLRIFDS K S I N R V 2 1 1 0 0 0 0 1 0 1 1 0 0 1 1 3 1 0 1 0 0 0 14 0 1482.7467 A0A0C4DFX7;Q9H967 A0A0C4DFX7 433 446 WDR76 WD repeat-containing protein 76 yes no 2 0.0012387 78.692 3 2 0.7765 0.73793 20.415 4 Median 0.57261 0.60023 18.078 2 0 Median 0.97083 0.81255 2.4915 2 0 Median 65375000 36232000 29143000 47925000 27648000 20277000 17450000 8583800 8866400 11898 508 12222 31307;31308;31309;31310;31311 48803;48804;48805;48806;48807 48805 3 SIATLAITTLLK ACNLDLENLVTDSNRSIATLAITTLLKTGS SNRSIATLAITTLLKTGSESSIDRLMKQIS R S I L K T 2 0 0 0 0 0 0 0 0 2 3 1 0 0 0 1 3 0 0 0 0 0 12 0 1243.7751 Q9Y678;B3KW21;Q8WUI6;Q9NUP3;B3KND4;Q9H9B7;A0A140VK12;Q9UBF2 Q9Y678 339 350 COPG1;COPG;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma;Coatomer subunit gamma-2 yes no 2 3.5535E-06 111.06 2 2.1605 2.245 6.0536 2 Median 2.1605 2.245 6.0536 2 0 Median NaN NaN NaN 0 0 Median 32208000 9858000 22350000 32208000 9858000 22350000 0 0 0 11899 2151 12223 31312;31313 48808;48809;48810;48811 48811 4 SIATSPLGLGK SAGYPPPGSRPLRGKSIATSPLGLGKSPTE LRGKSIATSPLGLGKSPTEPKPEAGGCGTP K S I G K S 1 0 0 0 0 0 0 2 0 1 2 1 0 0 1 2 1 0 0 0 0 0 11 0 1042.6023 A0A0U1RQK4 A0A0U1RQK4 1873 1883 yes yes 2 0.0051516 56.729 1 0.91307 1.0149 NaN 1 Median 0.91307 1.0149 NaN 1 0 Median NaN NaN NaN 0 0 Median 50559000 29338000 21221000 50559000 29338000 21221000 0 0 0 11900 589 12224 31314 48812;48813 48812 2 SIAVAEAACPGITDK ENNASRNQAIEELEKSIAVAEAACPGITDK SIAVAEAACPGITDKMVKKLIEKFQKCSAD K S I D K M 4 0 0 1 1 0 1 1 0 2 0 1 0 0 1 1 1 0 0 1 0 0 15 0 1501.7446 Q8NBY1;B4E0Y9;Q9P289;Q9NWX4;Q499L9;Q96SR7 Q8NBY1 360 374 STK26;MST4 Serine/threonine-protein kinase 26 yes no 2 2.3128E-38 165.35 2 2 1.8825 1.9522 5.2996 2 Median 1.8825 1.9522 5.2996 2 0 Median NaN NaN NaN 0 0 Median 50596000 16659000 33937000 48113000 16659000 31455000 2482300 0 2482300 11901 1065 12225 31315;31316;31317;31318 48814;48815;48816;48817;48818 48815 4 SICEVLDLER KKEEMLKKFRNAMLKSICEVLDLERSGVNS NAMLKSICEVLDLERSGVNSELVKRILNFL K S I E R S 0 1 0 1 1 0 2 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1232.6071 B4DNW3;P35659;B4DFG0;D6RDA2;H0Y8X0 P35659 159 168 DEK Protein DEK no no 2 3.8441E-22 163.32 3 2 0.66496 0.67514 3.3307 4 Median 0.57391 0.67309 1.7289 2 0 Median 0.7961 0.69188 4.7658 2 0 Median 900680000 543080000 357610000 691260000 426930000 264330000 209420000 116140000 93281000 11902 1546;1018 12226 31319;31320;31321;31322;31323 48819;48820;48821;48822;48823;48824;48825;48826;48827;48828;48829;48830 48823 12 SIDAGPVDAWTLAFSPDSQYLATGTHVGK AHIRLWDLENGKQIKSIDAGPVDAWTLAFS SPDSQYLATGTHVGKVNIFGVESGKKEYSL K S I G K V 4 0 0 3 0 1 0 3 1 1 2 1 0 1 2 3 3 1 1 2 0 0 29 0 3003.4614 H0YN81;Q9GZS3;H0YMF9 H0YN81 101 129 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 3 3.9425E-07 44.264 2 1 1.2863 1.3917 25.886 3 Plateau 1.3102 1.3492 4.3853 2 0 Median 1.0891 0.86449 NaN 1 0 Median 62549000 26409000 36140000 43566000 17654000 25912000 18983000 8755100 10228000 11903 1299 12227 31324;31325;31326 48831;48832;48833;48834 48834 4 SIDGTADDEDEGVPTDQAIR IDTESISALIKQVNKSIDGTADDEDEGVPT ADDEDEGVPTDQAIRAGLELLKVLSFTHPI K S I I R A 2 1 0 5 0 1 2 2 0 2 0 0 0 0 1 1 2 0 0 1 0 0 20 0 2102.924 Q9NTI5;B7Z5S1 Q9NTI5 628 647 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2 9.0063E-05 44.511 2 0.71519 0.72796 6.2826 2 Median 0.71519 0.72796 6.2826 2 0 Median NaN NaN NaN 0 0 Median 25205000 16447000 8758200 25205000 16447000 8758200 0 0 0 11904 2069 12228 31327;31328 48835;48836;48837;48838;48839;48840;48841 48837 7 SIDISATIPK FSTDSPRLLASPSSRSIDISATIPKFTNTQ SPSSRSIDISATIPKFTNTQITEHYSTCIK R S I P K F 1 0 0 1 0 0 0 0 0 3 0 1 0 0 1 2 1 0 0 0 0 0 10 0 1043.5863 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470;C9JZP1 A8K4T8 92 101 NCAPH Condensin complex subunit 2 yes no 1;2 0.0015298 73.233 3 2 0.87111 0.93831 22.723 5 Median 0.80572 0.92312 1.1334 3 0 Median 1.699 1.402 1.7374 2 0 Median 531070000 275940000 255130000 458130000 249290000 208830000 72947000 26652000 46296000 11905 740 12229 31329;31330;31331;31332;31333 48842;48843;48844;48845;48846;48847;48848;48849;48850;48851 48845 9 SIDPALSMLIK IKKKESEIEKESQRKSIDPALSMLIKSIKT SQRKSIDPALSMLIKSIKTKTEQFQARKKQ K S I I K S 1 0 0 1 0 0 0 0 0 2 2 1 1 0 1 2 0 0 0 0 0 0 11 0 1186.6631 Q9H501 Q9H501 823 833 ESF1 ESF1 homolog yes yes 2 0.011454 51.268 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11906 2033 12230 31334 48852 48852 1870 1 SIDPGLKEDTLEFLIK LQHFDTIYSILHHFRSIDPGLKEDTLEFLI IDPGLKEDTLEFLIKVVSRHSQELPAILDD R S I I K V 0 0 0 2 0 0 2 1 0 2 3 2 0 1 1 1 1 0 0 0 0 0 16 1 1816.9822 B3KMS0;A0PJ76 B3KMS0 72 87 NCAPD2 Condensin complex subunit 1 yes no 3 0.027949 17.078 1 1.7611 1.5192 NaN 1 Median NaN NaN NaN 0 0 Median 1.7611 1.5192 NaN 1 0 Median 5261600 2065300 3196300 0 0 0 5261600 2065300 3196300 11907 908 12231 31335 48853 48853 1 SIDSFGQVSHPK GRVARFTCDVETLKKSIDSFGQVSHPKNSY LKKSIDSFGQVSHPKNSYSTRSRCSSVTSV K S I P K N 0 0 0 1 0 1 0 1 1 1 0 1 0 1 1 3 0 0 0 1 0 0 12 0 1300.6412 A0A024R101;Q86XZ4 A0A024R101 364 375 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 2 0.00022516 83.862 2 1 0.94472 0.8755 1.0958 2 Median 0.86167 0.88232 NaN 1 0 Median 1.0358 0.86875 NaN 1 0 Median 18314000 6628100 11686000 16132000 5665500 10466000 2182500 962640 1219800 11908 64 12232 31336;31337;31338 48854;48855;48856 48855 3 SIDSNPYDTDK CIGTMTIEIDFLQKKSIDSNPYDTDKMAAE LQKKSIDSNPYDTDKMAAEFIQQFNNQAFS K S I D K M 0 0 1 3 0 0 0 0 0 1 0 1 0 0 1 2 1 0 1 0 0 0 11 0 1253.5412 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;B4DGR3;I3L0L3 I3L0N3 101 111 NSF Vesicle-fusing ATPase yes no 2 0.00084361 70.1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11909 1096 12233 31339 48857 48857 1 SIEALLEAGQAR QEARAENSQLTERIRSIEALLEAGQARDAQ RIRSIEALLEAGQARDAQDVQASQAEADQQ R S I A R D 3 1 0 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1256.6725 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 959 970 RRBP1 Ribosome-binding protein 1 yes no 2 0.00020601 79.974 2 0.90821 0.90246 NaN 1 Median 0.90821 0.90246 NaN 1 0 Median NaN NaN NaN 0 0 Median 7429200 4180700 3248500 7429200 4180700 3248500 0 0 0 11910 471 12234 31340;31341 48858;48859 48859 2 SIEAVHEDIR MKDTTLNWKMVDASKSIEAVHEDIRVLSE_ VDASKSIEAVHEDIRVLSE___________ K S I I R V 1 1 0 1 0 0 2 0 1 2 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1167.5884 H7BZ20;Q6FGU2;Q53F55;P23919;H7C312 H7BZ20 179 188 DTYMK Thymidylate kinase yes no 2 5.6389E-05 98.033 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6834900 0 6834900 6834900 0 6834900 0 0 0 11911 1313 12235 31342;31343;31344 48860;48861;48862 48862 3 SIEEQLGTEIKPIPSNIDK LAINLITYDDRFNLKSIEEQLGTEIKPIPS QLGTEIKPIPSNIDKSLYVAEYHSEPVEDE K S I D K S 0 0 1 1 0 1 3 1 0 4 1 2 0 0 2 2 1 0 0 0 0 0 19 1 2110.1158 B2R858;P26196 B2R858 437 455 DDX6 Probable ATP-dependent RNA helicase DDX6 yes no 3 0.0035469 45.094 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11912 860 12236 31345 48863 48863 1 SIEGPPNLGINLPLSIK ______________________________ EGPPNLGINLPLSIKPATQNSANQNKEDTK K S I I K P 0 0 2 0 0 0 1 2 0 3 3 1 0 0 3 2 0 0 0 0 0 0 17 0 1761.0036 B4DQV3;B3KXW2;A0A024R283;Q9HCE3;K7EQN0 B4DQV3 14 30 ZNF532 Zinc finger protein 532 yes no 2 7.8497E-05 62.891 2 0.41596 0.41797 22.616 2 Median 0.41596 0.41797 22.616 2 0 Median NaN NaN NaN 0 0 Median 12332000 7854800 4477600 12332000 7854800 4477600 0 0 0 11913 108 12237 31346;31347 48864;48865;48866;48867;48868 48864 5 SIEGTADDEEEGVSPDTAIR IDSEAISALVKLMNKSIEGTADDEEEGVSP ADDEEEGVSPDTAIRSGLELLKVLSFTHPT K S I I R S 2 1 0 3 0 0 4 2 0 2 0 0 0 0 1 2 2 0 0 1 0 0 20 0 2089.9288 G1UI16;Q29RF7 G1UI16 638 657 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 5.395E-07 88.282 2 2 0.68399 0.63847 19.591 4 Median 0.7369 0.76067 3.5694 2 0 Median 0.64313 0.54304 1.7002 2 0 Median 44793000 27831000 16962000 34848000 21752000 13096000 9945200 6079300 3865900 11914 1270 12238 31348;31349;31350;31351 48869;48870;48871;48872;48873;48874;48875;48876 48873 8 SIEIPRPVDGVEVPGCGK VEDVRDECSKYGLVKSIEIPRPVDGVEVPG IPRPVDGVEVPGCGKIFVEFTSVFDCQKAM K S I G K I 0 1 0 1 1 0 2 3 0 2 0 1 0 0 3 1 0 0 0 3 0 0 18 1 1907.9775 K7ENG2;B5BU25;P26368 K7ENG2 246 263 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 3 0.0057223 30.489 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7637000 7637000 0 7637000 7637000 0 0 0 0 11915 1074 12239 31352 48877 48877 1 SIELFYK LLAHCGRPQTECRHKSIELFYKFVPLLPGN PQTECRHKSIELFYKFVPLLPGNRSPNLWL K S I Y K F 0 0 0 0 0 0 1 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 7 0 898.48002 P78527 P78527 1187 1193 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.057145 55.441 1 0.32856 0.26805 NaN 1 Median NaN NaN NaN 0 0 Median 0.32856 0.26805 NaN 1 0 Median 6070200 4634500 1435700 0 0 0 6070200 4634500 1435700 11916 1665 12240 31353 48878 48878 1 SIEVYSAYNNVK VLLAQCVVYFARAPKSIEVYSAYNNVKACL APKSIEVYSAYNNVKACLRNHQGPLPPVPL K S I V K A 1 0 2 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 2 2 0 0 12 0 1385.6827 Q96S55 Q96S55 590 601 WRNIP1 ATPase WRNIP1 yes yes 2 1.1352E-06 99.653 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11917 1987 12241 31354;31355 48879;48880 48879 2 SIFGEDALANVSIEK LSGYCGFMAANLYARSIFGEDALANVSIEK SIFGEDALANVSIEKPIHQGPDAAVTGHIR R S I E K P 2 0 1 1 0 0 2 1 0 2 1 1 0 1 0 2 0 0 0 1 0 0 15 0 1591.8094 P53618 P53618 899 913 COPB1 Coatomer subunit beta yes yes 2 1.0093E-05 92.925 1 1.4768 1.4581 NaN 1 Median 1.4768 1.4581 NaN 1 0 Median NaN NaN NaN 0 0 Median 25272000 10906000 14366000 25272000 10906000 14366000 0 0 0 11918 1606 12242 31356 48881 48881 1 SIFLFLDR NTCWQDHCRQMIMIRSIFLFLDRTYVLQNS RQMIMIRSIFLFLDRTYVLQNSTLPSIWDM R S I D R T 0 1 0 1 0 0 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1009.5597 Q13619;A0A0A0MR50;B2RBV7;A0A087WWN2 Q13619 151 158 CUL4A Cullin-4A no no 2 0.0092293 75.213 2 1 0.79626 0.7739 7.0408 3 Plateau 0.76344 0.75887 4.9435 2 0 Median 0.79906 0.68264 NaN 1 0 Median 25078000 13854000 11224000 21832000 12031000 9801100 3246400 1823100 1423300 11919 1718 12243 31357;31358;31359 48882;48883;48884;48885;48886;48887;48888 48883 7 SIFQHIQSAQSQR CRDLVHSNKKEQEFRSIFQHIQSAQSQRSP FRSIFQHIQSAQSQRSPSELFAQHIVTIVH R S I Q R S 1 1 0 0 0 4 0 0 1 2 0 0 0 1 0 3 0 0 0 0 0 0 13 0 1528.7746 Q9Y2W1 Q9Y2W1 609 621 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2;3 3.1458E-09 95.264 6 4 1.039 0.97516 9.2066 7 Median 0.99299 1.1039 7.6084 3 0 Median 1.1015 0.92128 6.074 4 0 Median 247330000 100070000 147260000 223270000 88311000 134960000 24061000 11761000 12300000 11920 2128 12244 31360;31361;31362;31363;31364;31365;31366;31367;31368;31369 48889;48890;48891;48892;48893;48894;48895;48896;48897;48898;48899;48900;48901;48902 48891 14 SIFSAVLDELK IMGTSPLQIDRAEDRSIFSAVLDELKVAQA AEDRSIFSAVLDELKVAQAPWKAVNTLNEA R S I L K V 1 0 0 1 0 0 1 0 0 1 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1220.6653 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209 Q5R210 1090 1100 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.0012874 68.657 2 1.8127 1.8322 NaN 1 Median 1.8127 1.8322 NaN 1 0 Median NaN NaN NaN 0 0 Median 13079000 3195400 9883900 13079000 3195400 9883900 0 0 0 11921 148 12245 31370;31371 48903;48904 48904 2 SIFSLDTPEQYQEAFQK GTEGPFVERVTAVWKSIFSLDTPEQYQEAF FSLDTPEQYQEAFQKLQNIKYPSATNNTPA K S I Q K L 1 0 0 1 0 3 2 0 0 1 1 1 0 2 1 2 1 0 1 0 0 0 17 0 2029.9633 B7ZLC9;Q8TEQ6 B7ZLC9 1165 1181 GEMIN5 Gem-associated protein 5 yes no 2 0.0033755 52.247 1 0.99232 1.023 NaN 1 Median 0.99232 1.023 NaN 1 0 Median NaN NaN NaN 0 0 Median 9624400 5070500 4553900 9624400 5070500 4553900 0 0 0 11922 1114 12246 31372 48905;48906 48906 2 SIFTGLMIDPR NLEASAVIQGLVKDRSIFTGLMIDPRTKAL VKDRSIFTGLMIDPRTKALVLNGKPGHLQF R S I P R T 0 1 0 1 0 0 0 1 0 2 1 0 1 1 1 1 1 0 0 0 0 0 11 0 1248.6536 A8K330;Q8IWA0 A8K330 335 345 WDR75 WD repeat-containing protein 75 yes no 2 0.00022672 76.143 2 3 1.2991 1.1716 27.275 5 Median 1.3246 1.4079 3.7105 2 0 Median 1.2042 1.044 24.753 3 0 Median 85028000 36580000 48447000 72552000 31065000 41487000 12475000 5514900 6960400 11923 716 12247;12248 31373;31374;31375;31376;31377 48907;48908;48909;48910;48911;48912;48913 48908 552 7 SIFVLPNDDLK ALPSYRKFVTKSSKKSIFVLPNDDLKKLAR SSKKSIFVLPNDDLKKLARKGGIREVPYFN K S I L K K 0 0 1 2 0 0 0 0 0 1 2 1 0 1 1 1 0 0 0 1 0 0 11 0 1259.6762 E7ETD6;Q12830;F5GXF5 E7ETD6 1706 1716 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.001099 70.1 2 2 1.5145 1.2438 27.54 3 Median 0.74964 0.78153 NaN 1 0 Median 1.5517 1.2587 1.6812 2 0 Median 20965000 7385600 13579000 16106000 5347000 10759000 4858800 2038600 2820100 11924 1224 12249 31378;31379;31380;31381 48914;48915;48916;48917;48918 48914 5 SIGEYDVLR PPDVLRWVELAKLYRSIGEYDVLRGIFTSE LAKLYRSIGEYDVLRGIFTSEIGTKQITQS R S I L R G 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1050.5346 P78527 P78527 2932 2940 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0018938 79.474 2 2 0.62096 0.61133 26.454 4 Median 0.65433 0.7413 0.8847 2 0 Median 0.57268 0.47374 9.6824 2 0 Median 165780000 102770000 63016000 133300000 80245000 53053000 32486000 22523000 9963100 11925 1665 12250 31382;31383;31384;31385 48919;48920;48921;48922;48923;48924 48920 6 SIGSAVDQGNESIVAK RQFVDGPPGPVKKTRSIGSAVDQGNESIVA IGSAVDQGNESIVAKTTVTVPNDGGPIEAV R S I A K T 2 0 1 1 0 1 1 2 0 2 0 1 0 0 0 3 0 0 0 2 0 0 16 0 1573.7948 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8W1E5 B2RE34 203 218 RACGAP1 Rac GTPase-activating protein 1 yes no 2 1.1034E-46 158.25 2 2 1.9627 1.5652 45.637 3 Median 0.72375 0.74498 NaN 1 0 Median 2.0269 1.6361 6.2631 2 0 Median 48900000 29868000 19032000 31219000 24078000 7141900 17681000 5790600 11890000 11926 68 12251 31386;31387;31388;31389 48925;48926;48927;48928;48929;48930;48931 48927 7 SIHFSSPVFTSR ______________________________ ______________________________ M S I S R S 0 1 0 0 0 0 0 0 1 1 0 0 0 2 1 4 1 0 0 1 0 0 12 0 1363.6884 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 2 13 KRT7 Keratin, type II cytoskeletal 7 no no 2 0.0003449 79.974 2 2 1.1362 1.119 23.264 4 Median 1.1971 1.3693 2.3129 2 0 Median 1.077 0.91623 2.0466 2 0 Median 404510000 189830000 214670000 353430000 164350000 189080000 51081000 25488000 25594000 + 11927 1171;1158 12252 31390;31391;31392;31393 48932;48933;48934;48935;48936;48937;48938;48939;48940 48933 9 SIIDGYITPMDFIWLK RDLLETEEIYIKEIKSIIDGYITPMDFIWL IIDGYITPMDFIWLKHLIPDVLQNNKDFLF K S I L K H 0 0 0 2 0 0 0 1 0 4 1 1 1 1 1 1 1 1 1 0 0 0 16 0 1910.9852 Q86YR7 Q86YR7 640 655 MCF2L2 Probable guanine nucleotide exchange factor MCF2L2 yes yes 2 0.00023201 49.3 2 1.7098 1.4862 NaN 1 Median NaN NaN NaN 0 0 Median 1.7098 1.4862 NaN 1 0 Median 427830000 181800000 246030000 0 0 0 427830000 181800000 246030000 11928 1889 12253 31394;31395 48941;48942 48942 1737 2 SIILEGFK ______________________________ ______________________________ K S I F K S 0 0 0 0 0 0 1 1 0 2 1 1 0 1 0 1 0 0 0 0 0 0 8 0 905.52222 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 5 12 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.026353 54.611 2 2 1.2374 1.2303 20.199 4 Median 0.86732 1.022 3.2287 2 0 Median 1.7394 1.4479 0.026885 2 0 Median 836270000 416320000 419950000 746950000 384250000 362700000 89317000 32073000 57244000 11929 69 12254 31396;31397;31398;31399 48943;48944;48945;48946;48947;48948;48949 48946 7 SIIQSAQQDSIK EFAIMQTPAGELYDKSIIQSAQQDSIKKAN YDKSIIQSAQQDSIKKANMKRENKAYSFKE K S I I K K 1 0 0 1 0 3 0 0 0 3 0 1 0 0 0 3 0 0 0 0 0 0 12 0 1316.6936 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 777 788 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0010603 82.261 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6106100 0 6106100 6106100 0 6106100 0 0 0 11930 1205 12255 31400 48950 48950 1 SIITYVSSLYDAMPR LLDPEDVDVPQPDEKSIITYVSSLYDAMPR SIITYVSSLYDAMPRVPDVQDGVRANELQL K S I P R V 1 1 0 1 0 0 0 0 0 2 1 0 1 0 1 3 1 0 2 1 0 0 15 0 1714.86 Q15149;E9PMV1 Q15149 387 401 PLEC Plectin yes no 2 0.0059085 44.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11931 1754 12256 31401 48951 48951 1617 1 SILDQLDWIVNK NSITEEVLDHMGTFRSILDQLDWIVNKFKE TFRSILDQLDWIVNKFKEDSSLELFLLIHN R S I N K F 0 0 1 2 0 1 0 0 0 2 2 1 0 0 0 1 0 1 0 1 0 0 12 0 1442.7769 B4DYU9;A0A024R411;Q13416 B4DYU9 368 379 ORC2L;ORC2 Origin recognition complex subunit 2 yes no 2 2.5204E-08 119.68 2 1.3583 1.3598 7.9625 2 Median 1.3583 1.3598 7.9625 2 0 Median NaN NaN NaN 0 0 Median 11645000 5376500 6268600 11645000 5376500 6268600 0 0 0 11932 146 12257 31402;31403 48952;48953;48954;48955 48955 4 SILEEDEEDEEPPR ECQSSEESMGSNSMRSILEEDEEDEEPPRV RSILEEDEEDEEPPRVLLYHEPRSFEVGML R S I P R V 0 1 0 2 0 0 6 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 14 0 1685.7268 J3KNX4;D6W5Y8;A0A0D9SGJ8;Q2TAK8 J3KNX4 387 400 MUM1 PWWP domain-containing protein MUM1 yes no 2 0.0033694 62.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1647900 1647900 0 1647900 1647900 0 0 0 0 11933 529 12258 31404 48956 48956 1 SILEQLAEK WHFEEAVDGECPPQRSILEQLAEKNFELVI ECPPQRSILEQLAEKNFELVINLSMRGAGG R S I E K N 1 0 0 0 0 1 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1029.5706 Q53SY7;F8VPD4;P27708;H7C3Z5 Q53SY7 1305 1313 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.028949 46.457 1 0.81389 0.82213 NaN 1 Median 0.81389 0.82213 NaN 1 0 Median NaN NaN NaN 0 0 Median 8426000 4417400 4008600 8426000 4417400 4008600 0 0 0 11934 1259 12259 31405 48957;48958 48957 2 SILGLGQARPLEFLR APRALSLLSLPPKKRSILGLGQARPLEFLR SILGLGQARPLEFLRTCYGGSFLVHESFLY R S I L R T 1 2 0 0 0 1 1 2 0 1 4 0 0 1 1 1 0 0 0 0 0 0 15 1 1668.9675 Q4VC44;I3L188 Q4VC44 261 275 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 3 0.0020863 39.005 1 2 1.2287 1.0805 11.258 2 Median NaN NaN NaN 0 0 Median 1.2287 1.0805 11.258 2 0 Median 7337900 2823700 4514200 0 0 0 7337900 2823700 4514200 11935 1781 12260 31406;31407;31408 48959;48960;48961;48962 48960 4 SILHQLTASLAVAEASLR LEQMRTKLSSLATAKSILHQLTASLAVAEA HQLTASLAVAEASLRFEHRDLHWGNVLLKK K S I L R F 4 1 0 0 0 1 1 0 1 1 4 0 0 0 0 3 1 0 0 1 0 0 18 0 1879.0527 A0PJ70;A8K9K0;Q8TF76 A0PJ70 627 644 GSG2 Serine/threonine-protein kinase haspin yes no 3 1.9713E-05 53.773 1 0.93972 0.93851 NaN 1 Median 0.93972 0.93851 NaN 1 0 Median NaN NaN NaN 0 0 Median 8052500 3875900 4176600 8052500 3875900 4176600 0 0 0 11936 646 12261 31409 48963 48963 1 SILLATDVASR SKRLGSLNKFKAKARSILLATDVASRGLDI AKARSILLATDVASRGLDIPHVDVVVNFDI R S I S R G 2 1 0 1 0 0 0 0 0 1 2 0 0 0 0 2 1 0 0 1 0 0 11 0 1144.6452 Q53GJ1;A0A024RAS3;Q9H0S4;Q7Z4B1 Q53GJ1 308 318 hCG_27698;DDX47;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2 1.4463E-05 110.53 1 2 1.2733 1.0546 6.2935 3 Median 1.0181 1.1735 NaN 1 0 Median 1.2752 1.0524 0.30766 2 0 Median 105270000 51836000 53430000 72652000 36681000 35972000 32614000 15156000 17458000 11937 313 12262 31410;31411;31412 48964;48965;48966;48967;48968;48969;48970 48965 7 SILLDMATR DGTARIWQFKRREWKSILLDMATRPAGQNL KRREWKSILLDMATRPAGQNLQGIEDKITK K S I T R P 1 1 0 1 0 0 0 0 0 1 2 0 1 0 0 1 1 0 0 0 0 0 9 0 1018.5481 Q9NSI6;Q5R2U6;H0Y463;Q5R2U9;H0Y500;Q5R2U8;H0Y5I9;Q5R2U5;H0Y4A7;Q5R2U4;H0Y4R9;Q8WWQ0 Q8WWQ0 401 409 BRWD1;WDR9;PHIP Bromodomain and WD repeat-containing protein 1;PH-interacting protein no no 2 0.013865 48.794 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12439000 0 12439000 12439000 0 12439000 0 0 0 11938 1942;2068 12263 31413 48971 48971 1783;1896 1 SILLDMATRPAGQNLQGIEDK DGTARIWQFKRREWKSILLDMATRPAGQNL ATRPAGQNLQGIEDKITKMKVTMVAWDRHD K S I D K I 2 1 1 2 0 2 1 2 0 2 3 1 1 0 1 1 1 0 0 0 0 0 21 1 2269.1736 Q8WWQ0 Q8WWQ0 401 421 PHIP PH-interacting protein yes yes 3 4.6058E-09 79.635 2 5 1.7066 1.6796 33.099 7 Median 1.4785 1.7543 6.1539 2 0 Median 1.7892 1.5006 38.739 5 0 Median 180740000 67260000 113480000 122790000 47967000 74822000 57955000 19293000 38662000 11939 1942 12264;12265 31414;31415;31416;31417;31418;31419;31420 48972;48973;48974;48975;48976;48977;48978;48979;48980;48981;48982;48983;48984;48985;48986;48987 48977 1783 16 SILLSVPLLVVDNK LTTVGKFEEAVEKFRSILLSVPLLVVDNKQ RSILLSVPLLVVDNKQEIAEAQQLITICRE R S I N K Q 0 0 1 1 0 0 0 0 0 1 4 1 0 0 1 2 0 0 0 3 0 0 14 0 1508.9178 P53621 P53621 1031 1044 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 7.4152E-05 89.403 2 1.4233 1.4411 3.9772 2 Median 1.4233 1.4411 3.9772 2 0 Median NaN NaN NaN 0 0 Median 44087000 18407000 25680000 44087000 18407000 25680000 0 0 0 11940 1607 12266 31421;31422 48988;48989;48990;48991;48992 48991 5 SILSPGGSCGPIK KKHVGGRVMVTDADRSILSPGGSCGPIKVK DRSILSPGGSCGPIKVKTEPTEDSGISLEM R S I I K V 0 0 0 0 1 0 0 3 0 2 1 1 0 0 2 3 0 0 0 0 0 0 13 0 1271.6544 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9 X5D2J9 207 219 GTF2I General transcription factor II-I yes no 2 0.0044447 60.434 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11941 789 12267 31423 48993 48993 1 SILTIPWVELGGK HGEEYVFTLPSAYARSILTIPWVELGGKVS ARSILTIPWVELGGKVSINCAKTGYSATVI R S I G K V 0 0 0 0 0 0 1 2 0 2 2 1 0 0 1 1 1 1 0 1 0 0 13 0 1411.8075 Q59ED9;H7C487;Q9NX98;B3KUL5;Q9BXB5 Q59ED9 366 378 OSBPL10 Oxysterol-binding protein;Oxysterol-binding protein-related protein 10 yes no 2 0.0022097 70.977 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3860900 0 3860900 3860900 0 3860900 0 0 0 11942 947 12268 31424;31425 48994;48995 48994 2 SILTQIDHILMDK LASGKLGKGFGAFERSILTQIDHILMDKER ERSILTQIDHILMDKERLLRRTQTKRSVYR R S I D K E 0 0 0 2 0 1 0 0 1 3 2 1 1 0 0 1 1 0 0 0 0 0 13 0 1525.8174 Q9NY61;A0A087WWS8 Q9NY61 391 403 AATF Protein AATF yes no 2;3 2.6589E-09 114.24 5 2 1.1749 1.0813 6.3861 4 Median 1.0549 1.1413 7.2902 2 0 Median 1.338 1.0561 2.993 2 0 Median 142620000 66632000 75989000 110490000 52053000 58435000 32132000 14579000 17553000 11943 2080 12269 31426;31427;31428;31429;31430;31431;31432 48996;48997;48998;48999;49000;49001;49002;49003;49004;49005 48998 1915 10 SILVPNEELSMVMSSK AKSENVDVGKPALGKSILVPNEELSMVMSS ILVPNEELSMVMSSKKKLTKKTESQSQKRS K S I S K K 0 0 1 0 0 0 2 0 0 1 2 1 2 0 1 4 0 0 0 2 0 0 16 0 1762.8845 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 2030 2045 AHCTF1 Protein ELYS yes no 2 0.00018509 71.548 2 2.7175 2.9254 NaN 1 Median 2.7175 2.9254 NaN 1 0 Median NaN NaN NaN 0 0 Median 21628000 5073000 16555000 21628000 5073000 16555000 0 0 0 11944 1945 12270 31433;31434 49006;49007 49006 1790;1791 2 SILVSPTGPSR GLNRNMTAEFKKTDKSILVSPTGPSRVAFD KTDKSILVSPTGPSRVAFDPEQKPLHGVLK K S I S R V 0 1 0 0 0 0 0 1 0 1 1 0 0 0 2 3 1 0 0 1 0 0 11 0 1112.619 Q14684 Q14684 702 712 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.00042951 79.16 2 1.0756 1.1337 3.5897 2 Median 1.0756 1.1337 3.5897 2 0 Median NaN NaN NaN 0 0 Median 61501000 31770000 29731000 61501000 31770000 29731000 0 0 0 11945 1740 12271 31435;31436 49008;49009;49010;49011;49012 49011 5 SIMTIVGHTDVVK GSYDKTSRIWSLEGKSIMTIVGHTDVVKDV GKSIMTIVGHTDVVKDVAWVKKDSLSCLLL K S I V K D 0 0 0 1 0 0 0 1 1 2 0 1 1 0 0 1 2 0 0 3 0 0 13 0 1398.7541 Q53T99;Q9GZL7 Q53T99 132 144 WDR12 Ribosome biogenesis protein WDR12 yes no 2 6.3187E-05 90.05 2 1 1.4657 1.4685 15.201 3 Plateau 1.4361 1.4685 13.46 2 0 Median 1.4657 1.196 NaN 1 0 Median 41104000 16389000 24715000 34897000 13770000 21127000 6206800 2619300 3587400 11946 1792 12272;12273 31437;31438;31439 49013;49014;49015 49014 1658 3 SINNNTAICVEGK LKKNQVVQLQEWMIKSINNNTAICVEGKLI IKSINNNTAICVEGKLIDVTNIYWHSNVII K S I G K L 1 0 3 0 1 0 1 1 0 2 0 1 0 0 0 1 1 0 0 1 0 0 13 0 1418.6824 Q6P0N0;G5E9K5;H7C1S6 Q6P0N0 392 404 MIS18BP1 Mis18-binding protein 1 yes no 2 0.0019329 72.652 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5807100 5807100 0 5807100 5807100 0 0 0 0 11947 1849 12274 31440 49016 49016 1 SINPDEAVAYGAAVQAAILMGDK QKLLQDFFNGRDLNKSINPDEAVAYGAAVQ AYGAAVQAAILMGDKSENVQDLLLLDVAPL K S I D K S 6 0 1 2 0 1 1 2 0 2 1 1 1 0 1 1 0 0 1 2 0 0 23 0 2303.1467 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNX1;B4E1T6 A8K5I0 362 384 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2 3.6306E-23 121.82 2 0.99756 1.0953 1.9559 2 Median 0.99756 1.0953 1.9559 2 0 Median NaN NaN NaN 0 0 Median 95559000 48489000 47070000 95559000 48489000 47070000 0 0 0 11948 533 12275 31441;31442 49017;49018;49019 49019 395 3 SINPDEAVAYGAAVQAAILSGDK QKLLQDFFNGKELNKSINPDEAVAYGAAVQ AYGAAVQAAILSGDKSENVQDLLLLDVTPL K S I D K S 6 0 1 2 0 1 1 2 0 2 1 1 0 0 1 2 0 0 1 2 0 0 23 0 2259.1383 V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2 V9HW22 362 384 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 2.364E-22 114.28 2 2 1.3711 1.5821 39.515 3 Plateau 1.3654 1.5581 2.1561 2 0 Median 0.925 0.78629 NaN 1 0 Median 437900000 204800000 233110000 323810000 135890000 187930000 114090000 68910000 45180000 11949 1467 12276 31443;31444;31445;31446 49020;49021;49022;49023 49021 4 SINPLGGFVHYGEVTNDFVMLK LIKNNASTDYDLSDKSINPLGGFVHYGEVT FVHYGEVTNDFVMLKGCVVGTKKRVLTLRK K S I L K G 0 0 2 1 0 0 1 3 1 1 2 1 1 2 1 1 1 0 1 3 0 0 22 0 2436.2148 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;B3KS36 P39023 313 334 RPL3;rpl3 60S ribosomal protein L3 no no 3 7.6337E-13 99.366 7 4 0.71089 0.70905 49.276 10 Median 0.68772 0.70905 59.91 6 0 Median 0.87198 0.74652 29.657 4 0 Median 936420000 414940000 521490000 500350000 181120000 319230000 436070000 233810000 202260000 11950 1554;936 12277;12278 31447;31448;31449;31450;31451;31452;31453;31454;31455;31456;31457 49024;49025;49026;49027;49028;49029;49030;49031;49032;49033;49034;49035;49036;49037;49038;49039;49040;49041;49042;49043;49044;49045 49042 765 22 SINQQSGAHVELQR DKCGLVIGKGGENIKSINQQSGAHVELQRN KSINQQSGAHVELQRNPPPNSDPNLRRFTI K S I Q R N 1 1 1 0 0 3 1 1 1 1 1 0 0 0 0 2 0 0 0 1 0 0 14 0 1565.791 A0A024R8A7;Q96I24 A0A024R8A7 379 392 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 2;3 1.2168E-46 181.98 3 1 1.7558 1.8347 35.636 4 Median 1.8098 1.869 8.3694 3 0 Median 1.1438 0.95553 NaN 1 0 Median 71927000 23760000 48167000 68600000 22311000 46289000 3326800 1449300 1877400 11951 245 12279 31458;31459;31460;31461 49046;49047;49048;49049;49050;49051 49048 6 SIPALVR TLGKLCLQHEDLAKKSIPALVRELEVCEDV QHEDLAKKSIPALVRELEVCEDVAVRNNVI K S I V R E 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 7 0 754.47012 P42695;G3V1A9;Q96FA6 P42695 941 947 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.028795 71.359 2 0.89592 0.93568 8.8834 2 Median 0.89592 0.93568 8.8834 2 0 Median NaN NaN NaN 0 0 Median 49715000 23780000 25935000 49715000 23780000 25935000 0 0 0 11952 1565 12280 31462;31463 49052;49053 49053 2 SIPLDEGEDEAQR LSTDMIFNNFLARLRSIPLDEGEDEAQRRR LRSIPLDEGEDEAQRRRKGKEDEGEEAASP R S I Q R R 1 1 0 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 13 0 1457.6634 Q14204 Q14204 2384 2396 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0029073 67.153 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9039800 0 9039800 9039800 0 9039800 0 0 0 11953 1729 12281 31464 49054;49055 49054 2 SIPSDPEER KLVISHEEELIPLHKSIPSDPEERKQYTIP LIPLHKSIPSDPEERKQYTIPCHTKAAHFD K S I E R K 0 1 0 1 0 0 2 0 0 1 0 0 0 0 2 2 0 0 0 0 0 0 9 0 1028.4775 O14646 O14646 1227 1235 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.012314 57.59 2 0.77153 0.82264 8.1714 2 Median 0.77153 0.82264 8.1714 2 0 Median NaN NaN NaN 0 0 Median 55161000 32042000 23119000 55161000 32042000 23119000 0 0 0 11954 1366 12282 31465;31466 49056;49057;49058;49059 49057 4 SIPSLVDGFKPGQR INKELILFSNSDNERSIPSLVDGFKPGQRK RSIPSLVDGFKPGQRKVLFTCFKRNDKREV R S I Q R K 0 1 0 1 0 1 0 2 0 1 1 1 0 1 2 2 0 0 0 1 0 0 14 1 1499.8096 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 707 720 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 4.2247E-06 96.015 4 2 0.58721 0.69145 14.911 6 Median 0.56204 0.66 8.3854 4 0 Median 0.98408 0.83897 0.41809 2 0 Median 220730000 132530000 88201000 199770000 122700000 77072000 20967000 9837500 11129000 11955 1679 12283 31467;31468;31469;31470;31471;31472 49060;49061;49062;49063;49064;49065;49066;49067;49068;49069;49070 49062 11 SIPSMVDGLK INKELILFSNSDNERSIPSMVDGLKPGQRK SDNERSIPSMVDGLKPGQRKVLFTCFKRND R S I L K P 0 0 0 1 0 0 0 1 0 1 1 1 1 0 1 2 0 0 0 1 0 0 10 0 1045.5478 P11388 P11388 714 723 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0040223 56.258 4 0.97421 1.1299 1.032 4 Median 0.97421 1.1299 1.032 4 0 Median NaN NaN NaN 0 0 Median 865100000 443400000 421700000 865100000 443400000 421700000 0 0 0 11956 1471 12284 31473;31474;31475;31476 49071;49072;49073;49074;49075;49076 49071 1211 6 SIPSMVDGLKPGQR INKELILFSNSDNERSIPSMVDGLKPGQRK RSIPSMVDGLKPGQRKVLFTCFKRNDKREV R S I Q R K 0 1 0 1 0 1 0 2 0 1 1 1 1 0 2 2 0 0 0 1 0 0 14 1 1483.7817 P11388 P11388 714 727 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.9181E-06 102.52 8 5 1.1096 1.2476 21.097 13 Median 0.95714 1.1343 21.853 8 0 Median 1.4846 1.2576 20.227 5 0 Median 2113300000 1078600000 1034700000 2030800000 1043600000 987240000 82503000 35030000 47473000 11957 1471 12285;12286 31477;31478;31479;31480;31481;31482;31483;31484;31485;31486;31487;31488;31489 49077;49078;49079;49080;49081;49082;49083;49084;49085;49086;49087;49088;49089;49090;49091;49092;49093;49094;49095;49096;49097;49098;49099;49100 49082 1211 24 SIPTLISR AEYGRLGLGEGAEEKSIPTLISRLPAVSSV GEGAEEKSIPTLISRLPAVSSVACGASVGY K S I S R L 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 2 1 0 0 0 0 0 8 0 885.52837 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69 Q5T081 336 343 RCC1 Regulator of chromosome condensation yes no 2 0.02313 56.721 2 0.78705 0.89048 1.3905 2 Median 0.78705 0.89048 1.3905 2 0 Median NaN NaN NaN 0 0 Median 127130000 69584000 57546000 127130000 69584000 57546000 0 0 0 11958 550 12287 31490;31491 49101;49102 49101 2 SIPYDQSPGPK GVTFAAMVGAGMLVRSIPYDQSPGPKHLAW MLVRSIPYDQSPGPKHLAWLLHSGVMGAVV R S I P K H 0 0 0 1 0 1 0 1 0 1 0 1 0 0 3 2 0 0 1 0 0 0 11 0 1187.5823 B4DSV8;B4DPG9;Q9H3K2;B4DNL0;Q9Y6G2;Q6FIA7 B4DSV8 166 176 GHITM Growth hormone-inducible transmembrane protein yes no 2 0.0023522 61.78 2 1.9014 2.0356 52.146 2 Median 1.9014 2.0356 52.146 2 0 Median NaN NaN NaN 0 0 Median 38303000 12883000 25420000 38303000 12883000 25420000 0 0 0 11959 1021 12288 31492;31493 49103;49104 49104 2 SIQEELQQLR VRREEAAVDAQQQKRSIQEELQQLRQSSEA QQQKRSIQEELQQLRQSSEAEIQAKARQAE R S I L R Q 0 1 0 0 0 3 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1242.6568 Q15149 Q15149 1554 1563 PLEC Plectin yes yes 2 0.010494 62.823 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5371900 4548900 823030 4548900 4548900 0 823030 0 823030 11960 1754 12289 31494;31495 49105;49106 49105 2 SIQEIQELDK EEDEHSVNYKPPAQKSIQEIQELDKDDESL PPAQKSIQEIQELDKDDESLRKYKEALLGR K S I D K D 0 0 0 1 0 2 2 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1201.619 J3KS60;J3KRE2;J3QW41;A0A0S2Z3D9;J3KTF8;V9HWE8;J3QQX2;J3KRY1;P52565 J3KS60 34 43 ARHGDIA;HEL-S-47e Rho GDP-dissociation inhibitor 1 yes no 2 0.0036289 65.933 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11961 546 12290 31496 49107 49107 1 SIQFALR MVVKMLIEKDPSLEKSIQFALRQNLHEIGE EKDPSLEKSIQFALRQNLHEIGERCVEELK K S I L R Q 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 833.47594 F8W0Q9;F8WF16;B7Z615;B7Z8L1;F8W6A0;B7Z8M9;B7Z695;Q8NEY8 F8W0Q9 347 353 PPHLN1 Periphilin-1 yes no 2 0.014977 99.511 1 1.1152 1.1038 NaN 1 Median 1.1152 1.1038 NaN 1 0 Median NaN NaN NaN 0 0 Median 15423000 7826400 7596100 15423000 7826400 7596100 0 0 0 11962 1264 12291 31497 49108;49109 49109 2 SIQFVDWCPTGFK PKDVNAAIATIKTKRSIQFVDWCPTGFKVG KRSIQFVDWCPTGFKVGINYQPPTVVPGGD R S I F K V 0 0 0 1 1 1 0 1 0 1 0 1 0 2 1 1 1 1 0 1 0 0 13 0 1583.7442 B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;P68366 B3KT06 305 317 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain no no 2 8.7208E-10 124.42 2 2 1.3234 1.296 31.398 4 Median 1.4705 1.7022 0.63977 2 0 Median 1.1905 0.9882 0.43489 2 0 Median 524200000 219090000 305100000 442110000 180710000 261400000 82090000 38386000 43704000 11963 922;1659 12292 31498;31499;31500;31501 49110;49111;49112;49113;49114;49115;49116;49117 49113 8 SIQLDGLVWGASK WDDETDMAQLEACVRSIQLDGLVWGASKLV VRSIQLDGLVWGASKLVPVGYGIRKLQIQC R S I S K L 1 0 0 1 0 1 0 2 0 1 2 1 0 0 0 2 0 1 0 1 0 0 13 0 1372.7351 D3DWK1;B2RAR6;E9PRY8;P29692;E9PK01;Q9BW34;A0A087X1X7;Q71RH4;Q9H7G6;E9PQZ1;H0YE72;H0YE58;E9PQC9 D3DWK1 586 598 EEF1D Elongation factor 1-delta yes no 2 0.00013575 90.685 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8031700 0 8031700 8031700 0 8031700 0 0 0 11964 875 12293 31502;31503 49118;49119 49118 2 SIQSGPLK MVLGPAAYNVPLPKKSIQSGPLKISSVSEV NVPLPKKSIQSGPLKISSVSEVMKESKQPA K S I L K I 0 0 0 0 0 1 0 1 0 1 1 1 0 0 1 2 0 0 0 0 0 0 8 0 828.47052 B4DS66;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20;Q05DN3 Q16891 103 110 IMMT MICOS complex subunit MIC60 no no 2 0.0092293 75.213 2 0.98574 1.0886 12.052 2 Median 0.98574 1.0886 12.052 2 0 Median NaN NaN NaN 0 0 Median 103500000 49847000 53650000 103500000 49847000 53650000 0 0 0 11965 1774;1029;1128 12294 31504;31505 49120;49121;49122 49120 3 SIRPDNMSEYSK EMTKYHSDDYIKFLRSIRPDNMSEYSKQMQ FLRSIRPDNMSEYSKQMQRFNVGEDCPVFD R S I S K Q 0 1 1 1 0 0 1 0 0 1 0 1 1 0 1 3 0 0 1 0 0 0 12 1 1425.6558 Q6IT96;Q13547;B5BU61;Q5TEE2;B4DSK9;B7Z3S4;Q92769;B3KUJ5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;H3BM24 Q6IT96 78 89 HDAC1;HDAC2 Histone deacetylase;Histone deacetylase 1;Histone deacetylase 2 no no 2;3 3.1487E-23 160.67 3 1.1492 1.3881 3.7057 3 Median 1.1492 1.3881 3.7057 3 0 Median NaN NaN NaN 0 0 Median 326160000 149900000 176260000 326160000 149900000 176260000 0 0 0 11966 1715;1952 12295 31506;31507;31508 49123;49124;49125;49126 49125 1550 4 SIRPLLEGR IKEMGFTNMTEIQHKSIRPLLEGRDLLAAA TEIQHKSIRPLLEGRDLLAAAKTGSGKTLA K S I G R D 0 2 0 0 0 0 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 9 1 1039.6138 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 85 93 DDX18 ATP-dependent RNA helicase DDX18 yes no 2;3 9.6235E-05 94.363 4 3 1.019 1.1732 11.253 7 Median 0.93365 1.071 10.176 4 0 Median 1.4451 1.174 9.0029 3 0 Median 1063000000 477240000 585770000 944930000 428580000 516360000 118080000 48663000 69414000 11967 303 12296 31509;31510;31511;31512;31513;31514;31515 49127;49128;49129;49130;49131;49132;49133;49134;49135;49136;49137;49138 49133 12 SISGSIPAGR SGLGPPGRSVSGPGRSISGSIPAGRTVSNS SGPGRSISGSIPAGRTVSNSVPGRPVSSLG R S I G R T 1 1 0 0 0 0 0 2 0 2 0 0 0 0 1 3 0 0 0 0 0 0 10 0 943.50869 B4E223;Q68D10 B4E223 495 504 SPTY2D1 Protein SPT2 homolog yes no 2 0.043055 37.549 1 2.3306 2.0564 NaN 1 Median NaN NaN NaN 0 0 Median 2.3306 2.0564 NaN 1 0 Median 1393800 433170 960650 0 0 0 1393800 433170 960650 11968 1071 12297 31516 49139 49139 1 SISISVAGGGGGFGAAGGFGGR GGFGSRSLVGLGGTKSISISVAGGGGGFGA GGGGGFGAAGGFGGRGGGFGGGSGFGGGSG K S I G R G 3 1 0 0 0 0 0 10 0 2 0 0 0 2 0 3 0 0 0 1 0 0 22 0 1837.9071 CON__P35908;P35908 CON__P35908 71 92 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 4.2643E-06 81.494 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107520000 107520000 0 71992000 71992000 0 35528000 35528000 0 + 11969 1166 12298 31517;31518;31519 49140;49141;49142 49141 3 SISLPSLDLVSAK IMDFKKFSRSYQFSKSISLPSLDLVSAKIE SKSISLPSLDLVSAKIEGNLIFDPNNYLPK K S I A K I 1 0 0 1 0 0 0 0 0 1 3 1 0 0 1 4 0 0 0 1 0 0 13 0 1328.7551 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 639 651 yes yes 2 0.028507 43.512 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4567100 4567100 0 4567100 4567100 0 0 0 0 + 11970 1146 12299 31520 49143 49143 1 SISLYYTGEK EKTFEEKQGTEIDGRSISLYYTGEKGQNQD EIDGRSISLYYTGEKGQNQDYRGGKNSTWS R S I E K G 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 2 1 0 2 0 0 0 10 0 1159.5761 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 381 390 NCL Nucleolin yes no 2 9.6112E-06 105.52 2 1 1.1133 1.3196 0.25803 2 Median 1.1133 1.3196 0.25803 2 0 Median NaN NaN NaN 0 0 Median 1418900000 670060000 748810000 1418900000 670060000 748810000 0 0 0 11971 151 12300 31521;31522;31523 49144;49145;49146;49147;49148;49149 49147 6 SISVDLAESK KSLHPIHQGITELSRSISVDLAESKRLGCL TELSRSISVDLAESKRLGCLLLSSFQFSIQ R S I S K R 1 0 0 1 0 0 1 0 0 1 1 1 0 0 0 3 0 0 0 1 0 0 10 0 1047.5448 Q4G1A1;A8K3X3;Q9H410;Q5JW53;Q5JW54;Q5JW57 Q4G1A1 107 116 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 0.0016591 72.643 1 0.6861 0.69077 NaN 1 Median 0.6861 0.69077 NaN 1 0 Median NaN NaN NaN 0 0 Median 13474000 7027800 6446400 13474000 7027800 6446400 0 0 0 11972 727 12301 31524 49150 49150 1 SISVIDSPGILSGEK LNRFMCSQLPNQVLKSISVIDSPGILSGEK SISVIDSPGILSGEKQRISRGYDFCQVLQW K S I E K Q 0 0 0 1 0 0 1 2 0 3 1 1 0 0 1 4 0 0 0 1 0 0 15 0 1500.8035 A8K9B9;A0A024R9N6;Q9H223 A8K9B9 151 165 EHD4 EH domain-containing protein 4 yes no 2 0.038032 38.402 1 1 1.6978 1.6128 11.95 2 Median 1.4179 1.4821 NaN 1 0 Median 2.0329 1.755 NaN 1 0 Median 11577000 5529700 6047100 10201000 5158400 5043000 1375400 371310 1004100 11973 284 12302 31525;31526 49151;49152 49152 1 SITHDIEEK QPTSEERIPKTIEIKSITHDIEEKGVRMKL KTIEIKSITHDIEEKGVRMKLTVIDTPGFG K S I E K G 0 0 0 1 0 0 2 0 1 2 0 1 0 0 0 1 1 0 0 0 0 0 9 0 1070.5244 A0A0S2Z5W9;A0A024R8Q0;A0A0S2Z5A5;A0A024R8V0;Q9UHD8;K7EK18;K7EL40;K7EIR4;K7EKN4;K7EN52;K7ENQ5;K7EJZ2;K7ELJ9;K7ER52;K7EIE4;K7EQD7 A0A0S2Z5W9 111 119 SEPT9 Septin-9 yes no 2 0.001764 81.163 1 2.8125 2.7749 NaN 1 Median 2.8125 2.7749 NaN 1 0 Median NaN NaN NaN 0 0 Median 8488300 2587000 5901300 8488300 2587000 5901300 0 0 0 11974 254 12303 31527 49153 49153 1 SITILSTPEGTSAACK KIDVHRKENAGAAEKSITILSTPEGTSAAC ITILSTPEGTSAACKSILEIMHKEAQDIKF K S I C K S 2 0 0 0 1 0 1 1 0 2 1 1 0 0 1 3 3 0 0 0 0 0 16 0 1634.8185 O00425 O00425 243 258 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 4.7885E-05 91.202 1 1 0.82587 0.64714 NaN 1 Median NaN NaN NaN 0 0 Median 0.82587 0.64714 NaN 1 0 Median 3335700 1259500 2076200 0 0 0 3335700 1259500 2076200 11975 1364 12304 31528;31529 49154;49155 49154 2 SITVLVEGENTR MQEHSDQVPVGNIPRSITVLVEGENTRIAQ IPRSITVLVEGENTRIAQPGDHVSVTGIFL R S I T R I 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 1 2 0 0 2 0 0 12 0 1316.6936 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;C9J8M6 B3KUD7 145 156 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 7.8154E-13 132.78 2 2 1.1632 1.1528 25.122 4 Median 1.2721 1.4122 0.53687 2 0 Median 1.0592 0.91597 4.3632 2 0 Median 115240000 52978000 62264000 106540000 48885000 57657000 8700600 4093100 4607600 11976 560 12305 31530;31531;31532;31533 49156;49157;49158;49159;49160;49161 49157 6 SIVDYKPNLDLLEQQHQLIQEALIFDNK GTLEDQLSHLKQYERSIVDYKPNLDLLEQQ QQHQLIQEALIFDNKHTNYTMEHIRVGWEQ R S I N K H 1 0 2 3 0 4 2 0 1 3 5 2 0 1 1 1 0 0 1 1 0 0 28 1 3323.7402 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144;A0A0S2Z3X3;A0A0S2Z3C0 A0A0S2Z3G9 696 723 ACTN4 Alpha-actinin-4 yes no 4 0.033346 11.785 1 1.6349 1.8629 NaN 1 Median 1.6349 1.8629 NaN 1 0 Median NaN NaN NaN 0 0 Median 10090000 4375100 5714400 10090000 4375100 5714400 0 0 0 11977 548 12306 31534 49162 49162 1 SIVGEIVR LVAAVSLWATDYGMKSIVGEIVREIGQKCP ATDYGMKSIVGEIVREIGQKCPQELSRDPS K S I V R E 0 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 0 2 0 0 8 0 871.51272 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 273 280 NCAPD2 Condensin complex subunit 1 yes no 2 0.01739 60.478 2 2 1.1574 1.1643 10.751 4 Median 0.92397 1.0673 0.69477 2 0 Median 1.488 1.2839 2.2091 2 0 Median 445290000 230400000 214890000 372380000 202160000 170220000 72911000 28239000 44673000 11978 908 12307 31535;31536;31537;31538 49163;49164;49165;49166;49167;49168;49169 49165 7 SIYNLNEDEELTHYGQSLADIEK MKRFALEQQRHHEKKSIYNLNEDEELTHYG EELTHYGQSLADIEKHNDIVDSDSDAEDRG K S I E K H 1 0 2 2 0 1 4 1 1 2 3 1 0 0 0 2 1 0 2 0 0 0 23 0 2680.2504 A8KA74;P78316;E9PFK5 A8KA74 117 139 NOP14 Nucleolar protein 14 yes no 3 1.7946E-30 133.95 2 2 1.1951 1.1759 3.7984 4 Median 1.0421 1.1759 3.7026 2 0 Median 1.3864 1.1832 5.4032 2 0 Median 303530000 136830000 166700000 142940000 68385000 74555000 160590000 68446000 92147000 11979 790 12308 31539;31540;31541;31542 49170;49171;49172;49173;49174;49175;49176;49177;49178;49179;49180 49178 11 SIYSLILGQDNAADQSR VSSASWYFLNVFGLRSIYSLILGQDNAADQ YSLILGQDNAADQSRMMQEQMTGAAMAMPA R S I S R M 2 1 1 2 0 2 0 1 0 2 2 0 0 0 0 3 0 0 1 0 0 0 17 0 1849.917 Q9P0I2 Q9P0I2 181 197 EMC3 ER membrane protein complex subunit 3 yes yes 2 2.25E-09 108.72 1 1 0.6419 0.63543 NaN 1 Median 0.6419 0.63543 NaN 1 0 Median NaN NaN NaN 0 0 Median 14487000 7702400 6784400 12316000 7702400 4613600 2170800 0 2170800 11980 2092 12309 31543;31544 49181;49182;49183;49184;49185 49182 5 SIYSQIQEQR YPHIKRIARHRHLPKSIYSQIQEQRIMKEA RHLPKSIYSQIQEQRIMKEARRRKEVNRIK K S I Q R I 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 2 0 0 1 0 0 0 10 0 1250.6255 A0A087WT20;Q9NV06 A0A087WT20 551 560 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 1.8312E-79 234.47 2 2 1.0319 1.0003 12.979 4 Median 0.81002 0.9181 5.6457 2 0 Median 1.3199 1.118 9.2417 2 0 Median 277610000 122870000 154730000 232940000 103920000 129020000 44674000 18956000 25718000 11981 402 12310 31545;31546;31547;31548 49186;49187;49188;49189;49190;49191;49192;49193 49187 8 SIYYITGESK TSLSEYVSRMKETQKSIYYITGESKEQVAN KETQKSIYYITGESKEQVANSAFVERVRKR K S I S K E 0 0 0 0 0 0 1 1 0 2 0 1 0 0 0 2 1 0 2 0 0 0 10 0 1159.5761 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF8 B4DMA2 444 453 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 1.4212E-05 102.07 2 2 1.7587 1.6743 42.859 4 Median 2.1213 2.4241 0.49319 2 0 Median 1.438 1.1539 0.79048 2 0 Median 367410000 123200000 244210000 337430000 110730000 226710000 29973000 12469000 17503000 11982 379;1800 12311 31549;31550;31551;31552 49194;49195;49196;49197;49198;49199;49200;49201 49198 8 SKAEAESLYQSK IIAEVKAQYEDIAQKSKAEAESLYQSKYEE AQKSKAEAESLYQSKYEELQITAGRHGDSV K S K S K Y 2 0 0 0 0 1 2 0 0 0 1 2 0 0 0 3 0 0 1 0 0 0 12 1 1339.662 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 365 376 KRT1 Keratin, type II cytoskeletal 1 no no 2 2.9963E-58 182.71 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18093000 18093000 0 18093000 18093000 0 0 0 0 + 11983 1308;1309 12312 31553;31554 49202;49203 49202 2 SKGESDDFHMDFDSAVAPR SNFEKIVSKAVTSKKSKGESDDFHMDFDSA SDDFHMDFDSAVAPRAKSVRAKKPIKYLEE K S K P R A 2 1 0 4 0 0 1 1 1 0 0 1 1 2 1 3 0 0 0 1 0 0 19 1 2109.9062 P11388 P11388 1491 1509 TOP2A DNA topoisomerase 2-alpha yes yes 3 2.0225E-06 76.027 1 0.81154 0.94861 NaN 1 Median 0.81154 0.94861 NaN 1 0 Median NaN NaN NaN 0 0 Median 49948000 26826000 23122000 49948000 26826000 23122000 0 0 0 11984 1471 12313 31555 49204;49205 49205 1199 2 SKPNLPSESR GTNQETRSRSRSNSKSKPNLPSESRSRSKS RSNSKSKPNLPSESRSRSKSASKTRSRSKS K S K S R S 0 1 1 0 0 0 1 0 0 0 1 1 0 0 2 3 0 0 0 0 0 0 10 1 1113.5778 A8K644;Q08170;Q59EF5 A8K644 450 459 SFRS4;SRSF4 Serine/arginine-rich splicing factor 4 yes no 2 0.029264 60.167 1 0.79102 0.88102 NaN 1 Median 0.79102 0.88102 NaN 1 0 Median NaN NaN NaN 0 0 Median 20044000 10574000 9469900 20044000 10574000 9469900 0 0 0 11985 755 12314 31556 49206 49206 1 SKVEDPEINSIQDIK LTLSLRSSRTNPETKSKVEDPEINSIQDIK SKVEDPEINSIQDIKEGQLLRGYVGSIQPH K S K I K E 0 0 1 2 0 1 2 0 0 3 0 2 0 0 1 2 0 0 0 1 0 0 15 1 1713.8785 Q14690 Q14690 1308 1322 PDCD11 Protein RRP5 homolog yes yes 2;3 2.0839E-09 115.24 3 3 1.2013 1.1936 6.4292 6 Median 1.0744 1.2713 3.1369 3 0 Median 1.3444 1.1486 2.1758 3 0 Median 102490000 47832000 54660000 65766000 31402000 34364000 36726000 16430000 20296000 11986 1741 12315 31557;31558;31559;31560;31561;31562 49207;49208;49209;49210;49211;49212;49213;49214;49215 49208 9 SKVPVLDEGLTSVETYTPAIR LCAPSVYEGKIFTQKSKVPVLDEGLTSVET DEGLTSVETYTPAIRANDNKSMADVLGDGG K S K I R A 1 1 0 1 0 0 2 1 0 1 2 1 0 0 2 2 3 0 1 3 0 0 21 1 2274.2107 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1426 1446 AHCTF1 Protein ELYS yes no 3 5.7284E-07 51.469 1 3.0421 2.5726 NaN 1 Median NaN NaN NaN 0 0 Median 3.0421 2.5726 NaN 1 0 Median 10223000 2596000 7626600 0 0 0 10223000 2596000 7626600 11987 1945 12316 31563 49216 49216 1 SKYEALQTFAR ARENSSMRLELDALRSKYEALQTFARTVAR DALRSKYEALQTFARTVARGPVAPSKVATT R S K A R T 2 1 0 0 0 1 1 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 11 1 1312.6776 A0A024R804;A8WFP5;O60675;A0A024R8X1;O15525 A0A024R804 109 119 MAFK;hCG_1991559;MAFG Transcription factor MafK;Transcription factor MafG no no 2 0.0013137 90.913 2 1.9257 1.6452 5.0311 2 Median NaN NaN NaN 0 0 Median 1.9257 1.6452 5.0311 2 0 Median 23518000 8095000 15423000 0 0 0 23518000 8095000 15423000 11988 239;262 12317 31564;31565 49217;49218 49218 2 SLAAQEPASVLEEAR KPRTPRCAAPQIRSRSLAAQEPASVLEEAR SLAAQEPASVLEEARLRLHVSAVPESLPCR R S L A R L 4 1 0 0 0 1 3 0 0 0 2 0 0 0 1 2 0 0 0 1 0 0 15 0 1569.7999 B7Z8H0;Q96F82;Q13415;A8K794 B7Z8H0 473 487 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 2.0773E-10 110.31 2 2 1.7461 1.4749 10.022 2 Median NaN NaN NaN 0 0 Median 1.7461 1.4749 10.022 2 0 Median 36346000 5078700 31267000 22071000 0 22071000 14275000 5078700 9196400 11989 1103 12318 31566;31567;31568;31569 49219;49220;49221;49222;49223;49224;49225 49219 7 SLAGSSGPGASSGTSGDHGELVVR VILRDIARARENIQKSLAGSSGPGASSGTS ASSGTSGDHGELVVRIASLEVENQSLRGVV K S L V R I 2 1 0 1 0 0 1 6 1 0 2 0 0 0 1 6 1 0 0 2 0 0 24 0 2184.0407 D3DWK1;B2RAR6;E9PRY8;P29692;E9PK01;A0A087X1X7;Q71RH4;Q9H7G6;E9PQ49;E9PI39;E9PMW7;E9PIZ1;E9PPR1;E9PL12;H0YCK7 D3DWK1 426 449 EEF1D Elongation factor 1-delta yes no 3 2.0432E-27 112.85 2 2 1.5358 1.4806 47.31 4 Median 2.0964 2.233 3.7885 2 0 Median 1.139 0.98554 3.2343 2 0 Median 84734000 30150000 54583000 75842000 26463000 49379000 8891200 3687200 5204000 11990 875 12319 31570;31571;31572;31573 49226;49227;49228;49229;49230;49231;49232 49229 7 SLALIFNSLQGQLHPTPDLK HTIQGTIKDGGILPRSLALIFNSLQGQLHP FNSLQGQLHPTPDLKPLLSNEVIWLDSKQI R S L L K P 1 0 1 1 0 2 0 1 1 1 5 1 0 1 2 2 1 0 0 0 0 0 20 0 2191.2001 O95235;D6RBN1 O95235 183 202 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2;3 2.6139E-33 150.45 4 2 0.74721 0.77582 19.69 6 Median 0.71738 0.70657 9.1883 4 0 Median 1.299 1.025 11.761 2 0 Median 124770000 63727000 61047000 90862000 50298000 40564000 33912000 13429000 20483000 11991 1421 12320 31574;31575;31576;31577;31578;31579 49233;49234;49235;49236;49237;49238;49239 49236 7 SLALSVAVNVAPGR LADVSGIDWMVRHGRSLALSVAVNVAPGRL RSLALSVAVNVAPGRLCAGRYSSDVQEMIL R S L G R L 3 1 1 0 0 0 0 1 0 0 2 0 0 0 1 2 0 0 0 3 0 0 14 0 1352.7776 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2486 2499 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.00045568 83 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11992 1205 12321 31580 49240 49240 1 SLAMSVTTSGFSEFTPQSILR ELHLLETPLVVKKAKSLAMSVTTSGFSEFT TTSGFSEFTPQSILRSTLRSTPLASPSPSP K S L L R S 1 1 0 0 0 1 1 1 0 1 2 0 1 2 1 5 3 0 0 1 0 0 21 0 2258.1253 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1184 1204 AHCTF1 Protein ELYS yes no 2 3.5535E-07 56.482 1 1.7758 1.8662 NaN 1 Median 1.7758 1.8662 NaN 1 0 Median NaN NaN NaN 0 0 Median 11569000 3689400 7880100 11569000 3689400 7880100 0 0 0 11993 1945 12322 31581 49241;49242 49241 1792 2 SLANDFSTNSTK GQNVLEILQDCFEEKSLANDFSTNSTKSVP EEKSLANDFSTNSTKSVPNSTRKIKDTCIQ K S L T K S 1 0 2 1 0 0 0 0 0 0 1 1 0 1 0 3 2 0 0 0 0 0 12 0 1283.5994 Q03188 Q03188 46 57 CENPC Centromere protein C yes yes 2 9.2076E-18 140.78 2 4 0.69795 0.73035 3.1658 2 Median 0.69795 0.73035 3.1658 2 0 Median NaN NaN NaN 0 0 Median 62689000 37434000 25256000 58715000 33460000 25256000 3974100 3974100 0 11994 1681 12323 31582;31583;31584;31585;31586;31587 49243;49244;49245;49246;49247;49248;49249;49250;49251;49252;49253 49244 11 SLAPAGIADAPLSPLLTCIPNK CLIKFSSPHLLEALKSLAPAGIADAPLSPL ADAPLSPLLTCIPNKRMNYFKIRDK_____ K S L N K R 4 0 1 1 1 0 0 1 0 2 4 1 0 0 4 2 1 0 0 0 0 0 22 0 2218.2031 Q96H22 Q96H22 308 329 CENPN Centromere protein N yes yes 2 4.067E-07 56.482 2 0.63371 0.63578 3.0666 2 Median 0.63371 0.63578 3.0666 2 0 Median NaN NaN NaN 0 0 Median 18623000 11257000 7365800 18623000 11257000 7365800 0 0 0 11995 1970 12324 31588;31589 49254;49255;49256;49257 49255 4 SLASIVQFYYMWK GKDFNDIRQDFLPWKSLASIVQFYYMWKTT WKSLASIVQFYYMWKTTDRYIQQKRLKAAE K S L W K T 1 0 0 0 0 1 0 0 0 1 1 1 1 1 0 2 0 1 2 1 0 0 13 0 1634.8167 A0A024R534;O94776 A0A024R534 299 311 MTA2 Metastasis-associated protein MTA2 yes no 2 4.1976E-07 111.61 1 0.71228 0.75718 NaN 1 Median 0.71228 0.75718 NaN 1 0 Median NaN NaN NaN 0 0 Median 4065800 1998000 2067800 4065800 1998000 2067800 0 0 0 11996 168 12325 31590 49258 49258 145 1 SLATTRPTVNADDLLK DKLLEPVVCMSDMLRSLATTRPTVNADDLL LATTRPTVNADDLLKVKKFSEDFGQES___ R S L L K V 2 1 1 2 0 0 0 0 0 0 3 1 0 0 1 1 3 0 0 1 0 0 16 1 1713.9261 A0A024R705;Q9UN37;Q9NXK5;Q9UF30;Q49AN7 A0A024R705 410 425 VPS4A;DKFZp434E0418 Vacuolar protein sorting-associated protein 4A yes no 3 0.0013149 39.143 2 2.0534 2.2767 6.821 2 Median 2.0534 2.2767 6.821 2 0 Median NaN NaN NaN 0 0 Median 32797000 11579000 21219000 32797000 11579000 21219000 0 0 0 11997 213 12326 31591;31592 49259;49260 49259 1 SLAVPTIEELEDEEER IDLQNLLTTQSPSVKSLAVPTIEELEDEEE LAVPTIEELEDEEERNHRQMIKEAFAGDDV K S L E R N 1 1 0 1 0 0 6 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 16 0 1857.8844 Q9BVJ6;B4E343 Q9BVJ6 574 589 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 3.6394E-06 88.552 2 0.92359 0.97728 3.6543 2 Median 0.92359 0.97728 3.6543 2 0 Median NaN NaN NaN 0 0 Median 74648000 39393000 35255000 74648000 39393000 35255000 0 0 0 11998 2008 12327 31593;31594 49261;49262;49263;49264 49262 4 SLAVPTIEELEDEEERNHR IDLQNLLTTQSPSVKSLAVPTIEELEDEEE PTIEELEDEEERNHRQMIKEAFAGDDVIRD K S L H R Q 1 2 1 1 0 0 6 0 1 1 2 0 0 0 1 1 1 0 0 1 0 0 19 1 2265.0873 Q9BVJ6;B4E343 Q9BVJ6 574 592 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3;4 0.0041387 28.472 2 3 1.4604 1.2375 22.667 5 Median 0.80051 0.86644 5.4382 2 0 Median 1.5255 1.2625 6.3408 3 0 Plateau 86169000 39072000 47096000 45926000 23734000 22192000 40242000 15338000 24904000 11999 2008 12328 31595;31596;31597;31598;31599 49265;49266;49267;49268;49269;49270 49265 5 SLAVSGLGVIGR SLECTLILTEGDSAKSLAVSGLGVIGRDRY SAKSLAVSGLGVIGRDRYGVFPLRGKILNV K S L G R D 1 1 0 0 0 0 0 3 0 1 2 0 0 0 0 2 0 0 0 2 0 0 12 0 1127.6663 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 460 471 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.00017181 91.584 2 2 0.8163 0.80064 16.008 4 Median 0.59808 0.68183 8.2976 2 0 Median 1.058 0.8883 0.27269 2 0 Median 313250000 193660000 119590000 273630000 174390000 99240000 39621000 19267000 20354000 12000 1679 12329 31600;31601;31602;31603 49271;49272;49273;49274;49275;49276;49277 49272 7 SLAYLTAATHGLDEEAESLK DVSERVRILKNCGQKSLAYLTAATHGLDEE TAATHGLDEEAESLKETFDPEKETIPDIDP K S L L K E 4 0 0 1 0 0 3 1 1 0 4 1 0 0 0 2 2 0 1 0 0 0 20 0 2118.0481 P53621 P53621 756 775 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2;3 7.4067E-07 59.512 2 2 0.91999 0.73511 36.953 3 Median 1.1237 1.1349 NaN 1 0 Median 0.80032 0.63249 21.262 2 0 Median 29016000 10054000 18961000 22279000 5780600 16499000 6736500 4273800 2462700 12001 1607 12330 31604;31605;31606;31607 49278;49279;49280;49281;49282;49283;49284 49278 7 SLCIGATYDVTDSR AFIIRSFGGEVSWDKSLCIGATYDVTDSRI KSLCIGATYDVTDSRITHQIVDRPGQQTSV K S L S R I 1 1 0 2 1 0 0 1 0 1 1 0 0 0 0 2 2 0 1 1 0 0 14 0 1556.7141 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 342 355 PES1 Pescadillo homolog yes no 2 2.6687E-05 96.64 2 1.1338 0.9706 0.34332 2 Median NaN NaN NaN 0 0 Median 1.1338 0.9706 0.34332 2 0 Median 52744000 24105000 28639000 0 0 0 52744000 24105000 28639000 12002 886 12331 31608;31609 49285;49286;49287;49288 49286 4 SLCNLEESITSAGR PEFSELCIWLGSQIKSLCNLEESITSAGRD KSLCNLEESITSAGRDDLESFQLEISGFLK K S L G R D 1 1 1 0 1 0 2 1 0 1 2 0 0 0 0 3 1 0 0 0 0 0 14 0 1535.725 Q52LJ0 Q52LJ0 61 74 FAM98B Protein FAM98B yes yes 2 0.00023028 65.03 1 1 0.93678 0.9612 NaN 1 Median 0.93678 0.9612 NaN 1 0 Median NaN NaN NaN 0 0 Median 14355000 8294400 6061000 14355000 8294400 6061000 0 0 0 12003 1782 12332 31610;31611 49289;49290 49289 2 SLDDDLDGVPLDATEDSK IDATPIDDLDGVPIKSLDDDLDGVPLDATE DDLDGVPLDATEDSKKNEPIFKVAPSKWEA K S L S K K 1 0 0 6 0 0 1 1 0 0 3 1 0 0 1 2 1 0 0 1 0 0 18 0 1903.8535 O15042;E7ET15;H7C4V2 O15042 731 748 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.031272 40.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12004 1374 12333 31612 49291 49291 1 SLDEQANQENDALHK VTGEGIEELKNCIRKSLDEQANQENDALHK SLDEQANQENDALHKKQLLNLWISDTMSST K S L H K K 2 0 2 2 0 2 2 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 15 0 1710.7809 A4D1E9 A4D1E9 342 356 GTPBP10 GTP-binding protein 10 yes yes 2 4.1826E-05 85.958 2 0.71771 0.72486 NaN 1 Median 0.71771 0.72486 NaN 1 0 Median NaN NaN NaN 0 0 Median 10409000 4292800 6115900 10409000 4292800 6115900 0 0 0 12005 663 12334 31613;31614 49292;49293;49294 49293 3 SLDFGFTIK QFSDMRISINQTPGKSLDFGFTIKWDIPGI NQTPGKSLDFGFTIKWDIPGIFVASVEAGS K S L I K W 0 0 0 1 0 0 0 1 0 1 1 1 0 2 0 1 1 0 0 0 0 0 9 0 1026.5386 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424;H0YE95;H0YDG6 A0A1P7ZIM8 666 674 LMO7 LIM domain only protein 7 yes no 2 0.040246 49.715 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12006 640 12335 31615 49295 49295 1 SLDHQGINFK FNKVWREQNEKYYLKSLDHQGINFKQNDTK KYYLKSLDHQGINFKQNDTKVLRSKSLLNE K S L F K Q 0 0 1 1 0 1 0 1 1 1 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1157.5829 Q96ST3 Q96ST3 728 737 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0078827 60.298 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12007 1990 12336 31616 49296 49296 1 SLDIFIK KYNEFSVSLLNEDPKSLDIFIKAVHTTKEL SLLNEDPKSLDIFIKAVHTTKELYAGMPTI K S L I K A 0 0 0 1 0 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 7 0 834.48511 B2RWN5;Q9H583;A0A024R3R7;A2VDI1;B4E263;B7ZAU8 B2RWN5 1081 1087 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.027742 73.039 2 1.0038 1.1059 0.47901 2 Median 1.0038 1.1059 0.47901 2 0 Median NaN NaN NaN 0 0 Median 108150000 50392000 57759000 108150000 50392000 57759000 0 0 0 12008 897 12337 31617;31618 49297;49298;49299 49298 3 SLDIQVPNFPADETK LESLRVIITNFPAAKSLDIQVPNFPADETK SLDIQVPNFPADETKGFHQVPFAPIVFIER K S L T K G 1 0 1 2 0 1 1 0 0 1 1 1 0 1 2 1 1 0 0 1 0 0 15 0 1672.8308 Q53HS0;P47897;A8K3A8;Q96AW5;B4DNN3;A0A1B0GVU9;H7C0R3;Q9H3A5;Q9BUZ3;B4DDN1;A0A0U1RRC8;A0A0U1RQX5 Q53HS0 587 601 QARS Glutamine--tRNA ligase yes no 2 4.9158E-05 83.045 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24149000 0 24149000 24149000 0 24149000 0 0 0 12009 1575 12338 31619;31620 49300;49301 49300 2 SLDLDGIIAEVK QISDTSVVLSMDNSRSLDLDGIIAEVKAQY NSRSLDLDGIIAEVKAQYEEMAKCSRAEAE R S L V K A 1 0 0 2 0 0 1 1 0 2 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1271.6973 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 254 265 KRT7 Keratin, type II cytoskeletal 7 no no 2 1.3299E-12 129.16 2 2 0.96096 0.96843 24.164 4 Median 0.96096 1.1047 1.4506 2 0 Median 0.93064 0.75646 17.765 2 0 Median 441810000 226110000 215700000 391050000 202290000 188770000 50758000 23820000 26938000 + 12010 1171;1158 12339 31621;31622;31623;31624 49302;49303;49304;49305;49306;49307;49308;49309 49304 8 SLDLDSIIAEVK QISETNVILSMDNNRSLDLDSIIAEVKAQY NNRSLDLDSIIAEVKAQYEDIAQKSKAEAE R S L V K A 1 0 0 2 0 0 1 0 0 2 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1301.7078 CON__Q8BGZ7;H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9 H6VRG3 344 355 KRT1 Keratin, type II cytoskeletal 1 no no 2 4.3732E-73 198.62 6 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3495700000 3495700000 0 2167500000 2167500000 0 1328200000 1328200000 0 + 12011 1308;1180 12340 31625;31626;31627;31628;31629;31630;31631;31632 49310;49311;49312;49313;49314;49315;49316;49317;49318;49319;49320 49318 11 SLDLFNCEITNLEDYR DLSTVEALQNLKNLKSLDLFNCEITNLEDY LDLFNCEITNLEDYRESIFELLQQITYLDG K S L Y R E 0 1 2 2 1 0 2 0 0 1 3 0 0 1 0 1 1 0 1 0 0 0 16 0 2000.915 Q53F20;Q9BTT0;E9PPH5 Q53F20 117 132 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 1.4592E-12 122.39 2 2 1.4041 1.3131 46.1 4 Median 1.8833 1.9178 0.57919 2 0 Median 1.0268 0.86502 6.0343 2 0 Median 54933000 22191000 32742000 39171000 14531000 24640000 15762000 7659900 8102000 12012 1784 12341 31633;31634;31635;31636 49321;49322;49323;49324;49325;49326;49327 49323 7 SLDLIESLLR KAPPEDDNREIATWKSLDLIESLLRLAEVG IATWKSLDLIESLLRLAEVGQYEQVKQLFS K S L L R L 0 1 0 1 0 0 1 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 10 0 1157.6656 A5YKK6 A5YKK6 450 459 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 6.8095E-08 112.84 3 1.6495 1.7515 NaN 1 Median 1.6495 1.7515 NaN 1 0 Median NaN NaN NaN 0 0 Median 5229100 1413100 3816000 5229100 1413100 3816000 0 0 0 12013 676 12342 31637;31638;31639 49328;49329;49330;49331 49328 4 SLDLSGLELLSEHLDPK MQRGRPKSDRLGKIRSLDLSGLELLSEHLD DLSGLELLSEHLDPKLLCRLTQLQELDLSN R S L P K L 0 0 0 2 0 0 2 1 1 0 6 1 0 0 1 3 0 0 0 0 0 0 17 0 1864.9782 A0A140VJD0;Q9UFC0 A0A140VJD0 25 41 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 7.8497E-05 62.891 2 1.4769 1.4861 19.172 2 Median 1.4769 1.4861 19.172 2 0 Median NaN NaN NaN 0 0 Median 12673000 5893500 6779600 12673000 5893500 6779600 0 0 0 12014 599 12343 31640;31641 49332;49333;49334;49335 49335 4 SLDMDSIIAEVK QISDTSVVLSMDNSRSLDMDSIIAEVKAQY NSRSLDMDSIIAEVKAQYEDIANRSRAEAE R S L V K A 1 0 0 2 0 0 1 0 0 2 1 1 1 0 0 2 0 0 0 1 0 0 12 0 1319.6643 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 253 264 KRT8 Keratin, type II cytoskeletal 8 yes no 2 1.254E-08 119.53 4 4 1.8179 1.621 36.679 7 Median 1.9874 2.3139 49.221 4 0 Linear 2.1636 1.6811 5.3023 3 0 Plateau 384520000 141200000 243320000 345370000 127440000 217930000 39158000 13761000 25396000 + 12015 1156 12344;12345 31642;31643;31644;31645;31646;31647;31648;31649 49336;49337;49338;49339;49340;49341;49342;49343;49344;49345;49346;49347;49348 49336 868 13 SLDNNYSTPNER DREEIQMSNMGSNTKSLDNNYSTPNERGDH NTKSLDNNYSTPNERGDHNKTLDRSGDLGD K S L E R G 0 1 3 1 0 0 1 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 12 0 1408.6219 Q7KZJ3;A0A024R4Z0;Q96FS1;Q68DU0;C9JZR2;O60716;H0YC95 Q7KZJ3 570 581 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 2 0.018528 40.715 2 1.3026 1.1389 8.423 2 Median NaN NaN NaN 0 0 Median 1.3026 1.1389 8.423 2 0 Median 2399800 1154100 1245800 0 0 0 2399800 1154100 1245800 12016 165 12346 31650;31651 49349;49350;49351 49350 3 SLDPADERDDVLAK DRMTEDALRLNLLKRSLDPADERDDVLAKR RSLDPADERDDVLAKRLKMEGHEAMERLKM R S L A K R 2 1 0 4 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 14 1 1542.7526 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 17 30 GATAD2B Transcriptional repressor p66-beta yes no 2;3 0.00080368 76.927 2 0.53633 0.62197 35.417 2 Median 0.53633 0.62197 35.417 2 0 Median NaN NaN NaN 0 0 Median 81579000 46204000 35375000 81579000 46204000 35375000 0 0 0 12017 591 12347 31652;31653 49352;49353;49354;49355;49356 49353 5 SLDPENSETELER ILGTLNKSTSSRSLKSLDPENSETELERIL LKSLDPENSETELERILRRRKVTAEADSSS K S L E R I 0 1 1 1 0 0 4 0 0 0 2 0 0 0 1 2 1 0 0 0 0 0 13 0 1517.6845 A0MZ66 A0MZ66 467 479 KIAA1598 Shootin-1 yes yes 2 0.0033495 65.5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2550400 0 2550400 2550400 0 2550400 0 0 0 12018 644 12348 31654;31655 49357;49358 49357 2 SLDQAINDK TSKEERDKWIKKELKSLDQAINDKKRQIAA IKKELKSLDQAINDKKRQIAAIHKDLEDTE K S L D K K 1 0 1 2 0 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 9 0 1002.4982 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 401 409 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.00014796 97.431 2 2 1.3854 1.1561 9.1025 3 Median 0.99816 1.0035 NaN 1 0 Median 1.4321 1.1726 2.0046 2 0 Median 34458000 11155000 23303000 30177000 9431500 20745000 4280600 1723500 2557100 12019 803 12349 31656;31657;31658;31659 49359;49360;49361;49362;49363 49361 5 SLEAQVAHADQQLR KEAEQTCRHLTAQVRSLEAQVAHADQQLRD RSLEAQVAHADQQLRDLGKFQVATDALKSR R S L L R D 3 1 0 1 0 3 1 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 14 0 1564.7958 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1668 1681 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 6.0826E-21 140.01 2 3 1.5851 1.3267 25.673 5 Median 0.81561 0.88424 22.093 2 0 Median 1.6153 1.3302 2.5671 3 0 Median 98669000 49710000 48959000 73215000 39900000 33315000 25454000 9810800 15644000 12020 186;1747 12350 31660;31661;31662;31663;31664 49364;49365;49366;49367;49368;49369;49370;49371;49372;49373 49366 10 SLEDALAEAQR ELEKRKDKETGGILRSLEDALAEAQRVNTK GILRSLEDALAEAQRVNTKSQSAFDLKKKN R S L Q R V 3 1 0 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1201.5939 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;Q7Z2X1 A0A024R158 298 308 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.5001E-23 174.02 2 2 1.2026 1.2204 24.245 4 Median 0.82765 0.97368 5.2361 2 0 Median 1.7019 1.4769 0.27686 2 0 Median 1170000000 612150000 557870000 1009800000 553290000 456550000 160180000 58856000 101320000 12021 69 12351 31665;31666;31667;31668 49374;49375;49376;49377;49378;49379;49380;49381;49382 49375 9 SLEDLQDEYDFK RNVKDKVMCIEHEIKSLEDLQDEYDFKCKT EIKSLEDLQDEYDFKCKTLQNREHETNGVA K S L F K C 0 0 0 3 0 1 2 0 0 0 2 1 0 1 0 1 0 0 1 0 0 0 12 0 1500.662 J3KPM9;P42224;E7EPD2;D2KFR9;A5D905 J3KPM9 164 175 STAT1 Signal transducer and activator of transcription;Signal transducer and activator of transcription 1-alpha/beta yes no 2 0.043174 42.718 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1452500 0 1452500 0 0 0 1452500 0 1452500 12022 1326 12352 31669 49383 49383 1 SLEEEVTCSICLDYLR ______________________________ LEEEVTCSICLDYLRDPVTIDCGHVFCRSC R S L L R D 0 1 0 1 2 0 3 0 0 1 3 0 0 0 0 2 1 0 1 1 0 0 16 0 1985.9074 A0A024RCP3;Q12899;A2AE48;A0A0G2JIW2;A2AE50;Q5SPU2 A0A024RCP3 9 24 TRIM26 Tripartite motif-containing protein 26 yes no 2 0.018756 41.684 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4166300 4166300 0 4166300 4166300 0 0 0 0 12023 365 12353 31670 49384 49384 1 SLEEGEGPIAVIMTPTR IAFLLPMFRHIMDQRSLEEGEGPIAVIMTP EEGEGPIAVIMTPTRELALQITKECKKFSK R S L T R E 1 1 0 0 0 0 3 2 0 2 1 0 1 0 2 1 2 0 0 1 0 0 17 0 1798.9135 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 439 455 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 1.7937E-07 96.734 2 1.9129 1.9633 2.8588 2 Median 1.9129 1.9633 2.8588 2 0 Median NaN NaN NaN 0 0 Median 21622000 7765200 13857000 21622000 7765200 13857000 0 0 0 12024 511 12354 31671;31672 49385;49386 49386 359 2 SLEEIYLFSLPIK PVTKLGRLVKDMKIKSLEEIYLFSLPIKES IKSLEEIYLFSLPIKESEIIDFFLGASLKD K S L I K E 0 0 0 0 0 0 2 0 0 2 3 1 0 1 1 2 0 0 1 0 0 0 13 0 1550.8596 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PMM9;E9PQD7;E9PPT0;Q8NI61;D3DU83;H3BNG3;H0YE27 P15880 77 89 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2 1.708E-38 177.57 2 2 0.89361 0.8778 51.209 4 Median 1.0702 1.2155 0.83725 2 0 Median 0.6116 0.52367 27.853 2 0 Median 466950000 237840000 229120000 286620000 139620000 147000000 180340000 98220000 82115000 12025 1485 12355 31673;31674;31675;31676 49387;49388;49389;49390;49391;49392;49393;49394 49387 8 SLEGADLPNLLFYGPPGTGK DEVAFQEEVVAVLKKSLEGADLPNLLFYGP DLPNLLFYGPPGTGKTSTILAAARELFGPE K S L G K T 1 0 1 1 0 0 1 4 0 0 4 1 0 1 3 1 1 0 1 0 0 0 20 0 2045.047 P35249;C9J8M3;C9JZI1;C9JXZ7;C9JTT7;C9JGY5;F8WE44 P35249 65 84 RFC4 Replication factor C subunit 4 yes no 2 9.0063E-05 44.511 2 1.0511 1.0861 0.26613 2 Median 1.0511 1.0861 0.26613 2 0 Median NaN NaN NaN 0 0 Median 34321000 17741000 16581000 34321000 17741000 16581000 0 0 0 12026 1541 12356 31677;31678 49395;49396;49397 49395 3 SLEGGNFIAGVLIQGTQER TTTVKEVAEMDSVKRSLEGGNFIAGVLIQG GNFIAGVLIQGTQERMSIPEALRRHILRPG R S L E R M 1 1 1 0 0 2 2 4 0 2 2 0 0 1 0 1 1 0 0 1 0 0 19 0 1988.0327 A0A075B730;A0A087X1U6;P58107 A0A075B730 1541 1559 EPPK1 Epiplakin no no 2 0.00028629 44.457 1 3.0654 3.166 NaN 1 Median 3.0654 3.166 NaN 1 0 Median NaN NaN NaN 0 0 Median 23835000 4514500 19320000 23835000 4514500 19320000 0 0 0 12027 397;1622 12357 31679 49398 49398 1 SLEGTEAQVFK LCGMLHRPRHATVSRSLEGTEAQVFKAKFK TVSRSLEGTEAQVFKAKFKNWDDVLTVDYT R S L F K A 1 0 0 0 0 1 2 1 0 0 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1207.6085 B4DIX0;Q13045 B4DIX0 791 801 FLII Protein flightless-1 homolog yes no 2 0.02141 43.282 1 1.4188 1.4173 NaN 1 Median 1.4188 1.4173 NaN 1 0 Median NaN NaN NaN 0 0 Median 6586300 2680600 3905800 6586300 2680600 3905800 0 0 0 12028 984 12358 31680 49399 49399 1 SLEHSGSLDDPNR TEKSWPKDSSVVYAKSLEHSGSLDDPNRIS AKSLEHSGSLDDPNRISLVKRNAVLPSKPL K S L N R I 0 1 1 2 0 0 1 1 1 0 2 0 0 0 1 3 0 0 0 0 0 0 13 0 1425.6484 Q9ULJ3;Q5H9S0 Q9ULJ3 219 231 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 2.3253E-13 128.01 1 0.62577 0.62544 NaN 1 Median 0.62577 0.62544 NaN 1 0 Median NaN NaN NaN 0 0 Median 9042700 5501000 3541600 9042700 5501000 3541600 0 0 0 12029 2109 12359 31681 49400 49400 1 SLEQNIQLPAALLSR LAAANPAYGRYNPRRSLEQNIQLPAALLSR SLEQNIQLPAALLSRFDLLWLIQDRPDRDN R S L S R F 2 1 1 0 0 2 1 0 0 1 4 0 0 0 1 2 0 0 0 0 0 0 15 0 1651.9257 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;Q9H4N9 B3KUD7 393 407 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 2.6935E-30 151.16 2 2 0.93434 1.3485 37.989 4 Linear 1.1522 1.2407 0.094375 2 0 Median 0.77815 0.64272 1.8489 2 0 Median 115940000 56270000 59672000 83443000 37966000 45477000 32499000 18304000 14195000 12030 560 12360 31682;31683;31684;31685 49401;49402;49403;49404;49405;49406 49402 6 SLESCPGETVVAEDPAGLK AVWKITSEAIGQLHRSLESCPGETVVAEDP CPGETVVAEDPAGLKVPLLLHQKQALAWLL R S L L K V 2 0 0 1 1 0 3 2 0 0 2 1 0 0 2 2 1 0 0 2 0 0 19 0 1957.9303 A0A024R0F1;Q9UNY4 A0A024R0F1 549 567 TTF2 Transcription termination factor 2 yes no 2 2.7335E-08 94.688 2 1 0.71797 0.75464 35.956 3 Median 0.71432 0.73168 4.3703 2 0 Median 1.6577 1.3608 NaN 1 0 Median 39271000 20587000 18684000 30074000 16889000 13185000 9196600 3698100 5498500 12031 44 12361 31686;31687;31688 49407;49408;49409;49410;49411;49412;49413;49414;49415 49413 9 SLESINSR ______________________________ AAKKTKKSLESINSRLQLVMKSGKYVLGYK K S L S R L 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 8 0 904.46141 E5RI99;A0A024R9D3;P62888;E5RJH3;A0A0C4DH44 E5RI99 10 17 RPL30 60S ribosomal protein L30 yes no 2 0.00037935 133.12 2 2 0.79792 0.79474 22.676 4 Median 0.84075 0.9813 7.6696 2 0 Median 0.79792 0.66809 2.3973 2 0 Median 530340000 301930000 228410000 495790000 282990000 212800000 34549000 18938000 15611000 12032 276 12362 31689;31690;31691;31692 49416;49417;49418;49419;49420 49416 5 SLESLDTSLFAK TLEERAQRLFSTKGKSLESLDTSLFAKNPK KGKSLESLDTSLFAKNPKSKGTKRDTERNK K S L A K N 1 0 0 1 0 0 1 0 0 0 3 1 0 1 0 3 1 0 0 0 0 0 12 0 1309.6765 Q53HM6;B3KY12;A8K7V1;A8K566;Q12874;B4DW90 Q53HM6 292 303 SF3A3 Splicing factor 3A subunit 3 yes no 2 0.0056707 50.353 1 1.5597 1.6026 NaN 1 Median 1.5597 1.6026 NaN 1 0 Median NaN NaN NaN 0 0 Median 10676000 3110800 7565000 10676000 3110800 7565000 0 0 0 12033 747 12363 31693 49421 49421 1 SLESLHSFVAAATK LQYAKLLNSSKARLRSLESLHSFVAAATKE RSLESLHSFVAAATKELMWLNEKEEEEVGF R S L T K E 3 0 0 0 0 0 1 0 1 0 2 1 0 1 0 3 1 0 0 1 0 0 14 0 1459.7671 Q15149;E9PMV1 Q15149 751 764 PLEC Plectin yes no 2 0.039826 27.149 1 1.4389 1.4834 NaN 1 Median 1.4389 1.4834 NaN 1 0 Median NaN NaN NaN 0 0 Median 12839000 5562100 7277200 12839000 5562100 7277200 0 0 0 12034 1754 12364 31694 49422 49422 1 SLESNPEQLQAMR VPLLPSDVKLKLYDRSLESNPEQLQAMRHI DRSLESNPEQLQAMRHIVTGTTRPAPYIIF R S L M R H 1 1 1 0 0 2 2 0 0 0 2 0 1 0 1 2 0 0 0 0 0 0 13 0 1501.7195 B7Z700;Q5JR04;Q9HCE1;Q9H8T8 B7Z700 434 446 MOV10 Putative helicase MOV-10 yes no 2 0.0016861 57.785 3 2.3445 2.3597 NaN 1 Median 2.3445 2.3597 NaN 1 0 Median NaN NaN NaN 0 0 Median 12571000 3893500 8677700 12571000 3893500 8677700 0 0 0 12035 1102 12365 31695;31696;31697 49423;49424;49425 49424 845 2 SLETENAGLR QELNDRLAVYIDRVRSLETENAGLRLRITE IDRVRSLETENAGLRLRITESEEVVSREVS R S L L R L 1 1 1 0 0 0 2 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1088.5462 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;W5X314 P02545 51 60 LMNA Prelamin-A/C;Lamin-A/C yes no 2 3.3533E-06 110.22 2 2 1.2085 1.267 8.9421 4 Median 1.1279 1.2945 1.1833 2 0 Median 1.3711 1.1589 10.766 2 0 Median 404660000 182090000 222560000 361380000 165310000 196070000 43272000 16780000 26492000 12036 1440 12366 31698;31699;31700;31701 49426;49427;49428;49429;49430;49431;49432 49426 7 SLETENSALQLQVTER RELNDRLAVYIDKVRSLETENSALQLQVTE LETENSALQLQVTEREEVRGRELTGLKALY R S L E R E 1 1 1 0 0 2 3 0 0 0 3 0 0 0 0 2 2 0 0 1 0 0 16 0 1816.9167 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 52 67 LMNB1 Lamin-B1 yes no 2 1.9287E-08 101.72 2 2 2.01 1.9792 22.993 4 Median 1.461 1.5979 10.384 2 0 Median 2.7701 2.3423 3.943 2 0 Median 114460000 54020000 60439000 105820000 51500000 54323000 8636500 2520400 6116100 12037 1502 12367 31702;31703;31704;31705 49433;49434;49435;49436;49437;49438;49439;49440;49441 49433 9 SLETENSALQLQVTEREEVR RELNDRLAVYIDKVRSLETENSALQLQVTE NSALQLQVTEREEVRGRELTGLKALYETEL R S L V R G 1 2 1 0 0 2 5 0 0 0 3 0 0 0 0 2 2 0 0 2 0 0 20 1 2330.1714 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 52 71 LMNB1 Lamin-B1 yes no 3 4.1085E-05 44.577 1 1 1.4807 1.4242 18.608 2 Median 1.1429 1.2486 NaN 1 0 Median 1.9184 1.6245 NaN 1 0 Median 28208000 11969000 16239000 19147000 8538600 10609000 9060500 3429900 5630600 12038 1502 12368 31706;31707 49442;49443 49443 1 SLEYCSTASIDSENPPDLNK ELASLDCYNHLAEWKSLEYCSTASIDSENP STASIDSENPPDLNKIWSEPFYQETYLPYM K S L N K I 1 0 2 2 1 0 2 0 0 1 2 1 0 0 2 4 1 0 1 0 0 0 20 0 2238.9951 P78527 P78527 3010 3029 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.9858E-18 124.3 2 1 0.68254 0.67446 48.294 3 Plateau 0.65207 0.67513 0.13843 2 0 Median 0.36287 0.29249 NaN 1 0 Median 61554000 35811000 25743000 47864000 26033000 21831000 13691000 9778100 3912600 12039 1665 12369 31708;31709;31710 49444;49445;49446;49447;49448;49449 49448 6 SLFAHDDSVMYLQFVPK RNVKIWGLDFGDCHKSLFAHDDSVMYLQFV FAHDDSVMYLQFVPKSHLFFTAGKDHKIKQ K S L P K S 1 0 0 2 0 1 0 0 1 0 2 1 1 2 1 2 0 0 1 2 0 0 17 0 1995.9764 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 628 644 WDR3 WD repeat-containing protein 3 yes no 3 7.4879E-08 97.417 2 1 1.2331 1.3434 30.382 3 Median 1.2414 1.3627 2.0193 2 0 Median 0.98647 0.8056 NaN 1 0 Median 102810000 45521000 57287000 94744000 41525000 53219000 8064300 3996000 4068300 12040 1827 12370 31711;31712;31713 49450;49451;49452;49453;49454;49455 49454 1687 6 SLFGQLHPPDEGHGD DHTTMNDDARTELYRSLFGQLHPPDEGHGD SLFGQLHPPDEGHGD_______________ R S L G D - 0 0 0 2 0 1 1 3 2 0 2 0 0 1 2 1 0 0 0 0 0 0 15 0 1604.7219 Q9NY61;A0A087WTH8 Q9NY61 546 560 AATF Protein AATF yes no 2;3 0.00013926 51.009 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 263460000 0 0 240030000 0 0 23428000 0 0 12041 2080 12371 31714;31715;31716;31717;31718 49456;49457;49458;49459;49460 49458 5 SLFIGEK QGLNFTSKTAEGHPKSLFIGEKAVLLKTKK KTAEGHPKSLFIGEKAVLLKTKKKGQKKSG K S L E K A 0 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 792.43815 P42696;A2A2V2 P42696 400 406 RBM34 RNA-binding protein 34 yes no 2 0.029647 69.998 2 0.85197 0.93618 33.109 2 Median 0.85197 0.93618 33.109 2 0 Median NaN NaN NaN 0 0 Median 101740000 53464000 48281000 101740000 53464000 48281000 0 0 0 12042 1566 12372 31719;31720 49461;49462 49462 2 SLFILGQVIK GAAGVRLKEGCNINRSLFILGQVIKKLSDG CNINRSLFILGQVIKKLSDGQVGGFINYRD R S L I K K 0 0 0 0 0 1 0 1 0 2 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1116.6907 A0A087X0P0;Q02224;D6RBW0 A0A087X0P0 261 270 CENPE Kinesin-like protein;Centromere-associated protein E yes no 2 0.0041076 61.962 2 2 1.6147 1.565 16.104 4 Median 1.6147 1.7636 12.405 2 0 Median 1.6103 1.4066 10.601 2 0 Median 8698400 3742300 4956100 6358500 2926700 3431800 2339900 815610 1524200 12043 445 12373 31721;31722;31723;31724 49463;49464;49465;49466;49467;49468;49469 49464 7 SLFLGQK TEGTPADGFTVLSTKSLFLGQKLNLIHSEI GFTVLSTKSLFLGQKLNLIHSEISNLAGFE K S L Q K L 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 7 0 791.45414 O75367 O75367 190 196 H2AFY Core histone macro-H2A.1 yes yes 2 0.0098984 113.08 2 2 1.1735 1.3714 13.965 4 Linear 1.1242 1.3541 1.3582 2 0 Median 1.23 1.0654 2.8645 2 0 Median 7138900000 3411400000 3727500000 6815800000 3266200000 3549600000 323110000 145210000 177900000 12044 1401 12374 31725;31726;31727;31728 49470;49471;49472;49473;49474;49475 49470 6 SLFPEGNPAK DLSQAMWKASHALIKSLFPEGNPAKINLKR HALIKSLFPEGNPAKINLKRPPTAGSQFKA K S L A K I 1 0 1 0 0 0 1 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 10 0 1058.5397 E9PDF6;B0I1S9;O43795 E9PDF6 552 561 MYO1B Unconventional myosin-Ib yes no 2 0.013721 58.981 2 1.4717 1.4977 NaN 1 Median 1.4717 1.4977 NaN 1 0 Median NaN NaN NaN 0 0 Median 20507000 5161200 15346000 20507000 5161200 15346000 0 0 0 12045 805 12375 31729;31730 49476;49477;49478 49477 3 SLFPENLQADK DLIELMQSSELPFIKSLFPENLQADKKGRP PFIKSLFPENLQADKKGRPTTAGSKIKKQA K S L D K K 1 0 1 1 0 1 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 11 0 1260.635 Q4KMR3;Q12965;H0YNQ8 Q4KMR3 544 554 MYO1E Unconventional myosin-Ie yes no 2 0.0018568 64.297 1 1.4995 1.5363 NaN 1 Median 1.4995 1.5363 NaN 1 0 Median NaN NaN NaN 0 0 Median 31854000 13523000 18331000 31854000 13523000 18331000 0 0 0 12046 1703 12376 31731 49479;49480 49479 2 SLFSSIGEVESAK IVNYLPQNMTQDELRSLFSSIGEVESAKLI LRSLFSSIGEVESAKLIRDKVAGHSLGYGF R S L A K L 1 0 0 0 0 0 2 1 0 1 1 1 0 1 0 4 0 0 0 1 0 0 13 0 1352.6824 Q15717;M0QZR9 Q15717 38 50 ELAVL1 ELAV-like protein 1 yes no 2 9.1829E-05 93.258 2 2.0254 2.0957 NaN 1 Median 2.0254 2.0957 NaN 1 0 Median NaN NaN NaN 0 0 Median 47242000 8453900 38788000 47242000 8453900 38788000 0 0 0 12047 1764 12377 31732;31733 49481;49482 49481 2 SLFVGHMDYK TRADVDVQPYAFTTKSLFVGHMDYKYLRWQ AFTTKSLFVGHMDYKYLRWQVVDTPGILDH K S L Y K Y 0 0 0 1 0 0 0 1 1 0 1 1 1 1 0 1 0 0 1 1 0 0 10 0 1195.5696 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 202 211 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.00021076 72.643 1 1 1.0957 0.87831 NaN 1 Median NaN NaN NaN 0 0 Median 1.0957 0.87831 NaN 1 0 Median 8342000 3937100 4404900 0 0 0 8342000 3937100 4404900 12048 1183 12378 31734;31735 49483;49484;49485 49483 899 3 SLFVVVGDR RIRILIENGVAERQRSLFVVVGDRGKDQVV VAERQRSLFVVVGDRGKDQVVILHHMLSKA R S L D R G 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 3 0 0 9 0 990.54983 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 24 32 NAT10 N-acetyltransferase 10 no no 2 1.2099E-06 136.75 3 2 1.1225 1.1422 3.2052 4 Median 0.94447 1.1147 3.975 2 0 Median 1.3296 1.1532 1.8747 2 0 Median 1674900000 849590000 825340000 1536300000 788380000 747910000 138640000 61214000 77429000 12049 2023;1687 12379 31736;31737;31738;31739;31740 49486;49487;49488;49489;49490;49491;49492;49493 49490 8 SLGEDVSDSGTSK VVKHVLSELKELSYRSLGEDVSDSGTSKPS YRSLGEDVSDSGTSKPSKPLLFSSASSQNH R S L S K P 0 0 0 2 0 0 1 2 0 0 1 1 0 0 0 4 1 0 0 1 0 0 13 0 1280.5732 B2RWP5;Q96L73;Q96MN8;Q8NB95 B2RWP5 602 614 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.0051753 58.676 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4738600 4738600 0 4738600 4738600 0 0 0 0 12050 898 12380 31741;31742 49494;49495 49495 2 SLGEIPIVESEIK STKEDIQSVMTEIRRSLGEIPIVESEIKKE RRSLGEIPIVESEIKKEAGELKPEEEITVG R S L I K K 0 0 0 0 0 0 3 1 0 3 1 1 0 0 1 2 0 0 0 1 0 0 13 0 1412.7763 P53618 P53618 482 494 COPB1 Coatomer subunit beta yes yes 2 0.00057687 81.865 2 1.8555 1.8567 NaN 1 Median 1.8555 1.8567 NaN 1 0 Median NaN NaN NaN 0 0 Median 20345000 12463000 7881500 20345000 12463000 7881500 0 0 0 12051 1606 12381 31743;31744 49496;49497 49496 1 SLGELGLEHFQAPLVR NWRSHNNLRITRILKSLGELGLEHFQAPLV LGELGLEHFQAPLVRFFLEETLVRRELPGV K S L V R F 1 1 0 0 0 1 2 2 1 0 4 0 0 1 1 1 0 0 0 1 0 0 16 0 1764.9523 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2;B3KMQ6;A0A087X028 Q6PK21 75 90 OGFR Opioid growth factor receptor yes no 3 6.5991E-07 99.566 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12052 469 12382 31745 49498 49498 1 SLGHGLINK GTLQSFSTVHEKFNKSLGHGLINKKRVKRK HEKFNKSLGHGLINKKRVKRKGLQNTMSVR K S L N K K 0 0 1 0 0 0 0 2 1 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 937.53451 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 361 369 WDR36 WD repeat-containing protein 36 yes no 2;3 8.384E-12 183.9 4 2 0.9315 1.009 5.3928 6 Median 0.89141 0.97247 6.6539 4 0 Median 1.2891 1.0259 0.25686 2 0 Median 508010000 257520000 250490000 475850000 243350000 232510000 32160000 14179000 17981000 12053 486 12383 31746;31747;31748;31749;31750;31751 49499;49500;49501;49502;49503;49504;49505;49506;49507;49508;49509 49503 11 SLGHGLINKK GTLQSFSTVHEKFNKSLGHGLINKKRVKRK EKFNKSLGHGLINKKRVKRKGLQNTMSVRL K S L K K R 0 0 1 0 0 0 0 2 1 1 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1065.6295 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 361 370 WDR36 WD repeat-containing protein 36 yes no 2 0.016964 53.775 1 1.2694 1.103 NaN 1 Median NaN NaN NaN 0 0 Median 1.2694 1.103 NaN 1 0 Median 1226800 523370 703420 0 0 0 1226800 523370 703420 12054 486 12384 31752 49510 49510 1 SLGLLVR ELAQQVRAVAQPLGRSLGLLVRDLEGGHGM AVAQPLGRSLGLLVRDLEGGHGMRRIRLQL R S L V R D 0 1 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 1 0 0 7 0 756.48577 Q9NUL7 Q9NUL7 229 235 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 2 0.019725 95.957 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12055 2072 12385 31753 49511 49511 1 SLGLVDR EAENKAAALACKKLKSLGLVDRNNEPLTHA ALACKKLKSLGLVDRNNEPLTHAMYNLASL K S L D R N 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 758.42865 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 286 292 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.029647 69.998 1 1.1203 1.1378 NaN 1 Median 1.1203 1.1378 NaN 1 0 Median NaN NaN NaN 0 0 Median 29184000 14528000 14656000 29184000 14528000 14656000 0 0 0 12056 122 12386 31754 49512 49512 1 SLGNILQAK SDGEVPTAVAPAQEKSLGNILQAKPTSSPA APAQEKSLGNILQAKPTSSPAKGPPQKAGP K S L A K P 1 0 1 0 0 1 0 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 942.54983 E7ETY2;B4DRA2;B4DLB1;Q13428;Q59FZ2 Q13428 571 579 TCOF1 Treacle protein no no 2 0.0050184 75.213 2 1 1.297 1.2108 40.059 2 Median 0.84914 0.91209 NaN 1 0 Median 1.9812 1.6072 NaN 1 0 Median 57911000 37484000 20427000 55095000 36626000 18469000 2815800 858140 1957600 12057 1712;1225 12387 31755;31756;31757 49513;49514;49515;49516 49513 4 SLGPPQGEEDSVPR ECMAPLTALVKHMHRSLGPPQGEEDSVPRD RSLGPPQGEEDSVPRDLPSWMKFLHGKLGN R S L P R D 0 1 0 1 0 1 2 2 0 0 1 0 0 0 3 2 0 0 0 1 0 0 14 0 1466.7001 P78527 P78527 2107 2120 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.652E-09 115.65 2 2 0.52569 0.60963 52.543 4 Linear 0.45665 0.51446 34.07 2 0 Median 0.26354 0.22132 2.557 2 0 Median 258370000 181000000 77373000 217410000 149250000 68166000 40956000 31749000 9207300 12058 1665 12388 31758;31759;31760;31761 49517;49518;49519;49520;49521;49522;49523;49524;49525 49518 9 SLGSTAGTDITVNSVILLPK KIWNMKTTECSNTFKSLGSTAGTDITVNSV AGTDITVNSVILLPKNPEHFVVCNRSNTVV K S L P K N 1 0 1 1 0 0 0 2 0 2 3 1 0 0 1 3 3 0 0 2 0 0 20 0 1985.1045 A0MNN4;Q2TAY7 A0MNN4 389 408 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 2 1.9504E-06 70.622 2 1.2847 1.3056 0.84748 2 Median 1.2847 1.3056 0.84748 2 0 Median NaN NaN NaN 0 0 Median 26407000 10912000 15495000 26407000 10912000 15495000 0 0 0 12059 642 12389 31762;31763 49526;49527;49528 49527 3 SLGSVQAPSYGAR ______________________________ YRSLGSVQAPSYGARPVSSAASVYAGAGGS R S L A R P 2 1 0 0 0 1 0 2 0 0 1 0 0 0 1 3 0 0 1 1 0 0 13 0 1291.6521 F8VZY9;B2RA03;A0A024RAY2;P05783 F8VZY9 15 27 KRT18 Keratin, type I cytoskeletal 18 yes no 2 2.7945E-31 175.15 2 2 1.4003 1.4154 3.623 4 Median 1.162 1.3684 2.8774 2 0 Median 1.6748 1.4454 1.0706 2 0 Median 1160900000 539310000 621620000 1089700000 513080000 576640000 71212000 26229000 44984000 12060 316 12390 31764;31765;31766;31767 49529;49530;49531;49532;49533;49534;49535;49536;49537;49538;49539;49540 49533 12 SLGTADVHFER GTLKKAAVHYDRSGRSLGTADVHFERKADA RSGRSLGTADVHFERKADALKAMKQYNGVP R S L E R K 1 1 0 1 0 0 1 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1230.5993 E9PB61;Q86V81 E9PB61 152 162 ALYREF THO complex subunit 4 yes no 2;3 4.6685E-08 121.83 5 4 1.1786 1.4009 56.16 8 Linear 1.0259 1.134 10.019 4 0 Median 0.47055 0.39111 3.5253 4 0 Median 340750000 168540000 172210000 267490000 118250000 149240000 73253000 50286000 22967000 12061 1229 12391 31768;31769;31770;31771;31772;31773;31774;31775;31776 49541;49542;49543;49544;49545;49546;49547;49548;49549;49550;49551;49552;49553;49554;49555 49547 15 SLGTIQQCCDAIDHLCR VIYMESLALAHADEKSLGTIQQCCDAIDHL GTIQQCCDAIDHLCRIIEKKHVSLNKAKKR K S L C R I 1 1 0 2 3 2 0 1 1 2 2 0 0 0 0 1 1 0 0 0 0 0 17 0 2045.9081 P78527 P78527 1120 1136 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 1.3326E-10 111.92 2 2 1.1934 1.2925 76.539 3 Plateau 1.1139 1.1818 12.665 2 0 Median 0.37564 0.31678 NaN 1 0 Median 65631000 37620000 28011000 49677000 24666000 25011000 15954000 12955000 2999500 12062 1665 12392 31777;31778;31779;31780 49556;49557;49558;49559;49560;49561 49557 6 SLGVDMDDKDDAHYAVQAR TAKKVQRTVLEKEMRSLGVDMDDKDDAHYA DMDDKDDAHYAVQARRSRSITRKRKREDSA R S L A R R 3 1 0 5 0 1 0 1 1 0 1 1 1 0 0 1 0 0 1 2 0 0 19 1 2104.9484 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 524 542 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3;4 5.8027E-06 60.062 2 2 1.637 1.635 14.641 4 Median 1.6013 1.849 3.3481 2 0 Median 1.6897 1.442 3.7155 2 0 Median 67137000 28929000 38207000 61652000 27287000 34365000 5484500 1642700 3841900 12063 1183 12393;12394 31781;31782;31783;31784 49562;49563;49564;49565;49566 49562 900 5 SLGYAYVNFQQPADAER PILSIRVCRDMITRRSLGYAYVNFQQPADA GYAYVNFQQPADAERALDTMNFDVIKGKPV R S L E R A 3 1 1 1 0 2 1 1 0 0 1 0 0 1 1 1 0 0 2 1 0 0 17 0 1927.9064 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;H0YBN4;E5RGH3;E5RJB9;E5RH24;E5RHG7;B1ANR0;Q6IQ30;Q13310;B1ANR1 A0A087WTT1 26 42 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 1.4812E-45 173.19 3 2 1.4591 1.4137 39.211 4 Median 1.7767 2.0081 3.6521 2 0 Median 1.2364 1.0192 0.27954 2 0 Median 182760000 66779000 115980000 153160000 53286000 99876000 29602000 13494000 16108000 12064 273;818 12395 31785;31786;31787;31788;31789 49567;49568;49569;49570;49571;49572;49573;49574;49575;49576 49572 10 SLHDALCVIR FIRGGNKMIIEEAKRSLHDALCVIRNLIRD EEAKRSLHDALCVIRNLIRDNRVVYGGGAA R S L I R N 1 1 0 1 1 0 0 0 1 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1182.6179 B4DE30;E7ENZ3;B4DYC8;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;Q96GI1;B4DX08;Q9HB74 B4DE30 326 335 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 3 0.038539 35.541 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3280700 0 3280700 3280700 0 3280700 0 0 0 12065 960 12396 31790 49577 49577 1 SLHPIHQGITELSR QSWRRASMKETNRRKSLHPIHQGITELSRS KSLHPIHQGITELSRSISVDLAESKRLGCL K S L S R S 0 1 0 0 0 1 1 1 2 2 2 0 0 0 1 2 1 0 0 0 0 0 14 0 1586.8529 Q4G1A1;A8K3X3;Q9H410;Q5JW53;Q5JW54;Q5JW57 Q4G1A1 93 106 DSN1 Kinetochore-associated protein DSN1 homolog yes no 3 0.00049382 52.5 1 0.99847 0.86676 NaN 1 Median NaN NaN NaN 0 0 Median 0.99847 0.86676 NaN 1 0 Median 2372800 1200200 1172600 0 0 0 2372800 1200200 1172600 12066 727 12397 31791 49578 49578 1 SLHSAGPPLLAVTAAPPAQPLAK LNIPHPSVISSPLLKSLHSAGPPLLAVTAA LLAVTAAPPAQPLAKKKGVKRKADTTTPTP K S L A K K 6 0 0 0 0 1 0 1 1 0 4 1 0 0 5 2 1 0 0 1 0 0 23 0 2206.2474 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7;E9PIQ3;H0Y799;A0A140T9X8 A0A024RCR5 253 275 BRD2 Bromodomain-containing protein 2 yes no 3 4.0936E-08 53.585 2 2 0.87186 0.80073 25.179 4 Median 0.63804 0.63959 5.7165 2 0 Median 1.2256 0.98441 3.147 2 0 Median 75120000 43970000 31150000 53751000 34632000 19119000 21369000 9337900 12031000 12067 367 12398 31792;31793;31794;31795 49579;49580;49581;49582;49583;49584;49585;49586 49582 8 SLHSATTIGNK TWNKPSLSGVAPLPRSLHSATTIGNKMYVF PLPRSLHSATTIGNKMYVFGGWVPLVMDDV R S L N K M 1 0 1 0 0 0 0 1 1 1 1 1 0 0 0 2 2 0 0 0 0 0 11 0 1127.5935 A6NEM2;P51610;Q05C05 A6NEM2 256 266 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2;3 2.9615E-10 133.32 3 2 0.99774 0.89692 35.635 4 Median 0.64072 0.65182 5.3937 2 0 Median 1.5174 1.2051 2.016 2 0 Median 42678000 26276000 16402000 36625000 23706000 12919000 6053500 2570000 3483500 12068 680 12399 31796;31797;31798;31799;31800 49587;49588;49589;49590;49591;49592;49593 49590 7 SLHSLVK SQEDLTFLWDMFGEKSLHSLVKHFQERRLA LWDMFGEKSLHSLVKHFQERRLALRRPEIL K S L V K H 0 0 0 0 0 0 0 0 1 0 2 1 0 0 0 2 0 0 0 1 0 0 7 0 782.46504 U5GXS2;S4R337;B3KQ45;Q5T2T1 U5GXS2 46 52 MPP7 MAGUK p55 subfamily member 7 yes no 2 0.023804 90.706 1 1.0554 1.065 NaN 1 Median 1.0554 1.065 NaN 1 0 Median NaN NaN NaN 0 0 Median 7976400 4344100 3632300 7976400 4344100 3632300 0 0 0 12069 926 12400 31801 49594 49594 1 SLHSVSEER KKKLTKKTESQSQKRSLHSVSEERTDEMTH SQSQKRSLHSVSEERTDEMTHKETNEQEER R S L E R T 0 1 0 0 0 0 2 0 1 0 1 0 0 0 0 3 0 0 0 1 0 0 9 0 1042.5043 Q8WYP5;B3KRD0;H7C4S1 Q8WYP5 2060 2068 AHCTF1 Protein ELYS yes no 2;3 1.8776E-05 119.27 2 1.0458 1.0874 4.8069 2 Median 1.0458 1.0874 4.8069 2 0 Median NaN NaN NaN 0 0 Median 34629000 16457000 18172000 34629000 16457000 18172000 0 0 0 12070 1945 12401 31802;31803 49595;49596;49597 49596 3 SLICSISNEVPEHPCVSPVSNHVYER ______________________________ EHPCVSPVSNHVYERRLIEKYIAENGTDPI M S L E R R 0 1 2 0 2 0 3 0 2 2 1 0 0 0 3 5 0 0 1 4 0 0 26 0 3008.412 Q9UMS4;F5GY56 Q9UMS4 2 27 PRPF19 Pre-mRNA-processing factor 19 yes no 3 3.124E-14 84.318 1 2 0.94728 0.83914 9.3253 3 Median 0.89979 0.97811 NaN 1 0 Median 0.96904 0.83269 1.0914 2 0 Median 117330000 60920000 56405000 50581000 27010000 23571000 66744000 33910000 32834000 12071 2114 12402 31804;31805;31806 49598;49599;49600;49601;49602;49603 49601 6 SLIGVEYKPVSATGAEDK DIAVQELLQLKAQYKSLIGVEYKPVSATGA GVEYKPVSATGAEDKDKKKKEKENKSEKQN K S L D K D 2 0 0 1 0 0 2 2 0 1 1 2 0 0 1 2 1 0 1 2 0 0 18 1 1862.9626 P07814;V9GYZ6;Q3KQZ8;B4DKX5 P07814 944 961 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 0.0054158 33.248 2 1 2.202 2.5668 54.191 3 Plateau 2.0158 2.3626 11.722 2 0 Median 1.0825 0.93442 NaN 1 0 Median 75840000 28785000 47055000 70916000 26437000 44479000 4924000 2347600 2576400 12072 1454 12403 31807;31808;31809 49604;49605;49606;49607 49607 2 SLIINTFYSNK ______________________________ ______________________________ M S L N K E 0 0 2 0 0 0 0 0 0 2 1 1 0 1 0 2 1 0 1 0 0 0 11 0 1298.6871 Q58FF6 Q58FF6 2 12 HSP90AB4P Putative heat shock protein HSP 90-beta 4 yes yes 2 1.7174E-12 143.03 2 2 1.495 1.4225 44.371 4 Median 1.9306 2.1178 14.81 2 0 Median 1.2551 1.0008 8.2534 2 0 Median 135890000 47376000 88511000 127570000 43796000 83775000 8315600 3580300 4735300 12073 1799 12404 31810;31811;31812;31813 49608;49609;49610;49611;49612;49613;49614;49615 49609 8 SLIPAEGTLSK SFFKEYGQIESVRFRSLIPAEGTLSKKLAA VRFRSLIPAEGTLSKKLAAIKRKIHPDQKN R S L S K K 1 0 0 0 0 0 1 1 0 1 2 1 0 0 1 2 1 0 0 0 0 0 11 0 1114.6234 P42696 P42696 218 228 RBM34 RNA-binding protein 34 yes yes 2 0.0018904 64.04 2 2 1.0129 0.952 18.743 4 Median 0.99697 1.1204 4.7422 2 0 Median 1.0129 0.81442 3.7883 2 0 Median 162520000 76350000 86167000 142580000 66528000 76051000 19938000 9822500 10116000 12074 1566 12405 31814;31815;31816;31817 49616;49617;49618;49619;49620;49621;49622 49619 7 SLIPDIK TQKKPSISITTESLKSLIPDIKPLAGQEAV SITTESLKSLIPDIKPLAGQEAVVDLHADD K S L I K P 0 0 0 1 0 0 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 0 7 0 784.46945 G3V3B0;Q69YJ6;S4R3H4;E7EQT4;Q9UKV3;B4DQZ7 G3V3B0 114 120 ACIN1;DKFZp667N107 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.037563 60.788 1 1.2523 1.2738 NaN 1 Median 1.2523 1.2738 NaN 1 0 Median NaN NaN NaN 0 0 Median 13950000 6292100 7657900 13950000 6292100 7657900 0 0 0 12075 1220 12406 31818 49623 49623 1 SLIVDQVQK ACVSPGVTVVISPLRSLIVDQVQKLTSLDI VISPLRSLIVDQVQKLTSLDIPATYLTGDK R S L Q K L 0 0 0 1 0 2 0 0 0 1 1 1 0 0 0 1 0 0 0 2 0 0 9 0 1028.5866 B2RAN0;P54132;H0YNU5;B7ZKN7;B7Z2X2 B2RAN0 718 726 BLM Bloom syndrome protein yes no 2 0.010479 59.245 1 1.0091 1.0255 NaN 1 Median 1.0091 1.0255 NaN 1 0 Median NaN NaN NaN 0 0 Median 13344000 7409100 5934700 13344000 7409100 5934700 0 0 0 12076 873 12407 31819 49624;49625 49624 2 SLIVEGK EDEDDEEEEEEEKEKSLIVEGKREKKKVER EEEEEKEKSLIVEGKREKKKVERLTMQVSS K S L G K R 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 7 0 744.43815 B4DNW3;P35659;B4DFG0;D6R9L5 P35659 51 57 DEK Protein DEK no no 2 0.041494 58.981 2 0.84065 0.70539 0.78331 2 Median NaN NaN NaN 0 0 Median 0.84065 0.70539 0.78331 2 0 Median 102480000 56636000 45846000 0 0 0 102480000 56636000 45846000 12077 1546;1018 12408 31820;31821 49626;49627 49626 2 SLIYKPLDGEWGTNPR EELGTSVPLTDGECRSLIYKPLDGEWGTNP LIYKPLDGEWGTNPRDEECERIVAGINQLM R S L P R D 0 1 1 1 0 0 1 2 0 1 2 1 0 0 2 1 1 1 1 0 0 0 16 1 1844.9421 Q8WWQ0;Q9NWP3 Q8WWQ0 1146 1161 PHIP PH-interacting protein yes no 3 0.012789 24.918 1 1.4923 1.2719 NaN 1 Median NaN NaN NaN 0 0 Median 1.4923 1.2719 NaN 1 0 Median 3019400 1418500 1600900 0 0 0 3019400 1418500 1600900 12078 1942 12409 31822 49628 49628 1 SLLALGNVINALADSK GAKGTRFVEGTNINRSLLALGNVINALADS LLALGNVINALADSKRKNQHIPYRNSKLTR R S L S K R 3 0 2 1 0 0 0 1 0 1 4 1 0 0 0 2 0 0 0 1 0 0 16 0 1597.9039 B2R6H3;Q8NI77;Q4G194 B2R6H3 284 299 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 1.8884E-06 94.122 2 0.75987 0.76299 7.8026 2 Median 0.75987 0.76299 7.8026 2 0 Median NaN NaN NaN 0 0 Median 18330000 10475000 7854800 18330000 10475000 7854800 0 0 0 12079 842 12410 31823;31824 49629;49630;49631;49632 49632 4 SLLAWQSLR QALVTLWHQLHVDMKSLLAWQSLRRDVQLI LHVDMKSLLAWQSLRRDVQLIRSWSLATFR K S L L R R 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 2 0 1 0 0 0 0 9 0 1072.6029 Q15149 Q15149 1029 1037 PLEC Plectin yes yes 2 0.0056247 67.897 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1024700 0 1024700 0 0 0 1024700 0 1024700 12080 1754 12411 31825;31826;31827 49633;49634;49635 49633 3 SLLCHLPR EADLLFSFGFEEELKSLLCHLPRIYQAFLM GFEEELKSLLCHLPRIYQAFLMSATFNEDV K S L P R I 0 1 0 0 1 0 0 0 1 0 3 0 0 0 1 1 0 0 0 0 0 0 8 0 994.53822 Q9NY93;Q53HB9;H7C3E9;G3V0G3 Q9NY93 182 189 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.020574 65.038 1 2 1.3549 1.1653 14.312 2 Median NaN NaN NaN 0 0 Median 1.3549 1.1653 14.312 2 0 Median 27111000 3493100 23618000 19248000 0 19248000 7863000 3493100 4369900 12081 2081 12412 31828;31829;31830 49636;49637;49638;49639 49636 4 SLLDGNIDSSQYEDSLR VDVEDYYPAFLDMVRSLLDGNIDSSQYEDS LDGNIDSSQYEDSLREMFTIHAYIAFTMDK R S L L R E 0 1 1 3 0 1 1 1 0 1 3 0 0 0 0 4 0 0 1 0 0 0 17 0 1910.8858 Q96ST3;B3KQE3 Q96ST3 968 984 SIN3A Paired amphipathic helix protein Sin3a yes no 2 2.4721E-07 97.86 3 0.61999 0.62204 NaN 1 Median 0.61999 0.62204 NaN 1 0 Median NaN NaN NaN 0 0 Median 17151000 12681000 4469700 17151000 12681000 4469700 0 0 0 12082 1990 12413 31831;31832;31833 49640;49641;49642 49641 3 SLLEGEGSSGGGGR LDIKIRLENEIQTYRSLLEGEGSSGGGGRG RSLLEGEGSSGGGGRGGGSFGGGYGGGSSG R S L G R G 0 1 0 0 0 0 2 6 0 0 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1261.5899 CON__P13645;P13645 CON__P13645 451 464 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.9932E-42 163.12 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 710050000 710050000 0 552630000 552630000 0 157420000 157420000 0 + 12083 1161 12414 31834;31835;31836;31837 49643;49644;49645;49646 49644 4 SLLELHK DNDFVFVVLELCRRRSLLELHKRRKALTEP VLELCRRRSLLELHKRRKALTEPEARYYLR R S L H K R 0 0 0 0 0 0 1 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 838.49125 P53350;B2R841;B4E083;Q58A51 P53350 137 143 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 0.028306 72.138 1 1.3539 1.5308 NaN 1 Median 1.3539 1.5308 NaN 1 0 Median NaN NaN NaN 0 0 Median 131930000 56138000 75787000 131930000 56138000 75787000 0 0 0 12084 1604 12415 31838 49647 49647 1 SLLESTYQR NNGATGGQLNTQNSRSLLESTYQRKAEQLM NTQNSRSLLESTYQRKAEQLMSDENCFKLM R S L Q R K 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 1 0 0 0 9 0 1095.556 Q96ST3;B3KQE3 Q96ST3 1044 1052 SIN3A Paired amphipathic helix protein Sin3a yes no 2 0.025003 48.036 1 1.5818 1.7331 NaN 1 Median 1.5818 1.7331 NaN 1 0 Median NaN NaN NaN 0 0 Median 31323000 13264000 18059000 31323000 13264000 18059000 0 0 0 12085 1990 12416 31839 49648 49648 1 SLLFVNTLER LLLYALLKLSLIRGKSLLFVNTLERSYRLR LIRGKSLLFVNTLERSYRLRLFLEQFSIPT K S L E R S 0 1 1 0 0 0 1 0 0 0 3 0 0 1 0 1 1 0 0 1 0 0 10 0 1190.6659 Q9NY93;Q53HB9;H7C3E9;G3V0G3 Q9NY93 261 270 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.016555 56.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18148000 0 18148000 18148000 0 18148000 0 0 0 12086 2081 12417 31840 49649 49649 1 SLLGIDTEDAIQGR EVARLQLQGLDLSSRSLLGIDTEDAIQGRN RSLLGIDTEDAIQGRNESCDISKEHTSETT R S L G R N 1 1 0 2 0 1 1 2 0 2 2 0 0 0 0 1 1 0 0 0 0 0 14 0 1486.7627 P49454 P49454 1750 1763 CENPF Centromere protein F yes yes 2 2.0603E-05 112.13 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14862000 14862000 0 14862000 14862000 0 0 0 0 12087 1581 12418 31841 49650;49651 49651 2 SLLGMLSDLQVYK ERERSGEAVDRSLLRSLLGMLSDLQVYKDS LRSLLGMLSDLQVYKDSFELKFLEETNCLY R S L Y K D 0 0 0 1 0 1 0 1 0 0 4 1 1 0 0 2 0 0 1 1 0 0 13 0 1465.7851 Q13619;A0A0A0MR50;B2RBV7 Q13619 216 228 CUL4A Cullin-4A yes no 2 4.85E-19 141.95 6 3 0.66379 0.5153 41.092 3 Median 0.9815 1.021 NaN 1 0 Median 0.64016 0.50182 3.748 2 0 Median 48695000 22428000 26267000 43495000 19428000 24067000 5199800 3000800 2199000 12088 1718 12419 31842;31843;31844;31845;31846;31847;31848;31849;31850 49652;49653;49654;49655;49656;49657;49658;49659;49660;49661 49655 1553 10 SLLGPYLVFMASTINGYEGTGR VVIDEAAAIPLPLVKSLLGPYLVFMASTIN VFMASTINGYEGTGRSLSLKLIQQLRQQSA K S L G R S 1 1 1 0 0 0 1 4 0 1 3 0 1 1 1 2 2 0 2 1 0 0 22 0 2345.1726 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 400 421 NAT10 N-acetyltransferase 10 no no 2 6.1786E-10 79.022 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30111000 9642700 20468000 30111000 9642700 20468000 0 0 0 12089 2023;1687 12420 31851;31852;31853;31854 49662;49663;49664;49665;49666 49665 1505 5 SLLIDFFR AGDDFDVTEDYRRLKSLLIDFFRGPTVSNI EDYRRLKSLLIDFFRGPTVSNIRLAGLEYV K S L F R G 0 1 0 1 0 0 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1009.5597 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 161 168 RPF2 Ribosome production factor 2 homolog yes no 2 0.0087497 77.282 2 2 0.97502 0.93665 9.6258 4 Median 0.91217 0.99475 9.8058 2 0 Median 1.0761 0.89287 8.0652 2 0 Median 135870000 66001000 69866000 104690000 51416000 53272000 31179000 14585000 16594000 12090 773 12421 31855;31856;31857;31858 49667;49668;49669;49670;49671;49672;49673 49668 7 SLLINAVEASCIR ATIHALHVLESGGFRSLLINAVEASCIRTR FRSLLINAVEASCIRTRELQSMADQEQVSP R S L I R T 2 1 1 0 1 0 1 0 0 2 2 0 0 0 0 2 0 0 0 1 0 0 13 0 1444.7708 Q2TU78;E7D7X9;A0A024R8U9;P32322;Q8TBX0;J3QKT4;E2QRB3;E7D7Y0;A0A1B2JLU7;B7Z8T1;B3KMB7;A0A087WTV6;A0A024R3Q9;Q4W8W1;A0A087WZR9;A0A0S2Z5U6;Q96C36;J3KR12;B4DQK8 Q2TU78 132 144 PIG45;PYCR1;PYCR2;P5CR2 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase 2 no no 2 0.00011891 89.548 2 2 1.4044 1.487 74.111 4 Linear 1.0926 1.1187 2.6184 2 0 Median 0.36407 0.31242 14.151 2 0 Median 38316000 19575000 18741000 30954000 14884000 16070000 7361600 4690500 2671100 12091 259;137 12422 31859;31860;31861;31862 49674;49675;49676;49677;49678;49679;49680 49678 7 SLLIPYLDNLVK HAAAALINFTEDCPKSLLIPYLDNLVKHLH CPKSLLIPYLDNLVKHLHSIMVLKLQELIQ K S L V K H 0 0 1 1 0 0 0 0 0 1 4 1 0 0 1 1 0 0 1 1 0 0 12 0 1386.8123 A0A024RDY0;H0Y8C6;O00410;B4E0R6;B3KWG6 A0A024RDY0 476 487 RANBP5;IPO5 Importin-5 yes no 2 0.013411 44.318 1 1.643 1.7184 NaN 1 Median 1.643 1.7184 NaN 1 0 Median NaN NaN NaN 0 0 Median 3953600 1920500 2033100 3953600 1920500 2033100 0 0 0 12092 394 12423 31863 49681;49682 49682 2 SLLNEIESIYDER GINFKQNDTKVLRSKSLLNEIESIYDERQE SKSLLNEIESIYDERQEQATEENAGVPVGP K S L E R Q 0 1 1 1 0 0 3 0 0 2 2 0 0 0 0 2 0 0 1 0 0 0 13 0 1579.773 Q96ST3 Q96ST3 748 760 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 8.0593E-05 94.191 2 1 0.78858 0.76922 3.9078 3 Plateau 0.75178 0.76922 3.6943 2 0 Median 0.88081 0.73145 NaN 1 0 Median 27973000 15230000 12742000 22096000 13175000 8921600 5876400 2055600 3820900 12093 1990 12424 31864;31865;31866 49683;49684;49685;49686;49687;49688 49687 5 SLLNLLSSQEEDFNSK SVTQRTAFQIRQFQRSLLNLLSSQEEDFNS LLNLLSSQEEDFNSKEALLLVTVLTSLSKL R S L S K E 0 0 2 1 0 1 2 0 0 0 4 1 0 1 0 4 0 0 0 0 0 0 16 0 1822.8949 B7ZMF2;Q9NVI1;H3BP78;F8W7R3;B3KNW8 B7ZMF2 965 980 FANCI Fanconi anemia group I protein yes no 2 2.7019E-05 85.522 2 2 0.90832 0.85688 13.331 4 Median 0.90832 0.92747 3.4411 2 0 Median 0.92101 0.75554 10.047 2 0 Median 23982000 11646000 12336000 18798000 9044600 9753300 5183800 2601200 2582500 12094 1116 12425 31867;31868;31869;31870 49689;49690;49691;49692 49690 4 SLLPDFLQTPK KNAPAGQETQRGGSKSLLPDFLQTPKEVVC GGSKSLLPDFLQTPKEVVCTTQNTPTVKKS K S L P K E 0 0 0 1 0 1 0 0 0 0 3 1 0 1 2 1 1 0 0 0 0 0 11 0 1257.6969 B2RAN0;P54132;H0YNU5;Q3B7X0;H0YLV8 B2RAN0 106 116 BLM Bloom syndrome protein yes no 2 0.0018904 64.04 2 2 1.0409 0.91394 48.953 4 Median 0.61027 0.61065 1.3188 2 0 Median 1.7502 1.4217 6.7769 2 0 Median 22116000 11610000 10505000 17759000 9936800 7822600 4356300 1673600 2682700 12095 873 12426 31871;31872;31873;31874 49693;49694;49695;49696;49697;49698 49694 6 SLLPLSTSLDHR PKEKPETLIKKRKARSLLPLSTSLDHRSKE KARSLLPLSTSLDHRSKEELHQDCLVLATA R S L H R S 0 1 0 1 0 0 0 0 1 0 4 0 0 0 1 3 1 0 0 0 0 0 12 0 1337.7303 B7ZLC9;Q8TEQ6 B7ZLC9 846 857 GEMIN5 Gem-associated protein 5 yes no 3 0.026613 26.659 1 1.4632 1.4518 NaN 1 Median 1.4632 1.4518 NaN 1 0 Median NaN NaN NaN 0 0 Median 15939000 5255600 10683000 15939000 5255600 10683000 0 0 0 12096 1114 12427 31875 49699;49700 49700 2 SLLPVKPVEIEIETPEQAK EPVLGDVRESTAFSRSLLPVKPVEIEIETP VKPVEIEIETPEQAKTRERSEKIKLEFETY R S L A K T 1 0 0 0 0 1 4 0 0 2 2 2 0 0 3 1 1 0 0 2 0 0 19 1 2119.1776 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPI9;D2CPJ0;D2CPK1;E7EUB5 A0A024R2M8 156 174 XPC DNA repair protein complementing XP-C cells yes no 3 1.8891E-30 112.56 2 2 0.78241 0.78134 2.9241 4 Median 0.65423 0.7635 4.5036 2 0 Median 0.91975 0.78134 0.16815 2 0 Median 107400000 61954000 45450000 76019000 46325000 29694000 31385000 15630000 15756000 12097 118 12428 31876;31877;31878;31879 49701;49702;49703;49704;49705;49706;49707;49708 49706 8 SLLQALNEVK KLQGEFQLRLRQLEKSLLQALNEVKGRILD RQLEKSLLQALNEVKGRILDDDTIITTLEN K S L V K G 1 0 1 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1113.6394 Q14204 Q14204 3748 3757 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.03595 48.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12098 1729 12429 31880 49709 49709 1 SLLQQLENVTK VAIFTLINEINKKGKSLLQQLENVTKERQM KKGKSLLQQLENVTKERQMKLLQQQNDITG K S L T K E 0 0 1 0 0 2 1 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 11 0 1271.7085 H0Y612;A0A024R0F6;Q9UPN9 H0Y612 116 126 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 2 0.00026127 90.15 2 1 1.684 1.7027 0.799 2 Median 1.684 1.7027 0.799 2 0 Median NaN NaN NaN 0 0 Median 17180000 6992900 10187000 17180000 6992900 10187000 0 0 0 12099 45 12430 31881;31882;31883 49710;49711;49712;49713 49710 4 SLLSAEEAAK LSKVHFTAERSSYYKSLLSAEEAAKQKKEK SSYYKSLLSAEEAAKQKKEKVWAHYEEQPV K S L A K Q 3 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 10 0 1017.5342 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299 A0A140VK49 642 651 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.00126 74.464 2 1.5845 1.7472 6.7265 2 Median 1.5845 1.7472 6.7265 2 0 Median NaN NaN NaN 0 0 Median 126920000 49110000 77811000 126920000 49110000 77811000 0 0 0 12100 618 12431 31884;31885 49714;49715;49716 49715 3 SLLVIPNTLAVNAAQDSTDLVAK SMGSREQLAIAEFARSLLVIPNTLAVNAAQ LAVNAAQDSTDLVAKLRAFHNEAQVNPERK R S L A K L 4 0 2 2 0 1 0 0 0 1 4 1 0 0 1 2 2 0 0 3 0 0 23 0 2352.29 P17987;F5H282;E7EQR6 P17987 444 466 TCP1 T-complex protein 1 subunit alpha yes no 2 9.7008E-08 56.29 1 2.2097 2.1938 NaN 1 Median 2.2097 2.1938 NaN 1 0 Median NaN NaN NaN 0 0 Median 6091600 1883100 4208600 6091600 1883100 4208600 0 0 0 12101 1496 12432 31886 49717 49717 1 SLLVQTK GCVVGTKKRVLTLRKSLLVQTKRRALEKID KRVLTLRKSLLVQTKRRALEKIDLKFIDTT K S L T K R 0 0 0 0 0 1 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 7 0 787.48035 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;B3KS36 P39023 350 356 RPL3;rpl3 60S ribosomal protein L3 no no 2 0.03108 69.176 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 450260000 0 450260000 450260000 0 450260000 0 0 0 12102 1554;936 12433 31887;31888 49718;49719;49720 49720 3 SLLYVGNR AWKRISVIKSVFSSRSLLYVGNRQASIIEY KSVFSSRSLLYVGNRQASIIEYLPTLRNIC R S L N R Q 0 1 1 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 8 0 920.50797 Q96QE3 Q96QE3 1783 1790 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 2 0.053457 53.554 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12103 1984 12434 31889 49721 49721 1 SLMSADNVR HESVQWCYDNFINYRSLMSADNVRQQLSRI NFINYRSLMSADNVRQQLSRIMDRFNLPRR R S L V R Q 1 1 1 1 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 9 0 991.47568 O43143;B4E0S6 O43143 653 661 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.014518 52.482 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12104 1379 12435 31890 49722 49722 1046 1 SLNDLIEER NDGSLCLAMEYGGEKSLNDLIEERYKASQD EYGGEKSLNDLIEERYKASQDPFPAAIILK K S L E R Y 0 1 1 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1087.551 V9HWH0;Q96KB5;E5RFX4 V9HWH0 122 130 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 2 0.0055262 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12105 1975 12436 31891 49723 49723 1 SLNGAVPLGSNAR FQHVAAPYIAKAGEKSLNGAVPLGSNAREE EKSLNGAVPLGSNAREESSIHCKRCLFMPK K S L A R E 2 1 2 0 0 0 0 2 0 0 2 0 0 0 1 2 0 0 0 1 0 0 13 0 1254.668 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 204 216 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 8.9502E-06 101.39 1 0.65357 0.661 NaN 1 Median 0.65357 0.661 NaN 1 0 Median NaN NaN NaN 0 0 Median 19925000 10051000 9874200 19925000 10051000 9874200 0 0 0 12106 878 12437 31892 49724;49725 49725 2 SLNLTFATPLQPQSVQRPGLAR SQEPQGNADASSLTRSLNLTFATPLQPQSV TPLQPQSVQRPGLARRPPARRAVDVGAFLR R S L A R R 2 2 1 0 0 3 0 1 0 0 4 0 0 1 3 2 2 0 0 1 0 0 22 1 2393.3179 H3BTR4;B3KPB2;Q96BT3;H3BUW2;B4DMP9 H3BTR4 188 209 CENPT Centromere protein T yes no 3 3.1563E-08 65.454 2 1.3474 1.1779 9.1123 2 Median NaN NaN NaN 0 0 Median 1.3474 1.1779 9.1123 2 0 Median 22877000 8883300 13994000 0 0 0 22877000 8883300 13994000 12107 920 12438 31893;31894 49726;49727 49726 2 SLNNQFASFIDK PEIQKVKSREREQIKSLNNQFASFIDKVRF QIKSLNNQFASFIDKVRFLEQQNQVLQTKW K S L D K V 1 0 2 1 0 1 0 0 0 1 1 1 0 2 0 2 0 0 0 0 0 0 12 0 1382.683 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 186 197 KRT1 Keratin, type II cytoskeletal 1 no no 2 6.1535E-09 116.55 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2242200000 2242200000 0 1688600000 1688600000 0 553570000 553570000 0 + 12108 1308;1309 12439 31895;31896;31897;31898 49728;49729;49730;49731;49732 49732 5 SLNPPLTIVR QFVTGSPRLPVGGFRSLNPPLTIVRKTFES VGGFRSLNPPLTIVRKTFESTENPDDFLPS R S L V R K 0 1 1 0 0 0 0 0 0 1 2 0 0 0 2 1 1 0 0 1 0 0 10 0 1108.6604 Q14669 Q14669 1931 1940 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.043632 48.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5338500 0 5338500 5338500 0 5338500 0 0 0 12109 1736 12440 31899 49733 49733 1 SLNSDISYFGVGGK ESDHSGYVRPVPVPRSLNSDISYFGVGGKQ RSLNSDISYFGVGGKQAVFFVGQSARMISK R S L G K Q 0 0 1 1 0 0 0 3 0 1 1 1 0 1 0 3 0 0 1 1 0 0 14 0 1442.7042 A6NHR9 A6NHR9 227 240 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 5.7533E-05 91.937 1 0.77238 0.7803 NaN 1 Median 0.77238 0.7803 NaN 1 0 Median NaN NaN NaN 0 0 Median 28587000 14728000 13859000 28587000 14728000 13859000 0 0 0 12110 684 12441 31900 49734 49734 1 SLNSIEFR LVFSRDFGLLVFVRKSLNSIEFRECREEIL LLVFVRKSLNSIEFRECREEILKFLCIFLE K S L F R E 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 2 0 0 0 0 0 0 8 0 964.49779 P78527;B4DL41 P78527 72 79 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.017218 60.59 1 1 0.36555 0.34738 61.685 2 Median 0.50832 0.53733 NaN 1 0 Median 0.26288 0.22458 NaN 1 0 Median 46435000 28072000 18363000 40664000 23601000 17063000 5770700 4471100 1299700 12111 1665 12442 31901;31902 49735;49736 49735 2 SLNTDVLFGLLR LDHYSAIIMDEAHERSLNTDVLFGLLREVV HERSLNTDVLFGLLREVVARRSDLKLIVTS R S L L R E 0 1 1 1 0 0 0 1 0 0 4 0 0 1 0 1 1 0 0 1 0 0 12 0 1346.7558 A8K6G9;Q92620;B4DM30;B4DET0 A8K6G9 658 669 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 4.7756E-30 174.41 2 1.2026 1.2237 3.2491 2 Median 1.2026 1.2237 3.2491 2 0 Median NaN NaN NaN 0 0 Median 34824000 16254000 18570000 34824000 16254000 18570000 0 0 0 12112 760 12443 31903;31904 49737;49738;49739;49740 49738 4 SLNYCGHIYTPISCK HDVMLFLKMYDPKTRSLNYCGHIYTPISCK SLNYCGHIYTPISCKIRDLLPVMCDRAGFI R S L C K I 0 0 1 0 2 0 0 1 1 2 1 1 0 0 1 2 1 0 2 0 0 0 15 0 1811.8335 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5;I3L2D8 Q93009 698 712 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.060791 10.099 1 1.1846 0.99687 NaN 1 Median NaN NaN NaN 0 0 Median 1.1846 0.99687 NaN 1 0 Median 1915500 852280 1063200 0 0 0 1915500 852280 1063200 12113 1954 12444 31905 49741 49741 1 SLPALIEQGEGFSQVLR CRGETVAKEISEAMKSLPALIEQGEGFSQV PALIEQGEGFSQVLRMQPVIHLQRIHQEVF K S L L R M 1 1 0 0 0 2 2 2 0 1 3 0 0 1 1 2 0 0 0 1 0 0 17 0 1842.984 Q53FM2;B2R9C5;Q96IY1 Q53FM2 190 206 C1orf48;NSL1 Kinetochore-associated protein NSL1 homolog yes no 2 2.6598E-34 156.69 2 2 0.79485 0.72241 14.438 4 Median 0.63451 0.63938 11.222 2 0 Median 0.93955 0.79107 6.7967 2 0 Median 52729000 28576000 24152000 37158000 20861000 16296000 15571000 7715100 7855700 12114 866 12445 31906;31907;31908;31909 49742;49743;49744;49745;49746;49747;49748;49749 49743 8 SLPASLSFLVK LANLVTLELRENLLKSLPASLSFLVKLEQL NLLKSLPASLSFLVKLEQLDLGGNDLEVLP K S L V K L 1 0 0 0 0 0 0 0 0 0 3 1 0 1 1 3 0 0 0 1 0 0 11 0 1160.6805 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;Q14160 A0A0G2JMS7 84 94 SCRIB Protein scribble homolog yes no 2 0.036275 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12115 534 12446 31910 49750 49750 1 SLPDFTELDLQGK SAQVQQYQQFLDASRSLPDFTELDLQGKVL SRSLPDFTELDLQGKVLPEGVGPGDIKAFQ R S L G K V 0 0 0 2 0 1 1 1 0 0 3 1 0 1 1 1 1 0 0 0 0 0 13 0 1461.7351 P22670 P22670 582 594 RFX1 MHC class II regulatory factor RFX1 yes yes 2 0.022466 55.806 1 0.67957 0.67574 NaN 1 Median 0.67957 0.67574 NaN 1 0 Median NaN NaN NaN 0 0 Median 9594900 5809100 3785800 9594900 5809100 3785800 0 0 0 12116 1509 12447 31911 49751 49751 0 SLPDTELMK WGQKCAPMSDLTDLKSLPDTELMKDTARGQ DLTDLKSLPDTELMKDTARGQNLLQTQDHA K S L M K D 0 0 0 1 0 0 1 0 0 0 2 1 1 0 1 1 1 0 0 0 0 0 9 0 1032.5161 P46013 P46013 969 977 MKI67 Antigen KI-67 yes yes 2 0.0018333 70.919 3 2 2.3043 2.2277 9.7004 4 Median 2.1224 2.3945 3.1642 2 0 Median 2.5312 2.046 4.9878 2 0 Median 315810000 126120000 189690000 300100000 121510000 178590000 15710000 4613300 11096000 12117 1569 12448 31912;31913;31914;31915;31916 49752;49753;49754;49755;49756;49757;49758;49759 49753 1340 8 SLPEEDVAEIQHAEEFLIK VIILPKKHKKKKERKSLPEEDVAEIQHAEE EDVAEIQHAEEFLIKPESKVAKLDTSQWPL K S L I K P 2 0 0 1 0 1 5 0 1 2 2 1 0 1 1 1 0 0 0 1 0 0 19 0 2196.095 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 21 39 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 3 0.022614 19.292 2 0.97274 0.977 6.3483 2 Median 0.97274 0.977 6.3483 2 0 Median NaN NaN NaN 0 0 Median 12384000 6169300 6215200 12384000 6169300 6215200 0 0 0 12118 1398 12449 31917;31918 49760;49761 49761 2 SLPEEDVAEIQHAEEFLIKPESK VIILPKKHKKKKERKSLPEEDVAEIQHAEE EIQHAEEFLIKPESKVAKLDTSQWPLLLKN K S L S K V 2 0 0 1 0 1 6 0 1 2 2 2 0 1 2 2 0 0 0 1 0 0 23 1 2637.3174 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 21 43 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 3;4 8.7215E-10 80.683 3 4 0.86689 0.73963 31.046 7 Median 0.98326 1.1386 3.7153 3 0 Median 0.7984 0.67808 11.54 4 0 Median 328330000 172080000 156240000 176670000 85688000 90986000 151650000 86393000 65258000 12119 1398 12450 31919;31920;31921;31922;31923;31924;31925 49762;49763;49764;49765;49766;49767;49768;49769;49770;49771;49772 49769 11 SLPEWLSDR SSLNEVKIYSLSCGKSLPEWLSDRKKRALQ SLSCGKSLPEWLSDRKKRALQKKDVDVRRR K S L D R K 0 1 0 1 0 0 1 0 0 0 2 0 0 0 1 2 0 1 0 0 0 0 9 0 1101.5455 Q9BSC4 Q9BSC4 19 27 NOL10 Nucleolar protein 10 yes yes 2 0.0048471 68.224 2 2 1.1887 1.1262 14.997 4 Median 0.91319 1.0039 0.38428 2 0 Median 1.5826 1.2973 4.143 2 0 Median 125700000 61279000 64418000 97677000 49467000 48210000 28020000 11812000 16208000 12120 2000 12451 31926;31927;31928;31929 49773;49774;49775;49776;49777;49778 49776 6 SLPGCQEIAEEFR EPTKWNVEDVYEFIRSLPGCQEIAEEFRAQ IRSLPGCQEIAEEFRAQEIDGQALLLLKED R S L F R A 1 1 0 0 1 1 3 1 0 1 1 0 0 1 1 1 0 0 0 0 0 0 13 0 1534.7086 B3KPJ4;B4DG61;B7ZLY0;A0A0A0MSI2;Q8IXK0;P78365 B3KPJ4 411 423 PHC2;HPH2 Polyhomeotic-like protein 2 yes no 2 0.0011017 59.198 2 1.5689 1.316 12.078 2 Median NaN NaN NaN 0 0 Median 1.5689 1.316 12.078 2 0 Median 10281000 3902600 6378100 0 0 0 10281000 3902600 6378100 12121 479 12452 31930;31931 49779;49780 49780 2 SLPGQNEDLVLTGYQVDK VRAGDNKYMHLKVFKSLPGQNEDLVLTGYQ GQNEDLVLTGYQVDKNKDDELTGF______ K S L D K N 0 0 1 2 0 2 1 2 0 0 3 1 0 0 1 1 1 0 1 2 0 0 18 0 1974.9898 P01040 P01040 72 89 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 2 0.00059349 74.769 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6825800 6825800 0 6825800 6825800 0 0 0 0 12122 1438 12453 31932 49781 49781 1 SLPIVFDEFVDMDFGTGAVK QHLKGKNVIHPFLSRSLPIVFDEFVDMDFG FDEFVDMDFGTGAVKITPAHDQNDYEVGQR R S L V K I 1 0 0 3 0 0 1 2 0 1 1 1 1 3 1 1 1 0 0 3 0 0 20 0 2186.0606 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 572 591 VARS Valine--tRNA ligase yes no 2 7.4894E-05 40.552 1 1.1821 1.1808 NaN 1 Median 1.1821 1.1808 NaN 1 0 Median NaN NaN NaN 0 0 Median 15159000 7175400 7983200 15159000 7175400 7983200 0 0 0 12123 363 12454 31933 49782 49782 271 1 SLPIYSPEK YTYIGSVVISVNPYRSLPIYSPEKVEEYRN SVNPYRSLPIYSPEKVEEYRNRNFYELSPH R S L E K V 0 0 0 0 0 0 1 0 0 1 1 1 0 0 2 2 0 0 1 0 0 0 9 0 1032.5492 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5;C9JYW1;C9JUP5;C9K0I9 E9PDF6 60 68 MYO1B Unconventional myosin-Ib yes no 2 0.029769 46.129 1 1.8577 1.895 NaN 1 Median 1.8577 1.895 NaN 1 0 Median NaN NaN NaN 0 0 Median 14249000 4572000 9677400 14249000 4572000 9677400 0 0 0 12124 805 12455 31934 49783 49783 1 SLPLNPK ______________________________ ______________________________ M S L P K P 0 0 1 0 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 7 0 767.45414 P62306;A0A0B4J254;F8W0W6 P62306 2 8 SNRPF Small nuclear ribonucleoprotein F yes no 1 0.017841 60.788 1 1.4063 1.4855 NaN 1 Median 1.4063 1.4855 NaN 1 0 Median NaN NaN NaN 0 0 Median 23652000 9017100 14635000 23652000 9017100 14635000 0 0 0 12125 1643 12456 31935 49784 49784 0 SLPLPNDK HILLHDAYMFCIIDKSLPLPNDKTLLYNPF MFCIIDKSLPLPNDKTLLYNPFPPTNESDV K S L D K T 0 0 1 1 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 8 0 882.48108 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4 Q969X6 610 617 CIRH1A Cirhin yes no 2 0.013109 66.073 2 0.95975 1.0793 4.5817 2 Median 0.95975 1.0793 4.5817 2 0 Median NaN NaN NaN 0 0 Median 195820000 102610000 93208000 195820000 102610000 93208000 0 0 0 12126 1955 12457 31936;31937 49785;49786;49787 49787 3 SLPLVQVDEK KKLSTDVDLIVEVLRSLPLVQVDEKGEKVR VEVLRSLPLVQVDEKGEKVRPNQNRCIVIL R S L E K G 0 0 0 1 0 1 1 0 0 0 2 1 0 0 1 1 0 0 0 2 0 0 10 0 1126.6234 Q92615 Q92615 216 225 LARP4B La-related protein 4B yes yes 2 0.0098227 54.191 2 3.0294 3.1304 17.922 2 Median 3.0294 3.1304 17.922 2 0 Median NaN NaN NaN 0 0 Median 23451000 8267700 15184000 23451000 8267700 15184000 0 0 0 12127 1949 12458 31938;31939 49788;49789 49788 2 SLPNEEIVQK PIEGNQAGDAAASARSLPNEEIVQKIEEVL AASARSLPNEEIVQKIEEVLSGVLDTELRY R S L Q K I 0 0 1 0 0 1 2 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 10 0 1155.6136 P18583;D3DSF7;Q6ZRV7;J3QSZ5;Q3SWV4;A0JLP4 P18583 55 64 SON Protein SON yes no 2 0.0010045 77.732 2 1.2887 1.3969 12.695 2 Median 1.2887 1.3969 12.695 2 0 Median NaN NaN NaN 0 0 Median 79271000 35201000 44070000 79271000 35201000 44070000 0 0 0 12128 1499 12459 31940;31941 49790;49791;49792 49792 3 SLPNILTDDR EEEEKQKSTWKKKVKSLPNILTDDRFKVMF KKKVKSLPNILTDDRFKVMFENPDFQVDEE K S L D R F 0 1 1 2 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 10 0 1142.5932 Q9BSC4;B4DS83 Q9BSC4 475 484 NOL10 Nucleolar protein 10 yes no 2 1.3473E-05 102.62 2 2 1.1477 1.1104 8.4321 4 Median 0.96743 1.0972 1.1999 2 0 Median 1.4265 1.2054 11.114 2 0 Median 134890000 66076000 68810000 120650000 60542000 60104000 14240000 5533800 8706200 12129 2000 12460 31942;31943;31944;31945 49793;49794;49795;49796;49797;49798;49799;49800 49794 8 SLPNILTDDRFK EEEEKQKSTWKKKVKSLPNILTDDRFKVMF KVKSLPNILTDDRFKVMFENPDFQVDEESE K S L F K V 0 1 1 2 0 0 0 0 0 1 2 1 0 1 1 1 1 0 0 0 0 0 12 1 1417.7565 Q9BSC4;B4DS83 Q9BSC4 475 486 NOL10 Nucleolar protein 10 yes no 2;3 0.00098383 81.771 2 4 1.5571 1.2948 27.992 3 Median 0.78644 0.87165 NaN 1 0 Median 1.6398 1.3922 10.262 2 0 Median 63589000 28830000 34758000 30041000 19913000 10128000 33547000 8916900 24630000 12130 2000 12461 31946;31947;31948;31949;31950;31951 49801;49802;49803;49804;49805;49806;49807 49801 7 SLPSSSQLK IQQSSMKSPLYLVSRSLPSSSQLKGSPQAI LYLVSRSLPSSSQLKGSPQAISRASELHLL R S L L K G 0 0 0 0 0 1 0 0 0 0 2 1 0 0 1 4 0 0 0 0 0 0 9 0 945.51311 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1150 1158 AHCTF1 Protein ELYS yes no 2 0.0064086 64.265 2 1 1.5466 1.5303 22.758 3 Median 1.502 1.5162 1.3071 2 0 Median 2.7555 2.2481 NaN 1 0 Median 64346000 24688000 39658000 58269000 23189000 35080000 6076400 1498500 4577900 12131 1945 12462 31952;31953;31954 49808;49809;49810;49811;49812;49813 49808 6 SLPSVETLGCTSVICSDK ALGTRRMAKKNAIVRSLPSVETLGCTSVIC SVETLGCTSVICSDKTGTLTTNQMSVCRMF R S L D K T 0 0 0 1 2 0 1 1 0 1 2 1 0 0 1 4 2 0 0 2 0 0 18 0 1951.9231 A0A0S2Z3L2;P16615;H7C5W9;Q8N3X5;Q7Z675;Q7Z6E5;O14983;A8K9K1;Q93084;H3BTW4 A0A0S2Z3L2 335 352 ATP2A2;DKFZp779O2152;DKFZp779G2251;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Calcium-transporting ATPase;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 2 1.8715E-09 88.552 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15342000 0 15342000 13904000 0 13904000 1437500 0 1437500 12132 554 12463 31955;31956;31957 49814;49815;49816 49815 3 SLPTTVPESPNYR ANKLFGAPEPSTIARSLPTTVPESPNYRNT ARSLPTTVPESPNYRNTRTPRTPRTPQLKD R S L Y R N 0 1 1 0 0 0 1 0 0 0 1 0 0 0 3 2 2 0 1 1 0 0 13 0 1459.7307 E5RH50;A0A0B4J210;Q6PKG0;H0YC33 E5RH50 561 573 LARP1 La-related protein 1 yes no 2 0.0027541 67.726 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4815100 0 4815100 4815100 0 4815100 0 0 0 12133 500 12464 31958 49817;49818 49817 2 SLPVEEQPK LAKWKTAEEVAALIRSLPVEEQPKQIIVTR VAALIRSLPVEEQPKQIIVTRKGMLDPLEV R S L P K Q 0 0 0 0 0 1 2 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 9 0 1025.5393 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1851 1859 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.011198 58.596 2 0.84422 0.87069 6.0569 2 Median 0.84422 0.87069 6.0569 2 0 Median NaN NaN NaN 0 0 Median 47308000 22896000 24412000 47308000 22896000 24412000 0 0 0 12134 1854 12465 31959;31960 49819;49820 49820 2 SLQALGEVIEAELR AELGMEHQAVVGAVKSLQALGEVIEAELRS KSLQALGEVIEAELRSTKHWELTAEGEEIA K S L L R S 2 1 0 0 0 1 3 1 0 1 3 0 0 0 0 1 0 0 0 1 0 0 14 0 1526.8304 Q6IBR2;K7ER00;Q9Y285;K7EK06;K7ER16 Q6IBR2 43 56 FARSLA;FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 3.3454E-14 127.17 2 1.3238 1.3432 4.8688 2 Median 1.3238 1.3432 4.8688 2 0 Median NaN NaN NaN 0 0 Median 14198000 5875400 8322500 14198000 5875400 8322500 0 0 0 12135 1347 12466 31961;31962 49821;49822;49823;49824;49825;49826 49826 6 SLQEEHVAVAQLR SKRASFAEKTAQLERSLQEEHVAVAQLREE ERSLQEEHVAVAQLREEAERRAQQQAEAER R S L L R E 2 1 0 0 0 2 2 0 1 0 2 0 0 0 0 1 0 0 0 2 0 0 13 0 1478.7841 Q15149 Q15149 1732 1744 PLEC Plectin yes yes 2;3 2.5919E-06 105.17 4 1.2713 1.3408 13.254 4 Median 1.2713 1.3408 13.254 4 0 Median NaN NaN NaN 0 0 Median 110690000 50680000 60013000 110690000 50680000 60013000 0 0 0 12136 1754 12467 31963;31964;31965;31966 49827;49828;49829;49830;49831;49832 49829 5 SLQELFLAHILSPWGAEVK VVSEDFLQDVSASTKSLQELFLAHILSPWG LFLAHILSPWGAEVKAEPVEVVAPRGKSGA K S L V K A 2 0 0 0 0 1 2 1 1 1 4 1 0 1 1 2 0 1 0 1 0 0 19 0 2137.1572 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 468 486 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 3.4318E-78 173.77 2 0.58409 0.67731 1.7026 2 Median 0.58409 0.67731 1.7026 2 0 Median NaN NaN NaN 0 0 Median 505420000 311720000 193700000 505420000 311720000 193700000 0 0 0 12137 139 12468 31967;31968 49833;49834;49835 49833 3 SLQEQADAAEER MAGSSSLEAVRRKIRSLQEQADAAEERAGT KIRSLQEQADAAEERAGTLQRELDHERKLR R S L E R A 3 1 0 1 0 2 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 12 0 1345.611 Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;Q59GR8;Q07413;H0YN06 Q1ZYL5 16 27 TPM1 yes no 2 1.4823E-22 153.12 2 1.8578 1.8452 NaN 1 Median 1.8578 1.8452 NaN 1 0 Median NaN NaN NaN 0 0 Median 14711000 3706700 11005000 14711000 3706700 11005000 0 0 0 12138 1094 12469 31969;31970 49836;49837 49837 2 SLQESRPFSVDFFR AYRSGGYKKARAVFKSLQESRPFSVDFFRK KSLQESRPFSVDFFRKMIQFEKEQESCNMA K S L F R K 0 2 0 1 0 1 1 0 0 0 1 0 0 3 1 3 0 0 0 1 0 0 14 1 1713.8475 B3KQ21;Q9NYH9;B3KX32;Q9P1J8;J3KRR8 B3KQ21 499 512 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 3 8.3694E-05 58.487 2 1.489 1.3044 2.869 2 Median NaN NaN NaN 0 0 Median 1.489 1.3044 2.869 2 0 Median 30902000 12057000 18846000 0 0 0 30902000 12057000 18846000 12139 925 12470 31971;31972 49838;49839;49840;49841 49841 4 SLQHQEQLEDSK MASRWQNMGTSVRRRSLQHQEQLEDSKELQ RRRSLQHQEQLEDSKELQPVVSHQETSVGA R S L S K E 0 0 0 1 0 3 2 0 1 0 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1440.6845 I3L427;A0A0S2Z5C7;I3L419;A0A0S2Z5F0;I3L156;Q9BSJ6 I3L427 16 27 FAM64A Protein FAM64A yes no 2 0.00018807 76.332 1 1.0888 1.0815 NaN 1 Median 1.0888 1.0815 NaN 1 0 Median NaN NaN NaN 0 0 Median 6129000 2889900 3239100 6129000 2889900 3239100 0 0 0 12140 581 12471 31973 49842 49842 1 SLQQLAEER VATFNSIKELNERWRSLQQLAEERSQLLGS LNERWRSLQQLAEERSQLLGSAHEVQRFHR R S L E R S 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1072.5513 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16;B4DGT1 A0A0D9SF54 1197 1205 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0049289 68.016 2 3.1065 2.7469 8.4114 2 Median NaN NaN NaN 0 0 Median 3.1065 2.7469 8.4114 2 0 Median 4362000 1112100 3249800 0 0 0 4362000 1112100 3249800 12141 523 12472 31974;31975 49843;49844 49844 2 SLQSVAEER GKPVHHGVNQLKFARSLQSVAEERAGRHCG QLKFARSLQSVAEERAGRHCGALRVLNSYW R S L E R A 1 1 0 0 0 1 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 9 0 1017.5091 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7EX53 A0A024R2Q4 97 105 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 0.0043046 76.679 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3608800 0 3608800 3608800 0 3608800 0 0 0 12142 121 12473 31976 49845 49845 1 SLRPDPNFDALISK NKECPTCRKKLVSKRSLRPDPNFDALISKI RSLRPDPNFDALISKIYPSREEYEAHQDRV R S L S K I 1 1 1 2 0 0 0 0 0 1 2 1 0 1 2 2 0 0 0 0 0 0 14 1 1571.8308 A0A024RCR9;Q06587;B4DVB5;B4DW57;X6RFN3;Q99496 A0A024RCR9 67 80 RING1;RNF2 E3 ubiquitin-protein ligase RING1;E3 ubiquitin-protein ligase RING2 no no 2;3 0.00056723 57.175 5 1.2047 1.4163 9.5018 3 Median 1.2047 1.4163 9.5018 3 0 Median NaN NaN NaN 0 0 Median 135950000 62441000 73510000 135950000 62441000 73510000 0 0 0 12143 369;1992 12474 31977;31978;31979;31980;31981 49846;49847;49848;49849;49850;49851;49852;49853 49851 7 SLSAIYLEK RSELELTLGKLEQVRSLSAIYLEKLKTISL KLEQVRSLSAIYLEKLKTISLVIRGTQGAE R S L E K L 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 0 0 1 0 0 0 9 0 1022.5648 Q15149 Q15149 1216 1224 PLEC Plectin yes yes 2 0.008522 68.016 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8446800 8446800 0 8446800 8446800 0 0 0 0 12144 1754 12475 31982 49854 49854 1 SLSALGDVIAALR GAEGSRLREAQHINKSLSALGDVIAALRSR NKSLSALGDVIAALRSRQGHVPFRNSKLTY K S L L R S 3 1 0 1 0 0 0 1 0 1 3 0 0 0 0 2 0 0 0 1 0 0 13 0 1284.7402 H3BUC0;H3BTL6;B7Z3I6;B7Z896;B7Z8X8;F5H3M2;B7Z808;B7Z5U4;Q9BVG8 H3BUC0 30 42 KIFC3 Kinesin-like protein;Kinesin-like protein KIFC3 yes no 2 0.0024792 69.346 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2545400 0 2545400 2545400 0 2545400 0 0 0 12145 1089 12476 31983;31984 49855;49856 49856 2 SLSDNGQPGTPDPADSGGTSAK ELERVDEEEKEYTCKSLSDNGQPGTPDPAD PGTPDPADSGGTSAKESECITKPVSFLPQN K S L A K E 2 0 1 3 0 1 0 4 0 0 1 1 0 0 3 4 2 0 0 0 0 0 22 0 2057.9138 O75691 O75691 1732 1753 UTP20 Small subunit processome component 20 homolog yes yes 2 6.9667E-06 48.527 1 1 2.1938 1.955 33.494 2 Median 2.4502 2.4775 NaN 1 0 Median 1.9642 1.5427 NaN 1 0 Median 10857000 3474500 7382900 8806500 2659200 6147200 2051000 815260 1235700 12146 1412 12477 31985;31986 49857;49858;49859 49857 3 SLSDPCYYNK AGLTGPPRPCSFCRRSLSDPCYYNKVDRTV SFCRRSLSDPCYYNKVDRTVYQFCSPSCWT R S L N K V 0 0 1 1 1 0 0 0 0 0 1 1 0 0 1 2 0 0 2 0 0 0 10 0 1245.5336 A6NHB5;Q14202;A6NHN7 A6NHB5 554 563 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.00071336 82.426 1 0.71844 0.73524 NaN 1 Median 0.71844 0.73524 NaN 1 0 Median NaN NaN NaN 0 0 Median 25644000 13625000 12019000 25644000 13625000 12019000 0 0 0 12147 681 12478 31987 49860;49861 49861 2 SLSDTLVSTTAPSGIVNVSVK SSEPPFGPRNVIENKSLSDTLVSTTAPSGI VSTTAPSGIVNVSVKQQTSPKSSQNHLFPG K S L V K Q 1 0 1 1 0 0 0 1 0 1 2 1 0 0 1 5 3 0 0 4 0 0 21 0 2074.1158 Q5VWN6 Q5VWN6 1586 1606 FAM208B Protein FAM208B yes yes 2 0.032587 21.886 1 1.8537 1.4428 NaN 1 Median NaN NaN NaN 0 0 Median 1.8537 1.4428 NaN 1 0 Median 3532500 1263800 2268700 0 0 0 3532500 1263800 2268700 12148 1833 12479 31988 49862 49862 1 SLSEIHSPNIQDSSFDSVR KMVKNKPDFYTKAFRSLSEIHSPNIQDSSF IHSPNIQDSSFDSVREGLVPLSVSSGKNVI R S L V R E 0 1 1 2 0 1 1 0 1 2 1 0 0 1 1 6 0 0 0 1 0 0 19 0 2117.0025 Q562F6;B7Z7S9 Q562F6 1138 1156 SGOL2 Shugoshin-like 2 yes no 3 8.6358E-06 47.088 1 2 1.9964 1.6884 10.539 2 Median NaN NaN NaN 0 0 Median 1.9964 1.6884 10.539 2 0 Median 23002000 14358000 8644100 9875800 9875800 0 13126000 4481700 8644100 12149 1795 12480 31989;31990;31991 49863;49864;49865;49866;49867 49865 4 SLSIEIGHEVK ERLTESLRSKVTAIKSLSIEIGHEVKTQNK TAIKSLSIEIGHEVKTQNKLLAEMVSGYDF K S L V K T 0 0 0 0 0 0 2 1 1 2 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1210.6558 C9JTT8;Q53XK0;Q68DU7;H7C1N3;O15155 C9JTT8 48 58 BET1;DKFZp781C0425 BET1 homolog yes no 2 7.3902E-08 113.62 2 2 0.93096 0.86103 30.642 4 Median 1.1058 1.1156 11.448 2 0 Median 0.80186 0.67103 10.072 2 0 Median 50497000 21115000 29382000 46703000 18961000 27741000 3794200 2153600 1640600 12150 1142 12481 31992;31993;31994;31995 49868;49869;49870;49871;49872;49873;49874 49869 7 SLSPDCGGSIEVMQSFLK LLKESGPSGIETELRSLSPDCGGSIEVMQS PDCGGSIEVMQSFLKMIGMMLDRKRDFELA R S L L K M 0 0 0 1 1 1 1 2 0 1 2 1 1 1 1 4 0 0 0 1 0 0 18 0 1953.9176 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 805 822 WDR36 WD repeat-containing protein 36 yes no 2 2.9009E-06 68.044 2 3 1.4081 1.1011 3.9892 3 Median NaN NaN NaN 0 0 Median 1.4081 1.1011 3.9892 3 0 Median 32696000 11105000 21591000 4880600 0 4880600 27816000 11105000 16711000 12151 486 12482;12483 31996;31997;31998;31999;32000 49875;49876;49877;49878;49879;49880;49881 49875 335 7 SLSSSLDDTEVK ISTTASKTETPIVSKSLSSSLDDTEVKKVM VSKSLSSSLDDTEVKKVMEECKRLQGEVQR K S L V K K 0 0 0 2 0 0 1 0 0 0 2 1 0 0 0 4 1 0 0 1 0 0 12 0 1279.6143 Q53XM7;O95292;B4DNS4;Q6ZSP7;Q6ZR82;B3KVU7 Q53XM7 156 167 VAPB Vesicle-associated membrane protein-associated protein B/C yes no 2 0.0019686 72.006 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19739000 0 19739000 19739000 0 19739000 0 0 0 12152 1423 12484 32001 49882 49882 1 SLSTTNVFACSDRPTVIYSSNHK KVTLGTQPTVLRTFRSLSTTNVFACSDRPT ACSDRPTVIYSSNHKLVFSNVNLKEVNYMC R S L H K L 1 1 2 1 1 0 0 0 1 1 1 1 0 1 1 5 3 0 1 2 0 0 23 1 2583.2388 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 643 665 DDB1 DNA damage-binding protein 1 yes no 3;4 6.2908E-08 53.342 1 4 1.2069 1.0113 15.266 5 Median 0.64421 0.73019 NaN 1 0 Median 1.2182 1.0263 2.8627 4 0 Median 48761000 25580000 23180000 16875000 10428000 6447100 31885000 15152000 16733000 12153 1770 12485 32002;32003;32004;32005;32006 49883;49884;49885;49886;49887;49888 49884 6 SLSTWQPTLLPNNTVFSR FTDLYYLTFVQELNKSLSTWQPTLLPNNTV TWQPTLLPNNTVFSRVEEEHLWECKQLGVY K S L S R V 0 1 2 0 0 1 0 0 0 0 3 0 0 1 2 3 3 1 0 1 0 0 18 0 2060.0691 A6NHB5;Q14202 A6NHB5 1173 1190 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 4.5007E-05 59.57 1 0.55886 0.55657 NaN 1 Median 0.55886 0.55657 NaN 1 0 Median NaN NaN NaN 0 0 Median 8597700 5305000 3292600 8597700 5305000 3292600 0 0 0 12154 681 12486 32007 49889 49889 1 SLSVLSSSTIIANPDIPEAYK VLAIKGARVSDFGGRSLSVLSSSTIIANPD SSTIIANPDIPEAYKLRGWFDAEGQALDGV R S L Y K L 2 0 1 1 0 0 1 0 0 3 2 1 0 0 2 5 1 0 1 1 0 0 21 0 2204.1576 P27694;I3L4R8 P27694 390 410 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 4.3697E-05 44.601 2 0.31673 0.25074 0.7946 2 Median NaN NaN NaN 0 0 Median 0.31673 0.25074 0.7946 2 0 Median 28294000 20992000 7301100 0 0 0 28294000 20992000 7301100 12155 1525 12487 32008;32009 49890;49891;49892;49893 49892 4 SLTALSEPR PGRGASEGLPRMCTRSLTALSEPRTPGPPG PRMCTRSLTALSEPRTPGPPGLTTTPAPPD R S L P R T 1 1 0 0 0 0 1 0 0 0 2 0 0 0 1 2 1 0 0 0 0 0 9 0 972.52401 Q7Z5J4 Q7Z5J4 1059 1067 RAI1 Retinoic acid-induced protein 1 yes yes 2 0.024384 48.283 2 1.3403 1.1828 2.7966 2 Median NaN NaN NaN 0 0 Median 1.3403 1.1828 2.7966 2 0 Median 4709600 1836400 2873200 0 0 0 4709600 1836400 2873200 12156 1879 12488 32010;32011 49894;49895;49896;49897 49897 4 SLTANPELIDR IEEGIPAFTCEEYVKSLTANPELIDRLACL EYVKSLTANPELIDRLACLSEEGNEIESGK K S L D R L 1 1 1 1 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 11 0 1227.6459 Q49AG4;G3V1J5;A8QI98;Q9Y2L1;F2Z2C0 Q49AG4 38 48 DIS3 Exosome complex exonuclease RRP44 yes no 2 0.0059147 55.353 1 1.2203 1.2159 NaN 1 Median 1.2203 1.2159 NaN 1 0 Median NaN NaN NaN 0 0 Median 11697000 4266700 7430000 11697000 4266700 7430000 0 0 0 12157 802 12489 32012 49898 49898 1 SLTDPSQESHTEAISDAETSSSDISFSGIATR LPTEKTTGARRSKAKSLTDPSQESHTEAIS ETSSSDISFSGIATRRTRSMQRKLKAQTEK K S L T R R 3 1 0 3 0 1 3 1 1 3 1 0 0 1 1 9 4 0 0 0 0 0 32 0 3325.507 Q5QJE6;J3KP30;B7Z854 Q5QJE6 170 201 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 3 1.7313E-36 100.86 3 2 1.3411 1.3328 14.664 4 Median 1.0734 1.2103 3.8545 2 0 Median 1.7606 1.5271 9.4608 2 0 Median 293470000 122150000 171320000 152680000 70771000 81913000 140790000 51377000 89409000 12158 1813 12490 32013;32014;32015;32016;32017 49899;49900;49901;49902;49903;49904;49905;49906;49907;49908;49909;49910;49911 49908 13 SLTEYLQNVEQK AACQLRISQHEAKIKSLTEYLQNVEQKKRQ KIKSLTEYLQNVEQKKRQLEESVDALSEEL K S L Q K K 0 0 1 0 0 2 2 0 0 0 2 1 0 0 0 1 1 0 1 1 0 0 12 0 1450.7304 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;B4DS27 V9HW29 645 656 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 7.6188E-07 112.36 2 1.2832 1.2958 1.8719 2 Median 1.2832 1.2958 1.8719 2 0 Median NaN NaN NaN 0 0 Median 28773000 11773000 17000000 28773000 11773000 17000000 0 0 0 12159 1186 12491 32018;32019 49912;49913;49914;49915 49912 4 SLTFSPDSQLLVTASDDGYIK GKLLHTLEGHAMPIRSLTFSPDSQLLVTAS DSQLLVTASDDGYIKIYDVQHANLAGTLSG R S L I K I 1 0 0 3 0 1 0 1 0 1 3 1 0 1 1 4 2 0 1 1 0 0 21 0 2256.1162 H0YN81;Q9GZS3;H0YL19;H3BQA8;H0YLA1 H0YN81 195 215 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 2.3991E-16 111.74 2 2 1.5914 1.5011 24.703 4 Median 1.6795 1.8602 0.16035 2 0 Median 1.5028 1.2127 0.0036354 2 0 Median 128310000 46917000 81393000 107020000 38293000 68728000 21290000 8624500 12666000 12160 1299 12492 32020;32021;32022;32023 49916;49917;49918;49919;49920;49921;49922;49923;49924;49925;49926 49920 11 SLTGVVNAQALTSAFSPHTK GEEIAVQFVDMVKGKSLTGVVNAQALTSAF VNAQALTSAFSPHTKPWIGLAEALGTLMRA K S L T K P 3 0 1 0 0 1 0 1 1 0 2 1 0 1 1 3 3 0 0 2 0 0 20 0 2028.064 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 311 330 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.0011708 45.864 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16235000 0 16235000 16235000 0 16235000 0 0 0 12161 1382 12493 32024;32025 49927;49928 49928 2 SLTLAR DEIPYLLDLHLFLGRSLTLARPLKEPSGVA LDLHLFLGRSLTLARPLKEPSGVAGVDGML R S L A R P 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 6 0 659.39662 Q8TDD1 Q8TDD1 460 465 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.028811 109.88 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37176000 37176000 0 37176000 37176000 0 0 0 0 12162 1933 12494 32026;32027 49929;49930 49930 2 SLTNDWEDHLAVK NPDDITQEEYGEFYKSLTNDWEDHLAVKHF YKSLTNDWEDHLAVKHFSVEGQLEFRALLF K S L V K H 1 0 1 2 0 0 1 0 1 0 2 1 0 0 0 1 1 1 0 1 0 0 13 0 1526.7365 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 B4DMA2 269 281 HSP90AB1;EL52;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha no no 2;3 3.7438E-16 120.86 4 2 1.9406 2.236 41.902 3 Median 1.9628 2.237 0.062099 2 0 Median 1.3529 1.0826 NaN 1 0 Median 334540000 97986000 236560000 313050000 89188000 223860000 21492000 8798000 12694000 12163 379;1348 12495 32028;32029;32030;32031;32032;32033 49931;49932;49933;49934;49935;49936;49937;49938;49939 49937 9 SLTQSYLR GRLPMPEDYAMDELRSLTQSYLRELAVGSL YAMDELRSLTQSYLRELAVGSL________ R S L L R E 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 2 1 0 1 0 0 0 8 0 966.51345 P52948;H7C3P6 P52948 1803 1810 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.026448 54.549 1 0.97301 0.99768 NaN 1 Median 0.97301 0.99768 NaN 1 0 Median NaN NaN NaN 0 0 Median 14400000 6887100 7513200 14400000 6887100 7513200 0 0 0 12164 1603 12496 32034 49940 49940 1 SLTQTFATVEVGR AVSVHSNLNSEAVMKSLTQTFATVEVGRWN MKSLTQTFATVEVGRWNNNKKSPIKASDLT K S L G R W 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 1 3 0 0 2 0 0 13 0 1407.7358 Q5QJE6;J3KP30;B7Z854 Q5QJE6 362 374 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 1.3937E-38 179.57 2 2 1.0868 1.0899 14.765 4 Median 0.82633 0.95381 1.8818 2 0 Median 1.4347 1.2309 0.2239 2 0 Median 451580000 238320000 213260000 390230000 212150000 178070000 61358000 26169000 35188000 12165 1813 12497 32035;32036;32037;32038 49941;49942;49943;49944;49945;49946;49947;49948;49949;49950 49944 10 SLTSATSTSNIQSSASQPPRPQQGQVK AVSAPNTVSSTPGQKSLTSATSTSNIQSSA SSASQPPRPQQGQVKLTMAQLTQLTQGHGG K S L V K L 2 1 1 0 0 5 0 1 0 1 1 1 0 0 3 7 3 0 0 1 0 0 27 1 2784.4002 E7ETD6;Q12830;F5GXF5 E7ETD6 2107 2133 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 7.2409E-35 120.64 2 2 1.1737 1.1746 25.93 4 Median 0.79564 0.93486 1.9834 2 0 Median 1.7333 1.4641 0.86116 2 0 Median 102690000 54683000 48004000 86215000 49078000 37138000 16471000 5604900 10867000 12166 1224 12498 32039;32040;32041;32042 49951;49952;49953;49954;49955;49956;49957;49958 49955 8 SLTVIPYK QLWYYGEHLFMLHGKSLTVIPYKCEVSSLA LFMLHGKSLTVIPYKCEVSSLAGALGKLKH K S L Y K C 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 1 0 0 8 0 919.53787 Q9H8H0 Q9H8H0 325 332 NOL11 Nucleolar protein 11 yes yes 2 0.010479 72.138 2 2 1.2304 1.1451 9.9038 4 Median 1.0897 1.2415 5.7886 2 0 Median 1.3269 1.0639 4.7504 2 0 Median 340480000 169330000 171150000 313250000 158050000 155200000 27225000 11280000 15945000 12167 2042 12499 32043;32044;32045;32046 49959;49960;49961;49962;49963;49964 49959 6 SLTYLSILR SLVELGDLDPLASLKSLTYLSILRNPVTNK PLASLKSLTYLSILRNPVTNKKHYRLYVIY K S L L R N 0 1 0 0 0 0 0 0 0 1 3 0 0 0 0 2 1 0 1 0 0 0 9 0 1064.623 Q53G61;Q53G21;P09661;H0YMA0;H0YKK0;Q6NVW9 Q53G61 114 122 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.0036023 71.379 2 2 1.1747 1.1039 33.725 4 Median 1.4365 1.4513 9.7903 2 0 Median 0.95908 0.8264 12.037 2 0 Median 37483000 15246000 22237000 32102000 12826000 19275000 5381100 2419300 2961800 12168 1461 12500 32047;32048;32049;32050 49965;49966;49967;49968;49969;49970;49971;49972;49973;49974;49975 49969 11 SLVAFEGEGQFEK QFFGDAPERAWIFEKSLVAFEGEGQFEKLC EKSLVAFEGEGQFEKLCQESAKQAPTKAEK K S L E K L 1 0 0 0 0 1 3 2 0 0 1 1 0 2 0 1 0 0 0 1 0 0 13 0 1439.6933 O96028;Q05CW4;D6R9V2 O96028 280 292 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.00012689 78.653 2 2.13 1.7025 8.6497 2 Median NaN NaN NaN 0 0 Median 2.13 1.7025 8.6497 2 0 Median 24507000 8867900 15639000 0 0 0 24507000 8867900 15639000 12169 1435 12501 32051;32052 49976;49977;49978 49978 3 SLVALLVETQMK TKAKHLAAVEERKIKSLVALLVETQMKKLE KIKSLVALLVETQMKKLEIKLRHFEELETI K S L M K K 1 0 0 0 0 1 1 0 0 0 3 1 1 0 0 1 1 0 0 2 0 0 12 0 1330.753 Q58EY4;Q92922;B4DYQ1;B4DYF9;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 894 905 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 8.235E-06 104.79 3 2 1.2617 1.1386 9.3091 4 Median 1.0592 1.0705 10.59 2 0 Median 1.474 1.1816 7.1018 2 0 Median 48523000 24063000 24459000 42672000 21559000 21113000 5850500 2503900 3346600 12170 1798;321 12502;12503 32053;32054;32055;32056;32057 49979;49980;49981;49982;49983 49980 246 5 SLVDLTAVDVPTR PVLTFLRDHTNAQFKSLVDLTAVDVPTRQN FKSLVDLTAVDVPTRQNRFEIVYNLLSLRF K S L T R Q 1 1 0 2 0 0 0 0 0 0 2 0 0 0 1 1 2 0 0 3 0 0 13 0 1384.7562 Q9UF24;O75489;Q53FM7;E9PS48 Q9UF24 36 48 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 2 0.00012284 77.64 1 1.7211 1.71 NaN 1 Median 1.7211 1.71 NaN 1 0 Median NaN NaN NaN 0 0 Median 7396800 3400100 3996600 7396800 3400100 3996600 0 0 0 12171 1406 12504 32058 49984 49984 1 SLVEASSSGVSVLSLCEK TKYKMGGDIANRVLRSLVEASSSGVSVLSL EASSSGVSVLSLCEKGDAMIMEETGKIFKK R S L E K G 1 0 0 0 1 0 2 1 0 0 3 1 0 0 0 6 0 0 0 3 0 0 18 0 1850.9295 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08;F8VR77;H0YIN7;F8W0A3 A8K6Y1 34 51 PA2G4 Proliferation-associated protein 2G4 yes no 2 3.1156E-06 76.262 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8679600 0 8679600 5283400 0 5283400 3396200 0 3396200 12172 328 12505 32059;32060 49985;49986 49985 2 SLVEIIEHGLVDEQQK QIAILMGCAILPHLRSLVEIIEHGLVDEQQ LVEIIEHGLVDEQQKVRTISALAIAALAEA R S L Q K V 0 0 0 1 0 2 3 1 1 2 2 1 0 0 0 1 0 0 0 2 0 0 16 0 1835.9629 O75533;Q7Z497 O75533 685 700 SF3B1 Splicing factor 3B subunit 1 yes no 3 0.00087646 39.143 1 2 0.64954 0.51189 18.671 3 Median 0.49939 0.51189 NaN 1 0 Median 0.74678 0.59633 23.276 2 0 Median 26792000 16884000 9907800 17625000 11753000 5872400 9166300 5130900 4035300 12173 1408 12506 32061;32062;32063 49987;49988;49989;49990;49991;49992 49987 6 SLVGGLLQSK SPRLPISASHSSKTRSLVGGLLQSKFTSGA SSKTRSLVGGLLQSKFTSGAFLSPSVSVQE R S L S K F 0 0 0 0 0 1 0 2 0 0 3 1 0 0 0 2 0 0 0 1 0 0 10 0 1000.5917 P52948;H7C3P6;A0A024RCC4 P52948 1043 1052 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.025233 44.719 2 1.5588 1.6308 10.916 2 Median 1.5588 1.6308 10.916 2 0 Median NaN NaN NaN 0 0 Median 22503000 7830600 14672000 22503000 7830600 14672000 0 0 0 12174 1603 12507 32064;32065 49993;49994 49994 2 SLVGLGGTK GGGGGGFGGGGFGSRSLVGLGGTKSISISV GGFGSRSLVGLGGTKSISISVAGGGGGFGA R S L T K S 0 0 0 0 0 0 0 3 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 830.48617 CON__P35908;P35908 CON__P35908 62 70 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 0.018019 60.436 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 160620000 160620000 0 150570000 150570000 0 10046000 10046000 0 + 12175 1166 12508 32066;32067;32068 49995;49996;49997 49995 3 SLVGLQEELLFQYPDTR SALKNSHKALKALLRSLVGLQEELLFQYPD VGLQEELLFQYPDTRYLVDGTKPNAGSEEI R S L T R Y 0 1 0 1 0 2 2 1 0 0 4 0 0 1 1 1 1 0 1 1 0 0 17 0 2007.0313 Q9NY61 Q9NY61 288 304 AATF Protein AATF yes yes 2 2.5164E-25 145.17 2 1 1.0198 1.145 7.6742 2 Median 1.0198 1.145 7.6742 2 0 Median NaN NaN NaN 0 0 Median 153460000 97525000 55933000 112680000 56752000 55933000 40773000 40773000 0 12176 2080 12509 32069;32070;32071 49998;49999;50000;50001;50002;50003 49998 6 SLVHDLFQK EKELQKLTQEETNFKSLVHDLFQKVEEAKS EETNFKSLVHDLFQKVEEAKSSLAMNRSRG K S L Q K V 0 0 0 1 0 1 0 0 1 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1085.5869 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 574 582 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 1.3591E-11 140.5 3 3 0.84921 0.95753 31.915 3 Median 0.80751 0.85855 15.432 2 0 Median 1.7328 1.4433 NaN 1 0 Median 279310000 113100000 166210000 219250000 79705000 139550000 60060000 33394000 26666000 12177 2070 12510 32072;32073;32074;32075;32076;32077 50004;50005;50006;50007;50008;50009;50010;50011;50012;50013 50009 10 SLVMHTPPVLK PNTPLKRGEAPTKRKSLVMHTPPVLKKIIK TKRKSLVMHTPPVLKKIIKEQPQPSGKQES K S L L K K 0 0 0 0 0 0 0 0 1 0 2 1 1 0 2 1 1 0 0 2 0 0 11 0 1220.6951 P46013;Q70L73 P46013 538 548 MKI67 Antigen KI-67 no no 2;3 3.7222E-13 147.2 6 4 2.6979 2.8298 16.888 9 Median 2.5178 2.8298 14.439 5 0 Median 3.922 3.1626 20.541 4 0 Linear 535340000 158040000 377300000 506090000 151390000 354690000 29251000 6650300 22601000 12178 1569;1864 12511;12512 32078;32079;32080;32081;32082;32083;32084;32085;32086;32087 50014;50015;50016;50017;50018;50019;50020;50021;50022;50023;50024;50025;50026;50027;50028;50029 50019 1341 16 SLVNLGGSK GGGGSFGAGGGFGSRSLVNLGGSKSISISV GGFGSRSLVNLGGSKSISISVARGGGRGSG R S L S K S 0 0 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 0 1 0 0 9 0 873.49198 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRG2 H6VRG3 66 74 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.0901E-05 114.5 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 878390000 878390000 0 833590000 833590000 0 44794000 44794000 0 + 12179 1308;1309 12513 32088;32089 50030;50031;50032 50030 3 SLVPAAELLESR EEQEQKGRLCFEGLRSLVPAAELLESRVID GLRSLVPAAELLESRVIDRELYQQLQRGER R S L S R V 2 1 0 0 0 0 2 0 0 0 3 0 0 0 1 2 0 0 0 1 0 0 12 0 1283.7085 Q15149;D3DWL0 Q15149 3116 3127 PLEC;PLEC1 Plectin yes no 2 1.7582E-05 104.52 2 2 2.0401 1.9644 4.1107 4 Median 1.7509 1.9424 3.387 2 0 Median 2.4766 2.012 5.1812 2 0 Median 195420000 69012000 126410000 169560000 61185000 108380000 25854000 7826800 18027000 12180 1754 12514 32090;32091;32092;32093 50033;50034;50035;50036;50037;50038;50039;50040;50041;50042;50043;50044 50034 12 SLVQEMVGSFGK INVDDFKIIYIAPMRSLVQEMVGSFGKRLA PMRSLVQEMVGSFGKRLATYGITVAELTGD R S L G K R 0 0 0 0 0 1 1 2 0 0 1 1 1 1 0 2 0 0 0 2 0 0 12 0 1280.6435 O75643;A4FU77;Q9H8B9;Q5ZF01 O75643 546 557 SNRNP200;ASCC3L1 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 8.6051E-09 110.39 3 1 1.8444 1.9168 NaN 1 Median 1.8444 1.9168 NaN 1 0 Median NaN NaN NaN 0 0 Median 32419000 8262500 24157000 31122000 6965200 24157000 1297300 1297300 0 12181 1411 12515;12516 32094;32095;32096;32097 50045;50046;50047;50048;50049;50050 50049 1100 6 SLVSAPTQILAQFPK TSAIKMASTRLPSPKSLVSAPTQILAQFPK SLVSAPTQILAQFPKQHQQSPKQQLYQVQQ K S L P K Q 2 0 0 0 0 2 0 0 0 1 2 1 0 1 2 2 1 0 0 1 0 0 15 0 1598.9032 B4E1Z2;Q7Z589 B4E1Z2 338 352 EMSY Protein EMSY yes no 2 0.00064413 53.08 2 0.62715 0.64946 22.186 2 Median 0.62715 0.64946 22.186 2 0 Median NaN NaN NaN 0 0 Median 10897000 6284300 4612600 10897000 6284300 4612600 0 0 0 12182 1069 12517 32098;32099 50051;50052;50053;50054 50054 4 SLVSGLIR IYCSRSKADYTSHLRSLVSGLIRLFNDSSP DYTSHLRSLVSGLIRLFNDSSPVVLEESWD R S L I R L 0 1 0 0 0 0 0 1 0 1 2 0 0 0 0 2 0 0 0 1 0 0 8 0 843.5178 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2192 2199 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.027969 53.554 2 1.9512 1.9722 1.884 2 Median 1.9512 1.9722 1.884 2 0 Median NaN NaN NaN 0 0 Median 29778000 10350000 19427000 29778000 10350000 19427000 0 0 0 12183 1205 12518 32100;32101 50055;50056;50057 50056 3 SLVSKGTLVQTK YDVEKNNSRIKLGLKSLVSKGTLVQTKGTG GLKSLVSKGTLVQTKGTGASGSFKLNKKAA K S L T K G 0 0 0 0 0 1 0 1 0 0 2 2 0 0 0 2 2 0 0 2 0 0 12 1 1259.7449 Q4VB24;B2R984;A3R0T8;P10412;P16402;Q02539;P16403;P16401 P16401 89 100 HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1C;HIST1H1B Histone H1.4;Histone H1.3;Histone H1.1;Histone H1.2;Histone H1.5 no no 2 0.0087041 60.691 1 0.99052 1.1301 NaN 1 Median 0.99052 1.1301 NaN 1 0 Median NaN NaN NaN 0 0 Median 12258000 5681900 6576400 12258000 5681900 6576400 0 0 0 12184 1489;656;1490 12519 32102 50058 50058 1 SLVSVTK IDEYCVQQLKEFDGKSLVSVTKEGLELPED QLKEFDGKSLVSVTKEGLELPEDEEEKKKM K S L T K E 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 0 2 0 0 7 0 732.43815 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9;Q58FF7;Q58FF8 B4DMA2 494 500 HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 2 0.013442 104.21 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32926000 32926000 0 32926000 32926000 0 0 0 0 12185 379;1800 12520 32103;32104 50059;50060 50060 2 SLWQQPSVGDILR PAAVEHHKTCRSLGRSLWQQPSVGDILRLL GRSLWQQPSVGDILRLLDRDRMMQTILHFP R S L L R L 0 1 0 1 0 2 0 1 0 1 2 0 0 0 1 2 0 1 0 1 0 0 13 0 1497.794 O60287 O60287 1583 1595 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00012908 87.568 3 2 1.0786 0.9597 9.8081 3 Median 0.95329 0.9597 NaN 1 0 Median 1.1834 0.98586 13.696 2 0 Median 29404000 14624000 14781000 20282000 10557000 9725400 9122000 4066700 5055300 12186 1392 12521 32105;32106;32107;32108;32109 50061;50062;50063;50064;50065 50064 5 SLYASSPGGVYATR RTYSLGSALRPSTSRSLYASSPGGVYATRS RSLYASSPGGVYATRSSAVRLRSSVPGVRL R S L T R S 2 1 0 0 0 0 0 2 0 0 1 0 0 0 1 3 1 0 2 1 0 0 14 0 1427.7045 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;A0A1B0GUA0;A0A1B0GTT5;A0A1B0GVG8 V9HWE1 51 64 HEL113;VIM Vimentin yes no 2 1.3796E-10 137.01 2 2 1.6971 1.6692 37.244 4 Median 1.0768 1.2331 5.1756 2 0 Median 2.7396 2.3292 9.4737 2 0 Median 390270000 180060000 210210000 342150000 166780000 175370000 48117000 13280000 34837000 12187 1457 12522 32110;32111;32112;32113 50066;50067;50068;50069;50070;50071;50072;50073 50069 8 SLYDEVAAQGEVVR QNISSNSSASILESKSLYDEVAAQGEVVRK KSLYDEVAAQGEVVRKLKAEKSPKAKINEA K S L V R K 2 1 0 1 0 1 2 1 0 0 1 0 0 0 0 1 0 0 1 3 0 0 14 0 1534.7627 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 825 838 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 6.5363E-23 142.08 2 2.4955 2.6673 NaN 1 Median 2.4955 2.6673 NaN 1 0 Median NaN NaN NaN 0 0 Median 65196000 13023000 52173000 65196000 13023000 52173000 0 0 0 12188 1454 12523 32114;32115 50074;50075;50076 50076 3 SLYGLGGSK GGLGGACGGAGFGSRSLYGLGGSKRISIGG AGFGSRSLYGLGGSKRISIGGGSCAISGGY R S L S K R 0 0 0 0 0 0 0 3 0 0 2 1 0 0 0 2 0 0 1 0 0 0 9 0 880.46543 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;A0A0S2Z427;CON__P04259;B4DKV4 B2R853 60 68 KRT6C;KRT6A Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 0.0084211 68.224 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46233000 46233000 0 46233000 46233000 0 0 0 0 + 12189 859;1154 12524 32116 50077 50077 1 SLYNLGGSK VSLAGACGVGGYGSRSLYNLGGSKRISIST GGYGSRSLYNLGGSKRISISTSGGSFRNRF R S L S K R 0 0 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 1 0 0 0 9 0 937.4869 CON__P13647;P13647;F8VV57 CON__P13647 64 72 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.015282 62.582 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70851000 70851000 0 67723000 67723000 0 3127700 3127700 0 + 12190 1162 12525 32117;32118;32119 50078;50079;50080 50080 3 SLYQSAGVAPESFEYIEAHGTGTK GVTFPSGDIQEQLIRSLYQSAGVAPESFEY PESFEYIEAHGTGTKVGDPQELNGITRALC R S L T K V 3 0 0 0 0 1 3 3 1 1 1 1 0 1 1 3 2 0 2 1 0 0 24 0 2541.2023 A0A0U1RQF0;P49327 A0A0U1RQF0 275 298 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 4.0708E-09 50.945 2 2 0.98204 0.9075 66.397 4 Median 1.4226 1.551 0.17157 2 0 Median 0.6227 0.49348 10.529 2 0 Median 103870000 47860000 56009000 77786000 31981000 45805000 26083000 15878000 10205000 12191 587 12526 32120;32121;32122;32123 50081;50082;50083;50084;50085;50086;50087;50088;50089;50090 50083 10 SLYTDESSKPGK SSGNRDSKVPSEGKKSLYTDESSKPGKNKR GKKSLYTDESSKPGKNKRTAITTPNFKKLH K S L G K N 0 0 0 1 0 0 1 1 0 0 1 2 0 0 1 3 1 0 1 0 0 0 12 1 1310.6354 Q9BXS6;A8K4B4;H0YMD2 Q9BXS6 163 174 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 3.777E-08 123.75 2 0.54426 0.46595 1.5306 2 Median NaN NaN NaN 0 0 Median 0.54426 0.46595 1.5306 2 0 Median 11793000 7260300 4532600 0 0 0 11793000 7260300 4532600 12192 2014 12527 32124;32125 50091;50092;50093 50091 3 SLYYYIQQDTK DMLKIRSEFKRKYGKSLYYYIQQDTKGDYQ KYGKSLYYYIQQDTKGDYQKALLYLCGGDD K S L T K G 0 0 0 1 0 2 0 0 0 1 1 1 0 0 0 1 1 0 3 0 0 0 11 0 1420.6874 V9HW65;A0A024R5Z7;P07355;B4DNH8;A6NMY6 V9HW65 314 324 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2 0.040808 60.167 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7532600 7532600 0 7532600 7532600 0 0 0 0 12193 193 12528 32126 50094 50094 1 SMDEFTASTPADLGEAGR CLSVCNVTIQDTMERSMDEFTASTPADLGE EFTASTPADLGEAGRLRKKADIATSKTTTR R S M G R L 3 1 0 2 0 0 2 2 0 0 1 0 1 1 1 2 2 0 0 0 0 0 18 0 1853.8102 A8K273;B2RTX8;Q7Z5K2 A8K273 380 397 WAPAL Wings apart-like protein homolog yes no 2 0.010761 41.644 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12194 708 12529 32127;32128 50095;50096 50096 544 2 SMDLSEYIIR KEFQEKHKKEVGKLKSMDLSEYIIRGDDEE VGKLKSMDLSEYIIRGDDEEWNEVLNKAGP K S M I R G 0 1 0 1 0 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 0 10 0 1225.6013 Q9H0A0;A0A087WV29 Q9H0A0 957 966 NAT10 N-acetyltransferase 10 yes no 2 0.00018131 88.37 2 3 1.1527 1.2179 14.698 5 Median 1.1325 1.1984 2.2874 2 0 Median 1.5404 1.2919 20.66 3 0 Median 80039000 35692000 44348000 67225000 29854000 37371000 12814000 5837200 6976900 12195 2023 12530;12531 32129;32130;32131;32132;32133 50097;50098;50099;50100;50101;50102 50099 1863 6 SMEAEMIQLQEELAAAER EEILAQAKENEKKLKSMEAEMIQLQEELAA AEMIQLQEELAAAERAKRQAQQERDELADE K S M E R A 4 1 0 0 0 2 5 0 0 1 2 0 2 0 0 1 0 0 0 0 0 0 18 0 2047.9554 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4 A0A024R1N1 1677 1694 MYH9;FLJ00279 Myosin-9 yes no 2 3.9842E-39 151.54 4 1 3.2696 3.7892 45.886 3 Plateau 3.3583 3.7252 2.4105 2 0 Median 1.9493 1.6836 NaN 1 0 Median 110230000 25094000 85137000 108480000 24566000 83914000 1750000 527810 1222200 12196 81 12532;12533 32134;32135;32136;32137;32138 50103;50104;50105;50106;50107;50108;50109 50105 69;70 7 SMEDFVTWVDSSK VGPDVVTDPAFLVTRSMEDFVTWVDSSKIK TRSMEDFVTWVDSSKIKRHVLEYNEERDDF R S M S K I 0 0 0 2 0 0 1 0 0 0 0 1 1 1 0 3 1 1 0 2 0 0 13 0 1529.6708 Q9NV31 Q9NV31 153 165 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.00015915 83.182 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3553200 0 3553200 3553200 0 3553200 0 0 0 12197 2073 12534 32139 50110 50110 1909 1 SMEEQLLVVER APESYEELRSLLLGRSMEEQLLVVERIQKC LLGRSMEEQLLVVERIQKCNHPSLAEGNKA R S M E R I 0 1 0 0 0 1 3 0 0 0 2 0 1 0 0 1 0 0 0 2 0 0 11 0 1331.6755 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 443 453 NOP14 Nucleolar protein 14 yes no 2 1.2175E-23 172.8 2 1.1841 1.2845 0.41225 2 Median 1.1841 1.2845 0.41225 2 0 Median NaN NaN NaN 0 0 Median 86028000 41161000 44866000 86028000 41161000 44866000 0 0 0 12198 790 12535 32140;32141 50111;50112;50113 50112 634 3 SMENYYQESGR DKPDVRFVIHHSMSKSMENYYQESGRAGRD SMSKSMENYYQESGRAGRDDMKADCILYYG K S M G R A 0 1 1 0 0 1 2 1 0 0 0 0 1 0 0 2 0 0 2 0 0 0 11 0 1362.551 A0A024RAV2;P46063 A0A024RAV2 394 404 RECQL ATP-dependent DNA helicase Q1 yes no 2 3.5367E-06 104.22 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4993000 0 4993000 4993000 0 4993000 0 0 0 12199 314 12536 32142 50114 50114 233 1 SMFTQALNLDSTSVR LAMVMVTTVPLVCNKSMFTQALNLDSTSVR SMFTQALNLDSTSVRHTALSLISVILKRAL K S M V R H 1 1 1 1 0 1 0 0 0 0 2 0 1 1 0 3 2 0 0 1 0 0 15 0 1668.8141 O60287 O60287 438 452 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00013426 72.958 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11297000 0 11297000 11297000 0 11297000 0 0 0 12200 1392 12537 32143;32144;32145;32146 50115;50116;50117;50118;50119 50118 1070 5 SMGGAAIAPPTSLVEK DSDEDEDYERERRKRSMGGAAIAPPTSLVE MGGAAIAPPTSLVEKDKELPRDFPYEEDSR R S M E K D 3 0 0 0 0 0 1 2 0 1 1 1 1 0 2 2 1 0 0 1 0 0 16 0 1527.7967 Q5W009;Q96I25;Q5W011;Q5W010;H0Y6J6;Q5W012 Q5W009 169 184 RBM17 Splicing factor 45 yes no 2 0.00061448 47.288 2 2.655 2.7226 NaN 1 Median 2.655 2.7226 NaN 1 0 Median NaN NaN NaN 0 0 Median 11790000 3093300 8697200 11790000 3093300 8697200 0 0 0 12201 1836 12538 32147;32148 50120;50121 50121 1691 2 SMGTLENTFEGHK DFVIPECQKKSPISKSMGTLENTFEGHKSK SKSMGTLENTFEGHKSKNKEDCDERDLLTV K S M H K S 0 0 1 0 0 0 2 2 1 0 1 1 1 1 0 1 2 0 0 0 0 0 13 0 1449.6558 Q6P0N0 Q6P0N0 695 707 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.0024142 57.532 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12202 1849 12539 32149 50122 50122 1698 1 SMLMEQDPDVAVTVR LSDPENNIKKLKELRSMLMEQDPDVAVTVR SMLMEQDPDVAVTVRKLVIVSLMELFKDIT R S M V R K 1 1 0 2 0 1 1 0 0 0 1 0 2 0 1 1 1 0 0 3 0 0 15 0 1689.8066 A8K905;Q8WTT2 A8K905 241 255 NOC3L Nucleolar complex protein 3 homolog yes no 2 1.6871E-07 95.018 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6393800 0 6393800 6393800 0 6393800 0 0 0 12203 780 12540 32150;32151;32152;32153 50123;50124;50125;50126;50127;50128;50129 50123 611;612 7 SMMNLQTK ILCNHQRAPPKTFEKSMMNLQTKIDAKKEQ PPKTFEKSMMNLQTKIDAKKEQLADARRDL K S M T K I 0 0 1 0 0 1 0 0 0 0 1 1 2 0 0 1 1 0 0 0 0 0 8 0 951.45177 P11387;B9EG90;Q9BVT2 P11387 643 650 TOP1 DNA topoisomerase 1 yes no 2 0.012954 66.429 2 2.0356 1.6472 16.427 2 Median NaN NaN NaN 0 0 Median 2.0356 1.6472 16.427 2 0 Median 5680200 2096100 3584100 0 0 0 5680200 2096100 3584100 12204 1470 12541 32154;32155 50130;50131 50131 2 SMMQDREDQSILCTGESGAGK EMPPHIYAITDTAYRSMMQDREDQSILCTG EDQSILCTGESGAGKTENTKKVIQYLAYVA R S M G K T 1 1 0 2 1 2 2 3 0 1 1 1 2 0 0 3 1 0 0 0 0 0 21 1 2298.9879 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1 A0A024R1N1 160 180 MYH9 Myosin-9 yes no 3 1.7557E-11 92.932 1 2.3623 2.6878 NaN 1 Median 2.3623 2.6878 NaN 1 0 Median NaN NaN NaN 0 0 Median 18916000 4541700 14374000 18916000 4541700 14374000 0 0 0 12205 81 12542 32156 50132 50132 71;72 1 SMQDVVEDFK EALQVDGGRLEAELRSMQDVVEDFKNKYED EAELRSMQDVVEDFKNKYEDEINHRTAAEN R S M F K N 0 0 0 2 0 1 1 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 10 0 1196.5383 CON__Q3KNV1;P08729 CON__Q3KNV1 168 177 KRT7 Keratin, type II cytoskeletal 7 no no 2 6.889E-06 102.06 2 3 1.8803 2.0942 55.144 3 Plateau 1.8803 2.1007 NaN 1 0 Median 1.0102 0.80879 2.8552 2 0 Median 137560000 34069000 103490000 128720000 30548000 98172000 8837400 3521300 5316000 + 12206 1171 12543;12544 32157;32158;32159;32160;32161 50133;50134;50135;50136;50137;50138 50134 890 6 SMQVVPLDK QEQMCNVGVSMGLTRSMQVVPLDKQITIID SMGLTRSMQVVPLDKQITIIDSPSFIVSPL R S M D K Q 0 0 0 1 0 1 0 0 0 0 1 1 1 0 1 1 0 0 0 2 0 0 9 0 1015.5372 A0A024R2Z6;Q9BVP2 A0A024R2Z6 279 287 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.042602 40.994 1 1.4533 1.149 NaN 1 Median NaN NaN NaN 0 0 Median 1.4533 1.149 NaN 1 0 Median 2320500 1111300 1209200 0 0 0 2320500 1111300 1209200 12207 125 12545 32162 50139;50140 50140 2 SMSDVSAEDVQNLR FSRLFQKIYGENGSKSMSDVSAEDVQNLRQ KSMSDVSAEDVQNLRQLRYEEMQKIKSQLK K S M L R Q 1 1 1 2 0 1 1 0 0 0 1 0 1 0 0 3 0 0 0 2 0 0 14 0 1549.7042 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424;E9PLU6;E9PK58;E9PJ10 A0A1P7ZIM8 318 331 LMO7 LIM domain only protein 7 yes no 2 6.0335E-16 128.01 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27177000 0 27177000 24633000 0 24633000 2544100 0 2544100 12208 640 12546 32163;32164;32165;32166 50141;50142;50143;50144 50141 497 4 SMVDELFAEIVR QEWGCPFMETSAKSKSMVDELFAEIVRQMN KSKSMVDELFAEIVRQMNYSSLPEKQDQCC K S M V R Q 1 1 0 1 0 0 2 0 0 1 1 0 1 1 0 1 0 0 0 2 0 0 12 0 1407.7068 Q9Y3L5;A0A087X2C3 Q9Y3L5 151 162 RAP2C Ras-related protein Rap-2c yes no 2 0.0006131 72.006 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1412500 0 1412500 1412500 0 1412500 0 0 0 12209 2138 12547 32167 50145 50145 1978 1 SMVEEGTGLR PKTKLKISYKDALDRSMVEEGTGLRLLEAA DALDRSMVEEGTGLRLLEAAAQSTKGYYSP R S M L R L 0 1 0 0 0 0 2 2 0 0 1 0 1 0 0 1 1 0 0 1 0 0 10 0 1077.5125 Q15149;D3DWL0;Q96IE3 Q15149 4590 4599 PLEC;PLEC1 Plectin yes no 2 0.012982 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12210 1754 12548 32168 50146 50146 1618 1 SMVPVQVQLDVPVVK RDNNGVIGLLEPMKKSMVPVQVQLDVPVVK SMVPVQVQLDVPVVKVASGNDHLVMLTADG K S M V K V 0 0 0 1 0 2 0 0 0 0 1 1 1 0 2 1 0 0 0 6 0 0 15 0 1636.9222 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 162 176 RCC1 Regulator of chromosome condensation yes no 2 3.6271E-22 141.13 2 4 0.8967 0.92406 33.194 5 Median 0.86555 0.95849 5.1729 2 0 Median 1.1228 0.8812 42.003 3 0 Median 176990000 103700000 73292000 105150000 56849000 48301000 71843000 46852000 24991000 12211 550 12549;12550 32169;32170;32171;32172;32173;32174 50147;50148;50149;50150;50151;50152;50153;50154;50155;50156;50157 50150 405 11 SMVTEEFNGSDWEK GFGIAPHCLDEGTVRSMVTEEFNGSDWEKA RSMVTEEFNGSDWEKAMKEHKTIKNMSKE_ R S M E K A 0 0 1 1 0 0 3 1 0 0 0 1 1 1 0 2 1 1 0 1 0 0 14 0 1657.693 Q7Z7K6 Q7Z7K6 248 261 CENPV Centromere protein V yes yes 2 1.1945E-14 130.01 2 4 1.2681 1.2807 24.225 6 Median 1.2522 1.2807 5.2728 2 0 Median 1.6346 1.3082 30.99 4 0 Median 65421000 28766000 36655000 44931000 20216000 24715000 20490000 8550200 11940000 12212 1882 12551;12552 32175;32176;32177;32178;32179;32180 50158;50159;50160;50161;50162;50163;50164;50165;50166 50161 1726 9 SMYEEEINETR ENRCQSLTEDLEFRKSMYEEEINETRRKHE EFRKSMYEEEINETRRKHETRLVEVDSGRQ K S M T R R 0 1 1 0 0 0 4 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 11 0 1399.5926 P20700;E9PBF6;A0A0D9SFE5;Q6DC98 P20700 210 220 LMNB1 Lamin-B1 yes no 2 6.3391E-07 103.7 3 1.2804 1.2713 NaN 1 Median 1.2804 1.2713 NaN 1 0 Median NaN NaN NaN 0 0 Median 16092000 3817400 12275000 16092000 3817400 12275000 0 0 0 12213 1502 12553 32181;32182;32183 50167;50168;50169 50169 1264 3 SNAVQEADSELK TPHSWEEELNHYALKSNAVQEADSELKQFS ALKSNAVQEADSELKQFSKGETEQDLEADF K S N L K Q 2 0 1 1 0 1 2 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1289.6099 Q5VZL5;H7C1I7 Q5VZL5 1116 1127 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.0036902 56.225 1 2 3.6053 2.8424 NaN 1 Median NaN NaN NaN 0 0 Median 3.6053 2.8424 NaN 1 0 Median 10577000 1679900 8896700 4314300 0 4314300 6262400 1679900 4582400 12214 1835 12554 32184;32185;32186 50170;50171;50172;50173 50171 4 SNCIPQATALSK EGPSFLQMRIKHLLKSNCIPQATALSKLCA LLKSNCIPQATALSKLCAESKEISNVSSFQ K S N S K L 2 0 1 0 1 1 0 0 0 1 1 1 0 0 1 2 1 0 0 0 0 0 12 0 1288.6445 Q13129 Q13129 225 236 RLF Zinc finger protein Rlf yes yes 2 0.038017 44.612 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5170000 5170000 0 5170000 5170000 0 0 0 0 12215 1705 12555 32187 50174 50174 1 SNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGR ESGVHRPHVAGIHGRSNDGAYSLVLAGGYE VDHGNFFTYTGSGGRDLSGNKRTAEQSCDQ R S N G R D 2 1 2 4 0 0 1 7 1 0 2 0 0 2 0 3 2 0 3 2 0 0 32 0 3340.4545 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 466 497 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.045996 8.9128 2 0.78131 0.65923 19.111 2 Median NaN NaN NaN 0 0 Median 0.78131 0.65923 19.111 2 0 Median 8529000 4807100 3721900 0 0 0 8529000 4807100 3721900 12216 406 12556 32188;32189 50175;50176 50175 2 SNEDQSMGNWQIK EEVDEEGKFVRLRNKSNEDQSMGNWQIKRQ NKSNEDQSMGNWQIKRQNGDDPLLTYRFPP K S N I K R 0 0 2 1 0 2 1 1 0 1 0 1 1 0 0 2 0 1 0 0 0 0 13 0 1535.6675 P02545;W8QEH3;Q5I6Y5;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 458 470 LMNA Prelamin-A/C;Lamin-A/C yes no 2 2.1788E-14 136.02 2 3 1.2156 1.3168 33.843 5 Median 1.1991 1.3399 2.4662 2 0 Median 1.5615 1.2634 44.338 3 0 Median 148570000 64822000 83745000 139070000 60521000 78552000 9493500 4300500 5193000 12217 1440 12557;12558 32190;32191;32192;32193;32194 50177;50178;50179;50180;50181;50182 50178 1139 6 SNELGDVGVHCVLQGLQTPSCK SALRVNPALAELNLRSNELGDVGVHCVLQG GVHCVLQGLQTPSCKIQKLSLQNCCLTGAG R S N C K I 0 0 1 1 2 2 1 3 1 0 3 1 0 0 1 2 1 0 0 3 0 0 22 0 2397.1417 A0A024RC87;A0A140VJT8;P13489;E9PMN0;E9PIK5;E9PMJ3;E9PLZ3;E9PIM9 A0A024RC87 60 81 RNH1 Ribonuclease inhibitor yes no 3 0.0027009 53.779 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4987900 0 4987900 4987900 0 4987900 0 0 0 12218 355 12559 32195;32196 50183;50184 50183 2 SNESVDIQDQEEK EEGSRKKRSGKWKNKSNESVDIQDQEEKVV NKSNESVDIQDQEEKVVKQECIKAENQSHD K S N E K V 0 0 1 2 0 2 3 0 0 1 0 1 0 0 0 2 0 0 0 1 0 0 13 0 1519.6638 Q5UIP0 Q5UIP0 1576 1588 RIF1 Telomere-associated protein RIF1 yes yes 2 0.00020549 90.913 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3187200 0 3187200 3187200 0 3187200 0 0 0 12219 1829 12560 32197;32198;32199;32200 50185;50186;50187;50188 50187 4 SNFSLAILNVGAPAAGMNAAVR NIYKLLAHQKPPKEKSNFSLAILNVGAPAA LNVGAPAAGMNAAVRSAVRTGISHGHTVYV K S N V R S 6 1 3 0 0 0 0 2 0 1 2 0 1 1 1 2 0 0 0 2 0 0 22 0 2143.1208 P17858;Q7L2M7;Q9BSP4;Q59GI2 P17858 398 419 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 2 3.4065E-07 53.001 2 1.222 1.2837 NaN 1 Median 1.222 1.2837 NaN 1 0 Median NaN NaN NaN 0 0 Median 18202000 5441300 12761000 18202000 5441300 12761000 0 0 0 12220 1495 12561 32201;32202 50189;50190;50191 50189 1250 3 SNFSNSADDIK ENNKPREKSESNKRKSNFSNSADDIKSKKK NKRKSNFSNSADDIKSKKKREQSNDIARGF K S N I K S 1 0 2 2 0 0 0 0 0 1 0 1 0 1 0 3 0 0 0 0 0 0 11 0 1196.5309 V9HWG0;P45973;Q6I9T7 V9HWG0 92 102 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 3.2465E-17 160.36 3 2 0.92984 0.82114 10.297 5 Median 0.74979 0.84847 10.911 3 0 Median 0.93094 0.78474 1.2157 2 0 Median 360860000 201200000 159660000 238000000 136570000 101430000 122860000 64630000 58228000 12221 1568 12562 32203;32204;32205;32206;32207 50192;50193;50194;50195;50196;50197;50198;50199;50200;50201;50202;50203 50196 12 SNGLIHSANVR LQARLFPGLAIKIQRSNGLIHSANVRTVNL KIQRSNGLIHSANVRTVNLEKSCVSVEWAE R S N V R T 1 1 2 0 0 0 0 1 1 1 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1166.6156 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;Q5JR91 A8K3S3 22 32 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2;3 2.2591E-05 103.91 2 0.825 0.89998 10.903 2 Median 0.825 0.89998 10.903 2 0 Median NaN NaN NaN 0 0 Median 68547000 32441000 36106000 68547000 32441000 36106000 0 0 0 12222 626 12563 32208;32209 50204;50205 50204 2 SNHLLEDSLK DKVETEQAEIQELKKSNHLLEDSLKELQLL QELKKSNHLLEDSLKELQLLSETLSLEKKE K S N L K E 0 0 1 1 0 0 1 0 1 0 3 1 0 0 0 2 0 0 0 0 0 0 10 0 1154.5932 P49454 P49454 933 942 CENPF Centromere protein F yes yes 2 0.00090659 79.311 1 1 1.3352 1.2424 3.9323 2 Median 1.1603 1.2083 NaN 1 0 Median 1.5364 1.2774 NaN 1 0 Median 18416000 8165000 10251000 16854000 7552200 9302000 1561700 612820 948880 12223 1581 12564 32210;32211 50206;50207 50206 2 SNIDALLSR SSELQAIKTELTQIKSNIDALLSRLEQIAA ELTQIKSNIDALLSRLEQIAAEQKANPDGK K S N S R L 1 1 1 1 0 0 0 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 9 0 987.53491 A8K4T9;Q53GL6;Q5QPL9;Q9UKM9;Q5QPM0 A8K4T9 183 191 RALY RNA-binding protein Raly yes no 2 1.0147E-07 139.38 2 2 0.73729 0.717 50.094 4 Median 1.0019 1.1274 6.5891 2 0 Median 0.57489 0.47464 0.9258 2 0 Median 237730000 129360000 108370000 205290000 108590000 96700000 32441000 20773000 11668000 12224 741 12565 32212;32213;32214;32215 50208;50209;50210;50211;50212;50213;50214 50214 7 SNIHSSVMASPGGLSAVR KAITPKRLLTSITTKSNIHSSVMASPGGLS HSSVMASPGGLSAVRTSNFALVGSYTLSLS K S N V R T 2 1 1 0 0 0 0 2 1 1 1 0 1 0 1 5 0 0 0 2 0 0 18 0 1768.889 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1C2;H7C3S1 B4DSL6 795 812 ANLN Actin-binding protein anillin yes no 2 0.0043794 44.457 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12225 294 12566 32216 50215 50215 213 1 SNILLLGPTGSGK GEVLDSSHDDIKLEKSNILLLGPTGSGKTL EKSNILLLGPTGSGKTLLAQTLAKCLDVPF K S N G K T 0 0 1 0 0 0 0 3 0 1 3 1 0 0 1 2 1 0 0 0 0 0 13 0 1255.7136 Q9H072;A0A024R5X7;O76031 Q9H072 287 299 DKFZp586J151;CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2 0.0012305 62.14 2 1.3699 1.4561 NaN 1 Median 1.3699 1.4561 NaN 1 0 Median NaN NaN NaN 0 0 Median 21928000 10398000 11530000 21928000 10398000 11530000 0 0 0 12226 191 12567 32217;32218 50216;50217;50218 50216 3 SNILSNEMK QKEKIHEDTKEINEKSNILSNEMKAKNKDV KEINEKSNILSNEMKAKNKDVKDTEKKLNK K S N M K A 0 0 2 0 0 0 1 0 0 1 1 1 1 0 0 2 0 0 0 0 0 0 9 0 1034.5066 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 355 363 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 4.7575E-08 139.74 2 0.99735 1.1303 5.9086 2 Median 0.99735 1.1303 5.9086 2 0 Median NaN NaN NaN 0 0 Median 280050000 135530000 144520000 280050000 135530000 144520000 0 0 0 12227 2070 12568 32219;32220 50219;50220;50221;50222 50219 1907 4 SNILVFK ALLAYGIGQDSPTGKSNILVFKLGGTSLSL GQDSPTGKSNILVFKLGGTSLSLSVMEVNS K S N F K L 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 7 0 819.48544 Q0VDF9 Q0VDF9 191 197 HSPA14 Heat shock 70 kDa protein 14 yes yes 2 0.041494 58.981 1 1.9104 1.9778 NaN 1 Median 1.9104 1.9778 NaN 1 0 Median NaN NaN NaN 0 0 Median 9777500 3579700 6197700 9777500 3579700 6197700 0 0 0 12228 1697 12569 32221 50223 50223 1 SNLAYDIVQLPTGLTGIK FHGRAFSDPFVEAEKSNLAYDIVQLPTGLT AYDIVQLPTGLTGIKVTYMEEERNFTTEQV K S N I K V 1 0 1 1 0 1 0 2 0 2 3 1 0 0 1 1 2 0 1 1 0 0 18 0 1902.0462 O14992;A0A087WTS8;A0A087WYC1;Q59GF8;V9HW33;B4DH02;P34932;Q7KYN0 O14992 85 102 HS24/p52;HSPA4;HEL-S-5a;HS24/P52 Heat shock 70 kDa protein 4 yes no 2 1.7065E-05 74.678 2 1.8507 1.8702 3.938 2 Median 1.8507 1.8702 3.938 2 0 Median NaN NaN NaN 0 0 Median 16290000 6269000 10021000 16290000 6269000 10021000 0 0 0 12229 404 12570 32222;32223 50224;50225;50226 50224 3 SNLEGSLK EKHRKLDDHRSRDHRSNLEGSLKDRSHSDH HRSRDHRSNLEGSLKDRSHSDHRSHSDHRL R S N L K D 0 0 1 0 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 0 0 0 8 0 846.4447 O14646;B3KT33 O14646 1617 1624 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 2 0.015554 61.679 1 0.81376 0.8255 NaN 1 Median 0.81376 0.8255 NaN 1 0 Median NaN NaN NaN 0 0 Median 13423000 7482100 5940900 13423000 7482100 5940900 0 0 0 12230 1366 12571 32224 50227 50227 1 SNLGSVVLQLK YKTEMQDNTYPEILRSNLGSVVLQLKKLGI EILRSNLGSVVLQLKKLGIDDLVHFDFMDP R S N L K K 0 0 1 0 0 1 0 1 0 0 3 1 0 0 0 2 0 0 0 2 0 0 11 0 1156.6816 O43143;B4E0S6 O43143 505 515 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 6.4917E-08 115.06 2 2 1.1458 1.1127 14.897 4 Median 1.1013 1.2402 0.12102 2 0 Median 1.2142 0.96319 5.1757 2 0 Median 221050000 98548000 122500000 182150000 82311000 99844000 38892000 16237000 22655000 12231 1379 12572 32225;32226;32227;32228 50228;50229;50230;50231;50232;50233;50234 50231 7 SNLLWDTGVFR SYTWLCYEVKIKRGRSNLLWDTGVFRGQVY KRGRSNLLWDTGVFRGQVYFEPQYHAEMCF R S N F R G 0 1 1 1 0 0 0 1 0 0 2 0 0 1 0 1 1 1 0 1 0 0 11 0 1306.667 W0HJ78;B0QYD3;Q9UH17;Q6ICH2;B2CML4;Q96AK3 W0HJ78 46 56 APOBEC3B;bK150C2.9;APOBEC3DE;APOBEC3D DNA dC->dU-editing enzyme APOBEC-3B;DNA dC->dU-editing enzyme APOBEC-3D no no 2 0.0040722 58.676 1 0.42765 0.42783 NaN 1 Median 0.42765 0.42783 NaN 1 0 Median NaN NaN NaN 0 0 Median 9080500 6003600 3076900 9080500 6003600 3076900 0 0 0 12232 807;823 12573 32229 50235 50235 1 SNLMDAISFVLGEK FQRFTAIIGPNGSGKSNLMDAISFVLGEKT KSNLMDAISFVLGEKTSNLRVKTLRDLIHG K S N E K T 1 0 1 1 0 0 1 1 0 1 2 1 1 1 0 2 0 0 0 1 0 0 14 0 1522.7701 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709;Q68EN4;H0Y7K8;Q5H934;Q7Z4C6 Q14683 39 52 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00012703 62.088 3 1.0561 1.0577 16.806 3 Median 1.0561 1.0577 16.806 3 0 Median NaN NaN NaN 0 0 Median 17466000 8201100 9264600 17466000 8201100 9264600 0 0 0 12233 1739 12574 32230;32231;32232 50236;50237;50238 50236 1574 3 SNLMVATGDLAIR LLFTMLEKSPLPIVRSNLMVATGDLAIRFP VRSNLMVATGDLAIRFPNLVDPWTPHLYAR R S N I R F 2 1 1 1 0 0 0 1 0 1 2 0 1 0 0 1 1 0 0 1 0 0 13 0 1359.718 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1073 1085 NCAPD2 Condensin complex subunit 1 yes no 2 2.5229E-31 174.57 2 4 1.2247 1.2541 18.358 6 Median 1.2247 1.4305 2.9409 2 0 Median 1.2857 1.0845 16.184 4 0 Median 617590000 283340000 334250000 554120000 255430000 298690000 63469000 27906000 35563000 12234 908 12575;12576 32233;32234;32235;32236;32237;32238 50239;50240;50241;50242;50243;50244;50245;50246;50247;50248;50249 50242 747 11 SNLVDNTNQVEVLQR KEDRAAQSLLNKLIRSNLVDNTNQVEVLQR SNLVDNTNQVEVLQRDPNSPLYSVKSFEEL R S N Q R D 0 1 3 1 0 2 1 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 15 0 1727.8802 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;B4DS24;Q9HBZ9;Q7Z4W5;H3BN59;H3BMQ5;H3BTB3 I3L0H8 67 81 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 2.8411E-31 161.93 2 2 2.231 2.1443 44.277 4 Median 2.847 3.1214 5.009 2 0 Median 1.725 1.4563 6.6348 2 0 Median 104220000 26825000 77391000 92013000 22469000 69544000 12204000 4356900 7847000 12235 593 12577 32239;32240;32241;32242 50250;50251;50252;50253;50254;50255;50256 50251 7 SNLYIAESTSGR EAQDMAVRDHNVEFRSNLYIAESTSGRGQC EFRSNLYIAESTSGRGQCLKRIRYHGRGRF R S N G R G 1 1 1 0 0 0 1 1 0 1 1 0 0 0 0 3 1 0 1 0 0 0 12 0 1296.631 E7ESL0;J3KQY1;Q9NWU5 E7ESL0 138 149 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 0.00060985 68.44 2 1 1.2073 1.2907 25.564 3 Plateau 1.2073 1.2749 13.647 2 0 Median 0.97274 0.84605 NaN 1 0 Median 49814000 21382000 28432000 48019000 20491000 27528000 1794800 891000 903840 12236 1222 12578 32243;32244;32245 50257;50258;50259;50260;50261;50262;50263 50260 7 SNMDNMFESYINNLR LETKWSLLQQQKTARSNMDNMFESYINNLR SNMDNMFESYINNLRRQLETLGQEKLKLEA R S N L R R 0 1 4 1 0 0 1 0 0 1 1 0 2 1 0 2 0 0 1 0 0 0 15 0 1846.7978 CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8W1U3;F8VP67 CON__P05787 134 148 KRT8 Keratin, type II cytoskeletal 8 yes no 2 4.6635E-10 115.14 2 1 2.3761 2.7126 92.674 3 Plateau 2.3859 2.6899 1.1871 2 0 Median 0.64171 0.54032 NaN 1 0 Median 176430000 43562000 132870000 171850000 40868000 130980000 4583900 2694300 1889600 + 12237 1156 12579 32246;32247;32248 50264;50265;50266;50267;50268 50266 869;870 5 SNMFFGLTPLYGVR GSFKRRYPRRSARARSNMFFGLTPLYGVRS RSNMFFGLTPLYGVRSYGEEDIPFYSSSTG R S N V R S 0 1 1 0 0 0 0 2 0 0 2 0 1 2 1 1 1 0 1 1 0 0 14 0 1600.8072 Q03164 Q03164 2625 2638 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 7.018E-05 77.64 1 1.0671 1.1004 NaN 1 Median 1.0671 1.1004 NaN 1 0 Median NaN NaN NaN 0 0 Median 6241000 2710300 3530700 6241000 2710300 3530700 0 0 0 12238 1680 12580 32249 50269 50269 1493 1 SNMGHPEPASGLAALAK LCATRQEPLLIGSTKSNMGHPEPASGLAAL MGHPEPASGLAALAKVLLSLEHGLWAPNLH K S N A K V 4 0 1 0 0 0 1 2 1 0 2 1 1 0 2 2 0 0 0 0 0 0 17 0 1649.8195 A0A0U1RQF0;P49327 A0A0U1RQF0 327 343 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.018269 41.186 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12305000 0 12305000 12305000 0 12305000 0 0 0 12239 587 12581 32250 50270 50270 441 1 SNMSPHGLPAR KMPTRLDGERPGPNRSNMSPHGLPARSSGS GPNRSNMSPHGLPARSSGSPKFAMKTRQAF R S N A R S 1 1 1 0 0 0 0 1 1 0 1 0 1 0 2 2 0 0 0 0 0 0 11 0 1165.5662 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7 E7ESY4 446 456 MTA1 Metastasis-associated protein MTA1 yes no 3 0.003655 46.844 1 1.1456 1.1772 NaN 1 Median 1.1456 1.1772 NaN 1 0 Median NaN NaN NaN 0 0 Median 4937600 2320800 2616800 4937600 2320800 2616800 0 0 0 12240 1223 12582 32251 50271 50271 932 1 SNNIINETTTR KDKEKVEEFKSIPAKSNNIINETTTRNNAL IPAKSNNIINETTTRNNALEKEKEKEEKKL K S N T R N 0 1 3 0 0 0 1 0 0 2 0 0 0 0 0 1 3 0 0 0 0 0 11 0 1261.6262 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5;Q6NSG3;Q58F29 Q9NTJ3 435 445 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.3193E-41 237.51 2 2 1.2217 1.231 25.844 4 Median 0.8429 0.98717 0.25068 2 0 Median 1.7805 1.5443 1.1044 2 0 Median 763730000 389820000 373910000 623120000 339410000 283710000 140620000 50411000 90205000 12241 2070 12583 32252;32253;32254;32255 50272;50273;50274;50275;50276;50277;50278 50273 7 SNNVEMDWVLK KDRETMGHRYVEVFKSNNVEMDWVLKHTGP EVFKSNNVEMDWVLKHTGPNSPDTANDGFV K S N L K H 0 0 2 1 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 2 0 0 11 0 1333.6336 E9PCY7;G8JLB6;P31943;D6RIU0;D6RBM0;E7EQJ0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E5RGV0;E5RGH4;H0YAQ2 E9PCY7 88 98 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 0.0003599 85.355 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17635000 5681500 11954000 17635000 5681500 11954000 0 0 0 12242 1231 12584 32256;32257 50279;50280 50280 946 2 SNPGGFGIAPHCLDEGTVR TFCKRCGVQSFYTPRSNPGGFGIAPHCLDE GFGIAPHCLDEGTVRSMVTEEFNGSDWEKA R S N V R S 1 1 1 1 1 0 1 4 1 1 1 0 0 1 2 1 1 0 0 1 0 0 19 0 1982.9269 Q7Z7K6 Q7Z7K6 229 247 CENPV Centromere protein V yes yes 2;3 3.1505E-06 78.069 5 2 1.2139 1.3893 13.54 5 Median 1.1883 1.3604 14.501 3 0 Median 1.7128 1.4861 0.49942 2 0 Median 461570000 207710000 253860000 315400000 152810000 162580000 146170000 54897000 91277000 12243 1882 12585 32258;32259;32260;32261;32262;32263;32264 50281;50282;50283;50284;50285;50286;50287;50288;50289;50290;50291;50292 50284 12 SNPSVFVIFQK YTSPPPQFDSCVDTRSNPSVFVIFQKDQVY VDTRSNPSVFVIFQKDQVYPQYVIEYTEDK R S N Q K D 0 0 1 0 0 1 0 0 0 1 0 1 0 2 1 2 0 0 0 2 0 0 11 0 1264.6816 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 872 882 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.00043239 78.934 2 1.5214 1.5166 7.8844 2 Median 1.5214 1.5166 7.8844 2 0 Median NaN NaN NaN 0 0 Median 36565000 14197000 22368000 36565000 14197000 22368000 0 0 0 12244 1873 12586 32265;32266 50293;50294;50295 50295 3 SNPYYIVK KNDVMNLLESAGFSRSNPYYIVKQGKINQM ESAGFSRSNPYYIVKQGKINQMATAPDSQR R S N V K Q 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 2 1 0 0 8 0 982.51238 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 133 140 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.028561 53.166 1 1.08 1.1602 NaN 1 Median 1.08 1.1602 NaN 1 0 Median NaN NaN NaN 0 0 Median 21471000 10256000 11215000 21471000 10256000 11215000 0 0 0 12245 803 12587 32267 50296 50296 1 SNQQLENDLNLMDIK LDLMKMREEVITLIRSNQQLENDLNLMDIK SNQQLENDLNLMDIKIGLLVKNKITLQDVV R S N I K I 0 0 3 2 0 2 1 0 0 1 3 1 1 0 0 1 0 0 0 0 0 0 15 0 1773.8567 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;H0YLE8;B4E2M0;Q6P1N4;Q96PA3 A4QPB0 902 916 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00031948 78.705 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12246 352 12588 32268 50297 50297 260 1 SNQQLVDIIEK FQGTKVFVMPNGMLKSNQQLVDIIEKVKPE GMLKSNQQLVDIIEKVKPEIRLLIEKCNTE K S N E K V 0 0 1 1 0 2 1 0 0 2 1 1 0 0 0 1 0 0 0 1 0 0 11 0 1285.6878 K7ENH2;B3KQ25;K7ESG5;K9J957;V9HWJ8;Q6FHK7;A0A024R203;P61289;K7EMD0;K7EPX6;K7EKR3 K7ENH2 111 121 PSME3;HEL-S-283 Proteasome activator complex subunit 3 yes no 2 5.7514E-08 110.38 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7800400 0 7800400 7800400 0 7800400 0 0 0 12247 99 12589 32269 50298 50298 1 SNQQNLGTIK TGTPYMLYKDSCNRKSNQQNLGTIKCSNLC SCNRKSNQQNLGTIKCSNLCTEIVEYTSKD K S N I K C 0 0 2 0 0 2 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 10 0 1101.5778 B4DNN4;Q53GZ5;P23921;B4E0I8;B4DS95;B4DXD1;E9PL69;B4DXB0 B4DNN4 385 394 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 5.0594E-08 115.71 1 2.1266 2.1956 NaN 1 Median 2.1266 2.1956 NaN 1 0 Median NaN NaN NaN 0 0 Median 12787000 3825600 8961600 12787000 3825600 8961600 0 0 0 12248 1014 12590 32270 50299 50299 1 SNRDELELELAENRK QFQMRRLKKQLADERSNRDELELELAENRK SNRDELELELAENRKLLTEKDAQIAMMQQR R S N R K L 1 2 2 1 0 0 4 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 15 2 1814.9123 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 228 242 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 0.0058633 48.899 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2421300 0 2421300 0 0 0 2421300 0 2421300 12249 186;1747;718 12591 32271 50300 50300 1 SNSEVEDVGPTSHNR NKISDTKKKQGMKKRSNSEVEDVGPTSHNR SNSEVEDVGPTSHNRKKARWDTLEPLDTGL R S N N R K 0 1 2 1 0 0 2 1 1 0 0 0 0 0 1 3 1 0 0 2 0 0 15 0 1626.7234 Q13206;B4DKX3 Q13206 829 843 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.00014377 79.82 2 1.0668 1.1162 18.086 2 Median 1.0668 1.1162 18.086 2 0 Median NaN NaN NaN 0 0 Median 10084000 4619900 5463800 10084000 4619900 5463800 0 0 0 12250 1708 12592 32272;32273 50301;50302 50302 2 SNSGFLR WKCYITFCLERFTKKSNSGFLRGKRLERTM CLERFTKKSNSGFLRGKRLERTMTVFRKAH K S N L R G 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 2 0 0 0 0 0 0 7 0 779.3926 B3KQ21;Q9NYH9;B3KX32 B3KQ21 341 347 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.032923 78.616 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28969000 28969000 0 28969000 28969000 0 0 0 0 12251 925 12593 32274 50303 50303 1 SNSNAVSAIPINK PDQTVIKKGPVSLSKSNSNAVSAIPINKDN SKSNSNAVSAIPINKDNLFGGVVNPNEVFC K S N N K D 2 0 3 0 0 0 0 0 0 2 0 1 0 0 1 3 0 0 0 1 0 0 13 0 1313.6939 Q96SH1;P05549;C9JXZ2;H7C5E5;C1K3N0 Q96SH1 187 199 TFAP2A Transcription factor AP-2-alpha yes no 2 0.019588 47.844 2 1.1024 0.87017 NaN 1 Median NaN NaN NaN 0 0 Median 1.1024 0.87017 NaN 1 0 Median 3067200 1476000 1591100 0 0 0 3067200 1476000 1591100 12252 1448 12594 32275;32276 50304;50305 50305 2 SNSPLPVPPSK KGDIKSKSRSRSQSRSNSPLPVPPSKARSV SQSRSNSPLPVPPSKARSVSPPPKRATSRS R S N S K A 0 0 1 0 0 0 0 0 0 0 1 1 0 0 4 3 0 0 0 1 0 0 11 0 1121.6081 V9HVZ0;A8K588;Q13247 V9HVZ0 301 311 HEL-S-91;SRSF6 Serine/arginine-rich splicing factor 6 yes no 2 0.016171 54.27 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16274000 0 16274000 16274000 0 16274000 0 0 0 12253 748 12595 32277;32278 50306;50307 50306 2 SNSQVPQQSHFTK LSGLTLSPEQGTNEKSNSQVPQQSHFTKTT EKSNSQVPQQSHFTKTTTGPPHLVPPQPLP K S N T K T 0 0 1 0 0 3 0 0 1 0 0 1 0 1 1 3 1 0 0 1 0 0 13 0 1486.7165 A0A024R0F1;Q9UNY4 A0A024R0F1 469 481 TTF2 Transcription termination factor 2 yes no 2;3 3.5939E-60 182.92 2 4 1.5984 1.2584 3.7315 4 Median NaN NaN NaN 0 0 Median 1.5984 1.2584 3.7315 4 0 Median 33827000 6751700 27075000 16371000 0 16371000 17456000 6751700 10705000 12254 44 12596 32279;32280;32281;32282;32283;32284 50308;50309;50310;50311;50312;50313;50314 50309 7 SNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETR YLPVNESFGFTADLRSNTGGQAFPQCVFDH FDNSSRPSQVVAETRKRKGLKEGIPALDNF R S N T R K 2 2 2 3 1 4 1 3 1 1 1 0 0 3 4 4 2 1 0 3 0 0 38 1 4243.977 P13639;Q8TA90;B4DPU3 P13639 802 839 EEF2 Elongation factor 2 yes no 4 0.013314 15.221 2 2.0833 1.8307 2.1816 2 Median NaN NaN NaN 0 0 Median 2.0833 1.8307 2.1816 2 0 Median 11717000 2969800 8747200 0 0 0 11717000 2969800 8747200 12255 1478 12597 32285;32286 50315;50316;50317;50318 50315 4 SNTLPISLQSIR EAANGNLDFVLSFLKSNTLPISLQSIRSSL FLKSNTLPISLQSIRSSLLLGFRRSMNINL K S N I R S 0 1 1 0 0 1 0 0 0 2 2 0 0 0 1 3 1 0 0 0 0 0 12 0 1327.746 E5KNY5;P42704;B4DSR0 E5KNY5 530 541 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.017123 41.704 2 1.3162 1.111 4.7053 2 Median NaN NaN NaN 0 0 Median 1.3162 1.111 4.7053 2 0 Median 11807000 5191700 6615100 0 0 0 11807000 5191700 6615100 12256 1207 12598 32287;32288 50319;50320 50319 2 SNTSLPPLPFK GDVVSTRDPVKSQSKSNTSLPPLPFKRGGG SQSKSNTSLPPLPFKRGGGKDGSVTGTKRL K S N F K R 0 0 1 0 0 0 0 0 0 0 2 1 0 1 3 2 1 0 0 0 0 0 11 0 1199.655 P46013 P46013 2987 2997 MKI67 Antigen KI-67 yes yes 2 0.0080807 53.327 2 2 3.2113 2.7784 NaN 1 Median NaN NaN NaN 0 0 Median 3.2113 2.7784 NaN 1 0 Median 485870000 293940000 191930000 270720000 270720000 0 215150000 23221000 191930000 12257 1569 12599 32289;32290;32291;32292 50321;50322;50323;50324;50325 50324 5 SNTVVIMNMQGQIVR ILLPKNPEHFVVCNRSNTVVIMNMQGQIVR SNTVVIMNMQGQIVRSFSSGKREGGDFVCC R S N V R S 0 1 2 0 0 2 0 1 0 2 0 0 2 0 0 1 1 0 0 3 0 0 15 0 1688.8702 A0MNN4;Q2TAY7 A0MNN4 419 433 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 2 0.002339 48.998 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2825400 0 2825400 2825400 0 2825400 0 0 0 12258 642 12600 32293 50326 50326 500;501 1 SNVESALSHGLK NCELSDHCIKLQKRKSNVESALSHGLKSLN KRKSNVESALSHGLKSLNRKSPSHSSSSED K S N L K S 1 0 1 0 0 0 1 1 1 0 2 1 0 0 0 3 0 0 0 1 0 0 12 0 1240.6412 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50 A0A024R250 438 449 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 5.9217E-20 135.99 1 2 1.357 1.0703 NaN 1 Median NaN NaN NaN 0 0 Median 1.357 1.0703 NaN 1 0 Median 35611000 2387200 33223000 27106000 0 27106000 8504000 2387200 6116800 12259 104 12601 32294;32295;32296 50327;50328;50329 50327 3 SNVIDSMLFVFGYR HKRFSCIIGPNGSGKSNVIDSMLFVFGYRA KSNVIDSMLFVFGYRAQKIRSKKLSVLIHN K S N Y R A 0 1 1 1 0 0 0 1 0 1 1 0 1 2 0 2 0 0 1 2 0 0 14 0 1646.8127 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 120 133 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein no no 2 1.107E-05 91.855 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35132000 3814600 31317000 31317000 0 31317000 3814600 3814600 0 12260 2070;1136 12602 32297;32298 50330;50331 50330 850 2 SNVLNVNNHITQYVK LKYANRAKDIKSSLKSNVLNVNNHITQYVK SNVLNVNNHITQYVKICNEQKAEILLLKEK K S N V K I 0 0 4 0 0 1 0 0 1 1 1 1 0 0 0 1 1 0 1 3 0 0 15 0 1741.9111 B2R6H3;Q8NI77;Q4G194 B2R6H3 361 375 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 3 0.033573 19.819 1 1 1.3065 1.1756 10.977 2 Median 1.0886 1.0878 NaN 1 0 Median 1.5681 1.2705 NaN 1 0 Median 17970000 9396600 8573000 15229000 7772400 7457100 2740100 1624200 1115900 12261 842 12603 32299;32300 50332;50333 50332 2 SNVLTGLQDSSTDNR KPKPLVVQVPTFARRSNVLTGLQDSSTDNR SNVLTGLQDSSTDNRAKLDLGAQGKGQGHQ R S N N R A 0 1 2 2 0 1 0 1 0 0 2 0 0 0 0 3 2 0 0 1 0 0 15 0 1605.7594 A0A0S2Z4Q9;A0A0S2Z5B2;O00257 A0A0S2Z4Q9 90 104 CBX4 E3 SUMO-protein ligase CBX4 yes no 2 0.0033793 60.49 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3668700 0 3668700 3668700 0 3668700 0 0 0 12262 566 12604 32301 50334;50335 50334 2 SNVSSPATPTASSSSSTTPTRK DISLDNLVEGKRKRRSNVSSPATPTASSSS TPTASSSSSTTPTRKITESPRASMGVLSGK R S N R K I 2 1 1 0 0 0 0 0 0 0 0 1 0 0 3 8 5 0 0 1 0 0 22 1 2150.0451 H7BZY0;B3KVT9;B7Z3E7;A6NNK5;Q12888 H7BZY0 99 120 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 0.0027777 34.689 2 1 0.90856 0.7698 NaN 1 Median NaN NaN NaN 0 0 Median 0.90856 0.7698 NaN 1 0 Median 6520900 462230 6058600 5455800 0 5455800 1065000 462230 602800 12263 689 12605 32302;32303;32304 50336;50337;50338 50337 3 SNYFLK ______________________________ PREDRATWKSNYFLKIIQLLDDYPKCFIVG K S N L K I 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 6 0 770.39629 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;Q53HK9;F8VW21;G3V210;F8VZS0;B4E3D5;Q8NHW5;F8VQY6;F8VRK7;F8VS58;F8VYN4 Q53HW2 11 16 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.058999 69.39 1 0.92422 0.76036 NaN 1 Median NaN NaN NaN 0 0 Median 0.92422 0.76036 NaN 1 0 Median 10216000 4996500 5219700 0 0 0 10216000 4996500 5219700 12264 345 12606 32305 50339 50339 1 SNYNFEK FHRKKNLQYYDISAKSNYNFEKPFLWLARK QYYDISAKSNYNFEKPFLWLARKLIGDPNL K S N E K P 0 0 2 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 7 0 900.39775 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 170 176 RAN GTP-binding nuclear protein Ran yes no 2 0.027791 89.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42836000 42836000 0 42836000 42836000 0 0 0 0 12265 1082 12607 32306 50340 50340 1 SNYNLPMHK LDELYGTWRKAASLKSNYNLPMHKMINTDL KAASLKSNYNLPMHKMINTDLSRILKSPEI K S N H K M 0 0 2 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 9 0 1102.523 P36578;Q59GY2;B4DMJ6;H3BM89;B4DMJ2 P36578 275 283 RPL4 60S ribosomal protein L4 yes no 2 7.5052E-12 151.04 3 2 1.2806 1.501 51.997 5 Median 1.2857 1.506 0.19364 3 0 Median 0.73755 0.58245 3.2002 2 0 Median 832740000 365590000 467150000 804930000 349720000 455200000 27807000 15865000 11942000 12266 1548 12608 32307;32308;32309;32310;32311 50341;50342;50343;50344;50345;50346 50342 1306 6 SNYQGLPVR VFEVLGHHLLKWIIKSNYQGLPVRCVKSII LKWIIKSNYQGLPVRCVKSIIRQVLQGLDY K S N V R C 0 1 1 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 9 0 1032.5352 A0A024R704;P78362 A0A024R704 180 188 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal yes no 2 0.0044628 69.198 1 1.382 1.384 NaN 1 Median 1.382 1.384 NaN 1 0 Median NaN NaN NaN 0 0 Median 18816000 6935300 11881000 18816000 6935300 11881000 0 0 0 12267 212 12609 32312 50347 50347 1 SPAESCDLLGDIQTCIR AFQHLLLLVGIHLLKSPAESCDLLGDIQTC AESCDLLGDIQTCIRKSLGEKPRRSRTKTI K S P I R K 1 1 0 2 2 1 1 1 0 2 2 0 0 0 1 2 1 0 0 0 0 0 17 0 1933.8874 Q9BQG0;I3L1L3 Q9BQG0 609 625 MYBBP1A Myb-binding protein 1A yes no 2 4.8836E-25 140.08 2 2 0.86811 0.82175 5.587 4 Median 0.80093 0.82175 0.62546 2 0 Median 0.99073 0.83768 9.464 2 0 Median 84387000 45590000 38798000 40340000 23395000 16946000 44047000 22195000 21852000 12268 1997 12610 32313;32314;32315;32316 50348;50349;50350;50351;50352;50353;50354;50355 50355 8 SPAFVQLAPLSSK GPLLGPSMAREPGGRSPAFVQLAPLSSKVR GRSPAFVQLAPLSSKVRLSSPSIKDLPAGR R S P S K V 2 0 0 0 0 1 0 0 0 0 2 1 0 1 2 3 0 0 0 1 0 0 13 0 1343.7449 A6NEM2;P51610 A6NEM2 1205 1217 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.0050357 59.198 1 2 1.8056 1.4599 15.687 2 Median NaN NaN NaN 0 0 Median 1.8056 1.4599 15.687 2 0 Median 13697000 1778600 11918000 9360600 0 9360600 4336200 1778600 2557600 12269 680 12611 32317;32318;32319 50356;50357;50358 50356 3 SPAGLQVLNDYLADK ______________________________ SPAGLQVLNDYLADKSYIEGYVPSQADVAV K S P D K S 2 0 1 2 0 1 0 1 0 0 3 1 0 0 1 1 0 0 1 1 0 0 15 0 1602.8253 A0A024R3W7;P24534;F8WF65;F2Z2G2;C9JZW3 A0A024R3W7 8 22 EEF1B2 Elongation factor 1-beta yes no 2 3.8693E-33 155.66 1 2 1.0739 0.86135 9.9698 2 Median NaN NaN NaN 0 0 Median 1.0739 0.86135 9.9698 2 0 Median 27656000 4974700 22681000 16400000 0 16400000 11256000 4974700 6281700 12270 142 12612 32320;32321;32322 50359;50360;50361 50359 3 SPAGPAATPAQAQAASTPR AQVIKPPLIFVDPNRSPAGPAATPAQAQAA PAATPAQAQAASTPRKARASESTARSSSSE R S P P R K 7 1 0 0 0 2 0 1 0 0 0 0 0 0 4 2 2 0 0 0 0 0 19 0 1748.8806 E7ETY2;B4DRA2;Q13428;Q59FZ2 Q13428 967 985 TCOF1 Treacle protein no no 2 5.5641E-30 138.19 2 1 0.78793 0.79971 13.248 3 Median 0.77591 0.79354 1.0951 2 0 Median 1.1545 0.99782 NaN 1 0 Median 32369000 17775000 14594000 29654000 16741000 12913000 2714900 1034000 1680900 12271 1712;1225 12613 32323;32324;32325 50362;50363;50364;50365;50366;50367 50365 6 SPASDTYIVFGEAK SKNILFVITKPDVYKSPASDTYIVFGEAKI KSPASDTYIVFGEAKIEDLSQQAQLAAAEK K S P A K I 2 0 0 1 0 0 1 1 0 1 0 1 0 1 1 2 1 0 1 1 0 0 14 0 1483.7195 F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3;B4DDI8 F8W1N5 35 48 NACA;hCG_2016482 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 2 9.6915E-12 158.06 2 2 1.8068 2.6029 43.97 4 Linear 2.3044 2.3901 1.5797 2 0 Median 1.4203 1.1191 6.284 2 0 Median 72285000 22462000 49823000 64554000 19678000 44876000 7730900 2784400 4946500 12272 324 12614 32326;32327;32328;32329 50368;50369;50370;50371;50372;50373;50374;50375;50376;50377;50378 50368 11 SPASIEVVKPMEAASAILSQADAR FIVSPLNSSSALALRSPASIEVVKPMEAAS PMEAASAILSQADARQVVLKYTVPGYRNSL R S P A R Q 6 1 0 1 0 1 2 0 0 2 1 1 1 0 2 4 0 0 0 2 0 0 24 1 2440.2632 A0A024R2Z6;Q9BVP2 A0A024R2Z6 312 335 GNL3 Guanine nucleotide-binding protein-like 3 yes no 3 3.8338E-56 156.74 4 4 1.1848 1.2695 30.475 8 Median 1.1848 1.3799 4.2038 4 0 Median 1.0594 0.89974 29.97 4 0 Median 188450000 81832000 106620000 150440000 65064000 85380000 38011000 16768000 21243000 12273 125 12615;12616 32330;32331;32332;32333;32334;32335;32336;32337 50379;50380;50381;50382;50383;50384;50385;50386;50387;50388;50389;50390;50391;50392;50393;50394;50395;50396;50397 50386 111 19 SPAVATSTAAPPPPSSPLPSK FTPSSTMMEVFLQEKSPAVATSTAAPPPPS STAAPPPPSSPLPSKSTSAPQMSPGSSDNQ K S P S K S 4 0 0 0 0 0 0 0 0 0 1 1 0 0 7 5 2 0 0 1 0 0 21 0 1959.0313 B4DZJ6;B4DYY5;F8W726;Q14157 B4DZJ6 353 373 UBAP2L Ubiquitin-associated protein 2-like yes no 2 0.018552 32.275 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2467800 0 2467800 2467800 0 2467800 0 0 0 12274 1052 12617 32338 50398 50398 1 SPDEATAADQESEDDLSASR SPAPEFLASSPPDNKSPDEATAADQESEDD TAADQESEDDLSASRTSLERQAPHRGNTMV K S P S R T 4 1 0 4 0 1 3 0 0 0 1 0 0 0 1 4 1 0 0 0 0 0 20 0 2092.8669 C9JME2;Q9Y4F1;M0QXT1 C9JME2 909 928 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 yes no 2 0.031368 37.013 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12275 1139 12618 32339 50399 50399 1 SPDGAHLTWEPPSVTSGK LPGFPGAPCAIKISKSPDGAHLTWEPPSVT GAHLTWEPPSVTSGKIIEYSVYLAIQSSQA K S P G K I 1 0 0 1 0 0 1 2 1 0 1 1 0 0 3 3 2 1 0 1 0 0 18 0 1864.8955 A6NEM2;P51610;H7C1C4 A6NEM2 1947 1964 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 3 0.035089 25.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5543700 5543700 0 5543700 5543700 0 0 0 0 12276 680 12619 32340 50400 50400 1 SPDSDVAATLK IVALNKIDRLYDWKKSPDSDVAATLKKQKK DWKKSPDSDVAATLKKQKKNTKDEFEERAK K S P L K K 2 0 0 2 0 0 0 0 0 0 1 1 0 0 1 2 1 0 0 1 0 0 11 0 1102.5506 Q8N5A0;A0A087WUT6;O60841;B3KM86;D3DVI5 Q8N5A0 767 777 EIF5B Eukaryotic translation initiation factor 5B yes no 2 6.0444E-13 123.63 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29790000 29790000 0 29790000 29790000 0 0 0 0 12277 414 12620 32341;32342 50401;50402 50402 2 SPDTILQK LRRYIKEYVTCHTCRSPDTILQKDTRLYFL VTCHTCRSPDTILQKDTRLYFLQCETCHSR R S P Q K D 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 8 0 900.49165 Q6IBR8;B5BU01;P20042;Q96I16 Q6IBR8 286 293 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 2 0.052443 53.878 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12278 1073 12621 32343 50403 50403 1 SPEDHIGAVLER TDIVLKGVVQVEKIKSPEDHIGAVLERAKP KIKSPEDHIGAVLERAKPEYISKTYKIDSW K S P E R A 1 1 0 1 0 0 2 1 1 1 1 0 0 0 1 1 0 0 0 1 0 0 12 0 1321.6626 Q5T0F3;Q13823 Q5T0F3 389 400 GNL2 Nucleolar GTP-binding protein 2 yes no 3 0.03264 23.956 1 0.98516 1.1411 NaN 1 Median 0.98516 1.1411 NaN 1 0 Median NaN NaN NaN 0 0 Median 66819000 31944000 34875000 66819000 31944000 34875000 0 0 0 12279 1721 12622 32344 50404 50404 1 SPEEHLEEMMK LSGSPLKVKNSKNSKSPEEHLEEMMKMMSP KNSKSPEEHLEEMMKMMSPNKLHTNFHIPK K S P M K M 0 0 0 0 0 0 4 0 1 0 1 1 2 0 1 1 0 0 0 0 0 0 11 0 1358.5846 Q9UIG0 Q9UIG0 361 371 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.00049999 72.643 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14555000 0 14555000 14555000 0 14555000 0 0 0 12280 2103 12623 32345;32346 50405;50406 50406 1932;1933 2 SPEQQLSATQK GGVITSDMIEMIFSKSPEQQLSATQKFRKL IFSKSPEQQLSATQKFRKLLSKEPNPPIDE K S P Q K F 1 0 0 0 0 3 1 0 0 0 1 1 0 0 1 2 1 0 0 0 0 0 11 0 1215.6095 Q5BKZ2;P52294;C9J352;C9JWD9;F2Z3G4;C9J4U1;C9JYI4 Q5BKZ2 95 105 KPNA1 Importin subunit alpha;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes no 2 7.0369E-24 174.98 1 1 0.94772 0.94913 NaN 1 Median 0.94772 0.94913 NaN 1 0 Median NaN NaN NaN 0 0 Median 16645000 7656300 8988900 15690000 7656300 8033500 955450 0 955450 12281 1600 12624 32347;32348 50407;50408 50407 2 SPEVLLGSAR PIRVYTHEAITLWYRSPEVLLGSARYSTPV TLWYRSPEVLLGSARYSTPVDIWSIGTIFA R S P A R Y 1 1 0 0 0 0 1 1 0 0 2 0 0 0 1 2 0 0 0 1 0 0 10 0 1027.5662 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;A0A024QZJ8;E5RIU6 A0A024QZP7 171 180 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 1.195E-08 123.5 2 4 1.2232 1.3858 0.64376 2 Median 1.2232 1.3858 0.64376 2 0 Median NaN NaN NaN 0 0 Median 235820000 113510000 122310000 227910000 105600000 122310000 7910700 7910700 0 12282 25 12625 32349;32350;32351;32352;32353;32354 50409;50410;50411;50412;50413;50414;50415;50416 50412 8 SPFEVQVGPEAGMQK RYSIAITWGGHHIPKSPFEVQVGPEAGMQK SPFEVQVGPEAGMQKVRAWGPGLHGGIVGR K S P Q K V 1 0 0 0 0 2 2 2 0 0 0 1 1 1 2 1 0 0 0 2 0 0 15 0 1602.7712 O75369;A0A024R321;Q68CT4;E7EN95 O75369 537 551 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.00063854 57.164 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12283 1402 12626 32355;32356 50417;50418 50418 1080 2 SPFEVYVDK THKVTVLFAGQHIAKSPFEVYVDKSQGDAS GQHIAKSPFEVYVDKSQGDASKVTAQGPGL K S P D K S 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 1 2 0 0 9 0 1082.5284 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 368 376 FLNA Filamin-A yes no 2 0.00014939 108.3 2 1.4487 1.4486 6.462 2 Median 1.4487 1.4486 6.462 2 0 Median NaN NaN NaN 0 0 Median 54200000 19556000 34644000 54200000 19556000 34644000 0 0 0 12284 1504 12627 32357;32358 50419;50420;50421;50422 50422 4 SPFNSPSPQDSPR EGGISSPVKKTEMDKSPFNSPSPQDSPRLS DKSPFNSPSPQDSPRLSSFTQHHRPVIAVH K S P P R L 0 1 1 1 0 1 0 0 0 0 0 0 0 1 4 4 0 0 0 0 0 0 13 0 1414.6477 Q6FI30;B7Z4T6;P08651 Q6FI30 324 336 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 2 5.7313E-06 105.46 2 1 0.66027 0.65873 15.203 3 Median 0.71017 0.71041 10.682 2 0 Median 0.65084 0.56528 NaN 1 0 Median 28023000 14785000 13238000 25797000 13625000 12173000 2225600 1160700 1064900 12285 1091 12628 32359;32360;32361 50423;50424;50425;50426 50424 4 SPFPDVVPLQPEVSSYR VYCSKEQSQSAHLWKSPFPDVVPLQPEVSS FPDVVPLQPEVSSYRRGRKKRVPYTKVQLK K S P Y R R 0 1 0 1 0 1 1 0 0 0 1 0 0 1 4 3 0 0 1 3 0 0 17 0 1915.968 P31276 P31276 242 258 HOXC13 Homeobox protein Hox-C13 yes yes 2 1.0908E-06 83.314 1 2 0.78567 0.66338 3.4038 2 Median NaN NaN NaN 0 0 Median 0.78567 0.66338 3.4038 2 0 Median 20358000 15469000 4889200 8581100 8581100 0 11777000 6887900 4889200 12286 1534 12629 32362;32363;32364 50427;50428;50429;50430 50427 4 SPFSVAVSPSLDLSK PVGVNVTYGGDPIPKSPFSVAVSPSLDLSK SPFSVAVSPSLDLSKIKVSGLGEKVDVGKD K S P S K I 1 0 0 1 0 0 0 0 0 0 2 1 0 1 2 5 0 0 0 2 0 0 15 0 1532.8086 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 959 973 FLNA Filamin-A yes no 2 3.1323E-09 105.65 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28482000 19535000 8946800 19535000 19535000 0 8946800 0 8946800 12287 1504 12630 32365;32366 50431;50432 50432 2 SPFTVGVAAPLDLSK NMQVLVTYGGDPIPKSPFTVGVAAPLDLSK SPFTVGVAAPLDLSKIKLNGLENRVEVGKD K S P S K I 2 0 0 1 0 0 0 1 0 0 2 1 0 1 2 2 1 0 0 2 0 0 15 0 1500.8188 O75369;A0A024R321;Q68CT4;E7EN95 O75369 932 946 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.00022701 74.611 2 2.3075 2.3326 NaN 1 Median 2.3075 2.3326 NaN 1 0 Median NaN NaN NaN 0 0 Median 15758000 2197800 13560000 15758000 2197800 13560000 0 0 0 12288 1402 12631 32367;32368 50433;50434 50434 2 SPGLYFLTAGDQGTLR AVLLPEEPVSQLGVKSPGLYFLTAGDQGTL PGLYFLTAGDQGTLRVWEAASGQCVYTQAQ K S P L R V 1 1 0 1 0 1 0 3 0 0 3 0 0 1 1 1 2 0 1 0 0 0 16 0 1694.8628 A0A087WYP7;Q12788;J3KNP2;A0JLS5 Q12788 257 272 TBL3 Transducin beta-like protein 3 no no 2 5.4062E-57 184.34 2 2 0.99349 0.99513 3.7584 4 Median 0.86324 0.98821 2.1081 2 0 Median 1.1807 1.0233 5.0735 2 0 Median 357070000 186170000 170910000 245990000 135830000 110150000 111090000 50335000 60753000 12289 1698;436 12632 32369;32370;32371;32372 50435;50436;50437;50438;50439;50440;50441;50442 50436 8 SPGMLEPLGSSR FSRPSMSPTPLDRCRSPGMLEPLGSSRTPM RCRSPGMLEPLGSSRTPMSVLQQAGGSMMD R S P S R T 0 1 0 0 0 0 1 2 0 0 2 0 1 0 2 3 0 0 0 0 0 0 12 0 1229.6074 A0A140VK53;Q9UQ35;O60382;A0AUK8 A0A140VK53 2132 2143 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.00011422 86.014 3 0.90283 0.89687 NaN 1 Median 0.90283 0.89687 NaN 1 0 Median NaN NaN NaN 0 0 Median 16162000 8491900 7670200 16162000 8491900 7670200 0 0 0 12290 619 12633 32373;32374;32375 50443;50444;50445 50445 476 3 SPGPGPGPGAGAEPGATGGSSHFISSR MVNTRKSSLRLLGSKSPGPGPGPGAGAEPG EPGATGGSSHFISSRTRSSKTRAASCPAAK K S P S R T 3 1 0 0 0 0 1 8 1 1 0 0 0 1 5 5 1 0 0 0 0 0 27 0 2391.1203 Q9ULI0;C9JG15 Q9ULI0 16 42 ATAD2B ATPase family AAA domain-containing protein 2B yes no 3 0.00037565 30.855 1 2.6873 2.3631 NaN 1 Median NaN NaN NaN 0 0 Median 2.6873 2.3631 NaN 1 0 Median 1867200 658300 1208900 0 0 0 1867200 658300 1208900 12291 2108 12634 32376 50446 50446 1 SPGSTPTTPTSSQAPQK KTPERLSLEGERQPKSPGSTPTTPTSSQAP GSTPTTPTSSQAPQKLDASAAAAPASLPPS K S P Q K L 1 0 0 0 0 2 0 1 0 0 0 1 0 0 4 4 4 0 0 0 0 0 17 0 1670.8111 A0A024R8B6;P35658 A0A024R8B6 471 487 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.053818 30.828 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 872590 0 872590 872590 0 872590 0 0 0 12292 246 12635 32377 50447 50447 1 SPGVAAAVAEDGGLK ______________________________ SPGVAAAVAEDGGLKKCKISSYCRSQPPAR K S P L K K 4 0 0 1 0 0 1 3 0 0 1 1 0 0 1 1 0 0 0 2 0 0 15 0 1340.6936 E9PQV9;A0A024R3A2;Q9BTE7;E9PLH8;E9PM78;H0YD80;E9PLS2;E9PM04 E9PQV9 9 23 DCUN1D5 DCN1-like protein;DCN1-like protein 5 yes no 2 5.2095E-06 92.19 2 2.462 2.4646 NaN 1 Median 2.462 2.4646 NaN 1 0 Median NaN NaN NaN 0 0 Median 13953000 2090500 11862000 13953000 2090500 11862000 0 0 0 12293 132 12636 32378;32379 50448;50449 50449 1 SPHIETYLK VVVQVLDARDPMGTRSPHIETYLKKEKPWK DPMGTRSPHIETYLKKEKPWKHLIFVLNKC R S P L K K 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 0 0 0 9 0 1086.571 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 234 242 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.04603 39.622 1 1.3045 1.0416 NaN 1 Median NaN NaN NaN 0 0 Median 1.3045 1.0416 NaN 1 0 Median 9216300 3958000 5258300 0 0 0 9216300 3958000 5258300 12294 1721 12637 32380 50450 50450 1 SPIAPEELALVHNLR INALWGRTTLKREDKSPIAPEELALVHNLR SPIAPEELALVHNLRKMMKNDWHGGAIVSA K S P L R K 2 1 1 0 0 0 2 0 1 1 3 0 0 0 2 1 0 0 0 1 0 0 15 0 1657.9152 P51398;V9GYW1;V9GYA7;V9GYJ9;V9GYL9;V9GZ61;V9GYC9;V9GZ03 P51398 280 294 DAP3 28S ribosomal protein S29, mitochondrial yes no 3 0.0056141 31.914 1 1.0282 0.88277 NaN 1 Median NaN NaN NaN 0 0 Median 1.0282 0.88277 NaN 1 0 Median 2811400 1487000 1324400 0 0 0 2811400 1487000 1324400 12295 1594 12638 32381 50451 50451 1 SPILVATAVAAR QRDREEALHQFRSGKSPILVATAVAARGLD SGKSPILVATAVAARGLDISNVKHVINFDL K S P A R G 4 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 12 0 1167.6976 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4E132;A0A0J9YVQ7 A0A0D9SFB3 492 503 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 1.1973E-22 155.06 2 2 1.6582 1.8799 30.796 4 Linear 1.6472 1.867 2.4463 2 0 Median 1.3059 1.0989 5.5128 2 0 Median 152210000 57227000 94980000 141100000 52515000 88587000 11105000 4712700 6392600 12296 522 12639 32382;32383;32384;32385 50452;50453;50454;50455;50456;50457;50458;50459 50452 8 SPISVPGGSALISNLGK TTVVGGVTKTITLVKSPISVPGGSALISNL ISVPGGSALISNLGKVMSVVQTKPVQTSAV K S P G K V 1 0 1 0 0 0 0 3 0 2 2 1 0 0 2 4 0 0 0 1 0 0 17 0 1595.8883 A6NEM2;P51610 A6NEM2 666 682 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.00044749 65.395 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7665900 0 7665900 7665900 0 7665900 0 0 0 12297 680 12640 32386 50460 50460 1 SPITGNDLSPPVSFNLMFK GQQELADLFVNYNVKSPITGNDLSPPVSFN GNDLSPPVSFNLMFKTFIGPGGNMPGYLRP K S P F K T 0 0 2 1 0 0 0 1 0 1 2 1 1 2 3 3 1 0 0 1 0 0 19 0 2063.0398 A0A090N8G0;P41250;Q75MN1 A0A090N8G0 211 229 GARS Glycine--tRNA ligase yes no 2 4.0556E-06 75.589 2 2.9328 2.9653 23.444 2 Median 2.9328 2.9653 23.444 2 0 Median NaN NaN NaN 0 0 Median 22827000 6617500 16210000 22827000 6617500 16210000 0 0 0 12298 457 12641 32387;32388 50461;50462 50462 324 2 SPLAGDFITMQCR IPVHDGYVLQQGIVKSPLAGDFITMQCREL VKSPLAGDFITMQCRELLQEMNIELVPPYM K S P C R E 1 1 0 1 1 1 0 1 0 1 1 0 1 1 1 1 1 0 0 0 0 0 13 0 1494.6959 Q6FI97;Q53FS0;O96019 Q6FI97 195 207 BAF53A;ACTL6A Actin-like protein 6A yes no 2 0.00022776 84.658 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6537100 6537100 0 6537100 6537100 0 0 0 0 12299 1434 12642 32389;32390 50463;50464;50465 50465 1131 3 SPLAQDSPSQGSPALYR IRFIARQQNIKNARKSPLAQDSPSQGSPAL LAQDSPSQGSPALYRNVNTLRERISAFQSA K S P Y R N 2 1 0 1 0 2 0 1 0 0 2 0 0 0 3 4 0 0 1 0 0 0 17 0 1772.8693 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 105 121 CDCA2 Cell division cycle-associated protein 2 yes no 2 3.4721E-18 132.86 1 1 1.1332 1.0236 40.693 2 Median 0.76986 0.76767 NaN 1 0 Median 1.6681 1.3649 NaN 1 0 Median 30037000 15671000 14366000 16616000 10319000 6297300 13421000 5351600 8069000 12300 1233 12643 32391;32392 50466;50467;50468 50466 3 SPLFGQYFVLENPGTIK SYRQCDPSERKLYGKSPLFGQYFVLENPGT LFGQYFVLENPGTIKVGDPVYLLGQ_____ K S P I K V 0 0 1 0 0 1 1 2 0 1 2 1 0 2 2 1 1 0 1 1 0 0 17 0 1908.9986 Q5VT66;H7BYZ9 Q5VT66 311 327 MARC1 Mitochondrial amidoxime-reducing component 1 yes no 2 7.0601E-09 100.22 2 1.5812 1.5934 7.0374 2 Median 1.5812 1.5934 7.0374 2 0 Median NaN NaN NaN 0 0 Median 15706000 6713100 8993200 15706000 6713100 8993200 0 0 0 12301 1831 12644 32393;32394 50469;50470;50471;50472;50473 50472 5 SPLFSVQR LSELEAAPYLPQEEKSPLFSVQREGLPEDG YLPQEEKSPLFSVQREGLPEDGTLYRINRF K S P Q R E 0 1 0 0 0 1 0 0 0 0 1 0 0 1 1 2 0 0 0 1 0 0 8 0 932.50797 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 355 362 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.0059012 86.833 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5137400 0 5137400 5137400 0 5137400 0 0 0 12302 1938 12645 32395 50474 50474 1 SPLGEVAIR FSAMEFLDGDGGSLRSPLGEVAIRDIVQFV DGGSLRSPLGEVAIRDIVQFVPFRQFQNAP R S P I R D 1 1 0 0 0 0 1 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 9 0 940.53418 A0A024R994;O75131 A0A024R994 476 484 CPNE3 Copine-3 yes no 2 0.0076479 69.812 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17043000 0 17043000 17043000 0 17043000 0 0 0 12303 271 12646 32396;32397 50475;50476 50476 2 SPLKPESQLDLR NTQDEEETKKEESLKSPLKPESQLDLRVQE SLKSPLKPESQLDLRVQELIKLICNVQAME K S P L R V 0 1 0 1 0 1 1 0 0 0 3 1 0 0 2 2 0 0 0 0 0 0 12 1 1381.7565 G3V167;A8K214;Q9UGN5 G3V167 226 237 PARP2 Poly [ADP-ribose] polymerase 2 yes no 3 0.0034344 48.524 1 0.69937 0.82446 NaN 1 Median 0.69937 0.82446 NaN 1 0 Median NaN NaN NaN 0 0 Median 35179000 21808000 13371000 35179000 21808000 13371000 0 0 0 12304 706 12647 32398 50477 50477 1 SPLLPAVLEGLAK IVFVTYFRILKKAQRSPLLPAVLEGLAKFA QRSPLLPAVLEGLAKFAHLINVEFFDDLLV R S P A K F 2 0 0 0 0 0 1 1 0 0 4 1 0 0 2 1 0 0 0 1 0 0 13 0 1306.786 A8K905;Q8WTT2;B4DXL4 A8K905 512 524 NOC3L Nucleolar complex protein 3 homolog yes no 2 6.8805E-09 118.28 2 1.1053 1.2346 1.0137 2 Median 1.1053 1.2346 1.0137 2 0 Median NaN NaN NaN 0 0 Median 116920000 54553000 62362000 116920000 54553000 62362000 0 0 0 12305 780 12648 32399;32400 50478;50479;50480;50481 50479 4 SPLLQLPHIEEDNLR MKLSQMAVQGLQQFKSPLLQLPHIEEDNLR SPLLQLPHIEEDNLRRVSNHKKYKIKTIQD K S P L R R 0 1 1 1 0 1 2 0 1 1 4 0 0 0 2 1 0 0 0 0 0 0 15 0 1772.9421 B3KNE7;B3KQF0;A0A0S2Z5M1;Q9UGP8;B3KWU4 B3KNE7 242 256 SEC63 Translocation protein SEC63 homolog yes no 3 8.902E-05 61.732 1 1 0.63621 0.63271 NaN 1 Median 0.63621 0.63271 NaN 1 0 Median NaN NaN NaN 0 0 Median 9399500 4829300 4570200 8329500 3759400 4570200 1070000 1070000 0 12306 584 12649 32401;32402 50482;50483 50483 1 SPLPIVR FCDSQLRLLFTMLEKSPLPIVRSNLMVATG LLFTMLEKSPLPIVRSNLMVATGDLAIRFP K S P V R S 0 1 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 7 0 780.48577 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1066 1072 NCAPD2 Condensin complex subunit 1 yes no 2 0.010175 121.68 2 1 0.91127 1.0528 15.607 3 Median 0.8782 1.0271 3.4943 2 0 Median 1.5377 1.3413 NaN 1 0 Median 668160000 343200000 324960000 636260000 331050000 305200000 31902000 12148000 19754000 12307 908 12650 32403;32404;32405 50484;50485;50486;50487 50486 4 SPLQSVVVR AVSELSPRERSPALKSPLQSVVVRRRSPRP RSPALKSPLQSVVVRRRSPRPSPVPKPSPP K S P V R R 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 2 0 0 0 3 0 0 9 0 983.57638 Q9Y2W1;Q7Z5U1;Q05D20;Q6P0P7;Q6PJV4 Q9Y2W1 253 261 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.00016983 107.57 1 2 0.92992 1.007 13.055 3 Plateau 0.87122 1.007 NaN 1 0 Median 0.94447 0.80452 2.1967 2 0 Median 79296000 41832000 37464000 69235000 36563000 32672000 10062000 5269000 4792500 12308 2128 12651 32406;32407;32408 50488;50489;50490 50488 3 SPLSALAR KQHQKALPKKGVLGKSPLSALARKKARLSL KKGVLGKSPLSALARKKARLSLVIRSPSLL K S P A R K 2 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 8 0 813.47085 Q9BQG0;I3L1L3;B4DE42;I3L2H8 Q9BQG0 1290 1297 MYBBP1A Myb-binding protein 1A yes no 2 0.0010071 117.16 2 0.88914 0.977 1.9213 2 Median 0.88914 0.977 1.9213 2 0 Median NaN NaN NaN 0 0 Median 94431000 43262000 51169000 94431000 43262000 51169000 0 0 0 12309 1997 12652 32409;32410 50491;50492;50493;50494 50494 4 SPLTQEQLIPNLAMK EEHLQRVGHFDPVTRSPLTQEQLIPNLAMK SPLTQEQLIPNLAMKEVIDAFISENGWVED R S P M K E 1 0 1 0 0 2 1 0 0 1 3 1 1 0 2 1 1 0 0 0 0 0 15 0 1681.9073 Q9UNE7;H3BTA3 Q9UNE7 273 287 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 3.8515E-06 94.538 1 1.5899 1.615 NaN 1 Median 1.5899 1.615 NaN 1 0 Median NaN NaN NaN 0 0 Median 12750000 5862100 6888200 12750000 5862100 6888200 0 0 0 12310 2115 12653 32411 50495 50495 1940 1 SPLYLVSR RPSQCSEFIQQSSMKSPLYLVSRSLPSSSQ IQQSSMKSPLYLVSRSLPSSSQLKGSPQAI K S P S R S 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 1 1 0 0 8 0 933.52837 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1142 1149 AHCTF1 Protein ELYS yes no 2 0.014518 67.993 1 2 2.7405 2.3539 18.455 3 Median 1.6729 1.7184 NaN 1 0 Median 2.7601 2.3653 0.68587 2 0 Median 22745000 7639700 15105000 14287000 5262300 9024400 8458400 2377400 6081000 12311 1945 12654 32412;32413;32414 50496;50497;50498;50499;50500 50496 5 SPMVEQAVQTGSADNLNAK LTAKGAGFPSIPVGKSPMVEQAVQTGSADN EQAVQTGSADNLNAKKLLPGKGTTGTQLNG K S P A K K 3 0 2 1 0 2 1 1 0 0 1 1 1 0 1 2 1 0 0 2 0 0 19 0 1958.9368 Q5TBP9;Q9BX40;B4DQC9;Q5TBQ1;Q5TBQ0 Q5TBP9 74 92 LSM14B Protein LSM14 homolog B yes no 2 3.8479E-05 67.115 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12312 1825 12655 32415 50501 50501 1680 1 SPNLWLK IELFYKFVPLLPGNRSPNLWLKDVLKEEGV VPLLPGNRSPNLWLKDVLKEEGVSFLINTF R S P L K D 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 7 0 856.48069 P78527 P78527 1203 1209 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.056031 52.299 1 0.32654 0.26221 NaN 1 Median NaN NaN NaN 0 0 Median 0.32654 0.26221 NaN 1 0 Median 3031800 2234600 797190 0 0 0 3031800 2234600 797190 12313 1665 12656 32416 50502 50502 1 SPNQNVQQAAAGALR VYQLGGICKLVDLLRSPNQNVQQAAAGALR SPNQNVQQAAAGALRNLVFRSTTNKLETRR R S P L R N 4 1 2 0 0 3 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 15 0 1523.7805 A0A024R952;Q13835 A0A024R952 298 312 PKP1 Plakophilin-1 yes no 2 5.5418E-23 136.5 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8599600 8599600 0 7280300 7280300 0 1319300 1319300 0 12314 270 12657 32417;32418;32419 50503;50504;50505 50503 3 SPPILPTLDSLK NFSLTMMVIFFLQRRSPPILPTLDSLKTLA QRRSPPILPTLDSLKTLADAEDKCVIEGNN R S P L K T 0 0 0 1 0 0 0 0 0 1 3 1 0 0 3 2 1 0 0 0 0 0 12 0 1279.7388 Q9NVV4 Q9NVV4 392 403 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 2 0.0041381 54.259 2 3.8757 3.0928 12.689 2 Median NaN NaN NaN 0 0 Median 3.8757 3.0928 12.689 2 0 Median 4883700 860320 4023400 0 0 0 4883700 860320 4023400 12315 2075 12658 32420;32421 50506;50507 50506 2 SPPNVQFTFQQPK FTGGVEVDVFGKLGRSPPNVQFTFQQPKPL GRSPPNVQFTFQQPKPLSVEPQQGPQAGGT R S P P K P 0 0 1 0 0 3 0 0 0 0 0 1 0 2 3 1 1 0 0 1 0 0 13 0 1516.7674 O15031 O15031 884 896 PLXNB2 Plexin-B2 yes yes 2 0.017969 48.998 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5942300 0 5942300 5942300 0 5942300 0 0 0 12316 1373 12659 32422 50508 50508 1 SPPPELTDTATSTK EESMTIDKNTKIPCKSPPPELTDTATSTKR KSPPPELTDTATSTKRCPKTRPRKEVKEEL K S P T K R 1 0 0 1 0 0 1 0 0 0 1 1 0 0 3 2 4 0 0 0 0 0 14 0 1443.7093 P46013 P46013 2588 2601 MKI67 Antigen KI-67 yes yes 2 2.4074E-09 116.54 4 2 2.1387 2.4051 18.644 5 Median 2.0239 2.1947 7.2546 3 0 Median 3.8572 3.0761 4.7695 2 0 Median 218370000 66451000 151920000 183750000 59660000 124090000 34624000 6790800 27834000 12317 1569 12660 32423;32424;32425;32426;32427;32428 50509;50510;50511;50512;50513;50514;50515;50516;50517;50518;50519;50520 50511 12 SPPPESMDTPTSTR EESTTDDKTTKIACKSPPPESMDTPTSTRR KSPPPESMDTPTSTRRRPKTPLGKRDIVEE K S P T R R 0 1 0 1 0 0 1 0 0 0 0 0 1 0 4 3 3 0 0 0 0 0 14 0 1501.6719 P46013 P46013 2105 2118 MKI67 Antigen KI-67 yes yes 2 2.6906E-05 89.805 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41431000 0 41431000 41431000 0 41431000 0 0 0 12318 1569 12661 32429;32430 50521;50522 50521 1342 2 SPPPESVDTPTSTK EESMTDEKTTKIACKSPPPESVDTPTSTKQ KSPPPESVDTPTSTKQWPKRSLRKADVEEE K S P T K Q 0 0 0 1 0 0 1 0 0 0 0 1 0 0 4 3 3 0 0 1 0 0 14 0 1441.6937 P46013 P46013 1131 1144 MKI67 Antigen KI-67 yes yes 2 1.2554E-06 128.85 2 3 3.7234 3.0363 13.917 5 Median 2.1579 2.4178 5.7947 2 0 Median 3.9223 3.0854 2.1043 3 0 Plateau 162450000 49513000 112930000 130980000 43127000 87854000 31466000 6385600 25081000 12319 1569 12662 32431;32432;32433;32434;32435 50523;50524;50525;50526;50527;50528;50529;50530;50531;50532;50533;50534;50535 50527 13 SPPSQSVQLNDSLSK RKLMPSPLKGQHTLKSPPSQSVQLNDSLSK SPPSQSVQLNDSLSKELQPIVYTPEDCRKA K S P S K E 0 0 1 1 0 2 0 0 0 0 2 1 0 0 2 5 0 0 0 1 0 0 15 0 1585.7948 B2R6H3;Q8NI77 B2R6H3 684 698 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 7.9386E-06 94.547 1 1 1.3411 1.2249 6.9118 2 Median 1.2974 1.2862 NaN 1 0 Median 1.3862 1.1665 NaN 1 0 Median 7379000 3563600 3815500 5980600 3036900 2943700 1398500 526670 871830 12320 842 12663 32436;32437 50536;50537 50536 2 SPQNQYPAELMR ______________________________ MVRSPQNQYPAELMRRFELYFQGPSSSKPR R S P M R R 1 1 1 0 0 2 1 0 0 0 1 0 1 0 2 1 0 0 1 0 0 0 12 0 1432.6769 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;C9J8M6;A0A0S2Z441 B3KUD7 14 25 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 9.1115E-05 76.332 1 2.02 2.0921 NaN 1 Median 2.02 2.0921 NaN 1 0 Median NaN NaN NaN 0 0 Median 10347000 3366200 6980400 10347000 3366200 6980400 0 0 0 12321 560 12664 32438 50538 50538 419 1 SPQPDPVDTPASTK DKPTTDEKTTKIACKSPQPDPVDTPASTKQ KSPQPDPVDTPASTKQRPKRNLRKADVEEE K S P T K Q 1 0 0 2 0 1 0 0 0 0 0 1 0 0 4 2 2 0 0 1 0 0 14 0 1438.694 P46013 P46013 2344 2357 MKI67 Antigen KI-67 yes yes 2 2.6004E-05 96.745 2 1 1.7959 2.0302 24.211 3 Median 1.7753 2.0124 1.2464 2 0 Median 3.5767 3.0599 NaN 1 0 Median 404590000 132810000 271790000 288870000 108690000 180180000 115730000 24115000 91611000 12322 1569 12665 32439;32440;32441 50539;50540;50541;50542;50543;50544 50542 6 SPQPDPVGTPTIFK DKPTTHEKTTKIACRSPQPDPVGTPTIFKP RSPQPDPVGTPTIFKPQSKRSLRKADVEEE R S P F K P 0 0 0 1 0 1 0 1 0 1 0 1 0 1 4 1 2 0 0 1 0 0 14 0 1482.7718 P46013 P46013 2223 2236 MKI67 Antigen KI-67 yes yes 2 2.9382E-05 96.229 1 2 3.2868 2.6116 27.172 3 Median 1.5287 1.7252 NaN 1 0 Median 3.3993 2.7413 6.8548 2 0 Median 97570000 31298000 66272000 79026000 26918000 52107000 18545000 4380100 14165000 12323 1569 12666 32442;32443;32444 50545;50546;50547 50545 3 SPQPDPVGTPTIFKPQSK DKPTTHEKTTKIACRSPQPDPVGTPTIFKP PDPVGTPTIFKPQSKRSLRKADVEEESLAL R S P S K R 0 0 0 1 0 2 0 1 0 1 0 2 0 1 5 2 2 0 0 1 0 0 18 1 1923.0102 P46013 P46013 2223 2240 MKI67 Antigen KI-67 yes yes 3 3.2759E-17 112.74 2 2 2.3364 2.7575 16.05 3 Median 2.2834 2.6741 4.3454 2 0 Median 4.1402 3.5129 NaN 1 0 Median 306790000 75904000 230880000 218460000 65668000 152790000 88329000 10236000 78093000 12324 1569 12667 32445;32446;32447;32448 50548;50549;50550;50551;50552;50553;50554 50554 7 SPQPESFK EESMTDDKITEVSCKSPQPESFKTSRSSKQ ITEVSCKSPQPESFKTSRSSKQRLKIPLVK K S P F K T 0 0 0 0 0 1 1 0 0 0 0 1 0 1 2 2 0 0 0 0 0 0 8 0 918.4447 P46013 P46013 2466 2473 MKI67 Antigen KI-67 yes yes 2 0.0015581 107.9 2 2 3.4605 2.9373 22.051 3 Median 1.8199 2.0346 NaN 1 0 Median 3.5773 2.9787 1.9804 2 0 Median 301090000 53164000 247920000 232070000 37407000 194660000 69022000 15757000 53265000 12325 1569 12668 32449;32450;32451;32452 50555;50556;50557;50558;50559;50560 50556 6 SPQPPVEEEDEHFDDTVVCLDTYNCDLHFK GYFEYIEENKYSRAKSPQPPVEEEDEHFDD TVVCLDTYNCDLHFKISRDRLSASSLTMES K S P F K I 0 0 1 5 2 1 4 0 2 0 2 1 0 2 3 1 2 0 1 3 0 0 30 0 3634.5504 B4DLR3;Q00839;Q96BA7;B3KX72;Q5RI18 B4DLR3 230 259 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 4 3.8923E-07 47.647 2 2 0.98292 0.93727 37.557 4 Median 1.1717 1.304 1.633 2 0 Median 0.81582 0.68055 0.19662 2 0 Median 266830000 129470000 137360000 167560000 76334000 91226000 99272000 53135000 46137000 12326 999 12669 32453;32454;32455;32456 50561;50562;50563;50564 50563 4 SPQQSAALPR EASAPKAALEPKESRSPQQSAALPRRYMLR PKESRSPQQSAALPRRYMLREREGAPEPAS R S P P R R 2 1 0 0 0 2 0 0 0 0 1 0 0 0 2 2 0 0 0 0 0 0 10 0 1053.5567 A0A0A6YYG7;Q6IBW4;E5RJN3 A0A0A6YYG7 284 293 NCAPH2 Condensin-2 complex subunit H2 yes no 2 0.0020391 70.908 1 2.28 1.9848 NaN 1 Median NaN NaN NaN 0 0 Median 2.28 1.9848 NaN 1 0 Median 2618700 836720 1781900 0 0 0 2618700 836720 1781900 12327 491 12670 32457 50565 50565 1 SPQSDPADTPTNTK NPTTDEKTTKKILCKSPQSDPADTPTNTKQ KSPQSDPADTPTNTKQRPKRSLKKADVEEE K S P T K Q 1 0 1 2 0 1 0 0 0 0 0 1 0 0 3 2 3 0 0 0 0 0 14 0 1457.6634 P46013 P46013 1861 1874 MKI67 Antigen KI-67 yes yes 2 0.00044894 83.182 1 1 2.7325 2.3061 NaN 1 Median NaN NaN NaN 0 0 Median 2.7325 2.3061 NaN 1 0 Median 1427300 297530 1129800 0 0 0 1427300 297530 1129800 12328 1569 12671 32458;32459 50566;50567 50566 2 SPQVPAAQQMLNFPEK VLADTPSGLVPLHLRSPQVPAAQQMLNFPE PQVPAAQQMLNFPEKNKEKPVDLQNFGLRT R S P E K N 2 0 1 0 0 3 1 0 0 0 1 1 1 1 3 1 0 0 0 1 0 0 16 0 1783.8927 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;B4DYF9 Q58EY4 573 588 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 5.7763E-06 86.772 1 0.98742 0.96914 NaN 1 Median 0.98742 0.96914 NaN 1 0 Median NaN NaN NaN 0 0 Median 20440000 11218000 9221900 20440000 11218000 9221900 0 0 0 12329 1798 12672 32460 50568;50569 50569 1664 2 SPSAIPEQNHSLNDQAK KKLLLKGSQKGICPKSPSAIPEQNHSLNDQ SAIPEQNHSLNDQAKGESHEYVTFSKLEDC K S P A K G 2 0 2 1 0 2 1 0 1 1 1 1 0 0 2 3 0 0 0 0 0 0 17 0 1834.881 Q13129;Q59GL0 Q13129 632 648 RLF Zinc finger protein Rlf yes no 3 8.2262E-05 45.438 1 0.79539 0.8219 NaN 1 Median 0.79539 0.8219 NaN 1 0 Median NaN NaN NaN 0 0 Median 11043000 5826500 5216100 11043000 5826500 5216100 0 0 0 12330 1705 12673 32461 50570;50571 50570 2 SPSDLWK LRNEKEQELDTLKRKSPSDLWKEDLATFIE ELDTLKRKSPSDLWKEDLATFIEELEAVEA K S P W K E 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 2 0 1 0 0 0 0 7 0 831.41267 P11388;Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;B7ZB27;Q6W6M6 P11388 1162 1168 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.029647 69.998 2 2 0.92712 0.91683 21.468 4 Median 0.65212 0.7626 0.51117 2 0 Median 1.3173 1.1059 0.97628 2 0 Median 689760000 406060000 283690000 590470000 362870000 227600000 99284000 43197000 56087000 12331 1471;1679 12674 32462;32463;32464;32465 50572;50573;50574;50575 50573 4 SPSDSSTASTPVAEQIER LDSHRRMAPTPIPTRSPSDSSTASTPVAEQ DSSTASTPVAEQIERALDEVTSSQPPPLPP R S P E R A 2 1 0 1 0 1 2 0 0 1 0 0 0 0 2 5 2 0 0 1 0 0 18 0 1860.8701 Q16643;B3KSQ7;B7Z2Z0;D6R9Q9 Q16643 337 354 DBN1 Drebrin yes no 2 1.6373E-11 100.22 3 0.93946 0.98355 NaN 1 Median 0.93946 0.98355 NaN 1 0 Median NaN NaN NaN 0 0 Median 12692000 6525600 6166500 12692000 6525600 6166500 0 0 0 12332 1773 12675 32466;32467;32468 50576;50577;50578 50576 3 SPSLLQSGAK SALARKKARLSLVIRSPSLLQSGAKKKAQV SLVIRSPSLLQSGAKKKAQVRKAGKP____ R S P A K K 1 0 0 0 0 1 0 1 0 0 2 1 0 0 1 3 0 0 0 0 0 0 10 0 986.53966 Q9BQG0;I3L1L3;B4DE42;I3L2H8 Q9BQG0 1308 1317 MYBBP1A Myb-binding protein 1A yes no 2 4.2554E-08 114.89 2 2 0.94722 1.0295 15.958 3 Plateau 0.94393 1.0295 NaN 1 0 Median 0.96686 0.78143 1.647 2 0 Median 104050000 70269000 33784000 87845000 62309000 25537000 16207000 7960100 8247200 12333 1997 12676 32469;32470;32471;32472 50579;50580;50581;50582;50583 50580 5 SPSPAPAPAPAAAAGPPTR RRKILTQRRERYRQRSPSPAPAPAPAAAAG APAPAPAAAAGPPTRKKSRRERKRSGEAKE R S P T R K 7 1 0 0 0 0 0 1 0 0 0 0 0 0 7 2 1 0 0 0 0 0 19 0 1682.874 A0A024QZH6;Q9H7N4 A0A024QZH6 498 516 SR-A1;SCAF1 Splicing factor, arginine/serine-rich 19 yes no 2 0.052241 33.685 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12334 22 12677 32473 50584 50584 1 SPSPYYSR GWRAAQDRDQIYRRRSPSPYYSRGGYRSRS DQIYRRRSPSPYYSRGGYRSRSRSRSYSPR R S P S R G 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 2 0 0 0 8 0 955.43995 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995;H7C2L4;H7BXF3;Q549U1;Q13595 Q8N1H4 228 235 DKFZp686F18120;TRA2B;HSU53209;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha no no 2 0.0064556 87.181 1 1.5926 1.6533 NaN 1 Median 1.5926 1.6533 NaN 1 0 Median NaN NaN NaN 0 0 Median 20749000 9485400 11264000 20749000 9485400 11264000 0 0 0 12335 889;1716 12678 32474 50585 50585 1 SPSQYHDFAEK RVPGRVGGREGMRGRSPSQYHDFAEKLKMS MRGRSPSQYHDFAEKLKMSPGRSRGPGGDP R S P E K L 1 0 0 1 0 1 1 0 1 0 0 1 0 1 1 2 0 0 1 0 0 0 11 0 1307.5782 W5ZR30;Q9UGU0 W5ZR30 1005 1015 TCF20 Transcription factor 20 yes no 2 0.0084432 50.791 1 0.77204 0.76286 NaN 1 Median 0.77204 0.76286 NaN 1 0 Median NaN NaN NaN 0 0 Median 9372000 4603300 4768700 9372000 4603300 4768700 0 0 0 12336 2100 12679 32475 50586;50587 50587 2 SPSTTYLHTPTPSEDAAIPSK HCRRGLLSNHTGSPRSPSTTYLHTPTPSED LHTPTPSEDAAIPSKSRLKRLISENSVYEK R S P S K S 2 0 0 1 0 0 1 0 1 1 1 1 0 0 4 4 4 0 1 0 0 0 21 0 2199.0695 D6W625;Q13111 D6W625 775 795 CHAF1A Chromatin assembly factor 1 subunit A yes no 3 0.013903 20.737 1 0.9596 0.97607 NaN 1 Median 0.9596 0.97607 NaN 1 0 Median NaN NaN NaN 0 0 Median 12531000 5938900 6592400 12531000 5938900 6592400 0 0 0 12337 1204 12680 32476 50588 50588 1 SPTLYGISHDDLK VNWLGYAYLYIRMLRSPTLYGISHDDLKGD LRSPTLYGISHDDLKGDPLLDQRRLDLVHT R S P L K G 0 0 0 2 0 0 0 1 1 1 2 1 0 0 1 2 1 0 1 0 0 0 13 0 1444.7198 O75643;A4FU77;Q9H8B9 O75643 932 944 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0015018 72.652 1 1 0.97083 0.76815 NaN 1 Median NaN NaN NaN 0 0 Median 0.97083 0.76815 NaN 1 0 Median 5038700 2432700 2606000 0 0 0 5038700 2432700 2606000 12338 1411 12681 32477;32478 50589;50590 50589 2 SPTWFGIPR EFLYVEGLPEGIPFRSPTWFGIPRLERIVR EGIPFRSPTWFGIPRLERIVRGSNKIKFVV R S P P R L 0 1 0 0 0 0 0 1 0 1 0 0 0 1 2 1 1 1 0 0 0 0 9 0 1059.5502 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 579 587 GTF2I General transcription factor II-I yes no 2 0.0028653 82.241 2 0.95719 1.0009 NaN 1 Median 0.95719 1.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median 13063000 6393800 6669300 13063000 6393800 6669300 0 0 0 12339 789 12682 32479;32480 50591;50592 50591 2 SPVEVAQDVLAAVGK PFRSAFMDTTTAQGRSPVEVAQDVLAAVGK SPVEVAQDVLAAVGKKKKDVILADLLPSLA R S P G K K 3 0 0 1 0 1 1 1 0 0 1 1 0 0 1 1 0 0 0 4 0 0 15 0 1481.809 J3KRS1;A0A0C4DGQ8;Q6IAN0 J3KRS1 68 82 DHRS7B Dehydrogenase/reductase SDR family member 7B yes no 2 0.0012506 73.632 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12340 516 12683 32481 50593 50593 1 SPVFSDEDSDLDFDISK MGERAENSSKSDLRKSPVFSDEDSDLDFDI VFSDEDSDLDFDISKLEQQSKVQNKGQGKP K S P S K L 0 0 0 5 0 0 1 0 0 1 1 1 0 2 1 4 0 0 0 1 0 0 17 0 1914.8371 B3KPV5;O00566;U3KQ48 B3KPV5 163 179 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 0.0074919 48.659 1 2.1423 2.1951 NaN 1 Median 2.1423 2.1951 NaN 1 0 Median NaN NaN NaN 0 0 Median 10580000 3475200 7105100 10580000 3475200 7105100 0 0 0 12341 924 12684 32482 50594 50594 0 SPWCYTTDPR AGLTMNYCRNPDADKSPWCYTTDPRVRWEF PDADKSPWCYTTDPRVRWEFCNLKKCSETP K S P P R V 0 1 0 1 1 0 0 0 0 0 0 0 0 0 2 1 2 1 1 0 0 0 10 0 1281.5448 CON__P06868;A0A0F7G8J1 CON__P06868 441 450 yes no 2 1.3364E-07 107.57 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9455500 9455500 0 0 0 0 9455500 9455500 0 + 12342 1157 12685 32483;32484 50595;50596 50595 2 SPYLFSCGEDK TGHISTVRGVIVSTRSPYLFSCGEDKQVKC VSTRSPYLFSCGEDKQVKCWDLEYNKVIRH R S P D K Q 0 0 0 1 1 0 1 1 0 0 1 1 0 1 1 2 0 0 1 0 0 0 11 0 1301.5598 O43660;H0YA24 O43660 258 268 PLRG1 Pleiotropic regulator 1 yes no 2 0.030186 38.804 1 1.6541 1.6718 NaN 1 Median 1.6541 1.6718 NaN 1 0 Median NaN NaN NaN 0 0 Median 5609300 1732100 3877200 5609300 1732100 3877200 0 0 0 12343 1386 12686 32485 50597 50597 1 SPYQEFTDHLVK SYLTPDLWKETVFTKSPYQEFTDHLVKTHT FTKSPYQEFTDHLVKTHTRVSVQRTQAPAV K S P V K T 0 0 0 1 0 1 1 0 1 0 1 1 0 1 1 1 1 0 1 1 0 0 12 0 1462.7092 P15880;Q8N5L9;Q3KQT6;H0YEN5;Q8J014;E9PQD7;Q9BSW5;O60249;A4D0Y7;Q8NI62 P15880 264 275 RPS2;rps2;LOC392781;OK/KNS-cl.6 40S ribosomal protein S2 no no 2;3 1.1232E-17 138.63 3 4 0.91506 0.74254 25.907 7 Median 1.0483 1.2388 4.047 3 0 Plateau 0.87283 0.7387 1.5853 4 0 Median 799400000 393550000 405850000 584890000 280680000 304210000 214510000 112860000 101640000 12344 1485;1930 12687 32486;32487;32488;32489;32490;32491;32492 50598;50599;50600;50601;50602;50603;50604;50605;50606;50607;50608 50599 11 SPYTVTVGQACNPSACR VHTVHVTFAGVPIPRSPYTVTVGQACNPSA YTVTVGQACNPSACRAVGRGLQPKGVRVKE R S P C R A 2 1 1 0 2 1 0 1 0 0 0 0 0 0 2 2 2 0 1 2 0 0 17 0 1866.8353 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 468 484 FLNA Filamin-A yes no 2 7.1332E-13 120.87 3 1.2421 1.238 NaN 1 Median 1.2421 1.238 NaN 1 0 Median NaN NaN NaN 0 0 Median 8934900 4600900 4334000 8934900 4600900 4334000 0 0 0 12345 1504 12688 32493;32494;32495 50609;50610;50611;50612;50613 50612 5 SQAASILTK GDVFDPHGTLSGGARSQAASILTKFQELKD LSGGARSQAASILTKFQELKDVQDELRIKE R S Q T K F 2 0 0 0 0 1 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 9 0 917.5182 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 669 677 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0056063 66.299 2 1 0.91 1.0288 17.458 3 Median 0.87092 0.9891 5.5712 2 0 Median 1.6581 1.3279 NaN 1 0 Median 318900000 171100000 147800000 298480000 163650000 134830000 20425000 7446900 12978000 12346 69 12689 32496;32497;32498 50614;50615;50616 50614 3 SQACEPSEPEIEIK GNKGKGKGKGKGKPKSQACEPSEPEIEIKL KSQACEPSEPEIEIKLPKLRTLDVFSGCGG K S Q I K L 1 0 0 0 1 1 4 0 0 2 0 1 0 0 2 2 0 0 0 0 0 0 14 0 1615.74 A0A024R7E3;P26358;Q59FP7;I6L9H2;B3KVA0 A0A024R7E3 1184 1197 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.00013865 78.692 2 0.60766 0.62862 9.4595 2 Median 0.60766 0.62862 9.4595 2 0 Median NaN NaN NaN 0 0 Median 31497000 19022000 12475000 31497000 19022000 12475000 0 0 0 12347 222 12690 32499;32500 50617;50618;50619;50620;50621 50618 5 SQAFIEMETR EPYGKIKNYILMRMKSQAFIEMETREDAMA LMRMKSQAFIEMETREDAMAMVDHCLKKAL K S Q T R E 1 1 0 0 0 1 2 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 10 0 1210.5652 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;H0Y8T4;Q5CZA7;B4DF66;B3KM87;B4DRS1;Q9H4N1 D6REM6 533 542 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 2 0.0019013 62.303 2 1 2.1122 2.443 96.829 3 Median 2.2392 2.5103 3.8389 2 0 Median 0.53483 0.4695 NaN 1 0 Median 121460000 44739000 76719000 118950000 43185000 75760000 2512500 1553500 959020 12348 542 12691 32501;32502;32503 50622;50623;50624;50625 50624 399 4 SQALLFIK HVLLDLSSHEKDKVRSQALLFIKRMYEKEQ HEKDKVRSQALLFIKRMYEKEQLREYVEKF R S Q I K R 1 0 0 0 0 1 0 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 8 0 918.55385 A0A087WUE9;Q4LE61;B7Z6F7;A0A024R0R6;Q92797 A0A087WUE9 730 737 SYMPK;SYMPK variant protein Symplekin yes no 2 0.019774 58.917 1 1.0128 1.0295 NaN 1 Median 1.0128 1.0295 NaN 1 0 Median NaN NaN NaN 0 0 Median 9158000 4528400 4629600 9158000 4528400 4629600 0 0 0 12349 56 12692 32504 50626 50626 1 SQAPLESSLDSLGDVFLDSGR VESLESLYFTPIPARSQAPLESSLDSLGDV SSLDSLGDVFLDSGRKTRSARRRTTQIINI R S Q G R K 1 1 0 3 0 1 1 2 0 0 4 0 0 1 1 5 0 0 0 1 0 0 21 0 2192.0597 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1768 1788 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.8526E-05 47.545 1 1.2778 1.3314 NaN 1 Median 1.2778 1.3314 NaN 1 0 Median NaN NaN NaN 0 0 Median 5160400 2433500 2726900 5160400 2433500 2726900 0 0 0 12350 186;1747 12693 32505 50627;50628;50629;50630 50629 4 SQAPLESSLDSLGDVFLDSGRK VESLESLYFTPIPARSQAPLESSLDSLGDV SLDSLGDVFLDSGRKTRSARRRTTQIINIT R S Q R K T 1 1 0 3 0 1 1 2 0 0 4 1 0 1 1 5 0 0 0 1 0 0 22 1 2320.1547 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1768 1789 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 2.7113E-10 86.625 2 2 1.3154 1.3191 15.836 4 Median 1.0101 1.1422 16.753 2 0 Median 1.6328 1.4086 5.6848 2 0 Median 99225000 41915000 57310000 44746000 22111000 22634000 54479000 19804000 34676000 12351 186;1747 12694 32506;32507;32508;32509 50631;50632;50633;50634;50635;50636;50637;50638 50634 8 SQASTTVDINTQVEK SVEADKSSPGIHLERSQASTTVDINTQVEK SQASTTVDINTQVEKEVPPGSAIIHIKKHQ R S Q E K E 1 0 1 1 0 2 1 0 0 1 0 1 0 0 0 2 3 0 0 2 0 0 15 0 1619.8002 Q14676;B4DYH4 Q14676 513 527 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 1.1414E-38 170.66 3 2 1.191 1.0217 13.853 4 Median 0.97526 0.98836 23.763 2 0 Median 1.2752 1.0217 0.16695 2 0 Median 38659000 20406000 18253000 31659000 17345000 14314000 7000000 3060600 3939300 12352 1738 12695 32510;32511;32512;32513;32514 50639;50640;50641;50642;50643;50644;50645;50646;50647 50640 9 SQDFGNLFSFPSYSQK GKSKASPEKSLHDKKSQDFGNLFSFPSYSQ QDFGNLFSFPSYSQKSEDDSAKFDSNEEDS K S Q Q K S 0 0 1 1 0 2 0 1 0 0 1 1 0 3 1 4 0 0 1 0 0 0 16 0 1850.8475 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1413 1428 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 3.2197E-10 112.51 2 2 0.85073 0.82299 22.23 4 Median 0.60441 0.6738 2.594 2 0 Median 1.2 0.98938 0.34806 2 0 Median 191580000 105830000 85748000 119840000 72905000 46937000 71734000 32923000 38811000 12353 1679 12696 32515;32516;32517;32518 50648;50649;50650;50651;50652;50653;50654 50648 7 SQDIYLR IRHNKDRKVRRKEPKSQDIYLRLLVKLYRF KVRRKEPKSQDIYLRLLVKLYRFLARRTNS K S Q L R L 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 7 0 893.46068 G3V203;A0A024QZD1;J3QQ67;Q07020;F8VYV2;B4DDY5;A0A075B7A0;F8VXR6 G3V203 20 26 RPL18 60S ribosomal protein L18 yes no 2 0.023524 90.986 2 0.92583 1.0766 5.4705 2 Median 0.92583 1.0766 5.4705 2 0 Median NaN NaN NaN 0 0 Median 518960000 279750000 239210000 518960000 279750000 239210000 0 0 0 12354 16 12697 32519;32520 50655;50656;50657 50655 3 SQDLESVQEVGGSYWQR GTVQQKRRQKMQQKKSQDLESVQEVGGSYW DLESVQEVGGSYWQRVTLILELLQHKKKLR K S Q Q R V 0 1 0 1 0 3 2 2 0 0 1 0 0 0 0 3 0 1 1 2 0 0 17 0 1966.9021 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8 B2RWN5 1190 1206 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 3.1229E-45 170.26 2 2 0.86392 0.86474 11.301 4 Median 0.83694 0.91232 0.87307 2 0 Median 0.91915 0.76994 9.7206 2 0 Median 126510000 70478000 56035000 87928000 51373000 36555000 38585000 19105000 19480000 12355 897 12698 32521;32522;32523;32524 50658;50659;50660;50661;50662;50663;50664;50665;50666;50667;50668;50669;50670 50670 13 SQDVELWEGEVVK VDNTFAEEFTTQNQKSQDVELWEGEVVKEL QKSQDVELWEGEVVKELSVEEQIKRNRYYD K S Q V K E 0 0 0 1 0 1 3 1 0 0 1 1 0 0 0 1 0 1 0 3 0 0 13 0 1516.7409 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 565 577 LIMA1 LIM domain and actin-binding protein 1 yes no 2 1.3684E-05 99.752 2 2 3.8053 3.0964 23.95 3 Median 1.9842 2.1991 NaN 1 0 Median 4.0904 3.2865 8.4255 2 0 Median 94496000 16000000 78496000 77130000 13116000 64013000 17366000 2883900 14482000 12356 1010 12699 32525;32526;32527;32528 50671;50672;50673;50674;50675;50676 50673 6 SQEDTEAVFK LPLWISWAEWSEGAKSQEDTEAVFKKALLA SEGAKSQEDTEAVFKKALLAVIGADSVTLK K S Q F K K 1 0 0 1 0 1 2 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 10 0 1152.5299 B3KQ21;Q9NYH9;B3KX32;Q9P1J8 B3KQ21 453 462 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.00015294 95.608 2 0.97543 1.0822 1.1201 2 Median 0.97543 1.0822 1.1201 2 0 Median NaN NaN NaN 0 0 Median 165580000 82930000 82645000 165580000 82930000 82645000 0 0 0 12357 925 12700 32529;32530 50677;50678;50679;50680;50681 50681 5 SQEDTEAVFKK LPLWISWAEWSEGAKSQEDTEAVFKKALLA EGAKSQEDTEAVFKKALLAVIGADSVTLKN K S Q K K A 1 0 0 1 0 1 2 0 0 0 0 2 0 1 0 1 1 0 0 1 0 0 11 1 1280.6248 B3KQ21;Q9NYH9;B3KX32;Q9P1J8 B3KQ21 453 463 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2;3 0.0043091 45.433 3 0.93803 1.0968 5.8934 2 Median 0.93803 1.0968 5.8934 2 0 Median NaN NaN NaN 0 0 Median 81895000 49012000 32883000 81895000 49012000 32883000 0 0 0 12358 925 12701 32531;32532;32533 50682;50683;50684 50682 3 SQEIFLNLK GIQQLKDAAEREKLKSQEIFLNLKTALEKY EREKLKSQEIFLNLKTALEKYHDGIEKAAE K S Q L K T 0 0 1 0 0 1 1 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1090.6023 A0A024R8Y0;Q9BZD4;E9PQC4 A0A024R8Y0 419 427 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 0.0038088 70.856 1 0.87914 0.90893 NaN 1 Median 0.87914 0.90893 NaN 1 0 Median NaN NaN NaN 0 0 Median 24946000 14230000 10716000 24946000 14230000 10716000 0 0 0 12359 264 12702 32534 50685 50685 1 SQFEELCAELLQK ECFMNDKDVSGKMNRSQFEELCAELLQKIE NRSQFEELCAELLQKIEVPLYSLLEQTHLK R S Q Q K I 1 0 0 0 1 2 3 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 13 0 1593.7709 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 304 316 HSPH1 Heat shock protein 105 kDa yes no 2 0.00020025 70.488 3 1.2358 1.2339 NaN 1 Median 1.2358 1.2339 NaN 1 0 Median NaN NaN NaN 0 0 Median 16171000 3646000 12525000 16171000 3646000 12525000 0 0 0 12360 390 12703 32535;32536;32537 50686;50687;50688;50689 50687 4 SQFYFLTK VPESFTSEAYQWLNRSQFYFLTKSQSLLTF AYQWLNRSQFYFLTKSQSLLTFSTKSPEEK R S Q T K S 0 0 0 0 0 1 0 0 0 0 1 1 0 2 0 1 1 0 1 0 0 0 8 0 1032.528 A8K330;Q8IWA0 A8K330 654 661 WDR75 WD repeat-containing protein 75 yes no 2 0.0010029 117.72 2 2 1.0752 1.0203 0.35044 4 Median 0.89268 1.0216 0.47296 2 0 Median 1.2884 1.0199 0.34094 2 0 Median 367780000 184100000 183680000 338010000 171150000 166860000 29767000 12947000 16820000 12361 716 12704 32538;32539;32540;32541 50690;50691;50692;50693;50694 50690 5 SQGCSEQVLTVLK SWVQSYCRLSHCRSRSQGCSEQVLTVLKTV SRSQGCSEQVLTVLKTVSLLDENNVSSYLS R S Q L K T 0 0 0 0 1 2 1 1 0 0 2 1 0 0 0 2 1 0 0 2 0 0 13 0 1447.7341 P78527 P78527 3290 3302 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.6073E-09 123.67 2 2 0.45198 0.42513 54.688 4 Median 0.62338 0.68137 1.377 2 0 Median 0.33392 0.26432 1.873 2 0 Median 117510000 74589000 42921000 89264000 53585000 35679000 28245000 21003000 7241500 12362 1665 12705 32542;32543;32544;32545 50695;50696;50697;50698;50699;50700;50701;50702;50703 50696 9 SQGGVQPIPSQGGK HCGAFSGSDSSRTSKSQGGVQPIPSQGGKL KSQGGVQPIPSQGGKLEIAGTVVGHWAGSR K S Q G K L 0 0 0 0 0 3 0 4 0 1 0 1 0 0 2 2 0 0 0 1 0 0 14 0 1338.6892 Q9NZB2 Q9NZB2 933 946 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 2 0.0024866 65.5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2453000 0 2453000 2453000 0 2453000 0 0 0 12363 2086 12706 32546 50704 50704 1 SQGLSQLYHNQSQGLLSQLQGQSK PTQSQFGEMGGKFMKSQGLSQLYHNQSQGL NQSQGLLSQLQGQSKDMPPRFSKKGQLNAD K S Q S K D 0 0 1 0 0 7 0 3 1 0 5 1 0 0 0 5 0 0 1 0 0 0 24 0 2628.3256 D3DQV9;Q59G42;B4DZF2;P78344;Q2TU89 D3DQV9 432 455 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 3 0.0083322 43.523 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12364 1054 12707 32547 50705 50705 1 SQGNDILCLSLPDKPPPQPQQWNVR TPRTPSSAKEKIEGRSQGNDILCLSLPDKP LPDKPPPQPQQWNVRSPARNKDTPACSRRS R S Q V R S 0 1 2 2 1 4 0 1 0 1 3 1 0 0 5 2 0 1 0 1 0 0 25 1 2886.4447 P42695;Q96FA6 P42695 1449 1473 NCAPD3 Condensin-2 complex subunit D3 yes no 3 3.0018E-16 93.093 2 1.844 1.564 1.2851 2 Median NaN NaN NaN 0 0 Median 1.844 1.564 1.2851 2 0 Median 20443000 6515300 13927000 0 0 0 20443000 6515300 13927000 12365 1565 12708 32548;32549 50706;50707;50708;50709 50708 4 SQHDILQMICSK RKSGNLPSKRVSISRSQHDILQMICSKRRS ISRSQHDILQMICSKRRSGASEANLIVAKS R S Q S K R 0 0 0 1 1 2 0 0 1 2 1 1 1 0 0 2 0 0 0 0 0 0 12 0 1458.6959 P46013;Q70L73 P46013 634 645 MKI67 Antigen KI-67 no no 2;3 7.6821E-06 100.19 4 2.1598 2.3941 1.944 2 Median 2.1598 2.3941 1.944 2 0 Median NaN NaN NaN 0 0 Median 115260000 30163000 85093000 115260000 30163000 85093000 0 0 0 12366 1569;1864 12709 32550;32551;32552;32553 50710;50711;50712;50713 50711 1343 4 SQIFSTASDNQPTVTIK MTKLIPRNTVVPTKKSQIFSTASDNQPTVT IFSTASDNQPTVTIKVYEGERPLTKDNHLL K S Q I K V 1 0 1 1 0 2 0 0 0 2 0 1 0 1 1 3 3 0 0 1 0 0 17 0 1835.9265 V9HWB4;P11021 V9HWB4 448 464 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 5.0149E-09 103.83 2 2 0.66361 0.60501 37.169 4 Median 0.78007 0.8196 0.48073 2 0 Median 0.53534 0.4315 5.3459 2 0 Median 84216000 49976000 34241000 65371000 37756000 27615000 18845000 12220000 6625400 12367 1466 12710 32554;32555;32556;32557 50714;50715;50716;50717;50718;50719;50720;50721;50722;50723;50724 50716 11 SQIHDIVLVGGSTR LDPVEKALRDAKLDKSQIHDIVLVGGSTRI KSQIHDIVLVGGSTRIPKIQKLLQDFFNGK K S Q T R I 0 1 0 1 0 1 0 2 1 2 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1480.7998 E9PN89;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2 V9HW22 329 342 HSPA8;HEL-S-72p Heat shock cognate 71 kDa protein no no 2;3 7.5568E-05 81.494 5 4 1.357 1.2309 16.088 6 Median 1.3589 1.5506 10.83 3 0 Plateau 1.3771 1.1737 7.3547 3 0 Plateau 286520000 117000000 169520000 209550000 84142000 125410000 76973000 32855000 44119000 12368 1467;1248 12711 32558;32559;32560;32561;32562;32563;32564;32565;32566 50725;50726;50727;50728;50729;50730;50731;50732;50733;50734;50735;50736;50737;50738;50739;50740;50741 50732 17 SQIPLSK HIWNMLNPPAEVTTKSQIPLSKIKTLFPLI PPAEVTTKSQIPLSKIKTLFPLIEAKKKDQ K S Q S K I 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 0 0 0 0 7 0 771.44905 P13010;Q53T09 P13010 526 532 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.01154 108.09 2 0.37158 0.42639 1.4967 2 Median 0.37158 0.42639 1.4967 2 0 Median NaN NaN NaN 0 0 Median 375730000 272150000 103580000 375730000 272150000 103580000 0 0 0 12369 1476 12712 32567;32568 50742;50743;50744;50745 50745 4 SQISVYSELNK PEAKRLLINLYKLVKSQISVYSELNKIEVS KLVKSQISVYSELNKIEVSFRELQKLNQEK K S Q N K I 0 0 1 0 0 1 1 0 0 1 1 1 0 0 0 3 0 0 1 1 0 0 11 0 1266.6456 Q9H8H0 Q9H8H0 680 690 NOL11 Nucleolar protein 11 yes yes 2 5.8219E-05 105.98 2 2 1.1293 1.0336 8.4775 4 Median 1.0018 1.1271 5.2185 2 0 Median 1.2371 0.98253 0.14486 2 0 Median 221820000 113380000 108440000 188840000 98384000 90458000 32980000 15000000 17981000 12370 2042 12713 32569;32570;32571;32572 50746;50747;50748;50749;50750;50751 50749 5 SQKEEDEQEDLTK KSGKKGQASLYGKRRSQKEEDEQEDLTKDM RRSQKEEDEQEDLTKDMEDPTPVPNIEEVV R S Q T K D 0 0 0 2 0 2 4 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 13 1 1577.7057 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 357 369 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 0.046841 64.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2270200 2270200 0 2270200 2270200 0 0 0 0 12371 1798 12714 32573 50752 50752 1 SQLDIIIHSLK RHIEIFTDLSSRFSKSQLDIIIHSLKKCDI RFSKSQLDIIIHSLKKCDISLQFFLPFSLG K S Q L K K 0 0 0 1 0 1 0 0 1 3 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1265.7343 P13010;Q53TC2 P13010 145 155 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 0.00043756 93.839 6 3 0.32745 0.34517 25.185 7 Median 0.3578 0.40258 10.053 4 0 Median 0.29318 0.24896 5.9182 3 0 Median 586070000 463430000 122630000 438550000 350880000 87665000 147520000 112550000 34967000 12372 1476 12715 32574;32575;32576;32577;32578;32579;32580;32581;32582 50753;50754;50755;50756;50757;50758;50759;50760;50761;50762;50763;50764;50765;50766;50767;50768 50763 16 SQLDIIIHSLKK RHIEIFTDLSSRFSKSQLDIIIHSLKKCDI FSKSQLDIIIHSLKKCDISLQFFLPFSLGK K S Q K K C 0 0 0 1 0 1 0 0 1 3 2 2 0 0 0 2 0 0 0 0 0 0 12 1 1393.8293 P13010;Q53TC2 P13010 145 156 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 0.0052521 39.006 1 0.3673 0.31778 NaN 1 Median NaN NaN NaN 0 0 Median 0.3673 0.31778 NaN 1 0 Median 3885800 2775800 1110000 0 0 0 3885800 2775800 1110000 12373 1476 12716 32583 50769 50769 1 SQLELLISPTCSCK VKKFNQVLGDDEKLRSQLELLISPTCSCKQ RSQLELLISPTCSCKQADICVREIARKLAN R S Q C K Q 0 0 0 0 2 1 1 0 0 1 3 1 0 0 1 3 1 0 0 0 0 0 14 0 1634.8008 G1UI16;Q29RF7 G1UI16 571 584 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.023775 43.991 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12374 1270 12717 32584 50770 50770 1 SQLLGSAHEVQR LNERWRSLQQLAEERSQLLGSAHEVQRFHR EERSQLLGSAHEVQRFHRDADETKEWIEEK R S Q Q R F 1 1 0 0 0 2 1 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1323.6895 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16;B4DGT1 A0A0D9SF54 1206 1217 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 5.7572E-19 149.96 1 4 3.0068 2.5174 37.681 3 Median 1.2485 1.3655 NaN 1 0 Median 3.0986 2.614 5.3266 2 0 Median 42760000 16002000 26758000 30579000 14488000 16091000 12181000 1513800 10667000 12375 523 12718 32585;32586;32587;32588;32589 50771;50772;50773;50774;50775;50776 50772 6 SQLLQYVYNLVPR AEINILLCGDPGTSKSQLLQYVYNLVPRGQ SKSQLLQYVYNLVPRGQYTSGKGSSAVGLT K S Q P R G 0 1 1 0 0 2 0 0 0 0 3 0 0 0 1 1 0 0 2 2 0 0 13 0 1591.8722 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RG31 B4DLA6 477 489 MCM4 DNA replication licensing factor MCM4 yes no 2 6.3966E-05 95.573 2 1.0701 1.1391 1.4877 2 Median 1.0701 1.1391 1.4877 2 0 Median NaN NaN NaN 0 0 Median 51709000 24560000 27148000 51709000 24560000 27148000 0 0 0 12376 235 12719 32590;32591 50777;50778;50779 50777 3 SQLLSYIDR GNINICLMGDPGVAKSQLLSYIDRLAPRSQ DPGVAKSQLLSYIDRLAPRSQYTTGRGSSG K S Q D R L 0 1 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 1 0 0 0 9 0 1093.5768 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;Q9H4N9 B3KUD7 281 289 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.00026447 104.2 1 2 1.1285 1.2341 38.216 3 Plateau 1.1285 1.2341 NaN 1 0 Median 0.75897 0.64208 8.6492 2 0 Median 41599000 20402000 21197000 35007000 16696000 18311000 6592100 3705600 2886500 12377 560 12720 32592;32593;32594 50780;50781;50782;50783;50784 50780 5 SQLNCLLLSGR RIQNPRGLEHKVYLKSQLNCLLLSGRDNWE VYLKSQLNCLLLSGRDNWEDEPQEPQEPNK K S Q G R D 0 1 1 0 1 1 0 1 0 0 4 0 0 0 0 2 0 0 0 0 0 0 11 0 1259.6656 Q6RFH5;E9PS41 Q6RFH5 312 322 WDR74 WD repeat-containing protein 74 yes no 2 2.8993E-10 133.42 2 2 1.1098 0.92113 17.694 3 Median 0.64784 0.6832 NaN 1 0 Median 1.1135 0.92797 1.0451 2 0 Median 81778000 54652000 27126000 63782000 46882000 16900000 17996000 7770600 10226000 12378 1859 12721 32595;32596;32597;32598 50785;50786;50787;50788;50789;50790;50791 50785 7 SQMDGLIPGVEPR CIHSPVVNELMRGIRSQMDGLIPGVEPREM IRSQMDGLIPGVEPREMAAMCLGLAHSLSR R S Q P R E 0 1 0 1 0 1 1 2 0 1 1 0 1 0 2 1 0 0 0 1 0 0 13 0 1397.6973 Q9Y2X3;B3KN82;B4DUY3 Q9Y2X3 121 133 NOP58 Nucleolar protein 58 yes no 2 5.8702E-19 140.14 3 5 1.0582 0.86334 36.739 7 Median 1.0917 1.243 0.95507 2 0 Median 0.97663 0.84905 30.01 5 0 Median 281160000 139290000 141870000 227060000 109110000 117950000 54099000 30179000 23920000 12379 2129 12722;12723 32599;32600;32601;32602;32603;32604;32605;32606 50792;50793;50794;50795;50796;50797;50798;50799;50800;50801;50802;50803;50804;50805;50806;50807 50792 1961 16 SQNEAVCEGLR IATLQKLLRQLEMQKSQNEAVCEGLRTQIR EMQKSQNEAVCEGLRTQIRELWDRLQIPEE K S Q L R T 1 1 1 0 1 1 2 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1261.5721 A0A024RC67;O43663 A0A024RC67 230 240 PRC1 Protein regulator of cytokinesis 1 yes no 2 1.2223E-05 107.95 2 2 1.076 0.89593 27.573 3 Median 0.58183 0.59327 NaN 1 0 Median 1.119 0.94713 7.8589 2 0 Median 50321000 34001000 16320000 36534000 27349000 9184800 13786000 6651200 7135000 12380 353 12724 32607;32608;32609;32610 50808;50809;50810;50811 50808 4 SQNIVTDSSSLSAEAIR EIQGHQPRIDDIFERSQNIVTDSSSLSAEA NIVTDSSSLSAEAIRQRLADLKQLWGLLIE R S Q I R Q 2 1 1 1 0 1 1 0 0 2 1 0 0 0 0 5 1 0 0 1 0 0 17 0 1776.8854 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 1462 1478 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 4.1455E-09 98.582 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35907000 0 35907000 31518000 0 31518000 4388900 0 4388900 12381 415 12725 32611;32612;32613 50812;50813;50814 50813 3 SQNTELASTASLLR LERISRLEEKVKTLKSQNTELASTASLLRE KSQNTELASTASLLREQVAQLKQKVLSHVN K S Q L R E 2 1 1 0 0 1 1 0 0 0 3 0 0 0 0 3 2 0 0 0 0 0 14 0 1489.7736 P17535;U3KPR5 P17535 305 318 JUND Transcription factor jun-D yes no 2 1.3567E-06 108.68 2 2 0.80365 0.73039 7.0803 4 Median 0.66556 0.71566 12.092 2 0 Median 0.86371 0.73039 0.16483 2 0 Median 95924000 53537000 42387000 82709000 46931000 35779000 13215000 6606600 6608500 12382 1492 12726 32614;32615;32616;32617 50815;50816;50817;50818;50819;50820 50818 6 SQPAASTLESK AGNSDSMCLRSRKTKSQPAASTLESKSVQR RKTKSQPAASTLESKSVQRVTRSVKRCAEN K S Q S K S 2 0 0 0 0 1 1 0 0 0 1 1 0 0 1 3 1 0 0 0 0 0 11 0 1117.5615 P46013 P46013 3207 3217 MKI67 Antigen KI-67 yes yes 2 0.02235 42.802 1 2.2379 2.42 NaN 1 Median 2.2379 2.42 NaN 1 0 Median NaN NaN NaN 0 0 Median 36324000 11573000 24751000 36324000 11573000 24751000 0 0 0 12383 1569 12727 32618 50821 50821 1 SQPDPVDTPTSSK DKPTTHEKTTKIACRSQPDPVDTPTSSKPQ CRSQPDPVDTPTSSKPQSKRSLRKVDVEEE R S Q S K P 0 0 0 2 0 1 0 0 0 0 0 1 0 0 3 3 2 0 0 1 0 0 13 0 1357.6361 P46013 P46013 1496 1508 MKI67 Antigen KI-67 yes yes 2 0.00011395 84.882 2 2 2.4601 2.3524 16.795 4 Median 1.7723 2.0505 0.70827 2 0 Median 3.4427 2.7388 2.7939 2 0 Median 484770000 172250000 312520000 451710000 165130000 286580000 33065000 7121800 25943000 12384 1569 12728 32619;32620;32621;32622 50822;50823;50824;50825;50826;50827;50828;50829 50826 8 SQPDPVDTPTSSKPQSK DKPTTHEKTTKIACRSQPDPVDTPTSSKPQ PDPVDTPTSSKPQSKRSLRKVDVEEEFFAL R S Q S K R 0 0 0 2 0 2 0 0 0 0 0 2 0 0 4 4 2 0 0 1 0 0 17 1 1797.8745 P46013 P46013 1496 1512 MKI67 Antigen KI-67 yes yes 2;3 3.1368E-05 78.486 3 4 3.5833 3.0565 20.371 7 Median 1.8464 2.135 5.1884 3 0 Median 3.6823 3.1195 4.2614 4 0 Median 340420000 84500000 255920000 170040000 51105000 118940000 170380000 33395000 136980000 12385 1569 12729 32623;32624;32625;32626;32627;32628;32629 50830;50831;50832;50833;50834;50835;50836;50837;50838 50832 9 SQPFVDHVFTFTILDNR ELLIQIFSTPRYHPKSQPFVDHVFTFTILD PFVDHVFTFTILDNRIWFRNFQIIEEDAAL K S Q N R I 0 1 1 2 0 1 0 0 1 1 1 0 0 3 1 1 2 0 0 2 0 0 17 0 2035.0163 Q8TDN6 Q8TDN6 198 214 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2;3 9.269E-10 94.882 2 3 1.2106 1.0447 23.938 5 Median 0.84685 0.96115 2.501 2 0 Median 1.2524 1.0932 27.056 3 0 Median 420040000 204240000 215800000 232290000 125140000 107150000 187740000 79095000 108650000 12386 1934 12730 32630;32631;32632;32633;32634 50839;50840;50841;50842;50843;50844;50845;50846;50847 50847 9 SQQCQGNELTRPSASSQEK AETGGTHKRDFSEIKSQQCQGNELTRPSAS QGNELTRPSASSQEKSSGKSQDVQRESEPL K S Q E K S 1 1 1 0 1 4 2 1 0 0 1 1 0 0 1 4 1 0 0 0 0 0 19 1 2133.9709 A0A024R0F1;Q9UNY4 A0A024R0F1 221 239 TTF2 Transcription termination factor 2 yes no 3 4.6289E-06 70.235 2 2 0.92912 0.89533 46.791 4 Median 0.53872 0.60483 21.488 2 0 Median 1.5348 1.2936 18.061 2 0 Median 26796000 12965000 13831000 12086000 8105300 3981100 14710000 4859500 9850200 12387 44 12731 32635;32636;32637;32638 50848;50849;50850;50851;50852 50850 5 SQQESWDLEEK DNMKHLLELNKLIMKSQQESWDLEEKLLDI LIMKSQQESWDLEEKLLDIRKKRLQLKQAS K S Q E K L 0 0 0 1 0 2 3 0 0 0 1 1 0 0 0 2 0 1 0 0 0 0 11 0 1377.6048 B3KVZ3;A0A0S2Z5T0;Q9H3R5;H0Y9E6 B3KVZ3 124 134 CENPH Centromere protein H yes no 2 0.0002095 92.239 1 2 1.0796 0.86555 5.7555 2 Median NaN NaN NaN 0 0 Median 1.0796 0.86555 5.7555 2 0 Median 8865600 6257200 2608500 3654700 3654700 0 5210900 2602400 2608500 12388 585 12732 32639;32640;32641 50853;50854;50855 50853 3 SQQLDSNVTMPK STVRQNVNKHRSHWKSQQLDSNVTMPKSED HWKSQQLDSNVTMPKSEDEEGWKKFCLGEK K S Q P K S 0 0 1 1 0 2 0 0 0 0 1 1 1 0 1 2 1 0 0 1 0 0 12 0 1346.65 H0YDP6;H0YEL0;O14893 H0YDP6 115 126 GEMIN2 Gem-associated protein 2 yes no 2 0.00058415 73.067 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3725500 0 3725500 3725500 0 3725500 0 0 0 12389 1290 12733 32642 50856 50856 985 1 SQQQPTPVTPK FGTEEPAYSTRRVTRSQQQPTPVTPKKYPL RVTRSQQQPTPVTPKKYPLRQTRSSGSETE R S Q P K K 0 0 0 0 0 3 0 0 0 0 0 1 0 0 3 1 2 0 0 1 0 0 11 0 1209.6354 O95251 O95251 80 90 KAT7 Histone acetyltransferase KAT7 yes yes 2 0.0023604 61.765 1 1 1.0494 0.94513 9.6701 2 Median 0.8492 0.88266 NaN 1 0 Median 1.2968 1.012 NaN 1 0 Median 17080000 8027800 9052400 14869000 7202400 7666500 2211200 825370 1385900 12390 1422 12734 32643;32644 50857;50858;50859 50858 3 SQSAAVTPSSTTSSTR SSSSSSGALSLRSSRSQSAAVTPSSTTSST QSAAVTPSSTTSSTRATPAPSAPAAASATS R S Q T R A 2 1 0 0 0 1 0 0 0 0 0 0 0 0 1 6 4 0 0 1 0 0 16 0 1566.7485 Q68E00;Q16186;A0A087WX59 Q68E00 188 203 DKFZp686G2045;ADRM1 Proteasomal ubiquitin receptor ADRM1 yes no 2 0.048186 35.006 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 881330 0 881330 881330 0 881330 0 0 0 12391 1768 12735 32645 50860 50860 1 SQSAFDLK SLEDALAEAQRVNTKSQSAFDLKKKNLACE AQRVNTKSQSAFDLKKKNLACEESKRKELE K S Q L K K 1 0 0 1 0 1 0 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 8 0 894.4447 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;Q7Z2X1 A0A024R158 313 320 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 1;2 0.0021589 113.71 2 2 1.2173 1.2177 33.409 4 Median 0.75933 0.86831 18.443 2 0 Median 1.7721 1.5027 0.36324 2 0 Median 612180000 298640000 313540000 493400000 255170000 238220000 118780000 43464000 75319000 12392 69 12736 32646;32647;32648;32649 50861;50862;50863;50864 50862 4 SQSAFDLKK SLEDALAEAQRVNTKSQSAFDLKKKNLACE QRVNTKSQSAFDLKKKNLACEESKRKELEK K S Q K K K 1 0 0 1 0 1 0 0 0 0 1 2 0 1 0 2 0 0 0 0 0 0 9 1 1022.5397 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;Q7Z2X1 A0A024R158 313 321 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0087367 67.897 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5460300 0 5460300 0 0 0 5460300 0 5460300 12393 69 12737 32650 50865 50865 1 SQSDLTSTTNNPAFQQR EPNGSSLKNIEKYLRSQSDLTSTTNNPAFQ SDLTSTTNNPAFQQRLRLGAKRAVNNGRLL R S Q Q R L 1 1 2 1 0 3 0 0 0 0 1 0 0 1 1 3 3 0 0 0 0 0 17 0 1893.8817 A7E2B6;B2RWN8;Q8WYB5 A7E2B6 135 151 MYST4;KAT6B Histone acetyltransferase;Histone acetyltransferase KAT6B yes no 2 0.0033242 53.034 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3179100 3179100 0 3179100 3179100 0 0 0 0 12394 694 12738 32651 50866 50866 1 SQSEPSEQDGVLDLSTK LMADQDSPLDLTVRKSQSEPSEQDGVLDLS SEPSEQDGVLDLSTKKSPCAGSTSLSHSPG K S Q T K K 0 0 0 2 0 2 2 1 0 0 2 1 0 0 1 4 1 0 0 1 0 0 17 0 1818.8483 A0A1B0GUH9;A2VCT1;Q96JN0 A0A1B0GUH9 44 60 LCOR Ligand-dependent corepressor yes no 2 1.2817E-26 138.42 2 1.6948 1.6947 NaN 1 Median 1.6948 1.6947 NaN 1 0 Median NaN NaN NaN 0 0 Median 21423000 5811500 15611000 21423000 5811500 15611000 0 0 0 12395 630 12739 32652;32653 50867;50868;50869;50870 50867 4 SQSIDTPGVISR PQVYNDFLDIMKEFKSQSIDTPGVISRVSQ EFKSQSIDTPGVISRVSQLFKGHPDLIMGF K S Q S R V 0 1 0 1 0 1 0 1 0 2 0 0 0 0 1 3 1 0 0 1 0 0 12 0 1258.6517 Q96ST3;H3BP90 Q96ST3 156 167 SIN3A Paired amphipathic helix protein Sin3a yes no 2 0.017123 41.704 1 0.62215 0.62119 NaN 1 Median 0.62215 0.62119 NaN 1 0 Median NaN NaN NaN 0 0 Median 16620000 8919800 7700200 16620000 8919800 7700200 0 0 0 12396 1990 12740 32654 50871 50871 1 SQSLLTFSTK AYQWLNRSQFYFLTKSQSLLTFSTKSPEEK YFLTKSQSLLTFSTKSPEEKLTPTSKQLLA K S Q T K S 0 0 0 0 0 1 0 0 0 0 2 1 0 1 0 3 2 0 0 0 0 0 10 0 1110.5921 A8K330;Q8IWA0 A8K330 662 671 WDR75 WD repeat-containing protein 75 yes no 2 0.00032108 90.108 4 2 1.1829 0.96169 7.4337 3 Median 0.83414 0.84955 NaN 1 0 Median 1.1938 0.96605 0.64061 2 0 Median 87982000 48418000 39563000 69691000 39748000 29942000 18291000 8669900 9621200 12397 716 12741 32655;32656;32657;32658;32659;32660 50872;50873;50874;50875;50876;50877;50878;50879 50873 8 SQSLPGADSLLAK RFRTATGAISAVFGRSQSLPGADSLLAKPI GRSQSLPGADSLLAKPIDKQHTDTVVNFLI R S Q A K P 2 0 0 1 0 1 0 1 0 0 3 1 0 0 1 3 0 0 0 0 0 0 13 0 1285.6878 F2Z2U4;Q59FH1;H0Y4W2;Q9Y4A5 F2Z2U4 2056 2068 TRRAP Transformation/transcription domain-associated protein yes no 2 0.039559 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5119300 5119300 0 5119300 5119300 0 0 0 0 12398 1253 12742 32661 50880 50880 1 SQSQLLNTLTK ______________________________ RGSRSQSQLLNTLTKKQKKHLRDFGEEHPF R S Q T K K 0 0 1 0 0 2 0 0 0 0 3 1 0 0 0 2 2 0 0 0 0 0 11 0 1231.6772 A8K0P8;Q68CQ4 A8K0P8 8 18 DIEXF Digestive organ expansion factor homolog yes no 2 0.032358 37.696 1 0.70767 0.55834 NaN 1 Median NaN NaN NaN 0 0 Median 0.70767 0.55834 NaN 1 0 Median 5417400 2904200 2513200 0 0 0 5417400 2904200 2513200 12399 699 12743 32662 50881 50881 1 SQSSDLLER WGWEVAGAPALRLQKSQSSDLLERERESVL ALRLQKSQSSDLLERERESVLRREQEVAEE K S Q E R E 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 3 0 0 0 0 0 0 9 0 1033.504 Q8IVT2 Q8IVT2 541 549 MISP Mitotic interactor and substrate of PLK1 yes yes 2 0.014831 58.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12400 1892 12744 32663 50882 50882 1 SQSSIVPEEEQAANK RQEEREKEAAEQAERSQSSIVPEEEQAANK SQSSIVPEEEQAANKGEEKKDDENIPMETE R S Q N K G 2 0 1 0 0 2 3 0 0 1 0 1 0 0 1 3 0 0 0 1 0 0 15 0 1615.7689 B4DGM3;A0A024R1S7;Q969G3;K7EMQ8;H7C048 B4DGM3 296 310 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 5.2091E-15 125.82 2 0.72535 0.73414 NaN 1 Median 0.72535 0.73414 NaN 1 0 Median NaN NaN NaN 0 0 Median 27799000 10262000 17537000 27799000 10262000 17537000 0 0 0 12401 86 12745 32664;32665 50883;50884;50885 50884 3 SQSSIVPEEEQAANKGEEK RQEEREKEAAEQAERSQSSIVPEEEQAANK IVPEEEQAANKGEEKKDDENIPMETEETHL R S Q E K K 2 0 1 0 0 2 5 1 0 1 0 2 0 0 1 3 0 0 0 1 0 0 19 1 2058.9706 B4DGM3;A0A024R1S7;Q969G3;K7EMQ8;H7C048 B4DGM3 296 314 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 3 6.7618E-06 67.866 2 2 1.0424 1.0274 2.0291 4 Median 0.90159 1.0374 2.2914 2 0 Median 1.1896 1.0194 2.0099 2 0 Median 38185000 18195000 19990000 27143000 13107000 14036000 11042000 5087900 5954100 12402 86 12746 32666;32667;32668;32669 50886;50887;50888;50889;50890;50891 50887 6 SQTELPDEK AVCIADPLPTPSQEKSQTELPDEKIGKKRK TPSQEKSQTELPDEKIGKKRKRKDDGENAK K S Q E K I 0 0 0 1 0 1 2 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 9 0 1045.4928 Q96F88;Q99575 Q96F88 371 379 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.0018185 80.455 1 0.36022 0.35614 NaN 1 Median 0.36022 0.35614 NaN 1 0 Median NaN NaN NaN 0 0 Median 8370600 6410800 1959800 8370600 6410800 1959800 0 0 0 12403 1965 12747 32670 50892 50892 1 SQVAELNDDDKDDEIVFK GPTPVCTPTFLERRKSQVAELNDDDKDDEI AELNDDDKDDEIVFKQPISCVKEEIQETQT K S Q F K Q 1 0 1 5 0 1 2 0 0 1 1 2 0 1 0 1 0 0 0 2 0 0 18 1 2078.9644 Q9BYG3;C9J808;H7BZL0 Q9BYG3 247 264 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2;3 1.3489E-39 144.5 4 4 1.1623 1.2166 8.1551 8 Median 1.0637 1.2428 4.6921 4 0 Median 1.3734 1.1674 7.7837 4 0 Median 789320000 370430000 418890000 628220000 302570000 325650000 161100000 67858000 93244000 12404 2019 12748 32671;32672;32673;32674;32675;32676;32677;32678 50893;50894;50895;50896;50897;50898;50899;50900;50901;50902;50903;50904 50894 12 SQVEEELFSVR LQRLKAEATEAARQRSQVEEELFSVRVQME ARQRSQVEEELFSVRVQMEELSKLKARIEA R S Q V R V 0 1 0 0 0 1 3 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 11 0 1321.6514 Q15149 Q15149 2361 2371 PLEC Plectin yes yes 2 0.0016351 81.865 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37807000 0 37807000 37807000 0 37807000 0 0 0 12405 1754 12749 32679;32680;32681;32682 50905;50906;50907;50908 50906 4 SQVEQQQLITVEK EGKEMCVLRMTRARRSQVEQQQLITVEKAL RRSQVEQQQLITVEKALAILSQPTPSLVVD R S Q E K A 0 0 0 0 0 4 2 0 0 1 1 1 0 0 0 1 1 0 0 2 0 0 13 0 1528.8097 A0A024R9G7;Q6PL18;A0A0B4J211 A0A024R9G7 1302 1314 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 0.00013338 89.805 2 1 0.97583 0.99903 1.4316 3 Plateau 0.97009 0.99544 0.50971 2 0 Median 1.199 0.97183 NaN 1 0 Median 18912000 9239900 9671900 16176000 7736600 8439600 2735700 1503300 1232400 12406 278 12750 32683;32684;32685 50909;50910;50911;50912;50913 50911 5 SQVFSTAADGQTQVEIK FTKLINRNTTIPTKKSQVFSTAADGQTQVE VFSTAADGQTQVEIKVCQGEREMAGDNKLL K S Q I K V 2 0 0 1 0 3 1 1 0 1 0 1 0 1 0 2 2 0 0 2 0 0 17 0 1807.8952 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;A1XP52 B7Z4V2 455 471 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 4.2395E-25 141.46 3 2 1.8948 1.8001 47.954 4 Median 2.4079 2.6995 0.037945 2 0 Median 1.4849 1.177 2.8252 2 0 Median 194210000 59560000 134650000 163290000 47695000 115590000 30929000 11865000 19064000 12407 1092 12751 32686;32687;32688;32689;32690 50914;50915;50916;50917;50918;50919;50920;50921 50916 8 SQVLFHQLVPLQVK ______________________________ MSQVLFHQLVPLQVKCKDCEERRVSIRMSI M S Q V K C 0 0 0 0 0 3 0 0 1 0 3 1 0 1 1 1 0 0 0 3 0 0 14 0 1634.9508 Q6UVJ0 Q6UVJ0 2 15 SASS6 Spindle assembly abnormal protein 6 homolog yes yes 2 0.00028433 73.632 2 2.5138 2.5932 NaN 1 Median 2.5138 2.5932 NaN 1 0 Median NaN NaN NaN 0 0 Median 6856300 1433000 5423300 6856300 1433000 5423300 0 0 0 12408 1862 12752 32691;32692 50922;50923 50922 2 SQVMDEATALQLR FRGLRKQITMEELVRSQVMDEATALQLREG VRSQVMDEATALQLREGLTSIEEVTKNLQK R S Q L R E 2 1 0 1 0 2 1 0 0 0 2 0 1 0 0 1 1 0 0 1 0 0 13 0 1460.7293 Q15149;D3DWL0;Q96IE3 Q15149 4037 4049 PLEC;PLEC1 Plectin yes no 2 0.0010917 64.918 1 1 2.1553 1.899 NaN 1 Median NaN NaN NaN 0 0 Median 2.1553 1.899 NaN 1 0 Median 9304500 7706500 1598000 6834600 6834600 0 2469900 871930 1598000 12409 1754 12753;12754 32693;32694 50924;50925;50926 50924 1619 3 SQVNGEAGSYEMTNQHVK AGEKPNKQISRVRRKSQVNGEAGSYEMTNQ NGEAGSYEMTNQHVKQNGKLEDNPSSGSPP K S Q V K Q 1 0 2 0 0 2 2 2 1 0 0 1 1 0 0 2 1 0 1 2 0 0 18 0 1977.8851 A0A024R5Q8;Q05D32;H0YMH7 A0A024R5Q8 104 121 CTDSPL2 CTD small phosphatase-like protein 2 yes no 3 1.0604E-05 60.528 1 1.0533 1.0828 NaN 1 Median 1.0533 1.0828 NaN 1 0 Median NaN NaN NaN 0 0 Median 11668000 5475400 6192400 11668000 5475400 6192400 0 0 0 12410 187 12755 32695 50927 50927 153 1 SQYEQLAEQNR AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE NNMRSQYEQLAEQNRKDAEAWFNEKSKELT R S Q N R K 1 1 1 0 0 3 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 11 0 1364.6321 CON__P13645;P13645 CON__P13645 323 333 KRT10 Keratin, type I cytoskeletal 10 yes no 2 3.3584E-30 157.75 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 188770000 188770000 0 136220000 136220000 0 52549000 52549000 0 + 12411 1161 12756 32696;32697;32698;32699 50928;50929;50930;50931 50929 4 SQYEQLAEQNRK AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE NMRSQYEQLAEQNRKDAEAWFNEKSKELTT R S Q R K D 1 1 1 0 0 3 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 12 1 1492.727 CON__P13645;P13645 CON__P13645 323 334 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 5.4003E-185 276.21 3 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1261400000 1261400000 0 945360000 945360000 0 316080000 316080000 0 + 12412 1161 12757 32700;32701;32702;32703;32704;32705;32706 50932;50933;50934;50935;50936;50937;50938 50933 7 SRAEAALEEESR AYHNSPAYLAYINAKSRAEAALEEESRQRQ NAKSRAEAALEEESRQRQSRMEKGEPYMSI K S R S R Q 3 2 0 0 0 0 4 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 12 1 1346.6426 B4DGM3;A0A024R1S7;Q969G3;J3QKS7;J3KT85;J3QR61;C0IMW8 B4DGM3 129 140 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2;3 0.00014457 102.97 3 0.98432 1.1055 25.608 3 Median 0.98432 1.1055 25.608 3 0 Median NaN NaN NaN 0 0 Median 59233000 29807000 29426000 59233000 29807000 29426000 0 0 0 12413 86 12758 32707;32708;32709 50939;50940;50941;50942;50943 50940 5 SRAEAESMYQIK IIAEVKAQYEDIANRSRAEAESMYQIKYEE ANRSRAEAESMYQIKYEELQSLAGKHGDDL R S R I K Y 2 1 0 0 0 1 2 0 0 1 0 1 1 0 0 2 0 0 1 0 0 0 12 1 1411.6766 CON__P05787;P05787;Q969I0;Q7L4M3 CON__P05787 274 285 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 6.788E-06 108.98 4 2 1.3185 1.5616 23.468 6 Median 1.3185 1.5616 10.78 4 0 Median 1.7291 1.4428 48.452 2 0 Median 333530000 154190000 179350000 325520000 151370000 174150000 8013900 2815300 5198600 + 12414 1156 12759;12760 32710;32711;32712;32713;32714;32715 50944;50945;50946;50947;50948;50949;50950;50951;50952 50948 862 9 SRDFNEECPR IVVKVLKVRDWSTRKSRDFNEECPRLRIFS WSTRKSRDFNEECPRLRIFSHPNVLPVLGA K S R P R L 0 2 1 1 1 0 2 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 10 1 1308.5517 V9HWF0;A0A0A0MTH3;Q13418 V9HWF0 232 241 HEL-S-28;ILK Integrin-linked protein kinase yes no 3 0.048838 39.179 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12415 487 12761 32716 50953 50953 1 SRDPIIFSVGWR QMRLKKHRWYKKILKSRDPIIFSVGWRRFQ ILKSRDPIIFSVGWRRFQTIPLYYIEDHNG K S R W R R 0 2 0 1 0 0 0 1 0 2 0 0 0 1 1 2 0 1 0 1 0 0 12 1 1431.7623 Q14692 Q14692 938 949 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.0039647 59.898 1 2 1.0688 0.95133 2.4669 2 Median NaN NaN NaN 0 0 Median 1.0688 0.95133 2.4669 2 0 Median 9744400 4305300 5439100 0 0 0 9744400 4305300 5439100 12416 1742 12762 32717;32718;32719 50954;50955;50956 50954 3 SRDPLLSQR EASSTEKPTKALPRKSRDPLLSQR______ KALPRKSRDPLLSQR_______________ K S R Q R - 0 2 0 1 0 1 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 9 1 1070.5833 B4DGP7;V9GYY5;A0A024R1M6;Q9UGY1;B3KQ09 B4DGP7 152 160 MGC3731;NOL12 Nucleolar protein 12 yes no 2 0.0028262 98.048 2 0.73838 0.82862 10.089 2 Median 0.73838 0.82862 10.089 2 0 Median NaN NaN NaN 0 0 Median 119370000 67222000 52149000 119370000 67222000 52149000 0 0 0 12417 80 12763 32720;32721 50957;50958;50959 50959 3 SREDAGDNDDTEGAIGVR FARMELREHGEKKKRSREDAGDNDDTEGAI DAGDNDDTEGAIGVRNKVAGGKMKKRKGR_ R S R V R N 2 2 1 4 0 0 2 3 0 1 0 0 0 0 0 1 1 0 0 1 0 0 18 1 1875.8195 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 417 434 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2;3 1.535E-05 80.522 4 1.2735 1.3813 15.259 4 Median 1.2735 1.3813 15.259 4 0 Median NaN NaN NaN 0 0 Median 140520000 60668000 79854000 140520000 60668000 79854000 0 0 0 12418 313 12764 32722;32723;32724;32725 50960;50961;50962;50963;50964;50965 50962 5 SREDEDALEQAR HAEKEKERLRQERMRSREDEDALEQARRAH RMRSREDEDALEQARRAHEEARRRQEQQQQ R S R A R R 2 2 0 2 0 1 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 12 1 1417.6433 O60885;Q96HN0 O60885 1262 1273 BRD4 Bromodomain-containing protein 4 yes no 2 0.0047444 64.439 1 0.64278 0.63941 NaN 1 Median 0.64278 0.63941 NaN 1 0 Median NaN NaN NaN 0 0 Median 7890100 4853400 3036600 7890100 4853400 3036600 0 0 0 12419 1399 12765 32726 50966 50966 1 SREIFLSQPILLELEAPLK NVQLTENEIRGLCLKSREIFLSQPILLELE FLSQPILLELEAPLKICGDIHGQYYDLLRL K S R L K I 1 1 0 0 0 1 3 0 0 2 5 1 0 1 2 2 0 0 0 0 0 0 19 1 2195.2566 P62136;A0A140VJS9;B3KXM2;E9PMD7;F5H1L6;F5H037;F8WE71;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 P62136 42 60 PPP1CA;PPP1CB;PPP1CC;HEL-S-80p Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2;3 7.9032E-40 151.87 3 1 1.4706 1.753 24.759 4 Median 1.4088 1.6657 25.132 3 0 Median 2.3533 2.0064 NaN 1 0 Median 304770000 118480000 186280000 250010000 101850000 148160000 54760000 16633000 38126000 12420 1632;343;1633 12766 32727;32728;32729;32730 50967;50968;50969;50970;50971;50972 50968 6 SRENPEEDEDQRNPAK MVGEEKMSLRNRLSKSRENPEEDEDQRNPA RENPEEDEDQRNPAKESLETPSNGRIDIKQ K S R A K E 1 2 2 2 0 1 4 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 16 2 1912.8511 B1APM4;P35610 B1APM4 16 31 SOAT1 Sterol O-acyltransferase 1 yes no 3 0.00031634 53.995 1 1.4013 1.5328 NaN 1 Median 1.4013 1.5328 NaN 1 0 Median NaN NaN NaN 0 0 Median 4074900 1699700 2375200 4074900 1699700 2375200 0 0 0 12421 820 12767 32731 50973 50973 1 SREQSSEAAETGVSENEENPVR NINVNSELNPSTGNRSREQSSEAAETGVSE AAETGVSENEENPVRIISVTPVKNIDPVKN R S R V R I 2 2 2 0 0 1 6 1 0 0 0 0 0 0 1 4 1 0 0 2 0 0 22 1 2404.0739 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1182 1203 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 3 9.2973E-08 60.133 1 1 0.6212 0.56641 NaN 1 Median NaN NaN NaN 0 0 Median 0.6212 0.56641 NaN 1 0 Median 7074800 1324100 5750800 4776500 0 4776500 2298300 1324100 974240 12422 1270 12768 32732;32733 50974;50975 50975 2 SRFWYFVSQLK LYRMRIFAPNHVVAKSRFWYFVSQLKKMKK VVAKSRFWYFVSQLKKMKKSSGEIVYCGQV K S R L K K 0 1 0 0 0 1 0 0 0 0 1 1 0 2 0 2 0 1 1 1 0 0 11 1 1459.7612 M0R117;B4DM74;Q02543;M0R3D6;M0R1A7;B4DM94;B4DUV3;B2R4C0;Q53HD3;Q32XH3 M0R117 42 52 RPL18A 60S ribosomal protein L18a yes no 3 0.010689 35.006 1 2 0.84558 0.9365 13.132 3 Plateau 0.84558 0.9365 NaN 1 0 Median 0.87416 0.77191 9.7914 2 0 Median 11954000 6827000 5126900 8245500 4836400 3409100 3708400 1990600 1717800 12423 1003 12769 32734;32735;32736 50976;50977;50978 50976 3 SRGGGEGNVDETGNNPSVSLK GSDNDVEVIKVWNSRSRGGGEGNVDETGNN GNVDETGNNPSVSLKLEESKATSSSNPSSP R S R L K L 0 1 3 1 0 0 2 5 0 0 1 1 0 0 1 3 1 0 0 2 0 0 21 1 2072.9723 A4LAA3;P46100;B4DHH8;B4DLE1;A0A096LNX6 A4LAA3 1962 1982 ATRX Transcriptional regulator ATRX yes no 3 0.018662 21.172 1 1.2268 1.0586 NaN 1 Median NaN NaN NaN 0 0 Median 1.2268 1.0586 NaN 1 0 Median 2062100 838310 1223800 0 0 0 2062100 838310 1223800 12424 672 12770 32737 50979 50979 1 SRLDQELK VCRKTYVTPRRPFEKSRLDQELKLIGEYGL PRRPFEKSRLDQELKLIGEYGLRNKREVWR K S R L K L 0 1 0 1 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 1 987.53491 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;F2Z3C0;A8MXK4 A0A024R4M0 23 30 RPS9 40S ribosomal protein S9 yes no 2 7.0038E-05 144.9 2 1 0.7877 0.87205 30.072 3 Median 0.85636 1.0344 24.146 2 0 Median 0.7877 0.67372 NaN 1 0 Median 1991800000 1110500000 881300000 1886000000 1048500000 837530000 105780000 62014000 43771000 12425 157 12771 32738;32739;32740 50980;50981;50982 50980 3 SRLEVAEAEEEETSIK IDKSRKLPHSKAKTRSRLEVAEAEEEETSI RLEVAEAEEEETSIKAARSELLLAEEPGFL R S R I K A 2 1 0 0 0 0 6 0 0 1 1 1 0 0 0 2 1 0 0 1 0 0 16 1 1818.8847 B0UZZ8;O15213;B4DNI0;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 130 145 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2;3 2.9058E-11 106.52 4 2 1.0213 1.0172 20.552 4 Median 0.72408 0.83058 29.04 2 0 Median 1.1934 1.0203 0.80503 2 0 Median 92223000 40613000 51610000 67353000 31236000 36117000 24870000 9376900 15493000 12426 809 12772 32741;32742;32743;32744;32745;32746 50983;50984;50985;50986;50987;50988;50989;50990 50986 8 SRPAPSPESIK GLARVADNAQQQYVRSRPAPSPESIKRAKE QYVRSRPAPSPESIKRAKEMDLVGLGLHPL R S R I K R 1 1 0 0 0 0 1 0 0 1 0 1 0 0 3 3 0 0 0 0 0 0 11 1 1167.6248 Q8TDD1 Q8TDD1 522 532 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 2.111E-09 131.82 2 2 1.0519 1.0607 10.179 4 Median 0.84614 1.0075 3.3077 2 0 Median 1.3624 1.1655 9.3631 2 0 Median 220330000 115560000 104770000 194200000 105280000 88920000 26133000 10286000 15847000 12427 1933 12773 32747;32748;32749;32750 50991;50992;50993;50994;50995;50996;50997 50992 7 SRPETGRPRPK YLHLPPEIVPATLRRSRPETGRPRPKGLEG TLRRSRPETGRPRPKGLEGERPARLTRGEA R S R P K G 0 3 0 0 0 0 1 1 0 0 0 1 0 0 3 1 1 0 0 0 0 0 11 3 1279.7109 P46783;Q59GE4;F6U211;S4R435;Q9NQ39 P46783 97 107 RPS10;RPS10-NUDT3;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 3 0.052713 14.876 1 1.1196 1.223 NaN 1 Median 1.1196 1.223 NaN 1 0 Median NaN NaN NaN 0 0 Median 3740600 1709000 2031600 3740600 1709000 2031600 0 0 0 12428 1573 12774 32751 50998 50998 0 SRPFTVAASFQSTSVK LDLKKLRRSSSLKERSRPFTVAASFQSTSV RPFTVAASFQSTSVKSPKTVSPPIRKGWSM R S R V K S 2 1 0 0 0 1 0 0 0 0 0 1 0 2 1 4 2 0 0 2 0 0 16 1 1711.8893 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 427 442 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 3.2572E-06 82.747 2 2 5.1478 4.3963 4.9378 2 Median NaN NaN NaN 0 0 Median 5.1478 4.3963 4.9378 2 0 Median 68526000 3993000 64533000 45260000 0 45260000 23266000 3993000 19273000 12429 1010 12775 32752;32753;32754;32755 50999;51000;51001;51002;51003 50999 5 SRPQGLTEAEQR MMGTMIQKLQRQRLRSRPQGLTEAEQRELE RLRSRPQGLTEAEQRELEQEAKELKKVMDL R S R Q R E 1 2 0 0 0 2 2 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 12 1 1370.6902 Q00653;A0A1P8C958;D3DR86 Q00653 161 172 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2 0.016615 58.37 1 2.6771 2.6979 NaN 1 Median 2.6771 2.6979 NaN 1 0 Median NaN NaN NaN 0 0 Median 10125000 2217900 7907300 10125000 2217900 7907300 0 0 0 12430 1674 12776 32756 51004 51004 1 SRPTSEGSDIESTEPQK ENMDTSNTSISKMKRSRPTSEGSDIESTEP PTSEGSDIESTEPQKQCSKKKKKRDRVEAS R S R Q K Q 0 1 0 1 0 1 3 1 0 1 0 1 0 0 2 4 2 0 0 0 0 0 17 1 1846.8545 Q4G0J3;D6RFF0;H0YA82 Q4G0J3 254 270 LARP7 La-related protein 7 yes no 3 0.0098121 31.233 1 2 0.69322 0.78294 24.469 3 Plateau 0.69322 0.78294 NaN 1 0 Median 0.59635 0.52531 11.651 2 0 Median 8403900 4598400 3805400 5870100 3076500 2793500 2533800 1521900 1011900 12431 1779 12777 32757;32758;32759 51005;51006;51007 51006 2 SSAAEPPPPPPPESAPSK ______________________________ AEPPPPPPPESAPSKPAASIASGGSNSSNK M S S S K P 3 0 0 0 0 0 2 0 0 0 0 1 0 0 8 4 0 0 0 0 0 0 18 0 1741.8523 O60264;Q4W5G3 O60264 2 19 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.5545E-05 80.522 2 2.5602 2.7764 4.1422 2 Median 2.5602 2.7764 4.1422 2 0 Median NaN NaN NaN 0 0 Median 80984000 22881000 58103000 80984000 22881000 58103000 0 0 0 12432 1391 12778 32760;32761 51008;51009;51010 51008 3 SSADTEFSDECTTAER ELPLASSWRSNNSRKSSADTEFSDECTTAE SADTEFSDECTTAERVLMKSPSPALHPPQK K S S E R V 2 1 0 2 1 0 3 0 0 0 0 0 0 1 0 3 3 0 0 0 0 0 16 0 1804.7058 Q6ZMY0;Q9H6S0 Q6ZMY0 1111 1126 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 2 2.4905E-12 117.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12433 1863 12779 32762 51011 51011 1 SSAQDPQAVLGALGR IPAACGATLPALGLRSSAQDPQAVLGALGR SSAQDPQAVLGALGRALSPLEEWLRLHTYL R S S G R A 3 1 0 1 0 2 0 2 0 0 2 0 0 0 1 2 0 0 0 1 0 0 15 0 1468.7634 A0A024RCN6;P26640;A0A140T936;A0A140T954;A2ABF4;A0A0G2JJT9;A0A140T904 A0A024RCN6 123 137 VARS Valine--tRNA ligase yes no 2 0.00055248 65.842 2 2 1.5668 1.3098 27.339 2 Median NaN NaN NaN 0 0 Median 1.5668 1.3098 27.339 2 0 Median 43349000 34566000 8783100 27661000 27661000 0 15688000 6905300 8783100 12434 363 12780 32763;32764;32765;32766 51012;51013;51014;51015 51015 4 SSAVDPEPQVK KSRKTPQKSRNRKNRSSAVDPEPQVKLEDV RKNRSSAVDPEPQVKLEDVLPLAFTRLCEP R S S V K L 1 0 0 1 0 1 1 0 0 0 0 1 0 0 2 2 0 0 0 2 0 0 11 0 1155.5772 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 248 258 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 1.3948E-23 155.84 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106970000 0 106970000 106970000 0 106970000 0 0 0 12435 1817 12781 32767 51016 51016 1 SSAVQQLLEK ITFVRKNKTLSAAFKSSAVQQLLEKNYRIH SAAFKSSAVQQLLEKNYRIHCSVHNIIIPE K S S E K N 1 0 0 0 0 2 1 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1101.603 A8K9K8;Q9UNQ2;A0A0C4DGB1 A8K9K8 244 253 DIMT1 Probable dimethyladenosine transferase yes no 2 4.9482E-06 109.02 2 2 1.0132 0.94578 18.003 4 Median 0.75818 0.7865 11.881 2 0 Median 1.3049 1.0493 0.48621 2 0 Median 53400000 27453000 25947000 41596000 22442000 19154000 11804000 5010600 6793100 12436 786 12782 32768;32769;32770;32771 51017;51018;51019;51020;51021;51022;51023 51021 7 SSAVVELDLEGTR KKLTTDGKLIARALRSSAVVELDLEGTRIR LRSSAVVELDLEGTRIRRKKPLGERPKDED R S S T R I 1 1 0 1 0 0 2 1 0 0 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1374.6991 Q4G0J3;D6RFF0;D6RF49;D6RAF3 Q4G0J3 96 108 LARP7 La-related protein 7 yes no 2 0.0011363 76.655 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12437 1779 12783 32772 51024 51024 1 SSAVVVDAIPVFLEK HACRALTYMMEALPRSSAVVVDAIPVFLEK SSAVVVDAIPVFLEKLQVIQCIDVAEQALT R S S E K L 2 0 0 1 0 0 1 0 0 1 1 1 0 1 1 2 0 0 0 4 0 0 15 0 1572.8763 Q14669 Q14669 515 529 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.0068435 36.303 1 2.1047 2.2544 NaN 1 Median 2.1047 2.2544 NaN 1 0 Median NaN NaN NaN 0 0 Median 3583100 1049800 2533300 3583100 1049800 2533300 0 0 0 12438 1736 12784 32773 51025 51025 1 SSCPLANSQYATIK SFCRNEYSLTGLCNRSSCPLANSQYATIKE RSSCPLANSQYATIKEEKGQCYLYMKVIER R S S I K E 2 0 1 0 1 1 0 0 0 1 1 1 0 0 1 3 1 0 1 0 0 0 14 0 1538.7399 Q9BXY0;H0YBV6;A0PJ56 Q9BXY0 42 55 MAK16 Protein MAK16 homolog yes no 2 1.5063E-29 153.95 2 2 0.99918 0.94202 3.9357 4 Median 0.8255 0.91669 1.7117 2 0 Median 1.2215 0.97406 2.5876 2 0 Median 149190000 75728000 73462000 123760000 65228000 58528000 25435000 10501000 14935000 12439 2016 12785 32774;32775;32776;32777 51026;51027;51028;51029;51030;51031;51032;51033 51029 8 SSDAFTTQHALR VEQEAQVETSPETSRSSDAFTTQHALRQAQ TSRSSDAFTTQHALRQAQMSKELVELNKAL R S S L R Q 2 1 0 1 0 1 0 0 1 0 1 0 0 1 0 2 2 0 0 0 0 0 12 0 1332.6422 Q59HG1;O95239;Q6PKB2 Q59HG1 510 521 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 1.2373E-23 162.36 3 4 1.4521 1.2168 12.29 7 Median 0.90977 1.0552 7.8032 3 0 Plateau 1.5087 1.2295 2.9359 4 0 Median 204960000 98411000 106550000 155900000 79515000 76383000 49061000 18896000 30165000 12440 1803 12786 32778;32779;32780;32781;32782;32783;32784 51034;51035;51036;51037;51038;51039;51040;51041;51042;51043;51044 51035 10 SSDESNFDVPPR KGKKRNPWSDSESDRSSDESNFDVPPRETE SDRSSDESNFDVPPRETEPRRAATKTKFTM R S S P R E 0 1 1 2 0 0 1 0 0 0 0 0 0 1 2 3 0 0 0 1 0 0 12 0 1348.5895 P11388 P11388 1302 1313 TOP2A DNA topoisomerase 2-alpha yes yes 2 5.4566E-18 144.77 5 2 1.0095 0.99809 13.36 5 Median 1.033 1.0757 4.6223 3 0 Median 0.98878 0.83326 4.0477 2 0 Median 93390000 52829000 40562000 86642000 49524000 37118000 6748400 3304600 3443800 12441 1471 12787 32785;32786;32787;32788;32789;32790;32791 51045;51046;51047;51048;51049;51050;51051;51052;51053;51054;51055 51046 10 SSDQPLTVPVSPK HKANPIRKYQGLEIKSSDQPLTVPVSPKFS IKSSDQPLTVPVSPKFSTRFHC________ K S S P K F 0 0 0 1 0 1 0 0 0 0 1 1 0 0 3 3 1 0 0 2 0 0 13 0 1353.714 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 728 740 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.00013042 90.05 2 2 1.082 1.0232 6.5159 4 Median 0.87031 0.9656 1.8198 2 0 Median 1.3428 1.0788 1.1025 2 0 Median 196960000 99501000 97454000 153040000 80572000 72466000 43918000 18929000 24988000 12442 1837 12788 32792;32793;32794;32795 51056;51057;51058;51059;51060;51061;51062 51058 7 SSEAVIWEVLR LLMVLLSIIFMNGNRSSEAVIWEVLRKLGL NGNRSSEAVIWEVLRKLGLRPGIHHSLFGD R S S L R K 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 1 0 2 0 0 11 0 1287.6823 Q5H909;A0A024R9Y7;Q9UNF1;Q5H907;B4DX55;B4DWM5 Q5H909 368 378 MAGED2 Melanoma-associated antigen D2 yes no 2 1.6171E-05 91.867 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1878400 1878400 0 1878400 1878400 0 0 0 0 12443 292 12789 32796;32797 51063;51064 51064 2 SSEEIESAFR EYMAFMISRETENVKSSEEIESAFRALSSE TENVKSSEEIESAFRALSSEGKPYVTKEEL K S S F R A 1 1 0 0 0 0 3 0 0 1 0 0 0 1 0 3 0 0 0 0 0 0 10 0 1153.5251 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;A0A0D9SFH4 A0A0D9SF54 2390 2399 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 3.7597E-08 118.33 2 1.3955 1.4163 11.106 2 Median 1.3955 1.4163 11.106 2 0 Median NaN NaN NaN 0 0 Median 38326000 17654000 20672000 38326000 17654000 20672000 0 0 0 12444 523 12790 32798;32799 51065;51066;51067 51065 3 SSEGSAHNVAYPGIPK SSSLKGEKTKVLSSKSSEGSAHNVAYPGIP SEGSAHNVAYPGIPKLAPQVHNTTSRELNV K S S P K L 2 0 1 0 0 0 1 2 1 1 0 1 0 0 2 3 0 0 1 1 0 0 16 0 1612.7845 Q03164 Q03164 2315 2330 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2;3 0.023864 35.204 2 1 0.90096 0.91414 32.46 3 Median 0.80425 0.80991 17.121 2 0 Median 1.6212 1.3645 NaN 1 0 Median 25955000 13633000 12322000 24374000 13079000 11295000 1580800 553840 1027000 12445 1680 12791 32800;32801;32802 51068;51069;51070 51069 3 SSELQAIK RSTAVTTSSAKIKLKSSELQAIKTELTQIK SAKIKLKSSELQAIKTELTQIKSNIDALLS K S S I K T 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 8 0 874.476 A8K4T9;Q53GL6;Q5QPL9;Q9UKM9;Q5QPM0 A8K4T9 168 175 RALY RNA-binding protein Raly yes no 2 0.023819 56.27 2 0.63579 0.51162 5.7606 2 Median NaN NaN NaN 0 0 Median 0.63579 0.51162 5.7606 2 0 Median 10620000 6222000 4398100 0 0 0 10620000 6222000 4398100 12446 741 12792 32803;32804 51071;51072 51071 2 SSENILTVHEQANVESLK PNFYNNDFDDDFSHRSSENILTVHEQANVE NILTVHEQANVESLKETKQNCKDLDEDANG R S S L K E 1 0 2 0 0 1 3 0 1 1 2 1 0 0 0 3 1 0 0 2 0 0 18 0 1997.0065 Q5QJE6;J3KP30;B7Z854 Q5QJE6 273 290 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2;3 3.2257E-30 137.39 4 3 1.0377 1.2029 14.898 7 Median 0.98355 1.1873 12.836 4 0 Linear 1.5862 1.3233 3.6788 3 0 Median 532460000 246370000 286090000 418450000 205020000 213430000 114010000 41348000 72664000 12447 1813 12793 32805;32806;32807;32808;32809;32810;32811 51073;51074;51075;51076;51077;51078;51079;51080;51081;51082;51083;51084;51085;51086 51080 14 SSENNSLNPEVMR VRKQDGFTHILLSTKSSENNSLNPEVMREV TKSSENNSLNPEVMREVQSALSTAAADDSK K S S M R E 0 1 3 0 0 0 2 0 0 0 1 0 1 0 1 3 0 0 0 1 0 0 13 0 1475.6675 Q9Y232;C9JQG7 Q9Y232 361 373 CDYL Chromodomain Y-like protein yes no 2 6.7035E-05 81.525 2 1.462 1.4841 3.8379 2 Median 1.462 1.4841 3.8379 2 0 Median NaN NaN NaN 0 0 Median 28600000 12110000 16490000 28600000 12110000 16490000 0 0 0 12448 2121 12794 32812;32813 51087;51088;51089;51090 51088 1950 4 SSENPNEVFR EFFLHLINMVERNCRSSENPNEVFRFLVEE ERNCRSSENPNEVFRFLVEEKIKCLATEKV R S S F R F 0 1 2 0 0 0 2 0 0 0 0 0 0 1 1 2 0 0 0 1 0 0 10 0 1177.5364 A0A140VJZ1;P45974 A0A140VJZ1 453 462 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 2.817E-08 116.05 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40051000 0 40051000 40051000 0 40051000 0 0 0 12449 613 12795 32814;32815 51091;51092;51093 51093 3 SSEPVVIMK PASKKQRVAPRARGKSSEPVVIMKRSLRTS PRARGKSSEPVVIMKRSLRTSAKRIEPAEE K S S M K R 0 0 0 0 0 0 1 0 0 1 0 1 1 0 1 2 0 0 0 2 0 0 9 0 988.52632 P46013 P46013 3041 3049 MKI67 Antigen KI-67 yes yes 2 0.00017909 100.45 2 4 2.363 2.5759 23.512 6 Median 2.363 2.6947 1.7935 2 0 Median 2.5796 2.074 24.95 4 0 Median 343540000 105920000 237620000 302680000 94512000 208170000 40863000 11406000 29457000 12450 1569 12796;12797 32816;32817;32818;32819;32820;32821 51094;51095;51096;51097;51098;51099;51100;51101;51102;51103;51104 51094 1344 11 SSEPVVTMSVEYQMK SFAAAPVPTTTLVLKSSEPVVTMSVEYQMK SSEPVVTMSVEYQMKSVLKSVESTSPEPSK K S S M K S 0 0 0 0 0 1 2 0 0 0 0 1 2 0 1 3 1 0 1 3 0 0 15 0 1713.7954 P18583;D3DSF7;B3KRA1 P18583 259 273 SON Protein SON yes no 2 0.0033502 44.299 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5472400 0 5472400 5472400 0 5472400 0 0 0 12451 1499 12798 32822 51105 51105 1255;1256 1 SSEQILATLK ILTGGADKNVVVFDKSSEQILATLKGHTKK VVFDKSSEQILATLKGHTKKVTSVVFHPSQ K S S L K G 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 2 1 0 0 0 0 0 10 0 1088.6077 Q9UMS4 Q9UMS4 252 261 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 1.2004E-16 160.36 2 2 1.6794 1.8567 35.73 4 Linear 1.5629 1.7494 21.853 2 0 Median 1.2182 0.984 6.4454 2 0 Median 169590000 66767000 102820000 154360000 59311000 95049000 15231000 7456700 7774200 12452 2114 12799 32823;32824;32825;32826 51106;51107;51108;51109;51110;51111;51112;51113 51106 8 SSFADISNLLQIEPR FYRRAQAHKALKDYKSSFADISNLLQIEPR SSFADISNLLQIEPRNGPAQKLRQEVKQNL K S S P R N 1 1 1 1 0 1 1 0 0 2 2 0 0 1 1 3 0 0 0 0 0 0 15 0 1688.8733 Q15785;B4DXU3;Q6ZPD0 Q15785 279 293 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 1.8852E-16 129.34 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13865000 0 13865000 13865000 0 13865000 0 0 0 12453 1765 12800 32827;32828 51114;51115 51114 2 SSFANVAAATPAIK AVGKQPAPRNLVPKKSSFANVAAATPAIKK KSSFANVAAATPAIKKPPSGFKGTIPKRPW K S S I K K 5 0 1 0 0 0 0 0 0 1 0 1 0 1 1 2 1 0 0 1 0 0 14 0 1346.7194 Q9BTC0 Q9BTC0 571 584 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00013741 78.903 1 1 1.3777 1.2926 23.557 2 Median 1.0251 1.0943 NaN 1 0 Median 1.8516 1.5269 NaN 1 0 Median 44164000 22188000 21975000 32118000 17619000 14500000 12045000 4569900 7475500 12454 2002 12801 32829;32830 51116;51117;51118;51119 51117 4 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK QQQHDFTLTQTADGRSSFDWLTGSSTDPLV DHTSPSSDSLLFAHKRSERLQRAPLKSVGP R S S H K R 1 0 0 4 0 0 0 1 2 0 4 1 0 2 2 8 3 1 0 1 0 0 30 0 3233.5153 P78527 P78527 2654 2683 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 4 0.0014703 28.46 1 0.36904 0.30211 NaN 1 Median NaN NaN NaN 0 0 Median 0.36904 0.30211 NaN 1 0 Median 35304000 23999000 11305000 0 0 0 35304000 23999000 11305000 12455 1665 12802 32831 51120 51120 1 SSFLPSYIIDVR SLAEEHEGLVGEGQRSSFLPSYIIDVRALD GQRSSFLPSYIIDVRALDEKLLNIIDLQFL R S S V R A 0 1 0 1 0 0 0 0 0 2 1 0 0 1 1 3 0 0 1 1 0 0 12 0 1395.7398 D3DWL9;Q10570;B4DEF4 D3DWL9 105 116 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 2 0.0051179 51.762 1 1.3567 1.3681 NaN 1 Median 1.3567 1.3681 NaN 1 0 Median NaN NaN NaN 0 0 Median 6247900 2708200 3539700 6247900 2708200 3539700 0 0 0 12456 1198 12803 32832 51121 51121 1 SSFQVQLASNPVLDAWYGAR KARMEKELLEMRPFRSSFQVQLASNPVLDA QLASNPVLDAWYGARDWALNHLDDNEVWIT R S S A R D 3 1 1 1 0 2 0 1 0 0 2 0 0 1 1 3 0 1 1 2 0 0 20 0 2208.0964 Q9H9F9 Q9H9F9 519 538 ACTR5 Actin-related protein 5 yes yes 2 1.2865E-06 75.669 1 0.93916 0.94748 NaN 1 Median 0.93916 0.94748 NaN 1 0 Median NaN NaN NaN 0 0 Median 6029400 3428100 2601300 6029400 3428100 2601300 0 0 0 12457 2045 12804 32833 51122 51122 1 SSFSITR SRDKLGAKGDFPTGKSSFSITREAQVNVRM KGDFPTGKSSFSITREAQVNVRMDSFDEDL K S S T R E 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 3 1 0 0 0 0 0 7 0 796.40792 Q9Y2W1 Q9Y2W1 559 565 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.0045621 114.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18102000 18102000 0 18102000 18102000 0 0 0 0 12458 2128 12805 32834 51123 51123 1 SSFSSDPDESEGIPLK PRKIREQEPARRVSRSSFSSDPDESEGIPL SFSSDPDESEGIPLKRRRVSFGGHLRPELF R S S L K R 0 0 0 2 0 0 2 1 0 1 1 1 0 1 2 5 0 0 0 0 0 0 16 0 1693.7683 Q70L73 Q70L73 62 77 MKI67 yes yes 2 1.4832E-12 122.34 2 2 3.7473 3.616 16.215 4 Median 2.7649 3.1047 5.2207 2 0 Median 4.9365 4.0905 1.0978 2 0 Median 316020000 84631000 231380000 234440000 70420000 164020000 81575000 14211000 67364000 12459 1864 12806 32835;32836;32837;32838 51124;51125;51126;51127;51128;51129;51130;51131;51132 51125 9 SSFYPDGGDQETAK TIAPQNAPRDESRGRSSFYPDGGDQETAKT RSSFYPDGGDQETAKTGKFLKRFTDEESRV R S S A K T 1 0 0 2 0 1 1 2 0 0 0 1 0 1 1 2 1 0 1 0 0 0 14 0 1500.6369 Q9NYF8;Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7;H0YF00 Q9NYF8 319 332 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.00010345 84.658 2 1 1.1903 1.2157 12.338 3 Median 1.1377 1.2732 6.5349 2 0 Median 1.2677 1.0444 NaN 1 0 Median 178420000 80382000 98036000 167750000 75913000 91840000 10665000 4469100 6196000 12460 2083 12807 32839;32840;32841 51133;51134;51135;51136;51137;51138;51139 51134 7 SSGAASSAPGGGDGAEYK GESRSSSRGGGGESRSSGAASSAPGGGDGA AASSAPGGGDGAEYKTLKISELGSQLSDEA R S S Y K T 4 0 0 1 0 0 1 5 0 0 0 1 0 0 1 4 0 0 1 0 0 0 18 0 1567.675 A0A087WWP4;Q96T37 A0A087WWP4 109 126 RBM15 Putative RNA-binding protein 15 yes no 2 1.5183E-06 85.845 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12461 427 12808 32842;32843 51140;51141 51140 2 SSGASVTTQPTEFK PAEVDPDTILKALFKSSGASVTTQPTEFKI KSSGASVTTQPTEFKIKL____________ K S S F K I 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 3 3 0 0 1 0 0 14 0 1438.694 Q96DI9;F6VRR5;B4E0L0;Q9BY77 Q96DI9 401 414 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 8.5112E-30 157.97 1 2 1.0458 0.77024 19.106 3 Plateau 1.0458 1.0667 NaN 1 0 Median 0.95025 0.76625 0.73434 2 0 Median 24020000 13800000 10220000 10421000 7116900 3303700 13599000 6683300 6916200 12462 1063 12809 32844;32845;32846 51142;51143;51144;51145;51146 51142 5 SSGEIVYCGQVFEK SRFWYFVSQLKKMKKSSGEIVYCGQVFEKS KSSGEIVYCGQVFEKSPLRVKNFGIWLRYD K S S E K S 0 0 0 0 1 1 2 2 0 1 0 1 0 1 0 2 0 0 1 2 0 0 14 0 1601.7396 M0R117;B4DM74;Q02543;M0R3D6;M0R1A7;B4DM94;B4DUV3;B2R4C0;Q53HD3;M0R0P7 M0R117 57 70 RPL18A 60S ribosomal protein L18a yes no 2 3.0841E-14 128.01 2 2 0.91913 0.99694 8.4649 4 Linear 0.83905 0.98966 1.083 2 0 Median 0.9987 0.85541 1.1255 2 0 Median 1024600000 542500000 482070000 843610000 453030000 390580000 180950000 89465000 91489000 12463 1003 12810 32847;32848;32849;32850 51147;51148;51149;51150;51151;51152;51153;51154 51150 8 SSGLTAVWVAR KDADSQNPDAPEGKRSSGLTAVWVARNRFA EGKRSSGLTAVWVARNRFAVLDRMHSLLIK R S S A R N 2 1 0 0 0 0 0 1 0 0 1 0 0 0 0 2 1 1 0 2 0 0 11 0 1145.6193 P53621 P53621 413 423 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.00011853 96.331 2 1.2381 1.2479 4.6752 2 Median 1.2381 1.2479 4.6752 2 0 Median NaN NaN NaN 0 0 Median 36968000 17985000 18982000 36968000 17985000 18982000 0 0 0 12464 1607 12811 32851;32852 51155;51156;51157 51157 3 SSGPTSLFAVTVAPPGAR QPQQQRGAAKEAAGKSSGPTSLFAVTVAPP PTSLFAVTVAPPGARQGQQQAGGDGKTEQK K S S A R Q 3 1 0 0 0 0 0 2 0 0 1 0 0 1 3 3 2 0 0 2 0 0 18 0 1713.905 B4DLR3;Q00839;Q96BA7;B3KX72 B4DLR3 165 182 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 1.0194E-05 107.09 2 2 1.2249 1.7722 41.979 4 Linear 1.5125 1.7716 1.1341 2 0 Median 0.9878 0.85649 1.7988 2 0 Median 763990000 307650000 456340000 622920000 234340000 388580000 141060000 73307000 67758000 12465 999 12812 32853;32854;32855;32856 51158;51159;51160;51161;51162;51163;51164;51165;51166 51161 9 SSGPYGGGGQYFAK SSNFGPMKGGNFGGRSSGPYGGGGQYFAKP RSSGPYGGGGQYFAKPRNQGGYGGSSSSSS R S S A K P 1 0 0 0 0 1 0 5 0 0 0 1 0 1 1 2 0 0 2 0 0 0 14 0 1374.6204 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q9BSM5;Q0VAC0;Q6IPF2;A0A024QZ98;Q32P51;B4DP35;H0YH80;B4E0B5;Q3MI39 F8W6I7 272 285 HNRNPA1;HNRPA1;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 0.00021134 67.726 2 2 1.8365 1.7593 54.469 4 Median 2.4407 2.8118 1.131 2 0 Median 1.3725 1.0949 1.8917 2 0 Median 435810000 132740000 303060000 402100000 118710000 283390000 33708000 14036000 19672000 12466 317 12813 32857;32858;32859;32860 51167;51168;51169;51170;51171;51172 51167 5 SSGSPYGGGYGSGGGSGGYGSR QSNYGPMKGGSFGGRSSGSPYGGGYGSGGG GGYGSGGGSGGYGSRRF_____________ R S S S R R 0 1 0 0 0 0 0 11 0 0 0 0 0 0 1 6 0 0 3 0 0 0 22 0 1909.7827 P51991;B4E3E6;B4DDB6;B4E036;Q8NFG3;H7C1J8;Q66K53 P51991 355 376 HNRNPA3;HNRPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 2 1.4333E-08 76.341 3 1 1.5328 1.6763 39.658 3 Plateau 1.5559 1.6411 3.0025 2 0 Median 0.97406 0.8265 NaN 1 0 Median 73946000 28596000 45350000 64698000 23964000 40734000 9248000 4632500 4615500 12467 1598 12814 32861;32862;32863;32864 51173;51174;51175;51176;51177;51178;51179 51178 7 SSGVPVDGFYTEEVR VGKTTLIHKASEVLKSSGVPVDGFYTEEVR SSGVPVDGFYTEEVRQGGRRIGFDVVTLSG K S S V R Q 0 1 0 1 0 0 2 2 0 0 0 0 0 1 1 2 1 0 1 3 0 0 15 0 1640.7682 Q5TDE9;Q5TDF0;Q9BSD7 Q5TDE9 28 42 C1orf57;NTPCR Cancer-related nucleoside-triphosphatase yes no 2 0.042454 38.238 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7201900 0 7201900 7201900 0 7201900 0 0 0 12468 1826 12815 32865 51180 51180 1 SSHYDELLAAEAR GLATVIRYRQDDDQRSSHYDELLAAEARAI QRSSHYDELLAAEARAIKNGKGLHSKKEVP R S S A R A 3 1 0 1 0 0 2 0 1 0 2 0 0 0 0 2 0 0 1 0 0 0 13 0 1460.6896 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8;H7C597 A0A140VK49 473 485 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2;3 4.2587E-09 120.96 4 1.3588 1.4243 24.706 4 Median 1.3588 1.4243 24.706 4 0 Median NaN NaN NaN 0 0 Median 75736000 30073000 45663000 75736000 30073000 45663000 0 0 0 12469 618 12816 32866;32867;32868;32869 51181;51182;51183;51184;51185 51184 5 SSIAGLLLK ELARREDVRHYLQGRSSIAGLLLKATNEKL HYLQGRSSIAGLLLKATNEKLSVYAALQRQ R S S L K A 1 0 0 0 0 0 0 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 9 0 900.56442 Q15149;D3DWL0 Q15149 2833 2841 PLEC;PLEC1 Plectin yes no 2 0.0028653 73.248 1 1.8199 2.0441 NaN 1 Median 1.8199 2.0441 NaN 1 0 Median NaN NaN NaN 0 0 Median 55710000 18829000 36881000 55710000 18829000 36881000 0 0 0 12470 1754 12817 32870 51186 51186 1 SSIAGSEDAEPLAPPIK EEREKILSSMGNDDKSSIAGSEDAEPLAPP IAGSEDAEPLAPPIKPIKPVTRNKAPQEPP K S S I K P 3 0 0 1 0 0 2 1 0 2 1 1 0 0 3 3 0 0 0 0 0 0 17 0 1680.857 Q03164;E9PR05;Q9HB80;H7C5W4 Q03164 1114 1130 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 3.9871E-09 105.65 2 2 1.295 1.1849 37.98 4 Median 0.83124 0.84496 3.4261 2 0 Median 2.0159 1.6298 0.68688 2 0 Median 65591000 31243000 34348000 47987000 25399000 22588000 17604000 5843800 11760000 12471 1680 12818 32871;32872;32873;32874 51187;51188;51189;51190;51191;51192;51193 51190 7 SSIINEHMGSSSR DTEVKTLKLSGMSNRSSIINEHMGSSSRDR NRSSIINEHMGSSSRDRRQKGKKSCKETFK R S S S R D 0 1 1 0 0 0 1 1 1 2 0 0 1 0 0 5 0 0 0 0 0 0 13 0 1403.6463 Q03164 Q03164 2411 2423 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.0010962 54.471 2 0.88746 0.8827 NaN 1 Median 0.88746 0.8827 NaN 1 0 Median NaN NaN NaN 0 0 Median 14842000 11035000 3807400 14842000 11035000 3807400 0 0 0 12472 1680 12819 32875;32876 51194;51195;51196 51195 1494 3 SSISETLSGTDTFSSSNNHEK EPLQVSFAVLSSPNKSSISETLSGTDTFSS LSGTDTFSSSNNHEKISSPKVGRITRTSNR K S S E K I 0 0 2 1 0 0 2 1 1 1 1 1 0 1 0 7 3 0 0 0 0 0 21 0 2226.9877 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 459 479 CDCA2 Cell division cycle-associated protein 2 yes no 3 3.1471E-07 53.625 2 1 0.82265 0.84883 30.966 3 Median 0.73016 0.74668 18.134 2 0 Median 1.5698 1.2166 NaN 1 0 Median 44753000 23466000 21287000 31197000 17840000 13356000 13556000 5625800 7930300 12473 1233 12820 32877;32878;32879 51197;51198;51199;51200 51200 4 SSLEDGCLSCGR DQSREQMASDVANNKSSLEDGCLSCGRKNP NNKSSLEDGCLSCGRKNPVSFHPLFEGGLC K S S G R K 0 1 0 1 2 0 1 2 0 0 2 0 0 0 0 3 0 0 0 0 0 0 12 0 1339.5496 Q9UBC3;B3KM53;Q59H79 Q9UBC3 429 440 DNMT3B DNA (cytosine-5)-methyltransferase 3B yes no 2 0.0039733 64.82 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3966500 0 3966500 3966500 0 3966500 0 0 0 12474 2097 12821 32880 51201 51201 1 SSLGQSASETEEDTVSVSK MNSQQEEEEMETDARSSLGQSASETEEDTV QSASETEEDTVSVSKKEKNRKRRNRKKKKK R S S S K K 1 0 0 1 0 1 3 1 0 0 1 1 0 0 0 6 2 0 0 2 0 0 19 0 1939.8858 Q13435;Q7Z3K9;E9PPJ0;E9PJ04;H0YCG1 Q13435 302 320 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 2 7.9621E-12 101.2 2 1 1.4811 1.5391 56.889 3 Plateau 1.4659 1.4946 4.1563 2 0 Median 0.71396 0.55867 NaN 1 0 Median 48210000 19926000 28284000 44987000 18071000 26916000 3222800 1854800 1368100 12475 1713 12822 32881;32882;32883 51202;51203;51204;51205;51206;51207 51202 6 SSLGSHQLPR CSSSSSSASLPSSGRSSLGSHQLPRGYISI PSSGRSSLGSHQLPRGYISIPVIHEQNVTR R S S P R G 0 1 0 0 0 1 0 1 1 0 2 0 0 0 1 3 0 0 0 0 0 0 10 0 1080.5676 C9JFK9;Q53GY1;O95817 C9JFK9 136 145 BAG3 BAG family molecular chaperone regulator 3 yes no 2 0.00069328 82.749 1 3.1511 3.2011 NaN 1 Median 3.1511 3.2011 NaN 1 0 Median NaN NaN NaN 0 0 Median 7504700 1626700 5878000 7504700 1626700 5878000 0 0 0 12476 1133 12823 32884 51208 51208 1 SSLGSLQTPEAVTTR ARRKTVFSPTLPAARSSLGSLQTPEAVTTR SSLGSLQTPEAVTTRKGTGLLSSDYRIING R S S T R K 1 1 0 0 0 1 1 1 0 0 2 0 0 0 1 3 3 0 0 1 0 0 15 0 1545.7999 Q7Z2W4;A8K9U6;C9J6P4;Q05DV5 Q7Z2W4 386 400 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 1.3699E-15 134.75 2 1 1.2177 1.1892 17.95 3 Median 1.2181 1.316 14.327 2 0 Median 1.2177 1.0181 NaN 1 0 Median 89098000 44025000 45073000 85500000 42469000 43031000 3598300 1555800 2042500 12477 1873 12824 32885;32886;32887 51209;51210;51211;51212;51213 51212 4 SSLINSLK THIRVGVVGLPNVGKSSLINSLKRSRACSV GLPNVGKSSLINSLKRSRACSVGAVPGITK K S S L K R 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 3 0 0 0 0 0 0 8 0 860.49673 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 266 273 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.054005 42.287 1 1.1659 0.94488 NaN 1 Median NaN NaN NaN 0 0 Median 1.1659 0.94488 NaN 1 0 Median 24780000 10827000 13954000 0 0 0 24780000 10827000 13954000 12478 291 12825 32888 51214 51214 1 SSLLIEQPVK GFVIQEGLEPFPVSRSSLLIEQPVKKRPLL FPVSRSSLLIEQPVKKRPLLDNQVINSVCV R S S V K K 0 0 0 0 0 1 1 0 0 1 2 1 0 0 1 2 0 0 0 1 0 0 10 0 1112.6441 A5YM43;Q8NDX5;E7EX82 A5YM43 723 732 PHC3 Polyhomeotic-like protein 3 yes no 2 0.01668 56.434 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2357100 2357100 0 0 0 0 2357100 2357100 0 12479 677 12826 32889;32890 51215;51216 51215 2 SSLLLGFR FLKSNTLPISLQSIRSSLLLGFRRSMNINL ISLQSIRSSLLLGFRRSMNINLWSEITELL R S S F R R 0 1 0 0 0 0 0 1 0 0 3 0 0 1 0 2 0 0 0 0 0 0 8 0 891.5178 E5KNY5;P42704;B4DSR0 E5KNY5 542 549 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0049823 91.906 3 2.1508 2.242 NaN 1 Median 2.1508 2.242 NaN 1 0 Median NaN NaN NaN 0 0 Median 43942000 7706700 36235000 43942000 7706700 36235000 0 0 0 12480 1207 12827 32891;32892;32893 51217;51218;51219;51220;51221 51221 5 SSLLVGNLK GFVIQEGAEPFPVGRSSLLVGNLKKKYAQG PFPVGRSSLLVGNLKKKYAQGFLPEKLPQQ R S S L K K 0 0 1 0 0 0 0 1 0 0 3 1 0 0 0 2 0 0 0 1 0 0 9 0 929.55458 B3KPJ4;B4DG61;B7ZLY0;A0A0A0MSI2;Q8IXK0 B3KPJ4 196 204 PHC2 Polyhomeotic-like protein 2 yes no 2 0.0067182 63.48 2 1.7163 1.7324 NaN 1 Median 1.7163 1.7324 NaN 1 0 Median NaN NaN NaN 0 0 Median 10072000 3417200 6654300 10072000 3417200 6654300 0 0 0 12481 479 12828 32894;32895 51222;51223 51222 2 SSLQSQCLNEVLK DLCSRVTFVNFTVTRSSLQSQCLNEVLKAE TRSSLQSQCLNEVLKAERPDVDEKRSDLLK R S S L K A 0 0 1 0 1 2 1 0 0 0 3 1 0 0 0 3 0 0 0 1 0 0 13 0 1504.7555 Q14204;H0YJ21 Q14204 3706 3718 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.056167 27.914 1 0.8622 0.72835 NaN 1 Median NaN NaN NaN 0 0 Median 0.8622 0.72835 NaN 1 0 Median 1966200 1109700 856510 0 0 0 1966200 1109700 856510 12482 1729 12829 32896 51224 51224 1 SSLSSAQADFNQLAELDR LEEIKALREAHDAFRSSLSSAQADFNQLAE SSAQADFNQLAELDRQIKSFRVASNPYTWF R S S D R Q 3 1 1 2 0 2 1 0 0 0 3 0 0 1 0 4 0 0 0 0 0 0 18 0 1950.9283 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16;Q14917 A0A0D9SF54 2123 2140 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 3.4956E-17 122.97 2 1.738 1.8738 NaN 1 Median 1.738 1.8738 NaN 1 0 Median NaN NaN NaN 0 0 Median 39219000 8276100 30943000 39219000 8276100 30943000 0 0 0 12483 523 12830 32897;32898 51225;51226 51225 2 SSLYEQMGDHK ALKYEPTNVRYLWERSSLYEQMGDHKMAMD LWERSSLYEQMGDHKMAMDGYRRILNLLSP R S S H K M 0 0 0 1 0 1 1 1 1 0 1 1 1 0 0 2 0 0 1 0 0 0 11 0 1293.566 Q9Y5Q9 Q9Y5Q9 258 268 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 1.3796E-06 111.61 1 1.3147 1.2956 NaN 1 Median 1.3147 1.2956 NaN 1 0 Median NaN NaN NaN 0 0 Median 8555000 4197600 4357400 8555000 4197600 4357400 0 0 0 12484 2150 12831 32899 51227 51227 2002 1 SSLYSEVDVHFR KPGEMPYVCQVCQYRSSLYSEVDVHFRMIH QYRSSLYSEVDVHFRMIHEDTRHLLCPYCL R S S F R M 0 1 0 1 0 0 1 0 1 0 1 0 0 1 0 3 0 0 1 2 0 0 12 0 1437.6888 Q7Z3K3 Q7Z3K3 599 610 POGZ Pogo transposable element with ZNF domain yes yes 2 0.0032943 66.056 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2349300 0 2349300 2349300 0 2349300 0 0 0 12485 1874 12832 32900 51228;51229 51228 2 SSMGMDISAIDLINIESFSSR TMDGAKAKAILDASRSSMGMDISAIDLINI ISAIDLINIESFSSRVVSLSEYRQSLHTYL R S S S R V 1 1 1 2 0 0 1 1 0 4 1 0 2 1 0 6 0 0 0 0 0 0 21 0 2272.0715 A8K9K6;O00567;A0PJ92;H0YDU4 A8K9K6 250 270 NOP56 Nucleolar protein 56 yes no 2 1.6605E-29 136.81 2 1.5064 1.6685 NaN 1 Median 1.5064 1.6685 NaN 1 0 Median NaN NaN NaN 0 0 Median 91975000 54699000 37276000 91975000 54699000 37276000 0 0 0 12486 785 12833 32901;32902 51230;51231;51232 51230 623;624 3 SSMNVDEAFSSLAR LAREHGIRFFETSAKSSMNVDEAFSSLARD KSSMNVDEAFSSLARDILLKSGGRRSGNGN K S S A R D 2 1 1 1 0 0 1 0 0 0 1 0 1 1 0 4 0 0 0 1 0 0 14 0 1512.6879 A0A024RB27;Q504R6;P51153;A0A087WWB9 A0A024RB27 154 167 hCG_24991;RAB13 Ras-related protein Rab-13 yes no 2 0.00020195 77.674 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16179000 0 16179000 16179000 0 16179000 0 0 0 12487 322 12834 32903;32904 51233;51234 51234 247 2 SSNLSVTTDFSESLQSSNIESK TKWIDATSGIYNSEKSSNLSVTTDFSESLQ TDFSESLQSSNIESKEINGIHDESNAFESK K S S S K E 0 0 2 1 0 1 2 0 0 1 2 1 0 1 0 8 2 0 0 1 0 0 22 0 2359.1027 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424;H0YDQ3;H0YE95;H0YDG6 A0A1P7ZIM8 761 782 LMO7 LIM domain only protein 7 yes no 2 4.1131E-06 57.288 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3221400 0 3221400 3221400 0 3221400 0 0 0 12488 640 12835 32905 51235 51235 1 SSNSLVFQTLPR RAAEISAMLKAVTQKSSNSLVFQTLPRHMR TQKSSNSLVFQTLPRHMRRRAMSHNVKRLP K S S P R H 0 1 1 0 0 1 0 0 0 0 2 0 0 1 1 3 1 0 0 1 0 0 12 0 1347.7147 Q96F88;Q99575;E5RK39 Q96F88 126 137 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 5.5297E-20 136.49 2 2 0.6218 0.5845 5.5521 3 Plateau 0.55339 0.5845 NaN 1 0 Median 0.63096 0.53109 0.65703 2 0 Median 92688000 67664000 25024000 76166000 57711000 18455000 16522000 9953600 6568700 12489 1965 12836 32906;32907;32908;32909 51236;51237;51238;51239;51240 51238 5 SSPAAFINPPIGTVTPALK PRQVADAREKISLKRSSPAAFINPPIGTVT AFINPPIGTVTPALKLTKTIQVPQQKAMAP R S S L K L 3 0 1 0 0 0 0 1 0 2 1 1 0 1 4 2 2 0 0 1 0 0 19 0 1880.0407 Q96DI9;F6VRR5;B4E0L0;Q9BY77;Q8WUT1;F8WCX5;Q659C6;B4DSH9;Q6R954;F8WEE2 Q96DI9 122 140 POLDIP3;DKFZp434G0310;PDIP46 Polymerase delta-interacting protein 3 yes no 2 3.6653E-08 92.856 2 2 0.83344 0.7466 15.514 4 Median 0.83179 0.85204 2.8106 2 0 Median 0.83344 0.65333 3.0004 2 0 Median 30779000 17097000 13682000 23915000 13181000 10734000 6864600 3916800 2947800 12490 1063 12837 32910;32911;32912;32913 51241;51242;51243;51244;51245;51246 51243 6 SSPEGPDPPVLTEVSK PPDLNPETEESIPSRSSPEGPDPPVLTEVS SPEGPDPPVLTEVSKQDDQQPLDLEGVKRK R S S S K Q 0 0 0 1 0 0 2 1 0 0 1 1 0 0 4 3 1 0 0 2 0 0 16 0 1637.8148 Q03164 Q03164 1684 1699 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.019615 28.903 1 0.84698 0.85037 NaN 1 Median 0.84698 0.85037 NaN 1 0 Median NaN NaN NaN 0 0 Median 7477400 3709000 3768400 7477400 3709000 3768400 0 0 0 12491 1680 12838 32914 51247;51248;51249 51247 3 SSPELEDTATSSK EESMTDDKTTKIPCKSSPELEDTATSSKRR CKSSPELEDTATSSKRRPRTRAQKVEVKEE K S S S K R 1 0 0 1 0 0 2 0 0 0 1 1 0 0 1 4 2 0 0 0 0 0 13 0 1350.6151 P46013 P46013 2827 2839 MKI67 Antigen KI-67 yes yes 2 1.1427E-08 113.63 2 1 2.0365 2.1946 7.1131 3 Median 1.9907 2.193 0.10013 2 0 Median 3.1495 2.4806 NaN 1 0 Median 110970000 36106000 74861000 105270000 34797000 70473000 5696900 1308600 4388300 12492 1569 12839 32915;32916;32917 51250;51251;51252;51253 51250 4 SSPEPVALTESETEYVIR LAAVPEFRGLGPLFKSSPEPVALTESETEY EPVALTESETEYVIRCTKHTFTNHMVFQFD K S S I R C 1 1 0 0 0 0 4 0 0 1 1 0 0 0 2 3 2 0 1 2 0 0 18 0 2005.9844 Q9Y678;B3KW21;Q8WUI6 Q9Y678 632 649 COPG1;COPG Coatomer subunit gamma-1 yes no 2 0.00043855 45.115 2 2 1.5359 1.5435 30.701 3 Plateau 1.5359 1.5435 NaN 1 0 Median 1.079 0.90725 1.5664 2 0 Median 37570000 11742000 25828000 27850000 6961200 20889000 9719700 4781200 4938500 12493 2151 12840 32918;32919;32920;32921 51254;51255;51256;51257;51258;51259 51258 6 SSPEVSSINQEALVLTAK RLISLPLSRIRVIMKSSPEVSSINQEALVL EVSSINQEALVLTAKATIYYQRRF______ K S S A K A 2 0 1 0 0 1 2 0 0 1 2 1 0 0 1 4 1 0 0 2 0 0 18 0 1871.984 E5RGS9;Q9NRG0 E5RGS9 30 47 CHRAC1 Chromatin accessibility complex protein 1 yes no 2 0.00064348 56.599 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3590500 0 3590500 0 0 0 3590500 0 3590500 12494 1212 12841 32922 51260 51260 1 SSPGQTPEEGAQALAEFAALHGPALR ______________________________ QALAEFAALHGPALRASGVPERYWGRLLHK R S S L R A 6 1 0 0 0 2 3 3 1 0 3 0 0 1 3 2 1 0 0 0 0 0 26 0 2604.2932 A0A024R4U3;Q14166;Q9BR23 A0A024R4U3 15 40 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 3 0.0038199 23.394 1 2.5177 2.5789 NaN 1 Median 2.5177 2.5789 NaN 1 0 Median NaN NaN NaN 0 0 Median 14465000 3633200 10832000 14465000 3633200 10832000 0 0 0 12495 161 12842 32923 51261;51262 51261 2 SSPSILAVQR VQAKPPKVDGAEFWKSSPSILAVQRSAILK AEFWKSSPSILAVQRSAILKKQQQQQQQQQ K S S Q R S 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 3 0 0 0 1 0 0 10 0 1056.5928 O14646;Q7Z4M7 O14646 89 98 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 2 0.0011713 75.043 2 0.72308 0.73836 6.7176 2 Median 0.72308 0.73836 6.7176 2 0 Median NaN NaN NaN 0 0 Median 39250000 22435000 16815000 39250000 22435000 16815000 0 0 0 12496 1366 12843 32924;32925 51263;51264 51264 2 SSPVEFECINEK GTFQTTMTKLKEASRSSPVEFECINEKKRQ ASRSSPVEFECINEKKRQKKKSYKNSGVIS R S S E K K 0 0 1 0 1 0 3 0 0 1 0 1 0 1 1 2 0 0 0 1 0 0 12 0 1437.6446 A0A024R994;O75131;Q05DL8;H0YB26 A0A024R994 242 253 CPNE3 Copine-3 yes no 2 0.06067 30.889 1 0.87383 0.72462 NaN 1 Median NaN NaN NaN 0 0 Median 0.87383 0.72462 NaN 1 0 Median 1578600 723670 854920 0 0 0 1578600 723670 854920 12497 271 12844 32926 51265 51265 1 SSQAFFSK KASFIKDKGKDKALKSSQAFFSKLQDQVKM GKDKALKSSQAFFSKLQDQVKMQINDA___ K S S S K L 1 0 0 0 0 1 0 0 0 0 0 1 0 2 0 3 0 0 0 0 0 0 8 0 900.43413 B3KPV5;O00566 B3KPV5 642 649 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 0.0065363 86.833 2 3 1.2341 1.0171 6.6415 5 Median 1.0021 1.1288 3.7313 2 0 Median 1.2541 1.003 1.037 3 0 Plateau 177560000 87862000 89695000 158740000 79842000 78902000 18814000 8020400 10794000 12498 924 12845 32927;32928;32929;32930;32931 51266;51267;51268;51269;51270;51271;51272 51268 7 SSQGTSYDSYR HLLREWGEELQAVLRSSQGTSYDSYRLCDS AVLRSSQGTSYDSYRLCDSLTSFSQNATLY R S S Y R L 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 4 1 0 2 0 0 0 11 0 1249.5211 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678 Q9HBB9 326 336 GEMIN4 Gem-associated protein 4 yes no 2 0.00034828 85.533 1 1.2836 1.2739 NaN 1 Median 1.2836 1.2739 NaN 1 0 Median NaN NaN NaN 0 0 Median 8346500 3496400 4850100 8346500 3496400 4850100 0 0 0 12499 1940 12846 32932 51273 51273 1 SSQLLEPAVEETTK QELQITTGRESKRLKSSQLLEPAVEETTKK KSSQLLEPAVEETTKKEVKVSSVTKRTPRR K S S T K K 1 0 0 0 0 1 3 0 0 0 2 1 0 0 1 2 2 0 0 1 0 0 14 0 1530.7777 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1846 1859 AHCTF1 Protein ELYS yes no 2 0.00011412 82.85 2 2 1.4835 1.1992 19.409 4 Median 1.289 1.407 29.565 2 0 Median 1.4835 1.1992 0.91891 2 0 Median 100630000 48115000 52512000 87226000 42852000 44374000 13401000 5263100 8138100 12500 1945 12847 32933;32934;32935;32936 51274;51275;51276;51277;51278 51276 5 SSQQPSTPQQAPPGQPQQGTFVAHK STQPPKSAKPPAGGKSSQQPSTPQQAPPGQ APPGQPQQGTFVAHKEIKLTLLNKAADKGS K S S H K E 2 0 0 0 0 7 0 2 1 0 0 1 0 1 5 3 2 0 0 1 0 0 25 0 2630.2837 E7ERS3;B4DTK7;Q86VM9;H3BRH3;B3KRL4 E7ERS3 814 838 ZC3H18;NHN1 Zinc finger CCCH domain-containing protein 18 yes no 3 6.1961E-06 38.122 2 1 0.80066 0.74543 51.44 2 Median 1.0102 1.0724 NaN 1 0 Median 0.63457 0.51813 NaN 1 0 Median 30363000 8609100 21754000 25656000 5554300 20102000 4706700 3054800 1651900 12501 1033 12848 32937;32938;32939 51279;51280;51281;51282;51283 51282 5 SSQSSSQQFSGIGR GAGTYGASSTTSTGRSSQSSSQQFSGIGRS RSSQSSSQQFSGIGRSGQQPQPLMSQQFAQ R S S G R S 0 1 0 0 0 3 0 2 0 1 0 0 0 1 0 6 0 0 0 0 0 0 14 0 1454.675 Q59F66;Q92841;Q9UQL5 Q59F66 675 688 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 8.2133E-05 88.187 1 1.4914 1.4661 NaN 1 Median 1.4914 1.4661 NaN 1 0 Median NaN NaN NaN 0 0 Median 14292000 8039800 6252500 14292000 8039800 6252500 0 0 0 12502 1801 12849 32940 51284 51284 1 SSQSSVTVENASKPDFTK SNPVAASPRFHLVSKSSQSSVTVENASKPD SSVTVENASKPDFTKNSQVGSDNSSILLFD K S S T K N 1 0 1 1 0 1 1 0 0 0 0 2 0 1 1 5 2 0 0 2 0 0 18 1 1910.9222 Q8ND82;Q9UJJ2 Q8ND82 114 131 ZNF280C Zinc finger protein 280C yes no 2;3 2.5476E-22 177.38 3 0.96738 1.1192 18.064 3 Median 0.96738 1.1192 18.064 3 0 Median NaN NaN NaN 0 0 Median 96709000 51002000 45707000 96709000 51002000 45707000 0 0 0 12503 1924 12850 32941;32942;32943 51285;51286;51287;51288 51287 4 SSSAEGHTDAVLDLSWNK LGSKLSKKKKKKGKKSSSAEGHTDAVLDLS AEGHTDAVLDLSWNKLIRNVLASASADNTV K S S N K L 2 0 1 2 0 0 1 1 1 0 2 1 0 0 0 4 1 1 0 1 0 0 18 0 1915.8912 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 249 266 PWP1 Periodic tryptophan protein 1 homolog yes no 3 2.0683E-05 52.814 1 1 0.87875 0.78989 36.453 2 Median 0.58992 0.61041 NaN 1 0 Median 1.309 1.0222 NaN 1 0 Median 49171000 26683000 22488000 33095000 19727000 13367000 16077000 6955500 9121300 12504 339 12851 32944;32945 51289;51290;51291 51290 3 SSSGLLEWESK KRPSSVKVFSGKSERSSSGLLEWESKSDAL KSERSSSGLLEWESKSDALETLGFLNHYQM R S S S K S 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 4 0 1 0 0 0 0 11 0 1221.5877 B2R959;Q6NTA2;P14866;M0QXS5;M0QYT0;M0R076 B2R959 511 521 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 0.00046797 76.143 2 1.5089 1.6525 4.2384 2 Median 1.5089 1.6525 4.2384 2 0 Median NaN NaN NaN 0 0 Median 92193000 31131000 61061000 92193000 31131000 61061000 0 0 0 12505 865 12852 32946;32947 51292;51293;51294;51295;51296 51293 5 SSSHDSGTDITSVTLGDTTAVK VATSSSAKKATGRKKSSSHDSGTDITSVTL TDITSVTLGDTTAVKTKILIKKGRGNLEKT K S S V K T 1 0 0 3 0 0 0 2 1 1 1 1 0 0 0 5 5 0 0 2 0 0 22 0 2178.0288 Q03164;E9PR05;Q9HB80 Q03164 936 957 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 3 1.7922E-07 53.359 2 2 0.93321 0.93858 35.827 3 Median 0.93301 0.92842 1.5391 2 0 Median 2.1039 1.7263 NaN 1 0 Median 68060000 27839000 40221000 51610000 24574000 27037000 16450000 3265500 13184000 12506 1680 12853 32948;32949;32950;32951 51297;51298;51299;51300;51301 51297 5 SSSIIGSSSASHTSQATSGANSK KGGSATCRKISSKTKSSSIIGSSSASHTSQ SASHTSQATSGANSKLGIMAPPKPINRPFL K S S S K L 3 0 1 0 0 1 0 2 1 2 0 1 0 0 0 10 2 0 0 0 0 0 23 0 2151.004 B2RAN0;P54132;H0YNU5;B7ZKN7;B7Z2X2 B2RAN0 1373 1395 BLM Bloom syndrome protein yes no 2;3 7.0678E-60 166.69 3 2 0.9832 0.88012 34.452 4 Median 0.62641 0.65213 1.2878 2 0 Median 1.511 1.1841 0.85067 2 0 Median 55362000 33117000 22245000 48039000 30296000 17743000 7322700 2820500 4502300 12507 873 12854 32952;32953;32954;32955;32956 51302;51303;51304;51305;51306;51307;51308 51303 7 SSSLNSGNYLNPACR GSAIPKEENLSEDSKSSSLNSGNYLNPACR SSSLNSGNYLNPACRNPMYIHTSVSQDFSR K S S C R N 1 1 3 0 1 0 0 1 0 0 2 0 0 0 1 4 0 0 1 0 0 0 15 0 1638.742 Q9UQR0;B4DZR9;B4DRC2;H0Y6S1 Q9UQR0 546 560 SCML2 Sex comb on midleg-like protein 2 yes no 2 0.0010921 58.676 1 2 0.97288 0.84093 5.1028 2 Median NaN NaN NaN 0 0 Median 0.97288 0.84093 5.1028 2 0 Median 13371000 11736000 1634500 9705500 9705500 0 3665100 2030500 1634500 12508 2118 12855 32957;32958;32959 51309;51310;51311 51310 3 SSSPAPADIAQTVQEDLR PEPVLEETAPEDAQKSSSPAPADIAQTVQE PAPADIAQTVQEDLRTFSWASVTSKNLPPS K S S L R T 3 1 0 2 0 2 1 0 0 1 1 0 0 0 2 3 1 0 0 1 0 0 18 0 1883.9225 Q6FI03;Q5U0Q1;Q13283;B7Z8K4;Q53HH4;Q32P45 Q6FI03 230 247 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2 7.4521E-06 81.904 1 0.64177 0.68972 NaN 1 Median 0.64177 0.68972 NaN 1 0 Median NaN NaN NaN 0 0 Median 25574000 16492000 9082100 25574000 16492000 9082100 0 0 0 12509 1710 12856 32960 51312;51313 51312 2 SSSQIPAQPSVAK NNENKKETDEVSNTKSSSQIPAQPSVAKVP TKSSSQIPAQPSVAKVPYGKGPSFNQERGT K S S A K V 2 0 0 0 0 2 0 0 0 1 0 1 0 0 2 4 0 0 0 1 0 0 13 0 1298.683 E7EPN9;Q9Y520;B4DQN8;A0A0A0MS30 E7EPN9 377 389 PRRC2C Protein PRRC2C yes no 2 0.039559 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4624600 0 4624600 4624600 0 4624600 0 0 0 12510 1219 12857 32961 51314 51314 1 SSSSQVVGPVQEEEYVAEK GPSLASLEGEEDKGKSSSSQVVGPVQEEEY QVVGPVQEEEYVAEKLPSRFIESAHTELAK K S S E K L 1 0 0 0 0 2 4 1 0 0 0 1 0 0 1 4 0 0 1 4 0 0 19 0 2050.9695 I3L0W0;A0A140VK05;B4DN86;Q92667 I3L0W0 62 80 AKAP1 A-kinase anchor protein 1, mitochondrial yes no 2 0.0024818 53.377 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12511 614 12858 32962 51315 51315 1 SSSSSAASDTATSTQRPLR GYAILLAVPGSSDSRSSSSSAASDTATSTQ SAASDTATSTQRPLRNLVSYLKQKQAAGVI R S S L R N 3 2 0 1 0 1 0 0 0 0 1 0 0 0 1 7 3 0 0 0 0 0 19 1 1908.9137 A0A087WWP4;Q96T37;Q59EY1 A0A087WWP4 827 845 RBM15 Putative RNA-binding protein 15 yes no 3 0.00022323 40.349 1 1 0.95345 0.97201 NaN 1 Median 0.95345 0.97201 NaN 1 0 Median NaN NaN NaN 0 0 Median 12186000 6052700 6133800 11486000 6052700 5433400 700390 0 700390 12512 427 12859 32963;32964 51316;51317 51316 2 SSSSSQESLNRPLSAK LKNSDSIVSLPQSDRSSSSSQESLNRPLSA SSSSQESLNRPLSAKRSPTGSTTSRVLIHI R S S A K R 1 1 1 0 0 1 1 0 0 0 2 1 0 0 1 7 0 0 0 0 0 0 16 1 1676.8329 B7Z5R7;B7Z4E5;B7Z7Q8;H0Y5T1;F8WA11;Q7Z460 B7Z5R7 324 339 CLASP1 CLIP-associating protein 1 yes no 2 0.0021188 50.897 1 1.1869 1.3139 NaN 1 Median 1.1869 1.3139 NaN 1 0 Median NaN NaN NaN 0 0 Median 7751300 3289700 4461700 7751300 3289700 4461700 0 0 0 12513 1090 12860 32965 51318 51318 1 SSSSTEQSLMMGLR RGGPGSGGHGPLRYRSSSSTEQSLMMGLRV RSSSSTEQSLMMGLRVEDGAQQCLDCGLCF R S S L R V 0 1 0 0 0 1 1 1 0 0 2 0 2 0 0 5 1 0 0 0 0 0 14 0 1512.6912 Q8N1G0 Q8N1G0 1116 1129 ZNF687 Zinc finger protein 687 yes yes 2 0.0028278 48.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5252300 0 5252300 5252300 0 5252300 0 0 0 12514 1905 12861 32966 51319 51319 1744;1745 1 SSSTALTTNVTEQTEK PEDLEETVFTASKPKSSSTALTTNVTEQTE SSTALTTNVTEQTEKDGDKDVFASEVTPSD K S S E K D 1 0 1 0 0 1 2 0 0 0 1 1 0 0 0 3 5 0 0 1 0 0 16 0 1695.8163 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1342 1357 AHCTF1 Protein ELYS yes no 2 8.6872E-34 156.36 2 2 1.9953 1.9008 19.77 4 Median 1.466 1.6162 1.4533 2 0 Median 2.7572 2.271 3.6815 2 0 Median 184050000 68759000 115290000 114530000 50803000 63728000 69515000 17957000 51559000 12515 1945 12862 32967;32968;32969;32970 51320;51321;51322;51323;51324;51325;51326;51327 51325 8 SSSVGSSSSYPISPAVSR FADMLSGNAGGFRSRSSSVGSSSSYPISPA VGSSSSYPISPAVSRTQLASWSDPTEETGP R S S S R T 1 1 0 0 0 0 0 1 0 1 0 0 0 0 2 9 0 0 1 2 0 0 18 0 1753.8483 Q15149;D3DWL0;Q96IE3 Q15149 4384 4401 PLEC;PLEC1 Plectin yes no 2 1.7313E-05 95.631 2 1 1.9001 1.9947 8.5929 3 Median 1.8312 1.9973 12.152 2 0 Median 2.3192 1.9947 NaN 1 0 Median 114420000 38947000 75475000 106760000 36260000 70501000 7661400 2687900 4973600 12516 1754 12863 32971;32972;32973 51328;51329;51330;51331;51332;51333;51334;51335 51332 8 SSTAISSIAADGEFLHELEEK QQRLEYIARAILSAKSSTAISSIAADGEFL SIAADGEFLHELEEKMEVARIQLQIQETLQ K S S E K M 3 0 0 1 0 0 4 1 1 2 2 1 0 1 0 4 1 0 0 0 0 0 21 0 2233.075 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1089 1109 NUP155 Nuclear pore complex protein Nup155 yes no 3 3.4289E-07 52.72 1 1 1.4075 1.268 22.763 2 Median 1.4967 1.4895 NaN 1 0 Median 1.3235 1.0795 NaN 1 0 Median 24872000 10149000 14723000 19032000 7658500 11373000 5840800 2490600 3350200 12517 39 12864 32974;32975 51336;51337;51338;51339 51336 4 SSTATHPPGPAVQLNK DTPFLPKPLFFRRAKSSTATHPPGPAVQLN STATHPPGPAVQLNKTPSSSKKVTFGLNRN K S S N K T 2 0 1 0 0 1 0 1 1 0 1 1 0 0 3 2 2 0 0 1 0 0 16 0 1603.8318 Q14684 Q14684 661 676 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2;3 7.2105E-12 112.7 3 1 1.146 1.0158 19.199 2 Median 0.88126 0.88684 NaN 1 0 Median 1.4903 1.1635 NaN 1 0 Median 47976000 28431000 19545000 35970000 24285000 11684000 12006000 4145700 7860700 12518 1740 12865 32976;32977;32978;32979 51340;51341;51342;51343;51344;51345 51341 6 SSTDFSELEQPR GKNVESTNSNAYTQRSSTDFSELEQPRSCL TQRSSTDFSELEQPRSCLFEQGTRRVGPSS R S S P R S 0 1 0 1 0 1 2 0 0 0 1 0 0 1 1 3 1 0 0 0 0 0 12 0 1394.6314 A0A024RAC0;Q86V48 A0A024RAC0 956 967 LUZP1 Leucine zipper protein 1 yes no 2 0.0094922 57.348 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12519 300 12866 32980;32981;32982 51346;51347;51348 51348 3 SSTEIPLETCCSSELK PSVSQTKAEQDSDNKSSTEIPLETCCSSEL STEIPLETCCSSELKGGGSGTSLEREQFEG K S S L K G 0 0 0 0 2 0 3 0 0 1 2 1 0 0 1 4 2 0 0 0 0 0 16 0 1839.823 Q8NCN4 Q8NCN4 520 535 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 2 0.01823 43.544 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12520 1923 12867 32983 51349 51349 1 SSTFSDVEAHFR KPGEMPYVCQVCQFRSSTFSDVEAHFRAAH QFRSSTFSDVEAHFRAAHENTKNLLCPFCL R S S F R A 1 1 0 1 0 0 1 0 1 0 0 0 0 2 0 3 1 0 0 1 0 0 12 0 1381.6262 Q8ND82 Q8ND82 422 433 ZNF280C Zinc finger protein 280C yes yes 3 0.015765 32.439 1 1 1.2467 1.1587 20.852 2 Median 0.97961 0.99987 NaN 1 0 Median 1.5866 1.3428 NaN 1 0 Median 23747000 11202000 12545000 18786000 9118800 9666900 4961100 2082900 2878300 12521 1924 12868 32984;32985 51350;51351 51350 2 SSTGEASENGLEDIDR SGKLRKKKKKQKNKKSSTGEASENGLEDID STGEASENGLEDIDRILERIEDSTGLNRPG K S S D R I 1 1 1 2 0 0 3 2 0 1 1 0 0 0 0 3 1 0 0 0 0 0 16 0 1678.7282 Q9BQ70;Q9H7D3;H3BSP8;H3BTU3;H3BS87;H3BMJ8 Q9BQ70 137 152 TCF25 Transcription factor 25 yes no 2 0.0001405 83.314 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12522 1996 12869 32986;32987 51352;51353 51352 2 SSTGPEPPAPTPLLAER KKEKSATRPSPSPERSSTGPEPPAPTPLLA TGPEPPAPTPLLAERHGGSPQPLATTPLSQ R S S E R H 2 1 0 0 0 0 2 1 0 0 2 0 0 0 5 2 2 0 0 0 0 0 17 0 1718.8839 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8;I3L1I8 A0A140VK53 357 373 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 2 6.6809E-05 72.891 2 2 0.90497 0.87334 36.34 4 Median 1.0779 1.2015 1.684 2 0 Median 0.76151 0.64044 0.42957 2 0 Median 111750000 56642000 55111000 101050000 50800000 50246000 10707000 5841500 4865500 12523 619 12870 32988;32989;32990;32991 51354;51355;51356;51357;51358;51359;51360;51361 51359 8 SSTPAQLAFMR VYLAIQSSQAGGELKSSTPAQLAFMRVYCG GELKSSTPAQLAFMRVYCGPSPSCLVQSSS K S S M R V 2 1 0 0 0 1 0 0 0 0 1 0 1 1 1 2 1 0 0 0 0 0 11 0 1207.6019 A6NEM2;P51610;H7C1C4 A6NEM2 1985 1995 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.00014003 88.948 2 1.5688 1.6009 15.773 2 Median 1.5688 1.6009 15.773 2 0 Median NaN NaN NaN 0 0 Median 22794000 8583700 14211000 22794000 8583700 14211000 0 0 0 12524 680 12871 32992;32993 51362;51363 51362 526 2 SSTPLPTISSSAENTR EKKLLKLREQGTESRSSTPLPTISSSAENT STPLPTISSSAENTRQNGSNDSDRYSDNEE R S S T R Q 1 1 1 0 0 0 1 0 0 1 1 0 0 0 2 5 3 0 0 0 0 0 16 0 1646.8111 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;H0YJH7;P42166 P42166 158 173 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2 3.9259E-05 98.105 2 2 1.1335 1.073 14.945 4 Median 1.0967 1.2444 8.255 2 0 Median 1.1382 0.97387 1.0097 2 0 Median 271000000 124180000 146810000 215540000 98560000 116980000 55457000 25624000 29834000 12525 334;1562 12872 32994;32995;32996;32997 51364;51365;51366;51367;51368;51369;51370;51371 51366 8 SSTVATLQGTPDHGDPR ERERWAVIQGQAVRKSSTVATLQGTPDHGD TVATLQGTPDHGDPRTPGPPRSTPLEENVV K S S P R T 1 1 0 2 0 1 0 2 1 0 1 0 0 0 2 2 3 0 0 1 0 0 17 0 1737.8282 Q8IVT2 Q8IVT2 155 171 MISP Mitotic interactor and substrate of PLK1 yes yes 2 0.00049092 63.091 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12526 1892 12873 32998;32999 51372;51373 51373 2 SSTVHILSQLLR GSEEPRHSEAADSPRSSTVHILSQLLRLRQ SPRSSTVHILSQLLRLRQCCCHLSLLKSAL R S S L R L 0 1 0 0 0 1 0 0 1 1 3 0 0 0 0 3 1 0 0 1 0 0 12 0 1352.7776 A0A024R0F1;Q9UNY4 A0A024R0F1 911 922 TTF2 Transcription termination factor 2 yes no 3 0.013607 33.589 1 0.5328 0.52786 NaN 1 Median 0.5328 0.52786 NaN 1 0 Median NaN NaN NaN 0 0 Median 12178000 9520600 2657500 12178000 9520600 2657500 0 0 0 12527 44 12874 33000 51374 51374 1 SSVAVLTQESFAEHR ______________________________ SSVAVLTQESFAEHRSGLVPQQIKVATLNS M S S H R S 2 1 0 0 0 1 2 0 1 0 1 0 0 1 0 3 1 0 0 2 0 0 15 0 1659.8216 A0A024R4E5;Q00341;B2R5V9;B4DKR8;C9J5E5;C9JIZ1;C9JZI8;C9JHS7;C9JHZ8;C9JES8;C9JT62;C9JK79;C9JMQ6;C9JQ82;C9JBS3;C9JEJ8;C9JHN6;C9JHS9;C9J739 A0A024R4E5 2 16 HDLBP Vigilin yes no 2 8.6145E-05 82.362 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12528 154 12875 33001 51375 51375 1 SSVINTLR KQISVGFIGYPNVGKSSVINTLRSKKVCNV GYPNVGKSSVINTLRSKKVCNVAPIAGETK K S S L R S 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 1 0 0 8 0 888.50288 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 324 331 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0022675 101.33 1 2 1.2476 1.0921 2.7093 3 Median 1.0313 1.1151 NaN 1 0 Median 1.2506 1.0743 2.3271 2 0 Median 36200000 17502000 18698000 26925000 13268000 13658000 9274700 4234100 5040500 12529 1721 12876 33002;33003;33004 51376;51377;51378;51379 51377 4 SSVLIAQQTDTSDPEK LAFPSPEKLLRLGPKSSVLIAQQTDTSDPE SVLIAQQTDTSDPEKVVSAFLKVSSVFKDE K S S E K V 1 0 0 2 0 2 1 0 0 1 1 1 0 0 1 3 2 0 0 1 0 0 16 0 1717.837 B4DY16;A0A024R1U0;P46060;B4E0U0;Q9BSK3 B4DY16 398 413 RANGAP1 Ran GTPase-activating protein 1 yes no 2 1.1619E-47 167.71 2 2.3738 2.4629 NaN 1 Median 2.3738 2.4629 NaN 1 0 Median NaN NaN NaN 0 0 Median 33987000 6103900 27883000 33987000 6103900 27883000 0 0 0 12530 90 12877 33005;33006 51380;51381;51382 51380 3 SSVNCPFSSQDMK RKILTTEGRNALIHKSSVNCPFSSQDMKYP HKSSVNCPFSSQDMKYPSPFFVFGEKIRTR K S S M K Y 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 4 0 0 0 1 0 0 13 0 1485.6228 Q08211;B3KU66 Q08211 1025 1037 DHX9 ATP-dependent RNA helicase A yes no 2 1.8392E-19 147.3 2 1 1.6406 1.825 35.405 3 Plateau 1.6676 1.7454 6.3035 2 0 Median 1.1645 0.94993 NaN 1 0 Median 81082000 31493000 49589000 75145000 28814000 46331000 5937300 2679400 3257900 12531 1691 12878 33007;33008;33009 51383;51384;51385;51386;51387 51386 1520 4 SSVQEECVSTISSSK PSEELELDKWKTTMKSSVQEECVSTISSSK SSVQEECVSTISSSKDEDPLAATREFIEMW K S S S K D 0 0 0 0 1 1 2 0 0 1 0 1 0 0 0 6 1 0 0 2 0 0 15 0 1626.7407 Q7L0Y3;C9JVB6 Q7L0Y3 72 86 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 4.4612E-15 127.56 3 1.6136 1.6879 NaN 1 Median 1.6136 1.6879 NaN 1 0 Median NaN NaN NaN 0 0 Median 17338000 4776900 12561000 17338000 4776900 12561000 0 0 0 12532 1871 12879 33010;33011;33012 51388;51389;51390;51391 51390 4 SSVQEECVSTISSSKDEDPLAATR PSEELELDKWKTTMKSSVQEECVSTISSSK TISSSKDEDPLAATREFIEMWRLLGREVPE K S S T R E 2 1 0 2 1 1 3 0 0 1 1 1 0 0 1 6 2 0 0 2 0 0 24 1 2595.197 Q7L0Y3;C9JVB6 Q7L0Y3 72 95 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 3 0.054407 13.072 1 1.8826 1.6015 NaN 1 Median NaN NaN NaN 0 0 Median 1.8826 1.6015 NaN 1 0 Median 3157200 1390400 1766800 0 0 0 3157200 1390400 1766800 12533 1871 12880 33013 51392 51392 1 SSVSDAPVHITASGEPVPISEESEELDQK KLSESKSDGRERSKKSSVSDAPVHITASGE EPVPISEESEELDQKTFSICKERMRPVKAA K S S Q K T 2 0 0 2 0 1 5 1 1 2 1 1 0 0 3 6 1 0 0 3 0 0 29 0 3036.4411 O14646;H0Y8V4;A0A087WVF4 O14646 1384 1412 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 3 2.0167E-19 78.3 2 2 0.81074 0.80211 4.5573 4 Linear 0.71022 0.78318 4.5528 2 0 Median 0.9235 0.73428 0.10148 2 0 Median 126820000 75135000 51680000 91987000 57304000 34683000 34828000 17830000 16998000 12534 1366 12881 33014;33015;33016;33017 51393;51394;51395;51396;51397;51398;51399;51400;51401 51398 9 SSVTSAAAVSALAGVQDQLIEK RRNRKFKEAERLFSKSSVTSAAAVSALAGV AVSALAGVQDQLIEKREPGSGTESDTSPDF K S S E K R 5 0 0 1 0 2 1 1 0 1 2 1 0 0 0 4 1 0 0 3 0 0 22 0 2144.1325 B1AK63;Q9HAF1 B1AK63 70 91 MEAF6 Chromatin modification-related protein MEAF6 yes no 2 5.8166E-22 119.45 2 2 0.99674 1.0439 32.477 4 Linear 0.97168 0.99775 4.7324 2 0 Median 0.70852 0.56996 2.5809 2 0 Median 96610000 52414000 44196000 57020000 28804000 28215000 39590000 23609000 15980000 12535 813 12882 33018;33019;33020;33021 51402;51403;51404;51405;51406;51407;51408;51409 51405 8 SSVVPSVILKPENIK IREERTLTPISGGQRSSVVPSVILKPENIK SSVVPSVILKPENIKKRDAKEAKAQNEATS R S S I K K 0 0 1 0 0 0 1 0 0 2 1 2 0 0 2 3 0 0 0 3 0 0 15 1 1608.9451 B7Z8H0;Q96F82;Q13415 B7Z8H0 345 359 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 3 0.01735 24.467 2 1.4112 1.2137 13.448 2 Median NaN NaN NaN 0 0 Median 1.4112 1.2137 13.448 2 0 Median 8923500 4272700 4650800 0 0 0 8923500 4272700 4650800 12536 1103 12883 33022;33023 51410;51411 51411 2 SSWNQLQDLCR ______________________________ VCCKSSWNQLQDLCRLAKLSCPALGISKRN K S S C R L 0 1 1 1 1 2 0 0 0 0 2 0 0 0 0 2 0 1 0 0 0 0 11 0 1405.6408 O43463 O43463 14 24 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2 1.1363E-08 123.63 2 2 1.2164 1.134 28.48 4 Median 0.84523 0.88288 8.1109 2 0 Median 1.7326 1.4315 5.6541 2 0 Median 68590000 32902000 35688000 48396000 25405000 22991000 20193000 7497000 12696000 12537 1385 12884 33024;33025;33026;33027 51412;51413;51414;51415;51416;51417;51418;51419;51420 51415 9 SSWPASTQEGLR SEKISVDITLALESKSSWPASTQEGLRIQN ESKSSWPASTQEGLRIQNWLSAKVRKQLRL K S S L R I 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 3 1 1 0 0 0 0 12 0 1317.6313 Q8N884 Q8N884 328 339 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.0029259 57.348 1 2 1.5745 1.3135 2.0781 3 Median 1.1424 1.302 NaN 1 0 Median 1.5789 1.3339 2.1773 2 0 Median 161900000 70176000 91720000 118220000 52577000 65644000 43675000 17599000 26076000 12538 1914 12885 33028;33029;33030 51421;51422;51423;51424;51425 51423 5 SSYIAASTAKPPK MLGHVRRHMNKGETKSSYIAASTAKPPKEI TKSSYIAASTAKPPKEILKEADTDVQVCPN K S S P K E 3 0 0 0 0 0 0 0 0 1 0 2 0 0 2 3 1 0 1 0 0 0 13 1 1319.7085 B4DXX1;B2R713;Q7Z2T5 B4DXX1 58 70 TRMT1L TRMT1-like protein yes no 2 0.00060199 74.841 2 1.3677 1.5578 NaN 1 Median 1.3677 1.5578 NaN 1 0 Median NaN NaN NaN 0 0 Median 17210000 3012800 14197000 17210000 3012800 14197000 0 0 0 12539 846 12886 33031;33032 51426;51427;51428 51427 3 SSYLEYQK EEEITPTIQKLKEERSSYLEYQKVMREIEH QKLKEERSSYLEYQKVMREIEHLSRLYIAY R S S Q K V 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 2 0 0 0 8 0 1016.4815 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q7Z2X1;Q05D74;Q5T821 A0A024R158 215 222 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.00032878 133.81 2 2 1.1797 1.1477 29.629 4 Median 0.777 0.88541 0.95224 2 0 Median 1.7864 1.4791 0.13174 2 0 Median 385230000 193650000 191580000 308240000 165720000 142510000 76991000 27926000 49065000 12540 69 12887 33033;33034;33035;33036 51429;51430;51431;51432;51433;51434;51435 51432 7 STAELEAEELEK PVLQTKHRARAVTCKSTAELEAEELEKLQQ TCKSTAELEAEELEKLQQYKFKARELDPRI K S T E K L 2 0 0 0 0 0 5 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1347.6406 Q643R0;Q9ULW0;B3KM90 Q643R0 385 396 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 1.3083E-05 106.62 1 2 1.2288 0.98347 5.9185 3 Median 0.80921 0.90436 NaN 1 0 Median 1.2414 0.99855 2.1513 2 0 Median 140870000 74986000 65883000 96717000 55772000 40945000 44152000 19214000 24938000 12541 1837 12888 33037;33038;33039 51436;51437;51438;51439;51440;51441 51436 6 STAGDTHLGGEDFDNR DVSILTIEDGIFEVKSTAGDTHLGGEDFDN TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK K S T N R M 1 1 1 3 0 0 1 3 1 0 1 0 0 1 0 1 2 0 0 0 0 0 16 0 1690.7183 E9PN89;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;A0A024R6B5;P54652 V9HW22 221 236 HSPA8;HEL-S-72p;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2;3 8.4244E-18 133.98 4 5 1.3523 1.3776 17.345 7 Median 1.3533 1.5589 8.2649 4 0 Median 1.3523 1.1254 3.4276 3 0 Median 966320000 414640000 551680000 862190000 372010000 490170000 104130000 42629000 61503000 12542 1467;1248 12889 33040;33041;33042;33043;33044;33045;33046;33047;33048 51442;51443;51444;51445;51446;51447;51448;51449;51450;51451;51452;51453;51454;51455;51456;51457;51458 51450 17 STAGNFLVNPLEPK EQEQEHNGPLDNKGKSTAGNFLVNPLEPKN KSTAGNFLVNPLEPKNAEKLKVKIADLGNA K S T P K N 1 0 2 0 0 0 1 1 0 0 2 1 0 1 2 1 1 0 0 1 0 0 14 0 1485.7827 Q96SB4;A8K8B2;H3BLV9;A0A024RCU9 Q96SB4 473 486 SRPK1 SRSF protein kinase 1 yes no 2 0.00085746 57.836 1 2 1.2359 1.0122 21.945 3 Median 1.2646 1.374 NaN 1 0 Median 1.1854 0.95326 8.4785 2 0 Median 58452000 26592000 31861000 47001000 21115000 25886000 11451000 5476800 5974400 12543 1988 12890 33049;33050;33051 51459;51460;51461;51462 51461 4 STANVLEETTVK EKMKSEEQPMDLENRSTANVLEETTVKKEK ENRSTANVLEETTVKKEKEDEKELVKLPVI R S T V K K 1 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 3 0 0 2 0 0 12 0 1290.6667 Q96T23;H0YER1;H0YCN2;Q05DG0 Q96T23 266 277 RSF1 Remodeling and spacing factor 1 yes no 2 1.518E-37 176.6 1 2 0.90153 0.71016 17.771 3 Median 0.48999 0.5302 NaN 1 0 Median 0.91969 0.72056 2.0555 2 0 Median 43691000 27452000 16239000 36065000 23503000 12563000 7625400 3948900 3676600 12544 1991 12891 33052;33053;33054 51463;51464;51465 51463 3 STAPETAIECTQAPAPASEDEK SLKEEESIEGEKEVKSTAPETAIECTQAPA IECTQAPAPASEDEKVVVEPPEGEEKVEKA K S T E K V 5 0 0 1 1 1 4 0 0 1 0 1 0 0 3 2 3 0 0 0 0 0 22 0 2302.0271 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1578 1599 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 1.4711E-07 61.097 2 0.73422 0.80422 0.16588 2 Median 0.73422 0.80422 0.16588 2 0 Median NaN NaN NaN 0 0 Median 90885000 54043000 36841000 90885000 54043000 36841000 0 0 0 12545 515 12892 33055;33056 51466;51467;51468;51469;51470 51467 5 STAPLLDVFSSMLK DSEEQQESARAVPEKSTAPLLDVFSSMLKD KSTAPLLDVFSSMLKDTTSQHRAHLFDLNC K S T L K D 1 0 0 1 0 0 0 0 0 0 3 1 1 1 1 3 1 0 0 1 0 0 14 0 1507.7956 Q9BTC0 Q9BTC0 825 838 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0031328 42.031 1 1.4585 1.1443 NaN 1 Median NaN NaN NaN 0 0 Median 1.4585 1.1443 NaN 1 0 Median 2061400 858890 1202500 0 0 0 2061400 858890 1202500 12546 2002 12893 33057 51471 51471 1843 1 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR GSPGPGEGSAGGEKRSTAPSAAASASASAA GAEALELLEHCGVCRERLRPEREPRLLPCL R S T C R E 12 1 0 0 2 0 3 4 1 0 3 0 0 0 2 7 1 0 0 1 0 0 37 0 3441.5889 B2R8R5;Q13263 B2R8R5 33 69 TRIM28 Transcription intermediary factor 1-beta yes no 3 7.9452E-21 68.741 2 2 1.4616 1.3523 26.559 4 Median 1.7118 1.7408 10.096 2 0 Median 1.3249 1.1119 2.0628 2 0 Median 48462000 18124000 30337000 38061000 13416000 24645000 10400000 4708500 5691900 12547 862 12894 33058;33059;33060;33061 51472;51473;51474;51475;51476;51477;51478;51479;51480 51472 9 STAYEDYYYHPPPR DKKRKERQAARQASRSTAYEDYYYHPPPRM RSTAYEDYYYHPPPRMPPPIRGRGRGGGRG R S T P R M 1 1 0 1 0 0 1 0 1 0 0 0 0 0 3 1 1 0 4 0 0 0 14 0 1757.7686 B2R7W4;O43390;B4DMB1;Q0VGD6;Q6MZS5;B4DT28;B4DMD1;Q7Z334 B2R7W4 428 441 HNRNPR;HNRPR;DKFZp686A13234;DKFZp686O0665 Heterogeneous nuclear ribonucleoprotein R yes no 3 1.5446E-05 88.087 2 1.3939 1.387 2.2088 2 Median 1.3939 1.387 2.2088 2 0 Median NaN NaN NaN 0 0 Median 30870000 14181000 16689000 30870000 14181000 16689000 0 0 0 12548 855 12895 33062;33063 51481;51482;51483;51484 51484 4 STCIYGGAPK VQQVAAEYCRACRLKSTCIYGGAPKGPQIR ACRLKSTCIYGGAPKGPQIRDLERGVEICI K S T P K G 1 0 0 0 1 0 0 2 0 1 0 1 0 0 1 1 1 0 1 0 0 0 10 0 1052.4961 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3QRQ7;J3KRZ1;Q59F66;Q92841;B4DZQ7 B4DN41 187 196 DDX5;DKFZp686J01190;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 2 0.0001466 95.815 2 1.495 1.6772 2.7349 2 Median 1.495 1.6772 2.7349 2 0 Median NaN NaN NaN 0 0 Median 140870000 58270000 82599000 140870000 58270000 82599000 0 0 0 12549 1009;1801 12896 33064;33065 51485;51486 51485 2 STDNVLPR PQDTLGVDFDSGEAKSTDNVLPRTVSVRSS FDSGEAKSTDNVLPRTVSVRSSLKKHCNSI K S T P R T 0 1 1 1 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 8 0 900.46649 B5BUA4;Q5FBB7 B5BUA4 180 187 SGOL1 Shugoshin-like 1 yes no 2 0.045297 51.787 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2478500 0 2478500 0 0 0 2478500 0 2478500 12550 1075 12897 33066 51487 51487 1 STEEAFEVFWR NHNMYVAGCTEVEVKSTEEAFEVFWRGQKK VEVKSTEEAFEVFWRGQKKRRIANTHLNRE K S T W R G 1 1 0 0 0 0 3 0 0 0 0 0 0 2 0 1 1 1 0 1 0 0 11 0 1399.6408 H7BYN4;Q02241;H0YME6;H0YKQ5 H7BYN4 272 282 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.00011853 96.331 2 2 1.1685 1.0978 35.952 4 Median 0.77452 0.78048 16.391 2 0 Median 1.6632 1.4207 4.608 2 0 Median 20940000 10867000 10073000 15219000 8504500 6714900 5720300 2362500 3357800 12551 1312 12898 33067;33068;33069;33070 51488;51489;51490;51491 51488 4 STELLIR RPGTVALREIRRYQKSTELLIRKLPFQRLV REIRRYQKSTELLIRKLPFQRLVREIAQDF K S T I R K 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 7 0 830.48617 K7EK07;B2R4P9;P84243;B4E380;Q16695;B2R6Y1;K7EMV3;B4DEB1;K7ES00;Q6NXT2;K7EP01;P68431;Q5TEC6;Q71DI3 K7EK07 58 64 H3F3B;H3F3A;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 7.8161E-19 164.1 23 3 0.77899 0.80907 6.4059 6 Median 0.77899 0.80907 6.4059 6 0 Median NaN NaN NaN 0 0 Median 35442000000 35346000000 95660000 33087000000 32991000000 95660000 2354800000 2354800000 0 12552 827;1661;1865;1828 12899 33071;33072;33073;33074;33075;33076;33077;33078;33079;33080;33081;33082;33083;33084;33085;33086;33087;33088;33089;33090;33091;33092;33093;33094;33095;33096 51492;51493;51494;51495;51496;51497;51498;51499;51500;51501;51502;51503;51504;51505;51506;51507;51508;51509;51510;51511;51512;51513;51514;51515;51516;51517;51518;51519;51520;51521;51522;51523;51524;51525;51526;51527;51528;51529;51530;51531;51532;51533;51534;51535;51536;51537;51538;51539;51540;51541;51542 51499 51 STELLIRK RPGTVALREIRRYQKSTELLIRKLPFQRLV EIRRYQKSTELLIRKLPFQRLVREIAQDFK K S T R K L 0 1 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 8 1 958.58113 K7EK07;B2R4P9;P84243;B4E380;Q16695;B2R6Y1;K7EMV3;B4DEB1;K7ES00;Q6NXT2;K7EP01;P68431;Q5TEC6;Q71DI3 K7EK07 58 65 H3F3B;H3F3A;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 0.011556 85.265 1 0.73797 0.84323 NaN 1 Median 0.73797 0.84323 NaN 1 0 Median NaN NaN NaN 0 0 Median 21352000 11727000 9624900 21352000 11727000 9624900 0 0 0 12553 827;1661;1865;1828 12900 33097 51543;51544 51543 2 STESLQANVQR ARTIGISVDPRRRNKSTESLQANVQRLKEY RRNKSTESLQANVQRLKEYRSKLILFPRKP K S T Q R L 1 1 1 0 0 2 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 11 0 1231.6157 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 106 116 RPL13 60S ribosomal protein L13 yes no 2 3.6752E-112 252.77 2 2 0.85923 0.87115 29.635 4 Median 0.94345 1.1163 0.015571 2 0 Median 0.7689 0.66848 2.4043 2 0 Median 2335400000 1171700000 1163800000 2055800000 1015500000 1040300000 279670000 156170000 123500000 12554 733 12901 33098;33099;33100;33101 51545;51546;51547;51548;51549;51550;51551;51552 51545 8 STETALYR HAELSKLVKKHAAQRSTETALYRKMLGNPS KKHAAQRSTETALYRKMLGNPSRLPAKCPG R S T Y R K 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 2 0 1 0 0 0 8 0 939.46616 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;U3KQ64;A0A0A0MTJ1 B2R8G6 302 309 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 2 0.00044369 107.32 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12555 232 12902 33102;33103 51553;51554 51553 2 STFETEHAGQR YGERITLRPDPLPERSTFETEHAGQRDRYD LPERSTFETEHAGQRDRYDRERDREPYFDR R S T Q R D 1 1 0 0 0 1 2 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 11 0 1261.5687 H0YI23;B4DMQ9;F8VU51;H0YIQ2;Q8NF45;P49750 H0YI23 82 92 YLPM1;FLJ00353 YLP motif-containing protein 1 yes no 2 0.0020963 62.463 1 1.009 1.0538 NaN 1 Median 1.009 1.0538 NaN 1 0 Median NaN NaN NaN 0 0 Median 4848400 2126300 2722100 4848400 2126300 2722100 0 0 0 12556 1007 12903 33104 51555;51556 51556 2 STFSTNYR ______________________________ ______________________________ R S T Y R S 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 2 2 0 1 0 0 0 8 0 974.44576 F8VZY9;B2RA03;A0A024RAY2;P05783 F8VZY9 7 14 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.00095127 124.59 2 2 1.4327 1.432 7.4174 4 Median 1.199 1.4012 8.0282 2 0 Median 1.7148 1.4711 8.77 2 0 Median 686060000 292800000 393260000 623980000 269150000 354840000 62077000 23653000 38424000 12557 316 12904 33105;33106;33107;33108 51557;51558;51559;51560;51561;51562;51563;51564 51558 8 STFVLDEFK AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE FAHLPKSTFVLDEFKRKYSNEDTLSVALPY K S T F K R 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 9 0 1084.5441 Q53YD7;P26641;B4DUP0 Q53YD7 286 294 EEF1G Elongation factor 1-gamma yes no 2 0.00092483 92.439 2 2 1.7899 1.6746 52.545 4 Median 2.3678 2.6434 1.5034 2 0 Median 1.359 1.0641 1.066 2 0 Median 158890000 52126000 106760000 151260000 48824000 102430000 7632000 3301700 4330300 12558 1522 12905 33109;33110;33111;33112 51565;51566;51567;51568;51569;51570;51571 51565 7 STGCDFAVSPK LIELWEGLTVDDVQKSTGCDFAVSPKLMPM DVQKSTGCDFAVSPKLMPMQQIAN______ K S T P K L 1 0 0 1 1 0 0 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 11 0 1167.523 Q6IAV5;A0A024R040;P55809;E9PDW2;B7Z609 Q6IAV5 501 511 OXCT;OXCT1 Succinyl-CoA:3-ketoacid-coenzyme A transferase;Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 2 0.0018798 79.974 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12230000 0 12230000 12230000 0 12230000 0 0 0 12559 35 12906 33113;33114 51572;51573 51572 2 STGEAFVQFASK IVPNGITLTMDYQGRSTGEAFVQFASKEIA QGRSTGEAFVQFASKEIAENALGKHKERIG R S T S K E 2 0 0 0 0 1 1 1 0 0 0 1 0 2 0 2 1 0 0 1 0 0 12 0 1270.6194 Q53F48;A0A024QZK8;P31942 Q53F48 56 67 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 2 7.0317E-20 134.57 3 1 1.7554 1.5922 45.086 2 Median 2.1091 2.19 NaN 1 0 Median 1.4609 1.1576 NaN 1 0 Median 67505000 9612900 57893000 62644000 7833500 54811000 4861400 1779400 3082000 12560 23 12907 33115;33116;33117;33118 51574;51575;51576;51577;51578;51579;51580;51581 51576 8 STGEAFVQFASQEIAEK IVPNGITLPVDFQGRSTGEAFVQFASQEIA GEAFVQFASQEIAEKALKKHKERIGHRYIE R S T E K A 3 0 0 0 0 2 3 1 0 1 0 1 0 2 0 2 1 0 0 1 0 0 17 0 1840.8843 E9PCY7;G8JLB6;P31943;D6RIU0;D6RBM0;H0YB39;E5RGV0;E7EN40;E5RGH4;P55795;B4DFK9 E9PCY7 151 167 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2 3.5659E-34 154.47 2 2 1.3389 1.9553 38.088 4 Linear 1.5961 1.8507 0.444 2 0 Median 1.1242 0.95685 0.42107 2 0 Median 611660000 252970000 358690000 479940000 187980000 291960000 131720000 64990000 66733000 12561 1231;1617 12908 33119;33120;33121;33122 51582;51583;51584;51585;51586;51587;51588;51589;51590 51586 9 STGFETLVVTSEDGITK SLESSSQVEPGTDRKSTGFETLVVTSEDGI GFETLVVTSEDGITKIMFNRPKKKNAINTE K S T T K I 0 0 0 1 0 0 2 2 0 1 1 1 0 1 0 2 4 0 0 2 0 0 17 0 1782.8887 F8WAW4;Q9NYD2;B4DLL3;F1LLU7;C9JB63;Q59E94;Q6IBN4;Q53HG3;Q53GC8;A0A0C4DGA2;A0A024QZU5;O75521 F8WAW4 106 122 ECI2;HCA64;PECI Enoyl-CoA delta isomerase 2, mitochondrial yes no 2 0.0039518 52.101 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7545000 0 7545000 7545000 0 7545000 0 0 0 12562 29 12909 33123;33124 51591;51592;51593 51591 3 STGGAPTFNVTVTK SLLQDGEFSMDLRTKSTGGAPTFNVTVTKT KSTGGAPTFNVTVTKTDKTLVLLMGKEGVH K S T T K T 1 0 1 0 0 0 0 2 0 0 0 1 0 1 1 1 4 0 0 2 0 0 14 0 1378.7092 P07737;K7EJ44 P07737 92 105 PFN1 Profilin-1 yes no 2 2.4473E-06 105.46 2 1 4.7826 5.1961 89.347 3 Plateau 4.8231 5.1084 2.4068 2 0 Median 1.3805 1.0872 NaN 1 0 Median 83745000 13441000 70304000 79715000 11699000 68016000 4030200 1742400 2287800 12563 1453 12910 33125;33126;33127 51594;51595;51596 51594 3 STGILGVCK EELYSLLEDPYPMVRSTGILGVCKITSKYW PYPMVRSTGILGVCKITSKYWEMMPPTILI R S T C K I 0 0 0 0 1 0 0 2 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 933.49535 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 394 402 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.0050688 75.109 1 1 1.9943 1.6449 NaN 1 Median NaN NaN NaN 0 0 Median 1.9943 1.6449 NaN 1 0 Median 19229000 17550000 1678900 16874000 16874000 0 2355600 676760 1678900 12564 1887 12911 33128;33129 51597;51598 51597 2 STGLILDSGATHTTAIPVHDGYVLQQGIVK FLCKTAVLTAFANGRSTGLILDSGATHTTA IPVHDGYVLQQGIVKSPLAGDFITMQCREL R S T V K S 2 0 0 2 0 2 0 4 2 3 3 1 0 0 1 2 4 0 1 3 0 0 30 0 3090.635 Q6FI97;Q53FS0;O96019 Q6FI97 165 194 BAF53A;ACTL6A Actin-like protein 6A yes no 3;4 5.7631E-20 82.089 3 2 0.77048 0.85364 26.228 5 Median 0.7703 0.82725 2.4169 3 0 Median 1.5945 1.3383 4.6696 2 0 Median 259410000 125530000 133880000 161770000 88699000 73067000 97645000 36828000 60818000 12565 1434 12912 33130;33131;33132;33133;33134 51599;51600;51601;51602;51603;51604;51605;51606;51607;51608 51608 10 STGNFLTLTQAIDK RANGHLLLNSEKMSKSTGNFLTLTQAIDKF KSTGNFLTLTQAIDKFSADGMRLALADAGD K S T D K F 1 0 1 1 0 1 0 1 0 1 2 1 0 1 0 1 3 0 0 0 0 0 14 0 1507.7882 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NVP8 B4E266 674 687 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.011156 44.367 1 1 0.85626 0.94041 NaN 1 Median 0.85626 0.94041 NaN 1 0 Median NaN NaN NaN 0 0 Median 45112000 19359000 25753000 41722000 19359000 22363000 3390500 0 3390500 12566 883 12913 33135;33136 51609;51610 51609 2 STGTETGSNINVNSELNPSTGNR VNKPLSATGRKPYVRSTGTETGSNINVNSE NINVNSELNPSTGNRSREQSSEAAETGVSE R S T N R S 0 1 5 0 0 0 2 3 0 1 1 0 0 0 1 4 4 0 0 1 0 0 23 0 2348.084 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1159 1181 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 2.5013E-07 65.467 2 0.66648 0.67165 NaN 1 Median 0.66648 0.67165 NaN 1 0 Median NaN NaN NaN 0 0 Median 16044000 12665000 3379000 16044000 12665000 3379000 0 0 0 12567 1270 12914 33137;33138 51611;51612;51613;51614;51615 51615 5 STIGAYFLK CHQGKLSCSTWNYQKSTIGAYFLKPKELKK TWNYQKSTIGAYFLKPKELKKDDITATAVD K S T L K P 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 0 9 0 998.54368 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 422 430 WDR36 WD repeat-containing protein 36 yes no 2 0.0025185 74.127 2 2 1.1027 1.0685 1.9662 4 Median 0.9083 1.0529 2.084 2 0 Median 1.3143 1.0782 1.2784 2 0 Median 553100000 290030000 263070000 490300000 262470000 227820000 62798000 27555000 35244000 12568 486 12915 33139;33140;33141;33142 51616;51617;51618;51619;51620;51621;51622;51623;51624 51619 9 STISTELALALR RHIILVLSGKGGVGKSTISTELALALRHAG VGKSTISTELALALRHAGKKVGILDVDLCG K S T L R H 2 1 0 0 0 0 1 0 0 1 3 0 0 0 0 2 2 0 0 0 0 0 12 0 1273.7242 Q2YS46;B2RDN3;Q9Y5Y2;H3BNF0;H3BNS4;H3BRK5;H3BMW1 Q2YS46 23 34 NUBP1;NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 5.6573E-06 132.01 2 1.4028 1.4391 2.7073 2 Median 1.4028 1.4391 2.7073 2 0 Median NaN NaN NaN 0 0 Median 21527000 9645500 11881000 21527000 9645500 11881000 0 0 0 12569 888 12916 33143;33144 51625;51626;51627;51628;51629 51629 5 STITSREIQTAVR RIAGEASRLAHYNKRSTITSREIQTAVRLL KRSTITSREIQTAVRLLLPGELAKHAVSEG R S T V R L 1 2 0 0 0 1 1 0 0 2 0 0 0 0 0 2 3 0 0 1 0 0 13 1 1460.7947 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A0A024RCL8;B4DR52;P57053;O60814;Q0D2M2;Q16778;P33778;P23527;A0A024RCJ2;P06899 B2R4S9 88 100 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J no no 3 0.02739 39.73 1 1.0938 1.2005 NaN 1 Median 1.0938 1.2005 NaN 1 0 Median NaN NaN NaN 0 0 Median 20414000 8015000 12399000 20414000 8015000 12399000 0 0 0 12570 34;1513 12917 33145 51630 51630 0 STLASVNIQALPDK VARRVYLTTQLKQKKSTLASVNIQALPDKG KSTLASVNIQALPDKGQKLIKQIQELEEVL K S T D K G 2 0 1 1 0 1 0 0 0 1 2 1 0 0 1 2 1 0 0 1 0 0 14 0 1455.7933 A0A024R0F1;Q9UNY4 A0A024R0F1 426 439 TTF2 Transcription termination factor 2 yes no 2 0.00013865 78.692 2 2 1.6293 1.2814 47.263 3 Median 0.59832 0.58597 NaN 1 0 Median 1.6525 1.3258 4.8156 2 0 Median 50833000 21788000 29044000 31241000 14403000 16838000 19592000 7385700 12206000 12571 44 12918 33146;33147;33148;33149 51631;51632;51633;51634 51633 4 STLDIVLANK YINPHNGKHSPMVAKSTLDIVLANKDRLNS PMVAKSTLDIVLANKDRLNSAIIYDRDFSY K S T N K D 1 0 1 1 0 0 0 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1072.6128 B4DNN4;Q53GZ5;P23921;B4E0I8 B4DNN4 89 98 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.0026779 67.993 1 1 3.5888 3.8387 NaN 1 Median 3.5888 3.8387 NaN 1 0 Median NaN NaN NaN 0 0 Median 21142000 4274500 16868000 21142000 4274500 16868000 0 0 0 12572 1014 12919 33150;33151 51635;51636 51635 2 STLENQNWR DVYFRKTKAATILTKSTLENQNWRATTLPT ATILTKSTLENQNWRATTLPTDFNYNVDTL K S T W R A 0 1 2 0 0 1 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 9 0 1146.5418 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 496 504 NCAPH Condensin complex subunit 2 yes no 2 1.0585E-07 138.9 2 2 1.074 1.0743 32.959 4 Median 0.70853 0.80215 4.2817 2 0 Median 1.636 1.4168 2.1096 2 0 Median 195660000 92779000 102880000 116690000 61665000 55024000 78968000 31114000 47854000 12573 740 12920 33152;33153;33154;33155 51637;51638;51639;51640;51641;51642;51643 51639 7 STLEPVEK ITRARFEELCSDLFRSTLEPVEKALRDAKL LCSDLFRSTLEPVEKALRDAKLDKAQIHDL R S T E K A 0 0 0 0 0 0 2 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 8 0 901.47566 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5;P48741 A8K5I0 312 319 HEL-S-103;HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2 0.0036527 96.111 2 0.78708 0.89309 3.1479 2 Median 0.78708 0.89309 3.1479 2 0 Median NaN NaN NaN 0 0 Median 281790000 161510000 120280000 281790000 161510000 120280000 0 0 0 12574 533;845 12921 33156;33157 51644;51645;51646;51647 51647 4 STLINSLFLTDLYPER FEFTLMVVGESGLGKSTLINSLFLTDLYPE TLINSLFLTDLYPERVIPGA__________ K S T E R V 0 1 1 1 0 0 1 0 0 1 4 0 0 1 1 2 2 0 1 0 0 0 16 0 1880.9884 A0A1B0GXJ2;C9JFT1;F8WB65;B5MD47;C9JZI2;C9IY94;C9IZU3;C9JQJ4;C9J938;C9JB25;C9J2Q4;B5MCX3;Q15019 A0A1B0GXJ2 51 66 SEPT2 Septin-2 yes no 2 0.00099116 67.456 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12575 636 12922 33158 51648 51648 1 STLIQCLIR PPIVVVVMGPPKVGKSTLIQCLIRNFTRQK PPKVGKSTLIQCLIRNFTRQKLTEIRGPVT K S T I R N 0 1 0 0 1 1 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1102.6169 Q14692 Q14692 96 104 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.00087082 93.195 1 2 1.2164 1.0367 4.915 3 Median 0.87888 0.96009 NaN 1 0 Median 1.2386 1.0444 1.0401 2 0 Median 53210000 28495000 24715000 37681000 21830000 15851000 15529000 6665100 8863800 12576 1742 12923 33159;33160;33161 51649;51650;51651;51652;51653;51654 51650 6 STLLLLLTGK MDSRICIVGPNGVGKSTLLLLLTGKLTPTH NGVGKSTLLLLLTGKLTPTHGEMRKNHRLK K S T G K L 0 0 0 0 0 0 0 1 0 0 5 1 0 0 0 1 2 0 0 0 0 0 10 0 1057.6747 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 665 674 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.4212E-05 102.07 2 2 0.67364 0.61897 32.295 4 Median 0.77571 0.82809 5.4837 2 0 Median 0.60405 0.47473 1.842 2 0 Median 63655000 34541000 29114000 55470000 29726000 25744000 8185100 4815000 3370100 12577 1926 12924 33162;33163;33164;33165 51655;51656;51657;51658;51659;51660;51661;51662;51663 51657 9 STLLLNLDFGEPPPKK ______________________________ TLLLNLDFGEPPPKKALEGNAKHRNFVKKR M S T K K A 0 0 1 1 0 0 1 1 0 0 4 2 0 1 3 1 1 0 0 0 0 0 16 1 1767.9771 Q9H9L3 Q9H9L3 2 17 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 2 6.0428E-06 91.961 2 1.6 1.8002 30.171 2 Median 1.6 1.8002 30.171 2 0 Median NaN NaN NaN 0 0 Median 10217000 4099700 6117700 10217000 4099700 6117700 0 0 0 12578 2046 12925 33166;33167 51664;51665 51665 2 STLQQLLQLPQGEEEIPEQIANTETTEDVK LDPEEEWEAMLPELKSTLQQLLQLPQGEEE IPEQIANTETTEDVKGRIYQLLAKASYKKA K S T V K G 1 0 1 1 0 5 6 1 0 2 4 1 0 0 2 1 4 0 0 1 0 0 30 0 3380.6835 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 488 517 NCAPD2 Condensin complex subunit 1 yes no 3 6.2621E-05 35.215 1 0.81606 0.84245 NaN 1 Median 0.81606 0.84245 NaN 1 0 Median NaN NaN NaN 0 0 Median 29052000 17085000 11967000 29052000 17085000 11967000 0 0 0 12579 908 12926 33168 51666;51667 51667 2 STLSNQLLGR RVLRVVLLGAPNAGKSTLSNQLLGRKVFPV PNAGKSTLSNQLLGRKVFPVSRKVHTTRCQ K S T G R K 0 1 1 0 0 1 0 1 0 0 3 0 0 0 0 2 1 0 0 0 0 0 10 0 1087.5986 O75616;J3QSB2;J3QRV9;J3QT61 O75616 127 136 ERAL1 GTPase Era, mitochondrial yes no 2 4.0628E-08 117.72 2 1.3771 1.39 10.991 2 Median 1.3771 1.39 10.991 2 0 Median NaN NaN NaN 0 0 Median 32531000 14664000 17867000 32531000 14664000 17867000 0 0 0 12580 1410 12927 33169;33170 51668;51669;51670;51671 51670 4 STLTDSLVCK NIRNMSVIAHVDHGKSTLTDSLVCKAGIIA VDHGKSTLTDSLVCKAGIIASARAGETRFT K S T C K A 0 0 0 1 1 0 0 0 0 0 2 1 0 0 0 2 2 0 0 1 0 0 10 0 1122.5591 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 33 42 EEF2 Elongation factor 2 yes no 2 0.00089136 88.948 1 2 2.2694 1.8398 6.1739 2 Median NaN NaN NaN 0 0 Median 2.2694 1.8398 6.1739 2 0 Median 63100000 3986900 59113000 49701000 0 49701000 13399000 3986900 9412500 12581 1478 12928 33171;33172;33173 51672;51673;51674;51675 51672 4 STLYVSPHPDAFPSLR ______________________________ TLYVSPHPDAFPSLRALIAARYGEAGEGPG M S T L R A 1 1 0 1 0 0 0 0 1 0 2 0 0 1 3 3 1 0 1 1 0 0 16 0 1785.905 A0A024RCN6;P26640;B4DT32;A0A140T954;A2ABF4;A0A0G2JJT9 A0A024RCN6 2 17 VARS Valine--tRNA ligase yes no 2 0.00023619 76.073 1 2 0.63672 0.52191 5.022 2 Median NaN NaN NaN 0 0 Median 0.63672 0.52191 5.022 2 0 Median 34746000 14947000 19798000 10561000 0 10561000 24185000 14947000 9237600 12582 363 12929 33174;33175;33176 51676;51677;51678;51679;51680;51681 51681 6 STMQELNSR GAGGGDGGILTANEKSTMQELNSRLASYLD LTANEKSTMQELNSRLASYLDKVQALEEAN K S T S R L 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 2 1 0 0 0 0 0 9 0 1064.4921 CON__P35527;P35527 CON__P35527 155 163 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.00015154 95.502 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32197000 32197000 0 19281000 19281000 0 12916000 12916000 0 + 12583 1165 12930;12931 33177;33178;33179 51682;51683;51684 51682 883 3 STNGDTFLGGEDFDQALLR DISILEIQKGVFEVKSTNGDTFLGGEDFDQ DTFLGGEDFDQALLRHIVKEFKRETGVDLT K S T L R H 1 1 1 3 0 1 1 3 0 0 3 0 0 2 0 1 2 0 0 0 0 0 19 0 2054.9545 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;Q2F839 B7Z4V2 252 270 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 8.9505E-06 74.769 2 2 1.5893 1.4834 48.718 4 Median 2.0981 2.2958 4.6764 2 0 Median 1.194 0.98862 0.30121 2 0 Median 109500000 36044000 73459000 89713000 27104000 62609000 19790000 8940200 10850000 12584 1092 12932 33180;33181;33182;33183 51685;51686;51687;51688;51689;51690;51691;51692 51687 8 STPAITLESPDIK PVWFLYSLLMKLFQRSTPAITLESPDIKYP QRSTPAITLESPDIKYPLRLIDREIISHDT R S T I K Y 1 0 0 1 0 0 1 0 0 2 1 1 0 0 2 2 2 0 0 0 0 0 13 0 1370.7293 A0A024R4X0;P00387;B1AHF3 A0A024R4X0 20 32 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 2 0.033607 43.544 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12585 164 12933 33184 51693 51693 1 STPGSGSGPAHGPDPAHGPASCS PATLVAPASVITIVKSTPGSGSGPAHGPDP PAHGPDPAHGPASCS_______________ K S T C S - 3 0 0 1 1 0 0 5 2 0 0 0 0 0 5 5 1 0 0 0 0 0 23 0 2086.8763 Q9ULX9 Q9ULX9 142 164 MAFF Transcription factor MafF yes yes 2;3 3.7476E-32 94.057 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62516000 0 0 49604000 0 0 12912000 0 0 12586 2112 12934 33185;33186;33187;33188;33189;33190 51694;51695;51696;51697;51698;51699 51694 6 STPLASPSPSPGR FSEFTPQSILRSTLRSTPLASPSPSPGRSP LRSTPLASPSPSPGRSPQRLKETRISFVEE R S T G R S 1 1 0 0 0 0 0 1 0 0 1 0 0 0 4 4 1 0 0 0 0 0 13 0 1252.6412 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1209 1221 AHCTF1 Protein ELYS yes no 2 0.0003075 65.278 2 1 2.7501 2.5555 34.473 2 Median 1.9905 2.0027 NaN 1 0 Median 3.7996 3.2609 NaN 1 0 Median 23686000 7610500 16075000 17395000 6274900 11120000 6290700 1335600 4955000 12587 1945 12935 33191;33192;33193 51700;51701;51702;51703;51704 51701 5 STPLEENVVDREQIDFLAAR GTPDHGDPRTPGPPRSTPLEENVVDREQID ENVVDREQIDFLAARQQFLSLEQANKGAPH R S T A R Q 2 2 1 2 0 1 3 0 0 1 2 0 0 1 1 1 1 0 0 2 0 0 20 1 2301.1601 Q8IVT2 Q8IVT2 178 197 MISP Mitotic interactor and substrate of PLK1 yes yes 3 2.3123E-05 34.689 2 2 1.052 1.1132 24.519 3 Median 0.98564 1.0637 6.4331 2 0 Median 1.8905 1.6146 NaN 1 0 Median 37306000 13043000 24264000 26551000 10875000 15675000 10756000 2167300 8588200 12588 1892 12936 33194;33195;33196;33197 51705;51706;51707;51708;51709;51710;51711;51712 51709 8 STPVTVVLPDTK TDILFTEQERGVGIKSTPVTVVLPDTKGKS GIKSTPVTVVLPDTKGKSYLFNIMDTPGHV K S T T K G 0 0 0 1 0 0 0 0 0 0 1 1 0 0 2 1 3 0 0 3 0 0 12 0 1255.7024 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 134 145 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.00020274 79.311 2 1.0095 1.1357 8.0893 2 Median 1.0095 1.1357 8.0893 2 0 Median NaN NaN NaN 0 0 Median 159240000 77629000 81614000 159240000 77629000 81614000 0 0 0 12589 794 12937 33198;33199 51713;51714;51715;51716 51716 4 STQAATQVVLNVPETR GAAGRSLYFGENRLRSTQAATQVVLNVPET TQAATQVVLNVPETRVTCLESGLRVASEDS R S T T R V 2 1 1 0 0 2 1 0 0 0 1 0 0 0 1 1 3 0 0 3 0 0 16 0 1712.9057 F8WEA6;F8WBE1;F8WAZ6;Q96CP5;B3KM34;A8K1E9;G3V0E4;O75439 F8WEA6 44 59 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 3.1792E-06 83.087 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3447500 0 3447500 3447500 0 3447500 0 0 0 12590 703 12938 33200 51717 51717 1 STQGVTLTDLQEAEK SQRKARSRQARQSRRSTQGVTLTDLQEAEK STQGVTLTDLQEAEKTIGRSRSTRTREQEN R S T E K T 1 0 0 1 0 2 2 1 0 0 2 1 0 0 0 1 3 0 0 1 0 0 15 0 1618.805 F8VZN8;A0A024RBF1;B2RAH5;O14974;H0YIS4;H0YHI8 F8VZN8 636 650 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 2 0.012817 50.207 2 1.2204 1.2551 5.1218 2 Median 1.2204 1.2551 5.1218 2 0 Median NaN NaN NaN 0 0 Median 24571000 12431000 12140000 24571000 12431000 12140000 0 0 0 12591 336 12939 33201;33202 51718;51719 51718 1 STQQDIYAGSVQPILR QETLKYQFDAFYGERSTQQDIYAGSVQPIL TQQDIYAGSVQPILRHLLEGQNASVLAYGP R S T L R H 1 1 0 1 0 3 0 1 0 2 1 0 0 0 1 2 1 0 1 1 0 0 16 0 1774.9214 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 98 113 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 5.9705E-13 124.12 2 2 1.1024 1.0729 23.041 4 Median 0.79255 0.8699 4.7323 2 0 Median 1.5061 1.2926 1.4132 2 0 Median 156510000 79032000 77479000 99987000 56103000 43883000 56524000 22928000 33596000 12592 1745 12940 33203;33204;33205;33206 51720;51721;51722;51723;51724;51725;51726;51727;51728 51724 9 STQTTNDGVCQSMCHDK QTKKLSASSPRMLHRSTQTTNDGVCQSMCH QTTNDGVCQSMCHDKYTKIFNDFKDRMKSD R S T D K Y 0 0 1 2 2 2 0 1 1 0 0 1 1 0 0 2 3 0 0 1 0 0 17 0 1967.7772 Q15326;E7ENI9;J3QKD2;Q5BJG6;B7Z3W2;B0QZE2;B7Z2J6;A0A0A0MRY2;Q5UGI2;B7Z3Z1 Q15326 454 470 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 0.032184 18.455 1 2.7594 2.4326 NaN 1 Median NaN NaN NaN 0 0 Median 2.7594 2.4326 NaN 1 0 Median 1216300 284180 932120 0 0 0 1216300 284180 932120 12593 1758 12941 33207 51729 51729 1 STSLETQDDDNIR CSQDCLIRIWKLYIKSTSLETQDDDNIRLK IKSTSLETQDDDNIRLKENTFTIENESVKI K S T I R L 0 1 1 3 0 1 1 0 0 1 1 0 0 0 0 2 2 0 0 0 0 0 13 0 1492.6641 Q6IA86 Q6IA86 242 254 ELP2 Elongator complex protein 2 yes yes 2 2.0823E-09 115.57 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11687000 0 11687000 11687000 0 11687000 0 0 0 12594 1842 12942 33208;33209;33210;33211 51730;51731;51732;51733 51730 4 STSPPNHAEAIVK EEGTEAVGLAFESTRSTSPPNHAEAIVKTL TRSTSPPNHAEAIVKTLQELQKLHVSEQNA R S T V K T 2 0 1 0 0 0 1 0 1 1 0 1 0 0 2 2 1 0 0 1 0 0 13 0 1349.6939 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 312 324 yes yes 2 0.014534 50.786 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3893900 3893900 0 3893900 3893900 0 0 0 0 + 12595 1146 12943 33212 51734 51734 1 STSQTFIYK RYTASGCEVIAVNTRSTSQTFIYKCDAVLC IAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ R S T Y K C 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 2 2 0 1 0 0 0 9 0 1073.5393 A8K2R3;O60341;R4GMP9;R4GMQ1 A8K2R3 487 495 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.0028606 73.26 1 0.68977 0.69369 NaN 1 Median 0.68977 0.69369 NaN 1 0 Median NaN NaN NaN 0 0 Median 13568000 8092200 5476000 13568000 8092200 5476000 0 0 0 12596 711 12944 33213 51735 51735 1 STSSFSCLSR GFSSGSAVVSGGSRRSTSSFSCLSRHGGGG GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS R S T S R H 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 5 1 0 0 0 0 0 10 0 1130.5026 CON__P35908;P35908 CON__P35908 36 45 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 0.0020262 82.749 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46105000 46105000 0 46105000 46105000 0 0 0 0 + 12597 1166 12945 33214 51736 51736 1 STSTSEPTTGCSLK RKTHTCQVIIENVSKSTSTSEPTTGCSLK_ KSTSTSEPTTGCSLK_______________ K S T L K - 0 0 0 0 1 0 1 1 0 0 1 1 0 0 1 4 4 0 0 0 0 0 14 0 1454.6559 Q8ND82 Q8ND82 724 737 ZNF280C Zinc finger protein 280C yes yes 2 2.4053E-09 116.55 2 2 1.2083 1.086 32.818 4 Median 0.77978 0.79801 8.4314 2 0 Median 1.7647 1.4 0.77509 2 0 Median 38523000 19262000 19261000 29920000 16344000 13575000 8603400 2917300 5686100 12598 1924 12946 33215;33216;33217;33218 51737;51738;51739;51740;51741 51738 5 STTELDDYSTNK EASSGFLPGDRNKSRSTTELDDYSTNKNGN KSRSTTELDDYSTNKNGNNKYLDQIGNMTS R S T N K N 0 0 1 2 0 0 1 0 0 0 1 1 0 0 0 2 3 0 1 0 0 0 12 0 1372.5994 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2 A0A1P7ZIM8 1037 1048 LMO7 LIM domain only protein 7 yes no 2 0.0018377 73.499 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1468900 0 1468900 0 0 0 1468900 0 1468900 12599 640 12947 33219 51742 51742 1 STTSTIESFAAQEK MKLVEQLKEERELLRSTTSTIESFAAQEKQ RSTTSTIESFAAQEKQMEVCEVCGAFLIVG R S T E K Q 2 0 0 0 0 1 2 0 0 1 0 1 0 1 0 3 3 0 0 0 0 0 14 0 1498.7151 Q6PKC2;Q86Y74;B4DJ96;A8K3C5;J3KPP4;O95232 Q6PKC2 174 187 CROP;LUC7L3 Luc7-like protein 3 yes no 2 0.013994 35.645 1 0.43974 0.34246 NaN 1 Median NaN NaN NaN 0 0 Median 0.43974 0.34246 NaN 1 0 Median 3341500 2143200 1198300 0 0 0 3341500 2143200 1198300 12600 722 12948 33220 51743 51743 1 STTTGHLIYK THINIVVIGHVDSGKSTTTGHLIYKFGGID VDSGKSTTTGHLIYKFGGIDKRTIEKFEKE K S T Y K F 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 3 0 1 0 0 0 10 0 1119.5924 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;Q53GE9;Q53G85;Q53GA1;A0A087WVQ9;B4DNE0;A0A087WV01;Q9H2I7;Q05639;A6PW80;Q5JR01;Q6NS35;Q6NSH7 Q6IPT9 21 30 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 2;3 4.7487E-16 151.97 3 3 2.5573 3.201 43.684 6 Linear 2.431 2.9248 7.4813 3 0 Plateau 1.5479 1.3367 7.0928 3 0 Median 6787400000 2051400000 4736000000 6370100000 1889300000 4480800000 417290000 162120000 255170000 12601 1658 12949 33221;33222;33223;33224;33225;33226 51744;51745;51746;51747;51748;51749;51750;51751;51752;51753;51754;51755;51756 51748 13 STTYSSLHASENR NECHGATCLPLSVRRSTTYSSLHASENREL RRSTTYSSLHASENRELLNVHSANVSKVSF R S T N R E 1 1 1 0 0 0 1 0 1 0 1 0 0 0 0 4 2 0 1 0 0 0 13 0 1451.6641 Q8IZT6;B3KWI2 Q8IZT6 244 256 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 0.00061931 81.017 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4321900 0 4321900 4321900 0 4321900 0 0 0 12602 1902 12950 33227 51757 51757 1 STVAESVSQQILR RDHLRVNLKFLTRTRSTVAESVSQQILRQN TRSTVAESVSQQILRQNRGRKACDRPVAKT R S T L R Q 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 3 1 0 0 2 0 0 13 0 1416.7573 A0A024R1T1;Q86WX3 A0A024R1T1 84 96 RPS19BP1 Active regulator of SIRT1 yes no 2 1.5168E-24 162.36 2 2 1.2895 1.2487 10.801 3 Median 1.1076 1.2487 NaN 1 0 Median 1.4192 1.1727 14.39 2 0 Median 112780000 37168000 75616000 79948000 23414000 56534000 32836000 13754000 19082000 12603 87 12951 33228;33229;33230;33231 51758;51759;51760;51761;51762;51763 51761 6 STVALTAAR AVLKFIEGISEKTLRSTVALTAARGRGKSA SEKTLRSTVALTAARGRGKSAALGLAIAGA R S T A R G 3 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 9 0 888.50288 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 278 286 NAT10 N-acetyltransferase 10 no no 2 1.4821E-11 151.56 2 2 1.1168 1.1015 5.3208 4 Median 0.92663 1.0694 2.8415 2 0 Median 1.3389 1.1506 4.8205 2 0 Median 505620000 265710000 239900000 438830000 237930000 200900000 66787000 27787000 39000000 12604 2023;1687 12952 33232;33233;33234;33235 51764;51765;51766;51767;51768;51769;51770;51771;51772 51766 9 STVENFGQLGR QQVLLAAKQVLLYLRSTVENFGQLGRSVGP LYLRSTVENFGQLGRSVGPPLLQLFLDLLR R S T G R S 0 1 1 0 0 1 1 2 0 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1206.5993 O60287 O60287 937 947 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 9.085E-08 105.78 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17956000 0 17956000 17956000 0 17956000 0 0 0 12605 1392 12953 33236;33237 51773;51774 51773 2 STVLTPMFVETQASQGTLQTR CEFQEYTIDSDWRFRSTVLTPMFVETQASQ MFVETQASQGTLQTRTQEGSLSARWPVAGQ R S T T R T 1 1 0 0 0 3 1 1 0 0 2 0 1 1 1 2 5 0 0 2 0 0 21 0 2294.1576 P78527 P78527 2599 2619 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 9.3311E-22 114.64 4 3 0.78845 0.80142 62.806 7 Median 0.81714 0.83441 2.2167 4 0 Median 0.28449 0.24448 16.26 3 0 Median 95421000 52754000 42667000 77551000 39354000 38197000 17870000 13399000 4470400 12606 1665 12954;12955 33238;33239;33240;33241;33242;33243;33244 51775;51776;51777;51778;51779;51780;51781;51782;51783;51784;51785 51782 1463 11 STVVPVPYEK VEDYFCFCYGKALGKSTVVPVPYEKMLRDQ KALGKSTVVPVPYEKMLRDQSAVVVQGLPE K S T E K M 0 0 0 0 0 0 1 0 0 0 0 1 0 0 2 1 1 0 1 3 0 0 10 0 1117.6019 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9;A0A0A0VEB4 X5D2J9 131 140 GTF2I;GTF2I-RARA General transcription factor II-I yes no 2 0.0020391 70.908 1 0.89887 0.9684 NaN 1 Median 0.89887 0.9684 NaN 1 0 Median NaN NaN NaN 0 0 Median 37939000 19322000 18617000 37939000 19322000 18617000 0 0 0 12607 789 12956 33245 51786;51787 51787 2 STYEQVDLIGK TCPHWVFNVAKKYMKSTYEQVDLIGKKTQK KYMKSTYEQVDLIGKKTQKTAITVEHLAIK K S T G K K 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 1 1 0 1 1 0 0 11 0 1251.6347 Q9NR30 Q9NR30 392 402 DDX21 Nucleolar RNA helicase 2 yes yes 2 3.1989E-05 100.25 2 2 1.1468 1.3564 24.127 4 Linear 1.1399 1.3331 2.7866 2 0 Median 1.0598 0.8787 1.0836 2 0 Median 673540000 311300000 362240000 591880000 273100000 318780000 81661000 38202000 43459000 12608 2065 12957 33246;33247;33248;33249 51788;51789;51790;51791;51792;51793 51793 6 STYEQVDLIGKK TCPHWVFNVAKKYMKSTYEQVDLIGKKTQK YMKSTYEQVDLIGKKTQKTAITVEHLAIKC K S T K K T 0 0 0 1 0 1 1 1 0 1 1 2 0 0 0 1 1 0 1 1 0 0 12 1 1379.7296 Q9NR30 Q9NR30 392 403 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 7.3685E-19 150.1 3 3 1.2185 1.0405 3.4886 3 Median NaN NaN NaN 0 0 Median 1.2185 1.0405 3.4886 3 0 Median 60361000 22790000 37571000 9670700 0 9670700 50690000 22790000 27901000 12609 2065 12958 33250;33251;33252;33253;33254;33255 51794;51795;51796;51797;51798;51799;51800;51801 51800 8 SVAEGLSGSLVQEPFQLATEK TVISQEPFVPKKEKKSVAEGLSGSLVQEPF SGSLVQEPFQLATEKRAKERQELEKRMAEV K S V E K R 2 0 0 0 0 2 3 2 0 0 3 1 0 1 1 3 1 0 0 2 0 0 21 0 2189.1216 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 646 666 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 4.118E-101 203.32 2 2 0.99192 0.97413 15.946 4 Median 0.76129 0.85424 4.5957 2 0 Median 1.3023 1.1159 5.2437 2 0 Median 351660000 167310000 184340000 152700000 82329000 70376000 198950000 84986000 113970000 12610 1837 12959 33256;33257;33258;33259 51802;51803;51804;51805;51806;51807;51808 51803 7 SVAEHPLSR PVYAAASLAVSWVLRSVAEHPLSRAEAAGL VSWVLRSVAEHPLSRAEAAGLIGWLKSHIL R S V S R A 1 1 0 0 0 0 1 0 1 0 1 0 0 0 1 2 0 0 0 1 0 0 9 0 994.51959 O60287 O60287 2107 2115 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0077672 61.691 1 0.93218 0.96487 NaN 1 Median 0.93218 0.96487 NaN 1 0 Median NaN NaN NaN 0 0 Median 23197000 12061000 11136000 23197000 12061000 11136000 0 0 0 12611 1392 12960 33260 51809 51809 1 SVAHGQAPEMPLVK YFADVSPLRATSPSKSVAHGQAPEMPLVKK KSVAHGQAPEMPLVKKKKKKKKGVSTLCEE K S V V K K 2 0 0 0 0 1 1 1 1 0 1 1 1 0 2 1 0 0 0 2 0 0 14 0 1462.7602 Q1ED39;H3BMC9 Q1ED39 52 65 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 0.00095468 63.473 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5592500 0 5592500 5592500 0 5592500 0 0 0 12612 1775 12961 33261 51810 51810 1646 1 SVALYDCR HPFEAQTLISGSYDKSVALYDCRSPDESHR ISGSYDKSVALYDCRSPDESHRMWRFSGQI K S V C R S 1 1 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 8 0 982.45422 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 323 330 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.0087497 77.282 2 2 1.004 0.95078 14.128 4 Median 0.79477 0.84592 1.7141 2 0 Median 1.2391 1.0779 2.9324 2 0 Median 78653000 42951000 35702000 68675000 38434000 30241000 9977800 4516600 5461200 12613 339 12962 33262;33263;33264;33265 51811;51812;51813;51814;51815;51816;51817;51818 51814 8 SVANVIQQAGCPVPEYIK KAITFFTEDDKPLLRSVANVIQQAGCPVPE NVIQQAGCPVPEYIKGFQKLLSKQKKKMIK R S V I K G 2 0 1 0 1 2 1 1 0 2 0 1 0 0 2 1 0 0 1 3 0 0 18 0 1972.0088 Q9Y2R4;B3KM65;A0A087X121 Q9Y2R4 526 543 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 3.3994E-05 63.76 2 2 1.0152 0.85609 7.5182 4 Median 0.90535 0.91638 10.797 2 0 Median 1.0568 0.85355 1.5933 2 0 Median 30846000 15079000 15766000 15224000 7801900 7422000 15622000 7277600 8344400 12614 2126 12963 33266;33267;33268;33269 51819;51820;51821;51822;51823;51824;51825;51826;51827;51828;51829 51826 11 SVASDVPEELDFLVPK PERKRKKTEDSSSGKSVASDVPEELDFLVP VASDVPEELDFLVPKAGFFCPICSLFYSGE K S V P K A 1 0 0 2 0 0 2 0 0 0 2 1 0 1 2 2 0 0 0 3 0 0 16 0 1743.8931 Q14966;A0A096LPK8;Q57Z90;A0A096LNS4 Q14966 1910 1925 ZNF638;NP220 Zinc finger protein 638 yes no 2 0.00015519 72.006 2 0.94031 0.95403 7.7322 2 Median 0.94031 0.95403 7.7322 2 0 Median NaN NaN NaN 0 0 Median 17443000 8440500 9002300 17443000 8440500 9002300 0 0 0 12615 1746 12964 33270;33271 51830;51831;51832 51830 3 SVDFHFR GIGQPVKKSVSQVTKSVDFHFRTDERIKQH KSVSQVTKSVDFHFRTDERIKQHPKNQEEY K S V F R T 0 1 0 1 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 1 0 0 7 0 906.4348 Q643R0;Q9ULW0;B3KM90 Q643R0 257 263 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.026656 75.311 1 1 0.8975 0.85639 24.483 2 Median 0.64895 0.72026 NaN 1 0 Median 1.2413 1.0183 NaN 1 0 Median 81590000 45827000 35763000 69257000 40659000 28598000 12333000 5167500 7165300 12616 1837 12965 33272;33273 51833;51834;51835 51834 3 SVDVILDDDLVDK IQEMPEKAPAGQLPRSVDVILDDDLVDKAK PRSVDVILDDDLVDKAKPGDRVQVVGTYRC R S V D K A 0 0 0 5 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 3 0 0 13 0 1444.7297 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 216 228 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.0024841 53.569 1 0.96789 0.76699 NaN 1 Median NaN NaN NaN 0 0 Median 0.96789 0.76699 NaN 1 0 Median 4212200 1629300 2582900 0 0 0 4212200 1629300 2582900 12617 568 12966 33274 51836 51836 1 SVEDRFDQQK TRLTYEIEDEKRRRKSVEDRFDQQKNDYDQ KRRRKSVEDRFDQQKNDYDQLQKARQCEKE K S V Q K N 0 1 0 2 0 2 1 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 10 1 1250.5891 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 1127 1136 DSP;DSP variant protein Desmoplakin yes no 2 0.0034376 83.647 1 0.73375 0.78988 NaN 1 Median 0.73375 0.78988 NaN 1 0 Median NaN NaN NaN 0 0 Median 11412000 5706400 5706000 11412000 5706400 5706000 0 0 0 12618 1486 12967 33275 51837 51837 1 SVEEEEQVWR SILAETEGMLRDLQKSVEEEEQVWRAKVGA RDLQKSVEEEEQVWRAKVGAAEEELQKSRV K S V W R A 0 1 0 0 0 1 4 0 0 0 0 0 0 0 0 1 0 1 0 2 0 0 10 0 1289.5888 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5;B3KSG1;A0A087WU26 A0A0A0MRV0 1148 1157 RRBP1 Ribosome-binding protein 1 yes no 2 0.0029629 66.692 1 1.0683 1.1504 NaN 1 Median 1.0683 1.1504 NaN 1 0 Median NaN NaN NaN 0 0 Median 3134500 1813300 1321100 3134500 1813300 1321100 0 0 0 12619 471 12968 33276 51838 51838 1 SVEELLEAELLK EELKKVIHEKDGKIKSVEELLEAELLKVAN KIKSVEELLEAELLKVANKEKTVQDLKQEI K S V L K V 1 0 0 0 0 0 4 0 0 0 4 1 0 0 0 1 0 0 0 1 0 0 12 0 1371.7497 A0A024R663;Q86UP2;G3V4Y7;H0YJZ8;G3V5G2 A0A024R663 812 823 KTN1 Kinectin yes no 2 0.047262 33.088 1 0.49784 0.40778 NaN 1 Median NaN NaN NaN 0 0 Median 0.49784 0.40778 NaN 1 0 Median 5409400 3172000 2237300 0 0 0 5409400 3172000 2237300 12620 197 12969 33277 51839 51839 1 SVEEVASEIQPFLR LIDKTTLDKLLKGKKSVEEVASEIQPFLRG KSVEEVASEIQPFLRGAGSIAGASASPKEK K S V L R G 1 1 0 0 0 1 3 0 0 1 1 0 0 1 1 2 0 0 0 2 0 0 14 0 1602.8253 P15924;Q4LE79 P15924 2000 2013 DSP;DSP variant protein Desmoplakin yes no 2 5.8896E-05 91.701 2 0.67029 0.69261 NaN 1 Median 0.67029 0.69261 NaN 1 0 Median NaN NaN NaN 0 0 Median 9585300 7019300 2566000 9585300 7019300 2566000 0 0 0 12621 1486 12970 33278;33279 51840;51841 51841 2 SVEGLQEGSVLR LHLDGNVLDHFSELRSVEGLQEGSVLRVVE ELRSVEGLQEGSVLRVVEEPYTVREARIHV R S V L R V 0 1 0 0 0 1 2 2 0 0 2 0 0 0 0 2 0 0 0 2 0 0 12 0 1272.6674 I3L2B0;K7EIG1;O75153;I3L318 I3L2B0 144 155 CLUH Clustered mitochondria protein homolog yes no 2 0.0019311 72.434 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4728900 0 4728900 4728900 0 4728900 0 0 0 12622 1321 12971 33280 51842 51842 1 SVELEEALPVTTAEGMAK ______________________________ LEEALPVTTAEGMAKKVTKAGGSAALSPSK M S V A K K 3 0 0 0 0 0 4 1 0 0 2 1 1 0 1 1 2 0 0 2 0 0 18 0 1873.9343 Q92522 Q92522 2 19 H1FX Histone H1x yes yes 2 1.4695E-31 150.21 3 1 0.95842 0.96449 45.811 4 Median 0.96203 0.96824 18.555 3 0 Median 0.58369 0.45216 NaN 1 0 Median 148390000 73029000 75361000 135110000 65042000 70064000 13284000 7986500 5297500 12623 1946 12972;12973 33281;33282;33283;33284 51843;51844;51845;51846;51847;51848;51849;51850;51851 51847 1795 9 SVEPQDAGPLER HSKGGGRVDEGPQPRSVEPQDAGPLERSQG QPRSVEPQDAGPLERSQGDEAGGHGEDRPE R S V E R S 1 1 0 1 0 1 2 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 12 0 1296.631 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2;B3KMQ6;V9H0E3 Q6PK21 205 216 OGFR Opioid growth factor receptor yes no 2 0.00022107 84.17 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12624 469 12974 33285;33286;33287;33288 51852;51853;51854;51855 51855 4 SVFALTNGIYPHK LPKIKAIPQLQGYLRSVFALTNGIYPHKLV LRSVFALTNGIYPHKLVF____________ R S V H K L 1 0 1 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 1 0 0 13 0 1445.7667 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 273 285 RPL6 60S ribosomal protein L6 yes no 2;3 2.2729E-06 123.86 2 4 0.89722 0.72935 19.697 5 Median 0.97627 1.0916 NaN 1 0 Median 0.89258 0.72508 6.0913 4 0 Median 209910000 125020000 84893000 151100000 95893000 55208000 58810000 29124000 29685000 12625 342 12975 33289;33290;33291;33292;33293;33294 51856;51857;51858;51859;51860;51861;51862;51863;51864;51865;51866;51867;51868 51860 13 SVFDEELTNTSK EPVRGPAKKQKQGKKSVFDEELTNTSKKAL GKKSVFDEELTNTSKKALKQYRASPSFEER K S V S K K 0 0 1 1 0 0 2 0 0 0 1 1 0 1 0 2 2 0 0 1 0 0 12 0 1368.6409 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 715 726 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 1.4996E-12 128.03 2 2 0.93745 0.93361 3.1409 4 Linear 0.82029 0.92846 1.185 2 0 Median 1.0853 0.8841 2.0558 2 0 Median 325180000 179450000 145740000 269750000 153130000 116610000 55435000 26313000 29122000 12626 899;1099 12976 33295;33296;33297;33298 51869;51870;51871;51872;51873;51874 51870 6 SVFDEELTNTSKK EPVRGPAKKQKQGKKSVFDEELTNTSKKAL KKSVFDEELTNTSKKALKQYRASPSFEERK K S V K K A 0 0 1 1 0 0 2 0 0 0 1 2 0 1 0 2 2 0 0 1 0 0 13 1 1496.7359 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 715 727 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.047915 45.653 2 1.1586 0.99338 5.8417 2 Median NaN NaN NaN 0 0 Median 1.1586 0.99338 5.8417 2 0 Median 10708000 5157400 5550600 0 0 0 10708000 5157400 5550600 12627 899;1099 12977 33299;33300 51875;51876 51876 2 SVFDIPIFTEEFLNHSK QATHDHEKETEVKERSVFDIPIFTEEFLNH FDIPIFTEEFLNHSKAREAELRQLRKSNME R S V S K A 0 0 1 1 0 0 2 0 1 2 1 1 0 3 1 2 1 0 0 1 0 0 17 0 2022.0098 B4DMG1;Q9NP66 B4DMG1 101 117 HMG20A High mobility group protein 20A yes no 3 0.02004 32.341 3 0.79833 0.80717 1.5801 2 Median 0.79833 0.80717 1.5801 2 0 Median NaN NaN NaN 0 0 Median 17577000 11251000 6326900 17577000 11251000 6326900 0 0 0 12628 1005 12978 33301;33302;33303 51877;51878;51879 51877 3 SVFEEEVR ENRCQSLQEELDFRKSVFEEEVRETRRRHE EELDFRKSVFEEEVRETRRRHERRLVEVDS K S V V R E 0 1 0 0 0 0 3 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 993.47673 Q03252 Q03252 224 231 LMNB2 Lamin-B2 yes yes 2 0.036094 55.531 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14794000 14794000 0 14794000 14794000 0 0 0 0 12629 1682 12979 33304 51880 51880 1 SVFGHICSHLTPR ALLAQPSHLMRQVARSVFGHICSHLTPRAL ARSVFGHICSHLTPRALQLILDVLNPETSE R S V P R A 0 1 0 0 1 0 0 1 2 1 1 0 0 1 1 2 1 0 0 1 0 0 13 0 1509.7511 Q9BQG0;I3L1L3 Q9BQG0 672 684 MYBBP1A Myb-binding protein 1A yes no 3 0.023441 24.084 1 1.0246 0.85717 NaN 1 Median NaN NaN NaN 0 0 Median 1.0246 0.85717 NaN 1 0 Median 3201500 1509000 1692500 0 0 0 3201500 1509000 1692500 12630 1997 12980 33305 51881 51881 1 SVFINNVLSK SAVPKQVVTGTVLTRSVFINNVLSKIGEVW TVLTRSVFINNVLSKIGEVWASKEPINSTT R S V S K I 0 0 2 0 0 0 0 0 0 1 1 1 0 1 0 2 0 0 0 2 0 0 10 0 1119.6288 Q8WYP5;B3KVE5 Q8WYP5 1052 1061 AHCTF1 Protein ELYS yes no 2 6.3276E-05 84.213 2 2 3.049 2.4496 19.416 3 Median 1.5556 1.7544 NaN 1 0 Median 3.086 2.4556 0.34779 2 0 Median 110780000 37281000 73496000 77216000 29262000 47954000 33562000 8019700 25542000 12631 1945 12981 33306;33307;33308;33309 51882;51883;51884;51885;51886;51887 51884 6 SVFVGNLPYK IRVDLASETSSRDKRSVFVGNLPYKVEESA SRDKRSVFVGNLPYKVEESAIEKHFLDCGS R S V Y K V 0 0 1 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 1 2 0 0 10 0 1122.6073 P42696;A2A2V2 P42696 288 297 RBM34 RNA-binding protein 34 yes no 2 0.014352 49.097 1 0.97916 0.77604 NaN 1 Median NaN NaN NaN 0 0 Median 0.97916 0.77604 NaN 1 0 Median 4783900 2242000 2541900 0 0 0 4783900 2242000 2541900 12632 1566 12982 33310 51888;51889 51888 2 SVGDESWEQTQEGDVGALYHEQLALK THAEKELQNDMTDEKSVGDESWEQTQEGDV EGDVGALYHEQLALKTDCQERLDHTNFRFL K S V L K T 2 0 0 2 0 3 4 3 1 0 3 1 0 0 0 2 1 1 1 2 0 0 26 0 2888.3464 O75691 O75691 783 808 UTP20 Small subunit processome component 20 homolog yes yes 3 9.0175E-10 54.728 2 2 1.142 1.0302 15.908 4 Median 0.87528 0.89208 2.287 2 0 Median 1.4527 1.1739 0.39638 2 0 Median 41755000 16819000 24936000 26204000 11187000 15017000 15551000 5631900 9918800 12633 1412 12983 33311;33312;33313;33314 51890;51891;51892;51893;51894;51895 51890 6 SVGDGETVEFDVVEGEK HQTAIKKNNPRKYLRSVGDGETVEFDVVEG GDGETVEFDVVEGEKGAEAANVTGPGGVPV R S V E K G 0 0 0 2 0 0 4 3 0 0 0 1 0 1 0 1 1 0 0 4 0 0 17 0 1794.816 P67809;Q6PKI6;Q7KZ24;H0Y449;A0A0D9SEI8;Q59EB5;B2RCC2;Q9Y2T7;Q59HE1;A0A024RAV4;A0A024RAQ1;P16989 P67809 102 118 YBX1;YBX3;YBX2;CSDA Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 no no 2 2.8564E-09 107.65 2 2.4089 2.6646 0.080028 2 Median 2.4089 2.6646 0.080028 2 0 Median NaN NaN NaN 0 0 Median 104400000 26029000 78368000 104400000 26029000 78368000 0 0 0 12634 1657;310 12984 33315;33316 51896;51897;51898;51899;51900;51901 51899 6 SVGDNSSDLSNVAVIDGNR GWHYLAYDWHWTTDRSVGDNSSDLSNVAVI NSSDLSNVAVIDGNRVLVTVFRQTVVPPPM R S V N R V 1 1 3 3 0 0 0 2 0 1 1 0 0 0 0 4 0 0 0 3 0 0 19 0 1917.9028 Q8N516;Q4LE38;O95163;F5H2T0;B3KXE7;B4E3I9 Q8N516 380 398 IKBKAP;IKBKAP variant protein Elongator complex protein 1 yes no 2 2.5353E-05 58.831 1 1.3761 1.3584 NaN 1 Median 1.3761 1.3584 NaN 1 0 Median NaN NaN NaN 0 0 Median 12809000 6059300 6749500 12809000 6059300 6749500 0 0 0 12635 1419 12985 33317 51902 51902 1 SVGELPSTVESLQK ETQLVLYGDVEELKRSVGELPSTVESLQKV RSVGELPSTVESLQKVQEQVYTLLSQDQAQ R S V Q K V 0 0 0 0 0 1 2 1 0 0 2 1 0 0 1 3 1 0 0 2 0 0 14 0 1472.7722 B3KVX6;Q8TB01;Q6NWZ1;A0A024RBH2;Q07065 B3KVX6 411 424 CKAP4 Cytoskeleton-associated protein 4 yes no 2 0.021622 52.6 1 0.65893 0.66551 NaN 1 Median 0.65893 0.66551 NaN 1 0 Median NaN NaN NaN 0 0 Median 8365900 4214600 4151200 8365900 4214600 4151200 0 0 0 12636 338 12986 33318 51903 51903 0 SVGGSGGGSFGDNLVTR SGSSASSVTVTRSYRSVGGSGGGSFGDNLV GGSGGGSFGDNLVTRSYLLGNSSPRTQSPQ R S V T R S 0 1 1 1 0 0 0 6 0 0 1 0 0 1 0 3 1 0 0 2 0 0 17 0 1565.7434 P02545;A0A0C4DGC5 P02545 628 644 LMNA Prelamin-A/C;Lamin-A/C yes no 2 1.9854E-08 99.941 3 2 1.4077 1.4284 16.589 4 Median 1.4077 1.6188 1.8034 2 0 Median 1.4205 1.2231 6.0456 2 0 Median 418090000 174130000 243960000 353660000 147880000 205780000 64428000 26245000 38183000 12637 1440 12987 33319;33320;33321;33322;33323 51904;51905;51906;51907;51908;51909;51910;51911;51912;51913;51914;51915;51916 51906 13 SVGQGYSVGQSMR MMSSVHLQQNNYGVKSVGQGYSVGQSMRLG VKSVGQGYSVGQSMRLGLGGNAPVSIPQQS K S V M R L 0 1 0 0 0 2 0 3 0 0 0 0 1 0 0 3 0 0 1 2 0 0 13 0 1354.6299 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 336 348 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 5.697E-05 85.813 2 0.93886 0.96524 5.195 2 Median 0.93886 0.96524 5.195 2 0 Median NaN NaN NaN 0 0 Median 32197000 14548000 17650000 32197000 14548000 17650000 0 0 0 12638 878 12988 33324;33325 51917;51918;51919;51920 51919 691 4 SVGRPPGPYTR SREVSNGIEKKGKKKSVGRPPGPYTRKMIQ GKKKSVGRPPGPYTRKMIQKTAEPLLDKES K S V T R K 0 2 0 0 0 0 0 2 0 0 0 0 0 0 3 1 1 0 1 1 0 0 11 1 1185.6255 Q9Y483;Q96G26;B4DZG1 Q9Y483 401 411 MTF2 Metal-response element-binding transcription factor 2 yes no 3 0.0040514 47.712 2 1.1825 1.3098 13.38 2 Median 1.1825 1.3098 13.38 2 0 Median NaN NaN NaN 0 0 Median 55807000 24354000 31453000 55807000 24354000 31453000 0 0 0 12639 2143 12989 33326;33327 51921;51922 51922 2 SVGVISPYR LAPSSKKGKARLSPRSVGVISPYRKQVEKI ARLSPRSVGVISPYRKQVEKIRYCITKLDR R S V Y R K 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 2 0 0 1 2 0 0 9 0 976.53418 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 764 772 MOV10 Putative helicase MOV-10 yes no 2 0.0063471 64.42 2 1.3436 1.3428 17.108 2 Median 1.3436 1.3428 17.108 2 0 Median NaN NaN NaN 0 0 Median 27886000 12407000 15478000 27886000 12407000 15478000 0 0 0 12640 1102 12990 33328;33329 51923;51924;51925 51925 3 SVHFQDSLDLILSADSR KPLLVKDHQYGLPIKSVHFQDSLDLILSAD HFQDSLDLILSADSRIVKMWNKNSGKIFTS K S V S R I 1 1 0 3 0 1 0 0 1 1 3 0 0 1 0 4 0 0 0 1 0 0 17 0 1901.9483 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 277 293 NOL10 Nucleolar protein 10 yes no 3 0.00045702 40.515 2 1.4066 1.1899 5.14 2 Median NaN NaN NaN 0 0 Median 1.4066 1.1899 5.14 2 0 Median 14782000 5717700 9064000 0 0 0 14782000 5717700 9064000 12641 2000 12991 33330;33331 51926;51927;51928;51929 51927 4 SVHYCPATK GIVTKCSLVRPKVVRSVHYCPATKKTIERR RPKVVRSVHYCPATKKTIERRYSDLTTLVA R S V T K K 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 1 0 1 1 0 0 9 0 1061.4964 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 144 152 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 1.0938E-33 170.3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6429500 0 6429500 6429500 0 6429500 0 0 0 12642 568 12992 33332 51930 51930 1 SVIEQGGIQTVDQLIK VSGDTVPQSILTKSRSVIEQGGIQTVDQLI VIEQGGIQTVDQLIKELPELLQRNREILDE R S V I K E 0 0 0 1 0 3 1 2 0 3 1 1 0 0 0 1 1 0 0 2 0 0 16 0 1726.9465 B7Z5C1;B4DHD2;Q4W4Y1;Q8WUM4 B7Z5C1 204 219 DRIP4;PDCD6IP Programmed cell death 6-interacting protein yes no 2 0.0035117 56.122 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3796000 0 3796000 3796000 0 3796000 0 0 0 12643 974 12993 33333 51931 51931 1 SVILISTVR DLKVGSVEEFQGQERSVILISTVRSSQSFV FQGQERSVILISTVRSSQSFVQLDLDFNLG R S V V R S 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 1 0 0 2 0 0 9 0 986.61243 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 812 820 MOV10 Putative helicase MOV-10 yes no 2 0.0060214 65.246 2 1.4358 1.4684 0.56243 2 Median 1.4358 1.4684 0.56243 2 0 Median NaN NaN NaN 0 0 Median 20383000 8482600 11900000 20383000 8482600 11900000 0 0 0 12644 1102 12994 33334;33335 51932;51933;51934 51932 3 SVLASASWDK GHEGPISGLCFNPMKSVLASASWDKTVRLW FNPMKSVLASASWDKTVRLWDMFDSWRTKE K S V D K T 2 0 0 1 0 0 0 0 0 0 1 1 0 0 0 3 0 1 0 1 0 0 10 0 1062.5346 Q15269;A0A0B4J2E5;Q59FM2 Q15269 514 523 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.00060252 84.213 2 1 1.0089 0.95214 4.4615 2 Median 0.84547 0.92257 NaN 1 0 Median 1.2038 0.98265 NaN 1 0 Median 72149000 31909000 40241000 66474000 29283000 37190000 5675900 2625600 3050300 12645 1756 12995 33336;33337;33338 51935;51936;51937;51938;51939 51936 5 SVLDAAQIVGLNCLR CVISVPSFFTDAERRSVLDAAQIVGLNCLR SVLDAAQIVGLNCLRLMNDMTAVALNYGIY R S V L R L 2 1 1 1 1 1 0 1 0 1 3 0 0 0 0 1 0 0 0 2 0 0 15 0 1627.8716 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;B4DZP3 A0A024RDQ0 155 169 HSPH1 Heat shock protein 105 kDa yes no 2 0.00022491 91.313 1 2.2668 2.3726 NaN 1 Median 2.2668 2.3726 NaN 1 0 Median NaN NaN NaN 0 0 Median 10828000 3559100 7268800 10828000 3559100 7268800 0 0 0 12646 390 12996 33339 51940 51940 1 SVLDFDFEK DRRSRHCPYLDTINRSVLDFDFEKLCSISL LDTINRSVLDFDFEKLCSISLSHINAYACL R S V E K L 0 0 0 2 0 0 1 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 9 0 1098.5233 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;F8WC91;C9JIU2 B9A018 114 122 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.024384 48.283 2 1 0.9819 0.9657 27.134 3 Plateau 0.96802 0.9596 0.89702 2 0 Median 0.68479 0.59984 NaN 1 0 Median 36488000 20093000 16395000 35182000 19338000 15844000 1306700 755340 551370 12647 1119 12997 33340;33341;33342 51941;51942;51943;51944 51941 4 SVLDQLQDK VAMELRLTPLTVLLRSVLDQLQDKDPARIF LTVLLRSVLDQLQDKDPARIFAQPVSLKEV R S V D K D 0 0 0 2 0 2 0 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1044.5451 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41;B7Z926;Q59G93;Q9Y4Q3;B4DZC2 A0A024R4W4 573 581 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.00245 74.301 2 1.2081 1.3116 9.4129 2 Median 1.2081 1.3116 9.4129 2 0 Median NaN NaN NaN 0 0 Median 74541000 31915000 42626000 74541000 31915000 42626000 0 0 0 12648 162 12998 33343;33344 51945;51946 51945 2 SVLDQLQDKDPAR VAMELRLTPLTVLLRSVLDQLQDKDPARIF LRSVLDQLQDKDPARIFAQPVSLKEVPDYL R S V A R I 1 1 0 3 0 2 0 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 13 1 1483.7631 A0A024R4W4;A0A024R4V5;O95696;Q86X06;B4E3L9;J3KQ61;B4DZ41;B7Z926;Q59G93;Q9Y4Q3;B4DZC2 A0A024R4W4 573 585 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 3 0.0064905 37.594 1 1.8142 1.5938 NaN 1 Median NaN NaN NaN 0 0 Median 1.8142 1.5938 NaN 1 0 Median 2358300 963560 1394700 0 0 0 2358300 963560 1394700 12649 162 12999 33345 51947 51947 1 SVLEDVNEK VVLEESKCLVRSFLKSVLEDVNEKECLMLK VRSFLKSVLEDVNEKECLMLKQLWSSSKGL K S V E K E 0 0 1 1 0 0 2 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 1031.5135 A0A0B4J291;Q8N8U2 A0A0B4J291 470 478 CDYL2 Chromodomain Y-like protein 2 yes no 2 0.001367 86.332 2 2 1.4349 1.369 19.589 4 Median 1.4546 1.6117 0.31027 2 0 Median 1.4232 1.1487 2.0368 2 0 Median 141200000 60551000 80654000 125400000 54058000 71346000 15801000 6492600 9308200 12650 503 13000 33346;33347;33348;33349 51948;51949;51950;51951;51952;51953;51954 51949 7 SVLELIPELNEK LLRNSRKQGKASTVKSVLELIPELNEKEEA TVKSVLELIPELNEKEEAYNSLMKSYVSEK K S V E K E 0 0 1 0 0 0 3 0 0 1 3 1 0 0 1 1 0 0 0 1 0 0 12 0 1382.7657 E5KNY5;P42704;H7C3W8 E5KNY5 1306 1317 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 3.6232E-13 135.55 1 2 1.4074 1.1203 46.615 3 Median 2.286 2.4752 NaN 1 0 Median 1.368 1.1044 2.0168 2 0 Median 58800000 19557000 39243000 43551000 13183000 30368000 15249000 6374100 8874600 12651 1207 13001 33350;33351;33352 51955;51956;51957;51958;51959;51960 51956 6 SVLGDVGITEVFSDR LHLPKLSISETYDLKSVLGDVGITEVFSDR SVLGDVGITEVFSDRADLSGITKEQPLKVS K S V D R A 0 1 0 2 0 0 1 2 0 1 1 0 0 1 0 2 1 0 0 3 0 0 15 0 1592.8046 CON__P34955 CON__P34955 323 337 yes yes 2 1.316E-10 113.24 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30139000 30139000 0 15831000 15831000 0 14307000 14307000 0 + 12652 1164 13002 33353;33354;33355 51961;51962;51963 51961 3 SVLLLAYK LKTKGDFILVGDLMRSVLLLAYKPMEGNFE LVGDLMRSVLLLAYKPMEGNFEEIARDFNP R S V Y K P 1 0 0 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 1 0 0 8 0 905.5586 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 929 936 DDB1 DNA damage-binding protein 1 yes no 1;2 0.0015928 127.84 4 2 0.69805 0.76412 22.11 6 Median 0.64749 0.7131 8.3652 4 0 Median 1.3228 1.0682 7.0066 2 0 Median 446890000 268780000 178110000 431080000 262040000 169040000 15815000 6743900 9071200 12653 1770 13003 33356;33357;33358;33359;33360;33361 51964;51965;51966;51967;51968;51969;51970;51971 51967 8 SVLLLAYKPMEGNFEEIAR LKTKGDFILVGDLMRSVLLLAYKPMEGNFE LAYKPMEGNFEEIARDFNPNWMSAVEILDD R S V A R D 2 1 1 0 0 0 3 1 0 1 3 1 1 1 1 1 0 0 1 1 0 0 19 1 2179.1347 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 929 947 DDB1 DNA damage-binding protein 1 yes no 3 3.3331E-13 110.77 2 2 0.95695 1.1386 24.377 4 Median 0.95695 1.1386 5.8514 2 0 Median 1.1036 0.93511 36.889 2 0 Median 193860000 99197000 94659000 170390000 86796000 83596000 23464000 12401000 11063000 12654 1770 13004;13005 33362;33363;33364;33365 51972;51973;51974;51975;51976;51977;51978;51979 51975 1640 8 SVLRPLDK ______________________________ ______________________________ M S V D K L 0 1 0 1 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 8 1 926.55492 A0A024R1Q3;Q9NSP4 A0A024R1Q3 2 9 C22orf18;CENPM Centromere protein M yes no 2 0.050545 40.728 1 0.85144 0.95667 NaN 1 Median 0.85144 0.95667 NaN 1 0 Median NaN NaN NaN 0 0 Median 13089000 6060900 7028000 13089000 6060900 7028000 0 0 0 12655 83 13006 33366 51980 51980 0 SVNDQPSGNLPFLKPDDIQYFDK GMTGFHMQTEDRTMKSVNDQPSGNLPFLKP NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ K S V D K L 0 0 2 4 0 2 0 1 0 1 2 2 0 2 3 2 0 0 1 1 0 0 23 1 2636.2758 O75533;Q7Z497;A0JLT9;Q32Q20;A0PJH5 O75533 455 477 SF3B1 Splicing factor 3B subunit 1 yes no 3 9.0973E-06 44.258 2 2 0.97838 0.97207 42.178 4 Median 1.1814 1.3733 1.2296 2 0 Median 0.77543 0.66338 6.3942 2 0 Median 45230000 23042000 22188000 33262000 15831000 17431000 11968000 7211100 4756700 12656 1408 13007 33367;33368;33369;33370 51981;51982;51983;51984;51985;51986 51981 6 SVNELIYK RIVEPYIAWGYPNLKSVNELIYKRGYGKIN WGYPNLKSVNELIYKRGYGKINKKRIALTD K S V Y K R 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 8 0 964.52295 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 160 167 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2 0.0080145 80.455 2 2 0.95456 1.1347 25.446 4 Linear 0.9498 1.1209 1.0814 2 0 Median 0.88184 0.72274 3.9121 2 0 Median 876820000 449700000 427110000 815310000 416390000 398910000 61509000 33313000 28197000 12657 240 13008 33371;33372;33373;33374 51987;51988;51989;51990;51991;51992;51993;51994 51989 8 SVNLLVVK DSRIEDLEEGQQVIRSVNLLVVKVLEKSDQ EGQQVIRSVNLLVVKVLEKSDQTNILSALL R S V V K V 0 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 3 0 0 8 0 870.55385 Q14008;Q8IYN5 Q14008 1667 1674 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.031924 50.966 1 1.3645 1.4265 NaN 1 Median 1.3645 1.4265 NaN 1 0 Median NaN NaN NaN 0 0 Median 10892000 4650600 6241700 10892000 4650600 6241700 0 0 0 12658 1725 13009 33375 51995 51995 1 SVPGVCGASQTHQK SSEVLQGLDFFGNKKSVPGVCGASQTHQKP KSVPGVCGASQTHQKPQNGEKKEESLTERK K S V Q K P 1 0 0 0 1 2 0 2 1 0 0 1 0 0 1 2 1 0 0 2 0 0 14 0 1454.6936 Q9Y2R4;Q59H21;A0A087X1P7;A0A087WTD6;A0A087X069 Q9Y2R4 54 67 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 0.0036845 46.73 1 1 0.99553 0.92772 40.331 2 Median 1.1909 1.2339 NaN 1 0 Median 0.83223 0.69754 NaN 1 0 Median 6347600 3783600 2563900 4716500 2845100 1871400 1631100 938540 692550 12659 2126 13010 33376;33377 51996;51997;51998 51997 3 SVPTTQCLDNSK EISSVKLVSRYGELKSVPTTQCLDNSKKNE ELKSVPTTQCLDNSKKNESPFWKLYESVKK K S V S K K 0 0 1 1 1 1 0 0 0 0 1 1 0 0 1 2 2 0 0 1 0 0 12 0 1348.6293 P46013 P46013 220 231 MKI67 Antigen KI-67 yes yes 2 0.00014601 93.096 2 2 2.6419 2.4685 41.327 4 Median 1.6705 1.7342 10.857 2 0 Median 4.3407 3.4935 10.042 2 0 Median 68025000 20480000 47545000 46378000 15482000 30896000 21647000 4997800 16649000 12660 1569 13011 33378;33379;33380;33381 51999;52000;52001;52002 51999 4 SVPVTKPVPVTK VTKAMPVTKPITVTKSVPVTKPVPVTKPIT VTKSVPVTKPVPVTKPITVTKLVTVTKPVP K S V T K P 0 0 0 0 0 0 0 0 0 0 0 2 0 0 3 1 2 0 0 4 0 0 12 1 1250.7598 Q96KM6 Q96KM6 263 274 ZNF512B Zinc finger protein 512B yes yes 2 0.012433 66.595 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12661 1976 13012 33382 52003 52003 1 SVPVTVDDDDDDNDPENR HTGFCQSSGDEALSKSVPVTVDDDDDDNDP VTVDDDDDDNDPENRIAKKMLLEEIKANLS K S V N R I 0 1 2 7 0 0 1 0 0 0 0 0 0 0 2 1 1 0 0 3 0 0 18 0 2015.8192 A4LAA3;P46100;A0A096LNL9;B7Z1D8 A4LAA3 1253 1270 ATRX Transcriptional regulator ATRX no no 2 4.0497E-06 84.468 3 0.93299 0.95638 13.974 2 Median 0.93299 0.95638 13.974 2 0 Median NaN NaN NaN 0 0 Median 51865000 23989000 27876000 51865000 23989000 27876000 0 0 0 12662 672 13013 33383;33384;33385 52004;52005;52006;52007;52008;52009;52010;52011 52007 8 SVQEFLTDMK DFQTVQNKCSCGSYRSVQEFLTDMKQVFTN CGSYRSVQEFLTDMKQVFTNAEVYNCRGSH R S V M K Q 0 0 0 1 0 1 1 0 0 0 1 1 1 1 0 1 1 0 0 1 0 0 10 0 1196.5747 Q9UIG0 Q9UIG0 1400 1409 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0021686 81.972 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5913000 0 5913000 0 0 0 5913000 0 5913000 12663 2103 13014 33386;33387 52012;52013 52013 2 SVQEGENPDDGVR ______________________________ KRSVQEGENPDDGVRGSPPEDYRLGQVASS R S V V R G 0 1 1 2 0 1 2 2 0 0 0 0 0 0 1 1 0 0 0 2 0 0 13 0 1400.6168 P42696;A2A2V2;Q5TCT4;H7C5M1 P42696 14 26 RBM34 RNA-binding protein 34 yes no 2 1.5124E-06 102.52 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12664 1566 13015 33388;33389;33390 52014;52015;52016 52015 3 SVQETVLPIK AAEAKKKAVKESSIRSVQETVLPIKKRKTR ESSIRSVQETVLPIKKRKTRETVSIEVKEV R S V I K K 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 1 1 0 0 2 0 0 10 0 1112.6441 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;A0A075BPP5 A0A140VKC4 307 316 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.0029629 66.692 2 0.61193 0.4909 5.1115 2 Median NaN NaN NaN 0 0 Median 0.61193 0.4909 5.1115 2 0 Median 4519600 2755000 1764600 0 0 0 4519600 2755000 1764600 12665 623 13016 33391;33392 52017;52018 52017 2 SVQEVLQK AEKWNENVQYLSEDRSVQEVLQKHFNISKN QYLSEDRSVQEVLQKHFNISKNLRSLHMLL R S V Q K H 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 8 0 929.5182 A8K7H4;O43929;Q96B14;B7Z2M4;Q53TH5;B7Z632 A8K7H4 261 268 ORC4;ORC4L Origin recognition complex subunit 4 yes no 2 0.0069463 85.064 1 1 1.7216 1.7267 NaN 1 Median 1.7216 1.7267 NaN 1 0 Median NaN NaN NaN 0 0 Median 13798000 5349600 8448400 13798000 5349600 8448400 0 0 0 + 12666 772 13017 33393;33394 52019;52020;52021 52019 3 SVQNDSQAIAEVLNQLK QGSSHHITVKINELKSVQNDSQAIAEVLNQ QNDSQAIAEVLNQLKDMLANFRGSEKYCYL K S V L K D 2 0 2 1 0 3 1 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 17 0 1855.964 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 711 727 DSP;DSP variant protein Desmoplakin yes no 2 1.1639E-26 138.89 2 2 0.53843 0.47858 15.483 2 Median 0.52449 0.53395 NaN 1 0 Median 0.55275 0.42895 NaN 1 0 Median 74141000 59104000 15037000 49514000 39033000 10482000 24627000 20071000 4555100 12667 1486 13018 33395;33396;33397;33398 52022;52023;52024;52025;52026;52027 52022 6 SVQPTVSLGGFEITPPVVLR ______________________________ VSLGGFEITPPVVLRLKCGSGPVHISGQHL M S V L R L 0 1 0 0 0 1 1 2 0 1 2 0 0 1 3 2 2 0 0 4 0 0 20 0 2095.1677 Q9NX34 Q9NX34 2 21 yes yes 2 2.2926E-17 113.63 2 0.97469 1.0523 6.2257 2 Median 0.97469 1.0523 6.2257 2 0 Median NaN NaN NaN 0 0 Median 83911000 42479000 41432000 83911000 42479000 41432000 0 0 0 12668 2078 13019 33399;33400 52028;52029;52030 52029 3 SVQTTLQTDEVK GPGYHIMLPFITTFRSVQTTLQTDEVKNVP TFRSVQTTLQTDEVKNVPCGTSGGVMIYID R S V V K N 0 0 0 1 0 2 1 0 0 0 1 1 0 0 0 1 3 0 0 2 0 0 12 0 1347.6882 B0QZ43;E5RHW4;B2RDK6;D3DR65;O94905;O75477 B0QZ43 63 74 ERLIN1;ERLIN2;SPFH1 Erlin-2;Erlin-1 yes no 2 1.1836E-22 155.15 2 1 2.3755 2.6974 56.806 3 Plateau 2.0058 2.1601 41.15 2 0 Median 1.1183 0.92785 NaN 1 0 Median 73385000 23647000 49738000 71096000 22553000 48542000 2289100 1093400 1195800 12669 808 13020 33401;33402;33403 52031;52032;52033;52034;52035;52036;52037 52031 7 SVSLTGAPESVQK CKVQISPDSGGLPERSVSLTGAPESVQKAK ERSVSLTGAPESVQKAKMMLDDIVSRGRGG R S V Q K A 1 0 0 0 0 1 1 1 0 0 1 1 0 0 1 3 1 0 0 2 0 0 13 0 1301.6827 A0A087WTP3;Q92945;M0R0I5;M0QYH3;M0QXW7 A0A087WTP3 191 203 KHSRP Far upstream element-binding protein 2 yes no 2 3.625E-09 121.61 2 2 2.2089 2.421 34.081 3 Median 2.358 2.4957 4.2949 2 0 Median 1.6639 1.3863 NaN 1 0 Median 72114000 20351000 51763000 69249000 19725000 49525000 2864800 626680 2238100 12670 403 13021 33404;33405;33406;33407 52038;52039;52040;52041;52042;52043 52040 6 SVSLVGEDER VHRVGRTARAGRAGRSVSLVGEDERKMLKE GRAGRSVSLVGEDERKMLKEIVKAAKAPVK R S V E R K 0 1 0 1 0 0 2 1 0 0 1 0 0 0 0 2 0 0 0 2 0 0 10 0 1089.5302 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 532 541 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.061197 34.803 1 0.92124 0.79796 NaN 1 Median NaN NaN NaN 0 0 Median 0.92124 0.79796 NaN 1 0 Median 2685200 1277600 1407700 0 0 0 2685200 1277600 1407700 12671 899;1099 13022 33408 52044 52044 1 SVSLVGEDERK VHRVGRTARAGRAGRSVSLVGEDERKMLKE RAGRSVSLVGEDERKMLKEIVKAAKAPVKA R S V R K M 0 1 0 1 0 0 2 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 11 1 1217.6252 B3GQE6;Q53G15;B7Z6D5;Q96GQ7 B3GQE6 532 542 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2;3 1.521E-22 190.96 3 3 0.91663 0.89672 5.905 6 Median 0.78525 0.93938 5.5818 3 0 Plateau 1.0707 0.89038 7.447 3 0 Median 508790000 289970000 218820000 442040000 257710000 184330000 66747000 32255000 34491000 12672 899;1099 13023 33409;33410;33411;33412;33413;33414 52045;52046;52047;52048;52049;52050;52051;52052;52053;52054;52055 52050 11 SVSPCSNVESR SPSRVTSRTTPRRSRSVSPCSNVESRLLPR RRSRSVSPCSNVESRLLPRYSHSGSSSPDT R S V S R L 0 1 1 0 1 0 1 0 0 0 0 0 0 0 1 4 0 0 0 2 0 0 11 0 1220.5455 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8 A0A140VK53 952 962 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 2 0.053334 43.282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1903300 0 1903300 1903300 0 1903300 0 0 0 12673 619 13024 33415 52056 52056 1 SVSSNDAYNFNLEEGVHLTPFR KSENKKTVPQKKMHKSVSSNDAYNFNLEEG YNFNLEEGVHLTPFRQKVSNDSNREENNES K S V F R Q 1 1 3 1 0 0 2 1 1 0 2 0 0 2 1 3 1 0 1 2 0 0 22 0 2495.1717 B5BUA4;Q5FBB7 B5BUA4 328 349 SGOL1 Shugoshin-like 1 yes no 3 2.3998E-08 63.726 1 0.86342 0.86619 NaN 1 Median 0.86342 0.86619 NaN 1 0 Median NaN NaN NaN 0 0 Median 17370000 8444000 8926000 17370000 8444000 8926000 0 0 0 12674 1075 13025 33416 52057 52057 1 SVSSNVASVSPIPAGSK ASPRVPGGSPRTPNRSVSSNVASVSPIPAG SSNVASVSPIPAGSKKIDPNMKAGATSEGV R S V S K K 2 0 1 0 0 0 0 1 0 1 0 1 0 0 2 6 0 0 0 3 0 0 17 0 1585.8312 B3KM42;E9PHI6;B4DDM4;Q9Y6G9 B3KM42 266 282 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes no 2 0.0011563 60.364 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3957300 0 3957300 3957300 0 3957300 0 0 0 12675 901 13026 33417 52058 52058 1 SVSSVLSSLTPAK YLETHPRPPKPDPVKSVSSVLSSLTPAKVA VKSVSSVLSSLTPAKVAPVINNGSPTILGK K S V A K V 1 0 0 0 0 0 0 0 0 0 2 1 0 0 1 5 1 0 0 2 0 0 13 0 1274.7082 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q9BRL8;F8W9Y9 E7ESY4 555 567 MTA1 Metastasis-associated protein MTA1 yes no 2 0.00010161 92.445 2 2 1.2311 1.1301 34.103 4 Median 0.78051 0.83054 5.0046 2 0 Median 1.8544 1.496 1.109 2 0 Median 89812000 46459000 43354000 71301000 39939000 31362000 18511000 6519600 11991000 12676 1223 13027 33418;33419;33420;33421 52059;52060;52061;52062;52063;52064;52065;52066 52061 8 SVTEQGAELSNEER AEQAERYDDMAACMKSVTEQGAELSNEERN KSVTEQGAELSNEERNLLSVAYKNVVGARR K S V E R N 1 1 1 0 0 1 4 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 14 0 1547.7063 D0PNI1;P63104;E7EX29;E7ESK7;E5RGE1;Q6LD62;E5RIR4;E9PD24;E7EVZ2 D0PNI1 28 41 YWHAZ;14-3-3 protein 14-3-3 protein zeta/delta yes no 2 2.5922E-06 105.03 2 1 2.05 2.0785 48.726 3 Plateau 1.9921 2.0079 10.212 2 0 Median 1.0167 0.87149 NaN 1 0 Median 35518000 14178000 21340000 32682000 12646000 20035000 2836500 1531700 1304800 12677 1182 13028 33422;33423;33424 52067;52068;52069;52070 52068 4 SVTHFDSLAVIDIPGADTLDK IKAKPTSDKPGSPYRSVTHFDSLAVIDIPG SLAVIDIPGADTLDKLFDHAVSKFGKKDSL R S V D K L 2 0 0 4 0 0 0 1 1 2 2 1 0 1 1 2 2 0 0 2 0 0 21 0 2213.1216 Q8TAF6;O60488;B4DH39;D6RF95;D6RFW9;D6RDA8;D6RD96 Q8TAF6 20 40 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 3 2.3902E-07 56.055 2 2 1.4244 1.2624 47.653 4 Median 1.938 1.9265 15.176 2 0 Median 1.0752 0.86077 9.5608 2 0 Median 62385000 23885000 38500000 50808000 17981000 32827000 11577000 5904100 5672900 12678 1394 13029 33425;33426;33427;33428 52071;52072;52073;52074;52075;52076;52077;52078 52072 8 SVTLGYLFSQGHLTR QGALLTHFLQPIYLKSVTLGYLFSQGHLTR SVTLGYLFSQGHLTRAICCRVTRDGSAFED K S V T R A 0 1 0 0 0 1 0 2 1 0 3 0 0 1 0 2 2 0 1 1 0 0 15 0 1677.8839 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3 A0A024DAK3 1064 1078 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.0013917 72.34 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12679 5 13030 33429 52079 52079 1 SVTVPEAENPR KKAAVAVVPLVSEDKSVTVPEAENPRDSLV SEDKSVTVPEAENPRDSLVLPPTQSSSDSS K S V P R D 1 1 1 0 0 0 2 0 0 0 0 0 0 0 2 1 1 0 0 2 0 0 11 0 1197.599 B4DLG2;O75152;B4DYM8;A0A1B0GTU1;A0A024R8H9;A0A1B0GUI2 B4DLG2 659 669 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.00033438 86.624 2 1.5573 1.6346 25.465 2 Median 1.5573 1.6346 25.465 2 0 Median NaN NaN NaN 0 0 Median 34087000 12437000 21650000 34087000 12437000 21650000 0 0 0 12680 996 13031 33430;33431 52080;52081;52082 52082 3 SVVAPPGAPK AHEMMEEEEEIPKPKSVVAPPGAPKKEHVN IPKPKSVVAPPGAPKKEHVNVVFIGHVDAG K S V P K K 2 0 0 0 0 0 0 1 0 0 0 1 0 0 3 1 0 0 0 2 0 0 10 0 921.52837 H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170;H3BSV8 H3BR35 68 77 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 2 0.0041076 61.962 2 3.7374 4.0897 3.4981 2 Median 3.7374 4.0897 3.4981 2 0 Median NaN NaN NaN 0 0 Median 92099000 20807000 71292000 92099000 20807000 71292000 0 0 0 12681 715 13032 33432;33433 52083;52084;52085;52086;52087 52083 5 SVVCSDVEQQVIVIEEEKK RRILSKPIEVQVGGRSVVCSDVEQQVIVIE SDVEQQVIVIEEEKKFLKLLELLGHYQESG R S V K K F 0 0 0 1 1 2 4 0 0 2 0 2 0 0 0 2 0 0 0 5 0 0 19 1 2217.1199 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 587 605 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 0.040079 12.303 1 0.58387 0.51212 NaN 1 Median NaN NaN NaN 0 0 Median 0.58387 0.51212 NaN 1 0 Median 2822400 1679900 1142500 0 0 0 2822400 1679900 1142500 12682 511 13033 33434 52088;52089 52089 2 SVVGNLHR TGVILANDANAERLKSVVGNLHRLGVTNTI ANAERLKSVVGNLHRLGVTNTIISHYDGRQ K S V H R L 0 1 1 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 880.4879 P46087 P46087 424 431 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.0035834 94.163 1 2 1.1242 0.96357 1.6256 2 Median NaN NaN NaN 0 0 Median 1.1242 0.96357 1.6256 2 0 Median 153450000 123090000 30353000 97009000 97009000 0 56437000 26084000 30353000 12683 1570 13034 33435;33436;33437 52090;52091;52092;52093;52094 52090 5 SVVLQLADGQIFK VDGVIISLCCNSKTKSVVLQLADGQIFKYL TKSVVLQLADGQIFKYLWESPSLAIKPWKN K S V F K Y 1 0 0 1 0 2 0 1 0 1 2 1 0 1 0 1 0 0 0 2 0 0 13 0 1416.7977 Q8N516;Q4LE38;O95163;F5H2T0;B3KXE7;B4E3I9;Q68DI5 Q8N516 568 580 IKBKAP;IKBKAP variant protein;DKFZp781H1425 Elongator complex protein 1 yes no 2 0.00011321 75.229 2 1.5321 1.5481 3.042 2 Median 1.5321 1.5481 3.042 2 0 Median NaN NaN NaN 0 0 Median 13172000 5607400 7564900 13172000 5607400 7564900 0 0 0 12684 1419 13035 33438;33439 52095;52096;52097 52097 3 SVVSDLEADDVK KTSPKLSNKELKPQKSVVSDLEADDVKGSV PQKSVVSDLEADDVKGSVPLSSSPPATHFP K S V V K G 1 0 0 3 0 0 1 0 0 0 1 1 0 0 0 2 0 0 0 3 0 0 12 0 1275.6194 P11388 P11388 1374 1385 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.1542E-13 135.86 3 3 1.3667 1.1953 17.987 5 Median 0.7479 0.89829 2.1808 2 0 Median 1.4054 1.2581 3.4608 3 0 Median 6154500000 3280200000 2874400000 5167800000 2878100000 2289700000 986730000 402120000 584600000 12685 1471 13036 33440;33441;33442;33443;33444;33445 52098;52099;52100;52101;52102;52103;52104;52105;52106;52107;52108;52109;52110;52111;52112;52113;52114;52115;52116;52117 52099 20 SVVTAPIIK ITVPLSVISQPMKGKSVVTAPIIKGNLGAN QPMKGKSVVTAPIIKGNLGANLSGLGRNII K S V I K G 1 0 0 0 0 0 0 0 0 2 0 1 0 0 1 1 1 0 0 2 0 0 9 0 926.58007 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1199 1207 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.035569 43.808 1 0.76077 0.77227 NaN 1 Median 0.76077 0.77227 NaN 1 0 Median NaN NaN NaN 0 0 Median 9111800 5342500 3769400 9111800 5342500 3769400 0 0 0 12686 135 13037 33446 52118 52118 1 SVVTSIFGVK ENPKGDNRLDLLKLKSVVTSIFGVKNTELA LLKLKSVVTSIFGVKNTELAVFHDETEIQN K S V V K N 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 2 1 0 0 3 0 0 10 0 1035.5964 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;B4DVX2;Q7L4K8;Q9P1N9 Q59G75 1133 1142 IARS;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.00035656 88.948 2 1 1.7957 1.8694 56.648 3 Median 1.8072 1.8927 1.7545 2 0 Median 0.86621 0.70968 NaN 1 0 Median 43515000 15107000 28409000 40924000 13683000 27241000 2591100 1423600 1167500 12687 1561 13038 33447;33448;33449 52119;52120;52121 52119 3 SVVTVIDVFYK ______________________________ DLLRSVVTVIDVFYKYTKQDGECGTLSKGE R S V Y K Y 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 1 4 0 0 11 0 1268.7016 CON__Q5D862;Q5D862 CON__Q5D862 7 17 FLG2 Filaggrin-2 yes no 2 0.0030546 68.657 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1416200 1416200 0 0 0 0 1416200 1416200 0 + 12688 1174 13039 33450 52122 52122 1 SVYAHFPINVVIQENGSLVEIR NMIKGVTLGFRYKMRSVYAHFPINVVIQEN INVVIQENGSLVEIRNFLGEKYIRRVRMRP R S V I R N 1 1 2 0 0 1 2 1 1 3 1 0 0 1 1 2 0 0 1 4 0 0 22 0 2483.3173 Q53Z07;P32969;E7ESE0;D6RAN4;H0Y9V9;B4E1M5;B4DLV8 Q53Z07 94 115 RPL9 60S ribosomal protein L9 yes no 3 1.4226E-16 109.37 5 2 0.8466 0.84683 9.3322 4 Median 0.72144 0.77634 10.956 2 0 Median 1.0112 0.87153 2.7301 2 0 Median 174880000 101350000 73531000 95796000 61803000 33993000 79084000 39546000 39538000 12689 1537 13040 33451;33452;33453;33454;33455;33456;33457 52123;52124;52125;52126;52127;52128;52129;52130;52131;52132 52131 9 SWADVVK KRRSGASEANLIVAKSWADVVKLGAKQTQT EANLIVAKSWADVVKLGAKQTQTKVIKHGP K S W V K L 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 2 0 0 7 0 803.41775 P46013;Q70L73 P46013 660 666 MKI67 Antigen KI-67 no no 2 0.03421 62.717 1 1.4818 1.6725 NaN 1 Median 1.4818 1.6725 NaN 1 0 Median NaN NaN NaN 0 0 Median 79388000 28385000 51002000 79388000 28385000 51002000 0 0 0 12690 1569;1864 13041 33458 52133 52133 1 SWITIPR DEFIIDESDQSFASRSWITIPRKAGSLKQR SDQSFASRSWITIPRKAGSLKQRTISPAES R S W P R K 0 1 0 0 0 0 0 0 0 2 0 0 0 0 1 1 1 1 0 0 0 0 7 0 871.49159 Q03188;H0Y8J2 Q03188 316 322 CENPC Centromere protein C yes no 2 0.034211 62.714 1 0.51173 0.50851 NaN 1 Median 0.51173 0.50851 NaN 1 0 Median NaN NaN NaN 0 0 Median 8585400 4972500 3612900 8585400 4972500 3612900 0 0 0 12691 1681 13042 33459 52134 52134 1 SWLLPVIR PLEIDGSEETLDFPRSWLLPVIRDHVQETR ETLDFPRSWLLPVIRDHVQETRLGFFTTYF R S W I R D 0 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 0 1 0 1 0 0 8 0 982.59639 B3KMR5;Q5JTH9;B3KY97 B3KMR5 567 574 RRP12 RRP12-like protein yes no 2 0.012692 67.035 2 1 1.0996 1.1432 5.4588 3 Plateau 1.0878 1.141 0.27777 2 0 Median 1.1747 1.0381 NaN 1 0 Median 48213000 25045000 23168000 44532000 23282000 21251000 3680700 1763700 1917000 12692 907 13043 33460;33461;33462 52135;52136;52137;52138;52139;52140 52138 6 SWNDCLNK IGVFSKDKFPGEFMKSWNDCLNKEGFDKID FPGEFMKSWNDCLNKEGFDKIDISAVVAYT K S W N K E 0 0 2 1 1 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 8 0 1035.4444 Q9Y5B9;Q0VGA3 Q9Y5B9 149 156 SUPT16H FACT complex subunit SPT16 yes no 2 0.0077612 81.548 2 2 0.77027 0.71958 10.723 4 Median 0.61084 0.66763 4.0317 2 0 Median 0.98047 0.79021 6.6747 2 0 Median 108020000 61669000 46353000 87478000 51413000 36065000 20544000 10256000 10288000 12693 2148 13044 33463;33464;33465;33466 52141;52142;52143;52144;52145 52143 5 SWPAAIPHLR HYGLSDSRKRTRTGRSWPAAIPHLRRRRGR TRTGRSWPAAIPHLRRRRGRLPRRALQTQN R S W L R R 2 1 0 0 0 0 0 0 1 1 1 0 0 0 2 1 0 1 0 0 0 0 10 0 1146.6298 Q9Y483;Q96G26;B4DZG1 Q9Y483 488 497 MTF2 Metal-response element-binding transcription factor 2 yes no 3 0.0095443 42.395 2 0.94665 0.97975 NaN 1 Median 0.94665 0.97975 NaN 1 0 Median NaN NaN NaN 0 0 Median 10227000 7214000 3012800 10227000 7214000 3012800 0 0 0 12694 2143 13045 33467;33468 52146;52147 52146 2 SWPQESNLNR FHPVMFDKCIQTLKKSWPQESNLNRKRKKE QTLKKSWPQESNLNRKRKKEQPKSSQANPG K S W N R K 0 1 2 0 0 1 1 0 0 0 1 0 0 0 1 2 0 1 0 0 0 0 10 0 1229.5789 P42695;G3V1A9;E9PKK4 P42695 150 159 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.00097865 78.149 1 0.7794 0.7655 NaN 1 Median 0.7794 0.7655 NaN 1 0 Median NaN NaN NaN 0 0 Median 14166000 6624200 7542000 14166000 6624200 7542000 0 0 0 12695 1565 13046 33469 52148 52148 1 SWPQESNLNRK FHPVMFDKCIQTLKKSWPQESNLNRKRKKE TLKKSWPQESNLNRKRKKEQPKSSQANPGR K S W R K R 0 1 2 0 0 1 1 0 0 0 1 1 0 0 1 2 0 1 0 0 0 0 11 1 1357.6739 P42695;G3V1A9;E9PKK4 P42695 150 160 NCAPD3 Condensin-2 complex subunit D3 yes no 3 0.0015339 54.471 2 0.81919 0.89909 36.69 2 Median 0.81919 0.89909 36.69 2 0 Median NaN NaN NaN 0 0 Median 24225000 10516000 13709000 24225000 10516000 13709000 0 0 0 12696 1565 13047 33470;33471 52149;52150 52149 1 SWQDELAQQAEEGSAR ______________________________ WQDELAQQAEEGSARLREMLSVGLGFLRTE R S W A R L 3 1 0 1 0 3 3 1 0 0 1 0 0 0 0 2 0 1 0 0 0 0 16 0 1803.8024 A0A024R9D2;Q86UE4 A0A024R9D2 5 20 MTDH Protein LYRIC yes no 2 0.00023416 81.431 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12697 275 13048 33472;33473;33474 52151;52152;52153 52152 3 SWSNIPFITVPLSR FRSHCIQPSVIRHVRSWSNIPFITVPLSRT RSWSNIPFITVPLSRTHGKSFAHRSELKHA R S W S R T 0 1 1 0 0 0 0 0 0 2 1 0 0 1 2 3 1 1 0 1 0 0 14 0 1615.8722 P54886 P54886 42 55 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.00012949 80.245 2 1.8943 1.9996 4.0703 2 Median 1.8943 1.9996 4.0703 2 0 Median NaN NaN NaN 0 0 Median 8013700 2925500 5088200 8013700 2925500 5088200 0 0 0 12698 1611 13049 33475;33476 52154;52155;52156;52157 52154 4 SWSVPVIR VSNMSRLARQRLLGRSWSVPVIRHLFAPLK RQRLLGRSWSVPVIRHLFAPLKEYFACV__ R S W I R H 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 2 0 1 0 2 0 0 8 0 942.5287 Q9Y6K1;A0A0C4DG02;Q8WVA9;Q6PJ37;Q9UBC3;B3KM53 Q9Y6K1 892 899 DNMT3A;DNMT3B DNA (cytosine-5)-methyltransferase 3A;DNA (cytosine-5)-methyltransferase 3B no no 2 0.01006 76.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12699 2153;2097 13050 33477 52158 52158 1 SWTAADTAAQLTQR AYDGKDYIALNEDLRSWTAADTAAQLTQRK RSWTAADTAAQLTQRKLEAARAAEQLRAYL R S W Q R K 4 1 0 1 0 2 0 0 0 0 1 0 0 0 0 1 3 1 0 0 0 0 14 0 1518.7427 M9P9U0;A0A0A7C8J0;G1ENK8 M9P9U0 131 144 HLA-C;HLA-B yes no 2 0.0001854 85.813 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5819200 5819200 0 5819200 5819200 0 0 0 0 12700 496 13051 33478 52159 52159 1 SYCAEIAHNVSSK VHNVKELEVLLMCNKSYCAEIAHNVSSKNR NKSYCAEIAHNVSSKNRKAIVERAAQLAIR K S Y S K N 2 0 1 0 1 0 1 0 1 1 0 1 0 0 0 3 0 0 1 1 0 0 13 0 1464.6667 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 94 106 RPL32 60S ribosomal protein L32 yes no 2;3 2.2474E-30 170.4 4 4 0.8098 0.81602 23.056 8 Median 0.84645 0.9692 1.5486 4 0 Median 0.76082 0.63124 6.2487 4 0 Median 1286200000 706350000 579830000 1020300000 554360000 465950000 265880000 152000000 113890000 12701 112 13052 33479;33480;33481;33482;33483;33484;33485;33486 52160;52161;52162;52163;52164;52165;52166;52167;52168;52169;52170;52171;52172;52173;52174;52175 52165 16 SYCCEHDLGAASVR EHQDGTAFSCTPDGRSYCCEHDLGAASVRS RSYCCEHDLGAASVRSTKTEKPPPEPGKPK R S Y V R S 2 1 0 1 2 0 1 1 1 0 1 0 0 0 0 2 0 0 1 1 0 0 14 0 1623.677 O96028 O96028 1321 1334 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2;3 4.7991E-05 75.764 2 4 1.6808 1.4325 45.856 6 Median 0.61863 0.63351 27.016 2 0 Median 1.7342 1.4703 5.7022 4 0 Median 55647000 27146000 28501000 32574000 18682000 13892000 23073000 8463700 14609000 12702 1435 13053 33487;33488;33489;33490;33491;33492 52176;52177;52178;52179;52180;52181;52182;52183 52177 7 SYCSNLVR MHFGAITCAMGIRFKSYCSNLVRTLMVDPS AMGIRFKSYCSNLVRTLMVDPSQEVQENYN K S Y V R T 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 8 0 997.46511 Q9Y5B9;Q0VGA3 Q9Y5B9 281 288 SUPT16H FACT complex subunit SPT16 yes no 2 0.0058564 89.142 1 2 0.98734 0.80437 16.698 3 Median 0.59734 0.6111 NaN 1 0 Median 0.99767 0.81528 1.9053 2 0 Median 48614000 27258000 21356000 26340000 15883000 10457000 22274000 11375000 10899000 12703 2148 13054 33493;33494;33495 52184;52185;52186;52187;52188 52184 5 SYDDAESLK EINNIIKIVGLQYKKSYDDAESLKTLRYGK GLQYKKSYDDAESLKTLRYGKIMIMTDQDQ K S Y L K T 1 0 0 2 0 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 9 0 1026.4506 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 514 522 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.015831 54.416 2 1.0603 0.84855 6.8309 2 Median NaN NaN NaN 0 0 Median 1.0603 0.84855 6.8309 2 0 Median 25014000 11772000 13241000 0 0 0 25014000 11772000 13241000 12704 1679 13055 33496;33497 52189;52190;52191 52189 3 SYDSYEILGK VKQILSKVMEARRSKSYDSYEILGKFVGKD ARRSKSYDSYEILGKFVGKDQVTKLILPLK K S Y G K F 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 2 0 0 2 0 0 0 10 0 1173.5554 O75691 O75691 1961 1970 UTP20 Small subunit processome component 20 homolog yes yes 2 0.011471 51.949 2 1.2987 1.0459 2.7582 2 Median NaN NaN NaN 0 0 Median 1.2987 1.0459 2.7582 2 0 Median 10331000 4155500 6175900 0 0 0 10331000 4155500 6175900 12705 1412 13056 33498;33499 52192;52193 52193 2 SYEALVQHVIEDHER EESSIHCKRCLFMPKSYEALVQHVIEDHER SYEALVQHVIEDHERIGYQVTAMIGHTNVV K S Y E R I 1 1 0 1 0 1 3 0 2 1 1 0 0 0 0 1 0 0 1 2 0 0 15 0 1823.8802 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 232 246 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 5.7206E-08 108.89 2 1.6709 1.3721 4.8587 2 Median NaN NaN NaN 0 0 Median 1.6709 1.3721 4.8587 2 0 Median 24062000 9048800 15013000 0 0 0 24062000 9048800 15013000 12706 878 13057 33500;33501 52194;52195 52195 2 SYELPDGQVITIGNER EQEMATAASSSSLEKSYELPDGQVITIGNE YELPDGQVITIGNERFRCPEALFQPSFLGM K S Y E R F 0 1 1 1 0 1 2 2 0 2 1 0 0 0 1 1 1 0 1 1 0 0 16 0 1789.8846 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q13707;B4DUI8;Q562R1;B3KPP5;K4EQ44;K4EP00;K4ENJ5;G8FSY7;A0A173GMX0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;Q6S8J3;A5A3E0;F1BXA6;A4UCT3;A5GZ75;Q9BYX7;P63261;B4E3A4;B4DVQ0;V9HVZ7 P63261 239 254 ACTA2;ACTG2;ACTA1;ACTC1;ACTBL2;ACTB;PS1TP5BP1;ACTG1;POTEE;POTEF;POTEKP;HEL-176 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 1.3674E-24 141.13 7 6 2.2043 2.0705 31.381 11 Median 1.7667 2.1196 39.096 6 0 Median 2.3487 2.0625 16.418 5 0 Median 14592000000 5183200000 9408800000 11915000000 4374700000 7540600000 2676700000 808500000 1868200000 12707 1624;1656;1100;2186 13058 33502;33503;33504;33505;33506;33507;33508;33509;33510;33511;33512;33513;33514 52196;52197;52198;52199;52200;52201;52202;52203;52204;52205;52206;52207;52208;52209;52210;52211;52212;52213;52214;52215;52216;52217;52218;52219;52220;52221;52222;52223;52224;52225;52226;52227 52202 32 SYESQIEVMAAEVAK TSYKQQLEAVNEAIKSYESQIEVMAAEVAK SYESQIEVMAAEVAKNKESVNKAQEEVTKQ K S Y A K N 3 0 0 0 0 1 3 0 0 1 0 1 1 0 0 2 0 0 1 2 0 0 15 0 1653.792 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 849 863 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 6.3494E-39 169.89 6 7 1.1413 1.1932 22.233 10 Median 1.0923 1.229 2.8123 4 0 Median 1.2685 1.0053 29.569 6 0 Median 402440000 182250000 220200000 295830000 143350000 152480000 106610000 38897000 67716000 12708 69 13059;13060 33515;33516;33517;33518;33519;33520;33521;33522;33523;33524;33525;33526;33527 52228;52229;52230;52231;52232;52233;52234;52235;52236;52237;52238;52239;52240;52241;52242;52243;52244;52245;52246;52247;52248;52249 52234 42 22 SYETLVDFDNHLDDIR WPEAQRISASLLDSRSYETLVDFDNHLDDI YETLVDFDNHLDDIRNDWTNPEINKAVLHL R S Y I R N 0 1 1 4 0 0 1 0 1 1 2 0 0 1 0 1 1 0 1 1 0 0 16 0 1950.8959 M0R1B0;Q53Y03;O43402 M0R1B0 69 84 EMC8;COX4NB ER membrane protein complex subunit 8 yes no 3 8.5871E-05 63.682 1 0.88973 0.89717 NaN 1 Median 0.88973 0.89717 NaN 1 0 Median NaN NaN NaN 0 0 Median 10495000 6165000 4329800 10495000 6165000 4329800 0 0 0 12709 1355 13061 33528 52250 52250 1 SYGEEDIPFYSSSTGK RSNMFFGLTPLYGVRSYGEEDIPFYSSSTG YGEEDIPFYSSSTGKKRGKRSAEGQVDGAD R S Y G K K 0 0 0 1 0 0 2 2 0 1 0 1 0 1 1 4 1 0 2 0 0 0 16 0 1765.7683 Q03164 Q03164 2639 2654 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 1.2378E-08 105.65 2 2 1.3876 1.267 34.228 4 Median 0.91487 0.93261 11.487 2 0 Median 2.0573 1.6622 6.5432 2 0 Median 44478000 20504000 23974000 29340000 15178000 14162000 15138000 5326300 9811500 12710 1680 13062 33529;33530;33531;33532 52251;52252;52253;52254;52255;52256;52257;52258 52252 8 SYGLGSEQR QSQSVKQLLPSGNGRSYGLGSEQRSQAPAR PSGNGRSYGLGSEQRSQAPARYSLQSANAS R S Y Q R S 0 1 0 0 0 1 1 2 0 0 1 0 0 0 0 2 0 0 1 0 0 0 9 0 995.46722 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 377 385 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00017767 107.29 2 1 0.74128 0.78802 36.408 3 Median 0.72825 0.78557 0.44113 2 0 Median 1.7151 1.4759 NaN 1 0 Median 83382000 48797000 34585000 75857000 45926000 29931000 7524500 2871000 4653400 12711 878 13063 33533;33534;33535 52259;52260;52261;52262;52263 52259 5 SYGPAPGAGHVQEESNLSLQALESR ELPTCMYRLPNVHGRSYGPAPGAGHVQEES VQEESNLSLQALESRQDDILKRLYELKAAV R S Y S R Q 3 1 1 0 0 2 3 3 1 0 3 0 0 0 2 4 0 0 1 1 0 0 25 0 2596.2518 B2R7M3;A0A024QZY1;Q13155 B2R7M3 34 58 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 3 1.8882E-21 108.64 2 2 1.1587 1.0625 40.887 4 Median 1.4354 1.5123 8.9202 2 0 Median 0.89257 0.75236 7.8124 2 0 Median 84906000 35001000 49905000 68495000 26585000 41910000 16411000 8415700 7995100 12712 32 13064 33536;33537;33538;33539 52264;52265;52266;52267;52268;52269;52270;52271;52272;52273;52274;52275;52276 52269 13 SYGRPPPDVEGMTSLK ______________________________ YGRPPPDVEGMTSLKVDNLTYRTSPDTLRR M S Y L K V 0 1 0 1 0 0 1 2 0 0 1 1 1 0 3 2 1 0 1 1 0 0 16 1 1732.8454 J3QL05;J3KP15;Q8NAK9;Q53FN0;A0A024R8U5;Q01130;B3KX15;Q6NXQ0;Q8N220;B3KVY2;B3KUF7 J3QL05 2 17 SRSF2;SFRS2 Serine/arginine-rich splicing factor 2 yes no 2 3.7773E-05 70.622 2 2.5142 2.9519 1.6695 2 Median 2.5142 2.9519 1.6695 2 0 Median NaN NaN NaN 0 0 Median 82803000 25059000 57744000 82803000 25059000 57744000 0 0 0 12713 258 13065 33540;33541 52277;52278 52277 193 2 SYIDFEIEQEETER AISQPRLDMPEVLWKSYIDFEIEQEETERT KSYIDFEIEQEETERTRNLYRRLLQRTQHV K S Y E R T 0 1 0 1 0 1 5 0 0 2 0 0 0 1 0 1 1 0 1 0 0 0 14 0 1786.7897 Q69YP1;Q5JY65;Q9BZJ0;Q8IXG0 Q69YP1 561 574 DKFZp762M013;CRNKL1;crn Crooked neck-like protein 1 yes no 2 0.0024097 63.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12714 1810 13066 33542 52279 52279 1 SYLEFSEDSVQVPR FRIYGETPEACRQARSYLEFSEDSVQVPRN RSYLEFSEDSVQVPRNLVGKVIGKNGKVIQ R S Y P R N 0 1 0 1 0 1 2 0 0 0 1 0 0 1 1 3 0 0 1 2 0 0 14 0 1654.7839 P51116 P51116 287 300 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 2.5559E-06 124.1 1 2 1.3375 1.1661 11.021 3 Median 1.2195 1.3484 NaN 1 0 Median 1.3532 1.1255 5.0156 2 0 Median 63170000 32364000 30806000 42000000 23301000 18698000 21170000 9062600 12108000 12715 1593 13067 33543;33544;33545 52280;52281;52282;52283;52284;52285 52281 6 SYLEGSSDNQLK DSYSSRTSSQSKGNKSYLEGSSDNQLKDSE GNKSYLEGSSDNQLKDSESTPVDDRISLEQ K S Y L K D 0 0 1 1 0 1 1 1 0 0 2 1 0 0 0 3 0 0 1 0 0 0 12 0 1339.6256 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6;E9PJ60 Q8TDR3 672 683 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 2 0.029594 47.706 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6556100 0 6556100 6556100 0 6556100 0 0 0 12716 1901 13068 33546 52286 52286 1 SYLENPAFMLLDLK VIDGATMSRFSNLWKSYLENPAFMLLDLK_ KSYLENPAFMLLDLK_______________ K S Y L K - 1 0 1 1 0 0 1 0 0 0 4 1 1 1 1 1 0 0 1 0 0 0 14 0 1652.8484 P11182;B4E1Q7 P11182 469 482 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 2 0.00035842 58.676 2 1.6679 1.7925 NaN 1 Median 1.6679 1.7925 NaN 1 0 Median NaN NaN NaN 0 0 Median 6354200 1470900 4883300 6354200 1470900 4883300 0 0 0 12717 1469 13069 33547;33548 52287;52288 52288 1183 2 SYLFNIMDTPGHVNFSDEVTAGLR KSTPVTVVLPDTKGKSYLFNIMDTPGHVNF PGHVNFSDEVTAGLRISDGVVLFIDAAEGV K S Y L R I 1 1 2 2 0 0 1 2 1 1 2 0 1 2 1 2 2 0 1 2 0 0 24 0 2682.2748 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 148 171 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 3.9433E-28 122.39 2 1.3116 1.3816 2.7601 2 Median 1.3116 1.3816 2.7601 2 0 Median NaN NaN NaN 0 0 Median 68319000 30265000 38053000 68319000 30265000 38053000 0 0 0 12718 794 13070 33549;33550 52289;52290;52291;52292;52293;52294 52294 640 6 SYLSGGAGAAGGGGADPGNK GGRVKKGGGKKSGKKSYLSGGAGAAGGGGA GAGAAGGGGADPGNKKWEQKQVQIKTLEGE K S Y N K K 4 0 1 1 0 0 0 8 0 0 1 1 0 0 1 2 0 0 1 0 0 0 20 0 1662.7598 P25490;H0YJV7;H0YJU4 P25490 184 203 YY1 Transcriptional repressor protein YY1 yes no 2 4.3641E-07 83.499 1 2 0.9387 0.82684 8.4143 3 Median 0.78486 0.82684 NaN 1 0 Median 1.0025 0.81043 11.787 2 0 Median 35778000 18871000 16907000 15435000 9732000 5702600 20344000 9139200 11204000 12719 1516 13071 33551;33552;33553 52295;52296;52297;52298 52298 4 SYLYQILQGIVFCHSR DSIPPGQYMDSSLVKSYLYQILQGIVFCHS YLYQILQGIVFCHSRRVLHRDLKPQNLLID K S Y S R R 0 1 0 0 1 2 0 1 1 2 2 0 0 1 0 2 0 0 2 1 0 0 16 0 1983.0037 A0A024QZP7;P06493;A0A087WZZ9;I6L9I5;E5RIU6 A0A024QZP7 107 122 CDC2;CDK1 Cyclin-dependent kinase 1 yes no 3 4.5743E-07 87.148 2 1.2644 1.2766 5.4177 2 Median 1.2644 1.2766 5.4177 2 0 Median NaN NaN NaN 0 0 Median 21038000 9266700 11771000 21038000 9266700 11771000 0 0 0 12720 25 13072 33554;33555 52299;52300;52301;52302 52300 4 SYNDELQFLEK ______________________________ ______________________________ R S Y E K I 0 0 1 1 0 1 2 0 0 0 2 1 0 1 0 1 0 0 1 0 0 0 11 0 1384.6511 Q9Y3I0;B4DNA0;B4DNG5;B4DXF1 Q9Y3I0 4 14 RTCB tRNA-splicing ligase RtcB homolog yes no 2 5.7494E-16 132.01 2 2 1.3538 1.093 3.6743 2 Median NaN NaN NaN 0 0 Median 1.3538 1.093 3.6743 2 0 Median 50218000 41656000 8562000 34765000 34765000 0 15453000 6890800 8562000 12721 2137 13073 33556;33557;33558;33559 52303;52304;52305;52306 52304 4 SYPLDLEGGSEYK PFVTCGDLSSYDSDRSYPLDLEGGSEYKYT DRSYPLDLEGGSEYKYTPPTQPPISPPYQE R S Y Y K Y 0 0 0 1 0 0 2 2 0 0 2 1 0 0 1 2 0 0 2 0 0 0 13 0 1456.6722 B7Z4K4;B3KN91;A0A024QYX5;A0A0S2Z5C9;Q9UET6 B7Z4K4 112 124 FTSJ1 Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase yes no 2 0.00025711 67.726 1 1 1.4507 1.3654 35.859 2 Median 1.7447 1.7594 NaN 1 0 Median 1.2062 1.0596 NaN 1 0 Median 8447000 2588000 5859100 7710700 2280000 5430700 736360 307970 428390 12722 8 13074 33560;33561 52307;52308;52309 52307 3 SYQALALWK SEKISLQAIQQLVRKSYQALALWKLLCEHQ QQLVRKSYQALALWKLLCEHQFTIIVAELQ K S Y W K L 2 0 0 0 0 1 0 0 0 0 2 1 0 0 0 1 0 1 1 0 0 0 9 0 1078.5811 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 750 758 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.024092 55.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3014600 0 3014600 3014600 0 3014600 0 0 0 12723 39 13075 33562 52310 52310 1 SYQSFQTFR NLIQSTLALSDSQMKSYQSFQTFRLYREYK SDSQMKSYQSFQTFRLYREYKDHVLVKAFM K S Y F R L 0 1 0 0 0 2 0 0 0 0 0 0 0 2 0 2 1 0 1 0 0 0 9 0 1162.5407 Q6AHZ7;Q12789;Q6AWA4;I3L1Z3 Q6AHZ7 1446 1454 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0014178 85.67 2 1.0484 1.0552 9.4354 2 Median 1.0484 1.0552 9.4354 2 0 Median NaN NaN NaN 0 0 Median 34288000 16719000 17570000 34288000 16719000 17570000 0 0 0 12724 1699 13076 33563;33564 52311;52312;52313 52313 3 SYSEDDIHR EFEWNLKSGRVFIIKSYSEDDIHRSIKYSI RVFIIKSYSEDDIHRSIKYSIWCSTEHGNK K S Y H R S 0 1 0 2 0 0 1 0 1 1 0 0 0 0 0 2 0 0 1 0 0 0 9 0 1120.4785 B4DT65;B3KTL8;Q9BYJ9;Q658Z6;Q8NA80;Q8N3V9;A0A024R7W5;Q96MZ5;B5BU99;A0A087X0Q1;B4DPX9;A0A087WY31;Q9Y5A9;Q7Z739 B4DT65 346 354 YTHDF1;DKFZp451J085;DKFZp451A052;YTHDF3;YTHDF2 YTH domain-containing family protein 1;YTH domain-containing family protein 2;YTH domain-containing family protein 3 yes no 2 0.00016523 94.302 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1755100 0 1755100 1755100 0 1755100 0 0 0 12725 944 13077 33565 52314 52314 1 SYSLLFR VSSNEFEPSNSHMVKSYSLLFRVTRPGRRE PSNSHMVKSYSLLFRVTRPGRREFNGMING K S Y F R V 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 2 0 0 1 0 0 0 7 0 884.4756 J3QQW9;Q15022;A8K1U9 J3QQW9 224 230 SUZ12 Polycomb protein SUZ12 yes no 2 0.023524 90.986 2 1.1049 1.1673 2.1635 2 Median 1.1049 1.1673 2.1635 2 0 Median NaN NaN NaN 0 0 Median 62982000 31782000 31200000 62982000 31782000 31200000 0 0 0 12726 1336 13078 33566;33567 52315;52316 52315 2 SYSMIVNNLLK TERSFDLLVKNLNGKSYSMIVNNLLKPISV LNGKSYSMIVNNLLKPISVEGSSKKVKTDT K S Y L K P 0 0 2 0 0 0 0 0 0 1 2 1 1 0 0 2 0 0 1 1 0 0 11 0 1280.6799 Q6NVY0;A0A024R904;Q9HB71 Q6NVY0 124 134 CACYBP Calcyclin-binding protein yes no 2 0.012486 47.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4798300 0 4798300 4798300 0 4798300 0 0 0 12727 267 13079 33568 52317 52317 205 1 SYSPSDLVELVAR RGTGLYELWKSGRYKSYSPSDLVELVARIL YKSYSPSDLVELVARILALVPPWTRVYRVQ K S Y A R I 1 1 0 1 0 0 1 0 0 0 2 0 0 0 1 3 0 0 1 2 0 0 13 0 1434.7355 Q9H9T3;B4DXV1;B4DPB7;B4DKA4 Q9H9T3 339 351 ELP3 Elongator complex protein 3 yes no 2 0.00016502 72.2 2 1.6198 1.6336 11.047 2 Median 1.6198 1.6336 11.047 2 0 Median NaN NaN NaN 0 0 Median 14447000 6852400 7595000 14447000 6852400 7595000 0 0 0 12728 2047 13080 33569;33570 52318;52319 52318 2 SYSQQLFLALK KKYGKDVGLHIKAVRSYSQQLFLALKLLKR KAVRSYSQQLFLALKLLKRCNILHADIKPD R S Y L K L 1 0 0 0 0 2 0 0 0 0 3 1 0 1 0 2 0 0 1 0 0 0 11 0 1296.7078 B4DZQ5;A0A024QZY5;Q13523;H0YDJ3 B4DZQ5 780 790 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes no 2 0.035945 48.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 792340 792340 0 0 0 0 792340 792340 0 12729 33 13081 33571 52320 52320 1 SYSSGGEDGYVR HFGPINSVAFHPDGKSYSSGGEDGYVRIHY DGKSYSSGGEDGYVRIHYFDPQYFEFEFEA K S Y V R I 0 1 0 1 0 0 1 3 0 0 0 0 0 0 0 3 0 0 2 1 0 0 12 0 1275.5368 Q5U0F4;Q53HU7;Q13347;Q9P1D9 Q5U0F4 299 310 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 2 1.6138E-05 105.2 2 2 1.5676 1.357 13.674 4 Median 1.3839 1.3949 23.416 2 0 Median 1.5676 1.357 2.2327 2 0 Median 38006000 15300000 22706000 34345000 13938000 20407000 3661300 1362400 2298900 12730 1711 13082 33572;33573;33574;33575 52321;52322;52323;52324;52325;52326 52322 6 SYVDLYVK KVMFNGKKLPVNGFRSYVDLYVKDKLDETG LPVNGFRSYVDLYVKDKLDETGVALKVIHE R S Y V K D 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 2 2 0 0 8 0 985.51205 Q71UH4;Q02880;E9PCY5 Q71UH4 262 269 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.051374 43.246 1 1.116 0.90874 NaN 1 Median NaN NaN NaN 0 0 Median 1.116 0.90874 NaN 1 0 Median 7347600 3427200 3920500 0 0 0 7347600 3427200 3920500 12731 1679 13083 33576 52327 52327 1 SYVDMYLK KVFLNGNKLPVKGFRSYVDMYLKDKLDETG LPVKGFRSYVDMYLKDKLDETGNSLKVIHE R S Y L K D 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0 0 2 1 0 0 8 0 1017.4841 P11388 P11388 269 276 TOP2A DNA topoisomerase 2-alpha yes yes 1;2 0.0043994 75.854 5 3 0.92517 1.064 16.726 7 Median 0.91534 1.0662 1.7708 4 0 Median 0.97936 0.81347 24.987 3 0 Median 1056800000 552770000 504040000 984000000 517970000 466020000 72812000 34792000 38020000 12732 1471 13084;13085 33577;33578;33579;33580;33581;33582;33583;33584 52328;52329;52330;52331;52332;52333;52334;52335;52336;52337;52338;52339;52340;52341;52342;52343 52336 1212 16 SYVDPSTDER NKDTHDQLSEPSEVRSYVDPSTDERLSYTQ PSEVRSYVDPSTDERLSYTQLLRRCRRDDG R S Y E R L 0 1 0 2 0 0 1 0 0 0 0 0 0 0 1 2 1 0 1 1 0 0 10 0 1167.5044 Q15149;D3DWL0;Q96IE3 Q15149 3982 3991 PLEC;PLEC1 Plectin yes no 2 0.00018094 94.692 2 2 1.9947 2.2233 6.322 3 Plateau 1.9794 2.1984 4.757 2 0 Median 2.4151 2.0037 NaN 1 0 Median 120950000 39211000 81742000 111310000 37488000 73821000 9644400 1723600 7920800 12733 1754 13086 33585;33586;33587;33588 52344;52345;52346;52347;52348 52346 5 TAAALAPASLTSAR RSAHATAPVNIAGSRTAAALAPASLTSARM RTAAALAPASLTSARMAPALSGANLTSPRV R T A A R M 6 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 2 0 0 0 0 0 14 0 1299.7147 A0A140VK53;Q9UQ35;O60382 A0A140VK53 2357 2370 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.0027117 60.434 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12734 619 13087 33589;33590 52349;52350 52350 2 TAAENEFVTLK VEDLKNKYEDEINKRTAAENEFVTLKKDVD INKRTAAENEFVTLKKDVDAAYMNKVELQA R T A L K K 2 0 1 0 0 0 2 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 11 0 1221.6241 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259 B2R853 261 271 KRT6C;KRT6A Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 2.7356E-06 99.568 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6215200 6215200 0 0 0 0 6215200 6215200 0 + 12735 859;1154 13088 33591;33592 52351;52352 52352 2 TAAENEFVVLK VEDFKNKYEDEINHRTAAENEFVVLKKDVD INHRTAAENEFVVLKKDVDAAYMSKVELEA R T A L K K 2 0 1 0 0 0 2 0 0 0 1 1 0 1 0 0 1 0 0 2 0 0 11 0 1219.6449 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 188 198 KRT7 Keratin, type II cytoskeletal 7 no no 2 7.3902E-08 113.62 2 2 0.97282 0.94933 20.603 4 Median 0.97282 1.1121 3.3388 2 0 Median 0.9841 0.78607 7.6448 2 0 Median 369400000 183440000 185960000 344230000 170640000 173590000 25172000 12801000 12371000 + 12736 1171;1158 13089 33593;33594;33595;33596 52353;52354;52355;52356;52357;52358;52359;52360;52361;52362;52363 52358 11 TAAFALPVLER LGKDICACAATGTGKTAAFALPVLERLIYK GTGKTAAFALPVLERLIYKPRQAPVTRVLV K T A E R L 3 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 11 0 1186.671 B3GQE6;A0A087X059;B7Z6D5;Q96GQ7 B3GQE6 238 248 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 1.548E-10 135.55 2 2 0.93467 0.9261 2.8408 4 Median 0.80158 0.90806 1.5998 2 0 Median 1.0983 0.94709 1.9851 2 0 Median 260360000 139300000 121050000 194550000 107930000 86619000 65810000 31375000 34434000 12737 899;1099 13090 33597;33598;33599;33600 52364;52365;52366;52367;52368;52369;52370;52371 52365 8 TAAGEYDSVSESEDEEMLEIR IMKKLEELEKEEELRTAAGEYDSVSESEDE DSVSESEDEEMLEIRQLAKQIREKKKLKIL R T A I R Q 2 1 0 2 0 0 6 1 0 1 1 0 1 0 0 3 1 0 1 1 0 0 21 0 2359.0009 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 459 479 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 4.624E-09 74.475 2 3.1875 3.1646 NaN 1 Median 3.1875 3.1646 NaN 1 0 Median NaN NaN NaN 0 0 Median 25248000 5622100 19626000 25248000 5622100 19626000 0 0 0 12738 1183 13091 33601;33602 52372;52373 52372 901 2 TAANLVVETGQDGVQIR AKEFTNHWWNELFNKTAANLVVETGQDGVQ ANLVVETGQDGVQIRSLSKETTRYNHPKPN K T A I R S 2 1 1 1 0 2 1 2 0 1 1 0 0 0 0 0 2 0 0 3 0 0 17 0 1769.9272 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 72 88 GPATCH4 G patch domain-containing protein 4 yes no 2 3.0786E-34 155.66 2 2 1.426 1.4023 22.075 4 Median 1.0287 1.1667 0.38881 2 0 Median 1.9728 1.7088 2.3351 2 0 Median 351040000 159910000 191130000 255810000 128690000 127120000 95232000 31218000 64014000 12739 1820 13092 33603;33604;33605;33606 52374;52375;52376;52377;52378;52379;52380;52381 52378 8 TAAPSPSLLYK SWASDHNYNAVKPEKTAAPSPSLLYKSTKE KPEKTAAPSPSLLYKSTKEDRRSEEKAAAM K T A Y K S 2 0 0 0 0 0 0 0 0 0 2 1 0 0 2 2 1 0 1 0 0 0 11 0 1146.6285 Q9BTC0 Q9BTC0 519 529 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00047771 75.378 2 1 1.3953 1.2982 18.708 2 Median 1.0682 1.1373 NaN 1 0 Median 1.8226 1.4818 NaN 1 0 Median 28700000 9693000 19007000 24201000 8349100 15852000 4499100 1344000 3155200 12740 2002 13093 33607;33608;33609 52382;52383;52384 52382 3 TAAPSVRPEK ______________________________ RGAGRTAAPSVRPEKRRSEPELEPEPEPEP R T A E K R 2 1 0 0 0 0 1 0 0 0 0 1 0 0 2 1 1 0 0 1 0 0 10 1 1054.5771 Q14137;B2RDN4;A8K3R2;A0A075B729 Q14137 10 19 BOP1 Ribosome biogenesis protein BOP1 yes no 2;3 2.4314E-15 162.88 4 0.86711 1.0235 4.9338 4 Median 0.86711 1.0235 4.9338 4 0 Median NaN NaN NaN 0 0 Median 296340000 156100000 140240000 296340000 156100000 140240000 0 0 0 12741 1726 13094 33610;33611;33612;33613 52385;52386;52387;52388;52389;52390;52391 52385 7 TAAPTTASAAPQGPLR PEGRTVAFPSTHPPRTAAPTTASAAPQGPL AAPTTASAAPQGPLRGRPPIATFSANPEAK R T A L R G 5 1 0 0 0 1 0 1 0 0 1 0 0 0 3 1 3 0 0 0 0 0 16 0 1508.7947 Q96L91;A7E2D7 Q96L91 1488 1503 EP400 E1A-binding protein p400 yes no 2 0.00064973 48.568 1 0.71162 0.70793 NaN 1 Median 0.71162 0.70793 NaN 1 0 Median NaN NaN NaN 0 0 Median 8225100 3781400 4443800 8225100 3781400 4443800 0 0 0 12742 1977 13095 33614 52392 52392 1 TAASFDECSTAGVFLSTLHCQDYR SEADRKCEIDPMFQKTAASFDECSTAGVFL TAGVFLSTLHCQDYRSELLFPSDVQTLSTG K T A Y R S 3 1 0 2 2 1 1 1 1 0 2 0 0 2 0 3 3 0 1 1 0 0 24 0 2735.1956 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470;C9JZP1 A8K4T8 248 271 NCAPH Condensin complex subunit 2 yes no 3 1.4872E-27 116.24 2 2 1.1115 1.538 33.717 4 Linear 0.75506 0.79612 4.0046 2 0 Median 1.6422 1.4255 1.0611 2 0 Median 218650000 92251000 126400000 60063000 32152000 27911000 158590000 60099000 98488000 12743 740 13096 33615;33616;33617;33618 52393;52394;52395;52396;52397;52398;52399;52400 52396 8 TAASGIPYHSEVPVSLK CVINNQEMGFYKDAKTAASGIPYHSEVPVS ASGIPYHSEVPVSLKEAVCEVALDYKKKKH K T A L K E 2 0 0 0 0 0 1 1 1 1 1 1 0 0 2 3 1 0 1 2 0 0 17 0 1754.9203 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;B4DIF8 D6W5C0 2156 2172 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.0075104 38.613 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25914000 0 25914000 20717000 0 20717000 5197100 0 5197100 12744 415 13097 33619;33620;33621;33622 52401;52402;52403;52404 52402 4 TAAYAIPMLQLLLHR EGKDLLARARTGSGKTAAYAIPMLQLLLHR TAAYAIPMLQLLLHRKATGPVVEQAVRGLV K T A H R K 3 1 0 0 0 1 0 0 1 1 4 0 1 0 1 0 1 0 1 0 0 0 15 0 1709.9651 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8;F8WEI3 Q9NY93 58 72 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 0.000227 49.298 1 1.6956 1.7761 NaN 1 Median 1.6956 1.7761 NaN 1 0 Median NaN NaN NaN 0 0 Median 12535000 4483700 8050900 12535000 4483700 8050900 0 0 0 12745 2081 13098 33623 52405 52405 1919 1 TAAYAIPMLQLLLHRK EGKDLLARARTGSGKTAAYAIPMLQLLLHR AAYAIPMLQLLLHRKATGPVVEQAVRGLVL K T A R K A 3 1 0 0 0 1 0 0 1 1 4 1 1 0 1 0 1 0 1 0 0 0 16 1 1838.06 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8;F8WEI3 Q9NY93 58 73 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 0.00083362 37.092 2 1.3368 1.1714 2.6553 2 Median NaN NaN NaN 0 0 Median 1.3368 1.1714 2.6553 2 0 Median 5725900 2419300 3306600 0 0 0 5725900 2419300 3306600 12746 2081 13099 33624;33625 52406;52407 52407 2 TAAYGHFGR VIVRDLDLKKPIYQRTAAYGHFGRDSFPWE KPIYQRTAAYGHFGRDSFPWEVPKKLKY__ R T A G R D 2 1 0 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 1 0 0 0 9 0 978.46716 A0A140VJP5;P31153;B4E1K2 A0A140VJP5 374 382 MAT2A S-adenosylmethionine synthase isoform type-2 yes no 2;3 0.001453 85.212 4 1.9624 2.1084 4.9014 4 Median 1.9624 2.1084 4.9014 4 0 Median NaN NaN NaN 0 0 Median 112760000 37851000 74914000 112760000 37851000 74914000 0 0 0 12747 606 13100 33626;33627;33628;33629 52408;52409;52410;52411;52412;52413;52414 52414 7 TADSSSSEDEEEYVVEK ______________________________ DSSSSEDEEEYVVEKVLDRRVVKGQVEYLL R T A E K V 1 0 0 2 0 0 5 0 0 0 0 1 0 0 0 4 1 0 1 2 0 0 17 0 1902.7854 V9HWG0;P45973;Q6I9T7;F8VNY3 V9HWG0 8 24 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 1.7058E-05 84.297 1 0.93984 0.94136 NaN 1 Median 0.93984 0.94136 NaN 1 0 Median NaN NaN NaN 0 0 Median 15719000 8052900 7666300 15719000 8052900 7666300 0 0 0 12748 1568 13101 33630 52415 52415 1 TAEDYSVDENGQR GGQNISMGYFKNEEKTAEDYSVDENGQRWF EKTAEDYSVDENGQRWFCTGDIGEFHPDGC K T A Q R W 1 1 1 2 0 1 2 1 0 0 0 0 0 0 0 1 1 0 1 1 0 0 13 0 1482.6223 Q8TAF6;O60488;B4DH39;H0Y9A0 Q8TAF6 496 508 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 5.4353E-20 150.1 2 1 1.2712 1.3315 27.329 3 Median 1.3978 1.4271 9.8034 2 0 Median 1.028 0.90282 NaN 1 0 Median 23216000 11051000 12165000 21422000 10161000 11260000 1794600 889450 905120 12749 1394 13102 33631;33632;33633 52416;52417;52418;52419;52420;52421 52416 6 TAEEEELAEEK ETDSEEEQEEVNEKKTAEEEELAEEKKKAL NEKKTAEEEELAEEKKKALNVVQSVLQINL K T A E K K 2 0 0 0 0 0 6 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 11 0 1276.5671 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50 A0A024R250 908 918 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 9.8628E-18 160.75 3 1 1.3879 1.291 5.6189 2 Median 1.2417 1.3434 NaN 1 0 Median 1.5512 1.2407 NaN 1 0 Median 82828000 18865000 63963000 75739000 16132000 59606000 7089300 2732500 4356800 12750 104 13103 33634;33635;33636;33637 52422;52423;52424;52425;52426;52427 52425 6 TAEEENPEHVEIQK AEIYEQEYIKLNQQKTAEEENPEHVEIQKM KTAEEENPEHVEIQKMMDSLFLKLDALSNF K T A Q K M 1 0 1 0 0 1 5 0 1 1 0 1 0 0 1 0 1 0 0 1 0 0 14 0 1651.7689 B3KPV5;O00566 B3KPV5 485 498 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2;3 9.0961E-134 263.74 3 2 1.2182 1.1582 28.728 4 Median 1.3369 1.5074 11.622 2 0 Median 1.1814 0.93172 5.1333 2 0 Median 239440000 97702000 141730000 211210000 84633000 126580000 28229000 13070000 15159000 12751 924 13104 33638;33639;33640;33641;33642 52428;52429;52430;52431;52432;52433;52434;52435 52429 8 TAEEVAALIR VWAGQKRLGQLAKWKTAEEVAALIRSLPVE LAKWKTAEEVAALIRSLPVEEQPKQIIVTR K T A I R S 3 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1071.5924 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1841 1850 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00050835 85.731 1 1.0634 1.1569 NaN 1 Median 1.0634 1.1569 NaN 1 0 Median NaN NaN NaN 0 0 Median 28808000 15095000 13713000 28808000 15095000 13713000 0 0 0 12752 1854 13105 33643 52436 52436 1 TAELQEELSGEK KETELQREMHEMAQKTAELQEELSGEKNRL AQKTAELQEELSGEKNRLAGELQLLLEEIK K T A E K N 1 0 0 0 0 1 4 1 0 0 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1332.6409 P49454;Q9UHT7;A0A087WTY4 P49454 2728 2739 CENPF Centromere protein F yes no 2 1.5921E-12 127.42 3 0.70919 0.77911 NaN 1 Median 0.70919 0.77911 NaN 1 0 Median NaN NaN NaN 0 0 Median 41862000 23920000 17942000 41862000 23920000 17942000 0 0 0 12753 1581 13106 33644;33645;33646 52437;52438;52439;52440 52440 4 TAEPLLDK VGRPPGPYTRKMIQKTAEPLLDKESISENP TRKMIQKTAEPLLDKESISENPTLDLPCSI K T A D K E 1 0 0 1 0 0 1 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 8 0 885.48075 Q9Y483;Q96G26;B4DZG1 Q9Y483 417 424 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.03177 51.066 2 1.0939 1.1459 15.289 2 Median 1.0939 1.1459 15.289 2 0 Median NaN NaN NaN 0 0 Median 65793000 27542000 38251000 65793000 27542000 38251000 0 0 0 12754 2143 13107 33647;33648 52441;52442 52442 2 TAESQTPTPSATSFFSGK SEESSHYSTEKESEKTAESQTPTPSATSFF SQTPTPSATSFFSGKSPVTTLLECMHKLGN K T A G K S 2 0 0 0 0 1 1 1 0 0 0 1 0 2 2 4 4 0 0 0 0 0 18 0 1842.8636 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 596 613 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 4.1272E-40 161.76 2 1.7011 1.776 8.0337 2 Median 1.7011 1.776 8.0337 2 0 Median NaN NaN NaN 0 0 Median 63272000 25898000 37374000 63272000 25898000 37374000 0 0 0 12755 5 13108 33649;33650 52443;52444;52445;52446 52446 4 TAFDDAIAELDTLNEDSYK YEIQNAPEQACHLAKTAFDDAIAELDTLNE DAIAELDTLNEDSYKDSTLIMQLLRDNLTL K T A Y K D 3 0 1 4 0 0 2 0 0 1 2 1 0 1 0 1 2 0 1 0 0 0 19 0 2129.9641 B4DE78;B3KNB4;P61981;B4DHC4 B4DE78 159 177 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 2 1.662E-05 89.231 1 3.0524 3.0644 NaN 1 Median 3.0524 3.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median 13718000 3037200 10681000 13718000 3037200 10681000 0 0 0 12756 912 13109 33651 52447 52447 1 TAFDEAIAELDTLNEDSYK YEILNNPELACTLAKTAFDEAIAELDTLNE EAIAELDTLNEDSYKDSTLIMQLLRDNLTL K T A Y K D 3 0 1 3 0 0 3 0 0 1 2 1 0 1 0 1 2 0 1 0 0 0 19 0 2143.9797 P27348;Q53S41;B4DMT8;B4DY04 P27348 194 212 YWHAQ 14-3-3 protein theta yes no 2 1.5462E-05 90.759 2 2.4045 2.4793 1.8614 2 Median 2.4045 2.4793 1.8614 2 0 Median NaN NaN NaN 0 0 Median 32681000 11048000 21633000 32681000 11048000 21633000 0 0 0 12757 1523 13110 33652;33653 52448;52449;52450 52448 3 TAFDEAIAELDTLNEESYK YEILNSPEKACSLAKTAFDEAIAELDTLNE EAIAELDTLNEESYKDSTLIMQLLRDNLTL K T A Y K D 3 0 1 2 0 0 4 0 0 1 2 1 0 1 0 1 2 0 1 0 0 0 19 0 2157.9954 V9HWD6;P31946 V9HWD6 196 214 HEL-S-1;YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 2 2.3956E-05 59.607 2 1.9098 1.9309 23.22 2 Median 1.9098 1.9309 23.22 2 0 Median NaN NaN NaN 0 0 Median 13393000 4376800 9015900 13393000 4376800 9015900 0 0 0 12758 1536 13111 33654;33655 52451;52452;52453 52451 3 TAFDEAIAELDTLSEESYK YEILNSPEKACSLAKTAFDEAIAELDTLSE EAIAELDTLSEESYKDSTLIMQLLRDNLTL K T A Y K D 3 0 0 2 0 0 4 0 0 1 2 1 0 1 0 2 2 0 1 0 0 0 19 0 2130.9845 D0PNI1;P63104;B0AZS6;E7EX29;B7Z2E6;H0YB80;Q2F831 D0PNI1 194 212 YWHAZ 14-3-3 protein zeta/delta yes no 2 1.1291E-16 116.63 2 2.0805 2.1575 3.165 2 Median 2.0805 2.1575 3.165 2 0 Median NaN NaN NaN 0 0 Median 20950000 8638200 12312000 20950000 8638200 12312000 0 0 0 12759 1182 13112 33656;33657 52454;52455;52456;52457;52458 52454 5 TAFFHVCTQNPQDSQWDR KDKKHLDKFSSYHVKTAFFHVCTQNPQDSQ FHVCTQNPQDSQWDRKDLGLCFDNCVTYFL K T A D R K 1 1 1 2 1 3 0 0 1 0 0 0 0 2 1 1 2 1 0 1 0 0 18 0 2235.9756 Q8N884 Q8N884 440 457 MB21D1 Cyclic GMP-AMP synthase yes yes 3 1.0217E-05 64.275 1 1.1523 1.2099 NaN 1 Median 1.1523 1.2099 NaN 1 0 Median NaN NaN NaN 0 0 Median 11843000 6346700 5496400 11843000 6346700 5496400 0 0 0 12760 1914 13113 33658 52459 52459 1 TAFGIISTVK STNCRAALLHGETRKTAFGIISTVKKPRPS GETRKTAFGIISTVKKPRPSEGDEDCLPAS K T A V K K 1 0 0 0 0 0 0 1 0 2 0 1 0 1 0 1 2 0 0 1 0 0 10 0 1035.5964 Q5VU10;P78346 Q5VU10 181 190 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.0019426 71.349 2 1.6849 1.7444 0.14226 2 Median 1.6849 1.7444 0.14226 2 0 Median NaN NaN NaN 0 0 Median 34449000 12330000 22119000 34449000 12330000 22119000 0 0 0 12761 1663 13114 33659;33660 52460;52461 52461 2 TAFQEALDAAGDK ______________________________ SKTAFQEALDAAGDKLVVVDFSATWCGPCK K T A D K L 4 0 0 2 0 1 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 13 0 1335.6307 H9ZYJ2;P10599 H9ZYJ2 9 21 TXN Thioredoxin yes no 2 1.8864E-13 129.89 2 2 1.5234 1.5532 62.939 3 Median 1.6674 1.6729 10.494 2 0 Median 0.72822 0.56666 NaN 1 0 Median 62498000 28423000 34075000 56259000 23829000 32430000 6239200 4594100 1645200 12762 1318 13115 33661;33662;33663;33664 52462;52463;52464;52465;52466;52467 52462 6 TAFVMLLR TWWEKGLPAKEDTGKTAFVMLLRRSLETKT AKEDTGKTAFVMLLRRSLETKTGADVCRLW K T A L R R 1 1 0 0 0 0 0 0 0 0 2 0 1 1 0 0 1 0 0 1 0 0 8 0 949.54191 Q86XI2;B3KRQ2;F8WE06 Q86XI2 165 172 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.019162 57.281 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12763 1887 13116 33665;33666;33667;33668;33669 52468;52469;52470;52471;52472 52471 1733 5 TAFYNEDDSEEEQR KGSEPHMRTRNQGRRTAFYNEDDSEEEQRQ RTAFYNEDDSEEEQRQLLFEDTSLTFGTSS R T A Q R Q 1 1 1 2 0 1 4 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 14 0 1731.686 Q8WWQ0;Q9NWP3 Q8WWQ0 1775 1788 PHIP PH-interacting protein yes no 2 3.8972E-05 94.767 2 1 0.76696 0.80514 25.663 3 Median 0.73247 0.7492 10.184 2 0 Median 1.3339 1.1478 NaN 1 0 Median 26350000 14764000 11586000 23573000 13530000 10044000 2776800 1234100 1542700 12764 1942 13117 33670;33671;33672 52473;52474;52475;52476;52477;52478;52479 52478 7 TAGAPTGTVPQQLQVHGVQQSVPVTQER PPEQSPVQANSSSSKTAGAPTGTVPQQLQV QVHGVQQSVPVTQERSVVQATPQAPKPGPV K T A E R S 2 1 0 0 0 6 1 3 1 0 1 0 0 0 3 1 4 0 0 5 0 0 28 0 2912.5104 P22670 P22670 220 247 RFX1 MHC class II regulatory factor RFX1 yes yes 3 0.00019484 33.265 2 0.98688 0.83471 6.1034 2 Median NaN NaN NaN 0 0 Median 0.98688 0.83471 6.1034 2 0 Median 15067000 6304500 8762400 0 0 0 15067000 6304500 8762400 12765 1509 13118 33673;33674 52480;52481;52482;52483 52481 4 TAGDGWFGMK SKYQLQKKRRKERQKTAGDGWFGMKAPEMT KERQKTAGDGWFGMKAPEMTNELKNDLKAL K T A M K A 1 0 0 1 0 0 0 3 0 0 0 1 1 1 0 0 1 1 0 0 0 0 10 0 1068.4699 Q5QJE6 Q5QJE6 640 649 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.016669 46.447 2 1 1.0992 0.96723 NaN 1 Median NaN NaN NaN 0 0 Median 1.0992 0.96723 NaN 1 0 Median 9180700 586430 8594200 8029600 0 8029600 1151100 586430 564690 12766 1813 13119 33675;33676;33677 52484;52485;52486 52486 1675 3 TAGLVMTHLILK HLYARLRDPAQQVRKTAGLVMTHLILKDMV VRKTAGLVMTHLILKDMVKVKGQVSEMAVL K T A L K D 1 0 0 0 0 0 0 1 1 1 3 1 1 0 0 0 2 0 0 1 0 0 12 0 1295.7635 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1111 1122 NCAPD2 Condensin complex subunit 1 yes no 2 0.00023021 99.343 2 2 1.6972 1.3733 0.30959 2 Median NaN NaN NaN 0 0 Median 1.6972 1.3733 0.30959 2 0 Median 27996000 5982000 22014000 12439000 0 12439000 15557000 5982000 9574800 12767 908 13120;13121 33678;33679;33680;33681 52487;52488;52489;52490 52489 748 4 TAGNSEFLGK SGGGGSRGAPQHYPKTAGNSEFLGKTPGQN QHYPKTAGNSEFLGKTPGQNAQKWIPARST K T A G K T 1 0 1 0 0 0 1 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1022.5033 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77;H0YEN8;H0YDC0;H0YCF8;H0YD99 D3DQV9 32 41 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.029066 50.805 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12768 1054 13122 33682 52491 52491 1 TAGPLESSETEEASQLK QTSACRLQEELEKLRTAGPLESSETEEASQ GPLESSETEEASQLKERLEKEKKLTSDLGR R T A L K E 2 0 0 0 0 1 4 1 0 0 2 1 0 0 1 3 2 0 0 0 0 0 17 0 1775.8425 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5;B3KSG1;A0A087WU26 A0A0A0MRV0 1334 1350 RRBP1 Ribosome-binding protein 1 yes no 2 1.0152E-12 116.51 5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12858000 10915000 1943900 10915000 10915000 0 1943900 0 1943900 12769 471 13123 33683;33684;33685;33686;33687;33688 52492;52493;52494;52495;52496;52497 52495 6 TAGTLFGEGFR LKAAEHRQTVLESIRTAGTLFGEGFRAFVT ESIRTAGTLFGEGFRAFVTDWDKVTATVAG R T A F R A 1 1 0 0 0 0 1 3 0 0 1 0 0 2 0 0 2 0 0 0 0 0 11 0 1154.572 Q9NVI7;H0Y2W2;Q96T67;Q5T9A4;Q9H834 Q9NVI7 276 286 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B yes no 2 5.2616E-08 111.06 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28878000 11117000 17761000 28878000 11117000 17761000 0 0 0 12770 2074 13124 33689;33690;33691;33692 52498;52499;52500;52501;52502 52498 5 TAHLDEEVNK LLLWNNATVTTCHSKTAHLDEEVNKGDILV TCHSKTAHLDEEVNKGDILVVATGQPEMVK K T A N K G 1 0 1 1 0 0 2 0 1 0 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1154.5568 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 199 208 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 3.7939E-11 120.27 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15959000 0 15959000 15959000 0 15959000 0 0 0 12771 196 13125 33693;33694 52503;52504 52504 2 TAICNLILGNPPSK KVHILGSFQNIKMARTAICNLILGNPPSKV RTAICNLILGNPPSKVYGNIRAVASRSADR R T A S K V 1 0 2 0 1 0 0 1 0 2 2 1 0 0 2 1 1 0 0 0 0 0 14 0 1496.8021 B2R823;Q9NRX1 B2R823 223 236 PNO1 RNA-binding protein PNO1 yes no 2 3.3454E-14 127.17 2 0.90897 0.96186 11.592 2 Median 0.90897 0.96186 11.592 2 0 Median NaN NaN NaN 0 0 Median 67109000 36292000 30817000 67109000 36292000 30817000 0 0 0 12772 858 13126 33695;33696 52505;52506;52507;52508;52509 52509 5 TAISLFEGK GNDSEEALTALMSRKTAISLFEGKALGLDK ALMSRKTAISLFEGKALGLDKAILHSIDCC K T A G K A 1 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 1 0 0 0 0 0 9 0 964.52295 Q9H981;H0Y849 Q9H981 499 507 ACTR8 Actin-related protein 8 yes no 2 0.010129 66.621 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4811900 4811900 0 4811900 4811900 0 0 0 0 12773 2044 13127 33697 52510 52510 1 TAITVEHLAIK STYEQVDLIGKKTQKTAITVEHLAIKCHWT KTQKTAITVEHLAIKCHWTQRAAVIGDVIR K T A I K C 2 0 0 0 0 0 1 0 1 2 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1194.6972 Q9NR30 Q9NR30 407 417 DDX21 Nucleolar RNA helicase 2 yes yes 2 4.1741E-08 142.98 2 2 1.166 1.1426 11.876 4 Median 1.1156 1.2632 0.70329 2 0 Median 1.2388 1.0289 1.3333 2 0 Median 372080000 175870000 196210000 284720000 137630000 147090000 87362000 38247000 49115000 12774 2065 13128 33698;33699;33700;33701 52511;52512;52513;52514;52515;52516 52513 6 TALAATNPAVR GFSGLNVKAFISNVKTALAATNPAVRTAAI SNVKTALAATNPAVRTAAITLLGVMYLYVG K T A V R T 4 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 0 1 0 0 11 0 1083.6037 Q14008 Q14008 762 772 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00059163 73.985 2 1 1.1199 1.1768 21.47 3 Median 1.0276 1.0621 14.513 2 0 Median 1.7056 1.4724 NaN 1 0 Median 33209000 15887000 17322000 32034000 15475000 16559000 1175500 412110 763390 12775 1725 13129 33702;33703;33704 52517;52518;52519 52518 3 TALALAIAQELGSK AGRAVLLAGPPGTGKTALALAIAQELGSKV KTALALAIAQELGSKVPFCPMVGSEVYSTE K T A S K V 4 0 0 0 0 1 1 1 0 1 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1384.7926 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 77 90 RUVBL1 RuvB-like 1 yes no 2 5.5505E-05 92.247 2 1.081 0.87505 1.8435 2 Median NaN NaN NaN 0 0 Median 1.081 0.87505 1.8435 2 0 Median 48726000 23544000 25182000 0 0 0 48726000 23544000 25182000 12776 1076 13130 33705;33706 52520;52521;52522 52521 3 TALENLIVLLK RQCIESENTWRDLMKTALENLIVLLKDENT DLMKTALENLIVLLKDENTISPYEMCSSGL K T A L K D 1 0 1 0 0 0 1 0 0 1 4 1 0 0 0 0 1 0 0 1 0 0 11 0 1225.7646 G3V4V5;H0YJP0;A0A087X2H1;Q9ULT8 G3V4V5 891 901 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 2 9.0297E-05 81.972 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12777 453 13131 33707 52523 52523 1 TALFEEISR QGAVESIAMKNPKERTALFEEISRSGELAQ KNPKERTALFEEISRSGELAQEYDKRKKEM R T A S R S 1 1 0 0 0 0 2 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 9 0 1064.5502 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;Q68EN4;H0Y7K8;Q5H934 Q14683 152 160 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0022085 75.378 2 2 1.0429 1.0266 14.726 4 Median 0.84976 0.89092 4.9755 2 0 Median 1.2942 1.1441 0.24964 2 0 Median 61446000 33916000 27530000 56650000 31896000 24754000 4795600 2019800 2775800 12778 1739 13132 33708;33709;33710;33711 52524;52525;52526;52527;52528;52529;52530 52528 7 TALGDIGNK PTAPAATSKPGLRPRTALGDIGNKVSEQLQ PGLRPRTALGDIGNKVSEQLQAKMPMKKEA R T A N K V 1 0 1 1 0 0 0 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 887.47125 P14635;E9PC90;H1UBN2;D6RHI0 P14635 43 51 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 0.0095109 60.118 1 1 0.98518 0.90475 23.377 2 Median 0.72116 0.7669 NaN 1 0 Median 1.3458 1.0674 NaN 1 0 Median 40695000 22337000 18358000 36265000 20641000 15624000 4430300 1696500 2733800 12779 1483 13133 33712;33713 52531;52532 52531 2 TALHGESNSVLIIGPR GVQVQYKHLSELLKRTALHGESNSVLIIGP ALHGESNSVLIIGPRGSGKTMLINHALKEL R T A P R G 1 1 1 0 0 0 1 2 1 2 2 0 0 0 1 2 1 0 0 1 0 0 16 0 1662.9053 A8K7H4;O43929;B7Z2M4;C9JGH7;C9J2X8;Q53SE3 A8K7H4 54 69 ORC4;ORC4L Origin recognition complex subunit 4 yes no 3 0.02862 20.048 1 1.4669 1.2713 NaN 1 Median NaN NaN NaN 0 0 Median 1.4669 1.2713 NaN 1 0 Median 2028300 689980 1338300 0 0 0 2028300 689980 1338300 + 12780 772 13134 33714 52533 52533 1 TALIHDGLAR GGVMDVNTALQEVLKTALIHDGLARGIREA QEVLKTALIHDGLARGIREAAKALDKRQAH K T A A R G 2 1 0 1 0 0 0 1 1 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1065.5931 P25398 P25398 24 33 RPS12 40S ribosomal protein S12 yes yes 2;3 2.8741E-08 120.12 4 3 1.4243 1.6203 17.869 7 Median 1.4189 1.6591 2.071 4 0 Median 1.4603 1.1964 4.7886 3 0 Median 1412100000 600560000 811580000 1381300000 587560000 793710000 30870000 13000000 17871000 12781 1515 13135 33715;33716;33717;33718;33719;33720;33721 52534;52535;52536;52537;52538;52539;52540;52541;52542;52543;52544;52545;52546 52539 13 TALILGGDR TLKFTKELGKFTGLKTALILGGDRMEDQFA KFTGLKTALILGGDRMEDQFAALHENPDII K T A D R M 1 1 0 1 0 0 0 2 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 914.51853 Q8TDD1;F8VRX4 Q8TDD1 197 205 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.021536 49.423 1 1 1.1715 1.1594 8.1605 2 Median 1.0784 1.2283 NaN 1 0 Median 1.2726 1.0944 NaN 1 0 Median 108810000 40925000 67890000 106030000 39733000 66296000 2786400 1192400 1593900 12782 1933 13136 33722;33723 52547;52548 52547 2 TALINSTGEEVAMR VWKAQNTWGCGNSLRTALINSTGEEVAMRK RTALINSTGEEVAMRKLVRSVTVVEDDEDE R T A M R K 2 1 1 0 0 0 2 1 0 1 1 0 1 0 0 1 2 0 0 1 0 0 14 0 1490.7399 P02545;Q3BDU5;Q5TCI8;B4DFR3 P02545 528 541 LMNA Prelamin-A/C;Lamin-A/C yes no 2 3.23E-21 138.99 3 2 1.4626 1.8636 27.239 4 Linear 1.4626 1.6878 2.2482 2 0 Median 1.3612 1.1593 28.459 2 0 Median 311390000 126800000 184590000 301790000 122760000 179030000 9596900 4031200 5565700 12783 1440 13137;13138 33724;33725;33726;33727;33728 52549;52550;52551;52552;52553;52554;52555;52556 52552 1140 8 TALINSTGEEVAMRK VWKAQNTWGCGNSLRTALINSTGEEVAMRK TALINSTGEEVAMRKLVRSVTVVEDDEDED R T A R K L 2 1 1 0 0 0 2 1 0 1 1 1 1 0 0 1 2 0 0 1 0 0 15 1 1618.8349 P02545;Q3BDU5;Q5TCI8;B4DFR3 P02545 528 542 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 1.9326E-21 140.01 5 1.7449 2.0576 8.8744 3 Median 1.7449 2.0576 8.8744 3 0 Median NaN NaN NaN 0 0 Median 433610000 217780000 215820000 433610000 217780000 215820000 0 0 0 12784 1440 13139 33729;33730;33731;33732;33733 52557;52558;52559;52560;52561;52562;52563 52557 1140 7 TALLAVK VRKKIYFKNSENLWKTALLAVKQRNRGPSP KNSENLWKTALLAVKQRNRGPSPEPLKLML K T A V K Q 2 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 7 0 714.46398 B4DZL4;A0A024RCG4;Q92674 B4DZL4 271 277 FSHPRH1;CENPI Centromere protein I yes no 2 0.034211 62.714 2 0.63632 0.67413 9.0595 2 Median 0.63632 0.67413 9.0595 2 0 Median NaN NaN NaN 0 0 Median 37213000 22342000 14871000 37213000 22342000 14871000 0 0 0 12785 360 13140 33734;33735 52564;52565 52564 2 TALQEEIK ASNQREEYLLLRLFKTALQEEIKSKVDQIQ LLLRLFKTALQEEIKSKVDQIQEIVTGNPT K T A I K S 1 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 930.50221 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;H0YLE8;B4E2M0 A4QPB0 1028 1035 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 no no 2 0.0097797 77.923 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14580000 0 14580000 14580000 0 14580000 0 0 0 12786 352 13141 33736;33737 52566;52567 52567 2 TALTYYLDITNPPR ESNKKHPFPCPTSYRTALTYYLDITNPPRT RTALTYYLDITNPPRTNVLYELAQYASEPS R T A P R T 1 1 1 1 0 0 0 0 0 1 2 0 0 0 2 0 3 0 2 0 0 0 14 0 1636.8461 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;E7EMD0;B4DDH3;B4DKM8;B4E305 B2R6E5 372 385 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 6.534E-15 121.08 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15458000 0 15458000 13763000 0 13763000 1694800 0 1694800 12787 719 13142 33738;33739;33740 52568;52569;52570 52569 3 TANLAEANASEEDK IDDSSASISLAQLTKTANLAEANASEEDKI KTANLAEANASEEDKIKAMMSQSGHEYDPI K T A D K I 4 0 2 1 0 0 3 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 14 0 1461.6583 I3L3Y2;H3BUN0;Q7Z6E9 I3L3Y2 117 130 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 2 0.0013412 76.326 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4825700 0 4825700 4825700 0 4825700 0 0 0 12788 1306 13143 33741;33742 52571;52572 52571 2 TANSPGSGARPDPVR ______________________________ TANSPGSGARPDPVRSFNRWKKKHSHRQNK K T A V R S 2 2 1 1 0 0 0 2 0 0 0 0 0 0 3 2 1 0 0 1 0 0 15 1 1480.7383 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 4 18 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 3 0.010557 30.133 2 1.0032 0.88981 15.906 2 Median NaN NaN NaN 0 0 Median 1.0032 0.88981 15.906 2 0 Median 7020100 3473100 3547000 0 0 0 7020100 3473100 3547000 12789 1708 13144 33743;33744 52573;52574;52575 52573 3 TAPLLLSYYLIK GTGQLFQAQQDLLHRTAPLLLSYYLIKWGS LHRTAPLLLSYYLIKWGSECLATDVPLDTL R T A I K W 1 0 0 0 0 0 0 0 0 1 4 1 0 0 1 1 1 0 2 0 0 0 12 0 1393.8221 G3V198;Q12769;E9PR16 G3V198 731 742 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.016404 42.21 2 1.0995 1.1143 0.81442 2 Median 1.0995 1.1143 0.81442 2 0 Median NaN NaN NaN 0 0 Median 15154000 7222900 7931300 15154000 7222900 7931300 0 0 0 12790 1271 13145 33745;33746 52576;52577;52578 52576 3 TAPVASTPSSTPIPALSPPTK EPSVPSAAKPPSPEKTAPVASTPSSTPIPA TPSSTPIPALSPPTKVPEPNENVGDAVQTK K T A T K V 3 0 0 0 0 0 0 0 0 1 1 1 0 0 6 4 4 0 0 1 0 0 21 0 2019.0888 Q7Z3K3 Q7Z3K3 429 449 POGZ Pogo transposable element with ZNF domain yes yes 2 0.024269 37.654 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12791 1874 13146 33747 52579 52579 1 TAQAVFPAIAQEICQEEVSRPAGK LKGFKTIMLNCMSLRTAQAVFPAIAQEICQ AQEICQEEVSRPAGKDMMRKLEKHMTAEKG R T A G K D 5 1 0 0 1 3 3 1 0 2 0 1 0 1 2 1 1 0 0 2 0 0 24 1 2599.3064 B2R935;A0A024R1S2;Q99741 B2R935 238 261 CDC6 Cell division control protein 6 homolog yes no 3 0.028059 18.699 1 1.1149 0.93952 NaN 1 Median NaN NaN NaN 0 0 Median 1.1149 0.93952 NaN 1 0 Median 4010900 1663900 2347000 0 0 0 4010900 1663900 2347000 12792 85 13147 33748 52580;52581 52581 2 TAQCFLR KDGVWNLQNEVTKERTAQCFLRVDDESMQR QNEVTKERTAQCFLRVDDESMQRFHNRVRQ R T A L R V 1 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 894.43817 Q6P2Q9 Q6P2Q9 1225 1231 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.032754 77.748 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7302200 7302200 0 7302200 7302200 0 0 0 0 12793 1854 13148 33749 52582 52582 1 TAQETSTMTMNVSQVDDVVSSK QNIMCPTKLVKSAFKTAQETSTMTMNVSQV MTMNVSQVDDVVSSKTRTRGQRIQNVNVKS K T A S K T 1 0 1 2 0 2 1 0 0 0 0 1 2 0 0 4 4 0 0 4 0 0 22 0 2357.0727 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1717 1738 AHCTF1 Protein ELYS yes no 2 7.9454E-09 80.609 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12794 1945 13149 33750;33751 52583;52584 52584 1793;1794 2 TAQEVETYR KKKNFYQEHPDLARRTAQEVETYRRSKEIT PDLARRTAQEVETYRRSKEITVRGHNCPKP R T A Y R R 1 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 9 0 1095.5197 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;J3QRQ7;J3KRX8;J3QR02;C1IK54 B4DN41 58 66 DDX5;DKFZp686J01190;DDX5-ETV4 fusion Probable ATP-dependent RNA helicase DDX5 yes no 2 2.2531E-05 116.05 2 2 1.0732 1.0823 0.67295 2 Median 1.0732 1.0823 0.67295 2 0 Median NaN NaN NaN 0 0 Median 50103000 23752000 26351000 47786000 22513000 25274000 2316200 1238900 1077200 12795 1009 13150 33752;33753;33754;33755 52585;52586;52587;52588;52589;52590 52586 6 TAQEVETYRR KKKNFYQEHPDLARRTAQEVETYRRSKEIT DLARRTAQEVETYRRSKEITVRGHNCPKPV R T A R R S 1 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 10 1 1251.6208 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;J3QRQ7;J3KRX8;J3QR02;C1IK54 B4DN41 58 67 DDX5;DKFZp686J01190;DDX5-ETV4 fusion Probable ATP-dependent RNA helicase DDX5 yes no 3 0.0079501 44.309 1 1.4452 1.4514 NaN 1 Median 1.4452 1.4514 NaN 1 0 Median NaN NaN NaN 0 0 Median 9465800 4055100 5410600 9465800 4055100 5410600 0 0 0 12796 1009 13151 33756 52591 52591 1 TAQGLPGTSNSNSSR KKVKKPAPPQHFSPRTAQGLPGTSNSNSSR TAQGLPGTSNSNSSRSGSQRQGSWDSRDVV R T A S R S 1 1 2 0 0 1 0 2 0 0 1 0 0 0 1 4 2 0 0 0 0 0 15 0 1475.6964 A0A024R8V6;Q9P275;A0A075B784;B3KMW2 A0A024R8V6 549 563 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 1.3111E-05 90.653 1 0.99235 1.0008 NaN 1 Median 0.99235 1.0008 NaN 1 0 Median NaN NaN NaN 0 0 Median 10462000 6004900 4456800 10462000 6004900 4456800 0 0 0 12797 260 13152 33757 52592;52593 52592 2 TAQNFLSIFLK DQDVVITNSYETAMRTAQNFLSIFLKKCGS TAMRTAQNFLSIFLKKCGSKQGEEDYRPLF R T A L K K 1 0 1 0 0 1 0 0 0 1 2 1 0 2 0 1 1 0 0 0 0 0 11 0 1280.7129 Q6IEH8;Q6KC79 Q6IEH8 1537 1547 NIPBL Nipped-B-like protein yes no 2 7.8316E-06 109.66 2 0.61637 0.61979 8.2839 2 Median 0.61637 0.61979 8.2839 2 0 Median NaN NaN NaN 0 0 Median 12502000 7282100 5219700 12502000 7282100 5219700 0 0 0 12798 1843 13153 33758;33759 52594;52595;52596;52597;52598 52596 5 TASALFAGFR ______________________________ ASERRTASALFAGFRALGLFSNDIPHVVRF R T A F R A 3 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 1 0 0 0 0 0 10 0 1039.5451 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 9 18 WDR36 WD repeat-containing protein 36 yes no 2 2.9416E-08 112.84 5 2 1.0789 0.9286 3.4018 3 Median 0.82199 0.89995 NaN 1 0 Median 1.1169 0.94576 2.5901 2 0 Median 47074000 25594000 21480000 32656000 18589000 14067000 14418000 7004500 7413400 12799 486 13154 33760;33761;33762;33763;33764;33765;33766 52599;52600;52601;52602;52603;52604;52605;52606 52601 8 TASVLSKDDVAPESGDTTVK EKQKERKKKRQQARKTASVLSKDDVAPESG SKDDVAPESGDTTVKKPESKKEQTPEHGKK K T A V K K 2 0 0 3 0 0 1 1 0 0 1 2 0 0 1 3 3 0 0 3 0 0 20 1 2019.0008 O76021;J3QSV6;A0PJ61;Q32Q62 O76021 312 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 2.8134E-06 61.181 2 0.74332 0.63167 0.82249 2 Median NaN NaN NaN 0 0 Median 0.74332 0.63167 0.82249 2 0 Median 46433000 27253000 19180000 0 0 0 46433000 27253000 19180000 12800 1415 13155 33767;33768 52607;52608;52609 52607 3 TATESFASDPILYR HGTHEYHAETIKNVRTATESFASDPILYRP RTATESFASDPILYRPVAVALDTKGPEIRT R T A Y R P 2 1 0 1 0 0 1 0 0 1 1 0 0 1 1 2 2 0 1 0 0 0 14 0 1569.7675 V9HWB8;P14618;A0A024R5Z9;H3BTN5;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 V9HWB8 93 106 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 0.0085228 53.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7272000 0 7272000 7272000 0 7272000 0 0 0 12801 1481 13156 33769 52610 52610 1 TATESFASDPILYRPVAVALDTK HGTHEYHAETIKNVRTATESFASDPILYRP DPILYRPVAVALDTKGPEIRTGLIKGSGTA R T A T K G 4 1 0 2 0 0 1 0 0 1 2 1 0 1 2 2 3 0 1 2 0 0 23 1 2464.285 V9HWB8;P14618;A0A024R5Z9;H3BTN5;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 V9HWB8 93 115 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 3 3.451E-39 135.21 2 1 2.4726 2.0994 NaN 1 Median NaN NaN NaN 0 0 Median 2.4726 2.0994 NaN 1 0 Median 199280000 8082600 191200000 176020000 0 176020000 23255000 8082600 15172000 12802 1481 13157 33770;33771;33772 52611;52612;52613;52614 52612 4 TATFAISILQQIELDLK KGYDVIAQAQSGTGKTATFAISILQQIELD TFAISILQQIELDLKATQALVLAPTRELAQ K T A L K A 2 0 0 1 0 2 1 0 0 3 3 1 0 1 0 1 2 0 0 0 0 0 17 0 1903.0666 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;B4E047;J3KS25;B4E102;J3KS93 A8K7F6 83 99 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 1.0608E-06 90.412 2 1.8827 2.0725 3.8955 2 Median 1.8827 2.0725 3.8955 2 0 Median NaN NaN NaN 0 0 Median 5732600 2051100 3681600 5732600 2051100 3681600 0 0 0 12803 770 13158 33773;33774 52615;52616 52615 1 TATGPSTGGGTVISR QKVNGASVVMVQPSKTATGPSTGGGTVISR TATGPSTGGGTVISRTQSSLVEAFNKILNS K T A S R T 1 1 0 0 0 0 0 4 0 1 0 0 0 0 1 2 4 0 0 1 0 0 15 0 1360.6947 Q8N1G0;H0Y5I5;F8WCX2 Q8N1G0 478 492 ZNF687 Zinc finger protein 687 yes no 2 0.00022128 84.169 2 2 1.1259 1.0457 44.063 4 Median 0.67675 0.69545 10.716 2 0 Median 1.7452 1.4801 2.1599 2 0 Median 41774000 21726000 20049000 35059000 19159000 15900000 6714900 2566600 4148300 12804 1905 13159 33775;33776;33777;33778 52617;52618;52619;52620;52621;52622;52623;52624 52618 8 TATITEPR GNWVLIEGVDQPIVKTATITEPRGNEEAQI VDQPIVKTATITEPRGNEEAQIFRPLKFNT K T A P R G 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 3 0 0 0 0 0 8 0 887.47125 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 513 520 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.025194 55.37 1 1.0244 1.0651 NaN 1 Median 1.0244 1.0651 NaN 1 0 Median NaN NaN NaN 0 0 Median 20958000 10510000 10448000 20958000 10510000 10448000 0 0 0 12805 794 13160 33779 52625 52625 1 TATSLAEGLSLVVSPDSIHSVAPENEGR LSFYLIFTNEGRALKTATSLAEGLSLVVSP SPDSIHSVAPENEGRLVHIIGALRTSKLLS K T A G R L 3 1 1 1 0 0 3 2 1 1 3 0 0 0 2 5 2 0 0 3 0 0 28 0 2835.425 A0A024R2F9;Q9BTV4;A0A0S2Z5N2 A0A024R2F9 60 87 TMEM43 Transmembrane protein 43 yes no 3 1.3118E-16 72.474 2 2 0.47384 0.43514 14.549 4 Median 0.43035 0.4346 9.619 2 0 Median 0.56143 0.47419 21.599 2 0 Median 44308000 28772000 15535000 32399000 21184000 11215000 11908000 7587600 4320500 12806 110 13161 33780;33781;33782;33783 52626;52627;52628;52629;52630;52631;52632;52633 52626 8 TATTQETDGFQVK KDLYGPDNHLVEWHRTATTQETDGFQVKRP HRTATTQETDGFQVKRPGDVNVRCTVLLML R T A V K R 1 0 0 1 0 2 1 1 0 0 0 1 0 1 0 0 4 0 0 1 0 0 13 0 1424.6783 A0A024R137;A0A024R102;Q96GM5;F8VUB0;A8K9I5;F8VRQ4;F8VZ70 A0A024R137 385 397 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 2.3839E-13 127.76 2 1 0.76354 0.7647 51.478 3 Median 0.71639 0.7238 7.7743 2 0 Median 2.122 1.7564 NaN 1 0 Median 35233000 22105000 13128000 33617000 21557000 12060000 1616300 548150 1068200 12807 65 13162 33784;33785;33786 52634;52635;52636;52637;52638 52634 5 TATVHEVIR TGGCMYISGVPGTGKTATVHEVIRCLQQAA VPGTGKTATVHEVIRCLQQAAQANDVPPFQ K T A I R C 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 2 0 0 2 0 0 9 0 1024.5665 B7Z8H0;Q96F82;Q13415;A8K794 B7Z8H0 536 544 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 3 0.0061724 44.203 2 1.1435 1.1396 4.9359 2 Median 1.1435 1.1396 4.9359 2 0 Median NaN NaN NaN 0 0 Median 17252000 7789800 9461800 17252000 7789800 9461800 0 0 0 12808 1103 13163 33787;33788 52639;52640 52640 2 TAVAPIER AKDFLAGGIAAAISKTAVAPIERVKLLLQV IAAAISKTAVAPIERVKLLLQVQHASKQIA K T A E R V 2 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 8 0 855.48142 Q6I9V5;Q59EI9;P12236;A0A0S2Z359;V9GYG0;A8K787;A0A0S2Z3H3;P12235;Q9H0C2 Q6I9V5 24 31 SLC25A6;SLC25A4;SLC25A31 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed no no 2 0.049746 50.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13745000 13745000 0 13745000 13745000 0 0 0 0 12809 1474 13164 33789 52641 52641 1 TAVCDIPPR KNSSYFVEWIPNNVKTAVCDIPPRGLKMAV IPNNVKTAVCDIPPRGLKMAVTFIGNSTAI K T A P R G 1 1 0 1 1 0 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 0 9 0 1027.5121 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCT2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2;A6NNZ2;Q3ZCM7;A0A075B736;Q5SQY0;P04350;B4DE77;B4DJ43 Q5JP53 333 341 TUBB;TUBB2C;TUBB4B;TUBB2A;TUBB2B;DKFZp566F223;TUBB8;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-8 chain;Tubulin beta-4A chain no no 2 3.1829E-05 106.93 6 2 1.2996 1.758 34.699 4 Linear 1.5205 1.7386 3.1832 2 0 Median 1.1285 0.95424 1.7073 2 0 Median 387140000 194020000 193120000 373670000 187030000 186640000 13474000 6994600 6479100 12810 1452;1660;1723;1441;1778 13165 33790;33791;33792;33793;33794;33795;33796;33797 52642;52643;52644;52645;52646;52647;52648;52649;52650;52651;52652;52653;52654;52655;52656;52657;52658;52659;52660;52661;52662;52663 52642 22 TAVDGPDLEMLTGQER YIPPHAALCLEVTLKTAVDGPDLEMLTGQE AVDGPDLEMLTGQERVALANRKRECGNAHY K T A E R V 1 1 0 2 0 1 2 2 0 0 2 0 1 0 1 0 2 0 0 1 0 0 16 0 1730.8145 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;M0R2K9 B2R8G6 146 161 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8;Peptidyl-prolyl cis-trans isomerase yes no 2 4.2961E-09 107.65 2 1.1501 1.1748 6.0367 2 Median 1.1501 1.1748 6.0367 2 0 Median NaN NaN NaN 0 0 Median 38393000 21281000 17112000 38393000 21281000 17112000 0 0 0 12811 232 13166 33798;33799 52664;52665;52666;52667;52668;52669 52668 172 6 TAVDSGIPLLTNFQVTK NNNTKFVHDNYVIRRTAVDSGIPLLTNFQV VDSGIPLLTNFQVTKLFAEAVQKSRKVDSK R T A T K L 1 0 1 1 0 1 0 1 0 1 2 1 0 1 1 1 3 0 0 2 0 0 17 0 1802.9778 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327 Q5R210 1455 1471 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 7.3245E-05 67.385 2 1.7541 1.7821 0.98846 2 Median 1.7541 1.7821 0.98846 2 0 Median NaN NaN NaN 0 0 Median 25212000 8041900 17170000 25212000 8041900 17170000 0 0 0 12812 148 13167 33800;33801 52670;52671;52672 52672 3 TAVEFLSK LENLVLQAKIHMPEKTAVEFLSKAVDSPNI KIHMPEKTAVEFLSKAVDSPNIKAVDEAVI K T A S K A 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 8 0 893.48583 H7BXY3;A0A024R2T6;Q7L2E3;Q6W6M7 H7BXY3 803 810 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.017453 60.436 1 1.1081 1.1372 NaN 1 Median 1.1081 1.1372 NaN 1 0 Median NaN NaN NaN 0 0 Median 25412000 12135000 13277000 25412000 12135000 13277000 0 0 0 12813 122 13168 33802 52673 52673 1 TAVEMLQNQLK EEKEQAEIQIKEESKTAVEMLQNQLKELNE EESKTAVEMLQNQLKELNEAVAALCGDQEI K T A L K E 1 0 1 0 0 2 1 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 11 0 1273.67 P49454 P49454 2352 2362 CENPF Centromere protein F yes yes 2 0.0039911 58.433 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3536100 3536100 0 3536100 3536100 0 0 0 0 12814 1581 13169 33803;33804 52674;52675 52674 1365 2 TAVETAVLLLR LGIWEPLAVKLQTYKTAVETAVLLLRIDDI QTYKTAVETAVLLLRIDDIVSGHKKKGDDQ K T A L R I 2 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 2 0 0 2 0 0 11 0 1184.7129 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368 B4DUR8 463 473 CCT3 T-complex protein 1 subunit gamma yes no 2 2.1845E-05 104.2 2 1.7415 1.7406 7.4711 2 Median 1.7415 1.7406 7.4711 2 0 Median NaN NaN NaN 0 0 Median 19043000 6668300 12374000 19043000 6668300 12374000 0 0 0 12815 951 13170 33805;33806 52676;52677;52678 52677 3 TAVFQEFSHSR LKFLRLHGGMEQEERTAVFQEFSHSRRGVL QEERTAVFQEFSHSRRGVLLCTDVAARGLD R T A S R R 1 1 0 0 0 1 1 0 1 0 0 0 0 2 0 2 1 0 0 1 0 0 11 0 1307.6258 B4DYZ1;F8WAJ0;Q9H8H2 B4DYZ1 439 449 DDX31 Probable ATP-dependent RNA helicase DDX31 no no 3 0.032306 27.137 1 0.73886 0.753 NaN 1 Median 0.73886 0.753 NaN 1 0 Median NaN NaN NaN 0 0 Median 6912200 4544900 2367300 6912200 4544900 2367300 0 0 0 12816 1053;1268 13171 33807 52679 52679 1 TAVSGIRPENLK YDKYVKPTEPVTDYRTAVSGIRPENLKQGE DYRTAVSGIRPENLKQGEELEVVQKEVAEM R T A L K Q 1 1 1 0 0 0 1 1 0 1 1 1 0 0 1 1 1 0 0 1 0 0 12 1 1283.7197 Q9GZR2;B4E331;B4DJ95 Q9GZR2 291 302 REXO4 RNA exonuclease 4 yes no 2;3 0.00032145 98.156 2 3 1.2235 1.0269 11.421 5 Median 0.90044 0.99701 4.1737 2 0 Median 1.4183 1.2249 11.395 3 0 Median 46972000 22520000 24452000 36968000 17994000 18974000 10004000 4526000 5477700 12817 2021 13172 33808;33809;33810;33811;33812 52680;52681;52682;52683;52684;52685;52686 52682 7 TAVTGSLSENDPLR PLDQKLKYQIDKLIKTAVTGSLSENDPLRF KTAVTGSLSENDPLRFKPHPSNMMSKLSSE K T A L R F 1 1 1 1 0 0 1 1 0 0 2 0 0 0 1 2 2 0 0 1 0 0 14 0 1458.7314 Q8NEJ9;G3V4G1 Q8NEJ9 116 129 NGDN Neuroguidin yes no 2 2.0702E-46 177.44 2 2 0.89645 0.85154 5.2354 4 Median 0.79587 0.89761 6.5253 2 0 Median 0.9892 0.843 0.49944 2 0 Median 203250000 112390000 90855000 153320000 86281000 67040000 49925000 26111000 23814000 12818 1927 13173 33813;33814;33815;33816 52687;52688;52689;52690;52691;52692;52693;52694;52695;52696 52689 10 TAVVVGTITDDVR SRMIRKMKLPGRENKTAVVVGTITDDVRVQ NKTAVVVGTITDDVRVQEVPKLKVCALRVT K T A V R V 1 1 0 2 0 0 0 1 0 1 0 0 0 0 0 0 3 0 0 4 0 0 13 0 1344.7249 G3V203;A0A024QZD1;J3QQ67;Q07020;Q0QEW2;H0YHA7;F8VYV2;B4DDY5;A0A075B7A0;F8VUA6 G3V203 79 91 RPL18 60S ribosomal protein L18 yes no 2 3.9173E-39 185.96 3 2 0.91603 0.93229 19.208 4 Median 0.91768 1.0903 1.6323 2 0 Median 0.90175 0.78395 3.9959 2 0 Median 3797700000 1919900000 1877800000 3520800000 1772500000 1748400000 276890000 147440000 129450000 12819 16 13174 33817;33818;33819;33820;33821 52697;52698;52699;52700;52701;52702;52703;52704;52705;52706;52707;52708;52709;52710;52711;52712;52713 52700 17 TCAPLAVLQGHSASITSLQFSPLCSGSK AAGSCDKMIRVWCLRTCAPLAVLQGHSASI SITSLQFSPLCSGSKRYLSSTGADGTICFW R T C S K R 3 0 0 0 2 2 0 2 1 1 4 1 0 1 2 6 2 0 0 1 0 0 28 0 2916.4474 Q8WWQ0 Q8WWQ0 256 283 PHIP PH-interacting protein yes yes 3 3.2292E-19 77.873 2 2 0.99818 0.92386 31.204 4 Median 0.66457 0.69718 3.6233 2 0 Median 1.4404 1.1955 0.26162 2 0 Median 157060000 78873000 78186000 71079000 43229000 27851000 85979000 35644000 50335000 12820 1942 13175 33822;33823;33824;33825 52714;52715;52716;52717;52718;52719;52720;52721;52722 52718 9 TCATVTIGGINIAEALVSK PASPATETVPAFSERTCATVTIGGINIAEA VTIGGINIAEALVSKGLATVIRYRQDDDQR R T C S K G 3 0 1 0 1 0 1 2 0 3 1 1 0 0 0 1 3 0 0 2 0 0 19 0 1917.0241 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8 A0A140VK49 439 457 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.0048887 32.068 1 1.2941 1.296 NaN 1 Median 1.2941 1.296 NaN 1 0 Median NaN NaN NaN 0 0 Median 7654700 2856000 4798700 7654700 2856000 4798700 0 0 0 12821 618 13176 33826 52723 52723 1 TCCYQALLVDEER ELQAWHGLQTFSLERTCCYQALLVDEERGR ERTCCYQALLVDEERGRLFVGAENHVASLN R T C E R G 1 1 0 1 2 1 2 0 0 0 2 0 0 0 0 0 1 0 1 1 0 0 13 0 1655.7283 A0A0C4DGV8;A0A1S5UZH6;Q13214;A0A087WZE0;Q9HBR1 A0A0C4DGV8 52 64 SEMA3B Semaphorin-3B yes no 2 0.017104 49.5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12822 518 13177 33827 52724 52724 1 TCFVDCLIEQTHPEIR LIRNVTLCGHLHHGKTCFVDCLIEQTHPEI CFVDCLIEQTHPEIRKRYDQDLCYTDILFT K T C I R K 0 1 0 1 2 1 2 0 1 2 1 0 0 1 1 0 2 0 0 1 0 0 16 0 2016.9397 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 94 109 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 4.7938E-05 73.279 1 2 0.82375 0.74605 14.067 3 Median 0.82375 0.84199 NaN 1 0 Median 0.81537 0.68887 11.277 2 0 Median 31350000 18236000 13114000 18931000 11688000 7243700 12418000 6548000 5870200 12823 794 13178 33828;33829;33830 52725;52726;52727;52728;52729;52730;52731 52725 7 TCLLIVFSK IRKKLVIVGDGACGKTCLLIVFSKDQFPEV DGACGKTCLLIVFSKDQFPEVYVPTVFENY K T C S K D 0 0 0 0 1 0 0 0 0 1 2 1 0 1 0 1 1 0 0 1 0 0 9 0 1079.6049 B4DKN9;Q5JR08;A0A024R324;A0A024R0I3;P61586;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;E9PLA2;C9JRM1;Q5JR06;A0A0B6XK12;E9PN11;U3KQA9;U3KQV3;P62745 B4DKN9 19 27 RHOC;RHOA;hCG_2043376;RHOB Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB yes no 2 0.017039 53.327 1 1 1.0844 1.0187 66.15 2 Median 1.5469 1.6262 NaN 1 0 Median 0.76025 0.6381 NaN 1 0 Median 5869100 2315300 3553800 4366700 1851600 2515100 1502300 463720 1038600 12824 48 13179 33831;33832 52732;52733 52732 2 TCNVLVALEQQSPDIAQGVHLDR KHIGYDDSSKGFDYKTCNVLVALEQQSPDI EQQSPDIAQGVHLDRNEEDIGAGDQGLMFG K T C D R N 2 1 1 2 1 3 1 1 1 1 3 0 0 0 1 1 1 0 0 3 0 0 23 0 2562.286 A0A140VJP5;P31153;B4DEX8 A0A140VJP5 103 125 MAT2A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase yes no 3 3.9242E-08 53.998 2 1.6536 1.6822 9.4527 2 Median 1.6536 1.6822 9.4527 2 0 Median NaN NaN NaN 0 0 Median 25350000 9567200 15783000 25350000 9567200 15783000 0 0 0 12825 606 13180 33833;33834 52734;52735;52736 52734 3 TCSPASLSQASADLEATLR EHSECICHICLVEHKTCSPASLSQASADLE ASLSQASADLEATLRHKLTVMYSQINGASR K T C L R H 4 1 0 1 1 1 1 0 0 0 3 0 0 0 1 4 2 0 0 0 0 0 19 0 1976.9473 Q14258 Q14258 185 203 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 0.0038779 43.184 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9565600 0 9565600 9565600 0 9565600 0 0 0 12826 1731 13181 33835;33836 52737;52738 52737 2 TCSQVSSYSLEQESNGEIEHVTK LGVLPFTLNSGSPEKTCSQVSSYSLEQESN SLEQESNGEIEHVTKRAISTPEKSISDVTF K T C T K R 0 0 1 0 1 2 4 1 1 1 1 1 0 0 0 5 2 0 1 2 0 0 23 0 2611.1708 P42695;Q96FA6 P42695 1388 1410 NCAPD3 Condensin-2 complex subunit D3 yes no 3 0.00049504 32.702 1 1 1.5122 1.3715 14.014 2 Median 1.1973 1.2421 NaN 1 0 Median 1.9099 1.5143 NaN 1 0 Median 15562000 7144600 8417100 11244000 5951900 5292100 4317700 1192600 3125000 12827 1565 13182 33837;33838 52739;52740;52741 52740 3 TCTTVAFTQVNSEDK IIKGKARLGRLVHRKTCTTVAFTQVNSEDK TCTTVAFTQVNSEDKGALAKLVEAIRTNYN K T C D K G 1 0 1 1 1 1 1 0 0 0 0 1 0 1 0 1 4 0 0 2 0 0 15 0 1699.7723 P62424;Q9BY74;Q5T8U2 P62424 198 212 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 6.7186E-22 142.1 3 2 0.79493 0.80076 16.704 4 Median 0.79113 0.91903 0.0535 2 0 Median 0.80499 0.68858 1.9174 2 0 Median 737840000 405060000 332780000 568800000 314080000 254720000 169040000 90978000 78060000 12828 1648 13183 33839;33840;33841;33842;33843 52742;52743;52744;52745;52746;52747;52748;52749;52750;52751;52752;52753;52754;52755 52754 14 TDAPQPDVKEEEEEKEEEK CCSGKKQTSGMEYKKTDAPQPDVKEEEEEK QPDVKEEEEEKEEEKDKGDEEEEGEEKLEE K T D E K D 1 0 0 2 0 1 8 0 0 0 0 3 0 0 2 0 1 0 0 1 0 0 19 2 2258.0074 P27824 P27824 517 535 CANX Calnexin yes yes 3 1.7838E-05 63.302 2 1 0.82893 0.9689 41.623 3 Median 0.87134 1.0335 9.1311 2 0 Median 0.51263 0.50701 NaN 1 0 Median 23376000 11588000 11788000 22095000 10828000 11266000 1281700 759590 522080 12829 1526 13184 33844;33845;33846 52756;52757;52758;52759 52758 4 TDASSASSFLDSDELER ELAGRPMKVGHVTERTDASSASSFLDSDEL ASSASSFLDSDELERTGIDLGTTGRLQLMA R T D E R T 2 1 0 3 0 0 2 0 0 0 2 0 0 1 0 5 1 0 0 0 0 0 17 0 1828.7963 A0A0U1RQH7;B7Z4L7;Q6N037;E1P5S2;G3XAC6;B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;Q6MZY7;A0A0U1RQW2;H0Y4X3 A0A0U1RQH7 177 193 DKFZp686A11192;RNPC2;RBM39;DKFZp781C0423;DKFZp686C17209 RNA-binding protein 39 yes no 2 6.93E-18 127.79 2 2 0.65352 0.60759 25.547 4 Median 0.72447 0.77418 13.074 2 0 Median 0.61077 0.50827 4.0486 2 0 Median 71836000 39318000 32519000 53592000 28492000 25100000 18244000 10826000 7418300 12830 588 13185 33847;33848;33849;33850 52760;52761;52762;52763;52764;52765;52766;52767;52768;52769;52770;52771 52767 12 TDDEDFVPSDASPPK MDLDSDEDFSDFDEKTDDEDFVPSDASPPK TDDEDFVPSDASPPKTKTSPKLSNKELKPQ K T D P K T 1 0 0 4 0 0 1 0 0 0 0 1 0 1 3 2 1 0 0 1 0 0 15 0 1618.6999 P11388 P11388 1343 1357 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.626E-22 147.26 2 2 1.011 0.92433 10.925 4 Median 0.98531 0.99776 0.78352 2 0 Median 1.0482 0.83137 4.9608 2 0 Median 52632000 25205000 27427000 46936000 22498000 24438000 5695600 2706700 2988900 12831 1471 13186 33851;33852;33853;33854 52772;52773;52774;52775;52776;52777;52778;52779;52780 52776 9 TDEAFFDSENDPEK VKPFADTLDQVNISKTDEAFFDSENDPEKC KTDEAFFDSENDPEKCCLLLQFILNCLYKI K T D E K C 1 0 1 3 0 0 3 0 0 0 0 1 0 2 1 1 1 0 0 0 0 0 14 0 1642.6635 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1974 1987 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 2.3261E-05 97.163 2 2 1.0963 1.0844 5.4816 4 Linear 0.98801 1.0705 2.6828 2 0 Median 1.2109 0.9807 2.493 2 0 Median 107030000 50693000 56334000 89065000 42452000 46613000 17961000 8240600 9720300 12832 897 13187 33855;33856;33857;33858 52781;52782;52783;52784;52785;52786;52787;52788 52781 8 TDEFQLHTNVNDGTEFGGSIYQK AKSRVTQSNFAVGYKTDEFQLHTNVNDGTE NVNDGTEFGGSIYQKVNKKLETAVNLAWTA K T D Q K V 0 0 2 2 0 2 2 3 1 1 1 1 0 2 0 1 3 0 1 1 0 0 23 0 2599.1827 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 175 197 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 3 3.6886E-38 140.45 5 2 1.9126 1.9135 8.2214 7 Median 1.6661 1.9237 9.9374 5 0 Median 2.1735 1.8624 0.012334 2 0 Median 731900000 265260000 466640000 546520000 205800000 340730000 185370000 59466000 125910000 12833 639 13188 33859;33860;33861;33862;33863;33864;33865 52789;52790;52791;52792;52793;52794;52795;52796;52797;52798;52799;52800 52790 12 TDESLDWDSSLVK IDESGSILSDISFDKTDESLDWDSSLVKTF DKTDESLDWDSSLVKTFKLKKREKRRSTSR K T D V K T 0 0 0 3 0 0 1 0 0 0 2 1 0 0 0 3 1 1 0 1 0 0 13 0 1493.6886 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VQZ5;F8VV37;F8W1E5;F8W1T4 B2RE34 161 173 RACGAP1 Rac GTPase-activating protein 1 yes no 2 0.0054707 47.288 2 1.0224 0.86722 NaN 1 Median NaN NaN NaN 0 0 Median 1.0224 0.86722 NaN 1 0 Median 2640500 651910 1988600 0 0 0 2640500 651910 1988600 12834 68 13189 33866;33867 52801;52802 52801 2 TDFSLSISNSSDVSAK KKSPKVSSKDTREIKTDFSLSISNSSDVSA DFSLSISNSSDVSAKDKHAEDNEKRLAALE K T D A K D 1 0 1 2 0 0 0 0 0 1 1 1 0 1 0 6 1 0 0 1 0 0 16 0 1656.7843 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50 A0A024R250 742 757 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.0093452 33.968 1 1.6118 1.269 NaN 1 Median NaN NaN NaN 0 0 Median 1.6118 1.269 NaN 1 0 Median 5751500 1698400 4053100 0 0 0 5751500 1698400 4053100 12835 104 13190 33868 52803 52803 1 TDGENVFTGQSK ______________________________ KPRTDGENVFTGQSKIYSYMSPNKCSGMRF R T D S K I 0 0 1 1 0 1 1 2 0 0 0 1 0 1 0 1 2 0 0 1 0 0 12 0 1281.5837 E3VVS3;A0A0C4DFR3;Q9NQR1 E3VVS3 12 23 SETD8 N-lysine methyltransferase SETD8 yes no 2 0.00094564 73.951 2 1 2.1228 1.9355 20.124 2 Median 1.6571 1.6788 NaN 1 0 Median 2.7194 2.2315 NaN 1 0 Median 18130000 5609400 12521000 12967000 4149700 8817000 5163500 1459700 3703700 12836 505 13191 33869;33870;33871 52804;52805;52806;52807 52804 4 TDGTVEIYNLSANYFQEK CVAYNNQSNRLAVSRTDGTVEIYNLSANYF TVEIYNLSANYFQEKFFPGHESRATEALCW R T D E K F 1 0 2 1 0 1 2 1 0 1 1 1 0 1 0 1 2 0 2 1 0 0 18 0 2090.9797 Q969X6;H3BSH7;H3BPD7;I3L4T9 Q969X6 36 53 CIRH1A Cirhin yes no 2 2.1568E-39 155.66 2 2 1.135 1.0779 5.0593 4 Median 1.0267 1.1168 2.1274 2 0 Median 1.2348 1.0323 3.2245 2 0 Median 187780000 88052000 99732000 82665000 42961000 39705000 105120000 45091000 60027000 12837 1955 13192 33872;33873;33874;33875 52808;52809;52810;52811;52812;52813;52814;52815 52815 8 TDHPEIGEGKPTPALSEEASSSSIR LSVPAPAVQPEESLKTDHPEIGEGKPTPAL PTPALSEEASSSSIRERPPEEVAARLAQQE K T D I R E 2 1 0 1 0 0 4 2 1 2 1 1 0 0 3 5 2 0 0 0 0 0 25 1 2594.246 B4DS66;Q16891;B4DKR1;Q05DN3 Q16891 171 195 IMMT MICOS complex subunit MIC60 no no 4 6.6713E-07 53.998 2 1 1.3206 1.3023 30.944 2 Median 0.9038 1.0463 NaN 1 0 Median 1.9297 1.6208 NaN 1 0 Median 55299000 33948000 21352000 50502000 32123000 18379000 4797400 1824600 2972800 12838 1774;1029 13193 33876;33877;33878 52816;52817;52818;52819 52816 4 TDITYPAGFMDVISIDK KICMQRFIKIDGKVRTDITYPAGFMDVISI ITYPAGFMDVISIDKTGENFRLIYDTKGRF R T D D K T 1 0 0 3 0 0 0 1 0 3 0 1 1 1 1 1 2 0 1 1 0 0 17 0 1884.9179 B2R491;P62701;Q96IR1;Q53HV1 B2R491 78 94 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 3.4908E-07 97.551 4 3 1.978 2.285 78.371 4 Linear 1.8145 2.0413 1.2054 2 0 Median 0.64226 0.52542 2.4687 2 0 Median 295470000 128330000 167140000 218350000 93918000 124430000 77124000 34413000 42711000 12839 824 13194;13195 33879;33880;33881;33882;33883;33884;33885 52820;52821;52822;52823;52824;52825;52826;52827;52828;52829 52827 654 10 TDLDDDITALK AIKAKIMAKKRSTIKTDLDDDITALKQRSF STIKTDLDDDITALKQRSFVDAEVDVTRDI K T D L K Q 1 0 0 4 0 0 0 0 0 1 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1218.598 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9;B4DV47;A0A0S2Z5N1 Q6P1J9 199 209 CDC73 Parafibromin yes no 2 5.9298E-08 110.14 2 2 1.6944 1.6188 18.537 2 Median 1.6387 1.8455 NaN 1 0 Median 1.752 1.4199 NaN 1 0 Median 92275000 23748000 68527000 87211000 22871000 64340000 5063800 876740 4187100 12840 1851 13196 33886;33887;33888;33889 52830;52831;52832;52833;52834 52830 5 TDLDNSIGIK KKETKKANHKGSENKTDLDNSIGIKKMKTS GSENKTDLDNSIGIKKMKTSCKFKIDSNIS K T D I K K 0 0 1 2 0 0 0 1 0 2 1 1 0 0 0 1 1 0 0 0 0 0 10 0 1074.5557 Q9H501;A0JLU5;Q05C10;Q8IWH6 Q9H501 129 138 ESF1 ESF1 homolog yes no 2 0.012557 50.473 1 1.3876 1.43 NaN 1 Median 1.3876 1.43 NaN 1 0 Median NaN NaN NaN 0 0 Median 32586000 14116000 18470000 32586000 14116000 18470000 0 0 0 12841 2033 13197 33890 52835;52836 52835 2 TDLEMQIEGLK VNGLRRVLDELTLARTDLEMQIEGLKEELA TLARTDLEMQIEGLKEELAYLRKNHEEEML R T D L K E 0 0 0 1 0 1 2 1 0 1 2 1 1 0 0 0 1 0 0 0 0 0 11 0 1275.6381 B4DE59;K7EMS3;CON__P08779;P08779;B4DWU0;Q16195 CON__P08779 235 245 KRT19;KRT16;keratin Keratin, type I cytoskeletal 16 no no 2 4.0544E-09 116.52 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33411000 33411000 0 33411000 33411000 0 0 0 0 + 12842 1159;964 13198 33891;33892 52837;52838 52837 778 2 TDLLLEPYNK HIFYYLLSGAGEHLKTDLLLEPYNKYRFLS GEHLKTDLLLEPYNKYRFLSNGHVTIPGQQ K T D N K Y 0 0 1 1 0 0 1 0 0 0 3 1 0 0 1 0 1 0 1 0 0 0 10 0 1204.634 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 290 299 MYH9 Myosin-9 yes no 2 2.1642E-30 181.55 2 2 2.2243 2.1143 11.734 4 Median 1.663 1.9133 1.0208 2 0 Median 2.9444 2.3428 1.4038 2 0 Median 418900000 154140000 264760000 385290000 145420000 239870000 33610000 8727900 24882000 12843 81 13199 33893;33894;33895;33896 52839;52840;52841;52842;52843;52844;52845;52846 52839 8 TDLSTTVATPSSGLK PPPDPQLLVSESSQRTDLSTTVATPSSGLK TDLSTTVATPSSGLKKRPISRLQTRKNKKL R T D L K K 1 0 0 1 0 0 0 1 0 0 2 1 0 0 1 3 4 0 0 1 0 0 15 0 1476.7672 Q03164;B4E012 Q03164 3205 3219 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 8.7185E-06 93.959 2 2 1.3442 1.241 36.006 4 Median 0.86834 0.90657 1.3022 2 0 Median 2.0912 1.6911 0.66854 2 0 Median 56052000 26820000 29232000 40947000 21695000 19252000 15105000 5124900 9980200 12844 1680 13200 33897;33898;33899;33900 52847;52848;52849;52850;52851;52852;52853;52854 52848 8 TDMDNQIVVSDYAQMDR KAKIGLIQFCLSAPKTDMDNQIVVSDYAQM MDNQIVVSDYAQMDRVLREERAYILNLVKQ K T D D R V 1 1 1 4 0 2 0 0 0 1 0 0 2 0 0 1 1 0 1 2 0 0 17 0 1999.8615 B7Z9L0;A8K3C3;P50991;B7Z2F4;B7Z2Z8 B7Z9L0 202 218 CCT4 T-complex protein 1 subunit delta yes no 2 0.00010752 79.466 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12845 721 13201 33901 52855 52855 556;557 1 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK YGGGSEGGRAPKRLKTDNAGDQHGGGGGGG AGGGGGGENYDDPHKTPASPVVHIRGLIDG K T D H K T 4 0 2 4 0 1 1 17 2 0 0 1 0 0 1 0 1 0 1 0 0 0 35 0 2980.1953 B2R959;Q6NTA2;P14866 B2R959 32 66 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 3 0.0044188 21.958 1 1 1.1788 1.0961 72.592 2 Median 1.7262 1.8313 NaN 1 0 Median 0.80501 0.65602 NaN 1 0 Median 39028000 15362000 23667000 31468000 11300000 20168000 7560700 4061900 3498800 12846 865 13202 33902;33903 52856;52857 52856 2 TDNSSLSSPLNPK KNTGSPDRKPSKKSKTDNSSLSSPLNPKLW SKTDNSSLSSPLNPKLWCHVHLKKSLSGSP K T D P K L 0 0 2 1 0 0 0 0 0 0 2 1 0 0 2 4 1 0 0 0 0 0 13 0 1358.6678 Q9UIG0 Q9UIG0 323 335 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.1755E-09 116.77 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71534000 0 71534000 71534000 0 71534000 0 0 0 12847 2103 13203 33904;33905 52858;52859;52860 52859 3 TDPSTLTEEEVSK SEIQLARLKKLGINKTDPSTLTEEEVSKFA NKTDPSTLTEEEVSKFARLDIDPSTITWQR K T D S K F 0 0 0 1 0 0 3 0 0 0 1 1 0 0 1 2 3 0 0 1 0 0 13 0 1434.6726 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 483 495 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.00020673 89.266 1 1 0.91084 0.77323 NaN 1 Median NaN NaN NaN 0 0 Median 0.91084 0.77323 NaN 1 0 Median 11916000 653240 11263000 10466000 0 10466000 1450300 653240 797080 12848 418 13204 33906;33907 52861;52862;52863 52861 3 TDQADGPREPPQSAR ASSPETPSAGQQEAKTDQADGPREPPQSAR TDQADGPREPPQSARRKRSYKQAVSELDEE K T D A R R 2 2 0 2 0 2 1 1 0 0 0 0 0 0 3 1 1 0 0 0 0 0 15 1 1623.7601 Q9NQS7;B3KPD3 Q9NQS7 434 448 INCENP Inner centromere protein yes no 3 6.273E-07 83.54 2 2 1.4467 1.4139 25.581 4 Median 1.0296 1.1515 3.674 2 0 Median 2.0446 1.7802 7.224 2 0 Median 176540000 75934000 100610000 131120000 61573000 69546000 45421000 14361000 31060000 12849 2059 13205 33908;33909;33910;33911 52864;52865;52866;52867;52868;52869;52870;52871 52867 8 TDQFLVTDSGR SAGPEGLLGVEQSDKTDQFLVTDSGRTVIL QSDKTDQFLVTDSGRTVILYKVSDQKPLGS K T D G R T 0 1 0 2 0 1 0 1 0 0 1 0 0 1 0 1 2 0 0 1 0 0 11 0 1237.5939 Q9H8H0;J3QLQ6 Q9H8H0 31 41 NOL11 Nucleolar protein 11 yes no 2 5.1476E-10 129.88 2 1 0.92561 1.0302 0.076222 3 Median 0.91382 1.0297 0.078 2 0 Median 1.2424 1.0306 NaN 1 0 Median 181830000 95121000 86712000 174060000 91385000 82670000 7777500 3735300 4042200 12850 2042 13206 33912;33913;33914 52872;52873;52874;52875;52876 52873 5 TDSDEEVAMLLDTVQK LDILKEITGSSLIQKTDSDEEVAMLLDTVQ DSDEEVAMLLDTVQKVFQKMLECIARSFRK K T D Q K V 1 0 0 3 0 1 2 0 0 0 2 1 1 0 0 1 2 0 0 2 0 0 16 0 1792.8401 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 941 956 NCAPG2 Condensin-2 complex subunit G2 yes no 2 5.5816E-45 169.23 2 3 1.5902 1.4651 39.68 4 Median 0.95785 0.98837 43.025 2 0 Median 2.1183 1.6818 6.8605 2 0 Median 55774000 27075000 28698000 47301000 25237000 22064000 8472900 1838200 6634700 12851 1887 13207;13208 33915;33916;33917;33918;33919 52877;52878;52879;52880;52881;52882;52883;52884 52878 1734 8 TDSEATNIYLQLSK LTSLDIPATYLTGDKTDSEATNIYLQLSKK KTDSEATNIYLQLSKKDPIIKLLYVTPEKI K T D S K K 1 0 1 1 0 1 1 0 0 1 2 1 0 0 0 2 2 0 1 0 0 0 14 0 1581.7886 B2RAN0;P54132;H0YNU5;B7ZKN7;B7Z2X2 B2RAN0 742 755 BLM Bloom syndrome protein yes no 2 3.1308E-06 103.44 1 0.58726 0.59981 NaN 1 Median 0.58726 0.59981 NaN 1 0 Median NaN NaN NaN 0 0 Median 11984000 6867200 5117000 11984000 6867200 5117000 0 0 0 12852 873 13209 33920 52885;52886 52886 2 TDTESELDLISR RMFGIPVVVAVNAFKTDTESELDLISRLSR AFKTDTESELDLISRLSREHGAFDAVKCTH K T D S R L 0 1 0 2 0 0 2 0 0 1 2 0 0 0 0 2 2 0 0 0 0 0 12 0 1377.6624 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 761 772 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0033667 56.225 2 1.161 0.99608 0.93458 2 Median NaN NaN NaN 0 0 Median 1.161 0.99608 0.93458 2 0 Median 6023900 2613000 3410800 0 0 0 6023900 2613000 3410800 12853 196 13210 33921;33922 52887;52888 52887 2 TDTLEDLFPTTK DALIDSMSLAKKDEKTDTLEDLFPTTKIPN DEKTDTLEDLFPTTKIPNPRFQRLFQCLLH K T D T K I 0 0 0 2 0 0 1 0 0 0 2 1 0 1 1 0 4 0 0 0 0 0 12 0 1379.682 P13010;Q53T09 P13010 470 481 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 6.6917E-88 228.98 2 2 0.33548 0.33687 25.376 4 Median 0.35502 0.41785 1.3552 2 0 Median 0.31563 0.26948 2.4563 2 0 Median 844630000 621270000 223350000 690170000 505990000 184180000 154460000 115290000 39171000 12854 1476 13211 33923;33924;33925;33926 52889;52890;52891;52892;52893;52894;52895;52896;52897;52898;52899;52900;52901 52891 13 TDTLHVIGGTNK EDALDYLIGGLYHEKTDTLHVIGGTNKGRI HEKTDTLHVIGGTNKGRIHLMNCSMSGLTH K T D N K G 0 0 1 1 0 0 0 2 1 1 1 1 0 0 0 0 3 0 0 1 0 0 12 0 1254.6568 A0A024R667;Q96FK6 A0A024R667 286 297 C14orf150;WDR89 WD repeat-containing protein 89 yes no 2 0.00096888 86.243 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5351500 5351500 0 5351500 5351500 0 0 0 0 12855 198 13212 33927 52902 52902 1 TDTNVLYER DFFPERWFHIVFVLRTDTNVLYERLETR__ IVFVLRTDTNVLYERLETR___________ R T D E R L 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 2 0 1 1 0 0 9 0 1109.5353 A0A087WVD7;D6RDH4;Q9Y3D8 A0A087WVD7 97 105 TAF9;AK6 Adenylate kinase isoenzyme 6 yes no 2 9.3674E-12 155.84 2 0.96405 0.98618 NaN 1 Median 0.96405 0.98618 NaN 1 0 Median NaN NaN NaN 0 0 Median 34866000 18541000 16325000 34866000 18541000 16325000 0 0 0 12856 417 13213 33928;33929 52903;52904 52903 2 TDVLTGLSIR QEQEIDGKSLLLMQRTDVLTGLSIRLGPAL LLMQRTDVLTGLSIRLGPALKIYEHHIKVL R T D I R L 0 1 0 1 0 0 0 1 0 1 2 0 0 0 0 1 2 0 0 1 0 0 10 0 1073.6081 Q6SPF0;E9PIW9;F8WDT5 Q6SPF0 499 508 SAMD1 Atherin yes no 2 6.5225E-05 83.783 1 2 1.3886 1.193 NaN 1 Median NaN NaN NaN 0 0 Median 1.3886 1.193 NaN 1 0 Median 31908000 28428000 3479700 25494000 25494000 0 6413700 2934000 3479700 12857 1861 13214 33930;33931;33932 52905;52906;52907;52908 52908 4 TDYNASVSVPDSSGPER GAVIGKGGKNIKALRTDYNASVSVPDSSGP YNASVSVPDSSGPERILSISADIETIGEIL R T D E R I 1 1 1 2 0 0 1 1 0 0 0 0 0 0 2 4 1 0 1 2 0 0 17 0 1779.7911 B4DUQ1;A0A024R228;Q5EC54;P61978;Q5T6W2 B4DUQ1 70 86 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 4.4996E-18 131.35 2 1 1.8713 2.1328 44.711 3 Plateau 1.8446 2.0797 3.567 2 0 Median 1.149 0.95986 NaN 1 0 Median 202210000 71924000 130280000 186020000 64157000 121860000 16189000 7767400 8422000 12858 102 13215 33933;33934;33935 52909;52910;52911;52912;52913;52914 52911 6 TDYTLSIANR SCYFGQLLSKLDRIKTDYTLSIANRLYGEQ LDRIKTDYTLSIANRLYGEQEFPICQEYLD K T D N R L 1 1 1 1 0 0 0 0 0 1 1 0 0 0 0 1 2 0 1 0 0 0 10 0 1152.5775 Q96P63 Q96P63 108 117 SERPINB12 Serpin B12 yes yes 2 0.0092902 58.433 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12859 1982 13216 33936 52915 52915 1 TDYVVRPSTGEEK NEDSSDATTPVPRVRTDYVVRPSTGEEKRV VRTDYVVRPSTGEEKRVFQEQERYRYSQPH R T D E K R 0 1 0 1 0 0 2 1 0 0 0 1 0 0 1 1 2 0 1 2 0 0 13 1 1479.7205 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 506 518 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 4.7018E-09 124.42 2 0.66221 0.74172 20.291 2 Median 0.66221 0.74172 20.291 2 0 Median NaN NaN NaN 0 0 Median 22435000 14244000 8191300 22435000 14244000 8191300 0 0 0 12860 135 13217 33937;33938 52916;52917;52918;52919 52918 4 TEAEQQITEVFVLAER PENKGISLRSRRQNKTEAEQQITEVFVLAE EAEQQITEVFVLAERIEINRNEKKPMKTSP K T E E R I 2 1 0 0 0 2 4 0 0 1 1 0 0 1 0 0 2 0 0 2 0 0 16 0 1861.9422 P46013;B4DRH3 P46013 3099 3114 MKI67 Antigen KI-67 yes no 2 2.7923E-68 196.11 2 2 2.1412 2.1512 14.738 4 Median 1.6382 1.8887 0.73115 2 0 Median 2.8044 2.4377 0.0063833 2 0 Median 649490000 217600000 431890000 364370000 142470000 221890000 285130000 75127000 210000000 12861 1569 13218 33939;33940;33941;33942 52920;52921;52922;52923;52924;52925;52926;52927;52928 52922 9 TEAESWYQTK AEVKAQYEEIANRSRTEAESWYQTKYEELQ ANRSRTEAESWYQTKYEELQQTAGRHGDDL R T E T K Y 1 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 10 0 1241.5564 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;H0YIN9 CON__P13647 355 364 KRT5 Keratin, type II cytoskeletal 5 no no 2 3.3081E-11 121.64 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50239000 50239000 0 46883000 46883000 0 3355800 3355800 0 + 12862 1162 13219 33943;33944 52929;52930 52929 2 TEALTQAFR TAIAGSEIFSLEMSKTEALTQAFRRSIGVR SLEMSKTEALTQAFRRSIGVRIKEETEIIE K T E F R R 2 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 2 0 0 0 0 0 9 0 1035.5349 Q9Y230;B3KNL2;M0R0Y3;B4DW30;X6R2L4;M0QXI6 Q9Y230 116 124 RUVBL2 RuvB-like 2 yes no 2 1.0447E-11 155 2 2 1.0978 0.92977 4.5817 3 Median 0.8062 0.92977 NaN 1 0 Median 1.1295 0.95163 6.1957 2 0 Median 66325000 34376000 31949000 54893000 28899000 25993000 11433000 5477100 5955800 12863 2120 13220 33945;33946;33947;33948 52931;52932;52933;52934;52935;52936;52937 52933 7 TECYITGWGETQGTFGEGLLK IPACLPPPNYMVAARTECYITGWGETQGTF GWGETQGTFGEGLLKEAHLPVIENKVCNRN R T E L K E 0 0 0 0 1 1 3 5 0 1 2 1 0 1 0 0 4 1 1 0 0 0 21 0 2346.0838 CON__P06868 CON__P06868 699 719 yes yes 2 0.016938 33.204 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15520000 15520000 0 9578000 9578000 0 5941700 5941700 0 + 12864 1157 13221 33949;33950;33951 52938;52939;52940 52938 3 TEDFIIDTLELR RSFLGLTCLMQISTRTEDFIIDTLELRSDM STRTEDFIIDTLELRSDMYILNESLTDPAI R T E L R S 0 1 0 2 0 0 2 0 0 2 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1463.7508 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 335 346 EXOSC10 Exosome component 10 yes no 2 9.786E-18 140.16 2 2 0.9911 0.83501 6.994 3 Median 0.78833 0.8027 NaN 1 0 Median 1.0624 0.87628 6.8232 2 0 Median 68052000 43652000 24400000 47482000 33062000 14420000 20570000 10591000 9979700 12865 1676 13222 33952;33953;33954;33955 52941;52942;52943;52944;52945;52946;52947;52948;52949;52950;52951 52941 11 TEDGGEFEEGASENNAK GMAFEEPIDEKKFEKTEDGGEFEEGASENN DGGEFEEGASENNAKESSPEKEAEEGCPEK K T E A K E 2 0 2 1 0 0 5 3 0 0 0 1 0 1 0 1 1 0 0 0 0 0 17 0 1782.718 O43719;B4DRS4 O43719 434 450 HTATSF1 HIV Tat-specific factor 1 yes no 2 2.2785E-57 183.06 2 1 1.7723 1.7919 54.645 3 Plateau 1.7413 1.791 0.073767 2 0 Median 0.86495 0.69509 NaN 1 0 Median 30963000 12842000 18121000 28475000 11680000 16795000 2488100 1162300 1325800 12866 1388 13223 33956;33957;33958 52952;52953;52954;52955;52956;52957 52953 6 TEDLFENR LSSFPPLPGAAGNLKTEDLFENRLSSLIIG GAAGNLKTEDLFENRLSSLIIGPSKERTLS K T E N R L 0 1 1 1 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 8 0 1022.4669 Q92615;H0Y641;H0Y4V9 Q92615 546 553 LARP4B La-related protein 4B yes no 2 0.01413 70.919 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5606400 0 5606400 5606400 0 5606400 0 0 0 12867 1949 13224 33959 52958 52958 1 TEDPDLPAFYFDPLINPISHR VHLTWYHTPNVVFIKTEDPDLPAFYFDPLI PAFYFDPLINPISHRHSVKSQEPLPDDDEE K T E H R H 1 1 1 3 0 0 1 0 1 2 2 0 0 2 4 1 1 0 1 0 0 0 21 0 2456.2012 Q6P2Q9;I3L0J9 Q6P2Q9 342 362 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 3.5195E-16 108.18 2 0.90326 0.95589 3.1744 2 Median 0.90326 0.95589 3.1744 2 0 Median NaN NaN NaN 0 0 Median 65048000 31002000 34046000 65048000 31002000 34046000 0 0 0 12868 1854 13225 33960;33961 52959;52960;52961;52962;52963;52964;52965;52966 52965 8 TEEADLLQTK TAEKYRQLKQQWEMKTEEADLLQTKLQQSS QWEMKTEEADLLQTKLQQSSYHKQQEELDA K T E T K L 1 0 0 1 0 1 2 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 10 0 1146.5768 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 723 732 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 8.0992E-17 161.28 2 0.87136 1.0271 4.7779 2 Median 0.87136 1.0271 4.7779 2 0 Median NaN NaN NaN 0 0 Median 819910000 441030000 378880000 819910000 441030000 378880000 0 0 0 12869 69 13226 33962;33963 52967;52968;52969;52970;52971 52971 5 TEEASSGFLPGDR IYQYRRPVDSYDIPKTEEASSGFLPGDRNK PKTEEASSGFLPGDRNKSRSTTELDDYSTN K T E D R N 1 1 0 1 0 0 2 2 0 0 1 0 0 1 1 2 1 0 0 0 0 0 13 0 1364.6208 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2;E9PMP7;H0Y424 A0A1P7ZIM8 1020 1032 LMO7 LIM domain only protein 7 yes no 2 5.139E-06 101.93 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11708000 0 11708000 8212600 0 8212600 3495100 0 3495100 12870 640 13227 33964;33965;33966 52972;52973;52974 52972 3 TEEELQAILEAK GVGEGKVMFHSFVSKTEEELQAILEAKEKK VSKTEEELQAILEAKEKKLRLKAQRQAQQA K T E A K E 2 0 0 0 0 1 4 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1372.7086 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 304 315 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 8.6582E-60 201.33 2 2 1.0137 0.96857 9.554 4 Median 0.80894 0.895 0.31079 2 0 Median 1.2804 1.0555 1.2944 2 0 Median 207500000 103460000 104040000 135450000 73099000 62347000 72051000 30358000 41692000 12871 493 13228 33967;33968;33969;33970 52975;52976;52977;52978;52979;52980;52981 52977 7 TEEGEIDYSAEEGENRR YEEDREYESQAKRLKTEEGEIDYSAEEGEN EGEIDYSAEEGENRREATPRGGGDGGGGGR K T E R R E 1 2 1 1 0 0 6 2 0 1 0 0 0 0 0 1 1 0 1 0 0 0 17 1 1982.8454 B7WPG3;C9IYN3;A8K894;D6W592;A0A0S2Z6K1;A0A0S2Z5U3;Q8WVV9;A0A0S2Z610 B7WPG3 27 43 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 3 0.05425 15.844 2 1.0092 0.91361 17.777 2 Median NaN NaN NaN 0 0 Median 1.0092 0.91361 17.777 2 0 Median 2687900 1517100 1170700 0 0 0 2687900 1517100 1170700 12872 586 13229 33971;33972 52982;52983 52982 1 TEEGPTLSYGR PENLPQILLQLKRRRTEEGPTLSYGRDGRS KRRRTEEGPTLSYGRDGRSATREPPYRVPR R T E G R D 0 1 0 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 1 0 0 0 11 0 1208.5673 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991 D6REM6 150 160 MATR3;DKFZp686K23100 Matrin-3 yes no 2 3.6116E-06 111.31 2 2 1.8023 1.6572 24.217 4 Linear 1.7709 2.0278 1.1336 2 0 Median 1.5795 1.3349 3.1784 2 0 Median 170990000 64524000 106470000 158490000 60892000 97598000 12505000 3632000 8873000 12873 542 13230 33973;33974;33975;33976 52984;52985;52986;52987;52988;52989;52990;52991;52992 52984 9 TEEIAEEEETVFPK QTEEKEKKEKPKSDKTEEIAEEEETVFPKA KTEEIAEEEETVFPKAKQVKKKAEPSEVDM K T E P K A 1 0 0 0 0 0 6 0 0 1 0 1 0 1 1 0 2 0 0 1 0 0 14 0 1649.7672 Q9NR30;Q3SWU7 Q9NR30 41 54 DDX21 Nucleolar RNA helicase 2 yes no 2 1.2609E-131 237.84 1 2 1.3924 1.1221 0.095252 2 Median NaN NaN NaN 0 0 Median 1.3924 1.1221 0.095252 2 0 Median 124280000 17607000 106670000 78054000 0 78054000 46226000 17607000 28619000 12874 2065 13231 33977;33978;33979 52993;52994;52995;52996;52997;52998 52993 6 TEEIDAVFHGAVWPQISR MVTDIFLDWESYQFRTEEIDAVFHGAVWPQ IDAVFHGAVWPQISRLGSESQYSPTPLLKL R T E S R L 2 1 0 1 0 1 2 1 1 2 0 0 0 1 1 1 1 1 0 2 0 0 18 0 2054.0221 O75691 O75691 1173 1190 UTP20 Small subunit processome component 20 homolog yes yes 3 4.4844E-12 91.457 2 2 1.3893 1.2763 11.728 4 Median 1.1242 1.1443 9.6305 2 0 Median 1.618 1.3636 3.5434 2 0 Median 64748000 27314000 37433000 48774000 21428000 27346000 15974000 5886000 10088000 12875 1412 13232 33980;33981;33982;33983 52999;53000;53001;53002;53003;53004;53005;53006 53000 8 TEELEEESFPER EGLVYAPPGKEKQRKTEELEEESFPERSKK QRKTEELEEESFPERSKKEDRGKRSEGGHR K T E E R S 0 1 0 0 0 0 6 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1493.6522 Q9Y2W1 Q9Y2W1 487 498 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 1.2943E-48 199.11 2 2 1.172 1.1297 4.6033 4 Median 1.0432 1.1845 3.745 2 0 Median 1.3073 1.1041 0.30085 2 0 Median 207450000 97002000 110440000 191510000 89880000 101630000 15932000 7121700 8810700 12876 2128 13233 33984;33985;33986;33987 53007;53008;53009;53010;53011;53012;53013;53014 53007 8 TEELKPQVEEK ESSHEPEPEPESETKTEELKPQVEEKNLEE SETKTEELKPQVEEKNLEELEEKSTTPPPA K T E E K N 0 0 0 0 0 1 4 0 0 0 1 2 0 0 1 0 1 0 0 1 0 0 11 1 1328.6824 A0A024RDB2;A0A024RDE5;Q9UN86;A8K6V7 A0A024RDB2 206 216 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 2 0.030082 58.63 1 2.1014 2.5026 NaN 1 Median 2.1014 2.5026 NaN 1 0 Median NaN NaN NaN 0 0 Median 17770000 6000900 11769000 17770000 6000900 11769000 0 0 0 12877 382 13234 33988 53015 53015 0 TEELNREVATNSELVQSGK AEKNRKDAEEWFFTKTEELNREVATNSELV NREVATNSELVQSGKSEISELRRTMQNLEI K T E G K S 1 1 2 0 0 1 4 1 0 0 2 1 0 0 0 2 2 0 0 2 0 0 19 1 2103.0444 CON__P02533;P02533;A0A024R1X6;CON__Q04695;Q04695;F5GWP8;Q14666;K7ESE1 CON__P02533 310 328 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 3 0.028527 27.904 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 12878 1150;1168 13235 33989 53016 53016 1 TEESDFLLLVLK LQGVSHIIVDEVHERTEESDFLLLVLKDIV HERTEESDFLLLVLKDIVSQRPGLQVILMS R T E L K D 0 0 0 1 0 0 2 0 0 0 4 1 0 1 0 1 1 0 0 1 0 0 12 0 1405.7704 Q6P158;Q59G60;B4DKW2 Q6P158 674 685 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2 1.6108E-12 127.3 2 0.90286 0.99984 18.48 2 Median 0.90286 0.99984 18.48 2 0 Median NaN NaN NaN 0 0 Median 5548800 3229100 2319700 5548800 3229100 2319700 0 0 0 12879 1850 13236 33990;33991 53017;53018;53019;53020 53019 4 TEFLSLLAK LHEQEYDSLLESVFKTEFLSLLAKRYEEKT LESVFKTEFLSLLAKRYEEKTQKQLPLKFS K T E A K R 1 0 0 0 0 0 1 0 0 0 3 1 0 1 0 1 1 0 0 0 0 0 9 0 1020.5855 Q4KMR3;Q12965 Q4KMR3 851 859 MYO1E Unconventional myosin-Ie yes no 2 0.0027333 79.906 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13456000 13456000 0 13456000 13456000 0 0 0 0 12880 1703 13237 33992;33993 53021;53022 53022 2 TEFTLTEAVVESSR LTPLESAINVLEMIKTEFTLTEAVVESSRK KTEFTLTEAVVESSRKLVKEAAVIICIKNK K T E S R K 1 1 0 0 0 0 3 0 0 0 1 0 0 1 0 2 3 0 0 2 0 0 14 0 1567.773 Q15554;H3BR06;J3KSZ6;H3BTA7;V9GYM1 Q15554 183 196 TERF2 Telomeric repeat-binding factor 2 yes no 2 0.0012284 68.44 1 2 1.1674 0.99475 17.149 2 Median NaN NaN NaN 0 0 Median 1.1674 0.99475 17.149 2 0 Median 5756900 2431000 3325900 0 0 0 5756900 2431000 3325900 12881 1762 13238 33994;33995;33996 53023;53024;53025 53025 3 TEGFIGLNSVHCVQGSYPPLLLK ISKELSLLSGEVCNRTEGFIGLNSVHCVQG SVHCVQGSYPPLLLKAWDHYNSTKGSANDR R T E L K A 0 0 1 0 1 1 1 3 1 1 4 1 0 1 2 2 1 0 1 2 0 0 23 0 2528.3097 A0PJ70;A8K9K0;Q8TF76 A0PJ70 553 575 GSG2 Serine/threonine-protein kinase haspin yes no 3 0.001267 25.935 1 1.7847 1.3939 NaN 1 Median NaN NaN NaN 0 0 Median 1.7847 1.3939 NaN 1 0 Median 3429500 1291800 2137600 0 0 0 3429500 1291800 2137600 12882 646 13239 33997 53026 53026 1 TEGSLEDWDIAVQK DYPEHVCEVLLTMERTEGSLEDWDIAVQKT RTEGSLEDWDIAVQKTETRLARVNEQRMKA R T E Q K T 1 0 0 2 0 1 2 1 0 1 1 1 0 0 0 1 1 1 0 1 0 0 14 0 1589.7573 Q15020;B4DYA2;B4DRG9;F8VV04;B4E3R6 Q15020 555 568 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0024097 63.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12883 1748 13240 33998 53027 53027 1 TEGTAHSSNTSDVDFTGASSAK ISENPTLDLPCSIGRTEGTAHSSNTSDVDF SNTSDVDFTGASSAKETTSSSISRHYGLSD R T E A K E 3 0 1 2 0 0 1 2 1 0 0 1 0 1 0 5 4 0 0 1 0 0 22 0 2168.9458 Q9Y483;Q96G26;B4DZG1 Q9Y483 442 463 MTF2 Metal-response element-binding transcription factor 2 yes no 3 1.1823E-07 56.882 2 2 1.6731 1.4627 25.465 4 Median 1.1971 1.1922 0.57724 2 0 Median 2.3093 1.8483 4.7606 2 0 Median 73830000 32077000 41753000 47944000 23968000 23976000 25886000 8109100 17777000 12884 2143 13241 33999;34000;34001;34002 53028;53029;53030;53031;53032;53033;53034;53035;53036 53030 9 TEIIILATR EDGYSGVEVRVTPTRTEIIILATRTQNVLG RVTPTRTEIIILATRTQNVLGEKGRRIREL R T E T R T 1 1 0 0 0 0 1 0 0 3 1 0 0 0 0 0 2 0 0 0 0 0 9 0 1028.623 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;H0YEU2;E9PQ96;E9PJH4;E9PK82 P23396 46 54 RPS3 40S ribosomal protein S3 yes no 2 2.643E-17 165.72 3 2 1.0926 1.2921 22.312 5 Median 1.1326 1.3214 2.2941 3 0 Median 1.0615 0.8807 1.3081 2 0 Median 905730000 422600000 483130000 876770000 408810000 467960000 28962000 13793000 15168000 12885 1511 13242 34003;34004;34005;34006;34007 53037;53038;53039;53040;53041;53042;53043;53044;53045;53046;53047;53048 53041 12 TEIISEVNHLDNDK ESKVNKKLRQKVNRKTEIISEVNHLDNDKS KTEIISEVNHLDNDKSIEYTVKSHSLFLTQ K T E D K S 0 0 2 2 0 0 2 0 1 2 1 1 0 0 0 1 1 0 0 1 0 0 14 0 1625.7897 Q562F6;B7Z7S9 Q562F6 720 733 SGOL2 Shugoshin-like 2 yes no 2;3 0.00028196 81.92 4 2 2.0457 1.6105 8.2452 2 Median NaN NaN NaN 0 0 Median 2.0457 1.6105 8.2452 2 0 Median 10444000 2134200 8309900 4075400 0 4075400 6368700 2134200 4234500 12886 1795 13243 34008;34009;34010;34011;34012;34013 53049;53050;53051;53052;53053;53054 53051 6 TEILPPFFK KQCCGTDGVEANYIKTEILPPFFKHFWQHR EANYIKTEILPPFFKHFWQHRMALDRRNYR K T E F K H 0 0 0 0 0 0 1 0 0 1 1 1 0 2 2 0 1 0 0 0 0 0 9 0 1090.6063 O75533 O75533 808 816 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.0062893 64.567 2 2 0.91562 0.84437 52.272 4 Median 1.2812 1.3291 7.4134 2 0 Median 0.65183 0.54035 6.378 2 0 Median 38636000 16657000 21979000 34776000 14235000 20541000 3860100 2422900 1437100 12887 1408 13244 34014;34015;34016;34017 53055;53056;53057;53058;53059;53060;53061;53062 53059 8 TEIMSPLYQDEAPK QQKQQLPQTPPSCLKTEIMSPLYQDEAPKG KTEIMSPLYQDEAPKGTEASSGTEAATGLE K T E P K G 1 0 0 1 0 1 2 0 0 1 1 1 1 0 2 1 1 0 1 0 0 0 14 0 1620.7705 Q8IY81;B4DKU3 Q8IY81 580 593 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.00039263 58.172 1 1.0308 0.8398 NaN 1 Median NaN NaN NaN 0 0 Median 1.0308 0.8398 NaN 1 0 Median 6711200 3497400 3213800 0 0 0 6711200 3497400 3213800 12888 1898 13245 34018 53063 53063 1742 1 TEIVFTGEK ETGTRINIPPPSVNRTEIVFTGEKEQLAQA PPSVNRTEIVFTGEKEQLAQAVARIKKIYE R T E E K E 0 0 0 0 0 0 2 1 0 1 0 1 0 1 0 0 2 0 0 1 0 0 9 0 1022.5284 A0A024R4E5;Q00341;B4DKR8;H0Y394;Q6ZS03;H7C0A4;Q5HYC5 A0A024R4E5 266 274 HDLBP;DKFZp686L08115 Vigilin yes no 2 0.0019814 78.334 2 1.9803 2.0508 25.465 2 Median 1.9803 2.0508 25.465 2 0 Median NaN NaN NaN 0 0 Median 59446000 20511000 38935000 59446000 20511000 38935000 0 0 0 12889 154 13246 34019;34020 53064;53065 53065 2 TEKPPPEPGKPK CCEHDLGAASVRSTKTEKPPPEPGKPKGKR STKTEKPPPEPGKPKGKRRRRRGWRRVTEG K T E P K G 0 0 0 0 0 0 2 1 0 0 0 3 0 0 5 0 1 0 0 0 0 0 12 2 1303.7136 O96028 O96028 1338 1349 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2;3 0.0006687 67.252 3 0.80267 0.96613 59.485 3 Median 0.80267 0.96613 59.485 3 0 Median NaN NaN NaN 0 0 Median 48174000 25867000 22307000 48174000 25867000 22307000 0 0 0 12890 1435 13247 34021;34022;34023 53066;53067;53068 53066 3 TELEDTLDSTAAQQELR EKQKRDLGEELEALKTELEDTLDSTAAQQE LEDTLDSTAAQQELRSKREQEVNILKKTLE K T E L R S 2 1 0 2 0 2 3 0 0 0 3 0 0 0 0 1 3 0 0 0 0 0 17 0 1918.912 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1146 1162 MYH9 Myosin-9 yes no 2 5.157E-57 196.57 3 2 2.1541 2.1546 26.876 4 Median 1.4896 1.7234 1.6888 2 0 Median 3.1704 2.7393 4.0576 2 0 Median 437790000 155570000 282220000 364700000 137830000 226880000 73087000 17748000 55340000 12891 81 13248 34024;34025;34026;34027;34028 53069;53070;53071;53072;53073;53074;53075;53076;53077;53078 53072 10 TELFIAAEGIHTGQFVYCGK LAKVVFRDPYRFKKRTELFIAAEGIHTGQF AAEGIHTGQFVYCGKKAQLNIGNVLPVGTM R T E G K K 2 0 0 0 1 1 2 3 1 2 1 1 0 2 0 0 2 0 1 1 0 0 20 0 2240.0936 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 73 92 RPL8 60S ribosomal protein L8 yes no 2;3 6.1118E-19 100.97 2 4 0.92281 0.75597 14.933 6 Median 0.95044 0.98358 6.3897 2 0 Median 0.9201 0.74037 2.1942 4 0 Median 101980000 52702000 49275000 43996000 23009000 20987000 57981000 29693000 28288000 12892 1653 13249 34029;34030;34031;34032;34033;34034 53079;53080;53081;53082;53083;53084;53085;53086;53087 53082 9 TELGLDLGLEPK ARLREMLSVGLGFLRTELGLDLGLEPKRYP FLRTELGLDLGLEPKRYPGWVILVGTGALG R T E P K R 0 0 0 1 0 0 2 2 0 0 4 1 0 0 1 0 1 0 0 0 0 0 12 0 1283.6973 A0A024R9D2;Q86UE4;E5RJU9 A0A024R9D2 34 45 MTDH Protein LYRIC yes no 2 0.0053097 76.143 2 2 0.4782 0.38788 NaN 1 Median NaN NaN NaN 0 0 Median 0.4782 0.38788 NaN 1 0 Median 10037000 9001300 1036000 3330900 3330900 0 6706300 5670300 1036000 12893 275 13250 34035;34036;34037;34038 53088;53089;53090;53091 53089 4 TELHGQLISVEK SSSTEVSRCIAHLHRTELHGQLISVEKVKG LHRTELHGQLISVEKVKGDPSKKEMKK___ R T E E K V 0 0 0 0 0 1 2 1 1 1 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1352.73 H7BXE3;A0A024R5X3;Q9NWH9;H7C3F4;A0A024R5U7 H7BXE3 430 441 SLTM SAFB-like transcription modulator yes no 2 0.032252 46.73 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4174100 0 4174100 4174100 0 4174100 0 0 0 12894 190 13251 34039 53092 53092 1 TELTQIK SAKIKLKSSELQAIKTELTQIKSNIDALLS SSELQAIKTELTQIKSNIDALLSRLEQIAA K T E I K S 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 831.47018 A8K4T9;Q53GL6;Q5QPL9;Q9UKM9;Q5QPM0 A8K4T9 176 182 RALY RNA-binding protein Raly yes no 2 0.026944 83.377 1 0.97945 0.97862 NaN 1 Median 0.97945 0.97862 NaN 1 0 Median NaN NaN NaN 0 0 Median 26526000 12801000 13725000 26526000 12801000 13725000 0 0 0 12895 741 13252 34040 53093;53094 53093 2 TEMENEFVLIK VEDFKNKYEDEINKRTEMENEFVLIKKDVD INKRTEMENEFVLIKKDVDEAYMNKVELES R T E I K K 0 0 1 0 0 0 3 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 11 0 1351.6694 CON__P05787;P05787;Q969I0;F8VUG2;F8W1U3;F8VP67;CON__H-INV:HIT000016045 CON__P05787 187 197 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.00012122 90.629 2 4 1.3347 1.4964 32.447 6 Median 1.3347 1.4964 1.3607 2 0 Median 1.6485 1.3025 40.895 4 0 Median 199240000 91852000 107390000 178040000 83118000 94924000 21200000 8734200 12465000 + 12896 1156 13253;13254 34041;34042;34043;34044;34045;34046 53095;53096;53097;53098;53099;53100;53101;53102;53103;53104 53097 867 10 TEMQDNTYPEILR RPGKCFRLYTEKAYKTEMQDNTYPEILRSN YKTEMQDNTYPEILRSNLGSVVLQLKKLGI K T E L R S 0 1 1 1 0 1 2 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 13 0 1608.7454 O43143;B4E0S6 O43143 492 504 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 9.3661E-06 99.283 2 0.25992 0.29286 12.18 2 Median 0.25992 0.29286 12.18 2 0 Median NaN NaN NaN 0 0 Median 175300000 134890000 40408000 175300000 134890000 40408000 0 0 0 12897 1379 13255 34047;34048 53105;53106 53105 1047 2 TENNDHINLK ______________________________ KEGVKTENNDHINLKVAGQDGSVVQFKIKR K T E L K V 0 0 3 1 0 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1196.5786 A0A024R8S3;P61956 A0A024R8S3 12 21 SUMO2 Small ubiquitin-related modifier;Small ubiquitin-related modifier 2 yes no 2;3 3.2091E-66 225.68 3 2 0.84338 0.96544 19.787 4 Median 0.82807 0.96195 3.4492 3 0 Median 1.7262 1.4004 NaN 1 0 Median 495800000 249250000 246550000 456570000 239250000 217320000 39230000 10003000 29227000 12898 256 13256 34049;34050;34051;34052;34053 53107;53108;53109;53110;53111;53112;53113;53114 53109 8 TENPLILIDEVDK GAMPGKIIQCLKKTKTENPLILIDEVDKIG TKTENPLILIDEVDKIGRGYQGDPSSALLE K T E D K I 0 0 1 2 0 0 2 0 0 2 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1497.7926 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776 K7EJE8 452 464 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 5.515E-05 96.306 2 2 2.5121 2.2072 57.409 4 Median 3.5705 3.6554 13.668 2 0 Median 1.7545 1.3716 9.5995 2 0 Median 50468000 15451000 35017000 43589000 12757000 30832000 6879200 2693700 4185500 12899 946 13257 34054;34055;34056;34057 53115;53116;53117;53118;53119;53120 53116 6 TENSLANENQQPIK LSRELSKELNHEIQRTENSLANENQQPIKS RTENSLANENQQPIKSEPESEGEEPKRPPG R T E I K S 1 0 3 0 0 2 2 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 14 0 1584.7744 A0A0C4DGG3;B7ZB05;B4DSN4;Q8NHM5 A0A0C4DGG3 329 342 KDM2B Lysine-specific demethylase 2B yes no 2 0.0094553 36.982 1 0.95629 0.79967 NaN 1 Median NaN NaN NaN 0 0 Median 0.95629 0.79967 NaN 1 0 Median 1525400 676840 848530 0 0 0 1525400 676840 848530 12900 513 13258 34058 53121;53122 53122 2 TEPATGFIDGDLIESFLDISRPK KIEHSFWRSFHTERKTEPATGFIDGDLIES DGDLIESFLDISRPKMQEVVANLQYDDGSG K T E P K M 1 1 0 3 0 0 2 2 0 3 2 1 0 2 2 2 2 0 0 0 0 0 23 1 2520.2748 Q16531;B4DSA8;B4DZP5 Q16531 1082 1104 DDB1 DNA damage-binding protein 1 yes no 3 6.628E-30 128.12 2 0.70314 0.8421 2.3399 2 Median 0.70314 0.8421 2.3399 2 0 Median NaN NaN NaN 0 0 Median 475820000 251130000 224690000 475820000 251130000 224690000 0 0 0 12901 1770 13259 34059;34060 53123;53124;53125 53124 3 TEPEEVSIEDSAQSDLK TPSSSFLTTLKPRLKTEPEEVSIEDSAQSD PEEVSIEDSAQSDLKEVMVLNATESFVYEP K T E L K E 1 0 0 2 0 1 4 0 0 1 1 1 0 0 1 3 1 0 0 1 0 0 17 0 1875.8585 D3DUZ3;Q16666;A0A0A0MRB1 D3DUZ3 510 526 IFI16 Gamma-interferon-inducible protein 16 yes no 2 0.00079329 83.204 3 1 1.2711 1.0185 NaN 1 Median NaN NaN NaN 0 0 Median 1.2711 1.0185 NaN 1 0 Median 22509000 17759000 4749600 14097000 14097000 0 8412400 3662800 4749600 12902 1196 13260 34061;34062;34063;34064 53126;53127;53128;53129;53130 53126 5 TEQCLVALLHK VYNCRGSHVLSCMVKTEQCLVALLHKHLPG CMVKTEQCLVALLHKHLPGHPYVRRKRKKF K T E H K H 1 0 0 0 1 1 1 0 1 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1310.7017 Q9UIG0 Q9UIG0 1432 1442 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.01543 43.897 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70766000 0 70766000 70766000 0 70766000 0 0 0 12903 2103 13261 34065;34066 53131;53132 53131 2 TEQEEDEELLTESSK EKQNLLSVGDYRHRRTEQEEDEELLTESSK TEQEEDEELLTESSKATNVCTRFEDSPSYV R T E S K A 0 0 0 1 0 1 6 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 15 0 1765.7741 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 146 160 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 2.1598E-47 180.09 2 2 3.9062 3.8233 24.955 4 Median 2.7045 3.0515 3.5478 2 0 Median 5.5521 4.6943 0.68884 2 0 Median 325390000 80206000 245180000 208840000 61024000 147820000 116540000 19182000 97361000 12904 1391 13262 34067;34068;34069;34070 53133;53134;53135;53136;53137;53138;53139;53140;53141;53142 53137 10 TEQEVVEGMDISTR ______________________________ KTEQEVVEGMDISTRSKDPGSAERTAQKRK K T E T R S 0 1 0 1 0 1 3 1 0 1 0 0 1 0 0 1 2 0 0 2 0 0 14 0 1592.7352 A0A087WVZ6;A6H8Y8;Q2HXV5;Q569J9 A0A087WVZ6 13 26 ZMYND8 yes no 2 3.6252E-05 89.301 3 0.9216 0.92952 NaN 1 Median 0.9216 0.92952 NaN 1 0 Median NaN NaN NaN 0 0 Median 6153000 3288300 2864600 6153000 3288300 2864600 0 0 0 12905 422 13263 34071;34072;34073 53143;53144;53145 53145 310 3 TEQGEEEEEEEDEEEEEK PGFPRDGDYRDQDYRTEQGEEEEEEEDEEE GEEEEEEEDEEEEEKASNIVMLRMLPQAAT R T E E K A 0 0 0 1 0 1 13 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 18 0 2224.8139 A0A0S2Z4W4;Q7Z3D7;A0A0A0MR66;P98175 A0A0S2Z4W4 109 126 DKFZp686E2459;RBM10 RNA-binding protein 10 yes no 2 3.9008E-05 67.275 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3091900 0 3091900 3091900 0 3091900 0 0 0 12906 464 13264 34074 53146 53146 1 TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR FQDNHEDGPTAKKLKTEQGGAHFSVSSLAE SVTSVGSVNPAENFRVLVKQKKASFEEASN K T E F R V 3 1 2 0 0 1 3 4 1 0 1 0 0 2 1 6 2 0 0 4 0 0 31 0 3120.4748 P13010;Q53T09 P13010 569 599 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 8.4468E-31 93.043 2 2 0.3178 0.31671 23.568 4 Median 0.34463 0.38981 3.4921 2 0 Median 0.29855 0.2597 2.1832 2 0 Median 548930000 417910000 131020000 218820000 163490000 55332000 330110000 254420000 75692000 12907 1476 13265 34075;34076;34077;34078 53147;53148;53149;53150;53151;53152;53153;53154;53155;53156 53153 10 TEQLGLTR DEMEESTNRPRKKQKTEQLGLTRTPIVTLS RPRKKQKTEQLGLTRTPIVTLSGHMEAVSS K T E T R T 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 2 0 0 0 0 0 8 0 916.49779 Q53T99;Q9GZL7;B4DRY7 Q53T99 240 247 WDR12 Ribosome biogenesis protein WDR12 yes no 2 0.0010346 113.5 2 2 1.1399 1.1715 6.4935 4 Linear 1.02 1.1527 3.6093 2 0 Median 1.2669 1.0374 1.5528 2 0 Median 264610000 122950000 141650000 234570000 109700000 124870000 30032000 13250000 16782000 12908 1792 13266 34079;34080;34081;34082 53157;53158;53159;53160;53161;53162;53163;53164;53165 53158 9 TERPSGPGGEMGVCEK NRHLANVTQLVKQLRTERPSGPGGEMGVCE ERPSGPGGEMGVCEKHREPLKLYCEEDQMP R T E E K H 0 1 0 0 1 0 3 4 0 0 0 1 1 0 2 1 1 0 0 1 0 0 16 1 1689.7451 P14373;Q59EC6;A0A0G2JIZ4 P14373 83 98 TRIM27 Zinc finger protein RFP yes no 3 0.00036347 45.14 1 1.3113 1.4425 NaN 1 Median 1.3113 1.4425 NaN 1 0 Median NaN NaN NaN 0 0 Median 4218200 1328600 2889600 4218200 1328600 2889600 0 0 0 12909 1480 13267 34083 53166 53166 1237 1 TESPATAAETASEELDNR DGASSDAEPEPPSGRTESPATAAETASEEL PATAAETASEELDNRSLEEILNSIPPPPPP R T E N R S 4 1 1 1 0 0 4 0 0 0 1 0 0 0 1 2 3 0 0 0 0 0 18 0 1890.8443 Q9NTJ3;Q6NSG3;Q58F29;Q6P169;C9JR83;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 39 56 SMC4 Structural maintenance of chromosomes protein 4 no no 2 1.2526E-50 166.62 3 2 1.5124 1.4911 34.016 4 Median 0.98159 1.1106 4.6895 2 0 Median 2.3235 1.9951 4.2079 2 0 Median 219530000 103130000 116400000 154980000 82881000 72096000 64551000 20252000 44299000 12910 2070;1136 13268 34084;34085;34086;34087;34088 53167;53168;53169;53170;53171;53172;53173 53168 7 TESSSAQQVAVSR QLNSTKKPPKKANEKTESSSAQQVAVSRLS EKTESSSAQQVAVSRLSASSSSSDSSSSSS K T E S R L 2 1 0 0 0 2 1 0 0 0 0 0 0 0 0 4 1 0 0 2 0 0 13 0 1348.6583 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A0G2JHN8;A0A140T9I1 A0A024RCR5 761 773 BRD2 Bromodomain-containing protein 2 yes no 2 0.0081803 55.452 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12911 367 13269 34089 53174 53174 1 TETNVYFK VAGPLGVTHFLILSKTETNVYFKLMRLPGG HFLILSKTETNVYFKLMRLPGGPTLTFQVK K T E F K L 0 0 1 0 0 0 1 0 0 0 0 1 0 1 0 0 2 0 1 1 0 0 8 0 1000.4866 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 91 98 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.0049843 91.9 2 2 1.1099 1.0776 4.9498 4 Median 0.90709 1.0422 7.6356 2 0 Median 1.3327 1.0776 2.0027 2 0 Median 412080000 209290000 202790000 359230000 186010000 173220000 52854000 23282000 29573000 12912 493 13270 34090;34091;34092;34093 53175;53176;53177;53178;53179;53180;53181;53182 53180 8 TETSETEITTTEIIK DDMAAKAPPGGGTTRTETSETEITTTEIIK TETSETEITTTEIIKRRDVGPYGIRSEYCI R T E I K R 0 0 0 0 0 0 4 0 0 3 0 1 0 0 0 1 6 0 0 0 0 0 15 0 1694.8462 E7ETD6;Q12830;F5GXF5 E7ETD6 1796 1810 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 5.0258E-23 137.16 1 1 1.5055 1.2253 NaN 1 Median NaN NaN NaN 0 0 Median 1.5055 1.2253 NaN 1 0 Median 18549000 2634700 15915000 11351000 0 11351000 7198400 2634700 4563700 12913 1224 13271 34094;34095 53183;53184;53185 53183 3 TETVTSFR HDVGAYMLMYKGANRTETVTSFRKRESKVP MYKGANRTETVTSFRKRESKVPADLLKRAF R T E F R K 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 3 0 0 1 0 0 8 0 939.46616 P78527 P78527 3865 3872 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0012436 110.81 2 0.72305 0.78064 1.4843 2 Median 0.72305 0.78064 1.4843 2 0 Median NaN NaN NaN 0 0 Median 82469000 47807000 34662000 82469000 47807000 34662000 0 0 0 12914 1665 13272 34096;34097 53186;53187;53188;53189 53187 4 TETVVDDWDEEFDR SAVSQDAIEDSRQARTETVVDDWDEEFDRG RTETVVDDWDEEFDRGKEKKIKKFKREKRR R T E D R G 0 1 0 4 0 0 3 0 0 0 0 0 0 1 0 0 2 1 0 2 0 0 14 0 1754.7271 A0A024R8V6;Q9P275;B3KMW2;K7EIH0;K7EKN3;K7EKL7 A0A024R8V6 1065 1078 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.055163 24.229 1 1.4132 1.2245 NaN 1 Median NaN NaN NaN 0 0 Median 1.4132 1.2245 NaN 1 0 Median 2530200 1386900 1143300 0 0 0 2530200 1386900 1143300 12915 260 13273 34098 53190 53190 1 TETYPQGQPVK DDDFTFGQSALKKIKTETYPQGQPVKFPAN KKIKTETYPQGQPVKFPANANSTKEEVEMN K T E V K F 0 0 0 0 0 2 1 1 0 0 0 1 0 0 2 0 2 0 1 1 0 0 11 0 1246.6194 B3KPM8;Q8N5C6 B3KPM8 186 196 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.0011873 69.423 1 1 1.2798 1.1889 48.766 2 Median 0.82092 0.84211 NaN 1 0 Median 1.9951 1.6784 NaN 1 0 Median 6425800 2603000 3822800 4282600 1896300 2386300 2143200 706650 1436500 12916 921 13274 34099;34100 53191;53192 53191 2 TEVETFVSLVR LLHNNRKLLEKHITKTEVETFVSLVRKNRE HITKTEVETFVSLVRKNREPRFLDYLSDLC K T E V R K 0 1 0 0 0 0 2 0 0 0 1 0 0 1 0 1 2 0 0 3 0 0 11 0 1278.682 Q59ES2;Q14573;A6H8K3 Q59ES2 283 293 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes no 2 0.00043973 76.465 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12917 1735 13275 34101 53193 53193 1 TEVIPPLIENR LLSGGNTLHLVSTTKTEVIPPLIENRQSWS STTKTEVIPPLIENRQSWSVCKQVFPGLNY K T E N R Q 0 1 1 0 0 0 2 0 0 2 1 0 0 0 2 0 1 0 0 1 0 0 11 0 1279.7136 E1A689;C0JYY2;P04114;A8K479 E1A689 950 960 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes no 2 0.01936 53.327 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22060000 22060000 0 22060000 22060000 0 0 0 0 12918 1123 13276 34102 53194 53194 1 TEVIQLEDTLAQVR EHMESDELGLQKKLRTEVIQLEDTLAQVRK RTEVIQLEDTLAQVRKEYEMQRIEFEQNLA R T E V R K 1 1 0 1 0 2 2 0 0 1 2 0 0 0 0 0 2 0 0 2 0 0 14 0 1613.8625 B4DMM1;A0A0S2Z4Z2;H3BP71;A8K6K1;A0A0S2Z537;A0A024QZG0;O75150;A0PJJ6;Q05DC0;Q5VTR2 B4DMM1 135 148 RNF40;RNF20 E3 ubiquitin-protein ligase BRE1B;E3 ubiquitin-protein ligase BRE1A yes no 2 0.00019732 69.721 1 1.1254 1.1376 NaN 1 Median 1.1254 1.1376 NaN 1 0 Median NaN NaN NaN 0 0 Median 9791600 3807100 5984600 9791600 3807100 5984600 0 0 0 12919 21 13277 34103 53195 53195 1 TEVNGFDPLFNAITGLNGSGK IKSIILEGFKSYAQRTEVNGFDPLFNAITG DPLFNAITGLNGSGKSNILDSICFLLGISN R T E G K S 1 0 3 1 0 0 1 4 0 1 2 1 0 2 1 1 2 0 0 1 0 0 21 0 2150.0644 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 18 38 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 5.2174E-11 98.439 2 0.85814 0.96193 1.8085 2 Median 0.85814 0.96193 1.8085 2 0 Median NaN NaN NaN 0 0 Median 145190000 78578000 66615000 145190000 78578000 66615000 0 0 0 12920 69 13278 34104;34105 53196;53197;53198;53199 53199 4 TEVSLTLTNK SSGNLNDPNKEALAKTEVSLTLTNKFDVPG EALAKTEVSLTLTNKFDVPGDENAEMDART K T E N K F 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 1 3 0 0 1 0 0 10 0 1104.6027 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0 A4QPB0 1359 1368 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0024035 80.688 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5831100 5831100 0 5831100 5831100 0 0 0 0 12921 352 13279 34106;34107 53200;53201 53200 2 TEVWGLVLLSEEK DLDTQHCFKTMVGHRTEVWGLVLLSEEKRL HRTEVWGLVLLSEEKRLITGASDSELRVWD R T E E K R 0 0 0 0 0 0 3 1 0 0 3 1 0 0 0 1 1 1 0 2 0 0 13 0 1501.8028 Q5TDG3;Q9UNX4 Q5TDG3 192 204 WDR3 WD repeat-containing protein 3 yes no 2 9.3148E-07 111.52 2 2 1.0192 0.93466 12.349 4 Median 0.82705 0.85207 6.855 2 0 Median 1.2888 1.029 7.3751 2 0 Median 57689000 29607000 28082000 32168000 17837000 14331000 25521000 11770000 13751000 12922 1827 13280 34108;34109;34110;34111 53202;53203;53204;53205;53206;53207;53208;53209 53206 8 TEWETAAPAVAETPDIK ______________________________ WETAAPAVAETPDIKLFGKWSTDDVQINDI M T E I K L 4 0 0 1 0 0 3 0 0 1 0 1 0 0 2 0 3 1 0 1 0 0 17 0 1827.8891 M0R0F0;Q53G25;A0A024R4Q8;P46782;M0R0R2;M0QZN2 M0R0F0 2 18 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.00023071 64.65 1 1 1.4735 1.3073 28.854 2 Median 1.6061 1.6032 NaN 1 0 Median 1.3519 1.0661 NaN 1 0 Median 19895000 8641700 11253000 14390000 6323400 8066500 5505000 2318300 3186800 12923 160 13281 34112;34113 53210;53211;53212;53213;53214 53213 5 TEYDAVAEK KKKQKLLEENVSAFKTEYDAVAEKAGKVEA NVSAFKTEYDAVAEKAGKVEAEVKRLHNTI K T E E K A 2 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 9 0 1024.4713 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 868 876 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0013427 86.67 2 1 1.764 1.3979 NaN 1 Median NaN NaN NaN 0 0 Median 1.764 1.3979 NaN 1 0 Median 95165000 83342000 11823000 76502000 76502000 0 18663000 6840200 11823000 12924 2070 13282 34114;34115;34116 53215;53216;53217;53218 53215 4 TEYEEAQDAIVK NSKLTSLNEEYTKNKTEYEEAQDAIVKEIV KNKTEYEEAQDAIVKEIVNISSGYVEPMQT K T E V K E 2 0 0 1 0 1 3 0 0 1 0 1 0 0 0 0 1 0 1 1 0 0 12 0 1394.6565 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;B4DL39;B4DSB9;B4DN49 V9H019 568 579 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.00041352 71.349 2 0.48667 0.52365 NaN 1 Median 0.48667 0.52365 NaN 1 0 Median NaN NaN NaN 0 0 Median 38890000 20313000 18577000 38890000 20313000 18577000 0 0 0 12925 1237 13283 34117;34118 53219;53220 53219 2 TEYISTEFNR KRSQQHAKVVPWMRKTEYISTEFNRYGISN PWMRKTEYISTEFNRYGISNEKPEVKIGVS K T E N R Y 0 1 1 0 0 0 2 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 10 0 1258.583 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 134 143 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.00031057 80.239 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12073000 0 12073000 11050000 0 11050000 1022500 0 1022500 12926 46 13284 34119;34120;34121 53221;53222;53223 53221 3 TEYLSNADER HLQQANIQFRTDIARTEYLSNADERLRWQA TDIARTEYLSNADERLRWQASSLPADDLCT R T E E R L 1 1 1 1 0 0 2 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1196.5309 Q14204;H0YJ21 Q14204 3550 3559 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0034875 64.297 1 1.6997 1.7807 NaN 1 Median 1.6997 1.7807 NaN 1 0 Median NaN NaN NaN 0 0 Median 12492000 4434800 8057600 12492000 4434800 8057600 0 0 0 12927 1729 13285 34122 53224 53224 1 TFAAQSLVQLLSK LQHICAKVVDKSEYRTFAAQSLVQLLSKLP YRTFAAQSLVQLLSKLPCGEYAMFIAWLYK R T F S K L 2 0 0 0 0 2 0 0 0 0 3 1 0 1 0 2 1 0 0 1 0 0 13 0 1404.7977 P42695;G3V1A9;E9PKK4 P42695 372 384 NCAPD3 Condensin-2 complex subunit D3 yes no 2 2.3253E-13 128.01 2 1 0.87207 0.89693 6.1574 2 Median 0.87207 0.89693 6.1574 2 0 Median NaN NaN NaN 0 0 Median 54095000 21985000 32110000 42570000 21985000 20585000 11525000 0 11525000 12928 1565 13286 34123;34124;34125 53225;53226;53227;53228 53225 4 TFADCIQALLEQHQVLEVGGNTAR RRFSALEKAGGGRTRTFADCIQALLEQHQV LEQHQVLEVGGNTARLVAMGSAWPWLLHSV R T F A R L 3 1 1 1 1 3 2 2 1 1 3 0 0 1 0 0 2 0 0 2 0 0 24 0 2669.3231 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1779 1802 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 0.00022835 56.29 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12929 1699 13287 34126 53229 53229 1 TFAGNTPLHLAAGLGYPTLTR VTHLVTKLRANVNARTFAGNTPLHLAAGLG PLHLAAGLGYPTLTRLLLKAGADIHAENEE R T F T R L 3 1 1 0 0 0 0 3 1 0 4 0 0 1 2 0 4 0 1 0 0 0 21 0 2170.1535 Q00653;A0A1P8C958 Q00653 665 685 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 3 2.9936E-07 54.117 2 2.3533 2.3632 NaN 1 Median 2.3533 2.3632 NaN 1 0 Median NaN NaN NaN 0 0 Median 12769000 2839600 9929600 12769000 2839600 9929600 0 0 0 12930 1674 13288 34127;34128 53230;53231 53231 2 TFANSSYLAQHIR SHTETKPHKCPHCSKTFANSSYLAQHIRIH SKTFANSSYLAQHIRIHSGAKPYSCNFCEK K T F I R I 2 1 1 0 0 1 0 0 1 1 1 0 0 1 0 2 1 0 1 0 0 0 13 0 1506.7579 D3DUR9;Q8TF68;B4DQU6;F5H8L7;E9PHB3 D3DUR9 264 276 ZNF384 Zinc finger protein 384 yes no 2;3 0.00021781 70.089 2 3 1.9359 1.6739 2.7559 2 Median NaN NaN NaN 0 0 Median 1.9359 1.6739 2.7559 2 0 Median 22506000 17550000 4956600 15768000 15768000 0 6738500 1781900 4956600 12931 1195 13289 34129;34130;34131;34132;34133 53232;53233;53234;53235;53236;53237 53233 6 TFAPEEISAMVLTK TKPYIQVDIGGGQTKTFAPEEISAMVLTKM KTFAPEEISAMVLTKMKETAEAYLGKKVTH K T F T K M 2 0 0 0 0 0 2 0 0 1 1 1 1 1 1 1 2 0 0 1 0 0 14 0 1535.7905 V9HWB4;P11021;B4DEF7 V9HWB4 139 152 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.00058061 55.452 3 0.896 0.90797 NaN 1 Median 0.896 0.90797 NaN 1 0 Median NaN NaN NaN 0 0 Median 5822200 2549400 3272700 5822200 2549400 3272700 0 0 0 12932 1466 13290 34134;34135;34136 53238;53239;53240 53238 1179 3 TFCQLILDPIFK FSKSATSPEGKKLPRTFCQLILDPIFKVFD LPRTFCQLILDPIFKVFDAIMNFKKEETAK R T F F K V 0 0 0 1 1 1 0 0 0 2 2 1 0 2 1 0 1 0 0 0 0 0 12 0 1493.7952 P13639;Q6PK56;B4DRE8;B4DMC6 P13639 288 299 EEF2 Elongation factor 2 yes no 2 9.7487E-20 131.09 2 3.3734 3.572 NaN 1 Median 3.3734 3.572 NaN 1 0 Median NaN NaN NaN 0 0 Median 61537000 7755100 53782000 61537000 7755100 53782000 0 0 0 12933 1478 13291 34137;34138 53241;53242;53243;53244;53245;53246 53245 6 TFDETVSTYVPLAQQVEDFHK CTIVKPFNLSQGKKRTFDETVSTYVPLAQQ STYVPLAQQVEDFHKRTPNRYHLRSKKDDI R T F H K R 1 0 0 2 0 2 2 0 1 0 1 1 0 2 1 1 3 0 1 3 0 0 21 0 2453.1751 Q643R0;Q9ULW0;B3KM90 Q643R0 316 336 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 3.3865E-08 66.874 2 2 0.96618 0.91773 20.077 4 Median 0.70479 0.77374 0.048224 2 0 Median 1.3127 1.0954 0.93455 2 0 Median 188860000 95705000 93156000 95081000 56724000 38357000 93780000 38981000 54799000 12934 1837 13292 34139;34140;34141;34142 53247;53248;53249;53250;53251;53252;53253 53247 7 TFDPYIIIR LDLIEGSMTVCTTKKTFDPYIIIRARDLIK VCTTKKTFDPYIIIRARDLIKLLARSVSFE K T F I R A 0 1 0 1 0 0 0 0 0 3 0 0 0 1 1 0 1 0 1 0 0 0 9 0 1136.623 Q13601;B4DMS5 Q13601 107 115 KRR1 KRR1 small subunit processome component homolog yes no 2 0.0013192 86.953 2 2 1.1479 1.2398 9.1981 3 Plateau 1.1344 1.2364 0.38506 2 0 Median 1.265 1.0544 NaN 1 0 Median 105490000 53108000 52381000 89373000 43029000 46345000 16116000 10079000 6036800 12935 1717 13293 34143;34144;34145;34146 53254;53255;53256;53257;53258;53259;53260;53261;53262;53263;53264 53259 11 TFEEILPEIIISK IAIEGPDLVNGSHQKTFEEILPEIIISKEL QKTFEEILPEIIISKELSLLSGEVCNRTEG K T F S K E 0 0 0 0 0 0 3 0 0 4 1 1 0 1 1 1 1 0 0 0 0 0 13 0 1530.8545 A0PJ70;A8K9K0;Q8TF76 A0PJ70 528 540 GSG2 Serine/threonine-protein kinase haspin yes no 2 0.0042749 76.143 2 0.53049 0.57016 NaN 1 Median 0.53049 0.57016 NaN 1 0 Median NaN NaN NaN 0 0 Median 5985700 4209200 1776500 5985700 4209200 1776500 0 0 0 12936 646 13294 34147;34148 53265;53266 53265 1 TFEEYLDEYYR AAVGQEKPVFEPGDKTFEEYLDEYYRLDYE PGDKTFEEYLDEYYRLDYEDIIDDLPCRFK K T F Y R L 0 1 0 1 0 0 3 0 0 0 1 0 0 1 0 0 1 0 3 0 0 0 11 0 1526.6565 Q8N9T8;A0A024R7C4;B4DUT2;H0YH26 Q8N9T8 499 509 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.0014602 76.943 2 1 0.80396 0.81007 12.998 3 Median 0.79631 0.80442 0.98862 2 0 Median 1.1624 1.0072 NaN 1 0 Median 20305000 11823000 8481700 18294000 10654000 7639700 2011500 1169500 841990 12937 1916 13295 34149;34150;34151 53267;53268;53269 53267 2 TFEGHDASVLK GTIKLWALQDFSCLKTFEGHDASVLKVAFV SCLKTFEGHDASVLKVAFVSRGTQLLSSGS K T F L K V 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1202.5932 Q12788;J3KNP2;A0JLS5 Q12788 558 568 TBL3 Transducin beta-like protein 3 yes no 2 2.6881E-10 133.75 2 2 1.1281 1.0583 1.1899 4 Median 0.95461 1.052 1.3771 2 0 Median 1.3415 1.0629 1.1381 2 0 Median 125550000 60834000 64718000 98602000 48622000 49980000 26950000 12212000 14738000 12938 1698 13296 34152;34153;34154;34155 53270;53271;53272;53273;53274;53275;53276;53277;53278;53279 53277 10 TFEVPEENTAETITR LGAPNCLSMGSRCLKTFEVPEENTAETITR TFEVPEENTAETITRVLYEVFIEWGISAKV K T F T R V 1 1 1 0 0 0 4 0 0 1 0 0 0 1 1 0 4 0 0 1 0 0 15 0 1735.8265 A0A024RBU4;O96006;C9JXP4 A0A024RBU4 235 249 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 2 1.9593E-06 92.866 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8052800 8052800 0 8052800 8052800 0 0 0 0 12939 347 13297 34156 53280 53280 1 TFFEELAVEDK DKVVKKGKKDKKIKKTFFEELAVEDKQAGE KIKKTFFEELAVEDKQAGEEEKVLKEKEQQ K T F D K Q 1 0 0 1 0 0 3 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 11 0 1326.6343 Q8NE71;Q2L6I2;B4DNU2;Q5STZ8;A0PJ72;A0A0G2JIC2 Q8NE71 40 50 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.024489 72.006 2 0.72533 0.75153 1.5996 2 Median 0.72533 0.75153 1.5996 2 0 Median NaN NaN NaN 0 0 Median 29371000 16199000 13172000 29371000 16199000 13172000 0 0 0 12940 1926 13298 34157;34158 53281;53282 53282 0 TFFSFPAVVAPFK VFEHTFHVREGDEQRTFFSFPAVVAPFKCS QRTFFSFPAVVAPFKCSVLPLSQNQEFMPF R T F F K C 2 0 0 0 0 0 0 0 0 0 0 1 0 4 2 1 1 0 0 2 0 0 13 0 1456.7755 A0A090N8G0;P41250 A0A090N8G0 549 561 GARS Glycine--tRNA ligase yes no 2 0.00012464 83 2 3.2089 3.3146 NaN 1 Median 3.2089 3.3146 NaN 1 0 Median NaN NaN NaN 0 0 Median 18329000 3412600 14916000 18329000 3412600 14916000 0 0 0 12941 457 13299 34159;34160 53283;53284;53285;53286 53286 4 TFGTAIVINPEK GGQQALLQHWSEYIKTFGTAIVINPEKDKD YIKTFGTAIVINPEKDKDMVQDLLDFKDKV K T F E K D 1 0 1 0 0 0 1 1 0 2 0 1 0 1 1 0 2 0 0 1 0 0 12 0 1288.7027 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 346 357 CUL4A Cullin-4A yes no 2 2.3499E-08 120.06 2 2 0.86416 0.84308 7.0713 4 Linear 0.77988 0.82646 6.9121 2 0 Median 0.93131 0.74914 2.3997 2 0 Median 88475000 47269000 41206000 75420000 40606000 34814000 13055000 6663000 6391800 12942 1718 13300 34161;34162;34163;34164 53287;53288;53289;53290;53291;53292;53293;53294;53295 53288 9 TFLHTVQR PSSPCPASKVVRPLRTFLHTVQRNQMLMTP KVVRPLRTFLHTVQRNQMLMTPTSAPRSVM R T F Q R N 0 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 2 0 0 1 0 0 8 0 1000.5454 Q9NQS7;B3KPD3 Q9NQS7 494 501 INCENP Inner centromere protein yes no 2;3 5.0681E-30 198.25 4 4 1.4607 1.4535 20.016 8 Median 1.0267 1.1809 4.3005 4 0 Median 2.0129 1.7209 1.446 4 0 Median 809810000 374330000 435470000 717730000 342770000 374960000 92073000 31563000 60510000 12943 2059 13301 34165;34166;34167;34168;34169;34170;34171;34172 53296;53297;53298;53299;53300;53301;53302;53303;53304;53305;53306;53307;53308;53309 53299 14 TFLVGER VRRILGLLDAYLKTRTFLVGERVTLADITV LDAYLKTRTFLVGERVTLADITVVCTLLWL R T F E R V 0 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 820.4443 Q53YD7;P26641;B4DUP0 Q53YD7 150 156 EEF1G Elongation factor 1-gamma yes no 2 0.026953 83.614 2 2.155 2.4207 24.591 2 Median 2.155 2.4207 24.591 2 0 Median NaN NaN NaN 0 0 Median 116980000 37554000 79424000 116980000 37554000 79424000 0 0 0 12944 1522 13302 34173;34174 53310;53311;53312 53311 3 TFMEITLEEDSIER SKVREVAATVHRKLKTFMEITLEEDSIERF KTFMEITLEEDSIERFLYESSSRTLGELLN K T F E R F 0 1 0 1 0 0 4 0 0 2 1 0 1 1 0 1 2 0 0 0 0 0 14 0 1711.7975 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 1114 1127 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.0012062 61.235 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12945 1887 13303 34175 53313 53313 1735 1 TFNEPESVIAR SALVWEVRYIEHNARTFNEPESVIARSAKK HNARTFNEPESVIARSAKKITDQLLKFIKN R T F A R S 1 1 1 0 0 0 2 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 11 0 1261.6303 Q9NSI6;Q5R2U7;H7C409 Q9NSI6 1238 1248 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.032358 37.696 1 1.6231 1.4096 NaN 1 Median NaN NaN NaN 0 0 Median 1.6231 1.4096 NaN 1 0 Median 2650900 895110 1755700 0 0 0 2650900 895110 1755700 12946 2068 13304 34176 53314 53314 1 TFNEPGSPIVK SSLMWEVRYIEHNTRTFNEPGSPIVKSAKF HNTRTFNEPGSPIVKSAKFVTDLLLHFIKD R T F V K S 0 0 1 0 0 0 1 1 0 1 0 1 0 1 2 1 1 0 0 1 0 0 11 0 1187.6186 Q8WWQ0;Q9NWP3 Q8WWQ0 1237 1247 PHIP PH-interacting protein yes no 2 8.4085E-06 109.44 2 2 1.0749 1.0201 15.368 4 Median 0.78457 0.88303 4.435 2 0 Median 1.4433 1.1479 0.71909 2 0 Median 226720000 125640000 101080000 194590000 112160000 82428000 32125000 13472000 18653000 12947 1942 13305 34177;34178;34179;34180 53315;53316;53317;53318;53319;53320;53321 53316 6 TFNLPLLMLGGGGYTIR NLTVKGHAKCVEVVKTFNLPLLMLGGGGYT NLPLLMLGGGGYTIRNVARCWTYETAVALD K T F I R N 0 1 1 0 0 0 0 4 0 1 4 0 1 1 1 0 2 0 1 0 0 0 17 0 1821.9811 Q92769;B3KUJ5;Q59GB9 Q92769 291 307 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 2 2.063E-10 104.55 3 1.1312 1.1537 NaN 1 Median 1.1312 1.1537 NaN 1 0 Median NaN NaN NaN 0 0 Median 63205000 29314000 33890000 63205000 29314000 33890000 0 0 0 12948 1952 13306 34181;34182;34183 53322;53323;53324;53325 53324 1801 4 TFNPGAGLPTDK KRGAQLAKDIARRSKTFNPGAGLPTDKKKG RSKTFNPGAGLPTDKKKGGPSPGDVEAIKN K T F D K K 1 0 1 1 0 0 0 2 0 0 1 1 0 1 2 0 2 0 0 0 0 0 12 0 1216.6088 Q53G61;Q53G21;P09661;H0YMA0;H0YLR3 Q53G61 180 191 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.00029759 73.067 2 1.0291 1.0358 0.0024495 2 Median 1.0291 1.0358 0.0024495 2 0 Median NaN NaN NaN 0 0 Median 28395000 14076000 14319000 28395000 14076000 14319000 0 0 0 12949 1461 13307 34184;34185 53326;53327;53328 53328 3 TFNTSTGGLLLPSDTK KLYRETNEPVKTKTRTFNTSTGGLLLPSDT FNTSTGGLLLPSDTKRSQIYGSRQIILEKE R T F T K R 0 0 1 1 0 0 0 2 0 0 3 1 0 1 1 2 4 0 0 0 0 0 16 0 1650.8465 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 302 317 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 1.8015E-44 165.51 4 2 0.38313 0.3994 30.793 5 Median 0.39513 0.44763 7.6841 3 0 Median 0.2956 0.25062 2.8063 2 0 Median 624400000 456770000 167630000 504060000 362970000 141090000 120340000 93802000 26537000 12950 82 13308 34186;34187;34188;34189;34190;34191 53329;53330;53331;53332;53333;53334;53335;53336;53337;53338;53339;53340;53341;53342;53343;53344;53345;53346;53347;53348;53349 53331 21 TFPSAEDVVAR VQNGSQLFIKELRSRTFPSAEDVVARVPGS LRSRTFPSAEDVVARVPGSQLTLGYMEEHG R T F A R V 2 1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 2 0 0 11 0 1190.5932 O75151 O75151 97 107 PHF2 Lysine-specific demethylase PHF2 yes yes 2 0.001998 63.216 1 1.4484 1.4759 NaN 1 Median 1.4484 1.4759 NaN 1 0 Median NaN NaN NaN 0 0 Median 20604000 7840900 12763000 20604000 7840900 12763000 0 0 0 12951 1400 13309 34192 53350 53350 1 TFPVDILFSK AAFFGNVPIFHIPGRTFPVDILFSKTPQED HIPGRTFPVDILFSKTPQEDYVEAAVKQSL R T F S K T 0 0 0 1 0 0 0 0 0 1 1 1 0 2 1 1 1 0 0 1 0 0 10 0 1165.6383 A8K6G9;Q92620;B4DM30;B4DET0;J3KTG2 A8K6G9 708 717 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.021656 46.158 2 1.2711 1.3177 12.254 2 Median 1.2711 1.3177 12.254 2 0 Median NaN NaN NaN 0 0 Median 10853000 4909300 5943400 10853000 4909300 5943400 0 0 0 12952 760 13310 34193;34194 53351;53352;53353;53354 53351 4 TFQCELCSYTCPR KPPKPTKIKKKGVKKTFQCELCSYTCPRRS KKTFQCELCSYTCPRRSNLDRHMKSHTDER K T F P R R 0 1 0 0 3 1 1 0 0 0 1 0 0 1 1 1 2 0 1 0 0 0 13 0 1720.7007 P49711 P49711 265 277 CTCF Transcriptional repressor CTCF yes yes 2 0.042525 30.872 1 1.037 0.91283 NaN 1 Median NaN NaN NaN 0 0 Median 1.037 0.91283 NaN 1 0 Median 1873300 962040 911250 0 0 0 1873300 962040 911250 12953 1585 13311 34195 53355;53356 53356 2 TFSFAIPLIEK SGKDLIAQARTGTGKTFSFAIPLIEKLHGE GTGKTFSFAIPLIEKLHGELQDRKRGRAPQ K T F E K L 1 0 0 0 0 0 1 0 0 2 1 1 0 2 1 1 1 0 0 0 0 0 11 0 1264.7067 Q9NR30 Q9NR30 237 247 DDX21 Nucleolar RNA helicase 2 yes yes 2 7.4055E-06 109.83 3 2 1.1076 1.1156 17.103 4 Median 1.1076 1.2486 1.6455 2 0 Median 1.1006 0.94336 9.4188 2 0 Median 440220000 207000000 233220000 251700000 118990000 132700000 188520000 88009000 100510000 12954 2065 13312 34196;34197;34198;34199;34200 53357;53358;53359;53360;53361;53362;53363;53364;53365;53366;53367;53368 53366 12 TFSFAIPLIER EGKDLIAQARTGTGKTFSFAIPLIERLQRN GTGKTFSFAIPLIERLQRNQETIKKSRSPK K T F E R L 1 1 0 0 0 0 1 0 0 2 1 0 0 2 1 1 1 0 0 0 0 0 11 0 1292.7129 B4DW97;A0A087WVC1;Q9BQ39;B4DED6;K0J110;Q53FI9 B4DW97 188 198 DDX50;mcdrh ATP-dependent RNA helicase DDX50 yes no 2 0.00044841 77.677 2 1.3937 1.4051 5.5802 2 Median 1.3937 1.4051 5.5802 2 0 Median NaN NaN NaN 0 0 Median 13931000 6955600 6975700 13931000 6955600 6975700 0 0 0 12955 416 13313 34201;34202 53369;53370;53371;53372;53373;53374 53373 6 TFSLTEVR KKESGENPPPKLRRRTFSLTEVRGQVSESE PPKLRRRTFSLTEVRGQVSESEDSITKQIE R T F V R G 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 8 0 951.50255 Q59HG1;O95239;B3KNC0 Q59HG1 802 809 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.0070613 84.568 2 1 0.90634 1.0112 14.968 3 Median 0.89101 1.0005 1.5046 2 0 Median 1.5766 1.2957 NaN 1 0 Median 116190000 60698000 55495000 107570000 57105000 50462000 8625300 3592400 5032900 12956 1803 13314 34203;34204;34205 53375;53376;53377;53378;53379 53375 5 TFTDCFNCLPIAAIVDEK FYDECKRRYNIKLWKTFTDCFNCLPIAAIV DCFNCLPIAAIVDEKIFCCHGGLSPDLQSM K T F E K I 2 0 1 2 2 0 1 0 0 2 1 1 0 2 1 0 2 0 0 1 0 0 18 0 2112.986 P62136;A0A140VJS9;B3KXM2;H0Y3Y6;C4TNW5;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;B4E163 P62136 151 168 PPP1CA;PPP1CB;PPP1CC;HEL-S-80p Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 1.6129E-77 193.06 3 2 2.3717 2.0714 21.498 3 Plateau 1.2657 1.4006 NaN 1 0 Median 2.3447 2.0291 2.9177 2 0 Median 408300000 120310000 287990000 100510000 28089000 72421000 307790000 92223000 215570000 12957 1632;343;1633 13315 34206;34207;34208;34209;34210 53380;53381;53382;53383;53384;53385;53386;53387;53388 53381 8 TFTMEGGPGGDPQLEGLIPR YPVCIFAYGQTGSGKTFTMEGGPGGDPQLE GGPGGDPQLEGLIPRALRHLFSVAQELSGQ K T F P R A 0 1 0 1 0 1 2 5 0 1 2 0 1 1 3 0 2 0 0 0 0 0 20 0 2071.0044 A0A024RCS7;Q9BW19;B4DMA8 A0A024RCS7 417 436 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.00014721 51.875 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8176600 0 8176600 8176600 0 8176600 0 0 0 12958 371 13316 34211;34212 53389;53390;53391 53391 276 3 TFVLEVMGR EVVDAIMTTAQSHQRTFVLEVMGRHCGYLA AQSHQRTFVLEVMGRHCGYLALVSALACGA R T F G R H 0 1 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 2 0 0 9 0 1050.5532 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;P17858;Q01813;Q5VSR5 Q01813 211 219 PFKM;PFKL;PFKP ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type;ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type no no 2 0.011814 48.283 1 4.8238 4.8353 NaN 1 Median 4.8238 4.8353 NaN 1 0 Median NaN NaN NaN 0 0 Median 18091000 2774600 15316000 18091000 2774600 15316000 0 0 0 12959 1677;61;1495 13317 34213 53392 53392 33 1 TFVSGACDASIK HSGDVMSLSLAPDGRTFVSGACDASIKLWD DGRTFVSGACDASIKLWDVRDSMCRQTFIG R T F I K L 2 0 0 1 1 0 0 1 0 1 0 1 0 1 0 2 1 0 0 1 0 0 12 0 1254.5914 C9JIS1;C9JXA5;Q6FHM2;P62879;E7EP32 C9JIS1 198 209 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes no 2 0.0064796 61.958 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12960 1135 13318 34214 53393 53393 1 TFYNELR ______________________________ ______________________________ R T F L R V 0 1 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 941.46068 Q562L9 Q562L9 6 12 ACT yes yes 2 0.02687 81.297 2 2.225 2.3506 6.356 2 Median 2.225 2.3506 6.356 2 0 Median NaN NaN NaN 0 0 Median 49294000 16110000 33183000 49294000 16110000 33183000 0 0 0 12961 1796 13319 34215;34216 53394;53395 53394 2 TGAAPIIDVVR TLVSEQTRVNAAKNKTGAAPIIDVVRS___ AKNKTGAAPIIDVVRS______________ K T G V R S 2 1 0 1 0 0 0 1 0 2 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1110.6397 Q9BQQ5;E9PLL6;Q6NZ52;P46776;E9PJD9;E9PLX7 Q9BQQ5 95 105 L27a;RPL27A 60S ribosomal protein L27a yes no 2 0.00032579 87.298 1 2 0.81445 0.88751 12.475 3 Plateau 0.75312 0.88788 NaN 1 0 Median 0.82065 0.71549 0.78091 2 0 Median 1763400000 983250000 780130000 1182200000 662520000 519640000 581210000 320720000 260490000 12962 1247 13320 34217;34218;34219 53396;53397;53398;53399;53400;53401;53402;53403;53404;53405 53397 10 TGAHLELSLAK GEGEQAKICLEIMQRTGAHLELSLAKDQGL IMQRTGAHLELSLAKDQGLSIMVSGKLDAV R T G A K D 2 0 0 0 0 0 1 1 1 0 3 1 0 0 0 1 1 0 0 0 0 0 11 0 1138.6346 A0A024R4E5;Q00341;B2R5V9;B4DKR8;C9J5E5;C9JIZ1;H7C0A4;C9JZI8;C9JHS7;C9JHZ8;C9JES8 A0A024R4E5 111 121 HDLBP Vigilin yes no 2 0.00061041 73.841 1 1.4248 1.4484 NaN 1 Median 1.4248 1.4484 NaN 1 0 Median NaN NaN NaN 0 0 Median 6405800 2560200 3845700 6405800 2560200 3845700 0 0 0 12963 154 13321 34220 53406 53406 1 TGAIVDVPVGEELLGR FGNDKLIKEGDIVKRTGAIVDVPVGEELLG GAIVDVPVGEELLGRVVDALGNAIDGKGPI R T G G R V 1 1 0 1 0 0 2 3 0 1 2 0 0 0 1 0 1 0 0 3 0 0 16 0 1623.8832 V9HW26;P25705;K7ERX7;B4DGW3;K7EK77;K7EQH4;K7EJP1 V9HW26 134 149 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.0038892 55.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2827800 0 2827800 2827800 0 2827800 0 0 0 12964 1518 13322 34221 53407 53407 1 TGDFQLHTNVNDGTEFGGSIYQK AKSKLTRNNFAVGYRTGDFQLHTNVNDGTE NVNDGTEFGGSIYQKVCEDLDTSVNLAWTS R T G Q K V 0 0 2 2 0 2 1 4 1 1 1 1 0 2 0 1 3 0 1 1 0 0 23 0 2527.1615 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;B4DKM5 A0A0A0MR02 186 208 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 3 4.9868E-30 126.86 4 2 2.2992 2.5865 6.3778 5 Median 2.1915 2.5731 7.2435 3 0 Median 3.1212 2.6515 0.51341 2 0 Median 916240000 293940000 622300000 792240000 263560000 528670000 124000000 30378000 93623000 12965 28 13323 34222;34223;34224;34225;34226;34227 53408;53409;53410;53411;53412;53413;53414;53415;53416;53417;53418;53419;53420;53421;53422;53423;53424;53425 53423 18 TGDPQETLRR RPSLSLGTITDEEMKTGDPQETLRRASMQP DEEMKTGDPQETLRRASMQPIQIAEGTGIT K T G R R A 0 2 0 1 0 1 1 1 0 0 1 0 0 0 1 0 2 0 0 0 0 0 10 1 1171.5945 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1944 1953 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 0.0005926 59.426 1 0.55247 0.54435 NaN 1 Median 0.55247 0.54435 NaN 1 0 Median NaN NaN NaN 0 0 Median 6565300 4120300 2445000 6565300 4120300 2445000 0 0 0 12966 186;1747 13324 34228 53426 53426 1 TGEDEDEEDNDALLK IKLAKELPPPSEEIKTGEDEDEEDNDALLK TGEDEDEEDNDALLKENESPDVRRDKPVTG K T G L K E 1 0 1 4 0 0 4 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 15 0 1691.701 A0A087WWS1;Q96FV9 A0A087WWS1 542 556 THOC1 THO complex subunit 1 yes no 2 4.0577E-25 140.14 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12967 428 13325 34229;34230 53427;53428 53427 2 TGEEINFGK KDIIHFFRHREQKEKTGEEINFGKLITKPS REQKEKTGEEINFGKLITKPSEGTTLRVED K T G G K L 0 0 1 0 0 0 2 2 0 1 0 1 0 1 0 0 1 0 0 0 0 0 9 0 993.47673 Q05D78;F8W7U8;A0A024R395;P49959 Q05D78 408 416 MRE11A Double-strand break repair protein MRE11A yes no 2 0.00068897 95.741 3 0.49136 0.48875 30.495 2 Median 0.49136 0.48875 30.495 2 0 Median NaN NaN NaN 0 0 Median 39390000 20508000 18882000 39390000 20508000 18882000 0 0 0 12968 131 13326 34231;34232;34233 53429;53430;53431;53432 53429 4 TGEELGFDYGDR LRFPRIAFFSSRDIRTGEELGFDYGDRFWD DIRTGEELGFDYGDRFWDIKSKYFTCQCGS R T G D R F 0 1 0 2 0 0 2 3 0 0 1 0 0 1 0 0 1 0 1 0 0 0 12 0 1357.5786 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 Q59FM7 967 978 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.00016719 91.855 2 0.6718 0.67758 6.8193 2 Median 0.6718 0.67758 6.8193 2 0 Median NaN NaN NaN 0 0 Median 31758000 20384000 11374000 31758000 20384000 11374000 0 0 0 12969 364 13327 34234;34235 53433;53434;53435 53433 3 TGEEVGFVVDAK SKCLATGPGIASTVKTGEEVGFVVDAKTAG TVKTGEEVGFVVDAKTAGKGKVTCTVLTPD K T G A K T 1 0 0 1 0 0 2 2 0 0 0 1 0 1 0 0 1 0 0 3 0 0 12 0 1249.619 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1630 1641 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.00068053 86.344 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10371000 10371000 0 10371000 10371000 0 0 0 0 12970 1402 13328 34236;34237 53436;53437 53437 2 TGENVEDAFLEAAK FAEENGLLFLEASAKTGENVEDAFLEAAKK KTGENVEDAFLEAAKKIYQNIQDGSLDLNA K T G A K K 3 0 1 1 0 0 3 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 14 0 1492.7046 A0A024R845;P61106;X6RFL8 A0A024R845 157 170 RAB14 Ras-related protein Rab-14 yes no 2 0.0002582 88.338 2 1 1.5979 1.3093 NaN 1 Median NaN NaN NaN 0 0 Median 1.5979 1.3093 NaN 1 0 Median 15670000 919840 14750000 13158000 0 13158000 2511500 919840 1591600 12971 242 13329 34238;34239;34240 53438;53439;53440 53439 3 TGESILSLLR HLTLLLLFALCRWHRTGESILSLLRDPSKR CRWHRTGESILSLLRDPSKRKVPPQPLTPN R T G L R D 0 1 0 0 0 0 1 1 0 1 3 0 0 0 0 2 1 0 0 0 0 0 10 0 1087.6237 H7C0X4;B4DS50;C9J7S5;Q92685 H7C0X4 216 225 ALG3 Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase yes no 2 0.00045959 72.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12972 1028 13330 34241 53441 53441 1 TGEYPVPLIR FAREEIIPVAAEYDKTGEYPVPLIRRAWEL AEYDKTGEYPVPLIRRAWELGLMNTHIPEN K T G I R R 0 1 0 0 0 0 1 1 0 1 1 0 0 0 2 0 1 0 1 1 0 0 10 0 1143.6288 B7Z9I1;B4DWX6;A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;E9PJM9 B7Z9I1 34 43 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.001837 83.783 2 1.8398 1.8977 NaN 1 Median 1.8398 1.8977 NaN 1 0 Median NaN NaN NaN 0 0 Median 38882000 10475000 28407000 38882000 10475000 28407000 0 0 0 12973 545 13331 34242;34243 53442;53443 53443 2 TGFFEFQAAK TDQNYEKMMFKEALKTGFFEFQAAKDKYRE KEALKTGFFEFQAAKDKYRELAVEGMHREL K T G A K D 2 0 0 0 0 1 1 1 0 0 0 1 0 3 0 0 1 0 0 0 0 0 10 0 1144.5553 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;Q9NVC0 B4E266 777 786 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.022046 46.001 1 1.0405 1.0836 NaN 1 Median 1.0405 1.0836 NaN 1 0 Median NaN NaN NaN 0 0 Median 24500000 10771000 13729000 24500000 10771000 13729000 0 0 0 12974 883 13332 34244 53444 53444 1 TGFINLDK CGSNPLKREIGDYIRTGFINLDKPSNPSSH EIGDYIRTGFINLDKPSNPSSHEVVAWIRR R T G D K P 0 0 1 1 0 0 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 8 0 906.48108 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 89 96 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.010808 71.379 2 0.76437 0.85669 NaN 1 Median 0.76437 0.85669 NaN 1 0 Median NaN NaN NaN 0 0 Median 111740000 43781000 67955000 111740000 43781000 67955000 0 0 0 12975 1398 13333 34245;34246 53445;53446;53447 53447 3 TGFINLDKPSNPSSHEVVAWIR CGSNPLKREIGDYIRTGFINLDKPSNPSSH KPSNPSSHEVVAWIRRILRVEKTGHSGTLD R T G I R R 1 1 2 1 0 0 1 1 1 2 1 1 0 1 2 3 1 1 0 2 0 0 22 1 2466.2656 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 89 110 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 3 0.039329 16.717 1 0.68002 0.57201 NaN 1 Median NaN NaN NaN 0 0 Median 0.68002 0.57201 NaN 1 0 Median 4431300 2816000 1615200 0 0 0 4431300 2816000 1615200 12976 1398 13334 34247 53448 53448 1 TGGAYGEDLGADYNLSQVCDGK PKAKYHGNVMLLRAKTGGAYGEDLGADYNL DLGADYNLSQVCDGKVSVHVIEGDHRTLLE K T G G K V 2 0 1 3 1 1 1 5 0 0 2 1 0 0 0 1 1 0 2 1 0 0 22 0 2288.9856 A0A0U1RQF0;P49327 A0A0U1RQF0 2448 2469 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 7.8219E-08 63.682 1 1.3163 1.3498 NaN 1 Median 1.3163 1.3498 NaN 1 0 Median NaN NaN NaN 0 0 Median 13023000 7546500 5476900 13023000 7546500 5476900 0 0 0 12977 587 13335 34248 53449;53450;53451 53449 3 TGGLEIDSDFGGFR IVAAVGLEPNVELAKTGGLEIDSDFGGFRV KTGGLEIDSDFGGFRVNAELQARSNIWVAG K T G F R V 0 1 0 2 0 0 1 4 0 1 1 0 0 2 0 1 1 0 0 0 0 0 14 0 1469.6787 O95831;A0A140VK04;E9PMA0 O95831 409 422 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 0.00010434 84.507 2 1.1109 0.9383 10.086 2 Median NaN NaN NaN 0 0 Median 1.1109 0.9383 10.086 2 0 Median 12117000 5593800 6522700 0 0 0 12117000 5593800 6522700 12978 1431 13336 34249;34250 53452;53453 53453 2 TGGPAYGPSSDVSTASETESEK RTYGGSYGGRGRGRRTGGPAYGPSSDVSTA PSSDVSTASETESEKREEPNRAGPGDRDPP R T G E K R 2 0 0 1 0 0 3 3 0 0 0 1 0 0 2 5 3 0 1 1 0 0 22 0 2155.9393 P51116 P51116 438 459 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 5.8715E-09 82.908 2 1.2209 1.2989 6.6862 2 Median 1.2209 1.2989 6.6862 2 0 Median NaN NaN NaN 0 0 Median 37876000 16406000 21470000 37876000 16406000 21470000 0 0 0 12979 1593 13337 34251;34252 53454;53455;53456;53457;53458;53459 53459 6 TGGPAYGPSSDVSTASETESEKR RTYGGSYGGRGRGRRTGGPAYGPSSDVSTA SSDVSTASETESEKREEPNRAGPGDRDPPT R T G K R E 2 1 0 1 0 0 3 3 0 0 0 1 0 0 2 5 3 0 1 1 0 0 23 1 2312.0404 P51116 P51116 438 460 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 0.00069103 45.135 1 1 1.0949 0.98223 NaN 1 Median NaN NaN NaN 0 0 Median 1.0949 0.98223 NaN 1 0 Median 2026200 982540 1043600 0 0 0 2026200 982540 1043600 12980 1593 13338 34253;34254 53460;53461 53460 2 TGHYLTVK ALVTGYFMQVAHLERTGHYLTVKDNQVVQL QVAHLERTGHYLTVKDNQVVQLHPSTVLDH R T G V K D 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 1 1 0 0 8 0 917.49707 O43143;B4E0S6 O43143 707 714 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2;3 0.00097324 121.67 3 1 1.1381 1.2164 17.943 4 Median 1.1677 1.3156 9.6623 3 0 Median 1.1092 0.91046 NaN 1 0 Median 231670000 107120000 124540000 222510000 102940000 119570000 9158600 4180500 4978100 12981 1379 13339 34255;34256;34257;34258 53462;53463;53464;53465;53466;53467 53463 6 TGIDLGTTGR ASSASSFLDSDELERTGIDLGTTGRLQLMA DELERTGIDLGTTGRLQLMARLAEGSGSVA R T G G R L 0 1 0 1 0 0 0 3 0 1 1 0 0 0 0 0 3 0 0 0 0 0 10 0 989.51417 A0A0U1RQH7;B7Z4L7;Q6N037;E1P5S2;G3XAC6;B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;Q7Z3L0;Q6MZY7;A0A0U1RQW2;H0Y4X3;A0A087X122 A0A0U1RQH7 194 203 DKFZp686A11192;RNPC2;RBM39;DKFZp781C0423;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 2 0.0069046 61.593 2 2 0.58093 0.48579 NaN 1 Median NaN NaN NaN 0 0 Median 0.58093 0.48579 NaN 1 0 Median 32638000 31208000 1429700 28868000 28868000 0 3769500 2339900 1429700 12982 588 13340 34259;34260;34261;34262 53468;53469;53470;53471 53469 4 TGIEQGSDAGYLCESQK KGLYPAPLKIIDVVKTGIEQGSDAGYLCES IEQGSDAGYLCESQKFGELVMTKESKALMG K T G Q K F 1 0 0 1 1 2 2 3 0 1 1 1 0 0 0 2 1 0 1 0 0 0 17 0 1841.8102 E9KL44;P40939;B4DRH6;B4DDZ5 E9KL44 310 326 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 1.0115E-12 119.01 2 1.2552 1.2507 1.6679 2 Median 1.2552 1.2507 1.6679 2 0 Median NaN NaN NaN 0 0 Median 38485000 14717000 23769000 38485000 14717000 23769000 0 0 0 12983 1228 13341 34263;34264 53472;53473;53474 53473 3 TGISDVFAK FVGNLNFNKSAPELKTGISDVFAKNDLAVV SAPELKTGISDVFAKNDLAVVDVRIGMTRK K T G A K N 1 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 9 0 936.49165 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 248 256 NCL Nucleolin yes no 2 0.0018198 80.438 2 2 1.1049 0.71368 63.316 4 Linear 1.0733 1.2417 3.1104 2 0 Median 0.51818 0.41493 1.488 2 0 Median 477050000 236280000 240760000 453930000 221450000 232480000 23117000 14837000 8280500 12984 151 13342 34265;34266;34267;34268 53475;53476;53477;53478;53479;53480;53481 53479 7 TGLAVTVGQAK EDSSSSEESDSEEEKTGLAVTVGQAKSVGK EEEKTGLAVTVGQAKSVGKGLQVKAASVPV K T G A K S 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 2 0 0 2 0 0 11 0 1043.5975 E7ETY2;B4DRA2;B4DLB1;Q13428;Q59FZ2 Q13428 706 716 TCOF1 Treacle protein no no 2 0.0004027 81.263 2 2 1.3466 1.2798 25.686 4 Median 0.90899 1.0262 5.0398 2 0 Median 1.9714 1.5925 4.7321 2 0 Median 226930000 115970000 110960000 209600000 110100000 99493000 17332000 5865000 11467000 12985 1712;1225 13343 34269;34270;34271;34272 53482;53483;53484;53485;53486;53487;53488;53489 53485 8 TGLFSATQTQEVENLVR ASINTILEFLPKQRRTGLFSATQTQEVENL LFSATQTQEVENLVRAGLRNPVRVSVKEKG R T G V R A 1 1 1 0 0 2 2 1 0 0 2 0 0 1 0 1 3 0 0 2 0 0 17 0 1891.964 B4DVE4;F5H5U2;A0A024RBS0;Q8NHQ9 B4DVE4 198 214 DDX55 ATP-dependent RNA helicase DDX55 yes no 2 7.8158E-05 63.181 2 1.3545 1.1403 8.1428 2 Median NaN NaN NaN 0 0 Median 1.3545 1.1403 8.1428 2 0 Median 16586000 6442200 10144000 0 0 0 16586000 6442200 10144000 12986 344 13344 34273;34274 53490;53491;53492;53493;53494 53494 5 TGLIDYNQLALTAR TSIFFESMPYKLNPKTGLIDYNQLALTARL KTGLIDYNQLALTARLFRPRLIIAGTSAYA K T G A R L 2 1 1 1 0 1 0 1 0 1 3 0 0 0 0 0 2 0 1 0 0 0 14 0 1547.8308 G3V5L0;G3V2Y4;B4DJ63;B4DLV4;B4DW25;B4DP88;B4E1G2;Q5BJF5;Q5HYG8;B4DJQ3;A0A024RB99;V9HW06;Q53ET4;B4DWA7;P34897 G3V5L0 180 193 SHMT2;DKFZp686P09201;HEL-S-51e Serine hydroxymethyltransferase;Serine hydroxymethyltransferase, mitochondrial yes no 2 0.00021323 87.363 2 2 0.7296 0.62426 63.447 3 Median 1.7506 1.7698 NaN 1 0 Median 0.70025 0.59202 7.5005 2 0 Median 15935000 7213500 8721600 9762300 3737000 6025300 6172900 3476500 2696400 12987 330 13345 34275;34276;34277;34278 53495;53496;53497;53498;53499 53497 5 TGLYNYYDDEK MVTRSYTVGVMMMHRTGLYNYYDDEKEKLQ MMHRTGLYNYYDDEKEKLQIVEMPLAHKLS R T G E K E 0 0 1 2 0 0 1 1 0 0 1 1 0 0 0 0 1 0 3 0 0 0 11 0 1379.5881 E9PKH2;B4DN87;A8K259;A0A024R5K8;P50454;Q9NPA9;E9PR70;E9PPV6 E9PKH2 23 33 SERPINH1;ra-a47 Serpin H1 yes no 2 0.024605 51.436 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12988 185 13346 34279;34280 53500;53501 53501 2 TGMILLAGEITSR QQDPDAKVACETVAKTGMILLAGEITSRAA AKTGMILLAGEITSRAAVDYQKVVREAVKH K T G S R A 1 1 0 0 0 0 1 2 0 2 2 0 1 0 0 1 2 0 0 0 0 0 13 0 1360.7384 A0A140VJP5;P31153;B4DEX8 A0A140VJP5 62 74 MAT2A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase yes no 2 7.6596E-05 86.463 1 3.4158 3.4241 NaN 1 Median 3.4158 3.4241 NaN 1 0 Median NaN NaN NaN 0 0 Median 18056000 4828600 13228000 18056000 4828600 13228000 0 0 0 12989 606 13347 34281 53502 53502 459 1 TGNFISTSTSLPR SDDESEEDEDDLLQRTGNFISTSTSLPRGI QRTGNFISTSTSLPRGILKMKNCQHANAER R T G P R G 0 1 1 0 0 0 0 1 0 1 1 0 0 1 1 3 3 0 0 0 0 0 13 0 1379.7045 B2RAX6;Q9Y5J1 B2RAX6 197 209 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 4.4227E-06 107.11 2 2 1.1308 1.1252 5.6437 4 Median 0.9245 1.0725 0.51654 2 0 Median 1.372 1.1821 0.71746 2 0 Median 467480000 244860000 222620000 398810000 216840000 181980000 68669000 28028000 40642000 12990 876 13348 34282;34283;34284;34285 53503;53504;53505;53506;53507;53508;53509;53510 53505 8 TGNFQVTELGR ALMLDKNNLVKYDKKTGNFQVTELGRIASH YDKKTGNFQVTELGRIASHYYITNDTVQTY K T G G R I 0 1 1 0 0 1 1 2 0 0 1 0 0 1 0 0 2 0 0 1 0 0 11 0 1220.6149 O75643;A4FU77;Q9H8B9 O75643 976 986 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00012222 96.171 2 1 0.77778 0.86346 17.772 3 Median 0.78635 0.8916 4.5353 2 0 Median 0.74522 0.65869 NaN 1 0 Median 140900000 76686000 64214000 137140000 74835000 62302000 3762600 1851200 1911400 12991 1411 13349 34286;34287;34288 53511;53512;53513;53514;53515;53516 53515 6 TGNILQDLQPFLVK TGFDRPNLYLEVRRKTGNILQDLQPFLVKT KTGNILQDLQPFLVKTSSHWEFEGPTIIYC K T G V K T 0 0 1 1 0 2 0 1 0 1 3 1 0 1 1 0 1 0 0 1 0 0 14 0 1584.8875 Q14191;Q59F09 Q14191 743 756 WRN Werner syndrome ATP-dependent helicase yes no 2 1.7671E-69 185.3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12992 1728 13350 34289 53517 53517 1 TGNIPALVR MALFPHLLQPVLWERTGNIPALVRLLQAFL PVLWERTGNIPALVRLLQAFLERGSNTIAS R T G V R L 1 1 1 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 9 0 939.55016 B4DUC5;P55060;B4DPS6;B4DM31;B4DS32 B4DUC5 481 489 CSE1L Exportin-2 yes no 2 0.0042156 69.825 1 2.4368 2.3954 NaN 1 Median 2.4368 2.3954 NaN 1 0 Median NaN NaN NaN 0 0 Median 13514000 3452100 10062000 13514000 3452100 10062000 0 0 0 12993 1037 13351 34290 53518 53518 1 TGPAAAQVQVGK KESPRKGAAPAPPRKTGPAAAQVQVGKQEE PRKTGPAAAQVQVGKQEEDSRSSSEESDSD K T G G K Q 3 0 0 0 0 2 0 2 0 0 0 1 0 0 1 0 1 0 0 2 0 0 12 0 1125.6142 E7ETY2;Q13428;Q59FZ2 Q13428 459 470 TCOF1 Treacle protein no no 2 2.1706E-29 169.41 2 0.83637 0.90045 0.50672 2 Median 0.83637 0.90045 0.50672 2 0 Median NaN NaN NaN 0 0 Median 90779000 47229000 43550000 90779000 47229000 43550000 0 0 0 12994 1712;1225 13352 34291;34292 53519;53520 53519 2 TGPLSAQPSVEK SELSEKPAESVTSKKTGPLSAQPSVEKENL SKKTGPLSAQPSVEKENLAIESQSKTQKKG K T G E K E 1 0 0 0 0 1 1 1 0 0 1 1 0 0 2 2 1 0 0 1 0 0 12 0 1212.635 Q71F23;Q09GN1;A5D8X7;D6R9S4 Q71F23 186 197 CENPU;MLF1IP Centromere protein U yes no 2 0.0089727 55.721 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5566700 0 5566700 5566700 0 5566700 0 0 0 12995 1866 13353 34293 53521 53521 1 TGQAAELGGLLK VKEQSILELGSLLAKTGQAAELGGLLKYVR LAKTGQAAELGGLLKYVRPFLNSISKAKAA K T G L K Y 2 0 0 0 0 1 1 3 0 0 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1156.6452 O00231;J3QRY4;B4DTS5 O00231 60 71 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 4.9915E-06 110.39 2 1.3949 1.5069 NaN 1 Median 1.3949 1.5069 NaN 1 0 Median NaN NaN NaN 0 0 Median 33979000 10960000 23019000 33979000 10960000 23019000 0 0 0 12996 1360 13354 34294;34295 53522;53523 53523 2 TGQALCSLQCYR SVPGCPHPRRYACSRTGQALCSLQCYRINL CSRTGQALCSLQCYRINLQMRLGGPEGPGS R T G Y R I 1 1 0 0 2 2 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 12 0 1455.6599 J3KQ70;B4DJ31;Q9C086;B4DJ22 J3KQ70 325 336 INO80B-WBP1;INO80B INO80 complex subunit B yes no 2 0.0041623 54.198 1 1 0.80818 0.75922 54.122 2 Median 0.50963 0.5178 NaN 1 0 Median 1.2816 1.1132 NaN 1 0 Median 9706800 6039000 3667800 7477400 5162400 2315100 2229300 876610 1352700 12997 985 13355 34296;34297 53524;53525 53525 2 TGQEVVFVAEPDNK ELTPHQTFVRLHNQKTGQEVVFVAEPDNKN KTGQEVVFVAEPDNKNVYKFELDTSERKIE K T G N K N 1 0 1 1 0 1 2 1 0 0 0 1 0 1 1 0 1 0 0 3 0 0 14 0 1531.7518 B2RE46;P04844;B4DJL0 B2RE46 443 456 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2 0.0029829 47.915 1 0.63736 0.62628 NaN 1 Median 0.63736 0.62628 NaN 1 0 Median NaN NaN NaN 0 0 Median 8721800 5632900 3088900 8721800 5632900 3088900 0 0 0 12998 894 13356 34298 53526 53526 1 TGQEYKPGNPPAEIGQNISSNSSASILESK AVKQLLSLKAEYKEKTGQEYKPGNPPAEIG QNISSNSSASILESKSLYDEVAAQGEVVRK K T G S K S 2 0 3 0 0 2 3 3 0 3 1 2 0 0 3 6 1 0 1 0 0 0 30 1 3102.5106 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 795 824 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 5.9434E-67 152.15 2 1 2.3956 2.7746 56.966 3 Median 2.4617 2.8788 5.2148 2 0 Median 1.2575 1.0755 NaN 1 0 Median 105050000 31887000 73161000 94009000 26548000 67461000 11038000 5338700 5699600 12999 1454 13357 34299;34300;34301 53527;53528;53529;53530;53531;53532;53533;53534;53535;53536 53531 10 TGQLFLK TTKPINGAIFIFNPRTGQLFLKIIHTSVWA AIFIFNPRTGQLFLKIIHTSVWAGQKRLGQ R T G L K I 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 7 0 805.46979 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1814 1820 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.024839 89.673 2 0.84318 0.93175 5.273 2 Median 0.84318 0.93175 5.273 2 0 Median NaN NaN NaN 0 0 Median 119510000 67981000 51530000 119510000 67981000 51530000 0 0 0 13000 1854 13358 34302;34303 53537;53538;53539;53540 53539 4 TGQPEELVSCSDCGR NYCDFCLGDSKINKKTGQPEELVSCSDCGR TGQPEELVSCSDCGRSGHPSCLQFTPVMMA K T G G R S 0 1 0 1 2 1 2 2 0 0 1 0 0 0 1 2 1 0 0 1 0 0 15 0 1693.7036 A0A024R582;J3KMZ8;Q92785 A0A024R582 286 300 DPF2 Zinc finger protein ubi-d4 yes no 2 0.0087206 49.31 3 1 1.5801 1.3734 NaN 1 Median NaN NaN NaN 0 0 Median 1.5801 1.3734 NaN 1 0 Median 1570000 702410 867600 0 0 0 1570000 702410 867600 13001 174 13359 34304;34305;34306;34307 53541;53542;53543;53544 53542 4 TGQPMINLYTDR ALGTKDHVMTPTNKKTGQPMINLYTDRETG NKKTGQPMINLYTDRETGKLKGEATVSFDD K T G D R E 0 1 1 1 0 1 0 1 0 1 1 0 1 0 1 0 2 0 1 0 0 0 12 0 1407.6816 Q70T18;Q59H57;B4DR70;A8K4H1;Q8TBR3;Q6IBQ5;H3BPE7;Q13344;P35637 Q70T18 50 61 FUS RNA-binding protein FUS yes no 2 0.0018042 55.314 2 2.1983 2.231 19.203 2 Median 2.1983 2.231 19.203 2 0 Median NaN NaN NaN 0 0 Median 22148000 7899800 14248000 22148000 7899800 14248000 0 0 0 13002 734 13360 34308;34309 53545;53546 53545 571 2 TGSQYDIQDAIDK TGSDGSTRVVLVDRKTGSQYDIQDAIDKGL RKTGSQYDIQDAIDKGLVDRKFFDQYRSGS K T G D K G 1 0 0 3 0 2 0 1 0 2 0 1 0 0 0 1 1 0 1 0 0 0 13 0 1452.6733 P15924;Q4LE79 P15924 2524 2536 DSP;DSP variant protein Desmoplakin yes no 2 0.00024023 88.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4800900 0 4800900 4800900 0 4800900 0 0 0 13003 1486 13361 34310 53547;53548 53547 2 TGSVTTTYCCNQDHCNK LIPRDRPFVCAPSSKTGSVTTTYCCNQDHC SVTTTYCCNQDHCNKIELPTTGPFSVKSSP K T G N K I 0 0 2 1 3 1 0 1 1 0 0 1 0 0 0 1 4 0 1 1 0 0 17 0 2044.8037 F8VRH6;F8VVC4;H0YHS4;F8W0K6;F8W1R9;B4DY26;B4DXN7;Q5T7S2;P36897;F8VXZ5 F8VRH6 23 39 TGFBR1 Receptor protein serine/threonine kinase;TGF-beta receptor type-1 yes no 3 0.0015989 50.079 1 1 1.272 1.0712 NaN 1 Median NaN NaN NaN 0 0 Median 1.272 1.0712 NaN 1 0 Median 3914900 837130 3077800 2340400 0 2340400 1574500 837130 737360 13004 1048 13362 34311;34312 53549;53550 53549 2 TGSYGALAEITASK RKDESPATWRLGLRKTGSYGALAEITASKE KTGSYGALAEITASKEGQKEKDTAGVTRSA K T G S K E 3 0 0 0 0 0 1 2 0 1 1 1 0 0 0 2 2 0 1 0 0 0 14 0 1367.6933 F8VZN8;A0A024RBF1;B2RAH5;O14974;H0YIS4;H0YHI8 F8VZN8 443 456 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 2 0.00091135 75.479 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6306700 0 6306700 6306700 0 6306700 0 0 0 13005 336 13363 34313 53551 53551 1 TGTAEMSSILEER IAARNFHASNTHLQKTGTAEMSSILEERIL QKTGTAEMSSILEERILGADTSVDLEETGR K T G E R I 1 1 0 0 0 0 3 1 0 1 1 0 1 0 0 2 2 0 0 0 0 0 13 0 1422.6661 V9HW26;P25705;K7ERX7;K7ESA0 V9HW26 46 58 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.0001385 84.507 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6214900 0 6214900 6214900 0 6214900 0 0 0 13006 1518 13364 34314 53552 53552 1285 1 TGTAYTFFTPNNIK EDYIHRIGRTARSTKTGTAYTFFTPNNIKQ KTGTAYTFFTPNNIKQVSDLISVLREANQA K T G I K Q 1 0 2 0 0 0 0 1 0 1 0 1 0 2 1 0 4 0 1 0 0 0 14 0 1573.7777 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 427 440 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 2.1413E-06 106.37 2 2 1.3751 1.4707 26.22 3 Plateau 1.3751 1.4805 NaN 1 0 Median 1.1737 0.94036 1.209 2 0 Median 78552000 25953000 52599000 57137000 15265000 41872000 21415000 10688000 10727000 13007 1009 13365 34315;34316;34317;34318 53553;53554;53555;53556;53557;53558;53559 53554 7 TGTITTFEHAHNMR GNIVGLVGVDQFLVKTGTITTFEHAHNMRV KTGTITTFEHAHNMRVMKFSVSPVVRVAVE K T G M R V 1 1 1 0 0 0 1 1 2 1 0 0 1 1 0 0 4 0 0 0 0 0 14 0 1614.7573 P13639;Q8TA90;Q6PK56 P13639 482 495 EEF2 Elongation factor 2 yes no 2;3 7.0536E-06 96.464 3 4.878 5.2306 7.3393 2 Median 4.878 5.2306 7.3393 2 0 Median NaN NaN NaN 0 0 Median 75776000 11957000 63819000 75776000 11957000 63819000 0 0 0 13008 1478 13366 34319;34320;34321 53560;53561;53562 53562 1231 3 TGTIVVEGHELHDEDIR SIKQLSSEELEQFQKTGTIVVEGHELHDED TIVVEGHELHDEDIRLMYTFDQATGGTAQF K T G I R L 0 1 0 2 0 0 3 2 2 2 1 0 0 0 0 0 2 0 0 2 0 0 17 0 1918.9385 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;B4DVX2;Q7L4K8;Q9P1N9 Q59G75 947 963 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 3 0.0058428 25.988 1 0.86027 0.74023 NaN 1 Median NaN NaN NaN 0 0 Median 0.86027 0.74023 NaN 1 0 Median 2679100 1476100 1202900 0 0 0 2679100 1476100 1202900 13009 1561 13367 34322 53563 53563 1 TGTLQPWNSDSTLNSR STIETVPYWTRSRRKTGTLQPWNSDSTLNS GTLQPWNSDSTLNSRQLEPRTETDSVGTPQ K T G S R Q 0 1 2 1 0 1 0 1 0 0 2 0 0 0 1 3 3 1 0 0 0 0 16 0 1775.8438 B2RE34;A0A024R136;Q9H0H5;F8VRD2;H0YIK5 B2RE34 249 264 RACGAP1 Rac GTPase-activating protein 1 yes no 2 0.00071287 66.267 2 1 1.9484 1.6678 NaN 1 Median NaN NaN NaN 0 0 Median 1.9484 1.6678 NaN 1 0 Median 6731000 4520600 2210400 3437600 3437600 0 3293300 1083000 2210400 13010 68 13368 34323;34324;34325 53564;53565;53566;53567;53568;53569 53565 6 TGTLTTNQMSVCR SVETLGCTSVICSDKTGTLTTNQMSVCRMF DKTGTLTTNQMSVCRMFILDRVEGDTCSLN K T G C R M 0 1 1 0 1 1 0 1 0 0 1 0 1 0 0 1 4 0 0 1 0 0 13 0 1467.681 A0A0S2Z3L2;P16615;H7C5W9;A8K9K1;Q93084 A0A0S2Z3L2 353 365 ATP2A2;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Calcium-transporting ATPase;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 2 0.0061911 48.004 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3266200 0 3266200 3266200 0 3266200 0 0 0 13011 554 13369 34326 53570 53570 409 1 TGTLVEEAFWIDK VRPFTLGQLKELLGRTGTLVEEAFWIDKIK GRTGTLVEEAFWIDKIKSHCFVTYSTVEEA R T G D K I 1 0 0 1 0 0 2 1 0 1 1 1 0 1 0 0 2 1 0 1 0 0 13 0 1507.7559 G3V3B0;Q69YJ6;S4R3H4;E7EQT4;Q9UKV3;B4DQZ7 G3V3B0 276 288 ACIN1;DKFZp667N107 Apoptotic chromatin condensation inducer in the nucleus yes no 2 5.1368E-09 120.06 2 1 0.94969 0.95586 36.122 3 Median 0.97553 0.98468 4.2004 2 0 Median 0.638 0.52784 NaN 1 0 Median 25490000 12035000 13455000 23665000 11288000 12378000 1824600 746960 1077600 13012 1220 13370 34327;34328;34329 53571;53572;53573;53574;53575;53576;53577 53576 7 TGTSCALDCGAGIGR SRKFLQRFLREGPNKTGTSCALDCGAGIGR TGTSCALDCGAGIGRITKRLLLPLFREVDM K T G G R I 2 1 0 1 2 0 0 4 0 1 1 0 0 0 0 1 2 0 0 0 0 0 15 0 1494.6555 A0A024R8E4;Q9BV86 A0A024R8E4 60 74 C9orf32;NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 2 0.00022504 72.531 2 1 1.8646 1.9152 10.333 3 Plateau 1.879 1.9045 0.87414 2 0 Median 1.834 1.5929 NaN 1 0 Median 38201000 13953000 24249000 36415000 13368000 23047000 1785800 584210 1201600 13013 248 13371 34330;34331;34332 53578;53579;53580 53578 3 TGVCISCDAGMCR GAKECSFCEDPRFARTGVCISCDAGMCRAY ARTGVCISCDAGMCRAYFHVTCAQKEGLLS R T G C R A 1 1 0 1 3 0 0 2 0 1 0 0 1 0 0 1 1 0 0 1 0 0 13 0 1485.5833 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 452 464 PHF14 PHD finger protein 14 yes no 2 0.0021347 54.784 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4617300 4617300 0 4617300 4617300 0 0 0 0 13014 590 13372 34333 53581 53581 446 1 TGVHHYSGNNIELGTACGK ALRKSEIEYYAMLAKTGVHHYSGNNIELGT HYSGNNIELGTACGKYYRVCTLAIIDPGDS K T G G K Y 1 0 2 0 1 0 1 4 2 1 1 1 0 0 0 1 2 0 1 1 0 0 19 0 2013.9327 E5RI99;A0A024R9D3;P62888;A0A0B4J213 E5RI99 69 87 RPL30 60S ribosomal protein L30 yes no 3 3.7114E-09 73.11 1 1 0.66096 0.62345 2.1713 2 Median 0.583 0.6331 NaN 1 0 Median 0.74933 0.61396 NaN 1 0 Median 48874000 28399000 20475000 46357000 27053000 19304000 2516800 1345800 1171000 13015 276 13373 34334;34335 53582;53583 53582 2 TGVTSTSDSEEEGDDQEGEK EGKKEVESKRKNLAKTGVTSTSDSEEEGDD TSDSEEEGDDQEGEKKRKGGRNFQTAHRRN K T G E K K 0 0 0 3 0 1 5 3 0 0 0 1 0 0 0 3 3 0 0 1 0 0 20 0 2098.8298 O75475 O75475 267 286 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 5.1916E-13 107.74 1 0.83748 0.84577 NaN 1 Median 0.83748 0.84577 NaN 1 0 Median NaN NaN NaN 0 0 Median 8326500 4483900 3842600 8326500 4483900 3842600 0 0 0 13016 1405 13374 34336 53584;53585;53586 53586 3 TGVTSTSDSEEEGDDQEGEKK EGKKEVESKRKNLAKTGVTSTSDSEEEGDD SDSEEEGDDQEGEKKRKGGRNFQTAHRRNM K T G K K R 0 0 0 3 0 1 5 3 0 0 0 2 0 0 0 3 3 0 0 1 0 0 21 1 2226.9248 O75475 O75475 267 287 PSIP1 PC4 and SFRS1-interacting protein yes yes 3 1.5935E-06 48.968 2 2 1.3263 1.3013 13.462 4 Median 1.0472 1.1841 18.711 2 0 Median 1.5078 1.3264 8.061 2 0 Median 9630900 3964800 5666200 6826800 2844200 3982600 2804100 1120600 1683500 13017 1405 13375 34337;34338;34339;34340 53587;53588;53589;53590;53591 53587 5 TGVVPQLVK YLTDGPNERIGMVVKTGVVPQLVKLLGASE IGMVVKTGVVPQLVKLLGASELPIVTPALR K T G V K L 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 3 0 0 9 0 939.57532 Q7Z726;A8K7D9;P52292 Q7Z726 292 300 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.001453 85.212 2 1 1.0939 1.228 50.382 3 Plateau 1.0964 1.2092 2.1915 2 0 Median 0.62121 0.50545 NaN 1 0 Median 106460000 53443000 53013000 99431000 49400000 50031000 7024700 4043200 2981500 13018 769 13376 34341;34342;34343 53592;53593;53594;53595;53596;53597 53595 6 TGYTLDVTTGQR TKGPDEAKIKALLERTGYTLDVTTGQRKYG LERTGYTLDVTTGQRKYGDPPPDSVYSGVQ R T G Q R K 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 0 4 0 1 1 0 0 12 0 1310.6466 B2R7W4;O43390;Q0VGD6;Q6MZS5;B4DMD1;Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645;F6UXX1 B2R7W4 134 145 HNRNPR;HNRPR;DKFZp686A13234;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2 4.9568E-23 159.83 2 2 1.2349 1.2039 38.525 4 Median 1.4671 1.6378 3.3277 2 0 Median 1.0015 0.84687 9.5538 2 0 Median 118640000 51697000 66943000 105720000 44946000 60773000 12921000 6751000 6170400 13019 855;864 13377 34344;34345;34346;34347 53598;53599;53600;53601;53602;53603;53604 53601 7 THEAQIQEMR QEVNILKKTLEEEAKTHEAQIQEMRQKHSQ EEEAKTHEAQIQEMRQKHSQAVEELAEQLE K T H M R Q 1 1 0 0 0 2 2 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 10 0 1241.5823 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1182 1191 MYH9 Myosin-9 yes no 2 0.00080077 81.017 2 5.1082 4.3418 NaN 1 Median NaN NaN NaN 0 0 Median 5.1082 4.3418 NaN 1 0 Median 3993400 359990 3633400 0 0 0 3993400 359990 3633400 13020 81 13378;13379 34348;34349 53605;53606 53606 73 2 THINIVVIGHVDSGK ______________________________ THINIVVIGHVDSGKSTTTGHLIYKFGGID K T H G K S 0 0 1 1 0 0 0 2 2 3 0 1 0 0 0 1 1 0 0 3 0 0 15 0 1587.8733 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q53GA1;A0A087WVQ9;B4DNE0;A0A087WV01;Q9H2I7;Q05639;A6PW80;Q5JR01;Q6NS35;Q6NSH7 Q6IPT9 6 20 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 3 0.00015314 56.215 2 1.7641 1.4038 14.363 2 Median NaN NaN NaN 0 0 Median 1.7641 1.4038 14.363 2 0 Median 21031000 7593100 13438000 0 0 0 21031000 7593100 13438000 13021 1658 13380 34350;34351 53607;53608;53609;53610 53607 4 THINYGVK YICRNFTGSSALLTRTHINYGVKGDVAVVR SSALLTRTHINYGVKGDVAVVRINSPNSKV R T H V K G 0 0 1 0 0 0 0 1 1 1 0 1 0 0 0 0 1 0 1 1 0 0 8 0 930.49232 E9KL44;P40939;B4DRH6 E9KL44 39 46 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.0013184 110.12 2 2 1.0878 1.236 27.233 4 Linear 1.1151 1.202 0.59249 2 0 Median 0.9791 0.76192 12.073 2 0 Median 78688000 37027000 41661000 71714000 33712000 38002000 6974400 3314800 3659600 13022 1228 13381 34352;34353;34354;34355 53611;53612;53613;53614 53612 4 THIVSIPLR KDNKLIFHKDRTDLKTHIVSIPLRGCEVIP DRTDLKTHIVSIPLRGCEVIPGLDSKHPLT K T H L R G 0 1 0 0 0 0 0 0 1 2 1 0 0 0 1 1 1 0 0 1 0 0 9 0 1034.6237 Q8N556 Q8N556 385 393 AFAP1 Actin filament-associated protein 1 yes yes 2 0.013328 60.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13023 1910 13382 34356 53615 53615 1 THLASDDLYK ELEEMGPSLDLVLRRTHLASDDLYKLSMKM LVLRRTHLASDDLYKLSMKMPKALKPKKKK R T H Y K L 1 0 0 2 0 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1161.5666 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 228 237 RPF2 Ribosome production factor 2 homolog yes no 2 0.00031636 90.263 2 2 1.0856 1.0173 8.9238 3 Plateau 0.90011 1.0179 NaN 1 0 Median 1.0862 0.87212 0.23514 2 0 Median 206020000 143740000 62288000 165450000 124560000 40892000 40572000 19175000 21397000 13024 773 13383 34357;34358;34359;34360 53616;53617;53618;53619;53620;53621 53617 6 THLSLSHNPEQK YTKQGFGNLPICMAKTHLSLSHNPEQKGVP MAKTHLSLSHNPEQKGVPTGFILPIRDIRA K T H Q K G 0 0 1 0 0 1 1 0 2 0 2 1 0 0 1 2 1 0 0 0 0 0 12 0 1389.7001 A0A024R652;P11586;F5H2F4;B7Z809;V9GYY3 A0A024R652 867 878 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 3 0.037644 23.809 1 1.8691 1.9505 NaN 1 Median 1.8691 1.9505 NaN 1 0 Median NaN NaN NaN 0 0 Median 12220000 3365500 8854200 12220000 3365500 8854200 0 0 0 13025 196 13384 34361 53622 53622 1 THMVVANTMEDFQK DIQVTLFTRASEDLKTHMVVANTMEDFQKI KTHMVVANTMEDFQKILDSGKIVQIPFCGE K T H Q K I 1 0 1 1 0 1 1 0 1 0 0 1 2 1 0 0 2 0 0 2 0 0 14 0 1649.7542 P07814;B4DP50 P07814 1422 1435 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0024451 57.348 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13026 1454 13385 34362;34363 53623;53624 53623 1162;1163 2 THNGESVSYLFSHVPL QVIDISMILAEAIRRTHNGESVSYLFSHVP HNGESVSYLFSHVPL_______________ R T H P L - 0 0 1 0 0 0 1 1 2 0 2 0 0 1 1 3 1 0 1 2 0 0 16 0 1785.8686 Q53FW2;P60891;B1ALA9;B7ZB02;A0A140VK41;P11908;H7C540 Q53FW2 303 318 PRPS1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2 no no 3 0.00088691 50.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4650000 0 0 4650000 0 0 0 0 0 13027 1626;616 13386 34364 53625 53625 1 THNIGFDK SRPLEGKKSLSLSAKTHNIGFDKDSCHSTT SLSLSAKTHNIGFDKDSCHSTTKTEASQEE K T H D K D 0 0 1 1 0 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 0 0 8 0 930.45593 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50 A0A024R250 694 701 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.019716 58.955 2 1.0162 1.0177 6.3178 2 Median 1.0162 1.0177 6.3178 2 0 Median NaN NaN NaN 0 0 Median 47914000 25229000 22685000 47914000 25229000 22685000 0 0 0 13028 104 13387 34365;34366 53626;53627;53628 53626 3 THNLEPYFESFINNLR QTKWELLQQVDTSTRTHNLEPYFESFINNL HNLEPYFESFINNLRRRVDQLKSDQSRLDS R T H L R R 0 1 3 0 0 0 2 0 1 1 2 0 0 2 1 1 1 0 1 0 0 0 16 0 1992.9694 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 224 239 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 1.9995E-47 162.46 7 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1317800000 1317800000 0 651500000 651500000 0 666300000 666300000 0 + 13029 1308;1309 13388 34367;34368;34369;34370;34371;34372;34373;34374;34375;34376;34377;34378 53629;53630;53631;53632;53633;53634;53635;53636;53637;53638;53639;53640;53641;53642;53643;53644;53645;53646;53647;53648;53649;53650 53630 22 THNLEPYFESFINNLRR QTKWELLQQVDTSTRTHNLEPYFESFINNL NLEPYFESFINNLRRRVDQLKSDQSRLDSE R T H R R R 0 2 3 0 0 0 2 0 1 1 2 0 0 2 1 1 1 0 1 0 0 0 17 1 2149.0705 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 224 240 KRT1 Keratin, type II cytoskeletal 1 no no 3;4 0.0023801 41.202 1 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59414000 59414000 0 4881300 4881300 0 54533000 54533000 0 + 13030 1308;1309 13389 34379;34380;34381;34382;34383 53651;53652;53653;53654;53655;53656 53651 6 THPVEIFYTPEPERDYLEAAIR QIYFDNCPLLTIPGRTHPVEIFYTPEPERD YTPEPERDYLEAAIRTVIQIHMCEEEEGDL R T H I R T 2 2 0 1 0 0 4 0 1 2 1 0 0 1 3 0 2 0 2 1 0 0 22 1 2645.3126 O43143;B4E0S6 O43143 316 337 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 3;4 0.0017187 28.412 4 1.0681 0.97355 4.9467 4 Median NaN NaN NaN 0 0 Median 1.0681 0.97355 4.9467 4 0 Median 27267000 13307000 13960000 0 0 0 27267000 13307000 13960000 13031 1379 13390 34384;34385;34386;34387 53657;53658;53659;53660;53661;53662;53663;53664;53665 53659 9 THQALGILSK DISQAAQILSSDPSRTHQALGILSKTYDAA SDPSRTHQALGILSKTYDAASYICEAAFDE R T H S K T 1 0 0 0 0 1 0 1 1 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1066.6135 P42166 P42166 611 620 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.018733 47.334 2 1.2393 0.97817 10.3 2 Median NaN NaN NaN 0 0 Median 1.2393 0.97817 10.3 2 0 Median 5257100 2350300 2906800 0 0 0 5257100 2350300 2906800 13032 1562 13391 34388;34389 53666;53667 53666 2 THQPSDEVGTSIEHPR DLRRSEVPCAPMPKKTHQPSDEVGTSIEHP HQPSDEVGTSIEHPREAEEVMDAGCQESAG K T H P R E 0 1 0 1 0 1 2 1 2 1 0 0 0 0 2 2 2 0 0 1 0 0 16 0 1788.8391 Q96F88;Q99575 Q96F88 752 767 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 1.0467E-06 89.311 2 0.27681 0.29536 2.2281 2 Median 0.27681 0.29536 2.2281 2 0 Median NaN NaN NaN 0 0 Median 58610000 43411000 15199000 58610000 43411000 15199000 0 0 0 13033 1965 13392 34390;34391 53668;53669 53669 1 THSIIPR IAVKVNPEREDSETRTHSIIPRGSLSLKVL EREDSETRTHSIIPRGSLSLKVLAELPIIV R T H P R G 0 1 0 0 0 0 0 0 1 2 0 0 0 0 1 1 1 0 0 0 0 0 7 0 822.47119 F2Z2U4;Q9Y4A5 F2Z2U4 211 217 TRRAP Transformation/transcription domain-associated protein yes no 2 0.041103 62.717 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3553500 0 3553500 3553500 0 3553500 0 0 0 13034 1253 13393 34392 53670 53670 1 THSVNGITEEADPTIYSGK SKGKGNKVSAEKVNKTHSVNGITEEADPTI NGITEEADPTIYSGKVIRPLRSVDPTQNEY K T H G K V 1 0 1 1 0 0 2 2 1 2 0 1 0 0 1 2 3 0 1 1 0 0 19 0 2017.9593 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93;Q8WU01 Q9GZV0 551 569 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 3 8.5394E-05 44.641 1 2.8315 2.9528 NaN 1 Median 2.8315 2.9528 NaN 1 0 Median NaN NaN NaN 0 0 Median 24416000 5110500 19306000 24416000 5110500 19306000 0 0 0 13035 42 13394 34393 53671 53671 1 THSVPATPTSTPVPNPEAESSSK NEPPGRELTKEDLFKTHSVPATPTSTPVPN TSTPVPNPEAESSSKEGELDARDLEMSKKV K T H S K E 2 0 1 0 0 0 2 0 1 0 0 1 0 0 5 5 4 0 0 2 0 0 23 0 2320.1183 A0A024R5D6;B5MBX0;Q96FF9 A0A024R5D6 105 127 CDCA5 Sororin yes no 3 6.5574E-10 65.149 3 2 0.63681 0.50807 36.296 3 Median 0.91502 0.94188 NaN 1 0 Median 0.63168 0.50245 1.5739 2 0 Median 44192000 21247000 22945000 35697000 16021000 19677000 8494600 5226600 3268100 13036 178 13395 34394;34395;34396;34397;34398 53672;53673;53674;53675;53676;53677;53678;53679;53680;53681;53682 53676 11 THTCQVIIENVSK SSGLDRMAKHLSQRKTHTCQVIIENVSKST RKTHTCQVIIENVSKSTSTSEPTTGCSLK_ K T H S K S 0 0 1 0 1 1 1 0 1 2 0 1 0 0 0 1 2 0 0 2 0 0 13 0 1527.7715 Q8ND82 Q8ND82 711 723 ZNF280C Zinc finger protein 280C yes yes 2 0.0013981 75.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2373600 0 2373600 0 0 0 2373600 0 2373600 13037 1924 13396 34399 53683 53683 1 THTIQGTIK QNWLIYTYGVTNSGKTHTIQGTIKDGGILP VTNSGKTHTIQGTIKDGGILPRSLALIFNS K T H I K D 0 0 0 0 0 1 0 1 1 2 0 1 0 0 0 0 3 0 0 0 0 0 9 0 997.55564 O95235;D6RBN1 O95235 167 175 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 1.5962E-34 196.79 1 2 0.96604 0.9211 11.404 2 Median 0.75191 0.84974 NaN 1 0 Median 1.2411 0.99846 NaN 1 0 Median 179290000 82650000 96644000 130700000 72486000 58216000 48592000 10164000 38429000 13038 1421 13397 34400;34401;34402 53684;53685;53686;53687;53688 53684 5 THVADFAPEVAWVTR YFPMFVSQSALEKEKTHVADFAPEVAWVTR THVADFAPEVAWVTRSGKTELAEPIAIRPT K T H T R S 3 1 0 1 0 0 1 0 1 0 0 0 0 1 1 0 2 1 0 3 0 0 15 0 1697.8526 P07814;B4DP50 P07814 1092 1106 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 0.0020663 53.828 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8454100 0 8454100 8454100 0 8454100 0 0 0 13039 1454 13398 34403 53689 53689 1 TIADLELHYQEFIR TIAKLKTMRQEDYMKTIADLELHYQEFIRN KTIADLELHYQEFIRNSQGSEMFGDDDKRK K T I I R N 1 1 0 1 0 1 2 0 1 2 2 0 0 1 0 0 1 0 1 0 0 0 14 0 1746.8941 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 579 592 DSP;DSP variant protein Desmoplakin yes no 3 0.0023096 40.278 1 0.55935 0.57482 NaN 1 Median 0.55935 0.57482 NaN 1 0 Median NaN NaN NaN 0 0 Median 14256000 7745900 6510500 14256000 7745900 6510500 0 0 0 13040 1486 13399 34404 53690 53690 1 TIADSLINSFLK GSSLDFFGQSYDEERTIADSLINSFLKIYN EERTIADSLINSFLKIYNGLFAISKAHEEQ R T I L K I 1 0 1 1 0 0 0 0 0 2 2 1 0 1 0 2 1 0 0 0 0 0 12 0 1320.7289 Q15058 Q15058 1262 1273 KIF14 Kinesin-like protein KIF14 yes yes 2 0.041638 43.282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2660900 0 2660900 2660900 0 2660900 0 0 0 13041 1751 13400 34405 53691 53691 1 TIAECLADELINAAK LLCTGAREAAFRNIKTIAECLADELINAAK TIAECLADELINAAKGSSNSYAIKKKDELE K T I A K G 4 0 1 1 1 0 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 15 0 1630.8236 M0R0F0;Q53G25;A0A024R4Q8;P46782;M0R0R2;M0QZN2 M0R0F0 168 182 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 1.618E-30 155.97 2 1 1.0561 1.2 59.824 3 Median 1.0527 1.1909 1.0765 2 0 Median 3.9055 3.3561 NaN 1 0 Median 352700000 170410000 182300000 266880000 129810000 137060000 85829000 40597000 45233000 13042 160 13401 34406;34407;34408 53692;53693;53694;53695;53696 53695 5 TIAFAHDSTR KLMSDLQKLIQGKIKTIAFAHDSTRVIQCY QGKIKTIAFAHDSTRVIQCYIQYGNEEQRK K T I T R V 2 1 0 1 0 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 0 0 10 0 1117.5516 Q15397 Q15397 172 181 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2;3 0.009241 54.982 4 0.98049 0.83201 11.757 2 Median NaN NaN NaN 0 0 Median 0.98049 0.83201 11.757 2 0 Median 10150000 4147900 6001800 0 0 0 10150000 4147900 6001800 13043 1761 13402 34409;34410;34411;34412 53697;53698;53699;53700;53701 53698 5 TIAFLLPMFR SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ TGSGKTIAFLLPMFRHIMDQRSLEEGEGPI K T I F R H 1 1 0 0 0 0 0 0 0 1 2 0 1 2 1 0 1 0 0 0 0 0 10 0 1207.6787 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 423 432 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0012803 73.931 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2854600 0 2854600 2854600 0 2854600 0 0 0 13044 511 13403 34413;34414;34415 53702;53703;53704 53703 360 3 TIAIIAEGIPEALTR AYDSTMETMNYAQIRTIAIIAEGIPEALTR TIAIIAEGIPEALTRKLIKKADQKGVTIIG R T I T R K 3 1 0 0 0 0 2 1 0 4 1 0 0 0 1 0 2 0 0 0 0 0 15 0 1566.8981 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 583 597 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.00038246 58.676 1 1 1.2218 1.1656 61.537 2 Median 1.7706 1.8011 NaN 1 0 Median 0.84314 0.75436 NaN 1 0 Median 8050100 2618600 5431500 7258700 2249400 5009300 791430 369190 422240 13045 89 13404 34416;34417 53705;53706 53705 2 TIAPQNAPR NSPIHHIPSRRSPAKTIAPQNAPRDESRGR RRSPAKTIAPQNAPRDESRGRSSFYPDGGD K T I P R D 2 1 1 0 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 9 0 966.52468 Q9NYF8;Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7;H0YF00 Q9NYF8 304 312 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.0003362 101.64 2 1.1017 1.1737 14.034 2 Median 1.1017 1.1737 14.034 2 0 Median NaN NaN NaN 0 0 Median 78199000 36881000 41318000 78199000 36881000 41318000 0 0 0 13046 2083 13405 34418;34419 53707;53708 53708 2 TIAQDYGVLK GLGPMNIPLVSDPKRTIAQDYGVLKADEGI SDPKRTIAQDYGVLKADEGISFRGLFIIDD R T I L K A 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1106.5972 Q06830;A0A0A0MSI0;B2R4P2 Q06830 111 120 PRDX1 Peroxiredoxin-1 yes no 2 0.0048804 70.919 2 1 3.1695 2.9987 32.93 2 Median 3.3673 3.7849 NaN 1 0 Median 2.9832 2.3758 NaN 1 0 Median 115690000 18060000 97631000 112740000 17077000 95661000 2953200 982910 1970300 13047 1690 13406 34420;34421;34422 53709;53710;53711;53712 53711 4 TIAVDFASEDIYDK QVSSEIKEKFKVETRTIAVDFASEDIYDKI RTIAVDFASEDIYDKIKTGLAGLEIGILVN R T I D K I 2 0 0 3 0 0 1 0 0 2 0 1 0 1 0 1 1 0 1 1 0 0 14 0 1585.7512 B4DWS6;B3KQJ0;D3DR22;Q53GQ0;E9PI21;A0A1B0GVY6 B4DWS6 96 109 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 2 0.033771 42.629 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13048 928 13407 34423 53713 53713 1 TICAEFAILR SDDNVFVGAPTGSGKTICAEFAILRMLLQS TGSGKTICAEFAILRMLLQSSEGRCVYITP K T I L R M 2 1 0 0 1 0 1 0 0 2 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1192.6274 O75643;A4FU77 O75643 1357 1366 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00086964 79.906 2 1 1.0134 1.016 NaN 1 Median 1.0134 1.016 NaN 1 0 Median NaN NaN NaN 0 0 Median 24882000 13375000 11507000 23846000 12339000 11507000 1036200 1036200 0 13049 1411 13408 34424;34425;34426 53714;53715;53716;53717 53716 4 TICSHVQNMIK VDKWWGNRKELATVRTICSHVQNMIKGVTL ATVRTICSHVQNMIKGVTLGFRYKMRSVYA R T I I K G 0 0 1 0 1 1 0 0 1 2 0 1 1 0 0 1 1 0 0 1 0 0 11 0 1329.6533 Q53Z07;P32969;E7ESE0;D6RAN4;H0Y9V9;B4E1M5;B4DLV8;Q2NKY6;H0Y9R4 Q53Z07 72 82 RPL9 60S ribosomal protein L9 yes no 2;3 4.5128E-17 155.06 4 1 1.344 1.4844 47.914 5 Median 1.3463 1.4974 1.5251 4 0 Median 0.65733 0.51167 NaN 1 0 Median 282790000 118010000 164780000 280600000 116750000 163850000 2190800 1264700 926030 13050 1537 13409 34427;34428;34429;34430;34431 53718;53719;53720;53721;53722;53723;53724;53725;53726;53727 53719 1298 10 TIDGILLLIER LFRTHIISDKMVQSKTIDGILLLIERERSG VQSKTIDGILLLIERERSGEAVDRSLLRSL K T I E R E 0 1 0 1 0 0 1 1 0 3 3 0 0 0 0 0 1 0 0 0 0 0 11 0 1254.7547 Q13619;A0A0A0MR50;B2RBV7 Q13619 192 202 CUL4A Cullin-4A no no 2 3.6127E-06 96.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13051 1718 13410 34432 53728 53728 1 TIDGQQTIIACIESHQFQPK VKDHYSNGFCTVYAKTIDGQQTIIACIESH QTIIACIESHQFQPKNFWNGRWRSEWKFTI K T I P K N 1 0 0 1 1 4 1 1 1 4 0 1 0 1 1 1 2 0 0 0 0 0 20 0 2313.1423 A8K0T9;A0A024R0E5;P52907 A8K0T9 147 166 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 3 0.032349 19.42 1 1.468 1.5284 NaN 1 Median 1.468 1.5284 NaN 1 0 Median NaN NaN NaN 0 0 Median 11600000 5729700 5870100 11600000 5729700 5870100 0 0 0 13052 43 13411 34433 53729 53729 1 TIEAEAAHGTVTR SLGLMTSVLVCPDGKTIEAEAAHGTVTRHY GKTIEAEAAHGTVTRHYREHQKGRPTSTNP K T I T R H 3 1 0 0 0 0 2 1 1 1 0 0 0 0 0 0 3 0 0 1 0 0 13 0 1354.6841 Q13584;Q53GL5;P48735;H0YL11;B4DSZ6 Q13584 308 320 IDH2 Isocitrate dehydrogenase [NADP];Isocitrate dehydrogenase [NADP], mitochondrial yes no 2 7.5482E-05 94.616 2 1.9395 1.9942 NaN 1 Median 1.9395 1.9942 NaN 1 0 Median NaN NaN NaN 0 0 Median 7794000 2307200 5486800 7794000 2307200 5486800 0 0 0 13053 1578 13412 34434;34435 53730;53731;53732 53732 3 TIEDDLVSALVR GYHGMQRNVGSSQFKTIEDDLVSALVRSGC QFKTIEDDLVSALVRSGCIPENHGEDMRKM K T I V R S 1 1 0 2 0 0 1 0 0 1 2 0 0 0 0 1 1 0 0 2 0 0 12 0 1329.714 F5GY32;A0A024RBS6;F5H1S9;G8JLB3;E5KMT6;E5KMT5;Q9Y606;F5H168;F8W9U5;F5H1B2;F5GXL3 F5GY32 83 94 PUS1 tRNA pseudouridine synthase;tRNA pseudouridine synthase A, mitochondrial yes no 2 0.00077045 85.377 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3910900 1285800 2625000 3910900 1285800 2625000 0 0 0 13054 346 13413 34436;34437 53733;53734 53734 2 TIEELQQK QQEPLLCPSYQSYFKTIEELQQKILCSKSE SYQSYFKTIEELQQKILCSKSENARLVVQI K T I Q K I 0 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 987.52368 CON__Q14525;Q14525;Q6A165;CON__Q9UE12;CON__Q15323;CON__A2A5Y0;CON__O76014;CON__REFSEQ:XP_986630;Q15323;Q14532;O76014;CON__Q9D646;CON__O76011;A0A140TA62;CON__Q6NTB9;CON__O76009;CON__Q8IUT8;A0A140TA69;O76009;O76011 CON__Q14525 109 116 KRT33B;KRTHA7;KRT31;KRT32;KRT37;KRT33A;KRT34 Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha3-I;Keratin, type I cuticular Ha4 yes no 2 0.03531 56.011 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1838000 0 1838000 0 0 0 1838000 0 1838000 + 13055 1169 13414 34438 53735 53735 1 TIEESEETLK SSYHKQQEELDALKKTIEESEETLKNTKEI DALKKTIEESEETLKNTKEIQRKAEEKYEV K T I L K N 0 0 0 0 0 0 4 0 0 1 1 1 0 0 0 1 2 0 0 0 0 0 10 0 1177.5714 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;B3KM27 A0A024R158 751 760 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.00072198 82.287 2 2 1.3317 1.2997 23.922 4 Median 0.92764 1.0592 1.4457 2 0 Median 1.9406 1.6018 2.0694 2 0 Median 404800000 195520000 209280000 331150000 171060000 160090000 73646000 24461000 49185000 13056 69 13415 34439;34440;34441;34442 53736;53737;53738;53739;53740;53741;53742;53743;53744;53745;53746 53745 11 TIELDGK TESYISTIGVDFKIRTIELDGKTIKLQIES IGVDFKIRTIELDGKTIKLQIESYANVKQW R T I G K T 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 7 0 774.41233 E9PLD0;Q9H0U4;B7Z8M7;Q6FIG4;Q5U0I6;P62820;Q9H1C9;B3KTE3;H0YMN7;Q59EP4;H0YNE9;B4DMS1;Q92930;A0A024R7I3;P61006 E9PLD0 49 55 RAB1B;RAB1A;RAB8B;RAB8A Ras-related protein Rab-1B;Ras-related protein Rab-1A;Ras-related protein Rab-8B;Ras-related protein Rab-8A no no 2 0.030326 68.915 1 1.7214 1.7849 NaN 1 Median 1.7214 1.7849 NaN 1 0 Median NaN NaN NaN 0 0 Median 29388000 10544000 18843000 29388000 10544000 18843000 0 0 0 13057 1246;226 13416 34443 53747 53747 1 TIEQNINNLNVSEADR TTKKAVKPKKKHLHRTIEQNINNLNVSEAD IEQNINNLNVSEADRKCEIDPMFQKTAASF R T I D R K 1 1 4 1 0 1 2 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 16 0 1828.8915 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 222 237 NCAPH Condensin complex subunit 2 yes no 2 9.5761E-34 155.66 2 2 1.1465 1.0887 22.551 4 Median 0.82335 0.8728 8.9402 2 0 Median 1.5643 1.2766 0.19139 2 0 Median 94835000 49475000 45360000 71810000 40323000 31487000 23025000 9151900 13873000 13058 740 13417 34444;34445;34446;34447 53748;53749;53750;53751;53752;53753;53754;53755;53756;53757 53750 10 TIEQNINNLNVSEADRK TTKKAVKPKKKHLHRTIEQNINNLNVSEAD EQNINNLNVSEADRKCEIDPMFQKTAASFD R T I R K C 1 1 4 1 0 1 2 0 0 2 1 1 0 0 0 1 1 0 0 1 0 0 17 1 1956.9865 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 222 238 NCAPH Condensin complex subunit 2 yes no 2;3 6.4824E-34 178.15 3 4 1.6104 1.3696 25.74 7 Median 0.78342 0.94537 4.9378 3 0 Plateau 1.7815 1.5584 6.4901 4 0 Linear 562480000 284900000 277590000 404150000 226760000 177390000 158330000 58138000 100200000 13059 740 13418 34448;34449;34450;34451;34452;34453;34454 53758;53759;53760;53761;53762;53763;53764;53765;53766;53767;53768;53769;53770 53768 13 TIFGSIPDIFDVHTK EGQRGGPILAPEEIKTIFGSIPDIFDVHTK TIFGSIPDIFDVHTKIKDDLEDLIVNWDES K T I T K I 0 0 0 2 0 0 0 1 1 3 0 1 0 2 1 1 2 0 0 1 0 0 15 0 1688.8774 Q9H8V3;H7C3G1 Q9H8V3 500 514 ECT2 Protein ECT2 yes no 3 0.0021063 26.781 2 1.0412 1.0593 13.306 2 Median 1.0412 1.0593 13.306 2 0 Median NaN NaN NaN 0 0 Median 14930000 7306700 7622900 14930000 7306700 7622900 0 0 0 13060 2043 13419 34455;34456 53771;53772 53772 2 TIGGGDDSFNTFFSETGAGK ______________________________ DDSFNTFFSETGAGKHVPRAVFVDLEPTVI K T I G K H 1 0 1 2 0 0 1 5 0 1 0 1 0 3 0 2 3 0 0 0 0 0 20 0 2006.8858 B3KT06;B3KPS3;P68363;A8JZY9;F8VVB9;B4DN58;F8VRZ4;F8VS66;F8VX09;F8VWV9;F8VRK0;F8VXZ7;F8W0F6;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;Q71U36;Q1ZYQ1;Q13748;Q6PEY2;F8VQQ4 B3KT06 6 25 TUBA1B;TUBA1A;TUBA1C;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2 5.3655E-41 160.84 5 2 1.4911 1.5013 29.19 4 Median 1.6465 1.9528 3.6221 2 0 Median 1.3629 1.1794 0.56377 2 0 Median 1823200000 720050000 1103100000 1511100000 587350000 923760000 312060000 132700000 179350000 13061 922;1257;1869 13420 34457;34458;34459;34460;34461;34462;34463 53773;53774;53775;53776;53777;53778;53779;53780;53781;53782;53783;53784;53785;53786;53787;53788;53789;53790;53791 53781 19 TIGGGDDSFTTFFCETGAGK LEHGIQPDGQMPSDKTIGGGDDSFTTFFCE DDSFTTFFCETGAGKHVPRAVFVDLEPTVI K T I G K H 1 0 0 2 1 0 1 5 0 1 0 1 0 3 0 1 4 0 0 0 0 0 20 0 2066.8891 P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366 41 60 TUBA4A Tubulin alpha-4A chain yes no 2 4.4047E-06 58.831 2 1 1.8005 1.8492 48.28 3 Plateau 1.7878 1.8317 11.38 2 0 Median 0.9801 0.80309 NaN 1 0 Median 44993000 19819000 25174000 36296000 14735000 21561000 8696700 5083500 3613200 13062 1659 13421 34464;34465;34466 53792;53793;53794 53793 2 TIGISVDPR LEELRVAGIHKKVARTIGISVDPRRRNKST HKKVARTIGISVDPRRRNKSTESLQANVQR R T I P R R 0 1 0 1 0 0 0 1 0 2 0 0 0 0 1 1 1 0 0 1 0 0 9 0 956.5291 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 93 101 RPL13 60S ribosomal protein L13 yes no 2 9.0351E-05 110.41 2 2 0.93971 1.1091 24.707 3 Plateau 0.93763 1.1018 5.1299 2 0 Median 0.82705 0.72155 NaN 1 0 Median 1027700000 517690000 509990000 951500000 491050000 460450000 76173000 26640000 49533000 13063 733 13422 34467;34468;34469;34470 53795;53796;53797;53798;53799 53797 5 TIGTGLVTNTLAMTEEEK ILEKGQRFTLRDGNRTIGTGLVTNTLAMTE TGLVTNTLAMTEEEKNIKWG__________ R T I E K N 1 0 1 0 0 0 3 2 0 1 2 1 1 0 0 0 5 0 0 1 0 0 18 0 1906.9558 P49411 P49411 430 447 TUFM Elongation factor Tu, mitochondrial yes yes 2 5.9013E-18 115.12 3 2.4186 2.6301 NaN 1 Median 2.4186 2.6301 NaN 1 0 Median NaN NaN NaN 0 0 Median 106440000 11704000 94740000 106440000 11704000 94740000 0 0 0 13064 1580 13423 34471;34472;34473 53800;53801;53802;53803 53803 1359 4 TIHAELSK IPILRAALKLEPSNKTIHAELSKLVKKHAA KLEPSNKTIHAELSKLVKKHAAQRSTETAL K T I S K L 1 0 0 0 0 0 1 0 1 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 897.49198 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;U3KQ64;A0A0A0MTJ1 B2R8G6 285 292 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 2 0.0061246 88.294 1 1.1631 1.1823 NaN 1 Median 1.1631 1.1823 NaN 1 0 Median NaN NaN NaN 0 0 Median 27904000 12527000 15377000 27904000 12527000 15377000 0 0 0 13065 232 13424 34474 53804 53804 1 TIHVMPDTPEIMLAK MNKRLYTEAWDNDKKTIHVMPDTPEIMLAK TIHVMPDTPEIMLAKLNRINYSDKLYKLAL K T I A K L 1 0 0 1 0 0 1 0 1 2 1 1 2 0 2 0 2 0 0 1 0 0 15 0 1694.8735 A0A087X1N7;P20929 A0A087X1N7 3705 3719 NEB Nebulin yes no 2 0.0060617 42.743 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106520000 0 106520000 106520000 0 106520000 0 0 0 13066 450 13425 34475 53805 53805 315 1 TIIFCETK VIGDVIRVYSGHQGRTIIFCETKKEAQELS YSGHQGRTIIFCETKKEAQELSQNSAIKQD R T I T K K 0 0 0 0 1 0 1 0 0 2 0 1 0 1 0 0 2 0 0 0 0 0 8 0 1010.5107 Q9NR30 Q9NR30 441 448 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.013467 65.246 1 2 1.1532 0.92201 11.299 3 Median 1.0804 1.1166 NaN 1 0 Median 1.1638 0.91821 0.58378 2 0 Median 41399000 18104000 23295000 32940000 14416000 18524000 8459000 3688500 4770500 13067 2065 13426 34476;34477;34478 53806;53807;53808 53807 3 TIIFCETKK VIGDVIRVYSGHQGRTIIFCETKKEAQELS SGHQGRTIIFCETKKEAQELSQNSAIKQDA R T I K K E 0 0 0 0 1 0 1 0 0 2 0 2 0 1 0 0 2 0 0 0 0 0 9 1 1138.6056 Q9NR30 Q9NR30 441 449 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.027149 54.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4066900 0 4066900 4066900 0 4066900 0 0 0 13068 2065 13427 34479 53809 53809 1 TIIGQQGDQSCANK ENLLWVDKYKPTSLKTIIGQQGDQSCANKL KTIIGQQGDQSCANKLLRWLRNWQKSSSED K T I N K L 1 0 1 1 1 3 0 2 0 2 0 1 0 0 0 1 1 0 0 0 0 0 14 0 1518.7097 P35251;Q14756 P35251 597 610 RFC1;LLDBP Replication factor C subunit 1 yes no 2 0.00049381 60.434 1 0.55489 0.45187 NaN 1 Median NaN NaN NaN 0 0 Median 0.55489 0.45187 NaN 1 0 Median 2672500 1623200 1049300 0 0 0 2672500 1623200 1049300 13069 1542 13428 34480 53810;53811 53811 2 TIIMWK TPQFPDMILSASRDKTIIMWKLTRDETNYG MILSASRDKTIIMWKLTRDETNYGIPQRAL K T I W K L 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 0 1 1 0 0 0 0 6 0 790.44113 E9KL35;P63244;D6RAC2;D6RHH4;D6R9Z1;D6R9L0;D6REE5;B4DVD2;D6RBD0;D6RFZ9;D6RAU2;E9PD14;B4E0C3;D6RGK8;D6R909;B4DWC6;I3QNU9 E9KL35 39 44 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.039158 58.661 2 1.9773 2.0142 NaN 1 Median 1.9773 2.0142 NaN 1 0 Median NaN NaN NaN 0 0 Median 12299000 3957200 8341500 12299000 3957200 8341500 0 0 0 13070 1227 13429 34481;34482 53812;53813 53813 939 2 TIIQNPTDQQK MLSHQLKQHVIDGEKTIIQNPTDQQKKDHE DGEKTIIQNPTDQQKKDHEKAEFEVHEVYA K T I Q K K 0 0 1 1 0 3 0 0 0 2 0 1 0 0 1 0 2 0 0 0 0 0 11 0 1284.6674 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08;F8VR77 A8K6Y1 200 210 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.00092259 71.451 1 1 2.5161 2.7676 NaN 1 Median 2.5161 2.7676 NaN 1 0 Median NaN NaN NaN 0 0 Median 44660000 11263000 33396000 42456000 11263000 31192000 2203700 0 2203700 13071 328 13430 34483;34484 53814;53815;53816 53814 3 TILEEEITPTIQK QKTIEKKEAKLKEIKTILEEEITPTIQKLK IKTILEEEITPTIQKLKEERSSYLEYQKVM K T I Q K L 0 0 0 0 0 1 3 0 0 3 1 1 0 0 1 0 3 0 0 0 0 0 13 0 1513.8239 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q7Z2X1;Q05D74;Q6P712;Q5T821 A0A024R158 197 209 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.0011E-18 141.95 2 3 1.2094 1.2111 26.583 4 Median 0.82516 0.96713 1.3116 2 0 Median 1.7906 1.5312 2.6592 2 0 Median 765400000 371080000 394320000 595430000 309940000 285500000 169960000 61140000 108820000 13072 69 13431 34485;34486;34487;34488;34489 53817;53818;53819;53820;53821;53822;53823;53824;53825;53826;53827;53828;53829;53830;53831;53832;53833;53834 53819 18 TILMMGR TPGKKEDLYLKPIQRTILMMGRYVEPIEDV LYLKPIQRTILMMGRYVEPIEDVPCGNIVG R T I G R Y 0 1 0 0 0 0 0 1 0 1 1 0 2 0 0 0 1 0 0 0 0 0 7 0 820.42992 P13639;Q8TA90;Q6PK56;B4DRE8 P13639 450 456 EEF2 Elongation factor 2 yes no 2 0.016598 44.721 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12523000 0 12523000 12523000 0 12523000 0 0 0 13073 1478 13432 34490 53835 53835 1232;1233 1 TILSNQTVDIPENVDITLK ______________________________ NQTVDIPENVDITLKGRTVIVKGPRGTLRR K T I L K G 0 0 2 2 0 1 1 0 0 3 2 1 0 0 1 1 3 0 0 2 0 0 19 0 2112.1314 Q53Z07;P32969;E7ESE0;D6RAN4;B4E1M5;B4DLV8 Q53Z07 3 21 RPL9 60S ribosomal protein L9 yes no 2 1.1279E-17 124.45 3 1 0.94616 1.0178 12.038 4 Median 0.94013 1.1341 11.607 3 0 Plateau 1.048 0.90958 NaN 1 0 Median 2253200000 1166600000 1086600000 2120600000 1101600000 1019000000 132570000 64988000 67578000 13074 1537 13433 34491;34492;34493;34494 53836;53837;53838;53839;53840;53841;53842;53843;53844;53845;53846 53841 11 TINAGEELTFDYQMK NLDTRLPRIALFSTRTINAGEELTFDYQMK TINAGEELTFDYQMKGSGDISSDSIDHSPA R T I M K G 1 0 1 1 0 1 2 1 0 1 1 1 1 1 0 0 2 0 1 0 0 0 15 0 1758.8135 Q9H5I1;Q5JSS2;H0Y306 Q9H5I1 361 375 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 yes no 2 0.00083235 62.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7265400 0 7265400 7265400 0 7265400 0 0 0 13075 2036 13434 34495 53847 53847 1871 1 TINLYPLTNYTFGTK GNKYIQQTKPLTLERTINLYPLTNYTFGTK TINLYPLTNYTFGTKEPLYEKDSSVAARFQ R T I T K E 0 0 2 0 0 0 0 1 0 1 2 1 0 1 1 0 4 0 2 0 0 0 15 0 1744.9036 B2R6U8;A0A024R6W2;O43809;Q5HYH5 B2R6U8 36 50 NUDT21;DKFZp313O211 Cleavage and polyadenylation specificity factor subunit 5 yes no 2 0.026418 28.764 1 1.1045 1.0927 NaN 1 Median 1.1045 1.0927 NaN 1 0 Median NaN NaN NaN 0 0 Median 8335200 4503300 3831900 8335200 4503300 3831900 0 0 0 13076 209 13435 34496 53848 53848 1 TIPDVFPHLPLIAITR ______________________________ IPDVFPHLPLIAITRNPVFPRFIKIIEVKN M T I T R N 1 1 0 1 0 0 0 0 1 3 2 0 0 1 3 0 2 0 0 1 0 0 16 0 1802.0454 K7EJE8;K7EKE6;B3KU28 K7EJE8 2 17 LONP1 Lon protease homolog, mitochondrial yes no 3 0.0048095 42.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4470900 0 4470900 4470900 0 4470900 0 0 0 13077 946 13436 34497 53849 53849 1 TIPLTDNTVIEEHLGK RELILKRGQAKVKNKTIPLTDNTVIEEHLG IPLTDNTVIEEHLGKFGVICLEDLIHEIAF K T I G K F 0 0 1 1 0 0 2 1 1 2 2 1 0 0 1 0 3 0 0 1 0 0 16 0 1778.9414 A0A024RD36;Q6DKI1;B3KMP5;A8K5J5 A0A024RD36 173 188 RPL7L1 60S ribosomal protein L7-like 1 yes no 2;3 5.6699E-26 135.6 5 2 0.97698 1.005 8.0494 4 Linear 0.8835 0.9953 3.004 2 0 Median 1.0912 0.87684 4.9779 2 0 Median 279040000 137750000 141290000 237480000 118250000 119230000 41554000 19493000 22061000 13078 378 13437 34498;34499;34500;34501;34502;34503;34504 53850;53851;53852;53853;53854;53855;53856;53857;53858;53859;53860;53861 53857 12 TIPNDPGFVVTLSNR FRDLYHRVDVIFCDKTIPNDPGFVVTLSNR TIPNDPGFVVTLSNRMNYFQVAKTVAQRLN K T I N R M 0 1 2 1 0 0 0 1 0 1 1 0 0 1 2 1 2 0 0 2 0 0 15 0 1628.8522 Q93009;Q6U8A4;B7Z855;H3BND8;B7Z7T5 Q93009 802 816 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 7.3119E-06 95.018 2 2 0.76905 0.74613 11.025 4 Median 0.64107 0.67789 15.364 2 0 Median 0.89747 0.75512 3.4936 2 0 Median 81150000 45329000 35822000 69996000 40301000 29694000 11155000 5027100 6127400 13079 1954 13438 34505;34506;34507;34508 53862;53863;53864;53865;53866;53867;53868 53864 7 TIPSWATLSASQLAR DEKDQSKEKEKKVKKTIPSWATLSASQLAR TIPSWATLSASQLARAQKQTPMASSPRPKM K T I A R A 3 1 0 0 0 1 0 0 0 1 2 0 0 0 1 3 2 1 0 0 0 0 15 0 1600.8573 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 132 146 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0001089 93.959 2 2 0.66169 0.66883 1.889 4 Median 0.57336 0.66456 2.9667 2 0 Median 0.77135 0.66883 1.2216 2 0 Median 516420000 309460000 206960000 378200000 236380000 141820000 138210000 73080000 65135000 13080 1817 13439 34509;34510;34511;34512 53869;53870;53871;53872;53873;53874;53875;53876;53877;53878;53879 53877 11 TIPVILDGK IMKKGYKVPTPIQRKTIPVILDGKDVVAMA TPIQRKTIPVILDGKDVVAMARTGSGKTAC K T I G K D 0 0 0 1 0 0 0 1 0 2 1 1 0 0 1 0 1 0 0 1 0 0 9 0 954.57498 Q8TDD1;F8VRX4 Q8TDD1 126 134 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.0043738 69.423 2 0.94824 1.0098 4.1554 2 Median 0.94824 1.0098 4.1554 2 0 Median NaN NaN NaN 0 0 Median 68328000 35711000 32617000 68328000 35711000 32617000 0 0 0 13081 1933 13440 34513;34514 53880;53881;53882;53883 53883 4 TIQAHEGFVR GEVRIWNLTQRNCIRTIQAHEGFVRGICTR RNCIRTIQAHEGFVRGICTRFCGTSFFTVG R T I V R G 1 1 0 0 0 1 1 1 1 1 0 0 0 1 0 0 1 0 0 1 0 0 10 0 1156.5989 A0A087WT20;Q9NV06;B3KME9 A0A087WT20 256 265 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2;3 0.00073926 82.008 2 3 1.3863 1.1898 2.5241 5 Median 1.0625 1.2002 1.2227 2 0 Median 1.4424 1.1811 2.9094 3 0 Median 215530000 100930000 114590000 184340000 89004000 95332000 31190000 11930000 19260000 13082 402 13441 34515;34516;34517;34518;34519 53884;53885;53886;53887;53888;53889;53890;53891 53889 8 TIQFVDWCPTGFK PKDVNAAIATIKTKRTIQFVDWCPTGFKVG KRTIQFVDWCPTGFKVGINYQPPTVVPGGD R T I F K V 0 0 0 1 1 1 0 1 0 1 0 1 0 2 1 0 2 1 0 1 0 0 13 0 1597.7599 Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 Q71U36 340 352 TUBA1C;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2 8.5065E-06 116.77 2 2 1.1302 1.0467 14.512 4 Median 1.0969 1.198 3.0716 2 0 Median 1.1544 0.93351 0.16445 2 0 Median 103720000 47983000 55738000 88616000 41082000 47534000 15105000 6900800 8203900 13083 1257;1869 13442 34520;34521;34522;34523 53892;53893;53894;53895;53896;53897;53898;53899 53896 8 TIQGHLQSENFK TKLCQIFSDLNATYRTIQGHLQSENFKQRV TYRTIQGHLQSENFKQRVMTCFRAWEDWAI R T I F K Q 0 0 1 0 0 2 1 1 1 1 1 1 0 1 0 1 1 0 0 0 0 0 12 0 1400.7048 O15042;E7ET15 O15042 636 647 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.0014398 69.721 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13084 1374 13443 34524 53900 53900 1 TIQTIALITYLMEHK NNLNGILADEMGLGKTIQTIALITYLMEHK TIQTIALITYLMEHKRINGPFLIIVPLSTL K T I H K R 1 0 0 0 0 1 1 0 1 3 2 1 1 0 0 0 3 0 1 0 0 0 15 0 1773.9699 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8;A0A0U1RQE1;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 A7E2E1 786 800 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 3 0.00043849 46.926 1 1.2678 1.2902 NaN 1 Median 1.2678 1.2902 NaN 1 0 Median NaN NaN NaN 0 0 Median 14059000 6160200 7898400 14059000 6160200 7898400 0 0 0 13085 695;1595 13444 34525 53901 53901 538 1 TIQTPIGSTWNTQR RVLPYPFTHHWQFERTIQTPIGSTWNTQRA RTIQTPIGSTWNTQRAFQKLTTPKVVTKPG R T I Q R A 0 1 1 0 0 2 0 1 0 2 0 0 0 0 1 1 4 1 0 0 0 0 14 0 1601.8162 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 698 711 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C no no 2 5.8736E-38 172.17 2 2 0.81716 0.90173 15.246 3 Median 0.80448 0.87786 3.7943 2 0 Median 1.4051 1.1385 NaN 1 0 Median 109510000 51337000 58172000 89838000 46761000 43077000 19672000 4576400 15095000 13086 2008;393 13445 34526;34527;34528;34529 53902;53903;53904;53905;53906;53907;53908 53905 7 TIQVDNTDAEGR KANKPGDVVRAKNGKTIQVDNTDAEGRLIL NGKTIQVDNTDAEGRLILADALCYAHTFNP K T I G R L 1 1 1 2 0 1 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 12 0 1317.6161 B4DQG5;V9HW38;P28838 B4DQG5 196 207 HEL-S-106;LAP3 Cytosol aminopeptidase yes no 2 5.1E-05 94.309 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12060000 0 12060000 12060000 0 12060000 0 0 0 13087 1023 13446 34530;34531 53909;53910;53911 53911 3 TIRYPDPLIK VGTKGIPHLVTHDARTIRYPDPLIKVNDTI THDARTIRYPDPLIKVNDTIQIDLETGKIT R T I I K V 0 1 0 1 0 0 0 0 0 2 1 1 0 0 2 0 1 0 1 0 0 0 10 1 1214.7023 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47 B2R491 146 155 RPS4X;RPS4Y2 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 3 0.033833 33.039 2 1.1397 1.2682 3.6801 2 Median 1.1397 1.2682 3.6801 2 0 Median NaN NaN NaN 0 0 Median 18597000 9916100 8680600 18597000 9916100 8680600 0 0 0 13088 824 13447 34532;34533 53912;53913 53913 1 TISHVIIGLK LTPCETENPMGGYGKTISHVIIGLKTAKGT GGYGKTISHVIIGLKTAKGTKQLKLDPSIF K T I L K T 0 0 0 0 0 0 0 1 1 3 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1079.6703 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 153 162 RUVBL1 RuvB-like 1 yes no 2;3 0.000773 69.716 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17565000 0 17565000 17565000 0 17565000 0 0 0 13089 1076 13448 34534;34535;34536 53914;53915;53916;53917 53916 4 TISSYTAFSR EPQMVLFNLYDDWLKTISSYTAFSRLILIL DDWLKTISSYTAFSRLILILRALHVNNDRA K T I S R L 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 3 2 0 1 0 0 0 10 0 1131.556 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1926 1935 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.016989 54.982 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13090 1854 13449 34537 53918 53918 1 TITGNSAAVITPFK GTPKGEAVLGTHKLKTITGNSAAVITPFKL KTITGNSAAVITPFKLTTEATQTPVSNKKP K T I F K L 2 0 1 0 0 0 0 1 0 2 0 1 0 1 1 1 3 0 0 1 0 0 14 0 1418.7769 Q9BXS6;A8K4B4 Q9BXS6 328 341 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.00015145 76.522 1 0.5446 0.42397 NaN 1 Median NaN NaN NaN 0 0 Median 0.5446 0.42397 NaN 1 0 Median 3721800 2277300 1444500 0 0 0 3721800 2277300 1444500 13091 2014 13450 34538 53919 53919 1 TITLEVEPSDTIENVK ______________________________ ITLEVEPSDTIENVKAKIQDKEGIPPDQQR K T I V K A 0 0 1 1 0 0 3 0 0 2 1 1 0 0 1 1 3 0 0 2 0 0 16 0 1786.92 Q5RKT7;B2RDW1;P62979;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;M0R1V7;Q49A90;Q9UFQ0;Q96H31;Q66K58;Q59EM9;J3QSA3;F5GZ39 Q5RKT7 12 27 RPS27A;HEL112;UBB;UBC;UBA52;UbC;DKFZp434K0435 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2 3.455E-110 236.11 6 2 0.92031 1.0324 15.933 7 Median 0.8848 1.0687 19.514 5 0 Median 1.1107 0.98845 0.050809 2 0 Median 21834000000 11372000000 10462000000 20463000000 10726000000 9737000000 1371400000 645940000 725420000 13092 891 13451 34539;34540;34541;34542;34543;34544;34545;34546 53920;53921;53922;53923;53924;53925;53926;53927;53928;53929;53930;53931;53932;53933;53934;53935;53936;53937;53938;53939;53940;53941;53942;53943;53944;53945;53946;53947;53948 53929 29 TITQIEEFSDVNEGEK VDSEDEKDPEWLREKTITQIEEFSDVNEGE ITQIEEFSDVNEGEKEVMKLWNLHVMKHGF K T I E K E 0 0 1 1 0 1 4 1 0 2 0 1 0 1 0 1 2 0 0 1 0 0 16 0 1837.8582 J3QQW9;Q15022;A8K1U9 J3QQW9 573 588 SUZ12 Polycomb protein SUZ12 yes no 2 1.4509E-33 151.78 3 2 1.4394 1.3451 21.617 4 Median 1.0322 1.0896 10.441 2 0 Median 1.9476 1.5604 1.6368 2 0 Median 92570000 43417000 49154000 68507000 34809000 33698000 24064000 8607700 15456000 13093 1336 13452 34547;34548;34549;34550;34551 53949;53950;53951;53952;53953;53954;53955;53956;53957;53958;53959;53960;53961 53952 13 TITYQAVPSEVPNEEPK QVSWQPFLDGIFPAKTITYQAVPSEVPNEE TYQAVPSEVPNEEPKVATAYRPPALRNKPI K T I P K V 1 0 1 0 0 1 3 0 0 1 0 1 0 0 3 1 2 0 1 2 0 0 17 0 1900.9418 Q9BY44;F8WAE5;H7C5R5 Q9BY44 425 441 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 2 0.020255 39.878 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5578000 0 5578000 5578000 0 5578000 0 0 0 13094 2017 13453 34552 53962 53962 1 TIVEELLADSEFR ADFYHSRIPKKQRKRTIVEELLADSEFRRY KRTIVEELLADSEFRRYNRRKYSEIMAEKA R T I F R R 1 1 0 1 0 0 3 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 13 0 1520.7722 Q5QJE6 Q5QJE6 713 725 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 2.1727E-23 151.15 2 0.85808 0.93804 6.5314 2 Median 0.85808 0.93804 6.5314 2 0 Median NaN NaN NaN 0 0 Median 89710000 48570000 41140000 89710000 48570000 41140000 0 0 0 13095 1813 13454 34553;34554 53963;53964;53965 53965 3 TIVEELLADSEFRR ADFYHSRIPKKQRKRTIVEELLADSEFRRY RTIVEELLADSEFRRYNRRKYSEIMAEKAA R T I R R Y 1 2 0 1 0 0 3 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 14 1 1676.8733 Q5QJE6 Q5QJE6 713 726 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 3 0.0017315 32.734 2 1.1603 1.2529 NaN 1 Median 1.1603 1.2529 NaN 1 0 Median NaN NaN NaN 0 0 Median 22786000 12962000 9823800 22786000 12962000 9823800 0 0 0 13096 1813 13455 34555;34556 53966;53967 53967 2 TIVFVETK LIRLMEEIMSEKENKTIVFVETKRRCDELT MSEKENKTIVFVETKRRCDELTRKMRRDGW K T I T K R 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 2 0 0 2 0 0 8 0 935.53278 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3QSF1 B4DN41 333 340 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.014196 63.565 2 1.197 1.2983 2.6596 2 Median 1.197 1.2983 2.6596 2 0 Median NaN NaN NaN 0 0 Median 80438000 36613000 43824000 80438000 36613000 43824000 0 0 0 13097 1009 13456 34557;34558 53968;53969;53970 53969 3 TIVITSHPGQIVK ALCGFQKPISTLDNRTIVITSHPGQIVKHG NRTIVITSHPGQIVKHGDIKCVLNEGMPIY R T I V K H 0 0 0 0 0 1 0 1 1 3 0 1 0 0 1 1 2 0 0 2 0 0 13 0 1391.8136 P31689;B7Z5C0;Q9NXZ8 P31689 284 296 DNAJA1;HDJ2 DnaJ homolog subfamily A member 1 yes no 2;3 0.00013549 96.015 5 3 0.97275 0.89777 40.019 6 Median 1.2356 1.2936 5.6924 3 0 Median 0.82465 0.64844 3.0446 3 0 Plateau 116400000 54660000 61741000 101500000 46593000 54906000 14902000 8067100 6834600 13098 1535 13457 34559;34560;34561;34562;34563;34564;34565;34566 53971;53972;53973;53974;53975;53976;53977;53978;53979;53980;53981;53982;53983;53984 53974 14 TIVLQEGNSQK IQELQQSLNQDFHQKTIVLQEGNSQKKSNI FHQKTIVLQEGNSQKKSNISEKTKRLNELK K T I Q K K 0 0 1 0 0 2 1 1 0 1 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1215.6459 A0A024R8Y0;Q9BZD4;E9PQC4 A0A024R8Y0 202 212 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 0.00036511 84.213 3 2 1.0368 0.86787 5.1126 3 Median 0.9023 0.9098 NaN 1 0 Median 1.0422 0.84434 3.8873 2 0 Median 18420000 13846000 4574400 14510000 11829000 2681100 3910000 2016700 1893300 13099 264 13458 34567;34568;34569;34570;34571 53985;53986;53987;53988;53989;53990;53991 53985 7 TIYPLADLLAR NQITLVEDVLAKLCKTIYPLADLLARPLPE KLCKTIYPLADLLARPLPEGVDPLKLEIYL K T I A R P 2 1 0 1 0 0 0 0 0 1 3 0 0 0 1 0 1 0 1 0 0 0 11 0 1244.7129 O95425;B4E3H1;Q569J5;B4E3N7 O95425 2155 2165 SVIL Supervillin yes no 2 0.0063276 54.608 2 3.6962 3.961 NaN 1 Median 3.6962 3.961 NaN 1 0 Median NaN NaN NaN 0 0 Median 6929300 1089500 5839900 6929300 1089500 5839900 0 0 0 13100 1425 13459 34572;34573 53992;53993;53994;53995 53992 4 TIYSGEENMDITK KMYCNPDAMSSLTEKTIYSGEENMDITKSH EKTIYSGEENMDITKSHTVAIDNQIFKQDQ K T I T K S 0 0 1 1 0 0 2 1 0 2 0 1 1 0 0 1 2 0 1 0 0 0 13 0 1499.6814 Q8NG31;E9PPJ1 Q8NG31 502 514 CASC5 Protein CASC5 yes no 2 0.0042478 51.252 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5016800 0 5016800 5016800 0 5016800 0 0 0 13101 1928 13460 34574;34575 53996;53997 53996 1766 2 TKDDIIICEIGDVFK KDVVVQHVHFDGLGRTKDDIIICEIGDVFK TKDDIIICEIGDVFKAKNLIEVMRKSHEAR R T K F K A 0 0 0 3 1 0 1 1 0 4 0 2 0 1 0 0 1 0 0 1 0 0 15 1 1764.8968 Q9Y512 Q9Y512 58 72 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 3 0.05949 11.606 1 2.9024 2.5484 NaN 1 Median NaN NaN NaN 0 0 Median 2.9024 2.5484 NaN 1 0 Median 2766300 852950 1913400 0 0 0 2766300 852950 1913400 13102 2147 13461 34576 53998 53998 1 TKEDILESK VNLSPKLIQPGTFTKTKEDILESKSEQTKS PGTFTKTKEDILESKSEQTKSKQRDTQERK K T K S K S 0 0 0 1 0 0 2 0 0 1 1 2 0 0 0 1 1 0 0 0 0 0 9 1 1061.5605 B5BUA4;Q5FBB7 B5BUA4 268 276 SGOL1 Shugoshin-like 1 yes no 2 0.0015688 103.26 1 0.8197 0.93463 NaN 1 Median 0.8197 0.93463 NaN 1 0 Median NaN NaN NaN 0 0 Median 7391600 4766200 2625400 7391600 4766200 2625400 0 0 0 13103 1075 13462 34577 53999 53999 1 TKPYIQVDIGGGQTK QQDIKFLPFKVVEKKTKPYIQVDIGGGQTK TKPYIQVDIGGGQTKTFAPEEISAMVLTKM K T K T K T 0 0 0 1 0 2 0 3 0 2 0 2 0 0 1 0 2 0 1 1 0 0 15 1 1603.857 V9HWB4;P11021;B4DEF7 V9HWB4 124 138 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 3 0.019365 24.043 1 0.63709 0.55847 NaN 1 Median NaN NaN NaN 0 0 Median 0.63709 0.55847 NaN 1 0 Median 1694100 871200 822920 0 0 0 1694100 871200 822920 13104 1466 13463 34578 54000 54000 1 TLAEHQQLIPLVEK RRKHNYLPFIMELLKTLAEHQQLIPLVEKA KTLAEHQQLIPLVEKAKEKQNAKKAQETK_ K T L E K A 1 0 0 0 0 2 2 0 1 1 3 1 0 0 1 0 1 0 0 1 0 0 14 0 1617.909 Q5LJA5;Q5LJA9;Q9Y5K5;B2RB07;H0Y4E0;B4DW59;B7Z9U9;H0Y6Y4;H0Y4K0;B4DKB3;H0Y636 Q5LJA5 328 341 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 3 0.0035446 36.345 2 0.81297 0.83452 71.353 2 Median 0.81297 0.83452 71.353 2 0 Median NaN NaN NaN 0 0 Median 30190000 14075000 16115000 30190000 14075000 16115000 0 0 0 13105 1811 13464 34579;34580 54001;54002;54003 54002 3 TLAFSIPILMQLK HGRELLASAPTGSGKTLAFSIPILMQLKQP GKTLAFSIPILMQLKQPANKGFRALIISPT K T L L K Q 1 0 0 0 0 1 0 0 0 2 3 1 1 1 1 1 1 0 0 0 0 0 13 0 1473.8629 Q9Y2R4;Q59H21;B3KM65 Q9Y2R4 216 228 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 0.0099734 43.282 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4541700 0 4541700 4541700 0 4541700 0 0 0 13106 2126 13465 34581;34582 54004;54005 54004 1954 2 TLAGLPLLVAYK EAAQGVKILGKDLEKTLAGLPLLVAYKEDE LEKTLAGLPLLVAYKEDEIPVLKDELIHEL K T L Y K E 2 0 0 0 0 0 0 1 0 0 4 1 0 0 1 0 1 0 1 1 0 0 12 0 1257.7697 Q8N5A0;A0A087WUT6;O60841;B3KM86;D3DVI5 Q8N5A0 941 952 EIF5B Eukaryotic translation initiation factor 5B yes no 2 1.8274E-05 104.2 2 2.1077 2.1686 2.2095 2 Median 2.1077 2.1686 2.2095 2 0 Median NaN NaN NaN 0 0 Median 27117000 8489200 18627000 27117000 8489200 18627000 0 0 0 13107 414 13466 34583;34584 54006;54007;54008;54009 54009 4 TLAQAMLNNAQPDQYEAPDK YCEPVYQRCVNLVQKTLAQAMLNNAQPDQY MLNNAQPDQYEAPDKDFMIVALDLLSGLAE K T L D K D 4 0 2 2 0 3 1 0 0 0 2 1 1 0 2 0 1 0 1 0 0 0 20 0 2217.0372 A0A024RAM0;Q92973 A0A024RAM0 627 646 TNPO1 Transportin-1 yes no 2 0.0032911 44.457 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13108 309 13467 34585 54010 54010 226 1 TLATDILMGVLK LERYGVIILDEAHERTLATDILMGVLKEVV HERTLATDILMGVLKEVVRQRSDLKVIVMS R T L L K E 1 0 0 1 0 0 0 1 0 1 3 1 1 0 0 0 2 0 0 1 0 0 12 0 1273.7316 O43143;B4E0S6 O43143 266 277 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 4.7687E-13 131.44 5 2.1068 2.2827 50.922 3 Plateau 2.1068 2.2827 50.922 3 0 Plateau NaN NaN NaN 0 0 Median 75397000 25199000 50198000 75397000 25199000 50198000 0 0 0 13109 1379 13468;13469 34586;34587;34588;34589;34590 54011;54012;54013;54014;54015;54016;54017;54018 54012 1048 8 TLATLSENNMEAK AEWQPGETLRGTAERTLATLSENNMEAKFL ERTLATLSENNMEAKFLGNAPCGHYTFKFP R T L A K F 2 0 2 0 0 0 2 0 0 0 2 1 1 0 0 1 2 0 0 0 0 0 13 0 1420.6868 Q9H2W6 Q9H2W6 191 203 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 2 0.023123 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13110 2027 13470 34591 54019 54019 1865 1 TLATTLAPR GSASQANIRLTSLKKTLATTLAPRVLLPAI LTSLKKTLATTLAPRVLLPAIKKTYKQIEK K T L P R V 2 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 3 0 0 0 0 0 9 0 942.54983 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1812 1820 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0015025 84.568 1 0.9083 1.0387 NaN 1 Median 0.9083 1.0387 NaN 1 0 Median NaN NaN NaN 0 0 Median 88097000 47501000 40596000 88097000 47501000 40596000 0 0 0 13111 897 13471 34592 54020 54020 1 TLAVSGLGVVGR STECTLILTEGDSAKTLAVSGLGVVGRDKY SAKTLAVSGLGVVGRDKYGVFPLRGKILNV K T L G R D 1 1 0 0 0 0 0 3 0 0 2 0 0 0 0 1 1 0 0 3 0 0 12 0 1127.6663 P11388 P11388 467 478 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.6095E-37 175.88 4 2 0.96375 0.98387 12.04 4 Median 0.74375 0.88383 2.5691 2 0 Median 1.2457 1.0865 1.4391 2 0 Median 5239200000 2887900000 2351400000 4514700000 2569100000 1945600000 724590000 318800000 405790000 13112 1471 13472 34593;34594;34595;34596;34597;34598 54021;54022;54023;54024;54025;54026;54027;54028;54029;54030;54031;54032;54033;54034;54035;54036;54037;54038;54039;54040;54041;54042;54043;54044 54024 24 TLCGTPNYIAPEVLSK FGLATKVEYDGERKKTLCGTPNYIAPEVLS LCGTPNYIAPEVLSKKGHSFEVDVWSIGCI K T L S K K 1 0 1 0 1 0 1 1 0 1 2 1 0 0 2 1 2 0 1 1 0 0 16 0 1761.8971 P53350;B2R841;B4E083;Q59GD0 P53350 210 225 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 0.011538 44.616 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13113 1604 13473 34599 54045 54045 1 TLCLSTPSSSTVK NLDLGPTAPSLEKEKTLCLSTPSSSTVKHS EKTLCLSTPSSSTVKHSTSSIGSMLAQADK K T L V K H 0 0 0 0 1 0 0 0 0 0 2 1 0 0 1 4 3 0 0 1 0 0 13 0 1379.6966 Q03164;E9PR05;Q9HB80 Q03164 988 1000 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.0059861 46.706 1 0.92329 0.96604 NaN 1 Median 0.92329 0.96604 NaN 1 0 Median NaN NaN NaN 0 0 Median 12066000 5039100 7027300 12066000 5039100 7027300 0 0 0 13114 1680 13474 34600 54046 54046 1 TLCPLCFSILK SSPQAAVPYKKDVGKTLCPLCFSILKGPIS DVGKTLCPLCFSILKGPISDALAHHLRERH K T L L K G 0 0 0 0 2 0 0 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 11 0 1350.704 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 622 632 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.0083203 60.518 1 1.6155 1.3251 NaN 1 Median NaN NaN NaN 0 0 Median 1.6155 1.3251 NaN 1 0 Median 5111000 1884000 3227000 0 0 0 5111000 1884000 3227000 13115 878 13475 34601 54047;54048 54048 2 TLDAQFENDER TIYICQFLTRIAAGKTLDAQFENDERITPL AAGKTLDAQFENDERITPLESALMIWGSIE K T L E R I 1 1 1 2 0 1 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 11 0 1336.5895 A0A024R7X2;A0A024R7X1;P54274;E7EWM7;A8K914;Q5QGN5 A0A024R7X2 173 183 TERF1 Telomeric repeat-binding factor 1 yes no 2 0.0063655 54.539 2 1.5153 1.339 4.2865 2 Median NaN NaN NaN 0 0 Median 1.5153 1.339 4.2865 2 0 Median 4310000 1905100 2404800 0 0 0 4310000 1905100 2404800 13116 236 13476 34602;34603 54049;54050 54050 2 TLDELGIHLTK ILAQVVGDVDTSLPRTLDELGIHLTKEELK SLPRTLDELGIHLTKEELKLNIRPLLRLVC R T L T K E 0 0 0 1 0 0 1 1 1 1 3 1 0 0 0 0 2 0 0 0 0 0 11 0 1238.6871 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 346 356 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2;3 0.012313 56.202 2 0.86943 0.92706 NaN 1 Median 0.86943 0.92706 NaN 1 0 Median NaN NaN NaN 0 0 Median 30884000 21673000 9210600 30884000 21673000 9210600 0 0 0 13117 794 13477 34604;34605 54051;54052;54053 54052 3 TLDELSQGTTTVK VSARDLFRAQLISRKTLDELSQGTTTVKEV RKTLDELSQGTTTVKEVAEMDSVKRSLEGG K T L V K E 0 0 0 1 0 1 1 1 0 0 2 1 0 0 0 1 4 0 0 1 0 0 13 0 1391.7144 A0A075B730;A0A087X1U6;P58107 A0A075B730 1518 1530 EPPK1 Epiplakin no no 2 4.326E-06 102.52 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23998000 0 23998000 23998000 0 23998000 0 0 0 13118 397;1622 13478 34606;34607 54054;54055;54056;54057 54054 4 TLDLPIYVTR HIKYAVTTGDHGIIRTLDLPIYVTRVKGNN HGIIRTLDLPIYVTRVKGNNVYCLDRECRP R T L T R V 0 1 0 1 0 0 0 0 0 1 2 0 0 0 1 0 2 0 1 1 0 0 10 0 1189.6707 P53621 P53621 563 572 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.010458 53.327 2 2 0.96671 0.9165 40.819 4 Median 1.2623 1.3446 23.207 2 0 Median 0.81467 0.69326 8.4809 2 0 Median 61985000 27666000 34320000 56049000 24528000 31521000 5936500 3137900 2798500 13119 1607 13479 34608;34609;34610;34611 54058;54059;54060;54061;54062;54063 54058 6 TLDQISDADNIPGLLVLK LIKLSDYDSSEEAIRTLDQISDADNIPGLL QISDADNIPGLLVLKSLAYRNKGSFDEAAK R T L L K S 1 0 1 3 0 1 0 1 0 2 4 1 0 0 1 1 1 0 0 1 0 0 18 0 1924.0517 Q6PGP7;D6RCE2 Q6PGP7 375 392 TTC37 Tetratricopeptide repeat protein 37 yes no 2 0.013455 40.377 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2665700 0 2665700 2665700 0 2665700 0 0 0 13120 1855 13480 34612 54064 54064 1 TLDSWRDEFLIQASPR CCVLVFDVTAPNTFKTLDSWRDEFLIQASP LDSWRDEFLIQASPRDPENFPFVVLGNKID K T L P R D 1 2 0 2 0 1 1 0 0 1 2 0 0 1 1 2 1 1 0 0 0 0 16 1 1932.9694 A0A158RFU6;P51149;C9J592;B4DPH9 A0A158RFU6 98 113 RAB7A Ras-related protein Rab-7a yes no 3 0.0004198 51.193 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13121 628 13481 34613 54065 54065 1 TLDVVLEEHLK QFLPLIRLLESKYPRTLDVVLEEHLKEIAD KYPRTLDVVLEEHLKEIADLKKQELFHQFV R T L L K E 0 0 0 1 0 0 2 0 1 0 3 1 0 0 0 0 1 0 0 2 0 0 11 0 1294.7133 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 439 449 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2;3 0.00030075 87.913 3 2 0.84493 0.94911 8.7126 3 Median 0.84493 0.94911 8.7126 3 0 Median NaN NaN NaN 0 0 Median 172870000 83725000 89148000 172870000 83725000 89148000 0 0 0 13122 897 13482 34614;34615;34616;34617;34618 54066;54067;54068;54069;54070;54071;54072 54069 6 TLEEAVGNIVK DEFEKEETFTLSTIKTLEEAVGNIVKFLGM STIKTLEEAVGNIVKFLGMHPCERSDKVPD K T L V K F 1 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1171.6449 Q9Y678;B3KW21;Q8WUI6;H0Y8X7 Q9Y678 796 806 COPG1;COPG Coatomer subunit gamma-1 yes no 2 0.00016522 94.309 3 2.1442 2.178 NaN 1 Median 2.1442 2.178 NaN 1 0 Median NaN NaN NaN 0 0 Median 21458000 3841900 17616000 21458000 3841900 17616000 0 0 0 13123 2151 13483 34619;34620;34621 54073;54074;54075;54076;54077 54075 5 TLEEDEEELFK PQFEPIVSLPEQEIKTLEEDEEELFKMRAK QEIKTLEEDEEELFKMRAKLFRFASENDLP K T L F K M 0 0 0 1 0 0 5 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 11 0 1380.6297 A0A140VK94;F6WQW2;P43487;C9JJ34;C9JDM3;B7Z6U1;B4DE76 A0A140VK94 40 50 RANBP1 Ran-specific GTPase-activating protein yes no 2 6.8436E-08 114.5 2 1 3.6551 4.1068 0.22106 2 Median 3.6551 4.1068 0.22106 2 0 Median NaN NaN NaN 0 0 Median 127760000 25407000 102350000 124300000 25407000 98898000 3453600 0 3453600 13124 621 13484 34622;34623;34624 54078;54079;54080;54081;54082 54078 5 TLEEDVDDRAPSK GLSEKIFAKPEEQRKTLEEDVDDRAPSKKG RKTLEEDVDDRAPSKKGKKRKAQREEEQEH K T L S K K 1 1 0 3 0 0 2 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 13 1 1473.6947 Q5T0F3;Q13823 Q5T0F3 642 654 GNL2 Nucleolar GTP-binding protein 2 yes no 2;3 2.3733E-05 99.215 2 1 0.82745 0.93453 39.357 3 Median 0.61533 0.7017 40.522 2 0 Median 1.3527 1.1197 NaN 1 0 Median 46600000 27433000 19167000 42667000 25731000 16936000 3932900 1701900 2231000 13125 1721 13485 34625;34626;34627 54083;54084;54085;54086;54087 54086 5 TLEEGHDFIQEFPGSPAFAALTSIAQK VPFLGSVPLDPALMRTLEEGHDFIQEFPGS PGSPAFAALTSIAQKILDATPACLP_____ R T L Q K I 4 0 0 1 0 2 3 2 1 2 2 1 0 3 2 2 2 0 0 0 0 0 27 0 2903.4341 Q2YS46;B2RDN3;Q9Y5Y2;H3BQR2;B7Z6P0 Q2YS46 229 255 NUBP1;NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 3 1.6289E-06 38.006 2 1.3196 1.3968 6.0959 2 Median 1.3196 1.3968 6.0959 2 0 Median NaN NaN NaN 0 0 Median 35059000 15308000 19751000 35059000 15308000 19751000 0 0 0 13126 888 13486 34628;34629 54088;54089 54089 2 TLEFAGQDLSAYLLK VQPFHQGRPLPASGKTLEFAGQDLSAYLLK TLEFAGQDLSAYLLKSLFKEDCDRRCLFQL K T L L K S 2 0 0 1 0 1 1 1 0 0 4 1 0 1 0 1 1 0 1 0 0 0 15 0 1667.877 Q9H568 Q9H568 172 186 ACTL8 Actin-like protein 8 yes yes 2 4.9481E-32 149.38 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5984500 5984500 0 5984500 5984500 0 0 0 0 13127 2034 13487 34630 54090;54091;54092 54090 3 TLEFNRR SKNKCHKARRCHMNRTLEFNRRQKKNIWLE ARRCHMNRTLEFNRRQKKNIWLETHIWHAK R T L R R Q 0 2 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 1 934.49846 Q96F88;Q99575 Q96F88 189 195 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 0.027338 41.502 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3930000 3930000 0 3930000 3930000 0 0 0 0 13128 1965 13488 34631 54093 54093 1 TLEGELHDLR NSKEAALSTALSEKRTLEGELHDLRGQVAK LSEKRTLEGELHDLRGQVAKLEAALGEAKK R T L L R G 0 1 0 1 0 0 2 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1181.6041 P02545;W8QEH3;Q5I6Y5;Q3BDU5;Q8N519;Q5TCI8;H0YAB0 P02545 157 166 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 2.9918E-05 83.862 5 1.2119 1.3168 0.16504 2 Median 1.2119 1.3168 0.16504 2 0 Median NaN NaN NaN 0 0 Median 104040000 38992000 65052000 104040000 38992000 65052000 0 0 0 13129 1440 13489 34632;34633;34634;34635;34636 54094;54095;54096;54097;54098;54099;54100 54097 7 TLELQGLINDLQR TILELRSQLQISNNRTLELQGLINDLQRER NRTLELQGLINDLQRERENLRQEIEKFQKQ R T L Q R E 0 1 1 1 0 2 1 1 0 1 4 0 0 0 0 0 1 0 0 0 0 0 13 0 1511.8308 P15924 P15924 1763 1775 DSP Desmoplakin yes yes 2 1.2827E-23 177.44 2 0.35548 0.36042 1.4019 2 Median 0.35548 0.36042 1.4019 2 0 Median NaN NaN NaN 0 0 Median 36379000 25901000 10478000 36379000 25901000 10478000 0 0 0 13130 1486 13490 34637;34638 54101;54102;54103;54104;54105 54101 5 TLESQAVETEK AFFVHDAEIVSSLGKTLESQAVETEKVLDI SLGKTLESQAVETEKVLDIIYQPQAIFRVR K T L E K V 1 0 0 0 0 1 3 0 0 0 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1233.6089 B4E074;Q9NVX2;A0A0A0MRH0;K7ERN7 B4E074 76 86 NLE1 Notchless protein homolog 1 yes no 2 0.00028675 89.047 1 1.7653 1.3933 NaN 1 Median NaN NaN NaN 0 0 Median 1.7653 1.3933 NaN 1 0 Median 5983300 2408000 3575300 0 0 0 5983300 2408000 3575300 13131 1060 13491 34639 54106 54106 1 TLETHIK ILLNCPYCTFNADKKTLETHIKIFHAPNAS CTFNADKKTLETHIKIFHAPNASAPSSSLS K T L I K I 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 840.47052 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 120 126 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.059659 50.632 1 1.6014 1.2693 NaN 1 Median NaN NaN NaN 0 0 Median 1.6014 1.2693 NaN 1 0 Median 4756600 1849500 2907100 0 0 0 4756600 1849500 2907100 13132 878 13492 34640 54107 54107 1 TLETVPLER ______________________________ ______________________________ K T L E R K 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 9 0 1056.5815 P22626;A0A087WUI2 P22626 4 12 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 0.00023824 105.14 2 1 2.491 2.6222 45.883 3 Plateau 2.4851 2.6139 9.1317 2 0 Median 1.3737 1.1901 NaN 1 0 Median 54625000 16599000 38026000 52086000 15763000 36323000 2538600 835520 1703000 13133 1508 13493 34641;34642;34643 54108;54109;54110;54111 54110 4 TLFATEDALEVR EYKMGRTKIFIRFPKTLFATEDALEVRRQS FPKTLFATEDALEVRRQSLATKIQAAWRGF K T L V R R 2 1 0 1 0 0 2 0 0 0 2 0 0 1 0 0 2 0 0 1 0 0 12 0 1363.6983 F5H6E2;B7Z3E5;O00159;B7Z9C0;D3DTH7 F5H6E2 698 709 MYO1C Unconventional myosin-Ic no no 2 6.3616E-12 120.09 2 2 1.3345 1.233 12.014 2 Median 1.1169 1.1326 NaN 1 0 Median 1.5946 1.3423 NaN 1 0 Median 32629000 15203000 17426000 28074000 13198000 14876000 4554600 2005300 2549200 13134 1088;1189 13494 34644;34645;34646;34647 54112;54113;54114;54115;54116;54117;54118 54115 7 TLFGFLGK QVTNVSPSASSEQMRTLFGFLGKIDELRLF ASSEQMRTLFGFLGKIDELRLFPPDDSPLP R T L G K I 0 0 0 0 0 0 0 2 0 0 2 1 0 2 0 0 1 0 0 0 0 0 8 0 881.50109 Q05519;Q05BU6;Q6PJY9;Q6PKC9;Q5T760;Q6PJB9;S4R3C4;B4DWT1;B4DTC1 Q05519 51 58 SRSF11;SFRS11 Serine/arginine-rich splicing factor 11 yes no 2 0.051482 49.358 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3499400 0 3499400 3499400 0 3499400 0 0 0 13135 1684 13495 34648 54119 54119 1 TLFPLIEAK AEVTTKSQIPLSKIKTLFPLIEAKKKDQVT PLSKIKTLFPLIEAKKKDQVTAQEIFQDNH K T L A K K 1 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 1 0 0 0 0 0 9 0 1030.6063 P13010;Q53T09 P13010 535 543 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.0018407 80.165 2 2 0.33203 0.32804 29.755 4 Median 0.36504 0.42328 0.055949 2 0 Median 0.30281 0.25283 0.83318 2 0 Median 577560000 421120000 156440000 484560000 350660000 133900000 93003000 70463000 22540000 13136 1476 13496 34649;34650;34651;34652 54120;54121;54122;54123;54124;54125;54126;54127;54128 54124 9 TLFSNIVLSGGSTLFK VLVFAIQKSDMDLRRTLFSNIVLSGGSTLF LFSNIVLSGGSTLFKGFGDRLLSEVKKLAP R T L F K G 0 0 1 0 0 0 0 2 0 1 3 1 0 2 0 3 2 0 0 1 0 0 16 0 1682.9243 B4DMT4;B4DXP9;R4GMT0;B4DM97;P61163 B4DMT4 219 234 ACTR1A Alpha-centractin yes no 2 3.5212E-18 119.39 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12721000 3156600 9564700 12721000 3156600 9564700 0 0 0 13137 1004 13497 34653;34654;34655 54129;54130;54131 54130 3 TLFVLNVPPYCTEESLSR HGVRQGTKSTWPQKRTLFVLNVPPYCTEES VLNVPPYCTEESLSRLLSTCGLVQSVELQE R T L S R L 0 1 1 0 1 0 2 0 0 0 3 0 0 1 2 2 2 0 1 2 0 0 18 0 2124.0561 Q9Y3A4 Q9Y3A4 60 77 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 8.1372E-12 106.49 2 0.88462 0.92404 NaN 1 Median 0.88462 0.92404 NaN 1 0 Median NaN NaN NaN 0 0 Median 13239000 8149500 5089300 13239000 8149500 5089300 0 0 0 13138 2133 13498 34656;34657 54132;54133;54134 54133 3 TLGDFAAEYAK VTGKGQDGIGSKAEKTLGDFAAEYAKSNRS KAEKTLGDFAAEYAKSNRSTCKGCMEKIEK K T L A K S 3 0 0 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 11 0 1184.5714 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0 A0A024R3T8 109 119 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.2643E-05 107.79 2 2 0.84917 0.82455 15.248 4 Median 0.62429 0.72479 0.35054 2 0 Median 1.1448 0.94359 1.1849 2 0 Median 577420000 357520000 219900000 505820000 324210000 181610000 71603000 33310000 38293000 13139 139 13499 34658;34659;34660;34661 54135;54136;54137;54138;54139;54140;54141;54142;54143;54144;54145;54146;54147 54135 13 TLGDTGFMPPDK ITHLVIRPNGRVALRTLGDTGFMPPDKITR ALRTLGDTGFMPPDKITRS___________ R T L D K I 0 0 0 2 0 0 0 2 0 0 1 1 1 1 2 0 2 0 0 0 0 0 12 0 1277.5962 Q96HS1;F5GXG4 Q96HS1 274 285 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 3.4675E-05 97.456 2 2.403 2.6462 5.8931 2 Median 2.403 2.6462 5.8931 2 0 Median NaN NaN NaN 0 0 Median 92309000 25929000 66380000 92309000 25929000 66380000 0 0 0 13140 1972 13500 34662;34663 54148;54149;54150 54148 1815 3 TLGECGFTSQTAR EQRLYKDDQLLDDGKTLGECGFTSQTARPQ GKTLGECGFTSQTARPQAPATVGLAFRADD K T L A R P 1 1 0 0 1 1 1 2 0 0 1 0 0 1 0 1 3 0 0 0 0 0 13 0 1426.6511 B8ZZU8;I3L0M9;Q15370 B8ZZU8 51 63 TCEB2 Transcription elongation factor B polypeptide 2 yes no 2 0.0041613 62.466 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2353800 0 2353800 2353800 0 2353800 0 0 0 13141 1117 13501 34664;34665 54151;54152 54152 2 TLGECGFTSQTARPQAPATVGLAFR EQRLYKDDQLLDDGKTLGECGFTSQTARPQ TARPQAPATVGLAFRADDTFEALCIEPFSS K T L F R A 4 2 0 0 1 2 1 3 0 0 2 0 0 2 2 1 4 0 0 1 0 0 25 1 2635.3177 B8ZZU8;I3L0M9;Q15370 B8ZZU8 51 75 TCEB2 Transcription elongation factor B polypeptide 2 yes no 3 0.032857 30.249 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13142 1117 13502 34666 54153 54153 1 TLGFNLESGWGSGR DQLKKHGFKLGPAPKTLGFNLESGWGSGRA KTLGFNLESGWGSGRAGPSYSMPVHAAVQM K T L G R A 0 1 1 0 0 0 1 4 0 0 2 0 0 1 0 2 1 1 0 0 0 0 14 0 1479.7106 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;Q05DQ5;Q05DF7;Q05BZ6 Q59GQ7 177 190 HLTF Helicase-like transcription factor yes no 2 0.014936 48.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4144200 4144200 0 4144200 4144200 0 0 0 0 13143 512 13503 34667 54154 54154 1 TLGHNLLVSELYNQLK YQIDAAIVRIMKMRKTLGHNLLVSELYNQL LGHNLLVSELYNQLKFPVKPGDLKKRIESL K T L L K F 0 0 2 0 0 1 1 1 1 0 5 1 0 0 0 1 1 0 1 1 0 0 16 0 1841.0047 Q13619;A0A0A0MR50;B4DKT2 Q13619 709 724 CUL4A Cullin-4A yes no 2;3 4.5411E-09 79.394 2 4 0.90459 0.84083 13.225 5 Median 0.89867 0.94809 6.5569 2 0 Median 0.9736 0.78164 8.925 3 0 Median 123820000 61619000 62197000 83054000 41631000 41423000 40762000 19987000 20775000 13144 1718 13504 34668;34669;34670;34671;34672;34673 54155;54156;54157;54158;54159;54160;54161;54162;54163;54164;54165;54166 54158 12 TLGILGLGR KWERKKFMGTELNGKTLGILGLGRIGREVA TELNGKTLGILGLGRIGREVATRMQSFGMK K T L G R I 0 1 0 0 0 0 0 3 0 1 3 0 0 0 0 0 1 0 0 0 0 0 9 0 898.56 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2 O43175 147 155 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.0028606 73.26 3 2 2.3072 2.1703 39.208 4 Median 2.8441 3.0671 11.724 2 0 Median 1.8469 1.5784 7.8393 2 0 Median 122860000 32345000 90515000 116070000 29781000 86284000 6795300 2564700 4230700 13145 1382 13505 34674;34675;34676;34677;34678 54167;54168;54169;54170;54171;54172;54173;54174 54167 8 TLGTPTQPGSTPR CALSSPSLAFTPPIKTLGTPTQPGSTPRIS IKTLGTPTQPGSTPRISTMRPLATAYKAST K T L P R I 0 1 0 0 0 1 0 2 0 0 1 0 0 0 3 1 4 0 0 0 0 0 13 0 1311.6783 A8K3Z5;Q8NFH5 A8K3Z5 270 282 NUP35 Nucleoporin NUP53 yes no 2 0.0046966 59.542 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13146 729 13506 34679;34680 54175;54176 54176 2 TLGVDLVALATR ECNVRVSRSFPFVSKTLGVDLVALATRVIM VSKTLGVDLVALATRVIMGEEVEPVGLMTG K T L T R V 2 1 0 1 0 0 0 1 0 0 3 0 0 0 0 0 2 0 0 2 0 0 12 0 1227.7187 Q53SY7;F8VPD4;P27708 Q53SY7 1155 1166 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00016719 91.855 2 1 0.71666 0.71136 18.681 3 Median 0.72805 0.72888 3.4399 2 0 Median 0.60914 0.52885 NaN 1 0 Median 27539000 14793000 12745000 25608000 13603000 12005000 1930400 1190000 740380 13147 1259 13507 34681;34682;34683 54177;54178;54179;54180;54181;54182 54177 6 TLGVQRPK TGSSRLHDLYWQAMKTLGVQRPKLEKKDAK LYWQAMKTLGVQRPKLEKKDAKEIPSATQS K T L P K L 0 1 0 0 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 1 897.5396 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1141 1148 MYBBP1A Myb-binding protein 1A yes no 2;3 0.032397 97.071 3 0.79679 0.93754 12.06 3 Plateau 0.79679 0.93754 12.06 3 0 Plateau NaN NaN NaN 0 0 Median 108420000 59930000 48488000 108420000 59930000 48488000 0 0 0 13148 1997 13508 34684;34685;34686 54183;54184;54185;54186 54183 4 TLHCEGTEINSDDEQESK LMTFGIEPFKTKKIKTLHCEGTEINSDDEQ CEGTEINSDDEQESKEVEETATAKNVLKLL K T L S K E 0 0 1 2 1 1 4 1 1 1 1 1 0 0 0 2 2 0 0 0 0 0 18 0 2090.8699 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 664 681 NCAPG Condensin complex subunit 3 no no 2;3 2.3248E-40 125.41 3 2 1.3229 1.1845 3.6563 4 Median 1.1501 1.1759 1.8329 2 0 Median 1.5515 1.2191 4.8707 2 0 Median 42995000 20464000 22531000 34853000 16919000 17934000 8142300 3545400 4596900 13149 1995;1289 13509 34687;34688;34689;34690;34691 54187;54188;54189;54190;54191;54192;54193;54194;54195;54196;54197 54191 11 TLHEVSLQESIR AENKTTTTARLASARTLHEVSLQESIRYAP SARTLHEVSLQESIRYAPGDAVEKWLNDLL R T L I R Y 0 1 0 0 0 1 2 0 1 1 2 0 0 0 0 2 1 0 0 1 0 0 12 0 1410.7467 Q05CW7 Q05CW7 459 470 NAT10 yes yes 2;3 2.3775E-06 101.89 5 3 1.0887 1.0117 12.199 5 Median 0.82083 0.95645 7.9445 2 0 Median 1.3483 1.159 12.982 3 0 Median 577770000 299180000 278590000 490650000 261610000 229050000 87120000 37578000 49542000 13150 1687 13510 34692;34693;34694;34695;34696;34697;34698;34699 54198;54199;54200;54201;54202;54203;54204;54205;54206;54207;54208;54209;54210;54211;54212 54200 15 TLHLQTGNLLNWGR GTDSRAAKALLARARTLHLQTGNLLNWGRL RTLHLQTGNLLNWGRLRKKCPSTHSEELHD R T L G R L 0 1 2 0 0 1 0 2 1 0 4 0 0 0 0 0 2 1 0 0 0 0 14 0 1621.8689 D3DT44;P48507 D3DT44 17 30 GCLM Glutamate--cysteine ligase regulatory subunit yes no 3 0.0045914 48.527 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4761300 0 4761300 4761300 0 4761300 0 0 0 13151 1188 13511 34700 54213 54213 1 TLIDDDNPPVSFVK GLCRIWDTASGQCLKTLIDDDNPPVSFVKF KTLIDDDNPPVSFVKFSPNGKYILAATLDN K T L V K F 0 0 1 3 0 0 0 0 0 1 1 1 0 1 2 1 1 0 0 2 0 0 14 0 1558.7879 P61964 P61964 208 221 WDR5 WD repeat-containing protein 5 yes yes 2 8.4016E-05 89.9 2 2 1.7605 1.4509 33.145 3 Median 0.84189 0.83394 NaN 1 0 Median 1.8313 1.4792 2.7346 2 0 Median 74294000 25324000 48970000 45049000 14126000 30923000 29245000 11198000 18047000 13152 1630 13512 34701;34702;34703;34704 54214;54215;54216;54217;54218;54219;54220 54215 7 TLIEAGLPQK EPMDTSSVTHTEHYKTLIEAGLPQKVAERL TEHYKTLIEAGLPQKVAERLDEIFQTGLVA K T L Q K V 1 0 0 0 0 1 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 0 1068.6179 B2R7W4;O43390;B4DMB1 B2R7W4 32 41 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 0.00096714 78.334 1 1.7273 1.7589 NaN 1 Median 1.7273 1.7589 NaN 1 0 Median NaN NaN NaN 0 0 Median 16971000 6241500 10730000 16971000 6241500 10730000 0 0 0 13153 855 13513 34705 54221 54221 1 TLIEELK KCLENRVAVLENQNKTLIEELKALKDLYCH AVLENQNKTLIEELKALKDLYCHKSD____ K T L L K A 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 7 0 844.49058 Q53X93;Q5U0J5;P16220;Q53RU9;E9PAR2;Q59FC7;G5E998;B2R8K4;F1JVV6;F1JVV5;P18846 Q53X93 310 316 CREB1;CREM;EWSR1/ATF1 fusion;ATF1 Cyclic AMP-responsive element-binding protein 1;Cyclic AMP-dependent transcription factor ATF-1 yes no 2 0.030326 68.915 2 0.58378 0.63208 0.91163 2 Median 0.58378 0.63208 0.91163 2 0 Median NaN NaN NaN 0 0 Median 81915000 47575000 34340000 81915000 47575000 34340000 0 0 0 13154 1488 13514 34706;34707 54222;54223 54222 2 TLITFAGMIPYR RVIEDRDSQLRSQARTLITFAGMIPYRTSG QARTLITFAGMIPYRTSGDTNARLVQMEVL R T L Y R T 1 1 0 0 0 0 0 1 0 2 1 0 1 1 1 0 2 0 1 0 0 0 12 0 1381.7428 Q8N1F7;A8K897;H3BV15 Q8N1F7 791 802 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0028212 62.463 2 2.1951 2.2504 NaN 1 Median 2.1951 2.2504 NaN 1 0 Median NaN NaN NaN 0 0 Median 6540800 3084900 3455900 6540800 3084900 3455900 0 0 0 13155 1904 13515 34708;34709 54224;54225 54225 1743 2 TLKPEGNILR DIDVQLSSELTDSLRTLKPEGNILRDRFKS TDSLRTLKPEGNILRDRFKSFQRRNMIEPR R T L L R D 0 1 1 0 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 1 1139.6663 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4DVK1;M0QZ34;M0QZU5;M0QYZ9;Q9P0B0 Q7L4X7 426 435 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 3 0.00026739 70.908 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13156 1068 13516 34710 54226 54226 1 TLLADQGEIR EDCFFYSLVFDPVQKTLLADQGEIRVGCKY DPVQKTLLADQGEIRVGCKYQAEIPDRLVE K T L I R V 1 1 0 1 0 1 1 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1114.5982 A0A024R534;O94776 A0A024R534 139 148 MTA2 Metastasis-associated protein MTA2 yes no 2 0.00038137 88.136 2 2 1.1321 1.0916 29.265 4 Median 0.74987 0.85069 4.2204 2 0 Median 1.7077 1.4065 4.813 2 0 Median 233590000 124730000 108860000 202650000 113080000 89574000 30941000 11656000 19285000 13157 168 13517 34711;34712;34713;34714 54227;54228;54229;54230;54231;54232;54233;54234;54235 54228 9 TLLAILR REAWASKDATYTSARTLLAILRLSTALARL DATYTSARTLLAILRLSTALARLRMVDVVE R T L L R L 1 1 0 0 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 7 0 798.53272 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;Q9H4N9 B3KUD7 498 504 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.013268 103.28 2 1.2374 1.2754 NaN 1 Median 1.2374 1.2754 NaN 1 0 Median NaN NaN NaN 0 0 Median 24855000 14557000 10298000 24855000 14557000 10298000 0 0 0 13158 560 13518 34715;34716 54236;54237 54236 2 TLLDIDNTR DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF TVGNNKTLLDIDNTRMTLDDFRIKFEMEQN K T L T R M 0 1 1 2 0 0 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1059.556 CON__P35527;P35527 CON__P35527 225 233 KRT9 Keratin, type I cytoskeletal 9 yes no 2 3.223E-07 120.15 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1076600000 1076600000 0 1003500000 1003500000 0 73078000 73078000 0 + 13159 1165 13519 34717;34718;34719;34720 54238;54239;54240;54241;54242 54238 5 TLLDSLR PGALFVQSHLEDLKKTLLDSLRSTSSPAKR SHLEDLKKTLLDSLRSTSSPAKRPRLKCLL K T L L R S 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 7 0 816.47052 B3KMR5;Q5JTH9;B3KY97 B3KMR5 820 826 RRP12 RRP12-like protein yes no 2 0.0045875 132.96 2 1 1.1798 1.2167 17.906 3 Median 1.2412 1.3177 11.284 2 0 Median 1.1608 0.99826 NaN 1 0 Median 80716000 33736000 46979000 73018000 30742000 42276000 7697600 2993800 4703800 13160 907 13520 34721;34722;34723 54243;54244;54245 54244 3 TLLEEEYFR LIPGSQFWDASKTLRTLLEEEYFREKLSDG ASKTLRTLLEEEYFREKLSDGIGVMLPQVL R T L F R E 0 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 9 0 1198.587 P52701;A0A087WWJ1;Q1L838 P52701 636 644 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.024384 48.283 1 0.94557 0.97636 NaN 1 Median 0.94557 0.97636 NaN 1 0 Median NaN NaN NaN 0 0 Median 20060000 8962500 11097000 20060000 8962500 11097000 0 0 0 13161 1601 13521 34724 54246 54246 1 TLLEGEESR MNTKLALDLEIATYRTLLEGEESRMSGECA EIATYRTLLEGEESRMSGECAPNVSVSVST R T L S R M 0 1 0 0 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1032.5088 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 484 492 KRT1 Keratin, type II cytoskeletal 1 no no 2 0.0034102 78.516 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2102700000 2102700000 0 1955900000 1955900000 0 146870000 146870000 0 + 13162 1308;1309 13522 34725;34726;34727;34728 54247;54248;54249;54250;54251;54252 54249 6 TLLEGSGLESIISIIHSSLAEPR CDGKVSVHVIEGDHRTLLEGSGLESIISII ESIISIIHSSLAEPRVSVREG_________ R T L P R V 1 1 0 0 0 0 3 2 1 4 4 0 0 0 1 5 1 0 0 0 0 0 23 0 2421.3115 A0A0U1RQF0;P49327 A0A0U1RQF0 2481 2503 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 3.4349E-13 83.245 2 1.8108 1.8159 10.174 2 Median 1.8108 1.8159 10.174 2 0 Median NaN NaN NaN 0 0 Median 35116000 13678000 21438000 35116000 13678000 21438000 0 0 0 13163 587 13523 34729;34730 54253;54254 54253 0 TLLENTAITIGR LHQLVEIINRPNTPKTLLENTAITIGRLGY TPKTLLENTAITIGRLGYVCPQEVAPMLQQ K T L G R L 1 1 1 0 0 0 1 1 0 2 2 0 0 0 0 0 3 0 0 0 0 0 12 0 1300.7351 A0A024RAM0;Q92973;S4R398;B4DRY5;A0A024R7F7;Q4LE60 A0A024RAM0 774 785 TNPO1;TNPO2;TNPO2 variant protein Transportin-1 yes no 2 0.0002022 79.201 1 1.5314 1.3432 NaN 1 Median NaN NaN NaN 0 0 Median 1.5314 1.3432 NaN 1 0 Median 2522400 1027300 1495100 0 0 0 2522400 1027300 1495100 13164 309 13524 34731 54255;54256 54255 2 TLLFVR SQRAVLLVGLCDSGKTLLFVRLLTGLYRDT LVGLCDSGKTLLFVRLLTGLYRDTQTSITD K T L V R L 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 6 0 747.46431 Q549N5;Q9Y5M8;C9J5Z8 Q549N5 78 83 SRPRB Signal recognition particle receptor subunit beta yes no 2 0.040766 77.906 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13165 1794 13525 34732 54257 54257 1 TLLLCGYPNVGK RQHLSRLPTIDPNTRTLLLCGYPNVGKSSF NTRTLLLCGYPNVGKSSFINKVTRADVDVQ R T L G K S 0 0 1 0 1 0 0 2 0 0 3 1 0 0 1 0 1 0 1 1 0 0 12 0 1333.7064 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747;Q5T3R7 Q8N4P8 168 179 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.00016364 92.062 2 1.5762 1.2948 2.5123 2 Median NaN NaN NaN 0 0 Median 1.5762 1.2948 2.5123 2 0 Median 65244000 25869000 39375000 0 0 0 65244000 25869000 39375000 13166 1183 13526 34733;34734 54258;54259;54260;54261 54259 4 TLLPHDPTADVFVTPAEEK QQVKDVQKLRKKEPKTLLPHDPTADVFVTP HDPTADVFVTPAEEKPIEIQWVKPEPKVDL K T L E K P 2 0 0 2 0 0 2 0 1 0 2 1 0 1 3 0 3 0 0 2 0 0 19 0 2079.0524 Q8TDN6;A0JLQ5 Q8TDN6 296 314 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2;3 1.1871E-07 79.465 4 2 0.95849 1.0994 9.2085 5 Median 0.94551 1.0428 9.8415 4 0 Median 1.3133 1.1159 NaN 1 0 Median 1043500000 515870000 527650000 946190000 490190000 456010000 97321000 25682000 71639000 13167 1934 13527 34735;34736;34737;34738;34739;34740 54262;54263;54264;54265;54266;54267;54268;54269;54270 54270 8 TLLPHDPTADVFVTPAEEKPIEIQWVKPEPK QQVKDVQKLRKKEPKTLLPHDPTADVFVTP EEKPIEIQWVKPEPKVDLKARKKRIYKRQR K T L P K V 2 0 0 2 0 1 4 0 1 2 2 3 0 1 6 0 3 1 0 3 0 0 31 2 3523.8603 Q8TDN6;A0JLQ5 Q8TDN6 296 326 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 4 0.00046056 26.849 2 1.3851 1.3331 6.3586 2 Median NaN NaN NaN 0 0 Median 1.3851 1.3331 6.3586 2 0 Median 57427000 21103000 36324000 0 0 0 57427000 21103000 36324000 13168 1934 13528 34741;34742 54271;54272;54273 54272 3 TLLQGSGCLAGIYLEDTK GKTTVKDLSELGSVRTLLQGSGCLAGIYLE QGSGCLAGIYLEDTKEKVSIYEAMRRGLLR R T L T K E 1 0 0 1 1 1 1 3 0 1 4 1 0 0 0 1 2 0 1 0 0 0 18 0 1937.9768 Q15149;D3DWL0 Q15149 3486 3503 PLEC;PLEC1 Plectin yes no 2 8.3046E-08 91.441 3 1.4423 1.4638 3.7434 2 Median 1.4423 1.4638 3.7434 2 0 Median NaN NaN NaN 0 0 Median 27755000 11413000 16342000 27755000 11413000 16342000 0 0 0 13169 1754 13529 34743;34744;34745 54274;54275;54276;54277;54278 54277 5 TLLQVLGGTILESER FLVYCGDTHGSFVVRTLLQVLGGTILESER TLLQVLGGTILESERARPRGSQSSEAQKTP R T L E R A 0 1 0 0 0 1 2 2 0 1 4 0 0 0 0 1 2 0 0 1 0 0 15 0 1627.9145 Q5HYL4;Q86U38 Q5HYL4 209 223 DKFZp686E1893;NOP9 Nucleolar protein 9 yes no 2 3.5696E-10 116.01 2 0.74713 0.75651 0.47586 2 Median 0.74713 0.75651 0.47586 2 0 Median NaN NaN NaN 0 0 Median 15470000 8201900 7268100 15470000 8201900 7268100 0 0 0 13170 1807 13530 34746;34747 54279;54280;54281 54280 3 TLLVADPR ASKKEIKDILIQYDRTLLVADPRRCESKKF ILIQYDRTLLVADPRRCESKKFGGPGARAR R T L P R R 1 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 8 0 883.51272 P62249;M0R210;A0A087WZ27 P62249 118 125 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 0.012693 67.032 2 1 1.0416 1.207 31.358 3 Median 1.0417 1.2185 1.338 2 0 Median 0.85561 0.70801 NaN 1 0 Median 558170000 277420000 280750000 543350000 269570000 273780000 14822000 7853000 6969000 13171 1636 13531 34748;34749;34750 54282;54283;54284;54285 54282 4 TLLYNPFPPTNESDVIR MFCIIDKSLPLPNDKTLLYNPFPPTNESDV LYNPFPPTNESDVIRRRTAHAFKISKIYKP K T L I R R 0 1 2 1 0 0 1 0 0 1 2 0 0 1 3 1 2 0 1 1 0 0 17 0 1975.0051 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4 Q969X6 618 634 CIRH1A Cirhin yes no 2 6.9444E-07 93.766 2 2 1.0793 1.0605 1.8488 4 Median 0.95798 1.0795 2.48 2 0 Median 1.2217 1.058 0.2949 2 0 Median 232320000 113670000 118650000 146160000 73690000 72467000 86164000 39984000 46180000 13172 1955 13532 34751;34752;34753;34754 54286;54287;54288;54289;54290;54291;54292;54293 54289 8 TLMNTIMQLR TDGSEKDKKGKGGTKTLMNTIMQLRKICNH KGGTKTLMNTIMQLRKICNHPYMFQHIEES K T L L R K 0 1 1 0 0 1 0 0 0 1 2 0 2 0 0 0 2 0 0 0 0 0 10 0 1219.6417 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8;B3KNW7;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 A7E2E1 1034 1043 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.012327 55.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13173 695;1595 13533 34755 54294 54294 539;540 1 TLNDMRQEYEQLIAK VNVEINVAPGKDLTKTLNDMRQEYEQLIAK TLNDMRQEYEQLIAKNRKDIENQYETQITQ K T L A K N 1 1 1 1 0 2 2 0 0 1 2 1 1 0 0 0 1 0 1 0 0 0 15 1 1850.9196 CON__P35527;P35527;K7EQQ3 CON__P35527 322 336 KRT9 Keratin, type I cytoskeletal 9 yes no 3 0.00072217 65.374 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44563000 44563000 0 36049000 36049000 0 8514200 8514200 0 + 13174 1165 13534 34756;34757 54295;54296 54296 884 2 TLNEWSSQINPDLVR CPSTHSEELHDCIQKTLNEWSSQINPDLVR TLNEWSSQINPDLVREFPDVLECTVSHAVE K T L V R E 0 1 2 1 0 1 1 0 0 1 2 0 0 0 1 2 1 1 0 1 0 0 15 0 1770.8901 D3DT44;P48507 D3DT44 50 64 GCLM Glutamate--cysteine ligase regulatory subunit yes no 2 1.0076E-06 93.623 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9429000 0 9429000 9429000 0 9429000 0 0 0 13175 1188 13535 34758;34759 54297;54298 54297 2 TLPADYGDSLAKR IEDAVEHEQKKSSKRTLPADYGDSLAKRGS KRTLPADYGDSLAKRGSCSPWPDAPTAYVN R T L K R G 2 1 0 2 0 0 0 1 0 0 2 1 0 0 1 1 1 0 1 0 0 0 13 1 1405.7201 A8KAN5;A0A024R2L0;Q9NZI7 A8KAN5 295 307 UBP1 Upstream-binding protein 1 yes no 3 0.042344 13.404 1 0.67778 0.82578 NaN 1 Median 0.67778 0.82578 NaN 1 0 Median NaN NaN NaN 0 0 Median 632370000 388310000 244050000 632370000 388310000 244050000 0 0 0 13176 115 13536 34760 54299 54299 1 TLPAHSDPVSAVHFNR ESVRIWDVKTGKCLKTLPAHSDPVSAVHFN LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR K T L N R D 2 1 1 1 0 0 0 0 2 0 1 0 0 1 2 2 1 0 0 2 0 0 16 0 1746.8802 P61964 P61964 166 181 WDR5 WD repeat-containing protein 5 yes yes 3 0.002889 33.947 1 1.3785 1.1603 NaN 1 Median NaN NaN NaN 0 0 Median 1.3785 1.1603 NaN 1 0 Median 4540900 1635100 2905900 0 0 0 4540900 1635100 2905900 13177 1630 13537 34761 54300;54301 54300 2 TLPGSDWTPNAQFITR DLPKLEKRLEEWLGRTLPGSDWTPNAQFIT LPGSDWTPNAQFITRSWLRDGLKPRCITRD R T L T R S 1 1 1 1 0 1 0 1 0 1 1 0 0 1 2 1 3 1 0 0 0 0 16 0 1802.8951 A8K492;P56192;B4DF61;B4E0E9 A8K492 468 483 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.013231 44.511 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13828000 0 13828000 13828000 0 13828000 0 0 0 13178 732 13538 34762;34763 54302;54303 54303 2 TLPLFYGSIVR DGKIYKAGQLVKTIKTLPLFYGSIVRFFLY KTIKTLPLFYGSIVRFFLYGDHDGEVYATG K T L V R F 0 1 0 0 0 0 0 1 0 1 2 0 0 1 1 1 1 0 1 1 0 0 11 0 1264.718 A6NHR9;J3KTL8 A6NHR9 620 630 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0068404 53.683 2 1 0.97185 1.0177 4.9273 3 Median 0.96998 0.99986 2.5002 2 0 Median 1.2487 1.0828 NaN 1 0 Median 23165000 10611000 12553000 21089000 9681900 11407000 2076200 929460 1146700 13179 684 13539 34764;34765;34766 54304;54305;54306;54307 54305 4 TLQDIVYK QVHKTRPLLNIRSDKTLQDIVYKLVPGLFK LNIRSDKTLQDIVYKLVPGLFKNEMKRRRD K T L Y K L 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 8 0 978.5386 Q5T8Z4;R4GMX3;P35226;Q5T8Z6;A0A087X259;J3KT13;Q6IB93;Q5U0M5;A0A024R1V6;P35227 Q5T8Z4 74 81 BMI1;COMMD3-BMI1;PCGF2;COMMD3 Polycomb complex protein BMI-1;Polycomb group RING finger protein 2 yes no 2 0.020224 65.252 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3731200 3731200 0 3731200 3731200 0 0 0 0 13180 1540 13540 34767;34768;34769;34770 54308;54309;54310;54311 54308 4 TLQEQLEK ______________________________ ______________________________ R T L E K A 0 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 987.52368 Q9H307;A8K964;G3V5F0;G3V579 Q9H307 7 14 PNN Pinin yes no 2 0.025358 62.107 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6842600 0 6842600 6842600 0 6842600 0 0 0 13181 2028 13541 34771 54312 54312 1 TLQEQLENGPNTQLAR REHVKEVQQLQGKIRTLQEQLENGPNTQLA LQEQLENGPNTQLARLQQENSILRDALNQA R T L A R L 1 1 2 0 0 3 2 1 0 0 3 0 0 0 1 0 2 0 0 0 0 0 16 0 1810.9173 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 782 797 RRBP1 Ribosome-binding protein 1 yes no 2 0.0001418 83.204 4 1 0.67354 0.623 5.8407 2 Median 0.65862 0.64927 NaN 1 0 Median 0.6888 0.59779 NaN 1 0 Median 15196000 7200900 7995100 13038000 6224300 6813700 2158000 976580 1181400 13182 471 13542 34772;34773;34774;34775;34776 54313;54314;54315;54316;54317 54314 4 TLQEVTQLSQEAQR CFIAGADINMLAACKTLQEVTQLSQEAQRI KTLQEVTQLSQEAQRIVEKLEKSTKPIVAA K T L Q R I 1 1 0 0 0 4 2 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 14 0 1629.8322 E9KL44;P40939;B4DRH6 E9KL44 112 125 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 4.5669E-17 130.44 5 2 1.1416 1.046 41.742 2 Median 0.79243 0.77862 NaN 1 0 Median 1.6447 1.4051 NaN 1 0 Median 21018000 13360000 7657600 13593000 9153100 4439600 7424900 4206900 3218000 13183 1228 13543 34777;34778;34779;34780;34781;34782;34783 54318;54319;54320;54321;54322;54323;54324;54325 54319 8 TLQGHSVIR PSRPGAQGVEPQNLRTLQGHSVIRSATNTT EPQNLRTLQGHSVIRSATNTTLPHMLMSQR R T L I R S 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1009.5669 A0A0U1RRM1;Q8WXI9;B3KSZ4 A0A0U1RRM1 241 249 GATAD2B Transcriptional repressor p66-beta yes no 2;3 0.0040455 70.256 3 0.67967 0.68683 10.674 2 Median 0.67967 0.68683 10.674 2 0 Median NaN NaN NaN 0 0 Median 46415000 29269000 17146000 46415000 29269000 17146000 0 0 0 13184 591 13544 34784;34785;34786 54326;54327;54328;54329 54326 4 TLQLDEDVLCVSYSPNQK DENSTQKRLSVKQTRTLQLDEDVLCVSYSP LDEDVLCVSYSPNQKLLAVSLLDCTVKIFY R T L Q K L 0 0 1 2 1 2 1 0 0 0 3 1 0 0 1 2 1 0 1 2 0 0 18 0 2108.0096 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 545 562 WDR3 WD repeat-containing protein 3 yes no 2 1.4883E-11 101.36 1 2 1.0513 0.85568 3.8017 2 Median NaN NaN NaN 0 0 Median 1.0513 0.85568 3.8017 2 0 Median 43192000 15600000 27592000 8012800 0 8012800 35179000 15600000 19579000 13185 1827 13545 34787;34788;34789 54330;54331;54332;54333;54334;54335;54336;54337 54337 8 TLQLDNNFEVK SSVKLWDLRKLKNFKTLQLDNNFEVKSLIF KNFKTLQLDNNFEVKSLIFDQSGTYLALGG K T L V K S 0 0 2 1 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 11 0 1319.6721 Q9UMS4 Q9UMS4 429 439 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 9.881E-23 163.94 1 2 1.1937 0.97619 27.853 3 Median 1.3628 1.5321 NaN 1 0 Median 1.1719 0.94825 4.1065 2 0 Median 89780000 38808000 50972000 72863000 30822000 42041000 16917000 7986200 8931000 13186 2114 13546 34790;34791;34792 54338;54339;54340;54341;54342;54343 54340 6 TLQQQTFK ______________________________ ______________________________ K T L F K I 0 0 0 0 0 3 0 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 8 0 992.5291 P54727;B4DEA3;Q53F10;Q5W0S5;K7ENJ0;K7ELW1;A8K1J3;A0A024R7G8;P54725 P54727 7 14 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A yes no 2 0.0075008 82.671 2 0.89526 0.7203 2.3181 2 Median NaN NaN NaN 0 0 Median 0.89526 0.7203 2.3181 2 0 Median 9546900 4776000 4770900 0 0 0 9546900 4776000 4770900 13187 1610 13547 34793;34794 54344;54345;54346;54347 54345 4 TLQTISLLGYMK NGINGILADEMGLGKTLQTISLLGYMKHYR LGKTLQTISLLGYMKHYRNIPGPHMVLVPK K T L M K H 0 0 0 0 0 1 0 1 0 1 3 1 1 0 0 1 2 0 1 0 0 0 12 0 1366.753 O60264;B7ZAX9;B4DZC0 O60264 212 223 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 2.4682E-08 113.93 2 4 4.5838 5.6242 30.268 4 Linear 4.6571 5.1177 0.42252 2 0 Median 3.92 3.1517 19.958 2 0 Median 145250000 27693000 117560000 126770000 24547000 102220000 18480000 3145900 15334000 13188 1391 13548;13549 34795;34796;34797;34798;34799;34800 54348;54349;54350;54351;54352;54353;54354 54349 1068 7 TLSADASVNTLPVVVSR ENRLSSLIIGPSKERTLSADASVNTLPVVV SADASVNTLPVVVSREPSVPASCAVSATYE R T L S R E 2 1 1 1 0 0 0 0 0 0 2 0 0 0 1 3 2 0 0 4 0 0 17 0 1727.9418 Q92615;H0Y641;H0Y4V9 Q92615 566 582 LARP4B La-related protein 4B yes no 2 3.9354E-09 98.942 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5327400 0 5327400 5327400 0 5327400 0 0 0 13189 1949 13550 34801 54355 54355 1 TLSDDLDEAAK QMVAAKDVVMEPTMKTLSDDLDEAAKEFQE PTMKTLSDDLDEAAKEFQEKHKKEVGKLKS K T L A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1176.551 Q9H0A0;A0A087WV29 Q9H0A0 932 942 NAT10 N-acetyltransferase 10 yes no 2 0.00013719 95.523 2 2 1.1481 1.1478 6.0877 4 Median 0.9404 1.103 0.38863 2 0 Median 1.4312 1.2192 3.2894 2 0 Median 752430000 368230000 384200000 610610000 309530000 301080000 141830000 58703000 83123000 13190 2023 13551 34802;34803;34804;34805 54356;54357;54358;54359;54360;54361;54362;54363;54364;54365;54366 54360 11 TLSDYNIQK QQRLIFAGKQLEDGRTLSDYNIQKESTLHL QLEDGRTLSDYNIQKESTLHLVLRLRGGAK R T L Q K E 0 0 1 1 0 1 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 9 0 1080.5451 Q5RKT7;B2RDW1;P62979;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;M0R1V7;Q49A90;Q8WYN9;Q9UFQ0;Q96H31;Q66K58;Q59EM9;M0R1M6;M0R2S1 Q5RKT7 55 63 RPS27A;HEL112;UBB;UBC;UBA52;UbC;DKFZp434K0435 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 1;2 2.503E-05 119.41 4 2 0.88198 0.98656 4.8008 5 Median 0.83574 0.99184 6.069 3 0 Median 1.1153 0.97464 1.7192 2 0 Median 9968700000 5147300000 4821400000 9456300000 4907600000 4548700000 512430000 239700000 272720000 13191 891 13552 34806;34807;34808;34809;34810;34811 54367;54368;54369;54370;54371;54372;54373;54374;54375;54376;54377;54378;54379;54380;54381 54375 15 TLSFSSDNIAVLSAAADSIK RTSRITIGGHRSDVRTLSFSSDNIAVLSAA SDNIAVLSAAADSIKIWNRSTLQCIRTMTC R T L I K I 4 0 1 2 0 0 0 0 0 2 2 1 0 1 0 5 1 0 0 1 0 0 20 0 2009.0317 Q5TDG3;Q9UNX4;B3KMW5 Q5TDG3 420 439 WDR3 WD repeat-containing protein 3 yes no 2 1.3541E-31 148.57 2 2 1.2591 1.2261 25.781 4 Median 0.93171 1.0387 0.39014 2 0 Median 1.8547 1.5892 13.621 2 0 Median 311540000 139290000 172250000 116490000 60965000 55526000 195050000 78321000 116720000 13192 1827 13553 34812;34813;34814;34815 54382;54383;54384;54385;54386;54387;54388;54389;54390;54391 54388 10 TLSLALDNPNEEVAEVK SPFLCFGDVLLGASRTLSLALDNPNEEVAE SLALDNPNEEVAEVKISHFPAADLGFSVSQ R T L V K I 2 0 2 1 0 0 3 0 0 0 3 1 0 0 1 1 1 0 0 2 0 0 17 0 1840.9418 Q8IZT6;B3KWI2;Q4G1H2;Q4G1H0;A0A087WV76 Q8IZT6 62 78 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 6.7636E-05 89.013 2 1.0898 1.1196 4.8504 2 Median 1.0898 1.1196 4.8504 2 0 Median NaN NaN NaN 0 0 Median 33912000 16509000 17403000 33912000 16509000 17403000 0 0 0 13193 1902 13554 34816;34817 54392;54393;54394;54395;54396 54394 5 TLSQGESQTSEHELFLDTK LLEMAEMIAEDEEKKTLSQGESQTSEHELF GESQTSEHELFLDTKIFEKDQGSTYSGDLE K T L T K I 0 0 0 1 0 2 3 1 1 0 3 1 0 1 0 3 3 0 0 0 0 0 19 0 2149.0175 Q5VZL5;H7C1I7 Q5VZL5 1062 1080 ZMYM4 Zinc finger MYM-type protein 4 yes no 3 0.00011601 30.21 1 0.88792 0.91764 NaN 1 Median 0.88792 0.91764 NaN 1 0 Median NaN NaN NaN 0 0 Median 14678000 10318000 4359800 14678000 10318000 4359800 0 0 0 13194 1835 13555 34818 54397;54398 54398 2 TLSSPSNRPSGETSVPPPPAVGR SRMSPKAQRPLRGAKTLSSPSNRPSGETSV PSGETSVPPPPAVGRMYPPRSPKSAAPAPI K T L G R M 1 2 1 0 0 0 1 2 0 0 1 0 0 0 6 5 2 0 0 2 0 0 23 1 2289.1713 A0A024QZC0;A0A024QZB7;A0A024QZ91;Q8WWM7 A0A024QZC0 299 321 ATXN2L Ataxin-2-like protein yes no 3 0.004056 41.521 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7937300 0 7937300 7937300 0 7937300 0 0 0 13195 14 13556 34819;34820 54399;54400 54399 2 TLSYLLPAIVHINHQPFLER SGLDMVGVAQTGSGKTLSYLLPAIVHINHQ LPAIVHINHQPFLERGDGPICLVLAPTREL K T L E R G 1 1 1 0 0 1 1 0 2 2 4 0 0 1 2 1 1 0 1 1 0 0 20 0 2360.3005 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;J3QRQ7;J3QRN5 B4DN41 134 153 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 3 8.2565E-07 65.25 1 1 0.90751 0.73229 NaN 1 Median NaN NaN NaN 0 0 Median 0.90751 0.73229 NaN 1 0 Median 13501000 8779100 4721600 2558000 2558000 0 10943000 6221100 4721600 13196 1009 13557 34821;34822 54401;54402 54402 2 TLTAIAVILTNFHDGRPLPIER NVHGGILADDMGLGKTLTAIAVILTNFHDG ILTNFHDGRPLPIERVKKNLLKKEYNVNDD K T L E R V 2 2 1 1 0 0 1 1 1 3 3 0 0 1 2 0 3 0 0 1 0 0 22 1 2446.3696 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;Q05DQ5;Q05DF7;Q05BZ6 Q59GQ7 301 322 HLTF Helicase-like transcription factor yes no 3 0.013521 32.227 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2626500 2626500 0 2626500 2626500 0 0 0 0 13197 512 13558 34823 54403 54403 1 TLTAVHDAILEDLVFPSEIVGK RKSRTKNKQKRPRSRTLTAVHDAILEDLVF AILEDLVFPSEIVGKRIRVKLDGSRLIKVH R T L G K R 2 0 0 2 0 0 2 1 1 2 3 1 0 1 1 1 2 0 0 3 0 0 22 0 2366.2733 P62081;B5MCP9;Q59FS3 P62081 121 142 RPS7 40S ribosomal protein S7 yes no 3 5.4357E-23 123.53 3 2 0.95114 0.9459 17.117 4 Median 0.96944 1.1014 1.3968 2 0 Median 0.92762 0.81911 0.22342 2 0 Median 1164100000 603960000 560100000 265840000 137370000 128470000 898220000 466590000 431620000 13198 1631 13559 34824;34825;34826;34827;34828 54404;54405;54406;54407;54408;54409;54410;54411;54412;54413;54414;54415;54416;54417;54418;54419;54420;54421 54421 18 TLTDEDEADQGGWLAAFWK TPNDLTGEHSCIMLKTLTDEDEADQGGWLA EDEADQGGWLAAFWKDFRRRFLALLSYQFS K T L W K D 3 0 0 3 0 1 2 2 0 0 2 1 0 1 0 0 2 2 0 0 0 0 19 0 2151.9749 Q9H0A0;A0A087WV29 Q9H0A0 751 769 NAT10 N-acetyltransferase 10 yes no 2 2.5576E-41 149.41 3 0.83281 0.9061 NaN 1 Median 0.83281 0.9061 NaN 1 0 Median NaN NaN NaN 0 0 Median 109790000 62982000 46812000 109790000 62982000 46812000 0 0 0 13199 2023 13560 34829;34830;34831 54422;54423;54424;54425;54426;54427;54428 54425 7 TLTELILDAQEHVK KLKWVEISNEVRKFRTLTELILDAQEHVKN RTLTELILDAQEHVKNPYKGKKLKKHPDFP R T L V K N 1 0 0 1 0 1 2 0 1 1 3 1 0 0 0 0 2 0 0 1 0 0 14 0 1608.8723 E9PKP7;P17480;A8K962;B4DNQ1;Q05BZ1;Q9BQR2 E9PKP7 84 97 UBTF Nucleolar transcription factor 1 yes no 2;3 2.3941E-14 142.07 4 4 1.0266 0.98998 20.908 8 Median 0.694 0.78431 8.1907 4 0 Median 1.3783 1.148 2.4523 4 0 Median 502300000 271810000 230480000 335870000 201820000 134050000 166420000 69989000 96432000 13200 1244 13561 34832;34833;34834;34835;34836;34837;34838;34839 54429;54430;54431;54432;54433;54434;54435;54436;54437;54438;54439;54440;54441;54442;54443;54444;54445;54446;54447;54448 54430 20 TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK LALAASWTSRQVGERTLTGTVIDSGDGVTH VIPVAEGYVIGSCIKHIPIAGRDITYFIQQ R T L I K H 1 0 0 2 1 0 1 5 1 4 1 1 0 0 1 2 4 0 1 5 0 0 30 0 3057.5693 A0A024RAI1;P61158;B4DT29;B4DXW1;B4DTI0 A0A024RAI1 162 191 ACTR3 Actin-related protein 3 yes no 3 0.023745 15.434 1 2.4317 1.8915 NaN 1 Median NaN NaN NaN 0 0 Median 2.4317 1.8915 NaN 1 0 Median 3675300 1005400 2669900 0 0 0 3675300 1005400 2669900 13201 304 13562 34840 54449 54449 1 TLTLETDQSTSGCR GADQTGLFWKCLPSRTLTLETDQSTSGCRS RTLTLETDQSTSGCRSSRERIIIMCCANAT R T L C R S 0 1 0 1 1 1 1 1 0 0 2 0 0 0 0 2 4 0 0 0 0 0 14 0 1567.7148 V9HWD1;B3KNK0;Q4W5G0 V9HWD1 190 203 HEL106;TIGD2 Tigger transposable element-derived protein 2 yes no 2 0.0044029 56.225 2 1.2041 1.068 NaN 1 Median NaN NaN NaN 0 0 Median 1.2041 1.068 NaN 1 0 Median 1316400 598080 718320 0 0 0 1316400 598080 718320 13202 914 13563 34841;34842 54450;54451 54451 2 TLTLVDTGIGMTK GKELKIDIIPNPQERTLTLVDTGIGMTKAD ERTLTLVDTGIGMTKADLINNLGTIAKSGT R T L T K A 0 0 0 1 0 0 0 2 0 1 2 1 1 0 0 0 4 0 0 1 0 0 13 0 1348.7272 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;O14942 B4DMA2 83 95 HSP90AB1 Heat shock protein HSP 90-beta yes no 2 0.00031691 68.069 1 2 1.7429 1.3602 15.219 2 Median NaN NaN NaN 0 0 Median 1.7429 1.3602 15.219 2 0 Median 7103000 2290500 4812600 0 0 0 7103000 2290500 4812600 13203 379 13564 34843;34844;34845 54452;54453;54454 54454 3 TLTPDQWAR CLAEELPHIHAFEQKTLTPDQWARERQK__ HAFEQKTLTPDQWARERQK___________ K T L A R E 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 2 1 0 0 0 0 9 0 1086.5458 A0A087WZT3;Q9H3K6 A0A087WZT3 140 148 BOLA2 BolA-like protein 2 yes no 2 0.032349 52.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3002900 0 3002900 3002900 0 3002900 0 0 0 13204 441 13565 34846 54455 54455 1 TLTPISAAYAR SEDEAKVCMVYDLYKTLTPISAAYARARGA DLYKTLTPISAAYARARGADRMSSFGDFVA K T L A R A 3 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 2 0 1 0 0 0 11 0 1162.6346 V9HWH7;B2R7P8;P31939;B4DP06 V9HWH7 295 305 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.021891 52.579 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6791300 0 6791300 6791300 0 6791300 0 0 0 13205 852 13566 34847 54456 54456 1 TLTPISGGQR TRIAASKTIDIREERTLTPISGGQRSSVVP IREERTLTPISGGQRSSVVPSVILKPENIK R T L Q R S 0 1 0 0 0 1 0 2 0 1 1 0 0 0 1 1 2 0 0 0 0 0 10 0 1028.5615 B7Z8H0;Q96F82;Q13415;A8K794 B7Z8H0 335 344 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.037167 37.191 1 1.6992 1.4801 NaN 1 Median NaN NaN NaN 0 0 Median 1.6992 1.4801 NaN 1 0 Median 1504800 497520 1007300 0 0 0 1504800 497520 1007300 13206 1103 13567 34848 54457 54457 1 TLTPLGR RHSQYHVDGSLEKDRTLTPLGREQAELTGL DGSLEKDRTLTPLGREQAELTGLRLASLGL R T L G R E 0 1 0 0 0 0 0 1 0 0 2 0 0 0 1 0 2 0 0 0 0 0 7 0 756.44939 Q96HS1 Q96HS1 119 125 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.03153 66.993 1 1.7703 2.0314 NaN 1 Median 1.7703 2.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median 80384000 28580000 51804000 80384000 28580000 51804000 0 0 0 13207 1972 13568 34849 54458 54458 1 TLVAHYPPVQVLFEK FIGQFSDDRHCSRFRTLVAHYPPVQVLFEK TLVAHYPPVQVLFEKGNLSKETKTILKSSL R T L E K G 1 0 0 0 0 1 1 0 1 0 2 1 0 1 2 0 1 0 1 3 0 0 15 0 1739.961 P52701;A0A087WWJ1;Q1L838 P52701 584 598 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 3 0.0040735 33.842 3 0.77267 0.77919 30.468 2 Median 0.77267 0.77919 30.468 2 0 Median NaN NaN NaN 0 0 Median 26548000 11576000 14972000 26548000 11576000 14972000 0 0 0 13208 1601 13569 34850;34851;34852 54459;54460;54461;54462 54461 4 TLVAVERPLDDIIAQLPPPIK KIYKPLLFMDLLDERTLVAVERPLDDIIAQ RPLDDIIAQLPPPIKKKKFGT_________ R T L I K K 2 1 0 2 0 1 1 0 0 3 3 1 0 0 4 0 1 0 0 2 0 0 21 1 2297.3359 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4;H3BRM8 Q969X6 660 680 CIRH1A Cirhin yes no 3 3.8775E-30 125.09 6 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 165760000 165760000 0 95112000 95112000 0 70652000 70652000 0 13209 1955 13570 34853;34854;34855;34856;34857;34858;34859;34860 54463;54464;54465;54466;54467;54468;54469;54470;54471;54472 54472 10 TLVEDLFADK YGFAIHHAGMTRVDRTLVEDLFADKHIQVL TRVDRTLVEDLFADKHIQVLVSTATLAWGV R T L D K H 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1149.5918 O75643;A4FU77;Q9H8B9 O75643 795 804 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00032788 89.886 2 1 0.92038 1.0366 23.882 3 Median 0.95512 1.0537 2.3063 2 0 Median 0.87346 0.69739 NaN 1 0 Median 107960000 53320000 54637000 101020000 49727000 51292000 6937700 3593400 3344300 13210 1411 13571 34861;34862;34863 54473;54474;54475;54476;54477;54478 54475 6 TLVEHVGMK DKKMKENGREGCFAKTLVEHVGMKNLKSWA EGCFAKTLVEHVGMKNLKSWASVNRGAIIL K T L M K N 0 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 2 0 0 9 0 1012.5376 Q15397;B2RDG4 Q15397 580 588 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.0015827 72.23 2 1.4266 1.5105 NaN 1 Median 1.4266 1.5105 NaN 1 0 Median NaN NaN NaN 0 0 Median 20267000 7915400 12352000 20267000 7915400 12352000 0 0 0 13211 1761 13572 34864;34865 54479;54480 54480 1630 2 TLVLFPNIDAGSK MFELTLDALISFNKRTLVLFPNIDAGSKEM KRTLVLFPNIDAGSKEMVRVMRKKGIEHHP R T L S K E 1 0 1 1 0 0 0 1 0 1 2 1 0 1 1 1 1 0 0 1 0 0 13 0 1373.7555 Q6QNY7;Q6QNY6;Q6QNY5;Q9Y223;B7Z5W2 Q6QNY7 247 259 GNE Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase yes no 2 0.045707 42.001 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13212 1858 13573 34866;34867 54481;54482 54481 2 TLVPGPPGSSR EEWLDILGNGLLRKKTLVPGPPGSSRPVKG LRKKTLVPGPPGSSRPVKGQVVTVHLQTSL K T L S R P 0 1 0 0 0 0 0 2 0 0 1 0 0 0 3 2 1 0 0 1 0 0 11 0 1066.5771 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;M0R2K9;M0R1Q0;M0R1S6;M0R2Q6 B2R8G6 49 59 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8;Peptidyl-prolyl cis-trans isomerase yes no 2 0.01938 44.318 1 0.5951 0.58868 NaN 1 Median 0.5951 0.58868 NaN 1 0 Median NaN NaN NaN 0 0 Median 12439000 7276000 5163500 12439000 7276000 5163500 0 0 0 13213 232 13574 34868 54483 54483 1 TLVQNNCLTRPNIYLIPDIDLK SRMDRNVEMFMNIEKTLVQNNCLTRPNIYL LTRPNIYLIPDIDLKLANKLKDIIKRHQGT K T L L K L 0 1 3 2 1 1 0 0 0 3 4 1 0 0 2 0 2 0 1 1 0 0 22 1 2612.3996 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 158 179 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 3 2.1742E-05 53.342 2 1 0.79545 0.88986 7.8924 2 Median 0.79545 0.88986 7.8924 2 0 Median NaN NaN NaN 0 0 Median 21440000 8663000 12777000 18625000 8663000 9962200 2814800 0 2814800 13214 1798 13575 34869;34870;34871 54484;54485;54486;54487 54485 4 TLVTQNSGVEALIHAILR TGTLSNLTCNNSKNKTLVTQNSGVEALIHA TQNSGVEALIHAILRAGDKDDITEPAVCAL K T L L R A 2 1 1 0 0 1 1 1 1 2 3 0 0 0 0 1 2 0 0 2 0 0 18 0 1934.0949 A0A0S2Z487;A0A024R1X8;P14923 A0A0S2Z487 427 444 JUP Junction plakoglobin yes no 3 4.5372E-10 79.676 2 0.23418 0.23653 34.186 2 Median 0.23418 0.23653 34.186 2 0 Median NaN NaN NaN 0 0 Median 31680000 25780000 5900200 31680000 25780000 5900200 0 0 0 13215 94 13576 34872;34873 54488;54489;54490 54488 2 TLYFFIAGR VRGHFYGHLDFNLDKTLYFFIAGRYEFSNK DFNLDKTLYFFIAGRYEFSNKGADVFLEAL K T L G R Y 1 1 0 0 0 0 0 1 0 1 1 0 0 2 0 0 1 0 1 0 0 0 9 0 1086.5862 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6 P13807 323 331 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.0049428 67.981 1 2 0.46714 0.39885 6.3273 3 Median 0.4464 0.44363 NaN 1 0 Median 0.47152 0.39763 0.43323 2 0 Median 18477000 12797000 5680100 8443500 5979500 2464000 10033000 6817300 3216100 13216 1479 13577 34874;34875;34876 54491;54492;54493;54494;54495 54491 5 TLYGFGG VTAMDVVYALKRQGRTLYGFGG________ YALKRQGRTLYGFGG_______________ R T L G G - 0 0 0 0 0 0 0 3 0 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 713.33844 B2R4R0;P62805;Q0VAS5 B2R4R0 97 103 HIST1H4H;HIST1H4A Histone H4 yes no 1 0.00011123 129.52 5 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15902000000 0 0 13723000000 0 0 2179400000 0 0 13217 828 13578 34877;34878;34879;34880;34881;34882;34883;34884 54496;54497;54498;54499;54500;54501;54502;54503 54496 8 TLYVEEVVPNVIEPSFGLGR FQLTKDMINVKRFQKTLYVEEVVPNVIEPS EVVPNVIEPSFGLGRIMYTVFEHTFHVREG K T L G R I 0 1 1 0 0 0 3 2 0 1 2 0 0 1 2 1 1 0 1 4 0 0 20 0 2217.1681 A0A090N8G0;P41250 A0A090N8G0 510 529 GARS Glycine--tRNA ligase yes no 2 1.1847E-09 98.531 2 2.909 2.9663 0.76818 2 Median 2.909 2.9663 0.76818 2 0 Median NaN NaN NaN 0 0 Median 28129000 7049200 21080000 28129000 7049200 21080000 0 0 0 13218 457 13579 34885;34886 54504;54505 54504 2 TMCGTLDYLPPEMIEGR ADFGWSVHAPSLRRKTMCGTLDYLPPEMIE CGTLDYLPPEMIEGRMHNEKVDLWCIGVLC K T M G R M 0 1 0 1 1 0 2 2 0 1 2 0 2 0 2 0 2 0 1 0 0 0 17 0 1981.8948 B2RC06;J3KT86;A0A0A0MSY3;V9HW16;Q5Y191;Q9UQB9;M0QYK8;Q96GD4;J3QLN8 Q96GD4 232 248 AURKB;AURKC;HEL-S-90 Aurora kinase C;Aurora kinase B no no 2 0.00039432 63.091 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13219 881;1967 13580 34887 54506 54506 694;695 1 TMLELINQLDGFDPR ARFDDGAGGDNEVQRTMLELINQLDGFDPR TMLELINQLDGFDPRGNIKVLMATNRPDTL R T M P R G 0 1 1 2 0 1 1 1 0 1 3 0 1 1 1 0 1 0 0 0 0 0 15 0 1760.8767 A0A140VK70;P35998;Q75L23 A0A140VK70 298 312 PSMC2 26S protease regulatory subunit 7 yes no 2 9.5242E-06 86.911 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6758100 0 6758100 6758100 0 6758100 0 0 0 13220 620 13581 34888 54507 54507 479 1 TMLELLNQLDGFQPNTQVK KRFDSEKAGDREVQRTMLELLNQLDGFQPN LLNQLDGFQPNTQVKVIAATNRVDILDPAL R T M V K V 0 0 2 1 0 3 1 1 0 0 4 1 1 1 1 0 2 0 0 1 0 0 19 0 2188.1198 E9PM69;R4GNH3;A0A140VK42;P17980;E9PKD5 E9PM69 267 285 PSMC3 26S protease regulatory subunit 6A yes no 2 0.00012283 55.314 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12239000 0 12239000 12239000 0 12239000 0 0 0 13221 617 13582 34889;34890 54508;54509;54510 54509 469 3 TMLYTPQEMK HGIPLDLLDRVMTIRTMLYTPQEMKQIIKI VMTIRTMLYTPQEMKQIIKIRAQTEGINIS R T M M K Q 0 0 0 0 0 1 1 0 0 0 1 1 2 0 1 0 2 0 1 0 0 0 10 0 1240.5832 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4G5;J3QLR1 B5BUB1 363 372 RUVBL1 RuvB-like 1 yes no 2 0.0031557 65.535 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13222 1076 13583 34891 54511 54511 828;829 1 TMTDVVGNPEEER LSTASQQEIATLDNKTMTDVVGNPEEERRA NKTMTDVVGNPEEERRAEFYFQPWAQEAVC K T M E R R 0 1 1 1 0 0 3 1 0 0 0 0 1 0 1 0 2 0 0 2 0 0 13 0 1475.6562 A0A024R137;A0A024R102;Q96GM5;A8K9I5;F8VRQ4;H0YHV1 A0A024R137 548 560 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 2.7767E-06 105.46 2 0.84284 0.83534 NaN 1 Median 0.84284 0.83534 NaN 1 0 Median NaN NaN NaN 0 0 Median 12114000 6875200 5238900 12114000 6875200 5238900 0 0 0 13223 65 13584 34892;34893 54512;54513;54514 54514 37 3 TMTELEIDMNQR SHFGIDMLKMQKTDKTMTELEIDMNQRIGE TDKTMTELEIDMNQRIGEWELIQESGVPLK K T M Q R I 0 1 1 1 0 1 2 0 0 1 1 0 2 0 0 0 2 0 0 0 0 0 12 0 1479.6698 A0A140VJZ1;P45974 A0A140VJZ1 292 303 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 3.5663E-05 93.096 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8381800 0 8381800 8381800 0 8381800 0 0 0 13224 613 13585 34894;34895 54515;54516 54515 463;464 2 TMVIIEMTK DISLLFIPQIMKLHKTMVIIEMTKANGKYW IMKLHKTMVIIEMTKANGKYWPIDNFDELD K T M T K A 0 0 0 0 0 0 1 0 0 2 0 1 2 0 0 0 2 0 0 1 0 0 9 0 1064.561 A0A140T8X2;Q6ZTR5 A0A140T8X2 2840 2848 CXorf22 Uncharacterized protein CXorf22 yes no 2 0.0019577 70.268 1 0.04734 0.040425 NaN 1 Median NaN NaN NaN 0 0 Median 0.04734 0.040425 NaN 1 0 Median 65787000 62770000 3016800 0 0 0 65787000 62770000 3016800 13225 596 13586 34896 54517 54517 456;457 1 TMYPAPVTSSVYLSR INLFFTELKEEDVTKTMYPAPVTSSVYLSR TMYPAPVTSSVYLSRDPDGNKIDLVCDAMR K T M S R D 1 1 0 0 0 0 0 0 0 0 1 0 1 0 2 3 2 0 2 2 0 0 15 0 1670.8338 Q8N516;Q4LE38;O95163;F5H2T0;B3KXE7;B4E3I9;Q68DI5 Q8N516 795 809 IKBKAP;IKBKAP variant protein;DKFZp781H1425 Elongator complex protein 1 yes no 2 0.0054514 45.915 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13226 1419 13587 34897 54518 54518 1110 1 TNAENEFVTIK VEDYRNKYEDEINKRTNAENEFVTIKKDVD INKRTNAENEFVTIKKDVDGAYMTKVDLQA R T N I K K 1 0 2 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 11 0 1264.6299 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 278 288 KRT1 Keratin, type II cytoskeletal 1 no no 2 2.5701E-52 191.4 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1053300000 1053300000 0 824560000 824560000 0 228700000 228700000 0 + 13227 1308;1309 13588 34898;34899;34900;34901 54519;54520;54521;54522;54523;54524;54525 54520 7 TNAENEFVTIKK VEDYRNKYEDEINKRTNAENEFVTIKKDVD NKRTNAENEFVTIKKDVDGAYMTKVDLQAK R T N K K D 1 0 2 0 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 12 1 1392.7249 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 278 289 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.3445E-09 137.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10277000 10277000 0 10277000 10277000 0 0 0 0 + 13228 1308;1309 13589 34902 54526 54526 1 TNAFLVATSAPQAVLYNDR LYVAAAMHDYDHPGRTNAFLVATSAPQAVL LVATSAPQAVLYNDRSVLENHHAAAAWNLF R T N D R S 4 1 2 1 0 1 0 0 0 0 2 0 0 1 1 1 2 0 1 2 0 0 19 0 2050.0484 Q14432 Q14432 844 862 PDE3A cGMP-inhibited 3,5-cyclic phosphodiesterase A yes yes 2 0.0026158 47.532 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3983400 0 3983400 3983400 0 3983400 0 0 0 13229 1732 13590 34903 54527 54527 1 TNCCDQCGAYIYTK SDSCFSKFRANKGLKTNCCDQCGAYIYTKT KTNCCDQCGAYIYTKTGSPGPELLFHEGQQ K T N T K T 1 0 1 1 3 1 0 1 0 1 0 1 0 0 0 0 2 0 2 0 0 0 14 0 1752.6906 A6NHB5;Q14202;A6NHN7;A8K3Z7;A6NL54 A6NHB5 450 463 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 5.8055E-05 91.858 1 0.77125 0.80273 NaN 1 Median 0.77125 0.80273 NaN 1 0 Median NaN NaN NaN 0 0 Median 11092000 4528400 6563400 11092000 4528400 6563400 0 0 0 13230 681 13591 34904 54528;54529 54528 2 TNCNVAVINVGAPAAGMNAAVR YKRLAIKLPDDQIPKTNCNVAVINVGAPAA INVGAPAAGMNAAVRSAVRVGIADGHRMLA K T N V R S 6 1 4 0 1 0 0 2 0 1 0 0 1 0 1 0 1 0 0 4 0 0 22 0 2169.0783 Q01813;Q8WTZ9;B1APP6 Q01813 409 430 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 4.6262E-19 101.43 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13977000 0 13977000 13977000 0 13977000 0 0 0 13231 1677 13592 34905;34906 54530;54531;54532 54532 1478 3 TNEGVIEFR RQAGEVTYADAHKERTNEGVIEFRSYSDMK DAHKERTNEGVIEFRSYSDMKRALDKLDGT R T N F R S 0 1 1 0 0 0 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 9 0 1063.5298 V9HVZ0;A8K588;Q13247;Q59GY3 V9HVZ0 146 154 HEL-S-91;SRSF6 Serine/arginine-rich splicing factor 6 yes no 2 9.4291E-25 176.43 2 1.2642 1.4116 3.1665 2 Median 1.2642 1.4116 3.1665 2 0 Median NaN NaN NaN 0 0 Median 142200000 58404000 83794000 142200000 58404000 83794000 0 0 0 13232 748 13593 34907;34908 54533;54534;54535;54536 54536 4 TNFYAEQGGQASDR ASVGKGQRCGLLLDRTNFYAEQGGQASDRG RTNFYAEQGGQASDRGYLVRAGQEDVLFPV R T N D R G 2 1 1 1 0 2 1 2 0 0 0 0 0 1 0 1 1 0 1 0 0 0 14 0 1542.6699 Q5JTZ9 Q5JTZ9 562 575 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 2 0.017671 45.257 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13233 1809 13594 34909 54537 54537 1 TNGKEPELLEPIPYEFMA LKRQPAPPREAHFVRTNGKEPELLEPIPYE KEPELLEPIPYEFMA_______________ R T N M A - 1 0 1 0 0 0 4 1 0 1 2 1 1 1 3 0 1 0 1 0 0 0 18 1 2077.0078 Q6IAX2;P46778;Q59GK9 Q6IAX2 143 160 RPL21 60S ribosomal protein L21 yes no 2 2.3971E-05 67.456 2 1 1.3387 1.3798 47.808 3 Plateau 1.3015 1.3377 4.3812 2 0 Median 0.72904 0.58546 NaN 1 0 Median 75982000 34434000 41547000 61113000 25517000 35596000 14869000 8917100 5951700 13234 1571 13595 34910;34911;34912 54538;54539;54540 54538 1350 3 TNHIETLGK YDILMEKLSVMLSTRTNHIETLGKLREELG VMLSTRTNHIETLGKLREELGLCERTFKRL R T N G K L 0 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 2 0 0 0 0 0 9 0 1011.5349 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 270 278 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 2.4814E-17 166.34 2 2 1.1653 1.0901 25.262 2 Median 0.83112 0.91179 NaN 1 0 Median 1.6339 1.3033 NaN 1 0 Median 55439000 24058000 31381000 50692000 23127000 27565000 4746700 930920 3815800 13235 1699 13596 34913;34914;34915;34916 54541;54542;54543;54544 54542 4 TNHIGHTGYLNTVTVSPDGSLCASGGK DKLVKVWNLANCKLKTNHIGHTGYLNTVTV VTVSPDGSLCASGGKDGQAMLWDLNEGKHL K T N G K D 1 0 2 1 1 0 0 5 2 1 2 1 0 0 1 3 4 0 1 2 0 0 27 0 2742.3031 E9KL35;P63244;J3KPE3;D6RAC2;H0Y8W2;D6RHH4;D6R9Z1;H0YAM7;D6R9L0;D6REE5;D6RFX4;B4DVD2;H0Y8R5 E9KL35 186 212 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 4 3.4248E-16 73.865 1 1 1.7698 1.5867 14.705 2 Median 1.703 1.7605 NaN 1 0 Median 1.8392 1.43 NaN 1 0 Median 36627000 15332000 21295000 32978000 13950000 19028000 3649100 1381900 2267300 13236 1227 13597 34917;34918 54545;54546;54547;54548 54546 4 TNHIYVSSDDIK EWRVRAISAANLHLRTNHIYVSSDDIKETG HLRTNHIYVSSDDIKETGYTYILPKNVLKK R T N I K E 0 0 1 2 0 0 0 0 1 2 0 1 0 0 0 2 1 0 1 1 0 0 12 0 1390.6729 Q6P2Q9;B4DK16 Q6P2Q9 2087 2098 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 1.6662E-06 111.94 3 2 0.90783 0.85115 24.135 5 Median 0.90783 0.97102 17.326 3 0 Median 0.88022 0.69315 11.915 2 0 Median 144550000 74502000 70046000 138170000 70829000 67343000 6376900 3673000 2703900 13237 1854 13598 34919;34920;34921;34922;34923 54549;54550;54551;54552;54553;54554 54549 6 TNIDESAMPPPPPQGVK EEPSRLQESVMEASRTNIDESAMPPPPPQG IDESAMPPPPPQGVKRKAGQIDPEPVMPPQ R T N V K R 1 0 1 1 0 1 1 1 0 1 0 1 1 0 5 1 1 0 0 1 0 0 17 0 1776.8716 A0A024R9J0;O60216;E5RFZ5 A0A024R9J0 461 477 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 2.5508E-05 77.185 3 0.8467 0.87948 6.4581 2 Median 0.8467 0.87948 6.4581 2 0 Median NaN NaN NaN 0 0 Median 23728000 12410000 11318000 23728000 12410000 11318000 0 0 0 13238 280 13599 34924;34925;34926 54555;54556;54557;54558 54556 212 3 TNIIPVLEDAR SHRAGRDLVNVAKKRTNIIPVLEDARHPLK AKKRTNIIPVLEDARHPLKYRMLIGMVDVI R T N A R H 1 1 1 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1239.6823 A6NHQ2 A6NHQ2 220 230 FBLL1 rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 yes yes 2 0.00026131 90.149 2 2 0.83096 0.8935 6.3132 4 Linear 0.7555 0.88975 1.136 2 0 Median 0.91744 0.79806 0.094664 2 0 Median 1584300000 893310000 690980000 1269100000 729310000 539770000 315220000 164000000 151220000 13239 683 13600 34927;34928;34929;34930 54559;54560;54561;54562;54563;54564;54565;54566;54567;54568;54569;54570;54571 54565 13 TNILNSEQVIVEVLPNQPVK KVGTYCIQFGFMMDKTNILNSEQVIVEVLP SEQVIVEVLPNQPVKLVPKIKPPTPAVSNV K T N V K L 0 0 3 0 0 2 2 0 0 2 2 1 0 0 2 1 1 0 0 4 0 0 20 0 2233.2318 A6NHR9;J3KTL8 A6NHR9 1471 1490 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 1.641E-06 72.891 2 2 1.3794 1.2476 3.3211 4 Median 1.2221 1.2441 3.5657 2 0 Median 1.5572 1.2583 4.3699 2 0 Median 46181000 19495000 26686000 30773000 13500000 17273000 15408000 5994900 9413300 13240 684 13601 34931;34932;34933;34934 54572;54573;54574;54575;54576;54577 54574 6 TNISEVNAATLLLGIENQHK WWLNFILTPDDFTVKTNISEVNAATLLLGI VNAATLLLGIENQHKISVPRAPTKEEMSLR K T N H K I 2 0 3 0 0 1 2 1 1 2 3 1 0 0 0 1 2 0 0 1 0 0 20 0 2164.1488 Q8IZT6;B3KWI2 Q8IZT6 720 739 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 0.00018771 36.246 2 2.0434 1.648 4.4949 2 Median NaN NaN NaN 0 0 Median 2.0434 1.648 4.4949 2 0 Median 12693000 5848500 6844100 0 0 0 12693000 5848500 6844100 13241 1902 13602 34935;34936 54578;54579 54578 1 TNLANVVLLLK YKNELLTTTVPEIQRTNLANVVLLLKSLGA EIQRTNLANVVLLLKSLGAQDLLQFHFMDP R T N L K S 1 0 2 0 0 0 0 0 0 0 4 1 0 0 0 0 1 0 0 2 0 0 11 0 1196.7493 A8K6G9;Q92620;B4DM30;B4DET0;B4DN69 A8K6G9 889 899 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.0015777 66.435 2 1.2477 1.255 2.0049 2 Median 1.2477 1.255 2.0049 2 0 Median NaN NaN NaN 0 0 Median 11753000 5533300 6219800 11753000 5533300 6219800 0 0 0 13242 760 13603 34937;34938 54580;54581;54582 54581 2 TNLDESDVQPVK GGVGFDINCGVRLLRTNLDESDVQPVKEQL LLRTNLDESDVQPVKEQLAQAMFDHIPVGV R T N V K E 0 0 1 2 0 1 1 0 0 0 1 1 0 0 1 1 1 0 0 2 0 0 12 0 1343.6569 Q9Y3I0;B4DNA0;B4DNG5 Q9Y3I0 129 140 RTCB tRNA-splicing ligase RtcB homolog yes no 2 6.4735E-31 175.64 2 2 1.1806 1.1628 16.261 4 Median 1.1718 1.3169 1.9519 2 0 Median 1.2382 1.0001 5.6771 2 0 Median 206130000 91222000 114910000 187910000 83041000 104870000 18220000 8181000 10039000 13243 2137 13604 34939;34940;34941;34942 54583;54584;54585;54586;54587;54588 54584 6 TNLDLGPTAPSLEK KTKILIKKGRGNLEKTNLDLGPTAPSLEKE KTNLDLGPTAPSLEKEKTLCLSTPSSSTVK K T N E K E 1 0 1 1 0 0 1 1 0 0 3 1 0 0 2 1 2 0 0 0 0 0 14 0 1454.7617 Q03164;E9PR05;Q9HB80 Q03164 972 985 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 8.6699E-15 135.15 2 2 1.1492 1.0366 41.454 4 Median 0.72726 0.7452 0.28087 2 0 Median 1.8802 1.5213 7.8634 2 0 Median 78067000 39413000 38654000 60963000 33638000 27324000 17104000 5774500 11330000 13244 1680 13605 34943;34944;34945;34946 54589;54590;54591;54592;54593;54594 54589 6 TNLEDVGR GKYGALVICETSEQKTNLEDVGRRLGQHVV CETSEQKTNLEDVGRRLGQHVVGMAPLSVG K T N G R R 0 1 1 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 902.44576 E5KS95;P43897;B4DHY8 E5KS95 247 254 TSFM Elongation factor Ts, mitochondrial yes no 2 0.012676 73.26 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7661100 0 7661100 7661100 0 7661100 0 0 0 13245 1208 13606 34947;34948 54595;54596 54595 2 TNLIVNYLPQNMTQDELR YEDHMAEDCRGDIGRTNLIVNYLPQNMTQD IVNYLPQNMTQDELRSLFSSIGEVESAKLI R T N L R S 0 1 3 1 0 2 1 0 0 1 3 0 1 0 1 0 2 0 1 1 0 0 18 0 2161.0838 Q15717;M0QZR9 Q15717 20 37 ELAVL1 ELAV-like protein 1 yes no 2 0.0018751 43.991 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4721600 0 4721600 4721600 0 4721600 0 0 0 13246 1764 13607 34949 54597 54597 1632 1 TNLLDELPQSVLK WEQNLKDPVAVQTAKTNLLDELPQSVLKWA AKTNLLDELPQSVLKWAPSGSSCCEIAQFL K T N L K W 0 0 1 1 0 1 1 0 0 0 4 1 0 0 1 1 1 0 0 1 0 0 13 0 1468.8137 A8K9L2;Q05CR6;Q86Y07 A8K9L2 265 277 VRK2 Serine/threonine-protein kinase VRK2 yes no 2 0.00028668 66.289 2 2 0.63504 0.58544 5.3471 4 Median 0.57041 0.57255 6.7592 2 0 Median 0.71123 0.59255 5.3191 2 0 Median 15356000 8359800 6996600 12406000 6641800 5763900 2950600 1717900 1232700 13247 787 13608 34950;34951;34952;34953 54598;54599;54600;54601;54602 54599 5 TNLLLQAHLSR PHKLNNPKFNDPHVKTNLLLQAHLSRMQLS PHVKTNLLLQAHLSRMQLSAELQSDTEEIL K T N S R M 1 1 1 0 0 1 0 0 1 0 4 0 0 0 0 1 1 0 0 0 0 0 11 0 1264.7252 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5;Q7L5W4;Q9P172 O75643 1891 1901 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 0.00012356 96.113 4 0.92586 1.0045 8.2273 4 Median 0.92586 1.0045 8.2273 4 0 Median NaN NaN NaN 0 0 Median 96537000 52245000 44292000 96537000 52245000 44292000 0 0 0 13248 1411 13609 34954;34955;34956;34957 54603;54604;54605;54606;54607;54608 54607 6 TNLSAVVAAQSNWEK DLVRNSQDDYDEERKTNLSAVVAAQSNWEK TNLSAVVAAQSNWEKVVPENLGLQEGTHEL K T N E K V 3 0 2 0 0 1 1 0 0 0 1 1 0 0 0 2 1 1 0 2 0 0 15 0 1616.8158 V9HWK0;O76094;Q86X80;A0PJJ5;Q0D2M6;Q71V07;D6RDY6;R4GNC1 V9HWK0 149 163 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 0.0020323 46.069 2 1.3153 1.1251 6.051 2 Median NaN NaN NaN 0 0 Median 1.3153 1.1251 6.051 2 0 Median 3234500 1221200 2013300 0 0 0 3234500 1221200 2013300 13249 1416 13610 34958;34959 54609;54610;54611;54612;54613 54610 5 TNLVWDEVSGQWR WQQFARLKGIRPKKKTNLVWDEVSGQWRRR KKTNLVWDEVSGQWRRRWGYQRARDDTKEW K T N W R R 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 1 1 2 0 2 0 0 13 0 1588.7634 Q15050 Q15050 129 141 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.00011507 88.441 2 2 0.70098 0.66155 24.443 4 Median 0.50332 0.53665 6.9079 2 0 Median 1.0004 0.81116 6.1515 2 0 Median 77084000 46873000 30211000 51143000 33700000 17443000 25941000 13173000 12768000 13250 1750 13611 34960;34961;34962;34963 54614;54615;54616;54617;54618;54619;54620;54621;54622;54623 54618 10 TNNFNVETLK GSEQTVVAFFIMPARTNNFNVETLKGQAVR IMPARTNNFNVETLKGQAVRKQLWDTANTV R T N L K G 0 0 3 0 0 0 1 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 10 0 1178.5932 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255;A0A024RAU5;P54840 P13807 372 381 GYS1;GYS2 Glycogen [starch] synthase, muscle;Glycogen [starch] synthase, liver yes no 2 8.9186E-06 104.89 2 2 0.36687 0.29566 7.7872 2 Median NaN NaN NaN 0 0 Median 0.36687 0.29566 7.7872 2 0 Median 1214000000 1179600000 34328000 1170200000 1148200000 21987000 43738000 31397000 12341000 13251 1479 13612 34964;34965;34966;34967 54624;54625;54626;54627 54624 4 TNNFSAFLANVR PHLEGLAEFQENVRKTNNFSAFLANVRKAF VRKTNNFSAFLANVRKAFTATVYN______ K T N V R K 2 1 3 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 12 0 1352.6837 Q9HBM1 Q9HBM1 204 215 SPC25 Kinetochore protein Spc25 yes yes 2 0.0062561 62.303 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13252 2050 13613 34968 54628 54628 1 TNPEYIYAPLK INYTYMLTRCIQACKTNPEYIYAPLKEIPP QACKTNPEYIYAPLKEIPPADIPKNKKLLT K T N L K E 1 0 1 0 0 0 1 0 0 1 1 1 0 0 2 0 1 0 2 0 0 0 11 0 1307.6762 Q6NUN2;A3F769;O15226;A3F768;A2I829;A2I831 Q6NUN2 212 222 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.03834 44.203 1 0.7368 0.58816 NaN 1 Median NaN NaN NaN 0 0 Median 0.7368 0.58816 NaN 1 0 Median 3081400 1892100 1189400 0 0 0 3081400 1892100 1189400 13253 655 13614 34969 54629 54629 1 TNPPLIQEK TQTPPLGQTPQLGLKTNPPLIQEKPAKTSK PQLGLKTNPPLIQEKPAKTSKKPPPSKEEL K T N E K P 0 0 1 0 0 1 1 0 0 1 1 1 0 0 2 0 1 0 0 0 0 0 9 0 1038.571 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89;E9PKF8 D3DQV9 521 529 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0021841 75.696 1 2.2267 2.292 NaN 1 Median 2.2267 2.292 NaN 1 0 Median NaN NaN NaN 0 0 Median 32436000 10961000 21474000 32436000 10961000 21474000 0 0 0 13254 1054 13615 34970 54630 54630 1 TNQEHAALEAENSK KGRVENLERELEIARTNQEHAALEAENSKG RTNQEHAALEAENSKGEVETLKAKIEGMTQ R T N S K G 3 0 2 0 0 1 3 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 14 0 1540.7118 P49454 P49454 2446 2459 CENPF Centromere protein F yes yes 2 0.041532 39.947 2 1.5161 1.2656 NaN 1 Median NaN NaN NaN 0 0 Median 1.5161 1.2656 NaN 1 0 Median 2883600 721510 2162100 0 0 0 2883600 721510 2162100 13255 1581 13616 34971;34972 54631;54632 54632 2 TNQELQEINR LGTDEDSLIEIICSRTNQELQEINRVYKEM IICSRTNQELQEINRVYKEMYKTDLEKDII R T N N R V 0 1 2 0 0 2 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1243.6157 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YKS4;B4DNH8;H0YMM1;H0YM50;A6NMY6;H0YNP5;H0YNA0;H0YN28;H0YL33;B3KRQ1;H0YN52;H0YLE2 V9HW65 136 145 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2 1.7051E-06 111.46 2 1 0.6509 0.60866 66.601 2 Median 0.95309 0.97477 NaN 1 0 Median 0.44452 0.38006 NaN 1 0 Median 28137000 16989000 11148000 25374000 15452000 9921600 2763500 1536900 1226500 13256 193 13617 34973;34974;34975 54633;54634;54635;54636;54637 54633 5 TNRPFISQK MMNAIKESYDYNPNKTNRPFISQKIHFPDF DYNPNKTNRPFISQKIHFPDFSTRDIHRNY K T N Q K I 0 1 1 0 0 1 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 9 1 1089.5931 O75530;B4DVW7 O75530 285 293 EED Polycomb protein EED yes no 2;3 4.0814E-23 158.37 4 2 1.8402 1.5524 15.806 3 Median 1.0722 1.2234 NaN 1 0 Median 1.8844 1.6004 4.3028 2 0 Median 60951000 38006000 22945000 41993000 31748000 10246000 18958000 6258300 12700000 13257 1407 13618 34976;34977;34978;34979;34980;34981 54638;54639;54640;54641;54642;54643 54639 6 TNRPPLSLSR STFNQVVLKRLFMSRTNRPPLSLSRMIRKM LFMSRTNRPPLSLSRMIRKMKLPGRENKTA R T N S R M 0 2 1 0 0 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 0 0 10 1 1139.6411 G3V203;A0A024QZD1;J3QQ67;Q07020;Q0QEW2;H0YHA7;F8VYV2;B4DDY5;A0A075B7A0;F8VUA6 G3V203 56 65 RPL18 60S ribosomal protein L18 yes no 2;3 2.054E-07 104.14 4 2 0.91056 1.1629 16.648 6 Linear 0.98392 1.237 13.49 4 0 Linear 0.89228 0.83679 2.1762 2 0 Median 4013500000 2040000000 1973500000 3913300000 1986200000 1927100000 100200000 53801000 46404000 13258 16 13619 34982;34983;34984;34985;34986;34987 54644;54645;54646;54647;54648;54649;54650;54651;54652 54648 9 TNSQFLSGPQK KSLHLQKPLESTWTKTNSQFLSGPQKSSSP TWTKTNSQFLSGPQKSSSPFTPLQKELFLI K T N Q K S 0 0 1 0 0 2 0 1 0 0 1 1 0 1 1 2 1 0 0 0 0 0 11 0 1205.6041 A8K0P8;Q68CQ4 A8K0P8 260 270 DIEXF Digestive organ expansion factor homolog yes no 2 7.8874E-05 98.048 2 0.75132 0.7544 2.0768 2 Median 0.75132 0.7544 2.0768 2 0 Median NaN NaN NaN 0 0 Median 20485000 10520000 9965700 20485000 10520000 9965700 0 0 0 13259 699 13620 34988;34989 54653;54654 54654 2 TNSTFNQVVLK YLRLLVKLYRFLARRTNSTFNQVVLKRLFM LARRTNSTFNQVVLKRLFMSRTNRPPLSLS R T N L K R 0 0 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 11 0 1249.6667 G3V203;A0A024QZD1;J3QQ67;Q07020;Q0QEW2;H0YHA7;F8VYV2;B4DDY5;A0A075B7A0 G3V203 39 49 RPL18 60S ribosomal protein L18 yes no 2 2.383E-12 140.11 2 2 0.95826 1.1285 21.219 4 Linear 0.94855 1.1243 4.4677 2 0 Median 0.9159 0.78086 1.4453 2 0 Median 1471600000 745300000 726300000 1329200000 671170000 658060000 142370000 74130000 68239000 13260 16 13621 34990;34991;34992;34993 54655;54656;54657;54658;54659;54660;54661;54662;54663;54664;54665;54666;54667;54668;54669 54655 15 TNTLAVTGGEDDK ALHSASVFCVSLDPKTNTLAVTGGEDDKAF PKTNTLAVTGGEDDKAFVWRLSDGELLFEC K T N D K A 1 0 1 2 0 0 1 2 0 0 1 1 0 0 0 0 3 0 0 1 0 0 13 0 1319.6205 C9JTS3;Q59EM1;C9JG97;A0A024R410;C9JEH3;Q13685 C9JTS3 57 69 AAMP Angio-associated migratory cell protein yes no 2 0.0060891 55.261 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4319400 0 4319400 4319400 0 4319400 0 0 0 13261 145 13622 34994 54670 54670 1 TNVLGHLQQGGAPTPFDR YNLYSSEGKGVFDCRTNVLGHLQQGGAPTP LGHLQQGGAPTPFDRNYGTKLGVKAMLWLS R T N D R N 1 1 1 1 0 2 0 3 1 0 2 0 0 1 2 0 2 0 0 1 0 0 18 0 1906.965 P17858;Q7L2M7;Q9BSP4;B3KNQ7 P17858 655 672 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 3 9.4568E-13 86.539 1 2 0.69746 0.5827 43.454 3 Median 1.128 1.2317 NaN 1 0 Median 0.67632 0.58027 0.59122 2 0 Median 45805000 22714000 23091000 38824000 18444000 20381000 6980900 4270400 2710600 13262 1495 13623 34995;34996;34997 54671;54672;54673;54674 54672 4 TNVVTMPTAHPR EDVIPATQCLTPGIRTNVVTMPTAHPRIAP GIRTNVVTMPTAHPRIAPKASMAGASSSKE R T N P R I 1 1 1 0 0 0 0 0 1 0 0 0 1 0 2 0 3 0 0 2 0 0 12 0 1322.6765 E7ETY2;B4DRA2;Q13428;Q59FZ2 Q13428 1019 1030 TCOF1 Treacle protein no no 2;3 8.9287E-05 80.782 3 0.90498 0.95313 16.85 3 Median 0.90498 0.95313 16.85 3 0 Median NaN NaN NaN 0 0 Median 93127000 46677000 46450000 93127000 46677000 46450000 0 0 0 13263 1712;1225 13624 34998;34999;35000 54675;54676;54677 54675 937 3 TNYDIVVR KKKKELKQSRQLSDKTNYDIVVRAKQMWEI SRQLSDKTNYDIVVRAKQMWEILRRKDCDK K T N V R A 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 8 0 978.51345 Q15397 Q15397 130 137 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.04994 43.769 1 0.97183 0.80694 NaN 1 Median NaN NaN NaN 0 0 Median 0.97183 0.80694 NaN 1 0 Median 5067300 2521100 2546200 0 0 0 5067300 2521100 2546200 13264 1761 13625 35001 54678 54678 1 TNYNDRYDEIR SEDKGALAKLVEAIRTNYNDRYDEIRRHWG EAIRTNYNDRYDEIRRHWGGNVLGPKSVAR R T N I R R 0 2 2 2 0 0 1 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 11 1 1457.6535 P62424;Q9BY74;Q5T8U2 P62424 224 234 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2;3 0.00015218 87.001 3 0.83643 0.9502 4.1277 3 Plateau 0.83643 0.9502 4.1277 3 0 Plateau NaN NaN NaN 0 0 Median 263220000 145170000 118060000 263220000 145170000 118060000 0 0 0 13265 1648 13626 35002;35003;35004 54679;54680;54681;54682;54683 54682 5 TPAAAAAMNLASPR RTPAIPTAVNLADSRTPAAAAAMNLASPRT RTPAAAAAMNLASPRTAVAPSAVNLADPRT R T P P R T 6 1 1 0 0 0 0 0 0 0 1 0 1 0 2 1 1 0 0 0 0 0 14 0 1340.6871 A0A140VK53;Q9UQ35;O60382;A0AUK8 A0A140VK53 2261 2274 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 6.6394E-11 109.72 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13266 619 13627 35005;35006;35007 54684;54685;54686 54685 477 3 TPAEVVSTCDITFACVSDPK VWNRTAEKEGARLGRTPAEVVSTCDITFAC VSTCDITFACVSDPKAAKDLVLGPSGVLQG R T P P K A 2 0 0 2 2 0 1 0 0 1 0 1 0 1 2 2 3 0 0 3 0 0 20 0 2196.0079 D3DUE6;K7EMM8;K7EK70;D3DUE7;Q49A26 D3DUE7 332 351 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2 6.7403E-07 81.311 2 2 2.2703 1.7299 21.358 4 Linear 1.0845 1.1211 6.1869 2 0 Median 2.0173 1.6121 3.2793 2 0 Median 74177000 30138000 44039000 32594000 16327000 16267000 41583000 13811000 27772000 13267 1194;1193 13628 35008;35009;35010;35011 54687;54688;54689;54690;54691;54692;54693;54694 54692 8 TPAFSPFVR LKYISSCKRLRSDSRTPAFSPFVRVEKRDA LRSDSRTPAFSPFVRVEKRDAFTTICTVVN R T P V R V 1 1 0 0 0 0 0 0 0 0 0 0 0 2 2 1 1 0 0 1 0 0 9 0 1020.5393 Q7Z5J4 Q7Z5J4 1592 1600 RAI1 Retinoic acid-induced protein 1 yes yes 2 0.040651 50.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 930020 0 930020 0 0 0 930020 0 930020 13268 1879 13629 35012 54695 54695 1 TPAIPTAVNLADSR IPAASAAAMNLASARTPAIPTAVNLADSRT RTPAIPTAVNLADSRTPAAAAAMNLASPRT R T P S R T 3 1 1 1 0 0 0 0 0 1 1 0 0 0 2 1 2 0 0 1 0 0 14 0 1424.7623 A0A140VK53;Q9UQ35;O60382;A0AUK8 A0A140VK53 2247 2260 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.0013412 71.888 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32919000 0 32919000 32919000 0 32919000 0 0 0 13269 619 13630 35013;35014 54696;54697 54696 2 TPALISDYK YKEQVLEPMLNGTDKTPALISDYKEYHTDT LNGTDKTPALISDYKEYHTDTTVNSVVKMT K T P Y K E 1 0 0 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 0 0 0 9 0 1006.5335 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 943 951 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 6.2749E-05 111.39 2 2 0.78096 0.7354 18.009 4 Median 0.58823 0.65293 11.367 2 0 Median 1.0506 0.8429 13.84 2 0 Median 132370000 79511000 52859000 112760000 70576000 42184000 19610000 8935100 10675000 13270 1679 13631 35015;35016;35017;35018 54698;54699;54700;54701;54702;54703;54704;54705 54698 8 TPAQYDASELK ALSGHLETVILGLLKTPAQYDASELKASMK GLLKTPAQYDASELKASMKGLGTDEDSLIE K T P L K A 2 0 0 1 0 1 1 0 0 0 1 1 0 0 1 1 1 0 1 0 0 0 11 0 1221.5877 V9HW65;A0A024R5Z7;P07355;H0YMD0;H0YMU9;H0YN42;H0YKS4;B4DNH8;H0YMM1;H0YM50;A6NMY6;H0YNP5;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4 V9HW65 105 115 HEL-S-270;ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2 5.8115E-05 98.156 2 1.1783 1.2838 NaN 1 Median 1.1783 1.2838 NaN 1 0 Median NaN NaN NaN 0 0 Median 56799000 17615000 39184000 56799000 17615000 39184000 0 0 0 13271 193 13632 35019;35020 54706;54707 54706 2 TPASINATPANINLADLTR DPVPGITPSSSSRTRTPASINATPANINLA INATPANINLADLTRAVNALPQNMTSQMFS R T P T R A 4 1 3 1 0 0 0 0 0 2 2 0 0 0 2 1 3 0 0 0 0 0 19 0 1952.0327 Q7KZ85 Q7KZ85 1532 1550 SUPT6H Transcription elongation factor SPT6 yes yes 2 1.3424E-05 69.345 2 1.181 1.199 6.5867 2 Median 1.181 1.199 6.5867 2 0 Median NaN NaN NaN 0 0 Median 23317000 9914500 13402000 23317000 9914500 13402000 0 0 0 13272 1870 13633 35021;35022 54708;54709 54708 2 TPASPVVHIR AGGGGGGENYDDPHKTPASPVVHIRGLIDG DDPHKTPASPVVHIRGLIDGVVEADLVEAL K T P I R G 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 1 0 0 2 0 0 10 0 1075.6138 B2R959;Q6NTA2;P14866;M0QXS5;M0R1W6;M0QYL7 B2R959 67 76 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 3 0.00011226 88.681 1 1.5898 1.8298 NaN 1 Median 1.5898 1.8298 NaN 1 0 Median NaN NaN NaN 0 0 Median 146720000 58729000 87993000 146720000 58729000 87993000 0 0 0 13273 865 13634 35023 54710;54711 54711 2 TPATAPVPAR SPSVPKRPKLPAPTRTPATAPVPARAQGAV PAPTRTPATAPVPARAQGAVTGKPRGEGTE R T P A R A 3 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 2 0 0 1 0 0 10 0 979.54508 F5H8D7;A0A024R0S8;Q59HH7;P18887;B4DEB2 F5H8D7 250 259 XRCC1 DNA repair protein XRCC1 yes no 2 2.966E-09 125.31 1 1 0.57742 0.61009 NaN 1 Median 0.57742 0.61009 NaN 1 0 Median NaN NaN NaN 0 0 Median 41536000 23669000 17867000 40493000 22626000 17867000 1042900 1042900 0 13274 58 13635 35024;35025 54712;54713 54712 2 TPCEEILVK KAGNNMLLVGVHGPRTPCEEILVKHVGSRL GVHGPRTPCEEILVKHVGSRLYSVSYLLKD R T P V K H 0 0 0 0 1 0 2 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1087.5583 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2599 2607 FLNA;FLJ00119 Filamin-A yes no 2 0.050344 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13275 1504 13636 35026 54714 54714 1 TPCNAGTFSQPEK VTGSWDQTVKLWDPRTPCNAGTFSQPEKVY PRTPCNAGTFSQPEKVYTLSVSGDRLIVGT R T P E K V 1 0 1 0 1 1 1 1 0 0 0 1 0 1 2 1 2 0 0 0 0 0 13 0 1435.6402 J3QT28;A0A140VJF3;O43684;B4DDM6;J3QSX4 J3QT28 127 139 BUB3 Mitotic checkpoint protein BUB3 yes no 2 1.5209E-61 257.75 2 1 0.88574 0.90184 6.7177 3 Median 0.88004 0.93561 9.0138 2 0 Median 1.126 0.90184 NaN 1 0 Median 92793000 46759000 46034000 84273000 42792000 41481000 8520000 3966400 4553600 13276 600 13637 35027;35028;35029 54715;54716;54717;54718;54719;54720;54721 54717 7 TPCSSLLPLLNAHAATSGK LCGEITHPKNNYSSRTPCSSLLPLLNAHAA SLLPLLNAHAATSGKQSNFSRKSSTHNKPS R T P G K Q 3 0 1 0 1 0 0 1 1 0 4 1 0 0 2 3 2 0 0 0 0 0 19 0 1937.004 A0A024R3V0;Q9NUQ6;B8ZZZ7 A0A024R3V0 365 383 DNAPTP6;SPATS2L SPATS2-like protein yes no 3 0.029397 28.891 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5361100 5361100 0 5361100 5361100 0 0 0 0 13277 141 13638 35030 54722 54722 1 TPDGQYIYR VGTMLAYSLTYRQERTPDGQYIYRLEPNVE TYRQERTPDGQYIYRLEPNVEELCRFPELP R T P Y R L 0 1 0 1 0 1 0 1 0 1 0 0 0 0 1 0 1 0 2 0 0 0 9 0 1111.5298 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6 E7EXA6 808 816 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 2 0.0014644 85.064 1 1.1471 1.1417 NaN 1 Median 1.1471 1.1417 NaN 1 0 Median NaN NaN NaN 0 0 Median 8085200 3278000 4807200 8085200 3278000 4807200 0 0 0 13278 524 13639 35031 54723 54723 1 TPEEVIEYSAVFWER GRDDIENIAREVEGKTPEEVIEYSAVFWER TPEEVIEYSAVFWERCNELQDIEKIMAQIE K T P E R C 1 1 0 0 0 0 4 0 0 1 0 0 0 1 1 1 1 1 1 2 0 0 15 0 1853.8836 O60264;B7ZAX9;B4DZC0 O60264 876 890 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.00054215 55.261 2 5.0004 4.2256 2.3287 2 Median NaN NaN NaN 0 0 Median 5.0004 4.2256 2.3287 2 0 Median 12362000 2104100 10258000 0 0 0 12362000 2104100 10258000 13279 1391 13640 35032;35033 54724;54725;54726 54724 3 TPEITVSIIK SKALDRVLDPTCTIKTPEITVSIIKELNRR TCTIKTPEITVSIIKELNRRGVLANALAGR K T P I K E 0 0 0 0 0 0 1 0 0 3 0 1 0 0 1 1 2 0 0 1 0 0 10 0 1099.6489 Q8TED0;H0Y8P4 Q8TED0 389 398 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 9.6112E-06 105.52 2 2 1.0461 1.028 5.7965 4 Median 0.94201 1.0591 3.0709 2 0 Median 1.1989 0.98019 5.6076 2 0 Median 240410000 118750000 121660000 184960000 92638000 92321000 55451000 26115000 29336000 13280 1936 13641 35034;35035;35036;35037 54727;54728;54729;54730;54731;54732;54733;54734;54735 54729 9 TPEIYLAYR RRALPEFFNGKNKSKTPEIYLAYRNFMIDT GKNKSKTPEIYLAYRNFMIDTYRLNPQEYL K T P Y R N 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 1 0 2 0 0 0 9 0 1124.5866 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 483 491 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 4.093E-06 116.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13281 1798;321 13642 35038 54736 54736 1 TPELNLDQFHDK NGIECGGAYVKLLSKTPELNLDQFHDKTPY LSKTPELNLDQFHDKTPYTIMFGPDKCGED K T P D K T 0 0 1 2 0 1 1 0 1 0 2 1 0 1 1 0 1 0 0 0 0 0 12 0 1455.6994 P27824;H0Y9Q7;D6RGY2;Q6ZP56;D6RFL1;H0Y9H1 P27824 171 182 CANX Calnexin yes no 2;3 0.0022118 59.265 3 0.96092 1.0648 1.3183 2 Median 0.96092 1.0648 1.3183 2 0 Median NaN NaN NaN 0 0 Median 116600000 53732000 62866000 116600000 53732000 62866000 0 0 0 13282 1526 13643 35039;35040;35041 54737;54738;54739;54740;54741 54737 5 TPELPEPSVK TKSRSPSPAPEKKEKTPELPEPSVKVKEPS EKKEKTPELPEPSVKVKEPSVQEATSTSDI K T P V K V 0 0 0 0 0 0 2 0 0 0 1 1 0 0 3 1 1 0 0 1 0 0 10 0 1095.5812 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;E9PCT1;M0R088;B4DED5 A0A0S2Z4W1 220 229 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2 0.039892 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3199500 3199500 0 3199500 3199500 0 0 0 0 13283 570 13644 35042 54742 54742 1 TPELTWER NMGHSNTEIDVTSLRTPELTWERVRSQVDH IDVTSLRTPELTWERVRSQVDHVIWPDGKR R T P E R V 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 0 2 1 0 0 0 0 8 0 1030.5084 Q6ZMM9;Q2NKW8;H0Y8B3;Q6ZNS6;A0A024R0A8;V5YQL4;O43865;Q96HN2;Q6ZMI1;Q9BTL0;O43210 Q6ZMM9 275 282 AHCYL1;AHCYL2;FGFR2-AHCYL1 Adenosylhomocysteinase;Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 2 0.0010104 116.73 1 1.54 1.5341 NaN 1 Median 1.54 1.5341 NaN 1 0 Median NaN NaN NaN 0 0 Median 16491000 6159000 10332000 16491000 6159000 10332000 0 0 0 13284 40 13645 35043 54743;54744 54743 2 TPENFPCK TCQRWSEQTPHKHNRTPENFPCKNLEENYC TPHKHNRTPENFPCKNLEENYCRNPNGEKA R T P C K N 0 0 1 0 1 0 1 0 0 0 0 1 0 1 2 0 1 0 0 0 0 0 8 0 991.44332 CON__P06868;A0A0F7G8J1;B2R7F8;P00747 CON__P06868 317 324 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes no 2 0.007909 81.296 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5403700 5403700 0 0 0 0 5403700 5403700 0 + 13285 1157 13646 35044 54745 54745 1 TPENYPNAGLTMNYCR KCQSWSSMTPHRHLKTPENYPNAGLTMNYC PENYPNAGLTMNYCRNPDADKSPWCYTTDP K T P C R N 1 1 3 0 1 0 1 1 0 0 1 0 1 0 2 0 2 0 2 0 0 0 16 0 1899.8244 CON__P06868;B2R7F8;P00747;B4DPH4 CON__P06868 419 434 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes no 2 0.0010968 56.087 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9120400 9120400 0 9120400 9120400 0 0 0 0 + 13286 1157 13647 35045 54746;54747 54747 871 2 TPEPVVPTAPEPHPTTSTDQPVTPK TSRATRCRTNRSSVKTPEPVVPTAPEPHPT EPHPTTSTDQPVTPKLTSRATRRKTNRSSV K T P P K L 1 0 0 1 0 1 2 0 1 0 0 1 0 0 8 1 6 0 0 3 0 0 25 0 2622.3177 Q14676;B4DYH4 Q14676 1608 1632 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 1.4439E-13 81.949 2 0.54675 0.55503 2.5003 2 Median 0.54675 0.55503 2.5003 2 0 Median NaN NaN NaN 0 0 Median 48635000 30957000 17679000 48635000 30957000 17679000 0 0 0 13287 1738 13648 35046;35047 54748;54749;54750;54751;54752;54753 54750 6 TPEQVAEEEYLLQELR HERRRKEQLERLYNRTPEQVAEEEYLLQEL PEQVAEEEYLLQELRKIEARKKEREKRSQD R T P L R K 1 1 0 0 0 2 5 0 0 0 3 0 0 0 1 0 1 0 1 1 0 0 16 0 1945.9633 B4DQG8;Q9NPF5;Q5TG40;Q5TG39 B4DQG8 227 242 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.0056242 42.809 1 1 0.99342 0.83867 NaN 1 Median NaN NaN NaN 0 0 Median 0.99342 0.83867 NaN 1 0 Median 4793600 2471900 2321800 0 0 0 4793600 2471900 2321800 13288 1024 13649 35048;35049 54754;54755 54755 2 TPESIVPIAPELQPSTSR TSRATRGRTNRSSVKTPESIVPIAPELQPS SIVPIAPELQPSTSRNQLVTPEPTSRATRC K T P S R N 1 1 0 0 0 1 2 0 0 2 1 0 0 0 4 3 2 0 0 1 0 0 18 0 1921.0157 Q14676 Q14676 1567 1584 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 3.2614E-05 64.65 2 2 0.45965 0.4176 3.9053 3 Median 0.41645 0.4176 NaN 1 0 Median 0.4829 0.40583 5.0054 2 0 Median 39266000 22829000 16438000 22451000 11878000 10573000 16815000 10951000 5864400 13289 1738 13650 35050;35051;35052;35053 54756;54757;54758;54759;54760;54761 54757 6 TPESKPTILVK NMGWADAMAKVLNKKTPESKPTILVKNKKL LNKKTPESKPTILVKNKKLEKEKEKLKQER K T P V K N 0 0 0 0 0 0 1 0 0 1 1 2 0 0 2 1 2 0 0 1 0 0 11 1 1211.7125 Q9Y3B9;A8K201;A0JLN3 Q9Y3B9 104 114 RRP15 RRP15-like protein yes no 3 0.0037312 42.031 1 0.80949 0.92873 NaN 1 Median 0.80949 0.92873 NaN 1 0 Median NaN NaN NaN 0 0 Median 21594000 12011000 9582900 21594000 12011000 9582900 0 0 0 13290 2134 13651 35054 54762 54762 1 TPETIPLTEDVLITLGK QVKCLTAELSQWQKKTPETIPLTEDVLITL ETIPLTEDVLITLGKEEFQKLRQDLEMVLS K T P G K E 0 0 0 1 0 0 2 1 0 2 3 1 0 0 2 0 4 0 0 1 0 0 17 0 1839.0241 D6RJF0;D6RHD3;Q9BS16;D6RBN6;D6RAX0;D6RC76 D6RJF0 48 64 CENPK Centromere protein K yes no 2 4.76E-09 107.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13291 1203 13652 35055 54763 54763 1 TPETLVPTAPK TSRATRGRKNRSSGKTPETLVPTAPKLEPS SSGKTPETLVPTAPKLEPSTSTDQPVTPEP K T P P K L 1 0 0 0 0 0 1 0 0 0 1 1 0 0 3 0 3 0 0 1 0 0 11 0 1152.639 Q14676;B4DYH4 Q14676 1403 1413 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.025291 63.426 1 0.60096 0.4854 NaN 1 Median NaN NaN NaN 0 0 Median 0.60096 0.4854 NaN 1 0 Median 2983600 1936900 1046600 0 0 0 2983600 1936900 1046600 13292 1738 13653 35056 54764 54764 0 TPETVVPTALELQPSTSTDRPVTSEPTSQATR TSQVTRGRKSRSSVKTPETVVPTALELQPS TDRPVTSEPTSQATRGRKNRSSVKTPEPVV K T P T R G 2 2 0 1 0 2 3 0 0 0 2 0 0 0 5 4 8 0 0 3 0 0 32 1 3395.7056 Q14676;B4DYH4;H0Y6Z8 Q14676 1198 1229 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 2.1632E-05 36.378 2 0.69096 0.6051 5.0749 2 Median NaN NaN NaN 0 0 Median 0.69096 0.6051 5.0749 2 0 Median 22308000 14273000 8034700 0 0 0 22308000 14273000 8034700 13293 1738 13654 35057;35058 54765;54766;54767;54768 54768 4 TPETVVPTAPELQISTSTDQPVTPKPTSR TSRTTRSRTNMSSVKTPETVVPTAPELQIS STSTDQPVTPKPTSRTTRSRTNMSSVKNPE K T P S R T 1 1 0 1 0 2 2 0 0 1 1 1 0 0 6 3 7 0 0 3 0 0 29 1 3076.5928 Q14676 Q14676 1321 1349 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 5.5327E-16 64.779 2 0.50436 0.42566 0.89749 2 Median NaN NaN NaN 0 0 Median 0.50436 0.42566 0.89749 2 0 Median 16353000 10272000 6081100 0 0 0 16353000 10272000 6081100 13294 1738 13655 35059;35060 54769;54770;54771;54772 54770 4 TPEVSFLPEEATEEAGVR PALTPDSQTVDSSCKTPEVSFLPEEATEEA VSFLPEEATEEAGVRGGAEEEEEEEEEEEE K T P V R G 2 1 0 0 0 0 5 1 0 0 1 0 0 1 2 1 2 0 0 2 0 0 18 0 1959.9426 A0A024QZH6;Q9H7N4 A0A024QZH6 1001 1018 SR-A1;SCAF1 Splicing factor, arginine/serine-rich 19 yes no 2 0.0011446 75.479 3 1.2737 1.3243 NaN 1 Median 1.2737 1.3243 NaN 1 0 Median NaN NaN NaN 0 0 Median 5427800 2721900 2705900 5427800 2721900 2705900 0 0 0 13295 22 13656 35061;35062;35063 54773;54774;54775 54774 3 TPFLLSGTSYK AKPNIRNVVVVDGVRTPFLLSGTSYKDLMP DGVRTPFLLSGTSYKDLMPHDLARAALTGL R T P Y K D 0 0 0 0 0 0 0 1 0 0 2 1 0 1 1 2 2 0 1 0 0 0 11 0 1212.639 P55084;B5MD38;D6W539;C9JEY0;C9JE81;C9K0M0 P55084 62 72 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 9.668E-05 97.277 2 2 1.1118 1.0407 31.876 4 Median 1.2823 1.4182 12.775 2 0 Median 1.0374 0.82897 1.1794 2 0 Median 130360000 57738000 72618000 121450000 53399000 68055000 8903300 4339700 4563700 13296 1615 13657 35064;35065;35066;35067 54776;54777;54778;54779 54777 4 TPFNTDLGENSGIGK KLVETDFSTPTPRRKTPFNTDLGENSGIGK TPFNTDLGENSGIGKLFTNAVESLDEEEKD K T P G K L 0 0 2 1 0 0 1 3 0 1 1 1 0 1 1 1 2 0 0 0 0 0 15 0 1548.742 Q6P0N0 Q6P0N0 1094 1108 MIS18BP1 Mis18-binding protein 1 yes yes 2 2.6135E-30 151.52 3 0.63554 0.646 0.48554 2 Median 0.63554 0.646 0.48554 2 0 Median NaN NaN NaN 0 0 Median 29435000 18337000 11099000 29435000 18337000 11099000 0 0 0 13297 1849 13658 35068;35069;35070 54780;54781;54782 54781 3 TPGAATASASGAAEDGACGCLPNPGTFEECHR GSLGAGTSTSRSSERTPGAATASASGAAED CGCLPNPGTFEECHRKCKELFPIQMEGVKL R T P H R K 7 1 1 1 3 0 3 5 1 0 1 0 0 1 3 2 3 0 0 0 0 0 32 0 3218.3452 O96008;K7EJ57 O96008 57 88 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 3 6.5485E-27 82.086 2 1.1654 1.2956 5.0815 2 Median 1.1654 1.2956 5.0815 2 0 Median NaN NaN NaN 0 0 Median 100160000 42879000 57282000 100160000 42879000 57282000 0 0 0 13298 1433 13659 35071;35072 54783;54784;54785;54786;54787 54784 5 TPGFSVQSISDFEK GDHRESKKSRSHSAKTPGFSVQSISDFEKF KTPGFSVQSISDFEKFTKGMDDLGSSEEEE K T P E K F 0 0 0 1 0 1 1 1 0 1 0 1 0 2 1 3 1 0 0 1 0 0 14 0 1540.7409 Q9NY61 Q9NY61 146 159 AATF Protein AATF yes yes 2 1.9589E-46 225.1 2 3 1.0136 1.144 10.845 3 Median 1.0064 1.1379 0.75376 2 0 Median 1.6371 1.3727 NaN 1 0 Median 388210000 188470000 199740000 282190000 148610000 133580000 106020000 39859000 66163000 13299 2080 13660 35073;35074;35075;35076;35077 54788;54789;54790;54791;54792;54793;54794;54795 54790 8 TPGPGAQSALR ALHIKLRATGGNRTKTPGPGAQSALRALAR NRTKTPGPGAQSALRALARSGMKIGRIEDV K T P L R A 2 1 0 0 0 1 0 2 0 0 1 0 0 0 2 1 1 0 0 0 0 0 11 0 1053.5567 P62263;H0YB22;E5RH77 P62263 107 117 RPS14 40S ribosomal protein S14 yes no 2 5.9712E-66 221.83 2 2 0.94251 0.94777 5.8356 4 Median 0.84608 1.0017 2.3767 2 0 Median 1.0437 0.90811 0.60121 2 0 Median 2487100000 1316000000 1171100000 2165900000 1159700000 1006200000 321140000 156240000 164900000 13300 1638 13661 35078;35079;35080;35081 54796;54797;54798;54799;54800;54801;54802 54799 7 TPGPPGLTTTPAPPDK PRMCTRSLTALSEPRTPGPPGLTTTPAPPD PGPPGLTTTPAPPDKLGGKQRAAFKSGKRV R T P D K L 1 0 0 1 0 0 0 2 0 0 1 1 0 0 6 0 4 0 0 0 0 0 16 0 1545.8039 Q7Z5J4 Q7Z5J4 1068 1083 RAI1 Retinoic acid-induced protein 1 yes yes 2 4.1375E-12 117.03 2 1 0.80831 0.83692 8.6058 2 Median 0.80831 0.83692 8.6058 2 0 Median NaN NaN NaN 0 0 Median 35032000 17248000 17784000 32310000 17248000 15062000 2722300 0 2722300 13301 1879 13662 35082;35083;35084 54803;54804;54805;54806;54807 54805 5 TPIPLLLR SLQPKGYTLATTQVKTPIPLLLRGQLREYQ LATTQVKTPIPLLLRGQLREYQHIGLDWLV K T P L R G 0 1 0 0 0 0 0 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 8 0 921.60114 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4;G1UI29;A0A087X0E3 A0A0A0MS59 411 418 SRCAP Helicase SRCAP yes no 2 0.030669 51.787 1 0.68249 0.68795 NaN 1 Median 0.68249 0.68795 NaN 1 0 Median NaN NaN NaN 0 0 Median 6435000 3298100 3136900 6435000 3298100 3136900 0 0 0 13302 476 13663 35085 54808 54808 1 TPLEDYSGECFR VESRQFPVTVHFNKRTPLEDYSGECFRKVC NKRTPLEDYSGECFRKVCKIHRMLPAGGIL R T P F R K 0 1 0 1 1 0 2 1 0 0 1 0 0 1 1 1 1 0 1 0 0 0 12 0 1472.6242 Q8IY37;F5H3Y4 Q8IY37 447 458 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.048127 32.946 1 1.0555 0.93567 NaN 1 Median NaN NaN NaN 0 0 Median 1.0555 0.93567 NaN 1 0 Median 1560600 765740 794870 0 0 0 1560600 765740 794870 13303 1897 13664 35086 54809 54809 1 TPLENLVLQAK RLEKMVPFQVPEILRTPLENLVLQAKIHMP EILRTPLENLVLQAKIHMPEKTAVEFLSKA R T P A K I 1 0 1 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1224.7078 H7BXY3;A0A024R2T6;Q7L2E3;Q6W6M7 H7BXY3 786 796 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 2.3712E-12 140.16 2 2 1.4522 1.3276 7.1524 4 Median 1.3318 1.3936 2.4793 2 0 Median 1.5883 1.2456 4.6209 2 0 Median 60880000 26472000 34408000 52011000 22961000 29050000 8868600 3510800 5357800 13304 122 13665 35087;35088;35089;35090 54810;54811;54812;54813;54814;54815;54816 54810 7 TPLEPPPIVVVVMGPPK QDLKTKKHHIPVVDRTPLEPPPIVVVVMGP LEPPPIVVVVMGPPKVGKSTLIQCLIRNFT R T P P K V 0 0 0 0 0 0 1 1 0 1 1 1 1 0 6 0 1 0 0 4 0 0 17 0 1769.0161 Q14692 Q14692 76 92 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 1.1212E-05 83.081 3 1.7044 1.7277 54.314 3 Plateau 1.7044 1.7277 54.314 3 0 Plateau NaN NaN NaN 0 0 Median 56834000 20909000 35925000 56834000 20909000 35925000 0 0 0 13305 1742 13666;13667 35091;35092;35093 54817;54818;54819;54820 54819 1594 4 TPLEQEIFNLLHK AIAPIEHVLSGWKARTPLEQEIFNLLHKNK ARTPLEQEIFNLLHKNKQPVTDPLLTPVEK R T P H K N 0 0 1 0 0 1 2 0 1 1 3 1 0 1 1 0 1 0 0 0 0 0 13 0 1580.8562 Q9BVJ6;B4E343;X6RJY0;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 182 194 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C no no 2;3 5.3187E-14 130.56 4 4 1.4272 1.1598 3.6699 6 Median 0.99364 1.1178 1.3413 2 0 Median 1.451 1.1751 2.7826 4 0 Median 287950000 142710000 145240000 207650000 108430000 99221000 80295000 34278000 46017000 13306 2008;393 13668 35094;35095;35096;35097;35098;35099;35100;35101 54821;54822;54823;54824;54825;54826;54827;54828;54829;54830;54831;54832;54833;54834 54826 14 TPLFDQIIDMLR CNALETLLIHRDLLRTPLFDQIIDMLRVEQ LLRTPLFDQIIDMLRVEQVKIHAGPKFASY R T P L R V 0 1 0 2 0 1 0 0 0 2 2 0 1 1 1 0 1 0 0 0 0 0 12 0 1460.7697 P54886 P54886 627 638 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 9.1561E-06 103.91 3 2.4954 2.5132 8.1083 3 Median 2.4954 2.5132 8.1083 3 0 Median NaN NaN NaN 0 0 Median 29852000 10179000 19673000 29852000 10179000 19673000 0 0 0 13307 1611 13669 35102;35103;35104 54835;54836;54837;54838;54839;54840 54838 1402 6 TPLHEIALSIK RFERLETHMTPEMFRTPLHEIALSIKLLRL EMFRTPLHEIALSIKLLRLGGIGQFLAKAI R T P I K L 1 0 0 0 0 0 1 0 1 2 2 1 0 0 1 1 1 0 0 0 0 0 11 0 1220.7129 Q08211;B3KU66 Q08211 796 806 DHX9 ATP-dependent RNA helicase A yes no 3 0.0001222 81.709 2 1 1.3559 1.5085 10.857 3 Median 1.3184 1.5274 1.7653 2 0 Median 1.5786 1.2672 NaN 1 0 Median 575290000 242730000 332560000 561270000 237600000 323670000 14019000 5124000 8895100 13308 1691 13670 35105;35106;35107 54841;54842;54843;54844;54845 54841 5 TPLLDDPVFIHPSSVLFK QSEEMLEDKWRNAYKTPLLDDPVFIHPSSV LDDPVFIHPSSVLFKELPEFVVYQEIVETT K T P F K E 0 0 0 2 0 0 0 0 1 1 3 1 0 2 3 2 1 0 0 2 0 0 18 0 2024.0983 Q8IY37;F5H3Y4 Q8IY37 957 974 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 3 6.4428E-06 72.184 2 2 1.0752 0.99521 9.0132 4 Median 1.0279 1.0657 0.56324 2 0 Median 1.1473 0.91423 2.8835 2 0 Median 56627000 27147000 29480000 31144000 15925000 15219000 25483000 11222000 14261000 13309 1897 13671 35108;35109;35110;35111 54846;54847;54848;54849;54850;54851;54852;54853;54854 54849 9 TPLRPLDPTR GLPHISDVVLDKANKTPLRPLDPTRLQGIN DKANKTPLRPLDPTRLQGINCGPDFTPSFA K T P T R L 0 2 0 1 0 0 0 0 0 0 2 0 0 0 3 0 2 0 0 0 0 0 10 1 1164.6615 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 483 492 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 3 0.036902 26.012 1 1.8255 1.9868 NaN 1 Median 1.8255 1.9868 NaN 1 0 Median NaN NaN NaN 0 0 Median 66977000 21178000 45799000 66977000 21178000 45799000 0 0 0 13310 896 13672 35112 54855 54855 1 TPLSTGGTLAFVSPSLAVHK TVSAGKGSATSNWKKTPLSTGGTLAFVSPS GGTLAFVSPSLAVHKSSSAVDRQREYLLDM K T P H K S 2 0 0 0 0 0 0 2 1 0 3 1 0 1 2 3 3 0 0 2 0 0 20 0 1982.0837 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 586 605 GATAD2A Transcriptional repressor p66-alpha yes no 3 2.6208E-07 79.676 1 2 2.0822 1.6161 39.629 3 Median 0.78388 0.87206 NaN 1 0 Median 2.1758 1.7182 8.6576 2 0 Median 81437000 40345000 41092000 50952000 30334000 20618000 30485000 10011000 20474000 13311 229 13673 35113;35114;35115 54856;54857;54858;54859;54860;54861 54857 6 TPLVSVLLEGPPHSGK DDGELLVQQTKNSDRTPLVSVLLEGPPHSG PLVSVLLEGPPHSGKTALAAKIAEESNFPF R T P G K T 0 0 0 0 0 0 1 2 1 0 3 1 0 0 3 2 1 0 0 2 0 0 16 0 1629.909 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;B4DGR3;Q96D47;D3DXJ4 I3L0N3 529 544 NSF Vesicle-fusing ATPase yes no 3 0.0025063 50.04 2 1.2313 1.2355 NaN 1 Median 1.2313 1.2355 NaN 1 0 Median NaN NaN NaN 0 0 Median 17679000 4411000 13268000 17679000 4411000 13268000 0 0 0 13312 1096 13674 35116;35117 54862;54863 54862 2 TPMENIGLQDSLLSR LAAANPVYGRYDQYKTPMENIGLQDSLLSR TPMENIGLQDSLLSRFDLLFIMLDQMDPEQ K T P S R F 0 1 1 1 0 1 1 1 0 1 3 0 1 0 1 2 1 0 0 0 0 0 15 0 1672.8454 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 464 478 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 5.7294E-06 91.62 2 1.7212 1.7301 NaN 1 Median 1.7212 1.7301 NaN 1 0 Median NaN NaN NaN 0 0 Median 35573000 8284200 27289000 35573000 8284200 27289000 0 0 0 13313 568 13675 35118;35119 54864;54865;54866 54866 421 3 TPNFSTLLCYDR AVYCARFVELVHQQKTPNFSTLLCYDRVFS QQKTPNFSTLLCYDRVFSDIIYTVASCTEN K T P D R V 0 1 1 1 1 0 0 0 0 0 2 0 0 1 1 1 2 0 1 0 0 0 12 0 1485.6922 Q8NI27;A0A0C4DG98;H0Y815;Q6P441 Q8NI27 1008 1019 THOC2 THO complex subunit 2 yes no 2 0.028131 46.844 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13314 1929 13676 35120 54867 54867 1 TPPAPSPFDLPELK ILKEMCDVEQVLSKKTPPAPSPFDLPELKH KTPPAPSPFDLPELKHVATEYQENKAPGKK K T P L K H 1 0 0 1 0 0 1 0 0 0 2 1 0 1 5 1 1 0 0 0 0 0 14 0 1507.7922 Q59HG1;O95239;B3KNC0 Q59HG1 1184 1197 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.00013865 78.692 2 2 1.3416 1.243 30.385 4 Median 0.87876 0.93883 6.5874 2 0 Median 1.9562 1.5824 1.0291 2 0 Median 67384000 32533000 34852000 52989000 27888000 25101000 14395000 4644200 9751200 13315 1803 13677 35121;35122;35123;35124 54868;54869;54870;54871;54872;54873;54874 54871 7 TPPLITDYR YKEQVLEPMLNGTEKTPPLITDYREYHTDT LNGTEKTPPLITDYREYHTDTTVKFVVKMT K T P Y R E 0 1 0 1 0 0 0 0 0 1 1 0 0 0 2 0 2 0 1 0 0 0 9 0 1074.571 P11388 P11388 950 958 TOP2A DNA topoisomerase 2-alpha yes yes 2 6.7382E-06 130.75 2 2 1.0043 1.0161 12.587 4 Median 0.76101 0.89745 10.303 2 0 Median 1.2472 1.0862 2.179 2 0 Median 1894000000 1015600000 878420000 1461000000 824110000 636920000 432990000 191490000 241500000 13316 1471 13678 35125;35126;35127;35128 54875;54876;54877;54878;54879;54880;54881;54882;54883;54884;54885;54886;54887;54888;54889;54890 54880 16 TPQAPASANLVGPR SGTPPTAANYPSSSRTPQAPASANLVGPRS RTPQAPASANLVGPRSAHATAPVNIAGSRT R T P P R S 3 1 1 0 0 1 0 1 0 0 1 0 0 0 3 1 1 0 0 1 0 0 14 0 1377.7365 A0A140VK53;Q9UQ35;O60382 A0A140VK53 2329 2342 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 1.1931E-06 103.08 3 1.4597 1.5227 NaN 1 Median 1.4597 1.5227 NaN 1 0 Median NaN NaN NaN 0 0 Median 55092000 25188000 29905000 55092000 25188000 29905000 0 0 0 13317 619 13679 35129;35130;35131 54891;54892;54893;54894 54891 4 TPQEAITDGLEIVVSPR PLSKTWELSLYELQRTPQEAITDGLEIVVS QEAITDGLEIVVSPRSLHSELMCPICLDML R T P P R S 1 1 0 1 0 1 2 1 0 2 1 0 0 0 2 1 2 0 0 2 0 0 17 0 1823.9629 X6RFN3;Q99496 X6RFN3 27 43 RNF2 E3 ubiquitin-protein ligase RING2 yes no 2 3.9968E-07 96.464 2 1 0.71731 0.72006 13.379 2 Median 0.71731 0.72006 13.379 2 0 Median NaN NaN NaN 0 0 Median 38747000 23032000 15716000 35854000 20138000 15716000 2893300 2893300 0 13318 1992 13680 35132;35133;35134 54895;54896;54897;54898;54899 54897 5 TPQGAVPAYLLDR KMHEKRNTKQKNDEKTPQGAVPAYLLDREG EKTPQGAVPAYLLDREGQSRAKVLSNMIKQ K T P D R E 2 1 0 1 0 1 0 1 0 0 2 0 0 0 2 0 1 0 1 1 0 0 13 0 1399.746 Q5J7U2;O95478;A0A0A0MQZ6 Q5J7U2 81 93 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 9.7672E-09 115.33 2 2 1.0589 1.0357 9.9092 4 Median 0.98606 1.1189 0.11178 2 0 Median 1.1163 0.94389 2.3071 2 0 Median 177510000 88300000 89214000 134160000 67802000 66353000 43358000 20498000 22861000 13319 1427 13681 35135;35136;35137;35138 54900;54901;54902;54903;54904;54905;54906;54907;54908 54900 9 TPQQLWYTHEK LIQNAKKSDIPEKPKTPQQLWYTHEKKVYL EKPKTPQQLWYTHEKKVYLKVRPDEIMRDY K T P E K K 0 0 0 0 0 2 1 0 1 0 1 1 0 0 1 0 2 1 1 0 0 0 11 0 1429.699 E9PKP7;P17480;B4DNQ1;O00164;Q05BZ1 E9PKP7 201 211 UBTF Nucleolar transcription factor 1 yes no 2;3 0.0012613 53.597 3 3 1.3778 1.0767 24.358 5 Median 0.65471 0.72663 3.0281 2 0 Median 1.4486 1.1484 4.1546 3 0 Median 141960000 77490000 64467000 106510000 62666000 43843000 35447000 14824000 20623000 13320 1244 13682 35139;35140;35141;35142;35143;35144 54909;54910;54911;54912;54913;54914;54915;54916;54917;54918;54919 54912 11 TPRPLTSAR QPRGRGQRGARQRRRTPRPLTSARAKAANV ARQRRRTPRPLTSARAKAANVQEPEKKKKR R T P A R A 1 2 0 0 0 0 0 0 0 0 1 0 0 0 2 1 2 0 0 0 0 0 9 1 997.56688 Q6PJJ2;P56182;Q53FR7;Q96J73 Q6PJJ2 441 449 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 3 0.0030558 63.734 1 0.77626 0.80389 NaN 1 Median 0.77626 0.80389 NaN 1 0 Median NaN NaN NaN 0 0 Median 12722000 6576100 6145800 12722000 6576100 6145800 0 0 0 13321 1618 13683 35145 54920 54920 1 TPSASILEEPLTEQNHADCLDSAGPR SDPVQEGRDEFPEHRTPSASILEEPLTEQN TEQNHADCLDSAGPRLNVCDKSSASIGDME R T P P R L 3 1 1 2 1 1 3 1 1 1 3 0 0 0 3 3 2 0 0 0 0 0 26 0 2807.3032 B2RWP5;Q96L73;Q96MN8;Q96DQ7;Q8NB95 B2RWP5 939 964 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 3 0.0036683 23.44 2 2.2746 1.9304 11.459 2 Median NaN NaN NaN 0 0 Median 2.2746 1.9304 11.459 2 0 Median 6478800 2328200 4150600 0 0 0 6478800 2328200 4150600 13322 898 13684 35146;35147 54921;54922;54923 54923 3 TPSGLLINSELEK IVRRRGRPPSTERIKTPSGLLINSELEKPQ IKTPSGLLINSELEKPQKVRKDKEGTPPLT K T P E K P 0 0 1 0 0 0 2 1 0 1 3 1 0 0 1 2 1 0 0 0 0 0 13 0 1399.7559 Q03164;E9PR05;Q9UPD0;Q9Y6P1 Q03164 314 326 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 1.1619E-18 140.57 2 1 1.2474 1.3488 21.342 3 Median 1.0681 1.1566 21.749 2 0 Median 1.8632 1.4945 NaN 1 0 Median 83563000 38898000 44665000 75355000 36496000 38859000 8207400 2402000 5805400 13323 1680 13685 35148;35149;35150 54924;54925;54926;54927 54924 4 TPSLTVFLLGQSAR VPRLKELINISKKPKTPSLTVFLLGQSARD KTPSLTVFLLGQSARDAERAKDILCRLEHT K T P A R D 1 1 0 0 0 1 0 1 0 0 3 0 0 1 1 2 2 0 0 1 0 0 14 0 1488.83 P24928;A0A087WWE2;B4DET1 P24928 1136 1149 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 2 6.5956E-05 90.653 2 2 1.0258 0.9099 15.996 4 Median 1.0368 1.0506 22.417 2 0 Median 1.0258 0.89732 4.0542 2 0 Median 19855000 9765000 10090000 16872000 8310800 8561500 2982900 1454100 1528700 13324 1514 13686 35151;35152;35153;35154 54928;54929;54930;54931;54932 54930 5 TPSSDVLVFDYTK RARYMPQNPHIIATKTPSSDVLVFDYTKHP TKTPSSDVLVFDYTKHPAKPDPSGECNPDL K T P T K H 0 0 0 2 0 0 0 0 0 0 1 1 0 1 1 2 2 0 1 2 0 0 13 0 1470.7242 Q09028;H0YF10;Q6FHQ0;Q16576;E9PC52;Q5JP01 Q6FHQ0 143 155 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 8.4736E-61 203.83 2 2 1.2473 1.2621 18.411 4 Median 0.91605 1.0812 0.50373 2 0 Median 1.7299 1.4865 1.7784 2 0 Median 1087900000 535170000 552740000 873110000 457420000 415690000 214800000 77752000 137050000 13325 1771;1695 13687 35155;35156;35157;35158 54933;54934;54935;54936;54937;54938;54939;54940;54941;54942;54943;54944;54945;54946 54938 14 TPTCQSSTDCSPYAR QPPGKKPFLRNLLPRTPTCQSSTDCSPYAR TPTCQSSTDCSPYARILRSRRSPLLKSGPF R T P A R I 1 1 0 1 2 1 0 0 0 0 0 0 0 0 2 3 3 0 1 0 0 0 15 0 1729.7036 O95235 O95235 857 871 KIF20A Kinesin-like protein KIF20A yes yes 2 8.4492E-71 208.08 2 2 0.8183 0.79902 20.622 4 Median 0.61991 0.66516 2.8733 2 0 Median 1.0997 0.94937 1.3262 2 0 Median 144860000 79063000 65798000 76288000 47425000 28863000 68572000 31638000 36935000 13326 1421 13688 35159;35160;35161;35162 54947;54948;54949;54950;54951;54952;54953;54954 54949 8 TPTQLEGATR CASCWIYWKKYGGLKTPTQLEGATRGTTEP YGGLKTPTQLEGATRGTTEPHSRGHLSRPE K T P T R G 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 3 0 0 0 0 0 10 0 1072.5513 A0A024R534;O94776 A0A024R534 406 415 MTA2 Metastasis-associated protein MTA2 yes no 2 3.3525E-40 192.26 2 2 1.1974 1.1804 27.293 4 Median 0.82678 0.95021 2.6018 2 0 Median 1.8302 1.5149 7.2228 2 0 Median 343550000 179240000 164310000 311520000 167730000 143800000 32023000 11512000 20512000 13327 168 13689 35163;35164;35165;35166 54955;54956;54957;54958;54959;54960;54961 54957 7 TPTQTNGSNVPFK VEGPNNNNPQTSAVRTPTQTNGSNVPFKPR VRTPTQTNGSNVPFKPRGREFSFEAWNAKI R T P F K P 0 0 2 0 0 1 0 1 0 0 0 1 0 1 2 1 3 0 0 1 0 0 13 0 1389.6888 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 662 674 GTF2I General transcription factor II-I yes no 2 0.0012494 75.416 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13328 789 13690 35167;35168 54962;54963 54962 2 TPTSSPASSPLVAK VAFDPEQKPLHGVLKTPTSSPASSPLVAKK KTPTSSPASSPLVAKKPLTTTPRRRPRAMD K T P A K K 2 0 0 0 0 0 0 0 0 0 1 1 0 0 3 4 2 0 0 1 0 0 14 0 1341.714 Q14684 Q14684 728 741 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 1.8578E-29 151.79 2 2 1.0854 1.1207 4.1837 3 Median 1.0793 1.1358 5.8147 2 0 Median 1.4026 1.1207 NaN 1 0 Median 95253000 42048000 53206000 79897000 37923000 41974000 15357000 4124700 11232000 13329 1740 13691 35169;35170;35171;35172 54964;54965;54966;54967;54968;54969;54970 54965 7 TPTTTPPETQQSPHLSLK KYTDEKETEGSKPTKTPTTTPPETQQSPHL TTPPETQQSPHLSLKDITNVSLYPVVKIRR K T P L K D 0 0 0 0 0 2 1 0 1 0 2 1 0 0 4 2 5 0 0 0 0 0 18 0 1962.0058 B5BUA4;Q5FBB7 B5BUA4 425 442 SGOL1 Shugoshin-like 1 yes no 3 1.9138E-05 47.916 1 2 1.8417 1.4882 5.3193 2 Median NaN NaN NaN 0 0 Median 1.8417 1.4882 5.3193 2 0 Median 21022000 13352000 7669500 9252400 9252400 0 11770000 4100000 7669500 13330 1075 13692 35173;35174;35175 54971;54972;54973;54974 54973 4 TPTVIHK AKDFIDLTLSKTQRKTPTVIHKHYQIHRIR TLSKTQRKTPTVIHKHYQIHRIRHFYMRKV K T P H K H 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 2 0 0 1 0 0 7 0 794.46504 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;O60747 Q8N4P8 28 34 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.037867 60.648 1 1.5234 1.5236 NaN 1 Median 1.5234 1.5236 NaN 1 0 Median NaN NaN NaN 0 0 Median 26604000 10770000 15835000 26604000 10770000 15835000 0 0 0 13331 1183 13693 35176 54975 54975 1 TPVEEVPAAIAPFQGR YKLVNNGEKLEFLHKTPVEEVPAAIAPFQG PVEEVPAAIAPFQGRVLIGVGKLLRVYDLG K T P G R V 3 1 0 0 0 1 2 1 0 1 0 0 0 1 3 0 1 0 0 2 0 0 16 0 1680.8835 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 943 958 SF3B3 Splicing factor 3B subunit 3 yes no 2 3.9176E-06 93.561 2 2 1.2914 1.3924 30.191 4 Linear 1.2667 1.3438 5.9303 2 0 Median 0.94842 0.80134 5.1965 2 0 Median 63801000 29216000 34584000 51783000 23591000 28192000 12018000 5625700 6392100 13332 764 13694 35177;35178;35179;35180 54976;54977;54978;54979;54980;54981 54979 6 TPVEPEVAIHR ______________________________ DTGKTPVEPEVAIHRIRITLTSRNVKSLEK K T P H R I 1 1 0 0 0 0 2 0 1 1 0 0 0 0 2 0 1 0 0 2 0 0 11 0 1246.667 P60866;E5RIP1;E5RJX2 P60866 9 19 RPS20 40S ribosomal protein S20 yes no 2;3 1.4432E-17 145.72 5 2 1.2032 1.2703 13.725 6 Median 1.1451 1.3193 6.3495 4 0 Median 1.2187 1.0385 1.6223 2 0 Median 1628100000 733580000 894550000 1616900000 728200000 888690000 11240000 5375600 5864800 13333 1625 13695 35181;35182;35183;35184;35185;35186;35187 54982;54983;54984;54985;54986;54987;54988;54989;54990 54986 9 TPVEVPVGGFK EELYSELQARETFEKTPVEVPVGGFKGRTV TFEKTPVEVPVGGFKGRTVTVWELISSEYF K T P F K G 0 0 0 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 0 3 0 0 11 0 1128.6179 Q15149;D3DWL0 Q15149 3374 3384 PLEC;PLEC1 Plectin yes no 2 0.0011937 69.375 2 2.5695 2.0628 1.6606 2 Median NaN NaN NaN 0 0 Median 2.5695 2.0628 1.6606 2 0 Median 12720000 3237400 9482800 0 0 0 12720000 3237400 9482800 13334 1754 13696 35188;35189 54991;54992;54993 54992 3 TPVPSDIDISR KPGKWMIQYNNLNLKTPVPSDIDISRSCKP LNLKTPVPSDIDISRSCKPKPIGKLAREIG K T P S R S 0 1 0 2 0 0 0 0 0 2 0 0 0 0 2 2 1 0 0 1 0 0 11 0 1198.6194 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 314 324 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 1.5071E-06 112.13 2 1.6569 1.7568 7.0621 2 Median 1.6569 1.7568 7.0621 2 0 Median NaN NaN NaN 0 0 Median 53558000 21264000 32294000 53558000 21264000 32294000 0 0 0 13335 196 13697 35190;35191 54994;54995 54994 2 TPVQYSQQQNSPQK AVGASFPLYEPAKMKTPVQYSQQQNSPQKH KTPVQYSQQQNSPQKHKNKDLYTTGRRESV K T P Q K H 0 0 1 0 0 5 0 0 0 0 0 1 0 0 2 2 1 0 1 1 0 0 14 0 1631.7903 P46013 P46013 347 360 MKI67 Antigen KI-67 yes yes 2 0 388.54 2 2 2.6934 2.5933 22.674 4 Median 1.8995 2.1356 0.32691 2 0 Median 3.84 3.1624 0.92364 2 0 Median 239150000 74409000 164740000 169860000 59661000 110200000 69283000 14748000 54534000 13336 1569 13698 35192;35193;35194;35195 54996;54997;54998;54999;55000;55001;55002;55003 54998 8 TPVTQVNEVTGTLR LQKDVEDFLSPLLGKTPVTQVNEVTGTLRI KTPVTQVNEVTGTLRIKGYFDQELKAWLLE K T P L R I 0 1 1 0 0 1 1 1 0 0 1 0 0 0 1 0 4 0 0 3 0 0 14 0 1513.81 H0YDP7;Q59GE9;A0A024R578;Q13405 H0YDP7 96 109 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 1.2792E-10 110.98 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13337 173 13699 35196;35197 55004;55005 55004 2 TPVVQNAASIVQPSPAHVGQQGLSK KLRQSQLQKENVVQKTPVVQNAASIVQPSP VQPSPAHVGQQGLSKLPSRPGAQGVEPQNL K T P S K L 3 0 1 0 0 4 0 2 1 1 1 1 0 0 3 3 1 0 0 4 0 0 25 0 2512.3398 A0A0U1RRM1;Q8WXI9;B3KSZ4 A0A0U1RRM1 200 224 GATAD2B Transcriptional repressor p66-beta yes no 3 1.6105E-13 81.315 1 2 1.9403 1.5181 37.194 3 Median 0.75671 0.81986 NaN 1 0 Median 1.9667 1.5589 3.7483 2 0 Median 74976000 37273000 37703000 43996000 26920000 17076000 30980000 10354000 20627000 13338 591 13700 35198;35199;35200 55006;55007;55008;55009;55010;55011 55011 6 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLR TSGVFSVTELIQVSRTPVVTGTGPNFSLGE GHLAYDLNPASTGLRRTLPSTSSSGSKRHK R T P L R R 2 1 2 1 0 1 1 5 1 0 5 0 0 1 3 2 4 0 1 2 0 0 32 0 3281.6681 Q6FI30;B7Z4T6;P08651 Q6FI30 228 259 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 3 2.669E-44 119.8 2 2 0.83354 0.84112 3.02 4 Linear 0.75026 0.79588 4.6044 2 0 Median 0.94214 0.81072 1.6583 2 0 Median 135890000 72986000 62906000 71960000 41002000 30957000 63933000 31984000 31949000 13339 1091 13701 35201;35202;35203;35204 55012;55013;55014;55015;55016;55017;55018;55019 55019 8 TPYTDVNIVTIR LYANVRPCVSIEGYKTPYTDVNIVTIRENT GYKTPYTDVNIVTIRENTEGEYSGIEHVIV K T P I R E 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 0 3 0 1 2 0 0 12 0 1390.7456 H0YMU3;B4DJB4;H0YL72;B4DSY4;Q53GF8;P50213;H0YLI6;B7Z9J8;H0YKD0 H0YMU3 107 118 IDH3A Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2 5.0301E-05 94.465 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19175000 0 19175000 19175000 0 19175000 0 0 0 13340 987 13702 35205 55020 55020 1 TPYTIMFGPDK LSKTPELNLDQFHDKTPYTIMFGPDKCGED FHDKTPYTIMFGPDKCGEDYKLHFIFRHKN K T P D K C 0 0 0 1 0 0 0 1 0 1 0 1 1 1 2 0 2 0 1 0 0 0 11 0 1268.6111 P27824;H0Y9Q7;Q16094;D6RGY2;Q6ZP56;D6RFL1;H0Y9H1 P27824 183 193 CANX Calnexin yes no 2 0.00017901 83.869 2 1.1714 1.2252 3.8947 2 Median 1.1714 1.2252 3.8947 2 0 Median NaN NaN NaN 0 0 Median 34886000 14984000 19902000 34886000 14984000 19902000 0 0 0 13341 1526 13703 35206;35207 55021;55022;55023;55024 55024 1292 4 TQASSSFQDSSQPAGK KGADSELSTVPSVTKTQASSSFQDSSQPAG QASSSFQDSSQPAGKAEGIREPKVTGKLKQ K T Q G K A 2 0 0 1 0 3 0 1 0 0 0 1 0 1 1 5 1 0 0 0 0 0 16 0 1624.7329 P46087 P46087 670 685 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 2.0368E-187 283.21 2 2 1.1243 1.1189 6.3945 4 Median 1.031 1.1698 2.9165 2 0 Median 1.2611 1.0604 4.2263 2 0 Median 381090000 183230000 197860000 280550000 137870000 142690000 100530000 45359000 55175000 13342 1570 13704 35208;35209;35210;35211 55025;55026;55027;55028;55029;55030;55031;55032 55027 8 TQEDKEPISENIEVSK KDVVHGLKKGNFFFKTQEDKEPISENIEVS QEDKEPISENIEVSKELQIPALSTRDNENQ K T Q S K E 0 0 1 1 0 1 4 0 0 2 0 2 0 0 1 2 1 0 0 1 0 0 16 1 1844.9004 Q562F6;B7Z7S9 Q562F6 650 665 SGOL2 Shugoshin-like 2 yes no 2 0.003402 65.809 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13343 1795 13705 35212 55033 55033 1 TQEPAGSLEENNSDK DMQNILAVLLSQLMKTQEPAGSLEENNSDK TQEPAGSLEENNSDKNSGPQGPRRTPTMPQ K T Q D K N 1 0 2 1 0 1 3 1 0 0 1 1 0 0 1 2 1 0 0 0 0 0 15 0 1617.7118 Q9NYV4;H0YLT2 Q9NYV4 1220 1234 CDK12 Cyclin-dependent kinase 12 yes no 2 0.00081201 67.456 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1048600 0 1048600 1048600 0 1048600 0 0 0 13344 2085 13706 35213 55034 55034 1 TQGFILNTK TELELQMKLWMYNKKTQGFILNTKINMPHE WMYNKKTQGFILNTKINMPHEDCITALCFC K T Q T K I 0 0 1 0 0 1 0 1 0 1 1 1 0 1 0 0 2 0 0 0 0 0 9 0 1020.5604 A8K330;Q8IWA0 A8K330 428 436 WDR75 WD repeat-containing protein 75 yes no 2 0.00017706 93.267 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33202000 33202000 0 33202000 33202000 0 0 0 0 13345 716 13707 35214 55035 55035 1 TQGFLALFSGDTGEIK VHTVSLHEIDVINSRTQGFLALFSGDTGEI QGFLALFSGDTGEIKSEVREQINAKVAEWR R T Q I K S 1 0 0 1 0 1 1 3 0 1 2 1 0 2 0 1 2 0 0 0 0 0 16 0 1682.8516 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 254 269 RUVBL2 RuvB-like 2 yes no 2 1.0308E-56 180.61 2 2 1.0078 0.97091 5.1057 4 Median 0.82515 0.92704 0.76946 2 0 Median 1.2333 1.0124 0.14877 2 0 Median 203540000 102910000 100630000 139570000 73463000 66102000 63979000 29448000 34531000 13346 2120 13708 35215;35216;35217;35218 55036;55037;55038;55039;55040;55041;55042 55040 7 TQGQDSLEAQLSSLESSR NEPKMDNCHSVSRVKTQGQDSLEAQLSSLE QDSLEAQLSSLESSRRVHTSTPSDKNLLDT K T Q S R R 1 1 0 1 0 3 2 1 0 0 3 0 0 0 0 5 1 0 0 0 0 0 18 0 1934.9181 Q03164 Q03164 2791 2808 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.00059584 43.184 1 2 1.8693 1.5323 18.761 3 Median 1.1601 1.1616 NaN 1 0 Median 1.956 1.5955 5.7157 2 0 Median 29603000 10547000 19056000 6837800 2682300 4155500 22765000 7864600 14900000 13347 1680 13709 35219;35220;35221 55043;55044;55045;55046;55047 55045 5 TQGVPAVLK PTVPGSSISVPTAARTQGVPAVLKVTGPQA VPTAARTQGVPAVLKVTGPQATTGTPLVTM R T Q L K V 1 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 2 0 0 9 0 911.54402 A6NEM2;P51610;Q05C05 A6NEM2 480 488 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.030744 45.738 1 0.68497 0.72054 NaN 1 Median 0.68497 0.72054 NaN 1 0 Median NaN NaN NaN 0 0 Median 30594000 18259000 12334000 30594000 18259000 12334000 0 0 0 13348 680 13710 35222 55048 55048 1 TQHLQELFSR VVNSYPLAHKVFEEKTQHLQELFSRIPFNQ VFEEKTQHLQELFSRIPFNQALVFSNLHSR K T Q S R I 0 1 0 0 0 2 1 0 1 0 2 0 0 1 0 1 1 0 0 0 0 0 10 0 1257.6466 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6 Q8TDR3 297 306 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 3 0.003555 51.841 1 2.2721 2.3332 NaN 1 Median 2.2721 2.3332 NaN 1 0 Median NaN NaN NaN 0 0 Median 10121000 3088800 7032000 10121000 3088800 7032000 0 0 0 13349 1901 13711 35223 55049 55049 1 TQIAPGSQTVLGIGPGPADLIDK KMLGLTVSLIQDAGRTQIAPGSQTVLGIGP TVLGIGPGPADLIDKVTGHLKLY_______ R T Q D K V 2 0 0 2 0 2 0 4 0 3 2 1 0 0 3 1 2 0 0 1 0 0 23 0 2247.2111 Q96ME4;J3KQ48;Q9Y3E5 Q96ME4 149 171 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 2 0.0015257 32.926 2 1.0344 0.82034 1.2586 2 Median NaN NaN NaN 0 0 Median 1.0344 0.82034 1.2586 2 0 Median 25967000 12447000 13520000 0 0 0 25967000 12447000 13520000 13350 1329 13712 35224;35225 55050;55051;55052 55050 3 TQIVTEIISEIR LVERLLHIIIDDNKRTQIVTEIISEIRAPI NKRTQIVTEIISEIRAPIVTVGVNNDPADV R T Q I R A 0 1 0 0 0 1 2 0 0 4 0 0 0 0 0 1 2 0 0 1 0 0 12 0 1400.7875 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 459 470 NCAPG Condensin complex subunit 3 no no 2 1.1589E-17 138.25 2 3 1.4964 1.2899 22.935 5 Median 0.76945 0.87648 1.0433 2 0 Median 1.5437 1.3471 2.6813 3 0 Median 437190000 219030000 218150000 299630000 165740000 133880000 137560000 53291000 84270000 13351 1995;1289 13713 35226;35227;35228;35229;35230 55053;55054;55055;55056;55057;55058;55059;55060;55061;55062 55056 9 TQLEELEDELQATEDAK EKSKRALEQQVEEMKTQLEELEDELQATED LEELEDELQATEDAKLRLEVNLQAMKAQFE K T Q A K L 2 0 0 2 0 2 5 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 17 0 1960.9113 A0A024R1N1;P35579;A0A0U4BW16;Q6ZNL4;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;O14729;O14794;Q66K75;P35580 A0A024R1N1 1539 1555 MYH9;FLJ00279;MYH11;MYH10 Myosin-9;Myosin-11;Myosin-10 no no 2 8.827E-166 267.93 2 3 2.5327 2.0877 4.4504 5 Median 1.8099 2.0831 0.30961 2 0 Median 2.646 2.2119 5.781 3 0 Plateau 498560000 166530000 332040000 385090000 136210000 248890000 113470000 30320000 83151000 13352 81;1544 13714 35231;35232;35233;35234;35235 55063;55064;55065;55066;55067;55068;55069;55070;55071;55072;55073;55074 55066 12 TQLNLLLDK KAGKLSFISVGNKFKTQLNLLLDKLRSTGA VGNKFKTQLNLLLDKLRSTGASFIRCIKPN K T Q D K L 0 0 1 1 0 1 0 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 9 0 1056.6179 A0A0A0MRM8;A0A0D9SGC1;E7EW20;Q9UM54 A0A0A0MRM8 649 657 MYO6 Unconventional myosin-VI yes no 2 0.017039 53.327 1 0.94508 1.006 NaN 1 Median 0.94508 1.006 NaN 1 0 Median NaN NaN NaN 0 0 Median 15916000 8217700 7698100 15916000 8217700 7698100 0 0 0 13353 467 13715 35236 55075 55075 1 TQLQHSLPLLLICDNLR GIFAKPDHVKMTYPKTQLQHSLPLLLICDN LQHSLPLLLICDNLRDPGNLGTILRSAAGA K T Q L R D 0 1 1 1 1 2 0 0 1 1 6 0 0 0 1 1 1 0 0 0 0 0 17 0 2033.1092 Q9HC36;I3L443 Q9HC36 202 218 RNMTL1 rRNA methyltransferase 3, mitochondrial yes no 3 0.016579 43.454 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1658100 1658100 0 0 0 0 1658100 1658100 0 13354 2051 13716 35237;35238 55076;55077 55076 2 TQLYEYLQNR ILHLCTQVIEISEYRTQLYEYLQNRMMAIA ISEYRTQLYEYLQNRMMAIAPNVTVMVGEL R T Q N R M 0 1 1 0 0 2 1 0 0 0 2 0 0 0 0 0 1 0 2 0 0 0 10 0 1326.6568 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 269 278 NOP58 Nucleolar protein 58 yes no 2 1.5398E-09 131.41 2 2 0.85577 0.88944 3.7585 4 Linear 0.75958 0.889 0.29549 2 0 Median 0.96056 0.83311 0.38132 2 0 Median 697720000 384760000 312960000 565000000 316540000 248460000 132720000 68222000 64502000 13355 2129 13717 35239;35240;35241;35242 55078;55079;55080;55081;55082;55083;55084;55085;55086;55087;55088 55081 11 TQMAEVLPSPR QVGLPGKGGKAKGKKTQMAEVLPSPRGQRV KGKKTQMAEVLPSPRGQRVIPRITIEMKAE K T Q P R G 1 1 0 0 0 1 1 0 0 0 1 0 1 0 2 1 1 0 0 1 0 0 11 0 1227.6282 P11388 P11388 1205 1215 TOP2A DNA topoisomerase 2-alpha yes yes 2 4.203E-23 165.39 3 3 1.1505 1.1291 23.592 4 Median 1.0032 1.186 NaN 1 0 Median 1.3195 1.0779 26.221 3 0 Median 442190000 150900000 291290000 398100000 129790000 268310000 44085000 21108000 22977000 13356 1471 13718;13719 35243;35244;35245;35246;35247;35248 55089;55090;55091;55092;55093;55094;55095;55096;55097;55098 55090 1213 10 TQMLDQEELLASTR DEEINQQSQLVEKLKTQMLDQEELLASTRR KTQMLDQEELLASTRRDQDNMQAELNRLQA K T Q T R R 1 1 0 1 0 2 2 0 0 0 3 0 1 0 0 1 2 0 0 0 0 0 14 0 1633.7981 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89 V9HW29 451 464 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.006171 48.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13357 1186 13720 35249 55099 55099 903 1 TQNVLGLQK PALSTRDNENQCDYRTQNVLGLQKQITNMY NQCDYRTQNVLGLQKQITNMYPVQQNESKV R T Q Q K Q 0 0 1 0 0 2 0 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 999.57129 Q562F6;B7Z7S9 Q562F6 685 693 SGOL2 Shugoshin-like 2 yes no 2 0.008633 60.91 1 1.0687 1.145 NaN 1 Median 1.0687 1.145 NaN 1 0 Median NaN NaN NaN 0 0 Median 21265000 10192000 11072000 21265000 10192000 11072000 0 0 0 13358 1795 13721 35250 55100 55100 1 TQPAVATAATAAEK GGSLESDGCPKEPAKTQPAVATAATAAEKY KTQPAVATAATAAEKYKHRGEGERKDIVSS K T Q E K Y 6 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 3 0 0 1 0 0 14 0 1328.6936 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E9LUH3;C6KG45;A0A0S2Z401;A0A075BRI2;A0A075BRJ5;C6FGV0;A0A0S2Z3Y9;A0A0S2Z400;Q59FJ6 A0A140VKC4 448 461 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.045665 26.703 1 1.0003 0.78852 NaN 1 Median NaN NaN NaN 0 0 Median 1.0003 0.78852 NaN 1 0 Median 3085000 1544900 1540100 0 0 0 3085000 1544900 1540100 13359 623 13722 35251 55101 55101 1 TQPDGTSVPGEPASPISQR CEEGTPLSITSKLPRTQPDGTSVPGEPASP GTSVPGEPASPISQRLPPKVESLESLYFTP R T Q Q R L 1 1 0 1 0 2 1 2 0 1 0 0 0 0 4 3 2 0 0 1 0 0 19 0 1922.9334 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1730 1748 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0022768 57.434 4 1 2.0779 1.724 NaN 1 Median NaN NaN NaN 0 0 Median 2.0779 1.724 NaN 1 0 Median 5747500 1787200 3960300 0 0 0 5747500 1787200 3960300 13360 186;1747 13723 35252;35253;35254;35255;35256 55102;55103;55104;55105;55106 55103 5 TQPFQAQPPQQK LMAYGVEPALCDRLRTQPFQAQPPQQKAAV RLRTQPFQAQPPQQKAAVLAFLVHELNGST R T Q Q K A 1 0 0 0 0 5 0 0 0 0 0 1 0 1 3 0 1 0 0 0 0 0 12 0 1396.7099 J3QK86;J3KPG5;F8VU39;Q9UIF9 J3QK86 928 939 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.00054926 69.338 2 1 0.92953 0.94441 35.296 3 Median 0.88685 0.90933 5.3532 2 0 Median 2.1128 1.6699 NaN 1 0 Median 52369000 25360000 27008000 47203000 23497000 23706000 5165800 1863700 3302100 13361 1260 13724 35257;35258;35259 55107;55108;55109;55110;55111;55112 55111 6 TQPMTAQAASYR AYRAQPSASLGVGYRTQPMTAQAASYRAQP GYRTQPMTAQAASYRAQPSVSLGAPYRGQL R T Q Y R A 3 1 0 0 0 2 0 0 0 0 0 0 1 0 1 1 2 0 1 0 0 0 12 0 1323.6241 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 263 274 RBM14 RNA-binding protein 14 yes no 2 0.00039161 76.143 2 1.715 1.6897 NaN 1 Median 1.715 1.6897 NaN 1 0 Median NaN NaN NaN 0 0 Median 21066000 6148600 14918000 21066000 6148600 14918000 0 0 0 13362 571 13725 35260;35261 55113;55114;55115;55116 55115 424 4 TQPTVINNLK VKYEAAGEAVKTLKKTQPTVINNLKKGAVE KTLKKTQPTVINNLKKGAVEDVISRNEIQG K T Q L K K 0 0 2 0 0 1 0 0 0 1 1 1 0 0 1 0 2 0 0 1 0 0 10 0 1126.6346 Q6NUN2;A3F769;O15226;A3F768;A2I829 Q6NUN2 514 523 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.0017496 72.23 2 0.80666 0.87015 11.386 2 Median 0.80666 0.87015 11.386 2 0 Median NaN NaN NaN 0 0 Median 80583000 45450000 35133000 80583000 45450000 35133000 0 0 0 13363 655 13726 35262;35263 55117;55118;55119;55120;55121 55121 5 TQQAAQANITLQEQIEAIHK EEKVTWDGHSGSMARTQQAAQANITLQEQI QANITLQEQIEAIHKAKGLVPEDDTKEKIG R T Q H K A 4 0 1 0 0 5 2 0 1 3 1 1 0 0 0 0 2 0 0 0 0 0 20 0 2234.1655 A0A024R1K8;Q15459;B4E091;H7C1L2 A0A024R1K8 512 531 SF3A1 Splicing factor 3A subunit 1 yes no 3 0.010408 43.12 2 0.59369 0.60077 NaN 1 Median 0.59369 0.60077 NaN 1 0 Median NaN NaN NaN 0 0 Median 4736600 2999700 1736900 4736600 2999700 1736900 0 0 0 13364 79 13727 35264;35265 55122;55123 55122 2 TQRPADVIFATVR MSKDSLLGDKGQTARTQRPADVIFATVREL ARTQRPADVIFATVRELVSGGRSVRFSEAE R T Q V R E 2 2 0 1 0 1 0 0 0 1 0 0 0 1 1 0 2 0 0 2 0 0 13 1 1472.81 B3KUD7;B4DDF5;C6EMX8;B2RBA6;A0A0S2Z4A5;P33993;Q9H4N9 B3KUD7 547 559 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 3 0.001043 61.212 2 1.0234 1.1122 NaN 1 Median 1.0234 1.1122 NaN 1 0 Median NaN NaN NaN 0 0 Median 41219000 23102000 18117000 41219000 23102000 18117000 0 0 0 13365 560 13728 35266;35267 55124;55125 55124 2 TQSRPGGPPNPPGPSPK NGSPIDTLREILKRRTQSRPGGPPNPPGPS SRPGGPPNPPGPSPKALAKMMGGAGPGSSL R T Q P K A 0 1 1 0 0 1 0 3 0 0 0 1 0 0 7 2 1 0 0 0 0 0 17 1 1669.8536 B3KR89;B9EGQ5;M0QXA7;O95785 B3KR89 24 40 WIZ Protein Wiz yes no 3 0.037439 15.422 1 0.79453 0.72855 NaN 1 Median NaN NaN NaN 0 0 Median 0.79453 0.72855 NaN 1 0 Median 1029800 540770 489020 0 0 0 1029800 540770 489020 13366 932 13729 35268 55126 55126 1 TQSSASLAASYAAQQHPQAAASYR AYGAQPSATLAAPYRTQSSASLAASYAAQQ SYAAQQHPQAAASYRGQPGNAYDGAGQPSA R T Q Y R G 8 1 0 0 0 4 0 0 1 0 1 0 0 0 1 5 1 0 2 0 0 0 24 0 2464.1731 A0A0S2Z4Z0;Q96PK6;Q59GV2;B4DNG4 A0A0S2Z4Z0 518 541 RBM14 RNA-binding protein 14 yes no 3 1.4178E-12 73.036 2 2 1.2528 1.1855 37.051 4 Median 1.5568 1.6421 7.8376 2 0 Median 1.0472 0.87054 5.4202 2 0 Median 71642000 32882000 38760000 53215000 23273000 29942000 18427000 9609600 8817900 13367 571 13730 35269;35270;35271;35272 55127;55128;55129;55130;55131;55132;55133;55134;55135;55136 55129 10 TQSSLVEAFNK TATGPSTGGGTVISRTQSSLVEAFNKILNS VISRTQSSLVEAFNKILNSKNLLPAYRPNL R T Q N K I 1 0 1 0 0 1 1 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 11 0 1222.6194 Q8N1G0;H0Y5I5;F8WCX2 Q8N1G0 493 503 ZNF687 Zinc finger protein 687 yes no 2 0.015285 46.406 1 0.88229 0.90758 NaN 1 Median 0.88229 0.90758 NaN 1 0 Median NaN NaN NaN 0 0 Median 17986000 9198500 8787700 17986000 9198500 8787700 0 0 0 13368 1905 13731 35273 55137 55137 1 TQTAIASEDMPNTLTEAEK QFLRDLDDFQSWLSRTQTAIASEDMPNTLT IASEDMPNTLTEAEKLLTQHENIKNEIDNY R T Q E K L 3 0 1 1 0 1 3 0 0 1 1 1 1 0 1 1 4 0 0 0 0 0 19 0 2048.9572 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 995 1013 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 1.8743E-08 92.457 2 1.9219 1.9524 6.4756 2 Median 1.9219 1.9524 6.4756 2 0 Median NaN NaN NaN 0 0 Median 19268000 6615400 12653000 19268000 6615400 12653000 0 0 0 13369 415 13732 35274;35275 55138;55139;55140;55141;55142 55141 305 5 TQTLDQENQQLQDQLR QLCDLNAELKRCRERTQTLDQENQQLQDQL QTLDQENQQLQDQLRDAQQQVKALGTERTT R T Q L R D 0 1 1 2 0 6 1 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 16 0 1956.9501 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 157 172 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 1.6238E-18 125.61 2 0.68163 0.70604 NaN 1 Median 0.68163 0.70604 NaN 1 0 Median NaN NaN NaN 0 0 Median 30489000 12826000 17663000 30489000 12826000 17663000 0 0 0 13370 371 13733 35276;35277 55143;55144;55145;55146 55146 4 TQTPAAQPVPR GMTLKSVTEGASARKTQTPAAQPVPRPVSQ SARKTQTPAAQPVPRPVSQARPPPNQKKGS K T Q P R P 2 1 0 0 0 2 0 0 0 0 0 0 0 0 3 0 2 0 0 1 0 0 11 0 1164.6251 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 332 342 CDC73 Parafibromin yes no 2 0.00047771 75.378 1 2 1.53 1.5052 4.8609 2 Median 1.3569 1.5578 NaN 1 0 Median 1.7252 1.4543 NaN 1 0 Median 56362000 22696000 33666000 52288000 20530000 31758000 4073300 2165500 1907800 13371 1851 13734 35278;35279;35280 55147;55148;55149;55150 55148 4 TQTPPLGQTPQLGLK QPQITMIPPSAQPPRTQTPPLGQTPQLGLK TQTPPLGQTPQLGLKTNPPLIQEKPAKTSK R T Q L K T 0 0 0 0 0 3 0 2 0 0 3 1 0 0 3 0 3 0 0 0 0 0 15 0 1577.8777 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89;E9PKF8 D3DQV9 506 520 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0002191 72.496 2 1 3.1002 3.2636 40.921 3 Plateau 3.1002 3.2636 34.883 2 0 Median 2.3827 1.8539 NaN 1 0 Median 69122000 18719000 50404000 65749000 17757000 47992000 3373600 961340 2412200 13372 1054 13735 35281;35282;35283 55151;55152;55153;55154;55155;55156 55154 6 TQTSDPAMLPTMIGLLAEAGVR PEVPLRRDLPLLLFRTQTSDPAMLPTMIGL MLPTMIGLLAEAGVRLLSYQTSLVSDGETW R T Q V R L 3 1 0 1 0 1 1 2 0 1 3 0 2 0 2 1 3 0 0 1 0 0 22 0 2271.1603 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 470 491 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 6.7829E-19 95.428 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19786000 0 19786000 19786000 0 19786000 0 0 0 13373 1382 13736 35284;35285 55157;55158;55159 55159 1053;1054 3 TQVEASEESALNHLQNPGDAAEGR RSKLWEMDNMLIQIKTQVEASEESALNHLQ ALNHLQNPGDAAEGRAAKRCEKSESS____ K T Q G R A 4 1 2 1 0 2 4 2 1 0 2 0 0 0 1 2 1 0 0 1 0 0 24 0 2522.1633 A0A087WTY9;B3KQA0;Q9Y605 A0A087WTY9 69 92 MRFAP1 MORF4 family-associated protein 1 yes no 3 5.7608E-12 64.488 2 2 1.7037 1.0464 51.348 4 Linear 1.6901 1.6903 13.413 2 0 Median 0.81625 0.70183 2.0797 2 0 Median 39387000 18272000 21115000 33844000 15351000 18492000 5543900 2921100 2622800 13374 407 13737 35286;35287;35288;35289 55160;55161;55162;55163 55161 4 TQVELLEAPTPALK DNYFLVGPYTEQGVRTQVELLEAPTPALKR RTQVELLEAPTPALKRTLDSMNSKGCKVYF R T Q L K R 2 0 0 0 0 1 2 0 0 0 3 1 0 0 2 0 2 0 0 1 0 0 14 0 1508.845 P13807;Q53ER0;A8K6K7 P13807 75 88 GYS1 Glycogen [starch] synthase, muscle yes no 2 5.0492E-05 93.011 2 0.42788 0.35581 5.7758 2 Median NaN NaN NaN 0 0 Median 0.42788 0.35581 5.7758 2 0 Median 85370000 60237000 25133000 0 0 0 85370000 60237000 25133000 13375 1479 13738 35290;35291 55164;55165;55166;55167 55164 4 TQVTVQYMQDR LRRNGTLPWLRPDSKTQVTVQYMQDRGAVL PDSKTQVTVQYMQDRGAVLPIRVHTIVISV K T Q D R G 0 1 0 1 0 3 0 0 0 0 0 0 1 0 0 0 2 0 1 2 0 0 11 0 1367.6503 A0A140VJP5;P31153;B4DEX8 A0A140VJP5 182 192 MAT2A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase yes no 2 3.2999E-05 82.261 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7308800 0 7308800 7308800 0 7308800 0 0 0 13376 606 13739 35292;35293;35294;35295 55168;55169;55170;55171;55172 55172 460 5 TQVVAGTNYYIK KTNETYGKLEAVQYKTQVVAGTNYYIKVRA QYKTQVVAGTNYYIKVRAGDNKYMHLKVFK K T Q I K V 1 0 1 0 0 1 0 1 0 1 0 1 0 0 0 0 2 0 2 2 0 0 12 0 1355.7085 P01040;C9J0E4 P01040 45 56 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes no 2 0.0080485 59.542 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13377 1438 13740 35296;35297 55173;55174 55174 2 TRDELDQFLDK VGYDLDGRRIYKPLRTRDELDQFLDKMDDP KPLRTRDELDQFLDKMDDPDYWRTVQDPMT R T R D K M 0 1 0 3 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 11 1 1378.6729 Q14137;B2RDN4;A8K3R2;B4DEN9;A0A075B729 Q14137 165 175 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.0004588 97.779 2 2 1.1196 1.1245 9.2103 4 Median 0.86331 1.0264 8.7041 2 0 Median 1.3585 1.1721 1.6571 2 0 Median 206390000 100320000 106070000 153950000 78990000 74960000 52436000 21326000 31110000 13378 1726 13741 35298;35299;35300;35301 55175;55176;55177;55178;55179;55180;55181;55182 55176 8 TREPLILEEER VVSSSHDKSLRLWERTREPLILEEEREMER LWERTREPLILEEEREMEREAEYEESVAKE R T R E R E 0 2 0 0 0 0 4 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 11 1 1383.7358 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 705 715 WDR3 WD repeat-containing protein 3 yes no 3 0.0011896 61.375 1 0.75286 0.8361 NaN 1 Median 0.75286 0.8361 NaN 1 0 Median NaN NaN NaN 0 0 Median 23969000 13029000 10939000 23969000 13029000 10939000 0 0 0 13379 1827 13742 35302 55183;55184 55184 2 TREPVTDNVEK GIDEVIVPLPTWNARTREPVTDNVEKFAIE WNARTREPVTDNVEKFAIETELIYKYSPFR R T R E K F 0 1 1 1 0 0 2 0 0 0 0 1 0 0 1 0 2 0 0 2 0 0 11 1 1286.6466 Q9Y6X9 Q9Y6X9 154 164 MORC2 MORC family CW-type zinc finger protein 2 yes yes 2 0.0025231 76.143 1 0.91911 1.0003 NaN 1 Median 0.91911 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median 9705000 4963200 4741800 9705000 4963200 4741800 0 0 0 13380 2154 13743 35303 55185 55185 1 TRLEQEIATYR MEQQNQEYKILLDVKTRLEQEIATYRRLLE LDVKTRLEQEIATYRRLLEGEDAHLSSSQF K T R Y R R 1 2 0 0 0 1 2 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 11 1 1378.7205 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;CON__A2A4G1;Q13092;CON__Q9Z2K1;CON__Q3ZAW8;A8MT21;CON__P35900;CON__Q9D312;P35900;CON__Q04695;Q04695;F5GWP8;Q14666;CON__P08779;P08779;CON__Q61782 CON__P02533 406 416 KRT14;K14;KRT15;KRT20;KRT17;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16 no no 2;3 1.8597E-16 179.19 2 2 0.092097 0.083397 115.45 3 Median 0.009854 0.011712 NaN 1 0 Median 0.098269 0.086427 5.047 2 0 Median 299220000 295660000 3561500 287730000 285460000 2274100 11487000 10200000 1287400 + 13381 1150;1159;1168;1176 13744 35304;35305;35306;35307 55186;55187;55188;55189 55186 4 TRPSSTVIK LPKKAPPKAKTPAKKTRPSSTVIKKPSGGS KTPAKKTRPSSTVIKKPSGGSSKKPATSAR K T R I K K 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 2 2 0 0 1 0 0 9 1 987.57129 Q5SSJ5;B4E0N8 Q5SSJ5 509 517 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.00013124 114.5 2 2 0.79874 0.81054 9.5667 4 Median 0.72432 0.86916 6.2942 2 0 Median 0.88142 0.75582 6.3045 2 0 Median 674490000 385690000 288800000 638590000 367160000 271430000 35903000 18528000 17375000 13382 1817 13745 35308;35309;35310;35311 55190;55191;55192;55193 55191 4 TRPVVAAGAVGLAQR GDGAGFKVAMGAFDKTRPVVAAGAVGLAQR TRPVVAAGAVGLAQRALDEATKYALERKTF K T R Q R A 4 2 0 0 0 1 0 2 0 0 1 0 0 0 1 0 1 0 0 3 0 0 15 1 1464.8525 B7Z9I1;B4DWX6;A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B4DVB1;A0A0S2Z3A5;B4DJE7;B4DVE0;H0YDT5 B7Z9I1 244 258 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 3 2.5518E-07 83.106 1 2.8035 3.0483 NaN 1 Median 2.8035 3.0483 NaN 1 0 Median NaN NaN NaN 0 0 Median 48444000 12778000 35667000 48444000 12778000 35667000 0 0 0 13383 545 13746 35312 55194 55194 1 TSAQVAVFHLQEIAEDELAR DPLGVERTPSGRVRRTSAQVAVFHLQEIAE AVFHLQEIAEDELARDWTKRRMKDDLVPET R T S A R D 4 1 0 1 0 2 3 0 1 1 2 0 0 1 0 1 1 0 0 2 0 0 20 0 2226.1281 Q96KM6 Q96KM6 685 704 ZNF512B Zinc finger protein 512B yes yes 3 4.6765E-07 73.783 1 0.80298 0.81178 NaN 1 Median 0.80298 0.81178 NaN 1 0 Median NaN NaN NaN 0 0 Median 9767300 4701400 5065800 9767300 4701400 5065800 0 0 0 13384 1976 13747 35313 55195 55195 1 TSAQVVLDGLVDK LHIVALIAQKGNFSKTSAQVVLDGLVDKIG SKTSAQVVLDGLVDKIGDVKCGNNAKEAMT K T S D K I 1 0 0 2 0 1 0 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 13 0 1343.7296 Q14008 Q14008 677 689 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.016752 49.632 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6584800 0 6584800 6584800 0 6584800 0 0 0 13385 1725 13748 35314;35315 55196;55197 55197 2 TSASLEMNQGVSEER HQLESSLSPVEAFAKTSASLEMNQGVSEER TSASLEMNQGVSEERIHLGSSPKKGGNCDL K T S E R I 1 1 1 0 0 1 3 1 0 0 1 0 1 0 0 3 1 0 0 1 0 0 15 0 1636.7363 Q4G1A1;A8K3X3;Q9H410;Q5JW53 Q4G1A1 22 36 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 3.255E-22 142.1 2 0.95914 0.97649 7.5132 2 Median 0.95914 0.97649 7.5132 2 0 Median NaN NaN NaN 0 0 Median 20198000 10524000 9674100 20198000 10524000 9674100 0 0 0 13386 727 13749 35316;35317 55198;55199;55200;55201;55202 55202 563 5 TSDFNTFLAQEGCTK ______________________________ TSDFNTFLAQEGCTKGKHMWTKKDAGKKVV K T S T K G 1 0 1 1 1 1 1 1 0 0 1 1 0 2 0 1 3 0 0 0 0 0 15 0 1717.7618 E9PHZ2;A0A024R3C3;A0A024R394;Q9UHD1 E9PHZ2 11 25 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 2 0.0015908 56.951 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13387 130 13750 35318 55203 55203 1 TSDLIVLGLPWK TDASSAVKVKRAVQKTSDLIVLGLPWKTTE VQKTSDLIVLGLPWKTTEQDLKEYFSTFGE K T S W K T 0 0 0 1 0 0 0 1 0 1 3 1 0 0 1 1 1 1 0 1 0 0 12 0 1340.7704 A0A087WX29;B4DRW3;A0A0A0N0L3;A0A024R4E2;Q13148;A0A087WXQ5;A0A087WV68;B1AKP7;G3V162;A0A087X260;A0A087WYY0;K7EJM5;A0A0A0N0N3;A0A0A0N0M3;K7EN94 A0A087WX29 103 114 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2 6.4581E-18 143.7 2 1.1409 1.1834 8.7842 2 Median 1.1409 1.1834 8.7842 2 0 Median NaN NaN NaN 0 0 Median 62541000 27646000 34896000 62541000 27646000 34896000 0 0 0 13388 153 13751 35319;35320 55204;55205;55206;55207;55208 55205 5 TSEIYVHR DIPKVQHVIHYQVPRTSEIYVHRSGRTARA IHYQVPRTSEIYVHRSGRTARATNEGLGLM R T S H R S 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 1 1 0 0 8 0 1003.5087 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0;B4DGI6 B4DKV2 574 581 DDX24 ATP-dependent RNA helicase DDX24 yes no 2;3 0.00099026 130.77 3 1 0.58255 0.6292 22.674 3 Median 0.58255 0.6292 22.674 3 0 Median NaN NaN NaN 0 0 Median 77573000 34668000 42905000 76145000 33240000 42905000 1428100 1428100 0 13389 993 13752 35321;35322;35323;35324 55209;55210;55211;55212;55213;55214 55209 6 TSESVLSVEHGQPVESVLLFPSGGLLVSAGGR ITGSYDHTVKMFDARTSESVLSVEHGQPVE LLFPSGGLLVSAGGRYVKVWDMLKGGQLLV R T S G R Y 1 1 0 0 0 1 3 5 1 0 5 0 0 1 2 6 1 0 0 5 0 0 32 0 3207.6776 Q8TED0;H0Y8P4 Q8TED0 196 227 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 3 3.3664E-31 96.46 2 2 0.98098 0.96077 6.3065 4 Median 0.90397 0.9743 8.4771 2 0 Median 1.1033 0.95933 6.7121 2 0 Median 338750000 160080000 178670000 83787000 42522000 41265000 254960000 117560000 137400000 13390 1936 13753 35325;35326;35327;35328 55215;55216;55217;55218;55219;55220;55221 55220 7 TSFEDGSGECEVFCK SITDLVPYSITLRWKTSFEDGSGECEVFCK TSFEDGSGECEVFCKNHPAPFSKVITFHKK K T S C K N 0 0 0 1 2 0 3 2 0 0 0 1 0 2 0 2 1 0 0 1 0 0 15 0 1750.6815 B3KNM0;Q53ZP9;A0A140VKE7;B4DZR0;O95757;D6RJ96;E9PDE8;B4DXT2 B3KNM0 408 422 HSPA4L Heat shock 70 kDa protein 4L yes no 2 1.3569E-15 119.45 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8475900 0 8475900 8475900 0 8475900 0 0 0 13391 624 13754 35329;35330 55222;55223;55224 55224 3 TSFEIAELK LEVKTREKLEAAKKKTSFEIAELKERLKAS EAAKKKTSFEIAELKERLKASRETINCLKN K T S L K E 1 0 0 0 0 0 2 0 0 1 1 1 0 1 0 1 1 0 0 0 0 0 9 0 1036.5441 O95619;F8W0J4 O95619 190 198 YEATS4 YEATS domain-containing protein 4 yes no 2 0.0049758 67.897 2 0.61952 0.63704 NaN 1 Median 0.61952 0.63704 NaN 1 0 Median NaN NaN NaN 0 0 Median 18085000 14293000 3792300 18085000 14293000 3792300 0 0 0 13392 1430 13755 35331;35332 55225;55226;55227 55227 3 TSFFLGEVGNAAK GLYEDCSSCFQAMGKTSFFLGEVGNAAKMM GKTSFFLGEVGNAAKMMLIVNMVQGSFMAT K T S A K M 2 0 1 0 0 0 1 2 0 0 1 1 0 2 0 1 1 0 0 1 0 0 13 0 1339.6772 D3DUE6;K7EMM8;D3DUE7;Q49A26 D3DUE7 439 451 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2 2.5978E-10 108.43 3 2 1.861 1.5187 2.972 2 Median NaN NaN NaN 0 0 Median 1.861 1.5187 2.972 2 0 Median 71718000 19937000 51781000 13732000 0 13732000 57986000 19937000 38049000 13393 1194;1193 13756 35333;35334;35335;35336;35337 55228;55229;55230;55231;55232;55233 55230 6 TSFFQALGITTK EVTVPAQNTGLGPEKTSFFQALGITTKISR PEKTSFFQALGITTKISRGTIEILSDVQLI K T S T K I 1 0 0 0 0 1 0 1 0 1 1 1 0 2 0 1 3 0 0 0 0 0 12 0 1312.7027 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VU65;Q6NSF2;F8VWS0;F8VW21;G3V210;B4E3D5;Q8NHW5;F8VPE8 Q53HW2 135 146 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 1.1232E-17 138.63 2 2 0.997 0.99676 24.115 4 Median 1.0444 1.2153 0.10412 2 0 Median 0.93865 0.8012 2.9557 2 0 Median 673260000 335040000 338220000 519130000 256150000 262980000 154130000 78890000 75242000 13394 345 13757 35338;35339;35340;35341 55234;55235;55236;55237;55238;55239;55240;55241;55242;55243;55244 55242 11 TSFIQYLLEQEVPGSR GKPMVLVAGQYSTGKTSFIQYLLEQEVPGS SFIQYLLEQEVPGSRVGPEPTTDCFVAVMH K T S S R V 0 1 0 0 0 2 2 1 0 1 2 0 0 1 1 2 1 0 1 1 0 0 16 0 1865.9523 A0A024R0S6;Q9NZN4;Q8NCJ3;B4DLA1 A0A024R0S6 72 87 EHD2 EH domain-containing protein 2 yes no 2 3.1072E-06 83.314 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9430000 0 9430000 9430000 0 9430000 0 0 0 13395 57 13758 35342;35343 55245;55246 55246 2 TSFLLNLR APRCPENAFFLDHVRTSFLLNLRRQLPQNV FFLDHVRTSFLLNLRRQLPQNVLDTSWPTP R T S L R R 0 1 1 0 0 0 0 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 8 0 962.55492 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 790 797 MYO1C Unconventional myosin-Ic no no 2 0.028279 53.351 2 1.1268 1.1826 11.717 2 Median 1.1268 1.1826 11.717 2 0 Median NaN NaN NaN 0 0 Median 44668000 20957000 23711000 44668000 20957000 23711000 0 0 0 13396 1088;1189 13759 35344;35345 55247;55248 55248 2 TSFSPCVPQCQTQGSYGSFTEQHR LRPSYSSCFPQYRSRTSFSPCVPQCQTQGS CQTQGSYGSFTEQHRSRSTSRCLPPPRRLQ R T S H R S 0 1 0 0 2 4 1 2 1 0 0 0 0 2 2 4 3 0 1 1 0 0 24 0 2788.197 Q5T749 Q5T749 225 248 KPRP Keratinocyte proline-rich protein yes yes 3 0.032205 24.78 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5289500 5289500 0 5289500 5289500 0 0 0 0 13397 1824 13760 35346 55249 55249 1 TSFTQEQIEALEK AQMRLQLKRKLQRNRTSFTQEQIEALEKEF NRTSFTQEQIEALEKEFERTHYPDVFARER R T S E K E 1 0 0 0 0 2 3 0 0 1 1 1 0 1 0 1 2 0 0 0 0 0 13 0 1522.7515 D1KF47;Q66SS1;B3KQG1;F1T0F8;D3DQZ8;P26367;Q59GD2 D1KF47 215 227 PAX6 Paired box protein Pax-6 yes no 2 9.4939E-09 105.83 1 2 1.0379 0.81611 1.6048 2 Median NaN NaN NaN 0 0 Median 1.0379 0.81611 1.6048 2 0 Median 18965000 15163000 3802300 11109000 11109000 0 7856900 4054700 3802300 13398 927 13761 35347;35348;35349 55250;55251;55252;55253 55250 4 TSGGLLSEAPNEK LEVDQFLEDVRLQERTSGGLLSEAPNEKLF ERTSGGLLSEAPNEKLFFVDTGSKEKGLTK R T S E K L 1 0 1 0 0 0 2 2 0 0 2 1 0 0 1 2 1 0 0 0 0 0 13 0 1301.6463 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4DVK1;B4E013 Q7L4X7 69 81 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 1.0293E-18 141.71 2 2 1.0693 1.2525 22.045 4 Linear 1.1106 1.2293 5.3558 2 0 Median 1.0455 0.84265 1.6896 2 0 Median 117430000 59769000 57658000 104660000 53583000 51073000 12772000 6186000 6585800 13399 1068 13762 35350;35351;35352;35353 55254;55255;55256;55257;55258;55259 55255 6 TSGHLLLGVVR SVESIISPKVKMALRTSGHLLLGVVRIYHR MALRTSGHLLLGVVRIYHRKAKYLLADCNE R T S V R I 0 1 0 0 0 0 0 2 1 0 3 0 0 0 0 1 1 0 0 2 0 0 11 0 1150.6822 A0A024R9J0;O60216;B3KUT8;F6KSS9;Q9H4I0;A0A140T8W2;E5RJW1;E5RJK5;E5RFV8;E5RIN7 A0A024R9J0 55 65 RAD21;RAD21L;RAD21L1 Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1 yes no 3 0.0020352 54.094 1 0.35138 0.35423 NaN 1 Median 0.35138 0.35423 NaN 1 0 Median NaN NaN NaN 0 0 Median 6380500 4727300 1653200 6380500 4727300 1653200 0 0 0 13400 280 13763 35354 55260 55260 1 TSGNVEDDLIIFPDDCEFK QQTDDSLIHFCWKDRTSGNVEDDLIIFPDD VEDDLIIFPDDCEFKRVPQCPSGRVYVLKF R T S F K R 0 0 1 4 1 0 2 1 0 2 1 1 0 2 1 1 1 0 0 1 0 0 19 0 2212.9834 Q68E00;Q16186;B4DMP7 Q68E00 65 83 DKFZp686G2045;ADRM1 Proteasomal ubiquitin receptor ADRM1 yes no 2 0.0079036 41.092 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6918100 0 6918100 6918100 0 6918100 0 0 0 13401 1768 13764 35355;35356 55261;55262 55261 2 TSGSVYITLK EQFLTELTRLFQKCRTSGSVYITLKKYDGR FQKCRTSGSVYITLKKYDGRTKPIPKKGTV R T S L K K 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 2 2 0 1 1 0 0 10 0 1067.5863 P37108;H0YLA2 P37108 22 31 SRP14 Signal recognition particle 14 kDa protein yes no 2 0.0048831 70.908 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10770000 0 10770000 10770000 0 10770000 0 0 0 13402 1549 13765 35357 55263 55263 1 TSIDAYDNFDNISLAQR LNNLFITEEDYQALRTSIDAYDNFDNISLA IDAYDNFDNISLAQRLEKHELIEFRRIAAY R T S Q R L 2 1 2 3 0 1 0 0 0 2 1 0 0 1 0 2 1 0 1 0 0 0 17 0 1941.9068 A0A087WVQ6;Q00610;K7EJJ5;J3KS13 A0A087WVQ6 1486 1502 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.00015864 53.967 2 1.3945 1.4003 NaN 1 Median 1.3945 1.4003 NaN 1 0 Median NaN NaN NaN 0 0 Median 6683300 2954200 3729000 6683300 2954200 3729000 0 0 0 13403 419 13766 35358;35359 55264;55265;55266 55265 3 TSIIEAQYLR IDYSQMDELALLSLRTSIIEAQYLRYHDIE LLSLRTSIIEAQYLRYHDIEPGAVVKGTVL R T S L R Y 1 1 0 0 0 1 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1192.6452 Q14690;B4DH82;B4DES7 Q14690 437 446 PDCD11 Protein RRP5 homolog yes no 2 2.0049E-09 129.42 2 2 1.16 1.0911 9.7632 4 Median 1.0689 1.2015 5.2109 2 0 Median 1.2334 1.0231 0.686 2 0 Median 207650000 97003000 110650000 172270000 82146000 90129000 35375000 14857000 20518000 13404 1741 13767 35360;35361;35362;35363 55267;55268;55269;55270;55271;55272;55273;55274 55270 8 TSILAAANPISGHYDR ISITKAGVKATLNARTSILAAANPISGHYD SILAAANPISGHYDRSKSLKQNINLSAPIM R T S D R S 3 1 1 1 0 0 0 1 1 2 1 0 0 0 1 2 1 0 1 0 0 0 16 0 1684.8533 Q14566;Q4ZG57;B4DRF6 Q14566 497 512 MCM6 DNA replication licensing factor MCM6 yes no 2;3 0.00012735 51.841 2 1 1.1271 1.0607 61.222 2 Median 1.6344 1.6353 NaN 1 0 Median 0.77718 0.68797 NaN 1 0 Median 19303000 6883900 12419000 16887000 5510100 11377000 2416100 1373800 1042300 13405 1734 13768 35364;35365;35366 55275;55276;55277 55275 3 TSLALDESLFR KGFAYIEFSDKESVRTSLALDESLFRGRQI ESVRTSLALDESLFRGRQIKVIPKRTNRPG R T S F R G 1 1 0 1 0 0 1 0 0 0 3 0 0 1 0 2 1 0 0 0 0 0 11 0 1250.6507 H0YJH9;B4DEH8;G3V4T2;Q86U42 H0YJH9 28 38 PABPN1 Polyadenylate-binding protein 2 yes no 2 4.8559E-05 82.749 3 1.9124 1.9157 6.6851 2 Median 1.9124 1.9157 6.6851 2 0 Median NaN NaN NaN 0 0 Median 17133000 6116200 11017000 17133000 6116200 11017000 0 0 0 13406 966 13769 35367;35368;35369 55278;55279;55280;55281 55279 4 TSLASGAQVNPTTQDNK KEKNEKLFKNYQTLKTSLASGAQVNPTTQD LASGAQVNPTTQDNKNPHVTSRATQLTTEK K T S N K N 2 0 2 1 0 2 0 1 0 0 1 1 0 0 1 2 3 0 0 1 0 0 17 0 1730.8435 A0A087X0P0;Q02224 A0A087X0P0 2314 2330 CENPE Kinesin-like protein;Centromere-associated protein E yes no 2 6.4384E-09 101.32 2 1 1.5754 1.4285 5.3811 2 Median 1.3575 1.3752 NaN 1 0 Median 1.8284 1.4839 NaN 1 0 Median 12925000 3166200 9758900 10081000 2239700 7841500 2843900 926460 1917400 13407 445 13770 35370;35371;35372 55282;55283;55284;55285 55282 4 TSLEVPEINALLLVPK KKGCKELWRRQPPYRTSLEVPEINALLLVP SLEVPEINALLLVPKENSLILAGGDCQLHT R T S P K E 1 0 1 0 0 0 2 0 0 1 4 1 0 0 2 1 1 0 0 2 0 0 16 0 1735.0131 Q86W42 Q86W42 122 137 THOC6 THO complex subunit 6 homolog yes yes 2 0.0001547 74.944 1 1.0331 1.0589 NaN 1 Median 1.0331 1.0589 NaN 1 0 Median NaN NaN NaN 0 0 Median 11811000 5269700 6541400 11811000 5269700 6541400 0 0 0 13408 1886 13771 35373 55286 55286 1 TSLGNVVLLLK YQHELEETTVPEIQRTSLGNVVLLLKSLGI EIQRTSLGNVVLLLKSLGIHDLMHFDFLDP R T S L K S 0 0 1 0 0 0 0 1 0 0 4 1 0 0 0 1 1 0 0 2 0 0 11 0 1155.7227 Q9P186;Q5SQH5;A0A140T8Y5;B4DZ28;Q5SQH4;O60231 Q9P186 277 287 DHX16;DBP2 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 0.00076242 71.692 2 1 0.58612 0.55935 6.3027 2 Median 0.56813 0.58485 NaN 1 0 Median 0.60467 0.53497 NaN 1 0 Median 5752800 3284000 2468800 4881100 2711400 2169700 871770 572640 299130 13409 597 13772 35374;35375;35376 55287;55288;55289;55290 55287 4 TSLMNQYVNK VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ SGVGKTSLMNQYVNKKFSNQYKATIGADFL K T S N K K 0 0 2 0 0 1 0 0 0 0 1 1 1 0 0 1 1 0 1 1 0 0 10 0 1196.586 A0A158RFU6;P51149;C9J592;C9J8S3;B4DPH9;C9IZZ0;C9J4V0;C9J4S4;C9J7D1 A0A158RFU6 22 31 RAB7A Ras-related protein Rab-7a yes no 2 0.0055669 56.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13410 628 13773 35377 55291 55291 488 1 TSLPWQGLK DDMESLGYVLMYFNRTSLPWQGLKAATKKQ LMYFNRTSLPWQGLKAATKKQKYEKISEKK R T S L K A 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 1 1 1 0 0 0 0 9 0 1028.5655 V9HW00;P48729;B4E1D9;Q05DL3;D6REM4;H0Y9X2;U3KQK7;B4DFH4;Q6PJ06;E7ETM0;B4DER9;U3KPX3 V9HW00 217 225 HEL-S-77p;CSNK1A1 Casein kinase I isoform alpha yes no 2 0.0018358 80.229 2 1.239 1.2865 5.1583 2 Median 1.239 1.2865 5.1583 2 0 Median NaN NaN NaN 0 0 Median 48309000 23229000 25080000 48309000 23229000 25080000 0 0 0 13411 1577 13774 35378;35379 55292;55293;55294 55293 3 TSNFALVGSYTLSLSSVGNTK HSSVMASPGGLSAVRTSNFALVGSYTLSLS VGSYTLSLSSVGNTKFVLDKVPFLSSLEGH R T S T K F 1 0 2 0 0 0 0 2 0 0 3 1 0 1 0 5 3 0 1 2 0 0 21 0 2145.0954 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1C2;H7C3S1 B4DSL6 813 833 ANLN Actin-binding protein anillin yes no 2 0.021565 30.543 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3528400 0 3528400 3528400 0 3528400 0 0 0 13412 294 13775 35380 55295 55295 1 TSNPLVLEEASASQAGSR LKAKQEKRSEKDTLKTSNPLVLEEASASQA PLVLEEASASQAGSRKESRLESSGKNKSYD K T S S R K 3 1 1 0 0 1 2 1 0 0 2 0 0 0 1 4 1 0 0 1 0 0 18 0 1815.8963 B4DRU9;A0A0S2Z5L1;Q9NUQ8;A0A0S2Z645 B4DRU9 104 121 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 4.7848E-17 110.25 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4861300 0 4861300 4861300 0 4861300 0 0 0 13413 583 13776 35381 55296 55296 1 TSPEMDIQNPDDGAR AERIEINRNEKKPMKTSPEMDIQNPDDGAR TSPEMDIQNPDDGARKPIPRDKVTENKRCL K T S A R K 1 1 1 3 0 1 1 1 0 1 0 0 1 0 2 1 1 0 0 0 0 0 15 0 1644.705 P46013;B4DRH3 P46013 3127 3141 MKI67 Antigen KI-67 yes no 2 8.318E-71 202.27 5 7 1.9348 1.9627 33.797 12 Median 1.7704 2.0131 41.086 5 0 Median 1.9768 1.6916 27.564 7 0 Median 614390000 210420000 403970000 486190000 170690000 315500000 128200000 39726000 88471000 13414 1569 13777;13778 35382;35383;35384;35385;35386;35387;35388;35389;35390;35391;35392;35393 55297;55298;55299;55300;55301;55302;55303;55304;55305;55306;55307;55308;55309;55310;55311;55312;55313;55314;55315;55316;55317;55318;55319;55320;55321;55322 55300 1345 26 TSPFELYQFFVR LGKSAGNAVWLNRDKTSPFELYQFFVRQPD RDKTSPFELYQFFVRQPDDSVERD______ K T S V R Q 0 1 0 0 0 1 1 0 0 0 1 0 0 3 1 1 1 0 1 1 0 0 12 0 1532.7664 H0YHS6;Q9Y2Z4 H0YHS6 271 282 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 2 0.00088952 64.297 2 1.6527 1.6758 1.2632 2 Median 1.6527 1.6758 1.2632 2 0 Median NaN NaN NaN 0 0 Median 16041000 7029400 9012000 16041000 7029400 9012000 0 0 0 13415 1293 13779 35394;35395 55323;55324;55325 55323 3 TSPHGILDILVHER CSYFALWSLESVVSRTSPHGILDILVHERS RTSPHGILDILVHERSLNRGVPPSYPPPEQ R T S E R S 0 1 0 1 0 0 1 1 2 2 2 0 0 0 1 1 1 0 0 1 0 0 14 0 1585.8576 Q8WYP5;Q96M44 Q8WYP5 440 453 AHCTF1 Protein ELYS yes no 3 7.2809E-05 64.136 2 2.3403 2.0076 9.2061 2 Median NaN NaN NaN 0 0 Median 2.3403 2.0076 9.2061 2 0 Median 55246000 16313000 38933000 0 0 0 55246000 16313000 38933000 13416 1945 13780 35396;35397 55326;55327;55328;55329;55330 55329 5 TSQDFLFSQLQYLPFSNK CACSDTSGPTMRYLRTSQDFLFSQLQYLPF DFLFSQLQYLPFSNKEYEISMLNQMSWLMK R T S N K E 0 0 1 1 0 3 0 0 0 0 3 1 0 3 1 3 1 0 1 0 0 0 18 0 2162.0684 Q92621;B4DE72;U3KQ97 Q92621 1086 1103 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.011228 41.092 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4666300 0 4666300 4666300 0 4666300 0 0 0 13417 1950 13781 35398 55331 55331 1 TSQDYQALTVHDNLAMK LVDLTRPSGLNPQAKTSQDYQALTVHDNLA QDYQALTVHDNLAMKICNEILTSPCSPEIR K T S M K I 2 0 1 2 0 2 0 0 1 0 2 1 1 0 0 1 2 0 1 1 0 0 17 0 1933.9204 Q9BPX3;Q6NUR1 Q9BPX3 817 833 NCAPG Condensin complex subunit 3 yes no 3 1.8721E-05 66.826 2 1.1081 1.2463 2.7478 2 Median 1.1081 1.2463 2.7478 2 0 Median NaN NaN NaN 0 0 Median 191480000 89218000 102260000 191480000 89218000 102260000 0 0 0 13418 1995 13782 35399;35400 55332;55333 55333 1828 2 TSQGSSSFQTTLSAWK MSPQKRVKNVQAQNRTSQGSSSFQTTLSAW SQGSSSFQTTLSAWKVKQDPSNSKNISKHG R T S W K V 1 0 0 0 0 2 0 1 0 0 1 1 0 1 0 5 3 1 0 0 0 0 16 0 1714.8162 B4DZL4;A0A024RCG4;Q92674;Q5JX02;Q5JX01 B4DZL4 16 31 FSHPRH1;CENPI Centromere protein I yes no 2 0.058671 22.321 1 1.3857 1.0921 NaN 1 Median NaN NaN NaN 0 0 Median 1.3857 1.0921 NaN 1 0 Median 3245000 1610700 1634300 0 0 0 3245000 1610700 1634300 13419 360 13783 35401 55334 55334 1 TSQNSELNNMQDLVEDYK IDSLKRYLDGLTAERTSQNSELNNMQDLVE NSELNNMQDLVEDYKKKYEDEINKRTAAEN R T S Y K K 0 0 3 2 0 2 2 0 0 0 2 1 1 0 0 2 1 0 1 1 0 0 18 0 2126.9426 CON__P35908;P35908 CON__P35908 254 271 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 1.3177E-06 74.769 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3866800 3866800 0 3866800 3866800 0 0 0 0 + 13420 1166 13784 35402;35403 55335;55336 55335 887 2 TSQNSELNNMQDLVEDYKK IDSLKRYLDGLTAERTSQNSELNNMQDLVE SELNNMQDLVEDYKKKYEDEINKRTAAEND R T S K K K 0 0 3 2 0 2 2 0 0 0 2 2 1 0 0 2 1 0 1 1 0 0 19 1 2255.0376 CON__P35908;P35908 CON__P35908 254 272 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 3 0.00011312 53.773 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19985000 19985000 0 8462400 8462400 0 11523000 11523000 0 + 13421 1166 13785;13786 35404;35405;35406 55337;55338;55339;55340 55337 887 4 TSQPPVPQGEAEEDSQGK VRFRISNSSTANRVKTSQPPVPQGEAEEDS PPVPQGEAEEDSQGKEGPSGSGDSQLSASS K T S G K E 1 0 0 1 0 3 3 2 0 0 0 1 0 0 3 2 1 0 0 1 0 0 18 0 1882.8545 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 725 742 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.00084967 40.066 1 0.66635 0.67852 NaN 1 Median 0.66635 0.67852 NaN 1 0 Median NaN NaN NaN 0 0 Median 12359000 6302300 6056200 12359000 6302300 6056200 0 0 0 13422 1699 13787 35407 55341;55342 55342 2 TSSAETPTIPLGSAVEAIK HQLWLSVEALKYSMKTSSAETPTIPLGSAV ETPTIPLGSAVEAIKANCSDNEFTQALTAA K T S I K A 3 0 0 0 0 0 2 1 0 2 1 1 0 0 2 3 3 0 0 1 0 0 19 0 1870.9888 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 582 600 IMMT MICOS complex subunit MIC60 no no 2 1.4573E-05 79.633 2 1 1.0373 1.1593 29.087 3 Median 1.0179 1.1433 1.967 2 0 Median 2.3487 1.891 NaN 1 0 Median 199470000 96197000 103280000 176650000 90365000 86284000 22824000 5832200 16992000 13423 1774;1029;1128 13788 35408;35409;35410 55343;55344;55345;55346;55347 55346 5 TSSAQVEGGVHSLHSYEK VRAMMYSGELKFEKRTSSAQVEGGVHSLHS AQVEGGVHSLHSYEKRLF____________ R T S E K R 1 0 0 0 0 1 2 2 2 0 1 1 0 0 0 4 1 0 1 2 0 0 18 0 1914.9072 H0Y4R1;P12268 H0Y4R1 450 467 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 7.8537E-17 114.96 3 1.2585 1.3915 2.7007 2 Median 1.2585 1.3915 2.7007 2 0 Median NaN NaN NaN 0 0 Median 107420000 43778000 63646000 107420000 43778000 63646000 0 0 0 13424 1282 13789 35411;35412;35413 55348;55349;55350;55351 55349 4 TSSAVWNSPPLQGAR LEDIFKKSKPRYHKRTSSAVWNSPPLQGAR TSSAVWNSPPLQGARVPSSLAYSLKKH___ R T S A R V 2 1 1 0 0 1 0 1 0 0 1 0 0 0 2 3 1 1 0 1 0 0 15 0 1569.79 Q9NQS7 Q9NQS7 892 906 INCENP Inner centromere protein yes yes 2 0.047673 39.657 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13425 2059 13790 35414 55352 55352 1 TSSDDESEEDEDDLLQR AMGGVPAWAETTKRKTSSDDESEEDEDDLL SDDESEEDEDDLLQRTGNFISTSTSLPRGI K T S Q R T 0 1 0 5 0 1 4 0 0 0 2 0 0 0 0 3 1 0 0 0 0 0 17 0 1981.7872 B2RAX6;Q9Y5J1 B2RAX6 180 196 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 8.6785E-05 72.29 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4719700 0 4719700 4719700 0 4719700 0 0 0 13426 876 13791 35415;35416;35417 55353;55354;55355 55355 3 TSSDNNVSVTNVSVAK SLSKPKFSGFTFKKKTSSDNNVSVTNVSVA SSDNNVSVTNVSVAKTPVLRNKDVNVTEDF K T S A K T 1 0 3 1 0 0 0 0 0 0 0 1 0 0 0 4 2 0 0 4 0 0 16 0 1620.7955 B2RAN0;P54132;H0YNU5;Q3B7X0;H0YLV8 B2RAN0 41 56 BLM Bloom syndrome protein yes no 2 1.4014E-12 110.92 4 1 1.0927 1.0064 60.626 2 Median 0.62328 0.65551 NaN 1 0 Median 1.9157 1.545 NaN 1 0 Median 25113000 11059000 14054000 22318000 10052000 12266000 2795500 1007800 1787700 13427 873 13792 35418;35419;35420;35421;35422 55356;55357;55358;55359;55360;55361 55358 6 TSSGDASSLSIEETNK REKRDDGYEAAASSKTSSGDASSLSIEETN SSGDASSLSIEETNKLRAKLGLKPLEVNAI K T S N K L 1 0 1 1 0 0 2 1 0 1 1 1 0 0 0 5 2 0 0 0 0 0 16 0 1624.7428 O43290;E9PQI8 O43290 110 125 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 1.1551E-05 86.803 3 0.83909 0.85366 NaN 1 Median 0.83909 0.85366 NaN 1 0 Median NaN NaN NaN 0 0 Median 20925000 15216000 5709400 20925000 15216000 5709400 0 0 0 13428 1384 13793 35423;35424;35425 55362;55363;55364;55365 55363 4 TSSLDPNDQVAMGR DDFYHQLLRELIERKTSSLDPNDQVAMGRQ KTSSLDPNDQVAMGRQWLAIQKLRSKIHKK K T S G R Q 1 1 1 2 0 1 0 1 0 0 1 0 1 0 1 2 1 0 0 1 0 0 14 0 1489.6831 Q9NY61;A0A087WWS8;A0A087WTH8 Q9NY61 476 489 AATF Protein AATF yes no 2 2.0454E-21 143.24 1 3 1.1326 1.0059 6.2449 4 Median 0.92119 1.0703 NaN 1 0 Median 1.1654 0.98946 5.2515 3 0 Median 77193000 39148000 38046000 59413000 30962000 28450000 17780000 8185200 9595200 13429 2080 13794;13795 35426;35427;35428;35429 55366;55367;55368;55369;55370;55371;55372;55373 55367 1916 8 TSSQPGFLER NYSSTSTRREHVKVKTSSQPGFLERLSETS HVKVKTSSQPGFLERLSETSGGMFVGLMAF K T S E R L 0 1 0 0 0 1 1 1 0 0 1 0 0 1 1 2 1 0 0 0 0 0 10 0 1120.5513 A0A024R2F9;Q9BTV4;A0A0S2Z5N2 A0A024R2F9 19 28 TMEM43 Transmembrane protein 43 yes no 2 0.018267 54.539 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13430 110 13796 35430 55374 55374 1 TSTSQAVFR VNQDTRLDNRVIDLRTSTSQAVFRLQSGIC RVIDLRTSTSQAVFRLQSGICHLFRETLIN R T S F R L 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 2 2 0 0 1 0 0 9 0 995.50361 D3DP78;A0A140VJW5;P14868;Q53T60;C9J7S3;C9JLC1 D3DP78 156 164 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 9.5747E-06 110.81 2 1 0.92758 0.88426 18.07 2 Median 0.92452 1.0048 NaN 1 0 Median 0.93066 0.7782 NaN 1 0 Median 32194000 14911000 17283000 28482000 13202000 15279000 3712600 1709100 2003500 13431 610 13797 35431;35432;35433 55375;55376;55377;55378 55375 4 TSTTGSILNLNLDR FSPQLSAPITTKTDKTSTTGSILNLNLDRS KTSTTGSILNLNLDRSKAEMDLKELSESVQ K T S D R S 0 1 2 1 0 0 0 1 0 1 3 0 0 0 0 2 3 0 0 0 0 0 14 0 1503.7893 A0A087WVZ6;A6H8Y8;A0A087WV57;Q5JV90;H7C4X9;A0A087WYS3;Q9ULU4 A0A087WVZ6 504 517 ZMYND8;DKFZp564P1772 Protein kinase C-binding protein 1 no no 2 8.9628E-05 87.001 1 2 1.7753 1.4486 43.406 3 Median 0.66114 0.68818 NaN 1 0 Median 1.7863 1.4593 1.0426 2 0 Median 44062000 20891000 23171000 21107000 12435000 8671900 22955000 8455900 14500000 13432 422;1317 13798 35434;35435;35436 55379;55380;55381;55382 55381 4 TSTTGVATTQSPTPR NPSSSVPPPSAGSVKTSTTGVATTQSPTPR TSTTGVATTQSPTPRSHSPSASQSGSQLRN K T S P R S 1 1 0 0 0 1 0 1 0 0 0 0 0 0 2 2 6 0 0 1 0 0 15 0 1503.7529 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;A0A0A0MTE2;E9PMT2 A0A1P7ZIM8 1190 1204 LMO7 LIM domain only protein 7 yes no 2 2.0197E-07 108.56 2 2.4717 2.4743 19.72 2 Median 2.4717 2.4743 19.72 2 0 Median NaN NaN NaN 0 0 Median 18570000 6201400 12369000 18570000 6201400 12369000 0 0 0 13433 640 13799 35437;35438 55383;55384;55385;55386 55383 4 TSVCCVEDGVSHR SGLSSTCIVDVGDQKTSVCCVEDGVSHRNT QKTSVCCVEDGVSHRNTRLCLAYGGSDVSR K T S H R N 0 1 0 1 2 0 1 1 1 0 0 0 0 0 0 2 1 0 0 3 0 0 13 0 1504.6399 Q9H981;H0Y849 Q9H981 289 301 ACTR8 Actin-related protein 8 yes no 3 0.017496 27.767 1 1 1.1511 1.0999 72.785 2 Median 0.64957 0.65744 NaN 1 0 Median 2.0398 1.8403 NaN 1 0 Median 9749200 5383700 4365500 7671700 4689900 2981800 2077500 693820 1383700 13434 2044 13800 35439;35440 55387;55388 55388 2 TSVGQAAGGQSGLGPPASQNVNSHVK RVPEAVELCQSFKPKTSVGQAAGGQSGLGP GLGPPASQNVNSHVKEPAGLEEEEVSRTLG K T S V K E 3 0 2 0 0 3 0 5 1 0 1 1 0 0 2 4 1 0 0 3 0 0 26 0 2447.2153 Q5SY21;Q5SY20;B2R702;A8K291;P10074 Q5SY21 118 143 ZBTB48 Zinc finger and BTB domain-containing protein 48 yes no 3 0.00027245 33.263 1 0.77372 0.79644 NaN 1 Median 0.77372 0.79644 NaN 1 0 Median NaN NaN NaN 0 0 Median 18057000 9733800 8323400 18057000 9733800 8323400 0 0 0 13435 709 13801 35441 55389;55390;55391;55392 55389 4 TSVLAAANPIESQWNPK LSIAKAGIICQLNARTSVLAAANPIESQWN VLAAANPIESQWNPKKTTIENIQLPHTLLS R T S P K K 3 0 2 0 0 1 1 0 0 1 1 1 0 0 2 2 1 1 0 1 0 0 17 0 1824.937 B4DLA6;B3KMX0;A0A024R7U6;P33991 B4DLA6 571 587 MCM4 DNA replication licensing factor MCM4 yes no 2 6.8814E-05 71.176 2 1 1.1417 1.1909 41.469 3 Plateau 1.129 1.1733 2.1073 2 0 Median 0.73754 0.57237 NaN 1 0 Median 27036000 12520000 14516000 23570000 10749000 12821000 3465800 1770900 1694900 13436 235 13802 35442;35443;35444 55393;55394;55395 55394 3 TSVSQNVIPSSAQK FYLSVGSPSVLLDAKTSVSQNVIPSSAQKR KTSVSQNVIPSSAQKRETYTFENSVNMLPS K T S Q K R 1 0 1 0 0 2 0 0 0 1 0 1 0 0 1 4 1 0 0 2 0 0 14 0 1444.7522 Q03188;H0Y8J2 Q03188 167 180 CENPC Centromere protein C yes no 2 1.1833E-58 200.76 1 2 1.322 1.0608 19.958 3 Median 0.68692 0.75845 NaN 1 0 Median 1.3229 1.0712 1.3769 2 0 Median 60617000 33573000 27045000 44321000 26547000 17774000 16297000 7026000 9270900 13437 1681 13803 35445;35446;35447 55396;55397;55398;55399;55400 55400 5 TSVTDFLR KAEGYAEGDLTLYHRTSVTDFLRAANPVDF DLTLYHRTSVTDFLRAANPVDFLSKASEIM R T S L R A 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 8 0 937.4869 Q8IY81;B4DKU3 Q8IY81 252 259 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.0080668 80.229 2 2 1.0934 1.0707 13.081 4 Median 1.0425 1.1919 1.7149 2 0 Median 1.157 0.95283 3.0338 2 0 Median 325000000 155760000 169240000 293140000 140590000 152550000 31859000 15172000 16688000 13438 1898 13804 35448;35449;35450;35451 55401;55402;55403;55404;55405 55401 5 TSYAQLLEECPRDETSGLHLLPLPESAPALPTEEQVQR SSSSETFPTPDGQGRTSYAQLLEECPRDET PESAPALPTEEQVQRSLQAVPGAKDGTSLW R T S Q R S 3 2 0 1 1 3 6 1 1 0 7 0 0 0 5 3 3 0 1 1 0 0 38 1 4274.1165 A0A075B730;A0A087X1U6;P58107 A0A075B730 1068 1105 EPPK1 Epiplakin no no 4 0.0021263 22.934 1 3.0427 2.6042 NaN 1 Median NaN NaN NaN 0 0 Median 3.0427 2.6042 NaN 1 0 Median 6009200 1278200 4731000 0 0 0 6009200 1278200 4731000 13439 397;1622 13805 35452 55406;55407 55406 2 TSYEEFTHK FNMCGFECRILPKCRTSYEEFTHKDGVWNL ILPKCRTSYEEFTHKDGVWNLQNEVTKERT R T S H K D 0 0 0 0 0 0 2 0 1 0 0 1 0 1 0 1 2 0 1 0 0 0 9 0 1140.5088 Q6P2Q9 Q6P2Q9 1202 1210 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 1.5748E-09 150.4 2 2 0.90348 0.85667 19.874 4 Median 0.90363 0.99936 0.11206 2 0 Median 0.9023 0.71066 4.7494 2 0 Median 115860000 63060000 52801000 109120000 59719000 49403000 6739400 3340900 3398600 13440 1854 13806 35453;35454;35455;35456 55408;55409;55410;55411;55412;55413 55408 6 TSYLTELIDR KELLKHKFIVKNSKKTSYLTELIDRFKRWK KNSKKTSYLTELIDRFKRWKAEGHSDDESD K T S D R F 0 1 0 1 0 0 1 0 0 1 2 0 0 0 0 1 2 0 1 0 0 0 10 0 1209.6241 Q8NBY1;B4E0Y9;Q9P289;Q9NWX4;Q499L9;Q96SR7;B4DMR0;H0Y630;B4DR80;Q6P0Y1;Q5U0E6;B4DT57;Q9Y6E0;Q6FG81;Q5JV99;Q5JV98 Q8NBY1 281 290 STK26;MST4;STK24;HEL-S-95 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 2 1.0181E-08 123.86 1 1 1.4187 1.3527 33.863 2 Median 1.6208 1.7186 NaN 1 0 Median 1.2418 1.0646 NaN 1 0 Median 44542000 16324000 28217000 41815000 14888000 26928000 2726500 1436800 1289800 13441 1065 13807 35457;35458 55414;55415 55414 2 TSYMAQLMK EHERILDMCCAPGGKTSYMAQLMKNTGVIL CAPGGKTSYMAQLMKNTGVILANDANAERL K T S M K N 1 0 0 0 0 1 0 0 0 0 1 1 2 0 0 1 1 0 1 0 0 0 9 0 1071.5093 P46087 P46087 399 407 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.00070037 77.923 3 2.4674 2.7844 NaN 1 Median 2.4674 2.7844 NaN 1 0 Median NaN NaN NaN 0 0 Median 79758000 12657000 67102000 79758000 12657000 67102000 0 0 0 13442 1570 13808 35459;35460;35461 55416;55417;55418 55416 1348;1349 3 TTAAHGLELR LLRELYLFDVLRADRTTAAHGLELRVPFLD LRADRTTAAHGLELRVPFLDHRFSSYYLSL R T T L R V 2 1 0 0 0 0 1 1 1 0 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1067.5724 B4DY32;P08243 B4DY32 325 334 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 3 0.016082 45.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13276000 0 13276000 13276000 0 13276000 0 0 0 13443 1051 13809 35462 55419 55419 1 TTAATLMNAYSSR KDEVYQILEKGAAKRTTAATLMNAYSSRSH KRTTAATLMNAYSSRSHSVFSVTIHMKETT R T T S R S 3 1 1 0 0 0 0 0 0 0 1 0 1 0 0 2 3 0 1 0 0 0 13 0 1385.6609 P52732;B2RAM6 P52732 222 234 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.010334 45.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13444 1602 13810 35463 55420 55420 1387 1 TTAENEFVMLK VEDFKNKYEDEINKRTTAENEFVMLKKDVD INKRTTAENEFVMLKKDVDAAYMNKVELEA R T T L K K 1 0 1 0 0 0 2 0 0 0 1 1 1 1 0 0 2 0 0 1 0 0 11 0 1281.6275 CON__P13647;P13647;B4E1T1;B4DL32;F8W0C6;H0YIN9 CON__P13647 266 276 KRT5 Keratin, type II cytoskeletal 5 no no 2 1.8517E-16 131.62 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24731000 24731000 0 24731000 24731000 0 0 0 0 + 13445 1162 13811 35464 55421 55421 874 1 TTALDQLSEK ERNQLRGELDTMSKKTTALDQLSEKMKEKT TMSKKTTALDQLSEKMKEKTQELESHQSEC K T T E K M 1 0 0 1 0 1 1 0 0 0 2 1 0 0 0 1 2 0 0 0 0 0 10 0 1104.5663 P49454 P49454 2070 2079 CENPF Centromere protein F yes yes 2 0.00095338 78.556 1 0.98484 1.0451 NaN 1 Median 0.98484 1.0451 NaN 1 0 Median NaN NaN NaN 0 0 Median 23426000 11116000 12310000 23426000 11116000 12310000 0 0 0 13446 1581 13812 35465 55422 55422 1 TTANLAALK DGIPNDSSDSEMEDKTTANLAALKLDEWLH SEMEDKTTANLAALKLDEWLHFTLEPEAAS K T T L K L 3 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 9 0 901.52328 Q6ZMY0;Q9H6S0 Q6ZMY0 1008 1016 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 1 0.00037129 107.29 1 0.96435 1.1149 NaN 1 Median 0.96435 1.1149 NaN 1 0 Median NaN NaN NaN 0 0 Median 199890000 103590000 96292000 199890000 103590000 96292000 0 0 0 13447 1863 13813 35466 55423 55423 1 TTCSCSLAVQLSK SLKWIFVGGKGGVGKTTCSCSLAVQLSKGR GKTTCSCSLAVQLSKGRESVLIISTDPAHN K T T S K G 1 0 0 0 2 1 0 0 0 0 2 1 0 0 0 3 2 0 0 1 0 0 13 0 1453.6905 A0A087WXS7;O43681;K7ERW9 A0A087WXS7 34 46 ASNA1 ATPase ASNA1 yes no 2 0.0012044 77.062 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4232200 0 4232200 4232200 0 4232200 0 0 0 13448 431 13814 35467 55424 55424 1 TTDDTTTDNYIAQGK SSNVNKQEENGVFIKTTDDTTTDNYIAQGK TTDDTTTDNYIAQGKRKSNEMITNLGKKQK K T T G K R 1 0 1 3 0 1 0 1 0 1 0 1 0 0 0 0 5 0 1 0 0 0 15 0 1642.7322 B4DXX1;B2R713;Q7Z2T5 B4DXX1 439 453 TRMT1L TRMT1-like protein yes no 2 3.421E-11 124.42 2 0.84413 0.85594 NaN 1 Median 0.84413 0.85594 NaN 1 0 Median NaN NaN NaN 0 0 Median 5931300 3437500 2493900 5931300 3437500 2493900 0 0 0 13449 846 13815 35468;35469 55425;55426;55427;55428 55425 4 TTDGSLQIR RTDNRPRNPREAKGRTTDGSLQIRVDCNNE REAKGRTTDGSLQIRVDCNNERSVHTKTLQ R T T I R V 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 1 2 0 0 0 0 0 9 0 989.51417 X5DQX7;Q06787;W5ZQ92;Q59GC1;B4DFH8 X5DQX7 573 581 FMR1 Fragile X mental retardation protein 1 yes no 2 0.0033771 71.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13450 1689 13816 35470 55429 55429 1 TTDGVYEGVAIGGDR RSGGMSNELNNIISRTTDGVYEGVAIGGDR TTDGVYEGVAIGGDRYPGSTFMDHVLRYQD R T T D R Y 1 1 0 2 0 0 1 4 0 1 0 0 0 0 0 0 2 0 1 2 0 0 15 0 1508.7107 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 667 681 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.0016312 65.234 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7930500 0 7930500 7930500 0 7930500 0 0 0 13451 89 13817 35471;35472 55430;55431 55431 2 TTDGYLLR VKKWQTMIEAHVDVKTTDGYLLRLFCVGFT EAHVDVKTTDGYLLRLFCVGFTKKRNNQIR K T T L R L 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 8 0 937.4869 Q6NXR8;A8K4W0;P61247;D6RG13;B7Z3M5;H0Y8L7;E9PFI5;D6RAT0;D6RB09;D6RAS7;H0Y9Y4;D6RED7;D6R9B6 Q6NXR8 129 136 RPS3A 40S ribosomal protein S3a yes no 2 0.00095293 124.37 2 2 0.82351 0.96454 18.052 3 Median 0.82477 0.97183 1.0642 2 0 Median 0.81521 0.71108 NaN 1 0 Median 1270700000 687760000 582900000 1233900000 666900000 567000000 36774000 20869000 15905000 13452 742 13818 35473;35474;35475;35476 55432;55433;55434;55435;55436;55437;55438 55434 7 TTEEQVQASTPCPR EDGALDDEGHSGIKKTTEEQVQASTPCPRT KTTEEQVQASTPCPRTEMASARIGDEYAED K T T P R T 1 1 0 0 1 2 2 0 0 0 0 0 0 0 2 1 3 0 0 1 0 0 14 0 1602.7308 Q14137;B2RDN4;A8K3R2 Q14137 97 110 BOP1 Ribosome biogenesis protein BOP1 yes no 2 2.9106E-15 137.01 2 2 1.2134 1.0037 25.225 3 Median 0.61075 0.65718 NaN 1 0 Median 1.2158 1.0167 1.8109 2 0 Median 63441000 28865000 34576000 25734000 12631000 13102000 37708000 16234000 21474000 13453 1726 13819 35477;35478;35479;35480 55439;55440;55441;55442;55443;55444;55445 55440 7 TTEMETIYDLGTK PATGTGSKVGKLTLKTTEMETIYDLGTKMI LKTTEMETIYDLGTKMIESLTKDKVQAGDV K T T T K M 0 0 0 1 0 0 2 1 0 1 1 1 1 0 0 0 4 0 1 0 0 0 13 0 1500.7018 Q9Y230;B3KNL2;M0R0Y3;B4DW30;X6R2L4 Q9Y230 165 177 RUVBL2 RuvB-like 2 yes no 2 4.8037E-09 115.18 2 2 1.1079 0.99493 33.547 3 Median 1.1079 1.1858 NaN 1 0 Median 1.0002 0.78535 33.452 2 0 Median 57532000 37833000 19699000 51245000 34435000 16809000 6287400 3397900 2889500 13454 2120 13820;13821 35481;35482;35483;35484 55446;55447;55448;55449;55450 55448 1947 5 TTEPGVTGLLLAVEGPAAK SEKLQVGQGVSLTLKTTEPGVTGLLLAVEG GVTGLLLAVEGPAAKRTMRPTQKDSETVDE K T T A K R 3 0 0 0 0 0 2 3 0 0 3 1 0 0 2 0 3 0 0 2 0 0 19 0 1823.004 Q14690;B4DH82 Q14690 982 1000 PDCD11 Protein RRP5 homolog yes no 2 2.8028E-08 94.551 2 2 1.2049 1.186 2.099 4 Median 1.0677 1.2049 1.1147 2 0 Median 1.3675 1.1665 1.2188 2 0 Median 376030000 169680000 206350000 230070000 108890000 121180000 145960000 60791000 85172000 13455 1741 13822 35485;35486;35487;35488 55451;55452;55453;55454;55455;55456;55457 55457 7 TTESHMDWEK CMKNNLPSNDSSKFKTTESHMDWEKVAFKD SSKFKTTESHMDWEKVAFKDFSGDMCKLKW K T T E K V 0 0 0 1 0 0 2 0 1 0 0 1 1 0 0 1 2 1 0 0 0 0 10 0 1262.5238 E9PKP7;P17480;A8K962;Q05BZ1;Q9BQR2;E9PMM2 E9PKP7 48 57 UBTF Nucleolar transcription factor 1 yes no 2 0.00023278 87.258 1 1 0.97221 0.90151 41.008 2 Median 0.65067 0.67459 NaN 1 0 Median 1.4527 1.2048 NaN 1 0 Median 13059000 7651400 5407500 11276000 6904200 4371800 1782800 747150 1035700 13456 1244 13823;13824 35489;35490 55458;55459;55460 55458 953 3 TTEVTGTGLGR PLASPADGVKSKPRKTTEVTGTGLGRNRKK KPRKTTEVTGTGLGRNRKKLSSYPKQILRR K T T G R N 0 1 0 0 0 0 1 3 0 0 1 0 0 0 0 0 4 0 0 1 0 0 11 0 1090.5619 Q8WYP5 Q8WYP5 2238 2248 AHCTF1 Protein ELYS yes yes 2 8.4152E-17 155.84 2 1 1.1859 1.3456 12.758 3 Median 1.1458 1.2431 11.202 2 0 Median 1.8023 1.4782 NaN 1 0 Median 95005000 45557000 49448000 86184000 42310000 43874000 8820700 3246800 5573900 13457 1945 13825 35491;35492;35493 55461;55462;55463;55464;55465;55466 55463 6 TTGFGMIYDSLDYAK VIFVFGFRTHFGGGKTTGFGMIYDSLDYAK TTGFGMIYDSLDYAKKNEPKHRLARHGLYE K T T A K K 1 0 0 2 0 0 0 2 0 1 1 1 1 1 0 1 2 0 2 0 0 0 15 0 1680.7705 E7ETK0;A0A087WUS0;P62847 E7ETK0 69 83 RPS24 40S ribosomal protein S24 yes no 2 2.0526E-15 128.08 3 5 0.99688 0.85096 49.037 7 Median 1.1817 1.3879 0.75588 2 0 Median 0.99219 0.76917 37.768 5 0 Median 1135500000 595280000 540180000 650090000 307360000 342730000 485370000 287930000 197440000 13458 413 13826;13827 35494;35495;35496;35497;35498;35499;35500;35501 55467;55468;55469;55470;55471;55472;55473;55474;55475;55476;55477;55478;55479;55480;55481;55482;55483;55484 55470 298 18 TTGIVETHFTFK NYIPTQQDVLRTRVKTTGIVETHFTFKDLY RVKTTGIVETHFTFKDLYFKMFDVGGQRSE K T T F K D 0 0 0 0 0 0 1 1 1 1 0 1 0 2 0 0 4 0 0 1 0 0 12 0 1379.7085 P08754;A0A142CHG9;P63096;P04899;Q93020;B3KP24;B3KX51;B3KP89;Q96C71;P09471;H3BTM2;C9JPP4;Q8N6I9 P08754 181 192 GNAI3;GNAI1;GNAI2;WUGSC:H_LUCA16.1;GNAO1 Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha yes no 2;3 0.0014978 77.379 2 1.0113 1.0408 NaN 1 Median 1.0113 1.0408 NaN 1 0 Median NaN NaN NaN 0 0 Median 17308000 4929600 12378000 17308000 4929600 12378000 0 0 0 13459 1458 13828 35502;35503 55485;55486;55487 55486 3 TTGIVMDSGDGVTHTVPIYEGYALPHAILR YVAIQAVLSLYASGRTTGIVMDSGDGVTHT VPIYEGYALPHAILRLDLAGRDLTDYLMKI R T T L R L 2 1 0 2 0 0 1 4 2 3 2 0 1 0 2 1 4 0 2 3 0 0 30 0 3182.607 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q562Z7;Q562X9;Q562S0;Q562R8;Q562P0;Q562N0;Q562L5;A0AUL6;Q562Y6;Q562N8;Q562Z6;Q562Y8;Q562N2;Q562M5;Q562M3;P63261;I3L3I0;I3L1U9;I3L4N8;Q562L9 P63261 148 177 PS1TP5BP1;ACTB;ACTG1;ACT Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 3;4 5.3221E-55 139.67 9 10 1.7817 1.7546 24.094 18 Median 1.6972 1.9192 27.302 9 0 Median 1.7978 1.5476 19.641 9 0 Median 6307600000 2044700000 4263000000 3345600000 1023500000 2322100000 2962000000 1021200000 1940800000 13460 1624;1656;1796 13829;13830 35504;35505;35506;35507;35508;35509;35510;35511;35512;35513;35514;35515;35516;35517;35518;35519;35520;35521;35522 55488;55489;55490;55491;55492;55493;55494;55495;55496;55497;55498;55499;55500;55501;55502;55503;55504;55505;55506;55507;55508;55509;55510;55511;55512;55513;55514;55515;55516;55517;55518;55519;55520;55521;55522;55523;55524;55525;55526;55527;55528;55529;55530 55507 1411 43 TTGLEEAAEAETAK SNDQDGEYCPEVKLKTTGLEEAAEAETAKD KTTGLEEAAEAETAKDNGEAEDQEEKEDAE K T T A K D 4 0 0 0 0 0 4 1 0 0 1 1 0 0 0 0 3 0 0 0 0 0 14 0 1419.6729 A0A024R704;P78362 A0A024R704 327 340 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal yes no 2 1.741E-06 98.898 2 1.6036 1.6024 NaN 1 Median 1.6036 1.6024 NaN 1 0 Median NaN NaN NaN 0 0 Median 15229000 6025700 9203700 15229000 6025700 9203700 0 0 0 13461 212 13831 35523;35524 55531;55532 55532 2 TTGNATVDHLSK LLVEKGEYCQTRYVKTTGNATVDHLSKYLA YVKTTGNATVDHLSKYLALRIALERRQQQE K T T S K Y 1 0 1 1 0 0 0 1 1 0 1 1 0 0 0 1 3 0 0 1 0 0 12 0 1242.6204 A0A024RCR9;Q06587;B4DW57 A0A024RCR9 257 268 RING1 E3 ubiquitin-protein ligase RING1 yes no 2 0.00018473 90.827 1 1 1.0818 1.0093 27.575 2 Median 0.80129 0.83051 NaN 1 0 Median 1.4605 1.2266 NaN 1 0 Median 20359000 10440000 9918200 18752000 9825800 8926500 1606200 614520 991710 13462 369 13832 35525;35526 55533;55534 55533 2 TTHFVEGGDAGNR WPFKLSSPRGGMKKKTTHFVEGGDAGNRED KKTTHFVEGGDAGNREDQINRLIRRMN___ K T T N R E 1 1 1 1 0 0 1 3 1 0 0 0 0 1 0 0 2 0 0 1 0 0 13 0 1359.6167 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 235 247 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2;3 6.2691E-105 247.22 3 3 0.87279 1.047 22.78 6 Plateau 0.9322 1.0392 3.2626 3 0 Median 0.83357 0.69519 1.1861 3 0 Plateau 214190000 112150000 102050000 204980000 106720000 98261000 9209900 5422300 3787700 13463 240 13833 35527;35528;35529;35530;35531;35532 55535;55536;55537;55538;55539;55540;55541;55542;55543 55535 9 TTHFVEGGDAGNREDQINR WPFKLSSPRGGMKKKTTHFVEGGDAGNRED VEGGDAGNREDQINRLIRRMN_________ K T T N R L 1 2 2 2 0 1 2 3 1 1 0 0 0 1 0 0 2 0 0 1 0 0 19 1 2114.973 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 235 253 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2;3;4 4.5713E-23 129.11 6 1 0.92109 1.0219 14.135 7 Median 0.929 1.0367 7.4338 6 0 Median 0.83641 0.75701 NaN 1 0 Median 884350000 474170000 410180000 879980000 471870000 408110000 4372400 2302200 2070200 13464 240 13834 35533;35534;35535;35536;35537;35538;35539 55544;55545;55546;55547;55548;55549;55550;55551;55552;55553;55554;55555;55556 55553 13 TTHYTPLACGSNPLK QWPLLLKNFDKLNVRTTHYTPLACGSNPLK TTHYTPLACGSNPLKREIGDYIRTGFINLD R T T L K R 1 0 1 0 1 0 0 1 1 0 2 1 0 0 2 1 3 0 1 0 0 0 15 0 1658.8086 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 66 80 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2;3 6.746E-05 75.479 4 1 0.72052 0.80148 17.631 3 Plateau 0.71376 0.75762 7.9585 2 0 Median 0.69661 0.56724 NaN 1 0 Median 84308000 39501000 44806000 79733000 36843000 42890000 4574100 2658000 1916200 13465 1398 13835 35540;35541;35542;35543;35544 55557;55558;55559;55560;55561;55562;55563 55560 7 TTIENIQLPHTLLSR LAAANPIESQWNPKKTTIENIQLPHTLLSR TTIENIQLPHTLLSRFDLIFLMLDPQDEAY K T T S R F 0 1 1 0 0 1 1 0 1 2 3 0 0 0 1 1 3 0 0 0 0 0 15 0 1734.9628 B4DLA6;B3KMX0;A0A024R7U6;P33991 B4DLA6 589 603 MCM4 DNA replication licensing factor MCM4 yes no 3 0.00015066 68.044 2 0.89063 0.74192 NaN 1 Median NaN NaN NaN 0 0 Median 0.89063 0.74192 NaN 1 0 Median 9528900 6639000 2889900 0 0 0 9528900 6639000 2889900 13466 235 13836 35545;35546 55564;55565;55566 55564 3 TTILQSTGK VTRDIVSRERVWRTRTTILQSTGKNFSKNI RVWRTRTTILQSTGKNFSKNIFAILQSVKA R T T G K N 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 3 0 0 0 0 0 9 0 947.52876 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9;B4DV47;A0A0S2Z5N1 Q6P1J9 235 243 CDC73 Parafibromin yes no 2 0.0021742 75.825 2 1 1.7689 1.7782 10.636 3 Median 1.7363 1.7959 1.4002 2 0 Median 1.7689 1.495 NaN 1 0 Median 64814000 21332000 43482000 62817000 20556000 42261000 1997100 776480 1220600 13467 1851 13837 35547;35548;35549 55567;55568;55569;55570 55568 4 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR NSQGEEVAQRSTVFKTTIPEEEEEEEEAAG VVVEEELFHQQGTPRASNRSCAIM______ K T T P R A 2 1 0 0 0 2 11 2 1 1 1 0 0 1 2 0 3 0 0 3 0 0 30 0 3410.5638 P20700;B4DZT3 P20700 548 577 LMNB1 Lamin-B1 yes no 3 3.0044E-36 124.08 2 2 1.0938 1.0884 17.438 4 Median 1.1079 1.2738 2.3479 2 0 Median 1.0878 0.94265 0.42043 2 0 Median 495550000 234560000 260990000 352040000 166650000 185390000 143510000 67916000 75591000 13468 1502 13838 35550;35551;35552;35553 55571;55572;55573;55574;55575;55576;55577;55578 55572 8 TTISVAHLLAAR LAKVYQPKRSVLSPKTTISVAHLLAARQDL SPKTTISVAHLLAARQDLSKILRTSSGSIR K T T A R Q 3 1 0 0 0 0 0 0 1 1 2 0 0 0 0 1 2 0 0 1 0 0 12 0 1251.7299 I6L9E8;Q8NCA5;E9PH82;B4DT23;B4DY25;B3KTW4 I6L9E8 261 272 FAM98A Protein FAM98A yes no 2;3 0.0010217 68.557 3 2 1.4166 1.4213 9.9511 5 Median 1.4166 1.4562 1.7732 3 0 Median 1.4582 1.2188 5.4211 2 0 Median 72315000 33183000 39131000 62257000 28944000 33313000 10057000 4239000 5818400 13469 1324 13839 35554;35555;35556;35557;35558 55579;55580;55581;55582;55583;55584;55585 55585 7 TTITTTTTSSSGLGSPMIVGSPR ______________________________ SSSGLGSPMIVGSPRALTQPLGLLRLLQLV R T T P R A 0 1 0 0 0 0 0 3 0 2 1 0 1 0 2 5 7 0 0 1 0 0 23 0 2251.1366 C9JJV6;C9JZL8;C9J5M0;C9JC07;B4DG42;A0A024R4N0;Q96S97 C9JJV6 8 30 MYADM;hCG_1640809 Myeloid-associated differentiation marker yes no 2 1.3224E-06 68.257 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13470 158 13840 35559;35560 55586;55587 55587 134 2 TTIYEIQDDR VYGVFMLHKKTVNQKTTIYEIQDDRGKMDV TVNQKTTIYEIQDDRGKMDVVGTGQCHNIP K T T D R G 0 1 0 2 0 1 1 0 0 2 0 0 0 0 0 0 2 0 1 0 0 0 10 0 1252.5935 D3DUZ3;Q16666;H3BR88 D3DUZ3 335 344 IFI16 Gamma-interferon-inducible protein 16 yes no 2 0.016989 54.982 1 1 1.2055 1.0679 NaN 1 Median NaN NaN NaN 0 0 Median 1.2055 1.0679 NaN 1 0 Median 1913600 739830 1173700 0 0 0 1913600 739830 1173700 13471 1196 13841 35561;35562 55588;55589 55588 2 TTLEGHLAK LRDAQQQVKALGTERTTLEGHLAKVQAQAE ALGTERTTLEGHLAKVQAQAEQGQQELKNL R T T A K V 1 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 2 0 0 0 0 0 9 0 968.5291 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 186 194 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.0070864 62.546 1 0.79773 0.78854 NaN 1 Median 0.79773 0.78854 NaN 1 0 Median NaN NaN NaN 0 0 Median 25688000 13183000 12505000 25688000 13183000 12505000 0 0 0 13472 371 13842 35563 55590 55590 1 TTLILPTQQVR SPSEASQHSMQSPQKTTLILPTQQVRRSSR SPQKTTLILPTQQVRRSSRIKPPGPTAVPK K T T V R R 0 1 0 0 0 2 0 0 0 1 2 0 0 0 1 0 3 0 0 1 0 0 11 0 1268.7452 Q9UQR0;B4DZR9;B4DRC2 Q9UQR0 271 281 SCML2 Sex comb on midleg-like protein 2 yes no 2 0.00018166 93.598 2 2 1.0083 0.84238 65.094 3 Median 0.28221 0.27934 NaN 1 0 Median 1.0089 0.86195 3.2468 2 0 Median 33219000 25740000 7479000 26334000 22647000 3687000 6884800 3092800 3792000 13473 2118 13843 35564;35565;35566;35567 55591;55592;55593;55594;55595;55596 55592 6 TTLSASGTGFGDK TAKQTGIETPNKSGKTTLSASGTGFGDKFK GKTTLSASGTGFGDKFKPVIGTWDCDTCLV K T T D K F 1 0 0 1 0 0 0 3 0 0 1 1 0 1 0 2 3 0 0 0 0 0 13 0 1240.5935 A0A024QZW7;P49790 A0A024QZW7 706 718 NUP153 Nuclear pore complex protein Nup153 yes no 2 0.0017989 56.359 1 1.455 1.5083 NaN 1 Median 1.455 1.5083 NaN 1 0 Median NaN NaN NaN 0 0 Median 9825800 4807700 5018100 9825800 4807700 5018100 0 0 0 13474 31 13844 35568 55597 55597 1 TTLTAAITK PHVNVGTIGHVDHGKTTLTAAITKILAEGG HVDHGKTTLTAAITKILAEGGGAKFKKYEE K T T T K I 2 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 4 0 0 0 0 0 9 0 918.5386 P49411;H3BNU3 P49411 71 79 TUFM Elongation factor Tu, mitochondrial yes no 2 0.021253 49.536 1 5.0334 5.6569 NaN 1 Median 5.0334 5.6569 NaN 1 0 Median NaN NaN NaN 0 0 Median 69897000 17740000 52158000 69897000 17740000 52158000 0 0 0 13475 1580 13845 35569 55598 55598 1 TTNFAGILSQGLR FKQLHNRRLLWHGSRTTNFAGILSQGLRIA SRTTNFAGILSQGLRIAPPEAPVTGYMFGK R T T L R I 1 1 1 0 0 1 0 2 0 1 2 0 0 1 0 1 2 0 0 0 0 0 13 0 1376.7412 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 866 878 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.5283E-13 143.73 2 2 0.82757 0.83113 11.877 4 Median 0.64124 0.75165 0.21692 2 0 Median 1.0617 0.92315 0.85102 2 0 Median 956850000 549020000 407820000 669600000 413120000 256470000 287250000 135900000 151350000 13476 139 13846 35570;35571;35572;35573 55599;55600;55601;55602;55603;55604;55605;55606;55607;55608 55605 10 TTNIELQGVPNDEVHPLLGVK QSSADGSQPPKKKPKTTNIELQGVPNDEVH QGVPNDEVHPLLGVKGDGKSKKKQAGRPKG K T T V K G 0 0 2 1 0 1 2 2 1 1 3 1 0 0 2 0 2 0 0 3 0 0 21 0 2272.2063 A0A024R9B5;B4DMM7;Q15291;B4DLF8 A0A024R9B5 454 474 RBBP5 Retinoblastoma-binding protein 5 yes no 3 4.1011E-08 64.582 2 2 0.9732 0.91113 34.717 4 Median 0.64109 0.6677 7.2152 2 0 Median 1.5331 1.2117 3.567 2 0 Median 94223000 49530000 44693000 62634000 36453000 26181000 31589000 13077000 18511000 13477 272 13847 35574;35575;35576;35577 55609;55610;55611;55612;55613 55610 5 TTPDVIFVFGFR VPKTEIREKLAKMYKTTPDVIFVFGFRTHF MYKTTPDVIFVFGFRTHFGGGKTTGFGMIY K T T F R T 0 1 0 1 0 0 0 1 0 1 0 0 0 3 1 0 2 0 0 2 0 0 12 0 1397.7343 E7ETK0;A0A087WUS0;P62847 E7ETK0 50 61 RPS24 40S ribosomal protein S24 yes no 2 8.15E-20 133.13 3 4 0.68804 0.80192 12.376 3 Median 0.68752 0.80715 0.91931 2 0 Median 0.75228 0.65162 NaN 1 0 Median 1046200000 677100000 369050000 779700000 460620000 319080000 266450000 216480000 49969000 13478 413 13848 35578;35579;35580;35581;35582;35583;35584 55614;55615;55616;55617;55618;55619;55620;55621;55622;55623;55624;55625 55624 12 TTPSGLQIMPLK PSSGGDRATKTVSYRTTPSGLQIMPLKKSQ SYRTTPSGLQIMPLKKSQNGMENGDAGSEK R T T L K K 0 0 0 0 0 1 0 1 0 1 2 1 1 0 2 1 2 0 0 0 0 0 12 0 1284.7112 A0A0B4J291;Q8N8U2 A0A0B4J291 139 150 CDYL2 Chromodomain Y-like protein 2 yes no 2 9.8464E-05 74.464 2 1.8429 1.856 2.3586 2 Median 1.8429 1.856 2.3586 2 0 Median NaN NaN NaN 0 0 Median 51367000 18807000 32560000 51367000 18807000 32560000 0 0 0 13479 503 13849 35585;35586 55626;55627;55628 55628 354 3 TTPSVVAFTADGER EGKQAKVLENAEGARTTPSVVAFTADGERL RTTPSVVAFTADGERLVGMPAKRQAVTNPN R T T E R L 2 1 0 1 0 0 1 1 0 0 0 0 0 1 1 1 3 0 0 2 0 0 14 0 1449.71 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;D6RJI2;D6RA73 B7Z4V2 72 85 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.00015067 89.403 1 1 2.3427 2.6746 NaN 1 Median 2.3427 2.6746 NaN 1 0 Median NaN NaN NaN 0 0 Median 97035000 25935000 71100000 92026000 25935000 66091000 5008700 0 5008700 13480 1092 13850 35587;35588 55629;55630;55631 55629 3 TTPSYVAFTDTER QHGKVEIIANDQGNRTTPSYVAFTDTERLI NRTTPSYVAFTDTERLIGDAAKNQVAMNPT R T T E R L 1 1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 4 0 1 1 0 0 13 0 1486.694 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DI39;B4DWK5;B4DNX1;B4E1T6;B4DNV4;Q53FC7;B3KSM6;B2R6X5;P17066;P48741;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;B3KTV0;E9PNE6;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;A0A024R6B5;P54652;E9PI65;B3KUS2 V9HW22 37 49 HEL-S-103;HSPA1B;HSPA1A;HSPA6;HSPA7;HEL-S-72p;HSPA8;HSPA2 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2 7.4345E-19 144.17 2 2 1.1241 1.1349 10.317 4 Median 1.0606 1.2447 1.2113 2 0 Median 1.2009 1.0415 0.28614 2 0 Median 916920000 455820000 461100000 785460000 396500000 388960000 131460000 59318000 72138000 13481 1467;533;845 13851 35589;35590;35591;35592 55632;55633;55634;55635;55636;55637;55638;55639;55640;55641;55642 55634 11 TTQFSCTLGEK CDGKNLTIKTESTLKTTQFSCTLGEKFEET STLKTTQFSCTLGEKFEETTADGRKTQTVC K T T E K F 0 0 0 0 1 1 1 1 0 0 1 1 0 1 0 1 3 0 0 0 0 0 11 0 1270.5864 E7DVW5;Q01469;I6L8B7 E7DVW5 62 72 FABP5 Fatty acid-binding protein, epidermal yes no 2 0.0026738 72.325 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4676300 4676300 0 4676300 4676300 0 0 0 0 13482 1217 13852 35593 55643 55643 1 TTQIINITMTK VFLDSGRKTRSARRRTTQIINITMTKKLDV ARRRTTQIINITMTKKLDVEEPDSANSSFY R T T T K K 0 0 1 0 0 1 0 0 0 3 0 1 1 0 0 0 4 0 0 0 0 0 11 0 1262.6904 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1797 1807 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.00022378 76.619 2 1.2121 1.241 18.664 2 Median 1.2121 1.241 18.664 2 0 Median NaN NaN NaN 0 0 Median 21847000 10390000 11457000 21847000 10390000 11457000 0 0 0 13483 186;1747 13853 35594;35595 55644;55645 55645 152 2 TTQIPQYLYEGGISR NLDNAVLIGETGSGKTTQIPQYLYEGGISR TTQIPQYLYEGGISRQGIIAVTQPRRVAAI K T T S R Q 0 1 0 0 0 2 1 2 0 2 1 0 0 0 1 1 2 0 2 0 0 0 15 0 1724.8733 B4DIS6;Q9H6R0 B4DIS6 163 177 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.00029841 73.848 4 2 1.3759 1.2728 12.63 4 Median 1.3834 1.4359 4.1639 2 0 Median 1.3696 1.1585 0.42207 2 0 Median 72369000 36312000 36057000 57329000 30297000 27032000 15039000 6014800 9024600 13484 983 13854 35596;35597;35598;35599;35600;35601 55646;55647;55648;55649;55650;55651;55652;55653 55649 8 TTQPSINESESDPFEVVR DELRMMIAKEENLQRTTQPSINESESDPFE PSINESESDPFEVVRDDFKSGVHKLHSLIG R T T V R D 0 1 1 1 0 1 3 0 0 1 0 0 0 1 2 3 2 0 0 2 0 0 18 0 2033.9542 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50;F5GWN9 A0A024R250 327 344 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 1.4464E-06 86.291 2 0.82281 0.83135 NaN 1 Median 0.82281 0.83135 NaN 1 0 Median NaN NaN NaN 0 0 Median 7719500 3828000 3891500 7719500 3828000 3891500 0 0 0 13485 104 13855 35602;35603 55654;55655 55655 2 TTQPSINESESDPFEVVRDDFK DELRMMIAKEENLQRTTQPSINESESDPFE ESESDPFEVVRDDFKSGVHKLHSLIGLGIK R T T F K S 0 1 1 3 0 1 3 0 0 1 0 1 0 2 2 3 2 0 0 2 0 0 22 1 2539.1714 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50;F5GWN9 A0A024R250 327 348 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 3 3.671E-07 49.577 2 2 1.3625 1.2827 5.8914 4 Median 1.1911 1.3083 9.7778 2 0 Median 1.5057 1.2827 2.1509 2 0 Median 49867000 21226000 28641000 27042000 12412000 14629000 22825000 8813400 14012000 13486 104 13856 35604;35605;35606;35607 55656;55657;55658;55659 55658 4 TTQVPQFILDDFIQNDR QNSVVIIRGATGCGKTTQVPQFILDDFIQN QVPQFILDDFIQNDRAAECNIVVTQPRRIS K T T D R A 0 1 1 3 0 3 0 0 0 2 1 0 0 2 1 0 2 0 0 1 0 0 17 0 2049.0167 Q08211;Q58F26;Q6PJK6 Q08211 418 434 DHX9 ATP-dependent RNA helicase A yes no 2 7.722E-18 126.63 2 1 1.3046 1.4813 12.919 3 Median 1.2962 1.4987 1.6516 2 0 Median 1.3742 1.1993 NaN 1 0 Median 461380000 200730000 260650000 386230000 169730000 216500000 75152000 31000000 44152000 13487 1691 13857 35608;35609;35610 55660;55661;55662;55663;55664;55665 55664 6 TTSHLLR QISLKQVLTALLNSRTTSHLLRYRQAAKPP LTALLNSRTTSHLLRYRQAAKPPDLNPETE R T T L R Y 0 1 0 0 0 0 0 0 1 0 2 0 0 0 0 1 2 0 0 0 0 0 7 0 826.4661 Q03164 Q03164 1656 1662 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.026711 76.847 1 0.71119 0.74737 NaN 1 Median 0.71119 0.74737 NaN 1 0 Median NaN NaN NaN 0 0 Median 11586000 6268100 5317600 11586000 6268100 5317600 0 0 0 13488 1680 13858 35611 55666 55666 1 TTSSAIYMNLASHIQPGTVNR PKPGLQSSSSVPCQRTTSSAIYMNLASHIQ YMNLASHIQPGTVNRVSSPLPSPSAMTDAA R T T N R V 2 1 2 0 0 1 0 1 1 2 1 0 1 0 1 3 3 0 1 1 0 0 21 0 2260.127 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 295 315 GATAD2B Transcriptional repressor p66-beta yes no 3 3.9807E-16 106.49 3 0.85202 0.90592 13.642 2 Median 0.85202 0.90592 13.642 2 0 Median NaN NaN NaN 0 0 Median 59806000 24724000 35082000 59806000 24724000 35082000 0 0 0 13489 591 13859 35612;35613;35614 55667;55668;55669 55668 449 3 TTTAAAVASTGPSSR PASRSGSKSTQTVAKTTTAAAVASTGPSSR TTTAAAVASTGPSSRSPSTLLPKKPTAIKT K T T S R S 4 1 0 0 0 0 0 1 0 0 0 0 0 0 1 3 4 0 0 1 0 0 15 0 1376.6896 H0Y2V1;A0A024R2V0;F8W9U4;Q86Y04;E7EVA0;P27816;H7C4C5;B5MEG9 H0Y2V1 176 190 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 4.1267E-07 101.71 1 1 0.99948 0.8829 NaN 1 Median NaN NaN NaN 0 0 Median 0.99948 0.8829 NaN 1 0 Median 1470300 709620 760690 0 0 0 1470300 709620 760690 13490 123 13860 35615;35616 55670;55671;55672;55673 55670 4 TTTGPPHLVPPQPLPR EKSNSQVPQQSHFTKTTTGPPHLVPPQPLP TTGPPHLVPPQPLPRRGTQPVGSLELKSAC K T T P R R 0 1 0 0 0 1 0 1 1 0 2 0 0 0 6 0 3 0 0 1 0 0 16 0 1706.9468 A0A024R0F1;Q9UNY4 A0A024R0F1 482 497 TTF2 Transcription termination factor 2 yes no 3 4.7347E-05 73.887 2 2 1.1051 1.0715 34.01 4 Median 0.75598 0.79966 5.726 2 0 Median 1.6932 1.4335 5.4936 2 0 Median 88826000 48311000 40515000 74529000 43173000 31356000 14297000 5138200 9158500 13491 44 13861 35617;35618;35619;35620 55674;55675;55676;55677;55678;55679;55680;55681 55676 8 TTTIYEEDK KKNKTLEYKIEILEKTTTIYEEDKRNLQQE IEILEKTTTIYEEDKRNLQQELETQNQKLQ K T T D K R 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 3 0 1 0 0 0 9 0 1098.5081 H7BYN4;Q02241 H7BYN4 578 586 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.0011834 88.819 1 1.1594 1.1407 NaN 1 Median 1.1594 1.1407 NaN 1 0 Median NaN NaN NaN 0 0 Median 23849000 14217000 9631500 23849000 14217000 9631500 0 0 0 13492 1312 13862 35621 55682 55682 1 TTTIYEEDKR KKNKTLEYKIEILEKTTTIYEEDKRNLQQE EILEKTTTIYEEDKRNLQQELETQNQKLQR K T T K R N 0 1 0 1 0 0 2 0 0 1 0 1 0 0 0 0 3 0 1 0 0 0 10 1 1254.6092 H7BYN4;Q02241 H7BYN4 578 587 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.0088812 64.654 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1193000 0 1193000 0 0 0 1193000 0 1193000 13493 1312 13863 35622 55683 55683 1 TTTLSGTAPAAGVVPSR DLSRPKSTSTSSMKKTTTLSGTAPAAGVVP TLSGTAPAAGVVPSRVKATPMPSRPSTTPF K T T S R V 3 1 0 0 0 0 0 2 0 0 1 0 0 0 2 2 4 0 0 2 0 0 17 0 1584.8471 H0Y2V1;A0A024R2V0;F8W9U4;Q86Y04;E7EVA0;P27816;B4DSQ1;H7C4C5;B5MEG9 H0Y2V1 238 254 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 1.4073E-06 80.469 2 1 1.1585 1.0771 25.624 2 Median 1.2877 1.2911 NaN 1 0 Median 1.0423 0.89861 NaN 1 0 Median 27254000 9232000 18022000 24601000 7949300 16651000 2653700 1282600 1371100 13494 123 13864 35623;35624;35625 55684;55685;55686;55687;55688 55684 5 TTTPGPSLSQGVSVDEK KNYCDPQGHPSTGLKTTTPGPSLSQGVSVD TPGPSLSQGVSVDEKLMPSAPVNTTTYVAD K T T E K L 0 0 0 1 0 1 1 2 0 0 1 1 0 0 2 3 3 0 0 2 0 0 17 0 1701.8421 A0PJ71;A0A0C4DG07;A8K1D3;A6H8Y5;O60934 A0PJ71 335 351 NBN Nibrin yes no 2 6.7271E-05 72.496 1 0.82577 0.81767 NaN 1 Median 0.82577 0.81767 NaN 1 0 Median NaN NaN NaN 0 0 Median 9465600 5015400 4450200 9465600 5015400 4450200 0 0 0 13495 509 13865 35626 55689;55690;55691;55692;55693;55694 55691 6 TTTVNIGSISTADGSALVK KENCRPDGRELGEFRTTTVNIGSISTADGS NIGSISTADGSALVKLGNTTVICGVKAEFA R T T V K L 2 0 1 1 0 0 0 2 0 2 1 1 0 0 0 3 4 0 0 2 0 0 19 0 1833.9684 Q96B26;Q5JXM0 Q96B26 34 52 EXOSC8;DKFZp564C0482 Exosome complex component RRP43 yes no 2 2.9863E-17 123.02 2 2 0.92892 0.8985 9.9498 4 Median 0.88433 0.96144 1.7379 2 0 Median 1.0162 0.81743 5.535 2 0 Median 119270000 63461000 55810000 75001000 41281000 33720000 44269000 22179000 22090000 13496 1959 13866 35627;35628;35629;35630 55695;55696;55697;55698;55699;55700;55701;55702;55703 55698 9 TTVPQLLASVQR EEQRRGLLEDVQEGRTTVPQLLASVQRWVQ EGRTTVPQLLASVQRWVQETKLLAQARVMV R T T Q R W 1 1 0 0 0 2 0 0 0 0 2 0 0 0 1 1 2 0 0 2 0 0 12 0 1311.751 A0A075B730;A0A087X1U6;P58107 A0A075B730 1145 1156 EPPK1 Epiplakin no no 2 0.0053086 51.276 1 2.1535 1.8807 NaN 1 Median NaN NaN NaN 0 0 Median 2.1535 1.8807 NaN 1 0 Median 2577200 764820 1812400 0 0 0 2577200 764820 1812400 13497 397;1622 13867 35631 55704 55704 1 TTYLVLDEADR RLIDFLECGKTNLRRTTYLVLDEADRMLDM NLRRTTYLVLDEADRMLDMGFEPQIRKIVD R T T D R M 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 0 2 0 1 1 0 0 11 0 1294.6405 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;B4DNG2;J3KRZ1;J3QSF1 B4DN41 231 241 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 1.8556E-12 142.43 2 2 1.2332 1.2062 28.222 4 Median 1.3654 1.531 0.11843 2 0 Median 1.1138 0.93936 1.7526 2 0 Median 139880000 59528000 80353000 123550000 51783000 71770000 16328000 7745400 8582500 13498 1009 13868 35632;35633;35634;35635 55705;55706;55707;55708;55709;55710;55711;55712 55705 8 TVAAPSVFIFPPSDEQLK RPPTLGQGTKVEIKRTVAAPSVFIFPPSDE APSVFIFPPSDEQLKSGTASVVCLLNNFYP R T V L K S 2 0 0 1 0 1 1 0 0 1 1 1 0 2 3 2 1 0 0 2 0 0 18 0 1945.0197 Q0KKI6;V9HW34;Q6PJF2;Q7Z3Y4;Q6PIL8;Q6P5S8;Q6GMX0;Q8TCD0;P01834;S6AWD6;S6AWF4;S6BGE9;S6AWD3;S6C4R6;S6B2A1;S6B2C3;S6B294;S6AWE3;Q569I7;Q5EFE6 Q0KKI6 114 131 HEL-213;IGK@;IGKC Ig kappa chain C region yes no 2 0.031039 40.113 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1357100 1357100 0 0 0 0 1357100 1357100 0 13499 1439 13869 35636;35637 55713;55714 55713 2 TVAGGAWTYNTTSAVTVK KRRAVGIWHCGSCMKTVAGGAWTYNTTSAV GGAWTYNTTSAVTVKSAIRRLKELKDQ___ K T V V K S 3 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 5 1 1 3 0 0 18 0 1825.921 C9J4Z3;P61513 C9J4Z3 39 56 RPL37A 60S ribosomal protein L37a yes no 2 8.912E-30 140.1 3 2 0.76015 0.75701 6.0822 4 Median 0.68733 0.79222 2.0922 2 0 Median 0.83653 0.71801 3.1411 2 0 Median 611920000 350630000 261290000 409120000 240180000 168930000 202800000 110450000 92352000 13500 1129 13870 35638;35639;35640;35641;35642 55715;55716;55717;55718;55719;55720;55721;55722;55723;55724;55725;55726;55727;55728;55729;55730;55731;55732;55733 55724 19 TVAGQDAVIVLLGTR HVVVGDVLQAADVDKTVAGQDAVIVLLGTR TVAGQDAVIVLLGTRNDLSPTTVMSEGARN K T V T R N 2 1 0 1 0 1 0 2 0 1 2 0 0 0 0 0 2 0 0 3 0 0 15 0 1511.8671 V9HWI1;P30043;M0QZL1;M0R192 V9HWI1 64 78 HEL-S-10;BLVRB Flavin reductase (NADPH) yes no 2 3.8272E-07 104.87 2 2 2.27 2.3719 53.226 4 Linear 2.1937 2.2707 0.31824 2 0 Median 1.0723 0.90324 0.62886 2 0 Median 60045000 19873000 40172000 48369000 13760000 34609000 11676000 6112600 5563100 13501 1528 13871 35643;35644;35645;35646 55734;55735;55736;55737;55738;55739;55740;55741;55742;55743 55738 10 TVALDGTLFQK EDARRIAFGGHQRHKTVALDGTLFQKSGVI QRHKTVALDGTLFQKSGVISGGASDLKAKA K T V Q K S 1 0 0 1 0 1 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 11 0 1191.6499 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709 Q14683 638 648 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.022079 52.579 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13502 1739 13872 35647;35648 55744;55745 55745 2 TVALWDLR NPYSEFILATGSADKTVALWDLRNLKLKLH ATGSADKTVALWDLRNLKLKLHTFESHKDE K T V L R N 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 1 0 0 8 0 972.53927 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5;B4DRT0;Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP02 Q6FHQ0 296 303 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.010329 72.485 3 2 1.6335 1.38 21.596 3 Median 0.81669 0.94944 NaN 1 0 Median 1.6547 1.3801 0.013266 2 0 Median 339180000 230800000 108380000 303110000 217360000 85744000 36075000 13440000 22635000 13503 1771;1695 13873 35649;35650;35651;35652;35653 55746;55747;55748;55749;55750;55751;55752;55753 55746 8 TVAPMPPAQDHK LDGEEVSCLCFTDGKTVAPMPPAQDHKRLL DGKTVAPMPPAQDHKRLLEGDGGPNTGGMG K T V H K R 2 0 0 1 0 1 0 0 1 0 0 1 1 0 3 0 1 0 0 1 0 0 12 0 1290.6391 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;H7C366 Q3B7A7 208 219 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.016274 41.54 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3851800 0 3851800 3851800 0 3851800 0 0 0 13504 1507 13874 35654 55754 55754 1276 1 TVAQSQQLETNSQR DAGNSDRVVIQEMLKTVAQSQQLETNSQRD KTVAQSQQLETNSQRDFKVVLLTEVDKLTK K T V Q R D 1 1 1 0 0 4 1 0 0 0 1 0 0 0 0 2 2 0 0 1 0 0 14 0 1588.7805 B4DKE6;Q53HK8;A0A024RDQ8;P40938;Q5U0C2 B4DKE6 114 127 RFC3 Replication factor C subunit 3 yes no 2 1.5724E-46 180.09 2 2 1.0905 0.7422 22.683 3 Plateau 1.0911 1.0937 NaN 1 0 Median 0.84117 0.73844 0.71814 2 0 Median 28844000 11481000 17363000 24571000 9183000 15388000 4273200 2297900 1975200 13505 391 13875 35655;35656;35657;35658 55755;55756;55757;55758;55759;55760 55757 6 TVASTAMNSQSSR ALDTVSCLEQGNNSRTVASTAMNSQSSRSH SRTVASTAMNSQSSRSHAIFTISLEQRKKS R T V S R S 2 1 1 0 0 1 0 0 0 0 0 0 1 0 0 4 2 0 0 1 0 0 13 0 1338.6198 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 202 214 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0041837 48.741 2 1.8183 1.5575 5.5407 2 Median NaN NaN NaN 0 0 Median 1.8183 1.5575 5.5407 2 0 Median 5459200 1788700 3670500 0 0 0 5459200 1788700 3670500 13506 1803 13876 35659;35660 55761;55762;55763 55763 3 TVAVASGAASTPISISTGAPTVR TSAVSLPSMNAAVSKTVAVASGAASTPISI ASTPISISTGAPTVRQVPVSTTVVSTSQAG K T V V R Q 5 1 0 0 0 0 0 2 0 2 0 0 0 0 2 4 4 0 0 3 0 0 23 0 2113.1379 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1141 1163 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.003149 28.546 1 1.5549 1.3184 NaN 1 Median NaN NaN NaN 0 0 Median 1.5549 1.3184 NaN 1 0 Median 2917800 1473700 1444000 0 0 0 2917800 1473700 1444000 13507 135 13877 35661 55764 55764 1 TVAVIGGISR IEEETIKFGKPLGIRTVAVIGGISREDQGF PLGIRTVAVIGGISREDQGFRLRMGCEIVI R T V S R E 1 1 0 0 0 0 0 2 0 2 0 0 0 0 0 1 1 0 0 2 0 0 10 0 971.57638 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 479 488 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0043374 61.65 2 1 0.91615 0.94943 NaN 1 Median 0.91615 0.94943 NaN 1 0 Median NaN NaN NaN 0 0 Median 20528000 12886000 7642500 20528000 12886000 7642500 0 0 0 13508 63 13878 35662;35663;35664 55765;55766;55767 55765 3 TVAVWDSETGER YNTDGSMLFSASTDKTVAVWDSETGERVKR TDKTVAVWDSETGERVKRLKGHTSFVNSCY K T V E R V 1 1 0 1 0 0 2 1 0 0 0 0 0 0 0 1 2 1 0 2 0 0 12 0 1348.6259 B2R9I9;A0MNP2;Q96DI7 B2R9I9 132 143 WDR57;SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2 0.005312 51.268 1 0.84498 0.73618 NaN 1 Median NaN NaN NaN 0 0 Median 0.84498 0.73618 NaN 1 0 Median 1896800 1024300 872450 0 0 0 1896800 1024300 872450 13509 643 13879 35665 55768;55769 55769 2 TVCAEYAIALALR NNQSVLVSAHTSAGKTVCAEYAIALALREK GKTVCAEYAIALALREKQRVIFTSPIKALS K T V L R E 4 1 0 0 1 0 1 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 13 0 1449.765 P42285;A8K6I4;B4E3M6 P42285 168 180 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.0044591 61.353 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2053400 2053400 0 0 0 0 2053400 2053400 0 13510 1563 13880 35666;35667 55770;55771;55772;55773 55770 4 TVDFTQDSNYLLTGGQDK SGDELMTLAHKHIVKTVDFTQDSNYLLTGG FTQDSNYLLTGGQDKLLRIYDLNKPEAEPK K T V D K L 0 0 1 3 0 2 0 2 0 0 2 1 0 1 0 1 3 0 1 1 0 0 18 0 2000.9327 Q9Y3F4;B0AZV0 Q9Y3F4 105 122 STRAP Serine-threonine kinase receptor-associated protein yes no 2 2.0965E-05 65.805 1 3.9262 4.237 NaN 1 Median 3.9262 4.237 NaN 1 0 Median NaN NaN NaN 0 0 Median 21816000 5735300 16081000 21816000 5735300 16081000 0 0 0 13511 2136 13881 35668 55774 55774 0 TVDSQGPTPVCTPTFLER KKKKKVSGTLDTPEKTVDSQGPTPVCTPTF SQGPTPVCTPTFLERRKSQVAELNDDDKDD K T V E R R 0 1 0 1 1 1 1 1 0 0 1 0 0 1 3 1 4 0 0 2 0 0 18 0 2003.9622 Q9BYG3;C9J808;H7BZL0 Q9BYG3 227 244 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 2.5967E-17 148.91 2 2 1.1092 1.0739 12.534 4 Median 1.0794 1.212 4.2065 2 0 Median 1.1316 0.97954 0.10472 2 0 Median 273580000 136840000 136740000 173220000 89773000 83443000 100370000 47068000 53301000 13512 2019 13882 35669;35670;35671;35672 55775;55776;55777;55778;55779;55780;55781;55782 55775 8 TVEELLETGLIQVATK EQMEKCIQEKDEKLKTVEELLETGLIQVAT VEELLETGLIQVATKEEELNAIRTENSSLT K T V T K E 1 0 0 0 0 1 3 1 0 1 3 1 0 0 0 0 3 0 0 2 0 0 16 0 1742.9666 A0A024R663;Q86UP2;G3V4Y7;H0YJZ8 A0A024R663 746 761 KTN1 Kinectin yes no 2 0.0019891 79.82 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1779500 1779500 0 1779500 1779500 0 0 0 0 13513 197 13883 35673 55783 55783 1 TVEFQHIIPISAVTGEGIEELK KDFLHLFEKNMIPERTVEFQHIIPISAVTG IPISAVTGEGIEELKNCIRKSLDEQANQEN R T V L K N 1 0 0 0 0 1 4 2 1 4 1 1 0 1 1 1 2 0 0 2 0 0 22 0 2409.2791 A4D1E9 A4D1E9 315 336 GTPBP10 GTP-binding protein 10 yes yes 3 0.0006279 32.337 1 2 0.64607 0.67519 33.556 3 Plateau 0.64607 0.67519 NaN 1 0 Median 0.5362 0.4276 29.342 2 0 Median 20933000 11255000 9677500 10151000 5285300 4865500 10782000 5970200 4811900 13514 663 13884 35674;35675;35676 55784;55785;55786;55787;55788;55789 55784 6 TVEGEFTGVGK VDEIVVFDEEGQDAKTVEGEFTGVGKKGQA QDAKTVEGEFTGVGKKGQACVQLARILQYL K T V G K K 0 0 0 0 0 0 2 3 0 0 0 1 0 1 0 0 2 0 0 2 0 0 11 0 1122.5557 Q5T280 Q5T280 124 134 C9orf114 Putative methyltransferase C9orf114 yes yes 2 0.038665 54.416 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13515 1819 13885 35677 55790 55790 1 TVEICPFSFDSR PHYGVPFKPQIPEARTVEICPFSFDSRDKE EARTVEICPFSFDSRDKERQLQKEKKIKEL R T V S R D 0 1 0 1 1 0 1 0 0 1 0 0 0 2 1 2 1 0 0 1 0 0 12 0 1456.6657 Q643R0;Q9ULW0;B3KM90 Q643R0 532 543 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 3.0918E-08 118.4 1 2 1.2755 1.0439 33.144 3 Median 0.59795 0.59173 NaN 1 0 Median 1.2827 1.0505 0.89319 2 0 Median 42223000 21150000 21073000 15382000 9293400 6088700 26841000 11857000 14984000 13516 1837 13886 35678;35679;35680 55791;55792;55793;55794;55795 55795 5 TVELPLNK LATVKKQLSRVKSKKTVELPLNKEEIERIH SRVKSKKTVELPLNKEEIERIHREVAFNKT K T V N K E 0 0 1 0 0 0 1 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 8 0 912.52803 Q9BVJ6;B4E343;O60531 Q9BVJ6 115 122 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.034605 49.358 1 1.4994 1.2304 NaN 1 Median NaN NaN NaN 0 0 Median 1.4994 1.2304 NaN 1 0 Median 5159400 1970400 3189000 0 0 0 5159400 1970400 3189000 13517 2008 13887 35681 55796 55796 1 TVEPLEYYR ______________________________ MAAGFKTVEPLEYYRRFLKENCRPDGRELG K T V Y R R 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 0 1 0 2 1 0 0 9 0 1168.5764 Q96B26;Q5JXM0 Q96B26 7 15 EXOSC8;DKFZp564C0482 Exosome complex component RRP43 yes no 2 0.0031039 81.548 2 1 0.7215 0.72486 11.316 3 Plateau 0.68013 0.72486 12.188 2 0 Median 0.7523 0.63839 NaN 1 0 Median 60083000 34080000 26003000 54934000 31515000 23419000 5149800 2565000 2584800 13518 1959 13888 35682;35683;35684 55797;55798;55799 55797 3 TVESEAASYLDQISR LIEKCNTEETVAELRTVESEAASYLDQISR TVESEAASYLDQISRYYITRAKLVSKIAKY R T V S R Y 2 1 0 1 0 1 2 0 0 1 1 0 0 0 0 3 1 0 1 1 0 0 15 0 1667.8002 K7ENH2;B3KQ25;K7ESG5;K9J957;V9HWJ8;Q6FHK7;A0A024R203;P61289;J7FRP4;A0A087WTV2 K7ENH2 144 158 PSME3;HEL-S-283 Proteasome activator complex subunit 3 yes no 2 0.013716 49.448 1 1.0641 1.0744 NaN 1 Median 1.0641 1.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median 10176000 5021200 5154400 10176000 5021200 5154400 0 0 0 13519 99 13889 35685 55800 55800 0 TVETVEGGGLVVILLR VLQDFEALTPNLLARTVETVEGGGLVVILL VETVEGGGLVVILLRTMNSLKQLYTVTMDV R T V L R T 0 1 0 0 0 0 2 3 0 1 3 0 0 0 0 0 2 0 0 4 0 0 16 0 1653.9665 Q05CW7;E9PMU0;Q9H0A0 Q9H0A0 137 152 NAT10 N-acetyltransferase 10 no no 2 0.0034464 56.359 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12119000 7816100 4302900 12119000 7816100 4302900 0 0 0 13520 2023;1687 13890 35686;35687 55801;55802 55802 2 TVFAEHISDECK IVGYVETPRGLRTFKTVFAEHISDECKRRF TFKTVFAEHISDECKRRFYKNWHKSKKKAF K T V C K R 1 0 0 1 1 0 2 0 1 1 0 1 0 1 0 1 1 0 0 1 0 0 12 0 1434.6449 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;H7C422;H7C3M2;B5MCW2;B4DN06;F8WCR1;B3KS36 P39023 104 115 RPL3;rpl3 60S ribosomal protein L3 no no 2;3 1.194E-48 248.68 4 4 0.95466 0.95166 11.029 8 Median 0.88777 1.0419 2.4492 4 0 Median 1.0379 0.85181 3.8086 4 0 Median 1717400000 896270000 821120000 1543500000 811980000 731500000 173910000 84290000 89620000 13521 1554;936 13891 35688;35689;35690;35691;35692;35693;35694;35695 55803;55804;55805;55806;55807;55808;55809;55810;55811;55812;55813;55814;55815;55816;55817;55818;55819;55820;55821;55822;55823 55805 21 TVFHEEFIHYLK LVVALSRTYRTMDDKTVFHEEFIHYLKYVM DDKTVFHEEFIHYLKYVMVVYKREPAVERV K T V L K Y 0 0 0 0 0 0 2 0 2 1 1 1 0 2 0 0 1 0 1 1 0 0 12 0 1561.7929 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 42 53 NCAPG Condensin complex subunit 3 yes no 3 9.1591E-05 66.498 2 1.638 1.2936 1.1773 2 Median NaN NaN NaN 0 0 Median 1.638 1.2936 1.1773 2 0 Median 30258000 10825000 19433000 0 0 0 30258000 10825000 19433000 13522 1995 13892 35696;35697 55824;55825;55826;55827;55828 55828 5 TVFRPPLDIYDVLIR LEKQLMDPRGPGDIRTVFRPPLDIYDVLIR TVFRPPLDIYDVLIRLSPRHIPRHRQAVDS R T V I R L 0 2 0 2 0 0 0 0 0 2 2 0 0 1 2 0 1 0 1 2 0 0 15 1 1816.0247 Q9H6R4;B4DF80;B3KPN5;A0A0C4DFX0 Q9H6R4 999 1013 NOL6 Nucleolar protein 6 yes no 3 4.7678E-05 82.259 3 2 1.1527 1.1588 3.301 4 Median 1.0252 1.126 0.5571 2 0 Median 1.3781 1.1917 0.45382 2 0 Median 216610000 92852000 123760000 45040000 21994000 23045000 171570000 70857000 100720000 13523 2038 13893 35698;35699;35700;35701;35702 55829;55830;55831;55832;55833;55834;55835;55836;55837;55838;55839;55840;55841 55838 13 TVFSPTLPAAR KSLTSWTNDQGARRKTVFSPTLPAARSSLG ARRKTVFSPTLPAARSSLGSLQTPEAVTTR K T V A R S 2 1 0 0 0 0 0 0 0 0 1 0 0 1 2 1 2 0 0 1 0 0 11 0 1158.6397 Q7Z2W4;A8K9U6;C9J6P4;Q05DV5 Q7Z2W4 375 385 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.028617 59.931 1 1.4752 1.4545 NaN 1 Median 1.4752 1.4545 NaN 1 0 Median NaN NaN NaN 0 0 Median 14719000 6750900 7968500 14719000 6750900 7968500 0 0 0 13524 1873 13894 35703 55842 55842 0 TVGALQVLGTEAQSSLLK LLAALECYNTFIGERTVGALQVLGTEAQSS ALQVLGTEAQSSLLKAVAFFLESIAMHDII R T V L K A 2 0 0 0 0 2 1 2 0 0 4 1 0 0 0 2 2 0 0 2 0 0 18 0 1814.0149 P78527 P78527 1275 1292 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.5526E-107 214.23 2 2 0.45629 0.43157 55.555 4 Median 0.63768 0.70897 5.0569 2 0 Median 0.33036 0.27122 0.54978 2 0 Median 192360000 124730000 67630000 127800000 76012000 51792000 64557000 48718000 15839000 13525 1665 13895 35704;35705;35706;35707 55843;55844;55845;55846;55847;55848;55849;55850;55851;55852;55853;55854 55844 12 TVGATALPR LVRLNSKWDLRRLCKTVGATALPRLTPPVL LRRLCKTVGATALPRLTPPVLEEMGHCDSV K T V P R L 2 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 2 0 0 1 0 0 9 0 884.50797 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 276 284 CCT8 T-complex protein 1 subunit theta yes no 2 0.020367 58.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6964100 0 6964100 6964100 0 6964100 0 0 0 13526 1592 13896 35708 55855 55855 1 TVGQLYK TALPGAFKTRKGMFRTVGQLYKEQLAKLMA KTRKGMFRTVGQLYKEQLAKLMATLRNTNP R T V Y K E 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 7 0 807.44905 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;A0A024QZJ6;A0A024QZJ4;B1PS43;P35749;P35580;Q7Z406;M0QY43;B3KWH4 A0A024R1N1 645 651 MYH9;MYH11;MYH10;MYH14 Myosin-9;Myosin-11;Myosin-10;Myosin-14 no no 2 0.026905 82.263 2 1.5514 1.7399 NaN 1 Median 1.5514 1.7399 NaN 1 0 Median NaN NaN NaN 0 0 Median 212530000 44059000 168470000 212530000 44059000 168470000 0 0 0 13527 81;1544;1875 13897 35709;35710 55856;55857 55857 2 TVGVEPAADGK KARNSFRYNGLIHRKTVGVEPAADGKGVVV IHRKTVGVEPAADGKGVVVVIKRRSGQRKP K T V G K G 2 0 0 1 0 0 1 2 0 0 0 1 0 0 1 0 1 0 0 2 0 0 11 0 1042.5295 P46779;H0YKD8;H0YLP6;H0YMF4;Q59F34 P46779 48 58 RPL28 60S ribosomal protein L28 yes no 2 1.0592E-08 127.76 2 2 0.93184 1.089 19.385 4 Linear 0.92491 1.0826 1.3239 2 0 Median 0.96863 0.77425 1.4042 2 0 Median 623840000 330000000 293840000 599080000 317530000 281550000 24766000 12475000 12291000 13528 1572 13898 35711;35712;35713;35714 55858;55859;55860;55861;55862;55863;55864;55865 55860 8 TVIESSPESPVTITEPYR ASGSNNAVIYVHNLKTVIESSPESPVTITE ESSPESPVTITEPYRTLSGHTAKITSVAWS K T V Y R T 0 1 0 0 0 0 3 0 0 2 0 0 0 0 3 3 3 0 1 2 0 0 18 0 2004.0052 B7ZLC9;Q8TEQ6;Q58EZ8 B7ZLC9 615 632 GEMIN5 Gem-associated protein 5 yes no 2 2.5634E-05 72.705 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4724300 0 4724300 4724300 0 4724300 0 0 0 13529 1114 13899 35715;35716;35717 55866;55867;55868;55869 55866 4 TVINFTMPNTIK ATDVAARGLDIEGVKTVINFTMPNTIKHYV GVKTVINFTMPNTIKHYVHRVGRTARAGRA K T V I K H 0 0 2 0 0 0 0 0 0 2 0 1 1 1 1 0 3 0 0 1 0 0 12 0 1377.7326 B3GQE6;B7Z6D5;Q96GQ7 B3GQE6 503 514 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 3.8808E-05 96.957 1 2 1.813 1.7162 20.081 2 Median 1.3255 1.489 NaN 1 0 Median 2.4799 1.9781 NaN 1 0 Median 79495000 34735000 44760000 69089000 29438000 39651000 10406000 5297000 5109200 13530 899;1099 13900;13901 35718;35719;35720 55870;55871;55872;55873;55874;55875 55870 723 6 TVITPDPNLSIDQVGVPR VRGNLMGKRVDFSARTVITPDPNLSIDQVG TPDPNLSIDQVGVPRSIAANMTFAEIVTPF R T V P R S 0 1 1 2 0 1 0 1 0 2 1 0 0 0 3 1 2 0 0 3 0 0 18 0 1920.0316 P24928;A0A087WWE2 P24928 365 382 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 2 5.6332E-05 56.122 2 0.93954 0.96674 25.029 2 Median 0.93954 0.96674 25.029 2 0 Median NaN NaN NaN 0 0 Median 20446000 11582000 8863900 20446000 11582000 8863900 0 0 0 13531 1514 13902 35721;35722 55876;55877;55878 55878 3 TVIVAALDGTFQR PDIVEFCEAMANAGKTVIVAALDGTFQRKP GKTVIVAALDGTFQRKPFGAILNLVPLAES K T V Q R K 2 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 2 0 0 2 0 0 13 0 1389.7616 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3;K7ES52;K7ERJ1 B5BUF9 118 130 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2 4.4689E-06 107.06 2 1 2.1539 2.4612 65.123 3 Plateau 2.2154 2.4003 3.5445 2 0 Median 0.87962 0.7776 NaN 1 0 Median 73678000 26853000 46824000 69845000 24304000 45542000 3832200 2549600 1282600 13532 252 13903 35723;35724;35725 55879;55880;55881 55880 3 TVLAAAYGEK LWILLILLFEQYVTKTVLAAAYGEKDAILE QYVTKTVLAAAYGEKDAILEADTEFWFSVC K T V E K D 3 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1021.5444 B2RWN5;Q9H583;Q5T3Q7;B4E263;B3KWS1;Q8N7L7 B2RWN5 1427 1436 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0021508 70.399 2 2 1.2226 1.0415 5.2912 3 Median 0.92455 1.0415 NaN 1 0 Median 1.2548 1.0075 6.9728 2 0 Median 144480000 69612000 74867000 123350000 60294000 63056000 21129000 9318700 11811000 13533 897 13904 35726;35727;35728;35729 55882;55883;55884;55885;55886;55887;55888 55884 7 TVLCGTCGQPADK CSSSGDPAEYNLRSRTVLCGTCGQPADKAS SRTVLCGTCGQPADKASASGSGAQVGGPIS R T V D K A 1 0 0 1 2 1 0 2 0 0 1 1 0 0 1 0 2 0 0 1 0 0 13 0 1405.633 P02545;A0A0C4DGC5 P02545 585 597 LMNA Prelamin-A/C;Lamin-A/C yes no 2 1.2528E-30 172.8 2 2 1.3374 1.2765 13.454 4 Median 1.2605 1.4273 2.3723 2 0 Median 1.4195 1.1346 3.241 2 0 Median 264200000 108030000 156170000 229880000 93882000 136000000 34322000 14145000 20177000 13534 1440 13905 35730;35731;35732;35733 55889;55890;55891;55892;55893;55894;55895;55896;55897 55893 9 TVLDPVTGDLSDTR FLYLNIGLQNGVLLRTVLDPVTGDLSDTRT RTVLDPVTGDLSDTRTRYLGSRPVKLFRVR R T V T R T 0 1 0 3 0 0 0 1 0 0 2 0 0 0 1 1 3 0 0 2 0 0 14 0 1487.7468 A8K6V3;Q15393;B3KQH1 A8K6V3 677 690 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.00010399 100.72 1 1.4439 1.4905 NaN 1 Median 1.4439 1.4905 NaN 1 0 Median NaN NaN NaN 0 0 Median 24007000 8474900 15532000 24007000 8474900 15532000 0 0 0 13535 764 13906 35734 55898;55899 55899 2 TVLDQQQTPSR QVRRDYLKEAVTTLKTVLDQQQTPSRLAVT TTLKTVLDQQQTPSRLAVTRVIQALAMKGD K T V S R L 0 1 0 1 0 3 0 0 0 0 1 0 0 0 1 1 2 0 0 1 0 0 11 0 1271.647 E5KNY5;P42704;B4DSR0 E5KNY5 1129 1139 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 7.6434E-32 187.55 2 2 1.6993 1.5949 46.658 4 Median 2.265 2.3942 5.066 2 0 Median 1.2369 1.0699 4.0886 2 0 Median 69864000 21777000 48086000 64551000 19423000 45128000 5313100 2354600 2958500 13536 1207 13907 35735;35736;35737;35738 55900;55901;55902;55903;55904;55905;55906;55907;55908;55909 55903 10 TVLDTSYALIGETVNNYR SHKPHPVETSQPSDKTVLDTSYALIGETVN DTSYALIGETVNNYRSTKYEMYSKNAEKPS K T V Y R S 1 1 2 1 0 0 1 1 0 1 2 0 0 0 0 1 3 0 2 2 0 0 18 0 2028.0164 Q03188;H0Y8J2 Q03188 379 396 CENPC Centromere protein C yes no 2 1.823E-05 73.927 1 1 0.6025 0.49956 NaN 1 Median NaN NaN NaN 0 0 Median 0.6025 0.49956 NaN 1 0 Median 26655000 11480000 15175000 6228000 0 6228000 20427000 11480000 8947100 13537 1681 13908 35739;35740 55910;55911;55912;55913;55914 55914 5 TVLEHYALEDDPLAAFK AFLKTIALNGVEDVRTVLEHYALEDDPLAA LEHYALEDDPLAAFKQRQSRLEQEEQQRLA R T V F K Q 3 0 0 2 0 0 2 0 1 0 3 1 0 1 1 0 1 0 1 1 0 0 17 0 1930.9676 Q0VAB1;A0A024R0M6;Q3ZCQ8;M0R0C3;M0R2F8 Q0VAB1 399 415 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 3 0.00044596 37.157 2 1.9967 2.0417 28.147 2 Median 1.9967 2.0417 28.147 2 0 Median NaN NaN NaN 0 0 Median 23121000 7532900 15588000 23121000 7532900 15588000 0 0 0 13538 53 13909 35741;35742 55915;55916 55915 2 TVLFTNAR FATETFAMGINMPARTVLFTNARKFDGKDF GINMPARTVLFTNARKFDGKDFRWISSGEY R T V A R K 1 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 1 0 0 8 0 920.50797 P42285;A8K6I4;B4E3M6 P42285 495 502 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.0098898 77.072 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17389000 0 17389000 17389000 0 17389000 0 0 0 13539 1563 13910 35743;35744 55917;55918 55918 2 TVLGTPEVLLGALPGAGGTQR VAISCQYRIATKDRKTVLGTPEVLLGALPG EVLLGALPGAGGTQRLPKMVGVPAALDMML K T V Q R L 2 1 0 0 0 1 1 5 0 0 4 0 0 0 2 0 3 0 0 2 0 0 21 0 2006.116 E9KL44;P40939 E9KL44 167 187 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 1.2808E-07 65.092 2 1.1374 1.2202 0.30119 2 Median 1.1374 1.2202 0.30119 2 0 Median NaN NaN NaN 0 0 Median 80440000 38137000 42303000 80440000 38137000 42303000 0 0 0 13540 1228 13911 35745;35746 55919;55920;55921;55922 55919 4 TVLHTGSAPSSSTPFNK VLDHLVIQRMDTTGKTVLHTGSAPSSSTPF LHTGSAPSSSTPFNKEELSAILKFGAEELF K T V N K E 1 0 1 0 0 0 0 1 1 0 1 1 0 1 2 4 3 0 0 1 0 0 17 0 1729.8635 O14646 O14646 946 962 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2;3 8.5757E-19 127.02 4 1 0.86408 0.73463 24.822 3 Median 0.65815 0.7033 34.922 2 0 Median 0.90527 0.73463 NaN 1 0 Median 67799000 36610000 31188000 64963000 34750000 30213000 2835400 1860000 975390 13541 1366 13912 35747;35748;35749;35750;35751 55923;55924;55925;55926;55927;55928 55926 6 TVLIACNVK CLPGKKGGYTSGTFRTVLIACNVKQMSKDA TSGTFRTVLIACNVKQMSKDAQPSFSAEDI R T V V K Q 1 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 9 0 1016.5689 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 258 266 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.05463 45.081 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13542 568 13913 35752 55929 55929 1 TVLPTVPESPEEEVK NRGRYVDGLFLPPSKTVLPTVPESPEEEVK TVLPTVPESPEEEVKASQLSVQQNKLSVQS K T V V K A 0 0 0 0 0 0 4 0 0 0 1 1 0 0 3 1 2 0 0 3 0 0 15 0 1652.8509 B4DLG2;O75152;E9PQ61;E9PBY7;Q0D2N5 B4DLG2 46 60 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.00035806 59.198 2 1 1.906 1.9368 15.313 3 Plateau 1.9016 1.9368 11.707 2 0 Median 1.906 1.5494 NaN 1 0 Median 23333000 8698900 14634000 21434000 7985800 13448000 1899100 713130 1186000 13543 996 13914 35753;35754;35755 55930;55931;55932;55933;55934;55935;55936 55932 7 TVLQEIK LTTTSRAEFGDFDIKTVLQEIKRGKRMKCT EFGDFDIKTVLQEIKRGKRMKCTLCSQPGA K T V I K R 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 7 0 829.49092 A0A0D9SGE8;Q8IWS0;Q5JRC6;B4E138 A0A0D9SGE8 268 274 PHF6 PHD finger protein 6 yes no 2 0.031658 72.138 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25717000 0 25717000 25717000 0 25717000 0 0 0 13544 528 13915 35756 55937 55937 1 TVLQELINVLK FNMILKEQSLAAESKTVLQELINVLKTDLL AESKTVLQELINVLKTDLLSSLEMILSPTV K T V L K T 0 0 1 0 0 1 1 0 0 1 3 1 0 0 0 0 1 0 0 2 0 0 11 0 1268.7704 P52732;B2RAM6 P52732 619 629 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 3.3061E-08 120.15 2 2.4941 2.5022 NaN 1 Median 2.4941 2.5022 NaN 1 0 Median NaN NaN NaN 0 0 Median 29499000 5540700 23959000 29499000 5540700 23959000 0 0 0 13545 1602 13916 35757;35758 55938;55939;55940 55938 3 TVLQIDDNVTSAVEGINR YEALEKYPMAYVDYKTVLQIDDNVTSAVEG QIDDNVTSAVEGINRMTRALMDSLGPEWRL K T V N R M 1 1 2 2 0 1 1 1 0 2 1 0 0 0 0 1 2 0 0 3 0 0 18 0 1942.996 Q15785;B4DXU3 Q15785 110 127 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 1.8678E-09 88.561 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8585600 0 8585600 8585600 0 8585600 0 0 0 13546 1765 13917 35759 55941;55942 55942 2 TVLQLSLR LQKIYEANAKRFSRKTVLQLSLRILDILEY AKRFSRKTVLQLSLRILDILEYIHEHEYVH K T V L R I 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 8 0 928.57057 A8K245;Q99986;H0YJ50 A8K245 153 160 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0087985 77.072 2 1.6717 1.7788 NaN 1 Median 1.6717 1.7788 NaN 1 0 Median NaN NaN NaN 0 0 Median 43136000 22753000 20382000 43136000 22753000 20382000 0 0 0 13547 707 13918 35760;35761 55943;55944 55943 2 TVLVALDTVSCLEQGNNSR EDPKEGIKIVGLTEKTVLVALDTVSCLEQG ALDTVSCLEQGNNSRTVASTAMNSQSSRSH K T V S R T 1 1 2 1 1 1 1 1 0 0 3 0 0 0 0 2 2 0 0 3 0 0 19 0 2075.0317 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 183 201 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 5.9499E-23 134.88 2 2 0.57138 0.57687 10.06 2 Median 0.57138 0.57687 10.06 2 0 Median NaN NaN NaN 0 0 Median 54856000 26379000 28477000 47631000 26379000 21252000 7225400 0 7225400 13548 1803 13919 35762;35763;35764;35765 55945;55946;55947;55948 55945 4 TVLVNADGEEVAMR VWKGQSSWGTGESFRTVLVNADGEEVAMRT RTVLVNADGEEVAMRTVKKSSVMRENENGE R T V M R T 2 1 1 1 0 0 2 1 0 0 1 0 1 0 0 0 1 0 0 3 0 0 14 0 1502.7399 Q03252;A0A0A7M1X5 Q03252 562 575 LMNB2 Lamin-B2 yes no 2 0.034691 46.844 1 1.219 1.2645 NaN 1 Median 1.219 1.2645 NaN 1 0 Median NaN NaN NaN 0 0 Median 21921000 8769800 13151000 21921000 8769800 13151000 0 0 0 13549 1682 13920 35766 55949 55949 1499 0 TVNEDVEEMEIDEQTK YELLSEENKENGIIKTVNEDVEEMEIDEQT VNEDVEEMEIDEQTKVIVKDRLLGIKTETP K T V T K V 0 0 1 2 0 1 5 0 0 1 0 1 1 0 0 0 2 0 0 2 0 0 16 0 1907.8306 D3DS96;Q9NRL2;Q59G54 D3DS96 1029 1044 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 8.9059E-05 67.997 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6055100 0 6055100 6055100 0 6055100 0 0 0 13550 1187 13921 35767;35768 55950;55951 55950 904 2 TVNELQNLSSAEVVVPR VPSFAAGRVIGKGGKTVNELQNLSSAEVVV NELQNLSSAEVVVPRDQTPDENDQVVVKIT K T V P R D 1 1 2 0 0 1 2 0 0 0 2 0 0 0 1 2 1 0 0 4 0 0 17 0 1853.9847 O00425 O00425 509 525 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 2.4861E-34 192.18 2 2 1.3543 1.2544 34.295 4 Median 1.5879 1.633 3.1754 2 0 Median 1.077 0.91171 10.999 2 0 Median 62738000 24336000 38401000 55362000 21055000 34308000 7375300 3281500 4093800 13551 1364 13922 35769;35770;35771;35772 55952;55953;55954;55955;55956;55957;55958;55959;55960 55954 9 TVNELQNLTAAEVVVPR VPASAAGRVIGKGGKTVNELQNLTAAEVVV NELQNLTAAEVVVPRDQTPDENDQVIVKII K T V P R D 2 1 2 0 0 1 2 0 0 0 2 0 0 0 1 0 2 0 0 4 0 0 17 0 1852.0054 Q9NZI8;D3DTW3 Q9NZI8 509 525 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 1.6252E-13 124.3 3 2 2.0872 1.8097 31.398 5 Median 2.652 2.7216 38.628 3 0 Median 1.9746 1.6892 9.7428 2 0 Median 63211000 17855000 45356000 54110000 14928000 39181000 9101700 2926400 6175300 13552 2087 13923 35773;35774;35775;35776;35777 55961;55962;55963;55964;55965;55966;55967;55968;55969;55970;55971;55972;55973;55974 55964 14 TVNLNLWDTAGQEEYDR TVFDNYSAQSAVDGRTVNLNLWDTAGQEEY NLNLWDTAGQEEYDRLRTLSYPQTNVFVIC R T V D R L 1 1 2 2 0 1 2 1 0 0 2 0 0 0 0 0 2 1 1 1 0 0 17 0 2022.9283 Q6ICQ8;P84095 Q6ICQ8 50 66 ARHG;RHOG Rho-related GTP-binding protein RhoG yes no 2 0.0086685 42.809 2 1.1518 1.2023 NaN 1 Median 1.1518 1.2023 NaN 1 0 Median NaN NaN NaN 0 0 Median 4916100 2288400 2627600 4916100 2288400 2627600 0 0 0 13553 1672 13924 35778;35779 55975;55976 55975 2 TVNQQTMAAPVVK PLEPVSTVQVEPAVKTVNQQTMAAPVVKEE VKTVNQQTMAAPVVKEEKQPEKVISKDLVI K T V V K E 2 0 1 0 0 2 0 0 0 0 0 1 1 0 1 0 2 0 0 3 0 0 13 0 1385.7337 E7EPN9;Q9Y520;B4DM27 E7EPN9 1123 1135 PRRC2C Protein PRRC2C yes no 2 0.019756 42.336 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13554 1219 13925 35780 55977 55977 929 1 TVNVVQFEPSK TKVPLVAEKPLKEPKTVNVVQFEPSKGAIG KEPKTVNVVQFEPSKGAIGKAYKKDAKLVM K T V S K G 0 0 1 0 0 1 1 0 0 0 0 1 0 1 1 1 1 0 0 3 0 0 11 0 1246.6558 A0A090N8G0;P41250 A0A090N8G0 437 447 GARS Glycine--tRNA ligase yes no 2 8.4595E-06 109.42 2 3.7065 3.9003 NaN 1 Median 3.7065 3.9003 NaN 1 0 Median NaN NaN NaN 0 0 Median 55791000 7168300 48623000 55791000 7168300 48623000 0 0 0 13555 457 13926 35781;35782 55978;55979 55978 2 TVPEDTDPELVFLCR ALVPPSADYSTPPHRTVPEDTDPELVFLCR TVPEDTDPELVFLCRHVYDFRHGRILKNPQ R T V C R H 0 1 0 2 1 0 2 0 0 0 2 0 0 1 2 0 2 0 0 2 0 0 15 0 1789.8557 A0A024R9K2;Q8TBE0 A0A024R9K2 751 765 BAHD1 Bromo adjacent homology domain-containing 1 protein yes no 2 0.020132 31.185 1 0.59482 0.49925 NaN 1 Median NaN NaN NaN 0 0 Median 0.59482 0.49925 NaN 1 0 Median 4214800 2369300 1845500 0 0 0 4214800 2369300 1845500 13556 281 13927 35783 55980 55980 1 TVPEELVKPEELSK DKATVLTTERKKRGKTVPEELVKPEELSKY KTVPEELVKPEELSKYRQVASHVGLHSASI K T V S K Y 0 0 0 0 0 0 4 0 0 0 2 2 0 0 2 1 1 0 0 2 0 0 14 1 1596.8611 Q9UMS4;F5GY56;H0YGF3 Q9UMS4 193 206 PRPF19 Pre-mRNA-processing factor 19 yes no 2;3 0.004182 52.693 4 1 1.2873 1.491 21.538 5 Median 1.2964 1.4915 6.954 4 0 Median 1.1295 0.96645 NaN 1 0 Median 140080000 61553000 78526000 135640000 59562000 76078000 4439900 1991800 2448100 13557 2114 13928 35784;35785;35786;35787;35788 55981;55982;55983;55984;55985;55986;55987 55982 7 TVPPVDIVFER RNDHDDDEDEEVISKTVPPVDIVFERDMLT VISKTVPPVDIVFERDMLTQTYDLIERRGT K T V E R D 0 1 0 1 0 0 1 0 0 1 0 0 0 1 2 0 1 0 0 3 0 0 11 0 1270.6921 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 356 366 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0081744 51.276 2 0.83979 0.84656 5.2092 2 Median 0.83979 0.84656 5.2092 2 0 Median NaN NaN NaN 0 0 Median 23567000 12189000 11378000 23567000 12189000 11378000 0 0 0 13558 1699 13929 35789;35790 55988;55989;55990 55990 3 TVQIPVYDFVSHSR NELILKTLKEITEGKTVQIPVYDFVSHSRK KTVQIPVYDFVSHSRKEETVTVYPADVVLF K T V S R K 0 1 0 1 0 1 0 0 1 1 0 0 0 1 1 2 1 0 1 3 0 0 14 0 1646.8417 A0A024R912;Q9BZX2;B4DGD3 A0A024R912 106 119 UCK2 Uridine kinase;Uridine-cytidine kinase 2 yes no 3 0.001289 40.941 1 1 1.7378 1.6421 27.569 2 Median 1.9084 1.9956 NaN 1 0 Median 1.5824 1.3513 NaN 1 0 Median 25383000 9401900 15981000 22603000 8300400 14302000 2780200 1101500 1678700 13559 268 13930 35791;35792 55991;55992;55993;55994 55993 4 TVQLTSSELESTLETLK DAHLLVESKNLDFQKTVQLTSSELESTLET QLTSSELESTLETLKAENQPIRDVLKQLIL K T V L K A 0 0 0 0 0 1 3 0 0 0 4 1 0 0 0 3 4 0 0 1 0 0 17 0 1877.9834 E5KNY5;P42704;B4DSR0 E5KNY5 656 672 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 2.7431E-07 114.7 1 1 0.67889 0.54424 NaN 1 Median NaN NaN NaN 0 0 Median 0.67889 0.54424 NaN 1 0 Median 16446000 11570000 4876900 8128400 8128400 0 8317900 3441100 4876900 13560 1207 13931 35793;35794 55995;55996;55997 55996 3 TVQSLEIDLDSMR AEVGAAETTLTELRRTVQSLEIDLDSMRNL RRTVQSLEIDLDSMRNLKASLENSLREVEA R T V M R N 0 1 0 2 0 1 1 0 0 1 2 0 1 0 0 2 1 0 0 1 0 0 13 0 1505.7396 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__H-INV:HIT000015463 F8VZY9 302 314 KRT18 Keratin, type I cytoskeletal 18 yes no 2 6.7231E-19 138.63 4 3 1.2596 1.4584 52.453 5 Median 1.5867 1.8375 12.012 3 0 Plateau 0.77543 0.64029 5.3295 2 0 Median 547330000 217080000 330250000 527680000 207020000 320670000 19649000 10063000 9586500 13561 316 13932;13933 35795;35796;35797;35798;35799;35800;35801 55998;55999;56000;56001;56002;56003;56004;56005;56006;56007;56008 56002 237 11 TVQSNSPISALAPTGK ENKQFKEEDGLRMRKTVQSNSPISALAPTG VQSNSPISALAPTGKEEGLSTRLLALVVLF K T V G K E 2 0 1 0 0 1 0 1 0 1 1 1 0 0 2 3 2 0 0 1 0 0 16 0 1569.8362 Q53XM7;O95292;B4DNS4;Q6ZSP7;Q6ZR82;B3KVU7 Q53XM7 201 216 VAPB Vesicle-associated membrane protein-associated protein B/C yes no 2 0.00085328 71.241 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4011400 0 4011400 4011400 0 4011400 0 0 0 13562 1423 13934 35802;35803;35804 56009;56010;56011 56011 3 TVQTAVFLYSLYK QGTDTILADEMGLGKTVQTAVFLYSLYKEG GKTVQTAVFLYSLYKEGHSKGPFLVSAPLS K T V Y K E 1 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 2 0 2 2 0 0 13 0 1531.8286 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 751 763 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 2.3097E-14 136.96 2 2 1.2007 1.1424 32.548 4 Median 0.76761 0.85085 3.9664 2 0 Median 1.8778 1.493 0.15994 2 0 Median 148240000 77390000 70854000 114000000 64973000 49028000 34243000 12417000 21826000 13563 515 13935 35805;35806;35807;35808 56012;56013;56014;56015;56016;56017;56018;56019;56020;56021;56022 56013 11 TVSLGAGAK FKVDNDENEHQLSLRTVSLGAGAKDELHIV HQLSLRTVSLGAGAKDELHIVEAEAMNYEG R T V A K D 2 0 0 0 0 0 0 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 9 0 802.45487 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;E5RGW4 A0A0S2Z4G7 46 54 NPM1 Nucleophosmin yes no 2 0.0048508 68.214 1 1.1977 1.3274 NaN 1 Median 1.1977 1.3274 NaN 1 0 Median NaN NaN NaN 0 0 Median 58647000 25995000 32652000 58647000 25995000 32652000 0 0 0 13564 559 13936 35809 56023;56024 56023 2 TVSLGAGAKDELHIVEAEAMNYEGSPIK FKVDNDENEHQLSLRTVSLGAGAKDELHIV IVEAEAMNYEGSPIKVTLATLKMSVQPTVS R T V I K V 4 0 1 1 0 0 4 3 1 2 2 2 1 0 1 2 1 0 1 2 0 0 28 1 2928.4539 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86 A0A0S2Z4G7 46 73 NPM1 Nucleophosmin yes no 3 0.034107 17.012 2 1.0555 0.89821 0.84149 2 Median NaN NaN NaN 0 0 Median 1.0555 0.89821 0.84149 2 0 Median 23241000 12001000 11240000 0 0 0 23241000 12001000 11240000 13565 559 13937 35810;35811 56025;56026 56026 2 TVSLLDENNVSSYLSK SRSQGCSEQVLTVLKTVSLLDENNVSSYLS VSLLDENNVSSYLSKNILAFRDQNILLGTT K T V S K N 0 0 2 1 0 0 1 0 0 0 3 1 0 0 0 4 1 0 1 2 0 0 16 0 1767.8891 P78527 P78527 3303 3318 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 7.5007E-95 220.53 2 2 0.58647 0.54882 41.016 4 Median 0.72644 0.79467 7.7742 2 0 Median 0.48613 0.39243 2.8591 2 0 Median 135030000 84783000 50246000 88938000 52890000 36047000 46091000 31892000 14199000 13566 1665 13938 35812;35813;35814;35815 56027;56028;56029;56030;56031;56032;56033;56034;56035 56030 9 TVSNSVPGRPVSSLGPGQTVSSSGPTIK SGPGRSISGSIPAGRTVSNSVPGRPVSSLG LGPGQTVSSSGPTIKPKCTVVSETISSKNI R T V I K P 0 1 1 0 0 1 0 4 0 1 1 1 0 0 4 7 3 0 0 4 0 0 28 1 2695.4141 B4E223;Q68D10 B4E223 505 532 SPTY2D1 Protein SPT2 homolog yes no 3 0.00082572 26.556 2 1.968 1.6376 5.4201 2 Median NaN NaN NaN 0 0 Median 1.968 1.6376 5.4201 2 0 Median 8474300 2798100 5676300 0 0 0 8474300 2798100 5676300 13567 1071 13939 35816;35817 56036;56037;56038 56036 3 TVSPPIRK TVAASFQSTSVKSPKTVSPPIRKGWSMSEQ TSVKSPKTVSPPIRKGWSMSEQSEESVGGR K T V R K G 0 1 0 0 0 0 0 0 0 1 0 1 0 0 2 1 1 0 0 1 0 0 8 1 896.54435 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 446 453 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.052423 49.358 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8091000 0 8091000 8091000 0 8091000 0 0 0 13568 1010 13940 35818 56039 56039 1 TVSQIISLQTLK TEQFYRKLLNKHGIKTVSQIISLQTLKKEY GIKTVSQIISLQTLKKEYKSYEAKLRLLSS K T V L K K 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 2 2 0 0 1 0 0 12 0 1329.7868 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 125 136 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.1046E-29 172.56 3 2 0.69988 0.70428 16.959 4 Median 0.69084 0.81858 2.9486 2 0 Median 0.7 0.61143 1.6725 2 0 Median 1830900000 1092300000 738600000 1325900000 797640000 528300000 504970000 294670000 210300000 13569 1415 13941 35819;35820;35821;35822;35823 56040;56041;56042;56043;56044;56045;56046;56047;56048;56049;56050;56051;56052;56053;56054;56055;56056;56057;56058;56059 56042 20 TVSQIISLQTLKK TEQFYRKLLNKHGIKTVSQIISLQTLKKEY IKTVSQIISLQTLKKEYKSYEAKLRLLSSF K T V K K E 0 0 0 0 0 2 0 0 0 2 2 2 0 0 0 2 2 0 0 1 0 0 13 1 1457.8817 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 125 137 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 0.002858 39.148 3 0.87333 0.73775 14.497 3 Plateau NaN NaN NaN 0 0 Median 0.87333 0.73775 14.497 3 0 Plateau 20156000 10204000 9951800 0 0 0 20156000 10204000 9951800 13570 1415 13942 35824;35825;35826 56060;56061;56062;56063 56061 4 TVSVGLTLLR VQIGKGPTNNTCVVRTVSVGLTLLRVWDAE TCVVRTVSVGLTLLRVWDAEHPGLSDFMPL R T V L R V 0 1 0 0 0 0 0 1 0 0 3 0 0 0 0 1 2 0 0 2 0 0 10 0 1057.6495 Q8TEM1 Q8TEM1 1448 1457 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0083024 57.96 2 0.72076 0.7171 NaN 1 Median 0.72076 0.7171 NaN 1 0 Median NaN NaN NaN 0 0 Median 17231000 13569000 3661200 17231000 13569000 3661200 0 0 0 13571 1937 13943 35827;35828 56064;56065 56065 2 TVTAAGAENIQQK QATQGNISSDRGKKRTVTAAGAENIQQKTD KRTVTAAGAENIQQKTDEKVDESGPPAPSK R T V Q K T 3 0 1 0 0 2 1 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 13 0 1329.6888 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1240 1252 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.032449 33.057 1 0.80291 0.70343 NaN 1 Median NaN NaN NaN 0 0 Median 0.80291 0.70343 NaN 1 0 Median 1028400 476700 551650 0 0 0 1028400 476700 551650 13572 1270 13944 35829 56066 56066 1 TVTAMDVVYALK VIRDAVTYTEHAKRKTVTAMDVVYALKRQG KRKTVTAMDVVYALKRQGRTLYGFGG____ K T V L K R 2 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 1 3 0 0 12 0 1309.6952 B2R4R0;P62805;Q0VAS5 B2R4R0 81 92 HIST1H4H;HIST1H4A Histone H4 yes no 2 1.4178E-58 183.78 52 41 0.86918 0.8802 28.938 30 Median 0.86918 0.90838 18.235 20 0 Median 0.82194 0.70158 37.103 10 0 Median 38600000000 33405000000 5194700000 29703000000 26520000000 3183000000 8896800000 6885100000 2011700000 13573 828 13945;13946 35830;35831;35832;35833;35834;35835;35836;35837;35838;35839;35840;35841;35842;35843;35844;35845;35846;35847;35848;35849;35850;35851;35852;35853;35854;35855;35856;35857;35858;35859;35860;35861;35862;35863;35864;35865;35866;35867;35868;35869;35870;35871;35872;35873;35874;35875;35876;35877;35878;35879;35880;35881;35882;35883;35884;35885;35886;35887;35888;35889;35890;35891;35892;35893;35894;35895;35896;35897;35898;35899;35900;35901;35902;35903;35904;35905;35906;35907;35908;35909;35910;35911;35912;35913;35914;35915;35916;35917;35918;35919;35920;35921;35922 56067;56068;56069;56070;56071;56072;56073;56074;56075;56076;56077;56078;56079;56080;56081;56082;56083;56084;56085;56086;56087;56088;56089;56090;56091;56092;56093;56094;56095;56096;56097;56098;56099;56100;56101;56102;56103;56104;56105;56106;56107;56108;56109;56110;56111;56112;56113;56114;56115;56116;56117;56118;56119;56120;56121;56122;56123;56124;56125;56126;56127;56128;56129;56130;56131;56132;56133;56134;56135;56136;56137;56138;56139;56140;56141;56142;56143;56144;56145;56146;56147;56148;56149;56150;56151;56152;56153;56154;56155;56156;56157;56158;56159;56160;56161;56162;56163;56164;56165;56166;56167;56168;56169;56170;56171;56172;56173;56174;56175;56176;56177;56178;56179;56180;56181;56182;56183;56184;56185;56186;56187;56188;56189;56190;56191;56192;56193;56194;56195;56196;56197;56198;56199;56200;56201;56202;56203;56204;56205;56206;56207;56208;56209;56210;56211;56212;56213;56214;56215;56216;56217;56218;56219;56220;56221;56222;56223;56224;56225;56226;56227;56228;56229;56230;56231;56232;56233;56234;56235;56236;56237;56238;56239;56240;56241;56242;56243;56244;56245;56246;56247;56248;56249 56126 656 182 TVTAMDVVYALKR VIRDAVTYTEHAKRKTVTAMDVVYALKRQG RKTVTAMDVVYALKRQGRTLYGFGG_____ K T V K R Q 2 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 1 3 0 0 13 1 1465.7963 B2R4R0;P62805;Q0VAS5 B2R4R0 81 93 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 0.00031855 72.006 4 6 0.91895 1.3452 35.786 8 Linear 0.91967 1.0879 4.602 3 0 Median 0.91824 0.78062 35.736 5 0 Median 160720000 85461000 75262000 133440000 71147000 62298000 27278000 14314000 12964000 13574 828 13947;13948 35923;35924;35925;35926;35927;35928;35929;35930;35931;35932 56250;56251;56252;56253;56254;56255;56256;56257;56258;56259;56260 56260 656 11 TVTCLCLSSSGQR LKGGQLLVSLKNHHKTVTCLCLSSSGQRLL HKTVTCLCLSSSGQRLLSGSLDRKVKVYST K T V Q R L 0 1 0 0 2 1 0 1 0 0 2 0 0 0 0 3 2 0 0 1 0 0 13 0 1467.681 Q8TED0;H0Y8P4 Q8TED0 250 262 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.0019329 72.652 2 2 1.1901 1.0857 8.808 3 Median 1.1647 1.1858 NaN 1 0 Median 1.2091 1.039 6.2193 2 0 Median 45505000 20400000 25105000 40267000 17975000 22292000 5237500 2424500 2813000 13575 1936 13949 35933;35934;35935;35936 56261;56262;56263;56264;56265;56266;56267;56268;56269;56270;56271;56272 56264 12 TVTELVTK FDPKFAFKEVEVQAKTVTELVTKKKPKAEG EVEVQAKTVTELVTKKKPKAEGYAEGDLTL K T V T K K 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 3 0 0 2 0 0 8 0 889.51205 Q8IY81;B4DKU3 Q8IY81 226 233 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.025194 55.37 2 0.96678 1.0655 6.3611 2 Median 0.96678 1.0655 6.3611 2 0 Median NaN NaN NaN 0 0 Median 96551000 46706000 49845000 96551000 46706000 49845000 0 0 0 13576 1898 13950 35937;35938 56273;56274 56273 2 TVTLGGDVFDPHGTLSGGAR DNAKKVAFDKRIMTRTVTLGGDVFDPHGTL GDVFDPHGTLSGGARSQAASILTKFQELKD R T V A R S 1 1 0 2 0 0 0 5 1 0 2 0 0 1 1 1 3 0 0 2 0 0 20 0 1955.9701 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 649 668 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 6.9993E-18 104.09 5 4 0.88502 0.98087 25.355 9 Median 0.82827 0.93838 9.3262 5 0 Median 1.7271 1.4607 5.9649 4 0 Median 1255600000 619680000 635970000 979070000 516610000 462460000 276570000 103070000 173500000 13577 69 13951 35939;35940;35941;35942;35943;35944;35945;35946;35947 56275;56276;56277;56278;56279;56280;56281;56282;56283;56284;56285;56286;56287;56288;56289;56290;56291;56292;56293;56294;56295;56296;56297;56298 56280 23 TVTNAVVTVPAYFNDSQR VLTKMKEIAEAYLGKTVTNAVVTVPAYFND NAVVTVPAYFNDSQRQATKDAGTIAGLNVL K T V Q R Q 2 1 2 1 0 1 0 0 0 0 0 0 0 1 1 1 3 0 1 4 0 0 18 0 1980.9905 E9PN89;V9HW22;P11142;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PI65 V9HW22 138 155 HSPA8;HEL-S-72p Heat shock cognate 71 kDa protein no no 2 1.3103E-05 77.644 3 2 1.3864 1.5871 15.368 4 Linear 1.3617 1.5771 1.155 2 0 Median 1.3953 1.2089 0.49315 2 0 Median 506920000 215840000 291080000 403710000 172760000 230950000 103220000 43084000 60131000 13578 1467;1248 13952 35948;35949;35950;35951;35952 56299;56300;56301;56302;56303;56304;56305;56306;56307;56308;56309;56310;56311;56312;56313 56301 15 TVTSATIVYHLAR QRPLSLIQGPPGTGKTVTSATIVYHLARQG GKTVTSATIVYHLARQGNGPVLVCAPSNIA K T V A R Q 2 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 3 0 1 2 0 0 13 0 1430.7882 A0A024R7L5;A0A024R7L8;Q92900;A0A059XBJ1;A0A059XAL2;A0A059XAJ5;A0A059XG67;A0A059X4U2 A0A024R7L5 499 511 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.050423 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13579 231 13953 35953 56314 56314 1 TVTSILYPLLR KISDWALKLSSLDRRTVTSILYPLLRLRQA LDRRTVTSILYPLLRLRQACCHPQAVRGEF R T V L R L 0 1 0 0 0 0 0 0 0 1 3 0 0 0 1 1 2 0 1 1 0 0 11 0 1274.7598 A0A0D9SFM0;Q149N8;B3KX98 A0A0D9SFM0 966 976 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 0.0012773 68.735 1 2 1.6514 1.433 NaN 1 Median NaN NaN NaN 0 0 Median 1.6514 1.433 NaN 1 0 Median 6731900 1061600 5670300 3164000 0 3164000 3567900 1061600 2506300 13580 527 13954 35954;35955;35956 56315;56316;56317 56316 3 TVVEALFQR EESVFAVTAVNASEKTVVEALFQRDSLVRQ VNASEKTVVEALFQRDSLVRQSQLVVDWLE K T V Q R D 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 9 0 1061.5869 P57740 P57740 251 259 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.013346 56.659 1 1.6422 1.7011 NaN 1 Median 1.6422 1.7011 NaN 1 0 Median NaN NaN NaN 0 0 Median 23006000 6926100 16080000 23006000 6926100 16080000 0 0 0 13581 1621 13955 35957 56318 56318 1 TVVPCDFGLSTEEILAADDK YEDIIDDLPCRFKYRTVVPCDFGLSTEEIL DFGLSTEEILAADDKELNRWCSLKKTCMYR R T V D K E 2 0 0 3 1 0 2 1 0 1 2 1 0 1 1 1 2 0 0 2 0 0 20 0 2179.0355 Q8N9T8;A0A024R7C4;B4DUT2 Q8N9T8 527 546 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 1.3974E-06 75.764 2 2 0.92355 0.85215 23.732 4 Median 0.66111 0.68541 8.1328 2 0 Median 1.2897 1.0241 3.3347 2 0 Median 74160000 38306000 35854000 48322000 27275000 21047000 25838000 11031000 14807000 13582 1916 13956 35958;35959;35960;35961 56319;56320;56321;56322;56323;56324;56325 56322 7 TVVSGLVQFVPK SLYVEKIDVGEAEPRTVVSGLVQFVPKEEL EPRTVVSGLVQFVPKEELQDRLVVVLCNLK R T V P K E 0 0 0 0 0 1 0 1 0 0 1 1 0 1 1 1 1 0 0 4 0 0 12 0 1272.7442 A0A0S2Z4R1;P54577 A0A0S2Z4R1 401 412 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes no 2 0.00020601 79.974 1 2 2.5205 2.0282 45.354 3 Median 4.1805 4.2599 NaN 1 0 Median 2.4161 1.948 5.7051 2 0 Median 22317000 4577800 17739000 17036000 3268500 13768000 5280400 1309300 3971100 13583 567 13957 35962;35963;35964 56326;56327;56328;56329;56330 56326 5 TVWIAR KGELERAFSYYGPLRTVWIARNPPGFAFVE AFSYYGPLRTVWIARNPPGFAFVEFEDPRD R T V A R N 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 6 0 744.42826 Q16629;A0A0B4J1Z1;B4DEK2;C9JAB2;Q8NB80 Q16629 39 44 SRSF7 Serine/arginine-rich splicing factor 7 no no 2 0.044593 92.279 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13584 1772;1918 13958 35965 56331 56331 1 TVYDADMDLTASEVSK CMNQIEDNDDFQLQKTVYDADMDLTASEVS VYDADMDLTASEVSKIVTVSTGIKKKSNKK K T V S K I 2 0 0 3 0 0 1 0 0 0 1 1 1 0 0 2 2 0 1 2 0 0 16 0 1743.7873 Q562F6;B7Z7S9 Q562F6 359 374 SGOL2 Shugoshin-like 2 yes no 2 1.2485E-06 90.731 2 1.0992 1.1044 NaN 1 Median 1.0992 1.1044 NaN 1 0 Median NaN NaN NaN 0 0 Median 10451000 2639800 7811200 10451000 2639800 7811200 0 0 0 13585 1795 13959 35966;35967 56332;56333 56333 1660 2 TVYNLNDK DVYLTVKLLLPGVIKTVYNLNDKQIVKLFS LLPGVIKTVYNLNDKQIVKLFSRIFNCNPD K T V D K Q 0 0 2 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 8 0 965.48181 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 317 324 LIG3 DNA ligase 3;DNA ligase yes no 2 0.018936 68.224 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13586 1589 13960 35968 56334 56334 1 TVYVELLPK RKKPLGERPKDEDERTVYVELLPKNVNHSW KDEDERTVYVELLPKNVNHSWIERVFGKCG R T V P K N 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 0 1 0 1 2 0 0 9 0 1060.6168 Q4G0J3;D6RFF0 Q4G0J3 126 134 LARP7 La-related protein 7 yes no 2 0.0366 51.346 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5372500 5372500 0 5372500 5372500 0 0 0 0 13587 1779 13961 35969;35970 56335;56336;56337 56337 3 TWKPTLVILR CGTDRNAYVWTLKGRTWKPTLVILRINRAA TLKGRTWKPTLVILRINRAARCVRWAPNEN R T W L R I 0 1 0 0 0 0 0 0 0 1 2 1 0 0 1 0 2 1 0 1 0 0 10 1 1225.7547 A4D275;O15143;C9JBJ7;C9K057;C9J4Z7;F8VXW2;C9JEY1;C9JQM8;C9JFG9;C9J6C8 A4D275 85 94 ARPC1B Actin-related protein 2/3 complex subunit 1B yes no 3 0.028656 34.692 1 1.8178 2.0105 NaN 1 Median 1.8178 2.0105 NaN 1 0 Median NaN NaN NaN 0 0 Median 7366800 2329000 5037800 7366800 2329000 5037800 0 0 0 13588 670 13962 35971 56338;56339 56339 2 TWNLVEGR SGKLALSVGTDKTLRTWNLVEGRSAFIKNI GTDKTLRTWNLVEGRSAFIKNIKQNAHIVE R T W G R S 0 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 8 0 973.49813 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 149 156 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 0.0034835 95.909 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13589 580 13963 35972;35973 56340;56341 56341 2 TWTQTYK ILNSTTIEISELPVRTWTQTYKEQVLEPML EISELPVRTWTQTYKEQVLEPMLNGTEKTP R T W Y K E 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 3 1 1 0 0 0 7 0 926.44978 P11388 P11388 930 936 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.010632 110.61 1 2 1.3073 1.1193 23.133 3 Median 0.64267 0.75112 NaN 1 0 Median 1.318 1.1213 0.24613 2 0 Median 423700000 227110000 196600000 285100000 168030000 117070000 138600000 59072000 79529000 13590 1471 13964 35974;35975;35976 56342;56343;56344;56345 56343 4 TWTVVDAK RIAAYKSILQERVKKTWTVVDAKTLKKEDI LQERVKKTWTVVDAKTLKKEDIQKETVYCL K T W A K T 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 2 0 0 8 0 918.48108 P13010;Q53T09 P13010 275 282 XRCC5 X-ray repair cross-complementing protein 5 yes no 1;2 0.0085084 86.095 2 3 0.29805 0.27753 19.841 4 Median 0.29362 0.33251 8.0477 2 0 Median 0.29805 0.2386 3.8586 2 0 Median 329100000 254600000 74499000 301680000 233200000 68482000 27425000 21407000 6017100 13591 1476 13965 35977;35978;35979;35980;35981 56346;56347;56348;56349;56350;56351;56352;56353 56349 8 TWYPVSIPAFYNPVTSLLKPVGEK SFEDKLLMSDIVFMRTWYPVSIPAFYNPVT FYNPVTSLLKPVGEKDTWSGMRTTGQLRLA R T W E K D 1 0 1 0 0 0 1 1 0 1 2 2 0 1 4 2 2 1 2 3 0 0 24 1 2705.4469 Q14692 Q14692 1100 1123 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 8.9675E-06 41.763 2 0.59231 0.6934 19.626 2 Median 0.59231 0.6934 19.626 2 0 Median NaN NaN NaN 0 0 Median 60764000 34906000 25858000 60764000 34906000 25858000 0 0 0 13592 1742 13966 35982;35983 56354;56355 56355 2 TYADYESVNECMEGVCK HTILLVQPTKRPEGRTYADYESVNECMEGV ADYESVNECMEGVCKMYEEHLKRMNPNSPS R T Y C K M 1 0 1 1 2 0 3 1 0 0 0 1 1 0 0 1 1 0 2 2 0 0 17 0 2053.8067 A0A024R6D4;P84090;G3V279 A0A024R6D4 18 34 ERH Enhancer of rudimentary homolog yes no 2 1.353E-25 144.57 2 1.0571 1.1275 5.3681 2 Median 1.0571 1.1275 5.3681 2 0 Median NaN NaN NaN 0 0 Median 79141000 37948000 41194000 79141000 37948000 41194000 0 0 0 13593 201 13967 35984;35985 56356;56357;56358;56359;56360;56361 56361 160 6 TYAICGAIR AEVDKVTGRFNGQFKTYAICGAIRRMGESD FNGQFKTYAICGAIRRMGESDDSILRLAKA K T Y I R R 2 1 0 0 1 0 0 1 0 2 0 0 0 0 0 0 1 0 1 0 0 0 9 0 1023.5172 Q8WVC2;Q6FGH5;P63220;Q9BYK1 Q8WVC2 52 60 RPS21 40S ribosomal protein S21 yes no 2 0.0021719 75.854 2 1.3134 1.4932 12.257 2 Median 1.3134 1.4932 12.257 2 0 Median NaN NaN NaN 0 0 Median 138230000 58027000 80201000 138230000 58027000 80201000 0 0 0 13594 1655 13968 35986;35987 56362;56363;56364 56362 3 TYDPSGDSTLPTCSK ALAKTEKYEHKSEVKTYDPSGDSTLPTCSK TYDPSGDSTLPTCSKKRKIEQVDKEDEITE K T Y S K K 0 0 0 2 1 0 0 1 0 0 1 1 0 0 2 3 3 0 1 0 0 0 15 0 1627.7036 Q9Y2X3;B3KN82 Q9Y2X3 427 441 NOP58 Nucleolar protein 58 yes no 2 9.9467E-39 171.32 2 2 0.86212 0.83498 4.4045 4 Median 0.71847 0.80831 6.6257 2 0 Median 0.99997 0.83498 1.9383 2 0 Median 289630000 150920000 138710000 193480000 105110000 88372000 96148000 45812000 50335000 13595 2129 13969 35988;35989;35990;35991 56365;56366;56367;56368;56369;56370;56371;56372;56373;56374;56375;56376 56368 12 TYELLNCDK VVLEGASLETVKVGKTYELLNCDKHKSILL TVKVGKTYELLNCDKHKSILLKNGRDPGEA K T Y D K H 0 0 1 1 1 0 1 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 9 0 1154.5278 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65;A0A087WVM7;A0A0U3B3H7 A8K6D2 60 68 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 0.013268 56.729 1 1.3451 1.0923 NaN 1 Median NaN NaN NaN 0 0 Median 1.3451 1.0923 NaN 1 0 Median 4443400 1854000 2589400 0 0 0 4443400 1854000 2589400 13596 759 13970 35992 56377 56377 1 TYEVSLR TICFVYQDPQGRHVKTYEVSLREKEFNKGP DPQGRHVKTYEVSLREKEFNKGPWKQENVE K T Y L R E 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 7 0 866.44978 Q16531;F5GY55;B7Z2A1;F5H2L3 Q16531 192 198 DDB1 DNA damage-binding protein 1 yes no 2 0.030326 68.915 2 2 0.98463 0.94943 2.2619 4 Median 0.82557 0.94313 2.9595 2 0 Median 1.1666 0.95195 2.3926 2 0 Median 301100000 165740000 135370000 275140000 153930000 121220000 25961000 11813000 14148000 13597 1770 13971 35993;35994;35995;35996 56378;56379;56380;56381;56382 56380 5 TYFEDNPR LKEIKEELLHSEKLKTYFEDNPRDLQLLRH LHSEKLKTYFEDNPRDLQLLRHDLPLHPAV K T Y P R D 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 8 0 1040.4563 Q9NY93;Q53HB9;H7BZN7 Q9NY93 462 469 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.013109 66.073 2 0.93167 0.98037 6.423 2 Median 0.93167 0.98037 6.423 2 0 Median NaN NaN NaN 0 0 Median 47761000 24838000 22923000 47761000 24838000 22923000 0 0 0 13598 2081 13972 35997;35998 56383;56384 56383 2 TYFGPYDETTCIDWTDDSR APGKKREFNAFVLDKTYFGPYDETTCIDWT PYDETTCIDWTDDSRCFVVGSKDMSTWVFG K T Y S R C 0 1 0 4 1 0 1 1 0 1 0 0 0 1 1 1 4 1 2 0 0 0 19 0 2340.9481 Q15269;A0A0B4J2E5 Q15269 139 157 PWP2 Periodic tryptophan protein 2 homolog yes no 2 1.5663E-06 76.588 2 1 0.93689 0.8698 21.019 2 Median 0.74853 0.74968 NaN 1 0 Median 1.1726 1.0092 NaN 1 0 Median 24826000 16538000 8288100 17329000 13333000 3995100 7497600 3204700 4293000 13599 1756 13973 35999;36000;36001 56385;56386;56387;56388;56389;56390;56391;56392 56389 8 TYGEPESAGPSR GYNDDYYEESYFTTRTYGEPESAGPSRAVR TTRTYGEPESAGPSRAVRQSVTSFPDADAF R T Y S R A 1 1 0 0 0 0 2 2 0 0 0 0 0 0 2 2 1 0 1 0 0 0 12 0 1249.5575 P50402;Q5HY57 P50402 104 115 EMD Emerin yes no 2 1.7773E-05 104.43 2 2 0.70466 0.67925 18.401 4 Median 0.69966 0.78921 1.9724 2 0 Median 0.70763 0.57573 4.1364 2 0 Median 213530000 121690000 91838000 189850000 107880000 81965000 23677000 13805000 9872300 13600 1590 13974 36002;36003;36004;36005 56393;56394;56395;56396;56397;56398;56399 56395 7 TYGGCEGPDAMYVK ______________________________ KTYGGCEGPDAMYVKLISSDGHEFIVKREH K T Y V K L 1 0 0 1 1 0 1 3 0 0 0 1 1 0 1 0 1 0 2 1 0 0 14 0 1546.6432 E5RHG8;A0A024R7Y5;Q15369;R4GMY8 E5RHG8 7 20 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2 0.0045144 51.727 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13601 238 13975 36006 56400 56400 178 1 TYLPSQVSR LIRTGRLPEAAFLARTYLPSQVSRVVKLWR AAFLARTYLPSQVSRVVKLWRENLSKVNQK R T Y S R V 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 2 1 0 1 1 0 0 9 0 1049.5506 P35606 P35606 760 768 COPB2 Coatomer subunit beta yes yes 2 0.034216 51.066 2 1.4093 1.433 NaN 1 Median 1.4093 1.433 NaN 1 0 Median NaN NaN NaN 0 0 Median 40080000 7510200 32570000 40080000 7510200 32570000 0 0 0 13602 1545 13976 36007;36008 56401;56402 56401 2 TYLTITDTQLVNSLLEK GDTPAPRRAVLETIRTYLTITDTQLVNSLL LTITDTQLVNSLLEKASEKVLDPASSDFTR R T Y E K A 0 0 1 1 0 1 1 0 0 1 4 1 0 0 0 1 4 0 1 1 0 0 17 0 1951.0514 B3KMR5;Q5JTH9;B3KY97 B3KMR5 719 735 RRP12 RRP12-like protein yes no 2 3.1692E-45 170.18 2 2 1.0658 1.021 40.195 4 Median 1.2739 1.4041 3.4389 2 0 Median 0.84239 0.70613 10.53 2 0 Median 246760000 114660000 132110000 143090000 60538000 82554000 103670000 54118000 49555000 13603 907 13977 36009;36010;36011;36012 56403;56404;56405;56406;56407;56408;56409 56404 7 TYNASITLQQQLK HLQDLMEGLTAKVFRTYNASITLQQQLKEL FRTYNASITLQQQLKELTAPDENIPAKILS R T Y L K E 1 0 1 0 0 3 0 0 0 1 2 1 0 0 0 1 2 0 1 0 0 0 13 0 1506.8042 P11387;Q9BVT2 P11387 591 603 TOP1 DNA topoisomerase 1 yes no 2 6.862E-89 230.61 2 2 1.2748 1.2999 1.7888 4 Median 1.0844 1.2809 0.97485 2 0 Median 1.5138 1.3176 0.79713 2 0 Median 1401400000 637280000 764140000 981170000 466050000 515120000 420250000 171240000 249020000 13604 1470 13978 36013;36014;36015;36016 56410;56411;56412;56413;56414;56415;56416;56417;56418;56419;56420;56421;56422;56423;56424;56425;56426;56427;56428;56429;56430 56427 21 TYNEPGSQVFK HAMAKDIDLLAKNAKTYNEPGSQVFKDANS KNAKTYNEPGSQVFKDANSIKKIFYMKKAE K T Y F K D 0 0 1 0 0 1 1 1 0 0 0 1 0 1 1 1 1 0 1 1 0 0 11 0 1268.6037 Q86U86;E7EVG2;H0Y5B5 Q86U86 261 271 PBRM1 Protein polybromo-1 yes no 2 0.00041899 79.986 1 1.1645 1.1742 NaN 1 Median 1.1645 1.1742 NaN 1 0 Median NaN NaN NaN 0 0 Median 28104000 17509000 10595000 28104000 17509000 10595000 0 0 0 13605 1883 13979 36017 56431 56431 1 TYPVQEYFLEDCIQMTHFVPPPK CEYFFNCPIIEVYGRTYPVQEYFLEDCIQM LEDCIQMTHFVPPPKDKKKKDKDDDGGEDD R T Y P K D 0 0 0 1 1 2 2 0 1 1 1 1 1 2 4 0 2 0 2 2 0 0 23 0 2838.3397 Q08211;Q58F26;Q6PJK6 Q08211 567 589 DHX9 ATP-dependent RNA helicase A yes no 3 1.1968E-06 48.315 1 1.6369 1.6464 NaN 1 Median 1.6369 1.6464 NaN 1 0 Median NaN NaN NaN 0 0 Median 27062000 7764200 19298000 27062000 7764200 19298000 0 0 0 13606 1691 13980 36018 56432 56432 1521 1 TYQELLVNQNPIAQPLASR PDGPEAQAEACSGERTYQELLVNQNPIAQP LLVNQNPIAQPLASRRLTRKLYKCIKKAVK R T Y S R R 2 1 2 0 0 3 1 0 0 1 3 0 0 0 2 1 1 0 1 1 0 0 19 0 2154.1433 Q9NX24;D6RC52;D6RCB9;J3QSY4 Q9NX24 23 41 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 2 1.2909E-39 154.65 3 2 0.71532 0.70321 22.407 4 Median 0.76791 0.867 7.7968 2 0 Median 0.68742 0.59319 2.2468 2 0 Median 203090000 114440000 88651000 138860000 77865000 60991000 64237000 36577000 27660000 13607 2077 13981 36019;36020;36021;36022;36023 56433;56434;56435;56436;56437;56438;56439;56440;56441;56442;56443;56444 56439 12 TYSLGSALRPSTSR SRPSSSRSYVTTSTRTYSLGSALRPSTSRS RTYSLGSALRPSTSRSLYASSPGGVYATRS R T Y S R S 1 2 0 0 0 0 0 1 0 0 2 0 0 0 1 4 2 0 1 0 0 0 14 1 1494.7791 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;A0A1B0GUA0;A0A1B0GTT5;A0A1B0GVG8 V9HWE1 37 50 HEL113;VIM Vimentin yes no 2;3 0.00076857 52.071 3 1.0742 1.1842 6.2303 3 Median 1.0742 1.1842 6.2303 3 0 Median NaN NaN NaN 0 0 Median 591810000 282290000 309520000 591810000 282290000 309520000 0 0 0 13608 1457 13982 36024;36025;36026 56445;56446;56447;56448;56449 56446 5 TYSLSSSFSSSSSTR GDPKHSSQTSNLAHKTYSLSSSFSSSSSTR TYSLSSSFSSSSSTRKRGPSEETGGAVFDH K T Y T R K 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 9 2 0 1 0 0 0 15 0 1582.7111 A8K4M5;O60563 A8K4M5 558 572 CCNT1 Cyclin-T1 yes no 2 0.0018483 46.592 1 0.42031 0.44524 NaN 1 Median 0.42031 0.44524 NaN 1 0 Median NaN NaN NaN 0 0 Median 3875300 2778000 1097200 3875300 2778000 1097200 0 0 0 13609 737 13983 36027 56450 56450 1 TYSVPAHQER CPVNTEPSGPTCEKKTYSVPAHQERAYEYV TCEKKTYSVPAHQERAYEYVECPIRGTAAE K T Y E R A 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 1 1 0 1 1 0 0 10 0 1186.5731 A0A024RBY9;P53701;Q68D50 A0A024RBY9 50 59 HCCS;DKFZp779I1858 Cytochrome c-type heme lyase yes no 3 0.0099412 33.89 1 0.71799 0.71895 NaN 1 Median 0.71799 0.71895 NaN 1 0 Median NaN NaN NaN 0 0 Median 6839900 4327100 2512800 6839900 4327100 2512800 0 0 0 13610 350 13984 36028 56451 56451 1 TYSVVPMTSR LAQDSACSQRALQLRTYSVVPMTSRLGLIE ALQLRTYSVVPMTSRLGLIEWLENTVTLKD R T Y S R L 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 2 2 0 1 2 0 0 10 0 1139.5645 P78527 P78527 3790 3799 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00022776 71.692 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6227300 6227300 0 6227300 6227300 0 0 0 0 13611 1665 13985 36029;36030 56452;56453 56452 1464 2 TYSYLTPDLWK TLGNFAKATFDAISKTYSYLTPDLWKETVF AISKTYSYLTPDLWKETVFTKSPYQEFTDH K T Y W K E 0 0 0 1 0 0 0 0 0 0 2 1 0 0 1 1 2 1 2 0 0 0 11 0 1385.6867 P15880;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;Q8J014;E9PQD7;Q9BSW5;O60249;A4D0Y7;Q8NI62 P15880 247 257 RPS2;rps2;LOC392781;OK/KNS-cl.6 40S ribosomal protein S2 no no 2 5.4615E-10 129.38 2 2 0.87803 0.85264 19.978 4 Median 0.89492 1.0144 1.6768 2 0 Median 0.85521 0.71816 1.3861 2 0 Median 388240000 206580000 181670000 290300000 152920000 137370000 97949000 53658000 44292000 13612 1485;1930 13986 36031;36032;36033;36034 56454;56455;56456;56457;56458;56459;56460;56461 56455 8 TYTAYVDLEK SEFVILRDEKWGGNKTYTAYVDLEKDFAAE WGGNKTYTAYVDLEKDFAAEVVHPGDLKNS K T Y E K D 1 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 2 0 2 1 0 0 10 0 1201.5867 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 288 297 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.024948 53.327 1 1 1.9719 1.6885 NaN 1 Median NaN NaN NaN 0 0 Median 1.9719 1.6885 NaN 1 0 Median 4575100 3790200 784860 3161700 3161700 0 1413300 628470 784860 13613 567 13987 36035;36036 56462;56463 56462 2 TYTDELTPIESAVSVFK YNLLSLRFNSRIRVKTYTDELTPIESAVSV TDELTPIESAVSVFKAANWYEREIWDMFGV K T Y F K A 1 0 0 1 0 0 2 0 0 1 1 1 0 1 1 2 3 0 1 2 0 0 17 0 1898.9513 Q9UF24;O75489;Q53FM7 Q9UF24 71 87 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 2 0.018738 35.204 1 1.3986 1.3976 NaN 1 Median 1.3986 1.3976 NaN 1 0 Median NaN NaN NaN 0 0 Median 5638300 2138700 3499600 5638300 2138700 3499600 0 0 0 13614 1406 13988 36037 56464 56464 1 TYTQLVR TPEKWDIITRKGGERTYTQLVRLIILDEIH ITRKGGERTYTQLVRLIILDEIHLLHDDRG R T Y V R L 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 2 0 1 1 0 0 7 0 879.48142 O75643;A4FU77;Q9H8B9 O75643 604 610 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0098984 113.08 2 0.96285 1.0447 0.17768 2 Median 0.96285 1.0447 0.17768 2 0 Median NaN NaN NaN 0 0 Median 85101000 43175000 41925000 85101000 43175000 41925000 0 0 0 13615 1411 13989 36038;36039 56465;56466;56467;56468 56466 4 TYYYNTETK GAKSMWTEHKSPDGRTYYYNTETKQSTWEK KSPDGRTYYYNTETKQSTWEKPDDLKTPAE R T Y T K Q 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 3 0 3 0 0 0 9 0 1181.5241 O75400;H0YG38;Q05C41;F5H578 O75400 156 164 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.001341 86.67 1 1.6579 1.6933 NaN 1 Median 1.6579 1.6933 NaN 1 0 Median NaN NaN NaN 0 0 Median 10468000 3973100 6494700 10468000 3973100 6494700 0 0 0 13616 1404 13990 36040 56469 56469 1 VAADLQLSTPQK QPVDQPTTESCSTLKVAADLQLSTPQKASQ TLKVAADLQLSTPQKASQHQVLFLLSDVAH K V A Q K A 2 0 0 1 0 2 0 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 12 0 1269.6929 A7E234;Q9H582;Q569I6;Q9H835 A7E234 157 168 ZNF644 Zinc finger protein 644 yes no 2 0.0013581 61.344 1 1.5529 1.3369 NaN 1 Median NaN NaN NaN 0 0 Median 1.5529 1.3369 NaN 1 0 Median 1108200 469710 638460 0 0 0 1108200 469710 638460 13617 693 13991 36041 56470 56470 1 VAAGLQIK LSRVLANPGNSQVARVAAGLQIKNSLTSKD GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ R V A I K N 2 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 798.49634 B2RBR9;Q14974;J3QR48 B2RBR9 55 62 KPNB1 Importin subunit beta-1 yes no 2 0.01377 64.547 2 2.2582 2.3165 1.0187 2 Median 2.2582 2.3165 1.0187 2 0 Median NaN NaN NaN 0 0 Median 59504000 17374000 42130000 59504000 17374000 42130000 0 0 0 13618 880 13992 36042;36043 56471;56472;56473 56471 3 VAAGTLDASTK SEILKQKDTEPTNFKVAAGTLDASTKIYAV TNFKVAAGTLDASTKIYAVRVDAVHADVYR K V A T K I 3 0 0 1 0 0 0 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1032.5451 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 153 163 NCAPH Condensin complex subunit 2 yes no 2 0.0048085 57.348 1 1.6728 1.3199 NaN 1 Median NaN NaN NaN 0 0 Median 1.6728 1.3199 NaN 1 0 Median 4084200 1566800 2517400 0 0 0 4084200 1566800 2517400 13619 740 13993 36044 56474;56475 56475 2 VAAGVLCELAQDK LFVQLLYSSVENIQRVAAGVLCELAQDKEA QRVAAGVLCELAQDKEAADAIDAEGASAPL R V A D K E 3 0 0 1 1 1 1 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 13 0 1372.7021 A0A0S2Z487;A0A024R1X8;P14923;A0A0S2Z495;B4DSW9;B4DL06;B4DGU4;B5BU28;A0A024R2Q3;P35222 A0A0S2Z487 603 615 JUP;CTNNB1 Junction plakoglobin;Catenin beta-1 yes no 2 0.0033495 65.5 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7076000 7076000 0 6222700 6222700 0 853350 853350 0 13620 94 13994 36045;36046 56476;56477 56476 2 VAALTFEANVLAELEK VSSLTGENVREFFFRVAALTFEANVLAELE AALTFEANVLAELEKSGARRIGDVVRINSD R V A E K S 4 0 1 0 0 0 3 0 0 0 3 1 0 1 0 0 1 0 0 2 0 0 16 0 1716.9298 C9JY26;Q6NXT3;A0A024QZ68;Q9BZG1;B4DNC0;J3QLC6 C9JY26 212 227 RAB34 Ras-related protein Rab-34 yes no 2 5.1075E-09 102.62 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3287100 0 3287100 3287100 0 3287100 0 0 0 13621 13 13995 36047 56478 56478 1 VAAPDVVVPTLDTVR PWQAKVPQIEVETHKVAAPDVVVPTLDTVR VAAPDVVVPTLDTVRHEALLYTWLAEHKPL K V A V R H 2 1 0 2 0 0 0 0 0 0 1 0 0 0 2 0 2 0 0 5 0 0 15 0 1550.8668 Q14204 Q14204 2562 2576 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0023181 53.569 1 2 3.3737 3.352 78.855 3 Plateau 3.3742 3.3537 NaN 1 0 Median 1.0042 0.85594 1.8378 2 0 Median 22010000 6589200 15421000 16226000 3601700 12625000 5783500 2987500 2796000 13622 1729 13996 36048;36049;36050 56479;56480;56481;56482;56483 56480 5 VAAPEIVSGVSGESEQK LAHAIAGELDLPILKVAAPEIVSGVSGESE APEIVSGVSGESEQKLRELFEQAVSNAPCI K V A Q K L 2 0 0 0 0 1 3 2 0 1 0 1 0 0 1 3 0 0 0 3 0 0 17 0 1685.8472 B4DLM8;O15381;B4DQJ4 B4DLM8 329 345 NVL Nuclear valosin-containing protein-like yes no 2 7.7297E-05 79.633 2 1 1.8713 1.8876 20.201 3 Plateau 1.8004 1.8876 22.265 2 0 Median 1.8713 1.516 NaN 1 0 Median 37396000 15050000 22346000 35482000 14506000 20976000 1914200 543510 1370600 13623 997 13997 36051;36052;36053 56484;56485;56486 56484 3 VAAQCSHAAVSAYK MILVVRNDLKMGKGKVAAQCSHAAVSAYKQ KVAAQCSHAAVSAYKQIQRRNPETLKQWEY K V A Y K Q 5 0 0 0 1 1 0 0 1 0 0 1 0 0 0 2 0 0 1 2 0 0 14 0 1461.7034 Q96ME4;J3KQ48;Q9Y3E5 Q96ME4 82 95 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 2;3 1.4894E-14 133.15 3 0.40332 0.41551 8.6832 2 Median 0.40332 0.41551 8.6832 2 0 Median NaN NaN NaN 0 0 Median 25426000 18455000 6971000 25426000 18455000 6971000 0 0 0 13624 1329 13998 36054;36055;36056 56487;56488;56489;56490 56489 3 VAASEEQEFAEGFVK LVTTTPTSSQFLYPKVAASEEQEFAEGFVK VAASEEQEFAEGFVKALEDLHKQNQLGAGA K V A V K A 3 0 0 0 0 1 4 1 0 0 0 1 0 2 0 1 0 0 0 2 0 0 15 0 1639.773 P17535 P17535 128 142 JUND Transcription factor jun-D yes yes 2 3.8321E-10 115.33 2 3 0.5949 0.62376 9.5927 3 Median 0.5841 0.60531 4.2454 2 0 Median 0.9105 0.70878 NaN 1 0 Median 39073000 23481000 15593000 33892000 21802000 12090000 5181700 1678700 3503000 13625 1492 13999 36057;36058;36059;36060;36061 56491;56492;56493;56494;56495;56496;56497;56498;56499 56496 9 VAASTFSSDSK MKTKELIGSMKINGRVAASTFSSDSKKVYA INGRVAASTFSSDSKKVYASSGDGEVYVWD R V A S K K 2 0 0 1 0 0 0 0 0 0 0 1 0 1 0 4 1 0 0 1 0 0 11 0 1098.5193 B2RAX6;Q9Y5J1;J3KSR7;J3QR85 B2RAX6 361 371 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 7.8316E-06 109.66 1 1 1.0324 0.96135 9.201 2 Median 0.81899 0.9008 NaN 1 0 Median 1.3015 1.026 NaN 1 0 Median 60164000 31152000 29012000 54607000 28898000 25709000 5557100 2254000 3303000 13626 876 14000 36062;36063 56500;56501;56502;56503 56500 4 VAASTFSSDSKK MKTKELIGSMKINGRVAASTFSSDSKKVYA NGRVAASTFSSDSKKVYASSGDGEVYVWDV R V A K K V 2 0 0 1 0 0 0 0 0 0 0 2 0 1 0 4 1 0 0 1 0 0 12 1 1226.6143 B2RAX6;Q9Y5J1;J3KSR7;J3QR85 B2RAX6 361 372 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 0.022965 50.292 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1331700 0 1331700 0 0 0 1331700 0 1331700 13627 876 14001 36064 56504 56504 1 VAATSVITIVK RGPLAAGLGPLVPGKVAATSVITIVKSKTD VPGKVAATSVITIVKSKTDARS________ K V A V K S 2 0 0 0 0 0 0 0 0 2 0 1 0 0 0 1 2 0 0 3 0 0 11 0 1100.6805 A0A024R8X1;O15525 A0A024R8X1 145 155 hCG_1991559;MAFG Transcription factor MafG yes no 2 5.7947E-10 128.86 2 2 1.6026 1.4983 7.0623 4 Median 1.4642 1.6021 2.05 2 0 Median 1.7558 1.4201 0.15073 2 0 Median 104190000 44036000 60156000 89844000 38593000 51250000 14349000 5442900 8906000 13628 262 14002 36065;36066;36067;36068 56505;56506;56507;56508;56509;56510;56511;56512 56506 8 VACCPLER KPAVTQLLWERATEKVACCPLERCSSVMLL WERATEKVACCPLERCSSVMLLGMMARGKP K V A E R C 1 1 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 8 0 1003.4579 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 764 771 NCAPD2 Condensin complex subunit 1 yes no 2 0.0058079 89.296 2 2 1.0357 1.0094 19.024 4 Median 0.76397 0.8608 5.5536 2 0 Median 1.4381 1.1851 5.7215 2 0 Median 208350000 113180000 95175000 177330000 100260000 77077000 31020000 12922000 18098000 13629 908 14003 36069;36070;36071;36072 56513;56514;56515;56516;56517;56518;56519;56520 56514 8 VACIGAWHPAR HTKKLPRKTHRGLRKVACIGAWHPARVAFS GLRKVACIGAWHPARVAFSVARAGQKGYHH K V A A R V 3 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 1 0 0 11 0 1236.6186 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;B5MCW2;B2R7Y3;Q92901 P39023 251 261 RPL3;rpl3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 2;3 6.1746E-06 110.31 6 4 0.91199 0.85489 12.068 8 Median 0.7525 0.8789 15.274 4 0 Median 0.96016 0.80059 7.7122 4 0 Median 1002100000 557780000 444360000 886080000 499430000 386660000 116050000 58349000 57703000 13630 1554 14004 36073;36074;36075;36076;36077;36078;36079;36080;36081;36082 56521;56522;56523;56524;56525;56526;56527;56528;56529;56530;56531;56532;56533;56534;56535;56536 56530 16 VADEMDVMLGQEVGYSIR CTQPRRVAAMSVAQRVADEMDVMLGQEVGY EMDVMLGQEVGYSIRFEDCSSAKTILKYMT R V A I R F 1 1 0 2 0 1 2 2 0 1 1 0 2 0 0 1 0 0 1 3 0 0 18 0 2010.9391 O43143;B4E0S6 O43143 205 222 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 3.7085E-14 104.41 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28781000 7166500 21614000 28781000 7166500 21614000 0 0 0 13631 1379 14005 36083;36084;36085 56537;56538;56539;56540;56541 56537 1049;1050 5 VADGLPLAASMQEDEQSGR ______________________________ LPLAASMQEDEQSGRDLQQYQSQAKQLFRK R V A G R D 3 1 0 2 0 2 2 2 0 0 2 0 1 0 1 2 0 0 0 1 0 0 19 0 1972.916 O75396 O75396 10 28 SEC22B Vesicle-trafficking protein SEC22b yes yes 2 0.0001387 44.457 1 3.2023 3.3273 NaN 1 Median 3.2023 3.3273 NaN 1 0 Median NaN NaN NaN 0 0 Median 13563000 4728700 8834400 13563000 4728700 8834400 0 0 0 13632 1403 14006 36086 56542 56542 1082 1 VADIGLAAWGR ______________________________ LPYKVADIGLAAWGRKALDIAENEMPGLMR K V A G R K 3 1 0 1 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 1 0 0 11 0 1127.6087 P23526 P23526 9 19 AHCY Adenosylhomocysteinase yes yes 2 0.00032567 87.308 1 1.6823 1.6978 NaN 1 Median 1.6823 1.6978 NaN 1 0 Median NaN NaN NaN 0 0 Median 7753500 2331200 5422300 7753500 2331200 5422300 0 0 0 13633 1512 14007 36087 56543 56543 1 VADLTEQYNEQYGAVR EGHWSKECPIDRSGRVADLTEQYNEQYGAV ADLTEQYNEQYGAVRTPYTMSYGDSLYYNN R V A V R T 2 1 1 1 0 2 2 1 0 0 1 0 0 0 0 0 1 0 2 2 0 0 16 0 1854.8748 A8K9U0;Q9BWF3 A8K9U0 183 198 RBM4 RNA-binding protein 4 yes no 2 1.3462E-08 105.03 2 1 1.2881 1.3052 29.501 3 Plateau 1.2854 1.3016 3.4377 2 0 Median 0.88723 0.78222 NaN 1 0 Median 40417000 16943000 23473000 37954000 15734000 22220000 2462300 1209000 1253300 13634 788 14008 36088;36089;36090 56544;56545;56546;56547;56548;56549 56545 6 VADMALHYANK AIADTGANVVVTGGKVADMALHYANKYNIM TGGKVADMALHYANKYNIMLVRLNSKWDLR K V A N K Y 3 0 1 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 1 0 0 11 0 1231.6019 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 246 256 CCT8 T-complex protein 1 subunit theta yes no 2 1.648E-06 96.948 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13635 1592 14009 36091 56550 56550 1376 1 VADNAQQQYVR QSTLEASLELRGLARVADNAQQQYVRSRPA GLARVADNAQQQYVRSRPAPSPESIKRAKE R V A V R S 2 1 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 11 0 1290.6317 Q8TDD1 Q8TDD1 511 521 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 3.9956E-66 223.32 2 2 1.2471 1.0539 2.1495 3 Median 0.9421 1.0737 NaN 1 0 Median 1.2655 1.0412 1.7184 2 0 Median 145590000 85903000 59686000 125240000 77301000 47941000 20347000 8602300 11745000 13636 1933 14010 36092;36093;36094;36095 56551;56552;56553;56554;56555;56556 56552 6 VADNLAIQLAAVTEDK VLLCKEKPTTALLDKVADNLAIQLAAVTED ADNLAIQLAAVTEDKYEILQSVDDAAIVIK K V A D K Y 4 0 1 2 0 1 1 0 0 1 2 1 0 0 0 0 1 0 0 2 0 0 16 0 1669.8887 F4ZW64;F4ZW65;A0A024R7C7;F4ZW66;Q12906;A8K590;Q59GP7;K7EKJ9;K7EKY0;K7ER69;K7EQR9 F4ZW64 128 143 ILF3 Interleukin enhancer-binding factor 3 yes no 2 2.0944E-18 124.07 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16643000 8446600 8196800 16643000 8446600 8196800 0 0 0 13637 220 14011 36096;36097 56557;56558 56558 2 VADPVVTFCETVVETSSLK VMHDLRKMYSEIDIKVADPVVTFCETVVET VVTFCETVVETSSLKCFAETPNKKNKITMI K V A L K C 1 0 0 1 1 0 2 0 0 0 1 1 0 1 1 2 3 0 0 5 0 0 19 0 2080.0398 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 606 624 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 4.5058E-05 49.482 1 1 0.77848 0.69685 23.275 2 Median 0.80818 0.82152 NaN 1 0 Median 0.74988 0.59111 NaN 1 0 Median 22669000 11181000 11488000 16798000 7939400 8858400 5870800 3241600 2629100 13638 794 14012 36098;36099 56559;56560;56561 56559 3 VADWTGATYQDK DMPYQPFSKGDRLGKVADWTGATYQDKRYT LGKVADWTGATYQDKRYTNKYSSQFGGGSQ K V A D K R 2 0 0 2 0 1 0 1 0 0 0 1 0 0 0 0 2 1 1 1 0 0 12 0 1353.6201 O15371;B0QYA5;B0QYA6;B0QYA8 O15371 42 53 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 0.031674 44.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13639 1378 14013 36100 56562 56562 1 VAEAAIQIFR TYESLLQCLRMEDDKVAEAAIQIFRNTGHK MEDDKVAEAAIQIFRNTGHKIETDLPQIRS K V A F R N 3 1 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1116.6291 G1UI16;Q29RF7 G1UI16 694 703 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 5.0494E-10 135.83 2 2 0.71844 0.72854 10.813 4 Median 0.71195 0.77609 0.85599 2 0 Median 0.76681 0.65334 7.3216 2 0 Median 95506000 58265000 37241000 89750000 54811000 34938000 5756000 3453100 2302900 13640 1270 14014 36101;36102;36103;36104 56563;56564;56565;56566;56567 56564 5 VAEDEAEAAAAAK MSLAGAEKNGLVKIKVAEDEAEAAAAAKFT IKVAEDEAEAAAAAKFTGLSKEELLFWLGW K V A A K F 7 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 13 0 1244.5885 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599;F5H0E2;H0YFS2;F5H867;B4E3E4 B4E2Z3 47 59 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.00011207 74.944 2 2 1.2829 1.1411 22.137 2 Median 1.317 1.3345 NaN 1 0 Median 1.2497 0.97577 NaN 1 0 Median 20825000 7767400 13057000 17387000 6247100 11140000 3437200 1520300 1916900 13641 1072 14015 36105;36106;36107;36108 56568;56569;56570;56571;56572 56569 5 VAEEHAPSIVFIDEIDAIGTK KYLGDGPKLVRELFRVAEEHAPSIVFIDEI PSIVFIDEIDAIGTKRYDSNSGGEREIQRT R V A T K R 3 0 0 2 0 0 3 1 1 4 0 1 0 1 1 1 1 0 0 2 0 0 21 0 2253.1529 Q53XL8;Q53HB3;P62191 Q53XL8 273 293 PSMC1 26S protease regulatory subunit 4 yes no 3 7.7679E-09 76.704 2 2.0508 2.1061 12.316 2 Median 2.0508 2.1061 12.316 2 0 Median NaN NaN NaN 0 0 Median 41842000 12064000 29778000 41842000 12064000 29778000 0 0 0 13642 1634 14016 36109;36110 56573;56574;56575;56576;56577 56576 5 VAEELALEQAK GAYGASVSDEELKRRVAEELALEQAKKESE LKRRVAEELALEQAKKESEDQKRLKQAKEL R V A A K K 3 0 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1199.6398 A4D1N4;C9JRZ6;Q9NX63;B7Z1X9;F8WAR4 A4D1N4 66 76 CHCHD3 MICOS complex subunit MIC19 yes no 2 5.028E-14 150.35 2 2 1.3771 1.3189 7.1744 4 Median 1.2144 1.3604 5.3602 2 0 Median 1.5856 1.2561 7.8753 2 0 Median 173260000 74695000 98562000 165220000 71818000 93404000 8034900 2877500 5157400 13643 664 14017 36111;36112;36113;36114 56578;56579;56580;56581;56582;56583;56584;56585 56579 8 VAEFSLSGSQR TINLQISLVKIINERVAEFSLSGSQRNICA INERVAEFSLSGSQRNICAVLRCCQGILST R V A Q R N 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 3 0 0 0 1 0 0 11 0 1179.5884 A8K4P8;Q14146;Q6PCC8 A8K4P8 107 117 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 2 0.0053568 56.359 1 1.0804 1.0733 NaN 1 Median 1.0804 1.0733 NaN 1 0 Median NaN NaN NaN 0 0 Median 8681000 4403800 4277300 8681000 4403800 4277300 0 0 0 13644 738 14018 36115 56586 56586 1 VAEITELILK LKDQVLRCSKIAGVKVAEITELILKALEND IAGVKVAEITELILKALENDQKVRKEGGKF K V A L K A 1 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1127.6802 B4DXG8;A5PLM5;Q06265;D6RIY6;D6R905;H0Y9L5 B4DXG8 258 267 EXOSC9 Exosome complex component RRP45 yes no 2 2.4826E-06 110.87 2 2 0.9152 0.85939 5.9467 4 Median 0.83736 0.89836 3.3453 2 0 Median 1.017 0.82062 3.6032 2 0 Median 69378000 35740000 33638000 54598000 28845000 25754000 14780000 6895600 7884200 13645 675 14019 36116;36117;36118;36119 56587;56588;56589;56590;56591;56592;56593;56594 56590 8 VAELLLLHGAEPNCADPATLTR YGRRPIQVMMMGSARVAELLLLHGAEPNCA HGAEPNCADPATLTRPVHDAAREGFLDTLV R V A T R P 4 1 1 1 1 0 2 1 1 0 5 0 0 0 2 0 2 0 0 1 0 0 22 0 2360.2158 J3QRG6;K7PML8;P42771;K7ES20;L8E941;K7ENC6;D1LYX3;K7PPU3;R9S252;P42772 J3QRG6 59 80 CDKN2A;CDKN2B;p16ink4a Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B yes no 3 4.8012E-09 75.358 2 2.0261 2.046 6.4816 2 Median 2.0261 2.046 6.4816 2 0 Median NaN NaN NaN 0 0 Median 21901000 8591600 13309000 21901000 8591600 13309000 0 0 0 13646 1339 14020 36120;36121 56595;56596;56597;56598;56599 56598 5 VAFDPEQK KTDKSILVSPTGPSRVAFDPEQKPLHGVLK SPTGPSRVAFDPEQKPLHGVLKTPTSSPAS R V A Q K P 1 0 0 1 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 8 0 932.46035 Q14684 Q14684 713 720 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.011754 69.198 2 1 0.94763 1.0315 16.746 3 Median 0.93848 0.98272 6.8503 2 0 Median 1.6228 1.2972 NaN 1 0 Median 83269000 40238000 43032000 74311000 36922000 37389000 8957800 3315400 5642300 13647 1740 14021 36122;36123;36124 56600;56601;56602;56603;56604;56605 56603 6 VAFHPARPFLLVASQR RSQSPFRRSHGQVQRVAFHPARPFLLVASQ AFHPARPFLLVASQRSVRLYHLLRQELTKK R V A Q R S 3 2 0 0 0 1 0 0 1 0 2 0 0 2 2 1 0 0 0 2 0 0 16 1 1808.021 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 585 600 BOP1 Ribosome biogenesis protein BOP1 yes no 4 0.039815 15.884 1 1 1.2197 1.2295 8.8956 2 Median 1.0407 1.1545 NaN 1 0 Median 1.4296 1.3093 NaN 1 0 Median 20865000 9678700 11186000 10380000 5792200 4587300 10485000 3886500 6598500 13648 1726 14022 36125;36126 56606;56607 56606 1 VAFITGGGTGLGK ______________________________ GKVAFITGGGTGLGKGMTTLLSSLGAQCVI K V A G K G 1 0 0 0 0 0 0 5 0 1 1 1 0 1 0 0 2 0 0 1 0 0 13 0 1176.6503 E5RJD2;E5RJG7;Q7LDK6;E5RFV2;A0A024R9D7;Q16698;E5RID6 E5RJD2 11 23 DECR1;DECR 2,4-dienoyl-CoA reductase, mitochondrial yes no 2 0.0020343 55.401 1 0.95547 0.9659 NaN 1 Median 0.95547 0.9659 NaN 1 0 Median NaN NaN NaN 0 0 Median 8717300 4020800 4696500 8717300 4020800 4696500 0 0 0 13649 277 14023 36127 56608 56608 1 VAFSVAR GLRKVACIGAWHPARVAFSVARAGQKGYHH IGAWHPARVAFSVARAGQKGYHHRTEINKK R V A A R A 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 7 0 748.42317 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;B5MCW2;B3KS36 P39023 262 268 RPL3;rpl3 60S ribosomal protein L3 no no 2 2.5674E-11 170.43 2 2 1.0355 1.2113 15.716 4 Linear 0.99905 1.1787 7.1051 2 0 Median 1.0441 0.90668 1.4436 2 0 Median 2120300000 992180000 1128100000 1981500000 925540000 1056000000 138800000 66641000 72158000 13650 1554;936 14024 36128;36129;36130;36131 56609;56610;56611;56612;56613;56614;56615;56616;56617;56618 56613 10 VAFVDMLLK PALRYSLHDNSEKVRVAFVDMLLKIKAVRA NSEKVRVAFVDMLLKIKAVRAAKFWKICPM R V A L K I 1 0 0 1 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 9 0 1034.5834 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 477 485 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.016072 61.962 1 4 1.6395 1.4095 21.73 4 Median NaN NaN NaN 0 0 Median 1.6395 1.4095 21.73 4 0 Median 7635400 2052500 5583000 1724300 0 1724300 5911100 2052500 3858700 13651 1887 14025;14026 36132;36133;36134;36135;36136 56619;56620;56621;56622;56623;56624 56619 1736 6 VAFVIPPVVAAPPSLR TLCRCGESLQDVIDRVAFVIPPVVAAPPSL AFVIPPVVAAPPSLRVPRPPPLYSHRMRIL R V A L R V 3 1 0 0 0 0 0 0 0 1 1 0 0 1 4 1 0 0 0 4 0 0 16 0 1631.9763 Q96L91;A7E2D7 Q96L91 1831 1846 EP400 E1A-binding protein p400 yes no 2 0.0019286 43.084 2 0.74216 0.74135 7.8277 2 Median 0.74216 0.74135 7.8277 2 0 Median NaN NaN NaN 0 0 Median 19958000 10948000 9010500 19958000 10948000 9010500 0 0 0 13652 1977 14027 36137;36138 56625;56626;56627;56628;56629 56626 5 VAGALVQNTEK CAGGPRKGYMGHLTRVAGALVQNTEKGPNA HLTRVAGALVQNTEKGPNAEQLRQLLKELP R V A E K G 2 0 1 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1128.6139 Q9UPN7 Q9UPN7 470 480 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 yes yes 2 0.001528 82.645 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6926400 0 6926400 6926400 0 6926400 0 0 0 13653 2117 14028 36139 56630 56630 1 VAGFDLDGTLITTR KLLVFTAAGVKPQGKVAGFDLDGTLITTRS KVAGFDLDGTLITTRSGKVFPTGPSDWRIL K V A T R S 1 1 0 2 0 0 0 2 0 1 2 0 0 1 0 0 3 0 0 1 0 0 14 0 1477.7777 M0R3C8;A0A0D9SFL2;M0QYH2;A0A1S5RA93;Q96T60;M0QYI1 M0R3C8 167 180 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 0.00076458 79.693 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13654 526 14029 36140 56631 56631 1 VAGHPLAQNER FIEERKQGLEQFINKVAGHPLAQNERCLHM FINKVAGHPLAQNERCLHMFLQDEIIDKSY K V A E R C 2 1 1 0 0 1 1 1 1 0 1 0 0 0 1 0 0 0 0 1 0 0 11 0 1190.6156 O60493 O60493 129 139 SNX3 Sorting nexin-3 yes yes 2 0.0055485 56.013 1 2.9387 3.2208 NaN 1 Median 2.9387 3.2208 NaN 1 0 Median NaN NaN NaN 0 0 Median 1978700 496690 1482100 1978700 496690 1482100 0 0 0 13655 1395 14030 36141 56632 56632 1 VAGHPNIVINNAAGNFISPTER RDPDMVQNTVSELIKVAGHPNIVINNAAGN VINNAAGNFISPTERLSPNAWKTITDIVLN K V A E R L 3 1 4 0 0 0 1 2 1 3 0 0 0 1 2 1 1 0 0 2 0 0 22 0 2290.1818 E5RJD2;E5RJG7;Q7LDK6;E5RFV2;A0A024R9D7;Q16698 E5RJD2 84 105 DECR1;DECR 2,4-dienoyl-CoA reductase, mitochondrial yes no 3 0.003117 34.793 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7092500 7092500 0 7092500 7092500 0 0 0 0 13656 277 14031 36142 56633 56633 1 VAGHSLGYGFVNYVTAK SSIGEVESAKLIRDKVAGHSLGYGFVNYVT GHSLGYGFVNYVTAKDAERAINTLNGLRLQ K V A A K D 2 0 1 0 0 0 0 3 1 0 1 1 0 1 0 1 1 0 2 3 0 0 17 0 1781.9101 Q15717;M0QZR9 Q15717 56 72 ELAVL1 ELAV-like protein 1 yes no 3 0.00048615 39.849 1 1.7246 1.7601 NaN 1 Median 1.7246 1.7601 NaN 1 0 Median NaN NaN NaN 0 0 Median 31282000 12868000 18414000 31282000 12868000 18414000 0 0 0 13657 1764 14032 36143 56634 56634 1 VAGIESHSELQISR ECEKARQELQEAKEKVAGIESHSELQISRQ KVAGIESHSELQISRQQNELAELHANLARA K V A S R Q 1 1 0 0 0 1 2 1 1 2 1 0 0 0 0 3 0 0 0 1 0 0 14 0 1524.7896 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q4LE64;Q14980 Q4LE64 856 869 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 1.2557E-37 168.02 6 2 0.95268 1.0666 27.574 6 Median 0.80651 0.91059 28.705 4 0 Median 1.4036 1.1851 1.0902 2 0 Median 254850000 138470000 116380000 241850000 133240000 108610000 12999000 5226200 7773000 13658 186;1747 14033 36144;36145;36146;36147;36148;36149;36150;36151 56635;56636;56637;56638;56639;56640;56641;56642;56643;56644;56645;56646;56647;56648 56642 14 VAGLGTPSFAPYEANVDFEIR RLVAPARRLLEQGIRVAGLGTPSFAPYEAN PSFAPYEANVDFEIRFMVDTDIVGCNWLEL R V A I R F 3 1 1 1 0 0 2 2 0 1 1 0 0 2 2 1 1 0 1 2 0 0 21 0 2252.1113 M0QZR8;Q59FA0;A0A024R4F4;M0R2B7;P28340;Q308M6 M0QZR8 233 253 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.0032569 30.483 1 0.88434 0.87562 NaN 1 Median 0.88434 0.87562 NaN 1 0 Median NaN NaN NaN 0 0 Median 12277000 5627900 6649100 12277000 5627900 6649100 0 0 0 13659 155 14034 36152 56649 56649 1 VAGQDGSVVQFK KEGVKTENNDHINLKVAGQDGSVVQFKIKR NLKVAGQDGSVVQFKIKRHTPLSKLMKAYC K V A F K I 1 0 0 1 0 2 0 2 0 0 0 1 0 1 0 1 0 0 0 3 0 0 12 0 1233.6354 A0A024R8S3;P61956;Q6EEV6 A0A024R8S3 22 33 SUMO2;SUMO4 Small ubiquitin-related modifier;Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 4 no no 2 3.5555E-60 208.63 8 2 0.93613 1.09 21.088 6 Median 0.92308 1.0116 8.2297 4 0 Median 1.7828 1.4987 0.20448 2 0 Median 1591500000 772510000 819020000 1490600000 736230000 754330000 100960000 36274000 64682000 13660 256 14035 36153;36154;36155;36156;36157;36158;36159;36160;36161;36162 56650;56651;56652;56653;56654;56655;56656;56657;56658;56659;56660;56661;56662;56663;56664;56665;56666;56667 56657 18 VAGVVAPTLPR KLIDSWMGKGAAKLRVAGVVAPTLPREDLE AKLRVAGVVAPTLPREDLEKIIAHFLIQQY R V A P R E 2 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 1 0 0 3 0 0 11 0 1078.6499 A0A024RAV2;P46063 A0A024RAV2 529 539 RECQL ATP-dependent DNA helicase Q1 yes no 2 0.00044003 78.334 2 2 0.94508 0.88963 25.797 4 Median 1.0347 1.0912 13.753 2 0 Median 0.83846 0.72835 13.161 2 0 Median 63993000 34974000 29019000 60221000 32804000 27417000 3772600 2170700 1602000 13661 314 14036 36163;36164;36165;36166 56668;56669;56670;56671;56672;56673 56668 6 VAHFLEK ADKVLPTIPKEQRTRVAHFLEKQGFKQQAL IPKEQRTRVAHFLEKQGFKQQALTVSTDPE R V A E K Q 1 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 842.46504 P35606 P35606 621 627 COPB2 Coatomer subunit beta yes yes 2 0.027367 73.637 2 1.5245 1.6187 NaN 1 Median 1.5245 1.6187 NaN 1 0 Median NaN NaN NaN 0 0 Median 34817000 6178700 28638000 34817000 6178700 28638000 0 0 0 13662 1545 14037 36167;36168 56674;56675 56674 2 VAHSDKPGSTSTASFR EENRHLRDEGLRLRKVAHSDKPGSTSTASF AHSDKPGSTSTASFRDNVTSPLPSLLVVIA K V A F R D 2 1 0 1 0 0 0 1 1 0 0 1 0 1 1 4 2 0 0 1 0 0 16 1 1646.8012 A8KA83;Q9P0L0 A8KA83 199 214 VAPA Vesicle-associated membrane protein-associated protein A yes no 2;3 4.9394E-06 97.214 3 1 2.4717 2.7336 NaN 1 Median 2.4717 2.7336 NaN 1 0 Median NaN NaN NaN 0 0 Median 6077000 2964700 3112300 4739000 2964700 1774400 1338000 0 1338000 13663 791 14038 36169;36170;36171;36172 56676;56677;56678;56679;56680 56679 5 VAIAENLLDVIK SQKVDTLPYVPEPIKVAIAENLLDVIKDTR PIKVAIAENLLDVIKDTRSKEITSDTMEQS K V A I K D 2 0 1 1 0 0 1 0 0 2 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1296.7653 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1666 1677 AHCTF1 Protein ELYS yes no 2 2.7248E-08 119.22 2 2 1.6202 1.5459 14.247 4 Median 1.244 1.3936 0.69594 2 0 Median 2.1517 1.7728 5.3953 2 0 Median 231100000 93286000 137820000 158960000 69803000 89152000 72146000 23482000 48664000 13664 1945 14039 36173;36174;36175;36176 56681;56682;56683;56684;56685;56686;56687;56688 56688 8 VAIFTLINEINK KEVNETNKRVEQEIKVAIFTLINEINKKGK EIKVAIFTLINEINKKGKSLLQQLENVTKE K V A N K K 1 0 2 0 0 0 1 0 0 3 1 1 0 1 0 0 1 0 0 1 0 0 12 0 1373.7919 H0Y612;A0A024R0F6;Q9UPN9 H0Y612 101 112 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 2 0.02594 36.585 1 1.1165 1.1891 NaN 1 Median 1.1165 1.1891 NaN 1 0 Median NaN NaN NaN 0 0 Median 3667900 1525000 2143000 3667900 1525000 2143000 0 0 0 13665 45 14040 36177 56689 56689 1 VAIHEAMEQQTISIAK VVCIDEFDKMREDDRVAIHEAMEQQTISIA AIHEAMEQQTISIAKAGITTTLNSRCSVLA R V A A K A 3 0 0 0 0 2 2 0 1 3 0 1 1 0 0 1 1 0 0 1 0 0 16 0 1767.9189 B1AHB1;Q53FG5;B1AHB0;A8K521;P33992;B4DQ39;B3KVF0;Q59F49 B1AHB1 413 428 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 3 3.9076E-05 69.878 1 2.2461 2.2783 NaN 1 Median 2.2461 2.2783 NaN 1 0 Median NaN NaN NaN 0 0 Median 29614000 8476000 21138000 29614000 8476000 21138000 0 0 0 13666 745 14041 36178 56690 56690 581 1 VAIHYINPPNPAK QNKPTGFALGSIEGRVAIHYINPPNPAKDN GRVAIHYINPPNPAKDNFTFKCHRSNGTNT R V A A K D 2 0 2 0 0 0 0 0 1 2 0 1 0 0 3 0 0 0 1 1 0 0 13 0 1432.7827 Q5J8M4;P78406;E9PQ57 Q5J8M4 224 236 RAE1 mRNA export factor yes no 3 0.0029957 42.475 1 2.4454 2.5438 NaN 1 Median 2.4454 2.5438 NaN 1 0 Median NaN NaN NaN 0 0 Median 18987000 5166400 13820000 18987000 5166400 13820000 0 0 0 13667 1664 14042 36179 56691 56691 1 VAILVDDMADTCGTICHAADK NEVDRMVLVGDVKDRVAILVDDMADTCGTI DMADTCGTICHAADKLLSAGATRVYAILTH R V A D K L 4 0 0 4 2 0 0 1 1 2 1 1 1 0 0 0 2 0 0 2 0 0 21 0 2275.0283 Q53FW2;P60891;B1ALA9;B7ZB02;A0A140VK41;P11908;B2R860 Q53FW2 215 235 PRPS1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2 no no 3 2.4663E-08 72.09 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5690200 0 5690200 5690200 0 5690200 0 0 0 13668 1626;616 14043 36180 56692 56692 465 1 VAISNPPQR VMKMDGMTIKENIIKVAISNPPQRKVPEKP KENIIKVAISNPPQRKVPEKPETRKAPGGP K V A Q R K 1 1 1 0 0 1 0 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 9 0 980.54033 Q15020;B4DYA2;H0YHU8 Q15020 873 881 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.043578 49.097 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4738000 0 4738000 4738000 0 4738000 0 0 0 13669 1748 14044 36181 56693 56693 1 VALAGLLGFGLGK QGYLAANSRFGSLPKVALAGLLGFGLGKVS PKVALAGLLGFGLGKVSYIGVCQSKFHFFE K V A G K V 2 0 0 0 0 0 0 4 0 0 4 1 0 1 0 0 0 0 0 1 0 0 13 0 1214.7387 Q56VL3 Q56VL3 87 99 OCIAD2 OCIA domain-containing protein 2 yes yes 2 0.00021871 90.629 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 858560 858560 0 858560 858560 0 0 0 0 13670 1797 14045 36182;36183 56694;56695 56695 2 VALEFGSEEPR RGNQSGRSPNNPFSRVALEFGSEEPRHSEA PFSRVALEFGSEEPRHSEAADSPRSSTVHI R V A P R H 1 1 0 0 0 0 3 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 11 0 1232.6037 A0A024R0F1;Q9UNY4 A0A024R0F1 891 901 TTF2 Transcription termination factor 2 yes no 2 7.2472E-13 121.73 2 1 1.0041 0.97606 19.787 2 Median 0.73747 0.84862 NaN 1 0 Median 1.3672 1.1226 NaN 1 0 Median 83438000 43600000 39839000 74731000 39866000 34865000 8707300 3733200 4974100 13671 44 14046 36184;36185;36186 56696;56697;56698;56699;56700 56696 5 VALELPASK LREEVPPILQHHMLKVALELPASKFLWLKA QHHMLKVALELPASKFLWLKAQEGPDAEII K V A S K F 2 0 0 0 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 9 0 926.54368 O60287 O60287 608 616 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.005479 66.621 1 1 1.1126 1.1631 NaN 1 Median 1.1126 1.1631 NaN 1 0 Median NaN NaN NaN 0 0 Median 13252000 5375500 7876400 12118000 5375500 6742300 1134100 0 1134100 13672 1392 14047 36187;36188 56701;56702 56701 2 VALGHGLK DNIQAGELTEGIWRRVALGHGLKLLTKNGH TEGIWRRVALGHGLKLLTKNGHVYKYDGFR R V A L K L 1 0 0 0 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 793.48102 A0A024R4Z6;Q08945;Q59GH7 A0A024R4Z6 56 63 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0080518 80.294 2 2 0.82177 0.81451 4.7251 4 Median 0.70867 0.83246 3.7923 2 0 Median 0.96617 0.79004 5.0236 2 0 Median 700860000 395020000 305840000 640510000 364130000 276380000 60349000 30887000 29462000 13673 167 14048 36189;36190;36191;36192 56703;56704;56705;56706;56707;56708 56704 6 VALGNTWK APPEGQTVLDGLEFKVALGNTWKENLTELS LDGLEFKVALGNTWKENLTELSGGQRSLVA K V A W K E 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 8 0 887.4865 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 1072 1079 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0019889 103.91 1 2 1.7088 1.3675 25.966 3 Median 0.78614 0.88857 NaN 1 0 Median 1.7326 1.3918 2.4817 2 0 Median 187340000 104340000 82997000 143690000 88162000 55529000 43647000 16179000 27468000 13674 69 14049 36193;36194;36195 56709;56710;56711 56709 3 VALIGFPSVGK SKGEGFDVMKSGDARVALIGFPSVGKSTFL GDARVALIGFPSVGKSTFLSLMTSTASEAA R V A G K S 1 0 0 0 0 0 0 2 0 1 1 1 0 1 1 1 0 0 0 2 0 0 11 0 1086.6437 A8MZF9;P55039;J3QL90;J3KRL5;B4DIG2;J3QR71;J3QKV7;J3QRI9;J3QKW7 A8MZF9 65 75 DRG2 Developmentally-regulated GTP-binding protein 2 yes no 2 0.001998 63.216 2 2.0228 2.0427 3.5898 2 Median 2.0228 2.0427 3.5898 2 0 Median NaN NaN NaN 0 0 Median 20235000 6490700 13744000 20235000 6490700 13744000 0 0 0 13675 801 14050 36196;36197 56712;56713;56714;56715 56713 4 VALLDVFR SQKVELSESRLKAFKVALLDVFREAHAQSI SRLKAFKVALLDVFREAHAQSIGMNRLTES K V A F R E 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 2 0 0 8 0 931.5491 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 749 756 MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.046812 55.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13676 568 14051 36198 56716 56716 1 VALSEPQPER AEIISLCKRYPGFMRVALSEPQPERRFFRR PGFMRVALSEPQPERRFFRRGWVTFDRSVN R V A E R R 1 1 0 0 0 1 2 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 10 0 1124.5826 Q9BXP5;H7C3A1;H7C1K0 Q9BXP5 450 459 SRRT Serrate RNA effector molecule homolog yes no 2 0.051194 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10961000 10961000 0 10961000 10961000 0 0 0 0 13677 2013 14052 36199 56717 56717 1 VALSEPQPERR AEIISLCKRYPGFMRVALSEPQPERRFFRR GFMRVALSEPQPERRFFRRGWVTFDRSVNI R V A R R F 1 2 0 0 0 1 2 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 11 1 1280.6837 Q9BXP5;H7C3A1;H7C1K0 Q9BXP5 450 460 SRRT Serrate RNA effector molecule homolog yes no 3 0.0004537 51.252 1 1.2788 1.3354 NaN 1 Median 1.2788 1.3354 NaN 1 0 Median NaN NaN NaN 0 0 Median 13434000 5226000 8208200 13434000 5226000 8208200 0 0 0 13678 2013 14053 36200 56718 56718 1 VALTGLTVAEYFR LVYGQMNEPPGARARVALTGLTVAEYFRDQ ARVALTGLTVAEYFRDQEGQDVLLFIDNIF R V A F R D 2 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 2 0 1 2 0 0 13 0 1438.782 H0YH81;Q0QEN7;V9HW31;P06576;F8W0P7 H0YH81 219 231 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 2 5.4353E-20 150.1 2 1 1.3889 1.5018 62.975 3 Plateau 1.3078 1.3946 10.468 2 0 Median 0.54376 0.47209 NaN 1 0 Median 40633000 17157000 23477000 38284000 15602000 22682000 2349200 1554600 794560 13679 1292 14054 36201;36202;36203 56719;56720;56721;56722;56723 56722 5 VALTLAR ENIKRKDHIDYQKDKVALTLARLARHVEVE HIDYQKDKVALTLARLARHVEVEKQQKEEK K V A A R L 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 7 0 742.47012 Q4KMR5;E9PH99;Q9Y4E5;D6RIA1 Q4KMR5 78 84 ZNF451 Zinc finger protein 451 yes no 2 0.030033 69.383 2 0.96648 0.97408 0.65658 2 Median 0.96648 0.97408 0.65658 2 0 Median NaN NaN NaN 0 0 Median 25832000 14306000 11526000 25832000 14306000 11526000 0 0 0 13680 1236 14055 36204;36205 56724;56725 56725 2 VALVGPNGAGK CIYNNLEFGIDLDTRVALVGPNGAGKSTLL LDTRVALVGPNGAGKSTLLKLLTGELLPTD R V A G K S 2 0 1 0 0 0 0 3 0 0 1 1 0 0 1 0 0 0 0 2 0 0 11 0 981.56073 A0A090N7X1;A0A090N7Y2;Q9UG63 A0A090N7X1 426 436 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.0082908 51.066 1 1.3983 1.4185 NaN 1 Median 1.3983 1.4185 NaN 1 0 Median NaN NaN NaN 0 0 Median 13409000 5186800 8222600 13409000 5186800 8222600 0 0 0 13681 455 14056 36206 56726 56726 1 VALVNDSLSDVTSTTSSR DVQATGRIADDADPRVALVNDSLSDVTSTT VNDSLSDVTSTTSSRVDDHDSEEICLDHLC R V A S R V 1 1 1 2 0 0 0 0 0 0 2 0 0 0 0 5 3 0 0 3 0 0 18 0 1850.9222 Q7Z2W4;A8K9U6;Q05DV5 Q7Z2W4 486 503 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 8.6129E-12 110.92 2 2 1.5044 1.6289 32.343 4 Linear 1.4843 1.6067 6.7474 2 0 Median 1.0928 0.92136 0.70263 2 0 Median 97525000 41726000 55799000 84589000 35767000 48822000 12936000 5958600 6977700 13682 1873 14057 36207;36208;36209;36210 56727;56728;56729;56730;56731;56732;56733 56727 7 VANFSNMDEDDIELEPER PGPLTVGDELLSQFKVANFSNMDEDDIELE FSNMDEDDIELEPERNSKNWEEIIPEDQRR K V A E R N 1 1 2 3 0 0 4 0 0 1 1 0 1 1 1 1 0 0 0 1 0 0 18 0 2121.9161 O14646 O14646 1021 1038 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 5.629E-06 78.763 2 0.8866 0.90184 5.3661 2 Median 0.8866 0.90184 5.3661 2 0 Median NaN NaN NaN 0 0 Median 27270000 15850000 11420000 27270000 15850000 11420000 0 0 0 13683 1366 14058 36211;36212 56734;56735;56736;56737;56738;56739;56740;56741;56742 56741 1034 9 VANPSGNLTETYVQDR ARALTQTGGPHVKARVANPSGNLTETYVQD ANPSGNLTETYVQDRGDGMYKVEYTPYEEG R V A D R G 1 1 2 1 0 1 1 1 0 0 1 0 0 0 1 1 2 0 1 2 0 0 16 0 1762.8486 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1297 1312 FLNA;FLJ00119 Filamin-A yes no 2 0.0003471 53.034 1 1.3106 1.4655 NaN 1 Median 1.3106 1.4655 NaN 1 0 Median NaN NaN NaN 0 0 Median 44689000 19923000 24766000 44689000 19923000 24766000 0 0 0 13684 1504 14059 36213 56743 56743 1 VANPSSDADGQSLK TLWRPMPKLAPLGLKVANPSSDADGQSLKV KVANPSSDADGQSLKVMPCLAPIAAKVGSV K V A L K V 2 0 1 2 0 1 0 1 0 0 1 1 0 0 1 3 0 0 0 1 0 0 14 0 1387.6579 B9EGR5;Q8IWI9 B9EGR5 2787 2800 MGA MAX gene-associated protein yes no 2 0.00015138 87.184 2 0.52789 0.54602 NaN 1 Median 0.52789 0.54602 NaN 1 0 Median NaN NaN NaN 0 0 Median 16723000 12585000 4138400 16723000 12585000 4138400 0 0 0 13685 1121 14060 36214;36215 56744;56745;56746 56746 3 VANTSSFHTTPNTSLGMVQATPSK PQSGAEIKEGCETHKVANTSSFHTTPNTSL TPNTSLGMVQATPSKVQPSPTVHTKEALGF K V A S K V 2 0 2 0 0 1 0 1 1 0 1 1 1 1 2 4 5 0 0 2 0 0 24 0 2475.2064 A0JLU2;B4DYG2;O43683;A8K5A6 A0JLU2 432 455 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 3 2.0748E-09 55.228 1 1.1377 1.1795 NaN 1 Median 1.1377 1.1795 NaN 1 0 Median NaN NaN NaN 0 0 Median 11272000 4468000 6804300 11272000 4468000 6804300 0 0 0 13686 641 14061 36216 56747 56747 499 1 VANVPNTSLLVNIPQPTPASLK VQIQGQRIIQQGLIRVANVPNTSLLVNIPQ SLLVNIPQPTPASLKGTTATSAQANSTPTS R V A L K G 2 0 3 0 0 1 0 0 0 1 3 1 0 0 4 2 2 0 0 3 0 0 22 0 2272.2791 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 294 315 GATAD2A Transcriptional repressor p66-alpha yes no 2 4.2111E-11 88.311 2 2 1.3472 1.1856 42.139 4 Median 0.82656 0.8257 2.5799 2 0 Median 2.1521 1.7111 3.2977 2 0 Median 87453000 39046000 48407000 53540000 28843000 24697000 33913000 10203000 23710000 13687 229 14062 36217;36218;36219;36220 56748;56749;56750;56751;56752;56753;56754 56749 7 VANVSAAEDSVSQR SMIQQLATYCARDVRVANVSAAEDSVSQRA RVANVSAAEDSVSQRAVLMEKPDVVVGTPS R V A Q R A 3 1 1 1 0 1 1 0 0 0 0 0 0 0 0 3 0 0 0 3 0 0 14 0 1431.6954 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 115 128 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 2.0173E-31 151.26 2 2 1.2168 1.0427 3.1832 3 Median 0.95387 1.0873 NaN 1 0 Median 1.2203 1.032 1.4554 2 0 Median 174410000 72272000 102140000 130170000 52463000 77710000 44238000 19809000 24429000 13688 2081 14063 36221;36222;36223;36224 56755;56756;56757;56758;56759;56760;56761;56762;56763;56764 56755 10 VANVSLLALYK HAVGDIPGVRFKVVKVANVSLLALYKGKKE KVVKVANVSLLALYKGKKERPRS_______ K V A Y K G 2 0 1 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 2 0 0 11 0 1189.7071 A8K517;P62266 A8K517 125 135 RPS23 40S ribosomal protein S23 yes no 1;2 1.4688E-17 161.92 7 2 0.78693 0.93383 26.133 7 Median 0.77781 0.91012 9.5558 5 0 Median 1.6126 1.4526 1.7944 2 0 Median 9655100000 4934900000 4720200000 7168600000 3999000000 3169600000 2486500000 935970000 1550500000 13689 744 14064 36225;36226;36227;36228;36229;36230;36231;36232;36233 56765;56766;56767;56768;56769;56770;56771;56772;56773;56774;56775;56776;56777;56778;56779;56780;56781;56782;56783;56784;56785;56786;56787;56788;56789;56790;56791;56792;56793;56794;56795;56796;56797;56798;56799 56777 34 VAPAPAAADAEVEQTDAESK GAETMAAEAESAQTRVAPAPAAADAEVEQT AAADAEVEQTDAESKDAVPTE_________ R V A S K D 7 0 0 2 0 1 3 0 0 0 0 1 0 0 2 1 1 0 0 2 0 0 20 0 1968.9276 Q8NE02;O43823;Q9UG73 Q8NE02 667 686 AKAP8;DKFZp586B1222 A-kinase anchor protein 8 yes no 2 2.566E-07 77.42 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15560000 0 15560000 15560000 0 15560000 0 0 0 13690 1390 14065 36234;36235 56800;56801 56801 2 VAPAPAVVK ______________________________ KAKGKKVAPAPAVVKKQEAKKVVNPLFEKR K V A V K K 3 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 3 0 0 9 0 850.52764 P62424;Q5T8U3 P62424 12 20 RPL7A 60S ribosomal protein L7a yes no 2 0.002027 77.741 2 1 0.93725 1.104 28.088 3 Median 0.93806 1.1081 0.52377 2 0 Median 0.81046 0.68129 NaN 1 0 Median 1036300000 551270000 485000000 985750000 524080000 461670000 50520000 27187000 23333000 13691 1648 14066 36236;36237;36238 56802;56803;56804;56805 56803 4 VAPEEHPVLLTEAPLNPK DMEKIWHHTFYNELRVAPEEHPVLLTEAPL EEHPVLLTEAPLNPKANREKMTQIMFETFN R V A P K A 2 0 1 0 0 0 3 0 1 0 3 1 0 0 4 0 1 0 0 2 0 0 18 0 1953.0571 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;G5E9R0;E7EVS6;Q562Z7;Q562X9;Q562S0;Q562R8;Q562P0;Q562N0;Q562L5;Q562Y6;Q562N8;Q562Z4;Q562V5;Q562U2;Q562N6;Q562P9;Q562N4;Q562L6;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;A1E282;Q562L9 P63261 96 113 PS1TP5BP1;ACTB;ACT;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 4.5041E-22 146.96 10 3 1.9745 2.267 51.727 5 Median 1.9644 2.2874 59.246 4 0 Median 2.6118 2.1856 NaN 1 0 Median 11148000000 242440000 10905000000 9768400000 228510000 9539900000 1379200000 13929000 1365200000 13692 1624;1656;1796 14067 36239;36240;36241;36242;36243;36244;36245;36246;36247;36248;36249;36250;36251 56806;56807;56808;56809;56810;56811;56812;56813;56814;56815;56816;56817;56818;56819;56820;56821;56822;56823;56824;56825;56826;56827;56828;56829 56813 24 VAQDWLK LAAKFVNQLKGESRRVAQDWLKEARMTLET QLKGESRRVAQDWLKEARMTLETKQIVEIL R V A L K E 1 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 7 0 858.45995 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 720 726 IMMT MICOS complex subunit MIC60 no no 2 0.030033 69.383 1 0.75721 0.81377 NaN 1 Median 0.75721 0.81377 NaN 1 0 Median NaN NaN NaN 0 0 Median 39834000 21510000 18323000 39834000 21510000 18323000 0 0 0 13693 1774;1029;1128 14068 36252 56830 56830 1 VAQIQNAGLGEFR AEKWRRQIIGEISKKVAQIQNAGLGEFRIR KKVAQIQNAGLGEFRIRDLNDEINKLLREK K V A F R I 2 1 1 0 0 2 1 2 0 1 1 0 0 1 0 0 0 0 0 1 0 0 13 0 1401.7365 Q9ULR0;D6RC18;A8MVI5 Q9ULR0 57 69 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes no 2 1.3219E-05 96.015 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8454700 0 8454700 8454700 0 8454700 0 0 0 13694 2111 14069 36253 56831 56831 1 VAQLEQVYIR NCQMSNITVTYRDGRVAQLEQVYIRGSKIR YRDGRVAQLEQVYIRGSKIRFLILPDMLKN R V A I R G 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 1 2 0 0 10 0 1217.6768 P62318 P62318 55 64 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes yes 2 8.3436E-09 124.23 2 2 0.98177 1.2568 29.87 4 Linear 1.0872 1.2245 3.9347 2 0 Median 0.8663 0.73342 5.7804 2 0 Median 130150000 64052000 66093000 115610000 56149000 59459000 14537000 7902300 6634600 13695 1646 14070 36254;36255;36256;36257 56832;56833;56834;56835;56836;56837;56838;56839 56832 8 VAQNLVGPDNVHVALSLVEYKPELQK LNKISARCIAPETLRVAQNLVGPDNVHVAL HVALSLVEYKPELQKAMEFVFGTTFVCDNM R V A Q K A 2 0 2 1 0 2 2 1 1 0 4 2 0 0 2 1 0 0 1 5 0 0 26 1 2859.5494 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 593 618 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3;4 4.0193E-46 139.79 3 4 1.5677 1.3461 32.043 7 Median 0.75005 0.88488 10.357 3 0 Plateau 1.7652 1.4949 8.9231 4 0 Median 1014500000 450730000 563750000 434880000 240260000 194620000 579600000 210470000 369120000 13696 69 14071 36258;36259;36260;36261;36262;36263;36264 56840;56841;56842;56843;56844;56845;56846;56847;56848;56849;56850;56851;56852;56853;56854 56842 15 VAQPETPVTLQFQGSK VKIAQLASITGPQSRVAQPETPVTLQFQGS AQPETPVTLQFQGSKFTLSHSQLRQLTAGQ R V A S K F 1 0 0 0 0 3 1 1 0 0 1 1 0 1 2 1 2 0 0 2 0 0 16 0 1728.9046 Q96L91;A7E2D7 Q96L91 1619 1634 EP400 E1A-binding protein p400 yes no 2 0.0010435 51.841 4 0.57559 0.58398 NaN 1 Median 0.57559 0.58398 NaN 1 0 Median NaN NaN NaN 0 0 Median 6570100 4206800 2363300 6570100 4206800 2363300 0 0 0 13697 1977 14072 36265;36266;36267;36268 56855;56856;56857;56858 56855 4 VAQPTITDNK KKGEITGEVRMPSGKVAQPTITDNKDGTVT MPSGKVAQPTITDNKDGTVTVRYAPSEAGL K V A N K D 1 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 0 0 1 0 0 10 0 1085.5717 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5F3 P21333 1815 1824 FLNA;FLJ00119 Filamin-A yes no 2 1.874E-08 122.13 2 1.3698 1.4109 6.3088 2 Median 1.3698 1.4109 6.3088 2 0 Median NaN NaN NaN 0 0 Median 44713000 19291000 25422000 44713000 19291000 25422000 0 0 0 13698 1504 14073 36269;36270 56859;56860;56861 56859 3 VAQREEELEETGNQHNDVEIEEAGEEEEK VVRNEEQKAEQEEGKVAQREEELEETGNQH HNDVEIEEAGEEEEKEIAIVHSDAEKEQEE K V A E K E 2 1 2 1 0 2 12 2 1 1 1 1 0 0 0 0 1 0 0 2 0 0 29 1 3368.4764 Q9H307;A8K964;B4DTD4;B4E392 Q9H307 312 340 PNN Pinin yes no 4 0.013495 18.965 1 1.9193 2.1625 NaN 1 Median 1.9193 2.1625 NaN 1 0 Median NaN NaN NaN 0 0 Median 14053000 4728700 9324400 14053000 4728700 9324400 0 0 0 13699 2028 14074 36271 56862;56863 56863 2 VAQVLEGFITR QVEVFRRQDAQRGMRVAQVLEGFITRKVVK RGMRVAQVLEGFITRKVVKQTVMTVVYGVT R V A T R K 1 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 1 0 0 2 0 0 11 0 1231.6925 Q59E91;Q4G0F4;O00411 Q59E91 819 829 POLRMT DNA-directed RNA polymerase;DNA-directed RNA polymerase, mitochondrial yes no 2 0.0016272 66.056 2 2.8341 2.8939 76.198 2 Median 2.8341 2.8939 76.198 2 0 Median NaN NaN NaN 0 0 Median 20269000 6791100 13477000 20269000 6791100 13477000 0 0 0 13700 1363 14075 36272;36273 56864;56865;56866 56865 3 VAQYVVR DTELQGMNEYLSSFKVAQYVVREEEMGEEE NEYLSSFKVAQYVVREEEMGEEEEVEREII K V A V R E 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 7 0 833.47594 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;Q659F1;Q659D0;Q6ZU36;B3KRD4;K7EPV1;K7ESA5;Q12873;B4DLC6 F5GWX5 1275 1281 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.0053001 132.01 2 2 0.69706 0.7796 47.097 3 Median 0.67774 0.75618 4.3124 2 0 Median 1.994 1.7067 NaN 1 0 Median 135970000 78257000 57710000 123540000 71835000 51708000 12423000 6422000 6001500 13701 515;1701 14076 36274;36275;36276;36277 56867;56868;56869;56870;56871;56872 56869 6 VARPLPAEEPER KDQDEKRRRVTSRERVARPLPAEEPERAKS RERVARPLPAEEPERAKSGTRTEKEEERDE R V A E R A 2 2 0 0 0 0 3 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 12 1 1362.7256 A0A024R7E3;P26358;Q59FP7;I6L9H2;K7ENQ6 A0A024R7E3 275 286 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.025588 72.006 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8672400 8672400 0 8672400 8672400 0 0 0 0 13702 222 14077 36278 56873 56873 1 VASAGSAISNASGER VCGTSWTYNPAAVSKVASAGSAISNASGER VASAGSAISNASGERLSQLLKKLFETQESG K V A E R L 4 1 1 0 0 0 1 2 0 1 0 0 0 0 0 4 0 0 0 1 0 0 15 0 1375.6692 B3KRA8;Q86YT6 B3KRA8 189 203 MIB1 E3 ubiquitin-protein ligase MIB1 yes no 2 1.1069E-05 92.19 1 1.4612 1.453 NaN 1 Median 1.4612 1.453 NaN 1 0 Median NaN NaN NaN 0 0 Median 7648600 3202300 4446200 7648600 3202300 4446200 0 0 0 13703 933 14078 36279 56874 56874 1 VASGNDHLVMLTADGDLYTLGCGEQGQLGR SMVPVQVQLDVPVVKVASGNDHLVMLTADG DLYTLGCGEQGQLGRVPELFANRGGRQGLE K V A G R V 2 1 1 3 1 2 1 6 1 0 5 0 1 0 0 1 2 0 1 2 0 0 30 0 3146.4761 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 177 206 RCC1 Regulator of chromosome condensation yes no 3 2.647E-11 56.156 2 1 1.0765 0.92445 10.263 3 Median 0.96152 0.99169 13.333 2 0 Median 1.1437 0.92445 NaN 1 0 Median 43149000 18384000 24765000 31618000 12960000 18658000 11531000 5423900 6107400 13704 550 14079;14080 36280;36281;36282 56875;56876;56877 56876 406 3 VASIETGLAAAAAK PSVPRQDRPVREGTRVASIETGLAAAAAKL RVASIETGLAAAAAKLSQQEEQKSKKKKSA R V A A K L 6 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 1 0 0 1 0 0 14 0 1271.7085 O75151;Q8N359;B4DH04;E7ET14;A0A087WW48;Q6P2C5;H0Y3N9;Q9UPP1;H0Y589 O75151 927 940 PHF2;PHF8 Lysine-specific demethylase PHF2;Histone lysine demethylase PHF8 no no 2 3.6332E-06 101.95 2 2 2.0035 1.5804 27.116 3 Median 1.0229 1.0231 NaN 1 0 Median 2.0622 1.6312 4.4785 2 0 Median 27053000 14800000 12253000 19268000 12323000 6945400 7785300 2477500 5307800 13705 1400;1279 14081 36283;36284;36285;36286 56878;56879;56880;56881;56882 56879 5 VASLPGDFK SACLGFQEEDPPGEKVASLPGDFKQEEVGG DPPGEKVASLPGDFKQEEVGGVKEEAGGLL K V A F K Q 1 0 0 1 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 9 0 932.49673 Q7Z5J4;A8MXE8 Q7Z5J4 803 811 RAI1 Retinoic acid-induced protein 1 yes no 2 0.0028526 80.165 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13706 1879 14082 36287 56883 56883 1 VASMPQEEQELVVTIPK IVLMAQTLEKIFLQKVASMPQEEQELVVTI SMPQEEQELVVTIPKNSHKKGAKLAALQGS K V A P K N 1 0 0 0 0 2 3 0 0 1 1 1 1 0 2 1 1 0 0 3 0 0 17 0 1896.9867 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7;E9PIQ3;H0Y799;A0A140T9X8 A0A024RCR5 177 193 BRD2 Bromodomain-containing protein 2 yes no 2 2.2041E-05 74.987 2 0.71926 0.72962 NaN 1 Median 0.71926 0.72962 NaN 1 0 Median NaN NaN NaN 0 0 Median 18566000 11298000 7268500 18566000 11298000 7268500 0 0 0 13707 367 14083 36288;36289 56884;56885;56886;56887 56886 274 4 VASSPVMVSNPATR MAVTPGTTTLPATVKVASSPVMVSNPATRM KVASSPVMVSNPATRMLKTAAAQVGTSVSS K V A T R M 2 1 1 0 0 0 0 0 0 0 0 0 1 0 2 3 1 0 0 3 0 0 14 0 1414.7238 A6NEM2;P51610 A6NEM2 595 608 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 3.1954E-05 90.653 3 0.78793 0.77845 NaN 1 Median 0.78793 0.77845 NaN 1 0 Median NaN NaN NaN 0 0 Median 15043000 5762000 9280900 15043000 5762000 9280900 0 0 0 13708 680 14084 36290;36291;36292 56888;56889;56890;56891 56890 527 4 VASTLTEEGGGGGGGGGSVAPKPPR PGSQALQVVPDLSKKVASTLTEEGGGGGGG GGGGGGGSVAPKPPRGRKKKRMLESGLPEM K V A P R G 2 1 0 0 0 0 2 9 0 0 1 1 0 0 3 2 2 0 0 2 0 0 25 1 2194.0978 D3DUR9;Q8TF68;B4DQU6;F5H8L7;E9PHB3;A9X425;A9X424;F5H105 D3DUR9 168 192 ZNF384 Zinc finger protein 384 yes no 2;3 1.2923E-13 84.166 3 2 1.2863 1.2944 34.762 4 Median 0.81023 0.95654 2.3751 2 0 Median 2.043 1.7452 1.8681 2 0 Median 136560000 71738000 64822000 111830000 63823000 48009000 24728000 7914600 16814000 13709 1195 14085 36293;36294;36295;36296;36297 56892;56893;56894;56895;56896;56897;56898;56899;56900 56895 9 VASVSQNAIVSAAGNIAR IQVYDLGQDGQGMSRVASVSQNAIVSAAGN VSQNAIVSAAGNIARTIDRSVFKPIVQIAV R V A A R T 5 1 2 0 0 1 0 1 0 2 0 0 0 0 0 3 0 0 0 3 0 0 18 0 1726.9326 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 277 294 NUP155 Nuclear pore complex protein Nup155 yes no 2 1.7128E-16 118.37 2 2 1.3777 1.294 24.456 4 Median 1.4817 1.5774 2.5956 2 0 Median 1.2382 1.0377 5.8031 2 0 Median 62143000 29826000 32317000 53361000 25390000 27971000 8782100 4435400 4346700 13710 39 14086 36298;36299;36300;36301 56901;56902;56903;56904;56905;56906;56907;56908;56909;56910 56902 10 VASYSGTVTQATFTR VPSEEEIVQPLDSTRVASYSGTVTQATFTR VASYSGTVTQATFTRTYDGPGSQPVICQSS R V A T R T 2 1 0 0 0 1 0 1 0 0 0 0 0 1 0 2 4 0 1 2 0 0 15 0 1587.7893 Q5VWN6 Q5VWN6 965 979 FAM208B Protein FAM208B yes yes 2 3.7257E-05 85.522 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3698900 0 3698900 3698900 0 3698900 0 0 0 13711 1833 14087 36302 56911 56911 1 VATLNSEEESDPPTYK SFAEHRSGLVPQQIKVATLNSEEESDPPTY ATLNSEEESDPPTYKDAFPPLPEKAACLES K V A Y K D 1 0 1 1 0 0 3 0 0 0 1 1 0 0 2 2 2 0 1 1 0 0 16 0 1778.821 A0A024R4E5;Q00341;B2R5V9;C9J5E5;C9JIZ1;C9JZI8;C9JHS7;C9JHZ8;C9JES8;C9JT62;C9JK79;C9JMQ6;C9JQ82;C9JBS3;C9JEJ8;C9JHN6 A0A024R4E5 26 41 HDLBP Vigilin yes no 2 0.00015297 75.088 2 1.8547 1.878 25.594 2 Median 1.8547 1.878 25.594 2 0 Median NaN NaN NaN 0 0 Median 33180000 8869500 24310000 33180000 8869500 24310000 0 0 0 13712 154 14088 36303;36304 56912;56913;56914 56913 3 VATPEVVSK TGSIRPRAIGGSKPRVATPEVVSKIAQYKR GGSKPRVATPEVVSKIAQYKRECPSIFAWE R V A S K I 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 1 0 0 3 0 0 9 0 928.52295 D1KF47;Q66SS1;B3KQG1;F1T0F8;D3DQZ8;P26367;Q59GD2;Q2XU31;Q7Z5Y4;Q56H36 D1KF47 78 86 PAX6 Paired box protein Pax-6 yes no 2 0.046803 47.603 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13713 927 14089 36305 56915 56915 1 VATTSVITIVK TFARTVARGPVAPSKVATTSVITIVKSTEL APSKVATTSVITIVKSTELSSTSVPFSAAS K V A V K S 1 0 0 0 0 0 0 0 0 2 0 1 0 0 0 1 3 0 0 3 0 0 11 0 1130.6911 A0A024R804;A8WFP5;O60675 A0A024R804 131 141 MAFK Transcription factor MafK yes no 2 0.00041914 79.974 2 2 1.8159 1.7288 10.424 4 Median 1.4165 1.5897 0.53954 2 0 Median 2.3321 1.9016 2.1424 2 0 Median 207710000 85008000 122700000 173840000 74633000 99203000 33869000 10375000 23495000 13714 239 14090 36306;36307;36308;36309 56916;56917;56918;56919;56920;56921 56916 6 VATVSLPR IMLIKLSSPATLNSRVATVSLPRSCAAAGT PATLNSRVATVSLPRSCAAAGTECLISGWG R V A P R S 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 2 0 0 8 0 841.50215 CON__P00761 CON__P00761 108 115 yes yes 2 0.00424 91.626 2 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 155150000 155150000 0 155150000 155150000 0 0 0 0 + 13715 1148 14091 36310;36311;36312;36313;36314;36315 56922;56923;56924;56925;56926;56927 56923 6 VATWFNQPAR GMVLKPHFHKDWQRRVATWFNQPARKIRRR DWQRRVATWFNQPARKIRRRKARQAKARRI R V A A R K 2 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 10 0 1188.604 Q6NZ55;A8K4C8;P26373;J3QSB4;H3BTH3;B4DGL7 Q6NZ55 22 31 RPL13 60S ribosomal protein L13 yes no 2 1.8059E-09 130.27 2 0.90308 0.7811 1.9434 2 Median NaN NaN NaN 0 0 Median 0.90308 0.7811 1.9434 2 0 Median 83562000 47042000 36520000 0 0 0 83562000 47042000 36520000 13716 733 14092 36316;36317 56928;56929 56928 2 VATWFNQPARK GMVLKPHFHKDWQRRVATWFNQPARKIRRR WQRRVATWFNQPARKIRRRKARQAKARRIA R V A R K I 2 1 1 0 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 11 1 1316.699 Q6NZ55;A8K4C8;P26373;J3QSB4;H3BTH3;B4DGL7 Q6NZ55 22 32 RPL13 60S ribosomal protein L13 yes no 3 0.021439 25.437 1 0.85956 0.72207 NaN 1 Median NaN NaN NaN 0 0 Median 0.85956 0.72207 NaN 1 0 Median 4755900 2466900 2289100 0 0 0 4755900 2466900 2289100 13717 733 14093 36318 56930 56930 1 VAVEEVDEEGK ESRSSFSQHARTSGRVAVEEVDEEGKFVRL TSGRVAVEEVDEEGKFVRLRNKSNEDQSMG R V A G K F 1 0 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 0 3 0 0 11 0 1202.5667 P02545;W8QEH3;Q5I6Y5;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 440 450 LMNA Prelamin-A/C;Lamin-A/C yes no 2 2.3069E-12 140.45 2 2 1.3313 1.5268 16.524 4 Linear 1.3015 1.4838 2.2482 2 0 Median 1.3811 1.1184 3.8346 2 0 Median 386090000 161120000 224970000 333610000 140500000 193120000 52477000 20619000 31858000 13718 1440 14094 36319;36320;36321;36322 56931;56932;56933;56934;56935;56936;56937;56938 56931 8 VAVEYLDPSPEVQK FPNKQGYVLSSIEGRVAVEYLDPSPEVQKK RVAVEYLDPSPEVQKKKYAFKCHRLKENNI R V A Q K K 1 0 0 1 0 1 2 0 0 0 1 1 0 0 2 1 0 0 1 3 0 0 14 0 1572.8035 J3QT28;A0A140VJF3;O43684;B4DDM6 J3QT28 203 216 BUB3 Mitotic checkpoint protein BUB3 yes no 2 3.2513E-06 103.08 1 2 1.0135 0.84655 16.95 3 Median 0.99873 1.1255 NaN 1 0 Median 1.0358 0.83947 1.1878 2 0 Median 86542000 41451000 45091000 68215000 33049000 35166000 18327000 8402500 9924600 13719 600 14095 36323;36324;36325 56939;56940;56941;56942;56943;56944 56940 6 VAVFFGGLSIK SKEYERFSKYMPNVKVAVFFGGLSIKKDEE PNVKVAVFFGGLSIKKDEEVLKKNCPHIVV K V A I K K 1 0 0 0 0 0 0 2 0 1 1 1 0 2 0 1 0 0 0 2 0 0 11 0 1136.6594 A0A024RCM3;Q13838;A0A0G2JJZ9;Q5STU3;F6WLT2;B4DP52;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;B4DIJ6;F6UJC5;A0A140TA18;F6QYI9;A0A0G2JJL7;F6R6M7;B4DIZ8;A0A140T9K2;A0A140T9N3 A0A024RCM3 145 155 hCG_2005638;DDX39B Spliceosome RNA helicase DDX39B yes no 2 0.00041003 80.688 2 2 1.4405 1.3023 69.226 4 Median 2.3146 2.3861 3.8632 2 0 Median 0.88614 0.71995 2.0535 2 0 Median 37048000 13732000 23316000 31677000 11045000 20632000 5370900 2686900 2684000 13720 362 14096 36326;36327;36328;36329 56945;56946;56947;56948;56949;56950;56951 56946 7 VAVGELTDEDVK ATVILANHVAKKDNKVAVGELTDEDVKMIT DNKVAVGELTDEDVKMITSLSKDQQIGEKI K V A V K M 1 0 0 2 0 0 2 1 0 0 1 1 0 0 0 0 1 0 0 3 0 0 12 0 1273.6402 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6 B4DSV5 321 332 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 8.9303E-05 90.827 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10041000 8401800 1638900 10041000 8401800 1638900 0 0 0 13721 955 14097 36330;36331;36332 56952;56953;56954 56954 3 VAVLENQNK CRRKKKEYVKCLENRVAVLENQNKTLIEEL KCLENRVAVLENQNKTLIEELKALKDLYCH R V A N K T 1 0 2 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 1013.5506 Q53X93;Q5U0J5;P16220;Q53RU9;E9PAR2;Q59FC7;G5E998;B2R8K4;F1JVV6;F1JVV5;P18846 Q53X93 301 309 CREB1;CREM;EWSR1/ATF1 fusion;ATF1 Cyclic AMP-responsive element-binding protein 1;Cyclic AMP-dependent transcription factor ATF-1 yes no 2 0.00068897 95.741 2 0.63202 0.68015 NaN 1 Median 0.63202 0.68015 NaN 1 0 Median NaN NaN NaN 0 0 Median 28192000 13709000 14483000 28192000 13709000 14483000 0 0 0 13722 1488 14098 36333;36334 56955;56956;56957 56956 3 VAVLGASGGIGQPLSLLLK ______________________________ GASGGIGQPLSLLLKNSPLVSRLTLYDIAH K V A L K N 2 0 0 0 0 1 0 4 0 1 5 1 0 0 1 2 0 0 0 2 0 0 19 0 1792.0822 Q0QF37;Q75MT9;Q6FHZ0;A0A024R4K3;P40926 Q0QF37 6 24 MDH2 Malate dehydrogenase;Malate dehydrogenase, mitochondrial yes no 2 1.2371E-05 70.622 2 3.0587 3.0878 NaN 1 Median 3.0587 3.0878 NaN 1 0 Median NaN NaN NaN 0 0 Median 13382000 2280200 11102000 13382000 2280200 11102000 0 0 0 13723 156 14099 36335;36336 56958;56959 56959 2 VAVLISGTGSNLQALIDSTR GSLTNHFSFEKKKARVAVLISGTGSNLQAL SGTGSNLQALIDSTREPNSSAQIDIVISNK R V A T R E 2 1 1 1 0 1 0 2 0 2 3 0 0 0 0 3 2 0 0 2 0 0 20 0 2014.1059 Q3B7A7;Q59HH3;P22102;B4DJ93;A0A140TA71 Q3B7A7 810 829 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.00084655 63.709 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3289800 3289800 0 3289800 3289800 0 0 0 0 13724 1507 14100 36337 56960 56960 1 VAVLQALASTVNR GIEEVVIPKKKTWDKVAVLQALASTVNRDT DKVAVLQALASTVNRDTTAVPYVFQDDPYL K V A N R D 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 13 0 1340.7776 Q96EY7;B8ZZQ4;B4DF73 Q96EY7 68 80 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes no 2 0.045821 49.5 1 1.5345 1.3262 NaN 1 Median NaN NaN NaN 0 0 Median 1.5345 1.3262 NaN 1 0 Median 1639100 762180 876870 0 0 0 1639100 762180 876870 13725 1963 14101 36338 56961 56961 0 VAVPLLSSGGQVAVLELR TTPGESDGFCANKLRVAVPLLSSGGQVAVL PLLSSGGQVAVLELRKPGRLPDTALPTLQN R V A L R K 2 1 0 0 0 1 1 2 0 0 4 0 0 0 1 2 0 0 0 4 0 0 18 0 1807.0567 B3KSY4;B4DKU9;A0A0A6YYL4;P57737;B3KUH7 B3KSY4 291 308 hCG_1787779;CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 2 5.9376E-05 63.185 3 1.6986 1.7667 15.742 2 Median 1.6986 1.7667 15.742 2 0 Median NaN NaN NaN 0 0 Median 9073400 3066300 6007200 9073400 3066300 6007200 0 0 0 13726 495 14102 36339;36340;36341 56962;56963;56964;56965 56963 4 VAVQGDVVR NNCTTSEDSLVLYNRVAVQGDVVRELKAKK LVLYNRVAVQGDVVRELKAKKAPKEDVDAA R V A V R E 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 4 0 0 9 0 941.52943 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 757 765 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0024816 84.498 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13727 1454 14103 36342 56966 56966 1 VAVTPPGLAR SATYVNTEGRAQQTKVAVTPPGLAREDWKI AQQTKVAVTPPGLAREDWKIIRALSEIAGM K V A A R E 2 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 1 0 0 2 0 0 10 0 979.58147 B4DJ81;E5KRK5;P28331;Q9P1A0 B4DJ81 492 501 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.0099174 63.419 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7134400 0 7134400 7134400 0 7134400 0 0 0 13728 986 14104 36343 56967 56967 1 VAVTSSSSSSSSSSSIPSAEK RKVEPPTPQEPGPAKVAVTSSSSSSSSSSS SSSSSSSSSIPSAEKVPTTKSTLWQEEMRT K V A E K V 2 0 0 0 0 0 1 0 0 1 0 1 0 0 1 12 1 0 0 2 0 0 21 0 1970.928 J3KSW8;U6FSN9;Q6WCQ1 J3KSW8 19 39 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.0006432 43.592 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3529200 0 3529200 3529200 0 3529200 0 0 0 13729 1330 14105 36344 56968 56968 1 VAVVAGYGDVGK IDGIKRATDVMIAGKVAVVAGYGDVGKGCA AGKVAVVAGYGDVGKGCAQALRGFGARVII K V A G K G 2 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 1 4 0 0 12 0 1133.6081 P23526;Q1RMG2 P23526 215 226 AHCY Adenosylhomocysteinase yes no 2 0.00026837 78.655 2 1.3311 1.3847 5.2056 2 Median 1.3311 1.3847 5.2056 2 0 Median NaN NaN NaN 0 0 Median 41081000 15580000 25500000 41081000 15580000 25500000 0 0 0 13730 1512 14106 36345;36346 56969;56970;56971;56972 56969 4 VAVVNQIAR RFESLEPEMNNQASRVAVVNQIARQLMHSG NNQASRVAVVNQIARQLMHSGHPSEKEIKA R V A A R Q 2 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 9 0 968.57671 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 819 827 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0027248 82.305 2 1.1616 1.2702 NaN 1 Median 1.1616 1.2702 NaN 1 0 Median NaN NaN NaN 0 0 Median 35170000 16279000 18891000 35170000 16279000 18891000 0 0 0 13731 415 14107 36347;36348 56973;56974;56975 56973 3 VAYIPDEMAAQQNPLQQPR LDKLNGFQLENFTLKVAYIPDEMAAQQNPL PDEMAAQQNPLQQPRGRRGLGQRGSSRQGS K V A P R G 3 1 1 1 0 4 1 0 0 1 1 0 1 0 3 0 0 0 1 1 0 0 19 0 2168.0684 O00425 O00425 151 169 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 5.0952E-10 85.813 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18861000 0 18861000 18861000 0 18861000 0 0 0 13732 1364 14108 36349;36350 56976;56977;56978 56976 1030 3 VAYPQADSNLR GIRTVIIRQHEIVLKVAYPQADSNLRNIVT IVLKVAYPQADSNLRNIVTEQLVALIDCFL K V A L R N 2 1 1 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 11 0 1232.6149 B4E206;Q8WUM0;A0A024R3R6;B4E3T7 B4E206 772 782 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.0063276 63.397 2 1.536 1.5532 19.466 2 Median 1.536 1.5532 19.466 2 0 Median NaN NaN NaN 0 0 Median 33087000 13382000 19705000 33087000 13382000 19705000 0 0 0 13733 1070 14109 36351;36352 56979;56980 56979 2 VAYVQLAHGQTFTFPDLFPEK RRDHRNVRIKKPDYKVAYVQLAHGQTFTFP AHGQTFTFPDLFPEKDESPEGSAADDLYSM K V A E K D 2 0 0 1 0 2 1 1 1 0 2 1 0 3 2 0 2 0 1 2 0 0 21 0 2407.2212 A0A024RCB2;Q16540 A0A024RCB2 94 114 MRPL23 39S ribosomal protein L23, mitochondrial yes no 3 2.8253E-07 54.658 1 1.2668 1.2657 NaN 1 Median 1.2668 1.2657 NaN 1 0 Median NaN NaN NaN 0 0 Median 14133000 5869500 8263500 14133000 5869500 8263500 0 0 0 13734 357 14110 36353 56981;56982 56981 2 VAYVSFGPHAGK ______________________________ VGRVAYVSFGPHAGKLVAIVDVIDQNRALV R V A G K L 2 0 0 0 0 0 0 2 1 0 0 1 0 1 1 1 0 0 1 2 0 0 12 0 1231.635 E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914 E7EPB3 12 23 RPL14 60S ribosomal protein L14 yes no 2;3 3.1705E-18 147.2 4 4 0.95727 1.2315 18.326 8 Linear 0.94366 1.1201 4.0252 4 0 Median 0.96458 0.81318 4.1524 4 0 Median 3924200000 2005100000 1919000000 3705300000 1898300000 1807000000 218880000 106850000 112030000 13735 645 14111 36354;36355;36356;36357;36358;36359;36360;36361 56983;56984;56985;56986;56987;56988;56989;56990;56991;56992;56993;56994;56995;56996 56990 14 VCACHLCGGR PSCKHCKDDVNRLCRVCACHLCGGRQDPDK NRLCRVCACHLCGGRQDPDKQLMCDECDMA R V C G R Q 1 1 0 0 3 0 0 2 1 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1188.4951 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 328 337 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2;3 0.0026805 67.981 2 2 0.71474 0.66781 21.55 4 Median 0.56642 0.56628 2.5527 2 0 Median 0.93651 0.81553 7.4928 2 0 Median 17834000 10953000 6881100 14002000 9061000 4940900 3832500 1892300 1940200 13736 406 14112 36362;36363;36364;36365 56997;56998;56999;57000;57001;57002 56998 6 VCEEIAIIPSK KYYTRLGNDFHTNKRVCEEIAIIPSKKLRN TNKRVCEEIAIIPSKKLRNKIAGYVTHLMK R V C S K K 1 0 0 0 1 0 2 0 0 3 0 1 0 0 1 1 0 0 0 1 0 0 11 0 1257.6639 H0YN88;A0A075B716;P08708;H0YN73 H0YN88 34 44 RPS17 40S ribosomal protein S17 yes no 2 1.6204E-05 106.4 2 1 0.97345 1.0325 29.345 3 Plateau 0.97345 1.0118 18.944 2 0 Median 0.76844 0.64369 NaN 1 0 Median 55729000 31198000 24530000 53872000 30030000 23842000 1856300 1168000 688360 13737 396 14113 36366;36367;36368 57003;57004;57005;57006 57003 4 VCENIPIVLCGNK VTYKNVPNWHRDLVRVCENIPIVLCGNKVD VRVCENIPIVLCGNKVDIKDRKVKAKSIVF R V C N K V 0 0 2 0 2 0 1 1 0 2 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1514.7585 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 128 140 RAN GTP-binding nuclear protein Ran yes no 2 5.4717E-05 96.342 2 2.4728 2.6973 2.8308 2 Median 2.4728 2.6973 2.8308 2 0 Median NaN NaN NaN 0 0 Median 81448000 28240000 53208000 81448000 28240000 53208000 0 0 0 13738 1082 14114 36369;36370 57007;57008 57008 1 VCFVGDGFTR TGKRKKKAWKRMVTKVCFVGDGFTRKPPKY RMVTKVCFVGDGFTRKPPKYERFIRPMGLR K V C T R K 0 1 0 1 1 0 0 2 0 0 0 0 0 2 0 0 1 0 0 2 0 0 10 0 1156.5335 Q5J7U2;O95478;A0A0A0MQZ6;H0YAI9 Q5J7U2 153 162 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 0.0029629 66.692 2 2 1.1378 1.0247 8.9009 4 Median 1.0447 1.1049 11.089 2 0 Median 1.1843 0.99996 3.8992 2 0 Median 63645000 31689000 31956000 48211000 25254000 22957000 15433000 6435100 8998200 13739 1427 14115 36371;36372;36373;36374 57009;57010;57011;57012 57009 4 VCLLINK LLKSHEANSNAVRFRVCLLINKLLGSMPEN NSNAVRFRVCLLINKLLGSMPENAQIDDDV R V C N K L 0 0 1 0 1 0 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 858.49971 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 118 124 NCAPG Condensin complex subunit 3 yes no 2 0.016852 97.64 2 1 0.94646 1.0466 15.454 3 Median 0.92863 1.0143 4.4237 2 0 Median 1.6625 1.3183 NaN 1 0 Median 97110000 48162000 48948000 86849000 44582000 42267000 10260000 3579700 6680500 13740 1995 14116 36375;36376;36377 57013;57014;57015;57016 57015 4 VCNFLASQVPFPSR PGLFGTPLLTSLPEKVCNFLASQVPFPSRL KVCNFLASQVPFPSRLGDPAEYAHLVQAII K V C S R L 1 1 1 0 1 1 0 0 0 0 1 0 0 2 2 2 0 0 0 2 0 0 14 0 1620.8082 A0A0S2Z410;Q99714 A0A0S2Z410 213 226 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 2.276E-42 164.48 2 2 1.3866 1.5186 19.484 3 Plateau 1.3866 1.5186 NaN 1 0 Median 1.3102 1.0882 4.3587 2 0 Median 67001000 19933000 47068000 47589000 12065000 35524000 19412000 7867500 11544000 13741 555 14117 36378;36379;36380;36381 57017;57018;57019;57020;57021;57022 57017 6 VCNNPGLYSNPDLSAAASLALGK DGKQTLAAFVPLLLKVCNNPGLYSNPDLSA SNPDLSAAASLALGKFCMISATFCDSQLRL K V C G K F 4 0 3 1 1 0 0 2 0 0 4 1 0 0 2 3 0 0 1 1 0 0 23 0 2331.1529 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 1021 1043 NCAPD2 Condensin complex subunit 1 yes no 2 8.7963E-38 143.14 2 2 1.1389 1.043 28.252 4 Median 0.80209 0.79789 9.7539 2 0 Median 1.5686 1.2884 1.7545 2 0 Median 115130000 52278000 62849000 50124000 28090000 22034000 65003000 24188000 40815000 13742 908 14118 36382;36383;36384;36385 57023;57024;57025;57026;57027;57028;57029 57028 7 VCNPIITK AEKEEFEHQQKELEKVCNPIITKLYQSAGG QQKELEKVCNPIITKLYQSAGGMPGGMPGG K V C T K L 0 0 1 0 1 0 0 0 0 2 0 1 0 0 1 0 1 0 0 1 0 0 8 0 943.51609 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96H53;E9PS65;Q96BE0;Q9NZ87;Q9NWW3 V9HW22 602 609 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.013467 65.246 1 1 1.4578 1.3817 14.452 2 Median 1.366 1.5303 NaN 1 0 Median 1.5557 1.2474 NaN 1 0 Median 119850000 54218000 65634000 111580000 50735000 60847000 8270600 3483200 4787400 13743 1467 14119 36386;36387 57030;57031;57032 57030 3 VCNVAPIAGETK NVGKSSVINTLRSKKVCNVAPIAGETKVWQ SKKVCNVAPIAGETKVWQYITLMRRIFLID K V C T K V 2 0 1 0 1 0 1 1 0 1 0 1 0 0 1 0 1 0 0 2 0 0 12 0 1257.6387 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 335 346 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.00018473 90.827 2 1 1.0213 0.89262 1.9995 2 Median 0.92123 0.90533 NaN 1 0 Median 1.1322 0.88009 NaN 1 0 Median 38289000 12953000 25336000 34883000 11285000 23598000 3406200 1668300 1737900 13744 1721 14120 36388;36389;36390 57033;57034;57035;57036;57037;57038 57033 6 VCNYGLTFTQK TDTGKASGNLETKYKVCNYGLTFTQKWNTD TKYKVCNYGLTFTQKWNTDNTLGTEISWEN K V C Q K W 0 0 1 0 1 1 0 1 0 0 1 1 0 1 0 0 2 0 1 1 0 0 11 0 1329.6387 Q9Y277;E5RJN6;E5RHZ6;E5RHE1;E5RK27;E5RFP6 Q9Y277 64 74 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2 0.0029093 70.056 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34135000 34135000 0 34135000 34135000 0 0 0 0 13745 2124 14121 36391 57039 57039 1 VCTLAIIDPGDSDIIR GNNIELGTACGKYYRVCTLAIIDPGDSDII CTLAIIDPGDSDIIRSMPEQTGE_______ R V C I R S 1 1 0 3 1 0 0 1 0 4 1 0 0 0 1 1 1 0 0 1 0 0 16 0 1756.9029 E5RI99;A0A024R9D3;P62888;A0A0B4J213;A0A0C4DH44 E5RI99 91 106 RPL30 60S ribosomal protein L30 yes no 2 6.8215E-13 123.95 2 2 0.80927 0.80558 16.846 4 Median 0.80352 0.94088 3.504 2 0 Median 0.80967 0.7043 0.54921 2 0 Median 954770000 542630000 412140000 598420000 344130000 254290000 356350000 198500000 157850000 13746 276 14122 36392;36393;36394;36395 57040;57041;57042;57043;57044;57045;57046;57047;57048 57041 9 VDALMDEINFMK DVDAAYMNKVELEAKVDALMDEINFMKMFF EAKVDALMDEINFMKMFFDAELSQMQTHVS K V D M K M 1 0 1 2 0 0 1 0 0 1 1 1 2 1 0 0 0 0 0 1 0 0 12 0 1424.668 CON__P13647;P13647;B4E1T1;B4DL32;H0YIN9 CON__P13647 293 304 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.00034794 73.499 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20345000 20345000 0 20345000 20345000 0 0 0 0 + 13747 1162 14123 36396;36397 57049;57050 57049 875;876 2 VDALNDEINFLR DVDAAYMSKVELEAKVDALNDEINFLRTLN EAKVDALNDEINFLRTLNETELTELQSQIS K V D L R T 1 1 2 2 0 0 1 0 0 1 2 0 0 1 0 0 0 0 0 1 0 0 12 0 1417.7201 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 215 226 KRT7 Keratin, type II cytoskeletal 7 no no 2 2.978E-23 163.94 2 1 0.9218 1.0705 4.3302 2 Median 0.9218 1.0705 4.3302 2 0 Median NaN NaN NaN 0 0 Median 421920000 205540000 216380000 400400000 205540000 194870000 21515000 0 21515000 + 13748 1171;1158 14124 36398;36399;36400 57051;57052;57053;57054;57055 57052 5 VDATEESDLAQQYGVR AGKLKAEGSEIRLAKVDATEESDLAQQYGV DATEESDLAQQYGVRGYPTIKFFRNGDTAS K V D V R G 2 1 0 2 0 2 2 1 0 0 1 0 0 0 0 1 1 0 1 2 0 0 16 0 1779.8275 I3NI03;I3L3U6;B4DNP9;B4DJS0;B4DLN6;B4DUA5;H7BZ94;B4DNL5;A0A024R8S5;P07237 I3NI03 82 97 P4HB Protein disulfide-isomerase yes no 2 8.4876E-12 109.24 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13749 257 14125 36401 57056 57056 1 VDAVHADVYR AAGTLDASTKIYAVRVDAVHADVYRVLGGL IYAVRVDAVHADVYRVLGGLGKDAPSLEEV R V D Y R V 2 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 3 0 0 10 0 1143.5673 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470 A8K4T8 169 178 NCAPH Condensin complex subunit 2 yes no 2;3 1.5101E-07 106.18 3 2 1.2098 1.1569 25.138 4 Median 0.826 0.93162 0.44646 2 0 Median 1.7636 1.4398 0.76406 2 0 Median 282480000 166730000 115750000 254810000 155880000 98922000 27678000 10851000 16827000 13750 740 14126 36402;36403;36404;36405;36406 57057;57058;57059;57060;57061;57062;57063;57064;57065;57066 57060 10 VDDDALLVFWDAR DINCNDHIICAGTEKVDDDALLVFWDARMN EKVDDDALLVFWDARMNSQNLSTTKDSLGA K V D A R M 2 1 0 4 0 0 0 0 0 0 2 0 0 1 0 0 0 1 0 2 0 0 13 0 1533.7464 A0A024R667;Q96FK6;G3V4B8 A0A024R667 137 149 C14orf150;WDR89 WD repeat-containing protein 89 yes no 2 0.021825 46.352 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13751 198 14127 36407 57067 57067 1 VDDDSLGEFPVTNSR LRTDPLEKRGAPDPRVDDDSLGEFPVTNSR VDDDSLGEFPVTNSRARKRILEPDDFLDDL R V D S R A 0 1 1 3 0 0 1 1 0 0 1 0 0 1 1 2 1 0 0 2 0 0 15 0 1649.7533 A0A024R582;J3KMZ8;Q92785 A0A024R582 138 152 DPF2 Zinc finger protein ubi-d4 yes no 2 0.00021022 75.819 2 1.0215 1.0508 16.127 2 Median 1.0215 1.0508 16.127 2 0 Median NaN NaN NaN 0 0 Median 22480000 11995000 10485000 22480000 11995000 10485000 0 0 0 13752 174 14128 36408;36409 57068;57069;57070;57071;57072 57071 5 VDDLLIIEEK YVQRLAETVFNFQEKVDDLLIIEEKIDLEV NFQEKVDDLLIIEEKIDLEVRSLETCMYDH K V D E K I 0 0 0 2 0 0 2 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1185.6493 Q14204 Q14204 847 856 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.044119 45.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13753 1729 14129 36410 57073 57073 1 VDEAIALFQK ADEAKLQQTEAELRKVDEAIALFQKML___ AELRKVDEAIALFQKML_____________ K V D Q K M 2 0 0 1 0 1 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1132.6128 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 1253 1262 VARS Valine--tRNA ligase yes no 2 0.025757 51.949 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13754 363 14130 36411 57074 57074 1 VDEAVAVLQAHQAK ELLHMLESPESLRSKVDEAVAVLQAHQAKE KVDEAVAVLQAHQAKEAAQKAVNSATGVPT K V D A K E 4 0 0 1 0 2 1 0 1 0 1 1 0 0 0 0 0 0 0 3 0 0 14 0 1477.7889 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;Q5VX58;Q3ZCS4;Q9H361;Q2VIP3;H0YAS7;H0YAS6;H0YB75;H0YC10;L0R533 A0A087WTT1 493 506 PABPC1;PABPC3;RLIM Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.00017076 78.655 4 2.4522 2.5476 NaN 1 Median 2.4522 2.5476 NaN 1 0 Median NaN NaN NaN 0 0 Median 12479000 4292700 8186100 12479000 4292700 8186100 0 0 0 13755 273 14131 36412;36413;36414;36415 57075;57076;57077;57078;57079;57080 57077 6 VDEFPLCGHMVSDEYEQLSSEALEAAR DAKIRIFDLGRKKAKVDEFPLCGHMVSDEY DEYEQLSSEALEAARICANKYMVKSCGKDG K V D A R I 3 1 0 2 1 1 5 1 1 0 3 0 1 1 1 3 0 0 1 2 0 0 27 0 3081.3696 X1WI28;X5D2T3;P27635;B8A6G2;X5D2W5;A6QRI9 X1WI28 43 69 RPL10 60S ribosomal protein L10 yes no 3 1.7906E-66 151.47 2 4 1.1232 1.0018 33.344 6 Median 1.148 1.336 0.31065 2 0 Median 0.90586 0.78484 26.212 4 0 Median 874890000 435320000 439570000 438120000 208990000 229140000 436770000 226330000 210430000 13756 1524 14132;14133 36416;36417;36418;36419;36420;36421 57081;57082;57083;57084;57085;57086;57087;57088;57089;57090 57089 1288 10 VDEFVTHNLSFDEINK SVPKLVSEYMSKKIKVDEFVTHNLSFDEIN DEFVTHNLSFDEINKAFELMHSGKSIRTVV K V D N K A 0 0 2 2 0 0 2 0 1 1 1 1 0 2 0 1 1 0 0 2 0 0 16 0 1905.9109 Q6IRT1;Q6FI45;P11766;Q5U043 Q6IRT1 342 357 ADH5 S-(hydroxymethyl)glutathione dehydrogenase;Alcohol dehydrogenase class-3 yes no 3 0.0042877 47.223 4 3.393 3.3869 NaN 1 Median 3.393 3.3869 NaN 1 0 Median NaN NaN NaN 0 0 Median 41673000 4171400 37502000 41673000 4171400 37502000 0 0 0 13757 1472 14134 36422;36423;36424;36425 57091;57092;57093;57094 57091 3 VDEIFGQLR FNAPVYLENKEQIGKVDEIFGQLRDFYFSV KEQIGKVDEIFGQLRDFYFSVKLSENMKAS K V D L R D 0 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1075.5662 A0A024RDJ3;Q9NY12 A0A024RDJ3 113 121 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2 0.00049492 98.458 2 2 0.80789 0.94048 48.271 4 Linear 0.80266 0.93037 0.85596 2 0 Median 0.49631 0.40354 3.504 2 0 Median 433640000 242620000 191020000 409780000 226690000 183090000 23863000 15929000 7933800 13758 387 14135 36426;36427;36428;36429 57095;57096;57097;57098;57099;57100;57101;57102 57098 8 VDENFDCVEADDVEGK AGSLSTMFRVEYASKVDENFDCVEADDVEG DENFDCVEADDVEGKIRQIIPPGFCTNTND K V D G K I 1 0 1 4 1 0 3 1 0 0 0 1 0 1 0 0 0 0 0 3 0 0 16 0 1839.7469 O14929 O14929 95 110 HAT1 Histone acetyltransferase type B catalytic subunit yes yes 2 7.9959E-05 77.078 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9223500 0 9223500 9223500 0 9223500 0 0 0 13759 1368 14136 36430;36431 57103;57104 57104 2 VDENGPELLPR VQAQLRASPNTPPGRVDENGPELLPRVAML PPGRVDENGPELLPRVAMLRLLTWVIGTGS R V D P R V 0 1 1 1 0 0 2 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 11 0 1237.6303 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1027 1037 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.017926 53.751 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 738870 0 738870 0 0 0 738870 0 738870 13760 1205 14137 36432 57105 57105 1 VDEVGGEALGR AEEKAAVTSLFAKVKVDEVGGEALGRLLVV AKVKVDEVGGEALGRLLVVYPWTQRFFESF K V D G R L 1 1 0 1 0 0 2 3 0 0 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1100.5462 CON__Q3SX09;CON__P02070 CON__Q3SX09 75 85 yes no 2 0.00069851 88.681 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 213790000 213790000 0 213790000 213790000 0 0 0 0 + 13761 1172 14138 36433 57106 57106 1 VDEVPDGAVKPPTNK LIFAKMKGYPHWPARVDEVPDGAVKPPTNK VDEVPDGAVKPPTNKLPIFFFGTHETAFLG R V D N K L 1 0 1 2 0 0 1 1 0 0 0 2 0 0 3 0 1 0 0 3 0 0 15 1 1564.8097 O75475;Q05CM9;Q8N4N4 O75475 25 39 PSIP1 PC4 and SFRS1-interacting protein no no 2;3 0.00010183 61.732 5 3 0.7066 0.83421 15.542 7 Median 0.6814 0.79685 3.3457 4 0 Median 1.2504 1.0661 1.8097 3 0 Median 500510000 291350000 209160000 441240000 264050000 177190000 59277000 27305000 31972000 13762 1405;1908 14139 36434;36435;36436;36437;36438;36439;36440;36441 57107;57108;57109;57110;57111;57112;57113;57114;57115;57116;57117;57118 57111 12 VDFADTEHR HMRGFPLGGPDRRLRVDFADTEHRYQQQYL PDRRLRVDFADTEHRYQQQYLQPLPLTHYE R V D H R Y 1 1 0 2 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 9 0 1088.4887 A0A087WWP4;Q96T37 A0A087WWP4 480 488 RBM15 Putative RNA-binding protein 15 yes no 2 0.051287 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13763 427 14140 36442 57119 57119 1 VDFPTAIGMVVER SYTVRAGYAGEDCPKVDFPTAIGMVVERDD PKVDFPTAIGMVVERDDGSTLMEIDGDKGK K V D E R D 1 1 0 1 0 0 1 1 0 1 0 0 1 1 1 0 1 0 0 3 0 0 13 0 1432.7384 Q6FI97;Q53FS0;O96019;H7C5S0 Q6FI97 35 47 BAF53A;ACTL6A Actin-like protein 6A yes no 2 0.00012796 67.385 1 1.0962 1.2605 NaN 1 Median 1.0962 1.2605 NaN 1 0 Median NaN NaN NaN 0 0 Median 76219000 35280000 40939000 76219000 35280000 40939000 0 0 0 13764 1434 14141 36443 57120 57120 1132 1 VDFSITK KERANGMELDGRRIRVDFSITKRPHTPTPG ELDGRRIRVDFSITKRPHTPTPGIYMGRPT R V D T K R 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 1 0 0 7 0 808.43307 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995;H7C2L4;H7BXF3 Q8N1H4 155 161 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2 0.02738 73.616 2 1.1542 1.2966 NaN 1 Median 1.1542 1.2966 NaN 1 0 Median NaN NaN NaN 0 0 Median 154160000 56772000 97384000 154160000 56772000 97384000 0 0 0 13765 889 14142 36444;36445 57121;57122 57122 2 VDFSPQPPYNYAVTASSR YKTPVQIKEFGAVSKVDFSPQPPYNYAVTA SPQPPYNYAVTASSRIHIYGRYSQEPIKTF K V D S R I 2 1 1 1 0 1 0 0 0 0 0 0 0 1 3 3 1 0 2 2 0 0 18 0 1997.9483 Q8TED0;H0Y8P4;D6RF65 Q8TED0 44 61 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 2.4302E-22 131.35 2 2 0.94026 0.92829 15.362 4 Median 0.70957 0.7982 8.1752 2 0 Median 1.1973 1.0279 1.2372 2 0 Median 262130000 148070000 114060000 197760000 116600000 81165000 64372000 31475000 32897000 13766 1936 14143 36446;36447;36448;36449 57123;57124;57125;57126;57127;57128;57129;57130;57131;57132;57133;57134 57128 12 VDFTEEEINNMK FKLGLAPQIQDLYGKVDFTEEEINNMKTEL YGKVDFTEEEINNMKTELEKYGIQMPAFSK K V D M K T 0 0 2 1 0 0 3 0 0 1 0 1 1 1 0 0 1 0 0 1 0 0 12 0 1467.6552 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4;H0YKA5;Q5FWG8;Q05DN7 A4QPB0 175 186 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00025088 78.932 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13767 352 14144 36450 57135 57135 261 1 VDGAEWGVDLPSVEAQLGSHR YLQDLLAWVEENQHRVDGAEWGVDLPSVEA GVDLPSVEAQLGSHRGLHQSIEEFRAKIER R V D H R G 2 1 0 2 0 1 2 3 1 0 2 0 0 0 1 2 0 1 0 3 0 0 21 0 2221.0764 Q15149;E9PMV1 Q15149 676 696 PLEC Plectin yes no 3 6.6777E-09 71.535 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4014500 0 4014500 4014500 0 4014500 0 0 0 13768 1754 14145 36451 57136;57137 57136 2 VDIAPHVR KLEKLMPEIVATASKVDIAPHVRDGYIMMF IVATASKVDIAPHVRDGYIMMFNYLPITFG K V D V R D 1 1 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 2 0 0 8 0 905.5083 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1746 1753 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.032598 27.254 1 1.9211 2.0163 NaN 1 Median 1.9211 2.0163 NaN 1 0 Median NaN NaN NaN 0 0 Median 11104000 3483300 7621200 11104000 3483300 7621200 0 0 0 13769 1205 14146 36452 57138 57138 1 VDIETPNLEGTLTGPR QGDVKGPQVALKGSRVDIETPNLEGTLTGP DIETPNLEGTLTGPRLGSPSGKTGTCRISM R V D P R L 0 1 1 1 0 0 2 2 0 1 2 0 0 0 2 0 3 0 0 1 0 0 16 0 1710.8788 Q09666;B4DTV0 Q09666 541 556 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00011388 103.44 2 1.5602 1.5879 15.024 2 Median 1.5602 1.5879 15.024 2 0 Median NaN NaN NaN 0 0 Median 28329000 12007000 16322000 28329000 12007000 16322000 0 0 0 13770 1696 14147 36453;36454 57139;57140;57141;57142;57143 57140 5 VDIGDTIIYLVH DLMSKKIHLTENGIRVDIGDTIIYLVH___ GIRVDIGDTIIYLVH_______________ R V D V H - 0 0 0 2 0 0 0 1 1 3 1 0 0 0 0 0 1 0 1 2 0 0 12 0 1356.7289 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 1119 1130 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 2.717E-20 140.09 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43310000 0 0 43310000 0 0 0 0 0 13771 883 14148 36455;36456 57144;57145 57144 2 VDIIADAAYSIFQK MDMLGGPGIESQCRKVDIIADAAYSIFQKP KVDIIADAAYSIFQKPKSFTGNFVIDENIL K V D Q K P 3 0 0 2 0 1 0 0 0 3 0 1 0 1 0 1 0 0 1 1 0 0 14 0 1552.8137 B2R923;A0A024R159;Q6YN16;B4DWC7;B4E136 B2R923 148 161 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 0.00013888 78.653 1 2.972 3.029 NaN 1 Median 2.972 3.029 NaN 1 0 Median NaN NaN NaN 0 0 Median 10395000 1965400 8429500 10395000 1965400 8429500 0 0 0 13772 70 14149 36457 57146;57147 57146 2 VDILDAAVQTK PVICQSSVYGTLENKVDILDAAVQTKTGTL LENKVDILDAAVQTKTGTLQDLIQHGSPIN K V D T K T 2 0 0 2 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1171.6449 Q5VWN6 Q5VWN6 1003 1013 FAM208B Protein FAM208B yes yes 2 0.015839 55.401 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13773 1833 14150 36458 57148 57148 1 VDILDPALLR FQPNTQVKVIAATNRVDILDPALLRSGRLD AATNRVDILDPALLRSGRLDRKIEFPMPNE R V D L R S 1 1 0 2 0 0 0 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 10 0 1123.6601 E9PM69;R4GNH3;A0A140VK42;P17980;A8K781;E9PKD5 E9PM69 293 302 PSMC3 26S protease regulatory subunit 6A yes no 2 0.0035438 64.04 2 2.4088 2.5528 1.015 2 Median 2.4088 2.5528 1.015 2 0 Median NaN NaN NaN 0 0 Median 53880000 15099000 38782000 53880000 15099000 38782000 0 0 0 13774 617 14151 36459;36460 57149;57150;57151 57151 3 VDILYNNIK AHVNGFRFTSVRGDKVDILYNNIKHALFQP SVRGDKVDILYNNIKHALFQPCDGEMIIVL K V D I K H 0 0 2 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1090.6023 Q9Y5B9 Q9Y5B9 697 705 SUPT16H FACT complex subunit SPT16 yes yes 2 7.9139E-05 110.81 2 1 0.72236 0.83704 5.4547 3 Plateau 0.71059 0.82726 3.5304 2 0 Median 0.92695 0.7606 NaN 1 0 Median 603390000 360630000 242760000 566160000 340830000 225330000 37225000 19803000 17423000 13775 2148 14152 36461;36462;36463 57152;57153;57154;57155 57152 4 VDINTEDLEDGTCR AGYGGLSLSIEGPSKVDINTEDLEDGTCRV KVDINTEDLEDGTCRVTYCPTEPGNYIINI K V D C R V 0 1 1 3 1 0 2 1 0 1 1 0 0 0 0 0 2 0 0 1 0 0 14 0 1635.7046 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5C6;Q2VP91 P21333 2090 2103 FLNA;FLJ00119 Filamin-A yes no 2 0.010708 51.013 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13776 1504 14153 36464 57156 57156 1 VDIRPQLLK SLIRKYVSQYYPKLRVDIRPQLLKNALQRA YYPKLRVDIRPQLLKNALQRAVERGQLEQI R V D L K N 0 1 0 1 0 1 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 9 1 1080.6655 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 294 302 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.006966 87.308 1 0.74453 0.87422 NaN 1 Median 0.74453 0.87422 NaN 1 0 Median NaN NaN NaN 0 0 Median 60336000 34695000 25640000 60336000 34695000 25640000 0 0 0 13777 1817 14154 36465 57157 57157 1 VDLASETSSR LKRNGAQIADGFRIRVDLASETSSRDKRSV GFRIRVDLASETSSRDKRSVFVGNLPYKVE R V D S R D 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 3 1 0 0 1 0 0 10 0 1063.5146 P42696;A2A2V2 P42696 275 284 RBM34 RNA-binding protein 34 yes no 2 0.00018094 94.692 2 2 0.86757 0.82129 14.591 4 Median 0.88744 0.94172 6.9475 2 0 Median 0.84892 0.73947 2.4365 2 0 Median 79647000 39797000 39850000 75247000 37502000 37746000 4399500 2295400 2104100 13778 1566 14155 36466;36467;36468;36469 57158;57159;57160;57161;57162;57163;57164;57165 57160 8 VDLEELIECATGK ALKIQTSGEPDVAERVDLEELIECATGKME ERVDLEELIECATGKMELCARTDPSEQVEG R V D G K M 1 0 0 1 1 0 3 1 0 1 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1475.7178 B2RDX0;A8K7Z9;A0A024R6R1;Q8NEM2 B2RDX0 583 595 SHCBP1 SHC SH2 domain-binding protein 1 yes no 2 0.027768 43.897 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1478100 0 1478100 1478100 0 1478100 0 0 0 13779 207 14156 36470 57166 57166 1 VDLGGFAGLFDLK KIQPLAKATSRSGCKVDLGGFAGLFDLKAA CKVDLGGFAGLFDLKAAGFKDPLLASGTDG K V D L K A 1 0 0 2 0 0 0 3 0 0 3 1 0 2 0 0 0 0 0 1 0 0 13 0 1350.7184 Q3B7A7;Q59HH3;P22102;B4DJ93;O14660;Q71VH3 Q3B7A7 468 480 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 1.4601E-06 110.86 2 2.7973 2.9595 1.0614 2 Median 2.7973 2.9595 1.0614 2 0 Median NaN NaN NaN 0 0 Median 39740000 8754000 30986000 39740000 8754000 30986000 0 0 0 13780 1507 14157 36471;36472 57167;57168;57169;57170 57169 4 VDLGLPEK ______________________________ MITKTHKVDLGLPEKKKKKKVVKEPETRYS K V D E K K 0 0 0 1 0 0 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 8 0 869.48583 Q1ED39;H3BMC9 Q1ED39 8 15 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 0.043467 46.129 1 1.0296 1.059 NaN 1 Median 1.0296 1.059 NaN 1 0 Median NaN NaN NaN 0 0 Median 14520000 6859100 7661300 14520000 6859100 7661300 0 0 0 13781 1775 14158 36473 57171 57171 1 VDLILENTSK TKVQKKSLLLKKPLRVDLILENTSKVPAPK KKPLRVDLILENTSKVPAPKDVLAHQVPNA R V D S K V 0 0 1 1 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1130.6183 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4DVK1;B4E013;M0QX73 Q7L4X7 114 123 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.0028777 67.081 2 1 0.83272 0.87088 10.945 3 Median 0.78328 0.83049 14.985 2 0 Median 1.0982 0.87088 NaN 1 0 Median 79750000 46439000 33311000 75344000 43633000 31711000 4406700 2806300 1600400 13782 1068 14159 36474;36475;36476 57172;57173;57174;57175 57172 4 VDLLGEFQSALPK LTPAPSKKADSVAAKVDLLGEFQSALPKIN AKVDLLGEFQSALPKINSHPTRSQKKSSQK K V D P K I 1 0 0 1 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 13 0 1415.766 Q9H9L3 Q9H9L3 116 128 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 2 0.0053103 58.172 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5757200 0 5757200 0 0 0 5757200 0 5757200 13783 2046 14160 36477 57176 57176 1 VDLLNQEIEFLK DVDNAYMIKVELQSKVDLLNQEIEFLKVLY QSKVDLLNQEIEFLKVLYDAEISQIHQSVT K V D L K V 0 0 1 1 0 1 2 0 0 1 3 1 0 1 0 0 0 0 0 1 0 0 12 0 1459.7922 CON__P35908;P35908 CON__P35908 309 320 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 7.1824E-37 178.46 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 418590000 418590000 0 285270000 285270000 0 133330000 133330000 0 + 13784 1166 14161 36478;36479;36480;36481 57177;57178;57179;57180;57181 57181 5 VDLNEEETILIIR FEQWFNAPFAMTGEKVDLNEEETILIIRRL EKVDLNEEETILIIRRLHKVLRPFLLRRLK K V D I R R 0 1 1 1 0 0 3 0 0 3 2 0 0 0 0 0 1 0 0 1 0 0 13 0 1555.8457 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8;B3KNW7;A0A0U1RQE1;P51531;A0A0U1RQZ9;B4DK35;B4DSC8 A7E2E1 954 966 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 3.9386E-48 174.4 4 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46194000 46194000 0 42540000 42540000 0 3653600 3653600 0 13785 695;1595 14162 36482;36483;36484;36485;36486;36487;36488 57182;57183;57184;57185;57186;57187;57188 57184 7 VDLQSLPTR VENEKINAEKSSKQKVDLQSLPTRAYLDQT KSSKQKVDLQSLPTRAYLDQTVVPILLQGL K V D T R A 0 1 0 1 0 1 0 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 9 0 1027.5662 B4DIS3;Q9C005 B4DIS3 46 54 LOC84661;DPY30 Protein dpy-30 homolog yes no 2 0.0031039 72.643 2 1 0.73827 0.70211 18.091 2 Median 0.59992 0.6178 NaN 1 0 Median 0.90852 0.79792 NaN 1 0 Median 37829000 16605000 21224000 36027000 15561000 20466000 1801700 1043400 758230 13786 982 14163 36489;36490;36491 57189;57190;57191;57192;57193 57189 5 VDLVLLGK LQVARVLAKLAEKEKVDLVLLGKQAIDDDC KLAEKEKVDLVLLGKQAIDDDCNQTGQMTA K V D G K Q 0 0 0 1 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 2 0 0 8 0 855.54295 P38117 P38117 117 124 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.043729 52.403 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20649000 0 20649000 20649000 0 20649000 0 0 0 13787 1551 14164 36492 57194 57194 1 VDMKEEPLAVSK TSRSSKQRLKIPLVKVDMKEEPLAVSKLTR LVKVDMKEEPLAVSKLTRTSGETTQTHTEP K V D S K L 1 0 0 1 0 0 2 0 0 0 1 2 1 0 1 1 0 0 0 2 0 0 12 1 1344.6959 P46013 P46013 2489 2500 MKI67 Antigen KI-67 yes yes 2;3 0.00035561 84.169 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108310000 0 108310000 108310000 0 108310000 0 0 0 13788 1569 14165 36493;36494;36495 57195;57196;57197 57196 1346 3 VDNALQSGNSQESVTEQDSK LLNNFYPREAKVQWKVDNALQSGNSQESVT QSGNSQESVTEQDSKDSTYSLSSTLTLSKA K V D S K D 1 0 2 2 0 3 2 1 0 0 1 1 0 0 0 4 1 0 0 2 0 0 20 0 2134.9614 Q0KKI6;V9HW34;Q6PJF2;Q7Z3Y4;Q6PIL8;Q6P5S8;Q6GMX0;Q8TCD0;P01834;Q5EFE6;P0DOX7 Q0KKI6 155 174 HEL-213;IGK@;IGKC Ig kappa chain C region yes no 2 0.0015535 42.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3791400 3791400 0 3791400 3791400 0 0 0 0 13789 1439 14166 36496 57198 57198 1 VDNDENEHQLSLR LFGCELKADKDYHFKVDNDENEHQLSLRTV FKVDNDENEHQLSLRTVSLGAGAKDELHIV K V D L R T 0 1 2 2 0 1 2 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1567.7227 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;E5RGW4 A0A0S2Z4G7 33 45 NPM1 Nucleophosmin yes no 2;3 5.9456E-142 266.97 6 5 0.83643 0.81834 55.21 10 Median 1.2026 1.4034 4.4872 5 0 Median 0.56461 0.48878 3.5862 5 0 Median 2744900000 1245100000 1499800000 2415600000 1034500000 1381100000 329300000 210560000 118740000 13790 559 14167 36497;36498;36499;36500;36501;36502;36503;36504;36505;36506;36507 57199;57200;57201;57202;57203;57204;57205;57206;57207;57208;57209;57210;57211;57212;57213;57214;57215;57216;57217;57218;57219;57220;57221;57222;57223;57224;57225;57226 57200 27 VDNIQAGELTEGIWR LSRQGIIFKNSKTGKVDNIQAGELTEGIWR VDNIQAGELTEGIWRRVALGHGLKLLTKNG K V D W R R 1 1 1 1 0 1 2 2 0 2 1 0 0 0 0 0 1 1 0 1 0 0 15 0 1699.8529 A0A024R4Z6;Q08945;Q59GH7 A0A024R4Z6 40 54 SSRP1 FACT complex subunit SSRP1 yes no 2 1.4573E-38 169.23 2 2 0.76074 0.76384 3.8611 4 Median 0.63768 0.74382 0.88615 2 0 Median 0.91215 0.79178 2.2105 2 0 Median 647710000 386630000 261080000 478750000 297730000 181020000 168960000 88906000 80059000 13791 167 14168 36508;36509;36510;36511 57227;57228;57229;57230;57231;57232;57233;57234 57228 8 VDNLEEFLNDPLK LPLSIFIQIVQVSYKVDNLEEFLNDPLKKH YKVDNLEEFLNDPLKKHTLIRFLPRPIRQQ K V D L K K 0 0 2 2 0 0 2 0 0 0 3 1 0 1 1 0 0 0 0 1 0 0 13 0 1544.7722 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 927 939 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0017464 73.781 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4251800 0 4251800 4251800 0 4251800 0 0 0 13792 1699 14169 36512 57235 57235 1 VDNLLQLGFTAQEAR XARQLFKELYIDPSKVDNLLQLGFTAQEAR VDNLLQLGFTAQEARLGLRACDGNVDHAAT K V D A R L 2 1 1 1 0 2 1 1 0 0 3 0 0 1 0 0 1 0 0 1 0 0 15 0 1673.8737 H7C5N1;A0A090N8Q5;H3BM14;H3BM74;Q9Y5A7 H7C5N1 16 30 NUB1;NYREN18 NEDD8 ultimate buster 1 yes no 2 0.0014278 64.199 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13793 458 14170 36513;36514 57236;57237 57236 2 VDNLTYR YGRPPPDVEGMTSLKVDNLTYRTSPDTLRR VEGMTSLKVDNLTYRTSPDTLRRVFEKYGR K V D Y R T 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 7 0 879.44503 A0A024R3A8;Q9BRL6;A4D2F7;A4D2F6;J3QL05;J3KP15;Q8NAK9;Q53FN0;A0A024R8U5;Q01130;B3KX15;Q6NXQ0;Q8N220;B3KVY2;B3KUF7;B3KUY1 J3QL05 18 24 SRP46;SRSF8;LOC346472;LOC392896;SRSF2;SFRS2 Serine/arginine-rich splicing factor 8;Serine/arginine-rich splicing factor 2 no no 2 0.010479 111.04 2 1.3182 1.5005 NaN 1 Median 1.3182 1.5005 NaN 1 0 Median NaN NaN NaN 0 0 Median 162100000 91534000 70570000 162100000 91534000 70570000 0 0 0 13794 258;133 14171 36515;36516 57238;57239;57240 57239 3 VDNMIIQSISLLDQLDK GHSYSRAKVKFNVNRVDNMIIQSISLLDQL NMIIQSISLLDQLDKDINTFSMRVREWYGY R V D D K D 0 0 1 3 0 2 0 0 0 3 3 1 1 0 0 2 0 0 0 1 0 0 17 0 1944.0238 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 164 180 NOP56 Nucleolar protein 56 yes no 2 6.167E-05 60.628 1 1 1.0667 1.0839 NaN 1 Median 1.0667 1.0839 NaN 1 0 Median NaN NaN NaN 0 0 Median 13763000 6483700 7279500 13763000 6483700 7279500 0 0 0 13795 785 14172 36517;36518 57241;57242 57241 625 1 VDPDSQQNHSEIK LGHVTKTRRRCKTVRVDPDSQQNHSEIKIS VRVDPDSQQNHSEIKISNPTEFQNHEKQES R V D I K I 0 0 1 2 0 2 1 0 1 1 0 1 0 0 1 2 0 0 0 1 0 0 13 0 1495.6903 Q9BXS6;A8K4B4 Q9BXS6 97 109 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2;3 0.0025434 53.327 3 0.38135 0.39697 23.65 2 Median 0.38135 0.39697 23.65 2 0 Median NaN NaN NaN 0 0 Median 9856200 7466800 2389400 9856200 7466800 2389400 0 0 0 13796 2014 14173 36519;36520;36521 57243;57244;57245 57244 3 VDPEDTNLNQDSAK YDDNFNVNGPGEGVKVDPEDTNLNQDSAKE KVDPEDTNLNQDSAKELEDSPQENVSVTEI K V D A K E 1 0 2 3 0 1 1 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 14 0 1544.6954 Q5F1R6 Q5F1R6 412 425 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 0.00052661 78.692 3 2 0.72506 0.66917 17.206 3 Median 0.72506 0.74564 NaN 1 0 Median 0.74659 0.59683 16.179 2 0 Median 29772000 20316000 9455600 21194000 15846000 5347900 8577900 4470200 4107700 13797 1806 14174 36522;36523;36524;36525;36526 57246;57247;57248;57249;57250;57251 57247 6 VDPEIQNVK EVSVNQSLLQPLNVKVDPEIQNVKAQEREQ QPLNVKVDPEIQNVKAQEREQIKTLNNKFA K V D V K A 0 0 1 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 9 0 1040.5502 CON__P35908;P35908 CON__P35908 173 181 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.00010296 99.755 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93396000 93396000 0 71486000 71486000 0 21911000 21911000 0 + 13798 1166 14175 36527;36528 57252;57253;57254 57252 3 VDPLFTELLNGIR KAADALGKLISIHIKVDPLFTELLNGIRAM IKVDPLFTELLNGIRAMEDPGVRDTMLQAL K V D I R A 0 1 1 1 0 0 1 1 0 1 3 0 0 1 1 0 1 0 0 1 0 0 13 0 1485.8191 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2381 2393 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.00013248 73.781 2 1.6053 1.6468 17.544 2 Median 1.6053 1.6468 17.544 2 0 Median NaN NaN NaN 0 0 Median 11232000 4477100 6755100 11232000 4477100 6755100 0 0 0 13799 1205 14176 36529;36530 57255;57256;57257 57257 3 VDPMAIVVFHQADIGEYVR LGFGVAAKSTQDCRKVDPMAIVVFHQADIG AIVVFHQADIGEYVRHEETLT_________ K V D V R H 2 1 0 2 0 1 1 1 1 2 0 0 1 1 1 0 0 0 1 4 0 0 19 0 2158.0881 Q9Y221;B3KM49 Q9Y221 156 174 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 3 1.3687E-12 104.89 2 2 1.1375 1.1098 55.224 4 Median 1.5783 1.7861 0.81943 2 0 Median 0.83651 0.68637 1.4765 2 0 Median 158770000 64087000 94685000 131080000 49337000 81738000 27696000 14750000 12947000 13800 2119 14177 36531;36532;36533;36534 57258;57259;57260;57261;57262;57263;57264;57265 57260 1943 8 VDPSQPIDLTQLVNGR PLSLNRLQYLIDLGRVDPSQPIDLTQLVNG DPSQPIDLTQLVNGRGVTIQPLKRDYGVQL R V D G R G 0 1 1 2 0 2 0 1 0 1 2 0 0 0 2 1 1 0 0 2 0 0 16 0 1750.9214 E5RIZ4;B2R739;Q9P015;E5RHF4 E5RIZ4 51 66 MRPL15 39S ribosomal protein L15, mitochondrial yes no 2 0.0058786 35.677 1 1.5496 1.542 NaN 1 Median 1.5496 1.542 NaN 1 0 Median NaN NaN NaN 0 0 Median 8148000 3093900 5054100 8148000 3093900 5054100 0 0 0 13801 847 14178 36535 57266;57267 57267 2 VDQIQEIVTGNPTVIK LRLFKTALQEEIKSKVDQIQEIVTGNPTVI DQIQEIVTGNPTVIKMVVSFNRGARGQNAL K V D I K M 0 0 1 1 0 2 1 1 0 3 0 1 0 0 1 0 2 0 0 3 0 0 16 0 1752.9622 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;H0YLE8;B4E2M0 A4QPB0 1038 1053 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0001086 78.763 3 1.7397 1.7719 NaN 1 Median 1.7397 1.7719 NaN 1 0 Median NaN NaN NaN 0 0 Median 17190000 9085800 8104400 17190000 9085800 8104400 0 0 0 13802 352 14179 36536;36537;36538 57268;57269;57270;57271;57272 57270 5 VDQMEGGAAGPSASVR NLRELTTLLQKLQARVDQMEGGAAGPSASV DQMEGGAAGPSASVRDAVGQPPREAIQKEL R V D V R D 3 1 0 1 0 1 1 3 0 0 0 0 1 0 1 2 0 0 0 2 0 0 16 0 1530.7097 H7C2K3;H0Y6N5;H0Y742;A7MCZ7;E9PHI4;A0A146IHP0;A4D2Q0;O94901 H7C2K3 144 159 SUN1;UNC84A SUN domain-containing protein 1 yes no 2 7.3239E-05 62.924 2 1.044 1.1063 19.872 2 Median 1.044 1.1063 19.872 2 0 Median NaN NaN NaN 0 0 Median 7339500 2983500 4355900 7339500 2983500 4355900 0 0 0 13803 627 14180 36539;36540 57273;57274 57273 487 2 VDQSILTGESVSVIK PADIRLTSIKSTTLRVDQSILTGESVSVIK VDQSILTGESVSVIKHTDPVPDPRAVNQDK R V D I K H 0 0 0 1 0 1 1 1 0 2 1 1 0 0 0 3 1 0 0 3 0 0 15 0 1573.8563 A0A0S2Z3L2;P16615;Q8N3X5;Q7Z675;Q7Z6E5;O14983 A0A0S2Z3L2 175 189 ATP2A2;DKFZp779O2152;DKFZp779G2251;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Calcium-transporting ATPase;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 0.00062148 69.03 2 2.5272 2.6613 NaN 1 Median 2.5272 2.6613 NaN 1 0 Median NaN NaN NaN 0 0 Median 27362000 5627300 21735000 27362000 5627300 21735000 0 0 0 13804 554 14181 36541;36542 57275;57276;57277 57276 3 VDREQLVQK ______________________________ ______________________________ M V D Q K A 0 1 0 1 0 2 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 1 1113.6142 B4DE78;B3KNB4;P61981 B4DE78 2 10 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 2 0.0046249 69.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6846900 0 6846900 6846900 0 6846900 0 0 0 13805 912 14182 36543 57278 57278 1 VDSAATSGYEIGNPPDYR FRKLVTDQNISENWRVDSAATSGYEIGNPP AATSGYEIGNPPDYRGQSCMKRHGIPMSHV R V D Y R G 2 1 1 2 0 0 1 2 0 1 0 0 0 0 2 2 1 0 2 1 0 0 18 0 1910.8646 G5E9R5;A0A140VK37;Q59EH3;P24666 G5E9R5 42 59 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 2 5.0247E-09 80.96 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6323300 0 6323300 6323300 0 6323300 0 0 0 13806 615 14183 36544;36545 57279;57280 57280 2 VDSEGDFSENDDAAGDFR KQFQLYEEPDTKLARVDSEGDFSENDDAAG EGDFSENDDAAGDFRSGDEEFKGEDELCDS R V D F R S 2 1 1 5 0 0 2 2 0 0 0 0 0 2 0 2 0 0 0 1 0 0 18 0 1944.761 Q8NE02;O43823;M0QYL4;B7Z8L8 Q8NE02 321 338 AKAP8 A-kinase anchor protein 8 yes no 2 0.00043882 57.434 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13807 1390 14184 36546 57281 57281 1 VDSIQFSNTSNR GQPEKISELEFHTDKVDSIQFSNTSNRFVS TDKVDSIQFSNTSNRFVSGSRDGTARIWQF K V D N R F 0 1 2 1 0 1 0 0 0 1 0 0 0 1 0 3 1 0 0 1 0 0 12 0 1366.6477 Q8WWQ0 Q8WWQ0 368 379 PHIP PH-interacting protein yes yes 2 6.6475E-18 143.5 4 2 0.76094 0.87366 33.632 5 Median 0.76094 0.87366 14.682 3 0 Plateau 1.658 1.4256 3.8231 2 0 Median 455820000 239630000 216190000 397640000 217330000 180310000 58182000 22299000 35883000 13808 1942 14185 36547;36548;36549;36550;36551;36552 57282;57283;57284;57285;57286;57287;57288;57289 57289 6 VDSLEFSLESQK EADQSPKNSAILQNRVDSLEFSLESQKQMN QNRVDSLEFSLESQKQMNSDLQKQCEELVQ R V D Q K Q 0 0 0 1 0 1 2 0 0 0 2 1 0 1 0 3 0 0 0 1 0 0 12 0 1380.6773 P49454 P49454 832 843 CENPF Centromere protein F yes yes 2 0.00021114 88.056 2 1.6854 1.7165 NaN 1 Median 1.6854 1.7165 NaN 1 0 Median NaN NaN NaN 0 0 Median 39039000 20937000 18102000 39039000 20937000 18102000 0 0 0 13809 1581 14186 36553;36554 57290;57291 57291 2 VDSLLENLEK DLQAIKKELTQIKQKVDSLLENLEKIEKEQ QIKQKVDSLLENLEKIEKEQSKQAVEMKND K V D E K I 0 0 1 1 0 0 2 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1158.6132 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V5V7;B4DQQ2;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8;G3V4W0;B4DY08;B2R5W2;G3V4C1;G3V2D6 G3V4W0 194 203 HNRNPC;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 2 1.9634E-22 169.44 3 2 1.0807 1.3042 50.19 4 Linear 1.0662 1.2794 4.5599 2 0 Median 0.62087 0.53734 3.2262 2 0 Median 5511500000 2441700000 3069800000 5201600000 2250700000 2950900000 309880000 191020000 118860000 13810 837;781 14187 36555;36556;36557;36558;36559 57292;57293;57294;57295;57296;57297;57298;57299;57300;57301 57292 10 VDSQASITQDSDSIK RPALMVSIDLHQTGRVDSQASITQDSDSIK VDSQASITQDSDSIKKPEEIKQCSDAPVSV R V D I K K 1 0 0 3 0 2 0 0 0 2 0 1 0 0 0 4 1 0 0 1 0 0 15 0 1592.753 Q6IEH8;Q6KC79;A8K2T2;A6QL62 Q6IEH8 551 565 NIPBL Nipped-B-like protein yes no 2 0.00081201 67.456 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3950400 3950400 0 3950400 3950400 0 0 0 0 13811 1843 14188 36560 57302 57302 1 VDSTTCLFPVEEK GERGKDKKGSCNLSRVDSTTCLFPVEEKAV SRVDSTTCLFPVEEKAVEYYFASDASAVIE R V D E K A 0 0 0 1 1 0 2 0 0 0 1 1 0 1 1 1 2 0 0 2 0 0 13 0 1523.7178 Q06210 Q06210 259 271 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.051491 39.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4551000 4551000 0 4551000 4551000 0 0 0 0 13812 1688 14189 36561 57303 57303 1 VDTGPREDLIK MEKHHVPSDFNVNVKVDTGPREDLIKVLED VNVKVDTGPREDLIKVLEDMRQEYELIIKK K V D I K V 0 1 0 2 0 0 1 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 11 1 1241.6616 B2RBC7;Q8TC04;CON__Q9C075;A0A024R1X9;Q9C075 B2RBC7 16 26 KRT23 Keratin, type I cytoskeletal 23 yes no 2 0.0022466 80.165 2 0.57578 0.66256 13.67 2 Median 0.57578 0.66256 13.67 2 0 Median NaN NaN NaN 0 0 Median 51809000 32393000 19416000 51809000 32393000 19416000 0 0 0 + 13813 95 14190 36562;36563 57304;57305;57306 57306 3 VDTLPYVPEPIK ANLPSAVTSDQKSQKVDTLPYVPEPIKVAI SQKVDTLPYVPEPIKVAIAENLLDVIKDTR K V D I K V 0 0 0 1 0 0 1 0 0 1 1 1 0 0 3 0 1 0 1 2 0 0 12 0 1369.7493 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1654 1665 AHCTF1 Protein ELYS yes no 2 0.00018872 76.465 2 2 1.6465 1.5495 15.001 4 Median 1.2489 1.3809 0.27808 2 0 Median 2.1981 1.785 4.0006 2 0 Median 158890000 63461000 95433000 105110000 46535000 58573000 53786000 16926000 36860000 13814 1945 14191 36564;36565;36566;36567 57307;57308;57309;57310;57311 57309 5 VDTMIVQAISLLDDLDK AHSLSRYRLKFSADKVDTMIVQAISLLDDL TMIVQAISLLDDLDKELNNYIMRCREWYGW K V D D K E 1 0 0 4 0 1 0 0 0 2 3 1 1 0 0 1 1 0 0 2 0 0 17 0 1887.9863 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 158 174 NOP58 Nucleolar protein 58 yes no 2 3.0834E-05 74.987 2 1.0299 1.1974 25.545 2 Median 1.0299 1.1974 25.545 2 0 Median NaN NaN NaN 0 0 Median 482430000 184220000 298210000 482430000 184220000 298210000 0 0 0 13815 2129 14192 36568;36569 57312;57313 57313 1962 2 VDVAVNCAGIAVASK DVQTALALAKGKFGRVDVAVNCAGIAVASK VDVAVNCAGIAVASKTYNLKKGQTHTLEDF R V D S K T 4 0 1 1 1 0 0 1 0 1 0 1 0 0 0 1 0 0 0 4 0 0 15 0 1472.7657 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 85 99 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 1.0093E-05 92.925 2 1.9028 1.9471 10.89 2 Median 1.9028 1.9471 10.89 2 0 Median NaN NaN NaN 0 0 Median 59963000 18932000 41031000 59963000 18932000 41031000 0 0 0 13816 555 14193 36570;36571 57314;57315;57316 57314 3 VDVEALENSAGATYIR ALSKHLPSSDSMSLKVDVEALENSAGATYI DVEALENSAGATYIRKKGGKVTGDSQPKEQ K V D I R K 3 1 1 1 0 0 2 1 0 1 1 0 0 0 0 1 1 0 1 2 0 0 16 0 1706.8475 V9HWK0;O76094;Q86X80;A0PJJ5;Q0D2M6;Q71V07;D6RDY6;O15302 V9HWK0 516 531 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 0.0030104 44.616 2 2 1.4597 1.252 35.083 3 Median 1.9871 2.0226 NaN 1 0 Median 1.3345 1.1308 14.402 2 0 Median 14423000 4379100 10043000 7138500 2027300 5111200 7284000 2351800 4932200 13817 1416 14194 36572;36573;36574;36575 57317;57318;57319;57320 57317 4 VDVEEEFFALR TPTSSKPQSKRSLRKVDVEEEFFALRKRTP SLRKVDVEEEFFALRKRTPSAGKAMHTPKP K V D L R K 1 1 0 1 0 0 3 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 11 0 1352.6612 P46013 P46013 1518 1528 MKI67 Antigen KI-67 yes yes 2 7.8974E-05 98.044 2 2 1.9872 1.9541 17.547 4 Median 1.4563 1.6794 6.434 2 0 Median 2.6233 2.2507 4.9876 2 0 Median 406120000 159400000 246720000 348070000 143790000 204280000 58049000 15613000 42436000 13818 1569 14195 36576;36577;36578;36579 57321;57322;57323;57324;57325;57326;57327;57328;57329;57330 57328 10 VDVEEEFFALRK TPTSSKPQSKRSLRKVDVEEEFFALRKRTP LRKVDVEEEFFALRKRTPSAGKAMHTPKPA K V D R K R 1 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 2 0 0 12 1 1480.7562 P46013 P46013 1518 1529 MKI67 Antigen KI-67 yes yes 3 0.00068874 57.802 2 3.7104 3.1785 13.814 2 Median NaN NaN NaN 0 0 Median 3.7104 3.1785 13.814 2 0 Median 28787000 6177600 22610000 0 0 0 28787000 6177600 22610000 13819 1569 14196 36580;36581 57331;57332 57332 2 VDVGGSEPASLSYLSFEGATK HVIGIVTAKSGDIFKVDVGGSEPASLSYLS EPASLSYLSFEGATKRNRPNVQVGDLIYGQ K V D T K R 2 0 0 1 0 0 2 3 0 0 2 1 0 1 1 4 1 0 1 2 0 0 21 0 2113.0215 Q9NQT5;Q9NYS3 Q9NQT5 131 151 EXOSC3;PNAS-3 Exosome complex component RRP40 yes no 2 8.1521E-11 96.414 2 2 0.98192 0.87722 15.157 4 Median 0.98806 0.99646 3.5968 2 0 Median 0.96742 0.77056 3.9067 2 0 Median 93293000 47521000 45772000 54378000 28762000 25616000 38915000 18759000 20156000 13820 2061 14197 36582;36583;36584;36585 57333;57334;57335;57336;57337;57338;57339;57340;57341;57342 57333 10 VDWLTEK LTITQAVIFINTRRKVDWLTEKMHARDFTV IFINTRRKVDWLTEKMHARDFTVSAMHGDM K V D E K M 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 0 889.45453 A0A024R8W0;P38919;A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3QL43;B4DNH2;J3KSZ0;E7EQG2;Q14240;J3KTN0;B4DKP9;Q9NZE6;Q96B07;B4DJX6;J3QL52 A8K7F6 285 291 DDX48;EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.026686 76.134 1 1.7585 1.9656 NaN 1 Median 1.7585 1.9656 NaN 1 0 Median NaN NaN NaN 0 0 Median 100550000 37151000 63402000 100550000 37151000 63402000 0 0 0 13821 770;261 14198 36586 57343 57343 1 VDYSGGFEPFSVLR LGNSHQPEKPLVRLRVDYSGGFEPFSVLRF RVDYSGGFEPFSVLRFSQKFVDRVANPKDI R V D L R F 0 1 0 1 0 0 1 2 0 0 1 0 0 2 1 2 0 0 1 2 0 0 14 0 1571.762 Q05D78;F8W7U8;A0A024R395;P49959 Q05D78 367 380 MRE11A Double-strand break repair protein MRE11A yes no 2 0.0002091 85.813 2 0.76162 0.74949 NaN 1 Median 0.76162 0.74949 NaN 1 0 Median NaN NaN NaN 0 0 Median 18920000 8349700 10570000 18920000 8349700 10570000 0 0 0 13822 131 14199 36587;36588 57344;57345;57346 57346 3 VEAAGPGGESEPTGSGGTLAHTPR ASETESVPSRSRRGKVEAAGPGGESEPTGS SEPTGSGGTLAHTPRRSLPSHHGKKMRMAR K V E P R R 3 1 0 0 0 0 3 6 1 0 1 0 0 0 3 2 3 0 0 1 0 0 24 0 2234.0564 Q9UMN6 Q9UMN6 927 950 KMT2B Histone-lysine N-methyltransferase 2B yes yes 3 0.0012473 24.459 1 1.4952 1.2856 NaN 1 Median NaN NaN NaN 0 0 Median 1.4952 1.2856 NaN 1 0 Median 2789900 1273200 1516700 0 0 0 2789900 1273200 1516700 13823 2113 14200 36589 57347;57348;57349 57348 3 VEAFDNEFEATQK LPHKLRIKAKAMQIKVEAFDNEFEATQKLS IKVEAFDNEFEATQKLSSPIDMTSKRHFEL K V E Q K L 2 0 1 1 0 1 3 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 13 0 1526.6889 D9IVD5;A0A024R241;Q16649 D9IVD5 338 350 NFIL3 Nuclear factor interleukin-3-regulated protein yes no 2 0.0047936 59.198 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13824 103 14201 36590;36591 57350;57351 57350 2 VEAFEHR DMGIQDQGLKKVIQKVEAFEHRMYSHPLHN GLKKVIQKVEAFEHRMYSHPLHNDPNLETV K V E H R M 1 1 0 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 886.42972 P42285;A8K6I4;B4E3M6 P42285 797 803 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.02687 81.784 1 0.91239 0.94529 NaN 1 Median 0.91239 0.94529 NaN 1 0 Median NaN NaN NaN 0 0 Median 10356000 5209800 5146600 10356000 5209800 5146600 0 0 0 13825 1563 14202 36592 57352;57353 57352 2 VEAGDVIYIEANSGAVK LKLDPSIFESLQKERVEAGDVIYIEANSGA AGDVIYIEANSGAVKRQGRCDTYATEFDLE R V E V K R 3 0 1 1 0 0 2 2 0 2 0 1 0 0 0 1 0 0 1 3 0 0 17 0 1733.8836 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4I3 B5BUB1 185 201 RUVBL1 RuvB-like 1 yes no 2 1.459E-08 106.32 4 0.89567 0.91267 NaN 1 Median 0.89567 0.91267 NaN 1 0 Median NaN NaN NaN 0 0 Median 22840000 8576200 14264000 22840000 8576200 14264000 0 0 0 13826 1076 14203 36593;36594;36595;36596 57354;57355;57356;57357 57357 4 VEAGVLK DVYKIGGIGTVPVGRVEAGVLKPGMVVTFA IGTVPVGRVEAGVLKPGMVVTFAPVNVTTE R V E L K P 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 7 0 714.42759 Q53HR1 Q53HR1 171 177 Elongation factor 1-alpha yes yes 2 0.032919 64.776 1 0.82341 0.81014 NaN 1 Median 0.82341 0.81014 NaN 1 0 Median NaN NaN NaN 0 0 Median 19890000 11721000 8169800 19890000 11721000 8169800 0 0 0 13827 1790 14204 36597 57358 57358 1 VEAIDVEEAK IRLAEAHAKVRLSNKVEAIDVEEAKRLHRE RLSNKVEAIDVEEAKRLHREALKQSATDPR K V E A K R 2 0 0 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 10 0 1101.5554 B4DLA6;B3KMX0;A0A024R7U6;P33991 B4DLA6 713 722 MCM4 DNA replication licensing factor MCM4 yes no 2 0.00091667 79.148 2 1.5397 1.6175 66.298 2 Median 1.5397 1.6175 66.298 2 0 Median NaN NaN NaN 0 0 Median 50841000 22644000 28196000 50841000 22644000 28196000 0 0 0 13828 235 14205 36598;36599 57359;57360 57360 2 VEAKPEVQSQPPR PAEPVSLPQEPPKPRVEAKPEVQSQPPRVR PRVEAKPEVQSQPPRVREQRPRERPGFPPR R V E P R V 1 1 0 0 0 2 2 0 0 0 0 1 0 0 3 1 0 0 0 2 0 0 13 1 1463.7732 A0A024RDB2;A0A024RDE5;Q9UN86;A8K6V7 A0A024RDB2 245 257 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 2 0.012128 47.559 1 3.2262 3.5649 NaN 1 Median 3.2262 3.5649 NaN 1 0 Median NaN NaN NaN 0 0 Median 7063900 1370800 5693000 7063900 1370800 5693000 0 0 0 13829 382 14206 36600 57361;57362 57361 2 VEALPEQVAPESR YTMYSMMNVGQTAEKVEALPEQVAPESRNR EKVEALPEQVAPESRNRIRVRQDLASLPAE K V E S R N 2 1 0 0 0 1 3 0 0 0 1 0 0 0 2 1 0 0 0 2 0 0 13 0 1423.7307 A0A024R7E0;Q96RE7 A0A024R7E0 319 331 BTBD14B;NACC1 Nucleus accumbens-associated protein 1 yes no 2 0.011838 53.013 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13830 221 14207 36601 57363 57363 1 VEALTKEELEFEVPFR MRHKLKTAFKNFIEKVEALTKEELEFEVPF EALTKEELEFEVPFRDLGFNGAPYRSTCLL K V E F R D 1 1 0 0 0 0 5 0 0 0 2 1 0 2 1 0 1 0 0 2 0 0 16 1 1934.9989 Q9Y5B9 Q9Y5B9 787 802 SUPT16H FACT complex subunit SPT16 yes yes 3 1.2588E-06 91.457 2 1.0327 0.86034 4.7381 2 Median NaN NaN NaN 0 0 Median 1.0327 0.86034 4.7381 2 0 Median 11596000 5878700 5717000 0 0 0 11596000 5878700 5717000 13831 2148 14208 36602;36603 57364;57365 57365 2 VEAPEYIPISDDPK MESSPRKGSKKKPVKVEAPEYIPISDDPKA KVEAPEYIPISDDPKASAKKKMKSKKKVEQ K V E P K A 1 0 0 2 0 0 2 0 0 2 0 1 0 0 3 1 0 0 1 1 0 0 14 0 1571.7719 Q1ED39;H3BPL4 Q1ED39 250 263 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 0.00015258 76.332 2 1.6019 1.2951 7.5654 2 Median NaN NaN NaN 0 0 Median 1.6019 1.2951 7.5654 2 0 Median 15054000 5408000 9646300 0 0 0 15054000 5408000 9646300 13832 1775 14209 36604;36605 57366;57367;57368;57369 57367 4 VEAQLQELQVK VLLQGKGDSEHKRKKVEAQLQELQVKFNEG KRKKVEAQLQELQVKFNEGERVRTELADKV K V E V K F 1 0 0 0 0 3 2 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1283.7085 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5 A0A024R1N1 1250 1260 MYH9 Myosin-9 yes no 2 1.255E-40 188.87 2 2 1.7462 1.9517 8.8507 3 Median 1.7355 1.9478 0.28367 2 0 Median 2.7483 2.2704 NaN 1 0 Median 235240000 77235000 158000000 212670000 74165000 138500000 22570000 3070500 19499000 13833 81 14210 36606;36607;36608;36609 57370;57371;57372;57373;57374;57375 57371 6 VEAQVYILSK GLVMVKPGSIKPHQKVEAQVYILSKEEGGR KPHQKVEAQVYILSKEEGGRHKPFVSHFMP K V E S K E 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 1 2 0 0 10 0 1148.6441 P49411 P49411 352 361 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.0022162 70.1 2 1 1.5 1.6746 34.489 3 Plateau 1.4654 1.6039 11.315 2 0 Median 1.0968 0.89709 NaN 1 0 Median 96143000 36205000 59938000 90624000 33903000 56721000 5518300 2301300 3217000 13834 1580 14211 36610;36611;36612 57376;57377;57378;57379;57380 57379 5 VEASSLPEVR EPQKQCSKKKKKRDRVEASSLPEVRTGKRK KKRDRVEASSLPEVRTGKRKRSSSEDAESL R V E V R T 1 1 0 0 0 0 2 0 0 0 1 0 0 0 1 2 0 0 0 2 0 0 10 0 1085.5717 Q4G0J3;D6RFF0;H0YA82 Q4G0J3 282 291 LARP7 La-related protein 7 yes no 2 5.6389E-05 85.731 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12113000 12113000 0 12113000 12113000 0 0 0 0 13835 1779 14212 36613;36614;36615 57381;57382;57383 57382 3 VEAYQWSVSEGR GTREGQTRLIRDGEKVEAYQWSVSEGRWIK GEKVEAYQWSVSEGRWIKIGDVVGSSGANQ K V E G R W 1 1 0 0 0 1 2 1 0 0 0 0 0 0 0 2 0 1 1 2 0 0 12 0 1409.6575 Q9Y263;E5RIM3;H0YBW4 Q9Y263 362 373 PLAA Phospholipase A-2-activating protein yes no 2 0.0081238 59.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13836 2123 14213 36616 57384 57384 1 VECVLAELK YLPKAIKAWNNPSPRVECVLAELKGVTCEN NNPSPRVECVLAELKGVTCENREAVLDAFL R V E L K G 1 0 0 0 1 0 2 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 1059.5634 Q9Y4W2;B3KUJ7 Q9Y4W2 304 312 LAS1L Ribosomal biogenesis protein LAS1L yes no 2 0.051287 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13837 2146 14214 36617 57385 57385 1 VEDAADSATKPENLSSK LTPRKLSTRNRTPAKVEDAADSATKPENLS DAADSATKPENLSSKTRGSIPTDVEVLPTE K V E S K T 3 0 1 2 0 0 2 0 0 0 1 2 0 0 1 3 1 0 0 1 0 0 17 1 1760.8428 P46013;Q70L74 P46013 405 421 MKI67 Antigen KI-67 yes no 2;3 2.2211E-56 220.46 4 2 1.9563 2.2894 26.462 6 Median 1.8193 2.1464 12.298 4 0 Median 3.9893 3.3915 0.072053 2 0 Median 860180000 300540000 559650000 748880000 277510000 471370000 111310000 23032000 88276000 13838 1569 14215 36618;36619;36620;36621;36622;36623 57386;57387;57388;57389;57390;57391;57392;57393 57387 8 VEDFTQNPR RNLPLKLLIMSATLRVEDFTQNPRLFAKPP MSATLRVEDFTQNPRLFAKPPPVIKVESRQ R V E P R L 0 1 1 1 0 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 9 0 1104.52 Q8IY37;F5H3Y4 Q8IY37 413 421 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.0042933 69.628 2 1.0928 0.92739 2.9615 2 Median NaN NaN NaN 0 0 Median 1.0928 0.92739 2.9615 2 0 Median 6982300 3290100 3692200 0 0 0 6982300 3290100 3692200 13839 1897 14216 36624;36625 57394;57395;57396;57397 57394 4 VEDLFLTFAK ARKKKLLEAQSHFRKVEDLFLTFAKKASAF SHFRKVEDLFLTFAKKASAFNSWFENAEED K V E A K K 1 0 0 1 0 0 1 0 0 0 2 1 0 2 0 0 1 0 0 1 0 0 10 0 1181.6332 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 2074 2083 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0016591 72.643 1 1.5594 1.6324 NaN 1 Median 1.5594 1.6324 NaN 1 0 Median NaN NaN NaN 0 0 Median 10525000 3335500 7189200 10525000 3335500 7189200 0 0 0 13840 523 14217 36626 57398;57399 57399 2 VEDLTFTSPFCLQVK TNACLIKEVDIYTVKVEDLTFTSPFCLQVK VEDLTFTSPFCLQVKRNDYVHALVAYFNIE K V E V K R 0 0 0 1 1 1 1 0 0 0 2 1 0 2 1 1 2 0 0 2 0 0 15 0 1782.8862 E9PKG1;Q5U8W9;H7C2I1;Q99873;A0A087X1W2 E9PKG1 216 230 PRMT1;HRMT1L2 Protein arginine N-methyltransferase 1 yes no 2 0.036982 24.696 1 0.94209 0.7569 NaN 1 Median NaN NaN NaN 0 0 Median 0.94209 0.7569 NaN 1 0 Median 2842800 1429400 1413400 0 0 0 2842800 1429400 1413400 13841 1243 14218 36627 57400 57400 1 VEDMAELTCLNEASVLHNLK NKDDIQKMNPPKFSKVEDMAELTCLNEASV ELTCLNEASVLHNLKERYYSGLIYTYSGLF K V E L K E 2 0 2 1 1 0 3 0 1 0 4 1 1 0 0 1 1 0 0 2 0 0 20 0 2285.1032 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1;Q5BKV1;B1AH99;E7ERA5;G1UI33;P35580 A0A024R1N1 83 102 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 1.0017E-13 108.92 4 2.8984 2.3263 29.007 4 Median NaN NaN NaN 0 0 Median 2.8984 2.3263 29.007 4 0 Median 58781000 15942000 42840000 0 0 0 58781000 15942000 42840000 13842 81;1544 14219;14220 36628;36629;36630;36631 57401;57402;57403;57404;57405 57402 74 5 VEDPTFLNQLQSGVNR YERGEKPKVTDFGDKVEDPTFLNQLQSGVN EDPTFLNQLQSGVNRWIREIQKVTKLDRDP K V E N R W 0 1 2 1 0 2 1 1 0 0 2 0 0 1 1 1 1 0 0 2 0 0 16 0 1815.9115 Q14204;B4DSR6 Q14204 236 251 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 2.5208E-05 79.492 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5427600 0 5427600 5427600 0 5427600 0 0 0 13843 1729 14221 36632 57406 57406 1 VEDQELPTQPEAPDEHQDMDADPGGPEFLK GPLTLTRPRPRKRAKVEDQELPTQPEAPDE HQDMDADPGGPEFLKTPLGGSFLVYESFLY K V E L K T 2 0 0 5 0 3 5 2 1 0 2 1 1 1 5 0 1 0 0 1 0 0 30 0 3333.4619 Q4VC44;I3L188;J3KNW1;B3KRZ0 Q4VC44 394 423 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 3 4.6785E-11 51.539 1 1.129 1.1384 NaN 1 Median 1.129 1.1384 NaN 1 0 Median NaN NaN NaN 0 0 Median 28126000 16164000 11962000 28126000 16164000 11962000 0 0 0 13844 1781 14222 36633 57407 57407 1649 1 VEDSTMPIRR IVGAQLIHADKLGEKVEDSTMPIRRTVNST KLGEKVEDSTMPIRRTVNSTRETPPKSKLA K V E R R T 0 2 0 1 0 0 1 0 0 1 0 0 1 0 1 1 1 0 0 1 0 0 10 1 1202.6078 Q5SSJ5;X6RGJ2;B0QZK9;B0QZK8 Q5SSJ5 34 43 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.011666 50.04 2 0.82545 0.90498 6.85 2 Median 0.82545 0.90498 6.85 2 0 Median NaN NaN NaN 0 0 Median 44599000 24614000 19986000 44599000 24614000 19986000 0 0 0 13845 1817 14223 36634;36635 57408;57409 57408 1677 1 VEDVSAVEIVGGATR IEVPLYSLLEQTHLKVEDVSAVEIVGGATR VEDVSAVEIVGGATRIPAVKERIAKFFGKD K V E T R I 2 1 0 1 0 0 2 2 0 1 0 0 0 0 0 1 1 0 0 4 0 0 15 0 1500.7784 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 332 346 HSPH1 Heat shock protein 105 kDa yes no 2 1.1284E-05 90.926 2 2 1.4519 1.2818 NaN 1 Median NaN NaN NaN 0 0 Median 1.4519 1.2818 NaN 1 0 Median 27565000 22831000 4734700 21341000 21341000 0 6224400 1489700 4734700 13846 390 14224 36636;36637;36638;36639 57410;57411;57412;57413;57414 57410 5 VEEAEPEEFVVEK TLQKMGKKQNGKSKKVEEAEPEEFVVEKVL KKVEEAEPEEFVVEKVLDRRVVNGKVEYFL K V E E K V 1 0 0 0 0 0 6 0 0 0 0 1 0 1 1 0 0 0 0 3 0 0 13 0 1532.7246 A4D177;Q13185;C9JMM0;B8ZZ43;S4R2Y4 A4D177 22 34 CBX3 Chromobox protein homolog 3 yes no 2 0.00015285 88.187 2 1 0.9957 1.0221 7.021 3 Plateau 0.97263 1.0174 0.88116 2 0 Median 1.1391 0.90137 NaN 1 0 Median 69971000 33364000 36607000 63756000 30443000 33313000 6214900 2921200 3293700 13847 662 14225 36640;36641;36642 57415;57416;57417;57418;57419 57417 5 VEEAIVAR TQLLINQLWQLPTERVEEAIVARLPEPTTR WQLPTERVEEAIVARLPEPTTRLPREKPLP R V E A R L 2 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 8 0 885.49198 Q15050 Q15050 84 91 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.00047696 116.54 4 2 0.93725 0.79634 11.87 3 Median 0.83745 0.95416 NaN 1 0 Median 0.94302 0.77947 3.0281 2 0 Median 189410000 114220000 75192000 166890000 101860000 65030000 22521000 12359000 10162000 13848 1750 14226 36643;36644;36645;36646;36647;36648 57420;57421;57422;57423;57424;57425;57426 57420 7 VEEEGSPGDPDHEASTQGR FKPSSLPHPLEGSRKVEEEGSPGDPDHEAS GSPGDPDHEASTQGRTCGPEHSKGGGRVDE K V E G R T 1 1 0 2 0 1 4 3 1 0 0 0 0 0 2 2 1 0 0 1 0 0 19 0 1995.8406 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2;B3KMQ6;V9H0E3 Q6PK21 166 184 OGFR Opioid growth factor receptor yes no 3 0.0046371 54.974 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13849 469 14227 36649 57427 57427 1 VEEISPNIR ASAFTEEQAVLYNQRVEEISPNIRYCAYNI VLYNQRVEEISPNIRYCAYNIGDQSAINEL R V E I R Y 0 1 1 0 0 0 2 0 0 2 0 0 0 0 1 1 0 0 0 1 0 0 9 0 1055.5611 Q9UHB9;B4DVI7;B3KMI9 Q9UHB9 237 245 SRP68 Signal recognition particle subunit SRP68 yes no 2 0.0015501 95.531 2 2 1.2421 1.1733 26.717 4 Median 0.9683 1.0061 1.8652 2 0 Median 1.7515 1.5378 18.386 2 0 Median 52060000 27300000 24760000 48988000 26140000 22848000 3072300 1160400 1911800 13850 2101 14228 36650;36651;36652;36653 57428;57429;57430;57431;57432;57433;57434 57430 7 VEEQEPELTSTPNFVVEVIK SPTFDGEEEPSQGQKVEEQEPELTSTPNFV PELTSTPNFVVEVIKNDDGKRALVLDCHYP K V E I K N 0 0 1 0 0 1 5 0 0 1 1 1 0 1 2 1 2 0 0 4 0 0 20 0 2286.1631 A8K651;Q07021;I3L3Q7;I3L3B0 A8K651 155 174 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 2 9.7198E-09 91.812 2 2 1.3235 1.2492 63.303 4 Median 1.9718 2.1278 0.26486 2 0 Median 0.88985 0.71149 4.5642 2 0 Median 103910000 40283000 63630000 78326000 26703000 51623000 25587000 13580000 12007000 13851 756 14229 36654;36655;36656;36657 57435;57436;57437;57438;57439;57440;57441;57442;57443 57443 9 VEEVLEEEEEEYVVEK ______________________________ EEVLEEEEEEYVVEKVLDRRVVKGKVEYLL K V E E K V 0 0 0 0 0 0 9 0 0 0 1 1 0 0 0 0 0 0 1 4 0 0 16 0 1979.9099 B5MD17;J3KS05;Q6IBN6;P83916;K7ELA4;C9JWS9 B5MD17 10 25 CBX1 Chromobox protein homolog 1 yes no 2 0.027673 42.031 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13852 1081 14230 36658 57444 57444 1 VEFATLQEALAHALTEK AELEMRLQNALNEQRVEFATLQEALAHALT FATLQEALAHALTEKEGKDQELAKLRGLEA R V E E K E 4 0 0 0 0 1 3 0 1 0 3 1 0 1 0 0 2 0 0 1 0 0 17 0 1869.9836 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 1043 1059 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 1.3262E-25 118.53 4 2 0.82125 0.89813 21.689 6 Median 0.80252 0.82574 12.28 4 0 Median 1.3988 1.1739 11.727 2 0 Median 215720000 108170000 107550000 113400000 61856000 51544000 102320000 46313000 56003000 13853 186;1747 14231 36659;36660;36661;36662;36663;36664 57445;57446;57447;57448;57449;57450;57451;57452;57453;57454;57455;57456;57457 57456 13 VEFMDDTSR VLGRTGSQGQCTQVRVEFMDDTSRSIIRNV QCTQVRVEFMDDTSRSIIRNVKGPVREGDV R V E S R S 0 1 0 2 0 0 1 0 0 0 0 0 1 1 0 1 1 0 0 1 0 0 9 0 1098.4652 B2R4R9;P62857 B2R4R9 32 40 RPS28 40S ribosomal protein S28 yes no 2 0.00088103 80.455 4 1 1.4559 1.5944 10.402 4 Median 1.4319 1.6193 2.3271 3 0 Median 1.5053 1.3125 NaN 1 0 Median 242710000 111620000 131090000 241240000 110960000 130270000 1473300 655110 818200 13854 829 14232;14233 36665;36666;36667;36668;36669 57458;57459;57460;57461;57462 57460 657 5 VEFSISDK AKDVEGSTSPQIGDKVEFSISDKQRPGQQV SPQIGDKVEFSISDKQRPGQQVATCVRLLG K V E D K Q 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 2 0 0 0 1 0 0 8 0 923.46001 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 458 465 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 0.023811 65.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13855 42 14234 36670 57463 57463 1 VEFTFPDFVTEGAR FEANTYQETYKRISRVEFTFPDFVTEGARD RVEFTFPDFVTEGARDLISRLLKHNPSQRP R V E A R D 1 1 0 1 0 0 2 1 0 0 0 0 0 3 1 0 2 0 0 2 0 0 14 0 1613.7726 O14965;B4DX16;B2R6Z3 O14965 344 357 AURKA Aurora kinase A yes no 2 1.4624E-06 108.37 2 2 1.2136 1.1527 6.826 4 Median 1.1249 1.1964 0.12527 2 0 Median 1.2853 1.0741 4.8461 2 0 Median 97520000 44623000 52897000 73623000 33652000 39971000 23897000 10971000 12926000 13856 1369 14235 36671;36672;36673;36674 57464;57465;57466;57467;57468;57469;57470;57471 57464 8 VEGTDVTGIEEVVIPK ARSCRFYSGSATLSKVEGTDVTGIEEVVIP EGTDVTGIEEVVIPKKKTWDKVAVLQALAS K V E P K K 0 0 0 1 0 0 3 2 0 2 0 1 0 0 1 0 2 0 0 4 0 0 16 0 1683.8931 Q96EY7;B8ZZQ4;B4DF73;F8WE76 Q96EY7 46 61 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes no 2 0.00038663 68.676 2 1.8766 1.9307 0.55066 2 Median 1.8766 1.9307 0.55066 2 0 Median NaN NaN NaN 0 0 Median 23159000 8467600 14691000 23159000 8467600 14691000 0 0 0 13857 1963 14236 36675;36676 57472;57473 57473 2 VEGTEPTTAFNLFVGNLNFNK EMAKQKAAPEAKKQKVEGTEPTTAFNLFVG TTAFNLFVGNLNFNKSAPELKTGISDVFAK K V E N K S 1 0 4 0 0 0 2 2 0 0 2 1 0 3 1 0 3 0 0 2 0 0 21 0 2311.1485 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 221 241 NCL Nucleolin yes no 2 4.4112E-47 159.64 2 1.1216 1.264 NaN 1 Median 1.1216 1.264 NaN 1 0 Median NaN NaN NaN 0 0 Median 143430000 54605000 88828000 143430000 54605000 88828000 0 0 0 13858 151 14237 36677;36678 57474;57475;57476;57477;57478;57479;57480 57480 7 VEHINLHPELDGQEYVVEFDFLGK EEGETADTVGCCSLRVEHINLHPELDGQEY LDGQEYVVEFDFLGKDSIRYYNKVPVEKRV R V E G K D 0 0 1 2 0 1 4 2 2 1 3 1 0 2 1 0 0 0 1 3 0 0 24 0 2826.3865 P11387;B9EG90 P11387 509 532 TOP1 DNA topoisomerase 1 yes no 3;4 1.6917E-56 160.88 3 1.5583 1.2937 14.507 3 Plateau NaN NaN NaN 0 0 Median 1.5583 1.2937 14.507 3 0 Plateau 88126000 35808000 52319000 0 0 0 88126000 35808000 52319000 13859 1470 14238 36679;36680;36681 57481;57482;57483;57484;57485 57485 5 VEHNQSYSQAGITETEWTSGSSK LKGRAKTPVTLKQRRVEHNQSYSQAGITET QAGITETEWTSGSSKGGPLQALTRESTRGS R V E S K G 1 0 1 0 0 2 3 2 1 1 0 1 0 0 0 5 3 1 1 1 0 0 23 0 2525.1306 A0A024RBE7;P42167 A0A024RBE7 217 239 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 3 0.052159 9.5366 2 1.1401 0.90279 22.786 2 Median NaN NaN NaN 0 0 Median 1.1401 0.90279 22.786 2 0 Median 6325000 3097300 3227700 0 0 0 6325000 3097300 3227700 13860 334 14239 36682;36683 57486;57487 57486 2 VEIAGPGFINVHLR ENITKHLPDNECIEKVEIAGPGFINVHLRK KVEIAGPGFINVHLRKDFVSEQLTSLLVNG K V E L R K 1 1 1 0 0 0 1 2 1 2 1 0 0 1 1 0 0 0 0 2 0 0 14 0 1520.8463 P54136 P54136 154 167 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 1.0677E-05 91.858 2 2 0.8506 0.70819 5.5716 2 Median NaN NaN NaN 0 0 Median 0.8506 0.70819 5.5716 2 0 Median 40672000 6217100 34455000 28682000 0 28682000 11990000 6217100 5773200 13861 1609 14240 36684;36685;36686;36687 57488;57489;57490;57491 57489 4 VEIDQQQLTQQQLNGN RDEEDEERESKSRGKVEIDQQQLTQQQLNG EIDQQQLTQQQLNGN_______________ K V E G N - 0 0 2 1 0 6 1 1 0 1 2 0 0 0 0 0 1 0 0 1 0 0 16 0 1854.9072 A0A0D9SGE8;Q8IWS0;B4E138 A0A0D9SGE8 351 366 PHF6 PHD finger protein 6 yes no 2 0.0076455 63.624 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9538100 0 0 9538100 0 0 0 0 0 13862 528 14241 36688 57492 57492 1 VEIETSEEIQEK NGESASPERDRESLKVEIETSEEIQEKQVQ SLKVEIETSEEIQEKQVQKQTLPSKAFERE K V E E K Q 0 0 0 0 0 1 5 0 0 2 0 1 0 0 0 1 1 0 0 1 0 0 12 0 1432.6933 Q14676 Q14676 892 903 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.046405 33.229 1 1.7092 1.4721 NaN 1 Median NaN NaN NaN 0 0 Median 1.7092 1.4721 NaN 1 0 Median 1386900 731470 655380 0 0 0 1386900 731470 655380 13863 1738 14242 36689 57493 57493 1 VEILANDQGNR LGTTYSCVGVFQQGRVEILANDQGNRTTPS QQGRVEILANDQGNRTTPSYVAFTDTERLV R V E N R T 1 1 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1227.6208 Q53FC7;B3KSM6;B2R6X5;P17066;P48741 Q53FC7 28 38 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 yes no 2 9.263E-23 164.68 4 2 1.0737 1.0896 10.524 4 Median 1.0093 1.1872 0.068394 2 0 Median 1.1415 0.99001 1.4989 2 0 Median 1062000000 519180000 542830000 934770000 458250000 476520000 127240000 60930000 66309000 13864 845 14243 36690;36691;36692;36693;36694;36695 57494;57495;57496;57497;57498;57499;57500;57501;57502;57503;57504;57505;57506 57494 13 VEILNEHR GCGRLNEPIKVLCRRVEILNEHRGEKLNRV IKVLCRRVEILNEHRGEKLNRVKMVEKEKD R V E H R G 0 1 1 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 1008.5352 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 274 281 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 0.00095514 124.08 4 1 0.94866 1.0544 20.599 5 Median 0.9163 1.0356 6.5555 4 0 Median 1.9514 1.633 NaN 1 0 Median 340090000 168890000 171200000 336190000 167460000 168730000 3906700 1429900 2476800 13865 2070 14244 36696;36697;36698;36699;36700 57507;57508;57509;57510;57511;57512;57513;57514 57508 8 VEITPESILSALSK ATTTSHNPLANILSKVEITPESILSALSKT KVEITPESILSALSKTQTQSAPALQGLSSL K V E S K T 1 0 0 0 0 0 2 0 0 2 2 1 0 0 1 3 1 0 0 1 0 0 14 0 1485.829 Q5VT52 Q5VT52 514 527 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.0067802 54.259 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1038600 0 1038600 1038600 0 1038600 0 0 0 13866 1830 14245 36701 57515 57515 1 VELCSFSGYK ______________________________ ______________________________ K V E Y K I 0 0 0 0 1 0 1 1 0 0 1 1 0 1 0 2 0 0 1 1 0 0 10 0 1188.5485 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 3 12 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 2 1.6945E-09 130.75 3 2 0.98327 1.0448 15.003 5 Median 0.69658 0.84529 14.277 3 0 Median 1.2414 1.0907 6.0861 2 0 Median 4810100000 2820400000 1989800000 4127400000 2519200000 1608200000 682710000 301170000 381530000 13867 1140 14246 36702;36703;36704;36705;36706 57516;57517;57518;57519;57520;57521;57522;57523;57524;57525;57526;57527;57528 57520 13 VELDNMPLR GFIRLETRTLAEIAKVELDNMPLRGKQLRV LAEIAKVELDNMPLRGKQLRVRFACHSASL K V E L R G 0 1 1 1 0 0 1 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 9 0 1085.5539 A8K525;A0A0S2Z4Z9;Q15233;C9IZL7;C9JYS8;A0A0S2Z4E7;C9J4X2 A8K525 127 135 NONO Non-POU domain-containing octamer-binding protein yes no 2 2.6683E-06 132.08 1 3 1.4712 1.2731 76.903 3 Median 1.691 1.9377 NaN 1 0 Median 0.8612 0.74512 75.755 2 0 Median 137560000 49758000 87802000 133090000 47377000 85718000 4465300 2381600 2083700 13868 573 14247;14248 36707;36708;36709;36710 57529;57530;57531;57532;57533;57534;57535;57536 57530 429 8 VELECETIK ILDQKLNGLNEEIARVELECETIKQENTRL NEEIARVELECETIKQENTRLQNIIDNQKY R V E I K Q 0 0 0 0 1 0 3 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1119.5482 A8K031;O14777;Q05DQ6 A8K031 338 346 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.023125 56.434 1 1 1.3096 1.0575 NaN 1 Median NaN NaN NaN 0 0 Median 1.3096 1.0575 NaN 1 0 Median 16157000 949620 15207000 13605000 0 13605000 2552100 949620 1602500 13869 696 14249 36711;36712 57537;57538;57539 57537 3 VELEVPQLCNFILK PGTADSRSATKINCKVELEVPQLCNFILKT KVELEVPQLCNFILKTSDCTLKEVDGLNPE K V E L K T 0 0 1 0 1 1 2 0 0 1 3 1 0 1 1 0 0 0 0 2 0 0 14 0 1700.9171 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 77 90 yes yes 2 0.00023379 83.862 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9994100 9994100 0 9994100 9994100 0 0 0 0 + 13870 1146 14250 36713 57540 57540 1 VELHSTCQTISVDR GYIGVVKDATESTARVELHSTCQTISVDRQ RVELHSTCQTISVDRQRLTTVGSRRPGGMT R V E D R Q 0 1 0 1 1 1 1 0 1 1 1 0 0 0 0 2 2 0 0 2 0 0 14 0 1643.7937 B4E0Q4;B4DZJ7;O00267;B4DJK4 B4E0Q4 593 606 SUPT5H Transcription elongation factor SPT5 yes no 3 0.005688 27.969 1 0.88803 0.91612 NaN 1 Median 0.88803 0.91612 NaN 1 0 Median NaN NaN NaN 0 0 Median 4799400 2435600 2363800 4799400 2435600 2363800 0 0 0 13871 1056 14251 36714 57541;57542 57542 2 VELIAYFEK DVYLINPQGKAFRSKVELIAYFEKVGDTSL KAFRSKVELIAYFEKVGDTSLDPNDFDFTV K V E E K V 1 0 0 0 0 0 2 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1110.5961 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;I6LM39;A0A087WVW7;B5MCB4;A0A075BPP5;A0A0S2Z401;A0A0D9SFX7;D5L9I4;A0A0S2Z3U3;A0A1B0GTV0 A0A140VKC4 148 156 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.0096069 64.04 1 1 0.50874 0.40029 NaN 1 Median NaN NaN NaN 0 0 Median 0.50874 0.40029 NaN 1 0 Median 3113400 1874300 1239200 0 0 0 3113400 1874300 1239200 13872 623 14252 36715;36716 57543;57544;57545 57543 3 VELINMFK V E F K 0 0 1 0 0 0 1 0 0 1 1 1 1 1 0 0 0 0 0 1 0 0 8 0 992.53649 REV__Q498Y9 yes no 2 0.029068 40.103 1 1.0845 0.87029 NaN 1 Median NaN NaN NaN 0 0 Median 1.0845 0.87029 NaN 1 0 Median 2469400 1292900 1176500 0 0 0 2469400 1292900 1176500 + 13873 2158 14253 36717 57546 57546 2003 1 VELQELNDR DAINTEFKNTRTNEKVELQELNDRFANYID TRTNEKVELQELNDRFANYIDKVRFLEQQN K V E D R F 0 1 1 1 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1114.5619 V9HWE1;P08670;B0YJC4;Q53HU8;B3KRK8;A0A1B0GUA0;A0A1B0GTT5;Q9H319;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;B4DUI0 V9HWE1 105 113 HEL113;VIM;tmp_locus_29;DES Vimentin;Desmin yes no 2 1.8581E-08 148.52 2 2 2.2592 2.2781 43.691 4 Median 1.319 1.5525 2.776 2 0 Median 3.8289 3.3069 1.246 2 0 Median 1300500000 546790000 753690000 1229600000 531770000 697830000 70886000 15023000 55863000 13874 1457 14254 36718;36719;36720;36721 57547;57548;57549;57550;57551;57552;57553;57554 57550 8 VELQQGLR VGFSSQLYGYALLGKVELQQGLRAVYHNMP GYALLGKVELQQGLRAVYHNMPLIWKPGYL K V E L R A 0 1 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 941.52943 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;B4DKI9;D6RH20 Q6PKB3 42 49 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.0082133 79.597 2 1.7892 1.859 4.0289 2 Median 1.7892 1.859 4.0289 2 0 Median NaN NaN NaN 0 0 Median 42174000 14728000 27446000 42174000 14728000 27446000 0 0 0 13875 305 14255 36722;36723 57555;57556 57555 2 VELSDVQNPAISITENVLHFK PHVYWAQRHRELYLRVELSDVQNPAISITE QNPAISITENVLHFKAQGHGAKGDNVYEFH R V E F K A 1 0 2 1 0 1 2 0 1 2 2 1 0 1 1 2 1 0 0 3 0 0 21 0 2352.2325 Q9P035 Q9P035 23 43 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 3 7.5816E-16 102.98 2 1 0.9479 0.98563 18.251 3 Median 0.97135 1.0334 6.6974 2 0 Median 0.9479 0.76154 NaN 1 0 Median 53141000 28462000 24678000 37215000 19235000 17980000 15925000 9226900 6698300 13876 2091 14256 36724;36725;36726 57557;57558;57559;57560;57561;57562;57563;57564 57559 8 VELSPMQK DVFKNMPSKTELIVRVELSPMQKKYYKYIL KTELIVRVELSPMQKKYYKYILTRNFEALN R V E Q K K 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 8 0 930.48445 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;Q12873 F5GWX5 969 976 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.028561 53.166 2 2.3031 1.8667 8.9481 2 Median NaN NaN NaN 0 0 Median 2.3031 1.8667 8.9481 2 0 Median 5528800 1626700 3902100 0 0 0 5528800 1626700 3902100 13877 515;1701 14257 36727;36728 57565;57566 57565 2 VELSQLR GKKKEELLKQLDDLKVELSQLRVAKVTGGA LKQLDDLKVELSQLRVAKVTGGAASKLSKI K V E L R V 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 843.48142 P42766;F2Z388;A0A024R866;A4D2M5 P42766 26 32 RPL35;LOC154880 60S ribosomal protein L35 yes no 2 0.010057 122.79 3 2 0.58177 0.58518 14.108 4 Median 0.56051 0.66523 1.8786 2 0 Median 0.59886 0.52139 0.070852 2 0 Median 3520400000 2249000000 1271500000 3146700000 2017800000 1129000000 373680000 231190000 142490000 13878 1567 14258 36729;36730;36731;36732;36733 57567;57568;57569;57570;57571;57572;57573;57574;57575;57576;57577 57567 11 VELSTGMPR VRGLDGKVICGSRVRVELSTGMPRRSRFDR CGSRVRVELSTGMPRRSRFDRPPARRPFDP R V E P R R 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 9 0 988.50117 Q16629;A0A0B4J1Z1;B4DEK2;C9JAB2;Q8NB80 Q16629 79 87 SRSF7 Serine/arginine-rich splicing factor 7 no no 2 3.4769E-06 130.27 2 1.4601 1.6907 0.24942 2 Median 1.4601 1.6907 0.24942 2 0 Median NaN NaN NaN 0 0 Median 394660000 153350000 241310000 394660000 153350000 241310000 0 0 0 13879 1772;1918 14259 36734;36735 57578;57579;57580;57581 57578 1644 4 VELTITPDFQWDEK ELSVHLQPITRSTLKVELTITPDFQWDEKV KVELTITPDFQWDEKVHGSSEAFWILVEDV K V E E K V 0 0 0 2 0 1 2 0 0 1 1 1 0 1 1 0 2 1 0 1 0 0 14 0 1719.8356 O75643;A4FU77 O75643 1200 1213 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 2.0634E-09 117.79 2 2 0.86057 0.85147 13.419 4 Median 0.83944 0.91785 0.87592 2 0 Median 0.91818 0.74279 9.5685 2 0 Median 100510000 56879000 43634000 85158000 48364000 36794000 15355000 8514600 6840300 13880 1411 14260 36736;36737;36738;36739 57582;57583;57584;57585;57586;57587;57588 57584 7 VELVTGEEDEK SDDIHFEPVVQMPEKVELVTGEEDEKVLYS MPEKVELVTGEEDEKVLYSQRVKLFRFDAE K V E E K V 0 0 0 1 0 0 4 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1246.5929 P49792 P49792 2023 2033 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.027828 60.102 1 1 1.8915 1.7881 49.91 2 Median 2.543 2.5449 NaN 1 0 Median 1.407 1.2564 NaN 1 0 Median 16313000 5365600 10947000 15535000 4987600 10548000 777640 377970 399670 13881 1588 14261 36740;36741 57589;57590 57589 1 VEMDNLDNAQTSGIEEPSETK KVDLETLKEDSEFTKVEMDNLDNAQTSGIE DNAQTSGIEEPSETKGSMQKSKFKYKLVPE K V E T K G 1 0 2 2 0 1 4 1 0 1 1 1 1 0 1 2 2 0 0 1 0 0 21 0 2306.022 Q96T23;H0YER1;H0YCN2 Q96T23 678 698 RSF1 Remodeling and spacing factor 1 yes no 2 1.8082E-61 158.65 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9938500 4980800 4957800 9938500 4980800 4957800 0 0 0 13882 1991 14262 36742;36743;36744;36745 57591;57592;57593;57594 57593 1822 4 VENLFNEK SFEAWNAKITDLKQKVENLFNEKCGEALGL ITDLKQKVENLFNEKCGEALGLKQAVKVPF K V E E K C 0 0 2 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 991.49746 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 696 703 GTF2I General transcription factor II-I yes no 2 0.0018562 105.14 1 1.0014 1.1035 NaN 1 Median 1.0014 1.1035 NaN 1 0 Median NaN NaN NaN 0 0 Median 43309000 21160000 22148000 43309000 21160000 22148000 0 0 0 13883 789 14263 36746 57595;57596 57595 2 VENMVDQLLR DTPLIYKAVPSWFVRVENMVDQLLRNNDLC SWFVRVENMVDQLLRNNDLCYWVPELVREK R V E L R N 0 1 1 1 0 1 1 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 10 0 1215.6282 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4 Q59G75 436 445 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.043108 63.216 1 2.2785 2.3036 NaN 1 Median 2.2785 2.3036 NaN 1 0 Median NaN NaN NaN 0 0 Median 9745700 3267300 6478500 9745700 3267300 6478500 0 0 0 13884 1561 14264 36747 57597 57597 1314 0 VENSIPAAGETQNVEVAAGPAGK EWGDDEEEQPSKRRRVENSIPAAGETQNVE GETQNVEVAAGPAGKCAAVDVEPPSKQKEK R V E G K C 5 0 2 0 0 1 3 3 0 1 0 1 0 0 2 1 1 0 0 3 0 0 23 0 2208.1022 Q15020;B4DYA2;B4DRG9;F8VV04 Q15020 647 669 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 7.3146E-05 48.823 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6837500 0 6837500 6837500 0 6837500 0 0 0 13885 1748 14265 36748;36749 57598;57599 57599 2 VEPAVIEAQNAVK VIADKQMSVKEDLDKVEPAVIEAQNAVKSI DKVEPAVIEAQNAVKSIKKQHLVEVRSMAN K V E V K S 3 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 0 0 3 0 0 13 0 1366.7456 Q14204 Q14204 3285 3297 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00036536 62.466 1 3.9137 4.0683 NaN 1 Median 3.9137 4.0683 NaN 1 0 Median NaN NaN NaN 0 0 Median 9931300 3263300 6668000 9931300 3263300 6668000 0 0 0 13886 1729 14266 36750 57600 57600 1 VEPAVSSVVNSIQVLTSK SSPKDKKKKEKKVAKVEPAVSSVVNSIQVL AVSSVVNSIQVLTSKAAILETAPKEVPMVV K V E S K A 1 0 1 0 0 1 1 0 0 1 1 1 0 0 1 4 1 0 0 5 0 0 18 0 1856.0255 A0A0A0MRV0;A7BI36;Q9P2E9;A2A2S5;Q32NB1 A0A0A0MRV0 149 166 RRBP1 Ribosome-binding protein 1 yes no 2 1.4953E-11 101.3 2 0.82006 0.85727 3.2414 2 Median 0.82006 0.85727 3.2414 2 0 Median NaN NaN NaN 0 0 Median 23000000 13011000 9988900 23000000 13011000 9988900 0 0 0 13887 471 14267 36751;36752 57601;57602;57603;57604;57605;57606;57607 57606 7 VEPFVCAQCR SVIDSQGKSCASLLRVEPFVCAQCRTDFTP ASLLRVEPFVCAQCRTDFTPHWKQEKNGKI R V E C R T 1 1 0 0 2 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 10 0 1264.5693 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR30 A0A0U1RRM1 399 408 GATAD2B Transcriptional repressor p66-beta yes no 2 0.0013769 73.931 2 2 1.0458 0.98442 49.848 4 Median 0.61126 0.63439 4.044 2 0 Median 1.7819 1.5026 1.7085 2 0 Median 64874000 38753000 26121000 55634000 35546000 20088000 9239400 3206500 6032900 13888 591 14268 36753;36754;36755;36756 57608;57609;57610;57611;57612;57613;57614;57615 57608 8 VEPGLGADNSVVR ASKIVGPSGAAVPCKVEPGLGADNSVVRFL CKVEPGLGADNSVVRFLPREEGPYEVEVTY K V E V R F 1 1 1 1 0 0 1 2 0 0 1 0 0 0 1 1 0 0 0 3 0 0 13 0 1311.6783 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 1020 1032 FLNA Filamin-A yes no 2 0.00019093 70.942 1 2 2.898 2.5528 45.288 3 Median 1.1048 1.1756 NaN 1 0 Median 2.9906 2.5755 1.2519 2 0 Median 33000000 14160000 18840000 24302000 11620000 12682000 8697100 2539300 6157900 13889 1504 14269 36757;36758;36759 57616;57617;57618 57616 3 VEPSDNGPLFTELK NSSESVGGDAPCVVKVEPSDNGPLFTELKF KVEPSDNGPLFTELKFYQRAAKPEQIQKWI K V E L K F 0 0 1 1 0 0 2 1 0 0 2 1 0 1 2 1 1 0 0 1 0 0 14 0 1544.7722 A8K245;Q99986 A8K245 72 85 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.00011813 82.171 2 2 1.1684 1.1091 34.858 4 Median 1.3657 1.5113 4.1522 2 0 Median 1.0272 0.82774 1.7749 2 0 Median 162050000 72635000 89415000 139240000 60852000 78392000 22806000 11783000 11023000 13890 707 14270 36760;36761;36762;36763 57619;57620;57621;57622;57623;57624 57620 5 VEPVGDVVSTR GKPLKISRRVLRAPKVEPVGDVVSTRDPVK RAPKVEPVGDVVSTRDPVKSQSKSNTSLPP K V E T R D 0 1 0 1 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 4 0 0 11 0 1156.6088 P46013 P46013 2968 2978 MKI67 Antigen KI-67 yes yes 2 0.00104 70.552 2 2 2.1451 2.1669 17.771 4 Median 1.5721 1.8511 8.5187 2 0 Median 2.8594 2.477 5.158 2 0 Median 1353500000 477620000 875830000 1256700000 451120000 805580000 96753000 26496000 70257000 13891 1569 14271 36764;36765;36766;36767 57625;57626;57627;57628;57629;57630;57631;57632 57627 8 VEPVGDVVSTRDPVK GKPLKISRRVLRAPKVEPVGDVVSTRDPVK VEPVGDVVSTRDPVKSQSKSNTSLPPLPFK K V E V K S 0 1 0 2 0 0 1 1 0 0 0 1 0 0 2 1 1 0 0 5 0 0 15 1 1595.8519 P46013 P46013 2968 2982 MKI67 Antigen KI-67 yes yes 2;3 8.9541E-05 88.021 4 4 2.8801 2.4492 12.848 7 Median 1.8056 2.1595 3.9786 3 0 Median 3.0835 2.6657 5.6168 4 0 Median 273140000 89763000 183380000 175650000 66450000 109200000 97489000 23314000 74176000 13892 1569 14272 36768;36769;36770;36771;36772;36773;36774;36775 57633;57634;57635;57636;57637;57638;57639;57640;57641;57642;57643;57644 57640 12 VEPVGNAPLLALVHK VFFSSPLPGEEPIGRVEPVGNAPLLALVHK VEPVGNAPLLALVHKMNNCLSQMEQFPVKV R V E H K M 2 0 1 0 0 0 1 1 1 0 3 1 0 0 2 0 0 0 0 3 0 0 15 0 1555.9086 Q14669 Q14669 1207 1221 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 0.005273 44.457 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4860600 0 4860600 4860600 0 4860600 0 0 0 13893 1736 14273 36776 57645 57645 1 VEPYSLTAQQSSLIR PSRAGSPRRTSKKTKVEPYSLTAQQSSLIR VEPYSLTAQQSSLIREDKSNAKLWNEVLAS K V E I R E 1 1 0 0 0 2 1 0 0 1 2 0 0 0 1 3 1 0 1 1 0 0 15 0 1690.889 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 684 698 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.00020184 77.593 5 2 0.79717 0.69095 2.6911 2 Median NaN NaN NaN 0 0 Median 0.79717 0.69095 2.6911 2 0 Median 14070000 9329300 4741000 4789500 4789500 0 9280700 4539700 4741000 13894 406 14274 36777;36778;36779;36780;36781;36782;36783 57646;57647;57648;57649;57650;57651;57652;57653 57646 8 VEPYSLTAQQSSLIREDK PSRAGSPRRTSKKTKVEPYSLTAQQSSLIR YSLTAQQSSLIREDKSNAKLWNEVLASLKD K V E D K S 1 1 0 1 0 2 2 0 0 1 2 1 0 0 1 3 1 0 1 1 0 0 18 1 2063.0535 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 684 701 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.056396 16.306 1 0.97308 0.83176 NaN 1 Median NaN NaN NaN 0 0 Median 0.97308 0.83176 NaN 1 0 Median 2826800 1623000 1203900 0 0 0 2826800 1623000 1203900 13895 406 14275 36784 57654 57654 1 VEQATKPSFESGR ARDMNGKSLDGKAIKVEQATKPSFESGRRG IKVEQATKPSFESGRRGPPPPPRSRGPPRG K V E G R R 1 1 0 0 0 1 2 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 13 1 1434.7103 H0Y6E7;H3BT71;P38159;B4E352 H0Y6E7 83 95 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2;3 7.4817E-18 142.1 4 3 1.4577 1.7498 61.621 7 Median 1.7283 1.9972 14.611 4 0 Median 0.83552 0.72999 12.412 3 0 Plateau 238070000 98244000 139820000 188930000 70560000 118370000 49142000 27685000 21457000 13896 1284 14276 36785;36786;36787;36788;36789;36790;36791 57655;57656;57657;57658;57659;57660;57661;57662;57663;57664;57665 57660 11 VEQESLLTAFR IGVAVDLILLFRELRVEQESLLTAFRCGLQ RELRVEQESLLTAFRCGLQFLGNIASRNED R V E F R C 1 1 0 0 0 1 2 0 0 0 2 0 0 1 0 1 1 0 0 1 0 0 11 0 1291.6772 Q9UBB4;Q7Z524 Q9UBB4 123 133 ATXN10 Ataxin-10 yes no 2 0.004767 65.347 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13897 2095 14277 36792;36793 57666;57667 57666 2 VEQFLTIAR LSLRRSGRQPKRTERVEQFLTIARRRGRRS PKRTERVEQFLTIARRRGRRSMPVSLEDSG R V E A R R 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1075.6026 Q9BTC0 Q9BTC0 74 82 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0066968 94.85 1 2 1.2017 0.99701 18.102 3 Median 0.72063 0.76578 NaN 1 0 Median 1.2305 1.0391 5.8512 2 0 Median 35848000 19090000 16758000 24137000 13729000 10408000 11711000 5360900 6350300 13898 2002 14278 36794;36795;36796 57668;57669;57670;57671;57672 57670 4 VEQLGAEGNVEESQK RVHELNEEIGKLLAKVEQLGAEGNVEESQK VEQLGAEGNVEESQKVMDEVEKARAKKREA K V E Q K V 1 0 1 0 0 2 4 2 0 0 1 1 0 0 0 1 0 0 0 2 0 0 15 0 1615.7689 B3KRR1;B3KSL5;A0A0A6YYJ8;Q9Y383 B3KRR1 87 101 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 2 2.0645E-38 166.48 2 1 0.72874 0.76779 33.66 3 Plateau 0.71233 0.72464 8.1803 2 0 Median 0.50916 0.40803 NaN 1 0 Median 65839000 38019000 27820000 58438000 33333000 25105000 7401000 4686100 2714900 13899 494 14279 36797;36798;36799 57673;57674;57675;57676 57675 4 VEQLQQEYTEMK VRNRQQDVRMTANRKVEQLQQEYTEMKALL NRKVEQLQQEYTEMKALLDASETTSTRKIK K V E M K A 0 0 0 0 0 3 3 0 0 0 1 1 1 0 0 0 1 0 1 1 0 0 12 0 1524.713 Q14258;Q59GW5;D3DTY9 Q14258 238 249 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 2 1.2881E-18 147.74 2 2.3941 2.4215 NaN 1 Median 2.3941 2.4215 NaN 1 0 Median NaN NaN NaN 0 0 Median 15543000 2255100 13288000 15543000 2255100 13288000 0 0 0 13900 1731;1802 14280 36800;36801 57677;57678 57678 1565 2 VEQVLSLEPQHELK ______________________________ KVEQVLSLEPQHELKFRGPFTDVVTTNLKL K V E L K F 0 0 0 0 0 2 3 0 1 0 3 1 0 0 1 1 0 0 0 2 0 0 14 0 1647.8832 Q53XM7;O95292;E5RK64 Q53XM7 4 17 VAPB Vesicle-associated membrane protein-associated protein B/C yes no 2 0.0029309 58.274 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13901 1423 14281 36802 57679 57679 1 VESHFDLELR GRHSKGVAKTVTKQRVESHFDLELRAAVMH VTKQRVESHFDLELRAAVMHDILDMMPEGI R V E L R A 0 1 0 1 0 0 2 0 1 0 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1243.6197 Q6P2Q9;I3L0J9 Q6P2Q9 677 686 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.012486 31.597 2 0.84712 0.88872 13.654 2 Median 0.84712 0.88872 13.654 2 0 Median NaN NaN NaN 0 0 Median 48530000 27270000 21259000 48530000 27270000 21259000 0 0 0 13902 1854 14282 36803;36804 57680;57681;57682;57683 57681 4 VESLDVDSEAK DKIEDVPAPSTSADKVESLDVDSEAKKLLG SADKVESLDVDSEAKKLLGLGQKHLVMGDI K V E A K K 1 0 0 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1190.5667 Q53H03;P49321;E9PI86;O95138;Q5T626;Q6PJY7;Q5T624 Q53H03 34 44 NASP Nuclear autoantigenic sperm protein yes no 2 0.00022817 91.584 2 1.4738 1.5539 0.31986 2 Median 1.4738 1.5539 0.31986 2 0 Median NaN NaN NaN 0 0 Median 39996000 19008000 20988000 39996000 19008000 20988000 0 0 0 13903 1579 14283 36805;36806 57684;57685 57685 2 VESLESLYFTPIPAR PGEPASPISQRLPPKVESLESLYFTPIPAR VESLESLYFTPIPARSQAPLESSLDSLGDV K V E A R S 1 1 0 0 0 0 2 0 0 1 2 0 0 1 2 2 1 0 1 1 0 0 15 0 1720.9036 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1753 1767 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 4.5793E-11 116.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14395000 0 14395000 14395000 0 14395000 0 0 0 13904 186;1747 14284 36807 57686;57687 57687 2 VESLLVTAISK DPGFAKQKVYNPRIRVESLLVTAISKASAQ PRIRVESLLVTAISKASAQQRAGRAGRTRP R V E S K A 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 1 0 0 2 0 0 11 0 1158.686 O43143;B4E0S6 O43143 453 463 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.00036959 83.862 2 1 1.1288 1.0701 14.27 2 Median 1.1051 1.1837 NaN 1 0 Median 1.1529 0.96741 NaN 1 0 Median 46813000 26321000 20492000 44933000 25383000 19550000 1880100 938110 941940 13905 1379 14285 36808;36809;36810 57688;57689;57690 57689 3 VESLQEEIAFLK DVDNASLARLDLERKVESLQEEIAFLKKLH ERKVESLQEEIAFLKKLHEEEIQELQAQIQ K V E L K K 1 0 0 0 0 1 3 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1404.75 V9HWE1;P08670;B0YJC4;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 224 235 HEL113;VIM Vimentin yes no 2 5.3172E-39 188.04 2 2 1.9476 1.9083 28.2 4 Median 1.2914 1.5288 0.48677 2 0 Median 3.0489 2.4814 6.2751 2 0 Median 1101000000 472680000 628340000 1050200000 460270000 589960000 50795000 12407000 38387000 13906 1457 14286 36811;36812;36813;36814 57691;57692;57693;57694;57695;57696;57697;57698 57691 8 VESQEREDVLAGMSGK LWKEDLAAFVEELDKVESQEREDVLAGMSG ESQEREDVLAGMSGKAIKGKVGKPKVKKLQ K V E G K A 1 1 0 1 0 1 3 2 0 0 1 1 1 0 0 2 0 0 0 2 0 0 16 1 1733.8254 Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1171 1186 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 3.214E-06 88.075 4 1 0.70547 0.82212 20.271 5 Median 0.68251 0.78396 13.091 4 0 Median 1.3421 1.1557 NaN 1 0 Median 130670000 79003000 51667000 128250000 77898000 50357000 2415500 1105600 1310000 13907 1679 14287;14288 36815;36816;36817;36818;36819 57699;57700;57701;57702;57703;57704;57705 57703 1487 6 VESTGAVPEFK PDFFLDEYPEAVSKKVESTGAVPEFKEEKL VSKKVESTGAVPEFKEEKLQLQPKPRSGAV K V E F K E 1 0 0 0 0 0 2 1 0 0 0 1 0 1 1 1 1 0 0 2 0 0 11 0 1162.587 B2R923;A0A024R159;Q6YN16;B4DWC7;B4E136 B2R923 212 222 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 0.035604 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13908 70 14289 36820 57706 57706 1 VESVEPSENEASK VKHVIADQEVMETNRVESVEPSENEASKEL NRVESVEPSENEASKELEPEMEFEIEPDKE R V E S K E 1 0 1 0 0 0 4 0 0 0 0 1 0 0 1 3 0 0 0 2 0 0 13 0 1403.6416 Q9H307;A8K964;B4DTD4;B4E392 Q9H307 411 423 PNN Pinin yes no 2 0.0024841 53.569 1 1.6757 1.7287 NaN 1 Median 1.6757 1.7287 NaN 1 0 Median NaN NaN NaN 0 0 Median 4184000 1782000 2401900 4184000 1782000 2401900 0 0 0 13909 2028 14290 36821 57707 57707 1 VESVTAGSPLTNQFYLAAPR SMSVVLKLFPQLEGKVESVTAGSPLTNQFY AGSPLTNQFYLAAPRGACYGADHDLGRLHP K V E P R G 3 1 1 0 0 1 1 1 0 0 2 0 0 1 2 2 2 0 1 2 0 0 20 0 2120.0902 H7C3J0;B4DKE1;Q6NUM9;I0EZ74 H7C3J0 301 320 RETSAT All-trans-retinol 13,14-reductase yes no 2 0.048219 32.068 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13910 988 14291 36822 57708 57708 1 VETDHIVAAVGLEPNVELAK VSSGKLLIKLKDGRKVETDHIVAAVGLEPN IVAAVGLEPNVELAKTGGLEIDSDFGGFRV K V E A K T 3 0 1 1 0 0 3 1 1 1 2 1 0 0 1 0 1 0 0 4 0 0 20 0 2103.1212 O95831;A0A140VK04;E9PMA0 O95831 389 408 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 3 0.035996 25.207 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2240400 0 2240400 0 0 0 2240400 0 2240400 13911 1431 14292 36823 57709 57709 1 VETEAEDAALDCSVNSR FTEDVEEVLKSITVKVETEAEDAALDCSVN TEAEDAALDCSVNSRTSEKHSVDSVLTALQ K V E S R T 3 1 1 2 1 0 3 0 0 0 1 0 0 0 0 2 1 0 0 2 0 0 17 0 1864.8109 Q5T5X7 Q5T5X7 21 37 BEND3 BEN domain-containing protein 3 yes yes 2 0.0055563 50.207 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13912 1822 14293 36824 57710 57710 1 VETEQAEIQELK ALENKEKELQLLNDKVETEQAEIQELKKSN NDKVETEQAEIQELKKSNHLLEDSLKELQL K V E L K K 1 0 0 0 0 2 4 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 12 0 1415.7144 P49454 P49454 920 931 CENPF Centromere protein F yes yes 2 1.1613E-37 167.12 2 1.2784 1.3093 NaN 1 Median 1.2784 1.3093 NaN 1 0 Median NaN NaN NaN 0 0 Median 14878000 10249000 4629000 14878000 10249000 4629000 0 0 0 13913 1581 14294 36825;36826 57711;57712;57713;57714 57711 4 VETFSGVYK KVHLDKAQQNNVEHKVETFSGVYKKLTGKD NNVEHKVETFSGVYKKLTGKDVNFEFPEFQ K V E Y K K 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 1 0 1 2 0 0 9 0 1028.5179 P62081 P62081 170 178 RPS7 40S ribosomal protein S7 yes yes 2 0.00022612 105.57 2 2 0.94729 1.1903 25.259 4 Linear 0.97663 1.1519 0.51054 2 0 Median 0.89879 0.74438 2.7104 2 0 Median 898510000 463650000 434860000 818200000 422450000 395750000 80310000 41197000 39113000 13914 1631 14295 36827;36828;36829;36830 57715;57716;57717;57718;57719;57720;57721;57722;57723;57724;57725;57726 57716 12 VETGVLK DVYKIGGIGTVPVGRVETGVLKPGMVVTFA IGTVPVGRVETGVLKPGMVVTFAPVNVTTE R V E L K P 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 7 0 744.43815 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q9NZS6;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q14222 Q6IPT9 267 273 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 2 0.02074 86.866 3 1 2.2957 2.2241 51.757 2 Median 2.6945 3.207 NaN 1 0 Median 1.956 1.5425 NaN 1 0 Median 1307300000 186250000 1121100000 1296500000 182790000 1113700000 10837000 3465600 7371000 13915 1658 14296 36831;36832;36833;36834 57727;57728;57729;57730;57731 57730 5 VETGVLKPGMVVTFAPVNVTTEVK DVYKIGGIGTVPVGRVETGVLKPGMVVTFA MVVTFAPVNVTTEVKSVEMHHEALSEALPG R V E V K S 1 0 1 0 0 0 2 2 0 0 1 2 1 1 2 0 4 0 0 7 0 0 24 1 2514.3767 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;B4DNE0;Q53G89;Q9NZS6;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q14222 Q6IPT9 267 290 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 3 1.9688E-21 109.39 4 3 2.0731 2.2332 60.983 7 Median 3.0724 3.6053 35.902 4 0 Median 1.8631 1.5938 40.261 3 0 Median 1071500000 258380000 813090000 854760000 178090000 676670000 216710000 80293000 136420000 13916 1658 14297;14298 36835;36836;36837;36838;36839;36840;36841 57732;57733;57734;57735;57736;57737;57738;57739;57740;57741;57742 57735 1438 11 VETPVLPPVLVPR MKKDEVCVNPYHYQRVETPVLPPVLVPRHT QRVETPVLPPVLVPRHTEIPAEFPPLDDYS R V E P R H 0 1 0 0 0 0 1 0 0 0 2 0 0 0 4 0 1 0 0 4 0 0 13 0 1414.8548 H0YMP2;H0YL71;H3BP09;H3BVD1;K7EJX0;Q59F45;A0A024R5Z3;A0A024RDR3;B7Z5N5;Q53XR6;P84022;Q15796;O15198 H0YMP2 25 37 SMAD3;SMAD2;SMAD9 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 9 yes no 2 2.7001E-06 109.29 2 1 1.6307 1.6359 23.1 3 Median 1.6396 1.6581 1.9032 2 0 Median 1.248 1.1121 NaN 1 0 Median 29375000 12826000 16549000 27423000 12104000 15319000 1952000 721690 1230300 13917 192 14299 36842;36843;36844 57743;57744;57745;57746;57747;57748 57743 6 VETTEDLVAK VISVEDPPQRTAGVKVETTEDLVAKLKEIG TAGVKVETTEDLVAKLKEIGRI________ K V E A K L 1 0 0 1 0 0 2 0 0 0 1 1 0 0 0 0 2 0 0 2 0 0 10 0 1103.571 P38117 P38117 239 248 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.02954 52.126 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1341600 0 1341600 0 0 0 1341600 0 1341600 13918 1551 14300 36845 57749;57750 57750 2 VETYLNENLR QLLNERIKLEGIITRVETYLNENLRKRLDQ GIITRVETYLNENLRKRLDQVEQELNELRE R V E L R K 0 1 2 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 1 0 0 10 0 1249.6303 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 828 837 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0057873 74.92 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13919 803 14301 36846 57751 57751 1 VEVDTFMEAYDQK ISDYADSVPDPEALRVEVDTFMEAYDQKIA LRVEVDTFMEAYDQKIAEEEAKAKEEEGVP R V E Q K I 1 0 0 2 0 1 2 0 0 0 0 1 1 1 0 0 1 0 1 2 0 0 13 0 1573.697 Q9Y3A4 Q9Y3A4 171 183 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 8.3991E-07 101.39 4 1 1.7257 1.8589 55.778 3 Plateau 1.622 1.7036 13.304 2 0 Median 0.83332 0.65735 NaN 1 0 Median 46534000 15360000 31174000 44507000 14091000 30416000 2027400 1269000 758410 13920 2133 14302 36847;36848;36849;36850;36851 57752;57753;57754;57755;57756;57757;57758 57757 1966 7 VEVNIPR HICLVTPSMTLTRAKVEVNIPRKRKGNCSQ SMTLTRAKVEVNIPRKRKGNCSQHDRALER K V E P R K 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 2 0 0 7 0 825.47085 B3KPC1;A0A024QZR3;Q9BRX2 B3KPC1 163 169 hCG_2002731;PELO Protein pelota homolog yes no 2 0.026774 78.616 1 1.245 1.2969 NaN 1 Median 1.245 1.2969 NaN 1 0 Median NaN NaN NaN 0 0 Median 13402000 5617200 7785300 13402000 5617200 7785300 0 0 0 13921 26 14303 36852 57759 57759 1 VEVNTNSGEIIHK QPSKLVKRGPGRKPKVEVNTNSGEIIHKKR PKVEVNTNSGEIIHKKRGRKPKKLQYAKPE K V E H K K 0 0 2 0 0 0 2 1 1 2 0 1 0 0 0 1 1 0 0 2 0 0 13 0 1438.7416 Q8WWQ0;Q9NWP3 Q8WWQ0 1645 1657 PHIP PH-interacting protein yes no 2;3 1.9152E-38 193.96 4 4 1.1272 1.0872 13.421 8 Median 0.84855 0.96414 3.067 4 0 Median 1.4763 1.1947 5.7641 4 0 Median 687250000 353030000 334220000 626250000 328180000 298060000 61009000 24848000 36161000 13922 1942 14304 36853;36854;36855;36856;36857;36858;36859;36860 57760;57761;57762;57763;57764;57765;57766;57767;57768;57769;57770;57771;57772;57773;57774 57763 15 VEVPQPLSWYPEELAWHTNLSR KYFKELEDLEVDGQKVEVPQPLSWYPEELA SWYPEELAWHTNLSRKILRKSPHLEKFHQF K V E S R K 1 1 1 0 0 1 3 0 1 0 3 0 0 0 3 2 1 2 1 2 0 0 22 0 2650.318 Q08J23;A0A140T9Y7 Q08J23 112 133 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 3 0.00011123 36.253 2 1 1.0183 1.0147 33.202 3 Median 1.1106 1.1056 12.123 2 0 Median 0.75743 0.63431 NaN 1 0 Median 25957000 12583000 13374000 15761000 6576400 9184200 10196000 6007000 4189300 13923 1694 14305 36861;36862;36863 57775;57776;57777 57776 3 VEVQVLNIDIPR KTKKRRSLGLGPGERVEVQVLNIDIPRSRI GERVEVQVLNIDIPRSRITLDLIRVL____ R V E P R S 0 1 1 1 0 1 1 0 0 2 1 0 0 0 1 0 0 0 0 3 0 0 12 0 1393.7929 B3KPM8;Q8N5C6;B7ZAA7;B7Z6X7 B3KPM8 973 984 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.00014324 93.258 1 2 1.6755 1.481 3.3395 3 Median 1.3872 1.4556 NaN 1 0 Median 1.7608 1.5164 3.339 2 0 Median 18933000 9068900 9863700 12026000 6142400 5883300 6906800 2926500 3980400 13924 921 14306 36864;36865;36866 57778;57779;57780;57781;57782;57783;57784 57779 7 VEWSAFLEAADNLR PVEFNPNFVARMIPKVEWSAFLEAADNLRL KVEWSAFLEAADNLRLIQVPKGPVEGYEEN K V E L R L 3 1 1 1 0 0 2 0 0 0 2 0 0 1 0 1 0 1 0 1 0 0 14 0 1619.7944 F5GX77;A0A024R565;Q9UI30;F5GYQ2 F5GX77 49 62 TRMT112;HSPC152 Multifunctional methyltransferase subunit TRM112-like protein yes no 2 0.0012054 89.403 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10060000 10060000 0 10060000 10060000 0 0 0 0 13925 170 14307 36867;36868 57785;57786;57787 57785 3 VEYPIMYSTDPENGHIFNCIQR AHLAINVSKARKKYKVEYPIMYSTDPENGH STDPENGHIFNCIQRAHQNTLEVYPPFLFF K V E Q R A 0 1 2 1 1 1 2 1 1 3 0 0 1 1 2 1 1 0 2 1 0 0 22 0 2682.2207 Q53GB9;A0A024R8Z1;Q5VV89;O14880;Q5VV87 Q53GB9 38 59 MGST3 Microsomal glutathione S-transferase 3 yes no 3 5.8326E-06 45.88 1 2.2379 2.32 NaN 1 Median 2.2379 2.32 NaN 1 0 Median NaN NaN NaN 0 0 Median 22830000 7247700 15582000 22830000 7247700 15582000 0 0 0 13926 265 14308 36869 57788 57788 204 1 VEYSEEELK KRKHDNEGSGSKRPKVEYSEEELKTHISKG GSKRPKVEYSEEELKTHISKGTLGKFTVPM K V E L K T 0 0 0 0 0 0 4 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 9 0 1124.5237 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356;Q6IC76 A0A024R1N4 557 565 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 1.1693E-06 136.8 2 2 0.32489 0.32242 31.828 4 Median 0.36539 0.42925 11.234 2 0 Median 0.30022 0.25109 6.1224 2 0 Median 936590000 685350000 251250000 841330000 611210000 230120000 95257000 74137000 21121000 13927 82 14309 36870;36871;36872;36873 57789;57790;57791;57792;57793;57794;57795;57796 57791 8 VFAEYPGSSAQLR GFMDFICSLVTKSVKVFAEYPGSSAQLRVL VKVFAEYPGSSAQLRVLLAFYASTIVSALV K V F L R V 2 1 0 0 0 1 1 1 0 0 1 0 0 1 1 2 0 0 1 1 0 0 13 0 1423.7096 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 202 214 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00015572 78.488 1 2 1.6861 1.4343 NaN 1 Median NaN NaN NaN 0 0 Median 1.6861 1.4343 NaN 1 0 Median 75112000 7504700 67607000 43164000 0 43164000 31948000 7504700 24443000 13928 897 14310 36874;36875;36876 57797;57798;57799;57800 57799 4 VFANAPDSACVIGLK LWLSEKLREVYRKGRVFANAPDSACVIGLK VFANAPDSACVIGLKKKAVAFSPVTELKKD R V F L K K 3 0 1 1 1 0 0 1 0 1 1 1 0 1 1 1 0 0 0 2 0 0 15 0 1560.797 P17858;Q7L2M7;Q9BSP4;B3KNQ7 P17858 699 713 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 2 0.0026551 44.299 1 0.9439 0.9544 NaN 1 Median 0.9439 0.9544 NaN 1 0 Median NaN NaN NaN 0 0 Median 13125000 6344500 6780300 13125000 6344500 6780300 0 0 0 13929 1495 14311 36877 57801 57801 1 VFANPEDCVAFGK MLMSTATAFYRLTRKVFANPEDCVAFGKGE RKVFANPEDCVAFGKGENAKKYLRTDDRVE K V F G K G 2 0 1 1 1 0 1 1 0 0 0 1 0 2 1 0 0 0 0 2 0 0 13 0 1452.6708 Q6LET6;A0A024RAX2;P10620;F5H7F6;F5H6X2 Q6LET6 43 55 MGST1 Microsomal glutathione S-transferase 1 yes no 2 0.0030752 51.162 1 1.1179 1.1246 NaN 1 Median 1.1179 1.1246 NaN 1 0 Median NaN NaN NaN 0 0 Median 18541000 9288600 9252600 18541000 9288600 9252600 0 0 0 13930 315 14312 36878 57802 57802 1 VFASELNAGIIK WDSLRSGPASTFNDRVFASELNAGIIKTDQ NDRVFASELNAGIIKTDQNYEKMMFKEALK R V F I K T 2 0 1 0 0 0 1 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 12 0 1260.7078 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;Q9NVP8;Q9NVC0 B4E266 750 761 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.00011876 94.692 3 1.6426 1.6955 13.153 2 Median 1.6426 1.6955 13.153 2 0 Median NaN NaN NaN 0 0 Median 37954000 12569000 25385000 37954000 12569000 25385000 0 0 0 13931 883 14313 36879;36880;36881 57803;57804;57805 57803 3 VFCVEEEDSESSLQK KLLEKTNLEKEKGSRVFCVEEEDSESSLQK VFCVEEEDSESSLQKRRRKKKKKHHLQPEN R V F Q K R 0 0 0 1 1 1 4 0 0 0 1 1 0 1 0 3 0 0 0 2 0 0 15 0 1784.7775 Q14684 Q14684 384 398 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 4.2164E-07 104.07 2 2 1.2709 1.1337 16.534 4 Median 0.93765 0.98397 6.5696 2 0 Median 1.6281 1.2939 5.2314 2 0 Median 63447000 28833000 34614000 35885000 19423000 16461000 27562000 9409400 18153000 13932 1740 14314 36882;36883;36884;36885 57806;57807;57808;57809;57810;57811;57812 57808 7 VFDAIMNFK LPRTFCQLILDPIFKVFDAIMNFKKEETAK LDPIFKVFDAIMNFKKEETAKLIEKLDIKL K V F F K K 1 0 1 1 0 0 0 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 9 0 1083.5423 P13639;Q6PK56;B4DRE8;B4DMC6 P13639 300 308 EEF2 Elongation factor 2 yes no 2 0.0015341 72.485 2 1 4.9577 5.5962 92.29 3 Median 5.1639 5.81 5.3025 2 0 Median 1.3288 1.1763 NaN 1 0 Median 135500000 23478000 112020000 134670000 23087000 111580000 835130 391500 443630 13933 1478 14315 36886;36887;36888 57813;57814;57815;57816;57817 57814 1234 5 VFDFLVDSINK ACYTRDALAKALHARVFDFLVDSINKAMEK LHARVFDFLVDSINKAMEKDHEEYNIGVLD R V F N K A 0 0 1 2 0 0 0 0 0 1 1 1 0 2 0 1 0 0 0 2 0 0 11 0 1295.6762 Q4KMR3;Q12965;H0YLE5 Q4KMR3 363 373 MYO1E Unconventional myosin-Ie yes no 2 2.3128E-05 103.7 3 2 1.4104 1.1286 23.646 3 Median 0.69085 0.75803 NaN 1 0 Median 1.4456 1.1412 1.5741 2 0 Median 49171000 27235000 21936000 41283000 24147000 17136000 7888400 3088200 4800100 13934 1703 14316 36889;36890;36891;36892;36893 57818;57819;57820;57821;57822 57819 5 VFDGIPPPYDK PHKTKRGQAALDHLKVFDGIPPPYDKKKRM DHLKVFDGIPPPYDKKKRMVVPAALKVVRL K V F D K K 0 0 0 2 0 0 0 1 0 1 0 1 0 1 3 0 0 0 1 1 0 0 11 0 1246.6234 Q53H34;P40429;Q9BSQ6;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q6NVV1 Q53H34 104 114 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 0.0003695 83.869 2 2 0.88809 0.87575 17.408 4 Median 0.86275 1.0197 0.69001 2 0 Median 0.91761 0.75436 0.26438 2 0 Median 984030000 513190000 470840000 917430000 478360000 439070000 66598000 34828000 31769000 13935 1558 14317 36894;36895;36896;36897 57823;57824;57825;57826;57827;57828;57829;57830;57831;57832;57833;57834;57835;57836;57837 57823 15 VFDLLNRK ELQVYATFFEIYSGKVFDLLNRKTKLRVLE FEIYSGKVFDLLNRKTKLRVLEDGKQQVQV K V F R K T 0 1 1 1 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 8 1 1003.5815 B0AZS5;O00139;B4DM85 B0AZS5 328 335 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 3 0.033771 42.109 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7826600 7826600 0 7826600 7826600 0 0 0 0 13936 804 14318 36898;36899 57838;57839 57838 2 VFDLQFSTDSPR QNDDEKERLQRRRSRVFDLQFSTDSPRLLA RSRVFDLQFSTDSPRLLASPSSRSIDISAT R V F P R L 0 1 0 2 0 1 0 0 0 0 1 0 0 2 1 2 1 0 0 1 0 0 12 0 1410.6779 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470;C9JZP1 A8K4T8 72 83 NCAPH Condensin complex subunit 2 yes no 2 1.3083E-05 106.62 2 2 1.6654 1.624 4.2898 4 Median 1.4246 1.603 6.0229 2 0 Median 1.9119 1.624 4.1522 2 0 Median 248530000 82525000 166010000 201690000 67093000 134600000 46845000 15432000 31412000 13937 740 14319 36900;36901;36902;36903 57840;57841;57842;57843;57844;57845;57846;57847;57848 57846 9 VFDMLNR LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI IIVGTPGRVFDMLNRRYLSPKYIKMFVLDE R V F N R R 0 1 1 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 7 0 893.44292 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;J3QR64;J3KSZ0;E7EQG2;Q14240;J3QLN6;J3QKZ9;B4E047;J3KS25;Q9NZE6;B4DJX6 A8K7F6 162 168 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 0.0081607 92.191 2 3.1622 3.5004 NaN 1 Median 3.1622 3.5004 NaN 1 0 Median NaN NaN NaN 0 0 Median 101960000 17462000 84502000 101960000 17462000 84502000 0 0 0 13938 770 14320 36904;36905 57849;57850 57850 602 2 VFDPVPVGVTK ILPLHSQIPREEQRKVFDPVPVGVTKVILS EQRKVFDPVPVGVTKVILSTNIAETSITIN K V F T K V 0 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 1 0 0 4 0 0 11 0 1156.6492 Q08211 Q08211 698 708 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00036932 83.883 2 2 1.4452 1.595 11.379 4 Linear 1.3402 1.542 3.2173 2 0 Median 1.5856 1.2729 3.1834 2 0 Median 501030000 220600000 280440000 460350000 205530000 254820000 40684000 15070000 25614000 13939 1691 14321 36906;36907;36908;36909 57851;57852;57853;57854;57855;57856;57857;57858 57851 8 VFEEDALSWEDK HINSVSAMKLSPYYKVFEEDALSWEDKLNR YYKVFEEDALSWEDKLNRIMALFDVWIDVQ K V F D K L 1 0 0 2 0 0 3 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 12 0 1466.6565 Q14204 Q14204 1515 1526 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00065451 86.624 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3241500 0 3241500 3241500 0 3241500 0 0 0 13940 1729 14322 36910 57859 57859 1 VFELDLVTLR ETLKTQIEEMARSLKVFELDLVTLRSEKEN ARSLKVFELDLVTLRSEKENLTKQIQEKQG K V F L R S 0 1 0 1 0 0 1 0 0 0 3 0 0 1 0 0 1 0 0 2 0 0 10 0 1203.6863 P49454 P49454 2296 2305 CENPF Centromere protein F yes yes 2 4.6591E-08 116.52 2 2 1.227 1.1453 18.295 4 Median 0.98639 1.0038 0.8991 2 0 Median 1.5505 1.3664 7.2154 2 0 Median 26996000 13568000 13428000 22828000 11962000 10866000 4167600 1606300 2561400 13941 1581 14323 36911;36912;36913;36914 57860;57861;57862;57863;57864;57865;57866 57861 7 VFEVNASNLEK KKIEKEIQQKWDTERVFEVNASNLEKQTSK DTERVFEVNASNLEKQTSKGKYFVTFPYPY R V F E K Q 1 0 2 0 0 0 2 0 0 0 1 1 0 1 0 1 0 0 0 2 0 0 11 0 1248.635 B4E266;B4DER1;B2RCM2;Q9P2J5;Q6NVI4;Q0VGM8;Q9P0T1;A0A087WXY1 B4E266 29 39 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.0058544 55.461 2 1.0694 0.8496 NaN 1 Median NaN NaN NaN 0 0 Median 1.0694 0.8496 NaN 1 0 Median 4815300 1468900 3346400 0 0 0 4815300 1468900 3346400 13942 883 14324 36915;36916 57867;57868;57869 57869 3 VFEVSLADLQNDEVAFR RTQGTKIASDGLKGRVFEVSLADLQNDEVA EVSLADLQNDEVAFRKFKLITEDVQGKNCL R V F F R K 2 1 1 2 0 1 2 0 0 0 2 0 0 2 0 1 0 0 0 3 0 0 17 0 1950.9687 Q6NXR8;A8K4W0;P61247;D6RG13;B7Z3M5;H0Y8L7;E9PFI5;D6RAT0;D6RB09;D6RAS7;D6RED7;D6RI02;D6RGE0 Q6NXR8 66 82 RPS3A 40S ribosomal protein S3a yes no 2 4.0078E-95 216.68 4 2 0.90408 0.91443 20.081 4 Median 0.9189 1.079 0.80554 2 0 Median 0.87716 0.7631 2.9829 2 0 Median 1221500000 634190000 587310000 898670000 460850000 437820000 322830000 173340000 149490000 13943 742 14325 36917;36918;36919;36920;36921;36922 57870;57871;57872;57873;57874;57875;57876;57877;57878;57879;57880;57881;57882;57883;57884;57885 57885 16 VFEVSLADLQNDEVAFRK RTQGTKIASDGLKGRVFEVSLADLQNDEVA VSLADLQNDEVAFRKFKLITEDVQGKNCLT R V F R K F 2 1 1 2 0 1 2 0 0 0 2 1 0 2 0 1 0 0 0 3 0 0 18 1 2079.0637 Q6NXR8;A8K4W0;P61247;D6RG13;B7Z3M5;H0Y8L7;E9PFI5;D6RAT0;D6RB09;D6RAS7;D6RED7;D6RI02;D6RGE0 Q6NXR8 66 83 RPS3A 40S ribosomal protein S3a yes no 3 4.9773E-17 117.26 2 2 1.0186 0.99054 24.947 4 Median 1.1364 1.2559 11.089 2 0 Median 0.95717 0.82799 2.8658 2 0 Median 103750000 52462000 51289000 31949000 14999000 16950000 71802000 37463000 34339000 13944 742 14326 36923;36924;36925;36926 57886;57887;57888;57889;57890;57891;57892;57893 57891 8 VFFTCNACGESVK ______________________________ ______________________________ M V F V K K 1 0 1 0 2 0 1 1 0 0 0 1 0 2 0 1 1 0 0 2 0 0 13 0 1517.6643 Q9NX58;A8K3Y5;D6RDJ1 Q9NX58 2 14 LYAR Cell growth-regulating nucleolar protein yes no 2 5.3239E-06 105.98 2 2 0.86603 0.76734 18.692 4 Median 0.65686 0.65595 4.0662 2 0 Median 1.1239 0.90135 4.6484 2 0 Median 94798000 52759000 42039000 51660000 32769000 18891000 43138000 19990000 23148000 13945 2079 14327 36927;36928;36929;36930 57894;57895;57896;57897;57898;57899;57900;57901;57902;57903 57902 10 VFGAAPLENVVR IVLCISPSKPNPVFKVFGAAPLENVVRKYK VFKVFGAAPLENVVRKYKSMILEDLESALA K V F V R K 2 1 1 0 0 0 1 1 0 0 1 0 0 1 1 0 0 0 0 3 0 0 12 0 1270.7034 C9JP85;A0A024R770;A0A024R774;Q16656 C9JP85 146 157 NRF1 Nuclear respiratory factor 1 yes no 2 0.0056194 63.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13946 216 14328 36931 57904 57904 1 VFGAPEVLENLEVK AEILLSNHYTSSEIRVFGAPEVLENLEVKS RVFGAPEVLENLEVKSGSPAVLAFAKEKSF R V F V K S 1 0 1 0 0 0 3 1 0 0 2 1 0 1 1 0 0 0 0 3 0 0 14 0 1542.8294 Q8TEM1 Q8TEM1 1711 1724 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 5.7533E-05 91.937 1 1 0.80242 0.72507 2.6794 2 Median 0.69872 0.71146 NaN 1 0 Median 0.92152 0.73894 NaN 1 0 Median 33693000 21012000 12681000 30650000 19169000 11481000 3043500 1843300 1200100 13947 1937 14329 36932;36933 57905;57906;57907 57906 3 VFGNEIK SAEDLEKALELTGLKVFGNEIKLEKPKGKD ALELTGLKVFGNEIKLEKPKGKDSKKERDA K V F I K L 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 805.4334 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 294 300 NCL Nucleolin yes no 2 0.03754 60.799 1 0.97806 1.1213 NaN 1 Median 0.97806 1.1213 NaN 1 0 Median NaN NaN NaN 0 0 Median 166030000 79792000 86236000 166030000 79792000 86236000 0 0 0 13948 151 14330 36934 57908 57908 1 VFHLPTTTFIGGQESALPLR TVGGFYGLDESDLDKVFHLPTTTFIGGQES TTTFIGGQESALPLREIIRRLEMAYCQHIG K V F L R E 1 1 0 0 0 1 1 2 1 1 3 0 0 2 2 1 3 0 0 1 0 0 20 0 2183.1739 B4DF00;E9PDF2;E9PCR7;Q02218;B4DH65;A0A0D9SFS3;C9J4G7;A0A140VJQ5;A2VCT2;A2VCT3 B4DF00 136 155 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 3 1.7771E-05 46.494 1 2 0.7317 0.61524 31.547 3 Median 1.0518 1.0554 NaN 1 0 Median 0.70893 0.61115 0.94264 2 0 Median 16031000 9976200 6055200 9198000 5900400 3297600 6833400 4075800 2757600 13949 968 14331 36935;36936;36937 57909;57910;57911 57909 3 VFIGNLNTALVK SNVTNKNDPKSINSRVFIGNLNTALVKKSD NSRVFIGNLNTALVKKSDVETIFSKYGRVA R V F V K K 1 0 2 0 0 0 0 1 0 1 2 1 0 1 0 0 1 0 0 2 0 0 12 0 1287.7551 A8K4T9;Q53GL6;Q5QPL9;Q9UKM9;Q5QPM0;Q5QPM1;Q5QPM2;B4DSJ1 A8K4T9 23 34 RALY RNA-binding protein Raly yes no 2 1.174E-05 107.24 2 2 0.73305 0.69773 45.764 4 Median 0.91134 1.0275 2.7554 2 0 Median 0.58299 0.46606 5.0831 2 0 Median 237790000 129790000 108000000 201620000 106330000 95288000 36174000 23459000 12715000 13950 741 14332 36938;36939;36940;36941 57912;57913;57914;57915;57916;57917;57918 57913 7 VFIGNLNTLVVK SNVTNKTDPRSMNSRVFIGNLNTLVVKKSD NSRVFIGNLNTLVVKKSDVEAIFSKYGKIV R V F V K K 0 0 2 0 0 0 0 1 0 1 2 1 0 1 0 0 1 0 0 3 0 0 12 0 1315.7864 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V555;G3V575;D3DPI2;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8;B4DMJ1;B4DSU6;G3V4M8;G3V2H6;Q569J8;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V5X6;G3V3K6;G3V251 G3V4W0 18 29 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 2 0.00013815 93.556 3 2 0.81388 0.82352 51.996 4 Median 1.0906 1.2948 0.73742 2 0 Median 0.61079 0.52613 0.10614 2 0 Median 1712600000 830860000 881760000 1467500000 681310000 786190000 245120000 149550000 95573000 13951 837;781 14333 36942;36943;36944;36945;36946 57919;57920;57921;57922;57923;57924;57925 57925 7 VFLALAAK YSPKMQLVCCRAIVKVFLALAAKGPVLRNC CCRAIVKVFLALAAKGPVLRNCISTVVHQG K V F A K G 3 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 8 0 831.52182 P78527;B4DL41 P78527 464 471 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.02092 58.167 1 0.68852 0.72863 NaN 1 Median 0.68852 0.72863 NaN 1 0 Median NaN NaN NaN 0 0 Median 31209000 18519000 12690000 31209000 18519000 12690000 0 0 0 13952 1665 14334 36947 57926;57927 57926 2 VFLDFFTYAPPK MAQKEAVIKHSLVHKVFLDFFTYAPPKLRS VHKVFLDFFTYAPPKLRSEMIEAIREAVVY K V F P K L 1 0 0 1 0 0 0 0 0 0 1 1 0 3 2 0 1 0 1 1 0 0 12 0 1443.7438 Q15397;B2RDG4 Q15397 331 342 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 2.6269E-05 100.48 2 0.78067 0.7974 4.5326 2 Median 0.78067 0.7974 4.5326 2 0 Median NaN NaN NaN 0 0 Median 43466000 23338000 20128000 43466000 23338000 20128000 0 0 0 13953 1761 14335 36948;36949 57928;57929;57930 57929 3 VFLDVLMK FEVLKRNGWEESRIKVFLDVLMKEVLCPES WEESRIKVFLDVLMKEVLCPESQSPNGVRF K V F M K E 0 0 0 1 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 8 0 963.54633 Q14684;Q6PJM8 Q14684 144 151 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 0.0064077 65.038 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9560300 9560300 0 9560300 9560300 0 0 0 0 13954 1740 14336 36950 57931;57932 57932 1578 2 VFLENVIR RISGLIYEETRGVLKVFLENVIRDAVTYTE ETRGVLKVFLENVIRDAVTYTEHAKRKTVT K V F I R D 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 8 0 988.57057 B2R4R0;P62805;Q0VAS5;Q6B823 B2R4R0 61 68 HIST1H4H;HIST1H4A Histone H4 yes no 2 5.2436E-41 192.31 107 31 0.69143 0.98138 11.812 66 Linear 0.68626 0.79206 9.3423 47 0 Plateau 0.76456 0.64389 10.014 19 0 Median 46265000000 44012000000 2253000000 42476000000 40254000000 2221700000 3789000000 3757700000 31355000 13955 828 14337 36951;36952;36953;36954;36955;36956;36957;36958;36959;36960;36961;36962;36963;36964;36965;36966;36967;36968;36969;36970;36971;36972;36973;36974;36975;36976;36977;36978;36979;36980;36981;36982;36983;36984;36985;36986;36987;36988;36989;36990;36991;36992;36993;36994;36995;36996;36997;36998;36999;37000;37001;37002;37003;37004;37005;37006;37007;37008;37009;37010;37011;37012;37013;37014;37015;37016;37017;37018;37019;37020;37021;37022;37023;37024;37025;37026;37027;37028;37029;37030;37031;37032;37033;37034;37035;37036;37037;37038;37039;37040;37041;37042;37043;37044;37045;37046;37047;37048;37049;37050;37051;37052;37053;37054;37055;37056;37057;37058;37059;37060;37061;37062;37063;37064;37065;37066;37067;37068;37069;37070;37071;37072;37073;37074;37075;37076;37077;37078;37079;37080;37081;37082;37083;37084;37085;37086;37087;37088 57933;57934;57935;57936;57937;57938;57939;57940;57941;57942;57943;57944;57945;57946;57947;57948;57949;57950;57951;57952;57953;57954;57955;57956;57957;57958;57959;57960;57961;57962;57963;57964;57965;57966;57967;57968;57969;57970;57971;57972;57973;57974;57975;57976;57977;57978;57979;57980;57981;57982;57983;57984;57985;57986;57987;57988;57989;57990;57991;57992;57993;57994;57995;57996;57997;57998;57999;58000;58001;58002;58003;58004;58005;58006;58007;58008;58009;58010;58011;58012;58013;58014;58015;58016;58017;58018;58019;58020;58021;58022;58023;58024;58025;58026;58027;58028;58029;58030;58031;58032;58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043;58044;58045;58046;58047;58048;58049;58050;58051;58052;58053;58054;58055;58056;58057;58058;58059;58060;58061;58062;58063;58064;58065;58066;58067;58068;58069;58070;58071;58072;58073;58074;58075;58076;58077;58078;58079;58080;58081;58082;58083;58084;58085;58086;58087;58088;58089;58090;58091;58092;58093;58094;58095;58096;58097;58098;58099;58100;58101;58102;58103;58104;58105;58106;58107;58108;58109;58110;58111;58112;58113;58114;58115;58116;58117;58118;58119;58120;58121;58122;58123;58124;58125;58126;58127;58128;58129;58130;58131;58132;58133;58134;58135;58136;58137;58138;58139;58140;58141;58142;58143;58144;58145;58146;58147;58148;58149;58150;58151;58152;58153;58154;58155;58156;58157;58158;58159;58160;58161;58162;58163;58164;58165;58166;58167;58168;58169;58170;58171;58172;58173;58174;58175;58176;58177;58178;58179;58180;58181;58182;58183;58184;58185;58186;58187;58188;58189;58190;58191;58192;58193;58194;58195;58196;58197;58198;58199;58200;58201;58202;58203;58204;58205;58206;58207;58208;58209;58210;58211;58212;58213;58214;58215;58216;58217;58218;58219;58220;58221;58222;58223;58224;58225;58226;58227;58228;58229;58230;58231;58232;58233;58234;58235;58236;58237;58238;58239;58240;58241;58242;58243;58244;58245;58246;58247;58248;58249;58250;58251;58252;58253;58254;58255;58256;58257;58258;58259;58260;58261;58262;58263;58264;58265;58266;58267 57994 335 VFLENVIRDAVTYTEHAK RISGLIYEETRGVLKVFLENVIRDAVTYTE ENVIRDAVTYTEHAKRKTVTAMDVVYALKR K V F A K R 2 1 1 1 0 0 2 0 1 1 1 1 0 1 0 0 2 0 1 3 0 0 18 1 2104.0953 B2R4R0;P62805;Q0VAS5 B2R4R0 61 78 HIST1H4H;HIST1H4A Histone H4 yes no 3;4 0.00016327 46.159 1 6 0.87852 0.74452 19.395 6 Median NaN NaN NaN 0 0 Median 0.87852 0.74452 19.395 6 0 Median 61000000 35207000 25793000 7274200 7274200 0 53725000 27933000 25793000 13956 828 14338 37089;37090;37091;37092;37093;37094;37095 58268;58269;58270;58271;58272;58273;58274;58275;58276;58277 58271 10 VFLHLADIYAK TKVFERAVQYNEPLKVFLHLADIYAKSEKF EPLKVFLHLADIYAKSEKFQEAGELYNRML K V F A K S 2 0 0 1 0 0 0 0 1 1 2 1 0 1 0 0 0 0 1 1 0 0 11 0 1288.718 Q14690 Q14690 1693 1703 PDCD11 Protein RRP5 homolog yes yes 2 0.00026127 90.15 2 1 1.2469 1.2896 NaN 1 Median 1.2469 1.2896 NaN 1 0 Median NaN NaN NaN 0 0 Median 19194000 5301100 13893000 17230000 5301100 11929000 1964500 0 1964500 13957 1741 14339 37096;37097;37098 58278;58279;58280;58281 58279 4 VFLLGEEVAQYDGAYK AINQGMDEELERDEKVFLLGEEVAQYDGAY FLLGEEVAQYDGAYKVSRGLWKKYGDKRII K V F Y K V 2 0 0 1 0 1 2 2 0 0 2 1 0 1 0 0 0 0 2 2 0 0 16 0 1800.8934 P11177;F8WF02;C9J634 P11177 53 68 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 0.039481 36.982 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11842000 0 11842000 11842000 0 11842000 0 0 0 13958 1468 14340 37099;37100 58282;58283 58283 2 VFLMSESEK YIGSAGKPHERVEQKVFLMSESEKRKKLLA ERVEQKVFLMSESEKRKKLLAILEQGFDPP K V F E K R 0 0 0 0 0 0 2 0 0 0 1 1 1 1 0 2 0 0 0 1 0 0 9 0 1068.5161 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 623 631 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.019851 42.599 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2576700 0 2576700 2576700 0 2576700 0 0 0 13959 63 14341 37101 58284 58284 36 1 VFLNGNK VRRAYDIAGSTKDVKVFLNGNKLPVKGFRS AGSTKDVKVFLNGNKLPVKGFRSYVDMYLK K V F N K L 0 0 2 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 790.43374 P11388 P11388 255 261 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.010895 109.88 2 1 0.74682 0.87409 15.702 3 Median 0.72928 0.84988 3.9709 2 0 Median 1.373 1.1106 NaN 1 0 Median 569340000 326210000 243120000 546180000 316060000 230120000 23157000 10156000 13001000 13960 1471 14342 37102;37103;37104 58285;58286;58287;58288;58289 58286 5 VFLNILPPLTNSK FTLSSVSGESLDLLKVFLNILPPLTNSKEQ LKVFLNILPPLTNSKEQEELMQQLTEFQVD K V F S K E 0 0 2 0 0 0 0 0 0 1 3 1 0 1 2 1 1 0 0 1 0 0 13 0 1454.8497 A0A024RD30;Q9BX10;A8K2K2 A0A024RD30 387 399 GTPBP2 GTP-binding protein 2 yes no 2 0.00011166 78.655 2 1.3895 1.5002 27.421 2 Median 1.3895 1.5002 27.421 2 0 Median NaN NaN NaN 0 0 Median 7143900 3384500 3759400 7143900 3384500 3759400 0 0 0 13961 377 14343 37105;37106 58290;58291 58290 2 VFLQYLPAIR DTRAPMAAQGMVETRVFLQYLPAIRALWAD MVETRVFLQYLPAIRALWADSGIQNAYDRR R V F I R A 1 1 0 0 0 1 0 0 0 1 2 0 0 1 1 0 0 0 1 1 0 0 10 0 1218.7125 B4DWV9;A0A024R8M0;Q14344 B4DWV9 116 125 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes no 2 0.0043044 65.038 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13962 251 14344 37107;37108 58292;58293 58293 2 VFLWGSFR SAGDSHTAALTDDGRVFLWGSFRDNNGVIG ALTDDGRVFLWGSFRDNNGVIGLLEPMKKS R V F F R D 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 0 1 0 1 0 0 8 0 1010.5338 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 140 147 RCC1 Regulator of chromosome condensation yes no 2 0.016899 60.799 2 0.92107 0.76997 13.831 2 Median NaN NaN NaN 0 0 Median 0.92107 0.76997 13.831 2 0 Median 10046000 5001500 5044300 0 0 0 10046000 5001500 5044300 13963 550 14345 37109;37110 58294;58295;58296;58297 58294 4 VFNCISYSPLCK DVESGSLKSTLTGNKVFNCISYSPLCKRLA GNKVFNCISYSPLCKRLASGSTDRHIRLWD K V F C K R 0 0 1 0 2 0 0 0 0 1 1 1 0 1 1 2 0 0 1 1 0 0 12 0 1486.6949 Q53T99;Q9GZL7;B4DRY7 Q53T99 299 310 WDR12 Ribosome biogenesis protein WDR12 yes no 2 0.0006581 67.726 2 2 1.0282 0.90762 15.099 4 Median 0.80016 0.79559 5.7539 2 0 Median 1.263 1.0234 4.099 2 0 Median 71028000 38839000 32189000 49073000 29269000 19804000 21954000 9569700 12385000 13964 1792 14346 37111;37112;37113;37114 58298;58299;58300;58301;58302 58298 5 VFNGEPGAHDAK LPFIPADKLKDLTSRVFNGEPGAHDAKLRF TSRVFNGEPGAHDAKLRFESQEMKGIGTPP R V F A K L 2 0 1 1 0 0 1 2 1 0 0 1 0 1 1 0 0 0 0 1 0 0 12 0 1240.5836 O96028;Q05CW4;D6R9V2;D6RIS1 O96028 86 97 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2;3 0.011722 54.094 1 2 1.7461 1.4471 14.373 3 Median 1.1588 1.2098 NaN 1 0 Median 1.8289 1.5252 7.4348 2 0 Median 15741000 6890000 8850500 11821000 5551900 6268800 3919800 1338200 2581700 13965 1435 14347 37115;37116;37117 58303;58304;58305 58305 3 VFNVFCLYGNVEK LMVYGLDQSKMNCDRVFNVFCLYGNVEKVK DRVFNVFCLYGNVEKVKFMKSKPGSAMVEM R V F E K V 0 0 2 0 1 0 1 1 0 0 1 1 0 2 0 0 0 0 1 3 0 0 13 0 1587.7755 B2R959;Q6NTA2;P14866;M0QXS5;M0QYT0;M0R076 B2R959 368 380 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 7.6261E-05 112.13 2 2 1.0175 0.91174 55.203 4 Median 1.3936 1.4088 9.2337 2 0 Median 0.68516 0.55362 18.249 2 0 Median 57875000 26208000 31667000 44524000 19001000 25523000 13352000 7207100 6144400 13966 865 14348 37118;37119;37120;37121 58306;58307;58308;58309;58310;58311;58312;58313;58314 58307 9 VFPGSTTEDYNLIVIER LDLDLTADSQPPVFKVFPGSTTEDYNLIVI PGSTTEDYNLIVIERGAAAAATGQPGTAPA K V F E R G 0 1 1 1 0 0 2 1 0 2 1 0 0 1 1 1 2 0 1 2 0 0 17 0 1951.9891 B2R8R5;Q13263;M0R0K9 B2R8R5 508 524 TRIM28 Transcription intermediary factor 1-beta yes no 2 6.0511E-08 120.14 2 2 1.268 1.1644 25.165 4 Median 1.3693 1.4538 12.028 2 0 Median 1.174 0.96275 7.5255 2 0 Median 104480000 44267000 60209000 75410000 31553000 43857000 29066000 12715000 16351000 13967 862 14349 37122;37123;37124;37125 58315;58316;58317;58318;58319;58320;58321;58322;58323;58324;58325 58320 11 VFPMPLPR ETRGHPHSASSPSERVFPMPLPRKAPLNIP ASSPSERVFPMPLPRKAPLNIPGTPVLEDF R V F P R K 0 1 0 0 0 0 0 0 0 0 1 0 1 1 3 0 0 0 0 1 0 0 8 0 955.53134 A8K4T8;Q15003;B4DRG7;E9PHA2;C9J470;C9JZP1 A8K4T8 33 40 NCAPH Condensin complex subunit 2 yes no 2 0.018276 58.167 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13968 740 14350 37126 58326 58326 576 1 VFPWFSVK ANSMVKSFFIRQMERVFPWFSVKKSRFWEP FIRQMERVFPWFSVKKSRFWEPNKVSSNSG R V F V K K 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 1 0 1 0 2 0 0 8 0 1008.5433 Q03164 Q03164 1765 1772 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.042651 46.426 1 0.83042 0.82354 NaN 1 Median 0.83042 0.82354 NaN 1 0 Median NaN NaN NaN 0 0 Median 8201800 5079700 3122100 8201800 5079700 3122100 0 0 0 13969 1680 14351 37127 58327 58327 1 VFQASPEDHEK DWIRHKFTRSRIPEKVFQASPEDHEKYGGD IPEKVFQASPEDHEKYGGDPQNPHKLHIVT K V F E K Y 1 0 0 1 0 1 2 0 1 0 0 1 0 1 1 1 0 0 0 1 0 0 11 0 1285.5939 B8ZZV5;Q8TCC3 B8ZZV5 45 55 MRPL30 39S ribosomal protein L30, mitochondrial yes no 2 0.0061204 54.982 1 1.2061 1.2181 NaN 1 Median 1.2061 1.2181 NaN 1 0 Median NaN NaN NaN 0 0 Median 8371200 3941900 4429300 8371200 3941900 4429300 0 0 0 13970 1118 14352 37128 58328;58329 58329 2 VFQFLNAK IYPGHGRRYARTDGKVFQFLNAKCESAFLS YARTDGKVFQFLNAKCESAFLSKRNPRQIN K V F A K C 1 0 1 0 0 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 965.53345 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 28 35 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 1;2 0.00069603 128.75 5 4 0.9138 0.89767 19.333 6 Median 0.67418 0.7817 2.7106 3 0 Median 1.3331 1.1674 9.7062 3 0 Plateau 5249500000 3037900000 2211600000 4689100000 2799400000 1889700000 560330000 238450000 321880000 13971 1140 14353 37129;37130;37131;37132;37133;37134;37135;37136;37137 58330;58331;58332;58333;58334;58335;58336;58337;58338;58339;58340;58341;58342;58343;58344;58345;58346;58347;58348;58349;58350;58351;58352;58353;58354;58355;58356;58357;58358;58359;58360 58338 30 VFQGFFTGR SKQNLVPFRDSKLTRVFQGFFTGRGRSCMI DSKLTRVFQGFFTGRGRSCMIVNVNPCAST R V F G R G 0 1 0 0 0 1 0 2 0 0 0 0 0 3 0 0 1 0 0 1 0 0 9 0 1057.5345 O95235 O95235 467 475 KIF20A Kinesin-like protein KIF20A yes yes 2 3.4564E-17 153.04 1 2 1.2631 1.0367 3.8343 2 Median NaN NaN NaN 0 0 Median 1.2631 1.0367 3.8343 2 0 Median 105550000 88861000 16685000 75451000 75451000 0 30095000 13410000 16685000 13972 1421 14354 37138;37139;37140 58361;58362;58363 58361 3 VFQSSTSQEQVYNDCAK EDTVVIASKPYAFDRVFQSSTSQEQVYNDC QSSTSQEQVYNDCAKKIVKDVLEGYNGTIF R V F A K K 1 0 1 1 1 3 1 0 0 0 0 1 0 1 0 3 1 0 1 2 0 0 17 0 1989.8738 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89;Q6P164;Q2TA90;Q66K46 V9HW29 51 67 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.0018751 55.261 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2305400 0 2305400 2305400 0 2305400 0 0 0 13973 1186 14355 37141 58364;58365 58365 2 VFQTEAELQEVISDLQSK QLTDENQSCCPVCQRVFQTEAELQEVISDL TEAELQEVISDLQSKLRLAPDKLKSTESEL R V F S K L 1 0 0 1 0 3 3 0 0 1 2 1 0 1 0 2 1 0 0 2 0 0 18 0 2063.0423 Q92878;E7EN38;Q32P42 Q92878 687 704 RAD50 DNA repair protein RAD50 yes no 2 2.0298E-16 123.02 2 0.79535 0.82506 6.122 2 Median 0.79535 0.82506 6.122 2 0 Median NaN NaN NaN 0 0 Median 34108000 18782000 15327000 34108000 18782000 15327000 0 0 0 13974 1953 14356 37142;37143 58366;58367;58368 58367 2 VFSATLGLVDIVK SGLEHSAHVLEKGGKVFSATLGLVDIVKGT GKVFSATLGLVDIVKGTNSYYKLQLLEDDK K V F V K G 1 0 0 1 0 0 0 1 0 1 2 1 0 1 0 1 1 0 0 3 0 0 13 0 1360.7966 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 552 564 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 6.7586E-09 118.4 3 2 0.56028 0.65381 1.767 2 Median 0.56028 0.65381 1.767 2 0 Median NaN NaN NaN 0 0 Median 657070000 363470000 293600000 580430000 363470000 216970000 76640000 0 76640000 13975 139 14357 37144;37145;37146;37147;37148 58369;58370;58371;58372;58373;58374;58375;58376;58377 58369 9 VFSDEVQQQAQLSTIR VHPNYHKEPFLQQLKVFSDEVQQQAQLSTI FSDEVQQQAQLSTIRSFLKLYTTMPVAKLA K V F I R S 1 1 0 1 0 4 1 0 0 1 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1847.9377 Q8N7H0;B3KNG0;B0QY90;B4DQF6;B3KPB9;B0QY89;Q9Y262;Q7Z5X3 Q8N7H0 179 194 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 7.3092E-19 128.54 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12210000 0 12210000 12210000 0 12210000 0 0 0 13976 806 14358 37149;37150 58378;58379;58380 58378 3 VFSGLVSTGLK MVPTSDKGRFYAFGRVFSGLVSTGLKVRIM AFGRVFSGLVSTGLKVRIMGPNYTPGKKED R V F L K V 0 0 0 0 0 0 0 2 0 0 2 1 0 1 0 2 1 0 0 2 0 0 11 0 1106.6336 P13639;Q8TA90;Q6PK56;B4DRE8 P13639 416 426 EEF2 Elongation factor 2 yes no 2 0.00033611 78.098 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13977 1478 14359 37151 58381 58381 1 VFSIGPVFR PQLYKQMCICADFEKVFSIGPVFRAEDSNT CADFEKVFSIGPVFRAEDSNTHRHLTEFVG K V F F R A 0 1 0 0 0 0 0 1 0 1 0 0 0 2 1 1 0 0 0 2 0 0 9 0 1020.5757 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 232 240 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0016482 82.671 2 2 1.126 1.067 56.382 4 Median 1.6052 1.7274 6.2386 2 0 Median 0.76509 0.65367 7.395 2 0 Median 87415000 34057000 53358000 81711000 30966000 50745000 5704300 3091300 2613000 13978 610 14360 37152;37153;37154;37155 58382;58383;58384;58385;58386;58387;58388;58389 58383 8 VFSLLQK CCSSLKETHFPFAIRVFSLLQKKIKKLESV THFPFAIRVFSLLQKKIKKLESVITAVEIP R V F Q K K 0 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 7 0 833.50109 B2RWN5;Q9H583;Q5T3Q7;A2VDI1 B2RWN5 729 735 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.011987 106.85 1 2 1.1667 0.98437 13.825 3 Median 1.0659 1.1916 NaN 1 0 Median 1.1803 0.94693 5.4831 2 0 Median 127130000 61406000 65721000 104270000 50722000 53551000 22855000 10684000 12171000 13979 897 14361 37156;37157;37158 58390;58391;58392;58393 58391 4 VFSLSSEFK NQLLKPTLSEIELFRVFSLSSEFKNITVRE EIELFRVFSLSSEFKNITVREEEKLELQKL R V F F K N 0 0 0 0 0 0 1 0 0 0 1 1 0 2 0 3 0 0 0 1 0 0 9 0 1042.5335 O75643;A4FU77;Q9H8B9 O75643 1017 1025 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 3.8853E-06 117.04 2 1 0.92916 0.88744 22.643 2 Median 0.93211 1.0415 NaN 1 0 Median 0.92621 0.75615 NaN 1 0 Median 140390000 51454000 88932000 135690000 48894000 86793000 4699400 2560000 2139400 13980 1411 14362 37159;37160;37161 58394;58395;58396;58397 58394 4 VFTSWTGGGAAASR SCSATGTNRSDQYGRVFTSWTGGGAAASRL RVFTSWTGGGAAASRLSDWLDPASTGAQFI R V F S R L 3 1 0 0 0 0 0 3 0 0 0 0 0 1 0 2 2 1 0 1 0 0 14 0 1366.663 CON__P15636 CON__P15636 435 448 yes yes 2;3 1.0867E-31 153.54 24 5 2.0598 2.0579 NaN 1 Median 2.0598 2.0579 NaN 1 0 Median NaN NaN NaN 0 0 Median 35889000000 35878000000 10501000 33705000000 33695000000 10501000 2183400000 2183400000 0 + 13981 1163 14363 37162;37163;37164;37165;37166;37167;37168;37169;37170;37171;37172;37173;37174;37175;37176;37177;37178;37179;37180;37181;37182;37183;37184;37185;37186;37187;37188;37189;37190 58398;58399;58400;58401;58402;58403;58404;58405;58406;58407;58408;58409;58410;58411;58412;58413;58414;58415;58416;58417;58418;58419;58420;58421;58422;58423;58424;58425;58426;58427;58428;58429;58430 58399 32 VFTTQELVQAFTHAPATLEADR TLKETFLTSPEELYRVFTTQELVQAFTHAP VQAFTHAPATLEADRGGKFHMVDGNVSGEF R V F D R G 4 1 0 1 0 2 2 0 1 0 2 0 0 2 1 0 4 0 0 2 0 0 22 0 2444.2336 H0YJ63;G3V438;H0YJG7;O95433 H0YJ63 27 48 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 3 1.6798E-07 54.008 1 2.3757 2.388 NaN 1 Median 2.3757 2.388 NaN 1 0 Median NaN NaN NaN 0 0 Median 9273700 3650400 5623300 9273700 3650400 5623300 0 0 0 13982 1273 14364 37191 58431 58431 1 VFTTVGSAEK VGQAAIAIALSLGCRVFTTVGSAEKRAYLQ SLGCRVFTTVGSAEKRAYLQARFPQLDSTS R V F E K R 1 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 2 0 0 2 0 0 10 0 1037.5393 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1693 1702 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.015795 66.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6851300 6851300 0 6851300 6851300 0 0 0 0 13983 587 14365 37192 58432 58432 1 VFVEDDENSSQK KTPQAPFPTCPNRKKVFVEDDENSSQKRSV RKKVFVEDDENSSQKRSVIVCQSRNEAQGK K V F Q K R 0 0 1 2 0 1 2 0 0 0 0 1 0 1 0 2 0 0 0 2 0 0 12 0 1395.6154 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 135 146 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 0.00024208 87.298 1 0.61978 0.63922 NaN 1 Median 0.61978 0.63922 NaN 1 0 Median NaN NaN NaN 0 0 Median 11517000 6200200 5316500 11517000 6200200 5316500 0 0 0 13984 2109 14366 37193 58433;58434 58433 2 VFVGGLSPDTSEEQIK PKRAKALKGKEPPKKVFVGGLSPDTSEEQI FVGGLSPDTSEEQIKEYFGAFGEIENIELP K V F I K E 0 0 0 1 0 1 2 2 0 1 1 1 0 1 1 2 1 0 0 2 0 0 16 0 1704.857 B4DTA2;A0A087WUK2;A0A024RDF6;O14979 B4DTA2 86 101 HNRNPDL;HNRPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2 4.6387E-12 116.03 2 2 2.4359 2.1811 55.232 4 Median 3.508 3.6547 14.851 2 0 Median 1.8193 1.4209 2.4551 2 0 Median 59078000 16590000 42488000 52377000 14271000 38106000 6701100 2319400 4381700 13985 385 14367 37194;37195;37196;37197 58435;58436;58437;58438;58439 58437 5 VFVLDEADVMIATQGHQDQSIR DWCSKLKFIDPKKIKVFVLDEADVMIATQG DVMIATQGHQDQSIRIQRMLPRNCQMLLFS K V F I R I 2 1 0 3 0 3 1 1 1 2 1 0 1 1 0 1 1 0 0 3 0 0 22 0 2471.2115 I3L0H8;Q2NL95;Q53G16;F6QDS0;A0A0U4B4U6;H3BQK0;Q9NUU7;Q9UMR2;Q59FQ9;Q68DY7;B4DL69;Q69YM2;A0A024QZ90;I3L352;B4DS24;Q9HBZ9;Q7Z4W5;H3BN59 I3L0H8 206 227 DDX19A;DDX19B;DKFZp686C21137;hCG_1998531;DKFZp762C1313 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 3 2.2294E-09 80.236 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13986 593 14368 37198 58440 58440 453 1 VFWDPSVNLFGHVGSTTASR MGFGNLNKVVLCFDRVFWDPSVNLFGHVGS SVNLFGHVGSTTASRGELFLFWNLYKAPIL R V F S R G 1 1 1 1 0 0 0 2 1 0 1 0 0 2 1 3 2 1 0 3 0 0 20 0 2176.0702 A8K2R3;O60341;R4GMP9 A8K2R3 547 566 KDM1A Lysine-specific histone demethylase 1A yes no 3 0.0087232 30.094 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3832200 0 3832200 0 0 0 3832200 0 3832200 13987 711 14369 37199;37200 58441;58442 58441 2 VFYTGQVVK PKHELSTEYIPDPERVFYTGQVVKVVVLNC IPDPERVFYTGQVVKVVVLNCEPSKERMLL R V F V K V 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 1 3 0 0 9 0 1039.5702 Q14690;B4DH82;B4DES7 Q14690 585 593 PDCD11 Protein RRP5 homolog yes no 2 0.002013 77.923 2 2 1.2544 1.1686 12.294 4 Median 1.1603 1.3082 4.699 2 0 Median 1.3286 1.0639 1.9992 2 0 Median 161520000 74062000 87457000 138760000 64502000 74255000 22762000 9560400 13202000 13988 1741 14370 37201;37202;37203;37204 58443;58444;58445;58446;58447;58448 58445 6 VFYYLVQDLK SLIDVNQSKDPEGLRVFYYLVQDLKCLVFS PEGLRVFYYLVQDLKCLVFSLIGLHFKIKP R V F L K C 0 0 0 1 0 1 0 0 0 0 2 1 0 1 0 0 0 0 2 2 0 0 10 0 1286.6911 F5H6P7;A0A023T6R1;P61326;Q96A72 F5H6P7 77 86 MAGOHB;FLJ10292;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 yes no 2 0.051358 67.507 1 1.5881 1.6419 NaN 1 Median 1.5881 1.6419 NaN 1 0 Median NaN NaN NaN 0 0 Median 9729600 4075100 5654400 9729600 4075100 5654400 0 0 0 13989 3 14371 37205 58449 58449 0 VGAEELTADQNLK VKSHFIEIFLEELTKVGAEELTADQNLKFI TKVGAEELTADQNLKFIDPFCRIAARTKDS K V G L K F 2 0 1 1 0 1 2 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1386.6991 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 185 197 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 2.0354E-74 215.83 2 2 1.0923 1.0731 7.5664 4 Median 1.003 1.13 1.2957 2 0 Median 1.2183 0.99862 4.1592 2 0 Median 315600000 153730000 161870000 254070000 126140000 127930000 61526000 27587000 33939000 13990 1618 14372 37206;37207;37208;37209 58450;58451;58452;58453;58454;58455;58456;58457 58451 8 VGAPLICCEIK GAGTVTEVTDYTTGRVGAPLICCEIKLKDW TTGRVGAPLICCEIKLKDWQEGGYTINDKP R V G I K L 1 0 0 0 2 0 1 1 0 2 1 1 0 0 1 0 0 0 0 1 0 0 11 0 1258.6414 Q8TAF6;O60488;B4DH39;H0Y9A0 Q8TAF6 447 457 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.0033898 59.908 1 1.2562 1.2901 NaN 1 Median 1.2562 1.2901 NaN 1 0 Median NaN NaN NaN 0 0 Median 9489200 4467800 5021400 9489200 4467800 5021400 0 0 0 13991 1394 14373 37210 58458 58458 1 VGAPLVCCEIK GAGTISEVWDYNTGRVGAPLVCCEIKLKNW NTGRVGAPLVCCEIKLKNWEEGGYFNTDKP R V G I K L 1 0 0 0 2 0 1 1 0 1 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1244.6257 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6 B3KN05 486 496 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.0070376 53.327 1 1.2406 1.2606 NaN 1 Median 1.2406 1.2606 NaN 1 0 Median NaN NaN NaN 0 0 Median 13752000 7155900 6596300 13752000 7155900 6596300 0 0 0 13992 150 14374 37211 58459;58460 58459 2 VGDAIPAVEVFEGEPGNK ______________________________ AIPAVEVFEGEPGNKVNLAELFKGKKGVLF K V G N K V 2 0 1 1 0 0 3 3 0 1 0 1 0 1 2 0 0 0 0 3 0 0 18 0 1826.905 V9HW35;P30044 V9HW35 6 23 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 2 0.00071626 55.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11853000 0 11853000 11853000 0 11853000 0 0 0 13993 1529 14375 37212 58461 58461 1 VGDDVEFEVSSDR FFHCSQYNGNLQDLKVGDDVEFEVSSDRRT LKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ K V G D R R 0 1 0 3 0 0 2 1 0 0 0 0 0 1 0 2 0 0 0 3 0 0 13 0 1452.6369 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLD4 Q9GZV0 65 77 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 3.5614E-06 103.08 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16254000 0 16254000 16254000 0 16254000 0 0 0 13994 42 14376 37213;37214 58462;58463 58463 2 VGDDVEFEVSSDRR FFHCSQYNGNLQDLKVGDDVEFEVSSDRRT KVGDDVEFEVSSDRRTGKPIAVKLVKIKQE K V G R R T 0 2 0 3 0 0 2 1 0 0 0 0 0 1 0 2 0 0 0 3 0 0 14 1 1608.738 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLD4 Q9GZV0 65 78 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2;3 0.001599 82.417 3 2.7 3.012 10.332 2 Median 2.7 3.012 10.332 2 0 Median NaN NaN NaN 0 0 Median 126210000 47298000 78913000 126210000 47298000 78913000 0 0 0 13995 42 14377 37215;37216;37217 58464;58465;58466;58467 58466 4 VGDFVATDLDTGRPSTTVR SKTYVVTGNMGSNDKVGDFVATDLDTGRPS VATDLDTGRPSTTVRYVMGNNPADLLAVDS K V G V R Y 1 2 0 3 0 0 0 2 0 0 1 0 0 1 1 1 4 0 0 3 0 0 19 1 2006.0069 Q02413 Q02413 404 422 DSG1 Desmoglein-1 yes yes 3 0.0024171 48.112 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3012200 3012200 0 0 0 0 3012200 3012200 0 13996 1678 14378 37218 58468 58468 1 VGDGDLSAEEIPENEVSLR SPFVPEETMEEQKTKVGDGDLSAEEIPENE DLSAEEIPENEVSLRRAVSKKKTALGKNHS K V G L R R 1 1 1 2 0 0 4 2 0 1 2 0 0 0 1 2 0 0 0 2 0 0 19 0 2027.9647 Q14684;Q6PJM8 Q14684 239 257 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 1.509E-12 110.51 2 2 1.2913 1.2553 7.3861 4 Median 1.0938 1.1721 8.5155 2 0 Median 1.5466 1.2861 2.2375 2 0 Median 112070000 52228000 59838000 77177000 39172000 38005000 34889000 13056000 21833000 13997 1740 14379 37219;37220;37221;37222 58469;58470;58471;58472;58473;58474;58475;58476;58477 58476 9 VGDGDLSAEEIPENEVSLRR SPFVPEETMEEQKTKVGDGDLSAEEIPENE LSAEEIPENEVSLRRAVSKKKTALGKNHSR K V G R R A 1 2 1 2 0 0 4 2 0 1 2 0 0 0 1 2 0 0 0 2 0 0 20 1 2184.0659 Q14684;Q6PJM8 Q14684 239 258 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 3 2.9277E-07 69.763 2 1.5444 1.3559 9.1313 2 Median NaN NaN NaN 0 0 Median 1.5444 1.3559 9.1313 2 0 Median 21616000 8507700 13108000 0 0 0 21616000 8507700 13108000 13998 1740 14380 37223;37224 58478;58479;58480;58481 58478 4 VGDGVYLPPEAFTFNIK RVLYYSATKNGILYRVGDGVYLPPEAFTFN DGVYLPPEAFTFNIKLSSPVKRPRKEPVDE R V G I K L 1 0 1 1 0 0 1 2 0 1 1 1 0 2 2 0 1 0 1 2 0 0 17 0 1865.9564 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 997 1013 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 6.8077E-05 71.806 2 0.57964 0.60996 11.198 2 Median 0.57964 0.60996 11.198 2 0 Median NaN NaN NaN 0 0 Median 34911000 21781000 13131000 34911000 21781000 13131000 0 0 0 13999 222 14381 37225;37226 58482;58483;58484;58485 58483 4 VGDTSLDPNDFDFTVTGR KAFRSKVELIAYFEKVGDTSLDPNDFDFTV TSLDPNDFDFTVTGRGSPSRREQKPPKKPK K V G G R G 0 1 1 4 0 0 0 2 0 0 1 0 0 2 1 1 3 0 0 2 0 0 18 0 1954.8909 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;D6QZ43;A0A087X1U4;C6KG44;I6LM39;A0A087WVW7;A0A075BPP5 A0A140VKC4 157 174 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.0023084 48.659 2 1 0.69168 0.59545 NaN 1 Median NaN NaN NaN 0 0 Median 0.69168 0.59545 NaN 1 0 Median 24183000 21185000 2998300 16857000 16857000 0 7326400 4328100 2998300 14000 623 14382 37227;37228;37229 58486;58487;58488;58489 58489 4 VGDVTPQVK TKESPARKAAPAPGKVGDVTPQVKGGALPP APAPGKVGDVTPQVKGGALPPAKRAKKPEE K V G V K G 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 1 0 0 3 0 0 9 0 941.5182 E7ETY2;Q13428 Q13428 245 253 TCOF1 Treacle protein no no 2 0.00085417 93.429 2 1 0.62985 0.67975 37.591 3 Median 0.62982 0.6559 5.0509 2 0 Median 1.5978 1.2541 NaN 1 0 Median 73004000 42574000 30430000 69186000 41025000 28161000 3817900 1549400 2268500 14001 1712;1225 14383 37230;37231;37232 58490;58491;58492 58491 3 VGDVYIPR TSPDTLRRVFEKYGRVGDVYIPRDRYTKES VFEKYGRVGDVYIPRDRYTKESRGFAFVRF R V G P R D 0 1 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 2 0 0 8 0 917.49707 A0A024R3A8;Q9BRL6;J3QL05;J3KP15;Q8NAK9;Q53FN0;A0A024R8U5;Q01130;B3KX15;Q6NXQ0;Q8N220;B3KVY2;B3KUF7;B3KUY1 J3QL05 40 47 SRP46;SRSF8;SRSF2;SFRS2 Serine/arginine-rich splicing factor 8;Serine/arginine-rich splicing factor 2 no no 2 0.0088018 77.058 2 2 1.2668 1.442 60.499 3 Plateau 1.2624 1.4354 7.3739 2 0 Median 0.5899 0.50533 NaN 1 0 Median 225260000 102820000 122450000 216300000 96018000 120280000 8966800 6798500 2168300 14002 258;133 14384 37233;37234;37235;37236 58493;58494;58495;58496;58497;58498;58499 58493 7 VGDYVYFENSSSNPYLIR ______________________________ YVYFENSSSNPYLIRRIEELNKTANGNVEA R V G I R R 0 1 2 1 0 0 1 1 0 1 1 0 0 1 1 3 0 0 3 2 0 0 18 0 2122.0007 E7EQY4;E7EV10;Q9BTC8;E9PCS8;Q53SC0;E9PF88;H0YIT0;E7ESY4;Q13330 E7ESY4 8 25 MTA3;tmp_locus_6;MTA1 Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 no no 2 5.7277E-06 83.204 2 2 1.489 1.2246 2.9327 2 Median NaN NaN NaN 0 0 Median 1.489 1.2246 2.9327 2 0 Median 63460000 44396000 19064000 32192000 32192000 0 31268000 12204000 19064000 14003 1223;1221 14385 37237;37238;37239;37240 58500;58501;58502;58503;58504;58505;58506 58506 7 VGDYVYFENSSSNPYLVR ______________________________ YVYFENSSSNPYLVRRIEELNKTANGNVEA R V G V R R 0 1 2 1 0 0 1 1 0 0 1 0 0 1 1 3 0 0 3 3 0 0 18 0 2107.9851 A0A024R534;O94776 A0A024R534 8 25 MTA2 Metastasis-associated protein MTA2 yes no 2 1.5602E-22 133.71 2 2 1.3227 1.3177 29.073 4 Median 0.91722 1.0076 6.1815 2 0 Median 1.9311 1.6607 0.93886 2 0 Median 159110000 68975000 90135000 91084000 46213000 44871000 68027000 22763000 45264000 14004 168 14386 37241;37242;37243;37244 58507;58508;58509;58510;58511;58512;58513;58514;58515;58516 58516 10 VGEVTYVELLMDAEGK FDVKWQSLKDLVKEKVGEVTYVELLMDAEG GEVTYVELLMDAEGKSRGCAVVEFKMEESM K V G G K S 1 0 0 1 0 0 3 2 0 0 2 1 1 0 0 0 1 0 1 3 0 0 16 0 1751.8652 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3 P52272 95 110 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 2.7405E-12 113.99 4 1 2.1066 2.3877 89.994 4 Linear 1.967 2.1639 47.583 3 0 Plateau 0.40881 0.32427 NaN 1 0 Median 114750000 42433000 72315000 110250000 39303000 70945000 4499600 3129300 1370300 14005 1599 14387;14388 37245;37246;37247;37248;37249 58517;58518;58519;58520;58521;58522;58523;58524 58517 1384 8 VGFQYEGTYK YGSRGPTEADELMKRVGFQYEGTYKWVNPH ELMKRVGFQYEGTYKWVNPHKL________ R V G Y K W 0 0 0 0 0 1 1 2 0 0 0 1 0 1 0 0 1 0 2 1 0 0 10 0 1190.5608 Q2VF42;Q2Q9H2;Q2Q9B7;A8K8D9;P11413;Q0PHS4 Q2VF42 459 468 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.033074 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14006 775 14389 37250 58525 58525 1 VGGHAAEYGAEALER LSAADKGNVKAAWGKVGGHAAEYGAEALER VGGHAAEYGAEALERMFLSFPTTKTYFPHF K V G E R M 4 1 0 0 0 0 3 3 1 0 1 0 0 0 0 0 0 0 1 1 0 0 15 0 1528.727 CON__P01966 CON__P01966 18 32 yes yes 2;3 1.6853E-05 71.555 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42286000 42286000 0 42286000 42286000 0 0 0 0 + 14007 1149 14390 37251;37252 58526;58527 58526 2 VGGIYTVLQTK ENAVLFEVAWEVANKVGGIYTVLQTKAKVT VANKVGGIYTVLQTKAKVTGDEWGDNYFLV K V G T K A 0 0 0 0 0 1 0 2 0 1 1 1 0 0 0 0 2 0 1 2 0 0 11 0 1177.6707 P13807;Q53ER0;A8K6K7 P13807 40 50 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.0004662 76.282 2 0.48252 0.38847 0.64097 2 Median NaN NaN NaN 0 0 Median 0.48252 0.38847 0.64097 2 0 Median 40183000 27205000 12979000 0 0 0 40183000 27205000 12979000 14008 1479 14391 37253;37254 58528;58529;58530;58531 58528 4 VGGNEVTELSTGSSGHDSSLFEDK LYEEYVEKPLKLVLKVGGNEVTELSTGSSG STGSSGHDSSLFEDKNDHDKHKDRKRKKRK K V G D K N 0 0 1 2 0 0 3 4 1 0 2 1 0 1 0 5 2 0 0 2 0 0 24 0 2451.1038 Q9NPI1 Q9NPI1 29 52 BRD7 Bromodomain-containing protein 7 yes yes 3 0.031534 24.896 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5981000 0 5981000 5981000 0 5981000 0 0 0 14009 2057 14392 37255 58532 58532 1 VGGNIEVLGFNAR LRNDKDKPLPPLLARVGGNIEVLGFNARQR ARVGGNIEVLGFNARQRKAFLNAIMRYGMP R V G A R Q 1 1 2 0 0 0 1 3 0 1 1 0 0 1 0 0 0 0 0 2 0 0 13 0 1344.715 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;Q659F1;Q659D0;Q6ZU36;B3KRD4 F5GWX5 1400 1412 CHD4;CHD5;DKFZp434K213;DKFZp434P202 Chromodomain-helicase-DNA-binding protein 4 no no 2 1.0156E-05 98.257 2 2 1.7683 1.5425 35.206 3 Median 0.74389 0.85327 NaN 1 0 Median 1.815 1.5689 2.4035 2 0 Median 327630000 137410000 190210000 244730000 107150000 137590000 82895000 30267000 52628000 14010 515 14393 37256;37257;37258;37259 58533;58534;58535;58536;58537;58538;58539;58540 58533 8 VGGNIEVLGFNTR LRNEKDKPLPPLLARVGGNIEVLGFNTRQR ARVGGNIEVLGFNTRQRKAFLNAVMRWGMP R V G T R Q 0 1 2 0 0 0 1 3 0 1 1 0 0 1 0 0 1 0 0 2 0 0 13 0 1374.7256 Q12873;B4DLC6;Q2TAZ1 Q12873 1403 1415 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.012922 50.648 1 2 1.8765 1.6163 5.6774 2 Median NaN NaN NaN 0 0 Median 1.8765 1.6163 5.6774 2 0 Median 10908000 4543200 6364400 0 0 0 10908000 4543200 6364400 14011 1701 14394 37260;37261;37262 58541;58542;58543;58544 58543 4 VGGSDEEASGIPSR EAHRKKSLEGMKKARVGGSDEEASGIPSRT RVGGSDEEASGIPSRTASLELGEDDDEQED R V G S R T 1 1 0 1 0 0 2 3 0 1 0 0 0 0 1 3 0 0 0 1 0 0 14 0 1359.6266 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 356 369 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 4.4407E-31 162.93 3 2 1.4957 1.2634 19.172 4 Median 1.36 1.47 29.551 2 0 Median 1.4957 1.2634 0.016133 2 0 Median 126020000 49915000 76108000 113660000 44971000 68688000 12363000 4943700 7419200 14012 493 14395 37263;37264;37265;37266;37267 58545;58546;58547;58548;58549;58550;58551;58552 58545 7 VGGSQPPFQGQR RPGEGTAPLPPPGQKVGGSQPPFQGQREPG GQKVGGSQPPFQGQREPGPHALGMSGLHGP K V G Q R E 0 1 0 0 0 3 0 3 0 0 0 0 0 1 2 1 0 0 0 1 0 0 12 0 1256.6262 Q9BTC0 Q9BTC0 1743 1754 DIDO1 Death-inducer obliterator 1 yes yes 2 0.021992 38.276 2 1.8298 1.6024 9.321 2 Median NaN NaN NaN 0 0 Median 1.8298 1.6024 9.321 2 0 Median 4870300 1737100 3133200 0 0 0 4870300 1737100 3133200 14013 2002 14396 37268;37269 58553;58554 58554 2 VGGVGPADTHEPLRPEAEPGELER WAEFRPIQQALAQERVGGVGPADTHEPLRP HEPLRPEAEPGELERERARRREERRKRFGM R V G E R E 2 2 0 1 0 0 5 4 1 0 2 0 0 0 4 0 1 0 0 2 0 0 24 1 2511.2354 J3KSW8;U6FSN9;Q6WCQ1;B9EGI2;Q8N236;H0Y2S9 J3KSW8 366 389 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 4 0.00060729 38.933 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9300900 0 9300900 7599000 0 7599000 1701800 0 1701800 14014 1330 14397 37270;37271 58555;58556 58556 2 VGHFDPVTR GITYDRKDIEEHLQRVGHFDPVTRSPLTQE EEHLQRVGHFDPVTRSPLTQEQLIPNLAMK R V G T R S 0 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 2 0 0 9 0 1026.5247 Q9UNE7;H3BTA3 Q9UNE7 264 272 STUB1 E3 ubiquitin-protein ligase CHIP yes no 3 0.005429 43.635 1 1.8659 1.9243 NaN 1 Median 1.8659 1.9243 NaN 1 0 Median NaN NaN NaN 0 0 Median 21475000 5953400 15521000 21475000 5953400 15521000 0 0 0 14015 2115 14398 37272 58557 58557 1 VGIEAAEMLLANLR FAGSSLGKRGVNADKVGIEAAEMLLANLRH KVGIEAAEMLLANLRHGGTVVEYLQDQLIV K V G L R H 3 1 1 0 0 0 2 1 0 1 3 0 1 0 0 0 0 0 0 1 0 0 14 0 1498.8177 A8K8K1;O00442 A8K8K1 273 286 RTCA RNA 3-terminal phosphate cyclase yes no 2 0.0039416 50.284 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2697700 0 2697700 2697700 0 2697700 0 0 0 14016 778 14399 37273 58558 58558 607 1 VGIFTGAR GDAQGMNAAVRAVVRVGIFTGARVFFVHEG AVRAVVRVGIFTGARVFFVHEGYQGLVDGG R V G A R V 1 1 0 0 0 0 0 2 0 1 0 0 0 1 0 0 1 0 0 1 0 0 8 0 819.46029 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;F8VX13;F8VNX2;F8VZQ1;F8W1J8;F8VSF7;F8VW30;F8VSL1;F8VUB8;F8VYK8;F8VTQ3;F8VZI0;F8VVE3 A0A024R0Y5 40 47 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.041092 46.994 1 2.185 2.425 NaN 1 Median 2.185 2.425 NaN 1 0 Median NaN NaN NaN 0 0 Median 69076000 22756000 46320000 69076000 22756000 46320000 0 0 0 14017 61 14400 37274 58559 58559 1 VGILDVDLCGPSIPR ISTELALALRHAGKKVGILDVDLCGPSIPR VGILDVDLCGPSIPRMLGAQGRAVHQCDRG K V G P R M 0 1 0 2 1 0 0 2 0 2 2 0 0 0 2 1 0 0 0 2 0 0 15 0 1609.8498 Q2YS46;B2RDN3;Q9Y5Y2;H3BNF0;H3BNS4 Q2YS46 40 54 NUBP1;NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 4.395E-06 97.214 2 1.239 1.2397 3.5835 2 Median 1.239 1.2397 3.5835 2 0 Median NaN NaN NaN 0 0 Median 35054000 15978000 19077000 35054000 15978000 19077000 0 0 0 14018 888 14401 37275;37276 58560;58561;58562 58562 3 VGILLDEASGVNK KFDLLVDANDVILERVGILLDEASGVNKNQ ERVGILLDEASGVNKNQQPVLPAGLQVPKT R V G N K N 1 0 1 1 0 0 1 2 0 1 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1313.7191 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 124 136 EXOSC10 Exosome component 10 yes no 2 5.0247E-06 106.35 2 1 0.97001 0.99894 17.045 3 Median 0.94972 1.0375 5.355 2 0 Median 0.97001 0.77799 NaN 1 0 Median 94514000 49942000 44572000 86973000 46696000 40277000 7541400 3246300 4295100 14019 1676 14402 37277;37278;37279 58563;58564;58565 58563 3 VGINYQPPTVVPGGDLAK KRSIQFVDWCPTGFKVGINYQPPTVVPGGD NYQPPTVVPGGDLAKVQRAVCMLSNTTAIA K V G A K V 1 0 1 1 0 1 0 3 0 1 1 1 0 0 3 0 1 0 1 3 0 0 18 0 1823.9781 B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;B4DN58;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 318 335 TUBA1B;TUBA1C;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2 2.6115E-16 114.72 3 2 1.2527 1.1541 27.318 5 Median 1.5316 1.8101 26.328 3 0 Plateau 1.2453 1.0857 0.32716 2 0 Median 3115700000 1259900000 1855800000 2656400000 1052600000 1603800000 459310000 207260000 252050000 14020 922;1257;1659;1869 14403 37280;37281;37282;37283;37284 58566;58567;58568;58569;58570;58571;58572;58573;58574;58575;58576;58577;58578;58579 58569 14 VGIQELGPR IFFRFHRYIFRSEKKVGIQELGPRFTLKLR FRSEKKVGIQELGPRFTLKLRSLQKGTFDS K V G P R F 0 1 0 0 0 1 1 2 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 0 967.54508 Q9H9Y2 Q9H9Y2 303 311 RPF1 Ribosome production factor 1 yes yes 2 0.0024962 74.184 2 2 0.9613 1.186 24.836 4 Linear 1.0613 1.1492 6.477 2 0 Median 0.86482 0.75122 1.0899 2 0 Median 91363000 43556000 47807000 86158000 40720000 45438000 5205100 2835500 2369600 14021 2048 14404 37285;37286;37287;37288 58580;58581;58582;58583 58581 4 VGIQQGLLSQSTR GRLNARPGVGGVRSRVGIQQGLLSQSTRTA SRVGIQQGLLSQSTRTATFQQRFDARQKIG R V G T R T 0 1 0 0 0 3 0 2 0 1 2 0 0 0 0 2 1 0 0 1 0 0 13 0 1385.7627 Q96DI9;F6VRR5;B4E0L0;Q9BY77;Q8WUT1;F8WCX5;Q659C6;B4DSH9;Q6R954;F8WEE2 Q96DI9 30 42 POLDIP3;DKFZp434G0310;PDIP46 Polymerase delta-interacting protein 3 yes no 2 2.261E-06 118.4 2 2 0.79101 0.73216 3.9654 4 Median 0.71842 0.74995 3.9975 2 0 Median 0.84807 0.71764 3.4348 2 0 Median 57409000 31420000 25989000 43670000 23800000 19870000 13738000 7619200 6119000 14022 1063 14405 37289;37290;37291;37292 58584;58585;58586;58587;58588;58589;58590 58584 7 VGIVAWHPTAR SLTEPVVILEGHSKRVGIVAWHPTARNVLL HSKRVGIVAWHPTARNVLLSAGCDNAIIIW R V G A R N 2 1 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 2 0 0 11 0 1205.6669 Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B4E3S0;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7;F8VV53 Q53G58 133 143 CORO1C Coronin;Coronin-1C yes no 3 0.00091814 60.641 2 2 3.9653 3.7508 45.971 4 Median 2.5553 2.7749 2.0391 2 0 Median 6.9088 5.9255 24.089 2 0 Median 93399000 22379000 71020000 85084000 21208000 63876000 8314800 1170500 7144300 14023 340 14406 37293;37294;37295;37296 58591;58592;58593;58594 58592 4 VGLADLHPDVFATAPR VQAWVESLRGFEQERVGLADLHPDVFATAP GLADLHPDVFATAPRLDILHQVAMWQKNFK R V G P R L 3 1 0 2 0 0 0 1 1 0 2 0 0 1 2 0 1 0 0 2 0 0 16 0 1677.8839 K7EKI4;K7ELF1;K7ELQ0;K7ES61;A0A024R7C5;X6RAY8;Q9BYD3 K7EKI4 77 92 MRPL4 39S ribosomal protein L4, mitochondrial yes no 3 0.00098769 34.721 2 1 1.2682 1.3114 23.723 3 Median 1.3295 1.3709 6.2649 2 0 Median 1.0891 0.91555 NaN 1 0 Median 61614000 24167000 37447000 58517000 22855000 35662000 3097500 1312200 1785300 14024 219 14407 37297;37298;37299 58595;58596;58597;58598 58595 4 VGLFALSDIK PNCETQKWSVNGDTRVGLFALSDIKAGTEL NGDTRVGLFALSDIKAGTELTFNYNLECLG R V G I K A 1 0 0 1 0 0 0 1 0 1 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1061.6121 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q96DQ7;Q9H6H8 B2RWP5 1771 1780 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.0013651 73.985 2 1 0.68534 0.6942 39.498 3 Median 0.67538 0.68308 2.2827 2 0 Median 1.7396 1.3531 NaN 1 0 Median 16241000 9724600 6515900 14100000 8899500 5200500 2140500 825140 1315400 14025 898 14408 37300;37301;37302 58599;58600;58601;58602;58603 58601 5 VGLGLGYLELPQINYK HVPEDFWPPQPKLYKVGLGLGYLELPQINY GLGLGYLELPQINYKLSVEHKQRPKVELMP K V G Y K L 0 0 1 0 0 1 1 3 0 1 4 1 0 0 1 0 0 0 2 1 0 0 16 0 1775.9822 B4DIX0;Q13045 B4DIX0 700 715 FLII Protein flightless-1 homolog yes no 2 6.6564E-09 108.9 2 2.2576 2.2809 3.086 2 Median 2.2576 2.2809 3.086 2 0 Median NaN NaN NaN 0 0 Median 19875000 6769200 13106000 19875000 6769200 13106000 0 0 0 14026 984 14409 37303;37304 58604;58605;58606;58607;58608 58604 5 VGLIAAR GKPSTIRRDAPAGRKVGLIAARRTGRLRGT RDAPAGRKVGLIAARRTGRLRGTKTVQEKE K V G A R R 2 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 698.44391 P62917;B4DVG7;E9PKU4;E9PP36 P62917 235 241 RPL8 60S ribosomal protein L8 yes no 2 0.0014225 137.2 2 1 0.81851 0.90213 12.531 3 Median 0.79043 0.93616 5.2359 2 0 Median 0.87207 0.76084 NaN 1 0 Median 2254400000 1272100000 982350000 2202400000 1243700000 958630000 52048000 28323000 23726000 14027 1653 14410 37305;37306;37307 58609;58610;58611;58612;58613 58610 5 VGLIALK DEPWPIHPWEPGSFRVGLIALKLGMMPLWT PWEPGSFRVGLIALKLGMMPLWTKDGQKHV R V G L K L 1 0 0 0 0 0 0 1 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 712.48471 H0Y9G6;E7ETU7;B4DKM0;P09001;E9PF06 H0Y9G6 112 118 MRPL3 39S ribosomal protein L3, mitochondrial yes no 2 0.03153 66.994 2 1.3341 1.3473 14.793 2 Median 1.3341 1.3473 14.793 2 0 Median NaN NaN NaN 0 0 Median 41794000 17551000 24243000 41794000 17551000 24243000 0 0 0 14028 992 14411 37308;37309 58614;58615 58614 2 VGLPPLEK DSDWFAENYMGRKTKVGLPPLEKFNNWGGS YMGRKTKVGLPPLEKFNNWGGSLSLGHPFG K V G E K F 0 0 0 0 0 0 1 1 0 0 2 1 0 0 2 0 0 0 0 1 0 0 8 0 851.51165 P55084;B4DY96;B5MD38;F5GZQ3;B4DDC9 P55084 409 416 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.027337 53.968 1 1.535 1.5055 NaN 1 Median 1.535 1.5055 NaN 1 0 Median NaN NaN NaN 0 0 Median 20594000 8026400 12567000 20594000 8026400 12567000 0 0 0 14029 1615 14412 37310 58616;58617 58617 2 VGLQVVAVK VDGEALSTLVLNRLKVGLQVVAVKAPGFGD VLNRLKVGLQVVAVKAPGFGDNRKNQLKDM K V G V K A 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 4 0 0 9 0 911.5804 B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z5E7;B7Z4F6;B7Z532 B7Z597 284 292 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.00015544 108.09 2 2 1.8206 1.8643 51.045 4 Linear 1.809 1.8455 14.708 2 0 Median 0.92837 0.77337 5.9839 2 0 Median 49945000 18181000 31764000 46483000 16469000 30014000 3462700 1712400 1750300 14030 143 14413 37311;37312;37313;37314 58618;58619;58620;58621;58622;58623;58624;58625 58618 8 VGLTNYAAAYCTGLLLAR VCAAYAHELPKYGVKVGLTNYAAAYCTGLL TNYAAAYCTGLLLARRLLNRFGMDKIYEGQ K V G A R R 4 1 1 0 1 0 0 2 0 0 4 0 0 0 0 0 2 0 2 1 0 0 18 0 1926.0033 A2RUM7;P46777;Q59GX9;B3KTM6;Q5T7N0 A2RUM7 90 107 RPL5 60S ribosomal protein L5 yes no 2 1.7908E-23 126.1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89393000 0 89393000 89393000 0 89393000 0 0 0 14031 653 14414 37315 58626;58627;58628 58627 3 VGLTSEILNSFEHEFLSK ______________________________ TSEILNSFEHEFLSKRLSKARHSTCKDSGH K V G S K R 0 0 1 0 0 0 3 1 1 1 3 1 0 2 0 3 1 0 0 1 0 0 18 0 2049.0419 E9PIQ6;Q14181 E9PIQ6 15 32 POLA2 DNA polymerase alpha subunit B yes no 3 1.0024E-22 129.11 2 1.4493 1.4928 1.7051 2 Median 1.4493 1.4928 1.7051 2 0 Median NaN NaN NaN 0 0 Median 28589000 11567000 17021000 28589000 11567000 17021000 0 0 0 14032 1240 14415 37316;37317 58629;58630;58631;58632 58630 4 VGLTVGYQIR AISVAERVAKERAERVGLTVGYQIRLESVK ERAERVGLTVGYQIRLESVKSSATRLLYCT R V G I R L 0 1 0 0 0 1 0 2 0 1 1 0 0 0 0 0 1 0 1 2 0 0 10 0 1104.6291 Q6P158;B4DKW2 Q6P158 621 630 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2 0.00013543 93.429 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10137000 10137000 0 10137000 10137000 0 0 0 0 14033 1850 14416 37318 58633 58633 1 VGNLGLATSFFNER SDIEEYVHRIGRTGRVGNLGLATSFFNERN RVGNLGLATSFFNERNINITKDLLDLLVEA R V G E R N 1 1 2 0 0 0 1 2 0 0 2 0 0 2 0 1 1 0 0 1 0 0 14 0 1523.7732 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A0J9YVQ7;A0A087WVZ1 A0A0D9SFB3 535 548 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 1.8308E-46 178.71 2 2 1.7201 2.0112 29.237 4 Linear 1.6739 1.9039 6.7087 2 0 Median 1.3559 1.1526 0.34596 2 0 Median 309010000 117330000 191680000 259260000 95718000 163540000 49754000 21616000 28138000 14034 522 14417 37319;37320;37321;37322 58634;58635;58636;58637;58638;58639;58640;58641;58642 58636 9 VGPADDGPAPSGEEEGEGGGEAGGK ______________________________ SGEEEGEGGGEAGGKEPAADAAPGPSAAFR R V G G K E 3 0 0 2 0 0 5 9 0 0 0 1 0 0 3 1 0 0 0 1 0 0 25 0 2224.9356 Q9UKN8;Q05CN7;F2Z356 Q9UKN8 9 33 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 6.4939E-09 53.828 2 0.77242 0.79692 13.452 2 Median 0.77242 0.79692 13.452 2 0 Median NaN NaN NaN 0 0 Median 24053000 11466000 12587000 24053000 11466000 12587000 0 0 0 14035 2107 14418 37323;37324 58643;58644;58645 58645 3 VGPATPSAQVGK MGPLGKGAGPVPPGKVGPATPSAQVGKWEE PGKVGPATPSAQVGKWEEDSESSSEESSDS K V G G K W 2 0 0 0 0 1 0 2 0 0 0 1 0 0 2 1 1 0 0 2 0 0 12 0 1110.6033 E7ETY2;B4DRA2;Q13428;Q59FZ2 Q13428 529 540 TCOF1 Treacle protein no no 2 4.8054E-06 110.47 2 1 0.73306 0.82107 30.43 3 Median 0.68889 0.75676 11.534 2 0 Median 1.584 1.2574 NaN 1 0 Median 99358000 54364000 44994000 95344000 52845000 42499000 4013700 1519500 2494200 14036 1712;1225 14419 37325;37326;37327 58646;58647;58648 58646 3 VGPDVVTDPAFLVTR HLQAAVAFVEQGHVRVGPDVVTDPAFLVTR VGPDVVTDPAFLVTRSMEDFVTWVDSSKIK R V G T R S 1 1 0 2 0 0 0 1 0 0 1 0 0 1 2 0 2 0 0 4 0 0 15 0 1584.8512 Q9NV31 Q9NV31 138 152 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.00016862 78.324 2 2 0.92087 0.92155 6.534 4 Median 0.84083 0.95177 5.0501 2 0 Median 1.03 0.88204 6.685 2 0 Median 168550000 88208000 80345000 115350000 64136000 51211000 53206000 24072000 29134000 14037 2073 14420 37328;37329;37330;37331 58649;58650;58651;58652;58653;58654 58652 6 VGPEELPVVGQLLR PRVLRLMLQSLRVNRVGPEELPVVGQLLRL RVGPEELPVVGQLLRLLLQHAPLRTHMLTN R V G L R L 0 1 0 0 0 1 2 2 0 0 3 0 0 0 2 0 0 0 0 3 0 0 14 0 1504.8613 A0A024R169;Q9NXF1;B4DQR0 A0A024R169 852 865 TEX10 Testis-expressed sequence 10 protein yes no 2 0.00017534 72.848 2 1.1665 1.1924 16.701 2 Median 1.1665 1.1924 16.701 2 0 Median NaN NaN NaN 0 0 Median 12090000 5276500 6814000 12090000 5276500 6814000 0 0 0 14038 72 14421 37332;37333 58655;58656;58657 58656 3 VGPGAGESPGTPPFR GLFGFAARTSVFLVRVGPGAGESPGTPPFR VGPGAGESPGTPPFRVIGELVGHTERVSGF R V G F R V 1 1 0 0 0 0 1 4 0 0 0 0 0 1 4 1 1 0 0 1 0 0 15 0 1424.7048 B7ZLC9;Q8TEQ6;Q58EZ8 B7ZLC9 41 55 GEMIN5 Gem-associated protein 5 yes no 2 0.00029571 75.695 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4925400 4925400 0 4925400 4925400 0 0 0 0 14039 1114 14422 37334 58658 58658 1 VGPGFDAALQVSAAIGTNLR SSSSSSASSGPALLRVGPGFDAALQVSAAI DAALQVSAAIGTNLRRFRAVFGESGGGGGS R V G L R R 4 1 1 1 0 1 0 3 0 1 2 0 0 1 1 1 1 0 0 2 0 0 20 0 1956.0429 Q03164;E9PR05;Q9UPD0;Q9Y6P1;H7C5W4;H0YEU4;H7C5V8 Q03164 108 127 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 1.8045E-06 71.692 2 2.2266 1.8293 NaN 1 Median NaN NaN NaN 0 0 Median 2.2266 1.8293 NaN 1 0 Median 20399000 4180000 16219000 0 0 0 20399000 4180000 16219000 14040 1680 14423 37335;37336 58659;58660 58660 2 VGPSSGDAPEPSSR LEQPRSCLFEQGTRRVGPSSGDAPEPSSRR RVGPSSGDAPEPSSRRTQSSLTVSEVLTRR R V G S R R 1 1 0 1 0 0 1 2 0 0 0 0 0 0 3 4 0 0 0 1 0 0 14 0 1341.6161 A0A024RAC0;Q86V48 A0A024RAC0 978 991 LUZP1 Leucine zipper protein 1 yes no 2 0.00022458 65.842 3 1 2.1931 2.1717 NaN 1 Median 2.1931 2.1717 NaN 1 0 Median NaN NaN NaN 0 0 Median 19391000 4253500 15137000 18016000 4253500 13763000 1374900 0 1374900 14041 300 14424 37337;37338;37339;37340 58661;58662;58663;58664;58665 58664 5 VGPSVPR KRKGSDDAPYSPTARVGPSVPRQDRPVREG APYSPTARVGPSVPRQDRPVREGTRVASIE R V G P R Q 0 1 0 0 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 2 0 0 7 0 710.40752 O75151;Q8N359;B4DH04;E7ET14;A0A087WW48;Q6P2C5 O75151 910 916 PHF2 Lysine-specific demethylase PHF2 yes no 2 0.011218 108.98 1 1.1101 1.1139 NaN 1 Median 1.1101 1.1139 NaN 1 0 Median NaN NaN NaN 0 0 Median 19043000 8850900 10192000 19043000 8850900 10192000 0 0 0 14042 1400 14425 37341 58666;58667 58667 2 VGQALELPLR EPHSMEFAPCQVEARVGQALELPLRISGLM QVEARVGQALELPLRISGLMPGGASEVVTL R V G L R I 1 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 10 0 1094.6448 Q8TEM1 Q8TEM1 549 558 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 2.2021E-16 157.99 2 2 0.71882 0.80402 44.291 3 Median 0.80756 0.91703 18.599 2 0 Median 0.51568 0.4408 NaN 1 0 Median 169590000 95265000 74327000 160550000 88874000 71672000 9045400 6391200 2654200 14043 1937 14426 37342;37343;37344;37345 58668;58669;58670;58671;58672;58673;58674;58675 58671 8 VGQAVDVVGQAGK VTFDEELRPLPVSVRVGQAVDVVGQAGKPK VRVGQAVDVVGQAGKPKTITGFQTHTTPVL R V G G K P 2 0 0 1 0 2 0 3 0 0 0 1 0 0 0 0 0 0 0 4 0 0 13 0 1226.6619 Q59EG8;Q13200;B4DM22;Q13041 Q59EG8 851 863 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 7.4959E-05 94.66 1 2.3072 2.4518 NaN 1 Median 2.3072 2.4518 NaN 1 0 Median NaN NaN NaN 0 0 Median 20578000 5547400 15031000 20578000 5547400 15031000 0 0 0 14044 1707 14427 37346 58676 58676 1 VGQAVDVVGQAGKPK VTFDEELRPLPVSVRVGQAVDVVGQAGKPK VGQAVDVVGQAGKPKTITGFQTHTTPVLLA R V G P K T 2 0 0 1 0 2 0 3 0 0 0 2 0 0 1 0 0 0 0 4 0 0 15 1 1451.8096 Q59EG8;Q13200;B4DM22;Q13041 Q59EG8 851 865 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2;3 0.0015352 79.286 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22983000 0 22983000 22983000 0 22983000 0 0 0 14045 1707 14428 37347;37348;37349 58677;58678;58679 58678 3 VGQDPVLR LVLERSLNRVHLLGRVGQDPVLRQVEGKNP RVHLLGRVGQDPVLRQVEGKNPVTIFSLAT R V G L R Q 0 1 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 8 0 882.49232 Q567R6;A4D1U3;Q04837;A0A0G2JLD8;E7EUY5;B7Z268;C9K0U8 Q567R6 39 46 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 0.0078194 81.296 1 0.58156 0.63615 NaN 1 Median 0.58156 0.63615 NaN 1 0 Median NaN NaN NaN 0 0 Median 52602000 33769000 18833000 52602000 33769000 18833000 0 0 0 14046 666 14429 37350 58680 58680 1 VGQEIEVRPGIVSK KGGVAGGSILKGVLKVGQEIEVRPGIVSKD KVGQEIEVRPGIVSKDSEGKLMCKPIFSKI K V G S K D 0 1 0 0 0 1 2 2 0 2 0 1 0 0 1 1 0 0 0 3 0 0 14 1 1509.8515 P41091 P41091 290 303 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 2;3 6.2093E-06 98.942 2 2.2637 2.6635 NaN 1 Median 2.2637 2.6635 NaN 1 0 Median NaN NaN NaN 0 0 Median 33819000 14847000 18972000 33819000 14847000 18972000 0 0 0 14047 1559 14430 37351;37352 58681;58682 58682 2 VGQFGQHYQSSASSSSSSSFPSPQR RPSTLPSSAAGYQLRVGQFGQHYQSSASSS SASSSSSSSFPSPQRFSQSGQSYDGSYNVN R V G Q R F 1 1 0 0 0 4 0 2 1 0 0 0 0 2 2 10 0 0 1 1 0 0 25 0 2629.1793 W5ZR30;Q9UGU0 W5ZR30 228 252 TCF20 Transcription factor 20 yes no 3 0.044303 33.758 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14048 2100 14431 37353 58683 58683 1 VGQLSEGAIAAIMQK ______________________________ VGQLSEGAIAAIMQKGDTNIKPILQVINIR M V G Q K G 3 0 0 0 0 2 1 2 0 2 1 1 1 0 0 1 0 0 0 1 0 0 15 0 1514.8127 P27694 P27694 2 16 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.0016464 55.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4118300 0 4118300 4118300 0 4118300 0 0 0 14049 1525 14432 37354 58684 58684 1290 1 VGQYLNCIVEK AQEYIRQKNKGAKLKVGQYLNCIVEKVKGN AKLKVGQYLNCIVEKVKGNGGVVSLSVGHS K V G E K V 0 0 1 0 1 1 1 1 0 1 1 1 0 0 0 0 0 0 1 2 0 0 11 0 1321.67 Q14690;B4DH82;B4DES7 Q14690 235 245 PDCD11 Protein RRP5 homolog yes no 2 2.3195E-08 121.73 2 0.94872 0.94822 7.0604 2 Median 0.94872 0.94822 7.0604 2 0 Median NaN NaN NaN 0 0 Median 53348000 26473000 26875000 53348000 26473000 26875000 0 0 0 14050 1741 14433 37355;37356 58685;58686;58687;58688;58689 58686 5 VGRPIVEALR HPKALAELTKSDWERVGRPIVEALREISSA SDWERVGRPIVEALREISSAAAHSQPFAWK R V G L R E 1 2 0 0 0 0 1 1 0 1 1 0 0 0 1 0 0 0 0 2 0 0 10 1 1108.6717 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678;I3L399;E7EN12;B4DZ29;I3L4M4;I3L4A4;I3L1J7 Q9HBB9 31 40 GEMIN4 Gem-associated protein 4 yes no 3 0.00042174 79.201 1 1.9695 2.139 NaN 1 Median 1.9695 2.139 NaN 1 0 Median NaN NaN NaN 0 0 Median 33455000 10494000 22961000 33455000 10494000 22961000 0 0 0 14051 1940 14434 37357 58690 58690 1 VGSELCAGWEEQFEVDREPSLDR SARGNSRLNIWGEARVGSELCAGWEEQFEV WEEQFEVDREPSLDRNRRVRGGKSQKRKRL R V G D R N 1 2 0 2 1 1 5 2 0 0 2 0 0 1 1 2 0 1 0 2 0 0 23 1 2707.2184 Q6AHZ7;Q12789;Q6AWA4;H3BU55 Q6AHZ7 1183 1205 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 0.054642 13.057 1 1.299 1.1838 NaN 1 Median NaN NaN NaN 0 0 Median 1.299 1.1838 NaN 1 0 Median 2348600 1165300 1183400 0 0 0 2348600 1165300 1183400 14052 1699 14435 37358 58691 58691 1 VGSHITGGDIYGIVSENSLIK SRDIKWDFTPCKNLRVGSHITGGDIYGIVS GGDIYGIVSENSLIKHKIMLPPRNRGTVTY R V G I K H 0 0 1 1 0 0 1 4 1 4 1 1 0 0 0 3 1 0 1 2 0 0 21 0 2158.127 P38606;C9JA17;C9JVW8 P38606 143 163 ATP6V1A V-type proton ATPase catalytic subunit A yes no 3 0.054468 9.7552 1 1.7621 1.4296 NaN 1 Median NaN NaN NaN 0 0 Median 1.7621 1.4296 NaN 1 0 Median 4408700 1726800 2681900 0 0 0 4408700 1726800 2681900 14053 1553 14436 37359 58692 58692 1 VGSLDNVGHLPAGGAVK IESQKLNFKEKAQAKVGSLDNVGHLPAGGA SLDNVGHLPAGGAVKIETYRLTFRANARAR K V G V K I 2 0 1 1 0 0 0 4 1 0 2 1 0 0 1 1 0 0 0 3 0 0 17 0 1589.8526 H0Y2V1;A0A024R2V0;F8W9U4;Q86Y04;E7EVA0;P27816;B4DSQ1;H7C4C5;Q8NDS5 H0Y2V1 399 415 MAP4;DKFZp547H1810 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 0.003026 31.876 1 1.026 1.0294 NaN 1 Median 1.026 1.0294 NaN 1 0 Median NaN NaN NaN 0 0 Median 13770000 7116300 6654100 13770000 7116300 6654100 0 0 0 14054 123 14437 37360 58693 58693 1 VGSPATVTFQQNK SGSVTTGTKMVLTTKVGSPATVTFQQNKNF TKVGSPATVTFQQNKNFHQTFATWVKQGQS K V G N K N 1 0 1 0 0 2 0 1 0 0 0 1 0 1 1 1 2 0 0 2 0 0 13 0 1375.7096 E7ETD6;Q12830;F5GXF5;J3QQK4 E7ETD6 1957 1969 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00077554 79.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11863000 11863000 0 11863000 11863000 0 0 0 0 14055 1224 14438 37361 58694;58695 58694 2 VGSQDVSLESSQAVGK KTPKQLLCRPSTGNRVGSQDVSLESSQAVG GSQDVSLESSQAVGKMQSTQTTNTSNSTNK R V G G K M 1 0 0 1 0 2 1 2 0 0 1 1 0 0 0 4 0 0 0 3 0 0 16 0 1589.7897 B4DRJ7;Q5EBM7;Q53F79;A0A024R6Q7;H3BQM0;G4U4J3;Q8NDF8 B4DRJ7 181 196 PAPD5 Non-canonical poly(A) RNA polymerase PAPD5 yes no 2 0.00027056 68.676 1 1 1.2181 1.004 NaN 1 Median NaN NaN NaN 0 0 Median 1.2181 1.004 NaN 1 0 Median 4387400 3098700 1288700 2023200 2023200 0 2364200 1075500 1288700 14056 206 14439 37362;37363 58696;58697 58696 2 VGSTSQPTLETFQDLLHR SKALFSKAEEQLLSKVGSTSQPTLETFQDL TSQPTLETFQDLLHRHPDAFYLARTAKALQ K V G H R H 0 1 0 1 0 2 1 1 1 0 3 0 0 1 1 2 3 0 0 1 0 0 18 0 2028.0276 A0A024R134;F8W126;Q96EZ8 A0A024R134 29 46 MCRS1 Microspherule protein 1 yes no 3 0.00046449 24.859 1 0.60973 0.6035 NaN 1 Median 0.60973 0.6035 NaN 1 0 Median NaN NaN NaN 0 0 Median 12343000 7962600 4380000 12343000 7962600 4380000 0 0 0 14057 67 14440 37364 58698 58698 1 VGSVEEFQGQER LDRELRGLDDIKDLKVGSVEEFQGQERSVI DLKVGSVEEFQGQERSVILISTVRSSQSFV K V G E R S 0 1 0 0 0 2 3 2 0 0 0 0 0 1 0 1 0 0 0 2 0 0 12 0 1363.6368 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 800 811 MOV10 Putative helicase MOV-10 yes no 2 0.0002099 80.763 2 1 1.2917 1.2649 12.229 3 Median 1.3473 1.3525 9.4791 2 0 Median 1.2917 1.133 NaN 1 0 Median 33052000 13798000 19254000 31202000 13125000 18077000 1850200 673510 1176700 14058 1102 14441 37365;37366;37367 58699;58700;58701 58700 3 VGTDLLEEEITK GIRKLQIQCVVEDDKVGTDLLEEEITKFEE DDKVGTDLLEEEITKFEEHVQSVDIAAFNK K V G T K F 0 0 0 1 0 0 3 1 0 1 2 1 0 0 0 0 2 0 0 1 0 0 12 0 1345.6977 D3DWK1;B2RAR6;E9PRY8;P29692;Q9BW34;E9PQZ1;H0YE72;H0YE58 D3DWK1 620 631 EEF1D Elongation factor 1-delta yes no 2 4.5474E-16 121.61 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14059 875 14442 37368;37369 58702;58703 58703 2 VGTFFSEVK KVSGHVITDIVEGKKVGTFFSEVKPAGPTV IVEGKKVGTFFSEVKPAGPTVEQQGEMARS K V G V K P 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 1 1 0 0 2 0 0 9 0 1012.5229 P54886 P54886 349 357 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0042207 69.812 2 2 1.9613 2.4155 25.948 3 Plateau 2.1016 2.3222 12.468 2 0 Median 1.9613 1.5217 NaN 1 0 Median 123240000 37766000 85478000 119770000 36523000 83246000 3474900 1243000 2231900 14060 1611 14443 37370;37371;37372;37373 58704;58705;58706;58707;58708 58706 5 VGTLDVLVGLSDELAK NNLAVTSKFNIPDLKVGTLDVLVGLSDELA GTLDVLVGLSDELAKLDAFVEGVVKKVAQY K V G A K L 1 0 0 2 0 0 1 2 0 0 4 1 0 0 0 1 1 0 0 3 0 0 16 0 1627.9033 A0A024R9I0;P21283 A0A024R9I0 45 60 ATP6V1C1 V-type proton ATPase subunit C 1 yes no 2 0.00025298 69.451 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4238600 0 4238600 4238600 0 4238600 0 0 0 14061 279 14444 37374;37375 58709;58710 58710 2 VGTSFSIPVVSDVR IKNPVSDHFPVGCMKVGTSFSIPVVSDVRE KVGTSFSIPVVSDVRELVPSSDPIVFVVGA K V G V R E 0 1 0 1 0 0 0 1 0 1 0 0 0 1 1 3 1 0 0 4 0 0 14 0 1461.7827 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2 A8K6D2 174 187 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 7.6534E-15 134.98 2 1 1.0952 1.263 1.5379 2 Median 1.0952 1.263 1.5379 2 0 Median NaN NaN NaN 0 0 Median 368540000 153910000 214620000 332530000 153910000 178620000 36006000 0 36006000 14062 759 14445 37376;37377;37378 58711;58712;58713;58714;58715 58715 5 VGTVIGSNK DDKENRYWIFRSWGRVGTVIGSNKLEQMPS FRSWGRVGTVIGSNKLEQMPSKEDAIEHFM R V G N K L 0 0 1 0 0 0 0 2 0 1 0 1 0 0 0 1 1 0 0 2 0 0 9 0 873.49198 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 592 600 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 2.4592E-05 114.28 1 0.72156 0.70953 NaN 1 Median 0.72156 0.70953 NaN 1 0 Median NaN NaN NaN 0 0 Median 23637000 12891000 10746000 23637000 12891000 10746000 0 0 0 14063 139 14446 37379 58716;58717 58716 2 VGVIGFPNVGK KLLGGFQETCSKAIRVGVIGFPNVGKSSII KAIRVGVIGFPNVGKSSIINSLKQEQMCNV R V G G K S 0 0 1 0 0 0 0 3 0 1 0 1 0 1 1 0 0 0 0 3 0 0 11 0 1085.6233 A0A024R2Z6;Q9BVP2 A0A024R2Z6 245 255 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 1.8338E-05 105.57 2 2 0.96853 0.92562 2.4093 4 Median 0.81891 0.93202 4.1149 2 0 Median 1.1263 0.92562 0.087265 2 0 Median 387750000 217460000 170280000 321700000 186730000 134970000 66048000 30730000 35318000 14064 125 14447 37380;37381;37382;37383 58718;58719;58720;58721;58722;58723;58724;58725 58721 8 VGVLAASMEAK ETPHSPGVEDAPIAKVGVLAASMEAKASSQ PIAKVGVLAASMEAKASSQQEKEDKPAETK K V G A K A 3 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 0 2 0 0 11 0 1074.5743 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 340 350 LIMA1 LIM domain and actin-binding protein 1 yes no 2 9.7697E-05 92.732 2 2.6983 2.9616 NaN 1 Median 2.6983 2.9616 NaN 1 0 Median NaN NaN NaN 0 0 Median 104900000 16872000 88029000 104900000 16872000 88029000 0 0 0 14065 1010 14448 37384;37385 58726;58727;58728 58726 800 3 VGVNGFGR ______________________________ ______________________________ K V G G R I 0 1 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 2 0 0 8 0 804.42424 V9HVZ4;P04406;Q2TSD0;B4DRV9 V9HVZ4 6 13 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 0.0058891 86.866 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92313000 0 92313000 92313000 0 92313000 0 0 0 14066 1442 14449 37386;37387 58729;58730 58730 2 VGVPTVDLDAQGR KYSNMEQSLFTRFVRVGVPTVDLDAQGRAR VRVGVPTVDLDAQGRARASLCNLYNWRYKN R V G G R A 1 1 0 2 0 1 0 2 0 0 1 0 0 0 1 0 1 0 0 3 0 0 13 0 1325.6939 B0AZM4;A8K6F0;A0A024R9L1;O60306 B0AZM4 1126 1138 AQR Intron-binding protein aquarius yes no 2 0.0035111 49.5 1 1.2596 1.2624 NaN 1 Median 1.2596 1.2624 NaN 1 0 Median NaN NaN NaN 0 0 Median 17240000 7863200 9376500 17240000 7863200 9376500 0 0 0 14067 282 14450 37388 58731;58732 58731 2 VGVVGLPNVGK LGNYCRLGEVRTHIRVGVVGLPNVGKSSLI THIRVGVVGLPNVGKSSLINSLKRSRACSV R V G G K S 0 0 1 0 0 0 0 3 0 0 1 1 0 0 1 0 0 0 0 4 0 0 11 0 1037.6233 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 255 265 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.060443 33.263 1 0.8239 0.70417 NaN 1 Median NaN NaN NaN 0 0 Median 0.8239 0.70417 NaN 1 0 Median 1421300 828660 592590 0 0 0 1421300 828660 592590 14068 291 14451 37389 58733 58733 1 VGWSTMQASLDLGTDK KHYYEVSCHDQGLCRVGWSTMQASLDLGTD GWSTMQASLDLGTDKFGFGFGGTGKKSHNK R V G D K F 1 0 0 2 0 1 0 2 0 0 2 1 1 0 0 2 2 1 0 1 0 0 16 0 1707.8138 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 66 81 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0035461 48.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14069 452 14452 37390 58734 58734 319 1 VHDLALR ______________________________ MDLGECLKVHDLALRADYEIASKEQGFFFE K V H L R A 1 1 0 1 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 822.47119 B3KRR1;B3KSL5;A0A0A6YYJ8;Q9Y383 B3KRR1 9 15 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 2 0.026711 76.847 1 0.73365 0.80644 NaN 1 Median 0.73365 0.80644 NaN 1 0 Median NaN NaN NaN 0 0 Median 40657000 22373000 18284000 40657000 22373000 18284000 0 0 0 14070 494 14453 37391 58735;58736 58735 2 VHELNEEIGK TQEEISAEVAAKAERVHELNEEIGKLLAKV AKAERVHELNEEIGKLLAKVEQLGAEGNVE R V H G K L 0 0 1 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1166.5932 B3KRR1;B3KSL5;A0A0A6YYJ8;Q9Y383;B8ZZ09;B8ZZ10;A8MYV2;D3DU41;Q1W6G4;Q53G47;Q9NQ29 B3KRR1 73 82 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 no no 2 1.1956E-05 123.42 1 1 0.60364 0.5593 52.27 2 Median 0.74567 0.8094 NaN 1 0 Median 0.48866 0.38648 NaN 1 0 Median 50053000 26956000 23097000 45899000 24196000 21704000 4153700 2760000 1393700 14071 494;800 14454 37392;37393 58737;58738;58739 58737 3 VHELQGNAPSDPDAVSAEEALK HVKKTTPELEIVLQKVHELQGNAPSDPDAV APSDPDAVSAEEALKYLLHLVDVNELYDHS K V H L K Y 4 0 1 2 0 1 3 1 1 0 2 1 0 0 2 2 0 0 0 2 0 0 22 0 2276.0921 Q8N516;Q4LE38;O95163;F5H2T0;B3KXE7;B4E3I9;Q68DI5;B3KNB2 Q8N516 858 879 IKBKAP;IKBKAP variant protein;DKFZp781H1425 Elongator complex protein 1 yes no 3 5.6604E-09 52.79 1 1.7225 1.7578 NaN 1 Median 1.7225 1.7578 NaN 1 0 Median NaN NaN NaN 0 0 Median 12026000 5173600 6852500 12026000 5173600 6852500 0 0 0 14072 1419 14455 37394 58740;58741 58741 2 VHFEESSK FYRDIISIAEDEDLRVHFEESSKLEDLLRK AEDEDLRVHFEESSKLEDLLRKVRAKETRK R V H S K L 0 0 0 0 0 0 2 0 1 0 0 1 0 1 0 2 0 0 0 1 0 0 8 0 961.45051 A0A024R1N4;P12956;B1AHC9;B4DE32;B2RDN9;B4E356 A0A024R1N4 231 238 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0010053 117.4 1 0.40036 0.43291 NaN 1 Median 0.40036 0.43291 NaN 1 0 Median NaN NaN NaN 0 0 Median 42858000 31204000 11654000 42858000 31204000 11654000 0 0 0 14073 82 14456 37395 58742 58742 1 VHFTAER GANLSVLLVEHALSKVHFTAERSSYYKSLL LVEHALSKVHFTAERSSYYKSLLSAEEAAK K V H E R S 1 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 7 0 858.4348 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299 A0A140VK49 630 636 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.010731 110.34 2 2 1.1781 1.1646 56.451 4 Median 1.5501 1.7339 3.2011 2 0 Median 0.78858 0.67314 24.447 2 0 Median 119110000 46910000 72199000 111070000 42581000 68486000 8042000 4329100 3712900 14074 618 14457 37396;37397;37398;37399 58743;58744;58745;58746;58747;58748 58746 6 VHGPGIQSGTTNK FQVPVTEGCDPSRVRVHGPGIQSGTTNKPN VRVHGPGIQSGTTNKPNKFTVETRGAGTGG R V H N K P 0 0 1 0 0 1 0 3 1 1 0 1 0 0 1 1 2 0 0 1 0 0 13 0 1294.663 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1360 1372 FLNA;FLJ00119 Filamin-A yes no 2 7.7021E-06 108.43 2 1.1051 1.2189 NaN 1 Median 1.1051 1.2189 NaN 1 0 Median NaN NaN NaN 0 0 Median 4677600 1107000 3570600 4677600 1107000 3570600 0 0 0 14075 1504 14458 37400;37401 58749;58750 58750 2 VHGPGIQSGTTNKPNK FQVPVTEGCDPSRVRVHGPGIQSGTTNKPN HGPGIQSGTTNKPNKFTVETRGAGTGGLGL R V H N K F 0 0 2 0 0 1 0 3 1 1 0 2 0 0 2 1 2 0 0 1 0 0 16 1 1633.8536 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1360 1375 FLNA;FLJ00119 Filamin-A yes no 3;4 5.3285E-18 132.51 3 1 1.5235 1.7504 28.387 4 Median 1.5242 1.7504 2.1539 3 0 Plateau 3.5488 3.0544 NaN 1 0 Median 28587000 10541000 18046000 25174000 9825000 15349000 3413200 716230 2696900 14076 1504 14459 37402;37403;37404;37405 58751;58752;58753;58754;58755;58756;58757 58754 7 VHIDIGADGR ENDIANFFSPLNPIRVHIDIGADGRATGEA LNPIRVHIDIGADGRATGEADVEFVTHEDA R V H G R A 1 1 0 2 0 0 0 2 1 2 0 0 0 0 0 0 0 0 0 1 0 0 10 0 1051.5411 Q53F48;A0A024QZK8;P31942;A0A024QZP1;B4DHY1 Q53F48 223 232 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 2 1.7051E-06 111.46 2 2 2.0984 2.3955 31.79 3 Plateau 2.0984 2.3955 NaN 1 0 Median 1.6296 1.3869 5.506 2 0 Median 101990000 30064000 71931000 92242000 26472000 65770000 9752300 3591700 6160600 14077 23 14460 37406;37407;37408;37409 58758;58759;58760;58761;58762;58763 58760 6 VHIEFTEGEDK KKGQNLAKITQQMPKVHIEFTEGEDKITLE QMPKVHIEFTEGEDKITLEGPTEDVNVAQE K V H D K I 0 0 0 1 0 0 3 1 1 1 0 1 0 1 0 0 1 0 0 1 0 0 11 0 1302.6092 A0A024R4E5;Q00341;B2R5V9;B4DKR8;H0Y394;Q6ZS03;Q96CF6;H7C0A4 A0A024R4E5 397 407 HDLBP Vigilin yes no 2 0.0013607 83.862 1 1 1.13 0.9579 NaN 1 Median NaN NaN NaN 0 0 Median 1.13 0.9579 NaN 1 0 Median 14586000 762480 13823000 13129000 0 13129000 1456600 762480 694080 14078 154 14461 37410;37411 58764;58765 58764 2 VHIEIGPDGR ENDIYNFFSPLNPVRVHIEIGPDGRVTGEA LNPVRVHIEIGPDGRVTGEADVEFATHEDA R V H G R V 0 1 0 1 0 0 1 2 1 2 0 0 0 0 1 0 0 0 0 1 0 0 10 0 1091.5724 A0A024R7T3;P52597;B4DKS8;E9PCY7;G8JLB6;P31943;H0YB39;H0YBG7;Q68DG4;H0YBD7;B4DP51;P55795;B4DFK9;B4DP00 E9PCY7 317 326 HNRPF;HNRNPF;HNRNPH1;DKFZp686A15170;HNRNPH2 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 3.8485E-11 120.12 6 3 1.4242 1.5538 33.006 8 Median 1.4436 1.6236 4.0713 5 0 Median 1.0197 0.87637 5.0021 3 0 Median 558740000 197870000 360870000 537560000 187720000 349840000 21186000 10152000 11035000 14079 1231;234;1617 14462 37412;37413;37414;37415;37416;37417;37418;37419;37420 58766;58767;58768;58769;58770;58771;58772;58773;58774;58775;58776;58777;58778;58779;58780;58781 58770 15 VHIGQVIMSIR GMRGAFGKPQGTVARVHIGQVIMSIRTKLQ TVARVHIGQVIMSIRTKLQNKEHVIEALRR R V H I R T 0 1 0 0 0 1 0 1 1 3 0 0 1 0 0 1 0 0 0 2 0 0 11 0 1251.7122 F8W7C6;A0A087WV22;H7C123;H7C2C5;X1WI28;X5D2T3;P27635;Q96L21 X1WI28 129 139 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like no no 2;3 0.00050272 63.32 5 4 1.407 1.3224 25.397 6 Median 1.4294 1.6592 8.1457 3 0 Plateau 1.1837 0.96848 14.555 3 0 Median 545320000 225080000 320240000 513890000 211380000 302510000 31424000 13699000 17726000 14080 1524;1266 14463;14464 37421;37422;37423;37424;37425;37426;37427;37428;37429 58782;58783;58784;58785;58786;58787;58788;58789;58790;58791;58792;58793;58794;58795;58796;58797;58798 58787 972 17 VHILDTESFETTFGPK PMSLLHDRIRPHNLKVHILDTESFETTFGP HILDTESFETTFGPKSQRKRPNLFASDMQS K V H P K S 0 0 0 1 0 0 2 1 1 1 1 1 0 2 1 1 3 0 0 1 0 0 16 0 1819.8992 Q5T0F3;Q13823 Q5T0F3 132 147 GNL2 Nucleolar GTP-binding protein 2 yes no 2;3 9.6497E-06 85.163 4 1.2425 1.0644 13.614 4 Linear NaN NaN NaN 0 0 Median 1.2425 1.0644 13.614 4 0 Linear 37098000 17299000 19799000 0 0 0 37098000 17299000 19799000 14081 1721 14465 37430;37431;37432;37433 58799;58800;58801;58802;58803 58799 5 VHILGSFQNIK IENVTRTRIVLADVKVHILGSFQNIKMART ADVKVHILGSFQNIKMARTAICNLILGNPP K V H I K M 0 0 1 0 0 1 0 1 1 2 1 1 0 1 0 1 0 0 0 1 0 0 11 0 1254.7085 B2R823;Q9NRX1 B2R823 209 219 PNO1 RNA-binding protein PNO1 yes no 2 0.0017197 65.347 1 1 1.2173 1.1253 11.209 2 Median 1.1227 1.2181 NaN 1 0 Median 1.32 1.0395 NaN 1 0 Median 56654000 28961000 27693000 39133000 20982000 18151000 17521000 7978400 9542700 14082 858 14466 37434;37435 58804;58805;58806 58804 3 VHIPNDDAQFDASHCDSDK GTHTSDEQNHLVVARVHIPNDDAQFDASHC NDDAQFDASHCDSDKGEFGGFGSVTGKIEC R V H D K G 2 0 1 5 1 1 0 0 2 1 0 1 0 1 1 2 0 0 0 1 0 0 19 0 2169.9022 Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP01;C9J7L0 Q6FHQ0 83 101 RBBP7 Histone-binding protein RBBP7 yes no 3 0.044954 22.571 1 0.99283 1.0117 NaN 1 Median 0.99283 1.0117 NaN 1 0 Median NaN NaN NaN 0 0 Median 30849000 16020000 14829000 30849000 16020000 14829000 0 0 0 14083 1771 14467 37436 58807 58807 0 VHLDLWVK EHYKKLAEEQQKQYKVHLDLWVKSLSPQDR EQQKQYKVHLDLWVKSLSPQDRAAYKEYIS K V H V K S 0 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 0 1 0 2 0 0 8 0 1008.5757 E9PKP7;P17480;A8K962;O00164;B4DLB0;H0YDH7 E9PKP7 591 598 UBTF Nucleolar transcription factor 1 yes no 2 0.0022675 101.33 2 1.4222 1.1366 7.6646 2 Median NaN NaN NaN 0 0 Median 1.4222 1.1366 7.6646 2 0 Median 24465000 10216000 14249000 0 0 0 24465000 10216000 14249000 14084 1244 14468 37437;37438 58808;58809;58810;58811 58811 4 VHLEDVFQLFK ADAVHFRVLMKLFIKVHLEDVFQLFKFCSV LFIKVHLEDVFQLFKFCSVLWTYGSSLSNP K V H F K F 0 0 0 1 0 1 1 0 1 0 2 1 0 2 0 0 0 0 0 2 0 0 11 0 1373.7343 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1 B2RWN5 855 865 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.13E-13 150.08 2 2 1.0488 0.93915 5.9263 4 Median 0.96904 0.98541 6.1464 2 0 Median 1.1261 0.91368 3.2345 2 0 Median 98690000 48010000 50681000 44114000 23862000 20252000 54577000 24148000 30429000 14085 897 14469 37439;37440;37441;37442 58812;58813;58814;58815;58816 58814 5 VHLLCLLANGFYR AMKRFNKGVHEDTHKVHLLCLLANGFYRNN HKVHLLCLLANGFYRNNICSQPDLHAIGLS K V H Y R N 1 1 1 0 1 0 0 1 1 0 4 0 0 1 0 0 0 0 1 1 0 0 13 0 1574.8392 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPI9;D2CPJ0 A0A024R2M8 208 220 XPC DNA repair protein complementing XP-C cells yes no 3 4.125E-05 59.418 3 2 0.85236 0.72934 34.888 3 Median 0.41439 0.41844 NaN 1 0 Median 0.88144 0.76205 6.2036 2 0 Median 18245000 10921000 7323300 8071400 5783100 2288300 10173000 5138200 5034900 14086 118 14470 37443;37444;37445;37446;37447 58817;58818;58819;58820;58821 58818 5 VHLLGR SETTTSLVLERSLNRVHLLGRVGQDPVLRQ LVLERSLNRVHLLGRVGQDPVLRQVEGKNP R V H G R V 0 1 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 6 0 693.42859 Q567R6;A4D1U3;Q04837;A0A0G2JLD8;E7EUY5;B7Z268;C9K0U8 Q567R6 33 38 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 0.025304 130.51 2 1 0.84806 0.9803 29.485 3 Median 0.8525 0.98117 0.12556 2 0 Median 0.70709 0.58878 NaN 1 0 Median 399070000 210560000 188510000 392820000 206830000 185990000 6245600 3726600 2518900 14087 666 14471 37448;37449;37450 58822;58823;58824 58823 3 VHLPSSIYR APSNSGADLLCQRLRVHLPSSIYRLLAPSR LCQRLRVHLPSSIYRLLAPSRDIRMVPEDI R V H Y R L 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1 2 0 0 1 1 0 0 9 0 1070.5873 B7Z700;Q5JR04;Q9HCE1 B7Z700 507 515 MOV10 Putative helicase MOV-10 yes no 2 0.035569 43.808 1 1.389 1.4446 NaN 1 Median 1.389 1.4446 NaN 1 0 Median NaN NaN NaN 0 0 Median 20994000 7010100 13983000 20994000 7010100 13983000 0 0 0 14088 1102 14472 37451 58825 58825 1 VHLVGIDIFTGK VEMSTSKTGKHGHAKVHLVGIDIFTGKKYE HAKVHLVGIDIFTGKKYEDICPSTHNMDVP K V H G K K 0 0 0 1 0 0 0 2 1 2 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1297.7394 I3L397;I3L504;P63241;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 56 67 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like yes no 2;3 4.5873E-07 136.96 4 2 3.1214 3.2563 37.534 5 Median 3.4205 3.8235 9.2391 3 0 Plateau 2.1535 1.7615 5.6322 2 0 Median 230540000 52399000 178140000 174680000 32526000 142150000 55856000 19873000 35983000 14089 1322 14473 37452;37453;37454;37455;37456;37457 58826;58827;58828;58829;58830;58831;58832;58833;58834 58833 9 VHPAVVIR VMATVKKGKPELRKKVHPAVVIRQRKSYRR KPELRKKVHPAVVIRQRKSYRRKDGVFLYF K V H I R Q 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 3 0 0 8 0 889.54977 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;J3KTJ3;C9JD32;J3QQT9 Q9BTQ7 70 77 RPL23 60S ribosomal protein L23 yes no 2;3 0.0014569 91.14 6 4 0.83602 0.96298 27.77 9 Median 0.79127 0.88001 8.3047 5 0 Median 1.6425 1.4084 10.188 4 0 Median 3971900000 1964000000 2007900000 3041800000 1618000000 1423800000 930080000 346030000 584040000 14090 84 14474 37458;37459;37460;37461;37462;37463;37464;37465;37466;37467 58835;58836;58837;58838;58839;58840;58841;58842;58843;58844;58845;58846;58847 58840 13 VHSDFTAAATR KNLPERLLRERAIFKVHSDFTAAATRGAMA AIFKVHSDFTAAATRGAMAVIDGNVMAINP K V H T R G 3 1 0 1 0 0 0 0 1 0 0 0 0 1 0 1 2 0 0 1 0 0 11 0 1174.5731 I3L2B0;K7EIG1;O75153 I3L2B0 423 433 CLUH Clustered mitochondria protein homolog yes no 2 7.2104E-05 96.342 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9505000 0 9505000 9505000 0 9505000 0 0 0 14091 1321 14475 37468 58848 58848 1 VHSEVASLQEK SSQVCFTQNNYIQVRVHSEVASLQEKQHTT IQVRVHSEVASLQEKQHTTTNVFHFTFMSE R V H E K Q 1 0 0 0 0 1 2 0 1 0 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1225.6303 Q9Y305;Q9H2R8 Q9Y305 373 383 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 4.7849E-79 211.78 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25484000 0 25484000 24384000 0 24384000 1099900 0 1099900 14092 2130 14476 37469;37470 58849;58850 58849 2 VHSFTHEAPNQR QLLAETFHHKRCVLKVHSFTHEAPNQRRRL VLKVHSFTHEAPNQRRRLLLCSAATDGSLA K V H Q R R 1 1 1 0 0 1 1 0 2 0 0 0 0 1 1 1 1 0 0 1 0 0 12 0 1421.68 A0A087X295;Q9NNW5;E9PDU5;B4E256;Q8NDH0;B3KRR8;E9PBK6;B4DLP3;Q6PKC6;Q6AZD6;Q9H9M3 A0A087X295 946 957 WDR6;DKFZp434F1720 WD repeat-containing protein 6 yes no 3 0.0037697 36.847 1 1.0727 1.155 NaN 1 Median 1.0727 1.155 NaN 1 0 Median NaN NaN NaN 0 0 Median 3092500 1423700 1668800 3092500 1423700 1668800 0 0 0 14093 451 14477 37471 58851;58852 58851 2 VHSPSGALEECYVTEIDQDK FAVSLNGAKGAIDAKVHSPSGALEECYVTE GALEECYVTEIDQDKYAVRFIPRENGVYLI K V H D K Y 1 0 0 2 1 1 3 1 1 1 1 1 0 0 1 2 1 0 1 2 0 0 20 0 2276.0267 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5 P21333 2368 2387 FLNA;FLJ00119 Filamin-A yes no 3 5.8496E-05 41.912 2 4.6694 3.6592 NaN 1 Median NaN NaN NaN 0 0 Median 4.6694 3.6592 NaN 1 0 Median 6666700 914240 5752500 0 0 0 6666700 914240 5752500 14094 1504 14478 37472;37473 58853;58854 58854 2 VHVIFNYK NIMFGPDICGPGTKKVHVIFNYKGKNVLIN CGPGTKKVHVIFNYKGKNVLINKDIRCKDD K V H Y K G 0 0 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 1 2 0 0 8 0 1018.56 B4DHR1;Q53G71;V9HW88;P27797;K7EJB9;B4E2Y9 B4DHR1 128 135 HEL-S-99n;CALR Calreticulin yes no 2 0.051482 49.358 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1144400 1144400 0 0 0 0 1144400 1144400 0 14095 978 14479 37474 58855 58855 1 VHVPARPYR NSPCTIIIGKAHTEKVHVPARPYRVLNNFI KAHTEKVHVPARPYRVLNNFISNQKMDFKE K V H Y R V 1 2 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 1 2 0 0 9 1 1093.6145 P46013;Q70L73 P46013 727 735 MKI67 Antigen KI-67 no no 3 4.2301E-05 96.253 2 1.5447 1.7064 3.3711 2 Median 1.5447 1.7064 3.3711 2 0 Median NaN NaN NaN 0 0 Median 55514000 22428000 33086000 55514000 22428000 33086000 0 0 0 14096 1569;1864 14480 37475;37476 58856;58857;58858;58859 58856 4 VIAGLYQR RILELSGSSSEDSEKVIAGLYQRAFQHLSE SSEDSEKVIAGLYQRAFQHLSEAVQAAEEE K V I Q R A 1 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 8 0 918.5287 P78527 P78527 3373 3380 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.030997 51.572 1 1 0.65441 0.64714 69.679 2 Median 0.93136 1.0592 NaN 1 0 Median 0.45982 0.39538 NaN 1 0 Median 125670000 66385000 59280000 118910000 61891000 57022000 6752200 4494200 2258000 14097 1665 14481 37477;37478 58860;58861 58860 2 VIAHTQMR EKDFSSMKKYCQVIRVIAHTQMRLLPLRQK KYCQVIRVIAHTQMRLLPLRQKKAHLMEIQ R V I M R L 1 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 8 0 954.50692 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;H7C3M2;B5MCW2 P39023 162 169 RPL3;rpl3 60S ribosomal protein L3 yes no 2;3 0.0024661 81.191 2 2 1.086 0.93372 20.374 3 Median 0.6303 0.66004 NaN 1 0 Median 1.0992 0.93921 0.82954 2 0 Median 27394000 16267000 11127000 15478000 10643000 4834600 11916000 5623600 6292200 14098 1554 14482 37479;37480;37481;37482 58862;58863;58864;58865;58866;58867 58862 6 VIAPNPAQLQGQR SATNTTLPHMLMSQRVIAPNPAQLQGQRGP QRVIAPNPAQLQGQRGPPKPGLQSSSSVPC R V I Q R G 2 1 1 0 0 3 0 1 0 1 1 0 0 0 2 0 0 0 0 1 0 0 13 0 1390.7681 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR30 A0A0U1RRM1 265 277 GATAD2B Transcriptional repressor p66-beta yes no 2 9.2447E-09 115.86 1 2 2.0537 1.7103 39.086 3 Median 0.81167 0.92407 NaN 1 0 Median 2.1342 1.8064 7.7372 2 0 Median 123230000 63348000 59880000 109980000 59005000 50972000 13251000 4343300 8907700 14099 591 14483 37483;37484;37485 58868;58869;58870 58868 3 VIAQLSECEK GKDDYKKQKETELNKVIAQLSECEKHKEKI TELNKVIAQLSECEKHKEKINEDMRLMRQD K V I E K H 1 0 0 0 1 1 2 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1175.5856 Q92878 Q92878 983 992 RAD50 DNA repair protein RAD50 yes yes 2 0.049829 46.819 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3715200 3715200 0 3715200 3715200 0 0 0 0 14100 1953 14484 37486 58871 58871 1 VIDDTNITR AMRQSVENDIHGLRKVIDDTNITRLQLETE IHGLRKVIDDTNITRLQLETEIEALKEELL K V I T R L 0 1 1 2 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 1 0 0 9 0 1045.5404 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 188 196 KRT18 Keratin, type I cytoskeletal 18 yes no 2 2.3878E-05 114.89 2 2 1.3149 1.3269 4.195 4 Median 1.0825 1.2726 2.2261 2 0 Median 1.5748 1.3637 0.18741 2 0 Median 999100000 477160000 521940000 914060000 443560000 470500000 85043000 33606000 51437000 14101 316 14485 37487;37488;37489;37490 58872;58873;58874;58875;58876;58877;58878;58879;58880;58881 58872 10 VIDFDENTALDDAEEESFR DTVTWDEYNIQMYDRVIDFDENTALDDAEE DENTALDDAEEESFRKLHLKDKKRFEKANQ R V I F R K 2 1 1 4 0 0 4 0 0 1 1 0 0 2 0 1 1 0 0 1 0 0 19 0 2213.9601 Q14257;H0YL43 Q14257 130 148 RCN2 Reticulocalbin-2 yes no 2 0.0048887 34.685 2 1.3734 1.3667 NaN 1 Median 1.3734 1.3667 NaN 1 0 Median NaN NaN NaN 0 0 Median 11240000 3409300 7830300 11240000 3409300 7830300 0 0 0 14102 1730 14486 37491;37492 58882;58883 58883 2 VIDFDENTALDDAEEESFRK DTVTWDEYNIQMYDRVIDFDENTALDDAEE ENTALDDAEEESFRKLHLKDKKRFEKANQD R V I R K L 2 1 1 4 0 0 4 0 0 1 1 1 0 2 0 1 1 0 0 1 0 0 20 1 2342.055 Q14257;H0YL43 Q14257 130 149 RCN2 Reticulocalbin-2 yes no 3 1.4701E-09 92.492 2 2 1.2133 1.2186 17.157 4 Median 1.1664 1.3864 13.096 2 0 Median 1.2703 1.0872 10.985 2 0 Median 171360000 79421000 91935000 144940000 68876000 76065000 26416000 10546000 15870000 14103 1730 14487 37493;37494;37495;37496 58884;58885;58886;58887;58888;58889;58890;58891;58892 58885 9 VIDPATATSVDLR YSSLLSPMSVNAVMKVIDPATATSVDLRDI MKVIDPATATSVDLRDIKIVKKLGGTIDDC K V I L R D 2 1 0 2 0 0 0 0 0 1 1 0 0 0 1 1 2 0 0 2 0 0 13 0 1356.7249 B7Z9L0;A8K3C3;P50991;B7Z2F4;B7Z2Z8 B7Z9L0 138 150 CCT4 T-complex protein 1 subunit delta yes no 2 1.5567E-05 94.297 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20601000 0 20601000 18901000 0 18901000 1699600 0 1699600 14104 721 14488 37497;37498 58893;58894 58893 2 VIDPVAPR VVNMEWDKIWAFNKKVIDPVAPRYVALLKK IWAFNKKVIDPVAPRYVALLKKEVIPVNVP K V I P R Y 1 1 0 1 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 8 0 865.50215 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 499 506 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.009492 74.415 1 1.824 2.0225 NaN 1 Median 1.824 2.0225 NaN 1 0 Median NaN NaN NaN 0 0 Median 42663000 14834000 27829000 42663000 14834000 27829000 0 0 0 14105 1454 14489 37499 58895;58896 58895 2 VIDQQNGLYR NCMYQACPTQDCNKKVIDQQNGLYRCEKCD DCNKKVIDQQNGLYRCEKCDTEFPNFKYRM K V I Y R C 0 1 1 1 0 2 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1204.62 P27694 P27694 490 499 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 6.4475E-06 107.9 2 1 0.52197 0.51349 39.669 3 Median 0.55039 0.55987 12.229 2 0 Median 0.32473 0.28633 NaN 1 0 Median 26118000 18028000 8090200 24714000 17078000 7635500 1404600 949890 454720 14106 1525 14490 37500;37501;37502 58897;58898;58899;58900;58901;58902;58903 58898 7 VIDRFDEGEDGEGDFLVVGSIR EADPEADPEEATAARVIDRFDEGEDGEGDF GEDGEGDFLVVGSIRKLASASLLDTDKRYC R V I I R K 0 2 0 4 0 0 3 4 0 2 1 0 0 2 0 1 0 0 0 3 0 0 22 1 2423.1605 Q9NY61 Q9NY61 36 57 AATF Protein AATF yes yes 3 1.9041E-11 88.555 2 2 1.0547 1.0002 7.1648 4 Median 0.88036 0.98111 0.15962 2 0 Median 1.2349 1.0782 8.0553 2 0 Median 126020000 64418000 61599000 77771000 40758000 37013000 48246000 23660000 24586000 14107 2080 14491 37503;37504;37505;37506 58904;58905;58906;58907;58908;58909;58910;58911 58907 8 VIDSSDVVVQVLDAR YKKGQSKRIWGELYKVIDSSDVVVQVLDAR VIDSSDVVVQVLDARDPMGTRSPHIETYLK K V I A R D 1 1 0 3 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 5 0 0 15 0 1613.8625 Q5T0F3;Q13823;B4DPI9 Q5T0F3 213 227 GNL2 Nucleolar GTP-binding protein 2 yes no 2 3.3755E-32 151.55 2 2 1.3036 1.0985 0.34925 2 Median NaN NaN NaN 0 0 Median 1.3036 1.0985 0.34925 2 0 Median 72960000 48511000 24449000 31636000 31636000 0 41324000 16875000 24449000 14108 1721 14492 37507;37508;37509;37510 58912;58913;58914;58915;58916;58917;58918;58919 58913 8 VIEASDVVLEVLDAR GKQNSKKLYCQELKKVIEASDVVLEVLDAR VIEASDVVLEVLDARDPLGCRCPQVEEAIV K V I A R D 2 1 0 2 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 4 0 0 15 0 1626.8829 A0A024R2Z6;Q9BVP2 A0A024R2Z6 125 139 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 3.2802E-84 216.03 3 0.82642 0.94535 5.0595 2 Median 0.82642 0.94535 5.0595 2 0 Median NaN NaN NaN 0 0 Median 302800000 167830000 134970000 302800000 167830000 134970000 0 0 0 14109 125 14493 37511;37512;37513 58920;58921;58922;58923 58922 4 VIEEQLEPAVEK VIEPQYFGLAYLFRKVIEEQLEPAVEKISI FRKVIEEQLEPAVEKISIMAERLANQFAIY K V I E K I 1 0 0 0 0 1 4 0 0 1 1 1 0 0 1 0 0 0 0 2 0 0 12 0 1382.7293 E5KNY5;P42704 E5KNY5 1225 1236 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00099582 82.954 1 1 1.3468 1.0509 NaN 1 Median NaN NaN NaN 0 0 Median 1.3468 1.0509 NaN 1 0 Median 12326000 10482000 1844000 8684600 8684600 0 3641200 1797200 1844000 14110 1207 14494 37514;37515 58924;58925;58926 58924 3 VIEFAAK KYVMVVYKREPAVERVIEFAAKFVTSFHQS KREPAVERVIEFAAKFVTSFHQSDMEDDEE R V I A K F 2 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 776.44324 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 68 74 NCAPG Condensin complex subunit 3 yes no 2 0.027742 73.039 2 1 0.92373 1.0866 16.03 3 Median 0.87111 1.016 9.5092 2 0 Median 1.6589 1.3072 NaN 1 0 Median 528660000 283360000 245310000 517740000 279130000 238610000 10924000 4221500 6702100 14111 1995 14495 37516;37517;37518 58927;58928;58929;58930;58931 58929 5 VIELFSVCTNEDPK RPPINMEELDESYQKVIELFSVCTNEDPKD KVIELFSVCTNEDPKDRPSAAHIVEALETD K V I P K D 0 0 1 1 1 0 2 0 0 1 1 1 0 1 1 1 1 0 0 2 0 0 14 0 1649.7971 V9HWH0;Q96KB5 V9HWH0 293 306 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 2 0.0055047 55.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14112 1975 14496 37519 58932 58932 1 VIEPGCVR HLDGRQIVVKYPPGKVIEPGCVRVVRGEGM VKYPPGKVIEPGCVRVVRGEGMPQYRNPFE K V I V R V 0 1 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 8 0 928.48004 A0A024R6S1;O60884 A0A024R6S1 303 310 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 0.025194 62.659 1 1.5431 1.6292 NaN 1 Median 1.5431 1.6292 NaN 1 0 Median NaN NaN NaN 0 0 Median 23452000 8158200 15293000 23452000 8158200 15293000 0 0 0 14113 208 14497 37520 58933 58933 1 VIESTQDLGNDLAGVMALQR LECNETKSWIREKTKVIESTQDLGNDLAGV QDLGNDLAGVMALQRKLTGMERDLVAIEAK K V I Q R K 2 1 1 2 0 2 1 2 0 1 3 0 1 0 0 1 1 0 0 2 0 0 20 0 2129.0787 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24 D6W5C0 891 910 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 8.2115E-07 72.496 1 1.6375 1.701 NaN 1 Median 1.6375 1.701 NaN 1 0 Median NaN NaN NaN 0 0 Median 13580000 6725900 6853600 13580000 6725900 6853600 0 0 0 14114 415 14498 37521 58934 58934 306 1 VIFFLPWQK PESMGLLDPATSDGRVIFFLPWQKMTIAGT ATSDGRVIFFLPWQKMTIAGTTDTPTDVTH R V I Q K M 0 0 0 0 0 1 0 0 0 1 1 1 0 2 1 0 0 1 0 1 0 0 9 0 1176.6696 B7Z601;Q53T76;A8K1Z2;A0A140VJK2;P43304;A0A0S2Z3S0;Q8WUQ0;F5GYK7 B7Z601 113 121 GPD2 Glycerol-3-phosphate dehydrogenase;Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 2 0.002884 79.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1569300 0 1569300 1569300 0 1569300 0 0 0 14115 603 14499 37522 58935 58935 1 VIFHPEFLSSTSPLLPVDYEEFVR IRRIGLFNSSADRVKVIFHPEFLSSTSPLL STSPLLPVDYEEFVRGCHLGVFPSYYEPWG K V I V R G 0 1 0 1 0 0 3 0 1 1 3 0 0 3 3 3 1 0 1 3 0 0 24 0 2820.4374 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 475 498 GYS1 Glycogen [starch] synthase, muscle yes no 3 1.9841E-36 134.87 2 1 0.45189 0.45332 38.504 3 Median 0.52719 0.60512 40.844 2 0 Median 0.45189 0.3893 NaN 1 0 Median 403600000 282650000 120950000 340680000 239200000 101480000 62920000 43450000 19470000 14116 1479 14500 37523;37524;37525 58936;58937;58938;58939 58937 4 VIFLEDDDVAAVVDGR YFASDASAVIEHTNRVIFLEDDDVAAVVDG IFLEDDDVAAVVDGRLSIHRIKRTAGDHPG R V I G R L 2 1 0 4 0 0 1 1 0 1 1 0 0 1 0 0 0 0 0 4 0 0 16 0 1731.8679 Q06210 Q06210 291 306 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 1.5248E-35 150.68 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27138000 0 27138000 27138000 0 27138000 0 0 0 14117 1688 14501 37526;37527 58940;58941;58942 58941 3 VIFTSPIK CAEYAIALALREKQRVIFTSPIKALSNQKY ALREKQRVIFTSPIKALSNQKYREMYEEFQ R V I I K A 0 0 0 0 0 0 0 0 0 2 0 1 0 1 1 1 1 0 0 1 0 0 8 0 903.54295 P42285;A8K6I4;B4E3M6 P42285 185 192 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.017078 60.682 2 0.97608 0.98777 5.1142 2 Median 0.97608 0.98777 5.1142 2 0 Median NaN NaN NaN 0 0 Median 41435000 24655000 16780000 41435000 24655000 16780000 0 0 0 14118 1563 14502 37528;37529 58943;58944 58944 2 VIGLQIFNIDTDR YQRDSDENLTDAEGKVIGLQIFNIDTDRAC GKVIGLQIFNIDTDRACAVETSVDLSEISS K V I D R A 0 1 1 2 0 1 0 1 0 3 1 0 0 1 0 0 1 0 0 1 0 0 13 0 1502.8093 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 206 218 CDCA2 Cell division cycle-associated protein 2 yes no 2 3.9797E-14 162.38 2 2 0.96415 0.90932 43.458 4 Median 0.59317 0.63072 2.846 2 0 Median 1.6306 1.3355 5.4673 2 0 Median 74544000 40778000 33766000 49098000 30834000 18264000 25446000 9943900 15502000 14119 1233 14503 37530;37531;37532;37533 58945;58946;58947;58948;58949;58950;58951 58948 7 VIGLSSDLQQVGGASAR IGVDLIMKTCFSPNRVIGLSSDLQQVGGAS GLSSDLQQVGGASARIQDALSTVLQYAEDV R V I A R I 2 1 0 1 0 2 0 3 0 1 2 0 0 0 0 3 0 0 0 2 0 0 17 0 1656.8795 B4DMT5;B3KSH1;O00303;B4DEW9;H0YDT6 B4DMT5 212 228 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2 4.2589E-13 122.66 2 2 1.1416 1.0674 22.381 4 Median 1.2501 1.3162 12.301 2 0 Median 1.0855 0.91396 4.6094 2 0 Median 72934000 34337000 38597000 61383000 28727000 32656000 11552000 5610700 5940900 14120 939 14504 37534;37535;37536;37537 58952;58953;58954;58955;58956;58957;58958 58953 7 VIGTLLGTVDK SIVDSYERRNEGAARVIGTLLGTVDKHSVE GAARVIGTLLGTVDKHSVEVTNCFSVPHNE R V I D K H 0 0 0 1 0 0 0 2 0 1 2 1 0 0 0 0 2 0 0 2 0 0 11 0 1114.6598 B4DMT5;B3KSH1;O00303 B4DMT5 66 76 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2 0.00022695 91.636 2 1.6156 1.6191 11.488 2 Median 1.6156 1.6191 11.488 2 0 Median NaN NaN NaN 0 0 Median 52496000 18662000 33834000 52496000 18662000 33834000 0 0 0 14121 939 14505 37538;37539 58959;58960;58961;58962 58961 4 VIGVLEPLDPEDYTK FTHKKQSGGAGQYGKVIGVLEPLDPEDYTK VIGVLEPLDPEDYTKLEFSDETFGSNIPKQ K V I T K L 0 0 0 2 0 0 2 1 0 1 2 1 0 0 2 0 1 0 1 2 0 0 15 0 1686.8716 C9IZ01;E5KND7;E5KND5;Q96RP9 C9IZ01 552 566 GFM1 Elongation factor G, mitochondrial yes no 2 0.00027358 76.143 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8549500 0 8549500 8549500 0 8549500 0 0 0 14122 1126 14506 37540;37541 58963;58964 58964 2 VIHDNFGIVEGLMTTVHAITATQK SNASCTTNCLAPLAKVIHDNFGIVEGLMTT EGLMTTVHAITATQKTVDGPSGKLWRDGRG K V I Q K T 2 0 1 1 0 1 1 2 2 3 1 1 1 1 0 0 4 0 0 3 0 0 24 0 2594.3527 V9HVZ4;P04406;Q2TSD0;Q0QET7;E7EUT5;A4UCT1 V9HVZ4 163 186 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3 0.0006375 30.597 1 1.8875 1.9365 NaN 1 Median 1.8875 1.9365 NaN 1 0 Median NaN NaN NaN 0 0 Median 9455000 3194800 6260200 9455000 3194800 6260200 0 0 0 14123 1442 14507 37542 58965 58965 1 VIHELANER LYVKDKLDETGVALKVIHELANERWDVCLT TGVALKVIHELANERWDVCLTLSEKGFQQI K V I E R W 1 1 1 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1079.5724 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 281 289 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 7.9357E-05 103.55 4 4 0.7654 0.72072 19.979 8 Median 0.54134 0.61239 4.7519 4 0 Median 1.025 0.8602 7.3036 4 0 Median 252740000 158360000 94383000 224930000 145010000 79923000 27813000 13354000 14460000 14124 1679 14508 37543;37544;37545;37546;37547;37548;37549;37550 58966;58967;58968;58969;58970;58971;58972;58973;58974;58975;58976 58972 11 VIHEQVNHR MYLKDKLDETGNSLKVIHEQVNHRWEVCLT TGNSLKVIHEQVNHRWEVCLTMSEKGFQQI K V I H R W 0 1 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 0 0 2 0 0 9 0 1130.5945 P11388 P11388 288 296 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 3.853E-34 190.73 2 0.74659 0.86373 5.7678 2 Median 0.74659 0.86373 5.7678 2 0 Median NaN NaN NaN 0 0 Median 337240000 190470000 146770000 337240000 190470000 146770000 0 0 0 14125 1471 14509 37551;37552 58977;58978;58979;58980;58981;58982 58979 6 VIHLSLAPK IKHGSQKDVRDIFERVIHLSLAPKRMKFFF RDIFERVIHLSLAPKRMKFFFKRYLDYEKQ R V I P K R 1 0 0 0 0 0 0 0 1 1 2 1 0 0 1 1 0 0 0 1 0 0 9 0 976.60695 Q14690 Q14690 1821 1829 PDCD11 Protein RRP5 homolog yes yes 2;3 0.0051665 80.684 2 1 1.6047 1.3253 12.43 3 Median 1.3649 1.4613 15.668 2 0 Median 1.6608 1.3253 NaN 1 0 Median 93984000 43716000 50268000 89876000 41844000 48032000 4108000 1872200 2235800 14126 1741 14510 37553;37554;37555 58983;58984;58985;58986;58987 58986 5 VIIIGSGVSGLAAAR IYKRIKPLPTKKTGKVIIIGSGVSGLAAAR VIIIGSGVSGLAAARQLQSFGMDVTLLEAR K V I A R Q 3 1 0 0 0 0 0 3 0 3 1 0 0 0 0 2 0 0 0 2 0 0 15 0 1382.8245 A8K2R3;O60341 A8K2R3 159 173 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.00019634 76.655 2 2 1.0625 1.0011 17.383 4 Median 0.83009 0.86028 3.927 2 0 Median 1.365 1.1577 3.0474 2 0 Median 50029000 27709000 22320000 41504000 23651000 17852000 8525500 4058300 4467200 14127 711 14511 37556;37557;37558;37559 58988;58989;58990;58991;58992 58991 3 VIILGDSGVGK ______________________________ VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ K V I G K T 0 0 0 1 0 0 0 3 0 2 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1056.6179 A0A158RFU6;P51149;C9J592;C9J8S3;B4DPH9;C9IZZ0;C9J4V0;C9J4S4;C9J7D1 A0A158RFU6 11 21 RAB7A Ras-related protein Rab-7a yes no 2 0.019604 44.203 1 1.0324 0.81602 NaN 1 Median NaN NaN NaN 0 0 Median 1.0324 0.81602 NaN 1 0 Median 3049300 1786800 1262500 0 0 0 3049300 1786800 1262500 14128 628 14512 37560 58993;58994 58993 2 VIILSLDR EMRAPKHFLPEMLSKVIILSLDRSDEDKEK LPEMLSKVIILSLDRSDEDKEKASSLISLL K V I D R S 0 1 0 1 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 8 0 927.57532 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89;E9PKF8 D3DQV9 585 592 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0052682 85.212 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3248300 0 3248300 3248300 0 3248300 0 0 0 14129 1054 14513 37561;37562;37563 58995;58996;58997 58997 3 VIISAPSADAPMFVMGVNHEK TMEKAGAHLQGGAKRVIISAPSADAPMFVM SADAPMFVMGVNHEKYDNSLKIISNASCTT R V I E K Y 3 0 1 1 0 0 1 1 1 2 0 1 2 1 2 2 0 0 0 3 0 0 21 0 2212.102 V9HVZ4;P04406;Q0QET7;E7EUT5;A4UCT1;B4DRV9 V9HVZ4 119 139 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3 2.3349E-07 58.49 2 3.9704 4.4719 2.039 2 Median 3.9704 4.4719 2.039 2 0 Median NaN NaN NaN 0 0 Median 212630000 44861000 167770000 212630000 44861000 167770000 0 0 0 14130 1442 14514 37564;37565 58998;58999;59000 58998 1145;1146 3 VIITNFPAAK NDTAPRAMAVLESLRVIITNFPAAKSLDIQ LESLRVIITNFPAAKSLDIQVPNFPADETK R V I A K S 2 0 1 0 0 0 0 0 0 2 0 1 0 1 1 0 1 0 0 1 0 0 10 0 1072.6281 Q53HS0;P47897;A8K3A8;Q96AW5;B4DNN3;A0A1B0GVU9;H7C0R3;Q9H3A5;Q9BUZ3;B4DDN1 Q53HS0 577 586 QARS Glutamine--tRNA ligase yes no 2 0.00029185 91.064 2 1 1.4243 1.4248 52.211 3 Plateau 1.4135 1.4114 16.334 2 0 Median 0.7044 0.58428 NaN 1 0 Median 54389000 22905000 31483000 52598000 21867000 30730000 1790800 1038100 752710 14131 1575 14515 37566;37567;37568 59001;59002;59003 59002 3 VILESEVIAEAVGVK EYVYERMTGLRWKCKVILESEVIAEAVGVK VILESEVIAEAVGVKKTVKYEAAGEAVKTL K V I V K K 2 0 0 0 0 0 3 1 0 2 1 1 0 0 0 1 0 0 0 4 0 0 15 0 1554.8869 Q6NUN2;A3F769;O15226;A3F768;A2I829 Q6NUN2 482 496 NKRF;NRF NF-kappa-B-repressing factor yes no 2 2.1251E-07 108.35 1 0.77384 0.78959 NaN 1 Median 0.77384 0.78959 NaN 1 0 Median NaN NaN NaN 0 0 Median 17168000 10075000 7092700 17168000 10075000 7092700 0 0 0 14132 655 14516 37569 59004;59005 59005 2 VILGAHNEK AAHCLDNILALSFYKVILGAHNEKVREQSV ALSFYKVILGAHNEKVREQSVQEIPVSRLF K V I E K V 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 979.54508 CON__P06868 CON__P06868 637 645 yes yes 3 0.02962 29.437 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21309000 21309000 0 21309000 21309000 0 0 0 0 + 14133 1157 14517 37570 59006 59006 1 VINEEYK ______________________________ FEDTVEERVINEEYKIWKKNTPFLYDLVMT R V I Y K I 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 0 893.44945 Q09028;E9PNS2;E9PIC4;E9PNS6;C9JAJ9;Q6FHQ0;Q16576;E9PC52;A8K6A2 Q6FHQ0 15 21 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.011486 108.24 1 0.87582 0.99272 NaN 1 Median 0.87582 0.99272 NaN 1 0 Median NaN NaN NaN 0 0 Median 97197000 49815000 47383000 97197000 49815000 47383000 0 0 0 14134 1771;1695 14518 37571 59007;59008 59008 2 VINEPTAAALAYGLDK ATKDAGQISGLNVLRVINEPTAAALAYGLD INEPTAAALAYGLDKSEDKVIAVYDLGGGT R V I D K S 4 0 1 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 1 1 0 0 16 0 1644.8723 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;Q2F839 B7Z4V2 205 220 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 8.3651E-13 123.64 1 2 1.382 1.1101 46.774 3 Median 2.1106 2.3761 NaN 1 0 Median 1.3348 1.0609 6.4137 2 0 Median 154220000 50254000 103960000 121390000 36144000 85243000 32829000 14110000 18719000 14135 1092 14519 37572;37573;37574 59009;59010;59011;59012;59013;59014;59015 59010 7 VINIDGQK ARFINHSCEPNCYSRVINIDGQKHIVIFAM EPNCYSRVINIDGQKHIVIFAMRKIYRGEE R V I Q K H 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 0 0 0 0 1 0 0 8 0 885.49198 Q03164;B4DIJ7 Q03164 3917 3924 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180;Histone-lysine N-methyltransferase yes no 2 0.029933 52.268 1 0.7674 0.77389 NaN 1 Median 0.7674 0.77389 NaN 1 0 Median NaN NaN NaN 0 0 Median 28146000 14569000 13577000 28146000 14569000 13577000 0 0 0 14136 1680 14520 37575 59016 59016 1 VINLNDNTFTEK ITAPAQAFAVNPLLRVINLNDNTFTEKGAV LLRVINLNDNTFTEKGAVAMAETLKTLRQV R V I E K G 0 0 3 1 0 0 1 0 0 1 1 1 0 1 0 0 2 0 0 1 0 0 12 0 1406.7042 B4DY16;A0A024R1U0;P46060;B4E0U0;H0Y4Q3 B4DY16 185 196 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.025576 48.284 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14137 90 14521 37576 59017 59017 1 VINTGIK KELRNVLLNNSEKMKVINTGIKVWCRNNSG LNNSEKMKVINTGIKVWCRNNSGEEFDCAF K V I I K V 0 0 1 0 0 0 0 1 0 2 0 1 0 0 0 0 1 0 0 1 0 0 7 0 743.45414 Q08J23 Q08J23 580 586 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.026873 81.381 1 1.5925 1.6047 NaN 1 Median 1.5925 1.6047 NaN 1 0 Median NaN NaN NaN 0 0 Median 27023000 10779000 16244000 27023000 10779000 16244000 0 0 0 14138 1694 14522 37577 59018 59018 1 VINTPEVLR QLMRVYGALMWSLGKVINTPEVLRVYIGSF MWSLGKVINTPEVLRVYIGSFWAQPLQNTD K V I L R V 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 1 0 0 2 0 0 9 0 1039.6026 A8K9B9;A0A024R9N6;Q9H223 A8K9B9 246 254 EHD4 EH domain-containing protein 4 yes no 2 0.019957 58.917 2 0.77539 0.76792 NaN 1 Median 0.77539 0.76792 NaN 1 0 Median NaN NaN NaN 0 0 Median 16887000 7713100 9174000 16887000 7713100 9174000 0 0 0 14139 284 14523 37578;37579 59019;59020;59021 59021 3 VIPDFVCQGGDITK TGEKGFGFKNSIFHRVIPDFVCQGGDITKH RVIPDFVCQGGDITKHDGTGGQSIYGDKFE R V I T K H 0 0 0 2 1 1 0 2 0 2 0 1 0 1 1 0 1 0 0 2 0 0 14 0 1547.7654 P49792;Q5JC46;Q5JC45 P49792 3116 3129 RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 0.0097064 51.841 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14140 1588 14524 37580 59022 59022 1 VIPEDASESEEK EPKISNDNPEEHVLKVIPEDASESEEKLDQ VLKVIPEDASESEEKLDQKEDGSKYETIHL K V I E K L 1 0 0 1 0 0 4 0 0 1 0 1 0 0 1 2 0 0 0 1 0 0 12 0 1331.6093 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 915 926 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00015552 92.538 2 2 1.1381 1.0683 37.949 4 Median 0.69578 0.76649 6.4404 2 0 Median 1.8238 1.4717 4.7891 2 0 Median 129490000 72242000 57250000 116570000 67545000 49023000 12925000 4697100 8227500 14141 878 14525 37581;37582;37583;37584 59023;59024;59025;59026;59027;59028 59025 6 VIPEDGPAAQNPENVK RSSFDEMLPGTHFQRVIPEDGPAAQNPENV IPEDGPAAQNPENVKRLLFCTGKVYYDLTR R V I V K R 2 0 2 1 0 1 2 1 0 1 0 1 0 0 3 0 0 0 0 2 0 0 16 0 1676.837 B4DF00;E9PDF2;E9PCR7;Q02218;B4DZ95;B4E3E9;B4DH65;E9PFG7;B4DK55;A0A0D9SFS3 B4DF00 835 850 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 5.3665E-05 83.314 1 1.4384 1.4697 NaN 1 Median 1.4384 1.4697 NaN 1 0 Median NaN NaN NaN 0 0 Median 17307000 8686100 8620600 17307000 8686100 8620600 0 0 0 14142 968 14526 37585 59029 59029 1 VIPLDRDNK ECRMIGLRLYDGLFKVIPLDRDNKELKAFN YDGLFKVIPLDRDNKELKAFNIRLEELHVI K V I N K E 0 1 1 2 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 9 1 1068.5928 Q16531;F5GY55;B7Z2A1;F5H2L3;F5GWI0 Q16531 142 150 DDB1 DNA damage-binding protein 1 yes no 2;3 0.00039441 93.429 3 1 0.69112 0.81823 22.241 4 Median 0.66289 0.77696 19.876 3 0 Median 1.1821 0.99279 NaN 1 0 Median 160670000 94389000 66281000 153810000 91177000 62638000 6855600 3212100 3643500 14143 1770 14527 37586;37587;37588;37589 59030;59031;59032;59033 59032 4 VIQAGMFDQK KILAAAKYKLNVDQKVIQAGMFDQKSSSHE NVDQKVIQAGMFDQKSSSHERRAFLQAILE K V I Q K S 1 0 0 1 0 2 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 0 10 0 1135.5696 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;B4E0F1;B4DSI8;B3KNW7;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 A7E2E1 1228 1237 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.00011512 92.838 3 0.79034 0.85007 8.9967 2 Median 0.79034 0.85007 8.9967 2 0 Median NaN NaN NaN 0 0 Median 86309000 39958000 46351000 86309000 39958000 46351000 0 0 0 14144 695;1595 14528 37590;37591;37592 59034;59035;59036;59037 59036 541 4 VIQCFAETGQVQK TLALSVYLRANVPNKVIQCFAETGQVQKIV NKVIQCFAETGQVQKIVLYAKKVGYTPDWI K V I Q K I 1 0 0 0 1 3 1 1 0 1 0 1 0 1 0 0 1 0 0 2 0 0 13 0 1506.7501 A0A087WVQ6;Q00610 A0A087WVQ6 492 504 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.00020949 90.827 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14145 419 14529 37593 59038 59038 1 VIQCYIQYGNEEQR QGKIKTIAFAHDSTRVIQCYIQYGNEEQRK RVIQCYIQYGNEEQRKQAFEELRDDLVELS R V I Q R K 0 1 1 0 1 3 2 1 0 2 0 0 0 0 0 0 0 0 2 1 0 0 14 0 1798.8308 Q15397;B2RDG4 Q15397 182 195 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.0027897 64.439 1 1 1.4022 1.1924 NaN 1 Median NaN NaN NaN 0 0 Median 1.4022 1.1924 NaN 1 0 Median 7012200 5209400 1802800 3875500 3875500 0 3136700 1333900 1802800 14146 1761 14530 37594;37595 59039;59040;59041;59042 59039 4 VIQCYIQYGNEEQRK QGKIKTIAFAHDSTRVIQCYIQYGNEEQRK VIQCYIQYGNEEQRKQAFEELRDDLVELSK R V I R K Q 0 1 1 0 1 3 2 1 0 2 0 1 0 0 0 0 0 0 2 1 0 0 15 1 1926.9258 Q15397;B2RDG4 Q15397 182 196 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 3 0.00037626 65.805 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2006300 2006300 0 0 0 0 2006300 2006300 0 14147 1761 14531 37596 59043 59043 1 VIQEGLEGLVLK KRVTKALDLADMITRVIQEGLEGLVLKDVK ITRVIQEGLEGLVLKDVKGTYEPGKRHWLK R V I L K D 0 0 0 0 0 1 2 2 0 1 3 1 0 0 0 0 0 0 0 2 0 0 12 0 1296.7653 P49916;B7Z6I3 P49916 649 660 LIG3 DNA ligase 3;DNA ligase yes no 2 2.6986E-06 111.46 2 2 0.60141 0.66376 14.831 4 Linear 0.59072 0.64986 3.1268 2 0 Median 0.62767 0.50376 1.2577 2 0 Median 108870000 68421000 40450000 96897000 60850000 36048000 11974000 7570800 4403000 14148 1589 14532 37597;37598;37599;37600 59044;59045;59046;59047;59048;59049;59050;59051 59044 8 VIQEIVDK VPRNLVGKVIGKNGKVIQEIVDKSGVVRVR VIGKNGKVIQEIVDKSGVVRVRVEGDNDKK K V I D K S 0 0 0 1 0 1 1 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 942.5386 P51116;A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 P51116 313 320 FXR2;FXR1 Fragile X mental retardation syndrome-related protein 2;Fragile X mental retardation syndrome-related protein 1 no no 2 0.0011205 111.95 2 1 1.2448 1.2761 19.79 3 Median 1.2062 1.3499 7.9504 2 0 Median 1.2448 0.9718 NaN 1 0 Median 156950000 69146000 87807000 153680000 67715000 85968000 3270300 1431600 1838700 14149 1593;531 14533 37601;37602;37603 59052;59053;59054;59055;59056;59057 59052 6 VIQENEHALQK PEIQKEHRNLLQELKVIQENEHALQKDALS QELKVIQENEHALQKDALSIKLKLEQIDGH K V I Q K D 1 0 1 0 0 2 2 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1307.6834 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 999 1009 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 1.1819E-40 189.58 5 4 1.2586 1.2373 21.776 8 Median 0.85984 0.98855 6.5383 4 0 Median 1.7492 1.4758 1.5324 4 0 Median 1033500000 514640000 518890000 837630000 443930000 393710000 195890000 70712000 125180000 14150 2070 14534 37604;37605;37606;37607;37608;37609;37610;37611;37612 59058;59059;59060;59061;59062;59063;59064;59065;59066;59067;59068;59069;59070;59071;59072;59073 59063 16 VIQIATSSSTAK RALTQFPLPKNLLAKVIQIATSSSTAKNLM LAKVIQIATSSSTAKNLMQFHTVGTKTKLS K V I A K N 2 0 0 0 0 1 0 0 0 2 0 1 0 0 0 3 2 0 0 1 0 0 12 0 1204.6663 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 224 235 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 6.5475E-05 97.813 2 2 1.337 1.2852 9.6742 4 Median 1.1773 1.2852 7.4087 2 0 Median 1.5991 1.2579 14.875 2 0 Median 86143000 42614000 43530000 79534000 40128000 39406000 6609400 2485800 4123500 14151 122 14535 37613;37614;37615;37616 59074;59075;59076;59077;59078;59079 59076 6 VIQLLFK TAEQENEPTVGVIPRVIQLLFKEIDKKSDF PTVGVIPRVIQLLFKEIDKKSDFEFTLKVS R V I F K E 0 0 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 859.55312 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 121 127 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.026743 82.263 3 1 0.87266 0.98259 12.189 3 Median 0.86906 0.98213 0.065778 2 0 Median 1.5578 1.213 NaN 1 0 Median 180800000 94783000 86016000 165180000 88167000 77010000 15621000 6615800 9005300 14152 1803 14536 37617;37618;37619;37620 59080;59081;59082;59083;59084;59085 59080 6 VIQVDEMIVEEEEEEENERK AEAIQTPLKSAKTRKVIQVDEMIVEEEEEE EMIVEEEEEEENERKNLQTARVKRCPPSKK K V I R K N 0 1 1 1 0 1 9 0 0 2 0 1 1 0 0 0 0 0 0 3 0 0 20 1 2475.1323 Q53HL2;A8K7A2;B4DXT3 Q53HL2 116 135 CDCA8 Borealin yes no 3 3.3025E-18 120.4 5 6 1.1761 1.4186 29.992 11 Median 1.1761 1.4186 33.392 5 0 Median 1.3346 1.1354 29.754 6 0 Median 627850000 286830000 341010000 507140000 232920000 274220000 120710000 53917000 66791000 14153 1789 14537;14538 37621;37622;37623;37624;37625;37626;37627;37628;37629;37630;37631 59086;59087;59088;59089;59090;59091;59092;59093;59094;59095;59096;59097;59098;59099;59100;59101;59102;59103;59104;59105 59089 1655 19 VIQYLAYVASSHK CTGESGAGKTENTKKVIQYLAYVASSHKSK KKVIQYLAYVASSHKSKKDQGELERQLLQA K V I H K S 2 0 0 0 0 1 0 0 1 1 1 1 0 0 0 2 0 0 2 2 0 0 13 0 1477.7929 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;Q9UMJ0 A0A024R1N1 187 199 MYH9 Myosin-9 yes no 3 0.0069069 46.408 2 2 3.0501 2.4461 3.4469 2 Median NaN NaN NaN 0 0 Median 3.0501 2.4461 3.4469 2 0 Median 76861000 68260000 8600500 65427000 65427000 0 11434000 2833600 8600500 14154 81 14539 37632;37633;37634;37635 59106;59107;59108;59109 59106 4 VISALSEQANQR KEGVSINKSLLTLGKVISALSEQANQRSVF LGKVISALSEQANQRSVFIPYRESVLTWLL K V I Q R S 2 1 1 0 0 2 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 12 0 1314.6892 Q15058 Q15058 636 647 KIF14 Kinesin-like protein KIF14 yes yes 2 2.322E-08 111.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4436500 0 4436500 4436500 0 4436500 0 0 0 14155 1751 14540 37636 59110 59110 1 VISDSESDIGGSDVEFKPDTK TQGSRRSSRQIKKRRVISDSESDIGGSDVE SDIGGSDVEFKPDTKEEGSSDEISSGVGDS R V I T K E 0 0 0 4 0 0 2 2 0 2 0 2 0 1 1 4 1 0 0 2 0 0 21 1 2224.0383 P52701;A0A087WWJ1;Q1L838 P52701 250 270 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 3 0.00055368 40.381 2 1.7978 2.1238 NaN 1 Median 1.7978 2.1238 NaN 1 0 Median NaN NaN NaN 0 0 Median 23000000 8074900 14925000 23000000 8074900 14925000 0 0 0 14156 1601 14541 37637;37638 59111;59112 59111 2 VISELNGK LDSVGIEADDDRLNKVISELNGKNIEDVIA DDDRLNKVISELNGKNIEDVIAQGIGKLAS K V I G K N 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 858.48108 A0A024RCA7;P05387 A0A024RCA7 42 49 RPLP2 60S acidic ribosomal protein P2 yes no 2 0.0031812 97.602 1 0.77902 0.87073 NaN 1 Median 0.77902 0.87073 NaN 1 0 Median NaN NaN NaN 0 0 Median 99448000 57529000 41919000 99448000 57529000 41919000 0 0 0 14157 356 14542 37639 59113 59113 1 VISGVLQLGNIVFK RIMGIPEEEQMGLLRVISGVLQLGNIVFKK RVISGVLQLGNIVFKKERNTDQASMPDNTA R V I F K K 0 0 1 0 0 1 0 2 0 2 2 1 0 1 0 1 0 0 0 3 0 0 14 0 1485.8919 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 342 355 MYH9 Myosin-9 yes no 2 3.1937E-57 192.38 2 1.6714 1.9064 0.36457 2 Median 1.6714 1.9064 0.36457 2 0 Median NaN NaN NaN 0 0 Median 323000000 122070000 200930000 323000000 122070000 200930000 0 0 0 14158 81 14543 37640;37641 59114;59115;59116;59117;59118;59119 59118 6 VISGVLQLGNIVFKK RIMGIPEEEQMGLLRVISGVLQLGNIVFKK VISGVLQLGNIVFKKERNTDQASMPDNTAA R V I K K E 0 0 1 0 0 1 0 2 0 2 2 2 0 1 0 1 0 0 0 3 0 0 15 1 1613.9869 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 342 356 MYH9 Myosin-9 yes no 2;3 5.5086E-05 57.328 4 3 2.4999 2.4552 18.043 6 Median 1.9973 2.2829 4.0094 3 0 Median 3.3819 2.8916 15.006 3 0 Median 74030000 20163000 53867000 44250000 13938000 30313000 29779000 6225100 23554000 14159 81 14544 37642;37643;37644;37645;37646;37647;37648 59120;59121;59122;59123;59124;59125;59126;59127;59128;59129 59126 10 VISYEEGK PIMLVGNKKDLHMERVISYEEGKALAESWN KDLHMERVISYEEGKALAESWNAAFLESSA R V I G K A 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 8 0 923.46001 C9J931;Q6NZ61;A8K005;A0A090N900;Q15382 C9J931 23 30 RHEB GTP-binding protein Rheb yes no 2 0.011377 75.109 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14160 459 14545 37649 59130 59130 1 VITDIAGVIPAEK QSATRLTGGKEITEKVITDIAGVIPAEKID EKVITDIAGVIPAEKIDGVFAACQSGSFDK K V I E K I 2 0 0 1 0 0 1 1 0 3 0 1 0 0 1 0 1 0 0 2 0 0 13 0 1324.7602 P35249;H7C1P0 P35249 261 273 RFC4 Replication factor C subunit 4 yes no 2 0.00031489 64.918 2 1.1166 1.1476 10.372 2 Median 1.1166 1.1476 10.372 2 0 Median NaN NaN NaN 0 0 Median 61249000 30668000 30581000 61249000 30668000 30581000 0 0 0 14161 1541 14546 37650;37651 59131;59132 59132 1 VITEYLNAQESAK GLVMVEVRKEKQFQKVITEYLNAQESAKSA QKVITEYLNAQESAKSARLNLWRYGDFRAD K V I A K S 2 0 1 0 0 1 2 0 0 1 1 1 0 0 0 1 1 0 1 1 0 0 13 0 1464.746 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299 A0A140VK49 874 886 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.00609 55.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2178700 0 2178700 0 0 0 2178700 0 2178700 14162 618 14547 37652 59133 59133 1 VITFANQDDYISFR ILRYLFPVPKDDSHRVITFANQDDYISFRH RVITFANQDDYISFRHHVYKKTDHRNVELT R V I F R H 1 1 1 2 0 1 0 0 0 2 0 0 0 2 0 1 1 0 1 1 0 0 14 0 1687.8206 H0Y714;Q96G21;B8ZZ47;E7ENR5;B9A008 H0Y714 206 219 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 3.0632E-15 143.97 2 2 0.845 0.8263 19.505 4 Median 0.8789 0.9844 5.8613 2 0 Median 0.82629 0.70687 3.1784 2 0 Median 230320000 119810000 110520000 177080000 92261000 84819000 53243000 27545000 25698000 14163 1286 14548 37653;37654;37655;37656 59134;59135;59136;59137;59138;59139 59137 6 VITIMQNPR LTKRAGELTEDEVERVITIMQNPRQYKIPD EDEVERVITIMQNPRQYKIPDWFLNRQKDV R V I P R Q 0 1 1 0 0 1 0 0 0 2 0 0 1 0 1 0 1 0 0 1 0 0 9 0 1070.5906 P62269 P62269 67 75 RPS18 40S ribosomal protein S18 yes yes 2 9.1993E-08 120.62 1 2 0.94691 0.83757 NaN 1 Median NaN NaN NaN 0 0 Median 0.94691 0.83757 NaN 1 0 Median 93886000 1195800 92690000 89751000 0 89751000 4135000 1195800 2939300 14164 1639 14549;14550 37657;37658;37659 59140;59141;59142 59140 1419 3 VITMFVQR NSIPGIESPFEQAKKVITMFVQRQVFAENK PFEQAKKVITMFVQRQVFAENKDEIALVLF K V I Q R Q 0 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 2 0 0 8 0 992.54772 P13010;Q53TC2;C9JZ81;H7C0H9 P13010 37 44 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.0010255 114.72 1 2 0.72084 0.67069 4.7074 3 Plateau 0.58736 0.67071 NaN 1 0 Median 0.73189 0.61819 0.085072 2 0 Median 163710000 94506000 69200000 147860000 86490000 61368000 15849000 8016400 7832100 14165 1476 14551;14552 37660;37661;37662 59143;59144;59145;59146 59145 1223 4 VITYLDHSTQK YLNHVSKRLEEEGDRVITYLDHSTQKPLIA EGDRVITYLDHSTQKPLIACVEKQLLGEHL R V I Q K P 0 0 0 1 0 1 0 0 1 1 1 1 0 0 0 1 2 0 1 1 0 0 11 0 1303.6772 Q13619;A0A0A0MR50;B2RBV7 Q13619 274 284 CUL4A Cullin-4A yes no 2 6.1182E-10 128.35 1 0.88737 0.95631 NaN 1 Median 0.88737 0.95631 NaN 1 0 Median NaN NaN NaN 0 0 Median 21710000 11718000 9992100 21710000 11718000 9992100 0 0 0 14166 1718 14553 37663 59147 59147 1 VIVAVGDR LHPIQTSFQEATASKVIVAVGDRSSNLRGE QEATASKVIVAVGDRSSNLRGECTPTQREV K V I D R S 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 3 0 0 8 0 827.4865 Q8TEM1 Q8TEM1 1577 1584 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.032325 50.703 1 0.62725 0.6348 NaN 1 Median 0.62725 0.6348 NaN 1 0 Median NaN NaN NaN 0 0 Median 20001000 12208000 7793500 20001000 12208000 7793500 0 0 0 14167 1937 14554 37664 59148 59148 1 VIVDANNLTVEIENELNIIHK ASEVMGPVEAAPEYRVIVDANNLTVEIENE NLTVEIENELNIIHKFIRDKYSKRFPELES R V I H K F 1 0 4 1 0 0 3 0 1 4 2 1 0 0 0 0 1 0 0 3 0 0 21 0 2389.2853 B4DWW8;E7EVX8;Q8WWY3;E7EU94;E7ESX0;E7EN72 B4DWW8 92 112 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 3 1.8681E-08 71.742 2 1.0276 1.0367 NaN 1 Median 1.0276 1.0367 NaN 1 0 Median NaN NaN NaN 0 0 Median 7866100 3801100 4065000 7866100 3801100 4065000 0 0 0 14168 1046 14555 37665;37666 59149;59150;59151;59152 59150 4 VIVDFAGSSK EHLELLKHMHTVGEKVIVDFAGSSKLRFRL TVGEKVIVDFAGSSKLRFRLGYHAIPSM__ K V I S K L 1 0 0 1 0 0 0 1 0 1 0 1 0 1 0 2 0 0 0 2 0 0 10 0 1021.5444 F8W6G5;C9JZ40;F5HRF8;A0A0A0MRW7;Q7Z2E3 F8W6G5 176 185 APTX Aprataxin yes no 2 0.023512 52.725 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14169 472 14556 37667 59153 59153 1 VIVDFSSPNIAK LVNGVQLPALGENKKVIVDFSSPNIAKEMH NKKVIVDFSSPNIAKEMHVGHLRSTIIGES K V I A K E 1 0 1 1 0 0 0 0 0 2 0 1 0 1 1 2 0 0 0 2 0 0 12 0 1288.7027 P54136 P54136 194 205 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0022413 68.893 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17110000 0 17110000 17110000 0 17110000 0 0 0 14170 1609 14557 37668;37669 59154;59155 59154 2 VIVMSATLDAGK MGVLKEVVRQRSDLKVIVMSATLDAGKFQI DLKVIVMSATLDAGKFQIYFDNCPLLTIPG K V I G K F 2 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 0 0 2 0 0 12 0 1203.6533 O43143;B4E0S6 O43143 288 299 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.00035011 76.228 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14171 1379 14558 37670;37671 59156;59157 59157 1051 2 VIVSDVQESFIWVR HIANYISGIQTIGHRVIVSDVQESFIWVRY RVIVSDVQESFIWVRYKRNENQLIIFADDT R V I V R Y 0 1 0 1 0 1 1 0 0 2 0 0 0 1 0 2 0 1 0 4 0 0 14 0 1675.8934 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 1000 1013 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.019165 45.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1575400 0 1575400 1575400 0 1575400 0 0 0 14172 764 14559 37672 59158 59158 1 VIVVGDLSVGK LRFPITNSAGFKISKVIVVGDLSVGKTCLI KISKVIVVGDLSVGKTCLINRFCKDTFDKN K V I G K T 0 0 0 1 0 0 0 2 0 1 1 1 0 0 0 1 0 0 0 4 0 0 11 0 1084.6492 C9JY26;Q6NXT3;A0A024QZ68;Q9BZG1;C9JBG0;Q96PJ7;E7ES60;B4DNC0;K7EIF2;H7C0Y7 C9JY26 55 65 RAB34 Ras-related protein Rab-34 yes no 2 0.00076687 72.643 2 2.4405 2.5447 10.807 2 Median 2.4405 2.5447 10.807 2 0 Median NaN NaN NaN 0 0 Median 36567000 9348300 27219000 36567000 9348300 27219000 0 0 0 14173 13 14560 37673;37674 59159;59160;59161 59160 3 VIYVLPMLTIK EILGASLSAPLTSYKVIYVLPMLTIKEDKG TSYKVIYVLPMLTIKEDKGTGVVTSVPSDS K V I I K E 0 0 0 0 0 0 0 0 0 2 2 1 1 0 1 0 1 0 1 2 0 0 11 0 1288.7829 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3 B4E266 325 335 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.0003776 72.547 2 2.4834 2.5106 29.451 2 Median 2.4834 2.5106 29.451 2 0 Median NaN NaN NaN 0 0 Median 17905000 5454100 12451000 17905000 5454100 12451000 0 0 0 14174 883 14561 37675;37676 59162;59163;59164;59165;59166 59165 697 5 VKLEAEIATYR GQRQAQEYEALLNIKVKLEAEIATYRRLLE LNIKVKLEAEIATYRRLLEDGEDFK_____ K V K Y R R 2 1 0 0 0 0 2 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1291.7136 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 371 381 KRT18 Keratin, type I cytoskeletal 18 no no 3 0.036184 22.329 1 1.2901 1.0588 NaN 1 Median NaN NaN NaN 0 0 Median 1.2901 1.0588 NaN 1 0 Median 4568300 1779400 2788900 0 0 0 4568300 1779400 2788900 + 14175 316;1155 14562 37677 59167 59167 1 VKPAPDETSFSEALLK ______________________________ KPAPDETSFSEALLKRNQDLAPNSAEQASI R V K L K R 2 0 0 1 0 0 2 0 0 0 2 2 0 1 2 2 1 0 0 1 0 0 16 1 1730.9091 B4DY09;Q53FG3;F4ZW62;Q12905;X6R6Z1;A0A0A0MRL0 B4DY09 6 21 ILF2 Interleukin enhancer-binding factor 2 yes no 3 0.00050349 62.237 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14176 1049 14563 37678 59168 59168 1 VKPDVVQDK IKQRDKRLEWEMMCRVKPDVVQDKETERNL WEMMCRVKPDVVQDKETERNLQRIATRGVV R V K D K E 0 0 0 2 0 1 0 0 0 0 0 2 0 0 1 0 0 0 0 3 0 0 9 1 1026.571 Q9Y3B9;A8K201 Q9Y3B9 148 156 RRP15 RRP15-like protein yes no 2 0.0001362 113.71 2 0.83143 0.97238 8.9025 2 Median 0.83143 0.97238 8.9025 2 0 Median NaN NaN NaN 0 0 Median 135890000 71807000 64087000 135890000 71807000 64087000 0 0 0 14177 2134 14564 37679;37680 59169;59170;59171 59169 3 VKPLLQVSR YLKLRNWQWWRLFTKVKPLLQVSRQEEEMM WRLFTKVKPLLQVSRQEEEMMAKEEELVKV K V K S R Q 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 1 0 0 0 2 0 0 9 1 1038.655 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 834 842 MYH9 Myosin-9 yes no 3 0.0008314 80.688 1 1.4677 1.7348 NaN 1 Median 1.4677 1.7348 NaN 1 0 Median NaN NaN NaN 0 0 Median 160260000 59489000 100770000 160260000 59489000 100770000 0 0 0 14178 81 14565 37681 59172;59173 59173 2 VKPTELCAGHLIGGTDSCQGDSGGPLVCFEK IENKVCNRNEYLDGRVKPTELCAGHLIGGT SCQGDSGGPLVCFEKDKYILQGVTSWGLGC R V K E K D 1 0 0 2 3 1 2 6 1 1 3 2 0 1 2 2 2 0 0 2 0 0 31 1 3288.5213 CON__P06868 CON__P06868 741 771 yes yes 4 1.6201E-12 66.454 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56097000 56097000 0 0 0 0 56097000 56097000 0 + 14179 1157 14566 37682;37683 59174;59175;59176 59174 3 VKPYLPMIIAPLFR FKFLGAVAMDLGIDKVKPYLPMIIAPLFRE KVKPYLPMIIAPLFRELNSTYSEQDPLLKN K V K F R E 1 1 0 0 0 0 0 0 0 2 2 1 1 1 3 0 0 0 1 1 0 0 14 1 1656.9789 O75691;B4DN27 O75691 2663 2676 UTP20 Small subunit processome component 20 homolog yes no 3 0.00027522 56.122 2 1.9415 2.1231 2.9673 2 Median 1.9415 2.1231 2.9673 2 0 Median NaN NaN NaN 0 0 Median 22063000 5538400 16525000 22063000 5538400 16525000 0 0 0 14180 1412 14567 37684;37685 59177;59178;59179 59179 1106 3 VKVEEEEEEK EDEITEKKAKKAKIKVKVEEEEEEKVAEEE KAKIKVKVEEEEEEKVAEEEETSVKKKKKR K V K E K V 0 0 0 0 0 0 6 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 10 1 1246.5929 Q9Y2X3;B3KN82 Q9Y2X3 466 475 NOP58 Nucleolar protein 58 yes no 2 3.0399E-31 188.28 1 0.80117 0.94575 NaN 1 Median 0.80117 0.94575 NaN 1 0 Median NaN NaN NaN 0 0 Median 64141000 35063000 29078000 64141000 35063000 29078000 0 0 0 14181 2129 14568 37686 59180 59180 1 VLAATDLDAEEEVVAGEFGSR LAFSTKEEQQQLLQKVLAATDLDAEEEVVA LDAEEEVVAGEFGSRSSQASRRFGTMSSMS K V L S R S 4 1 0 2 0 0 4 2 0 0 2 0 0 1 0 1 1 0 0 3 0 0 21 0 2177.0488 G3V1S1;B3KTH1;B3KRG2;A8K359;P19447;Q53HW5 G3V1S1 652 672 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 2 0.0019898 52.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14182 717 14569 37687 59181 59181 1 VLADPSDDTK DVAYRRGYFDEEMNRVLADPSDDTKGFFDP EEMNRVLADPSDDTKGFFDPNTHENLTYLQ R V L T K G 1 0 0 3 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1059.5084 A0A075B730;A0A087X1U6;P58107;Q15149;D3DWL0 Q15149 2979 2988 EPPK1;PLEC;PLEC1 Epiplakin;Plectin no no 2 2.8741E-08 120.12 2 1 2.1164 2.0004 9.8972 2 Median 1.9017 2.1454 NaN 1 0 Median 2.3553 1.8652 NaN 1 0 Median 137490000 48647000 88840000 132540000 47254000 85291000 4941200 1393000 3548300 14183 1754;397;1622 14570 37688;37689;37690 59182;59183;59184;59185;59186 59183 5 VLAEDEELYGDFEDLETGDVHK CFVTGKWEDDKDAAKVLAEDEELYGDFEDL LYGDFEDLETGDVHKGKSGPNTQNEDIEKE K V L H K G 1 0 0 4 0 0 5 2 1 0 3 1 0 1 0 0 1 0 1 2 0 0 22 0 2522.1337 Q14692 Q14692 772 793 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 5.6892E-30 135.21 2 2 1.1431 1.0962 5.6034 4 Median 0.96583 1.0845 3.5443 2 0 Median 1.3773 1.1398 7.5426 2 0 Median 279520000 137060000 142450000 200590000 106260000 94332000 78921000 30798000 48123000 14184 1742 14571 37691;37692;37693;37694 59187;59188;59189;59190;59191;59192 59191 6 VLAFLSSVAGDALTR PYLVPKLTTPPVNTRVLAFLSSVAGDALTR VLAFLSSVAGDALTRHLGVILPAVMLALKE R V L T R H 3 1 0 1 0 0 0 1 0 0 3 0 0 1 0 2 1 0 0 2 0 0 15 0 1518.8406 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2093 2107 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 2.6983E-07 107.18 3 1 1.0611 0.93778 12.963 3 Median 0.97939 0.98069 17.965 2 0 Median 1.0611 0.93778 NaN 1 0 Median 27832000 14242000 13591000 24121000 12421000 11701000 3710800 1821000 1889800 14185 1205 14572 37695;37696;37697;37698 59193;59194;59195;59196;59197 59196 5 VLAFLVLSR KRMVIVWSTGEESLRVLAFLVLSRVCRHKK GEESLRVLAFLVLSRVCRHKKDTFLGPVLK R V L S R V 1 1 0 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 2 0 0 9 0 1016.6383 Q9Y3T9;B3KNC3;Q9H9J5 Q9Y3T9 311 319 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.0018407 80.165 2 2 1.0341 0.96065 14.656 4 Median 1.0341 1.0603 3.6596 2 0 Median 0.97528 0.83845 8.9486 2 0 Median 65104000 31635000 33469000 57630000 27893000 29737000 7474400 3742700 3731800 14186 2139 14573 37699;37700;37701;37702 59198;59199;59200;59201;59202;59203;59204 59201 7 VLAGETLSVNDPPDVLDR TIHLTSPVVREEMEKVLAGETLSVNDPPDV GETLSVNDPPDVLDRQKCLAALASLRHAKW K V L D R Q 1 1 1 3 0 0 1 1 0 0 3 0 0 0 2 1 1 0 0 3 0 0 18 0 1908.9793 F4ZW64;F4ZW65;A0A024R7C7;F4ZW66;Q12906;A8K590;Q59GP7;K7EKJ9;K7EQR9 F4ZW64 183 200 ILF3 Interleukin enhancer-binding factor 3 yes no 2 1.2512E-31 139.46 2 2 1.468 0.8777 29.374 3 Plateau 1.4681 1.4573 NaN 1 0 Median 1.0382 0.87618 0.24614 2 0 Median 28360000 10535000 17824000 21716000 7431100 14285000 6644200 3104300 3539900 14187 220 14574 37703;37704;37705;37706 59205;59206;59207;59208 59205 4 VLAIGDEK LEIPDTLQELFARYRVLAIGDEKDQTRKED ELFARYRVLAIGDEKDQTRKEDELNSVDDI R V L E K D 1 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 843.47018 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1402 1409 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.020081 58.716 1 1.0302 1.0579 NaN 1 Median 1.0302 1.0579 NaN 1 0 Median NaN NaN NaN 0 0 Median 25373000 12359000 13014000 25373000 12359000 13014000 0 0 0 14188 1699 14575 37707 59209 59209 1 VLALELFEQITK LEQWIEKRRGEKLDKVLALELFEQITKGVD LDKVLALELFEQITKGVDYIHSKKLIHRDL K V L T K G 1 0 0 0 0 1 2 0 0 1 3 1 0 1 0 0 1 0 0 1 0 0 12 0 1402.8072 Q8IW76;B7ZKK7;P19525;Q05CP4 Q8IW76 389 400 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 8.6843E-06 108.67 2 1.4021 1.4191 1.0826 2 Median 1.4021 1.4191 1.0826 2 0 Median NaN NaN NaN 0 0 Median 24214000 10914000 13300000 24214000 10914000 13300000 0 0 0 14189 1111 14576 37708;37709 59210;59211;59212;59213 59210 4 VLALPEPSPAAPTLR GLGKGVARLSAEAEKVLALPEPSPAAPTLR VLALPEPSPAAPTLRSELELTLGKLEQVRS K V L L R S 3 1 0 0 0 0 1 0 0 0 3 0 0 0 4 1 1 0 0 1 0 0 15 0 1530.877 Q15149 Q15149 1187 1201 PLEC Plectin yes yes 2 4.395E-06 97.214 2 1.3992 1.4837 8.981 2 Median 1.3992 1.4837 8.981 2 0 Median NaN NaN NaN 0 0 Median 74418000 31151000 43267000 74418000 31151000 43267000 0 0 0 14190 1754 14577 37710;37711 59214;59215;59216;59217 59217 4 VLALPSHR EVEQVELPDGKKRRKVLALPSHRGPKIRLR DGKKRRKVLALPSHRGPKIRLRDKGKVKPV K V L H R G 1 1 0 0 0 0 0 0 1 0 2 0 0 0 1 1 0 0 0 1 0 0 8 0 891.52904 A0A024R753;Q9NW13 A0A024R753 670 677 RBM28 RNA-binding protein 28 yes no 2;3 0.028586 54.205 2 0.85911 0.97506 NaN 1 Median 0.85911 0.97506 NaN 1 0 Median NaN NaN NaN 0 0 Median 57015000 33144000 23872000 57015000 33144000 23872000 0 0 0 14191 214 14578 37712;37713 59218;59219 59218 2 VLALQAR ______________________________ ______________________________ K V L A R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 769.48102 Q96SB4;A8K8B2 Q96SB4 5 11 SRPK1 SRSF protein kinase 1 yes no 2 0.026837 80.377 2 1.9691 2.1018 14.175 2 Median 1.9691 2.1018 14.175 2 0 Median NaN NaN NaN 0 0 Median 77317000 24428000 52889000 77317000 24428000 52889000 0 0 0 14192 1988 14579 37714;37715 59220;59221 59220 2 VLALSVETDYTFPLAEK TVASVPHSIINGYKRVLALSVETDYTFPLA ALSVETDYTFPLAEKVKAFLADPSAFVAAA R V L E K V 2 0 0 1 0 0 2 0 0 0 3 1 0 1 1 1 2 0 1 2 0 0 17 0 1894.9928 Q53HW2;A8K4Z4;A0A024RBS2;P05388;Q6NSF2;F8VWS0;Q53HK9;F8VW21;F8VZS0;B4E3D5;F8W1K8;Q3MHV2 Q53HW2 248 264 RPLP0 60S acidic ribosomal protein P0 yes no 2 2.2638E-25 145.71 4 2 1.0051 1.161 24.033 5 Median 1.0446 1.1965 2.9494 3 0 Plateau 0.92321 0.76882 7.1258 2 0 Median 673520000 332160000 341360000 586010000 285770000 300240000 87507000 46396000 41111000 14193 345 14580 37716;37717;37718;37719;37720;37721 59222;59223;59224;59225;59226;59227;59228;59229;59230;59231;59232 59224 11 VLANNSLSFEK GSFKEALNVINTHTKVLANNSLSFEKAYCE THTKVLANNSLSFEKAYCEYRLNRIENALK K V L E K A 1 0 2 0 0 0 1 0 0 0 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1220.6401 V9HWK0;O76094;Q86X80;A0PJJ5;Q0D2M6;Q71V07;R4GNC1 V9HWK0 74 84 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 0.032634 37.556 1 1.5611 1.5844 NaN 1 Median 1.5611 1.5844 NaN 1 0 Median NaN NaN NaN 0 0 Median 10254000 2653100 7600600 10254000 2653100 7600600 0 0 0 14194 1416 14581 37722 59233 59233 1 VLANPGNSQVAR AAVENLPTFLVELSRVLANPGNSQVARVAA LSRVLANPGNSQVARVAAGLQIKNSLTSKD R V L A R V 2 1 2 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 12 0 1224.6575 B2RBR9;Q14974;J3QR48 B2RBR9 43 54 KPNB1 Importin subunit beta-1 yes no 2 2.084E-05 103.01 2 0.91699 1.0039 NaN 1 Median 0.91699 1.0039 NaN 1 0 Median NaN NaN NaN 0 0 Median 42458000 17902000 24556000 42458000 17902000 24556000 0 0 0 14195 880 14582 37723;37724 59234;59235;59236 59236 3 VLAPILPDNFSTPTGSR PRDSPAFPDSPWRERVLAPILPDNFSTPTG APILPDNFSTPTGSRTDSQSVRHSPIAPSS R V L S R T 1 1 1 1 0 0 0 1 0 1 2 0 0 1 3 2 2 0 0 1 0 0 17 0 1783.9468 Q9NQS7;B3KPD3 Q9NQS7 281 297 INCENP Inner centromere protein yes no 2 7.3525E-18 127.17 2 2 1.4137 1.4197 17.712 4 Median 1.0514 1.23 0.057929 2 0 Median 1.9183 1.6696 2.7025 2 0 Median 1185600000 524430000 661140000 776630000 378180000 398450000 408940000 146240000 262690000 14196 2059 14583 37725;37726;37727;37728 59237;59238;59239;59240;59241;59242;59243;59244;59245;59246 59245 10 VLAQNSGFDLQETLVK LGVQAFADALLIIPKVLAQNSGFDLQETLV LAQNSGFDLQETLVKIQAEHSESGQLVGVD K V L V K I 1 0 1 1 0 2 1 1 0 0 3 1 0 1 0 1 1 0 0 2 0 0 16 0 1760.9309 Q59ET3;B2R9K8;A0A024RDL1;P40227;A1JUI8;B4DPJ8;B4DN39 Q59ET3 448 463 CCT6A T-complex protein 1 subunit zeta yes no 2 4.0359E-12 117.23 2 3.2008 3.267 2.4457 2 Median 3.2008 3.267 2.4457 2 0 Median NaN NaN NaN 0 0 Median 25586000 7019700 18566000 25586000 7019700 18566000 0 0 0 14197 389 14584 37729;37730 59247;59248;59249 59247 3 VLAQQGEYSEAIPILR EHQPDNIKALFRKGKVLAQQGEYSEAIPIL LAQQGEYSEAIPILRAALKLEPSNKTIHAE K V L L R A 2 1 0 0 0 2 2 1 0 2 2 0 0 0 1 1 0 0 1 1 0 0 16 0 1785.9625 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;A0A0A0MTJ1;U3KQI1 B2R8G6 259 274 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 2 3.3718E-06 89.403 1 1.1829 1.2181 NaN 1 Median 1.1829 1.2181 NaN 1 0 Median NaN NaN NaN 0 0 Median 24739000 11756000 12982000 24739000 11756000 12982000 0 0 0 14198 232 14585 37731 59250;59251 59250 2 VLASLIIR DTALDMRGRCSAGQKVLASLIIRLALAETF RCSAGQKVLASLIIRLALAETFCLNCGIIA K V L I R L 1 1 0 0 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 8 0 883.58549 Q92878;H7C0V2 Q92878 1207 1214 RAD50 DNA repair protein RAD50 yes no 2 0.012508 73.616 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14199 1953 14586 37732;37733 59252;59253 59253 2 VLATAFDTTLGGR AYQVSVCAFNRGKLKVLATAFDTTLGGRKF LKVLATAFDTTLGGRKFDEVLVNHFCEEFG K V L G R K 2 1 0 1 0 0 0 2 0 0 2 0 0 1 0 0 3 0 0 1 0 0 13 0 1320.7038 O14992;A0A087WTS8;A0A087WYC1;Q59GF8;V9HW33;B4DH02;P34932;B4DT47;B4DIZ3;B4DUS3;B4E354;Q7KYN0 O14992 222 234 HS24/p52;HSPA4;HEL-S-5a;HS24/P52 Heat shock 70 kDa protein 4 yes no 2 0.0017486 69.979 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14200 404 14587 37734 59254 59254 1 VLATQPGPGR GDEPLNFLDPKVAQRVLATQPGPGRGRKKD KVAQRVLATQPGPGRGRKKDHGFKVSADGR R V L G R G 1 1 0 0 0 1 0 2 0 0 1 0 0 0 2 0 1 0 0 1 0 0 10 0 994.55598 B3KMR5;Q5JTH9;B3KY97;B3KPQ2;A0A087X0G0 B3KMR5 1129 1138 RRP12 RRP12-like protein yes no 2 1.0131E-11 138.54 1 1 1.3067 1.4629 NaN 1 Median 1.3067 1.4629 NaN 1 0 Median NaN NaN NaN 0 0 Median 91778000 42368000 49410000 89355000 39945000 49410000 2422500 2422500 0 14201 907 14588 37735;37736 59255;59256 59255 2 VLATTFDPYLGGR AYQVSVCAFNKGKLKVLATTFDPYLGGRNF LKVLATTFDPYLGGRNFDEALVDYFCDEFK K V L G R N 1 1 0 1 0 0 0 2 0 0 2 0 0 1 1 0 2 0 1 1 0 0 13 0 1408.7351 B3KNM0;Q53ZP9;A0A140VKE7;B4DZR0;O95757;D6RJ96;E9PDE8;B4DXT2 B3KNM0 222 234 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.00036872 62.303 1 2.9645 2.999 NaN 1 Median 2.9645 2.999 NaN 1 0 Median NaN NaN NaN 0 0 Median 17904000 5434700 12469000 17904000 5434700 12469000 0 0 0 14202 624 14589 37737 59257 59257 1 VLATVTKPVGGDK YSAAKSKVEKKKKEKVLATVTKPVGGDKNG EKVLATVTKPVGGDKNGGTRVVKLRKMPRY K V L D K N 1 0 0 1 0 0 0 2 0 0 1 2 0 0 1 0 2 0 0 3 0 0 13 1 1283.7449 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16 Q8TBK5 88 100 RPL6 60S ribosomal protein L6 yes no 2 4.1847E-18 143.89 3 2 0.86049 0.85048 21.392 4 Median 0.87408 1.0259 2.4399 2 0 Median 0.83453 0.7091 1.6261 2 0 Median 80008000 38433000 41574000 52761000 23946000 28815000 27246000 14488000 12759000 14203 342 14590 37738;37739;37740;37741;37742 59258;59259;59260;59261;59262;59263;59264;59265;59266 59259 9 VLCLAVAVGHVK KVDEVKSTIKFQMKKVLCLAVAVGHVKMTD MKKVLCLAVAVGHVKMTDDELVYNIHLAVN K V L V K M 2 0 0 0 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 4 0 0 12 0 1264.7326 P62906;Q1JQ76;A0A024RCW3 P62906 162 173 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2;3 0.00019793 79.906 2 4 1.0375 0.86741 5.4987 6 Median 0.83006 0.93333 3.4963 2 0 Median 1.0628 0.85516 2.829 4 0 Median 238000000 133430000 104570000 191220000 111420000 79799000 46783000 22011000 24772000 14204 1651 14591 37743;37744;37745;37746;37747;37748 59267;59268;59269;59270;59271;59272;59273;59274;59275;59276 59275 10 VLCLSQSEGR PLLHHWLQAGDILHRVLCLSQSEGRVLLCR DILHRVLCLSQSEGRVLLCRKPALVSTVEG R V L G R V 0 1 0 0 1 1 1 1 0 0 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1147.5656 Q14690;B4DH82;B4DES7 Q14690 692 701 PDCD11 Protein RRP5 homolog yes no 2 0.0096567 54.416 2 1.5278 1.2638 1.1845 2 Median NaN NaN NaN 0 0 Median 1.5278 1.2638 1.1845 2 0 Median 19402000 7799800 11602000 0 0 0 19402000 7799800 11602000 14205 1741 14592 37749;37750 59277;59278;59279 59277 3 VLDAIIQEK EEAKSSLAMNRSRGKVLDAIIQEKKSGRIP NRSRGKVLDAIIQEKKSGRIPGIYGRLGDL K V L E K K 1 0 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1027.5914 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 599 607 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 4.4487E-06 133.23 2 2 1.209 1.1749 25.315 4 Median 0.82528 0.9389 4.4584 2 0 Median 1.7608 1.4512 2.6159 2 0 Median 385010000 200100000 184900000 313780000 173750000 140030000 71231000 26357000 44874000 14206 2070 14593 37751;37752;37753;37754 59280;59281;59282;59283;59284;59285;59286;59287;59288;59289;59290;59291 59283 12 VLDELTLAR NLRMSVEADINGLRRVLDELTLARADLEMQ INGLRRVLDELTLARADLEMQIESLKEELA R V L A R A 1 1 0 1 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 9 0 1028.5866 CON__P02533;P02533;A0A024R1X6;CON__Q6IFX2;CON__A2A4G1;A8MT21;C9JTG5;CON__Q04695;Q04695;F5GWP8;Q14666;K7EPJ9;B4DE59;K7EMS3;CON__P08779;P08779;B4DWU0;B4E2J5 CON__P02533 224 232 KRT14;KRT15;KRT17;KRT19;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16 no no 2 0.0032669 82.426 1 2 0.087133 0.072471 3.8818 2 Median NaN NaN NaN 0 0 Median 0.087133 0.072471 3.8818 2 0 Median 165090000 161510000 3577300 128390000 128390000 0 36695000 33118000 3577300 + 14207 1150;1159;1168;964 14594 37755;37756;37757 59292;59293;59294;59295 59293 4 VLDELTLTK ALRQSVEADINGLRRVLDELTLTKADLEMQ INGLRRVLDELTLTKADLEMQIESLTEELA R V L T K A 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 9 0 1030.591 CON__P13645;P13645 CON__P13645 258 266 KRT10 Keratin, type I cytoskeletal 10 yes no 2 9.8046E-06 114.89 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 637150000 637150000 0 524170000 524170000 0 112980000 112980000 0 + 14208 1161 14595 37758;37759;37760;37761 59296;59297;59298;59299;59300;59301;59302;59303 59297 8 VLDIIYQPQAIFR SLGKTLESQAVETEKVLDIIYQPQAIFRVR EKVLDIIYQPQAIFRVRAVTRCTSSLEGHS K V L F R V 1 1 0 1 0 2 0 0 0 3 1 0 0 1 1 0 0 0 1 1 0 0 13 0 1574.8821 B4E074;Q9NVX2;A0A0A0MRH0;B4E303;K7ERN7 B4E074 87 99 NLE1 Notchless protein homolog 1 yes no 2 5.782E-06 105.4 2 2 1.6145 1.4356 10.858 4 Median 1.5703 1.6023 9.4896 2 0 Median 1.6145 1.3629 1.3121 2 0 Median 40215000 16064000 24151000 28454000 11733000 16720000 11761000 4330600 7430600 14209 1060 14596 37762;37763;37764;37765 59304;59305;59306;59307;59308;59309;59310;59311 59310 8 VLDILEDYCMWR KEQGSRVLIFSQMTRVLDILEDYCMWRNYE MTRVLDILEDYCMWRNYEYCRLDGQTPHDE R V L W R N 0 1 0 2 1 0 1 0 0 1 2 0 1 0 0 0 0 1 1 1 0 0 12 0 1611.7425 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 511 522 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 9.1275E-05 76.465 2 1 2.7151 2.8472 NaN 1 Median 2.7151 2.8472 NaN 1 0 Median NaN NaN NaN 0 0 Median 19871000 4225400 15646000 18018000 4225400 13793000 1852900 0 1852900 14210 1391 14597 37766;37767;37768 59312;59313;59314 59312 1069 3 VLDILLEQYPALITGR AMTHITEGIQEDSLKVLDILLEQYPALITG LDILLEQYPALITGRSSILLKNFVELISHQ K V L G R S 1 1 0 1 0 1 1 1 0 2 4 0 0 0 1 0 1 0 1 1 0 0 16 0 1813.0349 A0A024R169;Q9NXF1;B7Z9D5 A0A024R169 163 178 TEX10 Testis-expressed sequence 10 protein yes no 2 0.0022563 55.452 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14211 72 14598 37769 59315 59315 1 VLDLLDPASGDLVIR ALSVTMSYLEIYQEKVLDLLDPASGDLVIR VLDLLDPASGDLVIREDCRGNILIPGLSQK K V L I R E 1 1 0 3 0 0 0 1 0 1 4 0 0 0 1 1 0 0 0 2 0 0 15 0 1594.893 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 184 198 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 3.1433E-06 98.156 2 2 1.0837 1.0605 21.317 4 Median 0.82457 0.8882 2.9085 2 0 Median 1.4822 1.28 4.4359 2 0 Median 166760000 79809000 86952000 81131000 45374000 35757000 85630000 34436000 51195000 14212 1745 14599 37770;37771;37772;37773 59316;59317;59318;59319;59320;59321;59322;59323;59324 59316 9 VLDLVEVLVTK KLQKEKALRRDFQIRVLDLVEVLVTKQPEN FQIRVLDLVEVLVTKQPENALVLELLEPLL R V L T K Q 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 1 0 0 4 0 0 11 0 1226.7486 Q9BQG0;I3L1L3 Q9BQG0 828 838 MYBBP1A Myb-binding protein 1A yes no 2 1.0318E-08 123.79 2 1 0.89096 0.97112 1.963 2 Median 0.89096 0.97112 1.963 2 0 Median NaN NaN NaN 0 0 Median 83946000 44510000 39436000 83946000 44510000 39436000 0 0 0 14213 1997 14600 37774;37775;37776 59325;59326;59327;59328;59329 59327 5 VLDNAIETEK SKMKALAVEGKRIGKVLDNAIETEKMIEKY KRIGKVLDNAIETEKMIEKYESLASDLLEW K V L E K M 1 0 1 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1130.5819 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1 D6W5C0 207 216 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.023306 53.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1658200 0 1658200 0 0 0 1658200 0 1658200 14214 415 14601 37777 59330 59330 1 VLDPASSDFTR DTQLVNSLLEKASEKVLDPASSDFTRLSVL ASEKVLDPASSDFTRLSVLDLVVALAPCAD K V L T R L 1 1 0 2 0 0 0 0 0 0 1 0 0 1 1 2 1 0 0 1 0 0 11 0 1206.5881 B3KMR5;Q5JTH9;B3KY97 B3KMR5 740 750 RRP12 RRP12-like protein yes no 2 7.4243E-05 98.249 2 2 1.1904 1.1381 25.061 4 Median 1.257 1.4216 6.5755 2 0 Median 1.1414 0.92742 4.072 2 0 Median 198730000 89543000 109190000 174150000 78622000 95533000 24580000 10922000 13659000 14215 907 14602 37778;37779;37780;37781 59331;59332;59333;59334;59335;59336;59337;59338;59339;59340 59332 10 VLDPTCTIK DRDLKHFRISKALDRVLDPTCTIKTPEITV SKALDRVLDPTCTIKTPEITVSIIKELNRR R V L I K T 0 0 0 1 1 0 0 0 0 1 1 1 0 0 1 0 2 0 0 1 0 0 9 0 1045.5478 Q8TED0;H0Y8P4 Q8TED0 380 388 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.0019674 78.516 2 0.87197 0.91956 NaN 1 Median 0.87197 0.91956 NaN 1 0 Median NaN NaN NaN 0 0 Median 61041000 18737000 42304000 61041000 18737000 42304000 0 0 0 14216 1936 14603 37782;37783 59341;59342;59343 59342 3 VLDQYIFELSR KLPMNKDVCDEGNTKVLDQYIFELSRKTQI GNTKVLDQYIFELSRKTQIPEVFLTKILES K V L S R K 0 1 0 1 0 1 1 0 0 1 2 0 0 1 0 1 0 0 1 1 0 0 11 0 1381.7242 CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229 CON__Q3MHN5 341 351 yes no 2 0.00065536 73.067 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 14217 1145 14604 37784;37785 59344;59345 59344 2 VLDSFCEGLK DAILGNPKVKAHGKKVLDSFCEGLKQLDDL AHGKKVLDSFCEGLKQLDDLKGAFASLSEL K V L L K Q 0 0 0 1 1 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1166.5642 CON__Q3SX09 CON__Q3SX09 122 131 yes yes 2 0.0014904 85.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31261000 31261000 0 31261000 31261000 0 0 0 0 + 14218 1172 14605 37786 59346 59346 1 VLDSGAPIK TIAMDGTEGLVRGQKVLDSGAPIKIPVGPE LVRGQKVLDSGAPIKIPVGPETLGRIMNVI K V L I K I 1 0 0 1 0 0 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 898.51238 H0YH81;Q0QEN7;V9HW31;P06576;F8W079 H0YH81 62 70 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 2 0.012771 57.177 2 1.3578 1.4123 4.2548 2 Median 1.3578 1.4123 4.2548 2 0 Median NaN NaN NaN 0 0 Median 34748000 11085000 23663000 34748000 11085000 23663000 0 0 0 14219 1292 14606 37787;37788 59347;59348 59348 2 VLDSYGDDYR RITRRLQQERRFLMRVLDSYGDDYRASQFT RFLMRVLDSYGDDYRASQFTIVLEDEGSQG R V L Y R A 0 1 0 3 0 0 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 10 0 1201.5251 A0A024R4Q5;P0C1Z6;A0A0G2JP55;A8MTQ3 A0A024R4Q5 123 132 TFPT TCF3 fusion partner yes no 2 0.00026133 92.062 1 0.5995 0.59417 NaN 1 Median 0.5995 0.59417 NaN 1 0 Median NaN NaN NaN 0 0 Median 12112000 7373100 4739400 12112000 7373100 4739400 0 0 0 14220 159 14607 37789 59349 59349 1 VLDVNLMGTFNVIR NLKKGQTHTLEDFQRVLDVNLMGTFNVIRL RVLDVNLMGTFNVIRLVAGEMGQNEPDQGG R V L I R L 0 1 2 1 0 0 0 1 0 1 2 0 1 1 0 0 1 0 0 3 0 0 14 0 1589.8599 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 117 130 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 1.3207E-17 131.43 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12175000 0 12175000 12175000 0 12175000 0 0 0 14221 555 14608 37790;37791 59350;59351 59351 411 2 VLEAAAQAAR LLEMDARLHEDHLERVLEAAAQAARDVHTL DHLERVLEAAAQAARDVHTLLDRVVRQHVR R V L A R D 5 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 998.55089 Q9NPD3;E9PI41 Q9NPD3 213 222 EXOSC4 Exosome complex component RRP41 yes no 2 0.0002277 93.162 1 1 0.89579 0.83536 3.385 2 Median 0.79722 0.81561 NaN 1 0 Median 1.0065 0.8556 NaN 1 0 Median 37217000 20810000 16406000 31917000 18237000 13681000 5299200 2573600 2725600 14222 2056 14609 37792;37793 59352;59353;59354;59355 59353 4 VLEALLPLK ICFFVQQFTDMEHNRVLEALLPLKGLEERV DMEHNRVLEALLPLKGLEERVAAAVDLIIK R V L L K G 1 0 0 0 0 0 1 0 0 0 4 1 0 0 1 0 0 0 0 1 0 0 9 0 994.64267 A0A0U1RQF0;P49327 A0A0U1RQF0 2381 2389 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00014296 98.299 2 1 1.7163 1.7518 NaN 1 Median 1.7163 1.7518 NaN 1 0 Median NaN NaN NaN 0 0 Median 25762000 5906000 19856000 24522000 5906000 18616000 1239700 0 1239700 14223 587 14610 37794;37795;37796 59356;59357;59358 59357 3 VLECDIIK ATEQEIRSLFEQYGKVLECDIIKNYGFVHI LFEQYGKVLECDIIKNYGFVHIEDKTAAED K V L I K N 0 0 0 1 1 0 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 988.52632 A8K9U0;Q9BWF3;E9PB51;Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5 A8K9U0 28 35 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.013465 65.252 2 1.1627 1.1922 NaN 1 Median 1.1627 1.1922 NaN 1 0 Median NaN NaN NaN 0 0 Median 17658000 8433400 9224800 17658000 8433400 9224800 0 0 0 14224 788 14611 37797;37798 59359;59360 59360 2 VLEEANQAINPK FFTPGNLKQARELIKVLEEANQAINPKLMQ LIKVLEEANQAINPKLMQLVDHRGGGGGGG K V L P K L 2 0 2 0 0 1 2 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1324.6987 Q59F66;Q92841 Q59F66 538 549 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 4.2067E-29 163.38 2 2 1.2438 1.1658 49.893 4 Median 1.5577 1.7144 11.519 2 0 Median 0.94815 0.74576 20.145 2 0 Median 105150000 39310000 65845000 97127000 35401000 61726000 8027600 3909200 4118400 14225 1801 14612 37799;37800;37801;37802 59361;59362;59363;59364;59365;59366 59362 6 VLEEVCASPQGPGALFVQSHLEDLK YLESKAHGVQKKAYRVLEEVCASPQGPGAL GPGALFVQSHLEDLKKTLLDSLRSTSSPAK R V L L K K 2 0 0 1 1 2 3 2 1 0 4 1 0 1 2 2 0 0 0 3 0 0 25 0 2722.3636 B3KMR5;Q5JTH9;B3KY97 B3KMR5 794 818 RRP12 RRP12-like protein yes no 3 1.2057E-09 57.147 2 1.5836 1.5516 NaN 1 Median 1.5836 1.5516 NaN 1 0 Median NaN NaN NaN 0 0 Median 30096000 15563000 14533000 30096000 15563000 14533000 0 0 0 14226 907 14613 37803;37804 59367;59368;59369 59367 3 VLEEVCASPQGPGALFVQSHLEDLKK YLESKAHGVQKKAYRVLEEVCASPQGPGAL PGALFVQSHLEDLKKTLLDSLRSTSSPAKR R V L K K T 2 0 0 1 1 2 3 2 1 0 4 2 0 1 2 2 0 0 0 3 0 0 26 1 2850.4586 B3KMR5;Q5JTH9;B3KY97 B3KMR5 794 819 RRP12 RRP12-like protein yes no 4 0.014333 18.798 2 1.2835 1.0915 0.67615 2 Median NaN NaN NaN 0 0 Median 1.2835 1.0915 0.67615 2 0 Median 16143000 6621300 9522200 0 0 0 16143000 6621300 9522200 14227 907 14614 37805;37806 59370;59371;59372;59373 59372 4 VLEFLASSFEVSR IEVVTSSLPELYVEKVLEFLASSFEVSRHL EKVLEFLASSFEVSRHLEFYLLWTHKLLML K V L S R H 1 1 0 0 0 0 2 0 0 0 2 0 0 2 0 3 0 0 0 2 0 0 13 0 1482.7718 Q15269;A0A0B4J2E5;A0A096LPI6 Q15269 802 814 PWP2 Periodic tryptophan protein 2 homolog yes no 2 9.9151E-09 115.18 2 2 1.0985 1.0379 4.7912 4 Median 0.98038 1.0841 6.4021 2 0 Median 1.2379 1.0301 1.3147 2 0 Median 131540000 63198000 68344000 98888000 48675000 50213000 32655000 14523000 18132000 14228 1756 14615 37807;37808;37809;37810 59374;59375;59376;59377;59378;59379;59380;59381;59382;59383;59384 59377 11 VLEGSELELAK RKHPSSPECLVSAQKVLEGSELELAKMTML SAQKVLEGSELELAKMTMLLLYHSTMSSKS K V L A K M 1 0 0 0 0 0 3 1 0 0 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1186.6445 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;G1UI36;F5H2F3;F5H3L6;F5H0Z7;F5H763;Q86XH4;F5GZW1;F5H1L0;A8K394;Q4LE64;Q14980 Q4LE64 87 97 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.00036777 91.087 2 2 1.4828 1.2004 NaN 1 Median NaN NaN NaN 0 0 Median 1.4828 1.2004 NaN 1 0 Median 60916000 52824000 8092500 43126000 43126000 0 17791000 9698400 8092500 14229 186;1747;718 14616 37811;37812;37813;37814 59385;59386;59387;59388;59389;59390 59387 6 VLELDNVK MVRRAAASKLGEFAKVLELDNVKSEIIPMF KLGEFAKVLELDNVKSEIIPMFSNLASDEQ K V L V K S 0 0 1 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 8 0 928.52295 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;C9J9C1 B4DQY1 161 168 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.0059196 88.942 2 1.3613 1.4185 2.7939 2 Median 1.3613 1.4185 2.7939 2 0 Median NaN NaN NaN 0 0 Median 35777000 15854000 19922000 35777000 15854000 19922000 0 0 0 14230 723 14617 37815;37816 59391;59392 59392 2 VLELLMYFTK LEDFKGNSKVNIKDKVLELLMYFTKHSDEE NIKDKVLELLMYFTKHSDEEVQTKAIIGLG K V L T K H 0 0 0 0 0 0 1 0 0 0 3 1 1 1 0 0 1 0 1 1 0 0 10 0 1255.6886 Q6IEH8;Q6KC79 Q6IEH8 2173 2182 NIPBL Nipped-B-like protein yes no 2 0.01949 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14231 1843 14618 37817 59393 59393 1696 1 VLELNASDER AAARELFGPELFRLRVLELNASDERGIQVV LFRLRVLELNASDERGIQVVREKVKNFAQL R V L E R G 1 1 1 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1144.5724 P35249;C9J8M3;C9JZI1;C9JXZ7;C9JTT7 P35249 105 114 RFC4 Replication factor C subunit 4 yes no 2 0.00039145 87.806 1 1 0.79162 0.75356 26.931 2 Median 0.84938 0.91163 NaN 1 0 Median 0.73779 0.6229 NaN 1 0 Median 28410000 15624000 12785000 25402000 13893000 11509000 3007700 1731200 1276500 14232 1541 14619 37818;37819 59394;59395;59396;59397 59394 4 VLELTAENER SRDKAKMRNLETQHKVLELTAENERLQKKV ETQHKVLELTAENERLQKKVEQLSRELSTL K V L E R L 1 1 1 0 0 0 3 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1172.6037 P17676;Q99557;Q9BSC0 P17676 303 312 CEBPB CCAAT/enhancer-binding protein beta yes no 2 0.00060252 84.213 1 1 1.1215 1.0626 10.621 2 Median 0.89125 0.98575 NaN 1 0 Median 1.4113 1.1455 NaN 1 0 Median 69420000 34288000 35132000 59318000 30165000 29153000 10103000 4123300 5979600 14233 1493 14620 37820;37821 59398;59399;59400 59398 3 VLENIELNK LRLHSLLGDYYQAIKVLENIELNKKSMYSR YYQAIKVLENIELNKKSMYSRVPECQVTTY K V L N K K 0 0 2 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1070.5972 Q8N7H0;B3KNG0;B0QY90;B4DQF6;B3KPB9;B0QY89;Q9Y262 Q8N7H0 26 34 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.0017345 81.548 1 0.78011 0.783 NaN 1 Median 0.78011 0.783 NaN 1 0 Median NaN NaN NaN 0 0 Median 15912000 8470200 7442000 15912000 8470200 7442000 0 0 0 14234 806 14621 37822 59401;59402 59402 2 VLEPYPSK GEGVGPQEYTLLKLKVLEPYPSKLSGLKGK YTLLKLKVLEPYPSKLSGLKGKNIFLVAAT K V L S K L 0 0 0 0 0 0 1 0 0 0 1 1 0 0 2 1 0 0 1 1 0 0 8 0 931.50148 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3 B4E266 225 232 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.049834 43.808 1 0.93005 0.81968 NaN 1 Median NaN NaN NaN 0 0 Median 0.93005 0.81968 NaN 1 0 Median 1205600 641920 563680 0 0 0 1205600 641920 563680 14235 883 14622 37823 59403;59404 59404 2 VLEQLEDLDSR SCARLAEMRQKEIPRVLEQLEDLDSRVLYY EIPRVLEQLEDLDSRVLYYSATKNGILYRV R V L S R V 0 1 0 2 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1315.662 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 972 982 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 5.9298E-08 110.14 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30239000 30239000 0 30239000 30239000 0 0 0 0 14236 222 14623 37824 59405 59405 1 VLEQLTGQTPVFSK ICVGESGDRLARAAKVLEQLTGQTPVFSKA KVLEQLTGQTPVFSKARYTVRSFGIRRNEK K V L S K A 0 0 0 0 0 2 1 1 0 0 2 1 0 1 1 1 2 0 0 2 0 0 14 0 1545.8403 Q08ES8;Q5VVD0;P62913;Q5VVC8;Q5VVC9 Q08ES8 38 51 RPL11 60S ribosomal protein L11 yes no 2 2.6064E-114 240.85 7 4 1.0128 0.95933 18.406 5 Median 0.98505 1.1736 5.0935 2 0 Median 1.0913 0.95083 12.492 3 0 Plateau 2854200000 1435900000 1418300000 2498600000 1269000000 1229700000 355590000 166910000 188680000 14237 1652 14624 37825;37826;37827;37828;37829;37830;37831;37832;37833;37834;37835 59406;59407;59408;59409;59410;59411;59412;59413;59414;59415;59416;59417;59418;59419;59420;59421;59422;59423;59424;59425;59426;59427;59428;59429;59430;59431;59432;59433 59416 28 VLEQPVVVQSVGTDGR SALAQARLLYGNDAKVLEQPVVVQSVGTDG LEQPVVVQSVGTDGRVFHFLVFQLNTTDLD K V L G R V 0 1 0 1 0 2 1 2 0 0 1 0 0 0 1 1 1 0 0 5 0 0 16 0 1681.8999 Q9BZE1;Q6TGK8;A6NHR2;S4R369;H0Y4J2 Q9BZE1 335 350 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 2.8459E-05 92.856 3 1 1.1203 1.0465 12.244 2 Median 1.1333 1.1412 NaN 1 0 Median 1.1075 0.95973 NaN 1 0 Median 12719000 5850000 6868700 10770000 4872700 5897600 1948400 977290 971090 14238 2020 14625 37836;37837;37838;37839 59434;59435;59436;59437;59438 59434 5 VLETAEDIQER ______________________________ SGVKVLETAEDIQERRQQVLDRYHRFKELS K V L E R R 1 1 0 1 0 1 3 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1301.6463 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;B4DGT1;B4DTV8;A0A0D9SFF6;A0A1B0GTB7 A0A0D9SF54 8 18 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 4.4053E-18 140.16 4 1.4811 1.4819 NaN 1 Median 1.4811 1.4819 NaN 1 0 Median NaN NaN NaN 0 0 Median 17033000 6294000 10739000 17033000 6294000 10739000 0 0 0 14239 523 14626 37840;37841;37842;37843 59439;59440;59441;59442 59440 4 VLETPQEIHTVSSEAVSLLEEVITPR LQMYYEGRFPCLEEKVLETPQEIHTVSSEA SSEAVSLLEEVITPRKDLPPLLLKLNERPA K V L P R K 1 1 0 0 0 1 5 0 1 2 3 0 0 0 2 3 3 0 0 4 0 0 26 0 2875.5179 Q9H0A0;A0A087WV29 Q9H0A0 663 688 NAT10 N-acetyltransferase 10 yes no 3 6.379E-113 211.62 1 0.9145 1.0671 NaN 1 Median 0.9145 1.0671 NaN 1 0 Median NaN NaN NaN 0 0 Median 514580000 262610000 251970000 514580000 262610000 251970000 0 0 0 14240 2023 14627 37844 59443;59444 59443 2 VLETVGVFEVPK TTRRHLSSRNRPEGKVLETVGVFEVPKQNG EGKVLETVGVFEVPKQNGKYETGQARLYDR K V L P K Q 0 0 0 0 0 0 2 1 0 0 1 1 0 1 1 0 1 0 0 4 0 0 12 0 1315.7388 B4DEM9;Q9Y2S7 B4DEM9 61 72 POLDIP2 Polymerase delta-interacting protein 2 yes no 2 0.0048177 63.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4839600 0 4839600 4839600 0 4839600 0 0 0 14241 967 14628 37845 59445 59445 1 VLEVQPEK TFQLYKSADHRTLDKVLEVQPEKLELIMDE DHRTLDKVLEVQPEKLELIMDEMKQILTPM K V L E K L 0 0 0 0 0 1 2 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 8 0 940.52295 Q15397 Q15397 294 301 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.0023621 100.45 4 1 0.95232 0.87959 15.585 2 Median 0.91309 0.98206 NaN 1 0 Median 0.99323 0.7878 NaN 1 0 Median 43213000 23690000 19522000 40208000 22405000 17803000 3004500 1285500 1719000 14242 1761 14629 37846;37847;37848;37849;37850 59446;59447;59448;59449;59450;59451 59447 6 VLEVYR MSEVSGFPMPQLDPRVLEVYRGVREVLSKY FPMPQLDPRVLEVYRGVREVLSKYRSGKLP R V L Y R G 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 6 0 777.43849 Q13895;H7BY94 Q13895 181 186 BYSL Bystin yes no 2 0.036404 126.05 1 0.98321 1.131 NaN 1 Median 0.98321 1.131 NaN 1 0 Median NaN NaN NaN 0 0 Median 75466000 37145000 38322000 75466000 37145000 38322000 0 0 0 14243 1724 14630 37851 59452 59452 1 VLFASQEIPASPFR TVKYVPPAAGRYTIKVLFASQEIPASPFRV KVLFASQEIPASPFRVKVDPSHDASKVKAE K V L F R V 2 1 0 0 0 1 1 0 0 1 1 0 0 2 2 2 0 0 0 1 0 0 14 0 1560.83 O75369;A0A024R321;Q68CT4;E7EN95 O75369 823 836 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.026341 32.159 1 1.1825 1.0711 NaN 1 Median NaN NaN NaN 0 0 Median 1.1825 1.0711 NaN 1 0 Median 2186400 878050 1308300 0 0 0 2186400 878050 1308300 14244 1402 14631 37852 59453 59453 1 VLFDPFELDTSVTPGR ATTTEGLLIYSLDTRVLFDPFELDTSVTPG LFDPFELDTSVTPGRVREALRQQDFTRAIL R V L G R V 0 1 0 2 0 0 1 1 0 0 2 0 0 2 2 1 2 0 0 2 0 0 16 0 1791.9043 Q15269;A0A0B4J2E5 Q15269 734 749 PWP2 Periodic tryptophan protein 2 homolog yes no 2 1.2402E-34 162.22 3 1 0.77476 0.89261 3.63 2 Median 0.77476 0.89261 3.63 2 0 Median NaN NaN NaN 0 0 Median 440450000 269280000 171180000 385000000 213820000 171180000 55453000 55453000 0 14245 1756 14632 37853;37854;37855;37856 59454;59455;59456;59457;59458;59459 59454 6 VLFEQAFSFHGK PNFTPFPDEWTVEDKVLFEQAFSFHGKTFH EDKVLFEQAFSFHGKTFHRIQQMLPDKSIA K V L G K T 1 0 0 0 0 1 1 1 1 0 1 1 0 3 0 1 0 0 0 1 0 0 12 0 1408.7139 Q9UKL0;Q9P2K3;E9PQE5;B4DV59 Q9UKL0 201 212 RCOR1;RCOR3 REST corepressor 1;REST corepressor 3 yes no 3 0.051635 42.095 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14246 2106 14633 37857 59460 59460 1 VLFPATGYLSIVWK ESPDHYLVDHTLDGRVLFPATGYLSIVWKT RVLFPATGYLSIVWKTLARALGLGVEQLPV R V L W K T 1 0 0 0 0 0 0 1 0 1 2 1 0 1 1 1 1 1 1 2 0 0 14 0 1592.8967 A0A0U1RQF0;P49327 A0A0U1RQF0 884 897 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 2.6626E-06 104.82 2 1.4343 1.4495 4.9399 2 Median 1.4343 1.4495 4.9399 2 0 Median NaN NaN NaN 0 0 Median 21074000 8518100 12556000 21074000 8518100 12556000 0 0 0 14247 587 14634 37858;37859 59461;59462;59463 59461 3 VLFRPSDTANSSNQDALSSNTSLK LRNHPSFYVFNHRGRVLFRPSDTANSSNQD NSSNQDALSSNTSLKLRKLESLRR______ R V L L K L 2 1 3 2 0 1 0 0 0 0 3 1 0 1 1 6 2 0 0 1 0 0 24 1 2551.2514 Q8N4V1 Q8N4V1 99 122 MMGT1 Membrane magnesium transporter 1 yes yes 3 4.6108E-06 45.546 1 0.73861 0.83843 NaN 1 Median 0.73861 0.83843 NaN 1 0 Median NaN NaN NaN 0 0 Median 24077000 14005000 10072000 24077000 14005000 10072000 0 0 0 14248 1909 14635 37860 59464 59464 1 VLFSAGHDGNVIVWDLAR EDEVFVLEPHPFDPRVLFSAGHDGNVIVWD SAGHDGNVIVWDLARGVKIRSYFNMIEGQG R V L A R G 2 1 1 2 0 0 0 2 1 1 2 0 0 1 0 1 0 1 0 3 0 0 18 0 1968.0217 Q8WWQ0 Q8WWQ0 481 498 PHIP PH-interacting protein yes yes 2;3 7.6794E-18 118.24 3 2 0.70617 0.81509 25.978 5 Median 0.68494 0.75813 10.343 3 0 Plateau 1.3808 1.1389 7.7371 2 0 Median 142210000 75897000 66312000 108750000 60729000 48017000 33462000 15167000 18295000 14249 1942 14636 37861;37862;37863;37864;37865 59465;59466;59467;59468;59469;59470 59470 6 VLFTCFK SIPSMVDGLKPGQRKVLFTCFKRNDKREVK GLKPGQRKVLFTCFKRNDKREVKVAQLAGS K V L F K R 0 0 0 0 1 0 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 7 0 913.47316 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 P11388 729 735 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.026865 74.439 2 1 0.71546 0.82583 15.25 3 Median 0.70151 0.80977 2.7759 2 0 Median 1.2845 1.0523 NaN 1 0 Median 447320000 253300000 194010000 411480000 238040000 173450000 35834000 15268000 20565000 14250 1471;1679 14637 37866;37867;37868 59471;59472;59473;59474;59475;59476 59474 6 VLFTGVVDAR SLRRTKLNQESTAPKVLFTGVVDARGERAV STAPKVLFTGVVDARGERAVLALGGSLAGS K V L A R G 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 3 0 0 10 0 1075.6026 Q14676;B4DYH4 Q14676 1895 1904 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0012794 74.376 2 1 0.69494 0.70488 18.835 3 Median 0.684 0.69099 2.8132 2 0 Median 1.0598 0.95579 NaN 1 0 Median 39723000 22831000 16892000 37497000 21624000 15873000 2226400 1207400 1019000 14251 1738 14638 37869;37870;37871 59477;59478;59479;59480 59477 4 VLGELWPLFGGR LICGPNGCGKSSLFRVLGELWPLFGGRLTK LFRVLGELWPLFGGRLTKPERGKLFYVPQR R V L G R L 0 1 0 0 0 0 1 3 0 0 3 0 0 1 1 0 0 1 0 1 0 0 12 0 1342.7398 B4DL07;P28288;B4DZ22 B4DL07 509 520 ABCD3 ATP-binding cassette sub-family D member 3 yes no 2 0.00014575 93.111 2 2.124 2.1612 8.0493 2 Median 2.124 2.1612 8.0493 2 0 Median NaN NaN NaN 0 0 Median 12892000 4818200 8073400 12892000 4818200 8073400 0 0 0 14252 994 14639 37872;37873 59481;59482;59483;59484;59485 59483 5 VLGENAIAVR PFAQSFDIYLTQILRVLGENAIAVRTKAMK TQILRVLGENAIAVRTKAMKCLSEVVAVDP R V L V R T 2 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 10 0 1040.5978 Q6IEH8;Q6KC79 Q6IEH8 1780 1789 NIPBL Nipped-B-like protein yes no 2 0.00014885 95.741 1 1 0.6715 0.62594 0.84047 2 Median 0.62098 0.62223 NaN 1 0 Median 0.72613 0.62967 NaN 1 0 Median 19694000 12656000 7037300 17219000 11081000 6137700 2474700 1575100 899590 14253 1843 14640 37874;37875 59486;59487;59488 59487 3 VLGIQVDTDGSGR GRDRVGVGIRSSYIRVLGIQVDTDGSGRSF IRVLGIQVDTDGSGRSFAGAVSPQEEEEFR R V L G R S 0 1 0 2 0 1 0 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1315.6732 B1AHB1;Q53FG5;B1AHB0;A8K521;P33992;B4DQ39;B3KVF0;B4DVK5 B1AHB1 253 265 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 2 0.00027369 66.92 2 0.74495 0.64064 9.9098 2 Median NaN NaN NaN 0 0 Median 0.74495 0.64064 9.9098 2 0 Median 7677300 4131000 3546300 0 0 0 7677300 4131000 3546300 14254 745 14641 37876;37877 59489;59490;59491 59490 3 VLGKPEPAAQPVPESLPGEPEILPQAPANAHLK ERLLRRTQTKRSVYRVLGKPEPAAQPVPES EPEILPQAPANAHLKDLDEEIFDDDDFYHQ R V L L K D 5 0 1 0 0 2 4 2 1 1 4 2 0 0 8 1 0 0 0 2 0 0 33 1 3393.8296 Q9NY61;A0A087WWS8 Q9NY61 419 451 AATF Protein AATF yes no 4 7.7436E-05 40.544 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129340000 129340000 0 129340000 129340000 0 0 0 0 14255 2080 14642 37878;37879 59492;59493;59494 59492 3 VLGLNEDPLK HAQVVEELSNFKSQKVLGLNEDPLKWWSDR FKSQKVLGLNEDPLKWWSDRLALFPLLPKV K V L L K W 0 0 1 1 0 0 1 1 0 0 3 1 0 0 1 0 0 0 0 1 0 0 10 0 1096.6128 A0A024RBU4;O96006 A0A024RBU4 580 589 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 2 0.008091 65.305 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16553000 16553000 0 16553000 16553000 0 0 0 0 14256 347 14643 37880;37881 59495;59496 59495 2 VLGLVLLR IKPKNAKQPEREEKRVLGLVLLRGENLVSM PEREEKRVLGLVLLRGENLVSMTVEGPPPK R V L L R G 0 1 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 2 0 0 8 0 881.60622 J3QLE5;Q66K91;Q5XPV6;B4DVS0;X5DP00;Q53HE7;Q9UIS4;Q15182;P63162;P14678;Q6LBS1 J3QLE5 66 73 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated protein;Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B yes no 2 0.002056 103.29 2 1.1462 1.1603 5.9599 2 Median 1.1462 1.1603 5.9599 2 0 Median NaN NaN NaN 0 0 Median 32824000 12830000 19994000 32824000 12830000 19994000 0 0 0 14257 1041 14644 37882;37883 59497;59498;59499;59500 59498 4 VLGPAAYNVPLPK ______________________________ ______________________________ M V L P K K 2 0 1 0 0 0 0 1 0 0 2 1 0 0 3 0 0 0 1 2 0 0 13 0 1337.7707 B4DS66;C9J406 B4DS66 2 14 IMMT no no 2 0.00015591 85.731 2 2 1.2513 1.1607 40.899 4 Median 0.74541 0.82271 0.78169 2 0 Median 2.1339 1.6692 3.492 2 0 Median 112230000 65002000 47226000 104670000 62168000 42503000 7556700 2834600 4722200 14258 1029;1128 14645 37884;37885;37886;37887 59501;59502;59503;59504;59505;59506 59502 6 VLGQLHGGPSSCSATGTNR EPGSSGSPIYSPEKRVLGQLHGGPSSCSAT LHGGPSSCSATGTNRSDQYGRVFTSWTGGG R V L N R S 1 1 1 0 1 1 0 4 1 0 2 0 0 0 1 3 2 0 0 1 0 0 19 0 1897.9065 CON__P15636 CON__P15636 410 428 yes yes 2;3 1.1713E-96 162.81 3 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 455060000 455060000 0 408840000 408840000 0 46229000 46229000 0 + 14259 1163 14646 37888;37889;37890;37891;37892;37893 59507;59508;59509;59510;59511;59512;59513 59509 7 VLGSEGEEEDEALSPAK ESDSPVKRPGRKAARVLGSEGEEEDEALSP GSEGEEEDEALSPAKGQKPALDCSQVSPPR R V L A K G 2 0 0 1 0 0 5 2 0 0 2 1 0 0 1 2 0 0 0 1 0 0 17 0 1758.816 B4E135;M0R0Q7;Q59HG7;P18858;Q76GR4;M0QY71;M0R1G7;F5GZ28;B4DM52 B4E135 63 79 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.0013748 56.225 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14260 1066 14647 37894 59514 59514 1 VLGTAFDPFLGGK AFQVSACAFNKGKLKVLGTAFDPFLGGKNF LKVLGTAFDPFLGGKNFDEKLVEHFCAEFK K V L G K N 1 0 0 1 0 0 0 3 0 0 2 1 0 2 1 0 1 0 0 1 0 0 13 0 1320.7078 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4 A0A024RDQ0 222 234 HSPH1 Heat shock protein 105 kDa yes no 2 7.8467E-14 134.59 2 2 1.6307 1.5079 47.112 4 Median 2.0474 2.1737 1.6819 2 0 Median 1.2294 0.97038 12.302 2 0 Median 47066000 16618000 30447000 39052000 12983000 26069000 8013600 3635100 4378600 14261 390 14648 37895;37896;37897;37898 59515;59516;59517;59518;59519 59517 5 VLGTEAVQDPTK MPPPEPKVRISNLMRVLGTEAVQDPTKVEA LMRVLGTEAVQDPTKVEAHVRAQMAKRQKA R V L T K V 1 0 0 1 0 1 1 1 0 0 1 1 0 0 1 0 2 0 0 2 0 0 12 0 1256.6612 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 470 481 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 2 0.00024208 87.298 2 1 1.2064 1.1187 40.451 2 Median 1.4433 1.4891 NaN 1 0 Median 1.0083 0.84041 NaN 1 0 Median 20043000 9465900 10577000 18294000 8480200 9813500 1749200 985700 763520 14262 848 14649 37899;37900;37901 59520;59521;59522 59521 3 VLGTSPEAIDSAENR LPNNMAMALHRQQCRVLGTSPEAIDSAENR VLGTSPEAIDSAENRFKFSRLLDTIGISQP R V L N R F 2 1 1 1 0 0 2 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 15 0 1557.7635 Q53SY7;F8VPD4;P27708 Q53SY7 960 974 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 4.5292E-07 103.43 3 1 0.95425 0.96804 NaN 1 Median 0.95425 0.96804 NaN 1 0 Median NaN NaN NaN 0 0 Median 25005000 7452200 17552000 23682000 7452200 16230000 1322200 0 1322200 14263 1259 14650 37902;37903;37904;37905 59523;59524;59525;59526 59523 4 VLGVPIIVQASQAEK DVSSVPLAIGLTGQRVLGVPIIVQASQAEK VLGVPIIVQASQAEKNRAAAMANNLQKGSA R V L E K N 2 0 0 0 0 2 1 1 0 2 1 1 0 0 1 1 0 0 0 3 0 0 15 0 1550.9032 A0A0U1RQH7;B7Z4L7;Q6N037;E1P5S2;G3XAC6;B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;Q7Z3L0;H0Y4X3;Q5QP23 A0A0U1RQH7 65 79 DKFZp686A11192;RNPC2;RBM39;DKFZp781C0423;DKFZp781I1140 RNA-binding protein 39 yes no 2 5.2506E-07 101.95 2 2 1.0999 1.2819 48.595 4 Linear 1.0138 1.119 2.9305 2 0 Median 0.61286 0.48372 6.4394 2 0 Median 147130000 75079000 72051000 118540000 56776000 61760000 28593000 18303000 10290000 14264 588 14651 37906;37907;37908;37909 59527;59528;59529;59530;59531;59532;59533 59529 7 VLHALQEAAPEVVQPTTVQSSTIPSLLR LSSKGSFADLGLEPRVLHALQEAAPEVVQP QPTTVQSSTIPSLLRGRHVVCAAETGSGKT R V L L R G 3 1 0 0 0 3 2 0 1 1 4 0 0 0 3 3 3 0 0 4 0 0 28 0 2983.6342 Q9NUL7 Q9NUL7 137 164 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 3 0.012293 20.455 2 1.6683 1.4569 4.948 2 Median NaN NaN NaN 0 0 Median 1.6683 1.4569 4.948 2 0 Median 6232700 2408900 3823800 0 0 0 6232700 2408900 3823800 14265 2072 14652 37910;37911 59534;59535 59534 2 VLHIPEFYVGSILR ______________________________ KVLHIPEFYVGSILRVTTADPYASGKISQF K V L L R V 0 1 0 0 0 0 1 1 1 2 2 0 0 1 1 1 0 0 1 2 0 0 14 0 1641.9243 S4R3W9;A0A0A0MRF4;B4DIG4;A8K5D5;P49406 S4R3W9 7 20 MRPL19 39S ribosomal protein L19, mitochondrial yes no 3 0.00032755 43.813 2 2 1.1526 1.1397 22.175 3 Median 1.1381 1.1397 NaN 1 0 Median 1.4427 1.254 30.375 2 0 Median 15373000 5582100 9790800 11949000 4015900 7933200 3423800 1566300 1857500 14266 465 14653 37912;37913;37914;37915 59536;59537;59538;59539;59540 59538 5 VLHNAQEVEK EAFKASRNLQDVVERVLHNAQEVEKEPGQR DVVERVLHNAQEVEKEPGQRRALSVQASLM R V L E K E 1 0 1 0 0 1 2 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1165.6091 P49916;B7Z6I3;K7ERZ5 P49916 454 463 LIG3 DNA ligase 3;DNA ligase yes no 2;3 2.0999E-08 139.43 2 0.61637 0.63913 10.19 2 Median 0.61637 0.63913 10.19 2 0 Median NaN NaN NaN 0 0 Median 16334000 9614000 6720300 16334000 9614000 6720300 0 0 0 14267 1589 14654 37916;37917 59541;59542;59543 59541 3 VLIFSQMTK LLQKMLKNLKEGGHRVLIFSQMTKMLDLLE KEGGHRVLIFSQMTKMLDLLEDFLEHEGYK R V L T K M 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 9 0 1065.5893 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;K7EMY3;B3KRD4;Q12873;B4DLC6;B4DKV1 F5GWX5 1062 1070 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.0010824 75.043 2 1 1.2409 1.3911 20.094 3 Plateau 1.2409 1.3684 2.4096 2 0 Median 1.2115 0.96737 NaN 1 0 Median 102210000 44404000 57802000 99792000 43340000 56452000 2414700 1064200 1350400 14268 515;1701 14655 37918;37919;37920 59544;59545;59546;59547 59546 379 4 VLIFSQMVR LLDKLLIRLRERGNRVLIFSQMVRMLDILA RERGNRVLIFSQMVRMLDILAEYLKYRQFP R V L V R M 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 1 0 0 0 2 0 0 9 0 1091.6161 O14646;H0YJG4;B4DLD8;H3BTW3;B4DR07;Q461N2;B7ZML1;A0A024R7V7;Q9HCK8;Q8TD26;Q3L8U1;Q9P2D1;A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 O14646 807 815 CHD1;CHD8;CHD9;CHD7;CHD6;CHD2 Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 6;Chromodomain-helicase-DNA-binding protein 9;Chromodomain-helicase-DNA-binding protein 7;Chromodomain-helicase-DNA-binding protein 2 no no 2 0.051188 37.558 1 1.0065 0.89283 NaN 1 Median NaN NaN NaN 0 0 Median 1.0065 0.89283 NaN 1 0 Median 1922300 1018800 903550 0 0 0 1922300 1018800 903550 14269 1366;354 14656 37921 59548 59548 1 VLIGENEK SKKQGKQEAADAALRVLIGENEKAERMGFT AADAALRVLIGENEKAERMGFTEVTPVTGA R V L E K A 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 900.49165 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 791 798 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.0011347 111.82 2 1.8669 1.9345 15.524 2 Median 1.8669 1.9345 15.524 2 0 Median NaN NaN NaN 0 0 Median 30989000 10465000 20524000 30989000 10465000 20524000 0 0 0 14270 5 14657 37922;37923 59549;59550 59550 2 VLIGGDETPEGQR LAEGTAIKDLKNPDRVLIGGDETPEGQRAV DRVLIGGDETPEGQRAVQALCAVYEHWVPR R V L Q R A 0 1 0 1 0 1 2 3 0 1 1 0 0 0 1 0 1 0 0 1 0 0 13 0 1369.6838 O60701;Q9NQ81 O60701 178 190 UGDH;GDH UDP-glucose 6-dehydrogenase yes no 2 0.0044503 48.44 1 1.8368 1.8341 NaN 1 Median 1.8368 1.8341 NaN 1 0 Median NaN NaN NaN 0 0 Median 16710000 5666200 11043000 16710000 5666200 11043000 0 0 0 14271 1397 14658 37924 59551 59551 1 VLIGVGK PVEEVPAAIAPFQGRVLIGVGKLLRVYDLG AIAPFQGRVLIGVGKLLRVYDLGKKKLLRK R V L G K L 0 0 0 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 2 0 0 7 0 684.45341 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 959 965 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.032615 65.263 2 1.3858 1.4632 NaN 1 Median 1.3858 1.4632 NaN 1 0 Median NaN NaN NaN 0 0 Median 38546000 11689000 26857000 38546000 11689000 26857000 0 0 0 14272 764 14659 37925;37926 59552;59553;59554 59554 3 VLIIGGGDGGVLR MIANLPLCSHPNPRKVLIIGGGDGGVLREV RKVLIIGGGDGGVLREVVKHPSVESVVQCE K V L L R E 0 1 0 1 0 0 0 5 0 2 2 0 0 0 0 0 0 0 0 2 0 0 13 0 1224.719 P19623;K7ESL0 P19623 97 109 SRM Spermidine synthase yes no 2 0.003057 65.347 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14273 1500 14660 37927 59555 59555 1 VLIIGSGGR ______________________________ ______________________________ R V L G R E 0 1 0 0 0 0 0 3 0 2 1 0 0 0 0 1 0 0 0 1 0 0 9 0 870.5287 Q3B7A7;Q59HH3;P22102;Q15374;C9JBJ1;C9JTV6;F8WD69;C9JZG2;C9JKQ7 Q3B7A7 5 13 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 1.1004E-05 109.36 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 154230000 0 154230000 154230000 0 154230000 0 0 0 14274 1507 14661 37928;37929;37930 59556;59557;59558 59557 3 VLIQVGYEPLPPTIGR GSGLTILSQPLMYVKVLIQVGYEPLPPTIG LIQVGYEPLPPTIGRNIFGRQVCQLPGLFS K V L G R N 0 1 0 0 0 1 1 2 0 2 2 0 0 0 3 0 1 0 1 2 0 0 16 0 1750.9982 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 26 41 MTCH2 Mitochondrial carrier homolog 2 yes no 2 0.00015107 72.731 2 2 1.4402 1.3818 9.6147 4 Median 1.3671 1.428 7.5358 2 0 Median 1.5567 1.3 11.508 2 0 Median 54709000 20329000 34381000 44913000 16621000 28292000 9796300 3707300 6089000 14275 2152 14662 37931;37932;37933;37934 59559;59560;59561;59562;59563;59564;59565;59566;59567;59568;59569;59570 59561 12 VLISDSLDPCCR ______________________________ LRKVLISDSLDPCCRKILQDGGLQVVEKQN K V L C R K 0 1 0 2 2 0 0 0 0 1 2 0 0 0 1 2 0 0 0 1 0 0 12 0 1433.6643 O43175;V9HW79 O43175 9 20 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 3.4947E-13 135.63 2 2.6326 2.8093 0.23181 2 Median 2.6326 2.8093 0.23181 2 0 Median NaN NaN NaN 0 0 Median 75348000 20572000 54777000 75348000 20572000 54777000 0 0 0 14276 1382 14663 37935;37936 59571;59572;59573 59572 3 VLISTDLTSR QRLDAMAKLKHFHCRVLISTDLTSRGIDAE HFHCRVLISTDLTSRGIDAEKVNLVVNLDV R V L S R G 0 1 0 1 0 0 0 0 0 1 2 0 0 0 0 2 2 0 0 1 0 0 10 0 1103.6186 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6 Q8TDR3 362 371 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 2 0.0078188 56.916 1 1.5787 1.6134 NaN 1 Median 1.5787 1.6134 NaN 1 0 Median NaN NaN NaN 0 0 Median 9997600 3349300 6648200 9997600 3349300 6648200 0 0 0 14277 1901 14664 37937 59574 59574 1 VLISTDVWAR ERESIMKEFRSGASRVLISTDVWARGLDVP SGASRVLISTDVWARGLDVPQVSLIINYDL R V L A R G 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 2 0 0 10 0 1158.6397 A0A024R8W0;P38919 A0A024R8W0 330 339 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.0040033 62.104 2 1.9264 2.0796 1.5233 2 Median 1.9264 2.0796 1.5233 2 0 Median NaN NaN NaN 0 0 Median 80883000 28845000 52038000 80883000 28845000 52038000 0 0 0 14278 261 14665 37938;37939 59575;59576;59577 59577 3 VLITTDLLAR ERDVIMREFRSGSSRVLITTDLLARGIDVQ SGSSRVLITTDLLARGIDVQQVSLVINYDL R V L A R G 1 1 0 1 0 0 0 0 0 1 3 0 0 0 0 0 2 0 0 1 0 0 10 0 1113.6758 A8K7F6;P60842;B4DNH2;E7EQG2;Q14240;Q9NZE6;Q96B07 A8K7F6 325 334 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 0.00012052 96.668 2 2 1.5525 1.5666 34.081 4 Median 1.7732 2.0761 0.70963 2 0 Median 1.3363 1.1524 4.3115 2 0 Median 634290000 231830000 402470000 570670000 204850000 365820000 63629000 26981000 36648000 14279 770 14666 37940;37941;37942;37943 59578;59579;59580;59581;59582;59583;59584;59585;59586;59587;59588;59589 59589 12 VLITTLITAGR GEYVFPAKKKLQEYRVLITTLITAGRLVSA QEYRVLITTLITAGRLVSAQFPIDHFTHIF R V L G R L 1 1 0 0 0 0 0 1 0 2 2 0 0 0 0 0 3 0 0 1 0 0 11 0 1156.718 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 556 566 MOV10 Putative helicase MOV-10 yes no 2 0.0030512 60.518 2 2 1.3363 1.3404 27.553 3 Plateau 1.3363 1.3404 NaN 1 0 Median 0.96571 0.84365 9.4427 2 0 Median 25827000 14295000 11532000 23165000 12971000 10195000 2661500 1324500 1336900 14280 1102 14667 37944;37945;37946;37947 59590;59591;59592;59593;59594 59591 5 VLKQVHPDTGISSK RKRSRKESYSVYVYKVLKQVHPDTGISSKA KVLKQVHPDTGISSKAMGIMNSFVNDIFER K V L S K A 0 0 0 1 0 1 0 1 1 1 1 2 0 0 1 2 1 0 0 2 0 0 14 1 1507.8358 B2R4S9;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;A8K9J7;A0A024RCL8;B4DR52;P57053;O60814;Q0D2M2;Q16778;P33778;P23527;A0A024RCJ2;P06899;Q8N257 B2R4S9 45 58 HIST1H2BI;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2;3;4 3.6801E-69 207.47 5 2 1.0133 1.1732 26.649 7 Median 1.0325 1.2191 11.128 5 0 Median 0.8931 0.76548 11.487 2 0 Median 521390000 256750000 264650000 511090000 251120000 259970000 10304000 5625000 4679300 14281 34;1513 14668 37948;37949;37950;37951;37952;37953;37954 59595;59596;59597;59598;59599;59600;59601;59602;59603;59604;59605 59599 11 VLLALHDR KPIPGDLYRACLYERVLLALHDRAPQLKIS RACLYERVLLALHDRAPQLKISDDRLTVVG R V L D R A 1 1 0 1 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 935.55525 A8K6T5;Q9UBL3;F5H8F7;B4DPT1 A8K6T5 381 388 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 3 0.0094076 47.198 1 0.73745 0.73859 NaN 1 Median 0.73745 0.73859 NaN 1 0 Median NaN NaN NaN 0 0 Median 18713000 7183300 11529000 18713000 7183300 11529000 0 0 0 14282 763 14669 37955 59606;59607 59606 2 VLLATLSIPITPER RKNLTQDEMQRMSTRVLLATLSIPITPERT RVLLATLSIPITPERTDIARLLDMDGIIVE R V L E R T 1 1 0 0 0 0 1 0 0 2 3 0 0 0 2 1 2 0 0 1 0 0 14 0 1521.913 Q05BS0;Q6P1R0;Q3B770;Q7Z5T5;Q24JU4;J9R021;Q14152 Q05BS0 322 335 EIF3A;eIF3a Eukaryotic translation initiation factor 3 subunit A yes no 2 3.3493E-05 91.937 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9576300 0 9576300 9576300 0 9576300 0 0 0 14283 1340 14670 37956;37957 59608;59609 59608 2 VLLCDPEAK NPEKKYHIGDEVKCRVLLCDPEAKKLMMTL DEVKCRVLLCDPEAKKLMMTLKKTLIESKL R V L A K K 1 0 0 1 1 0 1 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1043.5321 Q14690;B4DH82;B4DES7 Q14690 507 515 PDCD11 Protein RRP5 homolog yes no 2 0.017824 60.589 2 2 1.2979 1.0504 5.1832 2 Median NaN NaN NaN 0 0 Median 1.2979 1.0504 5.1832 2 0 Median 105080000 5699800 99377000 91149000 0 91149000 13928000 5699800 8227800 14284 1741 14671 37958;37959;37960;37961 59610;59611;59612;59613;59614 59611 5 VLLDAPCSGTGVISK YDGRQFPKVVGGFDRVLLDAPCSGTGVISK VLLDAPCSGTGVISKDPAVKTNKDEKDILR R V L S K D 1 0 0 1 1 0 0 2 0 1 2 1 0 0 1 2 1 0 0 2 0 0 15 0 1515.7967 P46087 P46087 457 471 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 1.7273E-30 155.48 2 2 0.9343 0.96766 5.5302 4 Linear 0.83925 0.95253 0.054659 2 0 Median 1.0528 0.86658 1.5257 2 0 Median 304880000 152490000 152390000 236530000 118800000 117730000 68349000 33687000 34662000 14285 1570 14672 37962;37963;37964;37965 59615;59616;59617;59618;59619;59620;59621 59616 7 VLLDIFTGVR GEKRKAADETLCQTKVLLDIFTGVRLYLPP LCQTKVLLDIFTGVRLYLPPSTPDFSRLRR K V L V R L 0 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 2 0 0 10 0 1131.6652 P49916;B7Z6I3 P49916 933 942 LIG3 DNA ligase 3;DNA ligase yes no 2 0.00041053 87.308 2 2 0.59519 0.57548 5.312 4 Median 0.58066 0.59583 2.8212 2 0 Median 0.62274 0.55119 4.0064 2 0 Median 44761000 27811000 16951000 40214000 25098000 15116000 4546900 2712500 1834400 14286 1589 14673 37966;37967;37968;37969 59622;59623;59624;59625;59626;59627;59628;59629;59630 59622 9 VLLDLSAFLK NGVALRPWDGNSDDRVLLDLSAFLKTIALN NSDDRVLLDLSAFLKTIALNGVEDVRTVLE R V L L K T 1 0 0 1 0 0 0 0 0 0 4 1 0 1 0 1 0 0 0 1 0 0 10 0 1117.6747 Q0VAB1;A0A024R0M6;Q3ZCQ8;M0R0C3;M0R2F8;M0R003 Q0VAB1 378 387 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 2 0.00051211 85.67 2 1.6278 1.6584 6.1795 2 Median 1.6278 1.6584 6.1795 2 0 Median NaN NaN NaN 0 0 Median 28686000 10345000 18341000 28686000 10345000 18341000 0 0 0 14287 53 14674 37970;37971 59631;59632;59633;59634 59634 4 VLLDNVENK TLDSFMQHDVQELCRVLLDNVENKMKGTCV VQELCRVLLDNVENKMKGTCVEGTIPKLFR R V L N K M 0 0 2 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 1042.5659 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q93009 302 310 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.00092483 92.439 1 0.72298 0.73906 NaN 1 Median 0.72298 0.73906 NaN 1 0 Median NaN NaN NaN 0 0 Median 31581000 19462000 12118000 31581000 19462000 12118000 0 0 0 14288 1954 14675 37972 59635;59636 59636 2 VLLESEQFLTELTR ______________________________ MVLLESEQFLTELTRLFQKCRTSGSVYITL M V L T R L 0 1 0 0 0 1 3 0 0 0 4 0 0 1 0 1 2 0 0 1 0 0 14 0 1676.8985 P37108;H0YLA2 P37108 2 15 SRP14 Signal recognition particle 14 kDa protein yes no 2 1.9703E-29 151.1 2 1 0.90892 1.0014 8.8655 2 Median 0.90892 1.0014 8.8655 2 0 Median NaN NaN NaN 0 0 Median 101470000 56781000 44691000 93324000 48633000 44691000 8147800 8147800 0 14289 1549 14676 37973;37974;37975 59637;59638;59639;59640;59641 59638 5 VLLFSLPHPEALLAQQPPDAVK LPRLGLLALACSDGKVLLFSLPHPEALLAQ HPEALLAQQPPDAVKPAIYKVQCVATLQVG K V L V K P 3 0 0 1 0 2 1 0 1 0 5 1 0 1 4 1 0 0 0 2 0 0 22 0 2382.3311 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 508 529 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 1.0762E-07 57.496 2 1 0.66033 0.69403 36.124 2 Median 0.66033 0.69403 36.124 2 0 Median NaN NaN NaN 0 0 Median 35065000 19703000 15362000 32862000 17500000 15362000 2202900 2202900 0 14290 1938 14677 37976;37977;37978 59642;59643;59644;59645;59646;59647 59645 6 VLLGETGK RAYQKQPTIFQNKKRVLLGETGKEKLPRYY IFQNKKRVLLGETGKEKLPRYYKNIGLGFK R V L G K E 0 0 0 0 0 0 1 2 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 815.47527 P62280;M0QZC5;M0R1H6 P62280 23 30 RPS11 40S ribosomal protein S11 yes no 2 0.011107 70.69 1 2 1.0979 1.064 7.789 3 Plateau 0.91097 1.064 NaN 1 0 Median 1.1306 0.93835 4.0073 2 0 Median 359870000 185120000 174750000 277420000 146190000 131230000 82459000 38939000 43520000 14291 1641 14678 37979;37980;37981 59648;59649;59650;59651 59648 4 VLLGPLSPYTIEFLR LALLLMTLGQQDVSKVLLGPLSPYTIEFLR VLLGPLSPYTIEFLRHLKSFFQIMFKIETK K V L L R H 0 1 0 0 0 0 1 1 0 1 4 0 0 1 2 1 1 0 1 1 0 0 15 0 1716.9814 Q9Y2P8;Q5VZU3 Q9Y2P8 315 329 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 1.481E-30 156.58 1 2 1.059 1.0325 17.77 2 Median 1.0197 1.1707 NaN 1 0 Median 1.0997 0.91056 NaN 1 0 Median 208460000 105960000 102500000 189060000 93889000 95168000 19403000 12066000 7337100 14292 2125 14679 37982;37983;37984 59652;59653;59654;59655;59656 59652 5 VLLGVGDPK LRLLLETHLPSKKKKVLLGVGDPKIGAAIQ PSKKKKVLLGVGDPKIGAAIQEELGYNCQT K V L P K I 0 0 0 1 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 2 0 0 9 0 896.53312 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 91 99 NOP56 Nucleolar protein 56 yes no 2 0.0018938 79.474 2 2 0.85046 0.82788 5.7996 4 Median 0.75163 0.87087 0.18261 2 0 Median 0.96085 0.78766 0.06626 2 0 Median 517490000 296190000 221310000 455050000 265090000 189960000 62442000 31099000 31342000 14293 785 14680 37985;37986;37987;37988 59657;59658;59659;59660;59661;59662;59663;59664 59658 8 VLLLAGR YLKALDTRMAAESRRVLLLAGRLAAQSLDT RMAAESRRVLLLAGRLAAQSLDTSGLRHVQ R V L G R L 1 1 0 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 740.49086 P07199 P07199 292 298 CENPB Major centromere autoantigen B yes yes 2 0.0125 105.42 2 1.0227 1.0775 3.6988 2 Median 1.0227 1.0775 3.6988 2 0 Median NaN NaN NaN 0 0 Median 63147000 31031000 32116000 63147000 31031000 32116000 0 0 0 14294 1450 14681 37989;37990 59665;59666 59665 2 VLLLIDDEYK LQSLLLPVMDQDYAKVLLLIDDEYKVTAFP QDYAKVLLLIDDEYKVTAFPATRNVLRQLH K V L Y K V 0 0 0 2 0 0 1 0 0 1 3 1 0 0 0 0 0 0 1 1 0 0 10 0 1219.67 Q8N766 Q8N766 639 648 EMC1 ER membrane protein complex subunit 1 yes yes 2 0.0027721 67.563 1 0.96239 0.96484 NaN 1 Median 0.96239 0.96484 NaN 1 0 Median NaN NaN NaN 0 0 Median 13834000 6789700 7044600 13834000 6789700 7044600 0 0 0 14295 1913 14682 37991 59667 59667 1 VLLLSSPGLEELYR AEPITADSDPAYSSKVLLLSSPGLEELYRC KVLLLSSPGLEELYRCCMLFVDDMAEPRET K V L Y R C 0 1 0 0 0 0 2 1 0 0 5 0 0 0 1 2 0 0 1 1 0 0 14 0 1587.8872 B3KTJ9;Q8N163;E5RHJ4 B3KTJ9 310 323 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.0007398 70.977 2 1 0.84918 0.81539 29.421 2 Median 0.95795 1.004 NaN 1 0 Median 0.75276 0.66224 NaN 1 0 Median 20419000 7893400 12526000 16795000 5628200 11166000 3624500 2265200 1359300 14296 943 14683 37992;37993;37994 59668;59669;59670;59671;59672 59669 5 VLLPAIK LTSLKKTLATTLAPRVLLPAIKKTYKQIEK LATTLAPRVLLPAIKKTYKQIEKNWKNHMG R V L I K K 1 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 7 0 752.51601 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1821 1827 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.03153 66.994 2 0.94549 1.0645 3.0682 2 Median 0.94549 1.0645 3.0682 2 0 Median NaN NaN NaN 0 0 Median 133440000 71085000 62352000 133440000 71085000 62352000 0 0 0 14297 897 14684 37995;37996 59673;59674;59675 59674 3 VLLPFTR AAGPSAAAAKLNIPKVLLPFTRATRVNFTL AAKLNIPKVLLPFTRATRVNFTLEASEGCY K V L T R A 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 7 0 844.51707 Q8TEM1 Q8TEM1 33 39 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.019511 97.068 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14298 1937 14685 37997 59676 59676 1 VLLPTPPCGALQPGFPLQHDGERDPFTCPGFASQDK RPATVGDSSARPARRVLLPTPPCGALQPGF ERDPFTCPGFASQDKALGSAQYEDPRNLHS R V L D K A 2 1 0 3 2 3 1 4 1 0 4 1 0 3 7 1 2 0 0 1 0 0 36 1 3948.8927 Q9BTC0 Q9BTC0 1658 1693 DIDO1 Death-inducer obliterator 1 yes yes 4 0.053023 4.113 1 1.8449 1.5218 NaN 1 Median NaN NaN NaN 0 0 Median 1.8449 1.5218 NaN 1 0 Median 5326300 1589600 3736800 0 0 0 5326300 1589600 3736800 14299 2002 14686 37998 59677 59677 1 VLLQASQDENFGNTTPR AEVTRTARKQSAQKRVLLQASQDENFGNTT LQASQDENFGNTTPRNQVIPRTPSSFRQPF R V L P R N 1 1 2 1 0 2 1 1 0 0 2 0 0 1 1 1 2 0 0 1 0 0 17 0 1888.9279 P57740;G3V1T4 P57740 32 48 NUP107 Nuclear pore complex protein Nup107 yes no 2 2.4791E-74 190.1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7753900 0 7753900 7753900 0 7753900 0 0 0 14300 1621 14687 37999;38000 59678;59679 59678 2 VLLQEEGTR EKAIKEKEYEIERLRVLLQEEGTRKREYEN EIERLRVLLQEEGTRKREYENELAKVRNHY R V L T R K 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1043.5611 P15924;Q4LE79;B4E2A0 P15924 1176 1184 DSP;DSP variant protein Desmoplakin yes no 2 0.0028813 73.208 1 0.41733 0.45663 NaN 1 Median 0.41733 0.45663 NaN 1 0 Median NaN NaN NaN 0 0 Median 30745000 21852000 8892900 30745000 21852000 8892900 0 0 0 14301 1486 14688 38001 59680 59680 1 VLLSALER LLSEEVELYGETKAKVLLSALERLKHRPDG YGETKAKVLLSALERLKHRPDGKYVVVTGI K V L E R L 1 1 0 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 8 0 899.54402 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 355 362 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0099928 73.26 1 1.6779 1.7993 NaN 1 Median 1.6779 1.7993 NaN 1 0 Median NaN NaN NaN 0 0 Median 25289000 9649900 15639000 25289000 9649900 15639000 0 0 0 14302 196 14689 38002 59681;59682 59681 2 VLLVGADNFTLLGK NELDLACGERIRLEKVLLVGADNFTLLGKP KVLLVGADNFTLLGKPLLGKDLVRVEATVI K V L G K P 1 0 1 1 0 0 0 2 0 0 4 1 0 1 0 0 1 0 0 2 0 0 14 0 1458.8446 A0A024R5G7;F5H7V8;H3BUY0;B4DXI4;Q7Z2W9 A0A024R5G7 48 61 MRPL21 39S ribosomal protein L21, mitochondrial yes no 2 0.00020691 68.355 1 1.2355 1.2468 NaN 1 Median 1.2355 1.2468 NaN 1 0 Median NaN NaN NaN 0 0 Median 8011400 3423400 4588000 8011400 3423400 4588000 0 0 0 14303 180 14690 38003 59683 59683 1 VLLYLLSPR ISSLPSIVNDKYGRKVLLYLLSPRDPAHTV DKYGRKVLLYLLSPRDPAHTVREIIEVLQK K V L P R D 0 1 0 0 0 0 0 0 0 0 4 0 0 0 1 1 0 0 1 1 0 0 9 0 1072.6645 Q15397;B2RDG4 Q15397 441 449 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.0034791 71.692 2 2 0.78924 0.79627 6.3475 4 Linear 0.74729 0.76379 4.1761 2 0 Median 0.85704 0.70722 6.6492 2 0 Median 68349000 37503000 30846000 39326000 22320000 17005000 29023000 15183000 13841000 14304 1761 14691 38004;38005;38006;38007 59684;59685;59686;59687;59688;59689;59690;59691 59684 8 VLMTCVGIGFSNLSK IETKPCGEELKGGDKVLMTCVGIGFSNLSK VLMTCVGIGFSNLSKTLK____________ K V L S K T 0 0 1 0 1 0 0 2 0 1 2 1 1 1 0 2 1 0 0 2 0 0 15 0 1624.8317 Q9Y2P8;Q5VZU3 Q9Y2P8 356 370 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 0.00010459 75.479 3 0.87623 0.9024 15.879 2 Median 0.87623 0.9024 15.879 2 0 Median NaN NaN NaN 0 0 Median 47182000 23391000 23790000 47182000 23391000 23790000 0 0 0 14305 2125 14692 38008;38009;38010 59692;59693;59694;59695;59696;59697 59695 1953 6 VLNMKPPEILSMIEEAAGTR VNNPHFLIMQGRITKVLNMKPPEILSMIEE PPEILSMIEEAAGTRMYEYKKIAAQKTIEK K V L T R M 2 1 1 0 0 0 3 1 0 2 2 1 2 0 2 1 1 0 0 1 0 0 20 1 2198.1439 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q7Z2X1;Q05D74;Q6P712;Q5T821 A0A024R158 153 172 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 8.245E-14 110.6 2 1.9594 2.3265 5.0574 2 Median 1.9594 2.3265 5.0574 2 0 Median NaN NaN NaN 0 0 Median 136230000 44601000 91632000 136230000 44601000 91632000 0 0 0 14306 69 14693 38011;38012 59698;59699;59700;59701 59701 43;44 4 VLNNFISNQK KAHTEKVHVPARPYRVLNNFISNQKMDFKE ARPYRVLNNFISNQKMDFKEDLSGIAEMFK R V L Q K M 0 0 3 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1175.6299 P46013;Q70L73 P46013 736 745 MKI67 Antigen KI-67 no no 2 4.9739E-16 151.44 2 2 2.4455 2.4167 19.635 4 Median 1.7218 2.0137 4.6366 2 0 Median 3.3801 2.8203 0.68266 2 0 Median 650130000 237470000 412660000 557190000 216580000 340610000 92938000 20888000 72050000 14307 1569;1864 14694 38013;38014;38015;38016 59702;59703;59704;59705;59706;59707;59708;59709;59710;59711;59712 59703 11 VLNSYWVGEDSTYK SVAEERAGRHCGALRVLNSYWVGEDSTYKF RVLNSYWVGEDSTYKFFEVILIDPFHKAIR R V L Y K F 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 2 1 1 2 2 0 0 14 0 1659.7781 A0A024R2Q4;P61313;E7EQV9;E7ENU7;E7EX53 A0A024R2Q4 115 128 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 8.1478E-10 122.34 3 2 0.71279 0.82036 14.23 4 Linear 0.68739 0.81167 1.2532 2 0 Median 0.74323 0.6353 2.3925 2 0 Median 1033700000 593950000 439740000 870420000 503530000 366890000 163280000 90423000 72857000 14308 121 14695 38017;38018;38019;38020;38021 59713;59714;59715;59716;59717;59718;59719;59720;59721;59722;59723;59724;59725;59726;59727 59716 15 VLNTNIDGR ______________________________ FQHILRVLNTNIDGRRKIAFAITAIKGVGR R V L G R R 0 1 2 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 9 0 1000.5302 P62269;A0A0G2JQH2;Q5GGW2 P62269 15 23 RPS18 40S ribosomal protein S18 yes no 2 8.3342E-09 149.65 2 2 1.1035 1.3173 32.606 4 Linear 1.0706 1.2465 0.3539 2 0 Median 0.87334 0.71529 10.227 2 0 Median 575470000 278260000 297210000 544410000 261430000 282980000 31055000 16834000 14221000 14309 1639 14696 38022;38023;38024;38025 59728;59729;59730;59731;59732;59733;59734 59732 7 VLNVISLEFSDTR LGDFVKYYYSGKREKVLNVISLEFSDTRLS EKVLNVISLEFSDTRLSNLVETPKIVRKLS K V L T R L 0 1 1 1 0 0 1 0 0 1 2 0 0 1 0 2 1 0 0 2 0 0 13 0 1491.7933 H0Y3N9;Q9UPP1;A0A024R9Y4 H0Y3N9 91 103 PHF8 Histone lysine demethylase PHF8 yes no 2 0.0052574 58.37 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3739200 2611900 1127200 2611900 2611900 0 1127200 0 1127200 14310 1279 14697 38026;38027 59735;59736 59735 2 VLNVTNLEFSDTR LKEFVDYYYSTNRKRVLNVTNLEFSDTRMS KRVLNVTNLEFSDTRMSSFVEPPDIVKKLS R V L T R M 0 1 2 1 0 0 1 0 0 0 2 0 0 1 0 1 2 0 0 2 0 0 13 0 1506.7678 O75151 O75151 189 201 PHF2 Lysine-specific demethylase PHF2 yes yes 2 0.00014979 88.441 2 2 1.4576 1.2591 0.1172 2 Median NaN NaN NaN 0 0 Median 1.4576 1.2591 0.1172 2 0 Median 15851000 3068000 12783000 8993100 0 8993100 6857500 3068000 3789500 14311 1400 14698 38028;38029;38030;38031 59737;59738;59739;59740;59741;59742 59739 6 VLPITVPK PTKILEDVVGVPEKKVLPITVPKSPAFALK VGVPEKKVLPITVPKSPAFALKNRIRMPTK K V L P K S 0 0 0 0 0 0 0 0 0 1 1 1 0 0 2 0 1 0 0 2 0 0 8 0 865.56369 Q643R0;Q9ULW0;B3KM90 Q643R0 478 485 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.022274 57.281 1 0.70757 0.79847 NaN 1 Median 0.70757 0.79847 NaN 1 0 Median NaN NaN NaN 0 0 Median 65751000 37449000 28302000 65751000 37449000 28302000 0 0 0 14312 1837 14699 38032 59743 59743 1 VLPLEALVTDAGEVTEAGK HGLLEELKTVLSSHKVLPLEALVTDAGEVT EALVTDAGEVTEAGKAYVPPRVLQEALCVI K V L G K A 3 0 0 1 0 0 3 2 0 0 3 1 0 0 1 0 2 0 0 3 0 0 19 0 1911.0201 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 617 635 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 1.5866E-81 190.27 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14313 1205 14700 38033;38034 59744;59745 59744 2 VLPPPAGYVPIR LSDEELDAMFPEGYKVLPPPAGYVPIRTPA GYKVLPPPAGYVPIRTPARKLTATPTPLGG K V L I R T 1 1 0 0 0 0 0 1 0 1 1 0 0 0 4 0 0 0 1 2 0 0 12 0 1277.7496 O75533;Q7Z497;A0JLT9;Q32Q20;A0PJH5 O75533 414 425 SF3B1 Splicing factor 3B subunit 1 yes no 2 0.0069789 59.35 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22060000 0 22060000 22060000 0 22060000 0 0 0 14314 1408 14701 38035;38036 59746;59747 59747 2 VLPQLISTITASVQNPALR SMNAMGSLSVLSPDRVLPQLISTITASVQN LISTITASVQNPALRLVTREEFAIMQTPAG R V L L R L 2 1 1 0 0 2 0 0 0 2 3 0 0 0 2 2 2 0 0 2 0 0 19 0 2020.1681 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 738 756 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 3.6849E-12 107.37 2 1.7851 1.8937 12.005 2 Median 1.7851 1.8937 12.005 2 0 Median NaN NaN NaN 0 0 Median 67564000 25348000 42216000 67564000 25348000 42216000 0 0 0 14315 1205 14702 38037;38038 59748;59749;59750;59751;59752 59752 5 VLPSFWIPSLTPEAK QPGPSVGPPSKDKDKVLPSFWIPSLTPEAK VLPSFWIPSLTPEAKATKLEKPWGCGHPRM K V L A K A 1 0 0 0 0 0 1 0 0 1 2 1 0 1 3 2 1 1 0 1 0 0 15 0 1683.9236 A0A075B797;M0R3B2;A8K670;Q9Y314;A0A075B6F9 A0A075B797 138 152 NOSIP Nitric oxide synthase-interacting protein yes no 2 0.00025697 83.182 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6234400 6234400 0 6234400 6234400 0 0 0 0 14316 398 14703 38039;38040;38041 59753;59754;59755 59753 3 VLPSITTEILK LPRIFTSIGEDYDERVLPSITTEILKSVVA YDERVLPSITTEILKSVVARFDAGELITQR R V L L K S 0 0 0 0 0 0 1 0 0 2 2 1 0 0 1 1 2 0 0 1 0 0 11 0 1212.7329 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0 Q6PUJ7 118 128 HEL-S-54e;PHB Prohibitin yes no 2 0.00041586 80.231 2 2 2.0091 1.9925 17.734 4 Median 1.4633 1.7213 0.89237 2 0 Median 2.7884 2.337 2.7602 2 0 Median 795130000 315880000 479250000 694850000 289600000 405250000 100280000 26281000 73999000 14317 730 14704 38042;38043;38044;38045 59756;59757;59758;59759;59760;59761;59762;59763 59756 8 VLPSIVNEVLK LPSMYQRLGLDYEERVLPSIVNEVLKSVVA YEERVLPSIVNEVLKSVVAKFNASQLITQR R V L L K S 0 0 1 0 0 0 1 0 0 1 2 1 0 0 1 1 0 0 0 3 0 0 11 0 1209.7333 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 132 142 PHB2 Prohibitin-2 yes no 2 1.9293E-05 105.2 2 1 1.5847 1.85 11.859 3 Median 1.5781 1.8317 1.4087 2 0 Median 2.7389 2.2477 NaN 1 0 Median 528140000 202020000 326120000 490800000 192090000 298710000 37337000 9924300 27412000 14318 1328 14705 38046;38047;38048 59764;59765;59766;59767;59768 59764 5 VLPTQPNPVDASR LQSLDLEFGSGFQPRVLPTQPNPVDASRAQ PRVLPTQPNPVDASRAQFFLHLSPSHYALL R V L S R A 1 1 1 1 0 1 0 0 0 0 1 0 0 0 3 1 1 0 0 2 0 0 13 0 1392.7361 Q8N766 Q8N766 276 288 EMC1 ER membrane protein complex subunit 1 yes yes 2 0.0024253 69.672 2 0.38608 0.42425 NaN 1 Median 0.38608 0.42425 NaN 1 0 Median NaN NaN NaN 0 0 Median 61261000 30419000 30843000 61261000 30419000 30843000 0 0 0 14319 1913 14706 38049;38050 59769;59770 59769 2 VLPVLHLK EVPGHKNWVVSKFGRVLPVLHLKNQHKLLF VVSKFGRVLPVLHLKNQHKLLFLDLRNIIK R V L L K N 0 0 0 0 0 0 0 0 1 0 3 1 0 0 1 0 0 0 0 2 0 0 8 0 917.60622 A0A024R250;Q76FK4;F8WE42;F5H101;B4DM91;A6H8Z4;Q6AI50;F5GWN9;A0A0A0MSJ1;F5H797;F5H692;Q7Z607 A0A024R250 149 156 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.031924 50.966 1 1.0669 1.0934 NaN 1 Median 1.0669 1.0934 NaN 1 0 Median NaN NaN NaN 0 0 Median 17608000 9225000 8382800 17608000 9225000 8382800 0 0 0 14320 104 14707 38051 59771 59771 1 VLQALEGLK MPSHFSRGSKSVARRVLQALEGLKMVEKDQ KSVARRVLQALEGLKMVEKDQDGGRKLTPQ R V L L K M 1 0 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 969.58588 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 B0ZBD0 103 111 RPS19 40S ribosomal protein S19 yes no 2 0.0011452 89.355 2 2 1.1784 1.3873 23.542 4 Linear 1.198 1.383 3.2566 2 0 Median 1.1753 0.92182 2.5241 2 0 Median 423650000 192180000 231470000 414770000 187840000 226930000 8884600 4339700 4544900 14321 811 14708 38052;38053;38054;38055 59772;59773;59774;59775;59776;59777;59778 59774 7 VLQALGSEPIQYAVPVVK LFISTRLGTDEISPRVLQALGSEPIQYAVP ALGSEPIQYAVPVVKYDRKGYKPRSRQLLL R V L V K Y 2 0 0 0 0 2 1 1 0 1 2 1 0 0 2 1 0 0 1 4 0 0 18 0 1910.0877 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 886 903 MYO1C Unconventional myosin-Ic no no 2 1.3738E-39 158.4 2 2 1.5998 1.4793 13.354 4 Median 1.2114 1.3038 6.6885 2 0 Median 2.0372 1.6252 2.1294 2 0 Median 101160000 46474000 54689000 76067000 37619000 38448000 25096000 8854900 16241000 14322 1088;1189 14709 38056;38057;38058;38059 59779;59780;59781;59782;59783;59784 59781 6 VLQAPPPDVGNGEVPK PLLDLPELPFPELERVLQAPPPDVGNGEVP LQAPPPDVGNGEVPKELVELHLKLMRKIGK R V L P K E 1 0 1 1 0 1 1 2 0 0 1 1 0 0 4 0 0 0 0 3 0 0 16 0 1615.857 Q96T23;H0YER1;Q05DG0;H7C306 Q96T23 50 65 RSF1 Remodeling and spacing factor 1 yes no 2 0.00025817 57.175 1 2 0.97426 0.76046 24.052 3 Median 0.49576 0.50567 NaN 1 0 Median 0.98086 0.7668 1.1738 2 0 Median 32955000 22043000 10912000 25934000 18676000 7258800 7020600 3367600 3652900 14323 1991 14710 38060;38061;38062 59785;59786;59787;59788 59786 4 VLQAQGSSDPEEESVLYSNR GQYAEASALYGRALRVLQAQGSSDPEEESV GSSDPEEESVLYSNRAACHLKDGNCRDCIK R V L N R A 1 1 1 1 0 2 3 1 0 0 2 0 0 0 1 4 0 0 1 2 0 0 20 0 2207.0342 Q15785;Q6ZPD0 Q15785 38 57 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 3.9498E-10 84.468 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14139000 0 14139000 14139000 0 14139000 0 0 0 14324 1765 14711 38063;38064;38065 59789;59790;59791 59791 3 VLQDLVMDILR LDRLIELKEHPAHERVLQDLVMDILRVLST AHERVLQDLVMDILRVLSTPDLEVRKKTLQ R V L L R V 0 1 0 2 0 1 0 0 0 1 3 0 1 0 0 0 0 0 0 2 0 0 11 0 1313.7377 P53618;E9PP73 P53618 317 327 COPB1 Coatomer subunit beta yes no 2 0.0028994 67.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14325 1606 14712 38066 59792 59792 1 VLQDLVPDDRK ELASAELAKEWPKRKVLQDLVPDDRKLKYT PKRKVLQDLVPDDRKLKYTRPGLPTFSQEV K V L R K L 0 1 0 3 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 11 1 1296.7038 G3XAG1;Q96ME7;B4DES6;B7Z9P6;Q658M0;B4E0X7 G3XAG1 366 376 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2;3 0.00070785 79.974 3 0.41218 0.48739 0.69334 2 Median 0.41218 0.48739 0.69334 2 0 Median NaN NaN NaN 0 0 Median 108390000 76649000 31737000 108390000 76649000 31737000 0 0 0 14326 1275 14713 38067;38068;38069 59793;59794;59795 59795 3 VLQEALCVISGVPGLK AGEVTEAGKAYVPPRVLQEALCVISGVPGL LQEALCVISGVPGLKGDVTDTEQLAQEMLI R V L L K G 1 0 0 0 1 1 1 2 0 1 3 1 0 0 1 1 0 0 0 3 0 0 16 0 1681.9437 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 642 657 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 1.9278E-08 94.122 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11674000 0 11674000 11674000 0 11674000 0 0 0 14327 1205 14714 38070;38071 59796;59797 59797 2 VLQHYQESDKGEELGPGNVQK PRLCSGVLGTVVHGKVLQHYQESDKGEELG ESDKGEELGPGNVQKEVSSSFDHVIKETTR K V L Q K E 0 0 1 1 0 3 3 3 1 0 2 2 0 0 1 1 0 0 1 2 0 0 21 1 2354.1503 Q9Y6C9;Q53G34 Q9Y6C9 91 111 MTCH2 Mitochondrial carrier homolog 2 yes no 3 0.0014805 30.587 1 1.4081 1.6084 NaN 1 Median 1.4081 1.6084 NaN 1 0 Median NaN NaN NaN 0 0 Median 14457000 5577100 8880300 14457000 5577100 8880300 0 0 0 14328 2152 14715 38072 59798 59798 1 VLQLFTR LQAHGHDVNSFVRSRVLQLFTRIVQQKALP VNSFVRSRVLQLFTRIVQQKALPLTRFQAV R V L T R I 0 1 0 0 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 7 0 875.52289 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 384 390 NCAPD2 Condensin complex subunit 1 yes no 2 0.010107 124.37 2 2 1.1913 1.1561 11.83 4 Median 0.92562 1.0454 0.95729 2 0 Median 1.5333 1.2823 1.3847 2 0 Median 243580000 118440000 125140000 205550000 103340000 102220000 38021000 15101000 22920000 14329 908 14716 38073;38074;38075;38076 59799;59800;59801;59802;59803;59804;59805;59806 59800 8 VLQLINDNTATALSYGVFR ERRAVLQAARMAGLKVLQLINDNTATALSY INDNTATALSYGVFRRKDINTTAQNIMFYD K V L F R R 2 1 2 1 0 1 0 1 0 1 3 0 0 1 0 1 2 0 1 2 0 0 19 0 2094.111 B7Z766;A0A087X054;B7Z2N4;B3KXH0;Q9Y4L1;E9PJ21;Q05D91;A0A087WWI4;Q6IN67;K7EQK2;J3KTF1;A0A024R3G0 B7Z766 48 66 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.00045503 42.785 2 1.7661 1.7812 35.737 2 Median 1.7661 1.7812 35.737 2 0 Median NaN NaN NaN 0 0 Median 14469000 5068900 9400100 14469000 5068900 9400100 0 0 0 14330 443 14717 38077;38078 59807;59808 59807 1 VLQLLR IRIRGINGVSPKVRKVLQLLRLRQIFNGTF NGVSPKVRKVLQLLRLRQIFNGTFVKLNKA K V L L R L 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 6 0 740.49086 A0A024R814;P18124;A8MUD9;O95036;C9JIJ5;C9JZ88;F2Z2U4;Q59FH1;H0Y4W2;Q9Y4A5 A0A024R814 119 124 RPL7;WUGSC:H_RG054D04.1;TRRAP 60S ribosomal protein L7;Transformation/transcription domain-associated protein no no 2 0.034893 120.78 3 0.95857 1.1235 4.074 2 Median 0.95857 1.1235 4.074 2 0 Median NaN NaN NaN 0 0 Median 642770000 323700000 319070000 642770000 323700000 319070000 0 0 0 14331 240;1253 14718 38079;38080;38081 59809;59810;59811;59812 59812 4 VLQPHPVTPSDTETR PFAWKKKALIIIWAKVLQPHPVTPSDTETR VLQPHPVTPSDTETRWQEDLFFSVGNMIPT K V L T R W 0 1 0 1 0 1 1 0 1 0 1 0 0 0 3 1 3 0 0 2 0 0 15 0 1675.8529 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678;I3L399;E7EN12;B4DZ29;I3L4M4;I3L4A4 Q9HBB9 66 80 GEMIN4 Gem-associated protein 4 yes no 3 1.012E-05 86.497 2 1.6402 1.7304 2.4035 2 Median 1.6402 1.7304 2.4035 2 0 Median NaN NaN NaN 0 0 Median 50651000 19821000 30830000 50651000 19821000 30830000 0 0 0 14332 1940 14719 38082;38083 59813;59814;59815;59816;59817 59814 5 VLQQFADNDVSR PILHGLCTFGFSARRVLQQFADNDVSRFKA ARRVLQQFADNDVSRFKAIKARFAKPVYPG R V L S R F 1 1 1 2 0 2 0 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 12 0 1390.6841 E7EWE5;B4DSD0;B4DDM5;B2R659;A0A0S2Z4J1;P51659;Q59H27;E7EPL9;G5E9S2;B3KSP2;E7ET17;B4DI68 E7EWE5 520 531 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 0.0056521 61.765 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3720800 0 3720800 3720800 0 3720800 0 0 0 14333 563 14720 38084 59818 59818 1 VLQQGHFEDDDPDGFLG IRLGPALKIYEHHIKVLQQGHFEDDDPDGF QQGHFEDDDPDGFLG_______________ K V L L G - 0 0 0 4 0 2 1 3 1 0 2 0 0 2 1 0 0 0 0 1 0 0 17 0 1887.8275 Q6SPF0;E9PIW9 Q6SPF0 522 538 SAMD1 Atherin yes no 2 4.2874E-07 89.266 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97023000 0 0 75254000 0 0 21769000 0 0 14334 1861 14721 38085;38086;38087;38088 59819;59820;59821;59822 59820 4 VLQQTLNYINQGVSHALTWK KVLYQYKEKQYMAPRVLQQTLNYINQGVSH LNYINQGVSHALTWKNLKPHIQGIIQDVIF R V L W K N 1 0 2 0 0 3 0 1 1 1 3 1 0 0 0 1 2 1 1 2 0 0 20 0 2312.2277 O95373;B3KQG6 O95373 321 340 IPO7 Importin-7 yes no 3 0.018711 28.202 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7613300 0 7613300 7613300 0 7613300 0 0 0 14335 1424 14722 38089 59823 59823 1 VLQSEGEAVDPEANVIK KDETNSIKREQETKKVLQSEGEAVDPEANV QSEGEAVDPEANVIKQNSGAATSEETLNDS K V L I K Q 2 0 1 1 0 1 3 1 0 1 1 1 0 0 1 1 0 0 0 3 0 0 17 0 1796.9156 B9EGR5;Q8IWI9;B4DVS1;H3BU53 B9EGR5 1784 1800 MGA MAX gene-associated protein no no 2 4.8221E-09 104.17 4 2 1.7303 1.4621 44.509 3 Median 0.64973 0.6764 NaN 1 0 Median 1.7769 1.4622 0.015398 2 0 Median 19224000 12798000 6426100 15264000 11272000 3992700 3959400 1526000 2433400 14336 1121;1042 14723 38090;38091;38092;38093;38094;38095 59824;59825;59826;59827;59828;59829 59826 6 VLQVSIGPGLPK HQGFGDLAVLKPSNKVLQVSIGPGLPKNSR SNKVLQVSIGPGLPKNSRPTRRNTTQNTGY K V L P K N 0 0 0 0 0 1 0 2 0 1 2 1 0 0 2 1 0 0 0 2 0 0 12 0 1206.7336 Q4KMR3;Q12965 Q4KMR3 915 926 MYO1E Unconventional myosin-Ie yes no 2 0.013411 44.318 1 1.9036 1.5599 NaN 1 Median NaN NaN NaN 0 0 Median 1.9036 1.5599 NaN 1 0 Median 5377500 1549000 3828500 0 0 0 5377500 1549000 3828500 14337 1703 14724 38096 59830 59830 1 VLRPFLLR LNEEETILIIRRLHKVLRPFLLRRLKKEVE IIRRLHKVLRPFLLRRLKKEVEAQLPEKVE K V L L R R 0 2 0 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 8 1 1012.6546 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8;B3KNW7;A0A0U1RQE1;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8;A0A0A0MS59;Q6ZRS2;A0A0C4DFX4;G1UI29;A0A087X0E3;B3KN63 A7E2E1 971 978 SMARCA4;SMARCA2;SRCAP Transcription activator BRG1;Probable global transcription activator SNF2L2;Helicase SRCAP no no 3 0.016989 48.561 2 0.72917 0.81314 12.892 2 Median 0.72917 0.81314 12.892 2 0 Median NaN NaN NaN 0 0 Median 78137000 40690000 37447000 78137000 40690000 37447000 0 0 0 14338 695;1595;476 14725 38097;38098 59831;59832;59833 59832 3 VLSAEALK KKSVKLSLNPKNVNRVLSAEALKPGMLLTG NPKNVNRVLSAEALKPGMLLTGTVSSLEDH R V L L K P 2 0 0 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 8 0 829.49092 Q14690;B4DH82;B4DES7 Q14690 178 185 PDCD11 Protein RRP5 homolog yes no 2 0.012282 67.981 1 1.0711 1.2053 NaN 1 Median 1.0711 1.2053 NaN 1 0 Median NaN NaN NaN 0 0 Median 119290000 59773000 59518000 119290000 59773000 59518000 0 0 0 14339 1741 14726 38099 59834;59835 59834 2 VLSAVVQTLVAK KPHASLSQRLPPPEKVLSAVVQTLVAKEKA PEKVLSAVVQTLVAKEKALRPVDQNTQSKN K V L A K E 2 0 0 0 0 1 0 0 0 0 2 1 0 0 0 1 1 0 0 4 0 0 12 0 1226.7598 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q9H6H8 B2RWP5 2155 2166 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.015684 42.718 1 1 1.1812 1.0936 97.177 2 Median 0.53181 0.55007 NaN 1 0 Median 2.6235 2.174 NaN 1 0 Median 6499300 3343500 3155800 4759700 2910100 1849600 1739700 433390 1306300 14340 898 14727 38100;38101 59836;59837 59837 2 VLSDVDAFIAYVGTDQK MAPVASIWLSQDMHRVLSDVDAFIAYVGTD SDVDAFIAYVGTDQKSCDPGLEDPCGLNRA R V L Q K S 2 0 0 3 0 1 0 1 0 1 1 1 0 1 0 1 1 0 1 3 0 0 17 0 1839.9254 A8K5Y7;Q9HAV4;B3KPQ5;Q9H8N6;B3KNC6 A8K5Y7 688 704 XPO5 Exportin-5 yes no 2 0.0095331 32.068 1 1.1114 0.93035 NaN 1 Median NaN NaN NaN 0 0 Median 1.1114 0.93035 NaN 1 0 Median 1845400 846870 998570 0 0 0 1845400 846870 998570 14341 754 14728 38102 59838 59838 1 VLSEAAISASLEK EELCNSCEMENEVLKVLSEAAISASLEKFE LKVLSEAAISASLEKFEIPVKIRLSPEPWT K V L E K F 3 0 0 0 0 0 2 0 0 1 2 1 0 0 0 3 0 0 0 1 0 0 13 0 1316.7187 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6;Q6PIM8 B3KN05 650 662 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.00024044 68.536 1 2.1082 2.1992 NaN 1 Median 2.1082 2.1992 NaN 1 0 Median NaN NaN NaN 0 0 Median 29849000 9160400 20688000 29849000 9160400 20688000 0 0 0 14342 150 14729 38103 59839 59839 1 VLSGEFQIVNPHLLK NESIEPYTSNIYTRRVLSGEFQIVNPHLLK VLSGEFQIVNPHLLKDLTERGLWHEEMKNQ R V L L K D 0 0 1 0 0 1 1 1 1 1 3 1 0 1 1 1 0 0 0 2 0 0 15 0 1692.9563 B4DNN4;Q53GZ5;P23921;B4E0I8;B4DS95;B4DXD1;E9PL69;B4DXB0 B4DNN4 599 613 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 3 0.00020682 52.484 2 3.8375 4.0235 NaN 1 Median 3.8375 4.0235 NaN 1 0 Median NaN NaN NaN 0 0 Median 38509000 4067800 34442000 38509000 4067800 34442000 0 0 0 14343 1014 14730 38104;38105 59840;59841;59842 59841 3 VLSGTIHAGQPVK MYSTDDGVQFHAFGRVLSGTIHAGQPVKVL GRVLSGTIHAGQPVKVLGENYTLEDEEDSQ R V L V K V 1 0 0 0 0 1 0 2 1 1 1 1 0 0 1 1 1 0 0 2 0 0 13 0 1305.7405 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 447 459 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2;3 2.4826E-06 115.57 4 1 0.93369 1.0496 17.406 4 Linear 0.93281 1.0566 7.1289 3 0 Plateau 0.85848 0.72611 NaN 1 0 Median 211740000 119370000 92375000 209690000 118290000 91396000 2054800 1075800 978990 14344 794 14731 38106;38107;38108;38109;38110 59843;59844;59845;59846;59847;59848 59847 6 VLSHVNSGCQLLPQHQVPAY TASLLREQVAQLKQKVLSHVNSGCQLLPQH NSGCQLLPQHQVPAY_______________ K V L A Y - 1 0 1 0 1 3 0 1 2 0 3 0 0 0 2 2 0 0 1 3 0 0 20 0 2246.1266 P17535 P17535 328 347 JUND Transcription factor jun-D yes yes 3 0.00023859 38.271 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22567000 0 0 18968000 0 0 3598700 0 0 14345 1492 14732 38111;38112;38113 59849;59850;59851;59852 59851 4 VLSIGDGIAR ILGADTSVDLEETGRVLSIGDGIARVHGLR EETGRVLSIGDGIARVHGLRNVQAEEMVEF R V L A R V 1 1 0 1 0 0 0 2 0 2 1 0 0 0 0 1 0 0 0 1 0 0 10 0 999.57129 V9HW26;P25705;K7ERX7;B4DGW3;K7EK77;K7EQH4;K7EJP1 V9HW26 74 83 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.0011713 75.043 2 1 1.4984 1.4957 54.694 3 Plateau 1.4768 1.4708 4.786 2 0 Median 0.64716 0.57138 NaN 1 0 Median 31527000 12932000 18595000 30143000 12227000 17916000 1384300 704560 679710 14346 1518 14733 38114;38115;38116 59853;59854;59855;59856 59855 4 VLSIQSHVIR ______________________________ EEECRVLSIQSHVIRGYVGNRAATFPLQVL R V L I R G 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 2 0 0 0 2 0 0 10 0 1150.6822 A8MV33;G1UI32;V9HWC3;O00764 A8MV33 7 16 PDXK;HEL-S-1a Pyridoxal kinase yes no 3 0.0043611 58.699 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9463300 0 9463300 9463300 0 9463300 0 0 0 14347 797 14734 38117 59857 59857 1 VLSMAPGLTSVEIIPFR PETKKDLYEPTHGGKVLSMAPGLTSVEIIP SMAPGLTSVEIIPFRVAAYNKAKKAMDFYD K V L F R V 1 1 0 0 0 0 1 1 0 2 2 0 1 1 2 2 1 0 0 2 0 0 17 0 1829.0121 Q5TB52;B4DWB5;O95340;Q9UIR2 Q5TB52 535 551 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 3.2921E-07 91.961 2 4.5728 4.6496 NaN 1 Median 4.5728 4.6496 NaN 1 0 Median NaN NaN NaN 0 0 Median 29613000 2339500 27273000 29613000 2339500 27273000 0 0 0 14348 1044 14735 38118;38119 59858;59859 59859 819 2 VLSPFAPDYIQR GQIRVFNHSRDRWLRVLSPFAPDYIQRSLF WLRVLSPFAPDYIQRSLFHRKGINEESCFS R V L Q R S 1 1 0 1 0 1 0 0 0 1 1 0 0 1 2 1 0 0 1 1 0 0 12 0 1404.7402 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 863 874 INOC1;INO80 DNA helicase INO80 yes no 2 0.00088952 64.297 2 2 1.1459 1.051 33.715 4 Median 0.76434 0.77956 2.7555 2 0 Median 1.6523 1.3969 0.74927 2 0 Median 40041000 18061000 21980000 31060000 14938000 16121000 8981800 3123100 5858700 14349 288 14736 38120;38121;38122;38123 59860;59861;59862;59863;59864;59865;59866 59862 7 VLSRPNAQELPSMYQR PTGSKDLQMVNISLRVLSRPNAQELPSMYQ LSRPNAQELPSMYQRLGLDYEERVLPSIVN R V L Q R L 1 2 1 0 0 2 1 0 0 0 2 0 1 0 2 2 0 0 1 1 0 0 16 1 1887.9625 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 108 123 PHB2 Prohibitin-2 yes no 2;3 2.3987E-05 79.837 4 3 2.2721 2.5704 48.496 7 Median 2.2167 3.6326 60.493 4 0 Linear 3.3052 2.8146 32.012 3 0 Median 740580000 224310000 516270000 722170000 218740000 503430000 18408000 5572500 12836000 14350 1328 14737;14738 38124;38125;38126;38127;38128;38129;38130 59867;59868;59869;59870;59871;59872;59873;59874 59870 1005 8 VLSTVHTHSSVK LSLLVLHRLLCEHFRVLSTVHTHSSVKSVP HFRVLSTVHTHSSVKSVPENLLKCFGEQNK R V L V K S 0 0 0 0 0 0 0 0 2 0 1 1 0 0 0 3 2 0 0 3 0 0 12 0 1293.7041 B2R7M3;A0A024QZY1;Q13155;A8MU58;F8W950 B2R7M3 148 159 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 3 0.00024169 65.842 2 1 1.1667 1.035 55.852 2 Median 1.5354 1.5362 NaN 1 0 Median 0.88661 0.69729 NaN 1 0 Median 57568000 12055000 45513000 53579000 9908200 43671000 3989000 2146500 1842500 14351 32 14739 38131;38132;38133 59875;59876;59877 59875 3 VLSVDWTDTGLLLSGGADNK SCKAPLYDLAAHEDKVLSVDWTDTGLLLSG WTDTGLLLSGGADNKLYSYRYSPTTSHVGA K V L N K L 1 0 1 3 0 0 0 3 0 0 4 1 0 0 0 2 2 1 0 2 0 0 20 0 2060.0426 Q53T99;Q9GZL7;B4DRY7 Q53T99 389 408 WDR12 Ribosome biogenesis protein WDR12 yes no 2 6.9073E-20 125.28 2 2 1.0319 1.0106 5.0841 3 Plateau 0.87437 0.96051 5.8719 2 0 Median 1.1939 1.0106 NaN 1 0 Median 182710000 75711000 107000000 95393000 50310000 45083000 87320000 25401000 61919000 14352 1792 14740 38134;38135;38136;38137 59878;59879;59880;59881;59882;59883;59884 59883 7 VLTAEELNAAQTSVAYGCIK LKRSMDKLKEKERDKVLTAEELNAAQTSVA ELNAAQTSVAYGCIKYADLSHNRLNDYIFS K V L I K Y 4 0 1 0 1 1 2 1 0 1 2 1 0 0 0 1 2 0 1 2 0 0 20 0 2137.0725 P54136;B4DXW6 P54136 485 504 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.019866 40.552 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14353 1609 14741 38138 59885 59885 1 VLTDYYR GENPPDGFMAPKAWKVLTDYYRSLEKN___ FMAPKAWKVLTDYYRSLEKN__________ K V L Y R S 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 2 1 0 0 7 0 928.46543 Q5TB52;B4DWB5;O95340;Q9UIR2 Q5TB52 603 609 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 0.031834 73.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16889000 0 16889000 16889000 0 16889000 0 0 0 14354 1044 14742 38139 59886 59886 1 VLTELLEQERK PWPLNEAQVQASVVKVLTELLEQERKKVVD SVVKVLTELLEQERKKVVDTTKESSRKGWE K V L R K K 0 1 0 0 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 11 1 1356.7613 E7ETY2;B4DRA2;Q13428 Q13428 1318 1328 TCOF1 Treacle protein no no 3 0.034267 28.806 1 0.8404 0.93228 NaN 1 Median 0.8404 0.93228 NaN 1 0 Median NaN NaN NaN 0 0 Median 10077000 6575400 3502000 10077000 6575400 3502000 0 0 0 14355 1712;1225 14743 38140 59887 59887 0 VLTFDLTK LIGVYPEQGDCVISKVLTFDLTKYPDANPN GDCVISKVLTFDLTKYPDANPNPNEQ____ K V L T K Y 0 0 0 1 0 0 0 0 0 0 2 1 0 1 0 0 2 0 0 1 0 0 8 0 935.53278 Q14683;G8JLG1 Q14683 1215 1222 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0099928 73.26 2 0.92194 0.95429 2.0209 2 Median 0.92194 0.95429 2.0209 2 0 Median NaN NaN NaN 0 0 Median 44342000 21342000 23000000 44342000 21342000 23000000 0 0 0 14356 1739 14744 38141;38142 59888;59889 59889 2 VLTFLR VHEVFSRNHAAPFSKVLTFLRRGPFELEAF RNHAAPFSKVLTFLRRGPFELEAFYSDPQG K V L L R R 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 6 0 747.46431 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72;Q8TDX9 A0A024RDQ0 431 436 HSPH1;PKD1L1 Heat shock protein 105 kDa;Polycystic kidney disease protein 1-like 1 yes no 2 0.036923 87.839 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14357 390 14745 38143 59890 59890 1 VLTIDPTEFK KGNNVYCLDRECRPRVLTIDPTEFKFKLAL ECRPRVLTIDPTEFKFKLALINRKYDEVLH R V L F K F 0 0 0 1 0 0 1 0 0 1 1 1 0 1 1 0 2 0 0 1 0 0 10 0 1161.6281 P53621 P53621 589 598 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0025843 79.906 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17713000 0 17713000 17713000 0 17713000 0 0 0 14358 1607 14746 38144 59891 59891 1 VLTISTLR PAGEFKWNGSVHGSKVLTISTLRLTITQLE GSVHGSKVLTISTLRLTITQLENNIPSSFL K V L L R L 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 2 0 0 1 0 0 8 0 901.55967 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 761 768 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.014493 62.88 2 1.2412 1.3375 NaN 1 Median 1.2412 1.3375 NaN 1 0 Median NaN NaN NaN 0 0 Median 25966000 12630000 13336000 25966000 12630000 13336000 0 0 0 14359 1224 14747 38145;38146 59892;59893 59893 2 VLTPELYAELR DEFPDLSAHNNHMAKVLTPELYAELRAKST HMAKVLTPELYAELRAKSTPSGFTLDDVIQ K V L L R A 1 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 1 0 1 1 0 0 11 0 1302.7184 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;G3V4N7;G3V461 V9HWH2 33 43 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 0.00040176 81.338 3 4.9247 5.1478 NaN 1 Median 4.9247 5.1478 NaN 1 0 Median NaN NaN NaN 0 0 Median 39179000 3579000 35600000 39179000 3579000 35600000 0 0 0 14360 557 14748 38147;38148;38149 59894;59895;59896;59897 59897 4 VLTQEDFQK MEERKAKAAAISTSRVLTQEDFQKIRMAQM AISTSRVLTQEDFQKIRMAQMRKELDAAPG R V L Q K I 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 0 1106.5608 E7EW05;B4DT66;Q9NVU7 E7EW05 513 521 SDAD1 Protein SDA1 homolog yes no 2 0.024384 48.283 1 0.79241 0.64798 NaN 1 Median NaN NaN NaN 0 0 Median 0.79241 0.64798 NaN 1 0 Median 1873800 1116200 757610 0 0 0 1873800 1116200 757610 14361 1032 14749 38150 59898 59898 1 VLTSGIFETK QADYVPSDQDLLRCRVLTSGIFETKFQVDK LLRCRVLTSGIFETKFQVDKVNFHMFDVGG R V L T K F 0 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 2 0 0 1 0 0 10 0 1093.6019 Q5FWY2;A0A0S2Z3S5;A0A0S2Z3H8;P63092;Q5JWF2;B0AZR9;Q14455;S4R3E3 Q5FWY2 188 197 GNAS;GSA Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 2 0.002232 70.028 1 1.6823 1.7084 NaN 1 Median 1.6823 1.7084 NaN 1 0 Median NaN NaN NaN 0 0 Median 13635000 5611700 8022800 13635000 5611700 8022800 0 0 0 14362 549 14750 38151 59899 59899 1 VLTVINQTQK SKLSKIRVVRKSIARVLTVINQTQKENLRK KSIARVLTVINQTQKENLRKFYKGKKYKPL R V L Q K E 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 2 0 0 2 0 0 10 0 1142.6659 P42766;F2Z388;A0A024R866 P42766 57 66 RPL35 60S ribosomal protein L35 yes no 2 5.1171E-65 215.88 4 2 0.5944 0.69177 18.328 5 Linear 0.58697 0.7043 24.094 3 0 Plateau 0.60771 0.53311 2.4419 2 0 Median 5435300000 3484800000 1950500000 4812700000 3099000000 1713700000 622650000 385830000 236820000 14363 1567 14751 38152;38153;38154;38155;38156;38157 59900;59901;59902;59903;59904;59905;59906;59907;59908;59909;59910;59911;59912;59913;59914;59915;59916;59917;59918;59919;59920;59921 59902 22 VLVAQHDVYK DKVAQDLCKVAGIAKVLVAQHDVYKGLLPE AGIAKVLVAQHDVYKGLLPEELTPLILATQ K V L Y K G 1 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 0 1 3 0 0 10 0 1170.6397 A0A0S2Z3L0;P13804;A0A0S2Z3M4;H0YL12;H0YKF0;H0YLU7 A0A0S2Z3L0 76 85 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.0011608 87.476 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11535000 0 11535000 11535000 0 11535000 0 0 0 14364 553 14752 38158 59922 59922 1 VLVATNVAAR QREITLKGFREGSFKVLVATNVAARGLDIP EGSFKVLVATNVAARGLDIPEVDLVIQSSP K V L A R G 3 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 10 0 1012.6029 B4DW97;A0A087WVC1;Q9BQ39;B4DED6;K0J110;Q9NTA9 B4DW97 441 450 DDX50;mcdrh;DKFZp761E0323 ATP-dependent RNA helicase DDX50 yes no 2 0.00051176 85.676 2 1.4869 1.4812 NaN 1 Median 1.4869 1.4812 NaN 1 0 Median NaN NaN NaN 0 0 Median 24177000 14577000 9599300 24177000 14577000 9599300 0 0 0 14365 416 14753 38159;38160 59923;59924 59924 2 VLVDQTTGLSR VEDMFSRFGRIINSRVLVDQTTGLSRGVAF INSRVLVDQTTGLSRGVAFIRFDKRSEAEE R V L S R G 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 1 2 0 0 2 0 0 11 0 1187.651 Q15717 Q15717 137 147 ELAVL1 ELAV-like protein 1 yes yes 2 6.4195E-13 147.75 2 2 1.4228 1.4279 47.372 2 Median 1.7215 1.996 NaN 1 0 Median 1.1759 1.0214 NaN 1 0 Median 100230000 25028000 75198000 97047000 23066000 73981000 3178100 1961200 1216900 14366 1764 14754 38161;38162;38163;38164 59925;59926;59927;59928;59929;59930 59927 6 VLVDSSFGQPTTQGEAR WRLVFLVKNFPVGQRVLVDSSFGQPTTQGE VDSSFGQPTTQGEARREEATRQGELPLVKE R V L A R R 1 1 0 1 0 2 1 2 0 0 1 0 0 1 1 2 2 0 0 2 0 0 17 0 1790.8799 D3DWL9;Q10570 D3DWL9 739 755 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 2 0.00057531 57.802 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14367 1198 14755 38165 59931 59931 1 VLVEGPLNNLR QPLWNHLLNYYKEQKVLVEGPLNNLRESLM KEQKVLVEGPLNNLRESLMQFSKPRKLVNT K V L L R E 0 1 2 0 0 0 1 1 0 0 3 0 0 0 1 0 0 0 0 2 0 0 11 0 1222.7034 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 897 907 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.014335 46.891 1 2.2859 2.3825 NaN 1 Median 2.2859 2.3825 NaN 1 0 Median NaN NaN NaN 0 0 Median 22321000 7623300 14697000 22321000 7623300 14697000 0 0 0 14368 231 14756 38166 59932 59932 1 VLVEITDVDFAALK EPSGWRAVWHTNVFKVLVEITDVDFAALKA KVLVEITDVDFAALKAVVRLAEPYLCDSQV K V L L K A 2 0 0 2 0 0 1 0 0 1 2 1 0 1 0 0 1 0 0 3 0 0 14 0 1531.8498 B2RDX0;A8K7Z9;A0A024R6R1;Q8NEM2 B2RDX0 126 139 SHCBP1 SHC SH2 domain-binding protein 1 yes no 2 0.0028022 59.542 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3878600 0 3878600 3878600 0 3878600 0 0 0 14369 207 14757 38167;38168 59933;59934 59933 2 VLVHPPQDGEDEPTLVQK YMSPMEAQEFGILDKVLVHPPQDGEDEPTL HPPQDGEDEPTLVQKEPVEAAPAAEPVPAS K V L Q K E 0 0 0 2 0 2 2 1 1 0 2 1 0 0 3 0 1 0 0 3 0 0 18 0 2000.0215 M0R208;Q16740 M0R208 157 174 CLPP ATP-dependent Clp protease proteolytic subunit;ATP-dependent Clp protease proteolytic subunit, mitochondrial yes no 3 1.1582E-05 61.815 2 2.7768 2.8315 0.36646 2 Median 2.7768 2.8315 0.36646 2 0 Median NaN NaN NaN 0 0 Median 25526000 5649400 19877000 25526000 5649400 19877000 0 0 0 14370 1356 14758 38169;38170 59935;59936 59935 2 VLVIGELGVGK AAAAPAPETREHLSKVLVIGELGVGKTSII HLSKVLVIGELGVGKTSIIKRYVHQLFSQH K V L G K T 0 0 0 0 0 0 1 3 0 1 2 1 0 0 0 0 0 0 0 3 0 0 11 0 1082.6699 B2R5I8;Q13637 B2R5I8 28 38 RAB32 Ras-related protein Rab-32 yes no 2 0.0054128 56.258 2 2.248 2.3243 NaN 1 Median 2.248 2.3243 NaN 1 0 Median NaN NaN NaN 0 0 Median 11095000 1482400 9612500 11095000 1482400 9612500 0 0 0 14371 833 14759 38171;38172 59937;59938 59938 2 VLVLAPTR LQRNQETIKKSRSPKVLVLAPTRELANQVA KKSRSPKVLVLAPTRELANQVAKDFKDITR K V L T R E 1 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 8 0 867.55419 B4DW97;A0A087WVC1;Q9BQ39;B4DED6;K0J110 B4DW97 214 221 DDX50;mcdrh ATP-dependent RNA helicase DDX50 yes no 2 0.0050709 91.626 2 1.1309 1.196 9.5726 2 Median 1.1309 1.196 9.5726 2 0 Median NaN NaN NaN 0 0 Median 62602000 29173000 33429000 62602000 29173000 33429000 0 0 0 14372 416 14760 38173;38174 59939;59940;59941 59941 3 VLVLSQDYGK FQEMLYIMDWMDEMKVLVLSQDYGKHLLGV MDEMKVLVLSQDYGKHLLGVEDLLQKHTLV K V L G K H 0 0 0 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 1 2 0 0 10 0 1120.6128 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1 D6W5C0 463 472 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.010142 53.756 1 1.3284 1.3344 NaN 1 Median 1.3284 1.3344 NaN 1 0 Median NaN NaN NaN 0 0 Median 13668000 6369900 7298100 13668000 6369900 7298100 0 0 0 14373 415 14761 38175 59942;59943 59943 2 VLVLVPTR LERLIYKPRQAPVTRVLVLVPTRELGIQVH RQAPVTRVLVLVPTRELGIQVHSVTRQLAQ R V L T R E 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 3 0 0 8 0 895.58549 B3GQE6;A0A087X059;B7Z6D5;Q96GQ7 B3GQE6 261 268 DDX27 Probable ATP-dependent RNA helicase DDX27 no no 2 0.0050709 91.626 2 2 0.91369 0.87959 4.7114 4 Median 0.79845 0.90868 3.413 2 0 Median 1.0443 0.85108 3.4709 2 0 Median 268090000 145530000 122550000 241250000 132350000 108890000 26840000 13179000 13661000 14374 899;1099 14762 38176;38177;38178;38179 59944;59945;59946;59947;59948;59949 59947 6 VLVPATDR CGNYSGAAEYLYFFRVLVPATDRNALSSLW EYLYFFRVLVPATDRNALSSLWGKLASEIL R V L D R N 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 8 0 869.49707 E5RGA2;B3KW56;Q6IAX5;B2R806;P60228 E5RGA2 63 70 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.042516 57.047 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14375 857 14763 38180 59950 59950 1 VLVPGIPGHHAAIK AITKVRTPVMNSEAKVLVPGIPGHHAAIKP KVLVPGIPGHHAAIKPAPPQTEQVESKRKS K V L I K P 2 0 0 0 0 0 0 2 2 2 1 1 0 0 2 0 0 0 0 2 0 0 14 0 1407.8351 Q15061 Q15061 403 416 WDR43 WD repeat-containing protein 43 yes yes 3 0.014685 26.124 2 1.188 0.95931 0.065361 2 Median NaN NaN NaN 0 0 Median 1.188 0.95931 0.065361 2 0 Median 20181000 9893300 10288000 0 0 0 20181000 9893300 10288000 14376 1752 14764 38181;38182 59951;59952;59953 59952 3 VLVQHCPAR QAITASSANLRHSPRVLVQHCPARTPQRGD LRHSPRVLVQHCPARTPQRGDEEGLGGEEE R V L A R T 1 1 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 0 0 2 0 0 9 0 1078.5706 I3VM54;I3VM53;Q9Y2K7 I3VM54 818 826 KDM2A Lysine-specific demethylase 2A yes no 3 0.0011654 60.436 1 0.66065 0.66603 NaN 1 Median 0.66065 0.66603 NaN 1 0 Median NaN NaN NaN 0 0 Median 6366600 3033400 3333200 6366600 3033400 3333200 0 0 0 14377 1323 14765 38183 59954;59955 59954 2 VLVSGLPPSGSWQDLK RGGRNGPPTRRSDFRVLVSGLPPSGSWQDL LVSGLPPSGSWQDLKDHMREAGDVCYADVQ R V L L K D 0 0 0 1 0 1 0 2 0 0 3 1 0 0 2 3 0 1 0 2 0 0 16 0 1681.9039 Q13242;A8K3M9 Q13242 113 128 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.00041056 62.924 1 1.8369 1.8035 NaN 1 Median 1.8369 1.8035 NaN 1 0 Median NaN NaN NaN 0 0 Median 20371000 8494700 11876000 20371000 8494700 11876000 0 0 0 14378 1709 14766 38184 59956;59957 59956 2 VLVTGATGLLGR PEDMEQEEVNIPNRRVLVTGATGLLGRAVH NRRVLVTGATGLLGRAVHKEFQQNNWHAVG R V L G R A 1 1 0 0 0 0 0 3 0 0 3 0 0 0 0 0 2 0 0 2 0 0 12 0 1155.6976 A8K7A4;A0A140VJP2;Q9NZL9;E5RJR3 A8K7A4 20 31 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 2 0.0050293 77.662 1 1.8966 1.8742 NaN 1 Median 1.8966 1.8742 NaN 1 0 Median NaN NaN NaN 0 0 Median 15090000 4472400 10618000 15090000 4472400 10618000 0 0 0 14379 605 14767 38185 59958 59958 0 VLVTVPLALLQK VQVTTTDGTGYSAQKVLVTVPLALLQKGAI AQKVLVTVPLALLQKGAIQFNPPLSEKKMK K V L Q K G 1 0 0 0 0 1 0 0 0 0 4 1 0 0 1 0 1 0 0 3 0 0 12 0 1292.8432 H0Y6H0;Q8NB78 H0Y6H0 441 452 KDM1B Lysine-specific histone demethylase 1B yes no 2 0.0028278 57.598 1 0.78893 0.79869 NaN 1 Median 0.78893 0.79869 NaN 1 0 Median NaN NaN NaN 0 0 Median 5314100 2915400 2398700 5314100 2915400 2398700 0 0 0 14380 1285 14768 38186 59959 59959 1 VLVVGAGGIGCELLK RGLPRELAEAVAGGRVLVVGAGGIGCELLK VLVVGAGGIGCELLKNLVLTGFSHIDLIDL R V L L K N 1 0 0 0 1 0 1 4 0 1 3 1 0 0 0 0 0 0 0 3 0 0 15 0 1483.8432 B3KMZ6;B2RDF5;Q9UBT2;U3KQ55;K7ES38;K7EPL2 B3KMZ6 20 34 UBA2 SUMO-activating enzyme subunit 2 yes no 2 0.0013515 48.004 1 1.8126 1.8322 NaN 1 Median 1.8126 1.8322 NaN 1 0 Median NaN NaN NaN 0 0 Median 8675000 4253000 4422000 8675000 4253000 4422000 0 0 0 14381 887 14769 38187 59960 59960 1 VLVVHDGFEGLAK AVRSTVRIGLIQGNRVLVVHDGFEGLAKGQ NRVLVVHDGFEGLAKGQIEEAGWSYVGGWT R V L A K G 1 0 0 1 0 0 1 2 1 0 2 1 0 1 0 0 0 0 0 3 0 0 13 0 1382.7558 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9;F8VP00;P78457 A0A024R0Y5 433 445 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2;3 0.015917 50.292 2 2.7541 2.8043 NaN 1 Median 2.7541 2.8043 NaN 1 0 Median NaN NaN NaN 0 0 Median 28033000 8693100 19340000 28033000 8693100 19340000 0 0 0 14382 61 14770 38188;38189 59961;59962 59962 2 VLVWDLR SVSGDRLIVGTAGRRVLVWDLRNMGYVQQR IVGTAGRRVLVWDLRNMGYVQQRRESSLKY R V L L R N 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 2 0 0 7 0 899.52289 J3QT28;A0A140VJF3;O43684;B4DDM6 J3QT28 159 165 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.026774 78.616 2 0.84175 0.90332 9.6556 2 Median 0.84175 0.90332 9.6556 2 0 Median NaN NaN NaN 0 0 Median 42568000 22394000 20173000 42568000 22394000 20173000 0 0 0 14383 600 14771 38190;38191 59963;59964;59965;59966 59963 4 VLVYNNTSIVQDEILAHR RRILLAEVPTMAVEKVLVYNNTSIVQDEIL YNNTSIVQDEILAHRLGLIPIHADPRLFEY K V L H R L 1 1 2 1 0 1 1 0 1 2 2 0 0 0 0 1 1 0 1 3 0 0 18 0 2083.1062 Q96HT3;O15160;D6RDJ3;H0Y723;B4DEC2;E7EQB9 Q96HT3 84 101 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 3 3.2023E-08 89.261 2 2 1.1808 1.0923 30.172 4 Median 1.3292 1.3979 7.4985 2 0 Median 0.99466 0.84094 9.6068 2 0 Median 56692000 27702000 28990000 47294000 23678000 23616000 9397800 4024200 5373600 14384 1376 14772 38192;38193;38194;38195 59967;59968;59969;59970;59971;59972 59969 6 VLYAYGYYTGEPSK PRIASGLGLAWIVGRVLYAYGYYTGEPSKR RVLYAYGYYTGEPSKRSRGALGSIALLGLV R V L S K R 1 0 0 0 0 0 1 2 0 0 1 1 0 0 1 1 1 0 4 1 0 0 14 0 1609.7664 Q53GB9;A0A024R8Z1;Q5VV89;O14880 Q53GB9 98 111 MGST3 Microsomal glutathione S-transferase 3 yes no 2 1.0475E-06 109.6 3 2 2.0188 1.9315 42.257 4 Median 2.4376 2.7405 2.5385 2 0 Median 1.6414 1.3227 6.6021 2 0 Median 200430000 62209000 138220000 181510000 54797000 126710000 18921000 7411900 11509000 14385 265 14773 38196;38197;38198;38199;38200 59973;59974;59975;59976;59977;59978;59979;59980 59977 8 VLYDAEISQIHQSVTDTNVILSMDNSR QSKVDLLNQEIEFLKVLYDAEISQIHQSVT SVTDTNVILSMDNSRNLDLDSIIAEVKAQY K V L S R N 1 1 2 3 0 2 1 0 1 3 2 0 1 0 0 4 2 0 1 3 0 0 27 0 3047.487 CON__P35908;P35908 CON__P35908 321 347 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 3 1.9703E-06 51.963 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37346000 37346000 0 37346000 37346000 0 0 0 0 + 14386 1166 14774 38201 59981 59981 888 1 VLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR ILGGVDQIHIKPGAKVLYLGAASGTTVSHV VGPDGLVYAVEFSHRSGRDLINLAKKRTNI K V L H R S 3 1 0 2 0 0 1 4 2 1 3 0 0 1 1 4 2 0 2 6 0 0 33 0 3415.7412 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1 Q96BS4 102 134 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3;4 3.5889E-26 78.909 4 0.88222 0.76205 1.0725 4 Median NaN NaN NaN 0 0 Median 0.88222 0.76205 1.0725 4 0 Median 463760000 238780000 224980000 0 0 0 463760000 238780000 224980000 14387 1506 14775 38202;38203;38204;38205 59982;59983;59984;59985;59986 59982 5 VLYLLSQLQQSQMAEK LQAELVRMEQQHQEKVLYLLSQLQQSQMAE LYLLSQLQQSQMAEKQLEESVSEKEQQLLS K V L E K Q 1 0 0 0 0 4 1 0 0 0 4 1 1 0 0 2 0 0 1 1 0 0 16 0 1877.9921 Q59HG1;O95239;B3KNC0 Q59HG1 934 949 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 8.6539E-25 138.24 2 3 1.1355 1.2587 29.931 5 Median 1.0564 1.153 12.402 2 0 Median 1.9067 1.5608 41.085 3 0 Median 110410000 51123000 59283000 86324000 40318000 46007000 24081000 10805000 13276000 14388 1803 14776;14777 38206;38207;38208;38209;38210 59987;59988;59989;59990;59991;59992;59993;59994;59995;59996 59988 1670 10 VLYLPSFFTYAK EPMPPTLGTNVLGRKVLYLPSFFTYAKYIV GRKVLYLPSFFTYAKYIVQVDGKIGLFRGL K V L A K Y 1 0 0 0 0 0 0 0 0 0 2 1 0 2 1 1 1 0 2 1 0 0 12 0 1447.7751 A8YXX5;Q9Y374;A4FVA6;A0A024RD08;A0A024RCX4;H0Y8C3;Q8IW90;Q9NZJ7 A8YXX5 108 119 PIG60;MTCH1 Mitochondrial carrier homolog 1 yes no 2 0.0047147 52.79 2 1.3889 1.3961 9.4158 2 Median 1.3889 1.3961 9.4158 2 0 Median NaN NaN NaN 0 0 Median 10790000 4983200 5806500 10790000 4983200 5806500 0 0 0 14389 373 14778 38211;38212 59997;59998 59998 2 VLYVYDMLAGK SANGEEVLATSTHSKVLYVYDMLAGKLIPV THSKVLYVYDMLAGKLIPVHQVRGLKEKIV K V L G K L 1 0 0 1 0 0 0 1 0 0 2 1 1 0 0 0 0 0 2 2 0 0 11 0 1270.6631 B2RAX6;Q9Y5J1;J3KSR7 B2RAX6 295 305 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 0.00017689 84.213 2 2 1.2988 1.4516 18.411 4 Linear 1.2998 1.399 8.9699 2 0 Median 1.2908 1.0336 4.4904 2 0 Median 84224000 35849000 48375000 75447000 32127000 43319000 8777900 3721900 5056000 14390 876 14779;14780 38213;38214;38215;38216 59999;60000;60001;60002;60003;60004 60001 684 6 VMEGTVAAQDEFYR TSDADGLCTRLIKPKVMEGTVAAQDEFYRS KVMEGTVAAQDEFYRSGWALNMKELKLLQT K V M Y R S 2 1 0 1 0 1 2 1 0 0 0 0 1 1 0 0 1 0 1 2 0 0 14 0 1614.7348 B4DMZ0;Q53EL3;B5BU52;B2R6Q4;A8K3B6;P41240;B4DP99 B4DMZ0 93 106 CSK Non-specific protein-tyrosine kinase;Tyrosine-protein kinase CSK yes no 2 0.00034475 79.82 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14391 720 14781 38217 60005 60005 555 1 VMEIVDADEK ASITSEVFNKFFKERVMEIVDADEKVRHSK FFKERVMEIVDADEKVRHSKLAESVEKAIE R V M E K V 1 0 0 2 0 0 2 0 0 1 0 1 1 0 0 0 0 0 0 2 0 0 10 0 1147.5431 Q9Y5B9;Q0VGA3 Q9Y5B9 202 211 SUPT16H FACT complex subunit SPT16 yes no 2 0.00041929 79.974 4 4 1.0663 0.999 41.277 4 Median 1.3004 1.4186 2.4785 2 0 Median 0.8691 0.69514 4.1743 2 0 Median 99015000 45718000 53296000 85704000 37647000 48057000 13311000 8071100 5239700 14392 2148 14782;14783 38218;38219;38220;38221;38222;38223;38224;38225 60006;60007;60008;60009;60010;60011;60012;60013;60014;60015;60016;60017 60009 1989 12 VMENSSGTPDILTR MSRSNVQPTAAPGQKVMENSSGTPDILTRH KVMENSSGTPDILTRHFTIDDFEIGRPLGK K V M T R H 0 1 1 1 0 0 1 1 0 1 1 0 1 0 1 2 2 0 0 1 0 0 14 0 1518.7348 Q96GD4;J3KTD6;J3QLN8;J3QR41;J3KRF8;J3KRJ2 Q96GD4 57 70 AURKB Aurora kinase B yes no 2 1.4937E-57 192.68 2 3 1.3189 1.4911 27.843 5 Median 1.2774 1.4506 3.8941 2 0 Median 2.4682 2.0778 37.419 3 0 Median 255980000 113790000 142190000 226900000 102790000 124110000 29081000 10999000 18082000 14393 1967 14784;14785 38226;38227;38228;38229;38230 60018;60019;60020;60021;60022;60023;60024;60025;60026;60027 60022 1814 10 VMEPDPNSENIAAISQSSVGSDLFVFKPSEPR LLSCALEWNAKLNVRVMEPDPNSENIAAIS SVGSDLFVFKPSEPRPLYIQKGISREKVQW R V M P R P 2 1 2 2 0 1 3 1 0 2 1 1 1 2 4 6 0 0 0 3 0 0 32 1 3446.6664 A8K330;Q8IWA0 A8K330 585 616 WDR75 WD repeat-containing protein 75 yes no 3 5.3706E-10 49.486 1 1.0396 1.223 NaN 1 Median 1.0396 1.223 NaN 1 0 Median NaN NaN NaN 0 0 Median 33783000 14642000 19141000 33783000 14642000 19141000 0 0 0 14394 716 14786 38231 60028 60028 553 1 VMEPDPNSENIAAISQSSVGSDLFVFKPSEPRPLYIQK LLSCALEWNAKLNVRVMEPDPNSENIAAIS FVFKPSEPRPLYIQKGISREKVQWGVFVPR R V M Q K G 2 1 2 2 0 2 3 1 0 3 2 2 1 2 5 6 0 0 1 3 0 0 38 2 4189.1042 A8K330;Q8IWA0 A8K330 585 622 WDR75 WD repeat-containing protein 75 yes no 4 6.7276E-21 63.761 3 0.99447 1.0302 26.637 3 Median NaN NaN NaN 0 0 Median 0.99447 1.0302 26.637 3 0 Median 28859000 14087000 14772000 0 0 0 28859000 14087000 14772000 14395 716 14787;14788 38232;38233;38234 60029;60030;60031 60030 553 2 VMEPLTASR CTGRNIRQLSLDVRRVMEPLTASRLQVRKK SLDVRRVMEPLTASRLQVRKKNSLKDCVAV R V M S R L 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 9 0 1002.5168 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55 A0A0A6YYI3 53 61 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.00088164 80.438 2 1 1.3918 1.4833 9.0581 3 Plateau 1.3818 1.4833 8.5527 2 0 Median 1.5233 1.3198 NaN 1 0 Median 77202000 32510000 44692000 75202000 31645000 43558000 1999300 865090 1134200 14396 493 14789;14790 38235;38236;38237 60032;60033;60034;60035 60033 342 4 VMEQQSNLQPEAK VTFKEESKFELSGSKVMEQQSNLQPEAKEK SKVMEQQSNLQPEAKEKECGDSLEKDRERW K V M A K E 1 0 1 0 0 3 2 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 13 0 1500.7242 B9EGR5;Q8IWI9;B4DVS1;H3BU53 B9EGR5 1938 1950 MGA MAX gene-associated protein no no 2 0.011819 44.543 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14397 1121;1042 14791 38238 60036 60036 816 1 VMFENPDFQVDEESEEFR KVKSLPNILTDDRFKVMFENPDFQVDEESE ENPDFQVDEESEEFRLLNPLVSKISEKRKK K V M F R L 0 1 1 2 0 1 5 0 0 0 0 0 1 3 1 1 0 0 0 2 0 0 18 0 2245.9474 Q9BSC4;B4DS83 Q9BSC4 487 504 NOL10 Nucleolar protein 10 yes no 2 6.8475E-09 98.592 2 2 1.3005 1.4298 26.489 4 Median 1.3005 1.4298 4.2279 2 0 Median 1.4706 1.2191 42.813 2 0 Median 107620000 49745000 57871000 91293000 43036000 48256000 16323000 6708800 9614200 14398 2000 14792;14793 38239;38240;38241;38242 60037;60038;60039;60040;60041;60042;60043;60044 60040 1840 8 VMFHSFVSK TLQLIKVQEGVGEGKVMFHSFVSKTEEELQ GVGEGKVMFHSFVSKTEEELQAILEAKEKK K V M S K T 0 0 0 0 0 0 0 0 1 0 0 1 1 2 0 2 0 0 0 2 0 0 9 0 1080.5426 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 295 303 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 3 0.0176 48.091 1 1.1224 1.1813 NaN 1 Median 1.1224 1.1813 NaN 1 0 Median NaN NaN NaN 0 0 Median 23865000 10636000 13228000 23865000 10636000 13228000 0 0 0 14399 493 14794 38243 60045 60045 343 0 VMGTFSTVTSTVK AVQLWESVANKLEGKVMGTFSTVTSTVKQA GKVMGTFSTVTSTVKQALQESLVQILQPQR K V M V K Q 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 2 4 0 0 3 0 0 13 0 1356.6959 Q6IAX9;P08240;A0A024R3M0 Q6IAX9 374 386 SRPR Signal recognition particle receptor subunit alpha yes no 2 0.0018161 56.225 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18876000 0 18876000 18876000 0 18876000 0 0 0 14400 1455 14795 38244 60046 60046 1167 1 VMLLQQGLNDR LAEKVHMRAMSIAQRVMLLQQGLNDRSDAV IAQRVMLLQQGLNDRSDAVKQAMQKHLLQG R V M D R S 0 1 1 1 0 2 0 1 0 0 3 0 1 0 0 0 0 0 0 1 0 0 11 0 1285.6813 Q9BPX3;Q6NUR1 Q9BPX3 247 257 NCAPG Condensin complex subunit 3 yes no 2 3.4954E-13 147.4 3 4 1.0957 1.1918 18.557 6 Median 1.0392 1.1918 0.70867 2 0 Median 1.3125 1.093 23.469 4 0 Median 360180000 185880000 174300000 313660000 165260000 148400000 46524000 20620000 25904000 14401 1995 14796;14797 38245;38246;38247;38248;38249;38250;38251 60047;60048;60049;60050;60051;60052;60053;60054;60055;60056;60057;60058 60051 1829 12 VMLYPSR FRSNLPAKAIGHRIRVMLYPSRI_______ KAIGHRIRVMLYPSRI______________ R V M S R I 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 7 0 864.45276 P18077 P18077 103 109 RPL35A 60S ribosomal protein L35a yes yes 2 0.013101 86.086 2 1.3615 1.5882 3.0116 2 Median 1.3615 1.5882 3.0116 2 0 Median NaN NaN NaN 0 0 Median 544210000 236270000 307940000 544210000 236270000 307940000 0 0 0 14402 1497 14798 38252;38253 60059;60060;60061;60062 60060 1252 4 VMMVALGR RNAWKHSRMFFGKNKVMMVALGRSPSDEYK MFFGKNKVMMVALGRSPSDEYKDNLHQVSK K V M G R S 1 1 0 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 2 0 0 8 0 875.47211 A0A024RAE1;Q9UKD2;B4DHZ2 A0A024RAE1 72 79 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 0.0080122 86.086 2 2.6667 2.6653 NaN 1 Median 2.6667 2.6653 NaN 1 0 Median NaN NaN NaN 0 0 Median 21687000 4927500 16760000 21687000 4927500 16760000 0 0 0 14403 302 14799 38254;38255 60063;60064 60064 215;216 2 VMTIAPGLFGTPLLTSLPEK MTLPIARDLAPIGIRVMTIAPGLFGTPLLT PGLFGTPLLTSLPEKVCNFLASQVPFPSRL R V M E K V 1 0 0 0 0 0 1 2 0 1 4 1 1 1 3 1 3 0 0 1 0 0 20 0 2084.1591 A0A0S2Z410;Q99714 A0A0S2Z410 193 212 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 5.347E-18 119.69 1 3.558 3.517 NaN 1 Median 3.558 3.517 NaN 1 0 Median NaN NaN NaN 0 0 Median 25687000 7091100 18596000 25687000 7091100 18596000 0 0 0 14404 555 14800 38256 60065;60066;60067 60067 412 3 VMTVSFHK HHGDGVEEAFYTTDRVMTVSFHKYGEYFPG AFYTTDRVMTVSFHKYGEYFPGTGDLRDIG R V M H K Y 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 2 0 0 8 0 947.48987 Q6IT96;Q13547;B5BU61;Q5TEE2;B4DSK9;B7Z3S4;E7ESJ6;O15379;Q92769;B3KUJ5 Q6IT96 193 200 HDAC1;HDAC3;HDAC2 Histone deacetylase;Histone deacetylase 1;Histone deacetylase 3;Histone deacetylase 2 no no 2 0.00053116 112.17 1 3 1.6011 2.238 36.677 4 Linear 1.5635 1.7316 NaN 1 0 Median 1.8425 1.4604 35.956 3 0 Plateau 58026000 21925000 36101000 46309000 17340000 28970000 11716000 4585000 7131300 14405 1715;1952 14801;14802 38257;38258;38259;38260 60068;60069;60070;60071 60068 1551 4 VMVAPISGSVTTGTK SPTSSTTSTISPAQKVMVAPISGSVTTGTK VMVAPISGSVTTGTKMVLTTKVGSPATVTF K V M T K M 1 0 0 0 0 0 0 2 0 1 0 1 1 0 1 2 3 0 0 3 0 0 15 0 1446.7752 E7ETD6;Q12830;F5GXF5;J3QQK4 E7ETD6 1936 1950 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00063399 57.175 2 0.68206 0.7202 NaN 1 Median 0.68206 0.7202 NaN 1 0 Median NaN NaN NaN 0 0 Median 20037000 10019000 10018000 20037000 10019000 10018000 0 0 0 14406 1224 14803 38261;38262 60072;60073 60072 934 2 VMVELLGSYTEDNASQAR YEALVDCKKSDAASKVMVELLGSYTEDNAS ELLGSYTEDNASQARVDAHRCIVRALKDPN K V M A R V 2 1 1 1 0 1 2 1 0 0 2 0 1 0 0 2 1 0 1 2 0 0 18 0 1981.9415 Q7L2H7;J3KNJ2;H0YCQ8;E9PRY0 Q7L2H7 184 201 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 2 1.1983E-05 72.496 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14407 1872 14804 38263 60074 60074 1723 1 VMVQPINLIFR ______________________________ KVQKVMVQPINLIFRYLQNRSRIQVWLYEQ K V M F R Y 0 1 1 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 2 0 0 11 0 1328.7639 P62304 P62304 13 23 SNRPE Small nuclear ribonucleoprotein E yes yes 2 0.013155 40.352 2 0.67738 0.58272 1.7957 2 Median NaN NaN NaN 0 0 Median 0.67738 0.58272 1.7957 2 0 Median 8091700 4667100 3424600 0 0 0 8091700 4667100 3424600 14408 1642 14805 38264;38265 60075;60076 60076 1422 2 VNAAFAAR ______________________________ RGSSQLRVNAAFAARYNRYREREELQRLKD R V N A R Y 4 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 818.43989 Q8N9T8;B4DUT2;B4DUY9;H0YFD2;H0YH26;H0YG91 Q8N9T8 12 19 KRI1 Protein KRI1 homolog yes no 2 0.0013709 109.63 2 0.82577 0.8448 NaN 1 Median 0.82577 0.8448 NaN 1 0 Median NaN NaN NaN 0 0 Median 56459000 43156000 13303000 56459000 43156000 13303000 0 0 0 14409 1916 14806 38266;38267 60077;60078 60077 2 VNALLPTETFIPVIR FWRALLSKAYDLLDKVNALLPTETFIPVIR VNALLPTETFIPVIRGLVGNPLPSVRRKAL K V N I R G 1 1 1 0 0 0 1 0 0 2 2 0 0 1 2 0 2 0 0 2 0 0 15 0 1681.9767 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1591 1605 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 2.2506E-10 119.45 2 0.92924 1.0647 2.3419 2 Median 0.92924 1.0647 2.3419 2 0 Median NaN NaN NaN 0 0 Median 295980000 154220000 141760000 295980000 154220000 141760000 0 0 0 14410 897 14807 38268;38269 60079;60080;60081;60082 60080 4 VNATGPQFVSGVIVK NEKTANREECRTQEKVNATGPQFVSGVIVK VNATGPQFVSGVIVKIISTEPLPGRKQVRD K V N V K I 1 0 1 0 0 1 0 2 0 1 0 1 0 1 1 1 1 0 0 4 0 0 15 0 1514.8457 Q4G0J3;H0YA82;D6R9Z6;A0A024RDH5 Q4G0J3 444 458 LARP7;HDCMA18P La-related protein 7 yes no 2 0.0040006 40.475 1 1.4041 1.1052 NaN 1 Median NaN NaN NaN 0 0 Median 1.4041 1.1052 NaN 1 0 Median 4014100 1911700 2102400 0 0 0 4014100 1911700 2102400 14411 1779 14808 38270 60083;60084 60084 2 VNCIQWHQDSGCLYSCSDDK GELHSKLISGGHDNRVNCIQWHQDSGCLYS WHQDSGCLYSCSDDKHIVEWNVQTCKVKCK R V N D K H 0 0 1 3 3 2 0 1 1 1 1 1 0 0 0 3 0 1 1 1 0 0 20 0 2470.994 Q15061;C9JEE7 Q15061 129 148 WDR43 WD repeat-containing protein 43 yes no 3 2.9153E-07 78.794 2 2 1.0328 0.92867 7.6153 4 Median 0.89269 0.92867 9.0953 2 0 Median 1.1605 0.92711 9.5513 2 0 Median 52893000 26013000 26880000 30594000 14808000 15786000 22299000 11205000 11094000 14412 1752 14809 38271;38272;38273;38274 60085;60086;60087;60088;60089;60090;60091;60092 60085 8 VNCSFYFK MAEYLASIFGTEKDKVNCSFYFKIGACRHG FGTEKDKVNCSFYFKIGACRHGDRCSRLHN K V N F K I 0 0 1 0 1 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 8 0 1063.4797 P0DN76;Q01081;B5BU08;A0A1B0GW87;M0QYK5;Q69YM7;M0R2N4;Q8WU68 P0DN76 16 23 U2AF1;U2AF1L4;DKFZp313J1712 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 2 0.040852 50.703 1 1 1.0964 1.097 NaN 1 Median 1.0964 1.097 NaN 1 0 Median NaN NaN NaN 0 0 Median 18175000 10001000 8174700 15488000 7312900 8174700 2687700 2687700 0 14413 1463 14810 38275;38276 60093;60094 60093 2 VNDFETADILCPK SNLVTHLDSFLPICRVNDFETADILCPKAK CRVNDFETADILCPKAKRTSRFLSGIINFI R V N P K A 1 0 1 2 1 0 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 13 0 1520.7181 A0A024R8Y0;Q9BZD4;E9PQC4;B1AQT4;E9PP32;E9PKH1;B1AQT3 A0A024R8Y0 101 113 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 0.0028453 67.385 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2653800 0 2653800 0 0 0 2653800 0 2653800 14414 264 14811 38277 60095 60095 1 VNDFLAEIFK EKGASRIDEKSSKAKVNDFLAEIFKKIGSK SSKAKVNDFLAEIFKKIGSKENTKEGLAEL K V N F K K 1 0 1 1 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 10 0 1194.6285 Q14008;Q8IYN5;H0YDX5 Q14008 1829 1838 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.00069328 82.749 2 1.2668 1.2798 0.038221 2 Median 1.2668 1.2798 0.038221 2 0 Median NaN NaN NaN 0 0 Median 15608000 7016400 8592100 15608000 7016400 8592100 0 0 0 14415 1725 14812 38278;38279 60096;60097;60098;60099 60097 4 VNDSDDLIMTENEVGK RQNIRRSLKEILWKRVNDSDDLIMTENEVG NDSDDLIMTENEVGKIALHIEKEMFNLFQV R V N G K I 0 0 2 3 0 0 2 1 0 1 1 1 1 0 0 1 1 0 0 2 0 0 16 0 1777.804 Q9BTC0 Q9BTC0 686 701 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00038042 61.11 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14416 2002 14813 38280 60100 60100 1844 1 VNDTIQIDLETGK THDARTIRYPDPLIKVNDTIQIDLETGKIT IKVNDTIQIDLETGKITDFIKFDTGNLCMV K V N G K I 0 0 1 2 0 1 1 1 0 2 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1444.7409 B2R491;P62701;Q96IR1;Q53HV1 B2R491 156 168 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 4.5273E-30 164.9 2 2 1.0931 1.304 21.024 4 Linear 1.0893 1.2849 0.18986 2 0 Median 1.0355 0.8938 2.9548 2 0 Median 1105600000 523620000 581980000 836880000 395320000 441560000 268730000 128300000 140430000 14417 824 14814 38281;38282;38283;38284 60101;60102;60103;60104;60105;60106;60107;60108 60106 8 VNEISVEVDSDPR TRAKKKMVVMHPMPRVNEISVEVDSDPRAA PRVNEISVEVDSDPRAAYFRQAENGMYIRM R V N P R A 0 1 1 2 0 0 2 0 0 1 0 0 0 0 1 2 0 0 0 3 0 0 13 0 1457.6998 Q53SY7;F8VPD4;P27708;H7C2E4 Q53SY7 2114 2126 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00027041 72.531 3 1 0.81226 0.77467 18.029 2 Median 0.83958 0.88 NaN 1 0 Median 0.78583 0.68195 NaN 1 0 Median 14779000 8202200 6576400 12356000 6749000 5606600 2422900 1453100 969790 14418 1259 14815 38285;38286;38287;38288 60109;60110;60111;60112;60113 60109 5 VNEVLNR RLLAHRVETKMKGNKVNEVLNRLHLAIPTR ETKMKGNKVNEVLNRLHLAIPTRRDDKERP K V N N R L 0 1 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 842.46102 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 351 357 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 4.8827E-17 175.93 1 1 1.5237 1.4835 12.978 2 Median 1.1984 1.3534 NaN 1 0 Median 1.9374 1.626 NaN 1 0 Median 111410000 52491000 58918000 101390000 49222000 52171000 10016000 3269600 6746400 14419 1183 14816 38289;38290 60114;60115;60116;60117 60115 4 VNFDDYTVNLGGLK IFEQPESVVNTMRGRVNFDDYTVNLGGLKD RVNFDDYTVNLGGLKDHIKEIQRCRRLILI R V N L K D 0 0 2 2 0 0 0 2 0 0 2 1 0 1 0 0 1 0 1 2 0 0 14 0 1553.7726 Q06210 Q06210 362 375 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 4.0499E-06 100.72 1 1 1.6588 1.5416 94.555 2 Median 2.8351 3.0085 NaN 1 0 Median 0.97055 0.78997 NaN 1 0 Median 36046000 9889700 26156000 31492000 7550200 23941000 4554200 2339600 2214700 14420 1688 14817 38291;38292 60118;60119;60120;60121;60122 60119 5 VNFLPEIITLSK STRVRGRTGNVLKLKVNFLPEIITLSKEVR KLKVNFLPEIITLSKEVRNLKWLGFRVPLA K V N S K E 0 0 1 0 0 0 1 0 0 2 2 1 0 1 1 1 1 0 0 1 0 0 12 0 1372.7966 Q14204 Q14204 737 748 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.010019 46.706 1 2.1145 2.0972 NaN 1 Median 2.1145 2.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median 8196400 2823400 5373000 8196400 2823400 5373000 0 0 0 14421 1729 14818 38293 60123;60124 60124 2 VNFPENGFLSPDK YRRPYEKGRLIIEFKVNFPENGFLSPDKLS FKVNFPENGFLSPDKLSLLEKLLPERKEVE K V N D K L 0 0 2 1 0 0 1 1 0 0 1 1 0 2 2 1 0 0 0 1 0 0 13 0 1462.7092 P31689;B7Z5C0;Q9NXZ8 P31689 326 338 DNAJA1;HDJ2 DnaJ homolog subfamily A member 1 yes no 2 0.0001783 71.555 2 1 1.1328 1.2488 37.421 3 Median 1.2014 1.2863 4.1776 2 0 Median 0.8509 0.67409 NaN 1 0 Median 78053000 35270000 42783000 73160000 33055000 40104000 4893200 2214100 2679100 14422 1535 14819 38294;38295;38296 60125;60126;60127;60128;60129 60129 5 VNFTVDQIR ______________________________ ______________________________ M V N I R A 0 1 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 2 0 0 9 0 1090.5771 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 2 10 EEF2 Elongation factor 2 yes no 2 0.00034716 101.25 2 2 2.7877 3.9439 40.267 4 Linear 3.4033 3.8509 4.5186 2 0 Median 2.2739 1.9201 0.78466 2 0 Median 133900000 30409000 103490000 122160000 27033000 95126000 11737000 3376000 8360600 14423 1478 14820 38297;38298;38299;38300 60130;60131;60132;60133;60134;60135;60136;60137 60132 8 VNGRPLEMIEPR ATAVAHCKRGNGLIKVNGRPLEMIEPRTLQ LIKVNGRPLEMIEPRTLQYKLLEPVLLLGK K V N P R T 0 2 1 0 0 0 2 1 0 1 1 0 1 0 2 0 0 0 0 1 0 0 12 1 1409.7449 P62249;M0R3H0;M0R1M5;Q6IPX4 P62249 34 45 RPS16 40S ribosomal protein S16 yes no 3 0.0012872 51.726 1 1.3349 1.4528 NaN 1 Median 1.3349 1.4528 NaN 1 0 Median NaN NaN NaN 0 0 Median 64902000 27787000 37115000 64902000 27787000 37115000 0 0 0 14424 1636 14821 38301 60138 60138 1416 1 VNGSEQTVVAFFIMPAR DVFLEALARLNYLLRVNGSEQTVVAFFIMP GSEQTVVAFFIMPARTNNFNVETLKGQAVR R V N A R T 2 1 1 0 0 1 1 1 0 1 0 0 1 2 1 1 1 0 0 3 0 0 17 0 1864.9506 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6 P13807 355 371 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.0027986 44.616 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2634000 2634000 0 0 0 0 2634000 2634000 0 14425 1479 14822 38302 60139 60139 1236 1 VNIFGVESGKK SPDSQYLATGTHVGKVNIFGVESGKKEYSL HVGKVNIFGVESGKKEYSLDTRGKFILSIA K V N K K E 0 0 1 0 0 0 1 2 0 1 0 2 0 1 0 1 0 0 0 2 0 0 11 1 1176.6503 H0YN81;Q9GZS3;H0YMF9;H0YL19 H0YN81 130 140 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 0.042039 41.399 1 1.7486 1.55 NaN 1 Median NaN NaN NaN 0 0 Median 1.7486 1.55 NaN 1 0 Median 2296500 897740 1398800 0 0 0 2296500 897740 1398800 14426 1299 14823 38303 60140 60140 1 VNIISVTNK FSKDGTLFAWGNGEKVNIISVTNKGLLHSF WGNGEKVNIISVTNKGLLHSFDLLKAVCLE K V N N K G 0 0 2 0 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 2 0 0 9 0 986.57605 Q9BY44;C9IZE1;H7C5Q3 Q9BY44 59 67 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 2 0.0056175 66.27 3 2.3332 2.3986 NaN 1 Median 2.3332 2.3986 NaN 1 0 Median NaN NaN NaN 0 0 Median 16733000 3451700 13281000 16733000 3451700 13281000 0 0 0 14427 2017 14824 38304;38305;38306 60141;60142;60143 60143 3 VNILEVASGAVLR LDQTGQHLFCVCGTRVNILEVASGAVLRSL TRVNILEVASGAVLRSLEQEDQEDITAFDL R V N L R S 2 1 1 0 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 3 0 0 13 0 1339.7823 Q12788 Q12788 47 59 TBL3 Transducin beta-like protein 3 yes yes 2 1.822E-13 130.16 2 2 1.043 1.0336 3.5767 4 Median 0.8949 1.0258 0.0031227 2 0 Median 1.2391 1.0732 4.233 2 0 Median 425390000 218830000 206560000 330800000 175200000 155600000 94591000 43636000 50954000 14428 1698 14825 38307;38308;38309;38310 60144;60145;60146;60147;60148;60149;60150;60151 60147 8 VNIVFNYDMPEDSDTYLHR LVATNLFGRGMDIERVNIVFNYDMPEDSDT FNYDMPEDSDTYLHRVARAGRFGTKGLAIT R V N H R V 0 1 2 3 0 0 1 0 1 1 1 0 1 1 1 1 1 0 2 2 0 0 19 0 2327.0528 O00148;B4DX78;Q69YT6 O00148 355 373 DDX39A;DKFZp547B159 ATP-dependent RNA helicase DDX39A yes no 3 3.2125E-06 73.783 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34274000 0 34274000 34274000 0 34274000 0 0 0 14429 1359 14826 38311;38312 60152;60153 60153 1028 2 VNLAELFK AIPAVEVFEGEPGNKVNLAELFKGKKGVLF EGEPGNKVNLAELFKGKKGVLFGVPGAFTP K V N F K G 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 8 0 932.53312 V9HW35;P30044 V9HW35 24 31 HEL-S-55;PRDX5 Peroxiredoxin-5, mitochondrial yes no 2 0.014375 70.525 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6260300 0 6260300 6260300 0 6260300 0 0 0 14430 1529 14827 38313;38314 60154;60155 60154 2 VNLFTDFDK KNADGYKLDKQHTFRVNLFTDFDKYMTISD KQHTFRVNLFTDFDKYMTISDEWDIPEKQP R V N D K Y 0 0 1 2 0 0 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 9 0 1097.5393 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q86UM1;C9JZG1 Q96G38 72 80 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 2 0.00056832 97.431 2 1.6833 1.6814 7.7499 2 Median 1.6833 1.6814 7.7499 2 0 Median NaN NaN NaN 0 0 Median 33039000 11128000 21912000 33039000 11128000 21912000 0 0 0 14431 241 14828 38315;38316 60156;60157;60158;60159;60160 60160 5 VNLLSFTGSTQVGK CGGADIGTAMAKDERVNLLSFTGSTQVGKQ RVNLLSFTGSTQVGKQVGLMVQERFGRSLL R V N G K Q 0 0 1 0 0 1 0 2 0 0 2 1 0 1 0 2 2 0 0 2 0 0 14 0 1449.7827 A0A1B0GTY9;A0A140T9V3;A0A1B0GTG2;A0A1B0GW77;P49419;A0A0J9YWF7;A0A1B0GV49;A0A1B0GTJ4;A0A1B0GUA1;A0A1B0GW82;A0A1B0GUY0 A0A1B0GTY9 267 280 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.0017963 69.451 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7252000 0 7252000 7252000 0 7252000 0 0 0 14432 598 14829 38317;38318 60161;60162 60161 2 VNLNTIK ATMFQNLFPSINVHKVNLNTIKRCLLIDYN FPSINVHKVNLNTIKRCLLIDYNPDSQELD K V N I K R 0 0 2 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 7 0 800.4756 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3 A0A0A6YYI3 172 178 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.030461 68.7 1 0.81222 0.94052 NaN 1 Median 0.81222 0.94052 NaN 1 0 Median NaN NaN NaN 0 0 Median 208980000 113780000 95201000 208980000 113780000 95201000 0 0 0 14433 493 14830 38319 60163 60163 1 VNLTLADLEQLAGSDLK EGGEEYNAMMKNCLRVNLTLADLEQLAGSD LTLADLEQLAGSDLKVPNEDTKSDGPETTT R V N L K V 2 0 1 2 0 1 1 1 0 0 5 1 0 0 0 1 1 0 0 1 0 0 17 0 1798.9676 A0A024R250;Q76FK4;F8WE42;F5H101;A6H8Z4;Q6AI50 A0A024R250 490 506 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 6.9851E-18 127.71 2 1.0486 1.142 0.5103 2 Median 1.0486 1.142 0.5103 2 0 Median NaN NaN NaN 0 0 Median 76666000 37191000 39475000 76666000 37191000 39475000 0 0 0 14434 104 14831 38320;38321 60164;60165 60164 2 VNNASLIGLGYTQTLRPGVK AAKYMLDCRTSLSAKVNNASLIGLGYTQTL LIGLGYTQTLRPGVKLTLSALIDGKNFSAG K V N V K L 1 1 2 0 0 1 0 3 0 1 3 1 0 0 1 1 2 0 1 2 0 0 20 1 2100.1691 Q9Y277 Q9Y277 237 256 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2;3 1.0921E-06 67.579 3 2 1.8702 1.8956 12.404 4 Median 1.5466 1.8473 5.9064 2 0 Median 2.4229 2.0949 16.387 2 0 Median 384420000 130610000 253810000 318950000 112410000 206540000 65471000 18201000 47270000 14435 2124 14832 38322;38323;38324;38325;38326 60166;60167;60168;60169;60170;60171 60167 6 VNNSSLIGLGYTQTLK AAKYQIDPDACFSAKVNNSSLIGLGYTQTL NNSSLIGLGYTQTLKPGIKLTLSALLDGKN K V N L K P 0 0 2 0 0 1 0 2 0 1 3 1 0 0 0 2 2 0 1 1 0 0 16 0 1706.9203 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 237 252 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 1.576E-09 121.24 2 2 1.8328 1.8197 7.6049 4 Median 1.6371 1.9225 3.5993 2 0 Median 2.0508 1.7091 4.7008 2 0 Median 777890000 271950000 505930000 685900000 242120000 443780000 91987000 29830000 62158000 14436 639 14833 38327;38328;38329;38330 60172;60173;60174;60175;60176;60177 60174 6 VNNSSLIGLGYTQTLKPGIK AAKYQIDPDACFSAKVNNSSLIGLGYTQTL LIGLGYTQTLKPGIKLTLSALLDGKNVNAG K V N I K L 0 0 2 0 0 1 0 3 0 2 3 2 0 0 1 2 2 0 1 1 0 0 20 1 2102.1736 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 237 256 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2;3 1.4002E-06 62.684 2 3 2.0252 1.8792 9.2955 5 Median 1.7839 2.0875 4.4322 2 0 Median 2.1312 1.8126 4.3318 3 0 Plateau 243570000 88122000 155450000 139360000 53915000 85445000 104210000 34206000 70002000 14437 639 14834 38331;38332;38333;38334;38335 60178;60179;60180;60181;60182;60183;60184;60185 60181 7 VNNSSLIGVGYTQTLR AAKYQLDPTASISAKVNNSSLIGVGYTQTL NNSSLIGVGYTQTLRPGVKLTLSALVDGKS K V N L R P 0 1 2 0 0 1 0 2 0 1 2 0 0 0 0 2 2 0 1 2 0 0 16 0 1720.9108 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;B4DKM5 A0A0A0MR02 248 263 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 7.5637E-05 81.494 1 1.808 1.7752 NaN 1 Median 1.808 1.7752 NaN 1 0 Median NaN NaN NaN 0 0 Median 13722000 5374800 8347500 13722000 5374800 8347500 0 0 0 14438 28 14835 38336 60186 60186 1 VNNSSLIGVGYTQTLRPGVK AAKYQLDPTASISAKVNNSSLIGVGYTQTL LIGVGYTQTLRPGVKLTLSALVDGKSINAG K V N V K L 0 1 2 0 0 1 0 3 0 1 2 1 0 0 1 2 2 0 1 3 0 0 20 1 2102.1484 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;B4DKM5 A0A0A0MR02 248 267 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2;3 5.7982E-10 107.65 5 4 2.6616 2.7654 3.382 8 Median 2.2716 2.7395 2.7566 4 0 Median 3.161 2.7654 4.2918 4 0 Median 1856300000 582790000 1273500000 1574600000 514450000 1060200000 281650000 68334000 213320000 14439 28 14836 38337;38338;38339;38340;38341;38342;38343;38344;38345 60187;60188;60189;60190;60191;60192;60193;60194;60195;60196;60197;60198;60199 60188 13 VNNTFSECLNLINEGCPK TTMAEEDEQRLFTEKVNNTFSECLNLINEG TFSECLNLINEGCPKEDILVTLNDLIKNIP K V N P K E 0 0 4 0 2 0 2 1 0 1 2 1 0 1 1 1 1 0 0 1 0 0 18 0 2107.9667 B2RMQ4;Q8WWK9 B2RMQ4 422 439 CKAP2 Cytoskeleton-associated protein 2 yes no 2 2.859E-12 110.51 2 2 1.3438 1.0126 2.9646 4 Linear 0.92049 0.95355 0.5047 2 0 Median 1.2613 1.0016 1.3989 2 0 Median 54915000 26353000 28562000 23753000 12214000 11538000 31163000 14139000 17024000 14440 895 14837 38346;38347;38348;38349 60200;60201;60202;60203;60204;60205 60201 6 VNNVNGNQVGHLK LQRDPNNPYDKNAIKVNNVNGNQVGHLKKE IKVNNVNGNQVGHLKKELAGALAYIMDNKL K V N L K K 0 0 4 0 0 1 0 2 1 0 1 1 0 0 0 0 0 0 0 3 0 0 13 0 1391.727 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;Q05DQ5;Q05DF7;Q05BZ6 Q59GQ7 100 112 HLTF Helicase-like transcription factor yes no 2 0.00030467 87.308 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3821800 3821800 0 3821800 3821800 0 0 0 0 14441 512 14838 38350 60206 60206 1 VNNVYDVDNK RAVLAELNASLLGMRVNNVYDVDNKTYLIR LLGMRVNNVYDVDNKTYLIRLQKPDFKATL R V N N K T 0 0 3 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 3 0 0 10 0 1178.5568 G3V547;G3V4D9;G3V5V3;O60524 G3V547 26 35 NEMF Nuclear export mediator factor NEMF yes no 2 0.0083751 59.645 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14442 1274 14839 38351 60207 60207 1 VNPAAALEELEK GKAKKALKEFEQLRKVNPAAALEELEKIEK LRKVNPAAALEELEKIEKARMMERMSLKHQ K V N E K I 3 0 1 0 0 0 3 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 12 0 1282.6769 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 274 285 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 2.6748E-08 119.34 2 2 1.1951 1.1417 5.0317 4 Median 0.98924 1.1124 2.1603 2 0 Median 1.4693 1.1931 4.7117 2 0 Median 243150000 116960000 126200000 185830000 93350000 92476000 57328000 23607000 33722000 14443 2008 14840 38352;38353;38354;38355 60208;60209;60210;60211;60212;60213;60214;60215 60211 8 VNPHSLPDPEVNEQSSSK KQEPHPGTSRQRQTRVNPHSLPDPEVNEQS HSLPDPEVNEQSSSKGMFRKKGGWKAGPEG R V N S K G 0 0 2 1 0 1 2 0 1 0 1 1 0 0 3 4 0 0 0 2 0 0 18 0 1962.9283 Q96F88;Q99575;E5RK39 Q96F88 61 78 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2;3 9.2371E-17 113.14 4 2 0.42835 0.4035 18.042 4 Median 0.31736 0.34648 7.4355 2 0 Median 0.57749 0.46623 6.3227 2 0 Median 112540000 82511000 30026000 97062000 73212000 23850000 15476000 9299700 6175900 14444 1965 14841 38356;38357;38358;38359;38360;38361 60216;60217;60218;60219;60220;60221;60222;60223;60224;60225 60217 10 VNPIQGLASK KEWVAKQTKRMLDMKVNPIQGLASKWDYEK MLDMKVNPIQGLASKWDYEKNEWKK_____ K V N S K W 1 0 1 0 0 1 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 10 0 1025.5869 P13073 P13073 150 159 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 2 1.2713E-05 103.19 1 1 1.2588 1.1889 6.7164 2 Median 1.1072 1.2468 NaN 1 0 Median 1.4311 1.1338 NaN 1 0 Median 73670000 36212000 37459000 69692000 34669000 35023000 3978700 1542900 2435700 14445 1477 14842 38362;38363 60226;60227 60226 2 VNPQISDEKDEDEKEEK DLAAKRRPEEKEPEKVNPQISDEKDEDEKE PQISDEKDEDEKEEKRRKTTPKEPTEKKMA K V N E K R 0 0 1 3 0 1 5 0 0 1 0 3 0 0 1 1 0 0 0 1 0 0 17 2 2030.928 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 369 385 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 3 0.019633 25.167 1 0.94969 0.93927 NaN 1 Median NaN NaN NaN 0 0 Median 0.94969 0.93927 NaN 1 0 Median 1894300 946110 948200 0 0 0 1894300 946110 948200 14446 222 14843 38364 60228;60229 60228 2 VNPTVFFDIAVDGEPLGR ______________________________ TVFFDIAVDGEPLGRVSFELFADKVPKTAE M V N G R V 1 1 1 2 0 0 1 2 0 1 1 0 0 2 2 0 1 0 0 3 0 0 18 0 1944.9945 V9HWF5;A8K486;P62937;B4DM82;B2RE56;F8WE65;C9J5S7;E5RIZ5 V9HWF5 2 19 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 2 2.3463E-18 117.92 2 4.0481 4.3341 NaN 1 Median 4.0481 4.3341 NaN 1 0 Median NaN NaN NaN 0 0 Median 36868000 5890900 30977000 36868000 5890900 30977000 0 0 0 14447 731 14844 38365;38366 60230;60231;60232;60233 60230 4 VNQAIWLLCTGAR GTVRRQAVDVSPLRRVNQAIWLLCTGAREA RRVNQAIWLLCTGAREAAFRNIKTIAECLA R V N A R E 2 1 1 0 1 1 0 1 0 1 2 0 0 0 0 0 1 1 0 1 0 0 13 0 1500.7871 M0R0F0;Q53G25;A0A024R4Q8;P46782;M0R0R2;M0QZN2 M0R0F0 147 159 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 1.8317E-06 110.39 2 2 0.99549 0.92365 23.325 4 Median 1.0404 1.1519 9.7956 2 0 Median 0.94976 0.77907 2.6414 2 0 Median 119800000 51523000 68280000 98692000 40675000 58016000 21111000 10848000 10263000 14448 160 14845 38367;38368;38369;38370 60234;60235;60236;60237;60238;60239;60240;60241;60242;60243;60244 60244 11 VNQCVIGTAQANR ENVSESLNSLRFASKVNQCVIGTAQANRK_ SKVNQCVIGTAQANRK______________ K V N N R K 2 1 2 0 1 2 0 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 13 0 1429.7096 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 660 672 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.001001 78.136 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14449 371 14846 38371 60245 60245 1 VNQELAGYTGGDVSFIK SRNSSILPRRGALLKVNQELAGYTGGDVSF QELAGYTGGDVSFIKEDFELQLNKQLIFDS K V N I K E 1 0 1 1 0 1 1 3 0 1 1 1 0 1 0 1 1 0 1 2 0 0 17 0 1796.8945 Q9Y512 Q9Y512 281 297 SAMM50 Sorting and assembly machinery component 50 homolog no no 2 1.0005E-09 110.92 2 2 1.3741 1.2844 27.531 4 Median 1.0252 1.1128 4.5543 2 0 Median 2.0832 1.687 22.84 2 0 Median 90579000 49528000 41051000 73915000 43398000 30518000 16664000 6130200 10534000 14450 2147 14847 38372;38373;38374;38375 60246;60247;60248;60249;60250 60247 5 VNQPASFAIR ARRLTVMSLQESGLKVNQPASFAIRLNGAK ESGLKVNQPASFAIRLNGAKGKIDAKVHSP K V N I R L 2 1 1 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 10 0 1101.5931 O75369;A0A024R321;Q68CT4;E7EN95 O75369 2302 2311 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.00030431 90.657 1 1.5147 1.5823 NaN 1 Median 1.5147 1.5823 NaN 1 0 Median NaN NaN NaN 0 0 Median 10634000 5086600 5547200 10634000 5086600 5547200 0 0 0 14451 1402 14848 38376 60251 60251 1 VNQPASFAVSLNGAK ARRLTVSSLQESGLKVNQPASFAVSLNGAK VNQPASFAVSLNGAKGAIDAKVHSPSGALE K V N A K G 3 0 2 0 0 1 0 1 0 0 1 1 0 1 1 2 0 0 0 2 0 0 15 0 1501.7889 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5 P21333 2347 2361 FLNA;FLJ00119 Filamin-A yes no 2 0.00049803 56.205 2 1.3572 1.3897 6.7676 2 Median 1.3572 1.3897 6.7676 2 0 Median NaN NaN NaN 0 0 Median 27692000 13316000 14376000 27692000 13316000 14376000 0 0 0 14452 1504 14849 38377;38378 60252;60253;60254;60255;60256 60256 5 VNQTVAALK YKYSKEKTLKWLEKKVNQTVAALKTNNVNV KWLEKKVNQTVAALKTNNVNVSSRVQSTAF K V N L K T 2 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 0 942.54983 A0A087WXR7;Q8N451;Q5TBB1 A0A087WXR7 141 149 RNASEH2B Ribonuclease H2 subunit B yes no 1 0.0036651 81.296 1 0.57031 0.58681 NaN 1 Median 0.57031 0.58681 NaN 1 0 Median NaN NaN NaN 0 0 Median 17432000 10459000 6972900 17432000 10459000 6972900 0 0 0 14453 430 14850 38379 60257 60257 1 VNSININQGSITFAGGPGR HVIETLTKTALSANRVNSININQGSITFAG NINQGSITFAGGPGRDGTIDFTPGSELLIT R V N G R D 1 1 3 0 0 1 0 4 0 3 0 0 0 1 1 2 1 0 0 1 0 0 19 0 1900.9755 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 989 1007 MYO1C Unconventional myosin-Ic no no 2 1.7313E-39 151.74 2 2 1.1882 1.0962 13.361 4 Median 1.1344 1.247 9.1444 2 0 Median 1.2321 1.0097 2.55 2 0 Median 114310000 54889000 59422000 92822000 45559000 47263000 21489000 9329800 12159000 14454 1088;1189 14851 38380;38381;38382;38383 60258;60259;60260;60261;60262;60263;60264;60265 60260 8 VNSLAPGPISGTEGLR MTRHLAVEWGPQNIRVNSLAPGPISGTEGL NSLAPGPISGTEGLRRL_____________ R V N L R R 1 1 1 0 0 0 1 3 0 1 2 0 0 0 2 2 1 0 0 1 0 0 16 0 1566.8366 A0A0J9YWI0;Q4VXZ8;Q9NUI1 A0A0J9YWI0 221 236 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase yes no 2 3.7544E-06 88.187 1 0.41064 0.42791 NaN 1 Median 0.41064 0.42791 NaN 1 0 Median NaN NaN NaN 0 0 Median 13383000 10163000 3220500 13383000 10163000 3220500 0 0 0 14455 538 14852 38384 60266;60267;60268 60267 3 VNSLGETAER KHEGFERDLAALGDKVNSLGETAERLIQSH ALGDKVNSLGETAERLIQSHPESAEDLQEK K V N E R L 1 1 1 0 0 0 2 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 10 0 1074.5306 A0A0D9SF54;A0A0D9SGF6;Q13813;A0A024R889;Q9UG16 A0A0D9SF54 1269 1278 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0013256 74.165 1 1.7139 1.7191 NaN 1 Median 1.7139 1.7191 NaN 1 0 Median NaN NaN NaN 0 0 Median 16150000 4724200 11426000 16150000 4724200 11426000 0 0 0 14456 523 14853 38385 60269 60269 1 VNTDLGNDLYFVK EEPIPETRIEVEIPKVNTDLGNDLYFVKLP PKVNTDLGNDLYFVKLPNFLSVEPRPFDPQ K V N V K L 0 0 2 2 0 0 0 1 0 0 2 1 0 1 0 0 1 0 1 2 0 0 13 0 1496.7511 B4DNM0;Q8WVC0 B4DNM0 343 355 LEO1 RNA polymerase-associated protein LEO1 yes no 2 7.998E-09 117.14 2 2 1.7518 1.9592 18.269 4 Linear 1.7518 1.9216 2.7149 2 0 Median 1.7395 1.4037 2.8243 2 0 Median 111140000 39372000 71763000 93893000 32662000 61231000 17243000 6710000 10533000 14457 1012 14854 38386;38387;38388;38389 60270;60271;60272;60273;60274;60275;60276;60277 60271 8 VNTFSALLLEPYKPPSAQ VKLPLLPHEVRGADKVNTFSALLLEPYKPP FSALLLEPYKPPSAQ_______________ K V N A Q - 2 0 1 0 0 1 1 0 0 0 3 1 0 1 3 2 1 0 1 1 0 0 18 1 1974.0462 A0A087WXS7;O43681 A0A087WXS7 314 331 ASNA1 ATPase ASNA1 yes no 2 0.00071797 66.989 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4225100 0 4225100 4225100 0 4225100 0 0 0 14458 431 14855 38390 60278 60278 1 VNTLIRPDGEK IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV DVAKVNTLIRPDGEKKAYVRLAPDYDALDV K V N E K K 0 1 1 1 0 0 1 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 11 1 1240.6776 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 126 136 RPL23A 60S ribosomal protein L23a yes no 2;3 5.5648E-79 261.35 12 4 0.64825 0.68327 14.696 13 Median 0.56207 0.68471 16.608 9 0 Median 0.75692 0.66158 3.2173 4 0 Median 9598900000 5696500000 3902400000 9100800000 5417900000 3682800000 498160000 278600000 219560000 14459 796 14856 38391;38392;38393;38394;38395;38396;38397;38398;38399;38400;38401;38402;38403;38404;38405;38406 60279;60280;60281;60282;60283;60284;60285;60286;60287;60288;60289;60290;60291;60292;60293;60294;60295;60296;60297;60298;60299;60300;60301;60302;60303;60304;60305;60306;60307;60308 60289 30 VNTLIRPDGEKK IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV VAKVNTLIRPDGEKKAYVRLAPDYDALDVA K V N K K A 0 1 1 1 0 0 1 1 0 1 1 2 0 0 1 0 1 0 0 1 0 0 12 2 1368.7725 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 126 137 RPL23A 60S ribosomal protein L23a yes no 3 0.01701 41.401 1 0.85973 0.83697 NaN 1 Median NaN NaN NaN 0 0 Median 0.85973 0.83697 NaN 1 0 Median 20634000 11406000 9227600 0 0 0 20634000 11406000 9227600 14460 796 14857 38407 60309;60310 60309 2 VNTPTTTVYR MFKYNKFKCRILNEKVNTPTTTVYRCGPLI ILNEKVNTPTTTVYRCGPLIDLCRGPHVRH K V N Y R C 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 4 0 1 2 0 0 10 0 1150.5982 Q5M7Z9;B2RDX5;Q53GX7;P26639;B4DKZ9;B3KTN2 Q5M7Z9 244 253 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.00060252 84.213 2 1 1.2296 1.1736 69.478 2 Median 1.8477 1.9182 NaN 1 0 Median 0.8183 0.71808 NaN 1 0 Median 42984000 9161400 33822000 41262000 8282200 32980000 1721900 879180 842740 14461 892 14858 38408;38409;38410 60311;60312;60313 60311 3 VNVDPEDLIPK RCLDLYLCPRQRKMRVNVDPEDLIPKLPRP RKMRVNVDPEDLIPKLPRPRDLQPFPTCQA R V N P K L 0 0 1 2 0 0 1 0 0 1 1 1 0 0 2 0 0 0 0 2 0 0 11 0 1237.6554 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 381 391 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.00013811 95.483 2 2 1.0296 0.99988 3.0876 4 Median 0.86582 0.99313 3.9158 2 0 Median 1.2315 1.0036 3.4873 2 0 Median 380500000 197390000 183110000 326360000 173250000 153110000 54142000 24145000 29997000 14462 1726 14859 38411;38412;38413;38414 60314;60315;60316;60317;60318;60319;60320 60319 7 VNVTGIYR FAHNDLVDKVQPGDRVNVTGIYRAVPIRVN KVQPGDRVNVTGIYRAVPIRVNPRVSNVKS R V N Y R A 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 2 0 0 8 0 920.50797 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RG31 B4DLA6 348 355 MCM4 DNA replication licensing factor MCM4 yes no 2 0.027047 54.157 1 3.6472 4.043 NaN 1 Median 3.6472 4.043 NaN 1 0 Median NaN NaN NaN 0 0 Median 65614000 18578000 47036000 65614000 18578000 47036000 0 0 0 14463 235 14860 38415 60321 60321 1 VNVTVDYIRPASPATETVPAFSER FEAREFLRKKLIGKKVNVTVDYIRPASPAT PASPATETVPAFSERTCATVTIGGINIAEA K V N E R T 3 2 1 1 0 0 2 0 0 1 0 0 0 1 3 2 3 0 1 4 0 0 24 1 2618.334 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8 A0A140VK49 415 438 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 3 1.0813E-12 74.408 2 2 1.2259 1.2321 34.952 4 Median 1.4808 1.6583 1.0844 2 0 Median 1.0283 0.90578 2.5831 2 0 Median 139670000 52679000 86989000 116830000 41445000 75386000 22837000 11234000 11603000 14464 618 14861 38416;38417;38418;38419 60322;60323;60324;60325;60326;60327;60328;60329;60330;60331;60332 60328 11 VPAELICLDPR RKQRQEWEVKALLEKVPAELICLDPRALAE LLEKVPAELICLDPRALAEVDVISLEQGKK K V P P R A 1 1 0 1 1 0 1 0 0 1 2 0 0 0 2 0 0 0 0 1 0 0 11 0 1281.6751 B0UZZ8;O15213;B4DNI0;A8K9A1;B4DP15;A8K806 B0UZZ8 509 519 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 2.6146E-05 102.52 1 2 1.3173 1.0806 9.1672 3 Median 0.83348 0.92273 NaN 1 0 Median 1.3183 1.0815 0.11793 2 0 Median 88704000 47196000 41507000 61840000 34772000 27067000 26864000 12424000 14440000 14465 809 14862 38420;38421;38422 60333;60334;60335;60336;60337;60338;60339 60333 7 VPAGNWVLIEGVDQPIVK RLWISVARYHIEVNRVPAGNWVLIEGVDQP GNWVLIEGVDQPIVKTATITEPRGNEEAQI R V P V K T 1 0 1 1 0 1 1 2 0 2 1 1 0 0 2 0 0 1 0 4 0 0 18 0 1933.0673 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 495 512 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 2.6066E-31 150.26 1 2 0.90583 1.0003 17.59 3 Plateau 0.8988 1.0003 NaN 1 0 Median 0.92122 0.74282 5.3411 2 0 Median 83715000 44578000 39137000 60872000 33573000 27299000 22843000 11005000 11838000 14466 794 14863 38423;38424;38425 60340;60341;60342;60343 60340 4 VPAHGHPVIER YCSNISFYLILKARRVPAHGHPVIERLVTY KARRVPAHGHPVIERLVTYRNLINKLSVVD R V P E R L 1 1 0 0 0 0 1 1 2 1 0 0 0 0 2 0 0 0 0 2 0 0 11 0 1210.6571 Q9NQZ2 Q9NQZ2 290 300 UTP3 Something about silencing protein 10 yes yes 3 0.035022 35.737 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3221700 0 3221700 3221700 0 3221700 0 0 0 14467 2063 14864 38426 60344 60344 1 VPAINVNDSVTK GVHNLYKMMANGILKVPAINVNDSVTKSKF ILKVPAINVNDSVTKSKFDNLYGCRESLID K V P T K S 1 0 2 1 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 3 0 0 12 0 1255.6772 P23526;Q1RMG2 P23526 175 186 AHCY Adenosylhomocysteinase yes no 2 0.00023679 87.777 2 1 1.3733 1.5243 46.601 3 Median 1.4418 1.5742 4.5576 2 0 Median 0.87828 0.70367 NaN 1 0 Median 91355000 39348000 52007000 88478000 37928000 50550000 2877500 1420200 1457300 14468 1512 14865 38427;38428;38429 60345;60346;60347 60346 3 VPAVANYIMK NVYSVHFEKGHKAEKVPAVANYIMKIHNFT HKAEKVPAVANYIMKIHNFTSKCLYCNRYL K V P M K I 2 0 1 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 1 2 0 0 10 0 1104.6002 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 474 483 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 4.165E-05 97.798 2 0.96732 0.9624 8.4156 2 Median 0.96732 0.9624 8.4156 2 0 Median NaN NaN NaN 0 0 Median 33790000 18810000 14980000 33790000 18810000 14980000 0 0 0 14469 878 14866 38430;38431 60348;60349;60350 60350 692 3 VPDALVFTIQTR DLLDLGLEDLRMEQRVPDALVFTIQTRGTA EQRVPDALVFTIQTRGTAEPITVTIVPAYR R V P T R G 1 1 0 1 0 1 0 0 0 1 1 0 0 1 1 0 2 0 0 2 0 0 12 0 1358.7558 B3KN79;Q15646 B3KN79 132 143 OASL 2-5-oligoadenylate synthase-like protein yes no 2 0.0060504 49.5 2 1.0632 0.92292 4.4942 2 Median NaN NaN NaN 0 0 Median 1.0632 0.92292 4.4942 2 0 Median 5345500 2344400 3001200 0 0 0 5345500 2344400 3001200 14470 911 14867 38432;38433 60351;60352;60353 60352 3 VPDEEENEESDNEK YDSDPVKAWKEAQQKVPDEEENEESDNEKE KVPDEEENEESDNEKETEKSDSVTDSGPTF K V P E K E 0 0 2 2 0 0 6 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 14 0 1661.654 P11388 P11388 1097 1110 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.02505 32.523 1 0.85261 0.96553 NaN 1 Median 0.85261 0.96553 NaN 1 0 Median NaN NaN NaN 0 0 Median 1986900 1060900 926020 1986900 1060900 926020 0 0 0 14471 1471 14868 38434 60354 60354 1 VPDGKPENEFAFNAEFK PGYLEATVDWFRRYKVPDGKPENEFAFNAE DGKPENEFAFNAEFKDKDFAIDIIKSTHDH K V P F K D 2 0 2 1 0 0 3 1 0 0 0 2 0 3 2 0 0 0 0 1 0 0 17 1 1937.9159 V9HWB5;Q15181 V9HWB5 195 211 HEL-S-66p;PPA1 Inorganic pyrophosphatase yes no 3 0.0016362 56.851 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25545000 0 25545000 25545000 0 25545000 0 0 0 14472 1755 14869 38435 60355 60355 1 VPDNYGDEIAIELR GDLAPLWKGIGHVIKVPDNYGDEIAIELRS KVPDNYGDEIAIELRSSVGAPVEVTHNFQV K V P L R S 1 1 1 2 0 0 2 1 0 2 1 0 0 0 1 0 0 0 1 1 0 0 14 0 1602.789 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 383 396 UPF1 Regulator of nonsense transcripts 1 yes no 2 2.3835E-06 105.65 2 1.816 1.7849 NaN 1 Median 1.816 1.7849 NaN 1 0 Median NaN NaN NaN 0 0 Median 26114000 4244700 21869000 26114000 4244700 21869000 0 0 0 14473 231 14870 38436;38437 60356;60357 60357 2 VPDSTYEMIGGLDK PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQ KVPDSTYEMIGGLDKQIKEIKEVIELPVKH K V P D K Q 0 0 0 2 0 0 1 2 0 1 1 1 1 0 1 1 1 0 1 1 0 0 14 0 1523.7178 Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QQM1;J3QRW1;J3QSE0 Q59GS3 139 152 PSMC5 26S protease regulatory subunit 8 yes no 2 0.011829 40.475 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5945200 0 5945200 5945200 0 5945200 0 0 0 14474 608 14871 38438 60358 60358 461 1 VPDVQDGVR SIITYVSSLYDAMPRVPDVQDGVRANELQL YDAMPRVPDVQDGVRANELQLRWQEYRELV R V P V R A 0 1 0 2 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 3 0 0 9 0 983.50361 Q15149;E9PMV1 Q15149 402 410 PLEC Plectin yes no 2 0.012314 57.59 2 1.3193 1.3852 NaN 1 Median 1.3193 1.3852 NaN 1 0 Median NaN NaN NaN 0 0 Median 11843000 4719300 7124100 11843000 4719300 7124100 0 0 0 14475 1754 14872 38439;38440 60359;60360;60361 60359 3 VPEIEVTVEGPNNNNPQTSAVR LQSPKRPRSPGSNSKVPEIEVTVEGPNNNN VEGPNNNNPQTSAVRTPTQTNGSNVPFKPR K V P V R T 1 1 4 0 0 1 3 1 0 1 0 0 0 0 3 1 2 0 0 4 0 0 22 0 2363.1717 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 640 661 GTF2I General transcription factor II-I yes no 2 1.5034E-08 100.41 2 1.0564 1.0485 0.6146 2 Median 1.0564 1.0485 0.6146 2 0 Median NaN NaN NaN 0 0 Median 31410000 15182000 16227000 31410000 15182000 16227000 0 0 0 14476 789 14873 38441;38442 60362;60363;60364;60365;60366;60367;60368;60369 60365 8 VPELFANR DLYTLGCGEQGQLGRVPELFANRGGRQGLE EQGQLGRVPELFANRGGRQGLERLLVPKCV R V P N R G 1 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 944.50797 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 207 214 RCC1 Regulator of chromosome condensation yes no 2 0.0031812 97.602 2 1 0.74639 0.82782 7.2468 3 Plateau 0.72529 0.82274 1.4266 2 0 Median 0.86581 0.72658 NaN 1 0 Median 166400000 94971000 71432000 149510000 85672000 63841000 16891000 9299600 7591200 14477 550 14874 38443;38444;38445 60370;60371;60372;60373;60374;60375;60376 60372 7 VPEPNENVGDAVQTK TPSSTPIPALSPPTKVPEPNENVGDAVQTK VPEPNENVGDAVQTKLIMLVDDFYYGRDGG K V P T K L 1 0 2 1 0 1 2 1 0 0 0 1 0 0 2 0 1 0 0 3 0 0 15 0 1595.7791 Q7Z3K3 Q7Z3K3 450 464 POGZ Pogo transposable element with ZNF domain yes yes 2 3.1789E-10 122.39 2 2 1.1582 0.91546 10.616 3 Median 0.72229 0.77693 NaN 1 0 Median 1.16 0.93147 2.4524 2 0 Median 63424000 42747000 20676000 53592000 38159000 15433000 9831400 4587900 5243500 14478 1874 14875 38446;38447;38448;38449 60377;60378;60379;60380;60381 60378 5 VPEWVDTVK VRALAAFLKKSGKLKVPEWVDTVKLAKHKE KSGKLKVPEWVDTVKLAKHKELAPYDENWF K V P V K L 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 1 1 0 3 0 0 9 0 1071.5601 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 B0ZBD0 30 38 RPS19 40S ribosomal protein S19 yes no 2 0.0010561 90.601 2 2 1.1519 1.0584 13.55 4 Median 1.043 1.1993 7.5776 2 0 Median 1.2042 0.9628 3.2976 2 0 Median 403650000 197930000 205710000 382100000 188010000 194080000 21551000 9920900 11631000 14479 811 14876 38450;38451;38452;38453 60382;60383;60384;60385;60386;60387;60388 60385 7 VPFCPMVGSEVYSTEIK KTALALAIAQELGSKVPFCPMVGSEVYSTE FCPMVGSEVYSTEIKKTEVLMENFRRAIGL K V P I K K 0 0 0 0 1 0 2 1 0 1 0 1 1 1 2 2 1 0 1 3 0 0 17 0 1941.9216 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 91 107 RUVBL1 RuvB-like 1 yes no 2 7.8772E-05 70.685 1 1 0.82877 0.66062 NaN 1 Median NaN NaN NaN 0 0 Median 0.82877 0.66062 NaN 1 0 Median 6807000 3799400 3007600 0 0 0 6807000 3799400 3007600 14480 1076 14877 38454;38455 60389;60390 60390 830 2 VPFIHVGNQVVSELGPIVQFVK MSLVAEAFVSQIAGKVPFIHVGNQVVSELG NQVVSELGPIVQFVKAKGHSLSDGLEEVQK K V P V K A 0 0 1 0 0 2 1 2 1 2 1 1 0 2 2 1 0 0 0 6 0 0 22 0 2405.3471 C9JNK6;C9JAZ1;B7Z9F3;O75431 C9JNK6 16 37 MTX2 Metaxin-2 yes no 3 2.0725E-37 138.28 2 1.2116 1.3483 1.5942 2 Median 1.2116 1.3483 1.5942 2 0 Median NaN NaN NaN 0 0 Median 164020000 71898000 92120000 164020000 71898000 92120000 0 0 0 14481 1107 14878 38456;38457 60391;60392;60393;60394 60394 4 VPFPLTLR GGWINMTFSGFVTTKVPFPLTLRFKPMLQQ SGFVTTKVPFPLTLRFKPMLQQGIELLTLD K V P L R F 0 1 0 0 0 0 0 0 0 0 2 0 0 1 2 0 1 0 0 1 0 0 8 0 941.56984 Q9P0I2;C9JLM9 Q9P0I2 140 147 EMC3 ER membrane protein complex subunit 3 yes no 2 0.033405 57.177 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10771000 10771000 0 10771000 10771000 0 0 0 0 14482 2092 14879 38458 60395 60395 1 VPFSLLR ______________________________ ______________________________ R V P L R G 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 7 0 830.50142 V9HW43;P04792;B4DL87;F8WE04 V9HW43 6 12 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 1.3046E-06 153.67 2 1.4476 1.6292 0.55702 2 Median 1.4476 1.6292 0.55702 2 0 Median NaN NaN NaN 0 0 Median 182980000 76047000 106930000 182980000 76047000 106930000 0 0 0 14483 1443 14880 38459;38460 60396;60397;60398 60398 3 VPGLPTPIENMILR LSEAWRCWKANIPWKVPGLPTPIENMILRY KVPGLPTPIENMILRYVKAKADWWTNTAHY K V P L R Y 0 1 1 0 0 0 1 1 0 2 2 0 1 0 3 0 1 0 0 1 0 0 14 0 1548.8698 Q6P2Q9;I3L0J9 Q6P2Q9 728 741 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0067472 44.188 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4983500 4983500 0 4983500 4983500 0 0 0 0 14484 1854 14881 38461 60399 60399 1716 1 VPGVTAIDLDEDTCTFHIYGEDQDAVK LAIGTHGANIQQARKVPGVTAIDLDEDTCT TCTFHIYGEDQDAVKKARSFLEFAEDVIQV K V P V K K 2 0 0 5 1 1 2 2 1 2 1 1 0 1 1 0 3 0 1 3 0 0 27 0 3007.3757 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29;A0A087WWR6 X5DQX7 247 273 FMR1 Fragile X mental retardation protein 1 yes no 3 0.044061 23.246 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9310200 0 9310200 9310200 0 9310200 0 0 0 14485 1689 14882 38462 60400 60400 1 VPGVTAIELGEETCTFR LAIGTHGANIQQARKVPGVTAIELGEETCT GVTAIELGEETCTFRIYGETPEACRQARSY K V P F R I 1 1 0 0 1 0 3 2 0 1 1 0 0 1 1 0 3 0 0 2 0 0 17 0 1877.9193 P51116 P51116 257 273 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 3.1282E-09 107.17 1 0.74217 0.73642 NaN 1 Median 0.74217 0.73642 NaN 1 0 Median NaN NaN NaN 0 0 Median 15955000 9264500 6690900 15955000 9264500 6690900 0 0 0 14486 1593 14883 38463 60401;60402 60402 2 VPGVTDCVAEIQK VPEDEWQCEVCVAHKVPGVTDCVAEIQKNK HKVPGVTDCVAEIQKNKPYIRHEPIGYDRS K V P Q K N 1 0 0 1 1 1 1 1 0 1 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1414.7126 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 300 312 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00077554 79.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8045200 8045200 0 8045200 8045200 0 0 0 0 14487 1224 14884 38464 60403 60403 1 VPIWDQDIQFLPGSQK VFRAKNVRNDWLDLRVPIWDQDIQFLPGSQ PIWDQDIQFLPGSQKLVTCTGYHQVRVYDP R V P Q K L 0 0 0 2 0 3 0 1 0 2 1 1 0 1 2 1 0 1 0 1 0 0 16 0 1869.9625 Q6RFH5;E9PS41 Q6RFH5 182 197 WDR74 WD repeat-containing protein 74 yes no 2 4.6766E-34 159.52 2 2 0.87293 0.87589 6.6075 4 Linear 0.78027 0.85918 5.4613 2 0 Median 0.97438 0.78068 3.0567 2 0 Median 141450000 76469000 64976000 98754000 55151000 43603000 42691000 21318000 21373000 14488 1859 14885 38465;38466;38467;38468 60404;60405;60406;60407;60408 60404 5 VPKPEPIPEPK EPSVQEATSTSDILKVPKPEPIPEPKEPSP DILKVPKPEPIPEPKEPSPEKNSKKEKEKE K V P P K E 0 0 0 0 0 0 2 0 0 1 0 2 0 0 5 0 0 0 0 1 0 0 11 1 1229.702 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;E9PCT1;M0R088;B4DED5 A0A0S2Z4W1 247 257 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 3 0.021326 29.341 1 1.0279 1.1844 NaN 1 Median 1.0279 1.1844 NaN 1 0 Median NaN NaN NaN 0 0 Median 27532000 12700000 14832000 27532000 12700000 14832000 0 0 0 14489 570 14886 38469 60409 60409 1 VPLDEALQR QYLTGGLIEPDTPGRVPLDEALQRGTVDAR PDTPGRVPLDEALQRGTVDARTAQKLRDVG R V P Q R G 1 1 0 1 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 9 0 1039.5662 Q15149;D3DWL0;Q96IE3 Q15149 4543 4551 PLEC;PLEC1 Plectin yes no 2 0.0055856 66.351 2 1 1.7018 1.8557 8.1948 3 Median 1.6588 1.8655 0.75109 2 0 Median 1.9136 1.6192 NaN 1 0 Median 138080000 51078000 87001000 135120000 50057000 85061000 2961400 1021400 1940000 14490 1754 14887 38470;38471;38472 60410;60411;60412;60413;60414 60413 5 VPLDVACAR QLSTGGIVDPSKSHRVPLDVACARGCLDEE PSKSHRVPLDVACARGCLDEETSRALSAPR R V P A R G 2 1 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 9 0 999.51715 Q15149;D3DWL0 Q15149 3289 3297 PLEC;PLEC1 Plectin yes no 2 0.0066845 63.565 1 1 2.034 2.0316 16.615 2 Median 1.637 1.8064 NaN 1 0 Median 2.5273 2.2848 NaN 1 0 Median 57758000 19335000 38424000 55554000 18757000 36797000 2204000 577100 1626900 14491 1754 14888 38473;38474 60415;60416;60417 60416 3 VPLENNYLK VGNTSQDDIATILSKVPLENNYLKNVVKQI ATILSKVPLENNYLKNVVKQIYQDLFQDCH K V P L K N 0 0 2 0 0 0 1 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 9 0 1088.5866 Q8NG31;H0YCZ2 Q8NG31 2316 2324 CASC5 Protein CASC5 yes no 2 0.0036023 71.379 2 1 0.79014 0.85184 18.569 3 Median 0.7517 0.77356 13.633 2 0 Median 1.2846 1.0183 NaN 1 0 Median 46734000 25081000 21653000 41994000 23064000 18929000 4740600 2016500 2724100 14492 1928 14889 38475;38476;38477 60418;60419;60420 60418 3 VPLGTFR DPEQDRCEASEQKQKVPLGTFRKDMKTQEE EASEQKQKVPLGTFRKDMKTQEEKQKQLTE K V P F R K 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 1 0 0 7 0 788.45447 Q9Y6X9 Q9Y6X9 545 551 MORC2 MORC family CW-type zinc finger protein 2 yes yes 2 0.05173 57.471 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6746100 6746100 0 6746100 6746100 0 0 0 0 14493 2154 14890 38478 60421 60421 1 VPLHQVPYAVK ETELTDQAWLPAGVRVPLHQVPYAVKGCFR AGVRVPLHQVPYAVKGCFRFLPPAQVTVVG R V P V K G 1 0 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 0 1 3 0 0 11 0 1249.7183 Q9H6R4;A0A0A0MRW6 Q9H6R4 139 149 NOL6 Nucleolar protein 6 yes no 3 9.3609E-05 75.197 1 1 1.2635 1.181 2.3819 2 Median 1.0684 1.2011 NaN 1 0 Median 1.4944 1.1613 NaN 1 0 Median 134080000 61967000 72115000 118890000 56036000 62858000 15187000 5931100 9256100 14494 2038 14891 38479;38480 60422;60423;60424 60423 3 VPLLLHQK CPGETVVAEDPAGLKVPLLLHQKQALAWLL EDPAGLKVPLLLHQKQALAWLLWRESQKPQ K V P Q K Q 0 0 0 0 0 1 0 0 1 0 3 1 0 0 1 0 0 0 0 1 0 0 8 0 946.59639 A0A024R0F1;Q9UNY4 A0A024R0F1 568 575 TTF2 Transcription termination factor 2 yes no 2;3 0.0092129 85.89 4 1 0.70272 0.75383 26.598 5 Median 0.68621 0.73208 8.4562 4 0 Median 1.6507 1.3354 NaN 1 0 Median 153430000 91452000 61981000 150460000 90176000 60285000 2970900 1275300 1695600 14495 44 14892 38481;38482;38483;38484;38485 60425;60426;60427;60428;60429;60430 60429 6 VPLSAYER RMAPALSGANLTSPRVPLSAYERVSGRTSP ANLTSPRVPLSAYERVSGRTSPPLLDRARS R V P E R V 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 8 0 933.49198 A0A140VK53;Q9UQ35;O60382 A0A140VK53 2385 2392 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.04963 54.776 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14496 619 14893 38486 60431 60431 1 VPLSEFDFSWSK RPEELGFLRYLKQSKVPLSEFDFSWSKISD QSKVPLSEFDFSWSKISDIQSQLEKLIEKN K V P S K I 0 0 0 1 0 0 1 0 0 0 1 1 0 2 1 3 0 1 0 1 0 0 12 0 1440.6925 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254 Q4ZG72 422 433 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 4.5357E-08 115.18 2 2 1.1435 1.1138 23.222 4 Median 0.81025 0.91011 1.4265 2 0 Median 1.6036 1.3602 1.1246 2 0 Median 357480000 172460000 185020000 237590000 125790000 111810000 119890000 46672000 73216000 14497 303 14894 38487;38488;38489;38490 60432;60433;60434;60435;60436;60437;60438;60439 60433 8 VPLTSNDDEDEDK RISKQCKLMRLPFARVPLTSNDDEDEDKEK ARVPLTSNDDEDEDKEKMQCDNNIKSKTLP R V P D K E 0 0 1 4 0 0 2 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 13 0 1475.6264 Q562F6;B7Z7S9 Q562F6 159 171 SGOL2 Shugoshin-like 2 yes no 2 5.1231E-30 163.46 2 1 1.0963 1.2033 14.566 3 Median 1.0795 1.1196 10.186 2 0 Median 1.7595 1.3942 NaN 1 0 Median 67259000 31161000 36098000 62411000 29394000 33017000 4847800 1767600 3080200 14498 1795 14895 38491;38492;38493 60440;60441;60442;60443;60444 60441 5 VPNEEDPSLDRPFISEGTTLK LMVYICHNRTVIHHRVPNEEDPSLDRPFIS PSLDRPFISEGTTLKD______________ R V P L K D 0 1 1 2 0 0 3 1 0 1 2 1 0 1 3 2 2 0 0 1 0 0 21 1 2343.1594 F8VRH6;F8VVC4;H0YHS4;F8W0K6;F8W1R9;B4DY26;B4DXN7;Q5T7S2;P36897 F8VRH6 93 113 TGFBR1 Receptor protein serine/threonine kinase;TGF-beta receptor type-1 yes no 3 0.023827 29.84 1 1 1.5786 1.3611 NaN 1 Median NaN NaN NaN 0 0 Median 1.5786 1.3611 NaN 1 0 Median 10999000 743690 10256000 9000300 0 9000300 1999200 743690 1255500 14499 1048 14896 38494;38495 60445;60446 60445 2 VPNSNPPEYEFFWGLR ITDEFVKQKYLDYARVPNSNPPEYEFFWGL PNSNPPEYEFFWGLRSYYETSKMKVLKFAC R V P L R S 0 1 2 0 0 0 2 1 0 0 1 0 0 2 3 1 0 1 1 1 0 0 16 0 1950.9264 Q5H909;A0A024R9Y7;Q9UNF1;Q5H907;B4DX55 Q5H909 413 428 MAGED2 Melanoma-associated antigen D2 yes no 2 0.04493 39.266 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14500 292 14897 38496 60447 60447 1 VPPAINQFTQALDR IRLQRQRAILYKRLKVPPAINQFTQALDRQ KVPPAINQFTQALDRQTATQLLKLAHKYRP K V P D R Q 2 1 1 1 0 2 0 0 0 1 1 0 0 1 2 0 1 0 0 1 0 0 14 0 1568.8311 P62424;Q5T8U3 P62424 76 89 RPL7A 60S ribosomal protein L7a yes no 2 5.3108E-30 159.94 2 2 0.87469 1.0724 22.453 4 Linear 0.86542 1.0226 0.51811 2 0 Median 0.79647 0.69321 0.93587 2 0 Median 2086300000 1144300000 941990000 1705000000 930790000 774260000 381270000 213540000 167730000 14501 1648 14898 38497;38498;38499;38500 60448;60449;60450;60451;60452;60453;60454;60455;60456;60457;60458;60459;60460;60461;60462 60449 15 VPPFTFHVK PDHVVYARSKTAVYKVPPFTFHVKKIREGQ KTAVYKVPPFTFHVKKIREGQVEVLKATEM K V P V K K 0 0 0 0 0 0 0 0 1 0 0 1 0 2 2 0 1 0 0 2 0 0 9 0 1070.5913 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 291 299 PTRF Polymerase I and transcript release factor yes no 3 0.013825 40.994 2 0.97749 1.0057 4.8867 2 Median 0.97749 1.0057 4.8867 2 0 Median NaN NaN NaN 0 0 Median 44056000 22767000 21288000 44056000 22767000 21288000 0 0 0 14502 1017 14899 38501;38502 60463;60464;60465 60464 3 VPPFVDLNVNSNEGK NNLNLPQVALSFGFKVPPFVDLNVNSNEGK VPPFVDLNVNSNEGKQKKRGGGGGFGYQKT K V P G K Q 0 0 3 1 0 0 1 1 0 0 1 1 0 1 2 1 0 0 0 3 0 0 15 0 1627.8206 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254 Q4ZG72 493 507 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 2.5736E-10 118.61 2 2 1.25 1.2408 5.2713 4 Median 1.023 1.1916 1.9468 2 0 Median 1.5199 1.2978 2.5774 2 0 Median 704680000 334700000 369980000 547520000 271890000 275630000 157150000 62803000 94351000 14503 303 14900 38503;38504;38505;38506 60466;60467;60468;60469;60470;60471;60472;60473 60468 8 VPPPPPIAR FQRDYYDRMYSYPARVPPPPPIARAVVPSK YSYPARVPPPPPIARAVVPSKRQRVSGNTS R V P A R A 1 1 0 0 0 0 0 0 0 1 0 0 0 0 5 0 0 0 0 1 0 0 9 0 942.56509 G3V576;B2R603;G3V2Q1;A8K9A4;P07910;G3V555;G3V575;D3DPI2;G3V5V7;B4DQQ2;G3V4W0;B4DY08;B2R5W2;G3V4C1;B3KX96;G3V2D6 G3V4W0 130 138 HNRNPC;hCG_1641229 Heterogeneous nuclear ribonucleoproteins C1/C2 no no 2 0.000594 97.071 8 1.1337 1.3405 9.9667 7 Linear 1.1337 1.3405 9.9667 7 0 Linear NaN NaN NaN 0 0 Median 1324900000 641480000 683400000 1324900000 641480000 683400000 0 0 0 14504 837;781 14901 38507;38508;38509;38510;38511;38512;38513;38514 60474;60475;60476;60477;60478;60479;60480;60481;60482;60483;60484 60475 11 VPPSLLCEINTNAR SDGFIKMWKLKQDKKVPPSLLCEINTNARL KVPPSLLCEINTNARLTCLGVWLDKVADMK K V P A R L 1 1 2 0 1 0 1 0 0 1 2 0 0 0 2 1 1 0 0 1 0 0 14 0 1582.8137 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 282 295 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 0.00024365 77.593 2 1 0.8496 0.88778 18.973 3 Median 0.82609 0.84709 6.635 2 0 Median 1.3915 1.1647 NaN 1 0 Median 43880000 24846000 19034000 39950000 23110000 16840000 3930300 1735900 2194400 14505 580 14902 38515;38516;38517 60485;60486;60487;60488;60489;60490 60488 6 VPQFSFSR EPVGLMTGSGVVGVKVPQFSFSRLAGADVV SGVVGVKVPQFSFSRLAGADVVLGVEMTST K V P S R L 0 1 0 0 0 1 0 0 0 0 0 0 0 2 1 2 0 0 0 1 0 0 8 0 966.49232 Q53SY7;F8VPD4;P27708 Q53SY7 1189 1196 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.017078 60.682 1 0.93082 0.9538 NaN 1 Median 0.93082 0.9538 NaN 1 0 Median NaN NaN NaN 0 0 Median 6566300 4094900 2471400 6566300 4094900 2471400 0 0 0 14506 1259 14903 38518 60491 60491 1 VPQVSTPTLVEVSR EYGFQNALIVRYTRKVPQVSTPTLVEVSRS KVPQVSTPTLVEVSRSLGKVGTRCCTKPES K V P S R S 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 2 2 0 0 4 0 0 14 0 1510.8355 CON__P02769 CON__P02769 438 451 no no 2 0.0029928 63.727 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20461000 20461000 0 15302000 15302000 0 5158700 5158700 0 + 14507 1153 14904 38519;38520;38521 60492;60493;60494 60492 3 VPSENVLGEVGSGFK IKASNTAEVFFDGVRVPSENVLGEVGSGFK VPSENVLGEVGSGFKVAMHILNNGRFGMAA R V P F K V 0 0 1 0 0 0 2 3 0 0 1 1 0 1 1 2 0 0 0 3 0 0 15 0 1517.7726 Q53HR2;B4DEA8;P49748;B3KPA6;B3KPX1;A0A077H1I5 Q53HR2 317 331 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 9.8544E-05 82.543 1 0.86629 0.70847 NaN 1 Median NaN NaN NaN 0 0 Median 0.86629 0.70847 NaN 1 0 Median 5529100 2858900 2670100 0 0 0 5529100 2858900 2670100 14508 965 14905 38522 60495 60495 1 VPSFAAGR FVSPKEEVKLEAHIRVPSFAAGRVIGKGGK KLEAHIRVPSFAAGRVIGKGGKTVNELQNL R V P G R V 2 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 8 0 803.42899 O00425 O00425 494 501 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.03914 54.205 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5501500 0 5501500 5501500 0 5501500 0 0 0 14509 1364 14906 38523 60496 60496 1 VPSLTTVPQTQGQTTAQK RGLGATTKITTSHPRVPSLTTVPQTQGQTT LTTVPQTQGQTTAQKVSKKTGPRCSTAIAT R V P Q K V 1 0 0 0 0 4 0 1 0 0 1 1 0 0 2 1 5 0 0 2 0 0 18 0 1883.9953 A0A024RCS7;Q9BW19;B4E063 A0A024RCS7 69 86 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 3.8683E-06 84.605 2 2 1.2127 1.0939 25.306 4 Median 0.86925 0.90292 0.079335 2 0 Median 1.7308 1.3918 6.9939 2 0 Median 46816000 21698000 25118000 36931000 17257000 19674000 9885000 4441000 5444000 14510 371 14907 38524;38525;38526;38527 60497;60498;60499;60500;60501;60502 60500 6 VPSPPDEHQEAENAVSSGNR NHEKQESQDLRATAKVPSPPDEHQEAENAV DEHQEAENAVSSGNRDSKVPSEGKKSLYTD K V P N R D 2 1 2 1 0 1 3 1 1 0 0 0 0 0 3 3 0 0 0 2 0 0 20 0 2118.9566 Q9BXS6;A8K4B4 Q9BXS6 133 152 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 3 3.2553E-11 67.866 2 2 0.33533 0.28257 46.138 2 Median NaN NaN NaN 0 0 Median 0.33533 0.28257 46.138 2 0 Median 17884000 15663000 2221200 10954000 10954000 0 6929400 4708200 2221200 14511 2014 14908 38528;38529;38530;38531 60503;60504;60505;60506;60507;60508;60509 60504 7 VPSSLAYSLK TSSAVWNSPPLQGARVPSSLAYSLKKH___ LQGARVPSSLAYSLKKH_____________ R V P L K K 1 0 0 0 0 0 0 0 0 0 2 1 0 0 1 3 0 0 1 1 0 0 10 0 1063.5914 Q9NQS7 Q9NQS7 907 916 INCENP Inner centromere protein yes yes 2 0.00035253 89.08 2 2 1.4501 1.3957 25.406 4 Median 1.0065 1.1152 4.0785 2 0 Median 2.0958 1.7271 2.4755 2 0 Median 182540000 78007000 104540000 112060000 55273000 56790000 70480000 22733000 47747000 14512 2059 14909 38532;38533;38534;38535 60510;60511;60512;60513;60514;60515;60516;60517 60511 8 VPSVPETELTDQAWLPAGVR RIDAFLREVNQRVVRVPSVPETELTDQAWL ETELTDQAWLPAGVRVPLHQVPYAVKGCFR R V P V R V 2 1 0 1 0 1 2 1 0 0 2 0 0 0 3 1 2 1 0 3 0 0 20 0 2164.1164 Q9H6R4;A0A0A0MRW6 Q9H6R4 119 138 NOL6 Nucleolar protein 6 yes no 2 4.9857E-24 136.24 2 2 1.1233 1.1257 13.415 4 Median 0.90281 0.99123 11.181 2 0 Median 1.4056 1.2114 3.5563 2 0 Median 175860000 84983000 90879000 93006000 49617000 43389000 82857000 35366000 47490000 14513 2038 14910 38536;38537;38538;38539 60518;60519;60520;60521;60522;60523;60524;60525 60519 8 VPSVSSSALVSSLHLLK LQAIERYMKQAIVDKVPSVSSSALVSSLHL SVSSSALVSSLHLLKCSFDVVKRWVNEAQE K V P L K C 1 0 0 0 0 0 0 0 1 0 4 1 0 0 1 6 0 0 0 3 0 0 17 0 1722.988 Q9Y678 Q9Y678 152 168 COPG1 Coatomer subunit gamma-1 yes yes 3 0.0031101 31.7 2 1.9971 2.1106 9.1078 2 Median 1.9971 2.1106 9.1078 2 0 Median NaN NaN NaN 0 0 Median 55877000 20113000 35764000 55877000 20113000 35764000 0 0 0 14514 2151 14911 38540;38541 60526;60527;60528 60527 3 VPTANVSVVDLTCR VIPELNGKLTGMAFRVPTANVSVVDLTCRL RVPTANVSVVDLTCRLEKPAKYDDIKKVVK R V P C R L 1 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 2 0 0 4 0 0 14 0 1529.7872 V9HVZ4;P04406;Q2TSD0;Q0QET7;E7EUT5;A4UCT1;Q5ZEY3 V9HVZ4 235 248 HEL-S-162eP;GAPDH;GAPD Glyceraldehyde-3-phosphate dehydrogenase yes no 2 7.1561E-47 184.65 2 1 2.5916 3.0077 40.113 3 Plateau 2.5583 2.9407 7.1651 2 0 Median 1.7516 1.4761 NaN 1 0 Median 341050000 95594000 245460000 312760000 85528000 227230000 28287000 10066000 18221000 14515 1442 14912 38542;38543;38544 60529;60530;60531;60532;60533 60531 5 VPTEPPATSVAAR LQSSADTSSSRPGSRVPTEPPATSVAARSS SRVPTEPPATSVAARSSSLPSGRWGRPEAH R V P A R S 3 1 0 0 0 0 1 0 0 0 0 0 0 0 3 1 2 0 0 2 0 0 13 0 1294.6881 Q92610 Q92610 942 954 ZNF592 Zinc finger protein 592 yes yes 2 0.0090055 43.297 1 0.72504 0.71142 NaN 1 Median 0.72504 0.71142 NaN 1 0 Median NaN NaN NaN 0 0 Median 13835000 8247400 5587200 13835000 8247400 5587200 0 0 0 14516 1948 14913 38545 60534 60534 1 VPTLAVPAISLPDDVR SAEASEMPARTAPARVPTLAVPAISLPDDV PTLAVPAISLPDDVRRRLKDLERDSLTEKE R V P V R R 2 1 0 2 0 0 0 0 0 1 2 0 0 0 3 1 1 0 0 3 0 0 16 0 1661.9352 A0A024R7E3;P26358;K7EJL0;K7EMU8;K7EIZ6 A0A024R7E3 72 87 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0015438 62.338 2 0.35793 0.35869 8.2533 2 Median 0.35793 0.35869 8.2533 2 0 Median NaN NaN NaN 0 0 Median 34952000 26348000 8603900 34952000 26348000 8603900 0 0 0 14517 222 14914 38546;38547 60535;60536 60536 1 VPTLAVPAISLPDDVRR SAEASEMPARTAPARVPTLAVPAISLPDDV TLAVPAISLPDDVRRRLKDLERDSLTEKEC R V P R R R 2 2 0 2 0 0 0 0 0 1 2 0 0 0 3 1 1 0 0 3 0 0 17 1 1818.0363 A0A024R7E3;P26358;K7EJL0;K7EMU8;K7EIZ6 A0A024R7E3 72 88 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 3 0.00035622 40.962 1 2 0.87669 0.77402 4.1669 2 Median NaN NaN NaN 0 0 Median 0.87669 0.77402 4.1669 2 0 Median 27375000 20582000 6792700 12988000 12988000 0 14387000 7594500 6792700 14518 222 14915 38548;38549;38550 60537;60538;60539;60540;60541 60539 5 VPTPIQR LSYPVFKGIMKKGYKVPTPIQRKTIPVILD GIMKKGYKVPTPIQRKTIPVILDGKDVVAM K V P Q R K 0 1 0 0 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 0 7 0 809.47594 Q8TDD1;F8VRX4 Q8TDD1 118 124 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.010959 109.7 2 1.0435 1.1969 8.2083 2 Median 1.0435 1.1969 8.2083 2 0 Median NaN NaN NaN 0 0 Median 256070000 124880000 131180000 256070000 124880000 131180000 0 0 0 14519 1933 14916 38551;38552 60542;60543 60543 2 VPVDEFDGK EHLNCTISQVEPDIKVPVDEFDGKVTYGQK VEPDIKVPVDEFDGKVTYGQKRAAGGGSYK K V P G K V 0 0 0 2 0 0 1 1 0 0 0 1 0 1 1 0 0 0 0 2 0 0 9 0 1004.4815 F1T0B3;A0A087X2G1;A3RJH1;Q92499 F1T0B3 598 606 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0054512 66.692 2 1 1.1747 1.2601 17.431 3 Median 1.1225 1.1546 12.368 2 0 Median 1.8494 1.4992 NaN 1 0 Median 64906000 32139000 32767000 62135000 31302000 30833000 2770300 836870 1933400 14520 452 14917 38553;38554;38555 60544;60545;60546;60547;60548;60549 60545 6 VPVDVAYQR QIATGGIIDPVHSHRVPVDVAYQRGYFSEE PVHSHRVPVDVAYQRGYFSEEMNRVLADPS R V P Q R G 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 9 0 1045.5556 A0A075B730;A0A087X1U6;Q15149;D3DWL0 Q15149 3620 3628 EPPK1;PLEC;PLEC1 Plectin no no 2 2.4164E-05 114.65 2 2 2.0168 1.9886 3.448 4 Median 1.7207 1.9355 2.6462 2 0 Median 2.4038 2.0339 2.0091 2 0 Median 127740000 48240000 79496000 114750000 44668000 70081000 12988000 3571900 9415800 14521 1754;397 14918 38556;38557;38558;38559 60550;60551;60552;60553;60554;60555;60556;60557;60558 60554 9 VPVDVAYR QIATGGVIDPVHSHRVPVDVAYRRGYFDEE DPVHSHRVPVDVAYRRGYFDEEMNRVLADP R V P Y R R 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 8 0 917.49707 A0A075B730;A0A087X1U6;P58107;Q15149;D3DWL0 Q15149 2961 2968 EPPK1;PLEC;PLEC1 Epiplakin;Plectin no no 2 0.0092293 75.213 2 2.1949 2.5708 3.1537 2 Median 2.1949 2.5708 3.1537 2 0 Median NaN NaN NaN 0 0 Median 595060000 182160000 412900000 595060000 182160000 412900000 0 0 0 14522 1754;397;1622 14919 38560;38561 60559;60560 60560 2 VPVGDQPPDIEYQIK HVLNLTLIDLPGITKVPVGDQPPDIEYQIK VPVGDQPPDIEYQIKDMILQFISRESSLIL K V P I K D 0 0 0 2 0 2 1 1 0 2 0 1 0 0 3 0 0 0 1 2 0 0 15 0 1696.8672 Q59G96;P50570 Q59G96 132 146 DNM2 Dynamin-2 yes no 2 0.0013924 57.164 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14523 1591 14920 38562;38563 60561;60562 60561 2 VPVHDVTDASK NVTYGGHQVPGSPFKVPVHDVTDASKVKCS SPFKVPVHDVTDASKVKCSGPGLSPGMVRA K V P S K V 1 0 0 2 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 3 0 0 11 0 1166.5932 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1440 1450 FLNA;FLJ00119 Filamin-A yes no 3 0.0030911 49.081 1 1.1649 1.2586 NaN 1 Median 1.1649 1.2586 NaN 1 0 Median NaN NaN NaN 0 0 Median 21908000 9989700 11918000 21908000 9989700 11918000 0 0 0 14524 1504 14921 38564 60563;60564 60564 2 VPVLDEGLTSVETYTPAIR APSVYEGKIFTQKSKVPVLDEGLTSVETYT DEGLTSVETYTPAIRANDNKSMADVLGDGG K V P I R A 1 1 0 1 0 0 2 1 0 1 2 0 0 0 2 1 3 0 1 3 0 0 19 0 2059.0837 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1428 1446 AHCTF1 Protein ELYS yes no 2 2.2607E-23 119.69 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47081000 29518000 17563000 29518000 29518000 0 17563000 0 17563000 14525 1945 14922 38565;38566;38567 60565;60566;60567 60566 3 VPVLQLDSGNYLFSTSAICR VGPEDCVVPFLTRPKVPVLQLDSGNYLFST LDSGNYLFSTSAICRYFFLLSGWEQDDLTN K V P C R Y 1 1 1 1 1 1 0 1 0 1 3 0 0 1 1 3 1 0 1 2 0 0 20 0 2239.1307 A8K492;P56192;A0A024RBA2;F5H2V6;F8VS26;F8W0M7;F8W0S4;F8VZZ9 A8K492 48 67 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.00062509 50.562 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3489400 0 3489400 3489400 0 3489400 0 0 0 14526 732 14923 38568;38569 60568;60569 60568 2 VPVSVNLLSK LLPSLIGRHFYQRKKVPVSVNLLSKNLSRE YQRKKVPVSVNLLSKNLSREINDCIGGTVL K V P S K N 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 2 0 0 0 3 0 0 10 0 1054.6386 O76021;J3QSV6;A0PJ61;Q32Q62;A0PJ87;I3L3C4 O76021 179 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.7051E-06 111.46 2 2 0.68391 0.67055 14.516 4 Median 0.6524 0.75874 1.5116 2 0 Median 0.71825 0.59079 1.9468 2 0 Median 560910000 337460000 223450000 493500000 299230000 194270000 67405000 38228000 29177000 14527 1415 14924 38570;38571;38572;38573 60570;60571;60572;60573;60574;60575;60576;60577 60571 8 VPWFDQQNGR RNGSSLAKIYTEAKKVPWFDQQNGRTYLKY TEAKKVPWFDQQNGRTYLKYSIKALVQNDT K V P G R T 0 1 1 1 0 2 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 10 0 1245.5891 Q92522 Q92522 77 86 H1FX Histone H1x yes yes 2 0.0008169 89.355 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18247000 18247000 0 18247000 18247000 0 0 0 0 14528 1946 14925 38574;38575 60578;60579;60580 60580 3 VPYFNAPVYLENK CEDDIVCKCTTDENKVPYFNAPVYLENKEQ NKVPYFNAPVYLENKEQIGKVDEIFGQLRD K V P N K E 1 0 2 0 0 0 1 0 0 0 1 1 0 1 2 0 0 0 2 2 0 0 13 0 1552.7926 A0A024RDJ3;Q9NY12 A0A024RDJ3 95 107 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2 1.1931E-23 156.58 2 2 0.66151 0.6359 40.748 4 Median 0.80107 0.90081 0.78045 2 0 Median 0.54561 0.44491 2.0439 2 0 Median 219710000 129720000 89988000 164300000 93038000 71262000 55410000 36684000 18726000 14529 387 14926 38576;38577;38578;38579 60581;60582;60583;60584;60585;60586;60587;60588;60589 60587 9 VQADVPPEILNNVGALHFR ALSAYGTATRILQEKVQADVPPEILNNVGA VPPEILNNVGALHFRLGNLGEAKKYFLASL K V Q F R L 2 1 2 1 0 1 1 1 1 1 2 0 0 1 2 0 0 0 0 3 0 0 19 0 2088.1116 A8K6X9;Q6PD62 A8K6X9 445 463 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 1.3561E-08 91.401 2 2 1.6587 1.5244 10.219 4 Median 1.5768 1.6857 5.3027 2 0 Median 1.7505 1.424 0.70387 2 0 Median 102110000 40182000 61928000 78707000 32110000 46597000 23402000 8071200 15331000 14530 765 14927 38580;38581;38582;38583 60590;60591;60592;60593;60594;60595;60596;60597 60592 8 VQAGAYPTEK QVMAVTAQVKSLTQKVQAGAYPTEKGLSFL SLTQKVQAGAYPTEKGLSFLEVKDQLLLMY K V Q E K G 2 0 0 0 0 1 1 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 10 0 1062.5346 Q8NEJ9;H0YJ17;G3V4G1 Q8NEJ9 39 48 NGDN Neuroguidin yes no 2 0.00022929 93.111 2 2 0.90817 0.86889 10.315 3 Plateau 0.81205 0.8745 NaN 1 0 Median 0.94163 0.74222 5.7852 2 0 Median 59822000 25718000 34104000 46115000 18855000 27261000 13707000 6863200 6843700 14531 1927 14928 38584;38585;38586;38587 60598;60599;60600;60601;60602;60603;60604;60605 60599 8 VQAGDVITIDK YDLGTKMIESLTKDKVQAGDVITIDKATGK TKDKVQAGDVITIDKATGKISKLGRSFTRA K V Q D K A 1 0 0 2 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1157.6292 Q9Y230;B3KNL2;M0R0Y3;B4DW30 Q9Y230 187 197 RUVBL2 RuvB-like 2 yes no 2 2.4004E-08 121.6 2 2 1.017 0.9529 4.9292 4 Median 0.84967 0.9529 1.3111 2 0 Median 1.235 0.98711 7.6637 2 0 Median 172540000 93731000 78812000 148240000 83196000 65048000 24299000 10535000 13764000 14532 2120 14929 38588;38589;38590;38591 60606;60607;60608;60609;60610;60611;60612;60613;60614 60609 9 VQALEEANNDLENK TMQELNSRLASYLDKVQALEEANNDLENKI KVQALEEANNDLENKIQDWYDKKGPAAIQK K V Q N K I 2 0 3 1 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 14 0 1585.7584 CON__P35527;P35527 CON__P35527 171 184 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.4071E-42 166.14 6 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1810200000 1810200000 0 1567300000 1567300000 0 242910000 242910000 0 + 14533 1165 14930 38592;38593;38594;38595;38596;38597;38598;38599 60615;60616;60617;60618;60619;60620;60621;60622;60623;60624;60625;60626;60627;60628;60629 60615 15 VQAQAEQGQQELK ALGTERTTLEGHLAKVQAQAEQGQQELKNL AKVQAQAEQGQQELKNLRACVLELEERLST K V Q L K N 2 0 0 0 0 5 2 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1455.7318 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 195 207 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 7.4146E-24 159.09 2 2 1.0704 1.0363 24.535 4 Median 0.78306 0.81966 10.948 2 0 Median 1.441 1.2348 2.574 2 0 Median 38253000 21853000 16401000 34799000 20641000 14159000 3454000 1212000 2242000 14534 371 14931 38600;38601;38602;38603 60630;60631;60632;60633;60634;60635;60636 60631 7 VQAQVIQETIVPK MQQQQQTTQQQLPQKVQAQVIQETIVPKEP QKVQAQVIQETIVPKEPPPEFEFIADPPSI K V Q P K E 1 0 0 0 0 3 1 0 0 2 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1451.8348 A0A024R1K8;Q15459;B4E091 A0A024R1K8 132 144 SF3A1 Splicing factor 3A subunit 1 yes no 2 0.00019263 89.548 2 1.6814 1.723 NaN 1 Median 1.6814 1.723 NaN 1 0 Median NaN NaN NaN 0 0 Median 24016000 5789700 18227000 24016000 5789700 18227000 0 0 0 14535 79 14932 38604;38605 60637;60638 60638 2 VQAVVAVAR KHEAIETDIAAYEERVQAVVAVARELEAEN AAYEERVQAVVAVARELEAENYHDIKRITA R V Q A R E 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 9 0 911.55525 D6W5C0;B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1 D6W5C0 392 400 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0006569 96.19 2 1.3441 1.5565 NaN 1 Median 1.3441 1.5565 NaN 1 0 Median NaN NaN NaN 0 0 Median 67145000 30923000 36222000 67145000 30923000 36222000 0 0 0 14536 415 14933 38606;38607 60639;60640 60640 2 VQAYEEPSVASSPNGK FCCPWEQLTQDWESRVQAYEEPSVASSPNG QAYEEPSVASSPNGKESDLRRSEVPCAPMP R V Q G K E 2 0 1 0 0 1 2 1 0 0 0 1 0 0 2 3 0 0 1 2 0 0 16 0 1661.7897 Q96F88;Q99575 Q96F88 719 734 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.010367 45.257 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14537 1965 14934 38608 60641 60641 1 VQDDEVGDGTTSVTVLAAELLR GVDNPAAKVLVDMSRVQDDEVGDGTTSVTV DGTTSVTVLAAELLREAESLIAKKIHPQTI R V Q L R E 2 1 0 3 0 1 2 2 0 0 3 0 0 0 0 1 3 0 0 4 0 0 22 0 2287.1543 F8VQ14;F5GWF6;V9HW96;P78371 F8VQ14 90 111 CCT2;HEL-S-100n T-complex protein 1 subunit beta yes no 2 6.7716E-05 38.511 1 2.978 3.0714 NaN 1 Median 2.978 3.0714 NaN 1 0 Median NaN NaN NaN 0 0 Median 19911000 3557300 16354000 19911000 3557300 16354000 0 0 0 14538 1255 14935 38609 60642 60642 1 VQDGLSDIAEK TKEKSKHLKTKTCKKVQDGLSDIAEKFLKK TCKKVQDGLSDIAEKFLKKDQSDETSEDDK K V Q E K F 1 0 0 2 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 11 0 1173.5877 A4LAA3;P46100;A0A096LNW1;A0A096LNL9;B7Z1D8 A4LAA3 957 967 ATRX Transcriptional regulator ATRX yes no 2 3.7889E-09 117.02 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23112000 0 23112000 21084000 0 21084000 2027600 0 2027600 14539 672 14936 38610;38611;38612 60643;60644;60645 60644 3 VQDLFCSVGLNVNNPHFLIMQGR RNKYLINGVNANNTRVQDLFCSVGLNVNNP GLNVNNPHFLIMQGRITKVLNMKPPEILSM R V Q G R I 0 1 3 1 1 2 0 2 1 1 3 0 1 2 1 1 0 0 0 3 0 0 23 0 2657.3206 A0A024R158;O95347;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 127 149 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 7.4058E-60 166.25 2 5 1.2708 1.3849 26.232 6 Median 1.2639 1.3849 1.3182 2 0 Median 1.5835 1.334 33.849 4 0 Median 230900000 86481000 144420000 90646000 37107000 53539000 140250000 49374000 90877000 14540 69 14937;14938 38613;38614;38615;38616;38617;38618;38619 60646;60647;60648;60649;60650;60651;60652;60653;60654;60655;60656 60655 45 11 VQDQDLPNTPHSK EVEENRIDVEILRMKVQDQDLPNTPHSKAV MKVQDQDLPNTPHSKAVYKILQGNENGNFI K V Q S K A 0 0 1 2 0 2 0 0 1 0 1 1 0 0 2 1 1 0 0 1 0 0 13 0 1477.7161 Q9HB00;Q08554 Q9HB00 377 389 DSC1 Desmocollin-1 yes no 2 0.0068696 54.776 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6735400 6735400 0 6735400 6735400 0 0 0 0 14541 1693 14939 38620;38621 60657;60658 60657 2 VQDTSNTGLGEDIIHQLSK KESEDSDEENDFTEKVQDTSNTGLGEDIIH SNTGLGEDIIHQLSKSE_____________ K V Q S K S 0 0 1 2 0 2 1 2 1 2 2 1 0 0 0 2 2 0 0 1 0 0 19 0 2054.028 A8K330;Q8IWA0;Q05D27 A8K330 792 810 WDR75 WD repeat-containing protein 75 yes no 2;3 4.772E-17 103.9 3 2 1.228 1.2032 1.6154 4 Median 1.0495 1.2132 2.5276 2 0 Median 1.4092 1.2032 0.86991 2 0 Median 593410000 283990000 309420000 435330000 218700000 216630000 158080000 65296000 92788000 14542 716 14940 38622;38623;38624;38625;38626 60659;60660;60661;60662;60663;60664;60665;60666 60661 8 VQEAIIHFR ______________________________ LRNMGRVQEAIIHFREAIRLAPCRLDCYEG R V Q F R E 1 1 0 0 0 1 1 0 1 2 0 0 0 1 0 0 0 0 0 1 0 0 9 0 1111.6138 H0YIW2;B3KMP2;Q2M2R1;Q4KMX6;A8KAQ7;A5D8X2;A0A024RBJ3;Q9UJX3 H0YIW2 14 22 ANAPC7 Anaphase-promoting complex subunit 7 yes no 3 0.007505 48.283 2 1.1584 1.1663 8.001 2 Median 1.1584 1.1663 8.001 2 0 Median NaN NaN NaN 0 0 Median 16843000 6729400 10114000 16843000 6729400 10114000 0 0 0 14543 341 14941 38627;38628 60667;60668;60669 60668 3 VQEAINSLGGSVFPK TATLTAPEFPEFATKVQEAINSLGGSVFPK VQEAINSLGGSVFPKLNWSAPRDAYWIAMN K V Q P K L 1 0 1 0 0 1 1 2 0 1 1 1 0 1 1 2 0 0 0 2 0 0 15 0 1544.8199 O75794;X6RKY7;X6RA30 O75794 90 104 CDC123 Cell division cycle protein 123 homolog yes no 2 4.2493E-10 114.24 1 2 2.0091 1.6299 32.65 3 Median 2.8267 2.7701 NaN 1 0 Median 1.9677 1.578 4.5764 2 0 Median 28293000 8133900 20159000 21229000 5728600 15501000 7063400 2405300 4658100 14544 1413 14942 38629;38630;38631 60670;60671;60672 60670 3 VQEFEHVNGR HVLTRIGVMSLIRKKVQEFEHVNGRWSMPE LIRKKVQEFEHVNGRWSMPELAEVEENKKM K V Q G R W 0 1 1 0 0 1 2 1 1 0 0 0 0 1 0 0 0 0 0 2 0 0 10 0 1213.584 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1499 1508 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 4.3219E-08 114.84 5 0.69656 0.80352 16.147 3 Median 0.69656 0.80352 16.147 3 0 Median NaN NaN NaN 0 0 Median 147820000 89446000 58379000 147820000 89446000 58379000 0 0 0 14545 515 14943 38632;38633;38634;38635;38636 60673;60674;60675;60676;60677 60676 5 VQEHEDSGDSEVENEAK ENDEDALLRRLRGPRVQEHEDSGDSEVENE EHEDSGDSEVENEAKGNFPPQKKPVWVDEE R V Q A K G 1 0 1 2 0 1 5 1 1 0 0 1 0 0 0 2 0 0 0 2 0 0 17 0 1900.7923 B2RAX6;Q9Y5J1 B2RAX6 91 107 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2;3 3.7823E-45 169.09 4 2 1.4549 1.4021 9.6534 6 Median 1.4117 1.4474 5.6955 4 0 Median 1.5978 1.2741 10.336 2 0 Median 90122000 34970000 55152000 78798000 30600000 48198000 11324000 4370400 6953600 14546 876 14944 38637;38638;38639;38640;38641;38642 60678;60679;60680;60681;60682;60683;60684;60685;60686 60678 9 VQELETSLAELR QVHTLREEKECSMSRVQELETSLAELRNQM MSRVQELETSLAELRNQMAEPPPPEPPAGP R V Q L R N 1 1 0 0 0 1 3 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1386.7355 Q08379;B7ZC06 Q08379 432 443 GOLGA2 Golgin subfamily A member 2 yes no 2 0.0057556 63.073 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14547 1692 14945 38643 60687 60687 1 VQELQQGAFGR QRGGLKQLSARNRRRVQELQQGAFGRGARS NRRRVQELQQGAFGRGARSKKGKMRKRM__ R V Q G R G 1 1 0 0 0 3 1 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 11 0 1231.6309 Q8TDD1 Q8TDD1 858 868 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 7.0847E-10 126.82 1 2 1.4042 1.3073 4.4236 2 Median 1.1971 1.267 NaN 1 0 Median 1.6471 1.3488 NaN 1 0 Median 61977000 28645000 33332000 41146000 19749000 21397000 20831000 8895600 11935000 14548 1933 14946 38644;38645;38646 60688;60689;60690;60691;60692 60689 5 VQENCIDLVGR LLPRLTPILKNRHEKVQENCIDLVGRIADR RHEKVQENCIDLVGRIADRGAEYVSAREWM K V Q G R I 0 1 1 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1301.6398 O75533;H7C341 O75533 1031 1041 SF3B1 Splicing factor 3B subunit 1 yes no 2 0.0045211 66.056 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3618700 0 3618700 3618700 0 3618700 0 0 0 14549 1408 14947 38647 60693 60693 1 VQENSAYICSR KVANYCRQVQQLLGKVQENSAYICSRRQRV LLGKVQENSAYICSRRQRVSFGVSEQQAVE K V Q S R R 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 2 0 0 1 1 0 0 11 0 1325.6034 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7 Q9Y3T9 577 587 NOC2L Nucleolar complex protein 2 homolog yes no 2 1.7646E-12 142.83 2 2 1.0021 1.0463 17.943 3 Median 0.89564 0.92572 23.322 2 0 Median 1.2611 1.0463 NaN 1 0 Median 70950000 36918000 34033000 65217000 34353000 30864000 5733600 2564900 3168700 14550 2139 14948 38648;38649;38650;38651 60694;60695;60696;60697;60698 60694 5 VQEQLGNDVVEK QKIKIGVVGGSDFEKVQEQLGNDVVEKYDY FEKVQEQLGNDVVEKYDYVFPENGLVAYKD K V Q E K Y 0 0 1 1 0 2 2 1 0 0 1 1 0 0 0 0 0 0 0 3 0 0 12 0 1356.6885 B7Z3M6;H3BPH4;H3BV55;B2R6D4;A0A0S2Z4J6;O15305 B7Z3M6 52 63 PMM2 Phosphomannomutase;Phosphomannomutase 2 yes no 2 0.00064209 77.744 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14551 564 14949 38652;38653 60699;60700 60700 2 VQESADELQK TQGLIFVVDSNDRERVQESADELQKMEDEL NDRERVQESADELQKMEDELRDAVLLVFAN R V Q Q K M 1 0 0 1 0 2 2 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1145.5564 C9J1Z8;A4D0Z3;B4DLJ3;P84085 C9J1Z8 100 109 ARF5 ADP-ribosylation factor 5 yes no 2 0.029831 42.869 1 0.89841 0.96557 NaN 1 Median 0.89841 0.96557 NaN 1 0 Median NaN NaN NaN 0 0 Median 39862000 19760000 20102000 39862000 19760000 20102000 0 0 0 14552 660 14950 38654 60701 60701 1 VQEYGELDAK KKFRGKPTEASIEARVQEYGELDAKDYIPG SIEARVQEYGELDAKDYIPGAEVLEVEKEE R V Q A K D 1 0 0 1 0 1 2 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1150.5506 E7EW05;B4DT66;Q9NVU7 E7EW05 427 436 SDAD1 Protein SDA1 homolog yes no 2 0.045468 47.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1430400 1430400 0 0 0 0 1430400 1430400 0 14553 1032 14951 38655 60702 60702 1 VQFDGTNSAFK YNVSTTPYLQSVKKKVQFDGTNSAFKELKF VKKKVQFDGTNSAFKELKFLTPVRRSRRLQ K V Q F K E 1 0 1 1 0 1 0 1 0 0 0 1 0 2 0 1 1 0 0 1 0 0 11 0 1212.5775 B2RMQ4;Q8WWK9 B2RMQ4 606 616 CKAP2 Cytoskeleton-associated protein 2 yes no 2 4.6535E-10 130.66 2 3 0.72509 0.78313 12.896 3 Median 0.71563 0.77497 1.4798 2 0 Median 1.1899 0.96822 NaN 1 0 Median 92816000 50129000 42687000 81530000 46539000 34992000 11286000 3590500 7695700 14554 895 14952 38656;38657;38658;38659;38660 60703;60704;60705;60706;60707;60708;60709;60710 60705 8 VQFHLK FVVTLDEVELIHFERVQFHLKNFDMVIVYK EVELIHFERVQFHLKNFDMVIVYKDYSKKV R V Q L K N 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 6 0 770.44391 Q9Y5B9 Q9Y5B9 848 853 SUPT16H FACT complex subunit SPT16 yes yes 2 0.058999 69.39 1 1.0469 0.88715 NaN 1 Median NaN NaN NaN 0 0 Median 1.0469 0.88715 NaN 1 0 Median 59664000 29365000 30298000 0 0 0 59664000 29365000 30298000 14555 2148 14953 38661 60711 60711 1 VQFLEQQNK QIKTLNNKFASFIDKVQFLEQQNKVLDTKW ASFIDKVQFLEQQNKVLDTKWTLLQEQGTK K V Q N K V 0 0 1 0 0 3 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1132.5877 B2R853;B4DRY0 B2R853 181 189 no no 2 1.6711E-24 163.77 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46049000 46049000 0 46049000 46049000 0 0 0 0 + 14556 859 14954 38662;38663 60712;60713 60713 2 VQFWDSATGTLVK FLSDGTIISVDSAGKVQFWDSATGTLVKSH GKVQFWDSATGTLVKSHLIANADVQSIAVA K V Q V K S 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 1 2 1 0 2 0 0 13 0 1450.7456 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4;A0A0J9YWK2;J3KSI1;A0A0J9YX18 Q969X6 218 230 CIRH1A Cirhin yes no 2 0.00015631 86.014 2 1 0.97299 0.90545 7.8098 2 Median 0.79541 0.8568 NaN 1 0 Median 1.1902 0.95686 NaN 1 0 Median 92985000 30203000 62783000 71284000 20245000 51039000 21701000 9957500 11744000 14557 1955 14955 38664;38665;38666 60714;60715;60716;60717 60715 4 VQGGALEDSQLVAGVAFK MLDDLLQLKMIGIKKVQGGALEDSQLVAGV GALEDSQLVAGVAFKKTFSYAGFEMQPKKY K V Q F K K 3 0 0 1 0 2 1 3 0 0 2 1 0 1 0 1 0 0 0 3 0 0 18 0 1787.9418 Q6IBT3;Q53HV2;Q99832;B7Z7I4;B7Z1C9 Q6IBT3 200 217 CCT7 T-complex protein 1 subunit eta yes no 2 1.9985E-11 93.011 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16303000 0 16303000 14570000 0 14570000 1733300 0 1733300 14558 1791 14956 38667;38668;38669;38670 60718;60719;60720;60721 60718 4 VQGLLEEEAAAR LGGSGGAGGRLTRGRVQGLLEEEAAARGRL RGRVQGLLEEEAAARGRLERTRLGALALPR R V Q A R G 3 1 0 0 0 1 3 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1284.6674 Q6SPF0;E9PIW9 Q6SPF0 273 284 SAMD1 Atherin yes no 2 1.5157E-05 126.71 2 2 1.0917 1.0447 14.09 4 Median 0.82324 0.92573 0.85342 2 0 Median 1.4462 1.1811 1.1245 2 0 Median 202040000 103400000 98643000 176120000 91881000 84242000 25919000 11518000 14401000 14559 1861 14957 38671;38672;38673;38674 60722;60723;60724;60725;60726;60727;60728;60729 60725 8 VQGSDSDEEVVVATTR KEKVEFGVLVSFAYKVQGSDSDEEVVVATT QGSDSDEEVVVATTRIETMLGDVAVAVHPK K V Q T R I 1 1 0 2 0 1 2 1 0 0 0 0 0 0 0 2 2 0 0 4 0 0 16 0 1690.801 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 522 537 VARS Valine--tRNA ligase yes no 2 9.5502E-25 143.98 2 1 0.87866 0.932 36.852 3 Plateau 0.87277 0.92223 12.939 2 0 Median 0.5893 0.49695 NaN 1 0 Median 66435000 38820000 27614000 63403000 36993000 26410000 3031900 1827900 1204000 14560 363 14958 38675;38676;38677 60730;60731;60732;60733;60734 60731 5 VQGVFQR YSFKKDEIENSIVHRVQGVFQRASAKWKDD IENSIVHRVQGVFQRASAKWKDDVQLWLSY R V Q Q R A 0 1 0 0 0 2 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 0 832.45554 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 92 98 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.02673 84.359 2 1.3623 1.1276 2.7295 2 Median NaN NaN NaN 0 0 Median 1.3623 1.1276 2.7295 2 0 Median 20053000 7784900 12269000 0 0 0 20053000 7784900 12269000 14561 925 14959 38678;38679 60735;60736;60737 60737 3 VQIFTADLSEIPR PPPYKHIKVNRPIGRVQIFTADLSEIPRCN GRVQIFTADLSEIPRCNCKATDENPCGIDS R V Q P R C 1 1 0 1 0 1 1 0 0 2 1 0 0 1 1 1 1 0 0 1 0 0 13 0 1487.7984 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q96DQ7 B2RWP5 1613 1625 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.00015608 85.958 2 2 1.2171 1.0174 41.005 3 Median 0.54553 0.54733 NaN 1 0 Median 1.3038 1.0994 10.953 2 0 Median 19448000 11715000 7732800 11331000 8268300 3063100 8116400 3446800 4669600 14562 898 14960 38680;38681;38682;38683 60738;60739;60740;60741 60739 4 VQISPDSGGLPER GGEQINKIQQDSGCKVQISPDSGGLPERSV CKVQISPDSGGLPERSVSLTGAPESVQKAK K V Q E R S 0 1 0 1 0 1 1 2 0 1 1 0 0 0 2 2 0 0 0 1 0 0 13 0 1353.6888 A0A087WTP3;Q92945;B4DV73;M0QYH3;M0QXW7 A0A087WTP3 178 190 KHSRP Far upstream element-binding protein 2 yes no 2 0.00013633 81.017 1 2.0936 2.1252 NaN 1 Median 2.0936 2.1252 NaN 1 0 Median NaN NaN NaN 0 0 Median 15063000 4927100 10136000 15063000 4927100 10136000 0 0 0 14563 403 14961 38684 60742 60742 1 VQIYTADISEIPK PPPYKHIKVNKPYGKVQIYTADISEIPKCN GKVQIYTADISEIPKCNCKPTDENPCGFDS K V Q P K C 1 0 0 1 0 1 1 0 0 3 0 1 0 0 1 1 1 0 1 1 0 0 13 0 1475.7872 O96028 O96028 1003 1015 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 1.8605E-05 99.343 2 2 0.82703 0.91676 22.39 3 Median 0.82584 0.90453 1.8999 2 0 Median 1.6693 1.3321 NaN 1 0 Median 120330000 64473000 55858000 92448000 49034000 43415000 27883000 15440000 12443000 14564 1435 14962 38685;38686;38687;38688 60743;60744;60745;60746;60747;60748;60749 60744 7 VQLAELIDCLDK TENENEKKIWYYSTKVQLAELIDCLDKDYW STKVQLAELIDCLDKDYWEAELCKILEEMR K V Q D K D 1 0 0 2 1 1 1 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 12 0 1415.733 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 359 370 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0003692 72.006 2 2 0.66424 0.67507 41.723 3 Median 0.65375 0.66983 1.1022 2 0 Median 1.7254 1.3796 NaN 1 0 Median 23211000 11769000 11442000 17794000 10596000 7197700 5417200 1172900 4244300 14565 1224 14963 38689;38690;38691;38692 60750;60751;60752;60753;60754;60755;60756 60752 7 VQLAMQTYEMVDK IQNAYSKCKEYSDDKVQLAMQTYEMVDKHI DKVQLAMQTYEMVDKHIRRLDADLARFEAD K V Q D K H 1 0 0 1 0 2 1 0 0 0 1 1 2 0 0 0 1 0 1 2 0 0 13 0 1554.7422 E9PEN0;B7Z6R2;A0A1B0GW41;Q8WYH8;A4KYM7;Q9UNL4;B4DDF2 E9PEN0 83 95 ING5;ING4 Inhibitor of growth protein 5;Inhibitor of growth protein 4;Inhibitor of growth protein yes no 2 0.0010876 56.551 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4855500 0 4855500 4855500 0 4855500 0 0 0 14566 633 14964 38693;38694 60757;60758 60757 492;493 2 VQLDLAETDLSQGVAR SNSSFMSRERELLGKVQLDLAETDLSQGVA QLDLAETDLSQGVARWYDLMDNKDKGSS__ K V Q A R W 2 1 0 2 0 2 1 1 0 0 3 0 0 0 0 1 1 0 0 2 0 0 16 0 1713.8897 B3KY56;B3KMV5;A0A024RB17;A0A024RB16;Q9BSJ8 B3KY56 1030 1045 FAM62A;ESYT1 Extended synaptotagmin-1 yes no 2 0.0001418 83.204 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14567 320 14965 38695 60759 60759 1 VQLDVFTLSGFR QALKIVDFSYSVDLRVQLDVFTLSGFRTVQ DLRVQLDVFTLSGFRTVQILEGQKILANCS R V Q F R T 0 1 0 1 0 1 0 1 0 0 2 0 0 2 0 1 1 0 0 2 0 0 12 0 1380.7402 O60566 O60566 920 931 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.010019 46.706 1 1.7966 1.5238 NaN 1 Median NaN NaN NaN 0 0 Median 1.7966 1.5238 NaN 1 0 Median 5110600 1785100 3325400 0 0 0 5110600 1785100 3325400 14568 1396 14966 38696 60760 60760 1 VQLFEDPTVDK NCPECGTPLRKSNFRVQLFEDPTVDKEVEI SNFRVQLFEDPTVDKEVEIRKKVLKIYNKR R V Q D K E 0 0 0 2 0 1 1 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 11 0 1289.6503 A0A024R669;A0A024R688;P51948 A0A024R669 60 70 MNAT1 CDK-activating kinase assembly factor MAT1 yes no 2 0.015028 54.608 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3351900 3351900 0 3351900 3351900 0 0 0 0 14569 199 14967 38697 60761;60762 60761 2 VQLISGPPAK KDLCFTWREFSDFIRVQLISGPPAKLLLID SDFIRVQLISGPPAKLLLIDWPELKESIPV R V Q A K L 1 0 0 0 0 1 0 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 10 0 1008.5968 A6NHR9;J3KTL8 A6NHR9 1247 1256 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 4.4037E-08 117.04 2 1.2099 1.2532 28.052 2 Median 1.2099 1.2532 28.052 2 0 Median NaN NaN NaN 0 0 Median 54939000 22930000 32009000 54939000 22930000 32009000 0 0 0 14570 684 14968 38698;38699 60763;60764;60765 60763 3 VQLPPEIQLAQR ______________________________ VSRVQLPPEIQLAQRLAGNEQVTRDRAVRK R V Q Q R L 1 1 0 0 0 3 1 0 0 1 2 0 0 0 2 0 0 0 0 1 0 0 12 0 1390.7932 Q6PJJ2;P56182;B4DZM3;Q53FR7;D6RE82 Q6PJJ2 10 21 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 6.1539E-05 98.044 2 2 1.08 1.0411 4.7334 4 Median 0.94035 1.0591 5.8402 2 0 Median 1.2135 1.0295 5.0048 2 0 Median 224830000 108980000 115840000 179490000 88087000 91404000 45335000 20895000 24441000 14571 1618 14969 38700;38701;38702;38703 60766;60767;60768;60769;60770;60771;60772 60767 6 VQNDAETLQK KETEQLEIKEVHIEKVQNDAETLQKCLILC VHIEKVQNDAETLQKCLILCYELLKQMSIS K V Q Q K C 1 0 1 1 0 2 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1144.5724 H0Y9Z8 H0Y9Z8 115 124 NCAPG yes yes 2 0.0008968 79.469 2 0.86296 0.96617 1.9423 2 Median 0.86296 0.96617 1.9423 2 0 Median NaN NaN NaN 0 0 Median 139150000 76999000 62155000 139150000 76999000 62155000 0 0 0 14572 1289 14970 38704;38705 60773;60774;60775;60776 60775 4 VQQIYSDSDLK EWAEAMLPTLGKVGRVQQIYSDSDLKVEVC KVGRVQQIYSDSDLKVEVCGTSWTYNPAAV R V Q L K V 0 0 0 2 0 2 0 0 0 1 1 1 0 0 0 2 0 0 1 1 0 0 11 0 1294.6405 B3KRA8;Q86YT6 B3KRA8 161 171 MIB1 E3 ubiquitin-protein ligase MIB1 yes no 2 0.00070241 72.325 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14573 933 14971 38706 60777 60777 1 VQQSSESSTSSPSQHEATPGAR HIKTLEEIKLEKALRVQQSSESSTSSPSQH STSSPSQHEATPGARRLLRITKRTGMKEEK R V Q A R R 2 1 0 0 0 3 2 1 1 0 0 0 0 0 2 7 2 0 0 1 0 0 22 0 2257.0207 B4DLG2;O75152;E9PQ61;B4DYM8;A0A1B0GTU1;A0A024R8H9;A0A1B0GUI2;E9PBY7 B4DLG2 431 452 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 3 1.0429E-05 44.089 2 2 1.9874 1.8612 14.434 4 Median 2.1264 2.1379 9.0002 2 0 Median 1.9496 1.6956 2.5905 2 0 Median 19855000 7091800 12763000 15917000 5711600 10205000 3938100 1380100 2558000 14574 996 14972 38707;38708;38709;38710 60778;60779;60780;60781;60782;60783;60784 60780 6 VQQTVQDLFGR IGEVILVGGMTRMPKVQQTVQDLFGRAPSK RMPKVQQTVQDLFGRAPSKAVNPDEAVAIG K V Q G R A 0 1 0 1 0 3 0 1 0 0 1 0 0 1 0 0 1 0 0 2 0 0 11 0 1289.6728 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;A1XP52 B7Z4V2 381 391 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0017445 65.157 1 1.1624 0.95486 NaN 1 Median NaN NaN NaN 0 0 Median 1.1624 0.95486 NaN 1 0 Median 8671300 3920300 4751000 0 0 0 8671300 3920300 4751000 14575 1092 14973 38711 60785;60786 60786 2 VQREPLLTLVK GEVAKEWQELDDAEKVQREPLLTLVKEIVP DAEKVQREPLLTLVKEIVPYNMAHNAEHEA K V Q V K E 0 1 0 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 0 2 0 0 11 1 1294.7973 Q59EG8;Q13200;Q9NSM5 Q59EG8 184 194 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.010163 42.976 1 2.3443 2.6201 NaN 1 Median 2.3443 2.6201 NaN 1 0 Median NaN NaN NaN 0 0 Median 11742000 3056000 8685900 11742000 3056000 8685900 0 0 0 14576 1707 14974 38712 60787 60787 1 VQSDGQIVLVDDWIK TLVTPLQLLLFASKKVQSDGQIVLVDDWIK VQSDGQIVLVDDWIKLQISHEAAACITGLR K V Q I K L 0 0 0 3 0 2 0 1 0 2 1 1 0 0 0 1 0 1 0 3 0 0 15 0 1713.8938 Q08211;B3KU66 Q08211 1075 1089 DHX9 ATP-dependent RNA helicase A yes no 2 3.9399E-22 145.6 2 2 1.2724 1.2199 1.4044 4 Median 1.0879 1.2247 0.23692 2 0 Median 1.4929 1.2031 1.6419 2 0 Median 250270000 109770000 140500000 204940000 92805000 112130000 45336000 16969000 28367000 14577 1691 14975 38713;38714;38715;38716 60788;60789;60790;60791;60792;60793;60794;60795 60790 8 VQSGSESVIQEYVDLR KAQLEPVASPAKKPKVQSGSESVIQEYVDL QSGSESVIQEYVDLRTHYSELTTLTSQYIK K V Q L R T 0 1 0 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 1 3 0 0 16 0 1807.8952 Q15149 Q15149 1442 1457 PLEC Plectin yes yes 2 6.03E-12 113.24 2 1.4802 1.5166 12.225 2 Median 1.4802 1.5166 12.225 2 0 Median NaN NaN NaN 0 0 Median 40641000 13836000 26805000 40641000 13836000 26805000 0 0 0 14578 1754 14976 38717;38718 60796;60797;60798;60799 60796 4 VQSVETVEGCTHEVALPAEEDYLPLKPR ITEDLSLADLMPRVKVQSVETVEGCTHEVA VALPAEEDYLPLKPRVGKAAKEYPFILDAF K V Q P R V 2 1 0 1 1 1 5 1 1 0 3 1 0 0 3 1 2 0 1 4 0 0 28 1 3165.5652 P42285;A8K6I4 P42285 101 128 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 4 0.054918 7.6654 1 1.0071 0.85291 NaN 1 Median NaN NaN NaN 0 0 Median 1.0071 0.85291 NaN 1 0 Median 13797000 5936400 7860800 0 0 0 13797000 5936400 7860800 14579 1563 14977 38719 60800 60800 1 VQTEVLQK EKAKQLRALRKYGKKVQTEVLQKRQQEKAH LRKYGKKVQTEVLQKRQQEKAHMMNAIKKY K V Q Q K R 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 943.53385 Q6IB29;H7C2Q8;Q99848 Q6IB29 180 187 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 1;2 1.1645E-20 161.12 3 2 0.9663 0.91216 19.729 4 Median 0.9663 1.0599 8.8716 2 0 Median 0.96731 0.77545 10.606 2 0 Median 418870000 170470000 248400000 395210000 158810000 236400000 23659000 11659000 12000000 14580 1316 14978 38720;38721;38722;38723;38724 60801;60802;60803;60804;60805;60806 60801 5 VQTFPFLGR NFDLPYLISRAQTLKVQTFPFLGRVAGLCS RAQTLKVQTFPFLGRVAGLCSNIRDSSFQS K V Q G R V 0 1 0 0 0 1 0 1 0 0 1 0 0 2 1 0 1 0 0 1 0 0 9 0 1063.5815 M0QZR8;Q59FA0;A0A024R4F4;M0R2B7;P28340;Q308M6 M0QZR8 415 423 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.014028 63.565 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4962100 4962100 0 4962100 4962100 0 0 0 0 14581 155 14979 38725 60807 60807 1 VQTHLENPTK ______________________________ ______________________________ - V Q T K Y 0 0 1 0 0 1 1 0 1 0 1 1 0 0 1 0 2 0 0 1 0 0 10 0 1165.6091 A0A0H3W5T2;B4DNC7;A8K5K3;O75030;C9JBI8;C9J845 A0A0H3W5T2 1 10 MITF Microphthalmia-associated transcription factor yes no 2;3 0.0041226 73.885 3 1.1027 1.136 27.838 2 Median 1.1027 1.136 27.838 2 0 Median NaN NaN NaN 0 0 Median 49149000 27676000 21474000 49149000 27676000 21474000 0 0 0 14582 536 14980 38726;38727;38728 60808;60809;60810;60811 60811 4 VQTHLENPTR LSRPPPAQVPREVLKVQTHLENPTRYHLQQ REVLKVQTHLENPTRYHLQQARRQQVKQYL K V Q T R Y 0 1 1 0 0 1 1 0 1 0 1 0 0 0 1 0 2 0 0 1 0 0 10 0 1193.6153 B4DIA5;A0A024QZ23;P19532 B4DIA5 74 83 TFE3 Transcription factor E3 yes no 3 0.025259 23.804 1 1.5767 1.578 NaN 1 Median 1.5767 1.578 NaN 1 0 Median NaN NaN NaN 0 0 Median 8963700 2568500 6395200 8963700 2568500 6395200 0 0 0 14583 9 14981 38729 60812 60812 1 VQTLEELEELGK APEEEEPLLLQRPERVQTLEELEELGKEEC PERVQTLEELEELGKEECFQNKELPRPVLE R V Q G K E 0 0 0 0 0 1 4 1 0 0 3 1 0 0 0 0 1 0 0 1 0 0 12 0 1386.7242 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 508 519 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C no no 2 4.2647E-08 115.78 2 2 1.3379 1.2474 5.2809 4 Median 1.1007 1.2346 8.7409 2 0 Median 1.5385 1.2474 2.489 2 0 Median 195410000 87999000 107410000 163000000 74764000 88237000 32406000 13235000 19170000 14584 2008;393 14982 38730;38731;38732;38733 60813;60814;60815;60816;60817;60818;60819 60814 7 VQTLQFHPFEAQTLISGSYDK SLGKPAASLAVHTDKVQTLQFHPFEAQTLI HPFEAQTLISGSYDKSVALYDCRSPDESHR K V Q D K S 1 0 0 1 0 3 1 1 1 1 2 1 0 2 1 2 2 0 1 1 0 0 21 0 2408.2012 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 302 322 PWP1 Periodic tryptophan protein 1 homolog yes no 3 6.3368E-12 96.903 2 2 1.1498 1.1475 3.2294 4 Median 1.0201 1.1475 1.8301 2 0 Median 1.341 1.1443 5.2786 2 0 Median 359940000 177910000 182040000 207410000 111740000 95666000 152540000 66164000 86372000 14585 339 14983 38734;38735;38736;38737 60820;60821;60822;60823;60824;60825 60824 6 VQTSIAVCK ARIILDEAHNVKNPRVQTSIAVCKLQACAR NVKNPRVQTSIAVCKLQACARWAVTGTPIQ R V Q C K L 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 1 1 0 0 2 0 0 9 0 1004.5325 A0A024R0F1;Q9UNY4;Q59EG6 A0A024R0F1 747 755 TTF2 Transcription termination factor 2 yes no 2 0.041513 41.429 1 2.0808 1.7462 NaN 1 Median NaN NaN NaN 0 0 Median 2.0808 1.7462 NaN 1 0 Median 1232600 476380 756200 0 0 0 1232600 476380 756200 14586 44 14984 38738 60826 60826 1 VQVALEELQDLK LELTDTGLLSGSEERVQVALEELQDLKGVW EERVQVALEELQDLKGVWSELSKVWEQIDQ R V Q L K G 1 0 0 1 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 12 0 1383.7609 Q14204 Q14204 1319 1330 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00021299 89.171 2 2.4124 2.4257 5.4226 2 Median 2.4124 2.4257 5.4226 2 0 Median NaN NaN NaN 0 0 Median 32098000 10196000 21902000 32098000 10196000 21902000 0 0 0 14587 1729 14985 38739;38740 60827;60828 60827 2 VQVEYKGETK KHWPFMVVNDAGRPKVQVEYKGETKSFYPE AGRPKVQVEYKGETKSFYPEEVSSMVLTKM K V Q T K S 0 0 0 0 0 1 2 1 0 0 0 2 0 0 0 0 1 0 1 2 0 0 10 1 1179.6136 E9PN89;V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;Q96IS6;B3KTV0;E9PLF4;B4DTX2;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;A0A024R6B5;P54652 V9HW22 103 112 HSPA8;HEL-S-72p;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2 0.053453 54.066 1 1.1981 1.0484 NaN 1 Median NaN NaN NaN 0 0 Median 1.1981 1.0484 NaN 1 0 Median 1547300 684130 863140 0 0 0 1547300 684130 863140 14588 1467;1248 14986 38741 60829 60829 1 VQVPNCDEIFYAGTGNLLLR HSLLIKNLKNEITKKVQVPNCDEIFYAGTG CDEIFYAGTGNLLLRDADSITLFDVQQKRT K V Q L R D 1 1 2 1 1 1 1 2 0 1 3 0 0 1 1 0 1 0 1 2 0 0 20 0 2278.1416 P53621 P53621 448 467 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 3.153E-06 62.042 1 1.4424 1.4568 NaN 1 Median 1.4424 1.4568 NaN 1 0 Median NaN NaN NaN 0 0 Median 10057000 4270400 5786800 10057000 4270400 5786800 0 0 0 14589 1607 14987 38742 60830;60831 60831 2 VQVQDNEGCPVEALVK EFTVDAKHGGKAPLRVQVQDNEGCPVEALV QVQDNEGCPVEALVKDNGNGTYSCSYVPRK R V Q V K D 1 0 1 1 1 2 2 1 0 0 1 1 0 0 1 0 0 0 0 4 0 0 16 0 1783.8774 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 709 724 FLNA Filamin-A yes no 2 0.00012597 101.89 2 2 2.0088 1.8509 27.334 4 Median 1.4072 1.4675 1.3016 2 0 Median 2.9284 2.3541 2.4782 2 0 Median 49928000 17585000 32344000 37583000 14391000 23191000 12346000 3193300 9152200 14590 1504 14988 38743;38744;38745;38746 60832;60833;60834;60835;60836;60837;60838;60839;60840;60841 60837 10 VQVQDVVLK ______________________________ LPRRAKVQVQDVVLKDEFSSFSELSSASEE K V Q L K D 0 0 0 1 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 4 0 0 9 0 1026.6073 B3KPM8;Q8N5C6 B3KPM8 10 18 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.022748 56.729 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5868900 5868900 0 5868900 5868900 0 0 0 0 14591 921 14989 38747 60842 60842 1 VQVVDEEGDQQHQEGK SGDSTLNTNDLTHLRVQVVDEEGDQQHQEG QVVDEEGDQQHQEGKRLRRVACTCPNCKEG R V Q G K R 0 0 0 2 0 4 3 2 1 0 0 1 0 0 0 0 0 0 0 3 0 0 16 0 1823.8286 Q86TP0;Q8WWU2;Q8WWU3;Q59FX5;H0Y6K5;H0Y7L6;B7ZLN9;Q02447 Q86TP0 156 171 SP3 Transcription factor Sp3 yes no 3 0.0053077 30.072 1 0.69934 0.59117 NaN 1 Median NaN NaN NaN 0 0 Median 0.69934 0.59117 NaN 1 0 Median 2014000 1041100 972890 0 0 0 2014000 1041100 972890 14592 1115 14990 38748 60843 60843 1 VQVVGTYR ILDDDLVDKAKPGDRVQVVGTYRCLPGKKG KAKPGDRVQVVGTYRCLPGKKGGYTSGTFR R V Q Y R C 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 3 0 0 8 0 920.50797 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 235 242 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.0014375 109.01 2 1.1034 1.1747 3.3478 2 Median 1.1034 1.1747 3.3478 2 0 Median NaN NaN NaN 0 0 Median 60700000 31909000 28791000 60700000 31909000 28791000 0 0 0 14593 568 14991 38749;38750 60844;60845;60846;60847 60847 4 VQWFVR LFEDDSDPPPKKRARVQWFVRFCEVPACKR DPPPKKRARVQWFVRFCEVPACKRHLLGRK R V Q V R F 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 0 6 0 833.45481 B7Z8H0;Q96F82;Q13415;A8K794 B7Z8H0 86 91 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.034893 115.01 1 1.4992 1.4904 NaN 1 Median 1.4992 1.4904 NaN 1 0 Median NaN NaN NaN 0 0 Median 8432200 3731100 4701100 8432200 3731100 4701100 0 0 0 14594 1103 14992 38751 60848 60848 1 VQWGVFVPR EPRPLYIQKGISREKVQWGVFVPRDVPESF GISREKVQWGVFVPRDVPESFTSEAYQWLN K V Q P R D 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 3 0 0 9 0 1086.5974 A8K330;Q8IWA0 A8K330 629 637 WDR75 WD repeat-containing protein 75 yes no 2 1.0206E-07 139.31 2 2 0.96 0.92734 9.7674 4 Median 0.75122 0.84035 8.7407 2 0 Median 1.185 0.97077 1.2826 2 0 Median 125030000 68199000 56835000 103640000 58596000 45047000 21391000 9602900 11788000 14595 716 14993 38752;38753;38754;38755 60849;60850;60851;60852;60853;60854 60850 6 VQYEGFRPGMYVR QLNRAEFEDQDDEARVQYEGFRPGMYVRIE ARVQYEGFRPGMYVRIEIENVPCEFVQNFD R V Q V R I 0 2 0 0 0 1 1 2 0 0 0 0 1 1 1 0 0 0 2 2 0 0 13 1 1600.782 Q14692 Q14692 875 887 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.029733 26.13 1 1.4304 1.296 NaN 1 Median NaN NaN NaN 0 0 Median 1.4304 1.296 NaN 1 0 Median 3052000 1385000 1667000 0 0 0 3052000 1385000 1667000 14596 1742 14994 38756 60855 60855 1 VRDDVAEYK ERMAQRFYNLVLLPRVRDDVAEYKRLNFHL LVLLPRVRDDVAEYKRLNFHLYMALKKALF R V R Y K R 1 1 0 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 9 1 1093.5404 Q13895;H7BY94 Q13895 258 266 BYSL Bystin yes no 2 0.00011113 117.7 2 1.0057 1.1818 1.6635 2 Median 1.0057 1.1818 1.6635 2 0 Median NaN NaN NaN 0 0 Median 88580000 43501000 45079000 88580000 43501000 45079000 0 0 0 14597 1724 14995 38757;38758 60856;60857;60858 60857 3 VREEEIEVDSR KRKKGEKRASSPFRRVREEEIEVDSRVADN PFRRVREEEIEVDSRVADNSFDAKRGAAGD R V R S R V 0 2 0 1 0 0 4 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 11 1 1359.663 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 628 638 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.0025453 75.819 1 1.5938 1.7286 NaN 1 Median 1.5938 1.7286 NaN 1 0 Median NaN NaN NaN 0 0 Median 26855000 7886700 18968000 26855000 7886700 18968000 0 0 0 14598 468 14996 38759 60859 60859 1 VREELIDK QDKDTLSIHYLMLPRVREELIDKKTESAVS HYLMLPRVREELIDKKTESAVSQMQSVIEL R V R D K K 0 1 0 1 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 1 1000.5553 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2;Q7L4K8 Q59G75 826 833 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.018743 96.668 1 1.9482 2.3238 NaN 1 Median 1.9482 2.3238 NaN 1 0 Median NaN NaN NaN 0 0 Median 50465000 17419000 33046000 50465000 17419000 33046000 0 0 0 14599 1561 14997 38760 60860 60860 1 VREEVPLELVEAHVK VASAAAKAALEEFSRVREEVPLELVEAHVK VREEVPLELVEAHVKKVQEAARASGKVDPT R V R V K K 1 1 0 0 0 0 4 0 1 0 2 1 0 0 1 0 0 0 0 4 0 0 15 1 1745.9676 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;B4DYF9 Q58EY4 725 739 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 3 0.0010666 38.889 2 1.5312 1.2892 11.792 2 Median NaN NaN NaN 0 0 Median 1.5312 1.2892 11.792 2 0 Median 14562000 5465400 9096600 0 0 0 14562000 5465400 9096600 14600 1798 14998 38761;38762 60861;60862;60863 60862 2 VRELLEQISAFDNVPR QKISELIKRPNVSPKVRELLEQISAFDNVP RELLEQISAFDNVPRKKAKFQNWMKNSLKV K V R P R K 1 2 1 1 0 1 2 0 0 1 2 0 0 1 1 1 0 0 0 2 0 0 16 1 1885.0058 Q9NX58;A8K3Y5 Q9NX58 94 109 LYAR Cell growth-regulating nucleolar protein yes no 3 0.00012966 56.121 1 1.2753 1.1708 NaN 1 Median NaN NaN NaN 0 0 Median 1.2753 1.1708 NaN 1 0 Median 12268000 5363000 6904800 0 0 0 12268000 5363000 6904800 14601 2079 14999 38763 60864 60864 1 VREQSVQEIPVSR ALSFYKVILGAHNEKVREQSVQEIPVSRLF EKVREQSVQEIPVSRLFREPSQADIALLKL K V R S R L 0 2 0 0 0 2 2 0 0 1 0 0 0 0 1 2 0 0 0 3 0 0 13 1 1525.8213 CON__P06868 CON__P06868 646 658 yes yes 3 0.023847 45.825 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7307200 7307200 0 7307200 7307200 0 0 0 0 + 14602 1157 15000 38764 60865 60865 1 VREYELR VRGAKAEEILEKGLKVREYELRKNNFSDTG EILEKGLKVREYELRKNNFSDTGNFGFGIQ K V R L R K 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 1 963.51378 Q08ES8;Q5VVD0;P62913;Q5VVC8;Q5VVC9 Q08ES8 88 94 RPL11 60S ribosomal protein L11 yes no 2;3 6.0562E-06 155 4 2 1.0086 1.09 12.471 6 Median 0.98752 1.1428 4.6854 4 0 Median 1.0463 0.91632 10.852 2 0 Median 1109700000 539570000 570150000 1081500000 526620000 554870000 28243000 12957000 15286000 14603 1652 15001 38765;38766;38767;38768;38769;38770 60866;60867;60868;60869;60870;60871;60872;60873;60874 60866 9 VRIEAENEK GKLIQEIVDKSGVVRVRIEAENEKNVPQEE KSGVVRVRIEAENEKNVPQEEEIMPPNSLP R V R E K N 1 1 1 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 9 1 1086.5669 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;R9WNI0;R9WPL0;A0A087WXI3 X5DQX7 316 324 FMR1 Fragile X mental retardation protein 1 yes no 2 0.0028279 98.044 1 1.3615 1.6127 NaN 1 Median 1.3615 1.6127 NaN 1 0 Median NaN NaN NaN 0 0 Median 40752000 17362000 23390000 40752000 17362000 23390000 0 0 0 14604 1689 15002 38771 60875 60875 1 VRPASSAASVYAGAGGSGSR TNYRSLGSVRTPSQRVRPASSAASVYAGAG SAASVYAGAGGSGSRISVSRSVWGGSVGSA R V R S R I 5 2 0 0 0 0 0 4 0 0 0 0 0 0 1 5 0 0 1 2 0 0 20 1 1806.8973 CON__P05784 CON__P05784 27 46 yes yes 3 4.7976E-10 72.09 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 145900000 145900000 0 145900000 145900000 0 0 0 0 + 14605 1155 15003 38772 60876;60877 60877 2 VRPCVVYGGADIGQQIR VQIYEEARKFSYRSRVRPCVVYGGADIGQQ PCVVYGGADIGQQIRDLERGCHLLVATPGR R V R I R D 1 2 0 1 1 2 0 3 0 2 0 0 0 0 1 0 0 0 1 3 0 0 17 1 1886.9785 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010 A0A0D9SFB3 295 311 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 3 2.0638E-18 131.4 1 2 1.162 1.0563 31.016 3 Median 1.5789 1.7146 NaN 1 0 Median 1.1475 1.0081 6.5987 2 0 Median 46150000 20142000 26008000 31592000 13533000 18059000 14558000 6609300 7948300 14606 522 15004 38773;38774;38775 60878;60879;60880;60881;60882;60883;60884 60878 7 VRPDEIMR PQQLWYTHEKKVYLKVRPDEIMRDYIQKHP EKKVYLKVRPDEIMRDYIQKHPELNISEEG K V R M R D 0 2 0 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 8 1 1014.528 E9PKP7;B4DNQ1;Q05BZ1 E9PKP7 217 224 UBTF yes no 2 0.03791 45.68 1 0.59112 0.65308 NaN 1 Median 0.59112 0.65308 NaN 1 0 Median NaN NaN NaN 0 0 Median 11257000 7837200 3420000 11257000 7837200 3420000 0 0 0 14607 1244 15005 38776 60885 60885 954 1 VRPLLPSELER VPSEDSMEKVKVYLRVRPLLPSELERQEDQ VYLRVRPLLPSELERQEDQGCVRIENVETL R V R E R Q 0 2 0 0 0 0 2 0 0 0 3 0 0 0 2 1 0 0 0 1 0 0 11 1 1307.7561 O95235;D6RBN1;D6R9E4 O95235 71 81 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 3 0.00017992 68.536 1 1 0.89989 0.87896 12.677 2 Median 0.69808 0.8036 NaN 1 0 Median 1.16 0.96139 NaN 1 0 Median 80510000 39144000 41366000 59771000 30425000 29346000 20738000 8718400 12020000 14608 1421 15006 38777;38778 60886;60887;60888 60887 3 VRPVLPGEPTPPPGLLLFPSGPGGPSDPPTR NQLQELKGNIRVFCRVRPVLPGEPTPPPGL LFPSGPGGPSDPPTRLSLSRSDERRGTLSG R V R T R L 0 2 0 1 0 0 1 5 0 0 4 0 0 1 11 2 2 0 0 2 0 0 31 1 3100.671 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 317 347 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 3 0.00010809 34.414 2 2 0.8962 0.89306 21.931 4 Median 0.6874 0.73188 4.4788 2 0 Median 1.2076 1.0669 1.4861 2 0 Median 54577000 26899000 27678000 32267000 17591000 14677000 22309000 9308300 13001000 14609 371 15007 38779;38780;38781;38782 60889;60890;60891;60892;60893;60894;60895 60895 7 VRRPAGVR RHVTYVVAKKGVGRKVRRPAGVRGHFKVVD KKGVGRKVRRPAGVRGHFKVVDSRMKKDQR K V R V R G 1 3 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 2 0 0 8 2 909.56207 Q8IY81;B4DKU3 Q8IY81 811 818 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 3 0.041329 46.426 1 0.93306 1.0193 NaN 1 Median 0.93306 1.0193 NaN 1 0 Median NaN NaN NaN 0 0 Median 6587200 3518700 3068400 6587200 3518700 3068400 0 0 0 14610 1898 15008 38783 60896 60896 1 VRTDITYPAGFMDVISIDK VKKICMQRFIKIDGKVRTDITYPAGFMDVI ITYPAGFMDVISIDKTGENFRLIYDTKGRF K V R D K T 1 1 0 3 0 0 0 1 0 3 0 1 1 1 1 1 2 0 1 2 0 0 19 1 2140.0874 B2R491;P62701;Q96IR1;Q53HV1 B2R491 76 94 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 3 5.8166E-06 60.032 3 1.1442 0.95784 25.837 3 Median NaN NaN NaN 0 0 Median 1.1442 0.95784 25.837 3 0 Median 19538000 9469700 10068000 0 0 0 19538000 9469700 10068000 14611 824 15009;15010 38784;38785;38786 60897;60898;60899;60900;60901;60902 60897 654 6 VRVELSNGEK DAVRELDGRTLCGCRVRVELSNGEKRSRNR LCGCRVRVELSNGEKRSRNRGPPPSWGRRP R V R E K R 0 1 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 1 1129.6091 B2R6F3;P84103 B2R6F3 76 85 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 2;3 1.0273E-39 196.07 4 2 1.0813 1.2458 62.967 6 Median 1.1917 1.3921 30.76 4 0 Median 0.59265 0.49715 0.64864 2 0 Median 284460000 121210000 163260000 271730000 113330000 158390000 12736000 7874400 4861400 14612 841 15011 38787;38788;38789;38790;38791;38792 60903;60904;60905;60906;60907;60908;60909;60910;60911 60907 9 VRVELSTGMPR DAVRGLDGKVICGSRVRVELSTGMPRRSRF CGSRVRVELSTGMPRRSRFDRPPARRPFDP R V R P R R 0 2 0 0 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 2 0 0 11 1 1243.6707 Q16629;A0A0B4J1Z1;B4DEK2;C9JAB2;Q8NB80 Q16629 77 87 SRSF7 Serine/arginine-rich splicing factor 7 no no 3 0.0004368 65.179 1 1.8682 2.1529 NaN 1 Median 1.8682 2.1529 NaN 1 0 Median NaN NaN NaN 0 0 Median 62294000 23304000 38990000 62294000 23304000 38990000 0 0 0 14613 1772;1918 15012 38793 60912;60913 60912 1644 2 VSALDLAVLDQVEAR QGACLMETVELLQAKVSALDLAVLDQVEAR VSALDLAVLDQVEARLQSVLGKVNEIAKHK K V S A R L 3 1 0 2 0 1 1 0 0 0 3 0 0 0 0 1 0 0 0 3 0 0 15 0 1597.8675 A8K8J9;F8W1I6;B3KTX4;V9HW58;Q53H88;Q13561;H0YHL1 A8K8J9 181 195 DCTN2;HEL-S-77 Dynactin subunit 2 yes no 2 0.00021588 75.479 2 1 1.2941 1.3378 26.854 3 Plateau 1.2941 1.3228 15.474 2 0 Median 1.0148 0.865 NaN 1 0 Median 14786000 6585200 8200800 11975000 5217400 6757400 2811100 1367800 1443400 14614 777 15013 38794;38795;38796 60914;60915;60916;60917 60914 4 VSANSVYGFTGAQVGK PLRRQVLDGRQLALKVSANSVYGFTGAQVG SANSVYGFTGAQVGKLPCLEISQSVTGFGR K V S G K L 2 0 1 0 0 1 0 3 0 0 0 1 0 1 0 2 1 0 1 3 0 0 16 0 1583.7944 M0QZR8;Q59FA0;A0A024R4F4;M0R2B7;P28340;Q308M6 M0QZR8 695 710 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.032436 38.58 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4834400 4834400 0 4834400 4834400 0 0 0 0 14615 155 15014 38797 60918 60918 1 VSAPEVSVGHK VSTGREGQTPKAGLRVSAPEVSVGHKGGKP AGLRVSAPEVSVGHKGGKPGLTIQAPQLEV R V S H K G 1 0 0 0 0 0 1 1 1 0 0 1 0 0 1 2 0 0 0 3 0 0 11 0 1108.5877 Q09666;B4DTV0 Q09666 331 341 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3 0.028237 28.624 1 2.0429 2.1347 NaN 1 Median 2.0429 2.1347 NaN 1 0 Median NaN NaN NaN 0 0 Median 34321000 12524000 21797000 34321000 12524000 21797000 0 0 0 14616 1696 15015 38798 60919 60919 1 VSASPLLYTLIEK YINLDKAVLGTSNFKVSASPLLYTLIEKTM FKVSASPLLYTLIEKTMQNVKHPVTGQFLY K V S E K T 1 0 0 0 0 0 1 0 0 1 3 1 0 0 1 2 1 0 1 1 0 0 13 0 1432.8177 A8K6Q8;P02786;G3V0E5;B7Z2I6 A8K6Q8 496 508 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.003053 66.056 1 2 0.75365 0.29496 56.389 3 Plateau 0.75365 0.77918 NaN 1 0 Median 0.36191 0.29342 0.74029 2 0 Median 15377000 8641900 6734700 11403000 5934000 5468800 3973800 2707900 1265900 14617 761 15016 38799;38800;38801 60920;60921;60922 60922 2 VSASSPSLAVASQSDSK VMDFYKTLRGGATVKVSASSPSLAVASQSD ASSPSLAVASQSDSKQRRLLVDFPKGSVSN K V S S K Q 3 0 0 1 0 1 0 0 0 0 1 1 0 0 1 7 0 0 0 2 0 0 17 0 1619.8002 D6RDA9;Q3MSN4;Q3MSN1;F5ATB8;E5KQF5;H6V745;F1D8N4;B6ZGU6;E5KQF6;P04150;H6V744 D6RDA9 41 57 NR3C1 Glucocorticoid receptor yes no 2 0.00057527 57.804 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14618 1083 15017 38802;38803 60923;60924 60924 2 VSAWELINSEYFSEGR NLLLSVKYGRFQGQRVSAWELINSEYFSEG SAWELINSEYFSEGRRRQLLRRYRQREVTL R V S G R R 1 1 1 0 0 0 3 1 0 1 1 0 0 1 0 3 0 1 1 1 0 0 16 0 1885.8846 A0A075B730;A0A087X1U6;P58107 A0A075B730 806 821 EPPK1 Epiplakin no no 2 0.00029814 56.295 2 1.7572 1.7627 2.7041 2 Median 1.7572 1.7627 2.7041 2 0 Median NaN NaN NaN 0 0 Median 18198000 6002100 12196000 18198000 6002100 12196000 0 0 0 14619 397;1622 15018 38804;38805 60925;60926 60925 1 VSCAHIYSALDPTAR KHHAEYLTELLTTQRVSCAHIYSALDPTAR VSCAHIYSALDPTARKINLAKFTLGKCSTL R V S A R K 3 1 0 1 1 0 0 0 1 1 1 0 0 0 1 2 1 0 1 1 0 0 15 0 1659.8039 Q8TDD1 Q8TDD1 363 377 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 9.1628E-05 60.489 2 2 1.0519 0.99014 15.037 4 Median 0.85657 0.86337 3.8141 2 0 Median 1.2914 1.1167 1.444 2 0 Median 41228000 19612000 21616000 32325000 15667000 16658000 8903900 3945600 4958300 14620 1933 15019 38806;38807;38808;38809 60927;60928;60929;60930;60931;60932;60933;60934 60929 8 VSDEYEQLSSEALEAAR ______________________________ DEYEQLSSEALEAARICANKYMVKSCGKDG M V S A R I 3 1 0 1 0 1 4 0 0 0 2 0 0 0 0 3 0 0 1 1 0 0 17 0 1895.8749 F8W7C6 F8W7C6 2 18 RPL10 yes yes 2 0.0090566 44.511 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1120500 0 1120500 0 0 0 1120500 0 1120500 14621 1266 15020 38810 60935 60935 1 VSDSISAQYPVVDHEFDAVVVGAGGAGLR GFHFTVDGNKRASAKVSDSISAQYPVVDHE EFDAVVVGAGGAGLRAAFGLSEAGFNTACV K V S L R A 4 1 0 3 0 1 1 4 1 1 1 0 0 1 1 3 0 0 1 6 0 0 29 0 2914.4461 D6RFM5;A0A024QZ30;B4DYN5;P31040;A0A087X1I3 D6RFM5 47 75 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 3 0.032018 13.164 1 0.52966 0.53991 NaN 1 Median 0.52966 0.53991 NaN 1 0 Median NaN NaN NaN 0 0 Median 6876000 4570900 2305100 6876000 4570900 2305100 0 0 0 14622 10 15021 38811 60936 60936 1 VSDVEELTPPEHLSDLPPFSR LIAGPVVEISHQLRKVSDVEELTPPEHLSD LTPPEHLSDLPPFSRCLIGIIIKSSNVVRS K V S S R C 0 1 0 2 0 0 3 0 1 0 3 0 0 1 4 3 1 0 0 2 0 0 21 0 2363.1645 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 1026 1046 NCAPG2 Condensin-2 complex subunit G2 yes no 3 5.0538E-22 116.21 2 2 1.2875 1.2619 19.985 4 Median 0.94511 1.0694 2.504 2 0 Median 1.764 1.5066 4.1647 2 0 Median 214480000 103550000 110920000 161510000 84672000 76834000 52969000 18878000 34091000 14623 1887 15022 38812;38813;38814;38815 60937;60938;60939;60940;60941;60942;60943;60944;60945 60941 9 VSDVIWNSLSR YPREGGVSSRELVKKVSDVIWNSLSRSYFK LVKKVSDVIWNSLSRSYFKDRAHIQSLFSF K V S S R S 0 1 1 1 0 0 0 0 0 1 1 0 0 0 0 3 0 1 0 2 0 0 11 0 1274.6619 A0A024R570;A0A024R5E3;E7EN32;A0A024R5D2;O00255;E7ENS2;E7EPR4;E7ET29;Q7Z5Y5;Q9GZQ5;C9DZM4 A0A024R570 121 131 MEN1 Menin yes no 2 0.012188 56.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6383800 6383800 0 6383800 6383800 0 0 0 0 14624 171 15023 38816 60946 60946 1 VSEFNVSSEGSGEK KNRRKLAERSEASLKVSEFNVSSEGSGEKL KVSEFNVSSEGSGEKLVLADLLEPVKTSSS K V S E K L 0 0 1 0 0 0 3 2 0 0 0 1 0 1 0 4 0 0 0 2 0 0 14 0 1454.6525 Q9BVJ6;O60531 Q9BVJ6 71 84 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 6.0237E-47 185.25 2 2 1.2857 1.2315 1.8679 4 Median 1.0565 1.2103 1.2063 2 0 Median 1.5331 1.2467 0.47691 2 0 Median 426190000 202240000 223950000 372970000 181270000 191710000 53213000 20970000 32243000 14625 2008 15024 38817;38818;38819;38820 60947;60948;60949;60950;60951;60952 60948 6 VSEGGPAEIAGLQIGDK PFSEDKTDKGIYVTRVSEGGPAEIAGLQIG EGGPAEIAGLQIGDKIMQVNGWDMTMVTHD R V S D K I 2 0 0 1 0 1 2 4 0 2 1 1 0 0 1 1 0 0 0 1 0 0 17 0 1639.8417 O14907 O14907 60 76 TAX1BP3 Tax1-binding protein 3 yes yes 2 6.0745E-05 73.466 4 1 1.2808 1.041 NaN 1 Median NaN NaN NaN 0 0 Median 1.2808 1.041 NaN 1 0 Median 16126000 4654500 11472000 13428000 3541800 9886100 2698200 1112800 1585500 14626 1367 15025 38821;38822;38823;38824;38825 60953;60954;60955;60956;60957 60956 5 VSEIPLTR GFPSYCQSLKILGEKVSEIPLTRDNVSEIL LKILGEKVSEIPLTRDNVSEILRCFLMAYG K V S T R D 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 8 0 913.52328 J3QK86;J3KPG5;F8VU39;Q9UIF9 J3QK86 895 902 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.029688 63.054 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14627 1260 15026 38826 60958 60958 1 VSELVQFLLIK APAVGPRSQKQLELKVSELVQFLLIKDQKK LELKVSELVQFLLIKDQKKIPIKRADILKH K V S I K D 0 0 0 0 0 1 1 0 0 1 3 1 0 1 0 1 0 0 0 2 0 0 11 0 1287.7802 Q96MG7 Q96MG7 89 99 NDNL2 Melanoma-associated antigen G1 yes yes 2 2.0567E-05 100.02 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14628 1979 15027 38827;38828;38829 60959;60960;60961 60959 3 VSEVKPTYR FFFDVGSNKYGVFMRVSEVKPTYRNSITVP YGVFMRVSEVKPTYRNSITVPYKVWAKFGH R V S Y R N 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 1 0 1 2 0 0 9 1 1077.5819 Q2NLD4;Q2NLC9;Q5U0P9;Q56A79;Q00577 Q2NLD4 209 217 PURA Transcriptional activator protein Pur-alpha yes no 2 0.010112 79.474 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14629 1673 15028 38830 60962 60962 1 VSFELFADK TVFFDIAVDGEPLGRVSFELFADKVPKTAE GEPLGRVSFELFADKVPKTAENFRALSTGE R V S D K V 1 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 9 0 1054.5335 V9HWF5;A8K486;P62937;B4DM82;B2RE56;F8WE65;C9J5S7;Q71V99 V9HWF5 20 28 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 2 0.0019984 78.113 2 2 2.303 2.204 78.84 4 Median 3.8557 4.3403 0.97415 2 0 Median 1.3717 1.1081 2.3839 2 0 Median 204890000 48478000 156410000 192670000 43176000 149500000 12211000 5302400 6908600 14630 731 15029 38831;38832;38833;38834 60963;60964;60965;60966;60967;60968;60969 60964 7 VSFGGHLRPELFDENLPPNTPLK DSINESEGIPLKRRRVSFGGHLRPELFDEN PELFDENLPPNTPLKRGEAPTKRKSLVMHT R V S L K R 0 1 2 1 0 0 2 2 1 0 4 1 0 2 4 1 1 0 0 1 0 0 23 1 2576.3387 P46013;Q70L73 P46013 506 528 MKI67 Antigen KI-67 no no 4 0.00054896 31.473 2 2 1.6641 1.6661 26.421 4 Median 1.1473 1.31 3.5325 2 0 Median 2.3995 2.0674 0.033328 2 0 Median 99598000 33282000 66316000 48711000 19493000 29217000 50887000 13789000 37099000 14631 1569;1864 15030 38835;38836;38837;38838 60970;60971;60972;60973;60974;60975 60972 6 VSFGVSEQQAVEAWEK KVQENSAYICSRRQRVSFGVSEQQAVEAWE SFGVSEQQAVEAWEKLTREEGTPLTLYYSH R V S E K L 2 0 0 0 0 2 3 1 0 0 0 1 0 1 0 2 0 1 0 3 0 0 16 0 1792.8632 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7 Q9Y3T9 591 606 NOC2L Nucleolar complex protein 2 homolog yes no 2 5.5334E-07 98.368 2 2 0.86879 1.0339 26.586 4 Linear 0.86879 0.90534 12.485 2 0 Median 0.80947 0.64068 27.731 2 0 Median 92760000 44000000 48759000 65216000 29691000 35525000 27543000 14309000 13234000 14632 2139 15031 38839;38840;38841;38842 60976;60977;60978;60979;60980;60981;60982;60983 60978 8 VSFLLPTLR SLEGNPFLTVNDNLKVSFLLPTLRKVNGKD VNDNLKVSFLLPTLRKVNGKDASSTYSQVE K V S L R K 0 1 0 0 0 0 0 0 0 0 3 0 0 1 1 1 1 0 0 1 0 0 9 0 1044.6332 A0A140VJD0;Q9UFC0;H7C5S6;Q59FT0 A0A140VJD0 112 120 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.0011452 89.355 2 2 1.3573 1.2164 11.115 4 Median 1.3476 1.3685 10.772 2 0 Median 1.3573 1.1667 0.00033958 2 0 Median 32715000 13357000 19358000 25391000 10587000 14803000 7323900 2769400 4554500 14633 599 15032 38843;38844;38845;38846 60984;60985;60986;60987;60988;60989;60990 60984 7 VSFSYAGLSGDDPDLGPAHVVTVIAR YHSENPKYPEVGDLRVSFSYAGLSGDDPDL DPDLGPAHVVTVIARQRGDQLVPFSTKSGD R V S A R Q 3 1 0 3 0 0 0 3 1 1 2 0 0 1 2 3 1 0 1 4 0 0 26 0 2642.334 A0A024R2F9;Q9BTV4;Q8TEP9 A0A024R2F9 241 266 TMEM43;FLJ00144 Transmembrane protein 43 yes no 3 1.5481E-17 81.888 2 0.47026 0.48621 NaN 1 Median 0.47026 0.48621 NaN 1 0 Median NaN NaN NaN 0 0 Median 47396000 39160000 8235900 47396000 39160000 8235900 0 0 0 14634 110 15033 38847;38848 60991;60992 60992 2 VSGHVITDIVEGK QGGTSVVIANGTHPKVSGHVITDIVEGKKV PKVSGHVITDIVEGKKVGTFFSEVKPAGPT K V S G K K 0 0 0 1 0 0 1 2 1 2 0 1 0 0 0 1 1 0 0 3 0 0 13 0 1352.73 P54886 P54886 335 347 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 0.00010132 48.823 1 1.849 1.8116 NaN 1 Median 1.849 1.8116 NaN 1 0 Median NaN NaN NaN 0 0 Median 21452000 6849000 14603000 21452000 6849000 14603000 0 0 0 14635 1611 15034 38849 60993;60994 60993 2 VSGISFPTTELLR SSLWRSSGAPETLQRVSGISFPTTELLRVW QRVSGISFPTTELLRVWEAWREEAELRDHR R V S L R V 0 1 0 0 0 0 1 1 0 1 2 0 0 1 1 2 2 0 0 1 0 0 13 0 1418.7769 Q9BW92 Q9BW92 276 288 TARS2 Threonine--tRNA ligase, mitochondrial yes yes 2 0.0094957 42.743 1 1.3881 1.4395 NaN 1 Median 1.3881 1.4395 NaN 1 0 Median NaN NaN NaN 0 0 Median 5744700 1624500 4120200 5744700 1624500 4120200 0 0 0 14636 2011 15035 38850 60995 60995 1 VSGLEPATVDWAFDLTK KYDRNGLNVSIECKRVSGLEPATVDWAFDL GLEPATVDWAFDLTKTNMQTMYEQSEWGWK R V S T K T 2 0 0 2 0 0 1 1 0 0 2 1 0 1 1 1 2 1 0 2 0 0 17 0 1847.9305 F2YHM7;A0A024R5C6;Q86UY6;B4E0W9 F2YHM7 62 78 NAA40;NAT11 N-alpha-acetyltransferase 40 yes no 2 0.031497 36.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3185200 3185200 0 3185200 3185200 0 0 0 0 14637 177 15036 38851 60996 60996 1 VSGNPQVHIK KAQDSKAYSKITEGKVSGNPQVHIKNVKED ITEGKVSGNPQVHIKNVKEDSTADDSKDSV K V S I K N 0 0 1 0 0 1 0 1 1 1 0 1 0 0 1 1 0 0 0 2 0 0 10 0 1077.5931 P46013 P46013 151 160 MKI67 Antigen KI-67 yes yes 2;3 1.195E-08 123.5 3 1 1.8169 2.0645 25.245 4 Median 1.8252 2.0747 4.1276 3 0 Plateau 4.0308 3.3293 NaN 1 0 Median 388160000 144870000 243290000 376640000 142880000 233760000 11524000 1991600 9532700 14638 1569 15037 38852;38853;38854;38855 60997;60998;60999;61000;61001 60997 5 VSGSINMLSLTQGLFR ITICRLIGIKDMYAKVSGSINMLSLTQGLF SGSINMLSLTQGLFRGLSRQETHQQLADKK K V S F R G 0 1 1 0 0 1 0 2 0 1 3 0 1 1 0 3 1 0 0 1 0 0 16 0 1721.9134 P82675 P82675 336 351 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 2 0.0053653 42.031 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3228600 0 3228600 3228600 0 3228600 0 0 0 14639 1668 15038 38856 61002 61002 1471 1 VSGTLDTPEK QTSTKGQVLRKKKKKVSGTLDTPEKTVDSQ KKKKKVSGTLDTPEKTVDSQGPTPVCTPTF K V S E K T 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 1 2 0 0 1 0 0 10 0 1045.5292 Q9BYG3;C9J808;H7BZL0 Q9BYG3 217 226 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 2.3261E-22 168.26 2 2 1.2005 1.1653 10.194 3 Median 1.1015 1.2555 10.551 2 0 Median 1.3951 1.1132 NaN 1 0 Median 331110000 166880000 164240000 311060000 158170000 152890000 20055000 8705400 11350000 14640 2019 15039 38857;38858;38859;38860 61003;61004;61005;61006;61007;61008;61009 61003 7 VSGVDGYETEGIR SKLSTPGARAETNSRVSGVDGYETEGIRGL SRVSGVDGYETEGIRGLRALGVRDLSYRLV R V S I R G 0 1 0 1 0 0 2 3 0 1 0 0 0 0 0 1 1 0 1 2 0 0 13 0 1380.6521 Q14566;Q4ZG57 Q14566 270 282 MCM6 DNA replication licensing factor MCM6 yes no 2 0.00033387 88.155 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14641 1734 15040 38861 61010 61010 1 VSHELGPSLR ITQPRRISAVSVAQRVSHELGPSLRRNVGF SVAQRVSHELGPSLRRNVGFQVRLESKPPS R V S L R R 0 1 0 0 0 0 1 1 1 0 2 0 0 0 1 2 0 0 0 1 0 0 10 0 1093.588 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 475 484 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 0.029928 30.205 1 1.5768 1.5817 NaN 1 Median 1.5768 1.5817 NaN 1 0 Median NaN NaN NaN 0 0 Median 17568000 9346800 8221100 17568000 9346800 8221100 0 0 0 14642 122 15041 38862 61011 61011 1 VSHLLGINVTDFTR NTDQASMPDNTAAQKVSHLLGINVTDFTRG KVSHLLGINVTDFTRGILTPRIKVGRDYVQ K V S T R G 0 1 1 1 0 0 0 1 1 1 2 0 0 1 0 1 2 0 0 2 0 0 14 0 1570.8467 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 374 387 MYH9 Myosin-9 yes no 2;3 5.648E-06 81.311 2 3 2.1996 2.1945 18.66 4 Median 1.6552 1.8901 0.97216 2 0 Median 3.0051 2.6042 4.0601 2 0 Median 407910000 130670000 277250000 266970000 97836000 169130000 140940000 32832000 108110000 14643 81 15042 38863;38864;38865;38866;38867 61012;61013;61014;61015;61016;61017;61018;61019;61020;61021 61020 10 VSHSPALSSDVR IQGHQIIAVPDSGSKVSHSPALSSDVRSTN GSKVSHSPALSSDVRSTNGTAECKTVKRPA K V S V R S 1 1 0 1 0 0 0 0 1 0 1 0 0 0 1 4 0 0 0 2 0 0 12 0 1253.6364 Q68CP9;F8WCU9;F8VWP4;Q8NBP1;F8W108 Q68CP9 1493 1504 ARID2 AT-rich interactive domain-containing protein 2 yes no 2 0.013411 44.318 1 0.90446 0.93843 NaN 1 Median 0.90446 0.93843 NaN 1 0 Median NaN NaN NaN 0 0 Median 5679400 3155100 2524300 5679400 3155100 2524300 0 0 0 14644 1839 15043 38868 61022 61022 1 VSIAVLR VLKEAKRIPEEILGKVSIAVLRGLAYLREK IPEEILGKVSIAVLRGLAYLREKHQIMHRD K V S L R G 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 2 0 0 7 0 756.48577 P36507;Q7Z370;G5E9C7;A0A1B0GUL7 P36507 173 179 MAP2K2;DKFZp686L02273 Dual specificity mitogen-activated protein kinase kinase 2 yes no 2 0.026834 80.294 2 2.3311 2.3143 0.93098 2 Median 2.3311 2.3143 0.93098 2 0 Median NaN NaN NaN 0 0 Median 24259000 7351500 16908000 24259000 7351500 16908000 0 0 0 14645 1547 15044 38869;38870 61023;61024 61023 2 VSIDPESNIISIWNNGK AADNKQRDKNMTCIKVSIDPESNIISIWNN IDPESNIISIWNNGKGIPVVEHKVEKVYVP K V S G K G 0 0 3 1 0 0 1 1 0 4 0 1 0 0 1 3 0 1 0 1 0 0 17 0 1884.9581 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 100 116 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.00048025 73.881 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14646 1679 15045 38871;38872 61025;61026 61026 2 VSILSTFLAPFK KSKRRRRRRSKRKDKVSILSTFLAPFKHLS KDKVSILSTFLAPFKHLSPGITNTEDDDTL K V S F K H 1 0 0 0 0 0 0 0 0 1 2 1 0 2 1 2 1 0 0 1 0 0 12 0 1321.7646 Q9NS39 Q9NS39 36 47 ADARB2 Double-stranded RNA-specific editase B2 yes yes 2 2.6269E-05 100.48 1 2.0545 2.062 NaN 1 Median 2.0545 2.062 NaN 1 0 Median NaN NaN NaN 0 0 Median 7505400 3230600 4274800 7505400 3230600 4274800 0 0 0 14647 2066 15046 38873 61027 61027 1 VSISEGDDKIEYR TKNLVPGESVYGEKRVSISEGDDKIEYRAW KRVSISEGDDKIEYRAWNPFRSKLAAAILG R V S Y R A 0 1 0 2 0 0 2 1 0 2 0 1 0 0 0 2 0 0 1 1 0 0 13 1 1509.7311 Q96BS4;P22087;M0QXL5;M0R299;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 62 74 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 0.00018819 95.094 4 4 0.88794 0.78338 8.4927 6 Median 0.75845 0.89567 1.9232 2 0 Median 0.8946 0.75499 3.6528 4 0 Median 195810000 106670000 89133000 106380000 60349000 46029000 89428000 46325000 43103000 14648 1506 15047 38874;38875;38876;38877;38878;38879;38880;38881 61028;61029;61030;61031;61032;61033;61034;61035;61036;61037;61038 61030 11 VSITEAMHR TGPVAGILDTETLEKVSITEAMHRNLVDNI TETLEKVSITEAMHRNLVDNITGQRLLEAQ K V S H R N 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 1 1 0 0 1 0 0 9 0 1042.523 Q15149;D3DWL0;Q96IE3 Q15149 4429 4437 PLEC;PLEC1 Plectin yes no 2;3 0.0075111 54.712 3 2.2128 2.2383 28.598 2 Median 2.2128 2.2383 28.598 2 0 Median NaN NaN NaN 0 0 Median 34128000 7452300 26676000 34128000 7452300 26676000 0 0 0 14649 1754 15048 38882;38883;38884 61039;61040;61041 61041 1620 3 VSIVNQYGK MVGVGPKGEESMAARVSIVNQYGKCVYDKY ESMAARVSIVNQYGKCVYDKYVKPTEPVTD R V S G K C 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 1 2 0 0 9 0 1006.5447 Q9GZR2;B4E331;B4DJ95;A0A0C4DG22 Q9GZR2 265 273 REXO4 RNA exonuclease 4 yes no 2 0.00066859 90.37 2 2 1.5425 1.2395 10.395 2 Median NaN NaN NaN 0 0 Median 1.5425 1.2395 10.395 2 0 Median 45003000 38521000 6481400 34430000 34430000 0 10573000 4091600 6481400 14650 2021 15049 38885;38886;38887;38888 61042;61043;61044;61045;61046;61047 61043 6 VSIVTPEDILR VKRKQDEWIKFDDDKVSIVTPEDILRLSGG DDDKVSIVTPEDILRLSGGGDWHIAYVLLY K V S L R L 0 1 0 1 0 0 1 0 0 2 1 0 0 0 1 1 1 0 0 2 0 0 11 0 1240.7027 A6NJA2;D3DUG9;B2RD79;P54578 A6NJA2 409 419 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 0.0030649 68.557 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7056400 0 7056400 7056400 0 7056400 0 0 0 14651 686 15050 38889 61048 61048 1 VSLAGACGVGGYGSR SVSRSGGGGGGGFGRVSLAGACGVGGYGSR VSLAGACGVGGYGSRSLYNLGGSKRISIST R V S S R S 2 1 0 0 1 0 0 5 0 0 1 0 0 0 0 2 0 0 1 2 0 0 15 0 1409.6721 CON__P13647;P13647;F8VV57 CON__P13647 49 63 KRT5 Keratin, type II cytoskeletal 5 yes no 2 0.00050083 71.548 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31522000 31522000 0 31522000 31522000 0 0 0 0 + 14652 1162 15051 38890 61049 61049 1 VSLDVNHFAPDELTVK SSGVSEIRHTADRWRVSLDVNHFAPDELTV SLDVNHFAPDELTVKTKDGVVEITGKHEER R V S V K T 1 0 1 2 0 0 1 0 1 0 2 1 0 1 1 1 1 0 0 3 0 0 16 0 1782.9152 V9HW43;P04792;B4DL87;F8WE04 V9HW43 97 112 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 3 1.9237E-12 112.8 2 2 1.2364 1.2411 28.865 4 Median 1.3277 1.5726 1.4001 2 0 Median 1.1139 0.95628 4.7959 2 0 Median 1553400000 682790000 870600000 1345300000 584380000 760950000 208060000 98412000 109650000 14653 1443 15052 38891;38892;38893;38894 61050;61051;61052;61053;61054;61055;61056;61057;61058;61059 61054 10 VSLEDLYNGK RNGRRRGEDMMHPLKVSLEDLYNGKTTKLQ MHPLKVSLEDLYNGKTTKLQLSKNVLCSAC K V S G K T 0 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 10 0 1136.5714 A0A024R6S1;O60884;A0A087WT48 A0A024R6S1 122 131 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 0.00030272 90.709 2 1 1.4918 1.6439 42.703 3 Plateau 1.4739 1.5955 4.227 2 0 Median 0.93345 0.76289 NaN 1 0 Median 77687000 32691000 44997000 75063000 31333000 43729000 2624700 1357600 1267100 14654 208 15053 38895;38896;38897 61060;61061;61062;61063 61060 4 VSLEPHQGPGTPESK IAEGTGITTRQQRKRVSLEPHQGPGTPESK VSLEPHQGPGTPESKKATSCFPRPMTPRDR R V S S K K 0 0 0 0 0 1 2 2 1 0 1 1 0 0 3 2 1 0 0 1 0 0 15 0 1561.7736 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1976 1990 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 2.7466E-47 177.81 3 1 0.70504 0.76261 9.2382 4 Median 0.68847 0.73362 10.048 3 0 Median 1.0073 0.79275 NaN 1 0 Median 88913000 49352000 39561000 84905000 47300000 37605000 4008000 2051900 1956100 14655 186;1747 15054 38898;38899;38900;38901 61064;61065;61066;61067;61068;61069 61068 6 VSLLGPVTTPEHQLLK ENSNAFSTPQTPDIKVSLLGPVTTPEHQLL SLLGPVTTPEHQLLKTPSSSSLSQRVRSTL K V S L K T 0 0 0 0 0 1 1 1 1 0 4 1 0 0 2 1 2 0 0 2 0 0 16 0 1730.9931 B2RE34;A0A024R136;Q9H0H5;Q9H9L9 B2RE34 572 587 RACGAP1 Rac GTPase-activating protein 1 yes no 3 0.0064689 28.212 1 1 1.4403 1.288 39.056 2 Median 0.98007 0.97717 NaN 1 0 Median 2.1167 1.6976 NaN 1 0 Median 17211000 7416800 9793900 9678500 4815400 4863100 7532100 2601300 4930800 14656 68 15055 38902;38903 61070;61071 61070 2 VSLLNEQFLPLIR EYISYSSQEEMDSNKVSLLNEQFLPLIRLL NKVSLLNEQFLPLIRLLESKYPRTLDVVLE K V S I R L 0 1 1 0 0 1 1 0 0 1 4 0 0 1 1 1 0 0 0 1 0 0 13 0 1540.8977 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 418 430 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 8.5149E-39 183.03 1 2 1.0973 1.083 7.2709 3 Plateau 0.92812 1.083 NaN 1 0 Median 1.1115 0.96069 3.162 2 0 Median 298070000 150070000 148000000 195910000 101030000 94873000 102170000 49037000 53131000 14657 897 15056 38904;38905;38906 61072;61073;61074 61074 3 VSLYGYLR TNPEDIRTNIKCDRKVSLYGYLRGAHLKNK NIKCDRKVSLYGYLRGAHLKNKSQIHMPGV K V S L R G 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 2 1 0 0 8 0 969.52837 Q14692 Q14692 280 287 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0010255 114.72 1 2 1.3855 1.1347 2.3616 3 Median 0.98112 1.1347 NaN 1 0 Median 1.4161 1.1569 2.9416 2 0 Median 97309000 43273000 54036000 68567000 30869000 37698000 28743000 12404000 16338000 14658 1742 15057 38907;38908;38909 61075;61076;61077;61078;61079;61080 61076 6 VSNLQYLHSYLTYIK DQKQRDYILEGEPGKVSNLQYLHSYLTYIK VSNLQYLHSYLTYIKLSTAIKRNENMAKGL K V S I K L 0 0 1 0 0 1 0 0 1 1 3 1 0 0 0 2 1 0 3 1 0 0 15 0 1840.9723 Q9UHB9;B4DVI7;Q96K98;Q96K97 Q9UHB9 373 387 SRP68 Signal recognition particle subunit SRP68 yes no 3 0.019377 21.831 2 1 1.1245 1.1436 18.178 3 Median 1.0705 1.0725 9.0827 2 0 Median 1.8272 1.4399 NaN 1 0 Median 27453000 14568000 12885000 21843000 12086000 9756900 5609800 2481500 3128400 14659 2101 15058 38910;38911;38912 61081;61082;61083 61082 3 VSPEEVTIYNHPGIQAELR PLSASIELILVEDVRVSPEEVTIYNHPGIQ EVTIYNHPGIQAELRIREGSGYFFLNTSTA R V S L R I 1 1 1 0 0 1 3 1 1 2 1 0 0 0 2 1 1 0 1 2 0 0 19 0 2151.096 Q8TEM1 Q8TEM1 897 915 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 1.1481E-05 52.19 1 2 0.7413 0.60963 16.838 3 Plateau 0.7413 0.81175 NaN 1 0 Median 0.70418 0.60648 0.73264 2 0 Median 40473000 21112000 19361000 32319000 16914000 15405000 8153500 4197100 3956400 14660 1937 15059 38913;38914;38915 61084;61085;61086 61084 3 VSPESNEDISTTVVYR SLQQELALKETVWKKVSPESNEDISTTVVY SPESNEDISTTVVYRMESLGEKS_______ K V S Y R M 0 1 1 1 0 0 2 0 0 1 0 0 0 0 1 3 2 0 1 3 0 0 16 0 1794.8636 Q68D38;B3KM58;B8ZZC5;B8ZZA8 Q68D38 229 244 DKFZp686O15119;GLS yes no 2 1.0018E-06 89.959 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4709300 0 4709300 4709300 0 4709300 0 0 0 14661 902 15060 38916;38917 61087;61088 61088 2 VSQEHPVVLTK FSEDEMKKFLEEATRVSQEHPVVLTKFVEG EATRVSQEHPVVLTKFVEGAREVEMDAVGK R V S T K F 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 1 1 0 0 3 0 0 11 0 1235.6874 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209 Q5R210 1158 1168 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.00032064 87.184 2 1.5898 1.6528 NaN 1 Median 1.5898 1.6528 NaN 1 0 Median NaN NaN NaN 0 0 Median 9933900 3435600 6498300 9933900 3435600 6498300 0 0 0 14662 148 15061 38918;38919 61089;61090;61091 61089 3 VSQLLAVTGK FEDRDRSHREEMEVRVSQLLAVTGKKTTRP EMEVRVSQLLAVTGKKTTRP__________ R V S G K K 1 0 0 0 0 1 0 1 0 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1014.6073 J3KS23;A0A024R6X2;Q13951 J3KS23 68 77 CBFB Core-binding factor subunit beta yes no 2 0.0050896 70.1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8982000 0 8982000 8982000 0 8982000 0 0 0 14663 210 15062 38920;38921 61092;61093 61093 2 VSQPEVGAAIK SETQPDEEEEEEEEKVSQPEVGAAIKIIRQ EEEKVSQPEVGAAIKIIRQLMEKFNLDLST K V S I K I 2 0 0 0 0 1 1 1 0 1 0 1 0 0 1 1 0 0 0 2 0 0 11 0 1097.6081 Q9NYB0 Q9NYB0 306 316 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 2 0.0036568 59.426 1 1.6018 1.6064 NaN 1 Median 1.6018 1.6064 NaN 1 0 Median NaN NaN NaN 0 0 Median 13806000 5595000 8211400 13806000 5595000 8211400 0 0 0 14664 2082 15063 38922 61094 61094 1 VSQTPESLDFLK ARPPLPRQQSTSSDRVSQTPESLDFLKVPD SDRVSQTPESLDFLKVPDQGAAGVRRQTTS R V S L K V 0 0 0 1 0 1 1 0 0 0 2 1 0 1 1 2 1 0 0 1 0 0 12 0 1362.7031 Q4KMR3;Q12965 Q4KMR3 1008 1019 MYO1E Unconventional myosin-Ie yes no 2 0.0011662 61.833 1 1 1.1388 1.0701 16.589 2 Median 1.1157 1.2033 NaN 1 0 Median 1.1624 0.95167 NaN 1 0 Median 42892000 20056000 22836000 37449000 17563000 19887000 5442400 2493000 2949400 14665 1703 15064 38923;38924 61095;61096 61096 2 VSSLMWEVR LSTIKQRLENRFYRRVSSLMWEVRYIEHNT NRFYRRVSSLMWEVRYIEHNTRTFNEPGSP R V S V R Y 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 1 0 2 0 0 9 0 1105.559 Q8WWQ0;Q9NWP3 Q8WWQ0 1221 1229 PHIP PH-interacting protein yes no 2 0.00016288 101.64 4 0.78796 0.83211 4.4114 4 Median 0.78796 0.83211 4.4114 4 0 Median NaN NaN NaN 0 0 Median 91024000 49471000 41553000 91024000 49471000 41553000 0 0 0 14666 1942 15065 38925;38926;38927;38928 61097;61098;61099;61100 61099 1784 4 VSSQFDPNK SQSDFKAFAGNSKSKVSSQFDPNKQTPSGK GNSKSKVSSQFDPNKQTPSGKKCIAAKKIK K V S N K Q 0 0 1 1 0 1 0 0 0 0 0 1 0 1 1 2 0 0 0 1 0 0 9 0 1020.4876 Q01780 Q01780 836 844 EXOSC10 Exosome component 10 yes yes 2 0.0001488 95.741 2 0.86279 0.84649 NaN 1 Median 0.86279 0.84649 NaN 1 0 Median NaN NaN NaN 0 0 Median 26510000 17233000 9276200 26510000 17233000 9276200 0 0 0 14667 1676 15066 38929;38930 61101;61102;61103 61103 3 VSSQNLVAIPVYVK SFIPPDGNFRLISYRVSSQNLVAIPVYVKH RVSSQNLVAIPVYVKHSISFKENSSCGRFD R V S V K H 1 0 1 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 1 4 0 0 14 0 1515.8661 Q8NDP0;A0A024QZR5;Q9Y2T2;B4DRN6 Q8NDP0 143 156 DKFZp586G1518;AP3M1 AP-3 complex subunit mu-1 yes no 2 0.01397 41.704 2 1.6797 1.7008 5.1793 2 Median 1.6797 1.7008 5.1793 2 0 Median NaN NaN NaN 0 0 Median 15361000 5812700 9548100 15361000 5812700 9548100 0 0 0 14668 27 15067 38931;38932 61104;61105 61105 2 VSSQPVPWDFYINLK FWVAPRNSAELTVIKVSSQPVPWDFYINLK VSSQPVPWDFYINLKLKERLNEDFDHFCSC K V S L K L 0 0 1 1 0 1 0 0 0 1 1 1 0 1 2 2 0 1 1 2 0 0 15 0 1791.9196 O60566 O60566 796 810 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.01556 32.946 1 0.69135 0.70292 NaN 1 Median 0.69135 0.70292 NaN 1 0 Median NaN NaN NaN 0 0 Median 4562500 2909300 1653200 4562500 2909300 1653200 0 0 0 14669 1396 15068 38933 61106 61106 1 VSTALSCLLGLPLR EVDGSIMEGGGQILRVSTALSCLLGLPLRV RVSTALSCLLGLPLRVQKIRAGRSTPGLRP R V S L R V 1 1 0 0 1 0 0 1 0 0 5 0 0 0 1 2 1 0 0 1 0 0 14 0 1498.8541 A8K8K1;O00442;A6NIC1;B4DSL0 A8K8K1 22 35 RTCA RNA 3-terminal phosphate cyclase yes no 2 0.03177 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2372700 0 2372700 2372700 0 2372700 0 0 0 14670 778 15069 38934 61107 61107 1 VSTDLLR ETTDIISRHLPGVCKVSTDLLREGAPIEPD RHLPGVCKVSTDLLREGAPIEPDPPVSHWK K V S L R E 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 7 0 802.45487 Q96HS1;F5GXG4 Q96HS1 170 176 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.026928 82.913 1 1.5565 1.805 NaN 1 Median 1.5565 1.805 NaN 1 0 Median NaN NaN NaN 0 0 Median 65496000 22825000 42672000 65496000 22825000 42672000 0 0 0 14671 1972 15070 38935 61108 61108 1 VSTPIFSTQEK IEEILKQKNVSYVSRVSTPIFSTQEKMKRL YVSRVSTPIFSTQEKMKRLSEFIYSKTSKA R V S E K M 0 0 0 0 0 1 1 0 0 1 0 1 0 1 1 2 2 0 0 1 0 0 11 0 1235.6398 A0A024R363 A0A024R363 610 620 C3orf63 yes yes 2 0.020897 42.743 1 1.6704 1.3199 NaN 1 Median NaN NaN NaN 0 0 Median 1.6704 1.3199 NaN 1 0 Median 3204400 1071500 2132800 0 0 0 3204400 1071500 2132800 14672 129 15071 38936 61109 61109 1 VSTPSDYTLSFLK LQLTAQSQVQMKKQKVSTPSDYTLSFLKRQ QKVSTPSDYTLSFLKRQRKGL_________ K V S L K R 0 0 0 1 0 0 0 0 0 0 2 1 0 1 1 3 2 0 1 1 0 0 13 0 1456.745 A0A024R570;A0A024R5E3;E7EN32;A0A024R5D2;O00255;Q9UE24 A0A024R570 557 569 MEN1 Menin yes no 2 0.00026412 67.385 2 2 1.409 1.1189 22.932 3 Median 0.77296 0.78466 NaN 1 0 Median 1.4425 1.1612 5.2525 2 0 Median 33250000 11342000 21908000 21045000 5952400 15092000 12205000 5389200 6815600 14673 171 15072 38937;38938;38939;38940 61110;61111;61112;61113;61114 61113 5 VSTPWLQHLSGACGVVDEAVLVCPDPSSR VKFNVEDGEIVQQVRVSTPWLQHLSGACGV VVDEAVLVCPDPSSRSLQTLALETEWELRQ R V S S R S 2 1 0 2 2 1 1 2 1 0 3 0 0 0 3 4 1 1 0 5 0 0 29 0 3135.5118 Q8N766 Q8N766 215 243 EMC1 ER membrane protein complex subunit 1 yes yes 3 0.051916 9.1602 1 0.68668 0.57765 NaN 1 Median NaN NaN NaN 0 0 Median 0.68668 0.57765 NaN 1 0 Median 4475700 2749000 1726700 0 0 0 4475700 2749000 1726700 14674 1913 15073 38941 61115 61115 1 VSTTLNVAQAYYAR ERAFSFRTVEAKQEKVSTTLNVAQAYYARD KVSTTLNVAQAYYARDALAKNLYSRLFSWL K V S A R D 3 1 1 0 0 1 0 0 0 0 1 0 0 0 0 1 2 0 2 2 0 0 14 0 1555.7995 E9PDF6;B0I1S9;O43795 E9PDF6 336 349 MYO1B Unconventional myosin-Ib yes no 2 9.8288E-05 85.533 1 1.3603 1.3341 NaN 1 Median 1.3603 1.3341 NaN 1 0 Median NaN NaN NaN 0 0 Median 13914000 6601800 7312600 13914000 6601800 7312600 0 0 0 14675 805 15074 38942 61116 61116 1 VSVEYTEK SDPIVFVVGAFAHGKVSVEYTEKMVSISNY GAFAHGKVSVEYTEKMVSISNYPLSAALTC K V S E K M 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 8 0 953.47058 A8K6D2;Q92979;A0A087WVM7 A8K6D2 208 215 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 0.0009698 122.13 1 2 1.5285 1.1178 25.288 3 Plateau 1.5285 1.7231 NaN 1 0 Median 1.3888 1.1121 0.72907 2 0 Median 136240000 55393000 80850000 113420000 45932000 67488000 22823000 9461100 13362000 14676 759 15075 38943;38944;38945 61117;61118;61119;61120;61121 61117 5 VSVFFGGLSIK SKEYERFSKYMPSVKVSVFFGGLSIKKDEE PSVKVSVFFGGLSIKKDEEVLKKNCPHVVV K V S I K K 0 0 0 0 0 0 0 2 0 1 1 1 0 2 0 2 0 0 0 2 0 0 11 0 1152.6543 O00148;B4DX78;K7EQN7;A0A024R7H0;A0A0D9SEM9 O00148 144 154 DDX39A;DDX39 ATP-dependent RNA helicase DDX39A no no 2 0.00035056 85.355 2 2 0.97758 0.88478 49.645 4 Median 1.2934 1.367 3.6807 2 0 Median 0.71951 0.57915 2.0868 2 0 Median 85915000 39898000 46018000 75499000 33821000 41678000 10417000 6077000 4339900 14677 1359;521 15076 38946;38947;38948;38949 61122;61123;61124;61125;61126;61127;61128;61129 61124 8 VSVGEFSAEGEGNSK IKESGPPHMKSFVTRVSVGEFSAEGEGNSK VSVGEFSAEGEGNSKKLSKKRAATTVLQEL R V S S K K 1 0 1 0 0 0 3 3 0 0 0 1 0 1 0 3 0 0 0 2 0 0 15 0 1495.6791 E5RJN7;E7EVI1;B7Z1P6;A0A0A0MTC4;A0A0A0MTD1;Q2TBD5;F8VPI7;A8K276;Q4LE57;E7EPX0;A0A0A0MTC6;E7EVJ4;E9PH62;A0A0A0MTC5;A0A024R7X7;Q9NUL3;G5EA18 E5RJN7 71 85 STAU2;STAU2 variant protein Double-stranded RNA-binding protein Staufen homolog 2 yes no 2 0.00067645 67.997 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4079800 4079800 0 4079800 4079800 0 0 0 0 14678 237 15077 38950 61130;61131 61130 2 VSVLNVAVLENPSPFHSPFR ______________________________ VAVLENPSPFHSPFRFEISFECSEALADGR K V S F R F 1 1 2 0 0 0 1 0 1 0 2 0 0 2 3 3 0 0 0 4 0 0 20 0 2208.1691 K7EM93;K7EIL9;K7ES22;K7ELW9;B4DXU6;A0A024R7G4;Q9NVP2 K7EM93 4 23 ASF1B Histone chaperone ASF1B yes no 3 0.002073 25.888 2 1 0.95362 0.95727 5.8048 3 Median 0.94787 0.97131 2.0602 2 0 Median 1.0045 0.88124 NaN 1 0 Median 13050000 6011000 7039400 11353000 5244800 6108100 1697500 766180 931340 14679 224 15078 38951;38952;38953 61132;61133;61134;61135 61132 4 VSVSPVVHVR GRSFSQPEAGGSHHKVSVSPVVHVRGLCES GSHHKVSVSPVVHVRGLCESVVEADLVEAL K V S V R G 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 2 0 0 0 5 0 0 10 0 1077.6295 B7WPG3;C9IYN3;A8K894;D6W592;A0A0S2Z6K1;A0A0S2Z5U3;Q8WVV9;A0A0S2Z610;C9JJZ7;H7BXH8 B7WPG3 72 81 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 3 0.038178 26.786 1 1.3241 1.3165 NaN 1 Median 1.3241 1.3165 NaN 1 0 Median NaN NaN NaN 0 0 Median 16263000 7931000 8331500 16263000 7931000 8331500 0 0 0 14680 586 15079 38954 61136 61136 1 VSYDMDGFCER NSWNQGFIIHHYAGKVSYDMDGFCERNRDV YAGKVSYDMDGFCERNRDVLFMDLIELMQS K V S E R N 0 1 0 2 1 0 1 1 0 0 0 0 1 1 0 1 0 0 1 1 0 0 11 0 1377.5329 Q4KMR3;Q12965;H0YNQ8 Q4KMR3 511 521 MYO1E Unconventional myosin-Ie yes no 2 0.006852 55.806 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14681 1703 15080 38955;38956 61137;61138 61137 1536 2 VSYFPTVPGVYIVSTK KVDIQTEDLEDGTCKVSYFPTVPGVYIVST SYFPTVPGVYIVSTKFADEHVPGSPFTVKI K V S T K F 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 2 2 0 2 4 0 0 16 0 1755.9447 O75369;A0A024R321;Q68CT4;E7EN95;H7C5L4 O75369 2059 2074 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.00028041 56.139 1 1.5745 1.5747 NaN 1 Median 1.5745 1.5747 NaN 1 0 Median NaN NaN NaN 0 0 Median 15411000 6166000 9245100 15411000 6166000 9245100 0 0 0 14682 1402 15081 38957 61139 61139 1 VSYYENVIK YLDNMKAPWELLELRVSYYENVIKAMLESI ELLELRVSYYENVIKAMLESIGVPLEKLKF R V S I K A 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 2 2 0 0 9 0 1113.5706 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 94 102 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.0016421 82.75 1 2.2933 2.3398 NaN 1 Median 2.2933 2.3398 NaN 1 0 Median NaN NaN NaN 0 0 Median 31203000 17701000 13502000 31203000 17701000 13502000 0 0 0 14683 567 15082 38958 61140;61141 61140 2 VTADVINAAEK ELQDCEGLIVRSATKVTADVINAAEKLQVV SATKVTADVINAAEKLQVVGRAGTGVDNVD K V T E K L 3 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1129.5979 O43175;V9HW79;Q5SZU1;B3KSC3 O43175 59 69 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 9.2249E-07 112.36 2 2 2.4797 2.3559 45.768 4 Median 3.1004 3.5069 4.7194 2 0 Median 1.9704 1.591 3.9736 2 0 Median 278520000 77958000 200570000 266800000 73574000 193230000 11719000 4384400 7335000 14684 1382 15083 38959;38960;38961;38962 61142;61143;61144;61145;61146;61147;61148;61149 61142 8 VTAEVVLAHLGGGSTSR ______________________________ AEVVLAHLGGGSTSRATSFLLALEPELEAR K V T S R A 2 1 0 0 0 0 1 3 1 0 2 0 0 0 0 2 2 0 0 3 0 0 17 0 1652.8846 Q96HX3;Q6IBR0;Q53EP4;P04843;F8WF32 Q96HX3 10 26 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2;3 0.00018637 46.701 2 1 0.92302 0.84934 45.3 2 Median 1.1546 1.17 NaN 1 0 Median 0.7379 0.61655 NaN 1 0 Median 22043000 11223000 10819000 18671000 9191500 9479700 3371300 2031500 1339800 14685 1444 15084 38963;38964;38965 61150;61151;61152;61153 61150 4 VTAIEPIINHGGASASTQHLHPSLR LGISKVVKAVVLPGRVTAIEPIINHGGASA GGASASTQHLHPSLRWLFGVAAVVTDVGQI R V T L R W 3 1 1 0 0 1 1 2 3 3 2 0 0 0 2 3 2 0 0 1 0 0 25 0 2605.3725 Q8WYP5;Q96M44 Q8WYP5 126 150 AHCTF1 Protein ELYS yes no 4 0.002883 29.959 1 2.0829 1.7773 NaN 1 Median NaN NaN NaN 0 0 Median 2.0829 1.7773 NaN 1 0 Median 4540700 1574400 2966300 0 0 0 4540700 1574400 2966300 14686 1945 15085 38966 61154 61154 1 VTAQGPGLEPSGNIANK PFEVYVDKSQGDASKVTAQGPGLEPSGNIA AQGPGLEPSGNIANKTTYFEIFTAGAGTGE K V T N K T 2 0 2 0 0 1 1 3 0 1 1 1 0 0 2 1 1 0 0 1 0 0 17 0 1651.8529 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 384 400 FLNA Filamin-A yes no 2 2.2172E-81 202.29 2 1 1.685 1.8787 26.835 3 Median 1.6238 1.8212 4.3919 2 0 Median 3.5511 2.8898 NaN 1 0 Median 135010000 51957000 83052000 128030000 50181000 77845000 6983300 1776000 5207300 14687 1504 15086 38967;38968;38969 61155;61156;61157;61158;61159;61160 61158 6 VTAQSIIPGILER LYTLGTVVVDYRGYRVTAQSIIPGILERDQ YRVTAQSIIPGILERDQEQSVIYGSIDFGK R V T E R D 1 1 0 0 0 1 1 1 0 3 1 0 0 0 1 1 1 0 0 1 0 0 13 0 1395.8086 I3L2B0;K7EIG1;O75153 I3L2B0 520 532 CLUH Clustered mitochondria protein homolog yes no 2 6.6973E-07 111.86 2 1 1.4839 1.5183 1.0418 2 Median 1.4839 1.5183 1.0418 2 0 Median NaN NaN NaN 0 0 Median 30050000 13146000 16905000 30050000 13146000 16905000 0 0 0 14688 1321 15087 38970;38971;38972 61161;61162;61163 61162 3 VTATDLDEPDTLHTR FTVPENCRSGTSVGKVTATDLDEPDTLHTR VTATDLDEPDTLHTRLKYKILQQIPDHPKH K V T T R L 1 1 0 3 0 0 1 0 1 0 2 0 0 0 1 0 4 0 0 1 0 0 15 0 1682.8111 Q9HB00;Q08554 Q9HB00 264 278 DSC1 Desmocollin-1 yes no 3 0.039349 21.233 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13353000 13353000 0 13353000 13353000 0 0 0 0 14689 1693 15088 38973 61164 61164 1 VTAVIPCFPYAR LLIMINACKIASASRVTAVIPCFPYARQDK ASRVTAVIPCFPYARQDKKDKSRAPISAKL R V T A R Q 2 1 0 0 1 0 0 0 0 1 0 0 0 1 2 0 1 0 1 2 0 0 12 0 1392.7224 Q53FW2;P60891;B1ALA9;B1ALA7;A0A140VK41;P11908;B2R860;D3YTJ7;A6NMS2 Q53FW2 85 96 PRPS1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2 no no 2 0.00048732 70.256 1 2 1.1802 1.113 56.619 2 Median 1.6023 1.661 NaN 1 0 Median 0.86933 0.74579 NaN 1 0 Median 27141000 11586000 15555000 22838000 8384700 14453000 4303600 3201400 1102200 14690 1626;616 15089 38974;38975;38976 61165;61166;61167 61165 3 VTAYTVDVTGR DLGETQSRTITVTRRVTAYTVDVTGREGAK VTRRVTAYTVDVTGREGAKDIDISSPEFKI R V T G R E 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 3 0 1 3 0 0 11 0 1180.6088 Q09666;B4DTV0 Q09666 157 167 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 5.164E-10 129.85 1 1.3425 1.4077 NaN 1 Median 1.3425 1.4077 NaN 1 0 Median NaN NaN NaN 0 0 Median 22840000 9516500 13324000 22840000 9516500 13324000 0 0 0 14691 1696 15090 38977 61168;61169 61168 2 VTDAIVLLDR SVLETVEVLQKEGLKVTDAIVLLDREQGGK KEGLKVTDAIVLLDREQGGKDKLQAHGIRL K V T D R E 1 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1113.6394 A8K5J1;P11172;B5LY71;B5LY69;E9PFD2;B5LY67 A8K5J1 146 155 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 0.046242 44.863 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14692 749 15091 38978 61170 61170 1 VTDDLVCLVYK VVLKYRHSDGNLCVKVTDDLVCLVYKTDQA LCVKVTDDLVCLVYKTDQAQDVKKIEKFHS K V T Y K T 0 0 0 2 1 0 0 0 0 0 2 1 0 0 0 0 1 0 1 3 0 0 11 0 1323.6744 P49458;Q8WVW9 P49458 42 52 SRP9 Signal recognition particle 9 kDa protein yes no 2 0.00037601 83.358 1 2 1.039 0.84764 40.33 3 Median 1.6712 1.6388 NaN 1 0 Median 1.0111 0.81732 5.151 2 0 Median 33992000 15078000 18914000 20646000 8675800 11971000 13346000 6401800 6943900 14693 1582 15092 38979;38980;38981 61171;61172;61173 61171 2 VTDLLGGLFSK SDNAFIRASRALTDKVTDLLGGLFSKTEMS LTDKVTDLLGGLFSKTEMSEVLTEILR___ K V T S K T 0 0 0 1 0 0 0 2 0 0 3 1 0 1 0 1 1 0 0 1 0 0 11 0 1148.6441 M0QXU7;Q9UPE4;Q53G69;O43615 M0QXU7 251 261 TIMM44;hTIM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 8.4595E-06 109.42 2 2 2.0841 1.9036 31.529 4 Median 2.4104 2.4667 7.8605 2 0 Median 1.7427 1.4497 9.7377 2 0 Median 30959000 8434100 22525000 27638000 7328600 20309000 3321000 1105500 2215500 14694 1351 15093 38982;38983;38984;38985 61174;61175;61176;61177;61178;61179;61180;61181 61175 8 VTDQCLSFFK TRDSLTEINLSDCNKVTDQCLSFFKRCGNI SDCNKVTDQCLSFFKRCGNICHIDLRYCKQ K V T F K R 0 0 0 1 1 1 0 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 10 0 1243.5907 A0A0C4DGG3;B7ZB05;B4DSN4;Q8NHM5 A0A0C4DGG3 649 658 KDM2B Lysine-specific demethylase 2B yes no 2 0.015602 55.461 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14695 513 15094 38986;38987 61182;61183 61183 2 VTEEIVSSEHDEGLSFSGK TDHPGRTGRPTLPGKVTEEIVSSEHDEGLS IVSSEHDEGLSFSGKVQCYGRELNQPASAA K V T G K V 0 0 0 1 0 0 4 2 1 1 1 1 0 1 0 4 1 0 0 2 0 0 19 0 2048.9538 Q5VWN6 Q5VWN6 1499 1517 FAM208B Protein FAM208B yes yes 3 0.045689 13.23 1 2.2257 1.8249 NaN 1 Median NaN NaN NaN 0 0 Median 2.2257 1.8249 NaN 1 0 Median 2431100 777350 1653800 0 0 0 2431100 777350 1653800 14696 1833 15095 38988 61184 61184 1 VTEELLTDNR LNFKMGNRHKFTGKKVTEELLTDNRYLLLV FTGKKVTEELLTDNRYLLLVLMDAERAWSY K V T N R Y 0 1 1 1 0 0 2 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 10 0 1188.5986 Q9UHB9;B4DVI7;B3KMI9 Q9UHB9 113 122 SRP68 Signal recognition particle subunit SRP68 yes no 2 0.0054583 68.657 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6050400 0 6050400 6050400 0 6050400 0 0 0 14697 2101 15096 38989 61185 61185 1 VTEGLTDVILYHQPDDK PKSKTKEQILEEFSKVTEGLTDVILYHQPD EGLTDVILYHQPDDKKKNRGFCFLEYEDHK K V T D K K 0 0 0 3 0 1 1 1 1 1 2 1 0 0 1 0 2 0 1 2 0 0 17 0 1941.9684 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645 Q05CK9 302 318 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 3 0.00051207 39.256 2 1.7827 1.8289 7.1235 2 Median 1.7827 1.8289 7.1235 2 0 Median NaN NaN NaN 0 0 Median 41790000 16464000 25326000 41790000 16464000 25326000 0 0 0 14698 864 15097 38990;38991 61186;61187 61187 2 VTEGLVDVILYHQPDDK PKNKTKENILEEFSKVTEGLVDVILYHQPD EGLVDVILYHQPDDKKKNRGFCFLEYEDHK K V T D K K 0 0 0 3 0 1 1 1 1 1 2 1 0 0 1 0 1 0 1 3 0 0 17 0 1939.9891 B2R7W4;O43390;B4DMB1;Q0VGD6;B4DT28 B2R7W4 269 285 HNRNPR;HNRPR Heterogeneous nuclear ribonucleoprotein R yes no 3 0.00013321 47.916 1 0.97185 1.0718 NaN 1 Median 0.97185 1.0718 NaN 1 0 Median NaN NaN NaN 0 0 Median 43722000 20584000 23137000 43722000 20584000 23137000 0 0 0 14699 855 15098 38992 61188;61189 61188 2 VTELALTASDR REMKPVIFLDVFLPRVTELALTASDRQTKV FLPRVTELALTASDRQTKVAACELLHSMVM R V T D R Q 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 11 0 1174.6194 P78527;B4DL41 P78527 914 924 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 1.3012E-16 151.83 2 0.59426 0.67725 0.25365 2 Median 0.59426 0.67725 0.25365 2 0 Median NaN NaN NaN 0 0 Median 228140000 141820000 86325000 228140000 141820000 86325000 0 0 0 14700 1665 15099 38993;38994 61190;61191;61192;61193 61193 4 VTELFMDNK ELIEKIGAVEEELNRVTELFMDNKNELDQC EEELNRVTELFMDNKNELDQCKSDLQNKTQ R V T N K N 0 0 1 1 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 1 0 0 9 0 1095.527 P52732;B2RAM6 P52732 436 444 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.00024635 89.698 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10519000 0 10519000 10519000 0 10519000 0 0 0 14701 1602 15100 38995 61194;61195 61195 1388 2 VTESIEDIK PVPMLIPSSMDSEDKVTESIEDIKEKLPTH MDSEDKVTESIEDIKEKLPTHPFEADLLEM K V T I K E 0 0 0 1 0 0 2 0 0 2 0 1 0 0 0 1 1 0 0 1 0 0 9 0 1032.5339 Q5VZL5;H7C1I7 Q5VZL5 1027 1035 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.026156 47.574 1 1.7367 1.4559 NaN 1 Median NaN NaN NaN 0 0 Median 1.7367 1.4559 NaN 1 0 Median 1868600 753420 1115200 0 0 0 1868600 753420 1115200 14702 1835 15101 38996 61196 61196 1 VTFALPDDAETEDTGVLNVK QENEDNKQHKESLKRVTFALPDDAETEDTG PDDAETEDTGVLNVKKNSDEVKSSFEKRQE R V T V K K 2 0 1 3 0 0 2 1 0 0 2 1 0 1 1 0 3 0 0 3 0 0 20 0 2133.0477 B3KPV5;O00566;U3KQ48 B3KPV5 331 350 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 3.2792E-07 109.84 2 2 1.0495 0.99762 7.6229 4 Median 0.89822 0.99762 0.75599 2 0 Median 1.2945 1.0322 12.733 2 0 Median 151130000 76619000 74515000 109580000 57355000 52221000 41558000 19264000 22295000 14703 924 15102 38997;38998;38999;39000 61197;61198;61199;61200;61201;61202 61199 5 VTFEADENENITVVK ______________________________ VTFEADENENITVVKGIRLSENVIDRMKES R V T V K G 1 0 2 1 0 0 3 0 0 1 0 1 0 1 0 0 2 0 0 3 0 0 15 0 1706.8363 A4D1N4;C9JRZ6;Q9NX63;B7Z1X9;F8WAR4;F8WD73 A4D1N4 10 24 CHCHD3 MICOS complex subunit MIC19 yes no 2 2.6006E-05 86.911 1 2 2.0799 1.6411 14.333 3 Median 1.1961 1.3191 NaN 1 0 Median 2.129 1.684 3.645 2 0 Median 64193000 28311000 35882000 56116000 25519000 30596000 8077200 2791300 5285900 14704 664 15103 39001;39002;39003 61203;61204;61205;61206 61204 4 VTFQFSYGTK VLGLKLPNLLGRAEKVTFQFSYGTKETSYG GRAEKVTFQFSYGTKETSYGLSFFKPRPGN K V T T K E 0 0 0 0 0 1 0 1 0 0 0 1 0 2 0 1 2 0 1 1 0 0 10 0 1176.5815 Q9Y512 Q9Y512 159 168 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.0030464 78.098 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34032000 0 34032000 34032000 0 34032000 0 0 0 14705 2147 15104 39004 61207 61207 1 VTFSGLR AKLSATLEQAAATARVTFSGLRDTVTPGEL EQAAATARVTFSGLRDTVTPGELLKAEIID R V T L R D 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 1 0 0 7 0 778.43374 A0A075B730;A0A087X1U6;P58107 A0A075B730 533 539 EPPK1 Epiplakin no no 2 0.005335 114.02 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11127000 11127000 0 11127000 11127000 0 0 0 0 14706 397;1622 15105 39005;39006 61208;61209 61209 2 VTFSLLDQSDPGLAK PGAFDNLLEWPFARRVTFSLLDQSDPGLAK VTFSLLDQSDPGLAKPQHVTETFHPDPNWK R V T A K P 1 0 0 2 0 1 0 1 0 0 3 1 0 1 1 2 1 0 0 1 0 0 15 0 1589.8301 A0A024QZ59;Q9BUZ4;A0A024QZ19;Q2KJU6;Q2KJU3 A0A024QZ59 386 400 TRAF4 TNF receptor-associated factor 4 yes no 2 0.00022474 71.085 1 1 1.1603 1.0698 15.3 2 Median 0.92639 0.96006 NaN 1 0 Median 1.4532 1.192 NaN 1 0 Median 12243000 5910900 6332400 9817200 4993300 4823900 2426000 917550 1508500 14707 11 15106 39007;39008 61210;61211 61210 2 VTFVNFTVTR TRDPTVEFPPDLCSRVTFVNFTVTRSSLQS DLCSRVTFVNFTVTRSSLQSQCLNEVLKAE R V T T R S 0 1 1 0 0 0 0 0 0 0 0 0 0 2 0 0 3 0 0 3 0 0 10 0 1182.6397 Q14204;H0YJ21 Q14204 3696 3705 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00032313 76.143 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6735100 0 6735100 6735100 0 6735100 0 0 0 14708 1729 15107 39009;39010 61212;61213;61214 61212 3 VTGCLIVCIER LRVEKTGHSGTLDPKVTGCLIVCIERATRL LDPKVTGCLIVCIERATRLVKSQQSAGKEY K V T E R A 0 1 0 0 2 0 1 1 0 2 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1318.6737 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 128 138 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.019637 53.683 1 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1930800 1930800 0 0 0 0 1930800 1930800 0 14709 1398 15108 39011;39012;39013;39014 61215;61216;61217;61218 61218 4 VTGEADVEFATHEDAVAAMSK LNPVRVHIEIGPDGRVTGEADVEFATHEDA VEFATHEDAVAAMSKDKANMQHRYVELFLN R V T S K D 5 0 0 2 0 0 3 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2176.9947 E9PCY7;G8JLB6;P31943;H0YB39;H0YBG7;Q68DG4;H0YBD7;B4DP51 E9PCY7 327 347 HNRNPH1;DKFZp686A15170 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 3 4.8992E-16 105.06 3 1 3.0741 3.4568 47.919 3 Plateau 3.0741 3.4568 47.919 3 0 Plateau NaN NaN NaN 0 0 Median 231350000 60484000 170870000 230380000 59514000 170870000 970760 970760 0 14710 1231 15109;15110 39015;39016;39017;39018 61219;61220;61221;61222;61223;61224;61225 61221 947 7 VTGEADVEFATHEEAVAAMSK LNPVRVHIEIGPDGRVTGEADVEFATHEEA VEFATHEEAVAAMSKDRANMQHRYIELFLN R V T S K D 5 0 0 1 0 0 4 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2191.0103 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 327 347 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 3 8.2225E-20 111.66 3 2.5461 2.7995 7.0028 2 Median 2.5461 2.7995 7.0028 2 0 Median NaN NaN NaN 0 0 Median 92070000 26006000 66064000 92070000 26006000 66064000 0 0 0 14711 234 15111 39019;39020;39021 61226;61227;61228;61229;61230 61230 174 5 VTGELAFDTSSADVR WEMMPPTILIDLLKKVTGELAFDTSSADVR VTGELAFDTSSADVRCSVFKCLPMILDNKL K V T V R C 2 1 0 2 0 0 1 1 0 0 1 0 0 1 0 2 2 0 0 2 0 0 15 0 1566.7526 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 423 437 NCAPG2 Condensin-2 complex subunit G2 yes no 2 4.8342E-48 186.58 2 2 1.018 1.1824 22.595 3 Median 0.99053 1.1244 7.1104 2 0 Median 2.0101 1.6468 NaN 1 0 Median 154460000 70559000 83901000 131900000 66462000 65435000 22563000 4096200 18466000 14712 1887 15112 39022;39023;39024;39025 61231;61232;61233;61234;61235;61236;61237;61238;61239 61236 9 VTGQCCEEWVCDEDSIKDPMEDQDGLLGK LSLPNLGCPNPRLVKVTGQCCEEWVCDEDS SIKDPMEDQDGLLGKELGFDASEVELTRNN K V T G K E 0 0 0 5 3 2 4 3 0 1 2 2 1 0 1 1 1 1 0 2 0 0 29 1 3412.4204 B4DI61;Q6FI18;O00622;Q53FA4;Q9UID7 B4DI61 129 157 CYR61 Protein CYR61 yes no 3 7.608E-07 51.22 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18631000 0 18631000 18631000 0 18631000 0 0 0 14713 979 15113 39026 61240 61240 782 1 VTGQFPWSSLR RPGNFERNFSVNLYKVTGQFPWSSLRETDR NLYKVTGQFPWSSLRETDRGMSAEYSFPIW K V T L R E 0 1 0 0 0 1 0 1 0 0 1 0 0 1 1 2 1 1 0 1 0 0 11 0 1276.6564 Q9Y512 Q9Y512 195 205 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 1.3784E-05 92.538 2 1 0.77298 0.7965 NaN 1 Median 0.77298 0.7965 NaN 1 0 Median NaN NaN NaN 0 0 Median 24539000 13957000 10582000 24539000 13957000 10582000 0 0 0 14714 2147 15114 39027;39028;39029 61241;61242;61243 61242 3 VTGVPLSYLLSR LERLMVLVNAVEMARVTGVPLSYLLSRGQQ MARVTGVPLSYLLSRGQQVKVVSQLLRQAM R V T S R G 0 1 0 0 0 0 0 1 0 0 3 0 0 0 1 2 1 0 1 2 0 0 12 0 1303.75 M0QZR8;Q59FA0;A0A024R4F4;M0R2B7;P28340;Q308M6;M0QZB4 M0QZR8 538 549 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.0056947 52.725 2 0.73506 0.73184 11.619 2 Median 0.73506 0.73184 11.619 2 0 Median NaN NaN NaN 0 0 Median 15432000 8783300 6648500 15432000 8783300 6648500 0 0 0 14715 155 15115 39030;39031 61244;61245 61244 1 VTIAQGGVLPNIQAVLLPK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV QGGVLPNIQAVLLPKKTESHHKAK______ K V T P K K 2 0 1 0 0 2 0 2 0 2 3 1 0 0 2 0 1 0 0 3 0 0 19 0 1930.1615 A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3;Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908 A3KPC7 101 119 HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;HIST1H2AC;HIST3H2A Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E yes no 2;3 6.1702E-93 207.8 32 37 0.81917 0.69834 12.478 55 Median 0.72879 0.77817 17.011 23 0 Median 0.84819 0.68809 4.8386 32 0 Median 13557000000 825800000 12731000000 1099800000 604580000 495250000 12457000000 221220000 12235000000 14716 312 15116 39032;39033;39034;39035;39036;39037;39038;39039;39040;39041;39042;39043;39044;39045;39046;39047;39048;39049;39050;39051;39052;39053;39054;39055;39056;39057;39058;39059;39060;39061;39062;39063;39064;39065;39066;39067;39068;39069;39070;39071;39072;39073;39074;39075;39076;39077;39078;39079;39080;39081;39082;39083;39084;39085;39086;39087;39088;39089;39090;39091;39092;39093;39094;39095;39096;39097;39098;39099;39100 61246;61247;61248;61249;61250;61251;61252;61253;61254;61255;61256;61257;61258;61259;61260;61261;61262;61263;61264;61265;61266;61267;61268;61269;61270;61271;61272;61273;61274;61275;61276;61277;61278;61279;61280;61281;61282;61283;61284;61285;61286;61287;61288;61289;61290;61291;61292;61293;61294;61295;61296;61297;61298;61299;61300;61301;61302;61303;61304;61305;61306;61307;61308;61309;61310;61311;61312;61313;61314;61315;61316;61317;61318;61319;61320;61321;61322;61323;61324;61325;61326;61327;61328;61329;61330;61331;61332;61333;61334;61335;61336;61337;61338;61339;61340;61341;61342;61343;61344;61345;61346;61347;61348;61349;61350;61351;61352;61353;61354;61355;61356;61357;61358;61359;61360;61361;61362;61363;61364;61365 61275 120 VTIDPENNLISIWNNGK AADNKQRDPKMSCIRVTIDPENNLISIWNN IDPENNLISIWNNGKGIPVVEHKVEKMYVP R V T G K G 0 0 4 1 0 0 1 1 0 3 1 1 0 0 1 1 1 1 0 1 0 0 17 0 1925.9847 P11388;J3KTB7 P11388 107 123 TOP2A DNA topoisomerase 2-alpha yes no 2 1.3122E-68 193.81 1 0.67471 0.79331 NaN 1 Median 0.67471 0.79331 NaN 1 0 Median NaN NaN NaN 0 0 Median 366380000 211720000 154670000 366380000 211720000 154670000 0 0 0 14717 1471 15117 39101 61366;61367;61368;61369;61370;61371;61372 61367 7 VTILGHVQR KIKELVVTQLGYDTRVTILGHVQRGGTPSA LGYDTRVTILGHVQRGGTPSAFDRILASRM R V T Q R G 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1021.6033 Q01813;B1APP6;V9GY25 Q01813 302 310 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 3 0.016037 37.191 2 2.0251 2.2617 12.267 2 Median 2.0251 2.2617 12.267 2 0 Median NaN NaN NaN 0 0 Median 106390000 28513000 77875000 106390000 28513000 77875000 0 0 0 14718 1677 15118 39102;39103 61373;61374;61375 61373 3 VTIMPKDIQLAR GLFEDTNLCAIHAKRVTIMPKDIQLARRIR AKRVTIMPKDIQLARRIR____________ R V T A R R 1 1 0 1 0 1 0 0 0 2 1 1 1 0 1 0 1 0 0 1 0 0 12 1 1383.7908 K7EK07;B2R4P9;P84243;B4E380;Q16695;A8K4Y7;Q6NXT2;P68431;Q71DI3 K7EK07 118 129 H3F3B;H3F3A;HIST3H3;H3F3C;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 3 0.0012531 52.071 2 0.84286 0.96433 21.645 2 Median 0.84286 0.96433 21.645 2 0 Median NaN NaN NaN 0 0 Median 48492000 24546000 23946000 48492000 24546000 23946000 0 0 0 14719 827;1661;1865 15119;15120 39104;39105 61376;61377;61378 61376 655 3 VTITQGGVLPNIQAVLLPK LAIRNDEELNKLLGKVTITQGGVLPNIQAV QGGVLPNIQAVLLPKKTESHHKAKGK____ K V T P K K 1 0 1 0 0 2 0 2 0 2 3 1 0 0 2 0 2 0 0 3 0 0 19 0 1960.1721 B2R5B6 B2R5B6 101 119 Histone H2A yes yes 2 4.8869E-06 80.555 3 0.84182 0.94753 1.6211 2 Median 0.84182 0.94753 1.6211 2 0 Median NaN NaN NaN 0 0 Median 195850000 101320000 94534000 195850000 101320000 94534000 0 0 0 14720 832 15121 39106;39107;39108 61379;61380;61381;61382 61381 4 VTIYENLDVTNEFHTANLSTK HKLEKDNLLPNQKDKVTIYENLDVTNEFHT LDVTNEFHTANLSTKDNGNLCDYGTHNILD K V T T K D 1 0 3 1 0 0 2 0 1 1 2 1 0 1 0 1 4 0 1 2 0 0 21 0 2408.186 Q562F6;B7Z7S9 Q562F6 556 576 SGOL2 Shugoshin-like 2 yes no 3 0.0011541 29.476 1 1.5099 1.2313 NaN 1 Median NaN NaN NaN 0 0 Median 1.5099 1.2313 NaN 1 0 Median 6492700 2450400 4042400 0 0 0 6492700 2450400 4042400 14721 1795 15122 39109 61383 61383 1 VTLATLK IVEAEAMNYEGSPIKVTLATLKMSVQPTVS NYEGSPIKVTLATLKMSVQPTVSLGGFEIT K V T L K M 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 7 0 744.47454 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;V9HVU7;A0A024RAP1;E5RI98 A0A0S2Z4G7 74 80 NPM1;CLEC2D Nucleophosmin no no 2 0.026881 81.784 3 2 0.85538 0.86302 63.108 4 Median 1.251 1.4904 3.5642 2 0 Median 0.58465 0.50012 3.4566 2 0 Median 3457200000 1463100000 1994100000 3286600000 1354800000 1931900000 170600000 108340000 62258000 14722 559;1213 15123 39110;39111;39112;39113;39114 61384;61385;61386;61387;61388;61389;61390;61391;61392 61385 9 VTLDWAK AAKEAMEDGEIDGNKVTLDWAKPKGEGGFG DGEIDGNKVTLDWAKPKGEGGFGGRGGGRG K V T A K P 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 0 831.44905 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 563 569 NCL Nucleolin yes no 2 0.026774 78.616 1 0.87233 0.98569 NaN 1 Median 0.87233 0.98569 NaN 1 0 Median NaN NaN NaN 0 0 Median 106170000 57188000 48985000 106170000 57188000 48985000 0 0 0 14723 151 15124 39115 61393 61393 1 VTLFSDSK ISTHSTIDAKMASSRVTLFSDSKPLGSEDI AKMASSRVTLFSDSKPLGSEDIDNQGLMMP R V T S K P 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 8 0 895.4651 Q14692 Q14692 392 399 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0109 75.738 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30157000 30157000 0 30157000 30157000 0 0 0 0 14724 1742 15125 39116;39117 61394;61395 61395 2 VTLGTQPTVLR FGLNIETGLLSDRKKVTLGTQPTVLRTFRS DRKKVTLGTQPTVLRTFRSLSTTNVFACSD K V T L R T 0 1 0 0 0 1 0 1 0 0 2 0 0 0 1 0 3 0 0 2 0 0 11 0 1183.6925 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 629 639 DDB1 DNA damage-binding protein 1 yes no 2 9.8763E-31 188.87 2 2 0.9408 0.93973 11.787 4 Median 0.72753 0.85466 0.41095 2 0 Median 1.2112 1.0469 2.2618 2 0 Median 971180000 546760000 424420000 895250000 512780000 382470000 75936000 33981000 41955000 14725 1770 15126 39118;39119;39120;39121 61396;61397;61398;61399;61400;61401;61402;61403 61399 8 VTLHMITERISK LDYEDGRGSRHAYHKVTLHMITERISKRDY YHKVTLHMITERISKRDYTPSTNSLALSRS K V T S K R 0 1 0 0 0 0 1 0 1 2 1 1 1 0 0 1 2 0 0 1 0 0 12 1 1426.7966 A0A087WYQ2;A0A0G2JQ19;A0A0G2JNW1 A0A087WYQ2 64 75 C6orf10 yes no 2 0.01085 44.753 1 0.80198 0.94552 NaN 1 Median 0.80198 0.94552 NaN 1 0 Median NaN NaN NaN 0 0 Median 106960000 61635000 45324000 106960000 61635000 45324000 0 0 0 14726 437 15127 39122 61404 61404 312 1 VTLILELLQHK DLESVQEVGGSYWQRVTLILELLQHKKKLR YWQRVTLILELLQHKKKLRSPQILVPTLFN R V T H K K 0 0 0 0 0 1 1 0 1 1 4 1 0 0 0 0 1 0 0 1 0 0 11 0 1305.802 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8 B2RWN5 1207 1217 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.0072479 32.159 1 0.88468 0.90147 NaN 1 Median 0.88468 0.90147 NaN 1 0 Median NaN NaN NaN 0 0 Median 12249000 7060300 5188900 12249000 7060300 5188900 0 0 0 14727 897 15128 39123 61405 61405 1 VTLLEGDHVR IPKELPFGDKDTKSKVTLLEGDHVRFNIST DTKSKVTLLEGDHVRFNISTDRRDKLERAT K V T V R F 0 1 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1137.6142 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0 Q9GZV0 277 286 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2;3 4.1794E-05 88.948 4 2.0419 2.266 NaN 1 Median 2.0419 2.266 NaN 1 0 Median NaN NaN NaN 0 0 Median 64502000 13909000 50594000 64502000 13909000 50594000 0 0 0 14728 42 15129 39124;39125;39126;39127 61406;61407;61408;61409 61409 4 VTLTPLK GSAKELQAPRKRTVKVTLTPLKMENESQSK APRKRTVKVTLTPLKMENESQSKNALKESS K V T L K M 0 0 0 0 0 0 0 0 0 0 2 1 0 0 1 0 2 0 0 1 0 0 7 0 770.49019 Q03164 Q03164 2522 2528 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.027069 86.866 2 1 1.0173 1.0335 37.767 3 Median 0.94946 0.94723 12.325 2 0 Median 2.2608 1.7901 NaN 1 0 Median 54662000 26585000 28077000 51635000 25706000 25929000 3026700 879250 2147500 14729 1680 15130 39128;39129;39130 61410;61411;61412 61410 3 VTLVFEHVDQDLR ______________________________ IKVTLVFEHVDQDLRTYLDKAPPPGLPAET K V T L R T 0 1 0 2 0 1 1 0 1 0 2 0 0 1 0 0 1 0 0 3 0 0 13 0 1569.8151 F8VZZ0;F8VZ51;Q6LC83;A0A024RBB6;P11802;F8VXD2;F8VYH9;F8VTV8;F8VWX7;F8W1L8 F8VZZ0 15 27 CDK4 Cyclin-dependent kinase 4 yes no 3 0.0012869 62.042 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9259100 0 9259100 9259100 0 9259100 0 0 0 14730 331 15131 39131 61413 61413 1 VTLVQTLEIQR IGEKLHRTELATQEKVTLVQTLEIQRQQSD TQEKVTLVQTLEIQRQQSDHDAERLREAIA K V T Q R Q 0 1 0 0 0 2 1 0 0 1 2 0 0 0 0 0 2 0 0 2 0 0 11 0 1298.7558 Q15149 Q15149 2565 2575 PLEC Plectin yes yes 2 5.9987E-17 157.96 2 2 1.8757 1.7942 28.157 4 Median 1.3304 1.4164 1.8943 2 0 Median 2.7072 2.3026 3.7474 2 0 Median 72233000 28510000 43722000 66418000 27187000 39231000 5814600 1323300 4491300 14731 1754 15132 39132;39133;39134;39135 61414;61415;61416;61417;61418;61419 61417 6 VTLVVGASQDIIPQLK AITQRMVDFAGVKDKVTLVVGASQDIIPQL TLVVGASQDIIPQLKKKYDVDTLDMVFLDH K V T L K K 1 0 0 1 0 2 0 1 0 2 2 1 0 0 1 1 1 0 0 3 0 0 16 0 1679.9822 B8XPJ7;B8XPJ8;A0A140VJG8;P21964;E7EMS6;E7EUU8;H7BZ45 B8XPJ7 112 127 COMT Catechol O-methyltransferase yes no 2 1.4592E-12 122.39 2 2 1.7088 1.605 43.354 4 Median 2.0034 2.2111 3.5593 2 0 Median 1.3177 1.0636 16.444 2 0 Median 127240000 40952000 86288000 112130000 34636000 77492000 15112000 6316000 8795700 14732 601 15133 39136;39137;39138;39139 61420;61421;61422;61423;61424;61425;61426 61422 7 VTLYECHSQGEIR KEGDPLVFATVGSNRVTLYECHSQGEIRLL NRVTLYECHSQGEIRLLQSYVDADADENFY R V T I R L 0 1 0 0 1 1 2 1 1 1 1 0 0 0 0 1 1 0 1 1 0 0 13 0 1590.746 O75530;B4DVW7;E9PJK2;B4DFK0 O75530 121 133 EED Polycomb protein EED yes no 2;3 3.4514E-05 67.234 2 2 1.6282 1.3908 12.366 3 Median 1.1155 1.156 NaN 1 0 Median 1.67 1.4258 3.5163 2 0 Median 33711000 14912000 18798000 24731000 11533000 13197000 8979900 3378900 5601000 14733 1407 15134 39140;39141;39142;39143 61427;61428;61429;61430;61431 61427 5 VTMENTFVNSLASQIIK YRAATYMIICQISVKVTMENTFVNSLASQI MENTFVNSLASQIIKTLTKIPSLIKDGLSC K V T I K T 1 0 2 0 0 1 1 0 0 2 1 1 1 1 0 2 2 0 0 2 0 0 17 0 1893.987 B2RWN5;Q9H583;Q5T3Q7 B2RWN5 272 288 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 3.0462E-14 116.84 2 1.6359 1.7888 NaN 1 Median 1.6359 1.7888 NaN 1 0 Median NaN NaN NaN 0 0 Median 66351000 15495000 50856000 66351000 15495000 50856000 0 0 0 14734 897 15135 39144;39145 61432;61433;61434 61432 717 3 VTMINAIPVASLDPIK KNFDMVIVYKDYSKKVTMINAIPVASLDPI TMINAIPVASLDPIKEWLNSCDLKYTEGVQ K V T I K E 2 0 1 1 0 0 0 0 0 3 1 1 1 0 2 1 1 0 0 2 0 0 16 0 1680.9484 Q9Y5B9 Q9Y5B9 868 883 SUPT16H FACT complex subunit SPT16 yes yes 2 8.5042E-25 138.45 2 4 0.94018 0.76875 37.119 6 Median 0.94917 1.0667 1.1201 2 0 Median 0.74656 0.59555 28.682 4 0 Median 208170000 104600000 103560000 159570000 77634000 81937000 48594000 26968000 21625000 14735 2148 15136;15137 39146;39147;39148;39149;39150;39151 61435;61436;61437;61438;61439;61440;61441;61442 61436 1999 7 VTMQNLNDR GGFGGDGGLLSGNEKVTMQNLNDRLASYLD LSGNEKVTMQNLNDRLASYLDKVRALEESN K V T D R L 0 1 2 1 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1089.5237 CON__P02533;P02533;CON__A2A4G1;CON__Q9Z2K1;CON__Q3ZAW8;Q6ZPD6;CON__Q7Z3Y9;Q7Z3Y9;CON__P08779;P08779;CON__P13645;P13645;CON__P02535-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 CON__P13645 148 156 KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 no no 2 0.0014339 79.906 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20474000 20474000 0 15538000 15538000 0 4936000 4936000 0 + 14736 1161;1150;1159 15138;15139 39152;39153;39154;39155 61443;61444;61445;61446;61447 61447 858 5 VTMVAWDR GQNLQGIEDKITKMKVTMVAWDRHDNTVIT DKITKMKVTMVAWDRHDNTVITAVNNMTLK K V T D R H 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 2 0 0 8 0 976.48004 Q8WWQ0;Q6RI45 Q8WWQ0 427 434 PHIP;BRWD3 PH-interacting protein;Bromodomain and WD repeat-containing protein 3 no no 2 0.015298 51.193 1 1.2593 1.3001 NaN 1 Median 1.2593 1.3001 NaN 1 0 Median NaN NaN NaN 0 0 Median 20045000 8213800 11831000 20045000 8213800 11831000 0 0 0 14737 1942;1860 15140 39156 61448 61448 1718 1 VTNEIFR PPADLRPDEEVFYCKVTNEIFRHYDDFFER DEEVFYCKVTNEIFRHYDDFFERTILCNSL K V T F R H 0 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 7 0 877.46577 D3DS96;Q9NRL2;Q05CW0;Q32ND1 D3DS96 29 35 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.029404 86.866 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13423000 0 13423000 13423000 0 13423000 0 0 0 14738 1187 15141 39157 61449 61449 1 VTNEYNESLLYSPEEPK QGNLSLPLNRELVEKVTNEYNESLLYSPEE NEYNESLLYSPEEPKILFSIREPIANRVFS K V T P K I 0 0 2 0 0 0 4 0 0 0 2 1 0 0 2 2 1 0 2 1 0 0 17 0 2010.9422 Q4G0N4;A0A0C4DGV3;A0A024R048;B7Z8V7 Q4G0N4 356 372 NADK2;FLJ30596 NAD kinase 2, mitochondrial yes no 2 0.00054186 59.898 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14739 1780 15142 39158 61450 61450 1 VTNMEVALDK ELEVLRSQERRLKEKVTNMEVALDKASLQF RLKEKVTNMEVALDKASLQFAECQDIIQRQ K V T D K A 1 0 1 1 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 2 0 0 10 0 1118.5642 Q5M9N0 Q5M9N0 806 815 CCDC158 Coiled-coil domain-containing protein 158 yes yes 2 0.007933 48.283 1 1.5002 1.4804 NaN 1 Median 1.5002 1.4804 NaN 1 0 Median NaN NaN NaN 0 0 Median 25055000 8299300 16755000 25055000 8299300 16755000 0 0 0 14740 1812 15143 39159 61451 61451 1673 1 VTNVLITPGK QHVTLKPNSKVLSTRVTNVLITPGKSQMDL VLSTRVTNVLITPGKSQMDLRKLLRKVDVE R V T G K S 0 0 1 0 0 0 0 1 0 1 1 1 0 0 1 0 2 0 0 2 0 0 10 0 1040.623 D2SNZ4;Q96HE9 D2SNZ4 281 290 PRR11 Proline-rich protein 11 yes no 2 0.0057684 67.704 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3854100 3854100 0 3854100 3854100 0 0 0 0 14741 1185 15144 39160 61452 61452 1 VTPAVVAYSENEEIVGLAAK KDGRAGVVANDAGDRVTPAVVAYSENEEIV VAYSENEEIVGLAAKQSRIRNISNTVMKVK R V T A K Q 4 0 1 0 0 0 3 1 0 1 1 1 0 0 1 1 1 0 1 4 0 0 20 0 2059.0837 Q0VDF9;B4DYI5;Q6P155;H7C2A1;B0YIZ1 Q0VDF9 34 53 HSPA14 Heat shock 70 kDa protein 14 yes no 2 2.8388E-06 64.104 1 1.4737 1.4915 NaN 1 Median 1.4737 1.4915 NaN 1 0 Median NaN NaN NaN 0 0 Median 6782100 1934600 4847500 6782100 1934600 4847500 0 0 0 14742 1697 15145 39161 61453 61453 1 VTPDIEESLLEPENEK EGFKNTLETSSLNFKVTPDIEESLLEPENE TPDIEESLLEPENEKILDILGETCKSEPVK K V T E K I 0 0 1 1 0 0 5 0 0 1 2 1 0 0 2 1 1 0 0 1 0 0 16 0 1840.8942 Q14151;A0PJ47 Q14151 200 215 SAFB2 Scaffold attachment factor B2 yes no 2 0.0076601 48.659 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3516100 0 3516100 3516100 0 3516100 0 0 0 14743 1727 15146 39162;39163 61454;61455 61454 2 VTPDLKPTEASSSAFR ASAPSSTPTGTTVVKVTPDLKPTEASSSAF TPDLKPTEASSSAFRLMPALGVSVADQKGK K V T F R L 2 1 0 1 0 0 1 0 0 0 1 1 0 1 2 3 2 0 0 1 0 0 16 1 1704.8683 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1044 1059 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 0.0077109 50.653 1 1 1.222 1.0639 NaN 1 Median NaN NaN NaN 0 0 Median 1.222 1.0639 NaN 1 0 Median 10523000 1100400 9422800 8031100 0 8031100 2492000 1100400 1391600 14744 135 15147 39164;39165 61456;61457 61456 2 VTPEPGAGPTQGLLR RGLLASDLNTDGDMRVTPEPGAGPTQGLLR VTPEPGAGPTQGLLRATEATAMAMGRGEGL R V T L R A 1 1 0 0 0 1 1 3 0 0 2 0 0 0 3 0 2 0 0 1 0 0 15 0 1491.8045 A0A024R7K7;A0A024R7M6;Q86YP4;C9JHD7;C9JJK9;V9GYX5;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4 A0A024R7K7 48 62 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.00016251 78.692 2 2 1.1364 1.1209 45.121 4 Median 0.66552 0.73984 8.005 2 0 Median 1.9339 1.6097 0.43629 2 0 Median 120230000 66660000 53568000 101870000 59952000 41915000 18360000 6708200 11652000 14745 229 15148 39166;39167;39168;39169 61458;61459;61460;61461 61459 4 VTPNEGLTVSFPFGK HKLEEGEVAMGRVVKVTPNEGLTVSFPFGK VTPNEGLTVSFPFGKIGTVSIFHMSDSYSE K V T G K I 0 0 1 0 0 0 1 2 0 0 1 1 0 2 2 1 2 0 0 2 0 0 15 0 1591.8246 Q14690 Q14690 1240 1254 PDCD11 Protein RRP5 homolog yes yes 2 5.1139E-06 110.08 2 2 1.2592 1.2159 2.201 4 Median 1.1046 1.24 2.2515 2 0 Median 1.4218 1.2039 0.8797 2 0 Median 308960000 137900000 171060000 172890000 83754000 89138000 136070000 54149000 81923000 14746 1741 15149 39170;39171;39172;39173 61462;61463;61464;61465;61466;61467;61468;61469;61470;61471 61464 10 VTQDATPGSALDK FSYGSGLAATLYSLKVTQDATPGSALDKIT LKVTQDATPGSALDKITASLCDLKSRLDSR K V T D K I 2 0 0 2 0 1 0 1 0 0 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1301.6463 Q8N995;A0A024R059;Q01581 Q8N995 377 389 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes no 2 0.0012909 74.962 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5652200 0 5652200 5652200 0 5652200 0 0 0 14747 37 15150 39174;39175 61472;61473 61472 2 VTQLLPQNVHSHNSISK KSQDVQRESEPLREKVTQLLPQNVHSHNSI QLLPQNVHSHNSISKPQKGGPLNKEYTNWE K V T S K P 0 0 2 0 0 2 0 0 2 1 2 1 0 0 1 3 1 0 0 2 0 0 17 0 1901.0119 A0A024R0F1;Q9UNY4 A0A024R0F1 258 274 TTF2 Transcription termination factor 2 yes no 3 0.0009992 36.112 1 0.36026 0.35962 NaN 1 Median 0.36026 0.35962 NaN 1 0 Median NaN NaN NaN 0 0 Median 14428000 11441000 2986400 14428000 11441000 2986400 0 0 0 14748 44 15151 39176 61474 61474 1 VTQPTGEEPALSNLGLPFSSFDHSK EKRIREFYQSRGLDRVTQPTGEEPALSNLG LSNLGLPFSSFDHSKAHYYRYDEQLNLCLE R V T S K A 1 0 1 1 0 1 2 2 1 0 3 1 0 2 3 4 2 0 0 1 0 0 25 0 2657.2973 Q9BSM1 Q9BSM1 135 159 PCGF1 Polycomb group RING finger protein 1 yes yes 3 0.04095 11.741 1 0.46806 0.4772 NaN 1 Median 0.46806 0.4772 NaN 1 0 Median NaN NaN NaN 0 0 Median 12167000 7598200 4568700 12167000 7598200 4568700 0 0 0 14749 2001 15152 39177 61475 61475 1 VTQSNFAVGYK WLAGYQMNFETAKSRVTQSNFAVGYKTDEF AKSRVTQSNFAVGYKTDEFQLHTNVNDGTE R V T Y K T 1 0 1 0 0 1 0 1 0 0 0 1 0 1 0 1 1 0 1 2 0 0 11 0 1212.6139 A0A1L1UHR1;P21796;B3KTS5;B4DEI3;C9JI87 A0A1L1UHR1 164 174 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 1.0463E-16 154.05 2 2 1.8941 2.0034 6.3376 4 Linear 1.6768 1.9918 0.079492 2 0 Median 2.1373 1.7855 0.97431 2 0 Median 1991900000 738100000 1253800000 1899600000 708770000 1190800000 92343000 29324000 63018000 14750 639 15153 39178;39179;39180;39181 61476;61477;61478;61479;61480;61481;61482;61483;61484 61479 9 VTSAVEALLSADSASR ARDGLGGLPDIVRDRVTSAVEALLSADSAS TSAVEALLSADSASRKQEVQAWDGEVRQVS R V T S R K 4 1 0 1 0 0 1 0 0 0 2 0 0 0 0 4 1 0 0 2 0 0 16 0 1575.8104 A0A140VJZ1;P45974 A0A140VJZ1 147 162 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 6.8097E-13 114.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24451000 0 24451000 24451000 0 24451000 0 0 0 14751 613 15154 39182 61485 61485 1 VTSLHNQAFEIEK RHEEESNILKAELNKVTSLHNQAFEIEKNL NKVTSLHNQAFEIEKNLKEQIIELQSKLDS K V T E K N 1 0 1 0 0 1 2 0 1 1 1 1 0 1 0 1 1 0 0 1 0 0 13 0 1514.7729 Q8TDY2 Q8TDY2 1158 1170 RB1CC1 RB1-inducible coiled-coil protein 1 yes yes 2 0.0037402 64.04 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1671600 1671600 0 0 0 0 1671600 1671600 0 14752 1935 15155 39183;39184 61486;61487 61487 2 VTSLLGAGR IGPMLDKEIPPSISRVTSLLGAGRQSLLRT PPSISRVTSLLGAGRQSLLRTAKDCRHTVW R V T G R Q 1 1 0 0 0 0 0 2 0 0 2 0 0 0 0 1 1 0 0 1 0 0 9 0 872.50797 Q9NSI6;A5PLN2 Q9NSI6 100 108 BRWD1 Bromodomain and WD repeat-containing protein 1 yes no 2 0.04983 47.082 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1038200 0 1038200 0 0 0 1038200 0 1038200 14753 2068 15156 39185 61488 61488 1 VTSVVFHPSQDLVFSASPDATIR SSEQILATLKGHTKKVTSVVFHPSQDLVFS SQDLVFSASPDATIRIWSVPNASCVQVVRA K V T I R I 2 1 0 2 0 1 0 0 1 1 1 0 0 2 2 4 2 0 0 4 0 0 23 0 2472.2649 Q9UMS4 Q9UMS4 267 289 PRPF19 Pre-mRNA-processing factor 19 yes yes 3 6.6677E-14 86.557 2 3 0.702 0.59563 NaN 1 Median NaN NaN NaN 0 0 Median 0.702 0.59563 NaN 1 0 Median 105990000 88126000 17861000 68317000 68317000 0 37671000 19810000 17861000 14754 2114 15157 39186;39187;39188;39189;39190 61489;61490;61491;61492;61493;61494 61490 6 VTTADPYASGK KVLHIPEFYVGSILRVTTADPYASGKISQF SILRVTTADPYASGKISQFLGICIQRSGRG R V T G K I 2 0 0 1 0 0 0 1 0 0 0 1 0 0 1 1 2 0 1 1 0 0 11 0 1108.5401 S4R3W9;A0A0A0MRF4;B4DIG4;A8K5D5;P49406 S4R3W9 21 31 MRPL19 39S ribosomal protein L19, mitochondrial yes no 2 0.02141 43.282 1 1.0886 0.92362 NaN 1 Median NaN NaN NaN 0 0 Median 1.0886 0.92362 NaN 1 0 Median 1170200 514370 655840 0 0 0 1170200 514370 655840 14755 465 15158 39191 61495;61496 61495 2 VTTAGTPMGSLSAR V T A R 2 1 0 0 0 0 0 2 0 0 1 0 1 0 1 2 3 0 0 1 0 0 14 0 1347.6816 REV__Q8WXI7 yes yes 2 0.001649 70.908 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 14756 2183 15159 39192 61497 61497 1 VTTINQEIQK DCNKVQEKRGAVYERVTTINQEIQKIKLGI AVYERVTTINQEIQKIKLGIQQLKDAAERE R V T Q K I 0 0 1 0 0 2 1 0 0 2 0 1 0 0 0 0 2 0 0 1 0 0 10 0 1172.6401 A0A024R8Y0;Q9BZD4;E9PQC4 A0A024R8Y0 391 400 CDCA1;NUF2 Kinetochore protein Nuf2 yes no 2 0.00015618 95.502 2 0.87943 0.94408 5.7795 2 Median 0.87943 0.94408 5.7795 2 0 Median NaN NaN NaN 0 0 Median 53826000 29938000 23887000 53826000 29938000 23887000 0 0 0 14757 264 15160 39193;39194 61498;61499 61498 2 VTTVVATLGQGPER ______________________________ KVTTVVATLGQGPERSQEVAYTDIKVIGNG K V T E R S 1 1 0 0 0 1 1 2 0 0 1 0 0 0 1 0 3 0 0 3 0 0 14 0 1426.778 Q68D16;A8MT37;A0A024R0L5;P49840;M0QYV0 Q68D16 5 18 DKFZp686D0638;GSK3A Glycogen synthase kinase-3 alpha yes no 2 0.0010152 74.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4009900 0 4009900 4009900 0 4009900 0 0 0 14758 51 15161 39195 61500 61500 1 VTTVVATPGQGPDRPQEVSYTDTK AFGSMKVSRDKDGSKVTTVVATPGQGPDRP QGPDRPQEVSYTDTKVIGNGSFGVVYQAKL K V T T K V 1 1 0 2 0 2 1 2 0 0 0 1 0 0 3 1 5 0 1 4 0 0 24 1 2545.266 Q6FI27;B5BUC0;P49841 Q6FI27 37 60 GSK3B Glycogen synthase kinase-3 beta yes no 3 1.1722E-08 59.814 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3378800 0 3378800 3378800 0 3378800 0 0 0 14759 1078 15162 39196 61501 61501 1 VTVCQALR ARTLGMAISERPDLRVTVCQALRTLITKGC SERPDLRVTVCQALRTLITKGCQAEADRAE R V T L R T 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 945.50659 B3KMR5;Q5JTH9 B3KMR5 659 666 RRP12 RRP12-like protein yes no 2 0.0031872 100.74 3 1 1.4453 1.5427 NaN 1 Median 1.4453 1.5427 NaN 1 0 Median NaN NaN NaN 0 0 Median 73171000 45176000 27995000 73171000 45176000 27995000 0 0 0 14760 907 15163 39197;39198;39199;39200 61502;61503;61504;61505;61506 61504 5 VTVDDLPNR VAYDPEDETILEEAKVTVDDLPNRMCADVR ILEEAKVTVDDLPNRMCADVRRNSVERPAE K V T N R M 0 1 1 2 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 9 0 1027.5298 Q9BTC0 Q9BTC0 1439 1447 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0043738 69.423 1 0.77698 0.83788 NaN 1 Median 0.77698 0.83788 NaN 1 0 Median NaN NaN NaN 0 0 Median 26165000 14250000 11915000 26165000 14250000 11915000 0 0 0 14761 2002 15164 39201 61507;61508 61508 2 VTVDTGVIPASEEK KESQRKFEEETVKSKVTVDTGVIPASEEKA KVTVDTGVIPASEEKAETPTAAEDDNEGDK K V T E K A 1 0 0 1 0 0 2 1 0 1 0 1 0 0 1 1 2 0 0 3 0 0 14 0 1443.7457 Q8N5A0;A0A087WUT6;O60841;A0JLR8;Q05CQ1 Q8N5A0 285 298 EIF5B Eukaryotic translation initiation factor 5B yes no 2 7.1736E-10 122.7 2 0.86075 0.87464 14.406 2 Median 0.86075 0.87464 14.406 2 0 Median NaN NaN NaN 0 0 Median 26410000 14574000 11836000 26410000 14574000 11836000 0 0 0 14762 414 15165 39202;39203 61509;61510;61511 61511 3 VTVGDAATTAAASSSSVTR TEPSSPLSDPSDIIRVTVGDAATTAAASSS DAATTAAASSSSVTRDLSLKTEDDQKDMSR R V T T R D 5 1 0 1 0 0 0 1 0 0 0 0 0 0 0 4 4 0 0 3 0 0 19 0 1750.8697 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 446 464 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 3.0289E-05 69.431 1 1 1.0092 0.86927 NaN 1 Median NaN NaN NaN 0 0 Median 1.0092 0.86927 NaN 1 0 Median 2761600 1477600 1284000 0 0 0 2761600 1477600 1284000 14763 2109 15166 39204;39205 61512;61513 61512 2 VTVLFAGQHIAK TFSVWYVPEVTGTHKVTVLFAGQHIAKSPF THKVTVLFAGQHIAKSPFEVYVDKSQGDAS K V T A K S 2 0 0 0 0 1 0 1 1 1 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1282.7398 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 356 367 FLNA Filamin-A yes no 2 0.052665 42.19 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14764 1504 15167 39206 61514 61514 1 VTVLGHVQR DIKNLVVKRLGYDTRVTVLGHVQRGGTPSA LGYDTRVTVLGHVQRGGTPSAFDRILGSRM R V T Q R G 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 3 0 0 9 0 1007.5876 A0A024R0Y5;P08237;A0A0S2Z4A1;B4E162;P17858;Q7L2M7 A0A024R0Y5 293 301 PFKM;PFKL ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type;ATP-dependent 6-phosphofructokinase, liver type no no 2;3 8.5382E-05 103.74 4 2 1.7881 1.8407 37.133 5 Median 1.9127 2.1444 9.5888 3 0 Median 1.214 1.0611 9.6585 2 0 Median 242290000 76692000 165600000 238690000 74912000 163780000 3604700 1779800 1824900 14765 61;1495 15168 39207;39208;39209;39210;39211;39212 61515;61516;61517;61518;61519;61520;61521;61522;61523;61524 61520 10 VTVLVMCHTR ______________________________ ______________________________ - V T T R E 0 1 0 0 1 0 0 0 1 0 1 0 1 0 0 0 2 0 0 3 0 0 10 0 1214.6264 A0A0D9SEM9 A0A0D9SEM9 1 10 DDX39A yes yes 2 0.012123 42.109 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14766 521 15169 39213 61525 61525 381 1 VTVMASLR PLPEYHVRIAGFDERVTVMASLRRPKRIII IAGFDERVTVMASLRRPKRIIIRGHDEREH R V T L R R 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 2 0 0 8 0 875.48987 P78527 P78527 3726 3733 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.025751 42.599 1 1.2541 1.3694 NaN 1 Median 1.2541 1.3694 NaN 1 0 Median NaN NaN NaN 0 0 Median 38940000 18692000 20248000 38940000 18692000 20248000 0 0 0 14767 1665 15170 39214 61526 61526 1465 1 VTVNPGLLVPLDVK SRSLTGCWSAGTISKVTVNPGLLVPLDVKL KVTVNPGLLVPLDVKLDPAVQQLKNQEKEE K V T V K L 0 0 1 1 0 0 0 1 0 0 3 1 0 0 2 0 1 0 0 4 0 0 14 0 1462.8759 CON__Q6KB66-1;Q6KB66 CON__Q6KB66-1 58 71 KRT80 Keratin, type II cytoskeletal 80 yes no 2 0.016025 48.004 1 1 0.66578 0.58591 NaN 1 Median NaN NaN NaN 0 0 Median 0.66578 0.58591 NaN 1 0 Median 7018400 6390000 628350 5776300 5776300 0 1242100 613720 628350 + 14768 1177 15171 39215;39216 61527;61528 61527 2 VTVPLVR SPVPVPRAVPVKRPRVTVPLVRCVKTNVPV AVPVKRPRVTVPLVRCVKTNVPVKLFARST R V T V R C 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 3 0 0 7 0 782.50142 A8K4T9;Q53GL6;Q5QPL9;Q9UKM9;Q5QPM0;Q5QPM1 A8K4T9 134 140 RALY RNA-binding protein Raly yes no 2 0.024609 89.903 2 0.93733 1.0528 6.7717 2 Median 0.93733 1.0528 6.7717 2 0 Median NaN NaN NaN 0 0 Median 108410000 56626000 51788000 108410000 56626000 51788000 0 0 0 14769 741 15172 39217;39218 61529;61530 61529 2 VTWDSSFCAVNPR AVKNDQCYDDIRVSRVTWDSSFCAVNPRFV SRVTWDSSFCAVNPRFVAIIIEASGGGAFL R V T P R F 1 1 1 1 1 0 0 0 0 0 0 0 0 1 1 2 1 1 0 2 0 0 13 0 1537.6984 Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B4DMH3;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7 Q53G58 32 44 CORO1C Coronin;Coronin-1C yes no 2 1.0452E-05 98.04 2 2 2.0803 2.1145 NaN 1 Median 2.0803 2.1145 NaN 1 0 Median NaN NaN NaN 0 0 Median 49024000 6921100 42103000 39426000 6921100 32505000 9597900 0 9597900 14770 340 15173 39219;39220;39221;39222 61531;61532;61533;61534;61535;61536;61537 61535 7 VTWLVSWTENIQGSIK PPPGHKWKEVRHDNKVTWLVSWTENIQGSI TWLVSWTENIQGSIKYIMLNPSSRIKGEKD K V T I K Y 0 0 1 0 0 1 1 1 0 2 1 1 0 0 0 2 2 2 0 2 0 0 16 0 1859.9781 P11387;B9EG90 P11387 410 425 TOP1 DNA topoisomerase 1 yes no 2 2.9651E-06 90.697 2 1.2806 1.0518 NaN 1 Median NaN NaN NaN 0 0 Median 1.2806 1.0518 NaN 1 0 Median 38046000 18754000 19292000 0 0 0 38046000 18754000 19292000 14771 1470 15174 39223;39224 61538;61539 61538 2 VTWVSQASADQR KKRYYDRVTGVSSFRVTWVSQASADQRAGR SFRVTWVSQASADQRAGRAGRTEPGHCYRL R V T Q R A 2 1 0 1 0 2 0 0 0 0 0 0 0 0 0 2 1 1 0 2 0 0 12 0 1346.6579 Q8IY37;F5H3Y4 Q8IY37 657 668 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 1.4464E-05 105.98 2 2 1.3456 1.3528 NaN 1 Median 1.3456 1.3528 NaN 1 0 Median NaN NaN NaN 0 0 Median 13178000 4552300 8625900 11090000 4552300 6537900 2088000 0 2088000 14772 1897 15175 39225;39226;39227;39228 61540;61541;61542;61543;61544;61545 61542 6 VTYHPDGPEGQAYDVDFTPPFR KMVSGMVKHITGSYKVTYHPDGPEGQAYDV PEGQAYDVDFTPPFRRINMVEELEKALGMK K V T F R R 1 1 0 3 0 1 1 2 1 0 0 0 0 2 4 0 2 0 2 2 0 0 22 0 2507.1394 Q15046 Q15046 371 392 KARS Lysine--tRNA ligase yes yes 3 0.00078103 31.176 1 1.8585 1.8635 NaN 1 Median 1.8585 1.8635 NaN 1 0 Median NaN NaN NaN 0 0 Median 17874000 8318800 9555600 17874000 8318800 9555600 0 0 0 14773 1749 15176 39229 61546 61546 1 VTYTPMAPGSYLISIK SKVKMDCQECPEGYRVTYTPMAPGSYLISI TYTPMAPGSYLISIKYGGPYHIGGSPFKAK R V T I K Y 1 0 0 0 0 0 0 1 0 2 1 1 1 0 2 2 2 0 2 1 0 0 16 0 1739.9168 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2485 2500 FLNA;FLJ00119 Filamin-A yes no 2 0.00076132 44.616 1 1.3456 1.403 NaN 1 Median 1.3456 1.403 NaN 1 0 Median NaN NaN NaN 0 0 Median 12270000 5203300 7066500 12270000 5203300 7066500 0 0 0 14774 1504 15177 39230 61547;61548 61547 1270 2 VTYVVLDEADR DMLAANSGRVTNLRRVTYVVLDEADRMFDM NLRRVTYVVLDEADRMFDMGFEPQVMRIVD R V T D R M 1 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 3 0 0 11 0 1278.6456 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 523 533 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.00029522 88.681 1 0.82047 0.85558 NaN 1 Median 0.82047 0.85558 NaN 1 0 Median NaN NaN NaN 0 0 Median 13341000 6552300 6788800 13341000 6552300 6788800 0 0 0 14775 511 15178 39231 61549 61549 1 VVAEVYDQER KAIQALNGRWFAGRKVVAEVYDQERFDNSD FAGRKVVAEVYDQERFDNSDLSA_______ K V V E R F 1 1 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 10 0 1206.5881 A0A0J9YYL3;A0A0J9YXJ8;A0A0J9YVP6;A0A0J9YXX5;Q9UHX1 A0A0J9YYL3 488 497 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.011936 56.729 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14776 537 15179 39232 61550 61550 1 VVAVFVQGPAWQFK VVDQPLKLMPQDWDRVVAVFVQGPAWQFKG RVVAVFVQGPAWQFKGWPWLLPDGSPVDIF R V V F K G 2 0 0 0 0 2 0 1 0 0 0 1 0 2 1 0 0 1 0 4 0 0 14 0 1574.8609 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9 Q6P1J9 442 455 CDC73 Parafibromin yes no 2 3.2075E-09 113.62 1 2 1.5934 1.4785 8.5936 3 Plateau 1.5083 1.4786 NaN 1 0 Median 1.6115 1.2747 0.92418 2 0 Median 28609000 11622000 16987000 20734000 8746300 11987000 7875500 2875600 4999900 14777 1851 15180 39233;39234;39235 61551;61552;61553;61554;61555 61552 5 VVDALGNAIDGK GAIVDVPVGEELLGRVVDALGNAIDGKGPI LGRVVDALGNAIDGKGPIGSKTRRRVGLKA R V V G K G 2 0 1 2 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1170.6245 V9HW26;P25705;K7ERX7;B4DGW3;K7EK77;K7EQH4;K7EJP1;K7ENJ4 V9HW26 150 161 HEL-S-123m;ATP5A1 ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.00016048 91.937 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6181500 0 6181500 6181500 0 6181500 0 0 0 14778 1518 15181 39236 61556 61556 1 VVDALNQGLPR KESGAINTSLFVLGKVVDALNQGLPRVPYR VLGKVVDALNQGLPRVPYRDSKLTRLLQDS K V V P R V 1 1 1 1 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 2 0 0 11 0 1180.6564 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 307 317 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.050776 55.112 1 1.1157 0.95932 NaN 1 Median NaN NaN NaN 0 0 Median 1.1157 0.95932 NaN 1 0 Median 6746100 2765800 3980200 0 0 0 6746100 2765800 3980200 14779 1745 15182 39237 61557 61557 0 VVDHVLGPLNSSTSLGQNTSTSSNLQR VSTTGTATDLESSAKVVDHVLGPLNSSTSL TSLGQNTSTSSNLQRTVVTVGNKNSHLDGS K V V Q R T 0 1 3 1 0 2 0 2 1 0 4 0 0 0 1 6 3 0 0 3 0 0 27 0 2810.4159 Q03164 Q03164 2242 2268 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 3 5.4514E-23 97.542 2 2 1.3833 1.2682 33.742 4 Median 0.86508 0.91658 14.588 2 0 Median 1.9563 1.6131 2.6844 2 0 Median 82816000 38075000 44742000 50789000 26630000 24160000 32027000 11445000 20582000 14780 1680 15183 39238;39239;39240;39241 61558;61559;61560;61561;61562;61563;61564;61565;61566;61567 61563 10 VVDLAPLHLDAR KALGYMERAAESYGKVVDLAPLHLDARISL YGKVVDLAPLHLDARISLSTLQQQLGQPEK K V V A R I 2 1 0 2 0 0 0 0 1 0 3 0 0 0 1 0 0 0 0 2 0 0 12 0 1317.7405 Q9Y5Q9;H7C0C0 Q9Y5Q9 482 493 GTF3C3 General transcription factor 3C polypeptide 3 yes no 3 0.013426 33.685 2 1.0545 1.1294 9.9476 2 Median 1.0545 1.1294 9.9476 2 0 Median NaN NaN NaN 0 0 Median 41691000 21213000 20478000 41691000 21213000 20478000 0 0 0 14781 2150 15184 39242;39243 61568;61569 61569 2 VVDLLAPYAK MEMSVEQEILVTGIKVVDLLAPYAKGGKIG VTGIKVVDLLAPYAKGGKIGLFGGAGVGKT K V V A K G 2 0 0 1 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 2 0 0 10 0 1087.6277 H0YH81;Q0QEN7;V9HW31;P06576;F8W079 H0YH81 126 135 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 2 0.004316 61.679 1 2 1.4822 1.5249 64.073 3 Plateau 1.4822 1.5256 NaN 1 0 Median 0.58571 0.50288 0.017265 2 0 Median 14325000 6722200 7602600 11613000 5071700 6541800 2711300 1650500 1060800 14782 1292 15185 39244;39245;39246 61570;61571;61572 61570 3 VVDLMAHMASK KLISWYDNEFGYSNRVVDLMAHMASKE___ YSNRVVDLMAHMASKE______________ R V V S K E 2 0 0 1 0 0 0 0 1 0 1 1 2 0 0 1 0 0 0 2 0 0 11 0 1200.5995 V9HVZ4;P04406;Q2TSD0;E7EUT5;Q16768 V9HVZ4 324 334 HEL-S-162eP;GAPDH;GAPD Glyceraldehyde-3-phosphate dehydrogenase yes no 3 0.0039268 49.934 1 4.0693 4.4958 NaN 1 Median 4.0693 4.4958 NaN 1 0 Median NaN NaN NaN 0 0 Median 44633000 7664200 36969000 44633000 7664200 36969000 0 0 0 14783 1442 15186 39247 61573 61573 1147;1148 1 VVDPFSK NKRLTKGGKKGAKKKVVDPFSKKDWYDVKA GKKGAKKKVVDPFSKKDWYDVKAPAMFNIR K V V S K K 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 2 0 0 7 0 790.4225 Q6NXR8;A8K4W0;P61247;B7Z3M5;H0Y8L7;E9PFI5;H0Y9Y4;D6RI02 Q6NXR8 21 27 RPS3A 40S ribosomal protein S3a yes no 2 0.053742 53.351 1 0.90082 0.72253 NaN 1 Median NaN NaN NaN 0 0 Median 0.90082 0.72253 NaN 1 0 Median 18861000 9717600 9143900 0 0 0 18861000 9717600 9143900 14784 742 15187 39248 61574 61574 1 VVDQACTLEK IKFHSAAMDEKVIGKVVDQACTLEKAQVES KVIGKVVDQACTLEKAQVESCQLNNRDRRN K V V E K A 1 0 0 1 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1161.57 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1286 1295 CASC5 Protein CASC5 yes no 2 6.0556E-08 113.71 1 2 1.3591 1.0828 27.649 3 Median 0.67266 0.6801 NaN 1 0 Median 1.3642 1.0973 1.8818 2 0 Median 18064000 8280200 9783700 13131000 6211700 6919400 4932800 2068500 2864300 14785 1928 15188 39249;39250;39251 61575;61576;61577;61578;61579 61576 5 VVDRDSEEAEIIR DPIDVNYEKLKTDIKVVDRDSEEAEIIRKY IKVVDRDSEEAEIIRKYVKNTHATTHNAYD K V V I R K 1 2 0 2 0 0 3 0 0 2 0 0 0 0 0 1 0 0 0 2 0 0 13 1 1529.7686 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 803 815 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 1.0235E-12 129.84 4 1 0.54693 0.62942 19.821 5 Median 0.54103 0.60524 6.5647 4 0 Median 1.0059 0.92848 NaN 1 0 Median 593560000 383200000 210360000 576140000 374670000 201470000 17428000 8529900 8897700 14786 139 15189 39252;39253;39254;39255;39256 61580;61581;61582;61583;61584;61585;61586 61584 7 VVDRDSEEAEIIRK DPIDVNYEKLKTDIKVVDRDSEEAEIIRKY KVVDRDSEEAEIIRKYVKNTHATTHNAYDL K V V R K Y 1 2 0 2 0 0 3 0 0 2 0 1 0 0 0 1 0 0 0 2 0 0 14 2 1657.8635 A0A024R3T8;P09874;B2R5W3 A0A024R3T8 803 816 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 1.2492E-11 118.13 1 1 1.1422 1.0674 NaN 1 Median NaN NaN NaN 0 0 Median 1.1422 1.0674 NaN 1 0 Median 22685000 16947000 5737600 11393000 11393000 0 11291000 5553600 5737600 14787 139 15190 39257;39258 61587;61588 61587 2 VVEATNSVTAVR SNQQLEDLINQGREKVVEATNSVTAVRIQP REKVVEATNSVTAVRIQPLEDIISAVWKEN K V V V R I 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0 4 0 0 12 0 1244.6725 A4LAA3;P46100;B4DHH8;B4DLE1;B4DLW1 A4LAA3 2335 2346 ATRX Transcriptional regulator ATRX yes no 2 6.1121E-09 148.56 2 0.78254 0.88322 1.6882 2 Median 0.78254 0.88322 1.6882 2 0 Median NaN NaN NaN 0 0 Median 119780000 69003000 50773000 119780000 69003000 50773000 0 0 0 14788 672 15191 39259;39260 61589;61590;61591;61592 61590 4 VVEAVNSDSDSEFGIPK SDTVPKPKRAPKQKKVVEAVNSDSDSEFGI EAVNSDSDSEFGIPKKTTTPKGKGRGAKKR K V V P K K 1 0 1 2 0 0 2 1 0 1 0 1 0 1 1 3 0 0 0 3 0 0 17 0 1791.8527 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5 Q71UH4 1488 1504 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 3.9871E-09 105.65 2 1 0.80823 0.81353 3.4244 2 Median 0.80823 0.81353 3.4244 2 0 Median NaN NaN NaN 0 0 Median 42952000 23113000 19839000 40048000 23113000 16935000 2904400 0 2904400 14789 1679 15192 39261;39262;39263 61593;61594;61595;61596;61597;61598;61599 61598 7 VVEELTR GSGMKREATADDLIKVVEELTRIH______ ATADDLIKVVEELTRIH_____________ K V V T R I 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 7 0 844.46543 Q16531;B4DSA8;B4DZP5 Q16531 1132 1138 DDB1 DNA damage-binding protein 1 yes no 2 0.010632 110.61 1 2 1.1551 0.93953 13.575 3 Median 0.65176 0.75722 NaN 1 0 Median 1.1641 0.95607 2.468 2 0 Median 211990000 120410000 91584000 179070000 105440000 73631000 32919000 14966000 17953000 14790 1770 15193 39264;39265;39266 61600;61601;61602;61603;61604;61605 61601 6 VVEGTPLIDGR WFLIQVLFYLLPIGKVVEGTPLIDGRRLKY PIGKVVEGTPLIDGRRLKYRLNGFYAFILT K V V G R R 0 1 0 1 0 0 1 2 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1154.6295 Q14739;A0A024R3R5 Q14739 280 290 LBR Lamin-B receptor yes no 2 0.00076687 72.643 1 1.7768 2.0131 NaN 1 Median 1.7768 2.0131 NaN 1 0 Median NaN NaN NaN 0 0 Median 48064000 19249000 28815000 48064000 19249000 28815000 0 0 0 14791 1743 15194 39267 61606 61606 1 VVEIAPAAHLDPQLR HLYERDCSIQRRHQKVVEIAPAAHLDPQLR VVEIAPAAHLDPQLRTRLTSDSVKLAKQVG K V V L R T 3 1 0 1 0 1 1 0 1 1 2 0 0 0 2 0 0 0 0 2 0 0 15 0 1627.9046 A0A024R5C5;P11498;E9PRE7 A0A024R5C5 274 288 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 3 6.8846E-05 54.812 2 1.2593 1.3026 29.089 2 Median 1.2593 1.3026 29.089 2 0 Median NaN NaN NaN 0 0 Median 32768000 13220000 19548000 32768000 13220000 19548000 0 0 0 14792 176 15195 39268;39269 61607;61608 61608 2 VVEIVDEK TTDISLIFAALKDSKVVEIVDEKVRRREEP AALKDSKVVEIVDEKVRRREEPEKWPLPPI K V V E K V 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 8 0 929.50696 E5RH50;A0A0B4J210;Q6PKG0;H0YC73;H0YBW1 E5RH50 261 268 LARP1 La-related protein 1 yes no 2 0.02193 64.207 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6686200 0 6686200 6686200 0 6686200 0 0 0 14793 500 15196 39270 61609;61610 61610 2 VVENLQDDFDFNYK QDVRKRVQDLEQKMKVVENLQDDFDFNYKT KVVENLQDDFDFNYKTLKSQGDMQDLNGNN K V V Y K T 0 0 2 3 0 1 1 0 0 0 1 1 0 2 0 0 0 0 1 2 0 0 14 0 1744.7944 G8JLH9;B4DNP0;B7ZA24;B4DVR6;B5BTZ6;P40763 G8JLH9 66 79 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 2 1.6091E-09 119.45 2 1 2.0739 2.0916 10.764 2 Median 2.0739 2.0916 10.764 2 0 Median NaN NaN NaN 0 0 Median 31327000 9314400 22012000 28720000 9314400 19406000 2606500 0 2606500 14794 1015 15197 39271;39272;39273 61611;61612;61613;61614;61615;61616 61613 6 VVESGGPEILK SFMSQLLSSNNFLKKVVESGGPEILKGLEE FLKKVVESGGPEILKGLEERLLETVLGYIS K V V L K G 0 0 0 0 0 0 2 2 0 1 1 1 0 0 1 1 0 0 0 2 0 0 11 0 1126.6234 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B4E263;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1534 1544 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.4269E-05 107.15 2 2 1.112 1.0631 2.3133 4 Median 0.9526 1.0842 1.687 2 0 Median 1.2958 1.0471 1.0544 2 0 Median 298220000 153670000 144550000 284120000 147310000 136820000 14098000 6367000 7731100 14795 897 15198 39274;39275;39276;39277 61617;61618;61619;61620;61621;61622;61623;61624;61625;61626 61619 10 VVFAELACR HTIQICKLSGGQKARVVFAELACREPDVLI GGQKARVVFAELACREPDVLILDEPTNNLD R V V C R E 2 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 1063.5485 Q8NE71;Q2L6I2;Q59F96;H0YGW7;A0A0G2JIC2 Q8NE71 751 759 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.035569 43.808 1 0.57501 0.50857 NaN 1 Median NaN NaN NaN 0 0 Median 0.57501 0.50857 NaN 1 0 Median 1491500 888370 603130 0 0 0 1491500 888370 603130 14796 1926 15199 39278 61627 61627 1 VVFELFSDVCPK RCFFDIAINNQPAGRVVFELFSDVCPKTCE AGRVVFELFSDVCPKTCENFRCLCTGEKGT R V V P K T 0 0 0 1 1 0 1 0 0 0 1 1 0 2 1 1 0 0 0 3 0 0 12 0 1438.7166 C9JT64;C9J679;C9JN15;Q6P432;Q32LZ0;Q2NKQ6;E9PG73;Q13427 C9JT64 24 35 PPIG Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase G yes no 2 0.00022937 100.48 3 2 0.7967 0.83169 47.286 4 Linear 0.75084 0.76501 16.892 2 0 Median 0.43177 0.34523 9.5642 2 0 Median 23629000 14698000 8930800 18974000 11652000 7321600 4655200 3046100 1609200 14797 1131 15200 39279;39280;39281;39282;39283 61628;61629;61630;61631;61632;61633;61634 61630 7 VVFPSGEVVEQK DARRWVRALRRSPVKVVFPSGEVVEQKRAP PVKVVFPSGEVVEQKRAPGKQPRKAPSEAS K V V Q K R 0 0 0 0 0 1 2 1 0 0 0 1 0 1 1 1 0 0 0 4 0 0 12 0 1316.6976 Q9HC36;I3L0T6 Q9HC36 40 51 RNMTL1 rRNA methyltransferase 3, mitochondrial yes no 2 0.023315 37.344 2 0.9563 0.82418 1.5902 2 Median NaN NaN NaN 0 0 Median 0.9563 0.82418 1.5902 2 0 Median 2790000 1148200 1641800 0 0 0 2790000 1148200 1641800 14798 2051 15201 39284;39285 61635;61636 61636 2 VVFQEFR VLEGIRICRQGFPNRVVFQEFRQRYEILTP CRQGFPNRVVFQEFRQRYEILTPNSIPKGF R V V F R Q 0 1 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 7 0 923.4865 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 712 718 MYH9 Myosin-9 yes no 2 0.013075 86.866 2 1 2.7374 2.2312 NaN 1 Median NaN NaN NaN 0 0 Median 2.7374 2.2312 NaN 1 0 Median 40618000 33566000 7052400 31071000 31071000 0 9547700 2495400 7052400 14799 81 15202 39286;39287;39288 61637;61638;61639 61638 3 VVFRDPYR KDIIHDPGRGAPLAKVVFRDPYRFKKRTEL RGAPLAKVVFRDPYRFKKRTELFIAAEGIH K V V Y R F 0 2 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 2 0 0 8 1 1050.5611 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 61 68 RPL8 60S ribosomal protein L8 yes no 3 0.004415 74.255 2 0.72975 0.83554 3.0784 2 Median 0.72975 0.83554 3.0784 2 0 Median NaN NaN NaN 0 0 Median 528910000 291060000 237840000 528910000 291060000 237840000 0 0 0 14800 1653 15203 39289;39290 61640;61641;61642 61640 3 VVGAVIDQGLITR KRRRVLNRERRLRHRVVGAVIDQGLITRHH HRVVGAVIDQGLITRHHLKKRASSARANIT R V V T R H 1 1 0 1 0 1 0 2 0 2 1 0 0 0 0 0 1 0 0 3 0 0 13 0 1339.7823 E9PLD3;A0A0B4J220;L0R588;E9PRG8 E9PLD3 36 48 C11orf98;C11orf48 Uncharacterized protein C11orf98 yes no 2 2.7519E-13 126.19 3 2 0.67755 0.68188 25.721 4 Median 0.73595 0.85638 4.3604 2 0 Median 0.63511 0.55008 2.511 2 0 Median 628610000 377400000 251210000 536830000 320910000 215920000 91786000 56493000 35293000 14801 501 15204 39291;39292;39293;39294;39295 61643;61644;61645;61646;61647;61648;61649;61650;61651 61647 9 VVGCSCVVVK WVGLCKIDREGKPRKVVGCSCVVVKDYGKE GKPRKVVGCSCVVVKDYGKESQAKDVIEEY K V V V K D 0 0 0 0 2 0 0 1 0 0 0 1 0 0 0 1 0 0 0 5 0 0 10 0 1105.5624 P25398 P25398 103 112 RPS12 40S ribosomal protein S12 yes yes 2 2.2478E-09 128.38 2 2 1.3899 1.3213 17.395 4 Median 1.3169 1.5274 6.0816 2 0 Median 1.4316 1.144 5.9526 2 0 Median 515870000 218350000 297530000 490310000 207900000 282410000 25563000 10442000 15121000 14802 1515 15205 39296;39297;39298;39299 61652;61653;61654;61655;61656;61657;61658;61659 61654 8 VVGEDVATSSSAK SSSALYPVGRVSKEKVVGEDVATSSSAKKA EKVVGEDVATSSSAKKATGRKKSSSHDSGT K V V A K K 2 0 0 1 0 0 1 1 0 0 0 1 0 0 0 3 1 0 0 3 0 0 13 0 1248.6198 Q03164;E9PR05 Q03164 916 928 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 2.8581E-13 125.74 2 2 1.3412 1.2008 30.057 4 Median 0.91062 0.9342 2.3638 2 0 Median 2.0012 1.5682 4.6031 2 0 Median 46279000 20686000 25593000 39745000 18499000 21246000 6534600 2186900 4347700 14803 1680 15206 39300;39301;39302;39303 61660;61661;61662;61663;61664;61665;61666;61667 61660 8 VVGESLSPAFHLQLEESTGSR CGQIHKALQGISGLKVVGESLSPAFHLQLE SPAFHLQLEESTGSREQDVRLLQEIVDQCM K V V S R E 1 1 0 0 0 1 3 2 1 0 3 0 0 1 1 4 1 0 0 2 0 0 21 0 2242.123 A0A024R277;O15269;Q6NUL7 A0A024R277 385 405 SPTLC1 Serine palmitoyltransferase 1 yes no 3 0.036253 21.27 2 0.62288 0.63292 1.3534 2 Median 0.62288 0.63292 1.3534 2 0 Median NaN NaN NaN 0 0 Median 33701000 18594000 15107000 33701000 18594000 15107000 0 0 0 14804 107 15207 39304;39305 61668;61669 61669 1 VVGGFDR TNTIISHYDGRQFPKVVGGFDRVLLDAPCS YDGRQFPKVVGGFDRVLLDAPCSGTGVISK K V V D R V 0 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 0 748.38679 P46087 P46087 450 456 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.0099339 114.19 2 1 1.0555 1.1198 11.415 3 Median 1.0179 1.1641 5.4881 2 0 Median 1.1831 0.96655 NaN 1 0 Median 291320000 139450000 151870000 275490000 132250000 143240000 15834000 7201600 8632900 14805 1570 15208 39306;39307;39308 61670;61671;61672;61673;61674 61671 5 VVGSVGQHTGEPVEELALSHCGR STDGVIRAVNILPNRVVGSVGQHTGEPVEE TGEPVEELALSHCGRFLASSGHDQRLKFWD R V V G R F 1 1 0 0 1 1 3 4 2 0 2 0 0 0 1 2 1 0 0 4 0 0 23 0 2417.1758 Q9H6Y2;G3V1J0;B4DE13 Q9H6Y2 286 308 WDR55 WD repeat-containing protein 55 yes no 4 0.0028575 31.775 2 0.9032 0.78427 7.1649 2 Median NaN NaN NaN 0 0 Median 0.9032 0.78427 7.1649 2 0 Median 9516800 4570600 4946200 0 0 0 9516800 4570600 4946200 14806 2039 15209 39309;39310 61675;61676;61677 61675 2 VVHIIQAR LSLDINKLPGEKLGRVVHIIQAREPSLRDS PGEKLGRVVHIIQAREPSLRDSNPEEIEID R V V A R E 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 0 8 0 934.57123 A0A024RCR5;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;X5CF57;A0A0G2JHN8;A0A140T9I1 A0A024RCR5 665 672 BRD2 Bromodomain-containing protein 2 yes no 3 0.002782 76.035 2 0.66656 0.70332 20.868 2 Median 0.66656 0.70332 20.868 2 0 Median NaN NaN NaN 0 0 Median 62547000 35682000 26865000 62547000 35682000 26865000 0 0 0 14807 367 15210 39311;39312 61678;61679;61680 61678 3 VVHIIQSR LSLDINKLPGEKLGRVVHIIQSREPSLKNS PGEKLGRVVHIIQSREPSLKNSNPDEIEID R V V S R E 0 1 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 0 2 0 0 8 0 950.56615 O60885;A0A024R7H8;Q58F21;A0A024R8H6;Q15059;B4DS09 O60885 633 640 BRD4;BRDT;BRD3 Bromodomain-containing protein 4;Bromodomain testis-specific protein;Bromodomain-containing protein 3 no no 3 0.0022068 73.208 1 0.66895 0.69474 NaN 1 Median 0.66895 0.69474 NaN 1 0 Median NaN NaN NaN 0 0 Median 20808000 13189000 7619600 20808000 13189000 7619600 0 0 0 14808 1399;249 15211 39313 61681 61681 1 VVHIMDFQR QGPRHMQKGRVETSRVVHIMDFQRGKNLRY RVETSRVVHIMDFQRGKNLRYQLLQLVEPF R V V Q R G 0 1 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 2 0 0 9 0 1143.5859 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991;H0Y8T4;Q5CZA7;B4DF66;B3KM87;B4DRS1;D6RBI2;D6RE02;D6RIA2;D6RAM9;D6RAY2 D6REM6 399 407 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 3 0.0086881 44.318 1 2.2355 2.5654 NaN 1 Median 2.2355 2.5654 NaN 1 0 Median NaN NaN NaN 0 0 Median 52055000 15976000 36079000 52055000 15976000 36079000 0 0 0 14809 542 15212 39314 61682 61682 400 1 VVIFQQEQENK NHSGELLATGDKGGRVVIFQQEQENKIQSH KGGRVVIFQQEQENKIQSHSRGEYNVYSTF R V V N K I 0 0 1 0 0 3 2 0 0 1 0 1 0 1 0 0 0 0 0 2 0 0 11 0 1360.6987 Q56VW8;A0A140VJT0;P63151;E5RIY1 Q56VW8 52 62 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 2 0.01294 47.603 1 1.9538 1.6608 NaN 1 Median NaN NaN NaN 0 0 Median 1.9538 1.6608 NaN 1 0 Median 1162300 324640 837630 0 0 0 1162300 324640 837630 14810 609 15213 39315 61683 61683 1 VVIIDEAHER LLKEIQKDFLLLRYKVVIIDEAHERSVYTD LLRYKVVIIDEAHERSVYTDILIGLLSRIV K V V E R S 1 1 0 1 0 0 2 0 1 2 0 0 0 0 0 0 0 0 0 2 0 0 10 0 1179.6248 Q8IY37;F5H3Y4 Q8IY37 368 377 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 3 0.053447 29.936 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9304500 0 9304500 9304500 0 9304500 0 0 0 14811 1897 15214 39316 61684 61684 1 VVILMELEVLK QIHRFIVNTLKDGRRVVILMELEVLKSAEA DGRRVVILMELEVLKSAEAVGVKIGNPVPY R V V L K S 0 0 0 0 0 0 2 0 0 1 3 1 1 0 0 0 0 0 0 3 0 0 11 0 1284.7727 P27694;I3L524;I3L2M5 P27694 93 103 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.00089958 64.297 2 1 1.6006 1.6036 10.559 2 Median 1.6006 1.6036 10.559 2 0 Median NaN NaN NaN 0 0 Median 11794000 4658800 7135300 10940000 3804800 7135300 854080 854080 0 14812 1525 15215 39317;39318;39319 61685;61686;61687 61686 1291 3 VVILNVDLLK YHRAGQEVESGQKKKVVILNVDLLKLEVHV GQKKKVVILNVDLLKLEVHVSLHQDLVNRK K V V L K L 0 0 1 1 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 3 0 0 10 0 1124.7169 Q14690;B4DH82 Q14690 894 903 PDCD11 Protein RRP5 homolog yes no 2 0.00051176 85.676 2 2 1.1896 1.206 10.584 4 Median 1.0926 1.206 5.9501 2 0 Median 1.4091 1.1411 16.433 2 0 Median 109410000 48406000 61003000 96638000 43277000 53361000 12772000 5129300 7642900 14813 1741 15216 39320;39321;39322;39323 61688;61689;61690;61691;61692;61693 61690 6 VVITCPQDFPHCSIPLR GTYLPSMPRSYKPQRVVITCPQDFPHCSIP ITCPQDFPHCSIPLRVGLPLLSPEFLLTGV R V V L R V 0 1 0 1 2 1 0 0 1 2 1 0 0 1 3 1 1 0 0 2 0 0 17 0 2038.0128 Q14676 Q14676 2038 2054 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 3.208E-07 83.54 2 2 0.65754 0.54445 9.0463 2 Median NaN NaN NaN 0 0 Median 0.65754 0.54445 9.0463 2 0 Median 40909000 35061000 5847400 24374000 24374000 0 16534000 10687000 5847400 14814 1738 15217 39324;39325;39326;39327 61694;61695;61696;61697;61698;61699 61697 6 VVIVDPETGK RERKTSSKSSVRKRRVVIVDPETGKEMSVY VRKRRVVIVDPETGKEMSVYEAYRKGLIDH R V V G K E 0 0 0 1 0 0 1 1 0 1 0 1 0 0 1 0 1 0 0 3 0 0 10 0 1055.5863 Q15149;D3DWL0;Q96IE3 Q15149 4278 4287 PLEC;PLEC1 Plectin yes no 2 8.1742E-06 106.6 1 2 2.3273 1.8487 3.5546 3 Median 1.7378 1.9577 NaN 1 0 Median 2.3381 1.8415 0.5504 2 0 Median 75924000 25630000 50294000 68925000 23548000 45377000 6998700 2082000 4916700 14815 1754 15218 39328;39329;39330 61700;61701;61702;61703 61700 4 VVIVDPETNK KQVQTSQKNTLRKRRVVIVDPETNKEMSVQ LRKRRVVIVDPETNKEMSVQEAYKKGLIDY R V V N K E 0 0 1 1 0 0 1 0 0 1 0 1 0 0 1 0 1 0 0 3 0 0 10 0 1112.6077 P15924;Q4LE79 P15924 2466 2475 DSP;DSP variant protein Desmoplakin yes no 2 0.036959 40.002 1 0.52399 0.43399 NaN 1 Median NaN NaN NaN 0 0 Median 0.52399 0.43399 NaN 1 0 Median 1711700 1179100 532530 0 0 0 1711700 1179100 532530 14816 1486 15219 39331 61704 61704 1 VVLEAPLITESALEVVR GLQEKPDQKDGIFTKVVLEAPLITESALEV LEAPLITESALEVVRKYCEDESRTYLGMST K V V V R K 2 1 0 0 0 0 3 0 0 1 3 0 0 0 1 1 1 0 0 4 0 0 17 0 1837.0561 A0A087WUE9;Q4LE61;B7Z6F7;A0A024R0R6;Q92797 A0A087WUE9 667 683 SYMPK;SYMPK variant protein Symplekin yes no 2 0.0038294 35.737 1 0.73756 0.76467 NaN 1 Median 0.73756 0.76467 NaN 1 0 Median NaN NaN NaN 0 0 Median 5773000 2982400 2790600 5773000 2982400 2790600 0 0 0 14817 56 15220 39332 61705 61705 1 VVLEHEEVR KTTNPSKYIRFIYNRVVLEHEEVRAGAVSA RFIYNRVVLEHEEVRAGAVSALAKFGAQNE R V V V R A 0 1 0 0 0 0 3 0 1 0 1 0 0 0 0 0 0 0 0 3 0 0 9 0 1108.5877 Q9Y678;B3KW21;Q8WUI6 Q9Y678 480 488 COPG1;COPG Coatomer subunit gamma-1 yes no 2 0.006942 66.621 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14818 2151 15221 39333 61706 61706 1 VVLIGGKPDR TIKLFQECCPHSTDRVVLIGGKPDRVVECI HSTDRVVLIGGKPDRVVECIKIILDLISES R V V D R V 0 1 0 1 0 0 0 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 10 1 1052.6342 B4DUQ1;A0A024R228;Q5EC54;P61978;B4DFF1;Q5T6W2 B4DUQ1 168 177 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2;3 0.0062582 66.621 4 1.5879 1.8935 4.8883 4 Median 1.5879 1.8935 4.8883 4 0 Median NaN NaN NaN 0 0 Median 327030000 124850000 202190000 327030000 124850000 202190000 0 0 0 14819 102 15222 39334;39335;39336;39337 61707;61708;61709;61710;61711;61712 61710 6 VVLIVGETGSGK FEKQEEIVKIIKENKVVLIVGETGSGKTTQ ENKVVLIVGETGSGKTTQIPQFLLDDCFKN K V V G K T 0 0 0 0 0 0 1 3 0 1 1 1 0 0 0 1 1 0 0 3 0 0 12 0 1157.6656 Q6ZMY0;Q9H6S0;D6RA70 Q6ZMY0 121 132 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 2 0.019966 51.445 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14820 1863 15223 39338 61713 61713 1 VVLLGAPNAGK LVHHPDMPENSRVLRVVLLGAPNAGKSTLS RVLRVVLLGAPNAGKSTLSNQLLGRKVFPV R V V G K S 2 0 1 0 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 2 0 0 11 0 1037.6233 O75616;J3QSB2;J3QRV9;J3QT61 O75616 116 126 ERAL1 GTPase Era, mitochondrial yes no 2 0.0037571 59.245 2 2 1.6896 1.6769 35.827 4 Linear 1.6066 1.6184 25.937 2 0 Median 1.0679 0.92118 1.4501 2 0 Median 31231000 12872000 18359000 28757000 11693000 17064000 2474000 1179000 1295000 14821 1410 15224 39339;39340;39341;39342 61714;61715;61716;61717;61718;61719;61720 61718 7 VVLLGEFLHPCEDDIVCK RGGFNKGQDQGPPERVVLLGEFLHPCEDDI LGEFLHPCEDDIVCKCTTDENKVPYFNAPV R V V C K C 0 0 0 2 2 0 2 1 1 1 3 1 0 1 1 0 0 0 0 3 0 0 18 0 2142.0489 A0A024RDJ3;Q9NY12 A0A024RDJ3 70 87 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 3 4.2167E-07 86.488 2 2 0.66736 0.63847 33.361 4 Median 0.75002 0.84111 1.7605 2 0 Median 0.58204 0.47318 5.1495 2 0 Median 195050000 112930000 82126000 145390000 81730000 63664000 49661000 31199000 18462000 14822 387 15225 39343;39344;39345;39346 61721;61722;61723;61724;61725;61726;61727;61728;61729 61721 9 VVLLHGPPGTGK FSDKNVNSNLITWNRVVLLHGPPGTGKTSL WNRVVLLHGPPGTGKTSLCKALAQKLTIRL R V V G K T 0 0 0 0 0 0 0 3 1 0 2 1 0 0 2 0 1 0 0 2 0 0 12 0 1173.687 Q15645;H0YAL2 Q15645 174 185 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2;3 0.00071247 66.92 2 1.886 1.9832 18.809 2 Median 1.886 1.9832 18.809 2 0 Median NaN NaN NaN 0 0 Median 62693000 17713000 44980000 62693000 17713000 44980000 0 0 0 14823 1763 15226 39347;39348 61730;61731;61732 61732 3 VVLLTGETSTDLK YMDWYEKFQDRLNKKVVLLTGETSTDLKLL KKVVLLTGETSTDLKLLGKGNIIISTPEKW K V V L K L 0 0 0 1 0 0 1 1 0 0 3 1 0 0 0 1 3 0 0 2 0 0 13 0 1374.7606 O75643;A4FU77 O75643 1405 1417 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 9.5254E-09 115.57 2 2 1.0367 1.1693 21.48 4 Linear 1.0328 1.1598 1.8324 2 0 Median 0.99606 0.80056 2.5278 2 0 Median 162880000 85589000 77295000 150160000 78901000 71261000 12722000 6687900 6034100 14824 1411 15227 39349;39350;39351;39352 61733;61734;61735;61736;61737;61738 61733 6 VVLPIEAPIR FLEPGDLRLLDVDNRVVLPIEAPIRMMITS DVDNRVVLPIEAPIRMMITSQDVLHSWAVP R V V I R M 1 1 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 0 2 0 0 10 0 1105.6859 A0A0E3JSF1;A0A0E3JG40;D3WYY8;Q14XT3;X2D546;X2D544;X2D537;X2D4V5;X2D4V3;X2D4U5;X2D4U2;X2D4K6;X2D4F2;X2D4E2;X2D4D6;X2D3Z8;X2D3Z7;X2D3Z6;K7WG81;H9E7F7;A0A059QM31;H9E7P8;A0A059RTG7;A0A059QNV4;E2DTL8;A0A1B1PEQ8;H9E7W2;G3CA49;K7WVJ5;H9E7T7;X5C6M5;X5BKA4;X2CK15;X2C841;W8DFH5;W8DBX9;W8D4U9;W8D1X2;V9K571;V9JPM6;V9JD22;V9J3S1;U5Z9R9;U5Z487;U3LSI8;U3L556;T1SWS8;T1Q632;S4STI1;R9Y478;R9Y412;Q9B2U8;Q9B138;Q8WCW3;Q8HNR6;Q8HNR1;Q85KS0;Q7YEH2;Q7YCE6;Q7Y6N0;Q7Y6M3;Q7Y626;Q6VJJ3;Q6VJD8;Q6VIG7;Q6RQ80;Q6RNN7;Q6RKW8;Q6R0V6;Q5XRW8;Q5SB08;Q5SAP1;Q5SA98;Q5S971;Q4GW12;Q4GVP5;Q4GQP0;Q4GHE1;Q4GCZ4;Q4GCG2;Q4GCC3;Q4F4V6;Q4EZD4;Q305H0;Q19MP7;Q15HH9;Q0Z7S0;Q0Z7K3;Q0Z7J0;Q0Z7F1;Q0Z7D8;Q09U41;Q06TE6;N0BMC4;L7XQ86;L7XMG0;L7NVC9;K9M370;K7X9X2;J7HPF9;J7FG21;I6UIH6;I6PZI4;I6PRP7;I6N6Q6;I3Q4M2;I3PYD8;I2E7Z7;H9T3W9;H9SA70;H9S868;H9S5Y2;H9S054;H9RV93;H9RKS9;H9RJL3;H9RF01;H9RD12;H9RAX1;H9RA87;H9QLC8;H9QH59;H9Q9T5;H9PWQ9;H9PMX8;H9PDV6;H9MK30;H9M675;H9LMC2;H9E7D1;G9LKX8;G9LHJ5;G9LG51;G9LB98;G8JF18;G8JE99;G5D8Q5;G5D8N2;G5D8K6;G5D8J3;G5D8C8;G5D863;G4W3U1;G4W3M6;F2WJ84;F2WI31;F2WGV2;F1CIN6;F1AZF2;F1AZ87;E9P659;E7E4E0;E7CNQ9;E7CM18;E5FWC0;E5EWR3;E5EWL4;E5EWG2;E5E1V1;E5E1A6;E5E079;E5DZN4;E2JFC4;E0AF97;D2IKF4;D1G421;C8YBL1;C8Y3Q5;C8Y3G4;C8XWJ6;C5H6M8;C5H6M7;C5H6M5;C5H6M4;C5H6M3;C5H6L3;C5H6K7;C5H6K6;C5H6K5;B5M7M0;B3GUF3;B3DE06;B2XP28;B2XL43;B2XIR3;B2XHT9;B2WRY8;B2CB37;B1W855;A7LFA2;A7LF11;A6ZHA9;A6ZFK3;A6ZF47;A6ZEU4;A6Z3M5;A1Z455;A0SA07;A0S3T1;A0S2P1;A0A1S6N0P5;A0A1S6M799;A0A1L7NY43;A0A1L1ZJP0;A0A1J0QNY7;A0A1J0QL53;A0A1J0PNZ2;A0A1I9S095;A0A1B1PEN9;A0A1B0W3A7;A0A1B0W1P0;A0A1B0W0T5;A0A1B0VYS2;A0A143G082;A0A143FZ56;A0A0R6NEC0;A0A0P0C1B5;A0A0N6YNR7;A0A0D4WSL8;A0A0D4WR75;A0A0D4WQL7;A0A0D3MLN1;A0A0B5E697;A0A097Q0T5;A0A097PWY7;A0A097PWR7;A0A068IXK4;A0A068BY99;A0A059SAH5;A0A059S8A4;A0A059S2S6;A0A059S242;A0A059RZV1;A0A059RX67;A0A059RVU8;A0A059RUP9;A0A059RTZ6;A0A059RSL1;A0A059RRR2;A0A059RRG1;A0A059RR09;A0A059RQT0;A0A059RQQ2;A0A059RQI1;A0A059RQ10;A0A059RPV8;A0A059RP05;A0A059RNV8;A0A059RNF8;A0A059RMK0;A0A059RLH3;A0A059RKX5;A0A059RKP1;A0A059RJF0;A0A059RIZ2;A0A059RIQ8;A0A059RI85;A0A059RI53;A0A059RHY7;A0A059RHR2;A0A059RFY4;A0A059R1T0;A0A059QVH0;A0A059QTW9;A0A059QS59;A0A059QQA7;A0A059QPY9;A0A059QPU3;A0A059QPT6;A0A059QPR4;A0A059QPE9;A0A059QPE7;A0A059QLX8;A0A059QI72;A0A023QZ25;A0A1B0W1E4;A0A059RUZ1;H9STE0;P00403;B2YKU2;V9J3C6;V9J128;A6YW54;A0A059RIK5 A0A0E3JSF1 142 151 cox2;COX2;COII;MT-CO2 Cytochrome c oxidase subunit 2 yes no 2 0.0007117 82.452 2 2 1.2939 1.271 9.65 4 Median 1.1771 1.3782 3.155 2 0 Median 1.4166 1.1729 3.0654 2 0 Median 601900000 280020000 321870000 571380000 267470000 303910000 30514000 12552000 17962000 14825 530 15228 39353;39354;39355;39356 61739;61740;61741;61742;61743;61744;61745;61746;61747 61743 9 VVLPTFILEPR WTLLKQVRPGMDLSKVVLPTFILEPRSFLD DLSKVVLPTFILEPRSFLDKLSDYYYHADF K V V P R S 0 1 0 0 0 0 1 0 0 1 2 0 0 1 2 0 1 0 0 2 0 0 11 0 1282.7649 F8VUA7;F8VQX7;Q641R2;A0A024RBB8;Q5HYM3;Q9BZF1 F8VUA7 398 408 OSBPL8;DKFZp686C0249 Oxysterol-binding protein;Oxysterol-binding protein-related protein 8 yes no 2 0.0024739 61.56 1 1.395 1.4048 NaN 1 Median 1.395 1.4048 NaN 1 0 Median NaN NaN NaN 0 0 Median 6528300 2671800 3856500 6528300 2671800 3856500 0 0 0 14826 333 15229 39357 61748 61748 1 VVLPTFILER MHLLSQVRLGMDLTKVVLPTFILERRSLLE MDLTKVVLPTFILERRSLLEMYADFFAHPD K V V E R R 0 1 0 0 0 0 1 0 0 1 2 0 0 1 1 0 1 0 0 2 0 0 10 0 1185.7121 B3KW33;B7Z4Q6;B1AKJ6;Q96SU4 B3KW33 176 185 OSBPL9 Oxysterol-binding protein;Oxysterol-binding protein-related protein 9 yes no 2 0.00057853 90.657 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10941000 0 10941000 10941000 0 10941000 0 0 0 14827 815 15230 39358;39359 61749;61750 61750 2 VVLPYLVPK FALDGLKQVMAIKSRVVLPYLVPKLTTPPV MAIKSRVVLPYLVPKLTTPPVNTRVLAFLS R V V P K L 0 0 0 0 0 0 0 0 0 0 2 1 0 0 2 0 0 0 1 3 0 0 9 0 1026.6478 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2075 2083 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.051865 46.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4845600 4845600 0 4845600 4845600 0 0 0 0 14828 1205 15231 39360 61751 61751 1 VVLSVSSGGQHTVLLVK AWSPVEMMGKQLENRVVLSVSSGGQHTVLL LSVSSGGQHTVLLVKDKEQS__________ R V V V K D 0 0 0 0 0 1 0 2 1 0 3 1 0 0 0 3 1 0 0 5 0 0 17 0 1722.004 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754 Q5T081 400 416 RCC1 Regulator of chromosome condensation yes no 2;3 2.0206E-05 60.307 3 1.0017 0.82986 3.5515 3 Median NaN NaN NaN 0 0 Median 1.0017 0.82986 3.5515 3 0 Median 98432000 51360000 47073000 0 0 0 98432000 51360000 47073000 14829 550 15232 39361;39362;39363 61752;61753;61754;61755 61752 4 VVLVLAGR ______________________________ KFMKPGKVVLVLAGRYSGRKAVIVKNIDDG K V V G R Y 1 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 3 0 0 8 0 825.54362 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ERY7 E4W6B6 10 17 RPL27 60S ribosomal protein L27 yes no 2 0.00096961 122.15 2 2 0.81595 0.82079 27.412 4 Median 0.89369 1.051 4.0516 2 0 Median 0.75906 0.65494 1.0109 2 0 Median 987390000 532450000 454950000 916130000 494260000 421860000 71267000 38184000 33084000 14830 93 15233 39364;39365;39366;39367 61756;61757;61758;61759;61760;61761;61762;61763;61764;61765;61766;61767;61768;61769 61759 14 VVMALGDYMGASCHACIGGTNVR LVLAPTRELAQQIQKVVMALGDYMGASCHA MGASCHACIGGTNVRAEVQKLQMEAPHIIV K V V V R A 3 1 1 1 2 0 0 4 1 1 1 0 2 0 0 1 1 0 1 3 0 0 23 0 2438.0963 A8K7F6;P60842;A8K088;J3KT12;Q59F68;J3QS69;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;B4E047;J3KS25 A8K7F6 119 141 EIF4A1 Eukaryotic initiation factor 4A-I yes no 3 1.4041E-09 76.015 2 4.2802 4.6171 NaN 1 Median 4.2802 4.6171 NaN 1 0 Median NaN NaN NaN 0 0 Median 42209000 6078100 36131000 42209000 6078100 36131000 0 0 0 14831 770 15234 39368;39369 61770;61771;61772 61772 603;604 3 VVNAVLTQIDQIK RNACRAGTEPSDAIRVVNAVLTQIDQIKRH IRVVNAVLTQIDQIKRHSNVVILTTSNITE R V V I K R 1 0 1 1 0 2 0 0 0 2 1 1 0 0 0 0 1 0 0 3 0 0 13 0 1439.8348 Q15645 Q15645 276 288 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 2.0943E-13 129 2 2 1.4295 1.3744 38.869 4 Median 1.7023 1.8896 0.47643 2 0 Median 1.1941 0.96588 5.3435 2 0 Median 128810000 50999000 77809000 109930000 41877000 68057000 18873000 9121600 9751900 14832 1763 15235 39370;39371;39372;39373 61773;61774;61775;61776;61777;61778;61779 61774 6 VVNDEEVVR STTKREEEHKLVKSKVVNDEEVVRVPLAFA KLVKSKVVNDEEVVRVPLAFAMVKLMQSLP K V V V R V 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 9 0 1057.5404 O75691 O75691 1812 1820 UTP20 Small subunit processome component 20 homolog yes yes 2 3.6578E-05 105.57 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34507000 0 34507000 34507000 0 34507000 0 0 0 14833 1412 15236 39374 61780 61780 1 VVNGPEILNK LARQIGKMLNAREPKVVNGPEILNKYVGES AREPKVVNGPEILNKYVGESEANIRKLFAD K V V N K Y 0 0 2 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 0 2 0 0 10 0 1081.6132 I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;B4DGR3 I3L0N3 279 288 NSF Vesicle-fusing ATPase yes no 2 0.013857 59.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9660400 0 9660400 9660400 0 9660400 0 0 0 14834 1096 15237 39375 61781 61781 1 VVNIVPVIAK SLRPLDIEFMKRLSKVVNIVPVIAKADTLT KRLSKVVNIVPVIAKADTLTLEERVHFKQR K V V A K A 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 4 0 0 10 0 1050.6801 A0A0S2Z5W9;A0A024R8Q0;A0A0S2Z5A5;A0A024R8V0;Q9UHD8;K7EK18;K7EL40 A0A0S2Z5W9 203 212 SEPT9 Septin-9 yes no 2 0.0011608 75.213 2 1.8466 1.9086 0.0786 2 Median 1.8466 1.9086 0.0786 2 0 Median NaN NaN NaN 0 0 Median 21295000 8211800 13084000 21295000 8211800 13084000 0 0 0 14835 254 15238 39376;39377 61782;61783;61784 61784 3 VVNLAVDK SCRKAGSIMREGRDRVVNLAVDKTGRILAC MREGRDRVVNLAVDKTGRILACHGTDSVLE R V V D K T 1 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 8 0 856.50182 Q5TDG3;Q9UNX4 Q5TDG3 282 289 WDR3 WD repeat-containing protein 3 yes no 2 0.011488 69.812 2 1 0.91667 1.0443 0.99108 3 Median 0.9057 1.0393 0.67856 2 0 Median 1.3587 1.055 NaN 1 0 Median 415470000 214470000 201000000 400810000 208320000 192490000 14653000 6141600 8511700 14836 1827 15239 39378;39379;39380 61785;61786;61787;61788;61789;61790 61789 6 VVNLGVLAQK RYAAPEQNNDPQQSKVVNLGVLAQKSDFCL PQQSKVVNLGVLAQKSDFCLKLEEGLVNNK K V V Q K S 1 0 1 0 0 1 0 1 0 0 2 1 0 0 0 0 0 0 0 3 0 0 10 0 1039.639 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 759 768 WDR36 WD repeat-containing protein 36 yes no 2 1.9464E-08 121.99 2 2 1.0972 1.0613 2.3799 4 Linear 0.93925 1.055 1.8628 2 0 Median 1.2716 1.0204 1.5464 2 0 Median 212930000 113100000 99829000 172730000 95768000 76964000 40198000 17333000 22865000 14837 486 15240 39381;39382;39383;39384 61791;61792;61793;61794;61795;61796;61797;61798 61791 8 VVNPLFEK VAPAPAVVKKQEAKKVVNPLFEKRPKNFGI KKQEAKKVVNPLFEKRPKNFGIGQDIQPKR K V V E K R 0 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 8 0 944.53312 P62424;Q5T8U3 P62424 27 34 RPL7A 60S ribosomal protein L7a yes no 2 0.0036078 96.253 2 2 0.86167 0.8507 27.397 4 Median 0.90559 1.0726 0.78129 2 0 Median 0.80967 0.66774 2.2507 2 0 Median 1283800000 674240000 609540000 1211900000 634880000 577030000 71875000 39366000 32509000 14838 1648 15241 39385;39386;39387;39388 61799;61800;61801;61802;61803;61804;61805;61806;61807;61808 61800 10 VVNQLLTEMDGLEAR LCPRRSDRETGASVRVVNQLLTEMDGLEAR VVNQLLTEMDGLEARQQVFIMAATNRPDII R V V A R Q 1 1 1 1 0 1 2 1 0 0 3 0 1 0 0 0 1 0 0 2 0 0 15 0 1686.8611 B4DLM8;O15381 B4DLM8 701 715 NVL Nuclear valosin-containing protein-like yes no 2 0.0059085 44.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14839 997 15242 39389 61809 61809 786 1 VVPEMTEILK IFQVADYGIVADLFKVVPEMTEILKKK___ ADLFKVVPEMTEILKKK_____________ K V V L K K 0 0 0 0 0 0 2 0 0 1 1 1 1 0 1 0 1 0 0 2 0 0 10 0 1157.6366 A0A0S2Z3L0;P13804;A0A0S2Z3M4;H0YK49;H0YL83 A0A0S2Z3L0 322 331 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.0047653 57.859 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8601200 0 8601200 8601200 0 8601200 0 0 0 14840 553 15243 39390 61810 61810 407 1 VVPIASLTPYQSK AGPSLSHTSGGTQSKVVPIASLTPYQSKWT SKVVPIASLTPYQSKWTICARVTNKSQIRT K V V S K W 1 0 0 0 0 1 0 0 0 1 1 1 0 0 2 2 1 0 1 2 0 0 13 0 1401.7868 P27694 P27694 184 196 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.00014193 82.417 2 1 0.4355 0.39424 52.027 2 Median 0.55882 0.56955 NaN 1 0 Median 0.33939 0.27289 NaN 1 0 Median 27304000 21515000 5788600 23061000 18364000 4697400 4242800 3151600 1091200 14841 1525 15244 39391;39392;39393 61811;61812;61813 61811 3 VVPINTPTAAVDQTLFPGK GFGLCAMANGEGRVKVVPINTPTAAVDQTL NTPTAAVDQTLFPGKVHSLSWALRGYEELL K V V G K V 2 0 1 1 0 1 0 1 0 1 1 1 0 1 3 0 3 0 0 3 0 0 19 0 1967.0728 A0A087X295;Q9NNW5;E9PDU5;B4E256;B4DK45;Q8NDH0 A0A087X295 449 467 WDR6;DKFZp434F1720 WD repeat-containing protein 6 yes no 2 4.1372E-05 49.929 1 1 0.70839 0.64497 39.018 2 Median 0.49018 0.48946 NaN 1 0 Median 1.0237 0.84989 NaN 1 0 Median 17365000 11554000 5811700 15082000 10524000 4558300 2283500 1030100 1253400 14842 451 15245 39394;39395 61814;61815 61814 2 VVPPLDEDGR YKPSFPKWARQDFSKVVPPLDEDGRSLLSQ QDFSKVVPPLDEDGRSLLSQMLHYDPNKRI K V V G R S 0 1 0 2 0 0 1 1 0 0 1 0 0 0 2 0 0 0 0 2 0 0 10 0 1095.556 A0A024RB10;A0A024RB77;G3V5T9;P24941;E7ESI2;B4DDL9 A0A024RB10 217 226 CDK2 Cyclin-dependent kinase 2 yes no 2 0.0032667 65.305 1 1.5818 1.7331 NaN 1 Median 1.5818 1.7331 NaN 1 0 Median NaN NaN NaN 0 0 Median 31323000 13264000 18059000 31323000 13264000 18059000 0 0 0 14843 318 15246 39396 61816 61816 1 VVPTLSTTDMK PSSPARSPSPAVPLRVVPTLSTTDMKTADK VPLRVVPTLSTTDMKTADKVELGDSDLKIM R V V M K T 0 0 0 1 0 0 0 0 0 0 1 1 1 0 1 1 3 0 0 2 0 0 11 0 1190.6217 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 235 245 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.017646 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14844 135 15247 39397 61817 61817 116 1 VVQGLFDNFLR YRVLHAAASAGEHEKVVQGLFDNFLRLRLR EHEKVVQGLFDNFLRLRLRDSSLGAVCVAL K V V L R L 0 1 1 1 0 1 0 1 0 0 2 0 0 2 0 0 0 0 0 2 0 0 11 0 1306.7034 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6 E7EXA6 648 658 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 2 0.041371 46.819 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2699700 0 2699700 2699700 0 2699700 0 0 0 14845 524 15248 39398 61818 61818 1 VVQLHEYSEELEK RVIVGGSSEYKINNKVVQLHEYSEELEKLG NKVVQLHEYSEELEKLGILIKARNFLVFQG K V V E K L 0 0 0 0 0 1 4 0 1 0 2 1 0 0 0 1 0 0 1 2 0 0 13 0 1601.7937 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709;Q68EN4;H0Y7K8;Q5H934;Q7Z4C6 Q14683 111 123 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 0.00014095 82.171 2 1.0238 1.0531 16.281 2 Median 1.0238 1.0531 16.281 2 0 Median NaN NaN NaN 0 0 Median 32093000 13253000 18840000 32093000 13253000 18840000 0 0 0 14846 1739 15249 39399;39400 61819;61820 61820 2 VVQMLGSLGGQINK LSSNEAISLEEIRIRVVQMLGSLGGQINKN RVVQMLGSLGGQINKNLLTVTSSDEMMKSY R V V N K N 0 0 1 0 0 2 0 3 0 1 2 1 1 0 0 1 0 0 0 2 0 0 14 0 1442.7915 P78527;B4DL41 P78527 855 868 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 1.3887E-06 104.22 5 2 1.2309 1.3055 5.8588 3 Median 1.2309 1.3055 5.8588 3 0 Median NaN NaN NaN 0 0 Median 56745000 29576000 27169000 52877000 25707000 27169000 3868300 3868300 0 14847 1665 15250 39401;39402;39403;39404;39405;39406;39407 61821;61822;61823;61824;61825;61826;61827 61825 1466 7 VVQNDAYTAPALPSSIR SSSKLSMSKALPLTKVVQNDAYTAPALPSS QNDAYTAPALPSSIRTKALTNMSRTLVNKE K V V I R T 3 1 1 1 0 1 0 0 0 1 1 0 0 0 2 2 1 0 1 2 0 0 17 0 1800.937 Q96DI9;F6VRR5;B4E0L0;Q9BY77;Q8WUT1;F8WCX5;Q659C6;B4DMM2 Q96DI9 226 242 POLDIP3;DKFZp434G0310 Polymerase delta-interacting protein 3 yes no 2 0.00017208 52.576 2 2 0.90068 0.8196 4.2266 3 Plateau 0.78407 0.81968 NaN 1 0 Median 0.91038 0.76189 0.28602 2 0 Median 26811000 13428000 13383000 16798000 7939600 8858600 10013000 5488100 4524700 14848 1063 15251 39408;39409;39410;39411 61828;61829;61830;61831;61832;61833;61834;61835 61829 8 VVQVSAGDSHTAALTDDGR EGSEMVPGKVELQEKVVQVSAGDSHTAALT SAGDSHTAALTDDGRVFLWGSFRDNNGVIG K V V G R V 3 1 0 3 0 1 0 2 1 0 1 0 0 0 0 2 2 0 0 3 0 0 19 0 1897.913 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 121 139 RCC1 Regulator of chromosome condensation yes no 2;3 1.1003E-64 158.65 4 3 0.88765 0.82973 23.814 7 Median 0.82615 0.93499 25.595 4 0 Median 0.91971 0.79456 5.7071 3 0 Plateau 436400000 237850000 198550000 356780000 195170000 161610000 79617000 42683000 36934000 14849 550 15252 39412;39413;39414;39415;39416;39417;39418 61836;61837;61838;61839;61840;61841;61842;61843;61844;61845;61846;61847;61848;61849;61850;61851;61852 61837 17 VVQVYR VQVVRGHYKGQQIGKVVQVYRKKYVIYIER HYKGQQIGKVVQVYRKKYVIYIERVQREKA K V V Y R K 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 6 0 762.43882 Q6IBH6;P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KTJ8;A0A024RBF6;J3KS10;H7C1F9;Q2PPJ7;E5RIT6;Q9UNX3 Q6IBH6 70 75 RPL26;hCG_26523;RALGAPA2;RPL26L1 60S ribosomal protein L26;Ral GTPase-activating protein subunit alpha-2;60S ribosomal protein L26-like 1 no no 2 0.012133 135.81 2 1 0.77355 0.91779 40.732 3 Plateau 0.77184 0.90838 1.4565 2 0 Median 0.52224 0.44871 NaN 1 0 Median 1265000000 694140000 570870000 1221300000 665670000 555620000 43734000 28476000 15258000 14850 1629;1214 15253 39419;39420;39421 61853;61854;61855 61854 3 VVSEDFLQDVSASTK KMNKKMEEVKEANIRVVSEDFLQDVSASTK VVSEDFLQDVSASTKSLQELFLAHILSPWG R V V T K S 1 0 0 2 0 1 1 0 0 0 1 1 0 1 0 3 1 0 0 3 0 0 15 0 1623.7992 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 453 467 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.9914E-10 110.64 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158440000 158440000 0 0 0 0 158440000 158440000 0 14851 139 15254 39422;39423 61856;61857 61857 2 VVSHSGSAGLSQVR PASSQTAPSSQAAARVVSHSGSAGLSQVRV RVVSHSGSAGLSQVRVVAQPSLPAVPQQSG R V V V R V 1 1 0 0 0 1 0 2 1 0 1 0 0 0 0 4 0 0 0 3 0 0 14 0 1382.7266 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 793 806 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2;3 3.8655E-05 80.905 2 1 0.83154 0.8285 27.275 3 Median 0.78897 0.78909 6.8915 2 0 Median 1.4504 1.256 NaN 1 0 Median 36613000 21557000 15056000 35617000 21263000 14353000 996380 294010 702370 14852 135 15255 39424;39425;39426 61858;61859;61860;61861 61858 4 VVSLEAELQDISSQESK QLEEKDMDIAGFTQKVVSLEAELQDISSQE SLEAELQDISSQESKDEASLAKVKKQLRDL K V V S K D 1 0 0 1 0 2 3 0 0 1 2 1 0 0 0 4 0 0 0 2 0 0 17 0 1860.9317 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4DZ32 A0A0D9SFK2 1515 1531 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.00039103 69.352 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4240700 0 4240700 4240700 0 4240700 0 0 0 14853 12 15256 39427;39428 61862;61863 61862 2 VVSLSEYR ISAIDLINIESFSSRVVSLSEYRQSLHTYL IESFSSRVVSLSEYRQSLHTYLRSKMSQVA R V V Y R Q 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 1 2 0 0 8 0 951.50255 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 271 278 NOP56 Nucleolar protein 56 yes no 2 0.0022722 108.09 3 2 0.80911 0.82269 7.2625 5 Median 0.76194 0.88903 7.5718 3 0 Median 0.93697 0.81189 0.32722 2 0 Median 1250000000 678000000 571970000 1147100000 624640000 522410000 102910000 53353000 49561000 14854 785 15257 39429;39430;39431;39432;39433 61864;61865;61866;61867;61868;61869;61870;61871;61872 61868 8 VVSQYHELVVQAR DNVVKKVQAAQSEAKVVSQYHELVVQARDD AKVVSQYHELVVQARDDFKRELDSITPEVL K V V A R D 1 1 0 0 0 2 1 0 1 0 1 0 0 0 0 1 0 0 1 4 0 0 13 0 1526.8205 B4DS66;H7C463;C9J406;Q16891;B9A067;B4DQY2;B4DKR1 Q16891 354 366 IMMT MICOS complex subunit MIC60 no no 2;3 6.358E-19 172.13 5 1 1.0797 1.211 11.695 4 Median 1.0402 1.1506 6.1649 3 0 Median 1.6899 1.4662 NaN 1 0 Median 234230000 106240000 127990000 229920000 104760000 125160000 4312500 1481900 2830600 14855 1774;1029;1128 15258 39434;39435;39436;39437;39438;39439 61873;61874;61875;61876;61877;61878;61879;61880;61881 61877 9 VVSSVLQFGNISFK HIMGFSHEEILSMLKVVSSVLQFGNISFKK KVVSSVLQFGNISFKKERNTDQASMPENTV K V V F K K 0 0 1 0 0 1 0 1 0 1 1 1 0 2 0 3 0 0 0 3 0 0 14 0 1523.8348 P35580 P35580 349 362 MYH10 Myosin-10 yes yes 2 0.048739 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14856 1544 15259 39440 61882 61882 1 VVSTHEQIVR SRQVRTKVVDVHDGKVVSTHEQIVRTKN__ VHDGKVVSTHEQIVRTKN____________ K V V V R T 0 1 0 0 0 1 1 0 1 1 0 0 0 0 0 1 1 0 0 3 0 0 10 0 1166.6408 CON__Q61782 CON__Q61782 81 90 yes yes 3 0.00067619 81.338 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23265000 23265000 0 23265000 23265000 0 0 0 0 + 14857 1176 15260 39441;39442 61883;61884 61884 2 VVSVQLGDGTR LLKLSPATPTSEGPKVVSVQLGDGTRLKGT EGPKVVSVQLGDGTRLKGTVLPVATIQNAS K V V T R L 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 1 1 0 0 3 0 0 11 0 1129.6091 Q8N1G0;F8WCX2 Q8N1G0 385 395 ZNF687 Zinc finger protein 687 yes no 2 5.7131E-08 116.3 2 1 0.81071 0.92393 NaN 1 Median 0.81071 0.92393 NaN 1 0 Median NaN NaN NaN 0 0 Median 77117000 54082000 23035000 77117000 54082000 23035000 0 0 0 14858 1905 15261 39443;39444;39445 61885;61886;61887;61888 61887 4 VVTATLWGEDADK EVAKRNIYLMDTSGKVVTATLWGEDADKFD GKVVTATLWGEDADKFDGSRQPVLAIKGAR K V V D K F 2 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 2 1 0 2 0 0 13 0 1403.6933 P27694;I3L4R8 P27694 355 367 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.0027984 66.262 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14859 1525 15262 39446 61889 61889 1 VVTDLISLIR HCTAFWLLVDLNRCRVVTDLISLIRQRFGF LNRCRVVTDLISLIRQRFGFSSGAFLGLYL R V V I R Q 0 1 0 1 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 2 0 0 10 0 1127.6914 P38432 P38432 37 46 COIL Coilin yes yes 2 7.6586E-12 141.48 2 2 0.68851 0.64661 23.31 4 Median 0.72672 0.77523 9.0267 2 0 Median 0.63248 0.53146 11.106 2 0 Median 67836000 39212000 28625000 55548000 31779000 23769000 12288000 7432300 4855700 14860 1552 15263 39447;39448;39449;39450 61890;61891;61892;61893;61894;61895;61896;61897 61891 8 VVTDTDETELAR IEEKRGVFNVQMEPKVVTDTDETELARQME EPKVVTDTDETELARQMERLERENAEVDGD K V V A R Q 1 1 0 2 0 0 2 0 0 0 1 0 0 0 0 0 3 0 0 2 0 0 12 0 1347.6518 Q53XC0;P05198 Q53XC0 277 288 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 1.4382E-06 97.597 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10858000 10858000 0 10858000 10858000 0 0 0 0 14861 1445 15264 39451;39452 61898;61899 61898 2 VVTGVANALAHR FGSEFSPELQASFQKVVTGVANALAHRYH_ FQKVVTGVANALAHRYH_____________ K V V H R Y 3 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 3 0 0 12 0 1206.6833 CON__Q3SX09 CON__Q3SX09 188 199 yes yes 2;3 3.0397E-28 146.88 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 257400000 257400000 0 247980000 247980000 0 9415800 9415800 0 + 14862 1172 15265 39453;39454;39455;39456;39457;39458 61900;61901;61902;61903;61904;61905 61903 6 VVTLQGQIIEQSGTMTGGGSK DQATRVAYQKDRRWRVVTLQGQIIEQSGTM QIIEQSGTMTGGGSKVMKGRMGSSLVIEIS R V V S K V 0 0 0 0 0 3 1 5 0 2 1 1 1 0 0 2 3 0 0 2 0 0 21 0 2090.0678 Q9NTJ3;E9PD53;B3KXX5 Q9NTJ3 737 757 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.2677E-59 174.59 2 4 1.626 1.4307 25.438 6 Median 1.0322 1.167 1.0027 2 0 Median 2.1804 1.7422 27.512 4 0 Median 343840000 169410000 174430000 267600000 140200000 127410000 76240000 29213000 47027000 14863 2070 15266;15267 39459;39460;39461;39462;39463;39464 61906;61907;61908;61909;61910;61911;61912;61913;61914;61915 61908 1908 10 VVTSEDQVQEGTK AYKQENEMLSSRDQRVVTSEDQVQEGTKVL QRVVTSEDQVQEGTKVLKLKTKMADKENMK R V V T K V 0 0 0 1 0 2 2 1 0 0 0 1 0 0 0 1 2 0 0 3 0 0 13 0 1418.6889 B2RMQ4;Q8WWK9;C9J7Y4 B2RMQ4 57 69 CKAP2 Cytoskeleton-associated protein 2 yes no 2 1.8172E-23 153.12 2 2 0.97022 0.89246 20.38 4 Median 0.74024 0.78446 9.6199 2 0 Median 1.3096 1.0601 15.715 2 0 Median 41715000 24458000 17257000 36112000 21963000 14149000 5603200 2495000 3108100 14864 895 15268 39465;39466;39467;39468 61916;61917;61918;61919;61920;61921;61922;61923;61924 61919 9 VVTTCADCNLR KSIASAYFSPLTGNRVVTTCADCNLRIFDS TGNRVVTTCADCNLRIFDSSCISSKIPLLT R V V L R I 1 1 1 1 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 2 0 0 11 0 1307.5962 A0A0C4DFX7;Q9H967 A0A0C4DFX7 447 457 WDR76 WD repeat-containing protein 76 yes no 2 0.0029093 70.056 4 1 1.5336 1.293 NaN 1 Median NaN NaN NaN 0 0 Median 1.5336 1.293 NaN 1 0 Median 12054000 10225000 1829600 9017100 9017100 0 3037100 1207500 1829600 14865 508 15269 39469;39470;39471;39472;39473 61925;61926;61927;61928;61929;61930;61931 61925 7 VVTVVTTK GGGGNEKKSGPTVTKVVTVVTTKKAVVDSD SGPTVTKVVTVVTTKKAVVDSDKKKGELME K V V T K K 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 4 0 0 8 0 845.52222 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 264 271 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.025358 62.107 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6934500 6934500 0 6934500 6934500 0 0 0 0 14866 511 15270 39474 61932 61932 1 VVVAENFDEIVNNENK LKSEPIPESNDGPVKVVVAENFDEIVNNEN VVAENFDEIVNNENKDVLIEFYAPWCGHCK K V V N K D 1 0 4 1 0 0 3 0 0 1 0 1 0 1 0 0 0 0 0 4 0 0 16 0 1831.8952 B4DDM1;B3KQT9;B3KQT2;V9HVY3;P30101;B4DJ98 B4DDM1 154 169 HEL-S-269;PDIA3 Protein disulfide-isomerase;Protein disulfide-isomerase A3 yes no 2 7.4775E-08 105.17 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14867 930 15271 39475;39476;39477;39478;39479 61933;61934;61935;61936;61937 61934 5 VVVDPVVTEQPSTSSAAK GKTESSSVVRTRSNRVVVDPVVTEQPSTSS DPVVTEQPSTSSAAKTFITKANASAIPGKT R V V A K T 2 0 0 1 0 1 1 0 0 0 0 1 0 0 2 3 2 0 0 5 0 0 18 0 1812.9469 Q8WWQ0;Q9NWP3 Q8WWQ0 1511 1528 PHIP PH-interacting protein yes no 2 2.6504E-16 114.56 2 2 1.0936 1.0831 20.06 4 Median 0.77899 0.89453 5.7307 2 0 Median 1.4785 1.2602 0.08633 2 0 Median 512940000 268890000 244050000 370760000 210790000 159970000 142180000 58097000 84087000 14868 1942 15272 39480;39481;39482;39483 61938;61939;61940;61941;61942;61943;61944;61945;61946;61947;61948;61949;61950;61951;61952;61953;61954;61955 61939 18 VVVEPPEGEEK IECTQAPAPASEDEKVVVEPPEGEEKVEKA EDEKVVVEPPEGEEKVEKAEVKERTEEPME K V V E K V 0 0 0 0 0 0 4 1 0 0 0 1 0 0 2 0 0 0 0 3 0 0 11 0 1210.6081 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1600 1610 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.00031294 101.11 3 2 1.1896 1.1269 35.492 4 Median 0.72974 0.837 0.97912 2 0 Median 1.9426 1.546 3.6417 2 0 Median 542730000 364990000 177740000 508570000 353610000 154960000 34155000 11377000 22778000 14869 515 15273 39484;39485;39486;39487;39488 61956;61957;61958;61959;61960;61961;61962;61963;61964 61957 8 VVVEPVGPVGFKPETFR LLYQHFWCLPVIKKRVVVEPVGPVGFKPET VEPVGPVGFKPETFRKFLALYLHGAA____ R V V F R K 0 1 0 0 0 0 2 2 0 0 0 1 0 2 3 0 1 0 0 5 0 0 17 1 1856.0196 Q9BZE1;Q6TGK8;A6NHR2 Q9BZE1 396 412 MRPL37 39S ribosomal protein L37, mitochondrial yes no 3 0.030871 31.42 2 1.1035 1.2257 NaN 1 Median 1.1035 1.2257 NaN 1 0 Median NaN NaN NaN 0 0 Median 10363000 5394200 4968300 10363000 5394200 4968300 0 0 0 14870 2020 15274 39489;39490 61965;61966 61965 2 VVVLGLLPR KAIVQLVNERQPQARVVVLGLLPRGQHPNP RQPQARVVVLGLLPRGQHPNPLREKNRQVN R V V P R G 0 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 3 0 0 9 0 964.64334 M0R389;A0A024R0L6;Q15102 M0R389 133 141 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes no 2 0.0054551 66.682 2 1.7788 1.7704 NaN 1 Median 1.7788 1.7704 NaN 1 0 Median NaN NaN NaN 0 0 Median 11064000 3374300 7690200 11064000 3374300 7690200 0 0 0 14871 52 15275 39491;39492 61967;61968;61969 61968 3 VVVLNCEPSK IPDPERVFYTGQVVKVVVLNCEPSKERMLL GQVVKVVVLNCEPSKERMLLSFKLSSDPEP K V V S K E 0 0 1 0 1 0 1 0 0 0 1 1 0 0 1 1 0 0 0 3 0 0 10 0 1143.5958 Q14690;B4DH82;B4DES7 Q14690 594 603 PDCD11 Protein RRP5 homolog yes no 2 0.00051176 85.676 1 1 1.0336 0.91354 3.6658 2 Median 0.95521 0.93753 NaN 1 0 Median 1.1185 0.89016 NaN 1 0 Median 25905000 13264000 12641000 22943000 11995000 10948000 2961800 1269500 1692300 14872 1741 15276 39493;39494 61970;61971;61972 61970 3 VVVPELSAGVASR SEIATERDLVAWSRRVVVPELSAGVASRQE RRVVVPELSAGVASRQEEWRTAKGEEEIKT R V V S R Q 2 1 0 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 4 0 0 13 0 1282.7245 Q8WWQ0 Q8WWQ0 723 735 PHIP PH-interacting protein yes yes 2 0.00011686 90.913 2 2 1.0538 1.0193 22.743 4 Median 0.73514 0.84647 0.66643 2 0 Median 1.5412 1.253 3.5744 2 0 Median 472130000 260040000 212090000 444950000 249010000 195940000 27181000 11031000 16150000 14873 1942 15277 39495;39496;39497;39498 61973;61974;61975;61976;61977;61978;61979;61980 61975 8 VVVPEVPLGIFR SQIATERDLQAWKRRVVVPEVPLGIFRKLE KRRVVVPEVPLGIFRKLEDFRLEKGEEERN R V V F R K 0 1 0 0 0 0 1 1 0 1 1 0 0 1 2 0 0 0 0 4 0 0 12 0 1323.7915 Q9NSI6;Q5R2U6;H0Y463;H7BZR9 Q9NSI6 741 752 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 9.0777E-05 96.331 2 0.79339 0.82375 2.1643 2 Median 0.79339 0.82375 2.1643 2 0 Median NaN NaN NaN 0 0 Median 42237000 22543000 19694000 42237000 22543000 19694000 0 0 0 14874 2068 15278 39499;39500 61981;61982;61983 61983 3 VVVQVLAEEPEAVLK EDAFRYMAQGKHIGKVVVQVLAEEPEAVLK VVVQVLAEEPEAVLKGAKPKLMSAISKTFC K V V L K G 2 0 0 0 0 1 3 0 0 0 2 1 0 0 1 0 0 0 0 5 0 0 15 0 1621.9291 A0A0U1RQF0;P49327 A0A0U1RQF0 1850 1864 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.6709E-10 120.96 2 1.6975 1.8243 0.22883 2 Median 1.6975 1.8243 0.22883 2 0 Median NaN NaN NaN 0 0 Median 87872000 32954000 54917000 87872000 32954000 54917000 0 0 0 14875 587 15279 39501;39502 61984;61985;61986;61987 61986 4 VVVSGLPPSGSWQDLK PRGRYGPPSRRSENRVVVSGLPPSGSWQDL VVSGLPPSGSWQDLKDHMREAGDVCYADVY R V V L K D 0 0 0 1 0 1 0 2 0 0 2 1 0 0 2 3 0 1 0 3 0 0 16 0 1667.8883 J3KTL2;Q07955;Q59FA2;A8K1L8;J3KSR8 J3KTL2 123 138 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 1.6908E-24 138.89 2 1 1.0615 1.2126 39.373 3 Median 1.0809 1.2351 2.6094 2 0 Median 0.77822 0.62498 NaN 1 0 Median 356730000 173870000 182860000 339090000 164890000 174200000 17643000 8982000 8661300 14876 1333 15280 39503;39504;39505 61988;61989;61990;61991;61992;61993;61994;61995 61988 8 VVVTDVTSNFLTVTIK PEEESWSPSLTNLEKVVVTDVTSNFLTVTI VVTDVTSNFLTVTIKESNTDQGFFKEKR__ K V V I K E 0 0 1 1 0 0 0 0 0 1 1 1 0 1 0 1 4 0 0 5 0 0 16 0 1734.9768 Q9HC52 Q9HC52 361 376 CBX8 Chromobox protein homolog 8 yes yes 2 8.1014E-07 97.551 1 2 1.075 0.95153 12.844 3 Median 1.075 1.1223 NaN 1 0 Median 1.1389 0.91062 6.2158 2 0 Median 11991000 5179200 6811300 3982400 1680800 2301600 8008100 3498400 4509700 14877 2052 15281 39506;39507;39508 61996;61997;61998 61998 3 VVVTVEQTEEELER YLEKEEKCLPPPSIRVVVTVEQTEEELERA RVVVTVEQTEEELERAASTIKEVAQAVLL_ R V V E R A 0 1 0 0 0 1 5 0 0 0 1 0 0 0 0 0 2 0 0 4 0 0 14 0 1658.8363 A0A024R277;O15269 A0A024R277 446 459 SPTLC1 Serine palmitoyltransferase 1 yes no 2 1.76E-15 128.28 2 0.82826 0.83034 NaN 1 Median 0.82826 0.83034 NaN 1 0 Median NaN NaN NaN 0 0 Median 15631000 4990200 10641000 15631000 4990200 10641000 0 0 0 14878 107 15282 39509;39510 61999;62000 62000 2 VVVVQAISALCQK KQISSFMSEISDEFKVVVVQAISALCQKYP FKVVVVQAISALCQKYPRKHAVLMNFLFTM K V V Q K Y 2 0 0 0 1 2 0 0 0 1 1 1 0 0 0 1 0 0 0 4 0 0 13 0 1413.8014 Q9Y678;B3KW21;Q8WUI6;Q9NUP3;B3KND4;Q9H9B7;A0A140VK12;Q9UBF2 Q9Y678 377 389 COPG1;COPG;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma;Coatomer subunit gamma-2 yes no 2 0.0020554 68.893 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14879 2151 15283 39511 62001 62001 1 VVWNSSTVQQK QRPLLPKETAPAVQRVVWNSSTVQQKEITQ AVQRVVWNSSTVQQKEITQSPSTSTITLVT R V V Q K E 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 2 1 1 0 3 0 0 11 0 1274.6619 A0A087WVZ6;H7C4X9 A0A087WVZ6 812 822 ZMYND8 no no 2 8.8417E-05 97.635 2 1 0.58079 0.5865 NaN 1 Median 0.58079 0.5865 NaN 1 0 Median NaN NaN NaN 0 0 Median 12083000 7495100 4587900 11086000 7495100 3591100 996800 0 996800 14880 422;1317 15284 39512;39513;39514 62002;62003;62004 62003 3 VVWVEESDK AVGRVGSTSENITQKVVWVEESDKRSFLLD ENITQKVVWVEESDKRSFLLDLLNATGKDS K V V D K R 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 1 0 1 0 3 0 0 9 0 1089.5342 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1 A0A0D9SFB3 419 427 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 0.0036023 71.379 1 1.6448 1.7561 NaN 1 Median 1.6448 1.7561 NaN 1 0 Median NaN NaN NaN 0 0 Median 36720000 17696000 19025000 36720000 17696000 19025000 0 0 0 14881 522 15285 39515 62005 62005 1 VVWVEESDKR AVGRVGSTSENITQKVVWVEESDKRSFLLD NITQKVVWVEESDKRSFLLDLLNATGKDSL K V V K R S 0 1 0 1 0 0 2 0 0 0 0 1 0 0 0 1 0 1 0 3 0 0 10 1 1245.6354 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1 A0A0D9SFB3 419 428 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 0.0001146 95.502 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4747600 0 4747600 4747600 0 4747600 0 0 0 14882 522 15286 39516;39517 62006;62007;62008 62007 3 VVYGGGAAEISCALAVSQEADK HDALCVIRNLIRDNRVVYGGGAAEISCALA AEISCALAVSQEADKCPTLEQYAMRAFADA R V V D K C 5 0 0 1 1 1 2 3 0 1 1 1 0 0 0 2 0 0 1 3 0 0 22 0 2194.0576 B4DE30;E7ENZ3;B4DYC8;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;Q96GI1;B4DX08;Q9HB74 B4DE30 343 364 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 2 0.0018834 32.702 1 2 1.5228 1.1968 13.612 2 Median NaN NaN NaN 0 0 Median 1.5228 1.1968 13.612 2 0 Median 11328000 3098800 8229400 3607200 0 3607200 7720900 3098800 4622100 14883 960 15287 39518;39519;39520 62009;62010;62011 62010 3 VVYIFGPPVK FLARLIPRMCHNVNRVVYIFGPPVKEPPTD HNVNRVVYIFGPPVKEPPTDVTPTFLTTGV R V V V K E 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 0 1 3 0 0 10 0 1117.6536 B4DUT7;A0A140VJK6;P49915;Q53F90 B4DUT7 509 518 GMPS GMP synthase [glutamine-hydrolyzing] yes no 2 0.001121 75.854 2 1 3.0576 3.1286 45.825 3 Plateau 3.0734 3.084 2.0304 2 0 Median 1.6179 1.395 NaN 1 0 Median 27631000 7819800 19811000 26530000 7443300 19087000 1101000 376500 724510 14884 604 15288 39521;39522;39523 62012;62013;62014 62012 3 VVYSAFLMATPR PLHRGGGQIIPTARRVVYSAFLMATPRLME ARRVVYSAFLMATPRLMEPYYFVEVQAPAD R V V P R L 2 1 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 0 1 2 0 0 12 0 1353.7115 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 766 777 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.00045296 63.624 1 2.3025 2.4458 NaN 1 Median 2.3025 2.4458 NaN 1 0 Median NaN NaN NaN 0 0 Median 42490000 29301000 13189000 42490000 29301000 13189000 0 0 0 14885 794 15289 39524 62015 62015 641 1 VWAEYALK RYIQPWESEFIDSQRVWAEYALKRQEAIAQ EFIDSQRVWAEYALKRQEAIAQNRRLTLED R V W L K R 2 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 1 0 0 8 0 978.51747 Q6P2Q9;B4DK16 Q6P2Q9 1385 1392 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.038292 58.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14886 1854 15290 39525 62016 62016 1 VWDIAYLQEIEDPEEPDPK EEKRLITGASDSELRVWDIAYLQEIEDPEE AYLQEIEDPEEPDPKKIKGSSPGIQDTLEA R V W P K K 1 0 0 3 0 1 4 0 0 2 1 1 0 0 3 0 0 1 1 1 0 0 19 0 2285.074 Q5TDG3;Q9UNX4 Q5TDG3 217 235 WDR3 WD repeat-containing protein 3 yes no 2 4.9101E-06 80.522 2 2 1.0606 0.97935 6.57 4 Median 0.97448 1.0253 0.32167 2 0 Median 1.136 0.91852 2.9067 2 0 Median 56619000 29804000 26815000 39821000 22065000 17757000 16798000 7739000 9058800 14887 1827 15291 39526;39527;39528;39529 62017;62018;62019;62020;62021;62022 62018 6 VWDIAYLQEIEDPEEPDPKK EEKRLITGASDSELRVWDIAYLQEIEDPEE YLQEIEDPEEPDPKKIKGSSPGIQDTLEAE R V W K K I 1 0 0 3 0 1 4 0 0 2 1 2 0 0 3 0 0 1 1 1 0 0 20 1 2413.1689 Q5TDG3;Q9UNX4 Q5TDG3 217 236 WDR3 WD repeat-containing protein 3 yes no 3 0.0043424 23.447 1 2 1.2308 1.0536 2.8598 3 Median 0.90156 1.0285 NaN 1 0 Median 1.2573 1.0711 2.3253 2 0 Median 27722000 12604000 15118000 12150000 5868800 6281100 15572000 6735100 8837300 14888 1827 15292 39530;39531;39532 62023;62024;62025;62026;62027 62023 5 VWDISTVSSVNEAFGR LPFIYALRGQKEGLRVWDISTVSSVNEAFG WDISTVSSVNEAFGRRERLVLGSARNSSIS R V W G R R 1 1 1 1 0 0 1 1 0 1 0 0 0 1 0 3 1 1 0 3 0 0 16 0 1765.8635 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 457 472 PWP1 Periodic tryptophan protein 1 homolog yes no 2 6.0274E-46 175.48 1 1.0982 0.91065 NaN 1 Median NaN NaN NaN 0 0 Median 1.0982 0.91065 NaN 1 0 Median 20457000 10061000 10395000 0 0 0 20457000 10061000 10395000 14889 339 15293 39533 62028;62029;62030 62030 3 VWDIVR TSTLLATGGCDGAVRVWDIVRHYGTHHFRG TGGCDGAVRVWDIVRHYGTHHFRGSPGVVH R V W V R H 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 2 0 0 6 0 786.43882 A0A087WYP7;Q12788;J3KNP2 Q12788 135 140 TBL3 Transducin beta-like protein 3 no no 2 0.053461 69.093 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13927000 0 13927000 13927000 0 13927000 0 0 0 14890 1698;436 15294 39534 62031 62031 1 VWDLAQQVVLSSYR SGTQAVSGSKDICIKVWDLAQQVVLSSYRA KVWDLAQQVVLSSYRAHAAQVTCVAASPHK K V W Y R A 1 1 0 1 0 2 0 0 0 0 2 0 0 0 0 2 0 1 1 3 0 0 14 0 1662.873 H0Y711;A0A024R0H7;Q9BQA1 H0Y711 88 101 WDR77 Methylosome protein 50 yes no 2 1.405E-06 102.62 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3546600 0 3546600 3546600 0 3546600 0 0 0 14891 47 15295 39535 62032 62032 1 VWDPDNPLTDR EGESDNRNQQKMEMKVWDPDNPLTDRQIDQ MEMKVWDPDNPLTDRQIDQFLVVARAVGTF K V W D R Q 0 1 1 3 0 0 0 0 0 0 1 0 0 0 2 0 1 1 0 1 0 0 11 0 1326.6204 A0A024R534;O94776 A0A024R534 178 188 MTA2 Metastasis-associated protein MTA2 yes no 2 0.00047879 75.294 2 2 1.0371 1.0042 38.452 4 Median 0.65183 0.72167 5.584 2 0 Median 1.7126 1.398 5.6477 2 0 Median 141730000 81413000 60316000 115520000 71123000 44396000 26210000 10290000 15920000 14892 168 15296 39536;39537;39538;39539 62033;62034;62035;62036;62037 62034 5 VWDPNSPLTDR EGESDEREQSKLEVKVWDPNSPLTDRQIDQ LEVKVWDPNSPLTDRQIDQFLVVARAVGTF K V W D R Q 0 1 1 2 0 0 0 0 0 0 1 0 0 0 2 1 1 1 0 1 0 0 11 0 1298.6255 E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8 E7EQY4 181 191 MTA3;tmp_locus_6 Metastasis-associated protein MTA3 yes no 2 0.0051146 65.305 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2007700 0 2007700 0 0 0 2007700 0 2007700 14893 1221 15297 39540 62038 62038 1 VWDVESGSLK DAEEICSASWDHTIRVWDVESGSLKSTLTG DHTIRVWDVESGSLKSTLTGNKVFNCISYS R V W L K S 0 0 0 1 0 0 1 1 0 0 1 1 0 0 0 2 0 1 0 2 0 0 10 0 1118.5608 Q53T99;Q9GZL7;B4DRY7 Q53T99 282 291 WDR12 Ribosome biogenesis protein WDR12 yes no 2 0.00013082 96.331 2 2 0.98521 0.91702 3.9796 4 Median 0.80087 0.89969 1.8684 2 0 Median 1.191 0.94875 3.9794 2 0 Median 189780000 107680000 82104000 164220000 95894000 68327000 25564000 11786000 13777000 14894 1792 15298 39541;39542;39543;39544 62039;62040;62041;62042;62043;62044;62045 62040 7 VWELGGCANK TKSDAPKEKGKKAPRVWELGGCANKEVLDY KKAPRVWELGGCANKEVLDYSTPTTNGTPE R V W N K E 1 0 1 0 1 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 10 0 1132.5335 Q6IAX9;P08240;A0A024R3M0 Q6IAX9 247 256 SRPR Signal recognition particle receptor subunit alpha yes no 2 0.0098473 54.157 1 1.1944 1.2331 NaN 1 Median 1.1944 1.2331 NaN 1 0 Median NaN NaN NaN 0 0 Median 14643000 7451500 7191900 14643000 7451500 7191900 0 0 0 14895 1455 15299 39545 62046;62047 62046 2 VWILTDDSDIYK EQPTLVTASKDGYFKVWILTDDSDIYKKAV YFKVWILTDDSDIYKKAVGWTCDFVGSYHK K V W Y K K 0 0 0 3 0 0 0 0 0 2 1 1 0 0 0 1 1 1 1 1 0 0 12 0 1466.7293 A8K330;Q8IWA0 A8K330 472 483 WDR75 WD repeat-containing protein 75 yes no 2 4.8821E-08 114.4 2 1 0.91772 0.93781 13.831 3 Median 0.89633 0.90945 4.343 2 0 Median 1.4644 1.1487 NaN 1 0 Median 62645000 33648000 28997000 58728000 31998000 26730000 3917200 1650300 2266900 14896 716 15300 39546;39547;39548 62048;62049;62050;62051;62052 62049 5 VWILTDDSDIYKK EQPTLVTASKDGYFKVWILTDDSDIYKKAV FKVWILTDDSDIYKKAVGWTCDFVGSYHKY K V W K K A 0 0 0 3 0 0 0 0 0 2 1 2 0 0 0 1 1 1 1 1 0 0 13 1 1594.8243 A8K330;Q8IWA0 A8K330 472 484 WDR75 WD repeat-containing protein 75 yes no 3 0.02303 42.809 2 2 1.2724 1.0885 0.89697 2 Median NaN NaN NaN 0 0 Median 1.2724 1.0885 0.89697 2 0 Median 25447000 18711000 6736500 13610000 13610000 0 11838000 5101100 6736500 14897 716 15301 39549;39550;39551;39552 62053;62054;62055;62056 62053 4 VWLDPNETNEIANANSR QKRLASSVLRCGKKKVWLDPNETNEIANAN LDPNETNEIANANSRQQIRKLIKDGLIIRK K V W S R Q 2 1 4 1 0 0 2 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 17 0 1941.9181 J3QR09;J3KTE4;Q53G49;P84098;J3QL15;Q8IWR8 J3QR09 19 35 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 2.8418E-34 156.24 2 2 0.75237 0.75769 12.003 4 Median 0.58364 0.68413 0.59438 2 0 Median 0.96889 0.84193 1.0616 2 0 Median 901020000 542250000 358770000 655660000 418190000 237470000 245360000 124060000 121300000 14898 1331 15302 39553;39554;39555;39556 62057;62058;62059;62060;62061;62062;62063;62064;62065;62066;62067;62068;62069;62070;62071;62072;62073 62063 17 VWLIDDILEK TDKGVSAAGQVVSLKVWLIDDILEKINSHL VVSLKVWLIDDILEKINSHLPSHIRIL___ K V W E K I 0 0 0 2 0 0 1 0 0 2 2 1 0 0 0 0 0 1 0 1 0 0 10 0 1242.686 F5GY32;A0A024RBS6;F5H1S9;G8JLB3;E5KMT6;E5KMT5;Q9Y606 F5GY32 132 141 PUS1 tRNA pseudouridine synthase;tRNA pseudouridine synthase A, mitochondrial yes no 2 0.0099205 57.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14899 346 15303 39557 62074 62074 1 VWNLANCK SNPIIVSCGWDKLVKVWNLANCKLKTNHIG GWDKLVKVWNLANCKLKTNHIGHTGYLNTV K V W C K L 1 0 2 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 8 0 1003.4909 E9KL35;P63244;J3KPE3;D6RAC2;H0Y8W2;D6RHH4;D6R9Z1;H0YAM7;D6R9L0;D6REE5;D6RFX4;B4DVD2;H0Y8R5;D6RBD0 E9KL35 176 183 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.00069603 128.75 2 1.3127 1.4443 4.6035 2 Median 1.3127 1.4443 4.6035 2 0 Median NaN NaN NaN 0 0 Median 98959000 40681000 58278000 98959000 40681000 58278000 0 0 0 14900 1227 15304 39558;39559 62075;62076;62077 62077 3 VWNVAENSYVETLFGHQDAVAALDALSR GTHQLYSTSHDRSVKVWNVAENSYVETLFG FGHQDAVAALDALSRECCVTAGGRDGTVRV K V W S R E 5 1 2 2 0 1 2 1 1 0 3 0 0 1 0 2 1 1 1 4 0 0 28 0 3074.5098 O43818 O43818 267 294 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 3 2.929E-17 74.287 2 0.64865 0.66004 8.6199 2 Median 0.64865 0.66004 8.6199 2 0 Median NaN NaN NaN 0 0 Median 40650000 22302000 18348000 40650000 22302000 18348000 0 0 0 14901 1389 15305 39560;39561 62078;62079;62080;62081 62081 4 VWQVTIGTR DGQTLFAGYTDNLVRVWQVTIGTR______ TDNLVRVWQVTIGTR_______________ R V W T R - 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 2 1 0 2 0 0 9 0 1058.5873 E9KL35;P63244;J3KPE3;D6RAC2;H0YAF8;D6RHH4;H0Y8R5;D6RF23;D6RHJ5 E9KL35 309 317 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.00029153 92.439 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63184000 63184000 0 63184000 63184000 0 0 0 0 14902 1227 15306 39562;39563 62082;62083 62083 2 VYAEVNSLR ______________________________ AGSRARVYAEVNSLRSREYWDYEAHVPSWG R V Y L R S 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 9 0 1049.5506 P19784;H3BNI9 P19784 12 20 CSNK2A2 Casein kinase II subunit alpha yes no 2 0.019235 51.346 1 1.6375 1.6112 NaN 1 Median 1.6375 1.6112 NaN 1 0 Median NaN NaN NaN 0 0 Median 13350000 5657400 7693000 13350000 5657400 7693000 0 0 0 14903 1501 15307 39564 62084 62084 1 VYAILTHGIFSGPAISR ICHAADKLLSAGATRVYAILTHGIFSGPAI AILTHGIFSGPAISRINNACFEAVVVTNTI R V Y S R I 2 1 0 0 0 0 0 2 1 3 1 0 0 1 1 2 1 0 1 1 0 0 17 0 1800.9887 Q53FW2;P60891;B1ALA9;B7ZB02;A0A140VK41;P11908;B2R860;H7C540 Q53FW2 244 260 PRPS1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2 no no 3 1.6148E-05 77.221 2 2 2.0392 2.0038 33.819 4 Median 2.3898 2.5973 0.74018 2 0 Median 1.7146 1.4564 9.1822 2 0 Median 81331000 23957000 57374000 71439000 20665000 50774000 9892000 3292100 6599900 14904 1626;616 15308 39565;39566;39567;39568 62085;62086;62087;62088;62089 62085 5 VYASSGDGEVYVWDVNSR NGRVAASTFSSDSKKVYASSGDGEVYVWDV SSGDGEVYVWDVNSRKCLNRFVDEGSLYGL K V Y S R K 1 1 1 2 0 0 1 2 0 0 0 0 0 0 0 3 0 1 2 4 0 0 18 0 2001.9068 B2RAX6;Q9Y5J1;J3KSR7;J3QR85;J3QRG0 B2RAX6 373 390 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 2.5133E-16 115.12 1 2 1.2491 1.0093 36.843 3 Median 0.51033 0.55837 NaN 1 0 Median 1.2945 1.0526 5.9447 2 0 Median 58733000 30298000 28435000 33879000 19392000 14486000 24854000 10906000 13948000 14905 876 15309 39569;39570;39571 62090;62091;62092;62093;62094;62095;62096;62097;62098 62091 9 VYATILNAGTNTDGFK GVVAVLLTKKSLARRVYATILNAGTNTDGF YATILNAGTNTDGFKEQGVTFPSGDIQEQL R V Y F K E 2 0 2 1 0 0 0 2 0 1 1 1 0 1 0 0 3 0 1 1 0 0 16 0 1683.8468 A0A0U1RQF0;P49327 A0A0U1RQF0 242 257 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 4.7541E-07 91.62 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6818500 0 6818500 6818500 0 6818500 0 0 0 14906 587 15310 39572;39573 62099;62100;62101 62100 3 VYDPASPQR GSQKLVTCTGYHQVRVYDPASPQRRPVLET GYHQVRVYDPASPQRRPVLETTYGEYPLTA R V Y Q R R 1 1 0 1 0 1 0 0 0 0 0 0 0 0 2 1 0 0 1 1 0 0 9 0 1031.5036 Q6RFH5;E9PS41 Q6RFH5 209 217 WDR74 WD repeat-containing protein 74 yes no 2 1.8757E-05 119.29 2 2 1.1619 1.1251 8.8745 3 Plateau 0.98904 1.1251 NaN 1 0 Median 1.2147 0.98828 6.7402 2 0 Median 181340000 112560000 68777000 153770000 100200000 53571000 27567000 12361000 15206000 14907 1859 15311 39574;39575;39576;39577 62102;62103;62104;62105;62106;62107;62108 62104 7 VYDQMPEPR VAGTLTNKMAPALRKVYDQMPEPRYVVSMG APALRKVYDQMPEPRYVVSMGSCANGGGYY K V Y P R Y 0 1 0 1 0 1 1 0 0 0 0 0 1 0 2 0 0 0 1 1 0 0 9 0 1133.5175 F5H5N1;B7Z1U1;A8K0V6;Q8NAS7;Q7LD69;F5GXJ1;O75251 F5H5N1 137 145 NDUFS7 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial yes no 2 0.032187 43.083 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14908 700 15312 39578 62109 62109 543 1 VYEGERPLTK IFSTASDNQPTVTIKVYEGERPLTKDNHLL TVTIKVYEGERPLTKDNHLLGTFDLTGIPP K V Y T K D 0 1 0 0 0 0 2 1 0 0 1 1 0 0 1 0 1 0 1 1 0 0 10 1 1190.6295 V9HWB4;P11021 V9HWB4 465 474 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.0084446 73.067 2 0.74298 0.85789 10.396 2 Median 0.74298 0.85789 10.396 2 0 Median NaN NaN NaN 0 0 Median 71082000 38602000 32480000 71082000 38602000 32480000 0 0 0 14909 1466 15313 39579;39580 62110;62111 62111 2 VYEIPGLEPITFAGK GVRSTRKSEPPPLDRVYEIPGLEPITFAGK VYEIPGLEPITFAGKMHFVPWLARPIFPPW R V Y G K M 1 0 0 0 0 0 2 2 0 2 1 1 0 1 2 0 1 0 1 1 0 0 15 0 1632.8763 Q9BZE1;S4R369 Q9BZE1 49 63 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 0.0042985 54.259 2 1.4023 1.4162 16.998 2 Median 1.4023 1.4162 16.998 2 0 Median NaN NaN NaN 0 0 Median 13199000 5624800 7574000 13199000 5624800 7574000 0 0 0 14910 2020 15314 39581;39582 62112;62113 62113 2 VYELLGLLGEVHPSEMINNAENLFR ELALKKKIPDTVLEKVYELLGLLGEVHPSE VHPSEMINNAENLFRAFLGELKTQMTSAVR K V Y F R A 1 1 3 0 0 0 4 2 1 1 5 0 1 1 1 1 0 0 1 2 0 0 25 0 2856.448 P78527;B4DL41 P78527 174 198 PRKDC DNA-dependent protein kinase catalytic subunit yes no 3 2.841E-10 60.747 1 0.61798 0.60862 NaN 1 Median 0.61798 0.60862 NaN 1 0 Median NaN NaN NaN 0 0 Median 13197000 8018800 5178600 13197000 8018800 5178600 0 0 0 14911 1665 15315 39583 62114 62114 1467 1 VYENYPTYDLTER SANLEEVTMKQICKKVYENYPTYDLTERKD KKVYENYPTYDLTERKDFIKTTVKELIS__ K V Y E R K 0 1 1 1 0 0 2 0 0 0 1 0 0 0 1 0 2 0 3 1 0 0 13 0 1661.7573 B4DNW3;H0Y993;Q6MZJ9;P35659;B4DFG0 P35659 350 362 DEK;DKFZp686A24118 Protein DEK no no 2 3.3179E-19 147.72 2 3 0.62283 0.69436 20.89 5 Median 0.61622 0.72682 0.62576 2 0 Median 0.79845 0.69436 25.331 3 0 Plateau 2003900000 1219300000 784650000 1496400000 935940000 560470000 507530000 283350000 224180000 14912 1546;1018 15316 39584;39585;39586;39587;39588 62115;62116;62117;62118;62119;62120;62121;62122;62123;62124;62125;62126;62127;62128;62129;62130;62131;62132 62129 18 VYENYPTYDLTERK SANLEEVTMKQICKKVYENYPTYDLTERKD KVYENYPTYDLTERKDFIKTTVKELIS___ K V Y R K D 0 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 2 0 3 1 0 0 14 1 1789.8523 B4DNW3;H0Y993;Q6MZJ9;P35659;B4DFG0 P35659 350 363 DEK;DKFZp686A24118 Protein DEK no no 3 0.013086 18.457 2 0.98975 0.83684 2.7063 2 Median NaN NaN NaN 0 0 Median 0.98975 0.83684 2.7063 2 0 Median 16688000 8074600 8612900 0 0 0 16688000 8074600 8612900 14913 1546;1018 15317 39589;39590 62133;62134;62135 62135 3 VYFFGSGQPEK GGMFLATGSTDHIIRVYFFGSGQPEKISEL HIIRVYFFGSGQPEKISELEFHTDKVDSIQ R V Y E K I 0 0 0 0 0 1 1 2 0 0 0 1 0 2 1 1 0 0 1 1 0 0 11 0 1257.603 Q8WWQ0 Q8WWQ0 347 357 PHIP PH-interacting protein yes yes 2 1.8777E-05 105.4 2 2 1.1103 1.0723 14.108 4 Median 0.83425 0.95136 0.46088 2 0 Median 1.4823 1.2143 1.1359 2 0 Median 380380000 201210000 179180000 319970000 178310000 141660000 60414000 22897000 37517000 14914 1942 15318 39591;39592;39593;39594 62136;62137;62138;62139;62140;62141;62142;62143;62144 62137 9 VYFLPITPHYVTQVIR PNIATVQTSQGLADKVYFLPITPHYVTQVI YFLPITPHYVTQVIRNERPDGVLLTFGGQT K V Y I R N 0 1 0 0 0 1 0 0 1 2 1 0 0 1 2 0 2 0 2 3 0 0 16 0 1945.0826 Q53SY7;F8VPD4;P27708 Q53SY7 376 391 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.041664 17.242 1 0.58668 0.50308 NaN 1 Median NaN NaN NaN 0 0 Median 0.58668 0.50308 NaN 1 0 Median 3337200 2122200 1215000 0 0 0 3337200 2122200 1215000 14915 1259 15319 39595 62145 62145 1 VYHLEEPK EGGHLFLYYTVENSRVYHLEEPKCLEIYPQ YTVENSRVYHLEEPKCLEIYPQQADAMELL R V Y P K C 0 0 0 0 0 0 2 0 1 0 1 1 0 0 1 0 0 0 1 1 0 0 8 0 1013.5182 A0A0A8K8C0;Q9H6W3 A0A0A8K8C0 576 583 URLC2;NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 yes no 2 0.034178 60.895 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14916 497 15320 39596 62146 62146 1 VYIVHGVQEDLR ______________________________ AEKVYIVHGVQEDLRVDGRGREDYRCVEVE K V Y L R V 0 1 0 1 0 1 1 1 1 1 1 0 0 0 0 0 0 0 1 3 0 0 12 0 1426.7569 B2RDZ9;A0A024R2P7;Q15024;B4DIU0 B2RDZ9 12 23 EXOSC7 Exosome complex component RRP42 yes no 3 0.025354 28.903 1 2 0.81035 0.69282 14.103 3 Median 0.65701 0.6859 NaN 1 0 Median 0.9213 0.7808 16.907 2 0 Median 33150000 18102000 15048000 22462000 13114000 9347800 10688000 4987700 5700300 14917 120 15321 39597;39598;39599 62147;62148;62149;62150 62148 4 VYLILEYAPLGTVYR PNILRLYGYFHDATRVYLILEYAPLGTVYR VYLILEYAPLGTVYRELQKLSKFDEQRTAT R V Y Y R E 1 1 0 0 0 0 1 1 0 1 3 0 0 0 1 0 1 0 3 2 0 0 15 0 1768.9764 O14965;B4DX16;A3KFJ0;B2R6Z3;Q5QPD4 O14965 206 220 AURKA Aurora kinase A yes no 2 6.8204E-06 91.855 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16337000 0 16337000 16337000 0 16337000 0 0 0 14918 1369 15322 39600;39601 62151;62152 62151 2 VYLQNEYK LGAVYDVSHYNALLKVYLQNEYKFSPTDFL HYNALLKVYLQNEYKFSPTDFLAKMEEANI K V Y Y K F 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 1055.5288 E5KNY5;P42704;B4DSR0;A0A0C4DG06;B8ZZ38;C9JCA9 E5KNY5 171 178 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.012693 67.032 1 1 1.9125 1.9786 NaN 1 Median 1.9125 1.9786 NaN 1 0 Median NaN NaN NaN 0 0 Median 34308000 11083000 23225000 33072000 11083000 21989000 1235500 0 1235500 14919 1207 15323 39602;39603 62153;62154 62153 2 VYNVTQHAVGIVVNK QKGMPHKCYHGKTGRVYNVTQHAVGIVVNK VYNVTQHAVGIVVNKQVKGKILAKRINVRI R V Y N K Q 1 0 2 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 1 5 0 0 15 0 1639.9046 Q6IAX2;P46778;Q59GK9;G3V1B3;M0R181 Q6IAX2 64 78 RPL21 60S ribosomal protein L21 yes no 2;3 3.1544E-47 189.33 5 3 0.9134 1.056 24.928 7 Median 0.93324 1.0979 3.2057 4 0 Median 0.82205 0.67095 5.1594 3 0 Median 1793000000 926330000 866680000 1577000000 807600000 769370000 216040000 118730000 97311000 14920 1571 15324 39604;39605;39606;39607;39608;39609;39610;39611 62155;62156;62157;62158;62159;62160;62161;62162;62163;62164;62165;62166;62167;62168;62169;62170;62171;62172 62159 18 VYNYNHLMPTR KKKIAKRSKIKSFVKVYNYNHLMPTRYSVD SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD K V Y T R Y 0 1 2 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 2 1 0 0 11 0 1406.6765 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7;K7EQQ9 E4W6B6 74 84 RPL27 60S ribosomal protein L27 yes no 2;3 6.5468E-11 135.86 4 3 1.0176 1.1613 51.242 7 Median 1.1375 1.3135 10.327 4 0 Median 0.86552 0.72122 44.089 3 0 Median 814120000 375310000 438810000 777280000 351730000 425550000 36844000 23577000 13267000 14921 93 15325;15326 39612;39613;39614;39615;39616;39617;39618 62173;62174;62175;62176;62177;62178;62179;62180;62181;62182;62183;62184 62173 85 12 VYPQAVYFPIR SEGKLLLNLISQVGRVYPQAVYFPIRTLYL QVGRVYPQAVYFPIRTLYLTLKIEQRERYK R V Y I R T 1 1 0 0 0 1 0 0 0 1 0 0 0 1 2 0 0 0 2 2 0 0 11 0 1351.7289 F2Z2U4;Q59FH1;H0Y4W2;Q9Y4A5 F2Z2U4 3231 3241 TRRAP Transformation/transcription domain-associated protein yes no 2 0.031577 48.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14922 1253 15327 39619 62185 62185 1 VYQWDDPDPR AFEVSENGNLVVSGKVYQWDDPDPRLFDHP VVSGKVYQWDDPDPRLFDHPESPTPNPTEP K V Y P R L 0 1 0 3 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 10 0 1289.5677 A0A0U1RQF0;P49327 A0A0U1RQF0 958 967 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0026988 67.897 2 1.3606 1.3901 6.8223 2 Median 1.3606 1.3901 6.8223 2 0 Median NaN NaN NaN 0 0 Median 15912000 6736800 9174800 15912000 6736800 9174800 0 0 0 14923 587 15328 39620;39621 62186;62187;62188;62189;62190 62189 5 VYSLFLDESR RKRKGTEVQVDDIKRVYSLFLDESRSTQYM DDIKRVYSLFLDESRSTQYMKEYQDAFLFN R V Y S R S 0 1 0 1 0 0 1 0 0 0 2 0 0 1 0 2 0 0 1 1 0 0 10 0 1227.6136 Q9Y230;B3KNL2 Q9Y230 429 438 RUVBL2 RuvB-like 2 yes no 2 1.2241E-05 103.55 1 0.75694 0.80911 NaN 1 Median 0.75694 0.80911 NaN 1 0 Median NaN NaN NaN 0 0 Median 24877000 14718000 10159000 24877000 14718000 10159000 0 0 0 14924 2120 15329 39622 62191;62192 62192 2 VYSTALSSFLTK GPQAASCLDLNLVTRVYSTALSSFLTKRNS VTRVYSTALSSFLTKRNSPLTVPMFLSLFS R V Y T K R 1 0 0 0 0 0 0 0 0 0 2 1 0 1 0 3 2 0 1 1 0 0 12 0 1315.7024 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 977 988 MYBBP1A Myb-binding protein 1A yes no 2 1.3822E-12 128.81 2 2 0.90871 0.869 14.466 4 Median 0.87395 0.9863 0.56751 2 0 Median 0.9481 0.76775 0.17895 2 0 Median 207950000 108170000 99784000 155460000 80957000 74501000 52492000 27210000 25283000 14925 1997 15330 39623;39624;39625;39626 62193;62194;62195;62196;62197;62198;62199;62200;62201 62197 9 VYSTTSYK SGQRLLSGSLDRKVKVYSTTSYKVVHSFDY SLDRKVKVYSTTSYKVVHSFDYAASILSLA K V Y Y K V 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 2 0 2 1 0 0 8 0 947.46001 Q8TED0;H0Y8P4 Q8TED0 274 281 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.0023621 100.45 1 1.0413 1.022 NaN 1 Median 1.0413 1.022 NaN 1 0 Median NaN NaN NaN 0 0 Median 22946000 9842100 13104000 22946000 9842100 13104000 0 0 0 14926 1936 15331 39627 62202 62202 1 VYTLSVSGDR PRTPCNAGTFSQPEKVYTLSVSGDRLIVGT SQPEKVYTLSVSGDRLIVGTAGRRVLVWDL K V Y D R L 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 2 1 0 1 2 0 0 10 0 1095.556 J3QT28;A0A140VJF3;O43684;B4DDM6 J3QT28 140 149 BUB3 Mitotic checkpoint protein BUB3 yes no 2 7.8785E-05 98.033 2 2 1.0191 1.1189 11.743 4 Linear 0.98226 1.1089 4.9057 2 0 Median 1.0814 0.91121 2.021 2 0 Median 125040000 62837000 62200000 113270000 57076000 56193000 11767000 5761300 6006200 14927 600 15332 39628;39629;39630;39631 62203;62204;62205;62206;62207;62208;62209 62206 7 VYVGNLGNNGNK ______________________________ DCKVYVGNLGNNGNKTELERAFGYYGPLRS K V Y N K T 0 0 4 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 1 2 0 0 12 0 1247.6258 B2R6F3;P84103;A0A087X2D0 B2R6F3 12 23 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 2 8.6309E-19 149.65 2 2 1.0144 0.97171 53.1 4 Median 1.3273 1.4882 2.8754 2 0 Median 0.74113 0.59768 11.323 2 0 Median 180290000 76473000 103820000 163000000 66484000 96516000 17294000 9989500 7304900 14928 841 15333 39632;39633;39634;39635 62210;62211;62212;62213;62214;62215;62216;62217 62210 8 VYVGNLGTGAGK ______________________________ ETKVYVGNLGTGAGKGELERAFSYYGPLRT K V Y G K G 1 0 1 0 0 0 0 4 0 0 1 1 0 0 0 0 1 0 1 2 0 0 12 0 1134.6033 Q16629;A0A0B4J1Z1;B4DEK2;C9JAB2;Q8NB80 Q16629 13 24 SRSF7 Serine/arginine-rich splicing factor 7 no no 2 2.8697E-28 147.4 2 2 0.91456 0.73948 2.7116 2 Median NaN NaN NaN 0 0 Median 0.91456 0.73948 2.7116 2 0 Median 445420000 422800000 22617000 398570000 398570000 0 46845000 24228000 22617000 14929 1772;1918 15334 39636;39637;39638;39639 62218;62219;62220;62221;62222;62223 62218 6 VYVIGSFVDK TADSPNVMTTFRHDKVYVIGSFVDKSMQPG FRHDKVYVIGSFVDKSMQPGTSLAKAKRLN K V Y D K S 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 0 0 1 3 0 0 10 0 1125.607 Q7L0Y3 Q7L0Y3 306 315 TRMT10C Mitochondrial ribonuclease P protein 1 yes yes 2 0.00045959 72.643 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14930 1871 15335 39640;39641 62224;62225 62225 2 VYWEVEVER CEPGVLGSKGFTWGKVYWEVEVEREGWSED GFTWGKVYWEVEVEREGWSEDEEEGDEEEE K V Y E R E 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 1 1 3 0 0 9 0 1207.5873 A0A024RCP3;Q12899 A0A024RCP3 368 376 TRIM26 Tripartite motif-containing protein 26 yes no 2 0.008522 68.016 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12408000 12408000 0 12408000 12408000 0 0 0 0 14931 365 15336 39642;39643 62226;62227 62226 2 VYWSTTDAR DCEDKLFPIGYQCSRVYWSTTDARKRCVYT GYQCSRVYWSTTDARKRCVYTCKIVECRPP R V Y A R K 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2 1 1 1 0 0 9 0 1097.5142 Q03164 Q03164 2054 2062 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.049868 38.086 1 2.0244 1.7534 NaN 1 Median NaN NaN NaN 0 0 Median 2.0244 1.7534 NaN 1 0 Median 1953700 583220 1370500 0 0 0 1953700 583220 1370500 14932 1680 15337 39644 62228 62228 1 VYYEHLEK ISSHAHEMENKQFWKVYYEHLEKAATHAEK ENKQFWKVYYEHLEKAATHAEKELQNDMTD K V Y E K A 0 0 0 0 0 0 2 0 1 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 1079.5288 O75691 O75691 758 765 UTP20 Small subunit processome component 20 homolog yes yes 3 0.040561 28.495 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8454700 8454700 0 8454700 8454700 0 0 0 0 14933 1412 15338 39645 62229 62229 1 WAGGGFLSTVGDLLK KKRLVNTPYVDNSYKWAGGGFLSTVGDLLK WAGGGFLSTVGDLLKFGNAMLYGYQVGLFK K W A L K F 1 0 0 1 0 0 0 4 0 0 3 1 0 1 0 1 1 1 0 1 0 0 15 0 1519.8035 P83111 P83111 395 409 LACTB Serine beta-lactamase-like protein LACTB, mitochondrial yes yes 2 0.050916 46.592 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2263600 2263600 0 2263600 2263600 0 0 0 0 14934 1671 15339 39646 62230 62230 1 WAIELSGPGGGSR TAQGGLVANRGRRFKWAIELSGPGGGSRGR FKWAIELSGPGGGSRGRSDRGSGQGDSLYP K W A S R G 1 1 0 0 0 0 1 4 0 1 1 0 0 0 1 2 0 1 0 0 0 0 13 0 1285.6415 S4R329;H0YK61;H0YNK0;H0YNK8;A0A0S2Z598;A0A024R9N3;Q5J8M3;H0YMH5 S4R329 17 29 EMC4;TMEM85 ER membrane protein complex subunit 4 yes no 2 0.00028037 66.595 1 0.64679 0.65395 NaN 1 Median 0.64679 0.65395 NaN 1 0 Median NaN NaN NaN 0 0 Median 9731400 4779900 4951600 9731400 4779900 4951600 0 0 0 14935 283 15340 39647 62231 62231 1 WAQPDTAPLPVPANIR SQCTSSSQLDETSHRWAQPDTAPLPVPANI AQPDTAPLPVPANIRFSIWISFFEIYNELL R W A I R F 3 1 1 1 0 1 0 0 0 1 1 0 0 0 4 0 1 1 0 1 0 0 16 0 1744.9261 O95235 O95235 283 298 KIF20A Kinesin-like protein KIF20A yes yes 2 5.0078E-12 115.29 2 2 0.87693 0.84014 25.854 4 Median 0.64205 0.67435 4.2683 2 0 Median 1.22 1.0504 4.773 2 0 Median 115240000 60374000 54865000 53218000 33198000 20021000 62020000 27176000 34844000 14936 1421 15341 39648;39649;39650;39651 62232;62233;62234;62235;62236;62237;62238;62239;62240;62241 62239 10 WCEYGLTFTEK TDTGKVTGTLETKYKWCEYGLTFTEKWNTD TKYKWCEYGLTFTEKWNTDNTLGTEIAIED K W C E K W 0 0 0 0 1 0 2 1 0 0 1 1 0 1 0 0 2 1 1 0 0 0 11 0 1432.6333 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;B4DKM5;Q5JSD2;Q5JSD1;A2A3S1 A0A0A0MR02 75 85 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.00038057 83 2 2.0235 2.1742 0.13774 2 Median 2.0235 2.1742 0.13774 2 0 Median NaN NaN NaN 0 0 Median 81421000 28108000 53313000 81421000 28108000 53313000 0 0 0 14937 28 15342 39652;39653 62242;62243;62244;62245 62245 4 WDAWNALGSLPK NMPKPGVFDLINKAKWDAWNALGSLPKEAA KAKWDAWNALGSLPKEAARQNYVDLVSSLS K W D P K E 2 0 1 1 0 0 0 1 0 0 2 1 0 0 1 1 0 2 0 0 0 0 12 0 1356.6826 F8WAW4;Q9NYD2;B4DLL3;F1LLU7;C9JB63;Q59E94;Q6IBN4;Q53HG3;Q53GC8;A0A0C4DGA2;A0A024QZU5;O75521;F8W6J1 F8WAW4 63 74 ECI2;HCA64;PECI Enoyl-CoA delta isomerase 2, mitochondrial yes no 2 0.0068724 61.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14938 29 15343 39654 62246 62246 1 WDMSAENAR SRMHVLLGMLDACIKWDMSAENARCKVCRK LDACIKWDMSAENARCKVCRKKGEDDKLIL K W D A R C 2 1 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 9 0 1078.4502 Q9UIG0 Q9UIG0 1178 1186 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0031546 66.621 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11138000 0 11138000 11138000 0 11138000 0 0 0 14939 2103 15344 39655 62247 62247 1934 1 WDNLIYYALGGHK VGSKDMSTWVFGAERWDNLIYYALGGHKDA ERWDNLIYYALGGHKDAIVACFFESNSLDL R W D H K D 1 0 1 1 0 0 0 2 1 1 2 1 0 0 0 0 0 1 2 0 0 0 13 0 1548.7725 Q15269;A0A0B4J2E5 Q15269 176 188 PWP2 Periodic tryptophan protein 2 homolog yes no 3 0.0031249 33.685 2 2 0.99091 0.9171 6.253 4 Median 0.85218 0.87005 3.1911 2 0 Median 1.187 0.96197 2.4972 2 0 Median 48915000 22463000 26452000 30323000 14220000 16103000 18592000 8242700 10349000 14940 1756 15345 39656;39657;39658;39659 62248;62249;62250;62251;62252;62253;62254;62255;62256 62256 9 WDVSTTK GFLEAQQAFQSVGTKWDVSTTKARVAPEKK AFQSVGTKWDVSTTKARVAPEKKQDVGKFV K W D T K A 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 2 1 0 1 0 0 7 0 835.40758 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5;V9GZ76 P07814 167 173 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.032834 66.799 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16712000 0 16712000 16712000 0 16712000 0 0 0 14941 1454 15346 39660 62257 62257 1 WEGLVYAPPGK VIGANKNQEEEKSGKWEGLVYAPPGKEKQR KSGKWEGLVYAPPGKEKQRKTEELEEESFP K W E G K E 1 0 0 0 0 0 1 2 0 0 1 1 0 0 2 0 0 1 1 1 0 0 11 0 1215.6288 Q9Y2W1 Q9Y2W1 471 481 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.0078014 51.949 1 0.95494 0.9873 NaN 1 Median 0.95494 0.9873 NaN 1 0 Median NaN NaN NaN 0 0 Median 17190000 7894600 9295800 17190000 7894600 9295800 0 0 0 14942 2128 15347 39661 62258;62259 62258 2 WEGNYLFPR KFVQLEGAHPLEKSKWEGNYLFPRELFKLV PLEKSKWEGNYLFPRELFKLVVGGLLSPEE K W E P R E 0 1 1 0 0 0 1 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 9 0 1180.5665 Q9BVI4;F5H303 Q9BVI4 139 147 NOC4L Nucleolar complex protein 4 homolog yes no 2 0.0007141 100.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14943 2007 15348 39662 62260 62260 1 WELLQQMNVGTRPINLEPIFQGYIDSLKR KVRFLEQQNQVLQTKWELLQQMNVGTRPIN NLEPIFQGYIDSLKRYLDGLTAERTSQNSE K W E K R Y 0 2 2 1 0 3 2 2 0 3 4 1 1 1 2 1 1 1 1 1 0 0 29 2 3457.818 CON__P35908;P35908 CON__P35908 216 244 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 4 5.357E-12 65.581 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8304600 8304600 0 8304600 8304600 0 0 0 0 + 14944 1166 15349 39663 62261 62261 889 1 WELLQQVDTSTR KVRFLEQQNQVLQTKWELLQQVDTSTRTHN QTKWELLQQVDTSTRTHNLEPYFESFINNL K W E T R T 0 1 0 1 0 2 1 0 0 0 2 0 0 0 0 1 2 1 0 1 0 0 12 0 1474.7416 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 212 223 KRT1 Keratin, type II cytoskeletal 1 no no 2 4.3358E-05 96.015 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13170000 13170000 0 13170000 13170000 0 0 0 0 + 14945 1308;1309 15350 39664;39665 62262;62263 62263 2 WENIATILEAK QKLLDAESEDRPKQRWENIATILEAKCALK PKQRWENIATILEAKCALKYLIGELVSSKI R W E A K C 2 0 1 0 0 0 2 0 0 2 1 1 0 0 0 0 1 1 0 0 0 0 11 0 1286.6871 Q59HG1;O95239;B3KNC0 Q59HG1 857 867 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 2.7555E-05 101.97 2 2 1.2037 1.0862 28.622 4 Median 0.853 0.86586 6.7509 2 0 Median 1.7336 1.399 10.49 2 0 Median 73695000 37544000 36151000 58008000 31265000 26743000 15687000 6279100 9407500 14946 1803 15351 39666;39667;39668;39669 62264;62265;62266;62267;62268;62269 62264 6 WEQELNAK NYLVQKAKQRRALRRWEQELNAKRSHLGRI QRRALRRWEQELNAKRSHLGRITVENEVDL R W E A K R 1 0 1 0 0 1 2 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 8 0 1016.4927 O43463;B4DMP6 O43463 131 138 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes no 2 0.012238 68.081 1 1.6654 1.3681 NaN 1 Median NaN NaN NaN 0 0 Median 1.6654 1.3681 NaN 1 0 Median 2406500 968860 1437700 0 0 0 2406500 968860 1437700 14947 1385 15352 39670 62270 62270 1 WEVCLTMSEK TGNSLKVIHEQVNHRWEVCLTMSEKGFQQI QVNHRWEVCLTMSEKGFQQISFVNSIATSK R W E E K G 0 0 0 0 1 0 2 0 0 0 1 1 1 0 0 1 1 1 0 1 0 0 10 0 1281.5733 P11388 P11388 297 306 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0087523 47.603 2 1 0.93993 0.98973 23.907 3 Plateau 0.95167 0.98537 0.93025 2 0 Median 0.8107 0.65138 NaN 1 0 Median 68807000 34323000 34484000 60952000 29799000 31153000 7854400 4524300 3330100 14948 1471 15353 39671;39672;39673 62271;62272;62273;62274;62275 62271 1214 5 WFEENASQSTVK IKVLQSALAAIRHARWFEENASQSTVKVLI HARWFEENASQSTVKVLIRLLKDLRIRFPG R W F V K V 1 0 1 0 0 1 2 0 0 0 0 1 0 1 0 2 1 1 0 1 0 0 12 0 1424.6572 B4DY09;Q53FG3;F4ZW62;Q12905;F4ZW63 B4DY09 172 183 ILF2 Interleukin enhancer-binding factor 2 yes no 2 0.00086033 80.102 2 1.2784 1.3019 NaN 1 Median 1.2784 1.3019 NaN 1 0 Median NaN NaN NaN 0 0 Median 24966000 14846000 10121000 24966000 14846000 10121000 0 0 0 14949 1049 15354 39674;39675 62276;62277;62278 62276 3 WFLTCINQPQFR VLEPSFRQAFPNTNRWFLTCINQPQFRAVL TNRWFLTCINQPQFRAVLGEVKLCEKMAQF R W F F R A 0 1 1 0 1 2 0 0 0 1 1 0 0 2 1 0 1 1 0 0 0 0 12 0 1608.7871 Q53YD7;P26641 Q53YD7 190 201 EEF1G Elongation factor 1-gamma yes no 2 0.00019051 76.827 2 1.8203 1.8322 13.81 2 Median 1.8203 1.8322 13.81 2 0 Median NaN NaN NaN 0 0 Median 16124000 6590900 9533400 16124000 6590900 9533400 0 0 0 14950 1522 15355 39676;39677 62279;62280 62280 2 WFNGQPIHAELSPVTDFR REEDAEKAVIDLNNRWFNGQPIHAELSPVT GQPIHAELSPVTDFREACCRQYEMGECTRG R W F F R E 1 1 1 1 0 1 1 1 1 1 1 0 0 2 2 1 1 1 0 1 0 0 18 0 2113.0381 P0DN76;Q01081;Q7Z780;B5BU08 P0DN76 134 151 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 3 1.9111E-05 54.368 2 2 1.74 0.72523 78.075 4 Linear 1.401 1.478 13.139 2 0 Median 0.44615 0.38478 2.0933 2 0 Median 50955000 21229000 29726000 41848000 15153000 26695000 9107400 6075600 3031800 14951 1463 15356 39678;39679;39680;39681 62281;62282;62283;62284;62285;62286 62283 6 WFWLLPVK VRVIQLLKINNSKHRWFWLLPVKQSGVPLA INNSKHRWFWLLPVKQSGVPLAKGTLITHC R W F V K Q 0 0 0 0 0 0 0 0 0 0 2 1 0 1 1 0 0 2 0 1 0 0 8 0 1087.6219 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 160 167 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.037693 59.205 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14952 897 15357 39682 62287 62287 1 WGDAGAEYVVESTGVFTTMEK NPITIFQERDPSKIKWGDAGAEYVVESTGV EYVVESTGVFTTMEKAGAHLQGGAKRVIIS K W G E K A 2 0 0 1 0 0 3 3 0 0 0 1 1 1 0 1 3 1 1 3 0 0 21 0 2276.0307 V9HVZ4;P04406;Q2TSD0;Q0QET7;E7EUT5;B4DRV9 V9HVZ4 87 107 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 2.0903E-06 58.079 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7592300 0 7592300 7592300 0 7592300 0 0 0 14953 1442 15358 39683 62288;62289;62290 62288 1149 3 WGDIEFPPPFGR AAKVDATADYICKVKWGDIEFPPPFGREAY KVKWGDIEFPPPFGREAYPEEAYIADLDAK K W G G R E 0 1 0 1 0 0 1 2 0 1 0 0 0 2 3 0 0 1 0 0 0 0 12 0 1416.6826 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396 A0A024R1Y2 233 244 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.007134 59.067 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2970200 2970200 0 2970200 2970200 0 0 0 0 14954 89 15359 39684 62291 62291 1 WGEPPVAVPAPQQADGNPDVPPPRPLQGR CPVLKGRVQKILHWRWGEPPVAVPAPQQAD DGNPDVPPPRPLQGRSEREFFVKWVGLSYW R W G G R S 3 2 1 2 0 3 1 3 0 0 1 0 0 0 9 0 0 1 0 3 0 0 29 1 3041.5472 Q12873;H7C2H0 Q12873 517 545 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 3 0.012835 21.462 1 2 1.323 1.1555 67.099 3 Median 0.39447 0.41292 NaN 1 0 Median 1.4589 1.2973 16.363 2 0 Median 22926000 13625000 9300700 13643000 10176000 3466800 9282700 3448800 5833900 14955 1701 15360 39685;39686;39687 62292;62293;62294;62295;62296 62293 5 WGQPPSPTPVPRPPDADPNTPSPK CPALKGKVQKILIWKWGQPPSPTPVPRPPD VPRPPDADPNTPSPKPLEGRPERQFFVKWQ K W G P K P 1 1 1 2 0 1 0 1 0 0 0 1 0 0 10 2 2 1 0 1 0 0 24 1 2534.2554 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 503 526 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.0030417 37.896 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8122600 8122600 0 8122600 8122600 0 0 0 0 14956 515 15361 39688 62297 62297 1 WGTPVPLEGFEDK LRDGLKPRCITRDLKWGTPVPLEGFEDKVF LKWGTPVPLEGFEDKVFYVWFDATIGYLSI K W G D K V 0 0 0 1 0 0 2 2 0 0 1 1 0 1 2 0 1 1 0 1 0 0 13 0 1473.714 A8K492;P56192;B4DF61;B4E0E9 A8K492 501 513 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.0066862 45.915 1 2.6021 2.5531 NaN 1 Median 2.6021 2.5531 NaN 1 0 Median NaN NaN NaN 0 0 Median 8873500 3347100 5526400 8873500 3347100 5526400 0 0 0 14957 732 15362 39689 62298 62298 1 WGVPIEK LNYLDPRITVAWCKKWGVPIEKIYNKTQRE ITVAWCKKWGVPIEKIYNKTQREKFAWAID K W G E K I 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 1 0 1 0 0 7 0 827.45414 P11387;B9EG90;Q9BVT2 P11387 736 742 TOP1 DNA topoisomerase 1 yes no 2 0.037624 60.76 1 0.89769 0.98869 NaN 1 Median 0.89769 0.98869 NaN 1 0 Median NaN NaN NaN 0 0 Median 55368000 29102000 26266000 55368000 29102000 26266000 0 0 0 14958 1470 15363 39690 62299 62299 1 WISDYADSVPDPEALR LVSTESHPVKSGIHKWISDYADSVPDPEAL ISDYADSVPDPEALRVEVDTFMEAYDQKIA K W I L R V 2 1 0 3 0 0 1 0 0 1 1 0 0 0 2 2 0 1 1 1 0 0 16 0 1832.8581 Q9Y3A4 Q9Y3A4 155 170 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 0.00042585 78.763 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9491500 0 9491500 9491500 0 9491500 0 0 0 14959 2133 15364 39691;39692 62300;62301 62300 2 WISLTNFISEATVEK LDQFLGPYPYATLKKWISLTNFISEATVEK WISLTNFISEATVEKLQPENRQICAFSDVL K W I E K L 1 0 1 0 0 0 2 0 0 2 1 1 0 1 0 2 2 1 0 1 0 0 15 0 1736.8985 A2A2Q9;Q9Y312 A2A2Q9 133 147 AAR2 Protein AAR2 homolog yes no 2 0.0436 38.021 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3724000 0 3724000 3724000 0 3724000 0 0 0 14960 647 15365 39693 62302 62302 1 WITEEQPNSATNLR IQTSSLGLLTGYIRRWITEEQPNSATNLRF RWITEEQPNSATNLRFVLEWTWNKVVLTKE R W I L R F 1 1 2 0 0 1 2 0 0 1 1 0 0 0 1 1 2 1 0 0 0 0 14 0 1657.806 Q8WYP5;Q96M44 Q8WYP5 568 581 AHCTF1 Protein ELYS yes no 2 1.3691E-21 148.19 2 2 1.698 1.5288 29.076 4 Median 1.1883 1.2098 2.242 2 0 Median 2.4486 1.9921 6.5829 2 0 Median 65515000 28710000 36805000 41605000 21234000 20370000 23911000 7476000 16435000 14961 1945 15366 39694;39695;39696;39697 62303;62304;62305;62306;62307;62308;62309;62310;62311 62307 9 WKDSDEADLVLAK IGATDSSGELMFLMKWKDSDEADLVLAKEA MKWKDSDEADLVLAKEANMKCPQIVIAFYE K W K A K E 2 0 0 3 0 0 1 0 0 0 2 2 0 0 0 1 0 1 0 1 0 0 13 1 1488.746 A4D177;Q13185 A4D177 142 154 CBX3 Chromobox protein homolog 3 yes no 2;3 0.00071848 50.484 1 3 1.2529 1.0905 4.0069 4 Median 0.95068 1.0909 NaN 1 0 Median 1.3215 1.1278 4.9074 3 0 Plateau 73692000 34059000 39633000 21816000 11246000 10570000 51876000 22813000 29063000 14962 662 15367 39698;39699;39700;39701 62312;62313;62314;62315;62316;62317 62314 6 WKDTDEADLVLAK IGATDSCGDLMFLMKWKDTDEADLVLAKEA MKWKDTDEADLVLAKEANVKCPQIVIAFYE K W K A K E 2 0 0 3 0 0 1 0 0 0 2 2 0 0 0 0 1 1 0 1 0 0 13 1 1502.7617 V9HWG0;P45973 V9HWG0 142 154 HEL25;CBX5 Chromobox protein homolog 5 yes no 2;3 0.0013691 67.879 2 3 0.89294 0.76196 15.77 5 Median 0.53373 0.62665 2.618 2 0 Median 1.0039 0.84913 6.7819 3 0 Median 95873000 53739000 42135000 49456000 30044000 19412000 46418000 23695000 22722000 14963 1568 15368 39702;39703;39704;39705;39706 62318;62319;62320;62321;62322;62323;62324 62323 7 WLAPDGLIFPDR FYESMLNTVLYARDKWLAPDGLIFPDRATL RDKWLAPDGLIFPDRATLYVTAIEDRQYKD K W L D R A 1 1 0 2 0 0 0 1 0 1 2 0 0 1 2 0 0 1 0 0 0 0 12 0 1398.7296 E9PKG1;Q5U8W9;H7C2I1;Q99873;E9PNR9;E9PQ98;E9PIX6;H0YDE4;B4DJ87 E9PKG1 138 149 PRMT1;HRMT1L2 Protein arginine N-methyltransferase 1 yes no 2 5.6214E-08 112.75 2 2 1.2368 1.2414 17.206 4 Linear 1.2113 1.2102 4.9589 2 0 Median 1.0336 0.90523 4.5348 2 0 Median 22727000 8881100 13845000 19632000 7211400 12420000 3094800 1669700 1425100 14964 1243 15369 39707;39708;39709;39710 62325;62326;62327;62328;62329;62330 62326 6 WLEASEEER SAFVPPEEPPLQPARWLEASEEERQVGLRL PLQPARWLEASEEERQVGLRLRICHGKPVT R W L E R Q 1 1 0 0 0 0 4 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 9 0 1147.5146 Q14137;B2RDN4;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 515 523 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.00092767 88.948 4 2 1.1582 0.96044 0.59721 2 Median NaN NaN NaN 0 0 Median 1.1582 0.96044 0.59721 2 0 Median 105120000 17256000 87866000 68018000 0 68018000 37104000 17256000 19848000 14965 1726 15370 39711;39712;39713;39714;39715;39716 62331;62332;62333;62334;62335;62336;62337 62333 7 WLEVEIAPDIR QTVTCFLKKYNVVKKWLEVEIAPDIRGRIP VVKKWLEVEIAPDIRGRIPLLLTSLSFKVL K W L I R G 1 1 0 1 0 0 2 0 0 2 1 0 0 0 1 0 0 1 0 1 0 0 11 0 1339.7136 Q14690 Q14690 1165 1175 PDCD11 Protein RRP5 homolog yes yes 2 2.7331E-05 102.06 2 2 1.151 0.98533 8.4137 3 Median 0.90177 0.90401 NaN 1 0 Median 1.2026 1.0266 5.807 2 0 Median 35582000 13070000 22512000 26855000 9457400 17398000 8726100 3612600 5113500 14966 1741 15371 39717;39718;39719;39720 62338;62339;62340;62341;62342;62343 62341 6 WLGDLILSK FSTRDIHRNYVDCVRWLGDLILSKSCENAI YVDCVRWLGDLILSKSCENAIVCWKPGKME R W L S K S 0 0 0 1 0 0 0 1 0 1 3 1 0 0 0 1 0 1 0 0 0 0 9 0 1043.6015 O75530;B4DVW7 O75530 314 322 EED Polycomb protein EED yes no 2 0.016855 53.493 2 0.95416 0.97353 1.4111 2 Median 0.95416 0.97353 1.4111 2 0 Median NaN NaN NaN 0 0 Median 20334000 10153000 10181000 20334000 10153000 10181000 0 0 0 14967 1407 15372 39721;39722 62344;62345;62346;62347 62345 4 WLGNLLAR VWLFFMRGITPLLERWLGNLLARQFEGRHS ITPLLERWLGNLLARQFEGRHSKGVAKTVT R W L A R Q 1 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 941.54469 Q6P2Q9;I3L0J9 Q6P2Q9 651 658 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.011674 69.383 1 0.78948 0.782 NaN 1 Median 0.78948 0.782 NaN 1 0 Median NaN NaN NaN 0 0 Median 15580000 8524100 7056000 15580000 8524100 7056000 0 0 0 14968 1854 15373 39723 62348 62348 1 WLNDLLCLDCLNITR LQESIRYAPGDAVEKWLNDLLCLDCLNITR WLNDLLCLDCLNITRIVSGCPLPEACELYY K W L T R I 0 1 2 2 2 0 0 0 0 1 5 0 0 0 0 0 1 1 0 0 0 0 15 0 1917.9441 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 480 494 NAT10 N-acetyltransferase 10 no no 2 2.2135E-15 132.79 1 0.73695 0.75388 NaN 1 Median 0.73695 0.75388 NaN 1 0 Median NaN NaN NaN 0 0 Median 34404000 19088000 15316000 34404000 19088000 15316000 0 0 0 14969 2023;1687 15374 39724 62349 62349 1 WNTDNTLGTEITVEDQLAR TKYRWTEYGLTFTEKWNTDNTLGTEITVED NTLGTEITVEDQLARGLKLTFDSSFSPNTG K W N A R G 1 1 2 2 0 1 2 1 0 1 2 0 0 0 0 0 4 1 0 1 0 0 19 0 2175.0444 A0A1L1UHR1;P21796;B3KTS5;C9JI87 A0A1L1UHR1 75 93 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 6.8369E-06 77.776 2 2 1.7565 1.7194 12.888 4 Median 1.3961 1.5774 2.4154 2 0 Median 2.2511 1.9434 7.5464 2 0 Median 279140000 113250000 165890000 202620000 87880000 114740000 76522000 25371000 51151000 14970 639 15375 39725;39726;39727;39728 62350;62351;62352;62353;62354;62355;62356;62357 62351 8 WNVEDVYEFIR LVGMGHHFLPSEPTKWNVEDVYEFIRSLPG EPTKWNVEDVYEFIRSLPGCQEIAEEFRAQ K W N I R S 0 1 1 1 0 0 2 0 0 1 0 0 0 1 0 0 0 1 1 2 0 0 11 0 1468.6987 B3KPJ4;B4DG61;B7ZLY0;A0A0A0MSI2;Q8IXK0 B3KPJ4 400 410 PHC2 Polyhomeotic-like protein 2 yes no 2 0.0027751 71.349 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5799100 0 5799100 5799100 0 5799100 0 0 0 14971 479 15376 39729;39730 62358;62359 62358 2 WNVSRPSLLADSK MNSSCADILLFASYKWNVSRPSLLADSKDV YKWNVSRPSLLADSKDVMDSTTTQKYWIDI K W N S K D 1 1 1 1 0 0 0 0 0 0 2 1 0 0 1 3 0 1 0 1 0 0 13 1 1471.7783 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1637 1649 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.043827 40.751 1 1 0.92583 0.81956 NaN 1 Median NaN NaN NaN 0 0 Median 0.92583 0.81956 NaN 1 0 Median 14241000 1079500 13161000 11989000 0 11989000 2251700 1079500 1172200 14972 1854 15377 39731;39732 62360;62361 62361 2 WPPEDEISKPEVPEDVDLDLK SGSALEEGIKMSKPKWPPEDEISKPEVPED ISKPEVPEDVDLDLKKLRRSSSLKERSRPF K W P L K K 0 0 0 4 0 0 4 0 0 1 2 2 0 0 4 1 0 1 0 2 0 0 21 1 2449.1901 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 395 415 LIMA1 LIM domain and actin-binding protein 1 yes no 3 0.00039541 35.389 2 1.8278 2.1267 12.52 2 Median 1.8278 2.1267 12.52 2 0 Median NaN NaN NaN 0 0 Median 30246000 11680000 18566000 30246000 11680000 18566000 0 0 0 14973 1010 15378 39733;39734 62362;62363;62364 62362 3 WQAVLAQTDVR EVERWRERVAQLLERWQAVLAQTDVRQREL LLERWQAVLAQTDVRQRELEQLGRQLRYYR R W Q V R Q 2 1 0 1 0 2 0 0 0 0 1 0 0 0 0 0 1 1 0 2 0 0 11 0 1285.6779 Q15149 Q15149 1325 1335 PLEC Plectin yes yes 2 1.7175E-05 91.584 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 842490 0 842490 0 0 0 842490 0 842490 14974 1754 15379 39735;39736;39737;39738 62365;62366;62367;62368 62366 4 WQDIQNDPR DYWLLAGIINHGYARWQDIQNDPRYAILNE NHGYARWQDIQNDPRYAILNEPFKGEMNRG R W Q P R Y 0 1 1 2 0 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 9 0 1170.5418 F5GWX5;A0A0C4DGG9;Q14839;B3KY63;Q6ZU36 F5GWX5 1742 1750 CHD4 Chromodomain-helicase-DNA-binding protein 4 no no 2 0.0033411 72.042 2 1.6545 1.3479 2.2172 2 Median NaN NaN NaN 0 0 Median 1.6545 1.3479 2.2172 2 0 Median 28309000 10494000 17814000 0 0 0 28309000 10494000 17814000 14975 515 15380 39739;39740 62369;62370;62371;62372 62370 4 WQFLTLR FITTDVNPYYDSFVRWQFLTLRERNKIKFG PYYDSFVRWQFLTLRERNKIKFGKRYTIYS R W Q L R E 0 1 0 0 0 1 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 0 7 0 962.53379 B4E266;B4DER1;B2RCM2;Q9P2J5 B4E266 174 180 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.030326 68.915 1 1.6533 1.7151 NaN 1 Median 1.6533 1.7151 NaN 1 0 Median NaN NaN NaN 0 0 Median 5699800 1896800 3803000 5699800 1896800 3803000 0 0 0 14976 883 15381 39741 62373 62373 1 WQGELQR PDFSYCILERLGRSRWQGELQRDLHTTAFK LERLGRSRWQGELQRDLHTTAFKVDAGKLH R W Q Q R D 0 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 7 0 915.45626 Q6AHZ7;Q12789 Q6AHZ7 189 195 DKFZp686A111;GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.048672 58.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9875400 9875400 0 9875400 9875400 0 0 0 0 14977 1699 15382 39742 62374 62374 1 WQHDLFDSGFGGGAGVETGGK NRPAPYSRPKQLPDKWQHDLFDSGFGGGAG DSGFGGGAGVETGGKLLVSNLDFGVSDADI K W Q G K L 1 0 0 2 0 1 1 7 1 0 1 1 0 2 0 1 1 1 0 1 0 0 21 0 2120.9552 E9PB61;Q86V81 E9PB61 94 114 ALYREF THO complex subunit 4 yes no 3 0.01961 19.044 2 0.565 0.44628 1.3706 2 Median NaN NaN NaN 0 0 Median 0.565 0.44628 1.3706 2 0 Median 29561000 17781000 11781000 0 0 0 29561000 17781000 11781000 14978 1229 15383 39743;39744 62375;62376;62377 62376 3 WQLSVATEQPELEGPR ASVTEIQEKWHDSRRWQLSVATEQPELEGP QLSVATEQPELEGPREGYGGFRGQREGSRG R W Q P R E 1 1 0 0 0 2 3 1 0 0 2 0 0 0 2 1 1 1 0 1 0 0 16 0 1838.9163 Q9NR30;Q8NI92 Q9NR30 703 718 DDX21;OK/SW-cl.65 Nucleolar RNA helicase 2 yes no 2 6.9547E-07 90.926 2 2 1.1593 1.0051 0.58991 2 Median NaN NaN NaN 0 0 Median 1.1593 1.0051 0.58991 2 0 Median 217950000 151470000 66482000 91430000 91430000 0 126520000 60042000 66482000 14979 2065 15384 39745;39746;39747;39748 62378;62379;62380;62381;62382;62383;62384 62380 7 WQNNLLPSR VISPRFDVQLKDLEKWQNNLLPSRQFGFIV LKDLEKWQNNLLPSRQFGFIVLTTSAGIMD K W Q S R Q 0 1 2 0 0 1 0 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 9 0 1126.5883 B2R4W8;P62244;I3L3P7;A8K7H3;H3BVC7 B2R4W8 89 97 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 1.4296E-11 151.97 2 2 0.76741 0.77761 14.675 4 Median 0.58352 0.68168 2.7871 2 0 Median 1.0105 0.87736 1.2338 2 0 Median 724060000 419750000 304320000 551560000 332670000 218890000 172500000 87075000 85429000 14980 831 15385 39749;39750;39751;39752 62385;62386;62387;62388;62389;62390;62391;62392 62387 8 WQPGEEPAGSVVQDSR FEKLKPVHGLIFLFKWQPGEEPAGSVVQDS QPGEEPAGSVVQDSRLDTIFFAKQVINNAC K W Q S R L 1 1 0 1 0 2 2 2 0 0 0 0 0 0 2 2 0 1 0 2 0 0 16 0 1740.8067 Q5LJA5;Q5LJA9;Q9Y5K5;Q5LJB0 Q5LJA5 58 73 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 2 0.0037493 55.261 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5976500 0 5976500 5976500 0 5976500 0 0 0 14981 1811 15386 39753 62393 62393 1 WQPTASEPVK STVKGMMAGPMAAFKWQPTASEPVKDADPH MAAFKWQPTASEPVKDADPHFHHFLLSQTE K W Q V K D 1 0 0 0 0 1 1 0 0 0 0 1 0 0 2 1 1 1 0 1 0 0 10 0 1141.5768 D3DUE6;K7EMM8;D3DUE7;Q49A26;K7EPU6;K7EQB2 D3DUE7 224 233 N-PAC;GLYR1 Putative oxidoreductase GLYR1 no no 2 0.007051 57.96 1 1 1.5749 1.4979 24.927 2 Median 1.1148 1.2558 NaN 1 0 Median 2.2248 1.7866 NaN 1 0 Median 73909000 32772000 41136000 59041000 28225000 30815000 14868000 4547100 10321000 14982 1194;1193;1346 15387 39754;39755 62394;62395 62394 2 WQVVDTPGILDHPLEDR TKSLFVGHMDYKYLRWQVVDTPGILDHPLE VVDTPGILDHPLEDRNTIEMQAITALAHLR R W Q D R N 0 1 0 3 0 1 1 1 1 1 2 0 0 0 2 0 1 1 0 2 0 0 17 0 1988.9956 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747 Q8N4P8 215 231 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2;3 2.0551E-07 94.01 2 3 1.5092 1.3171 13.066 5 Median 1.0373 1.178 4.3943 2 0 Median 1.5301 1.3193 11.713 3 0 Median 426110000 191040000 235080000 272740000 133170000 139570000 153370000 57870000 95501000 14983 1183 15388 39756;39757;39758;39759;39760 62396;62397;62398;62399;62400;62401;62402;62403;62404 62400 9 WSDGLFYLGTIK KPACKFEEGQDVLARWSDGLFYLGTIKKIN LARWSDGLFYLGTIKKINILKQSCFIIFED R W S I K K 0 0 0 1 0 0 0 2 0 1 2 1 0 1 0 1 1 1 1 0 0 0 12 0 1398.7184 Q9Y483;Q96G26 Q9Y483 56 67 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.0024048 58.676 2 1 1.1143 1.1171 40.874 3 Median 1.0809 1.0932 3.0593 2 0 Median 2.8087 2.2169 NaN 1 0 Median 18892000 8808100 10084000 16867000 8454600 8412200 2024900 353500 1671400 14984 2143 15389 39761;39762;39763 62405;62406;62407 62406 3 WSEPNEEELIK FLEPEVLDPESVELKWSEPNEEELIKFMCG VELKWSEPNEEELIKFMCGEKQFSEERIRS K W S I K F 0 0 1 0 0 0 4 0 0 1 1 1 0 0 1 1 0 1 0 0 0 0 11 0 1372.6511 Q6FHX6;P39748;B4DWZ4;I3L3E9 Q6FHX6 298 308 FEN1 Flap endonuclease 1 yes no 2 0.018447 53.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5222300 5222300 0 5222300 5222300 0 0 0 0 14985 1555 15390 39764 62408 62408 1 WSLALGLPLPLGEHAGR IDPPVHEVEQGIDAKWSLALGLPLPLGEHA LALGLPLPLGEHAGRIYLCDIGIPQQVFQE K W S G R I 2 1 0 0 0 0 1 3 1 0 5 0 0 0 2 1 0 1 0 0 0 0 17 0 1785.989 Q96F86 Q96F86 457 473 EDC3 Enhancer of mRNA-decapping protein 3 yes yes 3 0.00042626 38.889 1 1.2956 1.2975 NaN 1 Median 1.2956 1.2975 NaN 1 0 Median NaN NaN NaN 0 0 Median 6829000 3286300 3542700 6829000 3286300 3542700 0 0 0 14986 1964 15391 39765 62409 62409 1 WSLLQQQK KVRFLEQQNKMLETKWSLLQQQKTARSNMD NKMLETKWSLLQQQKTARSNMDNMFESYIN K W S Q K T 0 0 0 0 0 3 0 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 8 0 1029.5607 CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8W1U3;F8VP67;CON__Q9H552 CON__P05787 123 130 KRT8 Keratin, type II cytoskeletal 8 yes no 2 1.9115E-12 157.86 3 2 1.8486 1.4837 10.49 3 Median 1.0735 1.2535 NaN 1 0 Median 1.8751 1.5015 1.6845 2 0 Median 312410000 145680000 166730000 273920000 131620000 142300000 38492000 14054000 24438000 + 14987 1156 15392 39766;39767;39768;39769;39770 62410;62411;62412;62413;62414;62415;62416;62417 62411 8 WSPTHEQQLISGSLDNIVK SLSLTSHTGWVTSVKWSPTHEQQLISGSLD HEQQLISGSLDNIVKLWDTRSCKAPLYDLA K W S V K L 0 0 1 1 0 2 1 1 1 2 2 1 0 0 1 3 1 1 0 1 0 0 19 0 2151.096 Q53T99;Q9GZL7;B4DRY7 Q53T99 350 368 WDR12 Ribosome biogenesis protein WDR12 yes no 3 9.3262E-06 56.081 2 2 0.92775 0.88767 10.317 4 Median 0.74188 0.81472 1.3788 2 0 Median 1.1766 0.97236 2.1393 2 0 Median 168420000 83191000 85229000 89696000 46881000 42815000 78724000 36311000 42414000 14988 1792 15393 39771;39772;39773;39774 62418;62419;62420;62421;62422;62423;62424;62425 62424 8 WSTDDVQINDISLQDYIAVK APAVAETPDIKLFGKWSTDDVQINDISLQD VQINDISLQDYIAVKEKYAKYLPHSAGRYA K W S V K E 1 0 1 4 0 2 0 0 0 3 1 1 0 0 0 2 1 1 1 2 0 0 20 0 2322.138 M0R0F0;Q53G25;A0A024R4Q8;P46782 M0R0F0 23 42 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 4.141E-09 94.717 2 1 0.94758 0.96797 2.9212 3 Median 0.92245 0.98487 3.8819 2 0 Median 1.1718 0.96797 NaN 1 0 Median 100450000 50782000 49671000 68863000 36044000 32818000 31590000 14738000 16853000 14989 160 15394 39775;39776;39777 62426;62427;62428;62429;62430;62431 62430 6 WSVESGR DSAIFSAAKDCSIIKWSVESGRKLHVIPRA AKDCSIIKWSVESGRKLHVIPRAKKGAEGK K W S G R K 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 1 0 1 0 0 7 0 819.38752 O43818 O43818 173 179 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.028572 71.715 1 0.69754 0.74793 NaN 1 Median 0.69754 0.74793 NaN 1 0 Median NaN NaN NaN 0 0 Median 46193000 25266000 20928000 46193000 25266000 20928000 0 0 0 14990 1389 15395 39778 62432 62432 1 WSYGAGIVLR EGPKAHIRKLAECIRWSYGAGIVLRLGNIA AECIRWSYGAGIVLRLGNIARLELNYCVPM R W S L R L 1 1 0 0 0 0 0 2 0 1 1 0 0 0 0 1 0 1 1 1 0 0 10 0 1120.6029 Q9Y512 Q9Y512 424 433 SAMM50 Sorting and assembly machinery component 50 homolog no no 2 0.037167 47.198 1 0.8391 0.88227 NaN 1 Median 0.8391 0.88227 NaN 1 0 Median NaN NaN NaN 0 0 Median 11429000 7259800 4168700 11429000 7259800 4168700 0 0 0 14991 2147 15396 39779 62433 62433 1 WTEYGLTFTEK TETTKVTGSLETKYRWTEYGLTFTEKWNTD TKYRWTEYGLTFTEKWNTDNTLGTEITVED R W T E K W 0 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 3 1 1 0 0 0 11 0 1373.6503 A0A1L1UHR1;P21796;B3KTS5;C9JI87 A0A1L1UHR1 64 74 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 7.8729E-05 98.055 2 2 1.6872 1.6287 5.6192 4 Median 1.3753 1.5552 5.3439 2 0 Median 2.0872 1.6775 2.9854 2 0 Median 240610000 101240000 139370000 219440000 94930000 124510000 21168000 6307100 14861000 14992 639 15397 39780;39781;39782;39783 62434;62435;62436;62437;62438;62439;62440 62436 7 WTLLQEQGTK KVRFLEQQNKVLDTKWTLLQEQGTKTVRQN VLDTKWTLLQEQGTKTVRQNLEPLFEQYIN K W T T K T 0 0 0 0 0 2 1 1 0 0 2 1 0 0 0 0 2 1 0 0 0 0 10 0 1202.6295 B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;F8W0C6 CON__P13647 200 209 KRT6C;KRT6A;KRT5 Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5 no no 2 4.2294E-22 153.08 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140140000 140140000 0 101310000 101310000 0 38829000 38829000 0 + 14993 1162;859;1154 15398 39784;39785;39786 62441;62442;62443;62444 62443 4 WTLLQEQK KVRFLEQQNKLLETKWTLLQEQKSAKSSRL NKLLETKWTLLQEQKSAKSSRLPDIFEAQI K W T Q K S 0 0 0 0 0 2 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 8 0 1044.5604 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 123 130 KRT7 Keratin, type II cytoskeletal 7 no no 2 0.0029782 105.04 3 0.82389 0.89685 NaN 1 Median 0.82389 0.89685 NaN 1 0 Median NaN NaN NaN 0 0 Median 58338000 40757000 17581000 58338000 40757000 17581000 0 0 0 + 14994 1171;1158 15399 39787;39788;39789 62445;62446;62447 62445 3 WTTLNSLQLHGLQLR SGDGTMRKNIDVWKKWTTLNSLQLHGLQLR WTTLNSLQLHGLQLRIATRGAEQLAEGGRM K W T L R I 0 1 1 0 0 2 0 1 1 0 5 0 0 0 0 1 2 1 0 0 0 0 15 0 1778.9792 Q08J23 Q08J23 287 301 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 0.00023849 48.112 2 1.0656 1.0918 4.4618 2 Median 1.0656 1.0918 4.4618 2 0 Median NaN NaN NaN 0 0 Median 30734000 14473000 16261000 30734000 14473000 16261000 0 0 0 14995 1694 15400 39790;39791 62448;62449;62450;62451;62452 62452 5 WVEISNEVR KVAFKDFSGDMCKLKWVEISNEVRKFRTLT DMCKLKWVEISNEVRKFRTLTELILDAQEH K W V V R K 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 1 0 2 0 0 9 0 1130.572 E9PKP7;P17480;A8K962;B4DNQ1;Q05BZ1;Q9BQR2 E9PKP7 72 80 UBTF Nucleolar transcription factor 1 yes no 2 0.001665 82.452 1 2 0.50265 0.56918 NaN 1 Median 0.50265 0.56918 NaN 1 0 Median NaN NaN NaN 0 0 Median 128330000 68795000 59536000 105470000 68795000 36678000 22858000 0 22858000 14996 1244 15401 39792;39793;39794 62453;62454;62455;62456 62453 4 WVGGPEIELIAIATGGR EANHLLLQNNLPAVRWVGGPEIELIAIATG GGPEIELIAIATGGRIVPRFSELTAEKLGF R W V G R I 2 1 0 0 0 0 2 4 0 3 1 0 0 0 1 0 1 1 0 1 0 0 17 0 1737.9414 B4DE30;E7ENZ3;B4DYC8;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;Q96GI1;B4DX08;B4DZY9 B4DE30 249 265 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 2 6.7747E-05 72.089 2 3.4544 3.7377 NaN 1 Median 3.4544 3.7377 NaN 1 0 Median NaN NaN NaN 0 0 Median 5367200 451980 4915200 5367200 451980 4915200 0 0 0 14997 960 15402 39795;39796 62457;62458 62457 2 WVLTGTPIQNSLK AQQTKAVLDLESERRWVLTGTPIQNSLKDL RRWVLTGTPIQNSLKDLWSLLSFLKLKPFI R W V L K D 0 0 1 0 0 1 0 1 0 1 2 1 0 0 1 1 2 1 0 1 0 0 13 0 1455.8086 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;H7C5K0 Q59GQ7 582 594 HLTF Helicase-like transcription factor yes no 2 0.015917 50.292 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 14998 512 15403 39797 62459 62459 1 WVSSLAVHPAGDNVICGSYDSK LLRQELTKKLMPNCKWVSSLAVHPAGDNVI HPAGDNVICGSYDSKLVWFDLDLSTKPYRM K W V S K L 2 0 1 2 1 0 0 2 1 1 1 1 0 0 1 4 0 1 1 3 0 0 22 0 2361.1059 Q14137;B2RDN4;B4DEN9;Q4G0D9;Q6DKJ9 Q14137 622 643 BOP1 Ribosome biogenesis protein BOP1 yes no 3 2.3806E-05 36.923 2 2 0.95594 0.8701 20.028 4 Median 0.7171 0.73333 3.2213 2 0 Median 1.2741 1.0341 3.4537 2 0 Median 57081000 27630000 29451000 39832000 19784000 20048000 17249000 7845700 9403700 14999 1726 15404 39798;39799;39800;39801 62460;62461;62462;62463;62464;62465;62466;62467;62468 62465 9 WYDLEYSNEYSLKPQPQDVVSK EFFERQTLLLRPGGKWYDLEYSNEYSLKPQ NEYSLKPQPQDVVSKYKTLAQKLYQHEINL K W Y S K Y 0 0 1 2 0 2 2 0 0 0 2 2 0 0 2 3 0 1 3 2 0 0 22 1 2687.2755 B2R5U7;Q03701 B2R5U7 183 204 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 2.9093E-05 39.288 2 2 1.0774 0.91482 13.341 3 Median 0.66637 0.7602 NaN 1 0 Median 1.1117 0.94922 5.2194 2 0 Median 31436000 11453000 19983000 18052000 5148200 12903000 13384000 6304900 7079600 15000 836;1683 15405 39802;39803;39804;39805 62469;62470;62471;62472;62473;62474;62475;62476 62475 8 YAAPEQNNDPQQSK SAPFFIPTIPGLVPRYAAPEQNNDPQQSKV RYAAPEQNNDPQQSKVVNLGVLAQKSDFCL R Y A S K V 2 0 2 1 0 3 1 0 0 0 0 1 0 0 2 1 0 0 1 0 0 0 14 0 1588.7118 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 745 758 WDR36 WD repeat-containing protein 36 yes no 2 2.8627E-57 193.28 2 1 0.87495 0.94457 14.146 3 Median 0.87174 0.91736 4.1336 2 0 Median 1.4708 1.1659 NaN 1 0 Median 50610000 26223000 24387000 44232000 23586000 20646000 6378500 2637500 3741000 15001 486 15406 39806;39807;39808 62477;62478;62479;62480;62481 62477 5 YADLTEDQLPSCESLK EPDHPFYSNISKDRRYADLTEDQLPSCESL ADLTEDQLPSCESLKDTIARALPFWNEEIV R Y A L K D 1 0 0 2 1 1 2 0 0 0 3 1 0 0 1 2 1 0 1 0 0 0 16 0 1867.851 B4DMJ7;B4DKL5;Q6P6D7;Q6FHU2;Q6FHK8;Q53G35;P18669;Q0D2Q6 B4DMJ7 17 32 hCG_2015269;PGAM1 Phosphoglycerate mutase;Phosphoglycerate mutase 1 yes no 2 1.1127E-08 99.011 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4769300 0 4769300 4769300 0 4769300 0 0 0 15002 991 15407 39809 62482 62482 1 YADVIIPR FVKPAFEEFCLPTKKYADVIIPRGADNLVA FCLPTKKYADVIIPRGADNLVAINLIVQHI K Y A P R G 1 1 0 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 1 0 0 8 0 945.52837 A0A024R912;Q9BZX2;A0A0S2Z5Y6;A0A0S2Z601;Q9HA47 A0A024R912 203 210 UCK2;UCK1 Uridine kinase;Uridine-cytidine kinase 2;Uridine-cytidine kinase 1 yes no 2 0.034622 60.682 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15003 268 15408 39810 62483 62483 1 YAELSEEDLK VAKTTRYEFEQQRYRYAELSEEDLKQLLAL QQRYRYAELSEEDLKQLLALKGSSYSGLLE R Y A L K Q 1 0 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 10 0 1195.5608 Q4G0N4 Q4G0N4 89 98 NADK2 NAD kinase 2, mitochondrial yes yes 2 0.014006 56.013 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15004 1780 15409 39811 62484 62484 1 YAFSGVAFTGAK IKEKLSQGVTLVVDRYAFSGVAFTGAKENF VDRYAFSGVAFTGAKENFSLDWCKQPDVGL R Y A A K E 3 0 0 0 0 0 0 2 0 0 0 1 0 2 0 1 1 0 1 1 0 0 12 0 1217.6081 H7BZ20;Q6FGU2;Q53F55;P23919 H7BZ20 94 105 DTYMK Thymidylate kinase yes no 2 0.0080792 57.347 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9881400 0 9881400 9881400 0 9881400 0 0 0 15005 1313 15410 39812 62485 62485 1 YAGPEDDAAITLAFSK KEYFADMERHRILFRYAGPEDDAAITLAFS AGPEDDAAITLAFSKKKIDDRKEWLTNFME R Y A S K K 4 0 0 2 0 0 1 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 16 0 1667.8043 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 633 648 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 1.7242E-12 109.22 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 126260000 126260000 0 110350000 110350000 0 15916000 15916000 0 15006 1679 15411 39813;39814;39815 62486;62487;62488 62488 3 YAHVVLR KIAFAITAIKGVGRRYAHVVLRKADIDLTK AIKGVGRRYAHVVLRKADIDLTKRAGELTE R Y A L R K 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 7 0 856.49192 P62269 P62269 40 46 RPS18 40S ribosomal protein S18 yes yes 2 1.2133E-06 154.34 2 1 1.1849 1.3953 10.958 2 Median 1.1849 1.3953 10.958 2 0 Median NaN NaN NaN 0 0 Median 1055600000 470910000 584740000 1048200000 470910000 577290000 7443800 0 7443800 15007 1639 15412 39816;39817;39818 62489;62490;62491;62492;62493 62490 5 YAICSALAASALPALVMSK TWRRWHRRVNTTQKRYAICSALAASALPAL SALAASALPALVMSKGHRIEEVPELPLVVE R Y A S K G 6 0 0 0 1 0 0 0 0 1 3 1 1 0 1 3 0 0 1 1 0 0 19 0 1936.0162 P36578;Q59GY2;B4DMJ6;H3BM89;B4DFI6;B4DMJ2;H3BTP7 P36578 122 140 RPL4 60S ribosomal protein L4 yes no 2 2.9736E-12 103.83 2 2 0.84386 0.81201 36.418 4 Median 0.94196 1.08 1.0931 2 0 Median 0.71084 0.57832 8.7577 2 0 Median 421500000 214310000 207190000 365550000 182440000 183110000 55941000 31866000 24075000 15008 1548 15413 39819;39820;39821;39822 62494;62495;62496;62497;62498;62499;62500 62494 1305 7 YAILNEPFK NHGYARWQDIQNDPRYAILNEPFKGEMNRG IQNDPRYAILNEPFKGEMNRGNFLEIKNKF R Y A F K G 1 0 1 0 0 0 1 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 9 0 1093.5808 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1751 1759 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.00021282 106.04 2 2.0198 1.6505 2.7174 2 Median NaN NaN NaN 0 0 Median 2.0198 1.6505 2.7174 2 0 Median 58249000 19883000 38366000 0 0 0 58249000 19883000 38366000 15009 515 15414 39823;39824 62501;62502;62503;62504 62503 4 YAINPHLTEDQR PRGLRYSLPTPKGGKYAINPHLTEDQRFPQ GGKYAINPHLTEDQRFPQLRLSQKARQKTN K Y A Q R F 1 1 1 1 0 1 1 0 1 1 1 0 0 0 1 0 1 0 1 0 0 0 12 0 1455.7106 B2RAR2;Q9ULX3 B2RAR2 334 345 NOB1 RNA-binding protein NOB1 yes no 2 0.002054 71.03 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3760600 0 3760600 3760600 0 3760600 0 0 0 15010 874 15415 39825 62505 62505 1 YAIQLITAASLVCR AYTVLTRIGLETSLRYAIQLITAASLVCRK RYAIQLITAASLVCRKRKGTEVQVDDIKRV R Y A C R K 3 1 0 0 1 1 0 0 0 2 2 0 0 0 0 1 1 0 1 1 0 0 14 0 1577.8599 Q9Y230;B3KNL2 Q9Y230 401 414 RUVBL2 RuvB-like 2 yes no 2 1.1878E-05 98.898 2 1.1462 0.96692 5.2126 2 Median NaN NaN NaN 0 0 Median 1.1462 0.96692 5.2126 2 0 Median 11880000 5453900 6426300 0 0 0 11880000 5453900 6426300 15011 2120 15416 39826;39827 62506;62507;62508;62509 62506 4 YALIQHQK QGKKCRYCDAVFHERYALIQHQKSHKNEKR DAVFHERYALIQHQKSHKNEKRFKCDQCDY R Y A Q K S 1 0 0 0 0 2 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 8 0 999.55016 P49711;V9GY73;A6XGM9;B2RA05;Q8NI51 P49711 480 487 CTCF;CTCFL Transcriptional repressor CTCF;Transcriptional repressor CTCFL yes no 2 0.0010071 132.72 2 3 0.52156 0.52097 8.0969 3 Median 0.47317 0.51608 11.425 2 0 Median 0.66134 0.52097 NaN 1 0 Median 84273000 56538000 27735000 80393000 54322000 26071000 3879700 2215200 1664500 15012 1585 15417 39828;39829;39830;39831;39832 62510;62511;62512;62513;62514;62515 62510 6 YALQMEQLNGILLHLESELAQTR LKASLENSLREVEARYALQMEQLNGILLHL NGILLHLESELAQTRAEGQRQAQEYEALLN R Y A T R A 2 1 1 0 0 3 3 1 1 1 6 0 1 0 0 1 1 0 1 0 0 0 23 0 2669.3847 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 331 353 KRT18 Keratin, type I cytoskeletal 18 yes no 3 2.1713E-60 172.42 1 1.4216 1.6818 NaN 1 Median 1.4216 1.6818 NaN 1 0 Median NaN NaN NaN 0 0 Median 313220000 128410000 184810000 313220000 128410000 184810000 0 0 0 15013 316 15418 39833 62516;62517;62518 62516 238 3 YALTGDEVK RECLPLIIFLRNRLKYALTGDEVKKICMQR LRNRLKYALTGDEVKKICMQRFIKIDGKVR K Y A V K K 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 0 994.49713 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;B7Z1M6;Q53HI6 B2R491 54 62 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 2.434E-05 114.5 2 2 0.9992 0.99144 25.573 4 Median 1.0463 1.2352 1.1522 2 0 Median 0.94789 0.79353 1.5513 2 0 Median 1088900000 542000000 546940000 993130000 492300000 500830000 95807000 49697000 46109000 15014 824 15419 39834;39835;39836;39837 62519;62520;62521;62522;62523;62524;62525;62526;62527;62528;62529;62530;62531;62532;62533 62522 15 YALTGDEVKK RECLPLIIFLRNRLKYALTGDEVKKICMQR RNRLKYALTGDEVKKICMQRFIKIDGKVRT K Y A K K I 1 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 1 1 0 0 10 1 1122.5921 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;B7Z1M6;Q53HI6 B2R491 54 63 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2;3 4.7843E-08 120.15 3 2 0.95333 0.88585 13.395 5 Median 0.95145 1.123 13.237 3 0 Plateau 1.0207 0.86745 2.4256 2 0 Median 216150000 111680000 104470000 153800000 81485000 72319000 62342000 30191000 32151000 15015 824 15420 39838;39839;39840;39841;39842 62534;62535;62536;62537;62538;62539 62534 5 YALYDATYETK PYATFVKMLPDKDCRYALYDATYETKESKK KDCRYALYDATYETKESKKEDLVFIFWAPE R Y A T K E 2 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 2 0 3 0 0 0 11 0 1336.6187 G3V1A4;V9HWI5;E9PK25;P23528;E9PP50;E9PLJ3;B4E112;E9PQB7;Q549N0;Q9Y281 G3V1A4 65 75 CFL1;HEL-S-15;CFL2 Cofilin-1;Cofilin-2 yes no 2 6.8436E-08 114.5 2 2 4.4091 3.6502 27.7 4 Linear 4.3138 4.7554 8.1276 2 0 Median 3.6774 2.9637 0.18688 2 0 Median 121000000 24277000 96724000 108480000 21622000 86859000 12521000 2655900 9864600 15016 1242 15421 39843;39844;39845;39846 62540;62541;62542;62543;62544;62545;62546 62542 7 YANEVNSDAGAFK KKWSEALVLYDRVLKYANEVNSDAGAFKNS LKYANEVNSDAGAFKNSLKDLPDVQELITQ K Y A F K N 3 0 2 1 0 0 1 1 0 0 0 1 0 1 0 1 0 0 1 1 0 0 13 0 1384.6259 Q9UHB9;B4DVI7;Q96K98;Q96K97 Q9UHB9 492 504 SRP68 Signal recognition particle subunit SRP68 yes no 2 2.058E-13 129.16 1 1.15 1.2001 NaN 1 Median 1.15 1.2001 NaN 1 0 Median NaN NaN NaN 0 0 Median 16774000 6301900 10472000 16774000 6301900 10472000 0 0 0 15017 2101 15422 39847 62547 62547 1 YAPGDAVEK SARTLYEVSLQESIRYAPGDAVEKWLNDLL LQESIRYAPGDAVEKWLNDLLCLDCLNITR R Y A E K W 2 0 0 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 1 1 0 0 9 0 948.45526 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 471 479 NAT10 N-acetyltransferase 10 no no 2 0.0019674 78.516 2 1 0.8992 1.0228 6.5364 3 Median 0.89057 1.0042 2.5926 2 0 Median 1.3758 1.1194 NaN 1 0 Median 298150000 154830000 143320000 267670000 142240000 125430000 30486000 12591000 17895000 15018 2023;1687 15423 39848;39849;39850 62548;62549;62550 62549 3 YAPTEAQLNAVDALIDSMSLAK DLRQYMFSSLKNSKKYAPTEAQLNAVDALI LNAVDALIDSMSLAKKDEKTDTLEDLFPTT K Y A A K K 5 0 1 2 0 1 1 0 0 1 3 1 1 0 1 2 1 0 1 1 0 0 22 0 2320.1621 P13010;Q53T09 P13010 444 465 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 4.384E-16 106.19 2 0.49219 0.55299 1.4195 2 Median 0.49219 0.55299 1.4195 2 0 Median NaN NaN NaN 0 0 Median 177320000 119760000 57553000 177320000 119760000 57553000 0 0 0 15019 1476 15424 39851;39852 62551;62552;62553 62553 1222 3 YAQAGFEGFK FGSEEQLLPVEKLPKYAQAGFEGFKTLNRI EKLPKYAQAGFEGFKTLNRIQSKLYRAALE K Y A F K T 2 0 0 0 0 1 1 2 0 0 0 1 0 2 0 0 0 0 1 0 0 0 10 0 1116.524 O75643;A4FU77;Q9H8B9 O75643 470 479 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 5.1419E-10 135.79 2 2 0.9532 1.0356 13.783 4 Linear 0.89413 1.016 6.7216 2 0 Median 1.0009 0.80886 2.1999 2 0 Median 296230000 145110000 151120000 282030000 138020000 144020000 14198000 7094300 7103700 15020 1411 15425 39853;39854;39855;39856 62554;62555;62556;62557;62558;62559;62560 62557 7 YAQGFLPEK PVGRSSLLVGNLKKKYAQGFLPEKLPQQDH GNLKKKYAQGFLPEKLPQQDHTTTTDSEME K Y A E K L 1 0 0 0 0 1 1 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 9 0 1051.5338 B3KPJ4;B4DG61;B7ZLY0;A0A0A0MSI2;Q8IXK0;P78365 B3KPJ4 207 215 PHC2;HPH2 Polyhomeotic-like protein 2 yes no 2 0.0020692 88.819 2 2 1.8247 1.6433 10.101 4 Median 1.5087 1.5046 2.3723 2 0 Median 2.231 1.7876 1.7993 2 0 Median 29844000 12712000 17132000 24897000 11095000 13801000 4947500 1617200 3330300 15021 479 15426 39857;39858;39859;39860 62561;62562;62563;62564;62565 62562 5 YAQVTNNPENDGCINAVLLV ELGLVTQGGKVIWGKYAQVTNNPENDGCIN NNPENDGCINAVLLV_______________ K Y A L V - 2 0 4 1 1 1 1 1 0 1 2 0 0 0 1 0 1 0 1 3 0 0 20 0 2203.0579 Q5J7U2;O95478 Q5J7U2 241 260 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 0.0048359 41.052 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8985700 0 0 8985700 0 0 0 0 0 15022 1427 15427 39861 62566 62566 1 YASETLQAQSEEAR EEALVRRKKMELLQKYASETLQAQSEEARR KYASETLQAQSEEARRLLGY__________ K Y A A R R 3 1 0 0 0 2 3 0 0 0 1 0 0 0 0 2 1 0 1 0 0 0 14 0 1581.7271 Q9ULR0 Q9ULR0 267 280 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes yes 2 1.5467E-10 108.98 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2697500 0 2697500 2697500 0 2697500 0 0 0 15023 2111 15428 39862;39863;39864 62567;62568;62569 62569 3 YASINAHLGIEQSR HIPYREDKNLTGTARYASINAHLGIEQSRR RYASINAHLGIEQSRRDDMESLGYVLMYFN R Y A S R R 2 1 1 0 0 1 1 1 1 2 1 0 0 0 0 2 0 0 1 0 0 0 14 0 1557.79 V9HW00;P48729;B4E1D9;Q05DL3;D6REM4;H0Y9X2;U3KQK7;B4DFH4;Q6PJ06;E7ETM0;B4DER9;Q8N752 V9HW00 187 200 HEL-S-77p;CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 3 0.00029408 57.136 1 1.1991 1.0022 NaN 1 Median NaN NaN NaN 0 0 Median 1.1991 1.0022 NaN 1 0 Median 3451800 1482900 1968900 0 0 0 3451800 1482900 1968900 15024 1577 15429 39865 62570 62570 1 YASINTHLGIEQSR HIPYRENKNLTGTARYASINTHLGIEQSRR RYASINTHLGIEQSRRDDLESLGYVLMYFN R Y A S R R 1 1 1 0 0 1 1 1 1 2 1 0 0 0 0 2 1 0 1 0 0 0 14 0 1587.8005 B4DIJ9;Q59FJ7;B4E0G1;A0A024R8X3;H7BYT1;P48730;J3QQI9;B0QY36;H0Y645;B0QY35;B0QY34;Q5U045;Q53EZ1;B3KRV2;P49674 B4DIJ9 68 81 CSNK1D;CSNK1E Casein kinase I isoform delta;Casein kinase I isoform epsilon yes no 3 0.027676 35.037 1 0.67988 0.66867 NaN 1 Median 0.67988 0.66867 NaN 1 0 Median NaN NaN NaN 0 0 Median 13431000 7063600 6367100 13431000 7063600 6367100 0 0 0 15025 263 15430 39866 62571 62571 0 YASWAASQINR SNPKASAKTKKDNMKYASWAASQINRAYQF DNMKYASWAASQINRAYQFAGRSKKETKYS K Y A N R A 3 1 1 0 0 1 0 0 0 1 0 0 0 0 0 2 0 1 1 0 0 0 11 0 1265.6153 Q53HG5;A8K4K9;Q15006 Q53HG5 256 266 EMC2 ER membrane protein complex subunit 2 yes no 2 0.046279 45.368 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4517000 4517000 0 4517000 4517000 0 0 0 0 15026 736 15431 39867 62572 62572 1 YATGENTVFVDTK FCSIEGEWNGVMYAKYATGENTVFVDTKKL AKYATGENTVFVDTKKLPIIKKKVRKLEDQ K Y A T K K 1 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 3 0 1 2 0 0 13 0 1443.6882 B3KW33;B7Z4Q6;B1AKJ6;Q96SU4;Q9BRN2;A0A096LPC8 B3KW33 418 430 OSBPL9 Oxysterol-binding protein;Oxysterol-binding protein-related protein 9 yes no 2 7.0176E-06 100.55 3 3.1407 3.1931 NaN 1 Median 3.1407 3.1931 NaN 1 0 Median NaN NaN NaN 0 0 Median 20973000 4606100 16366000 20973000 4606100 16366000 0 0 0 15027 815 15432 39868;39869;39870 62573;62574;62575;62576 62573 4 YATLPNIMK LPAVVTADLRLNEPRYATLPNIMKAKKKKI RLNEPRYATLPNIMKAKKKKIEVIKPGDLG R Y A M K A 1 0 1 0 0 0 0 0 0 1 1 1 1 0 1 0 1 0 1 0 0 0 9 0 1049.558 P38117;M0QY67 P38117 192 200 ETFB Electron transfer flavoprotein subunit beta yes no 2 0.0062561 58.815 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21923000 0 21923000 21923000 0 21923000 0 0 0 15028 1551 15433 39871 62577 62577 1307 1 YATSCYSCCPR LDGSQYNPVKQQLVRYATSCYSCCPRLASV QLVRYATSCYSCCPRLASVLLYSDYGIGEV R Y A P R L 1 1 0 0 3 0 0 0 0 0 0 0 0 0 1 2 1 0 2 0 0 0 11 0 1423.5319 Q13057;K7ES73;K7EN91;K7EPC2 Q13057 136 146 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 2 0.015176 46.462 1 1.4978 1.4902 NaN 1 Median 1.4978 1.4902 NaN 1 0 Median NaN NaN NaN 0 0 Median 7802600 2724400 5078200 7802600 2724400 5078200 0 0 0 15029 1704 15434 39872 62578 62578 1 YAVGEECDFEVGK LEKLVDTAWLEIMTKYAVGEECDFEVGKEK TKYAVGEECDFEVGKEKMLKVKIVKIHPLE K Y A G K E 1 0 0 1 1 0 3 2 0 0 0 1 0 1 0 0 0 0 1 2 0 0 13 0 1501.6395 Q9UIG0 Q9UIG0 114 126 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 2.6453E-09 114.83 2 2 53.2 42.668 NaN 1 Median NaN NaN NaN 0 0 Median 53.2 42.668 NaN 1 0 Median 102510000 468380 102040000 60687000 0 60687000 41824000 468380 41356000 15030 2103 15435 39873;39874;39875;39876 62579;62580;62581;62582 62580 4 YAVLYQPLFDK IEAKFYEEVHDLERKYAVLYQPLFDKRFEI LERKYAVLYQPLFDKRFEIINAIYEPTEEE K Y A D K R 1 0 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 2 1 0 0 11 0 1355.7125 F8VY35;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8W020;F8W118;F8VXI6;F8VUX1;F8VV59;A0A024RBE6;F8W0J6;B7Z2V4;H0YH88;H0YHC3;F8W543;B7Z9C2;F8VRJ2;B7Z5H0;F8VVB5 F8VY35 106 116 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2 0.00024966 105.4 2 2 1.2162 1.2209 6.3616 4 Median 0.99457 1.1479 2.2441 2 0 Median 1.4904 1.2787 0.08024 2 0 Median 650980000 306250000 344730000 452380000 226790000 225590000 198610000 79468000 119140000 15031 332 15436 39877;39878;39879;39880 62583;62584;62585;62586;62587;62588;62589;62590;62591 62583 9 YAVNVALQK QESLSVLRSSNEFMRYAVNVALQKVQQLKE SNEFMRYAVNVALQKVQQLKETGHVSGPDG R Y A Q K V 2 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 1004.5655 B7ZMF2;Q9NVI1 B7ZMF2 841 849 FANCI Fanconi anemia group I protein yes no 2 0.029533 53.166 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15032 1116 15437 39881 62592 62592 1 YAVPSAGLR NFVLKAIRPQIDLKRYAVPSAGLRLFALHA QIDLKRYAVPSAGLRLFALHASQFSTCLLD R Y A L R L 2 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 9 0 932.50797 P78527;B4DL41 P78527 265 273 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.038591 42.599 1 0.76379 0.88782 NaN 1 Median 0.76379 0.88782 NaN 1 0 Median NaN NaN NaN 0 0 Median 59700000 33049000 26651000 59700000 33049000 26651000 0 0 0 15033 1665 15438 39882 62593 62593 1 YAWQGVALLPFVDER DFYPEDFAIDLNGKKYAWQGVALLPFVDER YAWQGVALLPFVDERRLRAALEEVYPDLTP K Y A E R R 2 1 0 1 0 1 1 1 0 0 2 0 0 1 1 0 0 1 1 2 0 0 15 0 1762.9043 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 566 580 XRN2 5-3 exoribonuclease 2 yes no 2 0.00053322 55.452 1 0.87887 0.93598 NaN 1 Median 0.87887 0.93598 NaN 1 0 Median NaN NaN NaN 0 0 Median 3662900 1927800 1735100 3662900 1927800 1735100 0 0 0 15034 903 15439 39883 62594 62594 1 YAYYDTER PGRTMGVMFTPLTVKYAYYDTERIGVDLIM FTPLTVKYAYYDTERIGVDLIMKTCFSPNR K Y A E R I 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 8 0 1079.456 B4DMT5;B3KSH1;O00303;B4DEW9 B4DMT5 189 196 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2 0.027047 54.157 2 1.1576 1.1651 16.639 2 Median 1.1576 1.1651 16.639 2 0 Median NaN NaN NaN 0 0 Median 19743000 9529400 10214000 19743000 9529400 10214000 0 0 0 15035 939 15440 39884;39885 62595;62596 62596 2 YCHDLGER KTARIFTHHLCRARRYCHDLGERAGALHAQ HLCRARRYCHDLGERAGALHAQVERLVQQA R Y C E R A 0 1 0 1 1 0 1 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1048.4396 Q9BQG0;I3L1L3 Q9BQG0 889 896 MYBBP1A Myb-binding protein 1A yes no 2;3 0.018936 52.716 2 0.90139 0.93116 8.6274 2 Median 0.90139 0.93116 8.6274 2 0 Median NaN NaN NaN 0 0 Median 19382000 10262000 9120200 19382000 10262000 9120200 0 0 0 15036 1997 15441 39886;39887 62597;62598 62597 2 YCIFANFSVTGGK KGKCLKTYTGHKNEKYCIFANFSVTGGKWI EKYCIFANFSVTGGKWIVSGSEDNLVYIWN K Y C G K W 1 0 1 0 1 0 0 2 0 1 0 1 0 2 0 1 1 0 1 1 0 0 13 0 1462.6915 P61964;Q86VZ2 P61964 260 272 WDR5;WDR5B WD repeat-containing protein 5;WD repeat-containing protein 5B yes no 2 0.016957 36.417 1 1.8252 1.443 NaN 1 Median NaN NaN NaN 0 0 Median 1.8252 1.443 NaN 1 0 Median 5137900 1865200 3272700 0 0 0 5137900 1865200 3272700 15037 1630 15442 39888 62599 62599 1 YCLPFLQPGR AKLGKEIEEYIHKPKYCLPFLQPGRLVKVK IHKPKYCLPFLQPGRLVKVKNEGDDFGWGV K Y C G R L 0 1 0 0 1 1 0 1 0 0 2 0 0 1 2 0 0 0 1 0 0 0 10 0 1249.6278 P42285;A8K6I4;B4E3M6 P42285 649 658 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.0026805 67.981 3 2 0.82969 0.73817 7.102 3 Median 0.74051 0.73817 NaN 1 0 Median 0.86593 0.74465 10.018 2 0 Median 16649000 9858400 6790300 8937900 5819900 3118000 7710900 4038500 3672300 15038 1563 15443 39889;39890;39891;39892;39893 62600;62601;62602;62603;62604;62605;62606 62603 7 YCNSLPDIPFDPK HRTLPERSGVVCRVKYCNSLPDIPFDPKFI VKYCNSLPDIPFDPKFITYPFDQNRFVQYK K Y C P K F 0 0 1 2 1 0 0 0 0 1 1 1 0 1 3 1 0 0 1 0 0 0 13 0 1564.7232 A0A024R0H6;Q8N7H5 A0A024R0H6 35 47 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.038429 41.54 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4404900 4404900 0 4404900 4404900 0 0 0 0 15039 46 15444 39894 62607 62607 1 YCYLQNEVFGLFQK NQLKDMLANFRGSEKYCYLQNEVFGLFQKL KYCYLQNEVFGLFQKLENINGVTDGYLNSL K Y C Q K L 0 0 1 0 1 2 1 1 0 0 2 1 0 2 0 0 0 0 2 1 0 0 14 0 1807.8603 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 739 752 DSP;DSP variant protein Desmoplakin yes no 2 5.8075E-05 91.855 2 0.42947 0.43665 0.45062 2 Median 0.42947 0.43665 0.45062 2 0 Median NaN NaN NaN 0 0 Median 16512000 11709000 4803300 16512000 11709000 4803300 0 0 0 15040 1486 15445 39895;39896 62608;62609 62608 2 YCYYNETHK QDDPFELFIAATNIRYCYYNETHKILGNTF AATNIRYCYYNETHKILGNTFGMCVLQDFE R Y C H K I 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 3 0 0 0 9 0 1276.5183 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 104 112 NAT10 N-acetyltransferase 10 no no 2;3 0.00064672 79.474 3 0.89986 0.95671 6.1296 3 Median 0.89986 0.95671 6.1296 3 0 Median NaN NaN NaN 0 0 Median 51290000 26918000 24372000 51290000 26918000 24372000 0 0 0 15041 2023;1687 15446 39897;39898;39899 62610;62611;62612;62613;62614 62612 5 YDAFGEDSSSAMGVENR KISRMLAAKTVLAIRYDAFGEDSSSAMGVE AFGEDSSSAMGVENRAKLEARLRTLEDRGI R Y D N R A 2 1 1 2 0 0 2 2 0 0 0 0 1 1 0 3 0 0 1 1 0 0 17 0 1833.7476 Q9Y2X3;B3KN82 Q9Y2X3 372 388 NOP58 Nucleolar protein 58 yes no 2 1.3667E-05 82.069 6 4 1.059 0.95663 25.643 6 Median 0.9962 1.1628 2.1864 2 0 Median 1.1235 0.93103 24.642 4 0 Median 579950000 294490000 285450000 502350000 252440000 249910000 77595000 42055000 35540000 15042 2129 15447;15448 39900;39901;39902;39903;39904;39905;39906;39907;39908;39909 62615;62616;62617;62618;62619;62620;62621;62622;62623;62624;62625;62626 62618 1963 12 YDAFLASESLIK KLNKNKKLVKKLAKKYDAFLASESLIKQIP AKKYDAFLASESLIKQIPRILGPGLNKAGK K Y D I K Q 2 0 0 1 0 0 1 0 0 1 2 1 0 1 0 2 0 0 1 0 0 0 12 0 1355.6973 P62906;Q1JQ76;A0A024RCW3 P62906 107 118 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 1.1862E-06 99.283 2 0.84542 0.93949 NaN 1 Median 0.84542 0.93949 NaN 1 0 Median NaN NaN NaN 0 0 Median 50360000 32830000 17530000 50360000 32830000 17530000 0 0 0 15043 1651 15449 39910;39911 62627;62628 62627 2 YDAGEHGLQEAEK FVDYVAVEQLDGDNKYDAGEHGLQEAEKGV NKYDAGEHGLQEAEKGVKFLTLPPVLHLQL K Y D E K G 2 0 0 1 0 1 3 2 1 0 1 1 0 0 0 0 0 0 1 0 0 0 13 0 1445.6423 Q93009;B7ZAX6;Q6U8A4;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q93009 379 391 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 3.8325E-31 174.9 2 0.89628 0.95329 79.614 2 Median 0.89628 0.95329 79.614 2 0 Median NaN NaN NaN 0 0 Median 87211000 55383000 31828000 87211000 55383000 31828000 0 0 0 15044 1954 15450 39912;39913 62629;62630;62631 62629 3 YDDAIQLYDR RVKRLTGMRFEAMERYDDAIQLYDRILQED EAMERYDDAIQLYDRILQEDPTNTAARKRK R Y D D R I 1 1 0 3 0 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 10 0 1270.583 Q53HG5;A8K4K9;Q15006;H0YAS9 Q53HG5 103 112 EMC2 ER membrane protein complex subunit 2 yes no 2 0.035186 40.715 1 0.78282 0.67972 NaN 1 Median NaN NaN NaN 0 0 Median 0.78282 0.67972 NaN 1 0 Median 2331900 1170400 1161500 0 0 0 2331900 1170400 1161500 15045 736 15451 39914 62632 62632 1 YDDYPENGVVQMNSR TSRPALEEDVIYHVKYDDYPENGVVQMNSR YDDYPENGVVQMNSRDVRARARTIIKWQDL K Y D S R D 0 1 2 2 0 1 1 1 0 0 0 0 1 0 1 1 0 0 2 2 0 0 15 0 1785.7628 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 201 215 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.0019103 54.471 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2278000 2278000 0 2278000 2278000 0 0 0 0 15046 406 15452 39915 62633 62633 296 1 YDEIFYNLAPADGK SDDEAEWVVTKDKSKYDEIFYNLAPADGKL KYDEIFYNLAPADGKLSGSKAKTWMVGTKL K Y D G K L 2 0 1 2 0 0 1 1 0 1 1 1 0 1 1 0 0 0 2 0 0 0 14 0 1614.7566 A0A024R0S6;Q9NZN4;B3KUH4;B4DU62;B7ZAY3 A0A024R0S6 453 466 EHD2 EH domain-containing protein 2 yes no 2 0.030429 43.084 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15047 57 15453 39916 62634 62634 1 YDFDSSEVLQGLDFFGNK RFSADAARFQIGKRKYDFDSSEVLQGLDFF DSSEVLQGLDFFGNKKSVPGVCGASQTHQK K Y D N K K 0 0 1 3 0 1 1 2 0 0 2 1 0 3 0 2 0 0 1 1 0 0 18 0 2079.9426 Q9Y2R4;Q59H21;A0A087X1P7;A0A087WTD6;A0A087X069 Q9Y2R4 35 52 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 4.9841E-05 58.098 1 0.99792 0.98987 NaN 1 Median 0.99792 0.98987 NaN 1 0 Median NaN NaN NaN 0 0 Median 6023100 2830800 3192300 6023100 2830800 3192300 0 0 0 15048 2126 15454 39917 62635 62635 1 YDGIILPGK HRISKEEAMRWFQQKYDGIILPGK______ RWFQQKYDGIILPGK_______________ K Y D G K - 0 0 0 1 0 0 0 2 0 2 1 1 0 0 1 0 0 0 1 0 0 0 9 0 974.54368 Q08ES8;Q5VVD0;P62913 Q08ES8 169 177 RPL11 60S ribosomal protein L11 yes no 2 1.8894E-05 119.17 2 2 1.0329 1.0552 10.924 4 Median 0.96642 1.1504 1.3411 2 0 Median 1.122 0.95517 3.214 2 0 Median 2345800000 1159600000 1186200000 2213100000 1099200000 1114000000 132660000 60377000 72280000 15049 1652 15455 39918;39919;39920;39921 62636;62637;62638;62639;62640;62641;62642;62643;62644;62645;62646;62647;62648;62649 62643 14 YDLHQVK EDLPLCSILQQIQEKYDLHQVKKAMLRPAL ILQQIQEKYDLHQVKKAMLRPALFANLFGV K Y D V K K 0 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 901.46577 Q9BQG0;I3L1L3;B4DZZ1;B4DWP5 Q9BQG0 119 125 MYBBP1A Myb-binding protein 1A yes no 2 0.011817 107.32 2 0.89836 1.0075 NaN 1 Median 0.89836 1.0075 NaN 1 0 Median NaN NaN NaN 0 0 Median 105410000 42026000 63385000 105410000 42026000 63385000 0 0 0 15050 1997 15456 39922;39923 62650;62651 62651 2 YDNLITPVVDSLK NPTILFDYILSQIQKYDNLITPVVDSLKYL QKYDNLITPVVDSLKYLTSLNYDVLAYCII K Y D L K Y 0 0 1 2 0 0 0 0 0 1 2 1 0 0 1 1 1 0 1 2 0 0 13 0 1475.7872 Q8NI27;A0A0C4DG98;B4DKZ6 Q8NI27 590 602 THOC2 THO complex subunit 2 yes no 2 0.040464 36.954 1 1.2391 1.2925 NaN 1 Median 1.2391 1.2925 NaN 1 0 Median NaN NaN NaN 0 0 Median 10061000 4062200 5999200 10061000 4062200 5999200 0 0 0 15051 1929 15457 39924 62652 62652 1 YDPPLEDGAMPSAR YNRDGDSYRSPWSNKYDPPLEDGAMPSARL KYDPPLEDGAMPSARLRKLEVEANNAFDQY K Y D A R L 2 1 0 2 0 0 1 1 0 0 1 0 1 0 3 1 0 0 1 0 0 0 14 0 1517.682 B1AK87;B1AK85;B2R7T8;B1AK88;B4DWA6;P47756 B1AK87 67 80 CAPZB F-actin-capping protein subunit beta yes no 2 0.0088141 44.612 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15052 814 15458 39925 62653 62653 650 1 YDPSLTFSENVDLTEPIISR APCTVIAAANPIGGRYDPSLTFSENVDLTE TFSENVDLTEPIISRFDILCVVRDTVDPVQ R Y D S R F 0 1 1 2 0 0 2 0 0 2 2 0 0 1 2 3 2 0 1 1 0 0 20 0 2295.1271 B4DSV5;B3KXZ4;H0Y8E6;P49736;Q9BWF4 B4DSV5 507 526 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 1.3974E-06 74.678 2 2.162 2.1994 2.5565 2 Median 2.162 2.1994 2.5565 2 0 Median NaN NaN NaN 0 0 Median 23617000 8890400 14727000 23617000 8890400 14727000 0 0 0 15053 955 15459 39926;39927 62654;62655;62656;62657 62655 4 YDPTIEDFYR SALTVQFVTGTFIEKYDPTIEDFYRKEIEV TFIEKYDPTIEDFYRKEIEVDSSPSVLEIL K Y D Y R K 0 1 0 2 0 0 1 0 0 1 0 0 0 1 1 0 1 0 2 0 0 0 10 0 1317.5877 Q9Y3L5;F6U784;Q5JQ44;P61225;P10114 Q9Y3L5 32 41 RAP2C;RAP2A;DKFZp547A0616;RAP2B Ras-related protein Rap-2c;Ras-related protein Rap-2b;Ras-related protein Rap-2a yes no 2 0.045382 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15054 2138 15460 39928 62658 62658 1 YDPTIEDSYR SALTVQFVQGIFVEKYDPTIEDSYRKQVEV IFVEKYDPTIEDSYRKQVEVDAQQCMLEIL K Y D Y R K 0 1 0 2 0 0 1 0 0 1 0 0 0 0 1 1 1 0 2 0 0 0 10 0 1257.5513 A0A024RB87;P61224;F5H6R7;F5H004;F5GX62;Q9BXV4;E7ESV4;F5H7Y6;Q5U0C3;A8KAH9;P62834;F5H4H0;F5GYH7;F5H077;F5GWU8;F5H491;F5H0B7;F5H500;A0A075B6Q0;F5GYB5;A0A0J9YXB3;A6NIZ1 A0A024RB87 32 41 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 2 0.00038819 87.913 1 1.8339 1.8069 NaN 1 Median 1.8339 1.8069 NaN 1 0 Median NaN NaN NaN 0 0 Median 14626000 5278000 9348500 14626000 5278000 9348500 0 0 0 15055 329 15461 39929 62659 62659 1 YDPTIEDSYRK SALTVQFVQGIFVEKYDPTIEDSYRKQVEV FVEKYDPTIEDSYRKQVEVDAQQCMLEILD K Y D R K Q 0 1 0 2 0 0 1 0 0 1 0 1 0 0 1 1 1 0 2 0 0 0 11 1 1385.6463 A0A024RB87;P61224;F5H6R7;F5H004;F5GX62;Q9BXV4;E7ESV4;F5H7Y6;Q5U0C3;A8KAH9;P62834;F5H4H0;F5GYH7;F5H077;F5GWU8;F5H491;F5H0B7;F5H500;A0A075B6Q0;F5GYB5 A0A024RB87 32 42 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A yes no 2 0.0018407 70.1 2 1.9416 2.1622 2.4622 2 Median 1.9416 2.1622 2.4622 2 0 Median NaN NaN NaN 0 0 Median 32324000 11874000 20450000 32324000 11874000 20450000 0 0 0 15056 329 15462 39930;39931 62660;62661;62662 62660 3 YDPVWMTVTR VGIDSDGWVRDVTQRYDPVWMTVTRKCRVD DVTQRYDPVWMTVTRKCRVDAEWWAETLRP R Y D T R K 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 2 1 1 2 0 0 10 0 1266.6067 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPJ1;D2CPJ3;D2CPJ4;D2CPJ5;D2CPI8 A0A024R2M8 585 594 XPC DNA repair protein complementing XP-C cells no no 2 0.019087 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15057 118;1184 15463 39932 62663 62663 101 1 YDSLLEQGLVEAALVSK KPENKARRNRKRSIKYDSLLEQGLVEAALV SLLEQGLVEAALVSKISSPSDKKIPAKKES K Y D S K I 2 0 0 1 0 1 2 1 0 0 4 1 0 0 0 2 0 0 1 2 0 0 17 0 1833.9724 O96028;Q05CW4;D6R9V2;D6RIS1 O96028 175 191 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 3.2734E-18 133.15 2 0.94291 0.97254 11.994 2 Median 0.94291 0.97254 11.994 2 0 Median NaN NaN NaN 0 0 Median 43276000 22350000 20926000 43276000 22350000 20926000 0 0 0 15058 1435 15464 39933;39934 62664;62665;62666;62667;62668 62667 5 YDTALNLLK SDFCLKLEEGLVNNKYDTALNLLKESGPSG GLVNNKYDTALNLLKESGPSGIETELRSLS K Y D L K E 1 0 1 1 0 0 0 0 0 0 3 1 0 0 0 0 1 0 1 0 0 0 9 0 1049.5757 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 784 792 WDR36 WD repeat-containing protein 36 yes no 2 0.00014023 101.33 3 2 1.379 1.1138 5.2429 3 Median 0.91945 1.0288 NaN 1 0 Median 1.3953 1.1248 1.3905 2 0 Median 153840000 50608000 103230000 132430000 41521000 90904000 21414000 9087100 12326000 15059 486 15465 39935;39936;39937;39938;39939 62669;62670;62671;62672;62673;62674;62675;62676;62677 62669 9 YDTDFYILDK STPNEKLLGHLVKEKYDTDFYILDKYPLAV LVKEKYDTDFYILDKYPLAVRPFYTMPDPR K Y D D K Y 0 0 0 3 0 0 0 0 0 1 1 1 0 1 0 0 1 0 2 0 0 0 10 0 1291.5972 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 351 360 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.00045292 86.624 3 1.2424 1.2518 NaN 1 Median 1.2424 1.2518 NaN 1 0 Median NaN NaN NaN 0 0 Median 18914000 6475600 12438000 18914000 6475600 12438000 0 0 0 15060 610 15466 39940;39941;39942 62678;62679;62680;62681 62681 4 YDTVLDILR CNSMVLFDHVGCLKKYDTVLDILRDFFELR VGCLKKYDTVLDILRDFFELRLKYYGLRKE K Y D L R D 0 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 9 0 1106.5972 P11388 P11388 1012 1020 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00028235 103.56 3 2 0.99013 0.95446 29.053 4 Median 0.71144 0.79213 8.648 2 0 Median 1.4906 1.2465 20.041 2 0 Median 137550000 71514000 66035000 100770000 56937000 43828000 36784000 14577000 22207000 15061 1471 15467 39943;39944;39945;39946;39947 62682;62683;62684;62685;62686;62687;62688;62689 62689 8 YDVSEFCSYIK LRHDPDLHMHQGYDKYDVSEFCSYIKSSSS GYDKYDVSEFCSYIKSSSSLGNATSDEDPN K Y D I K S 0 0 0 1 1 0 1 0 0 1 0 1 0 1 0 2 0 0 2 1 0 0 11 0 1409.6173 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 639 649 CDCA2 Cell division cycle-associated protein 2 yes no 2 0.0004486 77.662 1 2 1.4848 1.1747 63.739 3 Median 0.42177 0.42259 NaN 1 0 Median 1.5698 1.2651 10.481 2 0 Median 15823000 6651800 9170700 5570300 3037900 2532400 10252000 3613900 6638400 15062 1233 15468 39948;39949;39950 62690;62691;62692;62693 62690 4 YDVYLINPQGK TRKLKQRKSGRSAGKYDVYLINPQGKAFRS SAGKYDVYLINPQGKAFRSKVELIAYFEKV K Y D G K A 0 0 1 1 0 1 0 1 0 1 1 1 0 0 1 0 0 0 2 1 0 0 11 0 1308.6714 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;I6LM39;A0A087WVW7;B5MCB4;A0A0S2Z401;A0A0D9SFX7;D5L9I4;A0A0S2Z3U3 A0A140VKC4 132 142 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.00046852 76.1 1 2 0.62016 0.52865 13.649 3 Median 0.61552 0.63857 NaN 1 0 Median 0.6495 0.50888 5.3878 2 0 Median 20112000 11998000 8114200 12564000 7425800 5137900 7548300 4572000 2976300 15063 623 15469 39951;39952;39953 62694;62695;62696;62697;62698 62694 5 YDWDLLAAR ITWNRKKLGEFFQTKYDWDLLAARSIWAFG EFFQTKYDWDLLAARSIWAFGPDATGPNIL K Y D A R S 2 1 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 9 0 1121.5506 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2;K7EP67;K7EJ74 B4DZB1 673 681 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0055856 66.351 1 2 0.82938 0.75946 2.5917 3 Plateau 0.75477 0.75946 NaN 1 0 Median 0.84717 0.73785 2.8069 2 0 Median 12712000 6452500 6259500 9333100 4713600 4619500 3379000 1739000 1640000 15064 794 15470 39954;39955;39956 62699;62700;62701 62699 3 YDYNSGEELESYK KEFLVAGGEDFKLYKYDYNSGEELESYKGH YKYDYNSGEELESYKGHFGPIHCVRFSPDG K Y D Y K G 0 0 1 1 0 0 3 1 0 0 1 1 0 0 0 2 0 0 3 0 0 0 13 0 1595.6627 Q9Y3F4;B0AZV0;H0YH33 Q9Y3F4 250 262 STRAP Serine-threonine kinase receptor-associated protein yes no 2 1.009E-18 141.89 2 2 3.2416 3.4271 21.988 4 Linear 3.2842 3.276 7.1663 2 0 Median 2.9371 2.3417 16.48 2 0 Median 61344000 15270000 46073000 52603000 12946000 39657000 8740300 2324400 6415900 15065 2136 15471 39957;39958;39959;39960 62702;62703;62704;62705;62706;62707;62708 62705 7 YEAAGTLVTLSSAPTAIK RCIYNLLQSSSPAVKYEAAGTLVTLSSAPT AGTLVTLSSAPTAIKAAAQCYIDLIIKESD K Y E I K A 4 0 0 0 0 0 1 1 0 1 2 1 0 0 1 2 3 0 1 1 0 0 18 0 1791.9618 P53618;E9PP73 P53618 262 279 COPB1 Coatomer subunit beta yes no 2 0.0070193 47.621 1 2 1.5132 1.5161 48.52 3 Plateau 1.5132 1.5161 NaN 1 0 Median 0.81453 0.65689 6.6977 2 0 Median 23884000 11023000 12861000 13886000 6030900 7855200 9997500 4991700 5005800 15066 1606 15472 39961;39962;39963 62709;62710;62711;62712 62709 3 YEAFLQR ENLRVRRAGFAYRRKYEAFLQRYKSLCPET AGFAYRRKYEAFLQRYKSLCPETWPTWAGR K Y E Q R Y 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 7 0 925.46577 F5H6E2;B7Z3E5;O00159;B7Z9C0;A1L180;D3DTH7 F5H6E2 644 650 MYO1C Unconventional myosin-Ic no no 2 0.02696 83.801 1 1.2573 1.2803 NaN 1 Median 1.2573 1.2803 NaN 1 0 Median NaN NaN NaN 0 0 Median 27235000 13289000 13946000 27235000 13289000 13946000 0 0 0 15067 1088;1189 15473 39964 62713 62713 1 YEAIQLTFK YKSIMELMNVLELRKYEAIQLTFKQVSKNF VLELRKYEAIQLTFKQVSKNFSEVFQKLVP K Y E F K Q 1 0 0 0 0 1 1 0 0 1 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1111.5914 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 1026 1034 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0083009 65.305 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15068 803 15474 39965 62714 62714 1 YEAIYPETAAILGYCR YKNHPLYALKRHLLKYEAIYPETAAILGYC EAIYPETAAILGYCRGEAVYSRDCVHTLHS K Y E C R G 3 1 0 0 1 0 2 1 0 2 1 0 0 0 1 0 1 0 3 0 0 0 16 0 1888.9029 A0A024R2M8;X5DRB1;D9I4E1;Q01831;A8K146;D2CPK7;D2CPK0;D2CPI8 A0A024R2M8 656 671 XPC DNA repair protein complementing XP-C cells no no 2 8.3162E-05 80.871 2 1.0537 0.87709 1.4165 2 Median NaN NaN NaN 0 0 Median 1.0537 0.87709 1.4165 2 0 Median 36915000 16707000 20209000 0 0 0 36915000 16707000 20209000 15069 118;1184 15475 39966;39967 62715;62716;62717 62716 3 YEALQTFAR ENSSMRLELDALRSKYEALQTFARTVARGP DALRSKYEALQTFARTVARGPVAPSKVATT K Y E A R T 2 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 9 0 1097.5506 A0A024R804;A8WFP5;O60675;A0A024R8X1;O15525 A0A024R804 111 119 MAFK;hCG_1991559;MAFG Transcription factor MafK;Transcription factor MafG no no 2 1.1693E-06 136.8 2 2 1.6485 1.5897 7.6928 4 Median 1.3906 1.5092 5.3779 2 0 Median 1.9943 1.6798 5.819 2 0 Median 98557000 39264000 59292000 89004000 36175000 52829000 9552800 3089300 6463500 15070 239;262 15476 39968;39969;39970;39971 62718;62719;62720;62721;62722;62723;62724;62725;62726 62718 9 YEDAYQYQNIFGPLVK EKPGVDEEPQHVLLRYEDAYQYQNIFGPLV EDAYQYQNIFGPLVKLEADYDKKLKESQTQ R Y E V K L 1 0 1 1 0 2 1 1 0 1 1 1 0 1 1 0 0 0 3 1 0 0 16 0 1946.9414 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 296 311 UPF1 Regulator of nonsense transcripts 1 yes no 2 1.1725E-12 112.13 2 2 2.2974 2.2431 77.04 3 Plateau 2.5576 2.5885 NaN 1 0 Median 0.85424 0.68845 13.312 2 0 Median 22310000 5574000 16736000 15503000 2286000 13217000 6806700 3288000 3518700 15071 231 15477 39972;39973;39974;39975 62727;62728;62729;62730;62731 62729 5 YEDEINRR GLRTMQDVVEDFKNKYEDEINRRTAAENEF VEDFKNKYEDEINRRTAAENEFVVLKKDVD K Y E R R T 0 2 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 8 1 1093.5152 CON__P08729 CON__P08729 180 187 no no 2;3 3.5387E-06 147.52 2 0.8605 0.93591 5.7113 2 Median 0.8605 0.93591 5.7113 2 0 Median NaN NaN NaN 0 0 Median 115250000 61030000 54223000 115250000 61030000 54223000 0 0 0 + 15072 1158 15478 39976;39977 62732;62733;62734;62735 62735 4 YEDGIALLR LAPCRLDCYEGREQKYEDGIALLRNALANQ EGREQKYEDGIALLRNALANQSDCVLHRIL K Y E L R N 1 1 0 1 0 0 1 1 0 1 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1048.5553 H0YIW2;B3KMP2;Q2M2R1;Q4KMX6;A8KAQ7;A5D8X2;A0A024RBJ3;Q9UJX3 H0YIW2 42 50 ANAPC7 Anaphase-promoting complex subunit 7 yes no 2 0.0016071 83.206 1 2.004 2.0827 NaN 1 Median 2.004 2.0827 NaN 1 0 Median NaN NaN NaN 0 0 Median 5481200 2125300 3355900 5481200 2125300 3355900 0 0 0 15073 341 15479 39978 62736 62736 1 YEDGIEVNQEIVVITTK AICYGAKIMLPGVLRYEDGIEVNQEIVVIT DGIEVNQEIVVITTKGEAICMAIALMTTAV R Y E T K G 0 0 1 1 0 1 3 1 0 3 0 1 0 0 0 0 2 0 1 3 0 0 17 0 1948.9993 O60832;H7C2Q2 O60832 323 339 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.011389 30.874 2 0.68441 0.54467 8.1108 2 Median NaN NaN NaN 0 0 Median 0.68441 0.54467 8.1108 2 0 Median 24896000 15257000 9638900 0 0 0 24896000 15257000 9638900 15074 1398 15480 39979;39980 62737;62738 62737 2 YEDICPSTHNMDVPNIK AKVHLVGIDIFTGKKYEDICPSTHNMDVPN DICPSTHNMDVPNIKRNDFQLIGIQDGYLS K Y E I K R 0 0 2 2 1 0 1 0 1 2 0 1 1 0 2 1 1 0 1 1 0 0 17 0 2031.903 I3L397;I3L504;P63241;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 69 85 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like yes no 3 4.9704E-05 50.079 1 4.3056 4.2828 NaN 1 Median 4.3056 4.2828 NaN 1 0 Median NaN NaN NaN 0 0 Median 9605200 2742600 6862700 9605200 2742600 6862700 0 0 0 15075 1322 15481 39981 62739 62739 1000 1 YEDYDYR RDSYYDRGYDRGYDRYEDYDYRYRRRSPSP GYDRGYDRYEDYDYRYRRRSPSPYYSRYRS R Y E Y R Y 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 7 0 1022.3981 Q549U1;Q13595 Q549U1 249 255 HSU53209;TRA2A Transformer-2 protein homolog alpha yes no 2 0.020239 94.262 2 1.2545 1.3161 12.895 2 Median 1.2545 1.3161 12.895 2 0 Median NaN NaN NaN 0 0 Median 60739000 27999000 32740000 60739000 27999000 32740000 0 0 0 15076 1716 15482 39982;39983 62740;62741;62742;62743 62741 4 YEEIVK VNKMDSTEPPYSQKRYEEIVKEVSTYIKKI TEPPYSQKRYEEIVKEVSTYIKKIGYNPDT R Y E V K E 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 6 0 779.40652 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q96RE1;Q53GA1;Q8IUB0;B4DV42;A0A087WVQ9;Q504Z0;Q53G89;Q9NZS6;B4E2C5;A0A087WV01;Q9H2I7;Q16577;A9X7H1;Q53HR1 Q6IPT9 167 172 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 no no 2 0.041831 106.29 1 2.5484 3.0122 NaN 1 Median 2.5484 3.0122 NaN 1 0 Median NaN NaN NaN 0 0 Median 1459200000 441940000 1017200000 1459200000 441940000 1017200000 0 0 0 15077 1658;1790 15483 39984 62744 62744 1 YEELQITAGR AQKSKAEAESLYQSKYEELQITAGRHGDSV LYQSKYEELQITAGRHGDSVRNSKIEISEL K Y E G R H 1 1 0 0 0 1 2 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1178.5932 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 377 386 KRT1 Keratin, type II cytoskeletal 1 no no 2 2.7888E-51 185.6 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1487700000 1487700000 0 1148200000 1148200000 0 339450000 339450000 0 + 15078 1308;1309 15484 39985;39986;39987 62745;62746;62747 62747 3 YEELQQTAGR ANRSRTEAESWYQTKYEELQQTAGRHGDDL WYQTKYEELQQTAGRHGDDLRNTKHEISEM K Y E G R H 1 1 0 0 0 2 2 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1193.5677 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;H0YIN9 CON__P13647 365 374 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.052955 46.001 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11787000 11787000 0 0 0 0 11787000 11787000 0 + 15079 1162 15485 39988 62748 62748 1 YEELQSLAGK ANRSRAEAESMYQIKYEELQSLAGKHGDDL MYQIKYEELQSLAGKHGDDLRRTKTEISEM K Y E G K H 1 0 0 0 0 1 2 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 10 0 1136.5714 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 286 295 KRT8 Keratin, type II cytoskeletal 8 yes no 2 5.461E-12 144.09 2 1 1.1058 1.3034 10.295 3 Median 1.0988 1.2852 1.9842 2 0 Median 1.9144 1.5336 NaN 1 0 Median 576530000 270910000 305620000 554810000 263470000 291340000 21719000 7439400 14280000 + 15080 1156 15486 39989;39990;39991 62749;62750;62751;62752;62753;62754;62755;62756 62754 8 YEELQVTAGK AQRSRAEAEAWYQTKYEELQVTAGKHGDNL WYQTKYEELQVTAGKHGDNLRDTKNEIAEL K Y E G K H 1 0 0 0 0 1 2 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1136.5714 CON__Q5XKE5;Q5XKE5 CON__Q5XKE5 341 350 KRT79 Keratin, type II cytoskeletal 79 no no 2 4.0245E-06 109.71 2 1.9178 1.5467 1.207 2 Median NaN NaN NaN 0 0 Median 1.9178 1.5467 1.207 2 0 Median 49055000 17248000 31807000 0 0 0 49055000 17248000 31807000 + 15081 1175 15487 39992;39993 62757;62758;62759 62759 3 YEELQVTAGR AQRSRAEAESWYQTKYEELQVTAGRHGDDL WYQTKYEELQVTAGRHGDDLRNTKQEIAEI K Y E G R H 1 1 0 0 0 1 2 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1164.5775 CON__O95678;O95678;CON__Q8BGZ7;B2R853;B4DRR0;B4DRY0;CON__P48668;CON__P02538;A8K2I0;A0A0S2Z428;P48668;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4 B2R853 360 369 KRT75;KRT6C;KRT6A Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 6A no no 2 1.7789E-15 133.13 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 131130000 131130000 0 116000000 116000000 0 15124000 15124000 0 + 15082 859;1154;1147;1180 15488 39994;39995;39996;39997 62760;62761;62762;62763 62760 4 YEESLADSDNK ACTQLVDNLVEHILKYEESLADSDNKGVNS HILKYEESLADSDNKGVNSGRLVACITTLF K Y E N K G 1 0 1 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 11 0 1269.5361 Q6IEH8;Q6KC79 Q6IEH8 1985 1995 NIPBL Nipped-B-like protein yes no 2 0.00038057 83 1 0.60355 0.61264 NaN 1 Median 0.60355 0.61264 NaN 1 0 Median NaN NaN NaN 0 0 Median 6122100 3927800 2194300 6122100 3927800 2194300 0 0 0 15083 1843 15489 39998 62764;62765 62764 2 YEGNVTEETR KEMNLSQRVVSYQIRYEGNVTEETRIKFMT SYQIRYEGNVTEETRIKFMTDGVLLKEIQK R Y E T R I 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 2 0 1 1 0 0 10 0 1196.5309 Q8IY37;F5H3Y4 Q8IY37 335 344 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 7.3668E-06 107.21 1 1.1756 1.1969 NaN 1 Median 1.1756 1.1969 NaN 1 0 Median NaN NaN NaN 0 0 Median 7097500 3417000 3680400 7097500 3417000 3680400 0 0 0 15084 1897 15490 39999 62766 62766 1 YEHVLEALNDYK RLHPGELADTPKSERYEHVLEALNDYKTMF SERYEHVLEALNDYKTMFMSGKEIKKKKHL R Y E Y K T 1 0 1 1 0 0 2 0 1 0 2 1 0 0 0 0 0 0 2 1 0 0 12 0 1492.7198 Q9Y483;Q96G26;B4DZG1;B4DZ69 Q9Y483 317 328 MTF2 Metal-response element-binding transcription factor 2 yes no 3 0.017137 31.708 1 1.1181 1.1713 NaN 1 Median 1.1181 1.1713 NaN 1 0 Median NaN NaN NaN 0 0 Median 19451000 9768100 9682900 19451000 9768100 9682900 0 0 0 15085 2143 15491 40000 62767 62767 1 YEIAVETEMKK GLLNLIRTMPGKKSKYEIAVETEMKKESKL KKSKYEIAVETEMKKESKLERTPQKNVQGK K Y E K K E 1 0 0 0 0 0 3 0 0 1 0 2 1 0 0 0 1 0 1 1 0 0 11 1 1339.6694 P35251;Q14756 P35251 489 499 RFC1;LLDBP Replication factor C subunit 1 yes no 2 0.0033248 63.283 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4986800 4986800 0 4986800 4986800 0 0 0 0 15086 1542 15492 40001;40002 62768;62769;62770 62768 1300 3 YEILQSVDDAAIVIK ADNLAIQLAAVTEDKYEILQSVDDAAIVIK YEILQSVDDAAIVIKNTKEPPLSLTIHLTS K Y E I K N 2 0 0 2 0 1 1 0 0 3 1 1 0 0 0 1 0 0 1 2 0 0 15 0 1675.9033 F4ZW64;F4ZW65;A0A024R7C7;F4ZW66;Q12906;Q59GP7;K7EKJ9;K7EKY0;K7ER69;K7EQR9 F4ZW64 144 158 ILF3 Interleukin enhancer-binding factor 3 yes no 2 6.6387E-05 84.479 2 1.3889 1.3799 22.032 2 Median 1.3889 1.3799 22.032 2 0 Median NaN NaN NaN 0 0 Median 14801000 7380600 7420800 14801000 7380600 7420800 0 0 0 15087 220 15493 40003;40004 62771;62772;62773 62773 2 YEILTPNSIPK QGFPNRVVFQEFRQRYEILTPNSIPKGFMD FRQRYEILTPNSIPKGFMDGKQACVLMIKA R Y E P K G 0 0 1 0 0 0 1 0 0 2 1 1 0 0 2 1 1 0 1 0 0 0 11 0 1273.6918 A0A024R1N1;P35579;A0A0U4BW16;Q86XU5;B4E3S1 A0A024R1N1 721 731 MYH9 Myosin-9 yes no 2 0.0023656 75.294 2 2 1.7419 1.9608 NaN 1 Median 1.7419 1.9608 NaN 1 0 Median NaN NaN NaN 0 0 Median 100200000 15419000 84784000 88639000 15419000 73219000 11565000 0 11565000 15088 81 15494 40005;40006;40007;40008 62774;62775;62776;62777;62778 62774 5 YEISSVPTFLFFK FVKLEAEGVPEVSEKYEISSVPTFLFFKNS EKYEISSVPTFLFFKNSQKIDRLDGAHAPE K Y E F K N 0 0 0 0 0 0 1 0 0 1 1 1 0 3 1 2 1 0 1 1 0 0 13 0 1576.8177 A0A140VJK1;O76003 A0A140VJK1 80 92 GLRX3 Glutaredoxin-3 yes no 2 0.0047052 60.434 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13556000 0 13556000 13556000 0 13556000 0 0 0 15089 602 15495 40009;40010 62779;62780 62779 2 YEITEQR PRHQEGEIFDTEKEKYEITEQRKIDQKAVD IFDTEKEKYEITEQRKIDQKAVDSQILPKI K Y E Q R K 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 7 0 937.45051 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 240 246 RPL6 60S ribosomal protein L6 yes no 2 0.0001146 132.29 3 1 0.92109 1.0752 NaN 1 Median 0.92109 1.0752 NaN 1 0 Median NaN NaN NaN 0 0 Median 776790000 526240000 250550000 763930000 513380000 250550000 12855000 12855000 0 15090 342 15496 40011;40012;40013;40014 62781;62782;62783;62784;62785 62781 5 YEITEQRK PRHQEGEIFDTEKEKYEITEQRKIDQKAVD FDTEKEKYEITEQRKIDQKAVDSQILPKIK K Y E R K I 0 1 0 0 0 1 2 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 8 1 1065.5455 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 240 247 RPL6 60S ribosomal protein L6 yes no 2 0.003641 98.299 3 0.99562 1.0935 NaN 1 Median 0.99562 1.0935 NaN 1 0 Median NaN NaN NaN 0 0 Median 19942000 3216800 16726000 19942000 3216800 16726000 0 0 0 15091 342 15497 40015;40016;40017 62786;62787;62788;62789 62786 4 YELGRPAANTK RKTGGKRKPYHKKRKYELGRPAANTKIGPR KKRKYELGRPAANTKIGPRRIHTVRVRGGN K Y E T K I 2 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 1 0 1 0 0 0 11 1 1218.6357 Q5JR94;P62241;Q5JR95 Q5JR94 27 37 RPS8 40S ribosomal protein S8 yes no 2;3 4.3862E-22 175.15 4 4 0.8376 0.92585 8.346 8 Linear 0.74409 0.89603 5.9138 4 0 Median 0.89791 0.80415 3.9132 4 0 Median 2664900000 1481600000 1183400000 2182600000 1235300000 947320000 482340000 246290000 236050000 15092 1635 15498 40018;40019;40020;40021;40022;40023;40024;40025 62790;62791;62792;62793;62794;62795;62796;62797;62798;62799;62800;62801;62802;62803;62804 62790 15 YELISETGGSHDK KNPVMELNEKRRGLKYELISETGGSHDKRF LKYELISETGGSHDKRFVMEVEVDGQKFQG K Y E D K R 0 0 0 1 0 0 2 2 1 1 1 1 0 0 0 2 1 0 1 0 0 0 13 0 1434.6627 F4ZW64;F4ZW65;A0A024R7C7;F4ZW66;Q12906;A8K590;B4DFG4;B4DDF3;A0A0S2Z5K8;V9HWK4;Q96SI9 F4ZW64 541 553 ILF3;HEL162;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein yes no 2 0.013979 37.681 1 0.88739 0.71116 NaN 1 Median NaN NaN NaN 0 0 Median 0.88739 0.71116 NaN 1 0 Median 2874000 1720400 1153600 0 0 0 2874000 1720400 1153600 15093 220 15499 40026 62805;62806 62806 2 YELLSEENK VTDRHIWRSALESGRYELLSEENKENGIIK ALESGRYELLSEENKENGIIKTVNEDVEEM R Y E N K E 0 0 1 0 0 0 3 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1123.5397 D3DS96;Q9NRL2;Q59G54 D3DS96 1014 1022 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.04947 47.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1689300 0 1689300 0 0 0 1689300 0 1689300 15094 1187 15500 40027 62807 62807 1 YELQLANPK WNYNFMGVRHDPNMKYELQLANPKEFYHEV HDPNMKYELQLANPKEFYHEVHRPSHFLNF K Y E P K E 1 0 1 0 0 1 1 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 9 0 1074.571 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2294 2302 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 1.76E-06 136.16 2 1 0.90357 0.95347 17.583 3 Plateau 0.90357 0.94198 6.9008 2 0 Median 0.86674 0.70303 NaN 1 0 Median 64631000 29936000 34695000 61905000 28463000 33442000 2725700 1473100 1252600 15095 1854 15501 40028;40029;40030 62808;62809;62810;62811;62812;62813 62811 6 YELVTELNDSR LNELEKICEILQAEKYELVTELNDSRSECI QAEKYELVTELNDSRSECITATRKMAEEVG K Y E S R S 0 1 1 1 0 0 2 0 0 0 2 0 0 0 0 1 1 0 1 1 0 0 11 0 1337.6463 P49454 P49454 1315 1325 CENPF Centromere protein F yes yes 2 0.013619 56.404 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15096 1581 15502 40031;40032 62814;62815 62814 2 YENEVALR QIDNARLAADDFRLKYENEVALRQSVEADI ADDFRLKYENEVALRQSVEADINGLRRVLD K Y E L R Q 1 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 992.49271 CON__P13645;P13645 CON__P13645 238 245 KRT10 Keratin, type I cytoskeletal 10 yes no 2 0.0032335 100.45 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 563710000 563710000 0 395940000 395940000 0 167770000 167770000 0 + 15097 1161 15503 40033;40034;40035 62816;62817;62818;62819;62820;62821;62822 62821 7 YESGDHVAVYPANDSALVNQLGK HLMHLELDISDSKIRYESGDHVAVYPANDS VYPANDSALVNQLGKILGADLDVVMSLNNL R Y E G K I 3 0 2 2 0 1 1 2 1 0 2 1 0 0 1 2 0 0 2 3 0 0 23 0 2446.1765 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;E7EMD0;B4DDH3;B4DKM8;B4E305 B2R6E5 317 339 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 3 0.0010383 59.918 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10526000 10526000 0 10526000 10526000 0 0 0 0 15098 719 15504 40036;40037 62823;62824 62824 2 YETELAMR QIDNARLAADDFRVKYETELAMRQSVENDI ADDFRVKYETELAMRQSVENDIHGLRKVID K Y E M R Q 1 1 0 0 0 0 2 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 8 0 1011.4695 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 168 175 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.00077068 107.59 4 1.4362 1.6556 3.1131 4 Median 1.4362 1.6556 3.1131 4 0 Median NaN NaN NaN 0 0 Median 809920000 328620000 481300000 809920000 328620000 481300000 0 0 0 + 15099 316;1155 15505 40038;40039;40040;40041 62825;62826;62827;62828;62829 62828 239 5 YETELNLR QIDNARLAADDFRTKYETELNLRMSVEADI ADDFRTKYETELNLRMSVEADINGLRRVLD K Y E L R M 0 1 1 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 8 0 1036.5189 CON__P02533;P02533;CON__Q6IFX2 CON__P02533 204 211 KRT14 Keratin, type I cytoskeletal 14 yes no 2 0.0033611 97.033 2 1 0.072254 0.083313 NaN 1 Median 0.072254 0.083313 NaN 1 0 Median NaN NaN NaN 0 0 Median 102120000 97535000 4585400 87601000 83015000 4585400 14520000 14520000 0 + 15100 1150 15506 40042;40043;40044 62830;62831;62832 62831 3 YETIHLTEEPTK SESEEKLDQKEDGSKYETIHLTEEPTKLMH GSKYETIHLTEEPTKLMHNASDSEVDQDDV K Y E T K L 0 0 0 0 0 0 3 0 1 1 1 1 0 0 1 0 3 0 1 0 0 0 12 0 1459.7195 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 936 947 ADNP Activity-dependent neuroprotector homeobox protein yes no 2;3 0.0012048 80.706 3 2 0.63872 0.64383 NaN 1 Median 0.63872 0.64383 NaN 1 0 Median NaN NaN NaN 0 0 Median 53600000 13779000 39821000 49707000 12576000 37131000 3893300 1203200 2690100 15101 878 15507 40045;40046;40047;40048;40049 62833;62834;62835;62836;62837;62838;62839 62838 7 YETVIMPVFGIATPFHIATIK KEPHIREMKIYIDKKYETVIMPVFGIATPF PVFGIATPFHIATIKNISMSVEGDYTYLRI K Y E I K N 2 0 0 0 0 0 1 1 1 4 0 1 1 2 2 0 3 0 1 2 0 0 21 0 2347.265 Q9Y5B9 Q9Y5B9 535 555 SUPT16H FACT complex subunit SPT16 yes yes 3 1.0825E-08 76.768 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11528000 11528000 0 11528000 11528000 0 0 0 0 15102 2148 15508;15509 40050;40051 62840;62841;62842 62842 1993 3 YEVGLPTLCCLK MELREQELMKIVGIKYEVGLPTLCCLKLAF GIKYEVGLPTLCCLKLAFLDPDTGKLTGGS K Y E L K L 0 0 0 0 2 0 1 1 0 0 3 1 0 0 1 0 1 0 1 1 0 0 12 0 1451.7153 Q8WWQ0 Q8WWQ0 1011 1022 PHIP PH-interacting protein yes yes 2 4.1893E-05 96.342 2 2 1.3972 1.1219 3.6073 2 Median NaN NaN NaN 0 0 Median 1.3972 1.1219 3.6073 2 0 Median 69144000 44338000 24807000 27540000 27540000 0 41605000 16798000 24807000 15103 1942 15510 40052;40053;40054;40055 62843;62844;62845;62846;62847;62848 62843 6 YEVLENK TLKNTKEIQRKAEEKYEVLENKMKNAEAER IQRKAEEKYEVLENKMKNAEAERERELKDA K Y E N K M 0 0 1 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 893.44945 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 773 779 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.012142 106.42 2 2 1.2656 1.2267 24.76 4 Median 0.8676 0.99006 0.57823 2 0 Median 1.8373 1.5201 0.60762 2 0 Median 399940000 208420000 191520000 323720000 180930000 142790000 76224000 27497000 48727000 15104 69 15511 40056;40057;40058;40059 62849;62850;62851;62852;62853;62854;62855;62856 62851 8 YEWDVAEAR ARQELKQRARYLAEKYEWDVAEARKIWCFG RYLAEKYEWDVAEARKIWCFGPDGTGPNIL K Y E A R K 2 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 9 0 1137.5091 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 639 647 EEF2 Elongation factor 2 yes no 2 0.0010561 90.601 2 1 2.6547 3.0117 29.325 3 Plateau 2.6547 2.9841 15.604 2 0 Median 2.2213 1.864 NaN 1 0 Median 113540000 29545000 84000000 108690000 28002000 80687000 4856200 1543200 3313000 15105 1478 15512 40060;40061;40062 62857;62858;62859;62860 62857 4 YFDPANGK AKKVEDMMKKLWGDRYFDPANGKFSKSATS KKLWGDRYFDPANGKFSKSATSPEGKKLPR R Y F G K F 1 0 1 1 0 0 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 0 8 0 910.41848 P13639;Q6PK56;B4DRE8;B4DMC6 P13639 265 272 EEF2 Elongation factor 2 yes no 2 0.001718 106.42 2 1 3.4842 3.938 42.159 3 Plateau 3.3996 3.7685 8.8055 2 0 Median 2.33 1.8303 NaN 1 0 Median 127130000 24036000 103100000 123990000 23193000 100790000 3145900 842110 2303800 15106 1478 15513 40063;40064;40065 62861;62862;62863;62864;62865 62863 5 YFEGVSPK YKLLSITVRNAKKIKYFEGVSPKSLKHSPE RNAKKIKYFEGVSPKSLKHSPEDPEKYSCF K Y F P K S 0 0 0 0 0 0 1 1 0 0 0 1 0 1 1 1 0 0 1 1 0 0 8 0 925.45453 P78527;B4DL41 P78527 682 689 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0087497 77.282 2 2 0.49206 0.47113 57.559 4 Median 0.70362 0.78896 8.1598 2 0 Median 0.36267 0.29222 2.7919 2 0 Median 188540000 106150000 82390000 169190000 92036000 77155000 19353000 14118000 5234800 15107 1665 15514 40066;40067;40068;40069 62866;62867;62868;62869;62870;62871 62868 6 YFEIQFSPGGEPDGGK NAKTVRNNNSSRFGKYFEIQFSPGGEPDGG FEIQFSPGGEPDGGKISNFLLEKSRVVMRN K Y F G K I 0 0 0 1 0 1 2 4 0 1 0 1 0 2 2 1 0 0 1 0 0 0 16 0 1726.7839 Q4KMR3;Q12965;H0YLJ4 Q4KMR3 173 188 MYO1E Unconventional myosin-Ie yes no 2 4.1375E-12 117.03 2 2 1.0161 1.0132 23.172 3 Median 0.97811 1.0046 1.1991 2 0 Median 1.8287 1.5003 NaN 1 0 Median 52759000 24923000 27836000 43496000 23550000 19946000 9262900 1372800 7890100 15108 1703 15515 40070;40071;40072;40073 62872;62873;62874;62875;62876 62874 5 YFEITDESPYVHYLNTFSSK TSIIYLCGKGDSSIRYFEITDESPYVHYLN DESPYVHYLNTFSSKEPQRGMGYMPKRGLD R Y F S K E 0 0 1 1 0 0 2 0 1 1 1 1 0 2 1 3 2 0 3 1 0 0 20 0 2439.1271 Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B4DMH3;B4E3S0;B7Z9V0 Q53G58 292 311 CORO1C Coronin;Coronin-1C yes no 3 2.7854E-13 104.06 2 3.2539 3.4647 6.3972 2 Median 3.2539 3.4647 6.3972 2 0 Median NaN NaN NaN 0 0 Median 70417000 16579000 53838000 70417000 16579000 53838000 0 0 0 15109 340 15516 40074;40075 62877;62878;62879 62879 3 YFGGCPVIK LVLMSATGDNERFSRYFGGCPVIKVPGFMY NERFSRYFGGCPVIKVPGFMYPVKEHYLED R Y F I K V 0 0 0 0 1 0 0 2 0 1 0 1 0 1 1 0 0 0 1 1 0 0 9 0 1039.5161 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 574 582 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.015684 54.549 2 1.1709 1.196 9.8811 2 Median 1.1709 1.196 9.8811 2 0 Median NaN NaN NaN 0 0 Median 30092000 13883000 16209000 30092000 13883000 16209000 0 0 0 15110 122 15517 40076;40077 62880;62881 62881 2 YFLASLDR GALHFRLGNLGEAKKYFLASLDRAKAEAEH NLGEAKKYFLASLDRAKAEAEHDEHYYNAI K Y F D R A 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 1 0 0 1 0 0 0 8 0 983.50763 A8K6X9;Q6PD62 A8K6X9 473 480 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.051374 43.246 2 1.7195 1.5062 5.7902 2 Median NaN NaN NaN 0 0 Median 1.7195 1.5062 5.7902 2 0 Median 2751900 1134200 1617800 0 0 0 2751900 1134200 1617800 15111 765 15518 40078;40079 62882;62883 62882 2 YFLVGAGAIGCELLK AVFGSDLQEKLGKQKYFLVGAGAIGCELLK YFLVGAGAIGCELLKNFAMIGLGCGEGGEI K Y F L K N 2 0 0 0 1 0 1 3 0 1 3 1 0 1 0 0 0 0 1 1 0 0 15 0 1609.8538 A0A024R1A3;P22314 A0A024R1A3 471 485 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.0043571 57.836 1 1 1.1813 0.97793 NaN 1 Median NaN NaN NaN 0 0 Median 1.1813 0.97793 NaN 1 0 Median 4093900 3221300 872620 2442600 2442600 0 1651300 778690 872620 15112 74 15519 40080;40081 62884;62885 62884 2 YFPTQALNFAFK GVLSFWRGNLANVIRYFPTQALNFAFKDKY VIRYFPTQALNFAFKDKYKQIFLGGVDKHT R Y F F K D 2 0 1 0 0 1 0 0 0 0 1 1 0 3 1 0 1 0 1 0 0 0 12 0 1445.7343 Q6I9V5;Q59EI9;P12236;A0A0S2Z359;V9GYG0;A8K787;A0A0S2Z3H3;P12235;Q9H0C2;Q59EP7 Q6I9V5 81 92 SLC25A6;SLC25A4;SLC25A31 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed no no 2 0.00018337 85.731 3 2 0.80069 0.75115 8.4559 3 Plateau 0.72694 0.7512 NaN 1 0 Median 0.80743 0.64897 0.59115 2 0 Median 49409000 26954000 22456000 35983000 18904000 17079000 13427000 8049600 5377100 15113 1474 15520 40082;40083;40084;40085;40086 62886;62887;62888;62889;62890;62891;62892;62893 62889 8 YFQFQEEGK AGMLKRNCFASVFEKYFQFQEEGKEGENRA ASVFEKYFQFQEEGKEGENRAVIHYRDDET K Y F G K E 0 0 0 0 0 2 2 1 0 0 0 1 0 2 0 0 0 0 1 0 0 0 9 0 1174.5295 Q9BXV5;Q53R19;O15144;A0A024R408 Q9BXV5 73 81 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 0.040745 49.554 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15114 1375 15521 40087 62894 62894 1 YFQIGTIVDNPADFYHSR PKRFYKKNDRDGFPKYFQIGTIVDNPADFY IGTIVDNPADFYHSRIPKKQRKRTIVEELL K Y F S R I 1 1 1 2 0 1 0 1 1 2 0 0 0 2 1 1 1 0 2 1 0 0 18 0 2142.0171 Q5QJE6 Q5QJE6 687 704 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 3 3.6329E-17 105.77 2 2 1.5605 1.5463 13.217 4 Median 1.228 1.3848 19.933 2 0 Median 1.7826 1.5463 2.2652 2 0 Median 366370000 156110000 210260000 228590000 105800000 122790000 137780000 50309000 87472000 15115 1813 15522 40088;40089;40090;40091 62895;62896;62897;62898;62899;62900;62901;62902 62902 8 YFQSPSR ASLRRSRSGSIKGSRYFQSPSRSRSRSRSI SGSIKGSRYFQSPSRSRSRSRSISRPRSSR R Y F S R S 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 2 0 0 1 0 0 0 7 0 883.41882 Q16629;H7BZZ6 Q16629 189 195 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2 0.012636 107.43 2 1.4816 1.4822 NaN 1 Median 1.4816 1.4822 NaN 1 0 Median NaN NaN NaN 0 0 Median 39095000 27471000 11624000 39095000 27471000 11624000 0 0 0 15116 1772 15523 40092;40093 62903;62904 62903 2 YFTVTCYSGYGDDEK GFDGEYQDDSLDLLRYFTVTCYSGYGDDEK YFTVTCYSGYGDDEKGFYTVYRNVFEMIAK R Y F E K G 0 0 0 2 1 0 1 2 0 0 0 1 0 1 0 1 2 0 3 1 0 0 15 0 1803.7298 Q5F1R6 Q5F1R6 91 105 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 0.018045 31.989 2 0.97654 0.79085 16.115 2 Median NaN NaN NaN 0 0 Median 0.97654 0.79085 16.115 2 0 Median 5130700 2547700 2583100 0 0 0 5130700 2547700 2583100 15117 1806 15524 40094;40095 62905;62906;62907 62907 3 YFVESCHPDVIQHLLQDPVIR TVSYGKVKLVLKHNRYFVESCHPDVIQHLL HPDVIQHLLQDPVIRECRLRNSEGEATELI R Y F I R E 0 1 0 2 1 2 1 0 2 2 2 0 0 1 2 1 0 0 1 3 0 0 21 0 2564.2846 G3V1S1;B3KTH1;B3KRG2;A8K359;P19447;Q53HW5;H7C309 G3V1S1 111 131 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 4 0.007223 27.055 1 0.46367 0.40462 NaN 1 Median NaN NaN NaN 0 0 Median 0.46367 0.40462 NaN 1 0 Median 2587000 1549300 1037700 0 0 0 2587000 1549300 1037700 15118 717 15525 40096 62908 62908 1 YGADALR KRKKNYPDPVSIIQKYGADALRLYLINSPV DPVSIIQKYGADALRLYLINSPVVRAENLR K Y G L R L 2 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 7 0 764.3817 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4 Q59G75 635 641 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.03394 63.148 1 1.3999 1.4433 NaN 1 Median 1.3999 1.4433 NaN 1 0 Median NaN NaN NaN 0 0 Median 24378000 9304100 15074000 24378000 9304100 15074000 0 0 0 15119 1561 15526 40097 62909;62910 62910 2 YGAEVISVLQK VLLQIDGVTEDKLEKYGAEVISVLQKYSEW KLEKYGAEVISVLQKYSEWTSPAEDSSPGI K Y G Q K Y 1 0 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 1 2 0 0 11 0 1205.6656 B2RAN0;P54132;H0YNU5;B7ZKN7;B7Z2X2;B7Z8C1 B2RAN0 1274 1284 BLM Bloom syndrome protein yes no 2 0.02478 68.893 2 1 0.66564 0.71445 28.33 3 Median 0.63537 0.65523 12.235 2 0 Median 1.291 1.0455 NaN 1 0 Median 32242000 21637000 10605000 29650000 20481000 9169000 2592000 1155600 1436300 15120 873 15527 40098;40099;40100 62911;62912;62913 62911 1 YGALVICETSEQK GAMQSPSLHKLVLGKYGALVICETSEQKTN GKYGALVICETSEQKTNLEDVGRRLGQHVV K Y G Q K T 1 0 0 0 1 1 2 1 0 1 1 1 0 0 0 1 1 0 1 1 0 0 13 0 1496.7181 E5KS95;P43897;B4DHY8 E5KS95 234 246 TSFM Elongation factor Ts, mitochondrial yes no 2 0.016064 50.194 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15121 1208 15528 40101 62914 62914 1 YGASLLHTYAGPSLLVLGPR VYLNESSVLHTLRQRYGASLLHTYAGPSLL LHTYAGPSLLVLGPRGAPAVYSEKVMHMFK R Y G P R G 2 1 0 0 0 0 0 3 1 0 5 0 0 0 2 2 1 0 2 1 0 0 20 0 2084.1419 A0A0D9SFK2;A0A024QZ63;Q92614;B4E0T8;H0YEV9 A0A0D9SFK2 429 448 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 3 0.039096 13.888 1 1.9068 1.6812 NaN 1 Median NaN NaN NaN 0 0 Median 1.9068 1.6812 NaN 1 0 Median 1405700 494570 911150 0 0 0 1405700 494570 911150 15122 12 15529 40102 62915 62915 1 YGCEGPSHGGLPGASSEK LVIVEQPKQRGFRFRYGCEGPSHGGLPGAS EGPSHGGLPGASSEKGRKTYPTVKICNYEG R Y G E K G 1 0 0 0 1 0 2 5 1 0 1 1 0 0 2 3 0 0 1 0 0 0 18 0 1788.7737 Q00653;A0A1P8C958;D3DR86 Q00653 55 72 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2;3 0.00025355 40.384 3 2 2.0175 2.4172 27.03 4 Linear 2.2274 2.2732 17.448 2 0 Median 1.8377 1.5352 18.618 2 0 Median 27675000 8042500 19632000 24277000 6715000 17562000 3398100 1327500 2070600 15123 1674 15530 40103;40104;40105;40106;40107 62916;62917;62918;62919;62920 62917 5 YGDGIQLTR DCLMRAELIVQPELKYGDGIQLTRSRELDE VQPELKYGDGIQLTRSRELDECFAQANDQM K Y G T R S 0 1 0 1 0 1 0 2 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1021.5193 P15924;Q4LE79;B4E2A0;Q6ZP16;G1UI31 P15924 95 103 DSP;DSP variant protein Desmoplakin yes no 2 0.001341 86.67 2 0.52499 0.54142 NaN 1 Median 0.52499 0.54142 NaN 1 0 Median NaN NaN NaN 0 0 Median 43481000 34155000 9325600 43481000 34155000 9325600 0 0 0 15124 1486 15531 40108;40109 62921;62922;62923 62921 3 YGDGPRPPK RPSAAGINLMIGSTRYGDGPRPPKMARYDN MIGSTRYGDGPRPPKMARYDNGSGYRRGGS R Y G P K M 0 1 0 1 0 0 0 2 0 0 0 1 0 0 3 0 0 0 1 0 0 0 9 1 985.49813 Q08211;B3KU66 Q08211 1155 1163 DHX9 ATP-dependent RNA helicase A yes no 2;3 0.00012148 94.302 3 1.2118 1.4577 7.3951 3 Median 1.2118 1.4577 7.3951 3 0 Median NaN NaN NaN 0 0 Median 163830000 72672000 91158000 163830000 72672000 91158000 0 0 0 15125 1691 15532 40110;40111;40112 62924;62925;62926;62927;62928 62928 5 YGDSLYR NLVDNVAKDYVRLMKYGDSLYRCKQLKRAA KDYVRLMKYGDSLYRCKQLKRAALGRMCTV K Y G Y R C 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 2 0 0 0 7 0 872.40283 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2;O60747;Q5T3R7 Q8N4P8 117 123 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.024839 89.673 2 1.1242 1.2873 2.775 2 Median 1.1242 1.2873 2.775 2 0 Median NaN NaN NaN 0 0 Median 269480000 122910000 146570000 269480000 122910000 146570000 0 0 0 15126 1183 15533 40113;40114 62929;62930;62931 62931 3 YGEPGEVFINK PADITEDEFKRLFAKYGEPGEVFINKGKGF LFAKYGEPGEVFINKGKGFGFIKLESRALA K Y G N K G 0 0 1 0 0 0 2 2 0 1 0 1 0 1 1 0 0 0 1 1 0 0 11 0 1251.6136 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 247 257 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.00015138 94.909 2 2 1.326 1.2419 41.062 4 Median 1.6208 1.7745 4.4222 2 0 Median 1.088 0.87341 3.7396 2 0 Median 100900000 38318000 62585000 91687000 33853000 57835000 9215500 4465700 4749800 15127 1510 15534 40115;40116;40117;40118 62932;62933;62934;62935;62936;62937 62934 6 YGEYFPGTGDLR AFYTTDRVMTVSFHKYGEYFPGTGDLRDIG FHKYGEYFPGTGDLRDIGAGKGKYYAVNYP K Y G L R D 0 1 0 1 0 0 1 3 0 0 1 0 0 1 1 0 1 0 2 0 0 0 12 0 1373.6252 Q6IT96;Q13547;B5BU61;B4DRG0;Q5TEE2;B4DSK9;B7Z3S4;Q92769;B3KUJ5 Q6IT96 201 212 HDAC1;HDAC2 Histone deacetylase;Histone deacetylase 1;Histone deacetylase 2 no no 2 0.00018487 88.948 2 2 1.114 1.1273 21.803 4 Median 0.79897 0.92756 2.4723 2 0 Median 1.5605 1.352 0.59328 2 0 Median 504610000 264660000 239960000 410720000 229770000 180950000 93890000 34888000 59003000 15128 1715;1952 15535 40119;40120;40121;40122 62938;62939;62940;62941;62942;62943;62944;62945 62938 8 YGGDEIPFSPYR AYVPDVTGRYTILIKYGGDEIPFSPYRVRA LIKYGGDEIPFSPYRVRAVPTGDASKCTVT K Y G Y R V 0 1 0 1 0 0 1 2 0 1 0 0 0 1 2 1 0 0 2 0 0 0 12 0 1399.6408 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1622 1633 FLNA;FLJ00119 Filamin-A yes no 2 0.0010354 62.166 2 1.4057 1.4306 NaN 1 Median 1.4057 1.4306 NaN 1 0 Median NaN NaN NaN 0 0 Median 25865000 13747000 12119000 25865000 13747000 12119000 0 0 0 15129 1504 15536 40123;40124 62946;62947;62948 62947 3 YGIICMEDLIHEIYTVGK IALTDNALIARSLGKYGIICMEDLIHEIYT ICMEDLIHEIYTVGKRFKEANNFLWPFKLS K Y G G K R 0 0 0 1 1 0 2 2 1 4 1 1 1 0 0 0 1 0 2 1 0 0 18 0 2153.0537 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 193 210 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 3 6.2641E-06 69.737 3 2.0247 2.0903 7.7323 3 Median 2.0247 2.0903 7.7323 3 0 Median NaN NaN NaN 0 0 Median 77390000 26871000 50519000 77390000 26871000 50519000 0 0 0 15130 240 15537 40125;40126;40127 62949;62950;62951 62951 181 2 YGISNEKPEVK PWMRKTEYISTEFNRYGISNEKPEVKIGVS EFNRYGISNEKPEVKIGVSVKQQFTEEEIY R Y G V K I 0 0 1 0 0 0 2 1 0 1 0 2 0 0 1 1 0 0 1 1 0 0 11 1 1262.6507 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 144 154 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2;3 0.00083589 84.31 3 1.6537 1.9333 9.7474 2 Median 1.6537 1.9333 9.7474 2 0 Median NaN NaN NaN 0 0 Median 106570000 27795000 78775000 106570000 27795000 78775000 0 0 0 15131 46 15538 40128;40129;40130 62952;62953;62954;62955;62956 62955 5 YGLGYQLCDNSVGVLFNDSTR IPIFWVSKWVDYSDKYGLGYQLCDNSVGVL LCDNSVGVLFNDSTRLILYNDGDSLQYIER K Y G T R L 0 1 2 2 1 1 0 3 0 0 3 0 0 1 0 2 1 0 2 2 0 0 21 0 2377.1009 P53350;B2R841;B4E083;Q59GD0;D3DWF3 P53350 421 441 PLK1 Serine/threonine-protein kinase PLK1;Serine/threonine-protein kinase PLK yes no 2 7.9829E-07 55.841 2 0.82449 0.83711 11.129 2 Median 0.82449 0.83711 11.129 2 0 Median NaN NaN NaN 0 0 Median 22730000 13623000 9107100 22730000 13623000 9107100 0 0 0 15132 1604 15539 40131;40132 62957;62958;62959;62960 62959 4 YGLIFHSTFIGR KALFRALKTRGNTPKYGLIFHSTFIGRAAA TPKYGLIFHSTFIGRAAAKNKGRISRYLAN K Y G G R A 0 1 0 0 0 0 0 2 1 2 1 0 0 2 0 1 1 0 1 0 0 0 12 0 1409.7456 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 348 359 NOP56 Nucleolar protein 56 yes no 2;3 5.5623E-05 72.29 4 4 0.94345 0.82459 5.0544 6 Median 0.73872 0.84318 2.8312 2 0 Median 0.96324 0.80509 5.7101 4 0 Median 387830000 202530000 185300000 282190000 150530000 131660000 105640000 51996000 53647000 15133 785 15540 40133;40134;40135;40136;40137;40138;40139;40140 62961;62962;62963;62964;62965;62966;62967;62968;62969;62970;62971;62972;62973;62974;62975;62976 62966 16 YGLIGLNGIGK ELLSDTKLELNSGRRYGLIGLNGIGKSMLL SGRRYGLIGLNGIGKSMLLSAIGKREVPIP R Y G G K S 0 0 1 0 0 0 0 4 0 2 2 1 0 0 0 0 0 0 1 0 0 0 11 0 1103.6339 A0A090N7X1;A0A090N7Y2;Q9UG63;C9JHK9;C9JZV3 A0A090N7X1 114 124 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.030447 48.794 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7141200 0 7141200 7141200 0 7141200 0 0 0 15134 455 15541 40141;40142 62977;62978 62978 2 YGLIYHASLVGQTSPK KALFRALKSRRDTPKYGLIYHASLVGQTSP GLIYHASLVGQTSPKHKGKISRMLAAKTVL K Y G P K H 1 0 0 0 0 1 0 2 1 1 2 1 0 0 1 2 1 0 2 1 0 0 16 0 1732.9148 Q9Y2X3;B3KN82 Q9Y2X3 338 353 NOP58 Nucleolar protein 58 yes no 2;3 2.6086E-05 85.845 4 4 0.87442 0.84261 7.6252 8 Median 0.74017 0.80011 9.7438 4 0 Median 1.0079 0.84261 5.4246 4 0 Median 525790000 280070000 245730000 369870000 202640000 167230000 155920000 77424000 78500000 15135 2129 15542 40143;40144;40145;40146;40147;40148;40149;40150 62979;62980;62981;62982;62983;62984;62985;62986;62987;62988;62989;62990;62991;62992 62988 14 YGLNMCR HGGRVCSNRHGLIRKYGLNMCRQCFRQYAK NRHGLIRKYGLNMCRQCFRQYAKDIGFIKL K Y G C R Q 0 1 1 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 7 0 912.39459 A0A087WTT6;P62273 A0A087WTT6 31 37 RPS29 40S ribosomal protein S29 yes no 2 0.012956 77.72 2 1.3204 1.3413 5.2722 2 Median 1.3204 1.3413 5.2722 2 0 Median NaN NaN NaN 0 0 Median 44487000 18104000 26384000 44487000 18104000 26384000 0 0 0 15136 405 15543 40151;40152 62993;62994 62994 295 2 YGMPPQDAFTTQWLVR FNARQRKAFLNAIMRYGMPPQDAFTTQWLV GMPPQDAFTTQWLVRDLRGKSEKEFKAYVS R Y G V R D 1 1 0 1 0 2 0 1 0 0 1 0 1 1 2 0 2 1 1 1 0 0 16 0 1908.9193 F5GWX5;A0A0C4DGG9;Q14839;B3KY63 F5GWX5 1424 1439 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0001626 53.569 2 1 0.95713 1.0136 16.576 3 Median 0.88893 0.9284 12.421 2 0 Median 1.4234 1.1843 NaN 1 0 Median 54541000 26528000 28013000 48401000 23968000 24434000 6139700 2560400 3579300 15137 515 15544 40153;40154;40155 62995;62996;62997;62998 62996 380 4 YGMSPPGSVADK LLALASKVTLPPHYRYGMSPPGSVADKRKN HYRYGMSPPGSVADKRKNPPWIRRRPVVVE R Y G D K R 1 0 0 1 0 0 0 2 0 0 0 1 1 0 2 2 0 0 1 1 0 0 12 0 1207.5543 X6RJ73;Q96A35;X6RHI2;X6RIR5 X6RJ73 21 32 MRPL24 39S ribosomal protein L24, mitochondrial yes no 2 0.0035355 60.064 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15138 1957 15545 40156 62999 62999 1807 1 YGPESLSEFTQWR KAQADFVKSAVRDVRYGPESLSEFTQWRVR VRYGPESLSEFTQWRVRMISEELVAASRTQ R Y G W R V 0 1 0 0 0 1 2 1 0 0 1 0 0 1 1 2 1 1 1 0 0 0 13 0 1598.7365 A0A140VJD0;Q9UFC0;H7C5S6;Q59FT0;F8WDB4 A0A140VJD0 179 191 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.032717 32.999 1 1.2753 1.1066 NaN 1 Median NaN NaN NaN 0 0 Median 1.2753 1.1066 NaN 1 0 Median 2426100 894320 1531800 0 0 0 2426100 894320 1531800 15139 599 15546 40157 63000 63000 1 YGPIADVSIVYDQQSR SLYTTERDLREVFSKYGPIADVSIVYDQQS GPIADVSIVYDQQSRRSRGFAFVYFENVDD K Y G S R R 1 1 0 2 0 2 0 1 0 2 0 0 0 0 1 2 0 0 2 2 0 0 16 0 1809.8897 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995 Q8N1H4 105 120 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2 1.4258E-12 122.46 2 2 0.98366 0.9845 32.999 4 Median 1.1337 1.3098 1.5117 2 0 Median 0.85415 0.73985 1.5425 2 0 Median 466720000 223090000 243630000 370700000 170470000 200230000 96025000 52622000 43403000 15140 889 15547 40158;40159;40160;40161 63001;63002;63003;63004;63005;63006;63007;63008;63009;63010 63009 10 YGPIVDVYVPLDFYTR ADDTRSEDLRREFGRYGPIVDVYVPLDFYT GPIVDVYVPLDFYTRRPRGFAYVQFEDVRD R Y G T R R 0 1 0 2 0 0 0 1 0 1 1 0 0 1 2 0 1 0 3 3 0 0 16 0 1915.972 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q6IQ42 Q5JRI1 33 48 SRSF10;FUSIP1 Serine/arginine-rich splicing factor 10 yes no 2 2.87E-07 99.215 2 1.1703 1.3016 4.2351 2 Median 1.1703 1.3016 4.2351 2 0 Median NaN NaN NaN 0 0 Median 120430000 56570000 63864000 120430000 56570000 63864000 0 0 0 15141 574 15548 40162;40163 63011;63012 63011 2 YGPLSGVNVVYDQR SLYTTERDLREVFSRYGPLSGVNVVYDQRT RYGPLSGVNVVYDQRTGRSRGFAFVYFERI R Y G Q R T 0 1 1 1 0 1 0 2 0 0 1 0 0 0 1 1 0 0 2 3 0 0 14 0 1565.7838 Q549U1;Q13595 Q549U1 142 155 HSU53209;TRA2A Transformer-2 protein homolog alpha yes no 2 0.00012677 97.911 2 2 1.0375 0.9796 32.998 4 Median 1.1751 1.3229 5.8498 2 0 Median 0.92155 0.74934 1.2519 2 0 Median 162550000 70631000 91919000 138870000 58620000 80251000 23679000 12011000 11668000 15142 1716 15549 40164;40165;40166;40167 63013;63014;63015;63016;63017;63018;63019;63020;63021;63022;63023 63015 11 YGQFSGLNPGGR CSFQILKPADKNKGKYGQFSGLNPGGRPIT KGKYGQFSGLNPGGRPITPPRNSAKAKK__ K Y G G R P 0 1 1 0 0 1 0 4 0 0 1 0 0 1 1 1 0 0 1 0 0 0 12 0 1251.5996 P62136;A0A140VJS9;C0STL0 P62136 306 317 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 2 3.0623E-05 99.855 2 0.85139 0.90887 NaN 1 Median 0.85139 0.90887 NaN 1 0 Median NaN NaN NaN 0 0 Median 38976000 26268000 12707000 38976000 26268000 12707000 0 0 0 15143 1632 15550 40168;40169 63024;63025;63026 63026 3 YGQFSGLNPGGRPITPPR CSFQILKPADKNKGKYGQFSGLNPGGRPIT FSGLNPGGRPITPPRNSAKAKK________ K Y G P R N 0 2 1 0 0 1 0 4 0 1 1 0 0 1 4 1 1 0 1 0 0 0 18 1 1912.9908 P62136;A0A140VJS9;C0STL0 P62136 306 323 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 3 1.1547E-06 85.636 2 2 1.0754 1.0537 17.491 4 Median 0.81628 0.91099 12.821 2 0 Median 1.3492 1.1825 8.5469 2 0 Median 110600000 56258000 54339000 84685000 46301000 38384000 25912000 9957200 15955000 15144 1632 15551 40170;40171;40172;40173 63027;63028;63029;63030;63031;63032 63029 6 YGQLIEINSHSLFSK ALAQKLTIRLSSRYRYGQLIEINSHSLFSK YGQLIEINSHSLFSKWFSESGKLVTKMFQK R Y G S K W 0 0 1 0 0 1 1 1 1 2 2 1 0 1 0 3 0 0 1 0 0 0 15 0 1734.8941 Q15645;H0YAL2 Q15645 206 220 TRIP13 Pachytene checkpoint protein 2 homolog yes no 3 6.9455E-05 72.523 1 1 1.401 1.3284 42.696 2 Median 1.6304 1.7966 NaN 1 0 Median 1.2039 0.98226 NaN 1 0 Median 49713000 18488000 31225000 43335000 15410000 27925000 6377900 3078000 3299900 15145 1763 15552 40174;40175 63033;63034 63033 2 YGSDIVPFSK DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ IQGFRYGSDIVPFSKVDEEQMKYKSEGKCF R Y G S K V 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 2 0 0 1 1 0 0 10 0 1111.555 P13010;Q53T09 P13010 316 325 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 5.549E-06 108.57 2 2 0.32922 0.39688 24.026 3 Plateau 0.35074 0.39421 9.545 2 0 Median 0.32922 0.26441 NaN 1 0 Median 201920000 151080000 50843000 170040000 123550000 46490000 31879000 27526000 4353500 15146 1476 15553 40176;40177;40178;40179 63035;63036;63037;63038;63039 63035 5 YGVFPLR KTLAVSGLGVVGRDKYGVFPLRGKILNVRE LGVVGRDKYGVFPLRGKILNVREASHKQIM K Y G L R G 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 1 0 0 7 0 850.47012 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 481 487 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.0125 105.42 2 2 0.98473 0.99359 17.066 4 Median 0.73113 0.86406 1.3762 2 0 Median 1.3327 1.1586 3.3556 2 0 Median 2143000000 1182200000 960820000 1881400000 1066500000 814890000 261670000 115750000 145930000 15147 1471;1679 15554 40180;40181;40182;40183 63040;63041;63042;63043;63044;63045;63046;63047;63048;63049;63050;63051 63042 12 YGVIILDEAHER GMLLREAMNDPLLERYGVIILDEAHERTLA LERYGVIILDEAHERTLATDILMGVLKEVV R Y G E R T 1 1 0 1 0 0 2 1 1 2 1 0 0 0 0 0 0 0 1 1 0 0 12 0 1413.7252 O43143;B4E0S6 O43143 254 265 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 3 0.0016135 48.568 1 0.63277 0.66986 NaN 1 Median 0.63277 0.66986 NaN 1 0 Median NaN NaN NaN 0 0 Median 41196000 23749000 17447000 41196000 23749000 17447000 0 0 0 15148 1379 15555 40184 63052 63052 1 YGVIIVGNPK LNDPRRLNVALTRARYGVIIVGNPKALSKQ LTRARYGVIIVGNPKALSKQPLWNHLLNYY R Y G P K A 0 0 1 0 0 0 0 2 0 2 0 1 0 0 1 0 0 0 1 2 0 0 10 0 1058.6124 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 868 877 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.045848 36.76 1 1.3394 1.1109 NaN 1 Median NaN NaN NaN 0 0 Median 1.3394 1.1109 NaN 1 0 Median 1788300 827820 960490 0 0 0 1788300 827820 960490 15149 231 15556 40185 63053 63053 1 YGVNPGPIVGTTR VTELTNEDLLDQLVKYGVNPGPIVGTTRKL VKYGVNPGPIVGTTRKLYEKKLLKLREQGT K Y G T R K 0 1 1 0 0 0 0 3 0 1 0 0 0 0 2 0 2 0 1 2 0 0 13 0 1329.7041 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;H0YJH7;P42166 P42166 127 139 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2 0.00023308 68.893 2 2 1.1111 1.1047 13.469 4 Median 1.0798 1.2301 1.1378 2 0 Median 1.151 0.97678 3.3474 2 0 Median 299470000 144900000 154560000 251670000 122790000 128870000 47797000 22107000 25691000 15150 334;1562 15557 40186;40187;40188;40189 63054;63055;63056;63057;63058;63059;63060 63055 7 YGYILPDITK DPAKFPEARLELARKYGYILPDITKDELFK ELARKYGYILPDITKDELFKMLCTRKDPRQ K Y G T K D 0 0 0 1 0 0 0 1 0 2 1 1 0 0 1 0 1 0 2 0 0 0 10 0 1181.6332 E5RIZ4;B2R739;Q9P015 E5RIZ4 181 190 MRPL15 39S ribosomal protein L15, mitochondrial yes no 2 0.047781 63.816 1 1.3425 1.4053 NaN 1 Median 1.3425 1.4053 NaN 1 0 Median NaN NaN NaN 0 0 Median 10516000 4233900 6281700 10516000 4233900 6281700 0 0 0 15151 847 15558 40190 63061 63061 0 YGYTHLSAGELLR PGAGKGTQCARIVEKYGYTHLSAGELLRDE EKYGYTHLSAGELLRDERKNPDSQYGELIE K Y G L R D 1 1 0 0 0 0 1 2 1 0 3 0 0 0 0 1 1 0 2 0 0 0 13 0 1478.7518 Q5T0D2;B4DDL4;B2R6S5;P30085 Q5T0D2 59 71 CMPK1;CMPK UMP-CMP kinase yes no 3 0.0084378 43.761 1 1 1.7606 1.5274 NaN 1 Median NaN NaN NaN 0 0 Median 1.7606 1.5274 NaN 1 0 Median 13732000 808120 12924000 11611000 0 11611000 2121000 808120 1312900 15152 844 15559 40191;40192 63062;63063 63062 2 YHAASAEEQATIER MIQTLEAVKRKQFEKYHAASAEEQATIERN KYHAASAEEQATIERNPYTIFHQALKNCEP K Y H E R N 4 1 0 0 0 1 3 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 14 0 1574.7325 A0A024R8L0;J3QLS3;Q9Y2R9;J3KSI8;J3QQS1;J3QKW2 A0A024R8L0 126 139 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2;3 9.607E-05 108.35 3 1.2419 1.3015 7.3012 3 Median 1.2419 1.3015 7.3012 3 0 Median NaN NaN NaN 0 0 Median 34429000 15116000 19313000 34429000 15116000 19313000 0 0 0 15153 250 15560 40193;40194;40195 63064;63065;63066;63067 63065 3 YHDEADQSALQR KKKGEFPGEKSKRLRYHDEADQSALQRMTR RLRYHDEADQSALQRMTRLRVTWSMQEDGL R Y H Q R M 2 1 0 2 0 2 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1431.6379 Q6AHZ7;Q12789;Q6AWA4;H3BRD0 Q6AHZ7 1246 1257 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 1.1615E-17 138.22 2 0.78526 0.79402 6.2122 2 Median 0.78526 0.79402 6.2122 2 0 Median NaN NaN NaN 0 0 Median 24655000 14073000 10582000 24655000 14073000 10582000 0 0 0 15154 1699 15561 40196;40197 63068;63069;63070;63071;63072 63071 5 YHDIEPGAVVK LLSLRTSIIEAQYLRYHDIEPGAVVKGTVL QYLRYHDIEPGAVVKGTVLTIKSYGMLVKV R Y H V K G 1 0 0 1 0 0 1 1 1 1 0 1 0 0 1 0 0 0 1 2 0 0 11 0 1226.6295 Q14690;B4DH82;B4DES7 Q14690 447 457 PDCD11 Protein RRP5 homolog yes no 2 7.3902E-08 113.62 2 2 1.2066 1.1552 6.4303 4 Median 1.0839 1.2102 0.11058 2 0 Median 1.3463 1.0854 2.3674 2 0 Median 173250000 85310000 87937000 153070000 76971000 76101000 20175000 8339400 11836000 15155 1741 15562 40198;40199;40200;40201 63073;63074;63075;63076;63077;63078;63079;63080;63081 63076 9 YHDMPDVIDFLVLR DPDTGKLTGGSFTMKYHDMPDVIDFLVLRQ KYHDMPDVIDFLVLRQQFDDAKYRRWNIGD K Y H L R Q 0 1 0 3 0 0 0 0 1 1 2 0 1 1 1 0 0 0 1 2 0 0 14 0 1731.8654 Q9NSI6;H7BZR9;Q5R2U7;H7C409;Q8WWQ0 Q8WWQ0 1042 1055 BRWD1;WDR9;PHIP Bromodomain and WD repeat-containing protein 1;PH-interacting protein no no 3 0.00054821 50.897 3 0.96644 1.0264 2.3832 2 Median 0.96644 1.0264 2.3832 2 0 Median NaN NaN NaN 0 0 Median 54238000 27969000 26268000 54238000 27969000 26268000 0 0 0 15156 1942;2068 15563 40202;40203;40204 63082;63083;63084;63085 63084 1785 4 YHFLILLFSK FVISLDPPIKQGQTRYHFLILLFSKDEDIS QGQTRYHFLILLFSKDEDISLTLNMNEEEV R Y H S K D 0 0 0 0 0 0 0 0 1 1 3 1 0 2 0 1 0 0 1 0 0 0 10 0 1279.7329 A0A024R4Z6;Q08945 A0A024R4Z6 270 279 SSRP1 FACT complex subunit SSRP1 yes no 2 1.1374E-05 104.2 1 1.0284 0.81178 NaN 1 Median NaN NaN NaN 0 0 Median 1.0284 0.81178 NaN 1 0 Median 5345000 2841700 2503300 0 0 0 5345000 2841700 2503300 15157 167 15564 40205 63086 63086 1 YHIEVNR SQICTVGRLWISVARYHIEVNRVPAGNWVL RLWISVARYHIEVNRVPAGNWVLIEGVDQP R Y H N R V 0 1 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 929.47191 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 488 494 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.01383 101.72 2 0.87742 0.97285 15.105 2 Median 0.87742 0.97285 15.105 2 0 Median NaN NaN NaN 0 0 Median 125280000 67488000 57795000 125280000 67488000 57795000 0 0 0 15158 794 15565 40206;40207 63087;63088;63089 63088 3 YHIGDEVK PMHLADILMKNPEKKYHIGDEVKCRVLLCD MKNPEKKYHIGDEVKCRVLLCDPEAKKLMM K Y H V K C 0 0 0 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 0 0 8 0 959.47125 Q14690;B4DH82;B4DES7 Q14690 497 504 PDCD11 Protein RRP5 homolog yes no 2 0.0027401 98.997 2 2 1.1067 1.0604 4.641 4 Median 0.97169 1.0896 1.3436 2 0 Median 1.259 1.0155 3.6231 2 0 Median 155710000 77475000 78237000 144160000 72903000 71259000 11551000 4572500 6978400 15159 1741 15566 40208;40209;40210;40211 63090;63091;63092;63093;63094;63095;63096 63090 7 YHPGYFGK GNAGGLHHHRINFDKYHPGYFGKVGMKHYH HRINFDKYHPGYFGKVGMKHYHLKRNQSFC K Y H G K V 0 0 0 0 0 0 0 2 1 0 0 1 0 1 1 0 0 0 2 0 0 0 8 0 967.4552 Q9BQQ5;E9PLL6;Q6NZ52;P46776 Q9BQQ5 48 55 L27a;RPL27A 60S ribosomal protein L27a yes no 2 0.0082471 92.319 2 2 0.81219 0.72876 16.924 3 Median 0.69354 0.80884 22.37 2 0 Median 0.84918 0.72876 NaN 1 0 Median 658130000 405560000 252570000 528010000 312140000 215870000 130120000 93422000 36699000 15160 1247 15567 40212;40213;40214;40215 63097;63098;63099;63100;63101 63099 5 YHSDDYIK EIYRPHKANAEEMTKYHSDDYIKFLRSIRP NAEEMTKYHSDDYIKFLRSIRPDNMSEYSK K Y H I K F 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 1 0 0 2 0 0 0 8 0 1039.4611 Q6IT96;Q13547;B5BU61;Q5TEE2;B4DSK9;B7Z3S4 Q6IT96 67 74 HDAC1 Histone deacetylase;Histone deacetylase 1 yes no 2 1.5387E-05 143.85 2 1 0.8438 0.89361 33.277 3 Median 0.78893 0.80651 14.504 2 0 Median 1.7605 1.3955 NaN 1 0 Median 53316000 27588000 25728000 48588000 25918000 22670000 4728200 1669400 3058800 15161 1715 15568 40216;40217;40218 63102;63103;63104;63105 63104 3 YHSDEYIK EIYRPHKATAEEMTKYHSDEYIKFLRSIRP TAEEMTKYHSDEYIKFLRSIRPDNMSEYSK K Y H I K F 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 1 0 0 2 0 0 0 8 0 1053.4767 Q92769;B3KUJ5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;H3BM24;E5RK19 Q92769 68 75 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 2 2.5665E-14 172.15 2 2 1.2009 1.1254 21.592 4 Median 0.84809 0.94038 3.3296 2 0 Median 1.7003 1.3607 4.7663 2 0 Median 146870000 79028000 67840000 126420000 71263000 55153000 20452000 7765000 12687000 15162 1952 15569 40219;40220;40221;40222 63106;63107;63108;63109;63110;63111;63112;63113 63109 8 YHTINGHNAEVR TFDDHDPVDKIVLQKYHTINGHNAEVRKAL LQKYHTINGHNAEVRKALSRQEMQEVQSSR K Y H V R K 1 1 2 0 0 0 1 1 2 1 0 0 0 0 0 0 1 0 1 1 0 0 12 0 1409.68 P22626;A0A087WUI2;I6L957;A0A024RA28 P22626 174 185 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 3 1.6625E-08 113.24 1 1.4084 1.4221 NaN 1 Median 1.4084 1.4221 NaN 1 0 Median NaN NaN NaN 0 0 Median 10174000 3120600 7053900 10174000 3120600 7053900 0 0 0 15163 1508 15570 40223 63114 63114 1 YHTMQAAVDAVAR LLSQFREYLDYDDTRYHTMQAAVDAVARVT TRYHTMQAAVDAVARVTGQHPEVPPAFWNN R Y H A R V 4 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 0 13 0 1431.6929 Q9BVI4;F5H303 Q9BVI4 182 194 NOC4L Nucleolar complex protein 4 homolog yes no 2 1.239E-09 122.7 2 1.4463 1.4478 19.388 2 Median 1.4463 1.4478 19.388 2 0 Median NaN NaN NaN 0 0 Median 26921000 10992000 15929000 26921000 10992000 15929000 0 0 0 15164 2007 15571 40224;40225 63115;63116;63117 63116 1848 3 YHTSQSGDEMTSLSEYVSR HEDSTNRRRLSELLRYHTSQSGDEMTSLSE QSGDEMTSLSEYVSRMKETQKSIYYITGES R Y H S R M 0 1 0 1 0 1 2 1 1 0 1 0 1 0 0 5 2 0 2 1 0 0 19 0 2175.9379 B4DMA2;A0A024RD80;P08238;B4DGL0;Q9H6X9;A8K3W9 B4DMA2 419 437 HSP90AB1 Heat shock protein HSP 90-beta yes no 3 3.0397E-06 71.073 2 2.3973 2.6963 4.2876 2 Median 2.3973 2.6963 4.2876 2 0 Median NaN NaN NaN 0 0 Median 147030000 39965000 107060000 147030000 39965000 107060000 0 0 0 15165 379 15572 40226;40227 63118;63119;63120;63121 63118 278 4 YHVLVNLGK RKEIDLLLGQTDDTRYHVLVNLGKKITDYG QTDDTRYHVLVNLGKKITDYGGDKEIQNMD R Y H G K K 0 0 1 0 0 0 0 1 1 0 2 1 0 0 0 0 0 0 1 2 0 0 9 0 1041.5971 O75643 O75643 169 177 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00017704 107.32 1 2 0.89574 0.73596 19.74 3 Median 0.89574 0.99224 NaN 1 0 Median 0.89477 0.7092 5.2366 2 0 Median 55313000 31327000 23986000 46493000 26776000 19716000 8820500 4550300 4270200 15166 1411 15573 40228;40229;40230 63122;63123;63124;63125;63126;63127 63123 6 YHVVSGADDYTVK GHTKAVHTVDFTADKYHVVSGADDYTVKLW DKYHVVSGADDYTVKLWDIPNSKEILTFKE K Y H V K L 1 0 0 2 0 0 0 1 1 0 0 1 0 0 0 1 1 0 2 3 0 0 13 0 1452.6885 Q8TED0;H0Y8P4 Q8TED0 135 147 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 8.2127E-19 143.5 2 2 1.2501 1.0037 2.6855 3 Median 0.86682 0.96855 NaN 1 0 Median 1.2802 1.0123 1.1952 2 0 Median 122270000 66528000 55739000 92095000 53091000 39004000 30173000 13437000 16735000 15167 1936 15574 40231;40232;40233;40234 63128;63129;63130;63131;63132;63133;63134 63130 7 YHWLVLPWTSISSLK DEQVVVIKDKYPKARYHWLVLPWTSISSLK YHWLVLPWTSISSLKAVAREHLELLKHMHT R Y H L K A 0 0 0 0 0 0 0 0 1 1 3 1 0 0 1 3 1 2 1 1 0 0 15 0 1828.9876 F8W6G5;C9JZ40;F5HRF8;A0A0A0MRW7;Q7Z2E3 F8W6G5 142 156 APTX Aprataxin yes no 3 1.7733E-05 64.394 2 0.76743 0.77696 NaN 1 Median 0.76743 0.77696 NaN 1 0 Median NaN NaN NaN 0 0 Median 9392400 6830600 2561800 9392400 6830600 2561800 0 0 0 15168 472 15575 40235;40236 63135;63136;63137 63137 3 YHYELLNYIDLPVLAIHGK KKKLMVFFSSCMSVKYHYELLNYIDLPVLA LLNYIDLPVLAIHGKQKQNKRTTTFFQFCN K Y H G K Q 1 0 1 1 0 0 1 1 2 2 4 1 0 0 1 0 0 0 3 1 0 0 19 0 2270.2099 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452;Q59FR7 Q4ZG72 316 334 DDX18 ATP-dependent RNA helicase DDX18 yes no 3;4 2.4347E-17 119.23 4 1.5955 1.3271 7.4992 4 Median NaN NaN NaN 0 0 Median 1.5955 1.3271 7.4992 4 0 Median 210500000 80763000 129740000 0 0 0 210500000 80763000 129740000 15169 303 15576 40237;40238;40239;40240 63138;63139;63140;63141;63142;63143;63144 63141 7 YIAPTVLTDVDPK GQKIAFGGETDEATRYIAPTVLTDVDPKTK TRYIAPTVLTDVDPKTKVMQEEIFGPILPI R Y I P K T 1 0 0 2 0 0 0 0 0 1 1 1 0 0 2 0 2 0 1 2 0 0 13 0 1430.7657 J3QRD1;Q59H65;P51648;Q68D64 J3QRD1 312 324 ALDH3A2;DKFZp686E23276 Fatty aldehyde dehydrogenase yes no 2 0.00021605 69.721 2 1 1.1647 1.2453 12.178 3 Median 1.0963 1.1279 15.205 2 0 Median 1.5173 1.2453 NaN 1 0 Median 47126000 20419000 26707000 44708000 19424000 25284000 2418100 995210 1422900 15170 1338 15577 40241;40242;40243 63145;63146;63147;63148;63149;63150 63146 6 YIASVQGSTPSPR ______________________________ ERYIASVQGSTPSPRQKSMKGFYFAKLYYE R Y I P R Q 1 1 0 0 0 1 0 1 0 1 0 0 0 0 2 3 1 0 1 1 0 0 13 0 1361.6939 P49792;D3DX73;F8WBP7 P49792 11 23 RANBP2;hCG_1994636 E3 SUMO-protein ligase RanBP2 yes no 2 2.3207E-13 128.03 2 1.3043 1.3172 3.657 2 Median 1.3043 1.3172 3.657 2 0 Median NaN NaN NaN 0 0 Median 23630000 10593000 13037000 23630000 10593000 13037000 0 0 0 15171 1588 15578 40244;40245 63151;63152;63153;63154 63154 4 YICDNQDTISSK GDLLECADDRADLAKYICDNQDTISSKLKE LAKYICDNQDTISSKLKECCDKPLLEKSHC K Y I S K L 0 0 1 2 1 1 0 0 0 2 0 1 0 0 0 2 1 0 1 0 0 0 12 0 1442.6348 CON__P02769 CON__P02769 286 297 yes yes 2 0.037332 44.863 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7113300 7113300 0 7113300 7113300 0 0 0 0 + 15172 1153 15579 40246 63155 63155 1 YIDQEELNK SGKDKKKKTKKIKEKYIDQEELNKTKPIWT KKIKEKYIDQEELNKTKPIWTRNPDDITQE K Y I N K T 0 0 1 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1150.5506 B4DMA2;A0A024RD80;P08238;B4DGL0;Q6PK50;Q58FF8;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q14568 B4DMA2 238 246 HSP90AB1;HSP90AB2P;EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 no no 2 1.0356E-11 155.07 2 2 2.3517 2.714 45.038 3 Plateau 2.3413 2.6716 2.228 2 0 Median 1.5078 1.2252 NaN 1 0 Median 351230000 107030000 244200000 322780000 95536000 227240000 28448000 11490000 16958000 15173 379;1348;1800 15580 40247;40248;40249;40250 63156;63157;63158;63159;63160;63161;63162;63163 63159 8 YIDSADLEPITSQEEPVR LEHSALAINHKLEIKYIDSADLEPITSQEE SADLEPITSQEEPVRYHEAWQKLCSAHGVL K Y I V R Y 1 1 0 2 0 1 3 0 0 2 1 0 0 0 2 2 1 0 1 1 0 0 18 0 2060.9902 P17812;B4E1E0;B4DMB5 P17812 336 353 CTPS1 CTP synthase 1;CTP synthase yes no 2 1.7403E-05 74.46 2 1.7836 1.8805 6.7341 2 Median 1.7836 1.8805 6.7341 2 0 Median NaN NaN NaN 0 0 Median 60710000 25022000 35688000 60710000 25022000 35688000 0 0 0 15174 1494 15581 40251;40252 63164;63165;63166 63164 3 YIEGLSAESNSISK PPKTQRLLHSEAYLKYIEGLSAESNSISKW KYIEGLSAESNSISKWDQTLAARRRDVHLS K Y I S K W 1 0 1 0 0 0 2 1 0 2 1 1 0 0 0 4 0 0 1 0 0 0 14 0 1496.7359 Q86U86;Q9NVM2;Q5EBM5 Q86U86 1613 1626 PBRM1;PB1 Protein polybromo-1 yes no 2 0.00018442 71.555 2 0.71446 0.7465 NaN 1 Median 0.71446 0.7465 NaN 1 0 Median NaN NaN NaN 0 0 Median 15663000 11364000 4299400 15663000 11364000 4299400 0 0 0 15175 1883 15582 40253;40254 63167;63168;63169;63170 63169 4 YIESPVLFLR SIIRHRESTPKVVSKYIESPVLFLREDVGK KVVSKYIESPVLFLREDVGKVKFDIRYIVL K Y I L R E 0 1 0 0 0 0 1 0 0 1 2 0 0 1 1 1 0 0 1 1 0 0 10 0 1235.6914 A0A024R4U3;Q14166 A0A024R4U3 452 461 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 2 0.005628 67.993 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9972200 0 9972200 9972200 0 9972200 0 0 0 15176 161 15583 40255;40256 63171;63172 63171 2 YIFCVSGDFVK SELNFRRAVFSADSKYIFCVSGDFVKVYST ADSKYIFCVSGDFVKVYSTVTEECVHILHG K Y I V K V 0 0 0 1 1 0 0 1 0 1 0 1 0 2 0 1 0 0 1 2 0 0 11 0 1333.6377 A8K330;Q8IWA0;F8WE20;F8WC81 A8K330 30 40 WDR75 WD repeat-containing protein 75 yes no 2 0.002424 61.65 2 1 0.89311 0.90326 16.726 3 Median 0.87155 0.87572 4.3787 2 0 Median 1.4292 1.1641 NaN 1 0 Median 31237000 15596000 15641000 24475000 12904000 11570000 6762100 2691700 4070400 15177 716 15584 40257;40258;40259 63173;63174;63175;63176;63177 63176 5 YIFSVVENLQR FLPRPIRQQLLYKRRYIFSVVENLQRLCYM YKRRYIFSVVENLQRLCYMGLLQFGPTEKF R Y I Q R L 0 1 1 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 1 2 0 0 11 0 1366.7245 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 961 971 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.00076568 85.731 2 2 0.96155 0.91062 26.343 4 Median 0.72581 0.74443 9.1513 2 0 Median 1.3497 1.1426 12.747 2 0 Median 35659000 15608000 20051000 29258000 12890000 16367000 6400700 2717400 3683300 15178 1699 15585 40260;40261;40262;40263 63178;63179;63180;63181;63182 63180 5 YIFTLGDIAQLCPAR KENGTGNMDEDLLVKYIFTLGDIAQLCPAR YIFTLGDIAQLCPARVEKRIFLLIQSVLAS K Y I A R V 2 1 0 1 1 1 0 1 0 2 2 0 0 1 1 0 1 0 1 0 0 0 15 0 1736.892 P42695;G3V1A9 P42695 856 870 NCAPD3 Condensin-2 complex subunit D3 yes no 2 6.8913E-22 141.88 2 0.9648 0.99508 1.708 2 Median 0.9648 0.99508 1.708 2 0 Median NaN NaN NaN 0 0 Median 40990000 20531000 20459000 40990000 20531000 20459000 0 0 0 15179 1565 15586 40264;40265 63183;63184;63185;63186;63187 63186 5 YIFTMLSSLAR FGTRLHGGKDSASPRYIFTMLSSLARLLFP ASPRYIFTMLSSLARLLFPPKDDHTLKFLY R Y I A R L 1 1 0 0 0 0 0 0 0 1 2 0 1 1 0 2 1 0 1 0 0 0 11 0 1300.6849 P11388 P11388 805 815 TOP2A DNA topoisomerase 2-alpha yes yes 2 9.0215E-11 136.57 8 8 1.3307 1.2037 33.448 15 Median 1.3307 1.5153 44.092 7 0 Median 1.1831 1.0322 23.081 8 0 Median 863830000 400400000 463430000 575350000 267130000 308220000 288480000 133270000 155210000 15180 1471 15587;15588 40266;40267;40268;40269;40270;40271;40272;40273;40274;40275;40276;40277;40278;40279;40280;40281 63188;63189;63190;63191;63192;63193;63194;63195;63196;63197;63198;63199;63200;63201;63202;63203;63204;63205;63206;63207;63208;63209;63210;63211;63212;63213;63214;63215;63216 63210 1215 29 YIFTMLSTLAR FGTRLHGGKDAASPRYIFTMLSTLARLLFP ASPRYIFTMLSTLARLLFPAVDDNLLKFLY R Y I A R L 1 1 0 0 0 0 0 0 0 1 2 0 1 1 0 1 2 0 1 0 0 0 11 0 1314.7006 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 798 808 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.0021074 63.216 3 2 1.1313 1.0527 3.7384 3 Median 1.0492 1.0527 NaN 1 0 Median 1.1838 1.037 5.1429 2 0 Median 36498000 10859000 25639000 30390000 8129100 22261000 6108200 2729400 3378800 15181 1679 15589;15590 40282;40283;40284;40285;40286 63217;63218;63219;63220;63221 63219 1488 5 YIGENLQLLVDRPDGTYCFR LTEEETRVMFEKIAKYIGENLQLLVDRPDG LQLLVDRPDGTYCFRLHNDRVYYVSEKIMK K Y I F R L 0 2 1 2 1 1 1 2 0 1 3 0 0 1 1 0 1 0 2 1 0 0 20 1 2428.1845 Q9Y221;B3KM49;J3QLW7 Q9Y221 19 38 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 3 7.4569E-41 156.11 2 2 1.0387 1.023 6.5148 4 Median 0.90688 1.023 6.0137 2 0 Median 1.1884 1.0351 9.4759 2 0 Median 300120000 156980000 143130000 200150000 114000000 86153000 99967000 42989000 56978000 15182 2119 15591 40287;40288;40289;40290 63222;63223;63224;63225;63226;63227;63228;63229 63223 8 YIGEVGDIVVGR ERVNKLICVKALKTRYIGEVGDIVVGRITE KTRYIGEVGDIVVGRITEVQQKRWKVETNS R Y I G R I 0 1 0 1 0 0 1 3 0 2 0 0 0 0 0 0 0 0 1 3 0 0 12 0 1275.6823 Q13868;A3KFL5;A3KFL2;B4E001;A3KFL1 Q13868 76 87 EXOSC2 Exosome complex component RRP4 yes no 2 0.00013626 93.667 2 2 1.0344 0.96306 15.677 4 Median 1.0344 1.094 11.194 2 0 Median 1.023 0.86616 8.1623 2 0 Median 82995000 42218000 40777000 69064000 35286000 33778000 13931000 6932700 6998400 15183 1722 15592 40291;40292;40293;40294 63230;63231;63232;63233;63234;63235;63236 63230 7 YIHFPVTVVSAPGLAPSATPGAPR GPGDSSEEESSPTSRYIHFPVTVVSAPGLA SAPGLAPSATPGAPRIEQLDGVDDGTDSEA R Y I P R I 4 1 0 0 0 0 0 2 1 1 1 0 0 1 5 2 2 0 1 3 0 0 24 0 2404.2903 Q9UMN6 Q9UMN6 2034 2057 KMT2B Histone-lysine N-methyltransferase 2B yes yes 3 0.039717 11.966 1 1.496 1.2468 NaN 1 Median NaN NaN NaN 0 0 Median 1.496 1.2468 NaN 1 0 Median 6368000 2648200 3719800 0 0 0 6368000 2648200 3719800 15184 2113 15593 40295 63237 63237 1 YIIEELNVR HQDPEALKDIKSLEKYIIEELNVRKVTLST IKSLEKYIIEELNVRKVTLSTDKNKYGIRL K Y I V R K 0 1 1 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1147.6237 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;Q7Z355;Q6P0M4;B4DVX2;Q7L4K8 Q59G75 886 894 IARS;DKFZp686L0869;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.013285 60.478 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15185 1561 15594 40296;40297 63238;63239 63239 2 YILAATLDNTLK DNPPVSFVKFSPNGKYILAATLDNTLKLWD NGKYILAATLDNTLKLWDYSKGKCLKTYTG K Y I L K L 2 0 1 1 0 0 0 0 0 1 3 1 0 0 0 0 2 0 1 0 0 0 12 0 1334.7446 P61964 P61964 228 239 WDR5 WD repeat-containing protein 5 yes yes 2 8.1241E-05 96.89 2 2 1.8995 1.5187 5.3436 2 Median NaN NaN NaN 0 0 Median 1.8995 1.5187 5.3436 2 0 Median 46374000 29945000 16429000 21763000 21763000 0 24610000 8181200 16429000 15186 1630 15595 40298;40299;40300;40301 63240;63241;63242;63243;63244;63245;63246 63245 7 YILAEPDPHAPDPEK HGYPLEHPFNKDGYRYILAEPDPHAPDPEK YILAEPDPHAPDPEKLELDWWAGKPIPGDL R Y I E K L 2 0 0 2 0 0 2 0 1 1 1 1 0 0 4 0 0 0 1 0 0 0 15 0 1690.8203 A8K6T5;Q9UBL3;F5H8F7;B4DPT1 A8K6T5 343 357 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 3 0.0006944 39.629 1 1 1.1471 1.2373 NaN 1 Median 1.1471 1.2373 NaN 1 0 Median NaN NaN NaN 0 0 Median 24138000 14408000 9729500 22646000 12917000 9729500 1491800 1491800 0 15187 763 15596 40302;40303 63247;63248 63247 2 YILAGGNSSGK YLVSVCSINAMHPTRYILAGGNSSGKIHVF HPTRYILAGGNSSGKIHVFMNEKSC_____ R Y I G K I 1 0 1 0 0 0 0 3 0 1 1 1 0 0 0 2 0 0 1 0 0 0 11 0 1065.5455 A0A0C4DFX7;Q9H967 A0A0C4DFX7 542 552 WDR76 WD repeat-containing protein 76 yes no 2 0.00054053 74.376 2 0.78682 0.81479 NaN 1 Median 0.78682 0.81479 NaN 1 0 Median NaN NaN NaN 0 0 Median 33431000 26587000 6843900 33431000 26587000 6843900 0 0 0 15188 508 15597 40304;40305 63249;63250 63249 2 YILDYPLGDK QSEPARVQCRQVFLKYILDYPLGDKLRPNL QVFLKYILDYPLGDKLRPNLEFMLAQLNYE K Y I D K L 0 0 0 2 0 0 0 1 0 1 2 1 0 0 1 0 0 0 2 0 0 0 10 0 1195.6125 O75691;B4DN27 O75691 2271 2280 UTP20 Small subunit processome component 20 homolog yes no 2 0.016025 48.423 2 1.6874 1.3468 4.4833 2 Median NaN NaN NaN 0 0 Median 1.6874 1.3468 4.4833 2 0 Median 9101700 3300200 5801500 0 0 0 9101700 3300200 5801500 15189 1412 15598 40306;40307 63251;63252 63252 2 YILNVTPNLPNFFEK RDSANLESLAKLGIRYILNVTPNLPNFFEK YILNVTPNLPNFFEKNGDFHYKQIPISDHW R Y I E K N 0 0 3 0 0 0 1 0 0 1 2 1 0 2 2 0 1 0 1 1 0 0 15 0 1807.9509 Q6P9C2;B2RAL9;Q99956;Q8N4A4 Q6P9C2 232 246 DUSP9 Dual specificity protein phosphatase;Dual specificity protein phosphatase 9 yes no 2 4.4241E-05 85.813 2 0.50403 0.5168 6.4141 2 Median 0.50403 0.5168 6.4141 2 0 Median NaN NaN NaN 0 0 Median 22849000 13747000 9102200 22849000 13747000 9102200 0 0 0 15190 872 15599 40308;40309 63253;63254 63253 2 YILQGVTSWGLGCAR QGDSGGPLVCFEKDKYILQGVTSWGLGCAR YILQGVTSWGLGCARPNKPGVYVRVSPYVP K Y I A R P 1 1 0 0 1 1 0 3 0 1 2 0 0 0 0 1 1 1 1 1 0 0 15 0 1679.8454 CON__P06868;B2R7F8;P00747;B4DPH4;Q68DS2;Q1HP67;P08519 CON__P06868 774 788 PLG;DKFZp779M0222;LPA Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B;Apolipoprotein(a) yes no 2 0.016523 59.198 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3000200 3000200 0 0 0 0 3000200 3000200 0 + 15191 1157 15600 40310;40311 63255;63256 63256 2 YILVTGGVISGIGK ______________________________ KYILVTGGVISGIGKGIIASSVGTILKSCG K Y I G K G 0 0 0 0 0 0 0 4 0 3 1 1 0 0 0 1 1 0 1 2 0 0 14 0 1375.8075 P17812;B4DMB5;B7Z9C4;A0A024RC00;Q9NRF8 P17812 3 16 CTPS1;CTPS2 CTP synthase 1;CTP synthase;CTP synthase 2 yes no 2 0.00013275 79.693 2 2 2.2315 2.3174 48.943 4 Linear 2.0752 2.1013 9.8175 2 0 Median 1.1582 0.90837 7.4961 2 0 Median 53581000 18023000 35558000 46668000 14957000 31711000 6913100 3066200 3846900 15192 1494 15601 40312;40313;40314;40315 63257;63258;63259;63260;63261;63262;63263 63259 7 YIMLNPSSR TWLVSWTENIQGSIKYIMLNPSSRIKGEKD IQGSIKYIMLNPSSRIKGEKDWQKYETARR K Y I S R I 0 1 1 0 0 0 0 0 0 1 1 0 1 0 1 2 0 0 1 0 0 0 9 0 1079.5434 P11387;B9EG90 P11387 426 434 TOP1 DNA topoisomerase 1 yes no 2 0.00013312 103.83 6 3 1.4174 1.6459 29.058 9 Plateau 1.407 1.6205 32.913 6 0 Median 1.5611 1.2902 21.866 3 0 Median 725760000 303210000 422550000 679020000 283970000 395060000 46738000 19240000 27497000 15193 1470 15602;15603 40316;40317;40318;40319;40320;40321;40322;40323;40324 63264;63265;63266;63267;63268;63269;63270;63271;63272;63273;63274;63275;63276;63277;63278 63267 1190 15 YINENLIVNTDELGR SVISGYRLACKEAVRYINENLIVNTDELGR YINENLIVNTDELGRDCLINAAKTSMSSKI R Y I G R D 0 1 3 1 0 0 2 1 0 2 2 0 0 0 0 0 1 0 1 1 0 0 15 0 1761.8897 P17987;F5H136;E7ERF2;F5H7Y1 P17987 131 145 TCP1 T-complex protein 1 subunit alpha yes no 2 2.7979E-10 107.53 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7456600 0 7456600 7456600 0 7456600 0 0 0 15194 1496 15604 40325 63279;63280 63280 2 YIPPIPVHR LATETVYVDDASWMRYIPPIPVHRDFGFGW DASWMRYIPPIPVHRDFGFGWALVGDILLC R Y I H R D 0 1 0 0 0 0 0 0 1 2 0 0 0 0 3 0 0 0 1 1 0 0 9 0 1090.6287 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 888 896 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 0.0053002 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6160000 6160000 0 6160000 6160000 0 0 0 0 15195 1699 15605 40326 63281;63282 63282 2 YIQDFQR LSKKYKELPEKKKMKYIQDFQREKQEFERN LPEKKKMKYIQDFQREKQEFERNLARFRED K Y I Q R E 0 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 7 0 968.47158 E9PKP7;P17480;A8K962;B4DNQ1;O00164;Q05BZ1;E9PMM2 E9PKP7 161 167 UBTF Nucleolar transcription factor 1 yes no 2 0.016891 97.602 1 0.61665 0.70325 NaN 1 Median 0.61665 0.70325 NaN 1 0 Median NaN NaN NaN 0 0 Median 139660000 90079000 49580000 139660000 90079000 49580000 0 0 0 15196 1244 15606 40327 63283;63284 63284 2 YIQELWR ______________________________ ______________________________ K Y I W R K 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 7 0 1006.5236 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7ENU7;E7EX53;B4DEN1;E7ERA2 A0A024R2Q4 6 12 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 0.0077251 128.75 2 2 0.73339 0.74201 12.878 4 Median 0.70495 0.82874 0.74884 2 0 Median 0.77944 0.66327 0.97891 2 0 Median 954520000 564840000 389690000 906500000 537330000 369180000 48020000 27511000 20509000 15197 121 15607 40328;40329;40330;40331 63285;63286;63287;63288;63289;63290;63291;63292;63293;63294;63295;63296 63287 12 YIQPWESEFIDSQR GMSHEEDQLIPNLYRYIQPWESEFIDSQRV RYIQPWESEFIDSQRVWAEYALKRQEAIAQ R Y I Q R V 0 1 0 1 0 2 2 0 0 2 0 0 0 1 1 2 0 1 1 0 0 0 14 0 1796.837 Q6P2Q9;B4DK16 Q6P2Q9 1371 1384 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00017836 86.313 3 2 0.76308 0.69835 5.5526 4 Median 0.67211 0.673 8.6094 2 0 Median 0.82766 0.69835 2.169 2 0 Median 42298000 25864000 16434000 32981000 20341000 12640000 9317400 5523000 3794400 15198 1854 15608 40332;40333;40334;40335;40336 63297;63298;63299;63300;63301;63302 63297 6 YISENCETSTMNIDR CVNGVDGEPCPEDYKYISENCETSTMNIDR YISENCETSTMNIDRNITHLQHCTCVDDCS K Y I D R N 0 1 2 1 1 0 2 0 0 2 0 0 1 0 0 2 2 0 1 0 0 0 15 0 1831.7717 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8;H0Y4K5 Q59FM7 773 787 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.00010837 69.451 2 0.76488 0.79628 NaN 1 Median 0.76488 0.79628 NaN 1 0 Median NaN NaN NaN 0 0 Median 4456100 1777300 2678800 4456100 1777300 2678800 0 0 0 15199 364 15609 40337;40338 63303;63304 63304 272 2 YISSQIERPIR GENGPVLEVICSRMRYISSQIERPIRIVAL SRMRYISSQIERPIRIVALSSSLSNAKDVA R Y I I R I 0 2 0 0 0 1 1 0 0 3 0 0 0 0 1 2 0 0 1 0 0 0 11 1 1360.7463 O75643;A4FU77;B4E150;B4E0P5 O75643 1476 1486 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.014588 30.55 1 0.90254 1.0418 NaN 1 Median 0.90254 1.0418 NaN 1 0 Median NaN NaN NaN 0 0 Median 66403000 27717000 38686000 66403000 27717000 38686000 0 0 0 15200 1411 15610 40339 63305 63305 1 YITAHGLPPTASALGPGPPPPEPLPGSGPR ATARAFKIIREAYKKYITAHGLPPTASALG PGPPPPEPLPGSGPRALRQKIVIK______ K Y I P R A 3 1 0 0 0 0 1 5 1 1 3 0 0 0 10 2 2 0 1 0 0 0 30 0 2900.5185 Q15906 Q15906 326 355 VPS72 Vacuolar protein sorting-associated protein 72 homolog yes yes 3 0.00044144 24.835 1 2 0.9582 0.79626 6.5331 3 Median 0.7879 0.77462 NaN 1 0 Median 0.99452 0.83576 6.8475 2 0 Median 22332000 13210000 9121200 13494000 8918300 4575300 8838100 4292100 4546000 15201 1767 15611 40340;40341;40342 63306;63307;63308;63309;63310;63311;63312 63307 7 YITASTFAQAR GWKAGPEGTSQEIPKYITASTFAQARAAEI EIPKYITASTFAQARAAEISAMLKAVTQKS K Y I A R A 3 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 11 0 1227.6248 Q96F88;Q99575;E5RK39 Q96F88 101 111 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.004329 66.299 1 1 0.6024 0.50401 NaN 1 Median NaN NaN NaN 0 0 Median 0.6024 0.50401 NaN 1 0 Median 15223000 13267000 1955600 10309000 10309000 0 4914500 2959000 1955600 15202 1965 15612 40343;40344 63313;63314 63313 2 YIVLLR LFLREDVGKVKFDIRYIVLLRSVRPLRLFV VGKVKFDIRYIVLLRSVRPLRLFVYDVFWL R Y I L R S 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 6 0 775.49561 A0A024R4U3;Q14166 A0A024R4U3 473 478 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 2 0.044456 76.553 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15203 161 15613 40345 63315 63315 1 YKAEDEVQR LSKEEIERMVQEAEKYKAEDEVQRERVSAK VQEAEKYKAEDEVQRERVSAKNALESYAFN K Y K Q R E 1 1 0 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 9 1 1136.5462 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DFN9;B4DNT8;B4DI39;B4DWK5;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNX1;B4E1T6 A8K5I0 525 533 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2 0.0018717 101.25 1 0.84819 0.91505 NaN 1 Median 0.84819 0.91505 NaN 1 0 Median NaN NaN NaN 0 0 Median 10958000 5965100 4993400 10958000 5965100 4993400 0 0 0 15204 533 15614 40346 63316 63316 1 YKDDPVDLR EMKSPREPGYKAEGKYKDDPVDLRLDIERR YKAEGKYKDDPVDLRLDIERRKKHKERDLK K Y K L R L 0 1 0 3 0 0 0 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 9 1 1119.556 Q9Y2W1 Q9Y2W1 710 718 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.0062801 89.08 2 1.2544 1.4375 9.9134 2 Median 1.2544 1.4375 9.9134 2 0 Median NaN NaN NaN 0 0 Median 73744000 32670000 41074000 73744000 32670000 41074000 0 0 0 15205 2128 15615 40347;40348 63317;63318;63319;63320;63321 63321 5 YKEDGEALLILLPSEK EDANTYIHRAGRTARYKEDGEALLILLPSE KEDGEALLILLPSEKAMVQQLLQKKVPVKE R Y K E K A 1 0 0 1 0 0 3 1 0 1 4 2 0 0 1 1 0 0 1 0 0 0 16 1 1816.9822 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 409 424 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 3 0.00037035 36.112 2 0.9102 0.79207 7.0385 2 Median NaN NaN NaN 0 0 Median 0.9102 0.79207 7.0385 2 0 Median 6175200 3456700 2718400 0 0 0 6175200 3456700 2718400 15206 1708 15616 40349;40350 63322;63323 63323 2 YKEETIEK ERKAKSRQVGKEKGKYKEETIEKMQD____ VGKEKGKYKEETIEKMQD____________ K Y K E K M 0 0 0 0 0 0 3 0 0 1 0 2 0 0 0 0 1 0 1 0 0 0 8 1 1038.5233 Q6IBH6;P61254;A0A024RBF6 Q6IBH6 135 142 RPL26;hCG_26523 60S ribosomal protein L26 yes no 2 1.6785E-39 206.78 1 1 0.67512 0.6779 44.447 2 Median 0.78703 0.92823 NaN 1 0 Median 0.57913 0.49508 NaN 1 0 Median 408280000 228060000 180220000 396210000 220500000 175710000 12071000 7563000 4507800 15207 1629 15617 40351;40352 63324;63325;63326;63327 63324 4 YKPLDLRPK QTQKENLRKFYKGKKYKPLDLRPKKTRAMR FYKGKKYKPLDLRPKKTRAMRRRLNKHEEN K Y K P K K 0 1 0 1 0 0 0 0 0 0 2 2 0 0 2 0 0 0 1 0 0 0 9 2 1128.6655 P42766 P42766 78 86 RPL35 60S ribosomal protein L35 yes yes 3 0.0063813 63.816 1 0.53553 0.6392 NaN 1 Median 0.53553 0.6392 NaN 1 0 Median NaN NaN NaN 0 0 Median 45582000 27833000 17749000 45582000 27833000 17749000 0 0 0 15208 1567 15618 40353 63328 63328 1 YLAEFATGNDR ESKVFYYKMKGDYHRYLAEFATGNDRKEAA DYHRYLAEFATGNDRKEAAENSLVAYKAAS R Y L D R K 2 1 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 11 0 1255.5833 V9HW98;P62258;G9K389;G9K388;B7ZA86;K7EM20;B3KT37 V9HW98 131 141 HEL2;YWHAE;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion 14-3-3 protein epsilon yes no 2 0.021612 52.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15209 1637 15619 40354 63329 63329 1 YLAEVAAGDDKK ESKVFYLKMKGDYYRYLAEVAAGDDKKGIV YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE R Y L K K G 3 0 0 2 0 0 1 1 0 0 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1278.6456 D0PNI1;P63104;B0AZS6;E7EX29;B7Z2E6;H0YB80 D0PNI1 128 139 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.00074036 83.869 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15210 1182 15620 40355 63330 63330 1 YLAEVACGDDRK ESKVFYLKMKGDYFRYLAEVACGDDRKQTI YFRYLAEVACGDDRKQTIDNSQGAYQEAFD R Y L R K Q 2 1 0 2 1 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 12 1 1395.6453 P27348;Q53S41;B4DMT8;B4DY04;E9PG15 P27348 128 139 YWHAQ 14-3-3 protein theta yes no 2 0.00039441 85.958 2 2.417 2.6068 NaN 1 Median 2.417 2.6068 NaN 1 0 Median NaN NaN NaN 0 0 Median 11012000 4318600 6693700 11012000 4318600 6693700 0 0 0 15211 1523 15621 40356;40357 63331;63332 63331 2 YLAFLR EGINISGNFYRNKLKYLAFLRKRMNTNPSR GNFYRNKLKYLAFLRKRMNTNPSRGPYHFR K Y L L R K 1 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 6 0 781.44866 Q53H34;P40429;Q9BSQ6;Q5QTS3;M0QYS1;B4DNC8 Q53H34 54 59 RPL13A 60S ribosomal protein L13a yes no 2 0.049101 74.849 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15212 1558 15622 40358 63333 63333 1 YLAIAPPIIK IIIGQESITYHNGDKYLAIAPPIIKQSTIV HNGDKYLAIAPPIIKQSTIVCHNRVDPNGS K Y L I K Q 2 0 0 0 0 0 0 0 0 3 1 1 0 0 2 0 0 0 1 0 0 0 10 0 1097.6849 Q16531;B4DSA8;F5GY55;B7Z2A1 Q16531 245 254 DDB1 DNA damage-binding protein 1 yes no 2 0.001121 75.854 2 2 0.95092 0.91238 13.146 4 Median 0.71943 0.81318 2.8025 2 0 Median 1.2353 1.0184 2.0693 2 0 Median 298010000 162870000 135140000 225190000 130510000 94680000 72820000 32356000 40464000 15213 1770 15623 40359;40360;40361;40362 63334;63335;63336;63337;63338;63339;63340;63341;63342;63343 63335 10 YLAPSGPSGTLK EFRSGKVAFRDCEGRYLAPSGPSGTLKAGK EGRYLAPSGPSGTLKAGKATKVGKDELFAL R Y L L K A 1 0 0 0 0 0 0 2 0 0 2 1 0 0 2 2 1 0 1 0 0 0 12 0 1189.6343 B3KTA3;Q16658 B3KTA3 209 220 FSCN1 Fascin yes no 2 4.9287E-05 94.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32475000 0 32475000 32475000 0 32475000 0 0 0 15214 942 15624 40363 63344 63344 1 YLASGSGDTTVR HSEAVISVAFSPTGKYLASGSGDTTVRFWD TGKYLASGSGDTTVRFWDLSTETPHFTCKG K Y L V R F 1 1 0 1 0 0 0 2 0 0 1 0 0 0 0 2 2 0 1 1 0 0 12 0 1225.5939 B4E074;Q9NVX2;B4E303 B4E074 128 139 NLE1 Notchless protein homolog 1 yes no 2 2.4328E-05 101.38 2 1 1.31 1.5549 18.921 3 Plateau 1.3325 1.4373 17.088 2 0 Median 1.31 1.1169 NaN 1 0 Median 71622000 31267000 40355000 66043000 28967000 37076000 5579500 2300600 3278900 15215 1060 15625 40364;40365;40366 63345;63346;63347;63348;63349;63350 63345 6 YLATCADDR HSGNISCMDFSSNGKYLATCADDRTIRIWS FSSNGKYLATCADDRTIRIWSTKDFLQREH K Y L D R T 2 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1083.4655 E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;A0A0S2Z5C1;A0A087WXC6;F8WDI9 E9PF19 68 76 TBL2 Transducin beta-like protein 2 yes no 2 0.0019814 78.334 1 1 0.74164 0.6968 6.767 2 Median 0.71722 0.73095 NaN 1 0 Median 0.76688 0.66424 NaN 1 0 Median 11900000 6749600 5150400 9924900 5734000 4190900 1975100 1015600 959450 15216 582 15626 40367;40368 63351;63352 63351 2 YLCAGAVDFYNNLENFNVDK PVATIFTTHATLLGRYLCAGAVDFYNNLEN AVDFYNNLENFNVDKEAGERQIYHRYCMER R Y L D K E 2 0 4 2 1 0 1 1 0 0 2 1 0 2 0 0 0 0 2 2 0 0 20 0 2365.0685 P13807;Q53ER0;B7Z806;B7Z6I6;B7Z8P0 P13807 212 231 GYS1 Glycogen [starch] synthase, muscle yes no 2 9.1221E-05 44.44 1 2 0.51063 0.40396 9.566 2 Median NaN NaN NaN 0 0 Median 0.51063 0.40396 9.566 2 0 Median 38869000 27130000 11738000 5915600 5915600 0 32953000 21215000 11738000 15217 1479 15627 40369;40370;40371 63353;63354;63355;63356 63354 4 YLCECQFDDNLK GYLEMSVECKLALLKYLCECQFDDNLKFKN LLKYLCECQFDDNLKFKNIINEEDADTMRL K Y L L K F 0 0 1 2 2 1 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1603.6647 Q96T23;H0YER1;Q05DG0;H7C306 Q96T23 125 136 RSF1 Remodeling and spacing factor 1 yes no 2 0.00054854 69.349 2 1 0.65652 0.57979 27.579 2 Median 0.48082 0.47706 NaN 1 0 Median 0.89641 0.70463 NaN 1 0 Median 10445000 6461500 3983800 8174700 5220700 2954000 2270500 1240800 1029800 15218 1991 15628 40372;40373;40374 63357;63358;63359;63360;63361 63359 5 YLCLLASDAEVPEPCLPR RVSGQVQALQNHYRKYLCLLASDAEVPEPC LLASDAEVPEPCLPRQYWEALGAPEALREQ K Y L P R Q 2 1 0 1 2 0 2 0 0 0 4 0 0 0 3 1 0 0 1 1 0 0 18 0 2102.0176 Q59E91;Q4G0F4;O00411;B4DZE5 Q59E91 375 392 POLRMT DNA-directed RNA polymerase;DNA-directed RNA polymerase, mitochondrial yes no 2 0.052358 21.55 1 2.1898 1.936 NaN 1 Median NaN NaN NaN 0 0 Median 2.1898 1.936 NaN 1 0 Median 1147700 453870 693860 0 0 0 1147700 453870 693860 15219 1363 15629 40375 63362 63362 1 YLDEDTIYHLQPSGR DALKEKVIKAVVPAKYLDEDTIYHLQPSGR YLDEDTIYHLQPSGRFVIGGPQGDAGLTGR K Y L G R F 0 1 0 2 0 1 1 1 1 1 2 0 0 0 1 1 1 0 2 0 0 0 15 0 1805.8584 A0A140VJP5;P31153;B4DEX8 A0A140VJP5 235 249 MAT2A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase yes no 3 6.7813E-05 73.983 2 2 1.5667 2.1212 32.818 4 Linear 1.8215 2.0151 5.4826 2 0 Median 1.3538 1.1447 1.5722 2 0 Median 113140000 40051000 73085000 98450000 34731000 63719000 14685000 5320000 9365300 15220 606 15630 40376;40377;40378;40379 63363;63364;63365;63366;63367 63365 5 YLDFSSIITEVR QASDTSVVLSMDNNRYLDFSSIITEVRARY NNRYLDFSSIITEVRARYEEIARSSKAEAE R Y L V R A 0 1 0 1 0 0 1 0 0 2 1 0 0 1 0 2 1 0 1 1 0 0 12 0 1441.7453 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4;B4DQ49 CON__Q8N1N4-2 275 286 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.00041768 89.171 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6560300 6560300 0 6560300 6560300 0 0 0 0 + 15221 1178 15631 40380;40381 63368;63369 63368 2 YLDLILNDFVR LHFGLKDKETRYRQRYLDLILNDFVRQKFI YRQRYLDLILNDFVRQKFIIRSKIITYIRS R Y L V R Q 0 1 1 2 0 0 0 0 0 1 3 0 0 1 0 0 0 0 1 1 0 0 11 0 1379.7449 Q15046;J3KRL2;H3BPV7;Q6ZTI3 Q15046 231 241 KARS Lysine--tRNA ligase yes no 2 7.4243E-05 98.249 2 1.7343 1.7611 8.7874 2 Median 1.7343 1.7611 8.7874 2 0 Median NaN NaN NaN 0 0 Median 12973000 5033600 7939300 12973000 5033600 7939300 0 0 0 15222 1749 15632 40382;40383 63370;63371 63370 2 YLDSIPPGQYMDSSLVK RLYLIFEFLSMDLKKYLDSIPPGQYMDSSL DSIPPGQYMDSSLVKSYLYQILQGIVFCHS K Y L V K S 0 0 0 2 0 1 0 1 0 1 2 1 1 0 2 3 0 0 2 1 0 0 17 0 1911.9288 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;A0A024QZJ8;E5RIU6;B7Z3D6 A0A024QZP7 90 106 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 0.00032785 57.175 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9883800 0 9883800 9883800 0 9883800 0 0 0 15223 25 15633 40384;40385;40386 63372;63373;63374 63374 14 3 YLDWAYR LLAVIGADSVTLKNKYLDWAYRSGGYKKAR DSVTLKNKYLDWAYRSGGYKKARAVFKSLQ K Y L Y R S 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 0 7 0 985.46577 B3KQ21;Q9NYH9;B3KX32;Q9P1J8 B3KQ21 480 486 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.027742 73.039 2 0.86815 0.90985 6.3399 2 Median 0.86815 0.90985 6.3399 2 0 Median NaN NaN NaN 0 0 Median 47145000 20418000 26727000 47145000 20418000 26727000 0 0 0 15224 925 15634 40387;40388 63375;63376 63375 2 YLEEIATQMR QGGSILGTKRVLPGKYLEEIATQMRTHSIN VLPGKYLEEIATQMRTHSINALLIIGGFEA K Y L M R T 1 1 0 0 0 1 2 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 10 0 1252.6122 Q01813;Q8WTZ9;O14943;H0Y3Y3 Q01813 487 496 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0056941 56.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15225 1677 15635 40389 63377 63377 1479 1 YLEGTGSVAGVVLLPEGHK RLAAVDVSARAEVRRYLEGTGSVAGVVLLP TGSVAGVVLLPEGHKKSFFQAATEHLLPMG R Y L H K K 1 0 0 0 0 0 2 4 1 0 3 1 0 0 1 1 1 0 1 3 0 0 19 0 1925.0258 A0A075B730;A0A087X1U6;P58107 A0A075B730 255 273 EPPK1 Epiplakin no no 3 0.034276 16.228 1 1 2.4321 2.2039 13.711 2 Median 2.4635 2.4283 NaN 1 0 Median 2.4011 2.0003 NaN 1 0 Median 21255000 6256800 14998000 19489000 5831100 13658000 1766600 425740 1340800 15226 397;1622 15636 40390;40391 63378;63379 63378 2 YLEGTSCIAGVLVPAK RSTTQELMEDDRVKRYLEGTSCIAGVLVPA LEGTSCIAGVLVPAKDQPGRQEKMSIYQAM R Y L A K D 2 0 0 0 1 0 1 2 0 1 2 1 0 0 1 1 1 0 1 2 0 0 16 0 1676.8807 A0A075B730;A0A087X1U6;P58107 A0A075B730 2194 2209 EPPK1 Epiplakin no no 2 1.8454E-08 124.42 2 2 2.1356 1.6872 26.33 3 Median 2.2899 2.468 NaN 1 0 Median 2.0042 1.5848 8.8551 2 0 Median 65206000 14456000 50751000 57102000 11643000 45459000 8104600 2812600 5292000 15227 397;1622 15637 40392;40393;40394;40395 63380;63381;63382;63383;63384;63385;63386;63387 63380 8 YLELLGYR WSFLKVNFEDDSRGKYLELLGYRKEDLGKK EDDSRGKYLELLGYRKEDLGKKHIKEEKEE K Y L Y R K 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 2 0 0 0 8 0 1025.5546 H7BXG7;A0A1S5UZ19;A0A024RDH6;A0A024RDD3;D6REX3;O94979;H0Y9K1;H0Y8V7;H0YAB3;D6RHZ5 H7BXG7 261 268 SEC31A;SEC31L1 Protein transport protein Sec31A yes no 2 0.0066879 81.297 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15228 384 15638 40396;40397 63388;63389 63388 2 YLENQTFR VVMVHEPKQKVDLTRYLENQTFRFDYAFDD QKVDLTRYLENQTFRFDYAFDDSAPNEMVY R Y L F R F 0 1 1 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 8 0 1069.5193 B0AZS5;O00139;B4DM85;D6R9M0 B0AZS5 222 229 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A yes no 2 0.014638 62.546 1 0.82693 0.86375 NaN 1 Median 0.82693 0.86375 NaN 1 0 Median NaN NaN NaN 0 0 Median 38738000 21496000 17242000 38738000 21496000 17242000 0 0 0 15229 804 15639 40398 63390 63390 1 YLFIFSVANMR QNLIEELRKCVDTYKYLFIFSVANMRNSKL DTYKYLFIFSVANMRNSKLKDIRNAWKHSR K Y L M R N 1 1 1 0 0 0 0 0 0 1 1 0 1 2 0 1 0 0 1 1 0 0 11 0 1359.7009 A0A024RAE1;Q9UKD2;B4DHZ2 A0A024RAE1 39 49 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 0.00015467 87.639 2 2 1.6368 1.6396 76.853 3 Median 1.6869 1.6993 5.0654 2 0 Median 0.52152 0.44958 NaN 1 0 Median 39221000 16804000 22418000 33810000 12425000 21385000 5411000 4378700 1032300 15230 302 15640 40399;40400;40401;40402 63391;63392;63393;63394;63395;63396;63397 63393 217 7 YLFLGDYVDR LMKLFEVGGSPANTRYLFLGDYVDRGYFSI PANTRYLFLGDYVDRGYFSIECVLYLWALK R Y L D R G 0 1 0 2 0 0 0 1 0 0 2 0 0 1 0 0 0 0 2 1 0 0 10 0 1259.6186 E9PPC8;E9PK68;H0YB02;G3V111;B7Z781;E7ETC2;Q5F2F8;A0A0S2Z4B5;A0A0S2Z4C6;P48454;Q08209;P16298 E9PPC8 63 72 PPP3CA;PPP3CC;PPP3CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform;Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform yes no 2 0.0048352 64.04 1 2 1.246 1.3075 NaN 1 Median 1.246 1.3075 NaN 1 0 Median NaN NaN NaN 0 0 Median 16511000 5713100 10797000 12013000 5713100 6300400 4497100 0 4497100 15231 561 15641 40403;40404;40405 63398;63399;63400 63398 3 YLFLNAIANQLR DIFQNLAVDLDTEGRYLFLNAIANQLRYPN EGRYLFLNAIANQLRYPNSHTHYFSCTMLY R Y L L R Y 2 1 2 0 0 1 0 0 0 1 3 0 0 1 0 0 0 0 1 0 0 0 12 0 1434.7983 A5YKK6;B3KS60;B7Z6X2;B3KPW6;B4DYL7 A5YKK6 2264 2275 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.0017142 60.436 1 1 2.5124 2.7092 NaN 1 Median 2.5124 2.7092 NaN 1 0 Median NaN NaN NaN 0 0 Median 3117400 874440 2243000 2832900 874440 1958400 284540 0 284540 15232 676 15642 40406;40407 63401;63402 63401 2 YLFPVPK GFSSRLGKRVSDILRYLFPVPKDDSHRVIT KRVSDILRYLFPVPKDDSHRVITFANQDDY R Y L P K D 0 0 0 0 0 0 0 0 0 0 1 1 0 1 2 0 0 0 1 1 0 0 7 0 862.49528 H0Y714;Q96G21;B8ZZ47;E7ENR5;B9A008 H0Y714 194 200 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.03153 66.994 2 0.89662 1.0279 2.7143 2 Median 0.89662 1.0279 2.7143 2 0 Median NaN NaN NaN 0 0 Median 335800000 175170000 160640000 335800000 175170000 160640000 0 0 0 15233 1286 15643 40408;40409 63403;63404;63405 63403 3 YLGEGPR TAAFIRVVGSEFVQKYLGEGPRMVRDVFRL VGSEFVQKYLGEGPRMVRDVFRLAKENAPA K Y L P R M 0 1 0 0 0 0 1 2 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 0 790.39735 A8K2M0;P43686 A8K2M0 239 245 PSMC4 26S protease regulatory subunit 6B yes no 2 0.034211 62.714 1 2.3489 2.4029 NaN 1 Median 2.3489 2.4029 NaN 1 0 Median NaN NaN NaN 0 0 Median 14551000 3836100 10715000 14551000 3836100 10715000 0 0 0 15234 710 15644 40410 63406 63406 1 YLGFGTPSNLGK FNGLDRIISRRKNEKYLGFGTPSNLGKGRR NEKYLGFGTPSNLGKGRRAAAAADLANRSG K Y L G K G 0 0 1 0 0 0 0 3 0 0 2 1 0 1 1 1 1 0 1 0 0 0 12 0 1252.6452 Q9H072;A0A024R5X7;O76031 Q9H072 438 449 DKFZp586J151;CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2 0.0009625 63.216 2 1.8585 1.9533 NaN 1 Median 1.8585 1.9533 NaN 1 0 Median NaN NaN NaN 0 0 Median 23453000 9229400 14223000 23453000 9229400 14223000 0 0 0 15235 191 15645 40411;40412 63407;63408;63409 63408 3 YLGGSMDLSTFDFR SPSGKKFRSKPQLARYLGGSMDLSTFDFRT RYLGGSMDLSTFDFRTGKMLMSKMNKSRQR R Y L F R T 0 1 0 2 0 0 0 2 0 0 2 0 1 2 0 2 1 0 1 0 0 0 14 0 1607.729 O95983 O95983 52 65 MBD3 Methyl-CpG-binding domain protein 3 yes yes 2 0.00094058 65.5 2 1.0158 1.0323 5.666 2 Median 1.0158 1.0323 5.666 2 0 Median NaN NaN NaN 0 0 Median 25841000 11803000 14038000 25841000 11803000 14038000 0 0 0 15236 1432 15646 40413;40414 63410;63411 63411 1123 1 YLGLLENLR QPGRFDEVLIRHQVKYLGLLENLRVRRAGF IRHQVKYLGLLENLRVRRAGFAYRRKYEAF K Y L L R V 0 1 1 0 0 0 1 1 0 0 4 0 0 0 0 0 0 0 1 0 0 0 9 0 1089.6182 F5H6E2;B7Z3E5;O00159;B7Z9C0;A1L180;D3DTH7 F5H6E2 624 632 MYO1C Unconventional myosin-Ic no no 2 0.0017345 81.548 2 2 1.3875 1.3102 7.1832 4 Median 1.1584 1.2199 3.899 2 0 Median 1.6473 1.3728 0.38717 2 0 Median 55698000 24864000 30834000 46295000 20351000 25943000 9403900 4513000 4890900 15237 1088;1189 15647 40415;40416;40417;40418 63412;63413;63414;63415;63416;63417;63418 63415 7 YLGLLENVR AAHIFNEALVCHQIRYLGLLENVRVRRAGY VCHQIRYLGLLENVRVRRAGYAFRQAYEPC R Y L V R V 0 1 1 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 1 1 0 0 9 0 1075.6026 E9PDF6;B0I1S9;O43795 E9PDF6 618 626 MYO1B Unconventional myosin-Ib no no 2 0.0060214 65.246 1 1.8266 1.8557 NaN 1 Median 1.8266 1.8557 NaN 1 0 Median NaN NaN NaN 0 0 Median 18314000 5248000 13066000 18314000 5248000 13066000 0 0 0 15238 805 15648 40419 63419 63419 1 YLGNTVDLSSFDFR SPSGKKFRSKPQLARYLGNTVDLSSFDFRT RYLGNTVDLSSFDFRTGKMMPSKLQKNKQR R Y L F R T 0 1 1 2 0 0 0 1 0 0 2 0 0 2 0 2 1 0 1 1 0 0 14 0 1632.7784 Q9UBB5;X6RBL6;A0A024R2B8 Q9UBB5 196 209 MBD2 Methyl-CpG-binding domain protein 2 yes no 2 1.9079E-06 107.06 1 2 1.5253 1.2697 31.318 3 Median 0.68947 0.76468 NaN 1 0 Median 1.5916 1.3116 4.5901 2 0 Median 73139000 37352000 35786000 42711000 25863000 16848000 30428000 11490000 18938000 15239 2096 15649 40420;40421;40422 63420;63421;63422;63423;63424;63425;63426 63422 7 YLGPACDLTLFDFK SPTGDRIRSKVELTRYLGPACDLTLFDFKQ RYLGPACDLTLFDFKQGILCYPAPKAHPVA R Y L F K Q 1 0 0 2 1 0 0 1 0 0 3 1 0 2 1 0 1 0 1 0 0 0 14 0 1658.8014 A0A0A0MS90;A8K654;B4DI41;Q9UIS9;B4DUR3 A0A0A0MS90 52 65 MBD1 Methyl-CpG-binding domain protein 1 yes no 2 7.4152E-05 89.403 2 0.73952 0.74597 1.7417 2 Median 0.73952 0.74597 1.7417 2 0 Median NaN NaN NaN 0 0 Median 14237000 7772300 6464900 14237000 7772300 6464900 0 0 0 15240 477 15650 40423;40424 63427;63428;63429;63430 63428 4 YLGYLEQLLR VEQKHIQKEDVPSERYLGYLEQLLRLKKYK VPSERYLGYLEQLLRLKKYKVPQLEIVPNS R Y L L R L 0 1 0 0 0 1 1 1 0 0 4 0 0 0 0 0 0 0 2 0 0 0 10 0 1266.6972 CON__P02662 CON__P02662 91 100 yes yes 2 0.0034089 76.679 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32832000 32832000 0 32832000 32832000 0 0 0 0 + 15241 1151 15651 40425;40426 63431;63432 63431 2 YLHENLPIPQR KDHVVSDFSEHGSLKYLHENLPIPQRNTN_ GSLKYLHENLPIPQRNTN____________ K Y L Q R N 0 1 1 0 0 1 1 0 1 1 2 0 0 0 2 0 0 0 1 0 0 0 11 0 1378.7357 P54886 P54886 782 792 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 0.027686 38.478 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17490000 0 17490000 17490000 0 17490000 0 0 0 15242 1611 15652 40427 63433 63433 1 YLHNFQGK GLISYRSYWKEVLLRYLHNFQGKEISIKEI WKEVLLRYLHNFQGKEISIKEISQETAVNP R Y L G K E 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 0 0 0 1 0 0 0 8 0 1005.5032 O95251;E7EUP3;B7Z4D9;B3KVJ2;B4DJ40;B4DG18;B4DGH8 O95251 530 537 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 0.022631 64.757 1 0.70256 0.74552 NaN 1 Median 0.70256 0.74552 NaN 1 0 Median NaN NaN NaN 0 0 Median 15770000 10063000 5706900 15770000 10063000 5706900 0 0 0 15243 1422 15653 40428 63434;63435 63435 2 YLIANATNPESK ELRSICTTVLELLDKYLIANATNPESKVFY LDKYLIANATNPESKVFYLKMKGDYFRYLA K Y L S K V 2 0 2 0 0 0 1 0 0 1 1 1 0 0 1 1 1 0 1 0 0 0 12 0 1319.6721 P27348;Q53S41;B4DMT8;E9PG15 P27348 104 115 YWHAQ 14-3-3 protein theta yes no 2 0.017556 41.399 1 1.1197 0.88779 NaN 1 Median NaN NaN NaN 0 0 Median 1.1197 0.88779 NaN 1 0 Median 2005100 870500 1134600 0 0 0 2005100 870500 1134600 15244 1523 15654 40429 63436 63436 1 YLIATSEQPIAALHR GKGSEKSDDNSYDEKYLIATSEQPIAALHR YLIATSEQPIAALHRDEWLRPEDLPIKYAG K Y L H R D 3 1 0 0 0 1 1 0 1 2 2 0 0 0 1 1 1 0 1 0 0 0 15 0 1681.9152 Q0VGA5;Q53HA4;Q5T5C7;P49591 Q0VGA5 267 281 SARS Serine--tRNA ligase, cytoplasmic yes no 3 6.9085E-05 55.66 2 1.4712 1.4837 NaN 1 Median 1.4712 1.4837 NaN 1 0 Median NaN NaN NaN 0 0 Median 19091000 3585600 15505000 19091000 3585600 15505000 0 0 0 15245 1584 15655 40430;40431 63437;63438 63438 2 YLIGAAPIAYGLPVSLR LLYYVNQARQAPRLKYLIGAAPIAYGLPVS IGAAPIAYGLPVSLR_______________ K Y L L R - 3 1 0 0 0 0 0 2 0 2 3 0 0 0 2 1 0 0 2 1 0 0 17 0 1773.0189 Q14674 Q14674 2104 2120 ESPL1 Separin yes yes 2 0.00011314 58.674 2 0.83916 0.89167 5.2391 2 Median 0.83916 0.89167 5.2391 2 0 Median NaN NaN NaN 0 0 Median 7502700 4132700 3370000 7502700 4132700 3370000 0 0 0 15246 1737 15656 40432;40433 63439;63440 63439 2 YLIGELVSSK WENIATILEAKCALKYLIGELVSSKIQVSK KCALKYLIGELVSSKIQVSKLESSLKQSKT K Y L S K I 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 2 0 0 1 1 0 0 10 0 1107.6176 Q59HG1;O95239;B4DYE2;B3KNC0;Q2VIQ3 Q59HG1 872 881 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.00049973 72.643 3 2 1.5097 1.1939 10.583 3 Median 0.91919 1.0366 NaN 1 0 Median 1.526 1.2339 4.6515 2 0 Median 186540000 69992000 116550000 164160000 61200000 102960000 22381000 8792300 13589000 15247 1803 15657 40434;40435;40436;40437;40438 63441;63442;63443;63444;63445;63446;63447;63448 63444 8 YLINGVNANNTR EITVTRQVVIGGRNKYLINGVNANNTRVQD RNKYLINGVNANNTRVQDLFCSVGLNVNNP K Y L T R V 1 1 4 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 1 1 0 0 12 0 1347.6895 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 115 126 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.9047E-12 144.77 1 1 1.225 1.1981 39.176 2 Median 0.79803 0.9082 NaN 1 0 Median 1.8805 1.5805 NaN 1 0 Median 141220000 72548000 68667000 114420000 62753000 51664000 26798000 9795400 17003000 15248 69 15658 40439;40440 63449;63450;63451 63449 3 YLLEQLK KEEKCCRKDCLKLMKYLLEQLKERFKDKKH KDCLKLMKYLLEQLKERFKDKKHLDKFSSY K Y L L K E 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 7 0 905.52222 Q8N884 Q8N884 415 421 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.027742 73.039 2 1.6555 1.886 4.0608 2 Median 1.6555 1.886 4.0608 2 0 Median NaN NaN NaN 0 0 Median 308330000 123430000 184900000 308330000 123430000 184900000 0 0 0 15249 1914 15659 40441;40442 63452;63453;63454 63452 3 YLLGDMEGR STIVCHNRVDPNGSRYLLGDMEGRLFMLLL DPNGSRYLLGDMEGRLFMLLLEKEEQMDGT R Y L G R L 0 1 0 1 0 0 1 2 0 0 2 0 1 0 0 0 0 0 1 0 0 0 9 0 1052.4961 Q16531;B4DSA8;F5GY55;B7Z2A1 Q16531 271 279 DDB1 DNA damage-binding protein 1 yes no 2 0.0020968 71.692 2 1.0103 1.0335 NaN 1 Median 1.0103 1.0335 NaN 1 0 Median NaN NaN NaN 0 0 Median 57841000 15470000 42371000 57841000 15470000 42371000 0 0 0 15250 1770 15660 40443;40444 63455;63456 63456 1641 2 YLMEEDEDAYK HRKHIMGQNVADYMRYLMEEDEDAYKKQFS DYMRYLMEEDEDAYKKQFSQYIKNSVTPDM R Y L Y K K 1 0 0 2 0 0 3 0 0 0 1 1 1 0 0 0 0 0 2 0 0 0 11 0 1404.5755 A2RUM7;P46777;Q59GX9;B3KTM6 A2RUM7 210 220 RPL5 60S ribosomal protein L5 yes no 2 2.4365E-06 110.76 2 1 1.2949 1.4742 20.087 3 Plateau 1.2941 1.4685 1.4679 2 0 Median 1.2426 1.0375 NaN 1 0 Median 292150000 131740000 160410000 290460000 130960000 159500000 1688900 778130 910780 15251 653 15661;15662 40445;40446;40447 63457;63458;63459;63460;63461 63459 511 5 YLMEEDEDAYKK HRKHIMGQNVADYMRYLMEEDEDAYKKQFS YMRYLMEEDEDAYKKQFSQYIKNSVTPDMM R Y L K K Q 1 0 0 2 0 0 3 0 0 0 1 2 1 0 0 0 0 0 2 0 0 0 12 1 1532.6705 A2RUM7;P46777;Q59GX9;B3KTM6 A2RUM7 210 221 RPL5 60S ribosomal protein L5 yes no 2;3 2.7257E-48 188.96 4 6 1.2026 1.0369 40.676 10 Median 1.2613 1.4788 2.4609 4 0 Median 0.77674 0.66231 26.087 6 0 Median 628920000 278040000 350870000 576240000 251130000 325110000 52678000 26916000 25761000 15252 653 15663;15664 40448;40449;40450;40451;40452;40453;40454;40455;40456;40457 63462;63463;63464;63465;63466;63467;63468;63469;63470;63471;63472;63473;63474 63468 511 13 YLMGETQLCTTR AALRGRIQLREQLPRYLMGETQLCTTRCVL LPRYLMGETQLCTTRCVLKELETLGKDLYG R Y L T R C 0 1 0 0 1 1 1 1 0 0 2 0 1 0 0 0 3 0 1 0 0 0 12 0 1471.6799 Q9BRU9;G3XAM4;E5RGP0 Q9BRU9 52 63 UTP23 rRNA-processing protein UTP23 homolog yes no 2 0.00010138 84.17 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4711300 4711300 0 4711300 4711300 0 0 0 0 15253 1999 15665 40458;40459 63475;63476 63476 1837 2 YLNEQLYSGPSSAAQR LRARMAQRLDGARFRYLNEQLYSGPSSAAQ LNEQLYSGPSSAAQRLFQEDPEAFLLYHRG R Y L Q R L 2 1 1 0 0 2 1 1 0 0 2 0 0 0 1 3 0 0 2 0 0 0 16 0 1782.8537 O43159;E9PPY3 O43159 253 268 RRP8 Ribosomal RNA-processing protein 8 yes no 2 6.03E-12 114.72 2 0.80953 0.83808 NaN 1 Median 0.80953 0.83808 NaN 1 0 Median NaN NaN NaN 0 0 Median 21764000 12874000 8890300 21764000 12874000 8890300 0 0 0 15254 1380 15666 40460;40461 63477;63478 63478 2 YLNFFTK TIEMNEPVQLTFALRYLNFFTKATPLSSTV VQLTFALRYLNFFTKATPLSSTVTLSMSAD R Y L T K A 0 0 1 0 0 0 0 0 0 0 1 1 0 2 0 0 1 0 1 0 0 0 7 0 931.48035 Q6FI35;Q6FHF5;P12004 Q6FI35 211 217 PCNA Proliferating cell nuclear antigen yes no 2 0.028306 72.138 2 0.67939 0.7636 0.74422 2 Median 0.67939 0.7636 0.74422 2 0 Median NaN NaN NaN 0 0 Median 194040000 113020000 81022000 194040000 113020000 81022000 0 0 0 15255 1473 15667 40462;40463 63479;63480;63481 63480 3 YLNPLQTDAAENNVCDINSVHGLFATGTIEGR GASSEVYRLNLEQGRYLNPLQTDAAENNVC NSVHGLFATGTIEGRVECWDPRTRNRVGLL R Y L G R V 3 1 4 2 1 1 2 3 1 2 3 0 0 1 1 1 3 0 1 2 0 0 32 0 3488.663 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 168 199 NOL10 Nucleolar protein 10 yes no 3 1.3404E-78 162 2 2 1.1358 1.1401 14.299 4 Median 0.86753 0.98205 10.797 2 0 Median 1.4155 1.2273 0.1043 2 0 Median 272040000 125570000 146470000 139920000 74481000 65437000 132130000 51091000 81036000 15256 2000 15668 40464;40465;40466;40467 63482;63483;63484;63485;63486;63487;63488;63489;63490 63487 9 YLNTNPVGGLLEYAR SMMPDKVRKIGELVRYLNTNPVGGLLEYAR YLNTNPVGGLLEYARSHGFAAEFKLVDQSG R Y L A R S 1 1 2 0 0 0 1 2 0 0 3 0 0 0 1 0 1 0 2 1 0 0 15 0 1678.8679 A0A024DAK3;Q59EC0;P55265;D3DV75;H0YCK3;B7Z8Y3 A0A024DAK3 722 736 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 5.3278E-15 125.54 2 2 1.5595 1.4575 26.356 4 Median 1.7651 1.8131 0.97181 2 0 Median 1.3699 1.1503 3.5749 2 0 Median 52365000 19805000 32560000 41315000 15351000 25964000 11050000 4454600 6595800 15257 5 15669 40468;40469;40470;40471 63491;63492;63493;63494;63495 63492 4 YLPDTLLLEECGLLR VDTLDMVFLDHWKDRYLPDTLLLEECGLLR YLPDTLLLEECGLLRRGTVLLADNVICPGA R Y L L R R 0 1 0 1 1 0 2 1 0 0 6 0 0 0 1 0 1 0 1 0 0 0 15 0 1803.9441 B8XPJ7;B8XPJ8;A0A140VJG8;P21964;E7EMS6 B8XPJ7 147 161 COMT Catechol O-methyltransferase yes no 2 0.00022107 66.267 2 1.7546 1.771 2.6584 2 Median 1.7546 1.771 2.6584 2 0 Median NaN NaN NaN 0 0 Median 30203000 10252000 19951000 30203000 10252000 19951000 0 0 0 15258 601 15670 40472;40473 63496;63497;63498 63498 3 YLPELMAEK PPSATASVKMEPENKYLPELMAEKDSLDPS MEPENKYLPELMAEKDSLDPSFTHAMQLLT K Y L E K D 1 0 0 0 0 0 2 0 0 0 2 1 1 0 1 0 0 0 1 0 0 0 9 0 1092.5525 B4DDX2;Q07666;B4E043;B3KTS3;O75525;Q5VWX1 B4DDX2 83 91 KHDRBS1;KHDRBS3;KHDRBS2 KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 3;KH domain-containing, RNA-binding, signal transduction-associated protein 2 yes no 2 0.020597 41.029 1 2.091 2.1076 NaN 1 Median 2.091 2.1076 NaN 1 0 Median NaN NaN NaN 0 0 Median 27232000 10486000 16746000 27232000 10486000 16746000 0 0 0 15259 962 15671 40474 63499 63499 776 1 YLPHSAGR ISLQDYIAVKEKYAKYLPHSAGRYAAKRFR VKEKYAKYLPHSAGRYAAKRFRKAQCPIVE K Y L G R Y 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 0 0 1 0 0 0 8 0 899.46135 M0R0F0;Q53G25;A0A024R4Q8;P46782;M0R0R2 M0R0F0 48 55 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2;3 0.00045359 132.09 2 1.1032 1.2628 3.7478 2 Median 1.1032 1.2628 3.7478 2 0 Median NaN NaN NaN 0 0 Median 315480000 148430000 167050000 315480000 148430000 167050000 0 0 0 15260 160 15672 40475;40476 63500;63501;63502;63503 63503 4 YLPISHPR VTARVIGGRDMKTFKYLPISHPRFVRTIPE RDMKTFKYLPISHPRFVRTIPELSVRPSEL K Y L P R F 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 1 0 0 0 8 0 981.5396 Q14690;B4DH82 Q14690 1103 1110 PDCD11 Protein RRP5 homolog yes no 2;3 0.017244 54.549 2 3 1.2531 1.2897 10.114 4 Linear 1.2074 1.2082 NaN 1 0 Median 1.4481 1.1931 10.633 3 0 Plateau 47165000 18843000 28322000 23506000 9156800 14349000 23658000 9686000 13972000 15261 1741 15673 40477;40478;40479;40480;40481 63504;63505;63506;63507;63508 63505 5 YLPPATQVVLISATLPHEILEMTNK MLNKGFKEQIYDVYRYLPPATQVVLISATL ISATLPHEILEMTNKFMTDPIRILVKRDEL R Y L N K F 2 0 1 0 0 1 2 0 1 2 4 1 1 0 3 1 3 0 1 2 0 0 25 0 2777.5037 A0A024R8W0;P38919 A0A024R8W0 207 231 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 3 1.8224E-09 52.927 1 2.721 3.0791 NaN 1 Median 2.721 3.0791 NaN 1 0 Median NaN NaN NaN 0 0 Median 101900000 25237000 76663000 101900000 25237000 76663000 0 0 0 15262 261 15674 40482 63509 63509 201 1 YLQGTGCIAGLLLPGSQER QATAKDVGSLASVQRYLQGTGCIAGLLLPG TGCIAGLLLPGSQERLSIYEARCKGLLRPG R Y L E R L 1 1 0 0 1 2 1 4 0 1 4 0 0 0 1 1 1 0 1 0 0 0 19 0 2032.0412 A0A075B730;A0A087X1U6;P58107 A0A075B730 580 598 EPPK1 Epiplakin no no 2 0.011315 24.72 1 1.8285 1.5568 NaN 1 Median NaN NaN NaN 0 0 Median 1.8285 1.5568 NaN 1 0 Median 2834000 841520 1992500 0 0 0 2834000 841520 1992500 15263 397;1622 15675 40483 63510 63510 1 YLQLAEELIRPER LDFLEEFQSSDGEIKYLQLAEELIRPERNT IKYLQLAEELIRPERNTLVVSFVDLEQFNQ K Y L E R N 1 2 0 0 0 1 3 0 0 1 3 0 0 0 1 0 0 0 1 0 0 0 13 1 1628.8886 Q14566;Q4ZG57;B4E0N7 Q14566 46 58 MCM6 DNA replication licensing factor MCM6 yes no 3 0.0039683 43.761 1 2 0.9138 0.81771 56.898 3 Median 1.9122 2.1624 NaN 1 0 Median 0.89387 0.80731 1.8099 2 0 Median 35240000 12976000 22265000 30697000 10546000 20151000 4543700 2429900 2113800 15264 1734 15676 40484;40485;40486 63511;63512;63513;63514 63511 4 YLRPPNTSLFVR ______________________________ MSRYLRPPNTSLFVRNVADDTRSEDLRREF R Y L V R N 0 2 1 0 0 0 0 0 0 0 2 0 0 1 2 1 1 0 1 1 0 0 12 1 1461.8092 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q6IQ42;R4GMP8 Q5JRI1 4 15 SRSF10;FUSIP1 Serine/arginine-rich splicing factor 10 yes no 3 0.001423 56.951 2 1 1.096 1.2627 39.241 3 Plateau 1.1278 1.2623 0.040653 2 0 Median 0.70404 0.63973 NaN 1 0 Median 118100000 54858000 63246000 111840000 51090000 60751000 6262900 3768000 2494900 15265 574 15677 40487;40488;40489 63515;63516;63517;63518;63519;63520 63517 6 YLSADSGDADDSDADLGSAVK NEEHNVETAEDSEIRYLSADSGDADDSDAD GDADDSDADLGSAVKQLQEFIPNIKDRATS R Y L V K Q 4 0 0 6 0 0 0 2 0 0 2 1 0 0 0 4 0 0 1 1 0 0 21 0 2070.8866 B4DZG2;A0A024R8C1;Q15361 B4DZG2 476 496 TTF1 Transcription termination factor 1 yes no 2 7.4935E-08 73.834 2 1.6853 1.7237 NaN 1 Median 1.6853 1.7237 NaN 1 0 Median NaN NaN NaN 0 0 Median 9353900 2660100 6693800 9353900 2660100 6693800 0 0 0 15266 247 15678 40490;40491 63521;63522 63521 1 YLSFEAEEK LRRFQASQGENLEGKYLSFEAEEKLAEWVL ENLEGKYLSFEAEEKLAEWVLTQREQQLPV K Y L E K L 1 0 0 0 0 0 3 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 9 0 1114.5183 Q7Z3K3;B4DSK8 Q7Z3K3 1022 1030 POGZ Pogo transposable element with ZNF domain yes no 2 0.023107 48.794 1 1.0975 1.1197 NaN 1 Median 1.0975 1.1197 NaN 1 0 Median NaN NaN NaN 0 0 Median 10429000 5768400 4660600 10429000 5768400 4660600 0 0 0 15267 1874 15679 40492 63523 63523 1 YLTEHPDPNNENIVGYNNK FFRFTADEARDLIQRYLTEHPDPNNENIVG HPDPNNENIVGYNNKKCWPRDARMRLMKHD R Y L N K K 0 0 5 1 0 0 2 1 1 1 1 1 0 0 2 0 1 0 2 1 0 0 19 0 2230.0291 Q6P2Q9 Q6P2Q9 1113 1131 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 1.5572E-12 105.39 2 2 0.84212 0.87524 15.79 4 Linear 0.84606 0.85093 6.8217 2 0 Median 0.83205 0.65613 5.0617 2 0 Median 64949000 34163000 30786000 55987000 29540000 26448000 8961900 4623200 4338800 15268 1854 15680 40493;40494;40495;40496 63524;63525;63526;63527;63528;63529 63525 6 YLTVAAIFR DSKNMMAACDPRHGRYLTVAAIFRGRMSMK DPRHGRYLTVAAIFRGRMSMKEVDEQMLNV R Y L F R G 2 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 0 1 1 0 0 9 0 1052.6019 Q13885;B2R6L0;Q9BVA1;A0A024QZU2;O43209;B7Z4N1;Q9UGA2 Q13885 310 318 TUBB2A;TUBB2B;DKFZp566F223 Tubulin beta-2A chain;Tubulin beta-2B chain yes no 2 0.0019261 89.142 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15269 1723 15681 40497 63530 63530 1 YLTVAAVFR DAKNMMAACDPRHGRYLTVAAVFRGRMSMK DPRHGRYLTVAAVFRGRMSMKEVDEQMLNV R Y L F R G 2 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 2 0 0 9 0 1038.5862 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q6LC01;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;A4UCT2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;P04350;B4DE77;B4DJ43 Q5JP53 292 300 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 2 1.1813E-05 125.25 5 2 1.3934 1.5213 24.969 6 Median 1.4814 1.7502 14.547 4 0 Median 1.2363 1.073 1.9196 2 0 Median 1728900000 695540000 1033400000 1589200000 631460000 957700000 139770000 64087000 75686000 15270 1452;1660;1441 15682 40498;40499;40500;40501;40502;40503;40504 63531;63532;63533;63534;63535;63536;63537;63538;63539;63540;63541;63542;63543;63544;63545;63546;63547 63538 17 YLTVATVFR DARNMMAACDPRHGRYLTVATVFRGPMSMK DPRHGRYLTVATVFRGPMSMKEVDEQMLAI R Y L F R G 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 1 2 0 0 9 0 1068.5968 Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3;Q9BUF5;B4DP54;K7ESM5;B3KS31;B4E386 Q9BUF5 310 318 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 4.7432E-06 116.73 3 1 1.4037 1.1739 NaN 1 Median NaN NaN NaN 0 0 Median 1.4037 1.1739 NaN 1 0 Median 60107000 1848300 58259000 56295000 0 56295000 3812500 1848300 1964200 15271 2004;502 15683 40505;40506;40507;40508 63548;63549;63550;63551 63548 4 YLVIDEAHR MLIKEKSVFKKFNWRYLVIDEAHRIKNEKS KKFNWRYLVIDEAHRIKNEKSKLSEIVREF R Y L H R I 1 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1114.5771 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;Q4W5H1;D7EZH4 O60264 304 312 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2;3 0.00044722 85.676 2 1 2.3988 2.7438 31.649 3 Median 2.2918 2.5272 11.63 2 0 Median 5.2353 4.2908 NaN 1 0 Median 218960000 66895000 152070000 202240000 64047000 138190000 16726000 2848800 13878000 15272 1391 15684 40509;40510;40511 63552;63553;63554;63555;63556 63552 5 YLVLDEADR VDMMERGKIGLDFCKYLVLDEADRMLDMGF GLDFCKYLVLDEADRMLDMGFEPQIRRIVE K Y L D R M 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 9 0 1092.5451 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010;B4E132;D6RCM4;Q9NQI0 A0A0D9SFB3 343 351 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 2 0.0017345 81.548 2 2 1.1943 1.0474 29.699 3 Median 1.4379 1.6462 NaN 1 0 Median 1.1562 0.99257 7.5999 2 0 Median 116440000 64475000 51964000 108500000 60583000 47916000 7940200 3892500 4047700 15273 522 15685 40512;40513;40514;40515 63557;63558;63559;63560;63561;63562;63563;63564 63558 8 YLVMDEADR DHLENTKGFNLRALKYLVMDEADRILNMDF NLRALKYLVMDEADRILNMDFETEVDKILK K Y L D R I 1 1 0 2 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 9 0 1110.5016 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9 Q53GJ1 163 171 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 0.0074668 61.962 2 2 1.528 1.5231 43.212 3 Plateau 1.528 1.5231 NaN 1 0 Median 1.154 1.0028 50.697 2 0 Median 20568000 8176100 12392000 16577000 6621200 9955300 3991700 1554900 2436800 15274 313 15686;15687 40516;40517;40518;40519 63565;63566;63567;63568;63569 63568 231 5 YLVSLGCIK AITNATSGGTPEQIRYLVSLGCIKPLCDLL TPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ R Y L I K P 0 0 0 0 1 0 0 1 0 1 2 1 0 0 0 1 0 0 1 1 0 0 9 0 1051.5736 B4DII5;B4DWX3;O60684 B4DII5 413 421 KPNA6 Importin subunit alpha;Importin subunit alpha-7 yes no 2 0.011752 61.962 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15275 980 15688 40520 63570 63570 1 YLVVGR KYGLKSKSHGVGHDRYLVVGRKRRKEDLLD KSHGVGHDRYLVVGRKRRKEDLLDQLKQEG R Y L G R K 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 2 0 0 6 0 705.41736 Q6NUN2;A3F769;O15226;A3F768;A2I829 Q6NUN2 657 662 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.034273 112.58 1 0.72192 0.78947 NaN 1 Median 0.72192 0.78947 NaN 1 0 Median NaN NaN NaN 0 0 Median 34965000 20125000 14840000 34965000 20125000 14840000 0 0 0 15276 655 15689 40521 63571 63571 1 YLYEIAR LCDEFKADEKKFWGKYLYEIARRHPYFYAP DEKKFWGKYLYEIARRHPYFYAPELLYYAN K Y L A R R 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 926.48617 CON__P02769;H7C013 CON__P02769 161 167 ALB no no 2 0.030945 68.485 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35343000 35343000 0 35343000 35343000 0 0 0 0 + 15277 1153 15690 40522 63572 63572 1 YLYFLYLK HLKDIPAQHITLFLKYLYFLYLKCSENATM HITLFLKYLYFLYLKCSENATMTLPGIHPP K Y L L K C 0 0 0 0 0 0 0 0 0 0 3 1 0 1 0 0 0 0 3 0 0 0 8 0 1121.6161 Q9H8H0 Q9H8H0 619 626 NOL11 Nucleolar protein 11 yes yes 2 0.029494 63.148 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15278 2042 15691 40523 63573 63573 1 YLYSSEDYIK ILLWDVDGGLTQIDKYLYSSEDYIKSGALL TQIDKYLYSSEDYIKSGALLACGIVNSGVR K Y L I K S 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 2 0 0 3 0 0 0 10 0 1279.5972 Q59EG8;Q13200;B4DM22;Q9NSM5;Q13041 Q59EG8 437 446 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.00016057 95.358 2 2.0843 2.1579 15.206 2 Median 2.0843 2.1579 15.206 2 0 Median NaN NaN NaN 0 0 Median 36704000 12513000 24191000 36704000 12513000 24191000 0 0 0 15279 1707 15692 40524;40525 63574;63575;63576;63577 63577 4 YLYTLVITDK KKNKDNVKFKVRCSRYLYTLVITDKEKAEK VRCSRYLYTLVITDKEKAEKLKQSLPPGLA R Y L D K E 0 0 0 1 0 0 0 0 0 1 2 1 0 0 0 0 2 0 2 1 0 0 10 0 1227.6751 A0A024R8P8;P63173;J3KT73;J3QL01 A0A024R8P8 41 50 RPL38 60S ribosomal protein L38 yes no 2 1.5494E-05 101.11 2 2 1.2781 1.2287 5.4799 4 Median 1.121 1.2842 2.9401 2 0 Median 1.4314 1.1781 2.6539 2 0 Median 412620000 205930000 206690000 344470000 179460000 165010000 68151000 26470000 41681000 15280 253 15693 40526;40527;40528;40529 63578;63579;63580;63581;63582;63583;63584;63585;63586 63578 9 YMACCLLYR EPANQMVKCDPRHGKYMACCLLYRGDVVPK DPRHGKYMACCLLYRGDVVPKDVNAAIATI K Y M Y R G 1 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 0 0 2 0 0 0 9 0 1248.5454 A6NHL2;B3KT06;B3KPS3;P68363;A8JZY9;B4DDU2;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;P68366;Q71U36;B4DQK4;Q9UQM3 B3KT06 277 285 TUBAL3;TUBA1B;TUBA1C;TUBA4A;TUBA1A Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain no no 2 0.0087515 52.403 1 0.72482 0.63865 NaN 1 Median NaN NaN NaN 0 0 Median 0.72482 0.63865 NaN 1 0 Median 1879600 1112500 767070 0 0 0 1879600 1112500 767070 15281 922;1257;1659;1869;682 15694 40530 63587 63587 531 1 YMFSRPFR ______________________________ GKRRGTRYMFSRPFRKHGVVPLATYMRIYK R Y M F R K 0 2 0 0 0 0 0 0 0 0 0 0 1 2 1 1 0 0 1 0 0 0 8 1 1102.5382 Q6IAX2;P46778;G3V1B3;M0R181;M0R3I5 Q6IAX2 13 20 RPL21 60S ribosomal protein L21 yes no 3 0.0071632 53.166 1 1.5112 1.6414 NaN 1 Median 1.5112 1.6414 NaN 1 0 Median NaN NaN NaN 0 0 Median 34033000 15137000 18897000 34033000 15137000 18897000 0 0 0 15282 1571 15695 40531 63588 63588 1352 1 YMIVDEGHR YIIKDKHILAKIRWKYMIVDEGHRMKNHHC AKIRWKYMIVDEGHRMKNHHCKLTQVLNTH K Y M H R M 0 1 0 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 9 0 1118.5179 A7E2E1;Q9HBD4;B9EGQ8;P51532;A0A0A0MT49;Q59FZ6;B4E0F1;B4DSI8;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 A7E2E1 877 885 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.01002 50.04 1 1.0602 1.0766 NaN 1 Median 1.0602 1.0766 NaN 1 0 Median NaN NaN NaN 0 0 Median 20353000 9209000 11144000 20353000 9209000 11144000 0 0 0 15283 695;1595 15696 40532 63589;63590 63590 542 2 YMPQNPCIIATK IEIKINHEGEVNRARYMPQNPCIIATKTPS RARYMPQNPCIIATKTPSSDVLVFDYTKHP R Y M T K T 1 0 1 0 1 1 0 0 0 2 0 1 1 0 2 0 1 0 1 0 0 0 12 0 1434.6999 Q09028 Q09028 132 143 RBBP4 Histone-binding protein RBBP4 yes yes 2 0.0003989 65.278 2 0.90893 1.0174 NaN 1 Median 0.90893 1.0174 NaN 1 0 Median NaN NaN NaN 0 0 Median 79136000 50421000 28715000 79136000 50421000 28715000 0 0 0 15284 1695 15697 40533;40534 63591;63592;63593 63591 1528 3 YMPQNPHIIATK CEIKINHEGEVNRARYMPQNPHIIATKTPS RARYMPQNPHIIATKTPSSDVLVFDYTKHP R Y M T K T 1 0 1 0 0 1 0 0 1 2 0 1 1 0 2 0 1 0 1 0 0 0 12 0 1411.7282 Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP01 Q6FHQ0 131 142 RBBP7 Histone-binding protein RBBP7 yes no 2;3 0.00028252 68.836 2 1.1364 1.2725 3.1003 2 Median 1.1364 1.2725 3.1003 2 0 Median NaN NaN NaN 0 0 Median 177430000 77133000 100300000 177430000 77133000 100300000 0 0 0 15285 1771 15698 40535;40536 63594;63595;63596;63597 63597 1643 4 YMSPEQISSQDYGK LKNDGKRTRSKGTLRYMSPEQISSQDYGKE RYMSPEQISSQDYGKEVDLYALGLILAELL R Y M G K E 0 0 0 1 0 2 1 1 0 1 0 1 1 0 1 3 0 0 2 0 0 0 14 0 1631.7137 Q8IW76;B7ZKK7;P19525 Q8IW76 454 467 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.00014109 87.001 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15286 1111 15699 40537;40538;40539 63598;63599;63600 63600 847 3 YMTLNPSTK SLPSKFSDFLLDPYKYMTLNPSTKRKNTGS LLDPYKYMTLNPSTKRKNTGSPDRKPSKKS K Y M T K R 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 1 2 0 1 0 0 0 9 0 1053.5165 Q9UIG0 Q9UIG0 298 306 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 9.3548E-06 107.57 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22116000 0 22116000 22116000 0 22116000 0 0 0 15287 2103 15700 40540 63601 63601 1935 1 YMVENHGEDYK KKGNTLSRDLIDYVRYMVENHGEDYKAMAR DYVRYMVENHGEDYKAMARDEKNYYQDTPK R Y M Y K A 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 2 1 0 0 11 0 1383.5765 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9P0T8 Q9Y3C1 121 131 NOP16 Nucleolar protein 16 yes no 2 0.0001918 81.799 2 1.5896 1.5988 10.806 2 Median 1.5896 1.5988 10.806 2 0 Median NaN NaN NaN 0 0 Median 18785000 6431300 12354000 18785000 6431300 12354000 0 0 0 15288 2135 15701 40541;40542 63602;63603;63604;63605 63605 1969 4 YNACILEYK PKGESKDLLFILTAKYNACILEYKQSGESI FILTAKYNACILEYKQSGESIDIITRAHGN K Y N Y K Q 1 0 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 2 0 0 0 9 0 1172.5536 Q16531;B4DSA8;F5GY55;B7Z2A1;F5H2L3;F5GWI0;F5GZY8;F5GYG8 Q16531 84 92 DDB1 DNA damage-binding protein 1 yes no 2 0.0012677 87.639 2 0.51443 0.51938 NaN 1 Median 0.51443 0.51938 NaN 1 0 Median NaN NaN NaN 0 0 Median 47780000 39043000 8737200 47780000 39043000 8737200 0 0 0 15289 1770 15702 40543;40544 63606;63607 63607 2 YNEFSVSLLNEDPK VLKDEAMVLHLTLGKYNEFSVSLLNEDPKS KYNEFSVSLLNEDPKSLDIFIKAVHTTKEL K Y N P K S 0 0 2 1 0 0 2 0 0 0 2 1 0 1 1 2 0 0 1 1 0 0 14 0 1653.7886 B2RWN5;Q9H583;A0A024R3R7;A2VDI1;B4E263;B7ZAU8 B2RWN5 1067 1080 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 9.9732E-05 87.363 2 2 1.2477 1.0195 1.5868 2 Median NaN NaN NaN 0 0 Median 1.2477 1.0195 1.5868 2 0 Median 110000000 76988000 33007000 50933000 50933000 0 59062000 26055000 33007000 15290 897 15703 40545;40546;40547;40548 63608;63609;63610;63611;63612;63613;63614 63612 7 YNEQHVPGSPFTAR SYLPVLPGDYSILVKYNEQHVPGSPFTARV KYNEQHVPGSPFTARVTGDDSMRMSHLKVG K Y N A R V 1 1 1 0 0 1 1 1 1 0 0 0 0 1 2 1 1 0 1 1 0 0 14 0 1601.7587 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61 P21333 1938 1951 FLNA;FLJ00119 Filamin-A yes no 2;3 0.0020295 67.153 5 1 2.2727 2.1527 73.861 2 Median 1.2595 1.2769 NaN 1 0 Median 4.101 3.6292 NaN 1 0 Median 66355000 26794000 39561000 63936000 26247000 37689000 2419500 547220 1872200 15291 1504 15704 40549;40550;40551;40552;40553;40554 63615;63616;63617;63618;63619;63620 63617 6 YNFLPEALDFVGVHQER RLSMSLMEQLLKTLRYNFLPEALDFVGVHQ FLPEALDFVGVHQERTLQCLNAVRTVQSLA R Y N E R T 1 1 1 1 0 1 2 1 1 0 2 0 0 2 1 0 0 0 1 2 0 0 17 0 2033.0007 Q5SRE5;Q9BS12 Q5SRE5 1413 1429 NUP188 Nucleoporin NUP188 homolog yes no 3 0.011302 23.226 1 1.1156 0.97031 NaN 1 Median NaN NaN NaN 0 0 Median 1.1156 0.97031 NaN 1 0 Median 1550100 704110 845990 0 0 0 1550100 704110 845990 15292 1816 15705 40555 63621;63622 63622 2 YNFPLVTLYATLGK ETRAEWMIAAQTCFKYNFPLVTLYATLGKE KYNFPLVTLYATLGKEAVVHGLNESEASYL K Y N G K E 1 0 1 0 0 0 0 1 0 0 3 1 0 1 1 0 2 0 2 1 0 0 14 0 1598.8708 Q8TAF6;O60488;B4DH39;D6RF95 Q8TAF6 132 145 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.00010051 72.652 2 1.5741 1.6162 3.3114 2 Median 1.5741 1.6162 3.3114 2 0 Median NaN NaN NaN 0 0 Median 17574000 6929300 10644000 17574000 6929300 10644000 0 0 0 15293 1394 15706 40556;40557 63623;63624 63623 1 YNFPNPNPFVEDDMDK NHNFSQQCLRMGKERYNFPNPNPFVEDDMD NFPNPNPFVEDDMDKNEIASVAYRYRRWKL R Y N D K N 0 0 3 3 0 0 1 0 0 0 0 1 1 2 3 0 0 0 1 1 0 0 16 0 1940.8251 O15371;B4E1K8 O15371 335 350 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 0.0045814 42.843 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4302100 0 4302100 4302100 0 4302100 0 0 0 15294 1378 15707 40558 63625 63625 1041 1 YNFPVEVEVPMER KNLLIFENLIDLKRRYNFPVEVEVPMERKK RRYNFPVEVEVPMERKKKYIEIRKEAREAA R Y N E R K 0 1 1 0 0 0 3 0 0 0 0 0 1 1 2 0 0 0 1 3 0 0 13 0 1607.7654 P78527 P78527 1988 2000 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0023432 53.569 1 2 0.23916 0.20174 1.3258 2 Median NaN NaN NaN 0 0 Median 0.23916 0.20174 1.3258 2 0 Median 21548000 19123000 2425700 9524300 9524300 0 12024000 9598300 2425700 15295 1665 15708 40559;40560;40561 63626;63627;63628 63627 1468 3 YNGEPEHIER LTPLILKPFGNSISRYNGEPEHIERNDAPH NSISRYNGEPEHIERNDAPHKNTQEKFSLS R Y N E R N 0 1 1 0 0 0 3 1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 10 0 1242.5629 Q14739;A0A024R3R5;C9JXK0 Q14739 132 141 LBR Lamin-B receptor yes no 2;3 0.0010168 77.533 2 1.3175 1.3079 3.5833 2 Median 1.3175 1.3079 3.5833 2 0 Median NaN NaN NaN 0 0 Median 32302000 13248000 19054000 32302000 13248000 19054000 0 0 0 15296 1743 15709 40562;40563 63629;63630;63631 63631 3 YNGLIHR YSTEPNNLKARNSFRYNGLIHRKTVGVEPA LKARNSFRYNGLIHRKTVGVEPAADGKGVV R Y N H R K 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 7 0 871.46644 P46779;H0YKD8;H0YLP6;H0YMF4;Q59F34 P46779 40 46 RPL28 60S ribosomal protein L28 yes no 2 0.0085438 127.66 2 2 0.91057 0.89849 17.678 4 Median 0.88601 1.0409 7.9665 2 0 Median 0.91057 0.78097 6.9918 2 0 Median 981350000 512800000 468550000 925820000 483570000 442240000 55530000 29221000 26308000 15297 1572 15710 40564;40565;40566;40567 63632;63633;63634;63635;63636;63637;63638;63639 63632 8 YNHMLSATVK TREAITHLLGVALTRYNHMLSATVKIIQML VALTRYNHMLSATVKIIQMLQHFEHLAPVL R Y N V K I 1 0 1 0 0 0 0 0 1 0 1 1 1 0 0 1 1 0 1 1 0 0 10 0 1162.5805 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 234 243 NCAPD2 Condensin complex subunit 1 yes no 2 7.3374E-10 131.52 2 1.2867 1.4116 10.654 2 Median 1.2867 1.4116 10.654 2 0 Median NaN NaN NaN 0 0 Median 130250000 58151000 72102000 130250000 58151000 72102000 0 0 0 15298 908 15711 40568;40569 63640;63641;63642 63641 749 3 YNILGTNTIMDK KTTWVTKHAAENPGKYNILGTNTIMDKMMV PGKYNILGTNTIMDKMMVAGFKKQMADTGK K Y N D K M 0 0 2 1 0 0 0 1 0 2 1 1 1 0 0 0 2 0 1 0 0 0 12 0 1381.6912 B4DLR3;Q00839;Q96BA7;B3KX72;Q7Z4Q5 B4DLR3 484 495 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 2.4682E-08 113.93 2 2.0053 2.2676 0.57127 2 Median 2.0053 2.2676 0.57127 2 0 Median NaN NaN NaN 0 0 Median 226790000 69734000 157060000 226790000 69734000 157060000 0 0 0 15299 999 15712 40570;40571 63643;63644;63645 63643 793 3 YNIPHGPVVGSTR YADLSDTELTTLLRRYNIPHGPVVGSTRRL RRYNIPHGPVVGSTRRLYEKKIFEYETQRR R Y N T R R 0 1 1 0 0 0 0 2 1 1 0 0 0 0 2 1 1 0 1 2 0 0 13 0 1395.7259 P50402 P50402 19 31 EMD Emerin yes yes 2;3 0.0078619 54.259 1 2 0.72279 0.61715 2.775 2 Median NaN NaN NaN 0 0 Median 0.72279 0.61715 2.775 2 0 Median 25149000 6317900 18831000 14089000 0 14089000 11060000 6317900 4742600 15300 1590 15713 40572;40573;40574 63646;63647;63648;63649 63646 4 YNLDASEEEDSNK KLDEDEDEDDADLSKYNLDASEEEDSNKKK SKYNLDASEEEDSNKKKSNRRSRSKSRSSH K Y N N K K 1 0 2 2 0 0 3 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 13 0 1512.6216 O95218 O95218 183 195 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes yes 2 1.8315E-06 101.39 2 2 0.55213 0.44224 0.93379 2 Median NaN NaN NaN 0 0 Median 0.55213 0.44224 0.93379 2 0 Median 5868700 3551300 2317400 0 0 0 5868700 3551300 2317400 15301 1420 15714 40575;40576;40577;40578 63650;63651;63652;63653;63654;63655 63651 6 YNLEELYQAVENLCSHK LHEAVRAVQSSTSIRYNLEELYQAVENLCS LEELYQAVENLCSHKVSPMLYKQLRQACED R Y N H K V 1 0 2 0 1 1 3 0 1 0 3 1 0 0 0 1 0 0 2 1 0 0 17 0 2108.9837 Q13619;A0A087WWN2 Q13619 81 97 CUL4A Cullin-4A yes no 3 0.0039363 29.973 2 1 0.95394 0.80217 5.6771 3 Plateau 0.73409 0.73756 3.6376 2 0 Median 1.0003 0.80514 NaN 1 0 Median 43829000 23972000 19857000 21060000 11989000 9071500 22769000 11983000 10786000 15302 1718 15715 40579;40580;40581 63656;63657;63658 63657 3 YNLSAGTIK TPLKSRKVIEQRCMRYNLSAGTIKAVTDFV EQRCMRYNLSAGTIKAVTDFVIPECQKKSP R Y N I K A 1 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 1 0 1 0 0 0 9 0 965.5182 Q6P0N0 Q6P0N0 668 676 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.0037472 69.716 2 1 1.3187 1.0688 NaN 1 Median NaN NaN NaN 0 0 Median 1.3187 1.0688 NaN 1 0 Median 2707300 1250400 1456900 0 0 0 2707300 1250400 1456900 15303 1849 15716 40582;40583;40584 63659;63660;63661 63659 3 YNLSQPSEAPPLAVHDEAEK LQFTLVETLWKTFWRYNLSQPSEAPPLAVH PSEAPPLAVHDEAEKRLPKAILVLLSKFEP R Y N E K R 3 0 1 1 0 1 3 0 1 0 2 1 0 0 3 2 0 0 1 1 0 0 20 0 2194.0542 P22670 P22670 641 660 RFX1 MHC class II regulatory factor RFX1 yes yes 3 3.8567E-05 42.348 1 2 1.0441 0.82359 22.873 3 Median 0.56635 0.60014 NaN 1 0 Median 1.1116 0.87792 9.0352 2 0 Median 24209000 12851000 11358000 16186000 8758700 7427600 8022300 4092100 3930200 15304 1509 15717 40585;40586;40587 63662;63663;63664 63662 3 YNPTWHCIVGR EKDIAAHIKKEFDKKYNPTWHCIVGRNFGS FDKKYNPTWHCIVGRNFGSYVTHETKHFIY K Y N G R N 0 1 1 0 1 0 0 1 1 1 0 0 0 0 1 0 1 1 1 1 0 0 11 0 1401.6612 Q6FGH9;Q96FJ2;P63167 Q6FGH9 50 60 DNCL1;DYNLL2;DYNLL1 Dynein light chain 2, cytoplasmic;Dynein light chain 1, cytoplasmic yes no 3 0.052521 36.303 1 1.0365 1.0452 NaN 1 Median 1.0365 1.0452 NaN 1 0 Median NaN NaN NaN 0 0 Median 6252000 3286700 2965300 6252000 3286700 2965300 0 0 0 15305 1654 15718 40588 63665 63665 0 YNSSSISSVLK GRGRGPPPAPRPTSRYNSSSISSVLKDPDS PTSRYNSSSISSVLKDPDSNPYSLLDTSEP R Y N L K D 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 5 0 0 1 1 0 0 11 0 1183.6085 P51116 P51116 502 512 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 0.00030074 78.655 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15306 1593 15719 40589 63666 63666 1 YNVGDLVWSK ESCPNTGRDKDHLLKYNVGDLVWSKVSGYP DHLLKYNVGDLVWSKVSGYPWWPCMVSADP K Y N S K V 0 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 1 1 2 0 0 10 0 1179.5924 O96028;Q05CW4;D6R9V2 O96028 220 229 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.0011053 69.275 1 1 1.9895 1.5487 NaN 1 Median NaN NaN NaN 0 0 Median 1.9895 1.5487 NaN 1 0 Median 3357800 1129300 2228500 0 0 0 3357800 1129300 2228500 15307 1435 15720 40590;40591 63667;63668 63667 2 YNVPLNR SEISENTDASGKIEKYNVPLNRLKMMFEKG DASGKIEKYNVPLNRLKMMFEKGEPTQTKI K Y N N R L 0 1 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 7 0 874.4661 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VRN8 F8VQE1 30 36 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.030002 69.432 1 2.2754 2.5955 NaN 1 Median 2.2754 2.5955 NaN 1 0 Median NaN NaN NaN 0 0 Median 95447000 25851000 69596000 95447000 25851000 69596000 0 0 0 15308 1010 15721 40592 63669 63669 1 YNVSTTPYLQSVK VKTPNTETRTSCLIKYNVSTTPYLQSVKKK IKYNVSTTPYLQSVKKKVQFDGTNSAFKEL K Y N V K K 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 2 2 0 2 2 0 0 13 0 1498.7668 B2RMQ4;Q8WWK9 B2RMQ4 591 603 CKAP2 Cytoskeleton-associated protein 2 yes no 2 1.475E-06 110.84 1 1.2801 1.033 NaN 1 Median NaN NaN NaN 0 0 Median 1.2801 1.033 NaN 1 0 Median 23341000 9674200 13667000 0 0 0 23341000 9674200 13667000 15309 895 15722 40593 63670;63671 63670 2 YPASTVQILGAEK ARLIAHAGSLTNLAKYPASTVQILGAEKAL AKYPASTVQILGAEKALFRALKTRGNTPKY K Y P E K A 2 0 0 0 0 1 1 1 0 1 1 1 0 0 1 1 1 0 1 1 0 0 13 0 1375.7347 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 321 333 NOP56 Nucleolar protein 56 yes no 2 4.3907E-31 174.77 2 2 0.86864 0.85464 4.4669 4 Median 0.75808 0.88755 3.9747 2 0 Median 0.97096 0.83356 2.1637 2 0 Median 912380000 512460000 399920000 707760000 407970000 299790000 204620000 104490000 100130000 15310 785 15723 40594;40595;40596;40597 63672;63673;63674;63675;63676;63677;63678;63679;63680 63673 9 YPDISDSISTER RVVQKYPLLKEPQWKYPDISDSISTERILD QWKYPDISDSISTERILDDSKDSVGDSLSG K Y P E R I 0 1 0 2 0 0 1 0 0 2 0 0 0 0 1 3 1 0 1 0 0 0 12 0 1381.6361 B9EGR5;Q8IWI9;H3BP52;H3BTF4 B9EGR5 553 564 MGA MAX gene-associated protein yes no 2 0.051478 42.336 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15311 1121 15724 40598 63681 63681 1 YPEAQSVASDILR RFKILKAECLAMLGRYPEAQSVASDILRMD GRYPEAQSVASDILRMDSTNADALYVRGLC R Y P L R M 2 1 0 1 0 1 1 0 0 1 1 0 0 0 1 2 0 0 1 1 0 0 13 0 1447.7307 B4DKK3;B7Z9W6;Q59EH7;Q99615;K7EPP7;K7ESP1;A8K4T2;K7EIH8 B4DKK3 64 76 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.047207 41.218 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13675000 13675000 0 13675000 13675000 0 0 0 0 15312 990 15725 40599;40600 63682;63683 63682 2 YPEETLSLMTK EARLKFPRLLQIIERYPEETLSLMTKEISS IIERYPEETLSLMTKEISSVPCWQFISWIS R Y P T K E 0 0 0 0 0 0 2 0 0 0 2 1 1 0 1 1 2 0 1 0 0 0 11 0 1310.6428 P78527 P78527 3475 3485 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.012631 64.374 2 1 1.2655 1.2838 NaN 1 Median 1.2655 1.2838 NaN 1 0 Median NaN NaN NaN 0 0 Median 13428000 4674200 8753300 13428000 4674200 8753300 0 0 0 15313 1665 15726;15727 40601;40602;40603 63684;63685;63686 63685 1469 2 YPENFFLLR QSLETICLLLAYKIKYPENFFLLRGNHECA LAYKIKYPENFFLLRGNHECASINRIYGFY K Y P L R G 0 1 1 0 0 0 1 0 0 0 2 0 0 2 1 0 0 0 1 0 0 0 9 0 1197.6182 P62136;A0A140VJS9;B3KXM2;E9PMD7;A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 P62136 114 122 PPP1CA;PPP1CC;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 3.6058E-06 134.15 2 2 1.6472 1.6522 17.297 4 Median 1.2239 1.4252 0.75928 2 0 Median 2.215 1.9223 1.2682 2 0 Median 616950000 247420000 369530000 459500000 198200000 261290000 157450000 49216000 108240000 15314 1632;343;1633 15728 40604;40605;40606;40607 63687;63688;63689;63690;63691;63692;63693;63694;63695;63696 63692 10 YPEPSGALPGDDLSSR VNLQQKPCAYHPGDKYPEPSGALPGDDLSS PEPSGALPGDDLSSRAKEFAFYPSFASSYQ K Y P S R A 1 1 0 2 0 0 1 2 0 0 2 0 0 0 3 3 0 0 1 0 0 0 16 0 1659.774 P31276 P31276 153 168 HOXC13 Homeobox protein Hox-C13 yes yes 2 1.5964E-08 123.64 2 2 0.51108 0.48999 34.514 4 Median 0.33974 0.34863 18.517 2 0 Median 0.70799 0.61513 2.5478 2 0 Median 38569000 26697000 11872000 33360000 23466000 9894200 5208900 3230900 1977900 15315 1534 15729 40608;40609;40610;40611 63697;63698;63699;63700;63701;63702;63703 63698 7 YPHLQVIGGNVVTAAQAK NSVYQIAMVHYIKQKYPHLQVIGGNVVTAA LQVIGGNVVTAAQAKNLIDAGVDGLRVGMG K Y P A K N 3 0 1 0 0 2 0 2 1 1 1 1 0 0 1 0 1 0 1 3 0 0 18 0 1865.0159 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;A0A024R725;C9J381 B4DNJ7 294 311 IMPDH;DKFZp781N0678;IMPDH1 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 yes no 3 0.00013234 45.221 2 1.4765 1.4949 8.9239 2 Median 1.4765 1.4949 8.9239 2 0 Median NaN NaN NaN 0 0 Median 24344000 9993000 14351000 24344000 9993000 14351000 0 0 0 15316 935 15730 40612;40613 63704;63705 63704 2 YPIEHGIITNWDDMEK VGDEAQSKRGILTLKYPIEHGIITNWDDME PIEHGIITNWDDMEKIWHHTFYNELRVAPE K Y P E K I 0 0 1 2 0 0 2 1 1 3 0 1 1 0 1 0 1 1 1 0 0 0 16 0 1959.9037 B7Z6P1;D2JYH4;P63267;P68133;P68032;P62736;B3KW67;A8K3K1;Q7Z7J6;A6NL76;Q13707;B4DUI8;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1 B7Z6P1 71 86 ACTA2;ACTG2;ACTA1;ACTC1 Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle yes no 3 1.2909E-07 98.507 4 4 1.9697 1.7785 34.054 8 Median 1.6316 1.7906 48.279 4 0 Median 2.1384 1.7785 18.661 4 0 Median 2880900000 931430000 1949500000 2643400000 852690000 1790700000 237510000 78736000 158770000 15317 1100 15731;15732 40614;40615;40616;40617;40618;40619;40620;40621 63706;63707;63708;63709;63710;63711;63712;63713;63714;63715;63716;63717;63718;63719;63720;63721;63722;63723;63724;63725 63707 843 20 YPIPPPDAK IWSMGLSLVELAVGRYPIPPPDAKELEAIF ELAVGRYPIPPPDAKELEAIFGRPVVDGEE R Y P A K E 1 0 0 1 0 0 0 0 0 1 0 1 0 0 4 0 0 0 1 0 0 0 9 0 996.52803 B4DFY5;A4QPA9;Q02750;H3BRW9;B3KS97;P36507;Q7Z370;G5E9C7;A0A1B0GUL7 P36507 265 273 MAP2K1;MAP2K2;DKFZp686L02273 Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2 no no 2 0.0066845 63.565 1 1.0688 1.0757 NaN 1 Median 1.0688 1.0757 NaN 1 0 Median NaN NaN NaN 0 0 Median 27110000 14743000 12368000 27110000 14743000 12368000 0 0 0 15318 1547;674 15733 40622 63726;63727 63726 2 YPLFEGQETGK DLANGNITWADVEARYPLFEGQETGKKETI VEARYPLFEGQETGKKETIEE_________ R Y P G K K 0 0 0 0 0 1 2 2 0 0 1 1 0 1 1 0 1 0 1 0 0 0 11 0 1267.6085 A0A090N8G0;P41250 A0A090N8G0 669 679 GARS Glycine--tRNA ligase yes no 2 2.5051E-08 114.86 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19996000 0 19996000 19996000 0 19996000 0 0 0 15319 457 15734 40623;40624 63728;63729 63729 2 YPLLLQSIGQNTEEPTER QLKDMIPTEMQRLTKYPLLLQSIGQNTEEP LLQSIGQNTEEPTEREKVELAAECCREILH K Y P E R E 0 1 1 0 0 2 3 1 0 1 3 0 0 0 2 1 2 0 1 0 0 0 18 0 2087.0535 Q49AN3;M0R2C7;M0QYC1;A0A024R0R1;M0QZR4;Q92888 Q49AN3 227 244 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 2 0.0016107 55.452 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3842600 3842600 0 3842600 3842600 0 0 0 0 15320 55 15735 40625;40626 63730;63731 63731 2 YPLPVFSTFVLTGSSAK LPMGATIECWDPETKYPLPVFSTFVLTGSS LPVFSTFVLTGSSAKKVYGAAIQFYEPYSR K Y P A K K 1 0 0 0 0 0 0 1 0 0 2 1 0 2 2 3 2 0 1 2 0 0 17 0 1812.9662 R4GMN2;R4GNB2;R4GN35;Q5VZ89 R4GMN2 23 39 DENND4C DENN domain-containing protein 4C yes no 2 0.00055256 59.227 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15321 1834 15736 40627 63732 63732 1 YPLTVFESR VTQCGKFYHEACVKKYPLTVFESRGFRCPL EACVKKYPLTVFESRGFRCPLHSCVSCHAS K Y P S R G 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 1 1 0 1 1 0 0 9 0 1110.571 O96028 O96028 747 755 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.006942 66.621 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15322 1435 15737 40628;40629 63733;63734 63733 2 YPMAVGLNK ______________________________ ______________________________ R Y P N K G 1 0 1 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 1 0 0 9 0 991.51609 Q9Y3U8;J3QSB5;J3KTD3 Q9Y3U8 5 13 RPL36 60S ribosomal protein L36 yes no 2 3.4707E-17 146.01 4 3 0.7766 0.70022 44.159 5 Median 1.0017 1.147 32.533 3 0 Median 0.64998 0.52841 24.55 2 0 Median 543020000 246090000 296930000 531450000 237990000 293460000 11570000 8103800 3466000 15323 2140 15738;15739 40630;40631;40632;40633;40634;40635;40636 63735;63736;63737;63738;63739;63740;63741;63742;63743;63744 63741 1981 10 YPNIELSYEVVDK LTDSQIADVARFCNRYPNIELSYEVVDKDS NRYPNIELSYEVVDKDSIRSGGPVVVLVQL R Y P D K D 0 0 1 1 0 0 2 0 0 1 1 1 0 0 1 1 0 0 2 2 0 0 13 0 1567.777 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;B4E0P5;Q7L5W4;Q9P172 O75643 2014 2026 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 9.6111E-22 142.83 3 2 1.073 0.98361 15.102 3 Median 1.073 1.15 NaN 1 0 Median 1.1332 0.9145 10.302 2 0 Median 94974000 44560000 50414000 81827000 38806000 43022000 13147000 5754400 7392300 15324 1411 15740 40637;40638;40639;40640;40641 63745;63746;63747;63748;63749;63750;63751;63752 63748 8 YPNLQVIGGNVVTAAQAK NSIFQINMIKYIKDKYPNLQVIGGNVVTAA LQVIGGNVVTAAQAKNLIDAGVDALRVGMG K Y P A K N 3 0 2 0 0 2 0 2 0 1 1 1 0 0 1 0 1 0 1 3 0 0 18 0 1841.9999 H0Y4R1;P12268;B7Z1G4 H0Y4R1 226 243 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 3.5909E-51 173.19 2 2 1.1593 1.091 30.142 4 Median 1.2169 1.3778 1.031 2 0 Median 1.0416 0.82251 7.9734 2 0 Median 301390000 136840000 164550000 266690000 120140000 146560000 34692000 16705000 17987000 15325 1282 15741 40642;40643;40644;40645 63753;63754;63755;63756;63757;63758;63759;63760;63761 63754 9 YPPFPSDYLALQLPEPSPLRPK SGVPSPYLSSLASSRYPPFPSDYLALQLPE YLALQLPEPSPLRPKREKRPRLPRKLKMAV R Y P P K R 1 1 0 1 0 1 1 0 0 0 4 1 0 1 7 2 0 0 2 0 0 0 22 1 2524.3366 Q8NBZ0;I3NI13;I3L270;I3L0W8 Q8NBZ0 138 159 INO80E INO80 complex subunit E yes no 3 0.021237 20.439 1 1.1787 1.0171 NaN 1 Median NaN NaN NaN 0 0 Median 1.1787 1.0171 NaN 1 0 Median 12999000 5755000 7244000 0 0 0 12999000 5755000 7244000 15326 1921 15742 40646 63762 63762 1 YPPPTELLDLQPLPVSALR TQLPVSFRHLILPEKYPPPTELLDLQPLPV TELLDLQPLPVSALRNSAFESLYQDKFPFF K Y P L R N 1 1 0 1 0 1 1 0 0 0 5 0 0 0 5 1 1 0 1 1 0 0 19 0 2118.1725 O75643;A4FU77 O75643 1295 1313 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 4.5912E-23 135.58 2 0.90884 0.98438 7.8499 2 Median 0.90884 0.98438 7.8499 2 0 Median NaN NaN NaN 0 0 Median 87367000 43775000 43592000 87367000 43775000 43592000 0 0 0 15327 1411 15743 40647;40648 63763;63764;63765;63766;63767;63768 63768 6 YPSLELER SGASVVAIRKYIIHKYPSLELERRGYLLKQ RKYIIHKYPSLELERRGYLLKQALKRELNR K Y P E R R 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 8 0 1005.5131 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 191 198 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 1.88E-05 142.36 2 2 0.83125 0.82486 8.6851 4 Median 0.76226 0.89278 4.5903 2 0 Median 0.89439 0.77497 2.2217 2 0 Median 728230000 419080000 309150000 626210000 364820000 261390000 102020000 54255000 47764000 15328 1817 15744 40649;40650;40651;40652 63769;63770;63771;63772;63773;63774 63771 6 YPSPFFVFGEK HKSSVNCPFSSQDMKYPSPFFVFGEKIRTR QDMKYPSPFFVFGEKIRTRAISAKGMTLVT K Y P E K I 0 0 0 0 0 0 1 1 0 0 0 1 0 3 2 1 0 0 1 1 0 0 11 0 1316.6441 Q08211;B3KU66 Q08211 1038 1048 DHX9 ATP-dependent RNA helicase A yes no 2 2.1018E-05 104.52 2 2 1.4312 1.5386 12.419 4 Linear 1.341 1.52 2.1553 2 0 Median 1.5241 1.2279 1.5931 2 0 Median 322530000 130310000 192220000 277350000 112330000 165020000 45172000 17974000 27198000 15329 1691 15745 40653;40654;40655;40656 63775;63776;63777;63778;63779;63780;63781;63782;63783 63776 9 YPTFIDALR DNKPNYKLDHIIKERYPTFIDALRDLDDAL HIIKERYPTFIDALRDLDDALSMCFLFSTF R Y P L R D 1 1 0 1 0 0 0 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 9 0 1094.576 B5MCF9;B2RDF2;O00541 B5MCF9 124 132 PES1 Pescadillo homolog yes no 2 0.0049382 67.993 1 0.8572 0.90702 NaN 1 Median 0.8572 0.90702 NaN 1 0 Median NaN NaN NaN 0 0 Median 41025000 21944000 19081000 41025000 21944000 19081000 0 0 0 15330 886 15746 40657 63784;63785 63785 2 YPTQSGKPPLLVSAPSK HLLSQPLFTESQKTKYPTQSGKPPLLVSAP TQSGKPPLLVSAPSKSESALSCLSKQKKKK K Y P S K S 1 0 0 0 0 1 0 1 0 0 2 2 0 0 4 3 1 0 1 1 0 0 17 1 1768.9723 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;A0A087WXU8;Q7Z4X3;B4DGI6 B4DKV2 716 732 DDX24 ATP-dependent RNA helicase DDX24 yes no 3 3.3229E-05 68.481 2 1 0.82201 0.81766 9.4871 2 Median 0.75646 0.87439 NaN 1 0 Median 0.89323 0.7646 NaN 1 0 Median 37320000 22981000 14339000 32957000 20307000 12649000 4363300 2673500 1689800 15331 993 15747 40658;40659;40660 63786;63787;63788;63789 63788 4 YQADITDLLK KTLLADKGEIRVGNRYQADITDLLKEGEED RVGNRYQADITDLLKEGEEDGRDQSRLETQ R Y Q L K E 1 0 0 2 0 1 0 0 0 1 2 1 0 0 0 0 1 0 1 0 0 0 10 0 1178.6183 E7ESY4;Q13330;A0A024R6P5;Q86TR6 E7ESY4 173 182 MTA1 Metastasis-associated protein MTA1 yes no 2 0.00021283 93.649 2 2 1.0795 1.1621 31.37 3 Median 0.94542 0.99168 22.424 2 0 Median 1.9736 1.5848 NaN 1 0 Median 77151000 32639000 44513000 64062000 30160000 33902000 13090000 2478800 10611000 15332 1223 15748 40661;40662;40663;40664 63790;63791;63792;63793;63794;63795;63796 63791 7 YQAECSQFK ENCNKNKFLDQNLQKYQAECSQFKAKLASL DQNLQKYQAECSQFKAKLASLEELKRQAEL K Y Q F K A 1 0 0 0 1 2 1 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 9 0 1159.4968 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 1065 1073 DSP;DSP variant protein Desmoplakin yes no 2 0.00025784 104.44 2 0.46092 0.48427 12.398 2 Median 0.46092 0.48427 12.398 2 0 Median NaN NaN NaN 0 0 Median 35763000 24171000 11592000 35763000 24171000 11592000 0 0 0 15333 1486 15749 40665;40666 63797;63798;63799;63800 63798 4 YQAEIPDR KTLLADQGEIRVGCKYQAEIPDRLVEGESD EIRVGCKYQAEIPDRLVEGESDNRNQQKME K Y Q D R L 1 1 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 8 0 990.47706 A0A024R534;O94776 A0A024R534 153 160 MTA2 Metastasis-associated protein MTA2 yes no 2 2.5539E-05 126.67 1 2 1.7794 1.4953 NaN 1 Median NaN NaN NaN 0 0 Median 1.7794 1.4953 NaN 1 0 Median 65145000 52835000 12310000 49524000 49524000 0 15621000 3311300 12310000 15334 168 15750 40667;40668;40669 63801;63802;63803;63804 63801 4 YQAEIPDRLVEGESDNR KTLLADQGEIRVGCKYQAEIPDRLVEGESD AEIPDRLVEGESDNRNQQKMEMKVWDPDNP K Y Q N R N 1 2 1 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 1 1 0 0 17 1 1989.9392 A0A024R534;O94776 A0A024R534 153 169 MTA2 Metastasis-associated protein MTA2 yes no 3 0.0093329 25.198 1 1.7675 1.5993 NaN 1 Median NaN NaN NaN 0 0 Median 1.7675 1.5993 NaN 1 0 Median 4099200 1219800 2879400 0 0 0 4099200 1219800 2879400 15335 168 15751 40670 63805 63805 1 YQAPDIDVQLSSELTDSLR REAEADKPRRLGRLKYQAPDIDVQLSSELT DIDVQLSSELTDSLRTLKPEGNILRDRFKS K Y Q L R T 1 1 0 3 0 2 1 0 0 1 3 0 0 0 1 3 1 0 1 1 0 0 19 0 2149.0539 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;M0QZ34;M0QZU5;M0QYZ9;Q9P0B0;Q9H7J4 Q7L4X7 407 425 GLTSCR2;FLJ00085 Glioma tumor suppressor candidate region gene 2 protein yes no 2 8.7186E-12 100.11 1 2 1.2897 1.3806 19.847 3 Plateau 1.2897 1.3806 NaN 1 0 Median 1.1791 0.99661 8.931 2 0 Median 37921000 15504000 22417000 25062000 9892500 15169000 12859000 5611100 7247800 15336 1068 15752 40671;40672;40673 63806;63807;63808;63809;63810;63811 63807 6 YQAVTATLEEK KFAYLGRLAHEVGWKYQAVTATLEEKRKEK VGWKYQAVTATLEEKRKEKAKIHYRKKKQL K Y Q E K R 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 2 0 1 1 0 0 11 0 1251.6347 Q53H34;P40429;Q9BSQ6;Q5QTS3;M0QYS1;Q8J015;Q6NVV1 Q53H34 149 159 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 1.13E-13 150.08 2 2 0.90088 0.90786 17.565 4 Median 0.88961 1.057 0.75244 2 0 Median 0.91235 0.77985 0.74237 2 0 Median 1909100000 1029300000 879890000 1742700000 940760000 801910000 166480000 88490000 77987000 15337 1558 15753 40674;40675;40676;40677 63812;63813;63814;63815;63816;63817;63818;63819;63820;63821 63813 10 YQDILVFR LSLQVEQLLHHRRSRYQDILVFRSKTYGNV LHHRRSRYQDILVFRSKTYGNVLVLDGVIQ R Y Q F R S 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1052.5655 P19623;K7EKM4 P19623 48 55 SRM Spermidine synthase yes no 2 0.0092533 75.109 1 1.1583 1.137 NaN 1 Median 1.1583 1.137 NaN 1 0 Median NaN NaN NaN 0 0 Median 14085000 6904200 7180400 14085000 6904200 7180400 0 0 0 15338 1500 15754 40678 63822;63823 63823 2 YQEAQEEIMK VIENMNKEKAFLFEKYQEAQEEIMKLKDTL FLFEKYQEAQEEIMKLKDTLKSQMTQEASD K Y Q M K L 1 0 0 0 0 2 3 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 10 0 1267.5755 Q9P0K7;B4DNL3 Q9P0K7 601 610 RAI14 Ankycorbin yes no 2 0.015944 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2802700 0 2802700 2802700 0 2802700 0 0 0 15339 2093 15755 40679 63824 63824 1922 1 YQELPNSGPPHDR EELNTYRQKQGVVLKYQELPNSGPPHDRRF LKYQELPNSGPPHDRRFTFQVIIDGREFPE K Y Q D R R 0 1 1 1 0 1 1 1 1 0 1 0 0 0 3 1 0 0 1 0 0 0 13 0 1508.7008 Q8IW76;B7ZKK7;P19525;Q05CP4;Q6PK38;F8WBH4;C9JZT2 Q8IW76 27 39 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.00013509 84.718 2 1.9334 1.9526 NaN 1 Median 1.9334 1.9526 NaN 1 0 Median NaN NaN NaN 0 0 Median 10097000 3531800 6564900 10097000 3531800 6564900 0 0 0 15340 1111 15756 40680;40681 63825;63826;63827 63826 3 YQEQLVQEQELAK VDKQLASELEYDMKKYQEQLVQEQELAKHA KKYQEQLVQEQELAKHADVAGTAGGAEVAP K Y Q A K H 1 0 0 0 0 4 3 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 13 0 1604.8046 P42695;Q96FA6;E9PQA3 P42695 1259 1271 NCAPD3 Condensin-2 complex subunit D3 yes no 2 2.8042E-13 125.97 2 2 1.4189 1.3066 27.314 4 Median 0.96255 1.0303 6.4158 2 0 Median 2.0329 1.6418 5.1182 2 0 Median 75575000 34473000 41102000 60050000 29455000 30595000 15525000 5018100 10507000 15341 1565 15757 40682;40683;40684;40685 63828;63829;63830;63831;63832;63833;63834;63835;63836;63837 63830 10 YQFDAFYGER SLEIANWRNHQETLKYQFDAFYGERSTQQD QETLKYQFDAFYGERSTQQDIYAGSVQPIL K Y Q E R S 1 1 0 1 0 1 1 1 0 0 0 0 0 2 0 0 0 0 2 0 0 0 10 0 1294.5619 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 88 97 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.00050835 85.731 1 2 1.4109 1.1465 20.686 3 Median 0.82856 0.84295 NaN 1 0 Median 1.4469 1.1968 6.0703 2 0 Median 49490000 26738000 22752000 29753000 18538000 11215000 19737000 8200400 11537000 15342 1745 15758 40686;40687;40688 63838;63839;63840;63841 63838 4 YQFLADSDTSLMLSLNHPLAPVR ELFHQFVSLSTSGGKYQFLADSDTSLMLSL TSLMLSLNHPLAPVRILAMNHLKKIMKTSK K Y Q V R I 2 1 1 2 0 1 0 0 1 0 5 0 1 1 2 3 1 0 1 1 0 0 23 0 2587.3105 B2RWN5;Q9H583;Q5T3Q7 B2RWN5 473 495 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 5.0425E-13 97.488 2 2 1.4082 1.5008 18.5 4 Linear 1.4082 1.4818 7.0188 2 0 Median 1.3012 1.1167 13.304 2 0 Median 70100000 28217000 41883000 57815000 23425000 34390000 12285000 4791800 7492900 15343 897 15759;15760 40689;40690;40691;40692 63842;63843;63844;63845;63846 63842 718 4 YQFLEEAFQNQK LTCRDCQLLEHKEHRYQFLEEAFQNQKGAI EHRYQFLEEAFQNQKGAIENLLAKLLEKKN R Y Q Q K G 1 0 1 0 0 3 2 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 12 0 1543.7307 H0Y612;A0A024R0F6;Q9UPN9 H0Y612 46 57 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 2 0.0012694 79.986 2 0.59034 0.48345 NaN 1 Median NaN NaN NaN 0 0 Median 0.59034 0.48345 NaN 1 0 Median 7190300 2798300 4392000 0 0 0 7190300 2798300 4392000 15344 45 15761 40693;40694 63847;63848 63847 2 YQGVNLYIK LKRKFEQLKQERISRYQGVNLYIKNLDDTI QERISRYQGVNLYIKNLDDTIDDEKLRKEF R Y Q I K N 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 2 1 0 0 9 0 1096.5917 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;Q53GL4;H0YEU6;Q147Y3;Q3B867 B1ANR0 291 299 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.0038201 77.674 2 1 1.4517 1.3416 41.385 2 Median 1.6673 1.7976 NaN 1 0 Median 1.264 1.0012 NaN 1 0 Median 67787000 16316000 51471000 62876000 14206000 48669000 4911300 2109500 2801800 15345 818 15762 40695;40696;40697 63849;63850;63851;63852;63853 63851 5 YQGVNLYVK LKRKFEQMKQDRITRYQGVNLYVKNLDDGI QDRITRYQGVNLYVKNLDDGIDDERLRKEF R Y Q V K N 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 2 2 0 0 9 0 1082.576 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;A0A024R9E2;H0YAR2;H0YAP2;Q4VXU2 A0A087WTT1 266 274 PABPC1;PABPC1L Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like yes no 2 0.0021808 75.738 1 1.857 1.8735 NaN 1 Median 1.857 1.8735 NaN 1 0 Median NaN NaN NaN 0 0 Median 28250000 10830000 17421000 28250000 10830000 17421000 0 0 0 15346 273 15763 40698 63854 63854 1 YQIDPDACFSAK WTAGNSNTRFGIAAKYQIDPDACFSAKVNN AAKYQIDPDACFSAKVNNSSLIGLGYTQTL K Y Q A K V 2 0 0 2 1 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 12 0 1413.6235 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 225 236 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 5.0945E-08 113.93 2 2 1.7291 1.6998 2.6513 4 Linear 1.4907 1.6838 0.80837 2 0 Median 2.0276 1.633 3.3253 2 0 Median 313460000 120850000 192610000 267180000 105910000 161270000 46287000 14940000 31347000 15347 639 15764 40699;40700;40701;40702 63855;63856;63857;63858;63859;63860;63861;63862 63856 8 YQIHIPLPPK TDIEEGMRVGVDRNKYQIHIPLPPKIDPTV VDRNKYQIHIPLPPKIDPTVTMMQVEEKPD K Y Q P K I 0 0 0 0 0 1 0 0 1 2 1 1 0 0 3 0 0 0 1 0 0 0 10 0 1204.6968 A0A140VK70;P35998;Q75L23 A0A140VK70 147 156 PSMC2 26S protease regulatory subunit 7 yes no 3 0.040797 34.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4665900 0 4665900 4665900 0 4665900 0 0 0 15348 620 15765 40703 63863 63863 1 YQILPLHSQIPR MQKHLEMNPHFGSHRYQILPLHSQIPREEQ SHRYQILPLHSQIPREEQRKVFDPVPVGVT R Y Q P R E 0 1 0 0 0 2 0 0 1 2 2 0 0 0 2 1 0 0 1 0 0 0 12 0 1463.8249 Q08211 Q08211 681 692 DHX9 ATP-dependent RNA helicase A yes yes 2;3 3.918E-05 94.191 3 2 1.1733 1.3504 15.274 3 Median 1.1733 1.3504 15.274 3 0 Median NaN NaN NaN 0 0 Median 461360000 192500000 268860000 418370000 192500000 225870000 42988000 0 42988000 15349 1691 15766 40704;40705;40706;40707;40708 63864;63865;63866;63867;63868;63869 63865 6 YQKSTELLIR HRYRPGTVALREIRRYQKSTELLIRKLPFQ REIRRYQKSTELLIRKLPFQRLVREIAQDF R Y Q I R K 0 1 0 0 0 1 1 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 10 1 1249.703 K7EK07;B2R4P9;P84243;B4E380;Q16695;B2R6Y1;K7EMV3;B4DEB1;K7ES00;Q6NXT2;K7EP01;P68431;Q5TEC6;Q71DI3 K7EK07 55 64 H3F3B;H3F3A;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 0.00082456 95.608 1 0.75613 0.87885 NaN 1 Median 0.75613 0.87885 NaN 1 0 Median NaN NaN NaN 0 0 Median 39431000 22519000 16912000 39431000 22519000 16912000 0 0 0 15350 827;1661;1865;1828 15767 40709 63870 63870 1 YQLDPTASISAK WTSGTNCTRFGIAAKYQLDPTASISAKVNN AAKYQLDPTASISAKVNNSSLIGVGYTQTL K Y Q A K V 2 0 0 1 0 1 0 0 0 1 1 1 0 0 1 2 1 0 1 0 0 0 12 0 1292.6612 A0A0A0MR02;A0A024QZT0;P45880;A0A024QZN9;B4DKM5 A0A0A0MR02 236 247 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 3.1363E-29 166.55 2 2 2.656 2.6541 0.65939 4 Median 2.2685 2.6688 0.20602 2 0 Median 3.1222 2.6395 0.2082 2 0 Median 805370000 247210000 558160000 692110000 219670000 472440000 113260000 27534000 85722000 15351 28 15768 40710;40711;40712;40713 63871;63872;63873;63874;63875;63876;63877;63878;63879 63871 9 YQLEIPENFTTR IGCRTIVYWGIGRNRYQLEIPENFTTRNLP RNRYQLEIPENFTTRNLPEEYELKSTKKGC R Y Q T R N 0 1 1 0 0 1 2 0 0 1 1 0 0 1 1 0 2 0 1 0 0 0 12 0 1509.7464 P52701;A0A087WWJ1;Q1L838 P52701 977 988 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.037481 34.692 1 0.61059 0.51047 NaN 1 Median NaN NaN NaN 0 0 Median 0.61059 0.51047 NaN 1 0 Median 3569900 2249000 1320900 0 0 0 3569900 2249000 1320900 15352 1601 15769 40714 63880 63880 1 YQLLQLVEPFGVISNHLILNK RVVHIMDFQRGKNLRYQLLQLVEPFGVISN VEPFGVISNHLILNKINEAFIEMATTEDAQ R Y Q N K I 0 0 2 0 0 2 1 1 1 2 5 1 0 1 1 1 0 0 1 2 0 0 21 0 2437.3733 D6REM6;A0A0R4J2E8;A8MXP9;P43243;Q68D11;D6R991;H0Y8T4;Q5CZA7;B4DF66;B3KM87;B4DRS1;D6RBI2;D6RE02;D6RIA2;D6RBK5 D6REM6 413 433 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 3 4.4766E-119 218.69 2 1 1.3572 1.5971 18.089 3 Plateau 1.3395 1.5615 3.1825 2 0 Median 1.4265 1.1443 NaN 1 0 Median 628450000 288320000 340130000 606430000 279100000 327320000 22019000 9217000 12802000 15353 542 15770 40715;40716;40717 63881;63882;63883;63884;63885 63884 5 YQPLASTASDNDFVTPEPR SQRAPSAKKPSTGSRYQPLASTASDNDFVT ASTASDNDFVTPEPRRTTRRHPNTQQRASK R Y Q P R R 2 1 1 2 0 1 1 0 0 0 1 0 0 1 3 2 2 0 1 1 0 0 19 0 2106.9858 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1325 1343 NCAPD2 Condensin complex subunit 1 yes no 2 6.5681E-12 103.21 3 2 1.1582 1.1632 14.473 4 Median 0.88925 1.0226 1.4807 2 0 Median 1.5135 1.3134 0.44023 2 0 Median 477160000 235940000 241220000 322640000 174200000 148440000 154520000 61742000 92776000 15354 908 15771 40718;40719;40720;40721;40722 63886;63887;63888;63889;63890;63891;63892;63893;63894;63895;63896;63897;63898;63899;63900 63898 15 YQPQTASELIGNELAIK SSKDSGTEDMLWTEKYQPQTASELIGNELA PQTASELIGNELAIKKLHSWLKDWKRRAEL K Y Q I K K 2 0 1 0 0 2 2 1 0 2 2 1 0 0 1 1 1 0 1 0 0 0 17 0 1873.9785 Q96QE3;H0UIC2;A0A075B754 Q96QE3 1058 1074 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.00019612 50.088 2 2 3.485 2.804 8.8172 2 Median NaN NaN NaN 0 0 Median 3.485 2.804 8.8172 2 0 Median 18473000 2775600 15698000 7962200 0 7962200 10511000 2775600 7735500 15355 1984 15772 40723;40724;40725;40726 63901;63902;63903;63904 63904 4 YQQELEEEIK FKKTKKMGGKDFSFRYQQELEEEIKELYEN DFSFRYQQELEEEIKELYENFCKHNGSKNV R Y Q I K E 0 0 0 0 0 2 4 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 10 0 1307.6245 F5H6I7;B4DXC4;Q6DD88 F5H6I7 395 404 ATL3 Atlastin-3 yes no 2 0.014309 55.908 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15356 1047 15773 40727 63905 63905 1 YQQGDFGYCPR RYILTNRGIAQMLEKYQQGDFGYCPRVYCE MLEKYQQGDFGYCPRVYCENQPMLPIGLSD K Y Q P R V 0 1 0 1 1 2 0 2 0 0 0 0 0 1 1 0 0 0 2 0 0 0 11 0 1389.5772 N0E4C7;Q5SRQ6;P67870;N0E466;Q5SRQ3;N0E472;A0A0G2JM12 N0E4C7 101 111 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991 Casein kinase II subunit beta yes no 2 7.9225E-05 98.033 3 2 0.56336 0.49476 43.865 3 Median 0.9207 0.99333 NaN 1 0 Median 0.54559 0.46761 7.9836 2 0 Median 44904000 28417000 16487000 37440000 23521000 13919000 7463700 4896600 2567100 15357 1358 15774 40728;40729;40730;40731;40732 63906;63907;63908;63909;63910 63908 5 YQQLFEDIR LKKLILSKGKTPALKYQQLFEDIRGQSDIA KTPALKYQQLFEDIRGQSDIAITKDMFEEA K Y Q I R G 0 1 0 1 0 2 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 9 0 1210.5982 B4DLA6;B3KMX0;A0A024R7U6;P33991;A4FS09 B4DLA6 780 788 MCM4 DNA replication licensing factor MCM4 yes no 2 0.00010981 109.71 1 1 1.0428 0.98549 57.605 2 Median 1.4404 1.481 NaN 1 0 Median 0.755 0.65577 NaN 1 0 Median 23484000 10106000 13377000 21255000 8790300 12464000 2229400 1316200 913150 15358 235 15775 40733;40734 63911;63912;63913 63911 3 YQSAPSQAPGNTIER MGRYRNSSWYSSGSRYQSAPSQAPGNTIER YQSAPSQAPGNTIERGQTHSAGTNGTGVSM R Y Q E R G 2 1 1 0 0 2 1 1 0 1 0 0 0 0 2 2 1 0 1 0 0 0 15 0 1617.7747 A0A024R101;Q86XZ4 A0A024R101 488 502 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 2 0.019232 57.175 1 1 1.197 1.0093 NaN 1 Median NaN NaN NaN 0 0 Median 1.197 1.0093 NaN 1 0 Median 6360000 4338700 2021300 3326200 3326200 0 3033800 1012500 2021300 15359 64 15776 40735;40736 63914;63915 63914 2 YQTQPVTLGEVEQVQSGK TRNRIDTRQRRMNARYQTQPVTLGEVEQVQ QPVTLGEVEQVQSGKLIPFSPAVNTSVSTV R Y Q G K L 0 0 0 0 0 4 2 2 0 0 1 1 0 0 1 1 2 0 1 3 0 0 18 0 1990.0007 O95425 O95425 850 867 SVIL Supervillin yes yes 2 2.8364E-05 71.558 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15360 1425 15777 40737 63916 63916 1 YQYGGLNSGR MCSFQILKPSEKKAKYQYGGLNSGRPVTPP EKKAKYQYGGLNSGRPVTPPRTANPPKKR_ K Y Q G R P 0 1 1 0 0 1 0 3 0 0 1 0 0 0 0 1 0 0 2 0 0 0 10 0 1113.5203 V9HW04;P62140;B4DJ75;B7ZB67 V9HW04 304 313 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 2 0.0030553 66.27 1 1 1.5796 1.446 21.618 2 Median 1.2577 1.2411 NaN 1 0 Median 1.9839 1.6849 NaN 1 0 Median 15852000 5541700 10310000 12868000 4597700 8270200 2984000 943990 2040000 15361 1633 15778 40738;40739 63917;63918;63919 63917 3 YQYGGLNSGRPVTPPR MCSFQILKPSEKKAKYQYGGLNSGRPVTPP QYGGLNSGRPVTPPRTANPPKKR_______ K Y Q P R T 0 2 1 0 0 1 0 3 0 0 1 0 0 0 3 1 1 0 2 1 0 0 16 1 1760.8958 V9HW04;P62140;B4DJ75 V9HW04 304 319 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 3 9.6689E-19 114.31 1 2 2.1026 1.726 26.004 3 Median 1.0192 1.2197 NaN 1 0 Median 2.1425 1.8714 11.436 2 0 Median 328740000 147470000 181270000 271560000 129430000 142130000 57184000 18037000 39147000 15362 1633 15779 40740;40741;40742 63920;63921;63922;63923;63924;63925;63926 63920 7 YRDQFTDQQK HKELKRIFHLWRCKKYRDQFTDQQKLIYEE WRCKKYRDQFTDQQKLIYEEKLEASELFKD K Y R Q K L 0 1 0 2 0 3 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 10 1 1327.6157 E9PDF6;B0I1S9;O43795;H7C2Y7;B3KQI2 E9PDF6 897 906 MYO1B Unconventional myosin-Ib yes no 2 7.6664E-05 102.06 1 1.8292 2.0246 NaN 1 Median 1.8292 2.0246 NaN 1 0 Median NaN NaN NaN 0 0 Median 7614200 3581200 4033100 7614200 3581200 4033100 0 0 0 15363 805 15780 40743 63927 63927 1 YRPGTVALR RKSAPSTGGVKKPHRYRPGTVALREIRRYQ VKKPHRYRPGTVALREIRRYQKSTELLIRK R Y R L R E 1 2 0 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 0 0 9 1 1031.5876 K7EK07;B2R4P9;P84243;B4E380;Q16695;B2R6Y1;K7EMV3;B4DEB1;A8K4Y7;K7ES00;Q6NXT2;K7EP01;Q6TXQ4;P68431;Q5TEC6;Q71DI3 K7EK07 42 50 H3F3B;H3F3A;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2;3 3.026E-23 161.79 53 6 0.70467 0.76861 13.897 16 Median 0.69298 0.7885 12.974 12 0 Median 0.8076 0.72065 14.109 4 0 Median 39464000000 33080000000 6384400000 35946000000 30610000000 5336000000 3518400000 2470000000 1048400000 15364 827;1661;1865;1828 15781 40744;40745;40746;40747;40748;40749;40750;40751;40752;40753;40754;40755;40756;40757;40758;40759;40760;40761;40762;40763;40764;40765;40766;40767;40768;40769;40770;40771;40772;40773;40774;40775;40776;40777;40778;40779;40780;40781;40782;40783;40784;40785;40786;40787;40788;40789;40790;40791;40792;40793;40794;40795;40796;40797;40798;40799;40800;40801;40802 63928;63929;63930;63931;63932;63933;63934;63935;63936;63937;63938;63939;63940;63941;63942;63943;63944;63945;63946;63947;63948;63949;63950;63951;63952;63953;63954;63955;63956;63957;63958;63959;63960;63961;63962;63963;63964;63965;63966;63967;63968;63969;63970;63971;63972;63973;63974;63975;63976;63977;63978;63979;63980;63981;63982;63983;63984;63985;63986;63987;63988;63989;63990;63991;63992;63993;63994;63995;63996;63997;63998;63999;64000;64001;64002;64003;64004;64005;64006;64007;64008;64009;64010;64011;64012;64013;64014;64015;64016;64017;64018;64019;64020;64021 63944 94 YRTEAHQDVVGR SLKQLYTVTMDVHSRYRTEAHQDVVGRFNE HSRYRTEAHQDVVGRFNERFILSLASCKKC R Y R G R F 1 2 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 1 2 0 0 12 1 1429.7062 Q05CW7;E9PMU0;Q9H0A0;A0A087WV29 Q9H0A0 171 182 NAT10 N-acetyltransferase 10 no no 3 9.8743E-05 85.522 1 0.86292 0.90545 NaN 1 Median 0.86292 0.90545 NaN 1 0 Median NaN NaN NaN 0 0 Median 13857000 7354900 6502400 13857000 7354900 6502400 0 0 0 15365 2023;1687 15782 40803 64022;64023 64023 2 YSDADIEPFLK NTKEGLAELYEYKKKYSDADIEPFLKNSSQ YKKKYSDADIEPFLKNSSQFFQSYVERGLR K Y S L K N 1 0 0 2 0 0 1 0 0 1 1 1 0 1 1 1 0 0 1 0 0 0 11 0 1296.6238 Q14008;Q8IYN5;H0YDX5 Q14008 1860 1870 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.00026946 79.148 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15366 1725 15783 40804 64024 64024 1 YSDDTPLPTPSYK HRLSTRDRDRSVRGKYSDDTPLPTPSYKYN GKYSDDTPLPTPSYKYNEWADDRRHLGSTP K Y S Y K Y 0 0 0 2 0 0 0 0 0 0 1 1 0 0 3 2 2 0 2 0 0 0 13 0 1482.6878 A8K6G9;Q92620 A8K6G9 261 273 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.032023 42.336 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1768700 0 1768700 1768700 0 1768700 0 0 0 15367 760 15784 40805 64025;64026 64025 2 YSDIDIILLK RHLPKLIPVLVNGMKYSDIDIILLKGDVEE VNGMKYSDIDIILLKGDVEEDETIPDSEQD K Y S L K G 0 0 0 2 0 0 0 0 0 3 2 1 0 0 0 1 0 0 1 0 0 0 10 0 1191.6751 A0A024RAM0;Q92973 A0A024RAM0 318 327 TNPO1 Transportin-1 yes no 2 9.0954E-05 97.635 2 1.4495 1.483 0.55214 2 Median 1.4495 1.483 0.55214 2 0 Median NaN NaN NaN 0 0 Median 20982000 8764300 12218000 20982000 8764300 12218000 0 0 0 15368 309 15785 40806;40807 64027;64028;64029;64030 64030 4 YSDLLSQSLNQPLTSSK ALDLHLDFIVGQTEKYSDLLSQSLNQPLTS DLLSQSLNQPLTSSKAGSSPCLGSSSAASS K Y S S K A 0 0 1 1 0 2 0 0 0 0 4 1 0 0 1 5 1 0 1 0 0 0 17 0 1879.9527 A0A0A0MS59;Q6ZRS2;A0A0C4DFX4;G1UI29;Q6P4A2 A0A0A0MS59 46 62 SRCAP Helicase SRCAP yes no 2 0.018605 26.232 1 1.1595 0.94175 NaN 1 Median NaN NaN NaN 0 0 Median 1.1595 0.94175 NaN 1 0 Median 2889600 1108200 1781400 0 0 0 2889600 1108200 1781400 15369 476 15786 40808 64031 64031 1 YSDLQNLAK ______________________________ ELDSLKYSDLQNLAKSLGLRANLRATKLLK K Y S A K S 1 0 1 1 0 1 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1050.5346 Q9BXS6;A8K4B4;H0YKA7 Q9BXS6 14 22 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.00085417 93.429 1 0.51349 0.4201 NaN 1 Median NaN NaN NaN 0 0 Median 0.51349 0.4201 NaN 1 0 Median 4822200 3147200 1675100 0 0 0 4822200 3147200 1675100 15370 2014 15787 40809 64032;64033 64033 2 YSDLTTLVAFPSSSVYPTK SVHYCPATKKTIERRYSDLTTLVAFPSSSV TTLVAFPSSSVYPTKDEENNPLETEYGLSV R Y S T K D 1 0 0 1 0 0 0 0 0 0 2 1 0 1 2 4 3 0 2 2 0 0 19 0 2075.0463 Q53HJ4;B2R7C5;A0A0S2Z4T1;P25205;Q8NHX6;A0A0S2Z492;B4DUQ9;J3KQ69;B4DS46 Q53HJ4 159 177 MCM3;HCC5 DNA helicase;DNA replication licensing factor MCM3 yes no 2 2.3943E-07 87.18 1 2 0.78949 0.62894 39.804 3 Median 1.2285 1.206 NaN 1 0 Median 0.75268 0.60692 5.0394 2 0 Median 37737000 19058000 18679000 23018000 10946000 12072000 14719000 8111700 6607100 15371 568 15788 40810;40811;40812 64034;64035;64036;64037;64038 64035 5 YSDMIVAAIQAEK PKRAKASKKSTDHPKYSDMIVAAIQAEKNR PKYSDMIVAAIQAEKNRAGSSRQSIQKYIK K Y S E K N 3 0 0 1 0 1 1 0 0 2 0 1 1 0 0 1 0 0 1 1 0 0 13 0 1437.7174 P07305 P07305 28 40 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 3.0367E-09 118.9 4 5 0.74267 0.71293 119.96 8 Median 1.7997 2.0175 2.3976 4 0 Median 0.26094 0.20956 11.161 4 0 Median 353360000 149840000 203520000 303730000 109140000 194590000 49631000 40696000 8934600 15372 1451 15789;15790 40813;40814;40815;40816;40817;40818;40819;40820;40821 64039;64040;64041;64042;64043;64044;64045;64046;64047;64048 64040 1154 10 YSEAITQSVLK APILQNIGQLGLLARYSEAITQSVLKELQN LLARYSEAITQSVLKELQNRRAGPATSPPK R Y S L K E 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 1 0 1 1 0 0 11 0 1237.6554 O60287 O60287 1075 1085 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00033089 86.898 1 2 1.2229 1.0971 2.4375 2 Median 1.0837 1.1161 NaN 1 0 Median 1.3801 1.0783 NaN 1 0 Median 34676000 18836000 15840000 28879000 15159000 13720000 5797000 3676900 2120000 15373 1392 15791 40822;40823;40824 64049;64050;64051;64052;64053 64050 5 YSESAGGFYYVESGK VCSIGTANAVAGAVKYSESAGGFYYVESGK YSESAGGFYYVESGKLFSVTRNRFIHWKTS K Y S G K L 1 0 0 0 0 0 2 3 0 0 0 1 0 1 0 3 0 0 3 1 0 0 15 0 1642.7151 G3V198;Q12769;E9PR16;E9PSI3 G3V198 44 58 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.0002224 69.864 2 1 1.2025 1.1809 12.399 3 Median 1.1773 1.2058 2.9559 2 0 Median 1.2025 0.97576 NaN 1 0 Median 19302000 9343400 9958600 17395000 8341000 9054000 1906900 1002400 904570 15374 1271 15792 40825;40826;40827 64054;64055;64056;64057 64056 4 YSEVDDSLPSGGEK SNQIQTQRTARAKRKYSEVDDSLPSGGEKP KYSEVDDSLPSGGEKPSKNETGLLSSIKKF K Y S E K P 0 0 0 2 0 0 2 2 0 0 1 1 0 0 1 3 0 0 1 1 0 0 14 0 1481.6522 A0A024R5Q8;Q05D32;H0YMH7;H0YNU2;H0YNW9 A0A024R5Q8 27 40 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 2.446E-10 124.42 2 2 1.1343 1.0278 7.6534 4 Median 0.9331 0.96292 5.099 2 0 Median 1.3398 1.0833 3.3158 2 0 Median 73249000 35626000 37623000 58996000 30085000 28911000 14252000 5540700 8711600 15375 187 15793 40828;40829;40830;40831 64058;64059;64060;64061;64062;64063;64064;64065;64066;64067;64068 64059 11 YSEVFEAINITNNEK NQDDYQLVRKLGRGKYSEVFEAINITNNEK YSEVFEAINITNNEKVVVKILKPVKKKKIK K Y S E K V 1 0 3 0 0 0 3 0 0 2 0 1 0 1 0 1 1 0 1 1 0 0 15 0 1769.8472 Q2I0Y7;E7EU96;B5BUH5;B2R6D7;Q5U5J2;Q8NEV1;P68400;V9GYA2;V9GY80 Q2I0Y7 50 64 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha 3;Casein kinase II subunit alpha yes no 2 0.0001138 81.625 3 1 0.87239 0.7745 51.471 2 Median 1.1137 1.1145 NaN 1 0 Median 0.6834 0.53822 NaN 1 0 Median 12787000 7164200 5623000 10753000 6298000 4454800 2034400 866210 1168200 15376 840 15794 40832;40833;40834;40835 64069;64070;64071;64072;64073;64074 64070 6 YSEVFEAINITNNER NQDDYQLVRKLGRGKYSEVFEAINITNNER YSEVFEAINITNNERVVVKILKPVKKKKIK K Y S E R V 1 1 3 0 0 0 3 0 0 2 0 0 0 1 0 1 1 0 1 1 0 0 15 0 1797.8533 P19784;H3BNI9 P19784 51 65 CSNK2A2 Casein kinase II subunit alpha yes no 2 1.6187E-05 88.338 1 1 1.2821 1.1945 69.019 2 Median 1.9417 1.946 NaN 1 0 Median 0.84663 0.73322 NaN 1 0 Median 13277000 4794900 8481800 11313000 3720800 7591900 1964000 1074100 889930 15377 1501 15795 40836;40837 64075;64076;64077 64076 3 YSFGATCVK YNPTTYQMDVNPEGKYSFGATCVKKCPRNY VNPEGKYSFGATCVKKCPRNYVVTDHGSCV K Y S V K K 1 0 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 0 1 1 0 0 9 0 1031.4746 Q59FL8;Q504U8;E7BSV0;E9PFD7;F2YGG7;Q2TTR7;A9CB80;A8K2T7;P00533;B7Z2I3;A2VCQ7;Q147T7;Q68GS6 Q59FL8 156 164 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor yes no 2 0.043105 48.794 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15378 713 15796 40838 64078 64078 1 YSFIQALVR KLLDIEGLYSKVRSRYSFIQALVRRIRGLL SKVRSRYSFIQALVRRIRGLLRISRN____ R Y S V R R 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 1 1 0 0 9 0 1095.6077 Q92621;B4DE72;Q6P486;Q4VBX7;Q6DKH1 Q92621 1993 2001 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.024092 55.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2009300 0 2009300 2009300 0 2009300 0 0 0 15379 1950 15797 40839 64079 64079 1 YSFLQFDPAPR CGNQAAIMELDDTLKYSFLQFDPAPRRGEP DTLKYSFLQFDPAPRRGEPHVTRRTPDYFL K Y S P R R 1 1 0 1 0 1 0 0 0 0 1 0 0 2 2 1 0 0 1 0 0 0 11 0 1339.6561 Q6I9T8;B3KUN1;P67775;B3KQ51;Q8WZ56;Q5U0I7;B3KRM2;A0A140VJS0;P62714;H0YBN9 Q6I9T8 284 294 PPP2CA;PPP2CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 2 0.00014001 112.36 2 2 1.2456 1.1928 60.965 4 Median 1.8966 1.9834 4.5552 2 0 Median 0.8264 0.69348 9.3359 2 0 Median 56259000 22960000 33298000 45174000 16749000 28425000 11084000 6211100 4873000 15380 948 15798 40840;40841;40842;40843 64080;64081;64082;64083;64084;64085;64086;64087;64088 64081 9 YSGAYGASVSDEELK DRMKESSPSGSKSQRYSGAYGASVSDEELK YSGAYGASVSDEELKRRVAEELALEQAKKE R Y S L K R 2 0 0 1 0 0 2 2 0 0 1 1 0 0 0 3 0 0 2 1 0 0 15 0 1574.71 A4D1N4;C9JRZ6;Q9NX63;B7Z1X9;F8WAR4 A4D1N4 49 63 CHCHD3 MICOS complex subunit MIC19 yes no 2 1.9788E-30 154.36 2 1 1.1163 1.2204 33.134 3 Median 1.0402 1.1538 7.9354 2 0 Median 2.475 2.0313 NaN 1 0 Median 127360000 64130000 63234000 122100000 62491000 59614000 5258800 1638700 3620000 15381 664 15799 40844;40845;40846 64089;64090;64091;64092;64093 64090 5 YSGELSGIR RRRGQVREVRKEEQRYSGELSGIRAGVKKS RKEEQRYSGELSGIRAGVKKSIKLK_____ R Y S I R A 0 1 0 0 0 0 1 2 0 1 1 0 0 0 0 2 0 0 1 0 0 0 9 0 980.49271 Q9NQZ2 Q9NQZ2 461 469 UTP3 Something about silencing protein 10 yes yes 2 0.00096668 91.853 2 2 1.1347 1.0809 6.9153 4 Median 0.98395 1.1283 8.9682 2 0 Median 1.257 1.063 5.243 2 0 Median 231180000 115940000 115250000 218510000 110340000 108160000 12676000 5590700 7085700 15382 2063 15800 40847;40848;40849;40850 64094;64095;64096;64097;64098;64099;64100;64101 64094 8 YSGPEDDAAISLAFSK KEYFADMKRHRIQFKYSGPEDDAAISLAFS SGPEDDAAISLAFSKKQIDDRKEWLTNFME K Y S S K K 3 0 0 2 0 0 1 1 0 1 1 1 0 1 1 3 0 0 1 0 0 0 16 0 1669.7835 P11388 P11388 640 655 TOP2A DNA topoisomerase 2-alpha yes yes 2 6.803E-68 188.96 4 3 1.3207 1.1527 14.789 5 Median 0.76162 0.90713 3.383 2 0 Median 1.3706 1.1614 3.6201 3 0 Median 3525800000 1798400000 1727500000 2249400000 1262200000 987170000 1276400000 536120000 740310000 15383 1471 15801 40851;40852;40853;40854;40855;40856;40857 64102;64103;64104;64105;64106;64107;64108;64109;64110;64111;64112;64113;64114;64115;64116;64117;64118;64119;64120;64121;64122 64104 21 YSGSEGSTQTLTK ELETAMGMIIDVFSRYSGSEGSTQTLTKGE SRYSGSEGSTQTLTKGELKVLMEKELPGFL R Y S T K G 0 0 0 0 0 1 1 2 0 0 1 1 0 0 0 3 3 0 1 0 0 0 13 0 1357.6361 P25815 P25815 18 30 S100P Protein S100-P yes yes 2 0.00015572 72.652 1 1.1274 1.1649 NaN 1 Median 1.1274 1.1649 NaN 1 0 Median NaN NaN NaN 0 0 Median 4784400 1628200 3156200 4784400 1628200 3156200 0 0 0 15384 1519 15802 40858 64123;64124 64123 2 YSGSYNDYLR LDYRRLPDAHSDYARYSGSYNDYLRAAQMH SDYARYSGSYNDYLRAAQMHSGYQRRM___ R Y S L R A 0 1 1 1 0 0 0 1 0 0 1 0 0 0 0 2 0 0 3 0 0 0 10 0 1236.5411 A0A0S2Z4Z0;Q96PK6;B4DNG4 A0A0S2Z4Z0 648 657 RBM14 RNA-binding protein 14 yes no 2 2.0555E-11 125.16 2 2 1.5883 1.6915 42.889 3 Plateau 1.5904 1.696 NaN 1 0 Median 0.94698 0.80693 0.83746 2 0 Median 54747000 13808000 40939000 45006000 8829200 36177000 9740900 4978700 4762200 15385 571 15803 40859;40860;40861;40862 64125;64126;64127;64128;64129;64130;64131 64125 7 YSGTLNLDR ENQTPEFFQDVCKPKYSGTLNLDRVTREAC DVCKPKYSGTLNLDRVTREACPELDYFVVF K Y S D R V 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 9 0 1037.5142 A0A0U1RQF0;P49327 A0A0U1RQF0 1994 2002 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0019956 78.149 2 1.5536 1.6527 17.908 2 Median 1.5536 1.6527 17.908 2 0 Median NaN NaN NaN 0 0 Median 57488000 20720000 36768000 57488000 20720000 36768000 0 0 0 15386 587 15804 40863;40864 64132;64133 64133 2 YSHEVLSEENFK LGRCNYSQSERNLCKYSHEVLSEENFKVLK LCKYSHEVLSEENFKVLKNHELSGLNKEEL K Y S F K V 0 0 1 0 0 0 3 0 1 0 1 1 0 1 0 2 0 0 1 1 0 0 12 0 1480.6834 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 108 119 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 3 0.006359 25.438 1 1.2454 1.2203 NaN 1 Median 1.2454 1.2203 NaN 1 0 Median NaN NaN NaN 0 0 Median 21387000 7638500 13748000 21387000 7638500 13748000 0 0 0 15387 1873 15805 40865 64134 64134 1 YSLDPENPTK ______________________________ ______________________________ R Y S T K S 0 0 1 1 0 0 1 0 0 0 1 1 0 0 2 1 1 0 1 0 0 0 10 0 1162.5506 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81;J3KSJ0 A0A087WXM6 4 13 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2 3.5731E-16 154.75 3 2 0.798 0.8675 7.2588 4 Linear 0.72859 0.86516 0.64826 2 0 Median 0.87319 0.76375 1.4932 2 0 Median 2533800000 1629000000 904800000 1999400000 1340500000 658910000 534390000 288490000 245900000 15388 106 15806 40866;40867;40868;40869;40870 64135;64136;64137;64138;64139;64140;64141;64142;64143;64144 64136 10 YSLQNTEESLR PRIDLIVFVVNLHSKYSLQNTEESLRHVDA LHSKYSLQNTEESLRHVDASFFLGKVCFLA K Y S L R H 0 1 1 0 0 1 2 0 0 0 2 0 0 0 0 2 1 0 1 0 0 0 11 0 1338.6416 A0A024R1Q3;Q9NSP4;B1AHQ7;B1AHQ6 A0A024R1Q3 76 86 C22orf18;CENPM Centromere protein M yes no 2 7.6323E-08 107.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11793000 0 11793000 11793000 0 11793000 0 0 0 15389 83 15807 40871 64145 64145 1 YSLQSANASSLSSGQLK SYGLGSEQRSQAPARYSLQSANASSLSSGQ LQSANASSLSSGQLKSPSLSQSQASRVLGQ R Y S L K S 2 0 1 0 0 2 0 1 0 0 3 1 0 0 0 6 0 0 1 0 0 0 17 0 1739.869 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 392 408 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 1.5227E-68 192.65 2 2 1.9376 1.524 40.935 3 Median 0.72426 0.8108 NaN 1 0 Median 2.052 1.6313 9.6282 2 0 Median 114400000 66633000 47763000 80034000 55780000 24254000 34362000 10853000 23509000 15390 878 15808 40872;40873;40874;40875 64146;64147;64148;64149;64150;64151;64152;64153;64154 64148 9 YSLRDEFPLLTTK RTGTGTLSVFGMQARYSLRDEFPLLTTKRV ARYSLRDEFPLLTTKRVFWKGVLEELLWFI R Y S T K R 0 1 0 1 0 0 1 0 0 0 3 1 0 1 1 1 2 0 1 0 0 0 13 1 1581.8403 Q53Y97;Q53FB7;A8K9A5;P04818 Q53Y97 65 77 TYMS Thymidylate synthase yes no 3 0.028875 43.184 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4616600 0 4616600 4616600 0 4616600 0 0 0 15391 782 15809 40876 64155 64155 1 YSNEDTLSVALPYFWEHFDK HLPKSTFVLDEFKRKYSNEDTLSVALPYFW TLSVALPYFWEHFDKDGWSLWYSEYRFPEE K Y S D K D 1 0 1 2 0 0 2 0 1 0 2 1 0 2 1 2 1 1 2 1 0 0 20 0 2460.1274 Q53YD7;P26641;B4DUP0 Q53YD7 297 316 EEF1G Elongation factor 1-gamma yes no 3 0.0015703 28.65 1 2.553 2.5774 NaN 1 Median 2.553 2.5774 NaN 1 0 Median NaN NaN NaN 0 0 Median 8188400 2741700 5446600 8188400 2741700 5446600 0 0 0 15392 1522 15810 40877 64156 64156 1 YSNENLDLAR TRNYLDWLTSIPWGKYSNENLDLARAQAVL IPWGKYSNENLDLARAQAVLEEDHYGMEDV K Y S A R A 1 1 2 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 10 0 1193.5677 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;A4VCH6;K7ER27 K7EJE8 343 352 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 5.322E-16 140.45 2 1 2.4412 2.3277 74.776 2 Median 3.8564 3.9497 NaN 1 0 Median 1.5453 1.3718 NaN 1 0 Median 57676000 7428900 50247000 55292000 6923400 48368000 2383900 505510 1878400 15393 946 15811 40878;40879;40880 64157;64158;64159 64158 3 YSPTSPTYSPTSPK TYSPTSPVYTPTSPKYSPTSPTYSPTSPKY KYSPTSPTYSPTSPKYSPTSPTYSPTSPKG K Y S P K Y 0 0 0 0 0 0 0 0 0 0 0 1 0 0 4 4 3 0 2 0 0 0 14 0 1511.7144 P24928;B4DET1 P24928 1909 1922 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.031224 42.976 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15394 1514 15812 40881 64160 64160 1 YSPTTSHVGA LLLSGGADNKLYSYRYSPTTSHVGA_____ LYSYRYSPTTSHVGA_______________ R Y S G A - 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 2 2 0 1 1 0 0 10 0 1018.472 Q53T99;Q9GZL7;B4DRY7 Q53T99 414 423 WDR12 Ribosome biogenesis protein WDR12 yes no 2 0.00081423 89.369 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 309440000 0 0 272710000 0 0 36726000 0 0 15395 1792 15813 40882;40883;40884;40885 64161;64162;64163;64164 64161 4 YSQLVVETIR SKKRKNSKKKNQPGKYSQLVVETIRRLGER NQPGKYSQLVVETIRRLGERNGSSLAKIYT K Y S I R R 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 0 10 0 1206.6608 Q92522 Q92522 48 57 H1FX Histone H1x yes yes 2 1.4636E-08 122.96 2 2 0.88881 1.0455 4.0304 2 Median 0.88881 1.0455 4.0304 2 0 Median NaN NaN NaN 0 0 Median 933340000 476670000 456670000 933340000 476670000 456670000 0 0 0 15396 1946 15814 40886;40887;40888;40889 64165;64166;64167;64168;64169;64170;64171;64172 64169 8 YSQSDLEQTK RQVQSQAHGLQMRLKYSQSDLEQTKTRHLA QMRLKYSQSDLEQTKTRHLALNLQEKSKLE K Y S T K T 0 0 0 1 0 2 1 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 10 0 1197.5513 Q14683;G8JLG1;A8K7A6;Q6P2R1;Q6MZR8;B7Z709 Q14683 714 723 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.012842 60.398 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1166300 0 1166300 0 0 0 1166300 0 1166300 15397 1739 15815 40890 64173 64173 1 YSQVLANGLDNK PDWFLNRQKDVKDGKYSQVLANGLDNKLRE DGKYSQVLANGLDNKLREDLERLKKIRAHR K Y S N K L 1 0 2 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1320.6674 P62269;J3JS69 P62269 95 106 RPS18 40S ribosomal protein S18 yes no 2 2.0025E-08 143.24 2 2 1.0577 1.0228 27.065 4 Median 1.0932 1.2478 0.5001 2 0 Median 0.98029 0.78808 9.2608 2 0 Median 345450000 154370000 191080000 333890000 148550000 185340000 11566000 5823300 5742300 15398 1639 15816 40891;40892;40893;40894 64174;64175;64176;64177;64178;64179;64180 64177 7 YSQVLGLGGR RDSTHLICAFANTPKYSQVLGLGGRIVRKE ANTPKYSQVLGLGGRIVRKEWVLDCHRMRR K Y S G R I 0 1 0 0 0 1 0 3 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1048.5665 F5H8D7;A0A024R0S8;Q59HH7;B4DTD3;P18887;V9VB20;M4WFF9 F5H8D7 339 348 XRCC1 DNA repair protein XRCC1 yes no 2 4.906E-05 101.25 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118600000 107570000 11034000 118600000 107570000 11034000 0 0 0 15399 58 15817 40895;40896;40897 64181;64182;64183 64181 3 YSQYLDR RALVENCLVPDLWIRYSQYLDRQLKVKDLV LVPDLWIRYSQYLDRQLKVKDLVLSVHNRA R Y S D R Q 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 7 0 943.43995 Q15020;B4DRG9;F8VV04;B4E3R6 Q15020 350 356 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.036131 71.134 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15400 1748 15818 40898 64184 64184 1 YSSDVQEMILSSATADR SVAVNVAPGRLCAGRYSSDVQEMILSSATA SDVQEMILSSATADRIPIAVSGVRGMGFLM R Y S D R I 2 1 0 2 0 1 1 0 0 1 1 0 1 0 0 4 1 0 1 1 0 0 17 0 1871.8571 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2505 2521 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.013763 41.092 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15401 1205 15819 40899 64185 64185 916 1 YSSEVATESPLDFTK GDSFLNEDLNQLIKRYSSEVATESPLDFTK YSSEVATESPLDFTKYLKTSLH________ R Y S T K Y 1 0 0 1 0 0 2 0 0 0 1 1 0 1 1 3 2 0 1 1 0 0 15 0 1672.7832 A8K905;Q8WTT2 A8K905 779 793 NOC3L Nucleolar complex protein 3 homolog yes no 2 1.1173E-05 92.112 2 1 1.2651 1.2142 10.316 3 Median 1.152 1.2507 14.386 2 0 Median 1.4854 1.2142 NaN 1 0 Median 87106000 39050000 48057000 81539000 36710000 44828000 5567600 2339400 3228200 15402 780 15820 40900;40901;40902 64186;64187;64188;64189;64190 64187 5 YSSSFCTHDR AQYKCLVIKYAKDTRYSSSFCTHDRNTMEA AKDTRYSSSFCTHDRNTMEALPACLLRDVA R Y S D R N 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 3 1 0 1 0 0 0 10 0 1258.5037 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3;K7ES52;K7ERJ1;K7ENW5 B5BUF9 61 70 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2 4.5895E-06 109.29 2 2.1147 2.1745 1.1025 2 Median 2.1147 2.1745 1.1025 2 0 Median NaN NaN NaN 0 0 Median 22564000 7374300 15189000 22564000 7374300 15189000 0 0 0 15403 252 15821 40903;40904 64191;64192;64193 64191 3 YSTPTYTGGQSESHVQSASEDTVTER RTDAPLMQFKSILLKYSTPTYTGGQSESHV ESHVQSASEDTVTERVEMSVNDKAEASGCR K Y S E R V 1 1 0 1 0 2 3 2 1 0 0 0 0 0 1 5 5 0 2 2 0 0 26 0 2816.2373 B4DXX1;B2R713;Q7Z2T5 B4DXX1 535 560 TRMT1L TRMT1-like protein yes no 3 0.00027232 33.265 2 2 0.87458 0.81191 29.824 4 Median 1.0868 1.0818 11.523 2 0 Median 0.74657 0.65399 1.5192 2 0 Median 37262000 16512000 20750000 32618000 14069000 18550000 4643400 2443400 2200000 15404 846 15822 40905;40906;40907;40908 64194;64195;64196;64197;64198;64199;64200;64201;64202 64195 9 YSTSGSSGLTTGK LCGKFVLRPLRPCRRYSTSGSSGLTTGKIA RRYSTSGSSGLTTGKIAGAGLLFVGGGIGG R Y S G K I 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 4 3 0 1 0 0 0 13 0 1244.5885 Q16891;B9A067;B4DQY2;B4DKR1;B4DT20;Q05DN3 Q16891 33 45 IMMT MICOS complex subunit MIC60 no no 2 1.1371E-08 113.69 2 1 0.87462 0.91255 12.066 2 Median 0.87462 0.91255 12.066 2 0 Median NaN NaN NaN 0 0 Median 69934000 34695000 35238000 68621000 34695000 33926000 1312400 0 1312400 15405 1774 15823 40909;40910;40911 64203;64204;64205;64206;64207;64208 64206 6 YSTWEPEENILDAR GRMEYLVKWKGWSQKYSTWEPEENILDARL KYSTWEPEENILDARLLAAFEEREREMELY K Y S A R L 1 1 1 1 0 0 3 0 0 1 1 0 0 0 1 1 1 1 1 0 0 0 14 0 1721.7897 Q9HC52;C9J6K3;C9JM54 Q9HC52 39 52 CBX8 Chromobox protein homolog 8 yes no 2 0.0047989 47.288 2 2 1.3704 1.1368 22.143 3 Median 0.77914 0.78478 NaN 1 0 Median 1.387 1.1509 1.7521 2 0 Median 39821000 24508000 15313000 21056000 17170000 3886800 18765000 7338200 11427000 15406 2052 15824 40912;40913;40914;40915 64209;64210;64211;64212;64213;64214;64215;64216 64213 8 YSVADIER KQENTRLQNIIDNQKYSVADIERINHERNE NIIDNQKYSVADIERINHERNELQQTINKL K Y S E R I 1 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 8 0 951.46616 A8K031;O14777;Q05DQ6 A8K031 361 368 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.031882 61.999 1 1 0.9538 0.82079 NaN 1 Median NaN NaN NaN 0 0 Median 0.9538 0.82079 NaN 1 0 Median 2677800 1477600 1200200 0 0 0 2677800 1477600 1200200 15407 696 15825 40916;40917 64217;64218 64217 2 YSVDIPLDK SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD HLMPTRYSVDIPLDKTVVNKDVFRDPALKR R Y S D K T 0 0 0 2 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 0 9 0 1048.5441 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7;K7EQQ9 E4W6B6 85 93 RPL27 60S ribosomal protein L27 yes no 2 0.00010981 109.71 2 2 0.84798 0.85488 18.009 4 Median 0.83895 0.99937 1.6056 2 0 Median 0.85411 0.73212 1.4426 2 0 Median 2391000000 1282000000 1109000000 2202600000 1177900000 1024700000 188400000 104100000 84292000 15408 93 15826 40918;40919;40920;40921 64219;64220;64221;64222;64223;64224;64225;64226;64227 64223 9 YSVQLLTPANLLAK ALNHLGEIGTKTTLRYSVQLLTPANLLAKI RYSVQLLTPANLLAKINGKDSIEKEHVEEI R Y S A K I 2 0 1 0 0 1 0 0 0 0 4 1 0 0 1 1 1 0 1 1 0 0 14 0 1529.8817 B5BUB1;Q9Y265;H7C4G5 B5BUB1 405 418 RUVBL1 RuvB-like 1 yes no 2 3.8815E-05 94.791 2 2 0.96382 0.93915 6.9684 4 Median 0.78104 0.8824 2.127 2 0 Median 1.1929 0.9931 1.2125 2 0 Median 369230000 196840000 172390000 279100000 156020000 123080000 90136000 40820000 49315000 15409 1076 15827 40922;40923;40924;40925 64228;64229;64230;64231;64232;64233;64234;64235 64231 8 YSVQTADHR WGVDSLITLAFQDQRYSVQTADHRFLRHDG AFQDQRYSVQTADHRFLRHDGRLVARPEPA R Y S H R F 1 1 0 1 0 1 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 0 9 0 1075.5047 B3KTA3;Q16658 B3KTA3 165 173 FSCN1 Fascin yes no 2 3.4108E-08 146.81 1 4.07 4.0914 NaN 1 Median 4.07 4.0914 NaN 1 0 Median NaN NaN NaN 0 0 Median 9268500 1960700 7307800 9268500 1960700 7307800 0 0 0 15410 942 15828 40926 64236 64236 1 YSYLQQDLPDNPER AYPSLILSDNLRQVRYSYLQQDLPDNPERF RYSYLQQDLPDNPERFNLFPCVLGSPCFIA R Y S E R F 0 1 1 2 0 2 1 0 0 0 2 0 0 0 2 1 0 0 2 0 0 0 14 0 1736.8006 P14373;A0A140T9Q6;A0A140T9B9;A0A140T9N6;A0A140T9V9;H0Y551 P14373 340 353 TRIM27 Zinc finger protein RFP yes no 2 4.9568E-22 132.32 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11240000 0 11240000 11240000 0 11240000 0 0 0 15411 1480 15829 40927;40928;40929 64237;64238;64239 64238 3 YTAESSDTLCPR IVMPTTKEKCPRCWKYTAESSDTLCPRCAE CWKYTAESSDTLCPRCAEVVSGK_______ K Y T P R C 1 1 0 1 1 0 1 0 0 0 1 0 0 0 1 2 2 0 1 0 0 0 12 0 1398.6085 A8K5W7;Q9NSE4 A8K5W7 921 932 IARS2 Isoleucine--tRNA ligase, mitochondrial yes no 2 4.1893E-05 96.342 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3144000 0 3144000 3144000 0 3144000 0 0 0 15412 753 15830 40930 64240 64240 1 YTCGEAPDYDR RLLLEFTDTSYEEKRYTCGEAPDYDRSQWL EEKRYTCGEAPDYDRSQWLDVKFKLDLDFP R Y T D R S 1 1 0 2 1 0 1 1 0 0 0 0 0 0 1 0 1 0 2 0 0 0 11 0 1345.5245 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3 Q6FGJ9 37 47 GSTM3 Glutathione S-transferase Mu 3 yes no 2 2.4269E-05 103.26 2 1 2.6057 2.7523 22.512 3 Plateau 2.598 2.7006 2.6778 2 0 Median 2.1147 1.8312 NaN 1 0 Median 39655000 12298000 27357000 38037000 11794000 26242000 1619000 504060 1114900 15413 1503 15831 40931;40932;40933 64241;64242;64243;64244;64245 64243 5 YTCSFCGK ______________________________ EISQHAKYTCSFCGKTKMKRRAVGIWHCGS K Y T G K T 0 0 0 0 2 0 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 0 8 0 1021.3997 C9J4Z3;P61513;M0R0A1;Q6P4E4;E9PEL3;M0R2L6;G5E9R3;A6NKH3 C9J4Z3 13 20 RPL37A;RPL37AP8 60S ribosomal protein L37a;Putative 60S ribosomal protein L37a-like protein yes no 2 0.0021178 102.71 2 2 0.76217 0.75332 14.147 4 Median 0.73062 0.84547 1.8965 2 0 Median 0.78822 0.66385 3.4566 2 0 Median 538380000 309430000 228950000 432540000 249190000 183350000 105840000 60239000 45606000 15414 1129 15832 40934;40935;40936;40937 64246;64247;64248;64249;64250;64251;64252;64253 64248 8 YTEGVQSLNWTK SLDPIKEWLNSCDLKYTEGVQSLNWTKIMK DLKYTEGVQSLNWTKIMKTIVDDPEGFFEQ K Y T T K I 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 1 2 1 1 1 0 0 12 0 1424.6936 Q9Y5B9 Q9Y5B9 893 904 SUPT16H FACT complex subunit SPT16 yes yes 2 7.9735E-23 157.78 2 2 0.75182 0.73594 6.4982 4 Median 0.60972 0.69824 0.73265 2 0 Median 0.92974 0.78036 1.5823 2 0 Median 464480000 279290000 185190000 364060000 227670000 136390000 100430000 51619000 48806000 15415 2148 15833 40938;40939;40940;40941 64254;64255;64256;64257;64258;64259;64260;64261 64257 8 YTEMDYAR FTNRTKEEVNEWFTKYTEMDYARAGNKAAF VNEWFTKYTEMDYARAGNKAAFTVSLDPGP K Y T A R A 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 2 0 0 0 8 0 1047.4331 A0A024RAE1;Q9UKD2 A0A024RAE1 119 126 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 0.0031117 87.323 1 1.3658 1.3632 NaN 1 Median 1.3658 1.3632 NaN 1 0 Median NaN NaN NaN 0 0 Median 16678000 6775200 9903200 16678000 6775200 9903200 0 0 0 15416 302 15834 40942 64262 64262 218 1 YTEVFPPTPVRPAFSFYETLR PLTVSAVQGAHPVLRYTEVFPPTPVRPAFS PTPVRPAFSFYETLRERSSLLPRLDKPCPA R Y T L R E 1 2 0 0 0 0 2 0 0 0 1 0 0 3 4 1 3 0 2 2 0 0 21 1 2516.274 Q9H6R4;B4DF80;A0A0A0MRW6;B3KPN5 Q9H6R4 695 715 NOL6 Nucleolar protein 6 yes no 3 2.0788E-07 59.281 2 2 1.2606 1.2034 8.9097 4 Median 1.0614 1.1831 0.7256 2 0 Median 1.5004 1.317 11.08 2 0 Median 122730000 56118000 66614000 79577000 40236000 39341000 43155000 15883000 27273000 15417 2038 15835 40943;40944;40945;40946 64263;64264;64265;64266;64267;64268;64269;64270;64271 64268 9 YTFNEDEGELPEWFVQEEK SKKAKRDLIDNSFNRYTFNEDEGELPEWFV EDEGELPEWFVQEEKQHRIRQLPVGKKEVE R Y T E K Q 0 0 1 1 0 1 6 1 0 0 1 1 0 2 1 0 1 1 1 1 0 0 19 0 2388.0434 Q8IY81;B4DKU3 Q8IY81 692 710 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 5.1967E-12 105.19 2 2 0.98761 0.90379 6.6164 4 Median 0.82989 0.85246 4.0745 2 0 Median 1.162 0.94642 2.3243 2 0 Median 112150000 52393000 59752000 61199000 29713000 31486000 50946000 22680000 28267000 15418 1898 15836 40947;40948;40949;40950 64272;64273;64274;64275;64276;64277;64278;64279 64276 8 YTHAANTVVYSSNK KRTLYSKKYGVDLIRYTHAANTVVYSSNKI RYTHAANTVVYSSNKIDDTIRYLSLHDNKY R Y T N K I 2 0 2 0 0 0 0 0 1 0 0 1 0 0 0 2 2 0 2 2 0 0 14 0 1553.7474 A0A024R333;Q6UXN9 A0A024R333 71 84 TMEM113;WDR82 WD repeat-containing protein 82 yes no 2 8.9628E-05 87.001 2 1.687 1.7024 2.1392 2 Median 1.687 1.7024 2.1392 2 0 Median NaN NaN NaN 0 0 Median 10874000 4115600 6758800 10874000 4115600 6758800 0 0 0 15419 128 15837 40951;40952 64280;64281;64282 64281 3 YTIENPR MWSEGNGSHTIRDLKYTIENPRHFVDSHHQ SHTIRDLKYTIENPRHFVDSHHQKPVNAII K Y T P R H 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 7 0 891.44503 A0A140VK49;Q7KZF4;B2R5U1;B3KU67;Q59FF0;B4E299;I6TRR8 A0A140VK49 178 184 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.026752 86.872 2 1.5014 1.6137 NaN 1 Median 1.5014 1.6137 NaN 1 0 Median NaN NaN NaN 0 0 Median 111370000 20022000 91344000 111370000 20022000 91344000 0 0 0 15420 618 15838 40953;40954 64283;64284;64285 64284 3 YTIIPLNK VTGKKLLERGELKRRYTIIPLNKISARCIA RGELKRRYTIIPLNKISARCIAPETLRVAQ R Y T N K I 0 0 1 0 0 0 0 0 0 2 1 1 0 0 1 0 1 0 1 0 0 0 8 0 960.56442 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 573 580 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0077064 81.784 2 2 1.2202 1.1985 21.249 4 Median 0.84923 0.99643 0.71033 2 0 Median 1.7491 1.4396 0.52072 2 0 Median 718950000 366250000 352700000 650650000 341390000 309260000 68296000 24853000 43444000 15421 69 15839 40955;40956;40957;40958 64286;64287;64288;64289;64290 64290 5 YTISQEAYDQR GARLGEYEDVSRVEKYTISQEAYDQRQDTV RVEKYTISQEAYDQRQDTVRSFLKRSKLGR K Y T Q R Q 1 1 0 1 0 2 1 0 0 1 0 0 0 0 0 1 1 0 2 0 0 0 11 0 1372.6259 K7EP07;K7EK42;Q99426 K7EP07 56 66 TBCB Tubulin-folding cofactor B yes no 2 3.8573E-06 96.143 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15422 1342 15840 40959 64291 64291 1 YTLLLGQDENSVIK YFAYVQMFNSRILTKYTLLLGQDENSVIKS KYTLLLGQDENSVIKSFTASVDRKFISLMS K Y T I K S 0 0 1 1 0 1 1 1 0 1 3 1 0 0 0 1 1 0 1 1 0 0 14 0 1591.8457 Q9H8H0;J3QR28 Q9H8H0 192 205 NOL11 Nucleolar protein 11 yes no 2 2.2539E-05 112.13 2 2 1.326 1.2671 8.4157 4 Median 1.2104 1.3676 2.8174 2 0 Median 1.4315 1.1861 1.3738 2 0 Median 350970000 167550000 183420000 269840000 133990000 135850000 81126000 33557000 47569000 15423 2042 15841 40960;40961;40962;40963 64292;64293;64294;64295;64296;64297;64298;64299;64300;64301 64299 10 YTPSQQGVAFNSGAK PVRAADKLAPAQYIRYTPSQQGVAFNSGAK YTPSQQGVAFNSGAKQRVIRMVEMQKDPME R Y T A K Q 2 0 1 0 0 2 0 2 0 0 0 1 0 1 1 2 1 0 1 1 0 0 15 0 1553.7474 B7Z9X2;B4DY36;A0A024R6E3;Q6I9S2;Q13573;G3V4X8;G3V3A4;B4DEG7;Q0D2M5;Q6P151 B7Z9X2 104 118 SNW1 SNW domain-containing protein 1 yes no 2 5.0325E-07 102.4 2 1 1.66 1.6549 NaN 1 Median 1.66 1.6549 NaN 1 0 Median NaN NaN NaN 0 0 Median 6425300 2230600 4194700 6425300 2230600 4194700 0 0 0 15424 203 15842 40964;40965;40966 64302;64303;64304;64305 64303 4 YTPVQQGPVGVNVTYGGDPIPK DVDIIDHHDNTYTVKYTPVQQGPVGVNVTY PVGVNVTYGGDPIPKSPFSVAVSPSLDLSK K Y T P K S 0 0 1 1 0 2 0 4 0 1 0 1 0 0 4 0 2 0 2 4 0 0 22 0 2285.1692 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 937 958 FLNA Filamin-A yes no 2 3.7033E-08 71.08 2 2 3.2614 2.5959 28.104 3 Median 1.6411 1.7041 NaN 1 0 Median 3.3983 2.7457 7.9336 2 0 Median 43446000 14356000 29090000 24676000 10425000 14251000 18770000 3931100 14839000 15425 1504 15843 40967;40968;40969;40970 64306;64307;64308;64309;64310 64307 5 YTQGGLENLELSR NPHNHLYCQQYAEVKYTQGGLENLELSRKY VKYTQGGLENLELSRKYFAQALKLNNRNMR K Y T S R K 0 1 1 0 0 1 2 2 0 0 3 0 0 0 0 1 1 0 1 0 0 0 13 0 1478.7365 Q53HG5;A8K4K9;Q15006 Q53HG5 200 212 EMC2 ER membrane protein complex subunit 2 yes no 2 0.0013831 73.951 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15426 736 15844 40971 64311 64311 1 YTQPNICR LDCQTVIRDVEQQFKYTQPNICRNPVCANR DVEQQFKYTQPNICRNPVCANRRRFLLDTN K Y T C R N 0 1 1 0 1 1 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 8 0 1050.4917 Q14566;Q4ZG57 Q14566 174 181 MCM6 DNA replication licensing factor MCM6 yes no 2 0.032434 50.632 1 0.92842 0.80561 NaN 1 Median NaN NaN NaN 0 0 Median 0.92842 0.80561 NaN 1 0 Median 2141500 1098500 1043000 0 0 0 2141500 1098500 1043000 15427 1734 15845 40972 64312 64312 1 YTQQIIQGIQQLVK ILQQDFCHAIKVGVKYTQQIIQGIQQLVKE KYTQQIIQGIQQLVKETGVTKRTPQKLFTP K Y T V K E 0 0 0 0 0 5 0 1 0 3 1 1 0 0 0 0 1 0 1 1 0 0 14 0 1658.9356 Q8TCS8 Q8TCS8 251 264 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.03177 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 553120 0 553120 0 0 0 553120 0 553120 15428 1931 15846 40973 64313 64313 1 YTQSNSVCYAK ESALRDLIVATIAVKYTQSNSVCYAKNGQV IAVKYTQSNSVCYAKNGQVIGIGAGQQSRI K Y T A K N 1 0 1 0 1 1 0 0 0 0 0 1 0 0 0 2 1 0 2 1 0 0 11 0 1319.5816 V9HWH7;B2R7P8;P31939;B4DP06;H7C1S2 V9HWH7 427 437 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.00090132 71.614 2 3.7935 3.9806 17.972 2 Median 3.7935 3.9806 17.972 2 0 Median NaN NaN NaN 0 0 Median 8080100 2461400 5618700 8080100 2461400 5618700 0 0 0 15429 852 15847 40974;40975 64314;64315 64315 2 YTQVGPDHNR LNQYFQKEKIQGEYKYTQVGPDHNRSFIAE QGEYKYTQVGPDHNRSFIAEMTIYIKQLGR K Y T N R S 0 1 1 1 0 1 0 1 1 0 0 0 0 0 1 0 1 0 1 1 0 0 10 0 1185.5527 Q08211;Q58F26;Q6PJK6 Q08211 200 209 DHX9 ATP-dependent RNA helicase A yes no 2 1.0498E-06 111.95 1 1.2602 1.2866 NaN 1 Median 1.2602 1.2866 NaN 1 0 Median NaN NaN NaN 0 0 Median 30949000 14171000 16778000 30949000 14171000 16778000 0 0 0 15430 1691 15848 40976 64316 64316 1 YTRPTPVQK VEMGEIIMGNIELTRYTRPTPVQKHAIPII NIELTRYTRPTPVQKHAIPIIKEKRDLMAC R Y T Q K H 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 2 0 1 1 0 0 9 1 1088.5978 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;A0A024R9A4;O15523;B4DLU5;B4E010;C9J8G5;C9J081;B4E3C4 A0A0D9SFB3 200 208 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 4.6303E-11 156.46 4 1 1.4603 1.7178 26.362 5 Median 1.5287 1.7951 6.1511 4 0 Median 1.2022 1.0092 NaN 1 0 Median 220900000 86732000 134170000 215950000 84460000 131490000 4948700 2272600 2676100 15431 522 15849 40977;40978;40979;40980;40981 64317;64318;64319;64320;64321;64322;64323 64321 7 YTTPEDATPEPGEDPR AGKSKIEDYFPEFARYTTPEDATPEPGEDP TTPEDATPEPGEDPRVTRAKYFIRDEFLRI R Y T P R V 1 1 0 2 0 0 3 1 0 0 0 0 0 0 4 0 3 0 1 0 0 0 16 0 1773.7693 Q5FWY2;A0A0S2Z3S5;A0A0S2Z3H8;P63092;Q5JWF2;B0AZR9;Q14455;A0A0A0MR13;O60726 Q5FWY2 304 319 GNAS;GSA Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 2 0.0021592 42.095 2 1 1.7292 1.7835 26.443 3 Plateau 1.6911 1.7229 10.159 2 0 Median 1.2784 1.1087 NaN 1 0 Median 41006000 15562000 25444000 38542000 14436000 24106000 2463900 1125700 1338200 15432 549 15850 40982;40983;40984 64324;64325;64326;64327;64328 64326 5 YTVENGYSTSAK GRQMIEKTKQLVESKYTVENGYSTSAKVVY ESKYTVENGYSTSAKVVYGDTDSVMCRFGV K Y T A K V 1 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 2 0 2 1 0 0 12 0 1318.6041 M0QZR8;Q59FA0;A0A024R4F4;M0R2B7;P28340;Q308M6 M0QZR8 739 750 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.031007 47.187 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2649200 2649200 0 2649200 2649200 0 0 0 0 15433 155 15851 40985 64329 64329 1 YTVPGYR SAILSQADARQVVLKYTVPGYRNSLEFFTM DARQVVLKYTVPGYRNSLEFFTMLAQRRGM K Y T Y R N 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 2 1 0 0 7 0 854.42865 A0A024R2Z6;Q9BVP2 A0A024R2Z6 341 347 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.031504 67.035 1 1 0.99406 0.94375 2.2639 2 Median 0.84857 0.92877 NaN 1 0 Median 1.1645 0.95898 NaN 1 0 Median 61226000 32016000 29210000 52794000 27940000 24853000 8432400 4075100 4357300 15434 125 15852 40986;40987 64330;64331 64330 2 YTVQDESHSEWVSCVR RDKTIKLWNTLGVCKYTVQDESHSEWVSCV TVQDESHSEWVSCVRFSPNSSNPIIVSCGW K Y T V R F 0 1 0 1 1 1 2 0 1 0 0 0 0 0 0 3 1 1 1 3 0 0 16 0 1980.8636 E9KL35;P63244;J3KPE3;H0Y8W2;H0YAF8;D6RHH4;D6R9Z1;H0YAM7;D6R9L0;D6RFX4;B4DVD2;D6RBD0;D6RFZ9 E9KL35 140 155 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3 0.0055909 29.618 2 1.7999 1.5508 0.85599 2 Median NaN NaN NaN 0 0 Median 1.7999 1.5508 0.85599 2 0 Median 8225900 3259100 4966900 0 0 0 8225900 3259100 4966900 15435 1227 15853 40988;40989 64332;64333;64334 64332 3 YVALVQEK VAASLATTLTKIALRYVALVQEKKKQNSFV LTKIALRYVALVQEKKKQNSFVAEAMLLMA R Y V E K K 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 8 0 948.52803 P53618 P53618 568 575 COPB1 Coatomer subunit beta yes yes 2 0.015121 61.962 1 1.1789 1.157 NaN 1 Median 1.1789 1.157 NaN 1 0 Median NaN NaN NaN 0 0 Median 8792300 4308400 4483900 8792300 4308400 4483900 0 0 0 15436 1606 15854 40990 64335 64335 1 YVANLFPYK PLNPIKQDVKKGKLRYVANLFPYKGYIWNY KKGKLRYVANLFPYKGYIWNYGAIPQTWED R Y V Y K G 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 2 1 0 0 9 0 1113.5859 V9HWB5;Q15181;Q5SQT6 V9HWB5 80 88 HEL-S-66p;PPA1 Inorganic pyrophosphatase yes no 2 0.015184 62.659 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11538000 0 11538000 11538000 0 11538000 0 0 0 15437 1755 15855 40991;40992 64336;64337 64336 2 YVASAVFGVIGSQK ______________________________ RYVASAVFGVIGSQKGNIVFVTLRGEKGRY R Y V Q K G 2 0 0 0 0 1 0 2 0 1 0 1 0 1 0 2 0 0 1 3 0 0 14 0 1424.7664 Q5TDG3;Q9UNX4;Q6PDA5 Q5TDG3 10 23 WDR3 WD repeat-containing protein 3 yes no 2 3.3952E-09 112.94 2 2 1.1024 1.0614 3.687 4 Median 0.92695 1.0389 2.4094 2 0 Median 1.3291 1.0912 3.2986 2 0 Median 217220000 108280000 108940000 152570000 81468000 71104000 64645000 26812000 37833000 15438 1827 15856 40993;40994;40995;40996 64338;64339;64340;64341;64342;64343;64344;64345 64341 8 YVASYLLAALGGNSSPSAK ______________________________ YLLAALGGNSSPSAKDIKKILDSVGIEADD R Y V A K D 4 0 1 0 0 0 0 2 0 0 3 1 0 0 1 4 0 0 2 1 0 0 19 0 1867.968 A0A024RCA7;P05387 A0A024RCA7 3 21 RPLP2 60S acidic ribosomal protein P2 yes no 2 3.617E-51 170.79 2 2 0.74464 0.89482 31.796 4 Linear 0.71938 0.82475 2.9614 2 0 Median 0.58098 0.47759 6.2871 2 0 Median 448040000 256990000 191040000 380560000 217810000 162750000 67477000 39182000 28295000 15439 356 15857 40997;40998;40999;41000 64346;64347;64348;64349;64350;64351;64352 64347 7 YVATLGVEVHPLVFHTNR TTFVKRHLTGEFEKKYVATLGVEVHPLVFH TLGVEVHPLVFHTNRGPIKFNVWDTAGQEK K Y V N R G 1 1 1 0 0 0 1 1 2 0 2 0 0 1 1 0 2 0 1 4 0 0 18 0 2051.0952 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6;Q96QB7;Q0EFC9 B5MDF5 39 56 RAN;TC4 GTP-binding nuclear protein Ran yes no 3;4 9.7248E-05 46.621 3 1.0543 0.86362 10.997 3 Median NaN NaN NaN 0 0 Median 1.0543 0.86362 10.997 3 0 Median 44724000 20339000 24385000 0 0 0 44724000 20339000 24385000 15440 1082 15858 41001;41002;41003 64353;64354;64355;64356;64357 64353 5 YVAVMPPHIGDQPLTGAYTVTLDGR DHIRMHKVLRESGLKYVAVMPPHIGDQPLT DQPLTGAYTVTLDGRGPSRVISKHDLGHFM K Y V G R G 2 1 0 2 0 1 0 3 1 1 2 0 1 0 3 0 3 0 2 3 0 0 25 0 2670.3476 V9HWI1;P30043 V9HWI1 146 170 HEL-S-10;BLVRB Flavin reductase (NADPH) yes no 3 2.2955E-12 67.217 2 3.3451 3.4604 17.752 2 Median 3.3451 3.4604 17.752 2 0 Median NaN NaN NaN 0 0 Median 54237000 10274000 43964000 54237000 10274000 43964000 0 0 0 15441 1528 15859 41004;41005 64358;64359 64359 1296 2 YVAVPACEHVFIWDLR KGNIVFVTLRGEKGRYVAVPACEHVFIWDL VAVPACEHVFIWDLRKGEKILILQGLKQEV R Y V L R K 2 1 0 1 1 0 1 0 1 1 1 0 0 1 1 0 0 1 1 3 0 0 16 0 1973.9822 Q5TDG3;Q9UNX4 Q5TDG3 38 53 WDR3 WD repeat-containing protein 3 yes no 3 6.4002E-05 59.513 2 1 0.69666 0.72194 4.2568 3 Median 0.68831 0.7155 1.2676 2 0 Median 0.94066 0.76898 NaN 1 0 Median 56346000 28644000 27702000 42523000 21910000 20613000 13823000 6734500 7088500 15442 1827 15860 41006;41007;41008 64360;64361;64362;64363;64364;64365 64361 6 YVDIAIPCNNK NLPTIALCNTDSPLRYVDIAIPCNNKGAHS SPLRYVDIAIPCNNKGAHSVGLMWWMLARE R Y V N K G 1 0 2 1 1 0 0 0 0 2 0 1 0 0 1 0 0 0 1 1 0 0 11 0 1305.6387 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5 C9J9K3 156 166 RPSA;LOC388524 40S ribosomal protein SA yes no 2 2.8403E-05 101.64 1 1 1.54 1.7205 NaN 1 Median 1.54 1.7205 NaN 1 0 Median NaN NaN NaN 0 0 Median 92900000 36041000 56858000 88904000 36041000 52863000 3995500 0 3995500 15443 119 15861 41009;41010 64366;64367;64368;64369 64366 4 YVDIGVLASDLQR KQRVIQYLTSNKCGKYVDIGVLASDLQRVY GKYVDIGVLASDLQRVYSIDYGRRKRNAFR K Y V Q R V 1 1 0 2 0 1 0 1 0 1 2 0 0 0 0 1 0 0 1 2 0 0 13 0 1447.7671 B4DLM8;O15381;A0JLP9;E9PH71;F8WF01;B4DF43;E9PGD8;E7EWK7 B4DLM8 29 41 NVL Nuclear valosin-containing protein-like yes no 2 1.3219E-05 96.015 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9943000 0 9943000 9943000 0 9943000 0 0 0 15444 997 15862 41011 64370 64370 1 YVENPSQVLNCER KPLHLLDCIHVLLIRYVENPSQVLNCERRR IRYVENPSQVLNCERRRFTNLCLDAVCGYL R Y V E R R 0 1 2 0 1 1 2 0 0 0 1 0 0 0 1 1 0 0 1 2 0 0 13 0 1606.741 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1296 1308 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.00012053 77.062 2 1 1.2143 1.2514 15.729 3 Plateau 1.2143 1.2358 4.7486 2 0 Median 1.0907 0.947 NaN 1 0 Median 25988000 10866000 15123000 23791000 9866800 13925000 2196900 998810 1198100 15445 39 15863 41012;41013;41014 64371;64372;64373;64374;64375 64372 5 YVFTDISYSIPHR ______________________________ XKYVFTDISYSIPHRERFIVVREPSGTLRK K Y V H R E 0 1 0 1 0 0 0 0 1 2 0 0 0 1 1 2 1 0 2 1 0 0 13 0 1596.7936 H7C5L9;G5E9W7;G5E9V5;P82650;Q8NBL6;H7C5F2;H7C5H3;A8K9Y7 H7C5L9 3 15 MRPS22 28S ribosomal protein S22, mitochondrial yes no 3 0.010745 37.613 2 1.1431 1.1825 NaN 1 Median 1.1431 1.1825 NaN 1 0 Median NaN NaN NaN 0 0 Median 18696000 3716300 14980000 18696000 3716300 14980000 0 0 0 15446 1277 15864 41015;41016 64376;64377 64376 2 YVHADAPTNK QLDSVRVWLGKHYKKYVHADAPTNKTLAGL KHYKKYVHADAPTNKTLAGLVVQLLQFQED K Y V N K T 2 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 1 0 1 1 0 0 10 0 1114.5407 Q58EY4;Q92922;Q05CR1;Q05BW5;F8WE13 Q58EY4 66 75 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 0.00085026 80.219 1 0.72973 0.73511 NaN 1 Median 0.72973 0.73511 NaN 1 0 Median NaN NaN NaN 0 0 Median 7185300 4147300 3037900 7185300 4147300 3037900 0 0 0 15447 1798 15865 41017 64378;64379 64379 2 YVHLFPK GELIRMPKMGKTIHKYVHLFPKLELSVHLQ KMGKTIHKYVHLFPKLELSVHLQPITRSTL K Y V P K L 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 1 1 0 0 7 0 902.50142 O75643;A4FU77 O75643 1177 1183 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.019831 94.669 1 1.1883 1.3391 NaN 1 Median 1.1883 1.3391 NaN 1 0 Median NaN NaN NaN 0 0 Median 60141000 29723000 30418000 60141000 29723000 30418000 0 0 0 15448 1411 15866 41018 64380 64380 1 YVIYIER KGQQIGKVVQVYRKKYVIYIERVQREKANG VVQVYRKKYVIYIERVQREKANGTTVHVGI K Y V E R V 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 2 1 0 0 7 0 954.51747 Q6IBH6;P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KTJ8;J3KS10;E5RIT6;Q9UNX3 Q6IBH6 78 84 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 no no 2 0.026805 84.244 2 2 0.66775 0.67528 37.704 4 Median 0.79629 0.93893 2.7172 2 0 Median 0.56388 0.48906 1.7326 2 0 Median 1528700000 874530000 654170000 1394400000 787630000 606750000 134330000 86908000 47424000 15449 1629;1214 15867 41019;41020;41021;41022 64381;64382;64383;64384;64385;64386 64381 6 YVLINWVGEDVPDAR YGFCSVKDSQAALPKYVLINWVGEDVPDAR YVLINWVGEDVPDARKCACASHVAKVAEFF K Y V A R K 1 1 1 2 0 0 1 1 0 1 1 0 0 0 1 0 0 1 1 3 0 0 15 0 1744.8784 Q16643;D6R9W4;D6RFI1;D6RCR4 Q16643 80 94 DBN1 Drebrin yes no 2 1.192E-07 97.214 2 0.92463 0.92599 22.474 2 Median 0.92463 0.92599 22.474 2 0 Median NaN NaN NaN 0 0 Median 18803000 9241400 9562000 18803000 9241400 9562000 0 0 0 15450 1773 15868 41023;41024 64387;64388 64388 1 YVLLNPK ASKSFSYQLEALKSKYVLLNPKTEGASRHK QLEALKSKYVLLNPKTEGASRHKSGDDPPA K Y V P K T 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 7 0 845.50109 A0A024R8V6;Q9P275;A0A075B784;E9PEW0;Q9H9C5;K7ELR5;Q8IXW9;K7EQS0;K7EPT1;K7ERC1;K7ELT3 A0A024R8V6 60 66 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.026837 80.377 1 1.2075 1.2296 NaN 1 Median 1.2075 1.2296 NaN 1 0 Median NaN NaN NaN 0 0 Median 14172000 5705900 8466000 14172000 5705900 8466000 0 0 0 15451 260 15869 41025 64389 64389 1 YVLVAGITPTPLGEGK RLSVLERLKDQADGKYVLVAGITPTPLGEG VLVAGITPTPLGEGKSTVTIGLVQALTAHL K Y V G K S 1 0 0 0 0 0 1 3 0 1 2 1 0 0 2 0 2 0 1 2 0 0 16 0 1613.9029 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 349 364 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.00010548 99.215 2 1.8652 1.9284 1.3572 2 Median 1.8652 1.9284 1.3572 2 0 Median NaN NaN NaN 0 0 Median 26291000 9220000 17071000 26291000 9220000 17071000 0 0 0 15452 418 15870 41026;41027 64390;64391;64392 64391 3 YVMGNNPADLLAVDSR VATDLDTGRPSTTVRYVMGNNPADLLAVDS VMGNNPADLLAVDSRTGKLTLKNKVTKEQY R Y V S R T 2 1 2 2 0 0 0 1 0 0 2 0 1 0 1 1 0 0 1 2 0 0 16 0 1733.8407 Q02413 Q02413 423 438 DSG1 Desmoglein-1 yes yes 2 0.00042176 64.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15453 1678 15871 41028 64393 64393 1480 1 YVMTTTTLER TENMPIKINLIAPPRYVMTTTTLERTEGLS IAPPRYVMTTTTLERTEGLSVLSQAMAVIK R Y V E R T 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 4 0 1 1 0 0 10 0 1213.6013 Q53XC0;P05198;H0YJS4;G3V4T5 Q53XC0 235 244 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 3.2061E-05 82.749 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2493900 0 2493900 2493900 0 2493900 0 0 0 15454 1445 15872 41029;41030 64394;64395 64395 1152 2 YVNLEEADNQTLDSYR VFQVLNEKKQIYAIKYVNLEEADNQTLDSY VNLEEADNQTLDSYRNEIAYLNKLQQHSDK K Y V Y R N 1 1 2 2 0 1 2 0 0 0 2 0 0 0 0 1 1 0 2 1 0 0 16 0 1928.8752 P33981 P33981 554 569 TTK Dual specificity protein kinase TTK yes yes 2 0.00066179 75.479 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15455 1539 15873 41031;41032 64396;64397 64396 2 YVPGSSGSSNTLPTADPFTGAGR LGNPSFSDPFTGGGRYVPGSSGSSNTLPTA SNTLPTADPFTGAGRYVPGSASMGTTMAGV R Y V G R Y 2 1 1 1 0 0 0 4 0 0 1 0 0 1 3 4 3 0 1 1 0 0 23 0 2238.0553 Q9Y263;E5RIM3;H0YBW4 Q9Y263 477 499 PLAA Phospholipase A-2-activating protein yes no 2 0.0099465 30.961 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4033200 0 4033200 4033200 0 4033200 0 0 0 15456 2123 15874 41033 64398 64398 1 YVQELAAVR GRQFLEVELDQAREKYVQELAAVRADAETR DQAREKYVQELAAVRADAETRLAEVQREAQ K Y V V R A 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 9 0 1047.5713 A0A024R5M9;A0A087WY61;Q59HB8;A0A024R5G4;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1476 1484 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0034102 78.516 2 1.7121 1.4211 NaN 1 Median NaN NaN NaN 0 0 Median 1.7121 1.4211 NaN 1 0 Median 10399000 2443400 7955400 0 0 0 10399000 2443400 7955400 15457 186;1747 15875 41034;41035 64399;64400;64401 64399 3 YVSINSTLESCELR IRSSRKVVEHSNPAKYVSINSTLESCELRE KYVSINSTLESCELREIEESLGLEKCSADS K Y V L R E 0 1 1 0 1 0 2 0 0 1 2 0 0 0 0 3 1 0 1 1 0 0 14 0 1669.7981 Q5VWN6 Q5VWN6 823 836 FAM208B Protein FAM208B yes yes 2 0.02114 44.543 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1807400 0 1807400 1807400 0 1807400 0 0 0 15458 1833 15876 41036 64402 64402 1 YVSQYYPK RLCEPKEASYSLIRKYVSQYYPKLRVDIRP SYSLIRKYVSQYYPKLRVDIRPQLLKNALQ K Y V P K L 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 3 1 0 0 8 0 1046.5073 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 284 291 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0022675 101.33 2 2 0.87871 0.84798 7.0945 4 Median 0.78347 0.90711 2.9604 2 0 Median 0.95444 0.80531 0.72826 2 0 Median 607940000 328820000 279120000 499080000 274150000 224920000 108860000 54671000 54192000 15459 1817 15877 41037;41038;41039;41040 64403;64404;64405;64406;64407;64408 64404 6 YVTAFNGELEDYMSDR LYGEFPGDERRKLIRYVTAFNGELEDYMSD VTAFNGELEDYMSDRVQFVITAQEWDPSFE R Y V D R V 1 1 1 2 0 0 2 1 0 0 1 0 1 1 0 1 1 0 2 1 0 0 16 0 1908.82 F5H8D7;A0A024R0S8;Q59HH7;B4DTD3;B2RCY5 F5H8D7 534 549 XRCC1 yes no 2 0.00021533 49.448 2 1.3047 1.3671 NaN 1 Median 1.3047 1.3671 NaN 1 0 Median NaN NaN NaN 0 0 Median 18914000 11948000 6965900 18914000 11948000 6965900 0 0 0 15460 58 15878 41041;41042 64409;64410 64409 29 2 YVTDIQPSEQNESNINK NLCDYGTHNILDLKKYVTDIQPSEQNESNI TDIQPSEQNESNINKLRKKVNRKTEIISGM K Y V N K L 0 0 3 1 0 2 2 0 0 2 0 1 0 0 1 2 1 0 1 1 0 0 17 0 1977.928 Q562F6;B7Z7S9 Q562F6 595 611 SGOL2 Shugoshin-like 2 yes no 2 3.3407E-18 133.05 2 0.96108 0.98585 18.612 2 Median 0.96108 0.98585 18.612 2 0 Median NaN NaN NaN 0 0 Median 43184000 20554000 22631000 43184000 20554000 22631000 0 0 0 15461 1795 15879 41043;41044 64411;64412;64413;64414;64415;64416 64412 6 YVVVTGITPTPLGEGK LLSALERLKHRPDGKYVVVTGITPTPLGEG VVVTGITPTPLGEGKSTTTIGLVQALGAHL K Y V G K S 0 0 0 0 0 0 1 3 0 1 1 1 0 0 2 0 3 0 1 3 0 0 16 0 1629.8978 A0A024R652;P11586;F5H2F4;B7Z809 A0A024R652 371 386 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 1.2655E-06 96.103 2 2 1.4124 1.2669 40.432 4 Median 1.773 1.8142 13.249 2 0 Median 1.1422 0.91661 8.2353 2 0 Median 53003000 21529000 31473000 42879000 16566000 26313000 10123000 4963100 5160300 15462 196 15880 41045;41046;41047;41048 64417;64418;64419;64420;64421;64422;64423 64419 7 YVYNYEAESSSGVPGTADSR PSCPKDAVRFKHLRKYVYNYEAESSSGVPG EAESSSGVPGTADSRSATKINCKVELEVPQ K Y V S R S 2 1 1 1 0 0 2 2 0 0 0 0 0 0 1 4 1 0 3 2 0 0 20 0 2150.9393 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 49 68 yes yes 2 1.9251E-05 65.219 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6349300 6349300 0 6349300 6349300 0 0 0 0 + 15463 1146 15881 41049;41050 64424;64425 64425 2 YVYSVLDDVIPEEILGK ICMELMSTSFDKFYKYVYSVLDDVIPEEIL YSVLDDVIPEEILGKITLATVKALNHLKEN K Y V G K I 0 0 0 2 0 0 2 1 0 2 2 1 0 0 1 1 0 0 2 3 0 0 17 0 1951.019 B4DH44;P45985;B7ZA62;B7Z9Y5 B4DH44 168 184 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 yes no 2 0.010016 43.084 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3211600 0 3211600 3211600 0 3211600 0 0 0 15464 973 15882 41051 64426;64427 64427 2 YWDLMNLSEK LELEMGDDYILDLQKYWDLMNLSEKHDKIP LDLQKYWDLMNLSEKHDKIPEIWEGHNIAD K Y W E K H 0 0 1 1 0 0 1 0 0 0 2 1 1 0 0 1 0 1 1 0 0 0 10 0 1297.6013 Q8N4P8;Q53GS0;D2CFK9;Q9BZE4;B4DHR2 Q8N4P8 414 423 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0018461 62.823 2 1 1.499 1.5693 NaN 1 Median 1.499 1.5693 NaN 1 0 Median NaN NaN NaN 0 0 Median 10534000 3893000 6640900 10534000 3893000 6640900 0 0 0 15465 1183 15883 41052;41053;41054 64428;64429;64430;64431 64429 902 4 YWEEETVPTTAGASPGPPR PKKDKLQTKRKKPRRYWEEETVPTTAGASP ETVPTTAGASPGPPRNKKNRELRPQRPKNA R Y W P R N 2 1 0 0 0 0 3 2 0 0 0 0 0 0 4 1 3 1 1 1 0 0 19 0 2043.9538 B0UZZ8;O15213;A8K9A1;A8K806 B0UZZ8 28 46 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 6.1262E-08 88.021 2 1.0053 1.0408 2.9772 2 Median 1.0053 1.0408 2.9772 2 0 Median NaN NaN NaN 0 0 Median 41690000 22524000 19166000 41690000 22524000 19166000 0 0 0 15466 809 15884 41055;41056 64432;64433;64434;64435 64435 4 YWIDIQLR LADSKDVMDSTTTQKYWIDIQLRWGDYDSH DSTTTQKYWIDIQLRWGDYDSHDIERYARA K Y W L R W 0 1 0 1 0 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 0 8 0 1105.592 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1660 1667 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.026448 54.549 1 1.0573 1.0731 NaN 1 Median 1.0573 1.0731 NaN 1 0 Median NaN NaN NaN 0 0 Median 5392300 2282900 3109400 5392300 2282900 3109400 0 0 0 15467 1854 15885 41057 64436 64436 1 YWLCAATGPSIK DGGDIINALCFSPNRYWLCAATGPSIKIWD PNRYWLCAATGPSIKIWDLEGKIIVDELKQ R Y W I K I 2 0 0 0 1 0 0 1 0 1 1 1 0 0 1 1 1 1 1 0 0 0 12 0 1365.6751 E9KL35;P63244;J3KPE3;D6RAC2;H0Y8W2;H0YAF8;H0YAM7;D6REE5;H0Y8R5;D6RF23;H0Y9P0 E9KL35 246 257 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.00046331 88.681 1 3 1.7439 1.3824 NaN 1 Median NaN NaN NaN 0 0 Median 1.7439 1.3824 NaN 1 0 Median 20465000 3639300 16826000 13932000 0 13932000 6533100 3639300 2893700 15468 1227 15886 41058;41059;41060;41061 64437;64438;64439;64440;64441 64437 5 YWLFSDEVPGLFIEK VMRRTPIGTDRNHNRYWLFSDEVPGLFIEK YWLFSDEVPGLFIEKGWVHDSIDYRFNHHC R Y W E K G 0 0 0 1 0 0 2 1 0 1 2 1 0 2 1 1 0 1 1 1 0 0 15 0 1841.924 Q9UIG0 Q9UIG0 912 926 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.011921 45.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15469 2103 15887 41062 64442 64442 1 YWTLTATGGVQSTASSK DRDTKKCAFRTHTGKYWTLTATGGVQSTAS TLTATGGVQSTASSKNASCYFDIEWRDRRI K Y W S K N 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 3 4 1 1 1 0 0 17 0 1756.8632 B3KTA3;Q16658;C9JPH9;C9JFC0;A0A0A0MSB2;B3KTM9 B3KTA3 293 309 FSCN1 Fascin yes no 2 1.2932E-06 81.494 4 1 1.6883 1.4149 NaN 1 Median NaN NaN NaN 0 0 Median 1.6883 1.4149 NaN 1 0 Median 15679000 785550 14894000 13815000 0 13815000 1864800 785550 1079300 15470 942 15888 41063;41064;41065;41066;41067 64443;64444;64445;64446;64447;64448;64449 64444 7 YYAVNYPLR PGTGDLRDIGAGKGKYYAVNYPLRDGIDDE GAGKGKYYAVNYPLRDGIDDESYEAIFKPV K Y Y L R D 1 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 3 1 0 0 9 0 1157.5869 Q6IT96;Q13547;B5BU61;B4DRG0;Q5TEE2 Q6IT96 221 229 HDAC1 Histone deacetylase;Histone deacetylase 1 yes no 2 0.00023642 105.2 2 2 1.0386 0.98893 28.231 4 Median 0.76423 0.82593 4.9644 2 0 Median 1.5453 1.298 17.957 2 0 Median 86004000 45941000 40063000 75205000 41955000 33250000 10799000 3986300 6812600 15471 1715 15889 41068;41069;41070;41071 64450;64451;64452;64453;64454;64455;64456;64457;64458;64459;64460 64452 11 YYEAADTVTQFDNVR EKMAVRKKDGGPNVKYYEAADTVTQFDNVR YYEAADTVTQFDNVRLWLGKNYKKYIQAEP K Y Y V R L 2 1 1 2 0 1 1 0 0 0 0 0 0 1 0 0 2 0 2 2 0 0 15 0 1790.8111 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;Q658P9;F8VZW6 Q59G16 19 33 SMARCC2;DKFZp313D0632 SWI/SNF complex subunit SMARCC2 yes no 2 2.8243E-15 131.37 2 2 1.1124 1.0451 32.824 4 Median 0.7536 0.77704 7.5767 2 0 Median 1.5823 1.3637 3.3086 2 0 Median 49118000 23598000 25521000 40988000 20391000 20597000 8130100 3206700 4923400 15472 321 15890 41072;41073;41074;41075 64461;64462;64463;64464;64465;64466;64467;64468;64469 64464 9 YYGLQILENVIK RVDTILEFSQNMNTKYYGLQILENVIKTRW NTKYYGLQILENVIKTRWKILPRNQCEGIK K Y Y I K T 0 0 1 0 0 1 1 1 0 2 2 1 0 0 0 0 0 0 2 1 0 0 12 0 1451.8024 O14980;H7BZC5;C9IZS4;C9JQ02;C9JV99;C9J673;C9JKM9 O14980 77 88 XPO1 Exportin-1 yes no 2 0.00014575 93.111 2 2.3783 2.4054 NaN 1 Median 2.3783 2.4054 NaN 1 0 Median NaN NaN NaN 0 0 Median 13929000 2800900 11128000 13929000 2800900 11128000 0 0 0 15473 1371 15891 41076;41077 64470;64471;64472 64472 3 YYGQNGQQILSASQDGTLQSFSTVHEK LRFRMGHSAPLTNIRYYGQNGQQILSASQD SQDGTLQSFSTVHEKFNKSLGHGLINKKRV R Y Y E K F 1 0 1 1 0 5 1 3 1 1 2 1 0 1 0 4 2 0 2 1 0 0 27 0 2985.4104 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 331 357 WDR36 WD repeat-containing protein 36 yes no 3 1.1202E-16 73.341 2 2 1.091 1.0086 7.0588 4 Median 0.91254 0.98904 11.997 2 0 Median 1.2378 1.0086 1.3087 2 0 Median 138310000 64923000 73391000 80442000 40373000 40069000 57871000 24550000 33321000 15474 486 15892 41078;41079;41080;41081 64473;64474;64475;64476;64477;64478 64478 6 YYLIQLLEDDAQR DVMLNQTNLQFNNNKYYLIQLLEDDAQRNF NKYYLIQLLEDDAQRNFSVWMRWGRVGKMG K Y Y Q R N 1 1 0 2 0 2 1 0 0 1 3 0 0 0 0 0 0 0 2 0 0 0 13 0 1638.8253 G3V167;A8K214;Q9UGN5;B4DV82 G3V167 131 143 PARP2 Poly [ADP-ribose] polymerase 2 yes no 2 6.0232E-09 130.94 2 0.71555 0.71431 8.5279 2 Median 0.71555 0.71431 8.5279 2 0 Median NaN NaN NaN 0 0 Median 20605000 12010000 8595800 20605000 12010000 8595800 0 0 0 15475 706 15893 41082;41083 64479;64480;64481;64482 64482 4 YYNDYGDIIK VEMNTAADIFKQYMKYYNDYGDIIKETMSK KQYMKYYNDYGDIIKETMSKTRQIDKIQCA K Y Y I K E 0 0 1 2 0 0 0 1 0 2 0 1 0 0 0 0 0 0 3 0 0 0 10 0 1262.5819 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;Q6AI02;B4DQ46;Q4LE48;Q8WVM7;B4E2Q7 B2R8Y6 823 832 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2;DKFZp686P168;STAG1 variant protein;STAG1 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.0097241 57.859 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 15476 863 15894 41084 64483 64483 1 YYPTEDVPR KNGGTRVVKLRKMPRYYPTEDVPRKLLSHG LRKMPRYYPTEDVPRKLLSHGKKPFSQHVR R Y Y P R K 0 1 0 1 0 0 1 0 0 0 0 0 0 0 2 0 1 0 2 1 0 0 9 0 1138.5295 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;F8VZ45;U3KQR5;F8VR69 Q8TBK5 115 123 RPL6 60S ribosomal protein L6 yes no 2 0.00079176 94.302 2 2 0.84507 0.85025 19.117 4 Median 0.85063 1.0012 2.8047 2 0 Median 0.83511 0.72088 3.0296 2 0 Median 1172200000 640670000 531550000 1094200000 599420000 494790000 78019000 41258000 36761000 15477 342 15895 41085;41086;41087;41088 64484;64485;64486;64487;64488;64489;64490 64486 7 YYPTEDVPRK KNGGTRVVKLRKMPRYYPTEDVPRKLLSHG RKMPRYYPTEDVPRKLLSHGKKPFSQHVRK R Y Y R K L 0 1 0 1 0 0 1 0 0 0 0 1 0 0 2 0 1 0 2 1 0 0 10 1 1266.6245 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;F8VZ45;U3KQR5;F8VR69 Q8TBK5 115 124 RPL6 60S ribosomal protein L6 yes no 2;3 0.0005926 87.639 6 2 0.85135 1.0097 28.312 6 Median 0.9363 1.1302 10.657 4 0 Median 0.75391 0.64552 8.3376 2 0 Median 530760000 286650000 244110000 497170000 266210000 230960000 33587000 20435000 13152000 15478 342 15896 41089;41090;41091;41092;41093;41094;41095;41096 64491;64492;64493;64494;64495;64496;64497;64498;64499;64500;64501;64502;64503;64504 64497 13 YYSIASSSK PIDHLCELLPRLQARYYSIASSSKVHPNSV PRLQARYYSIASSSKVHPNSVHICAVVVEY R Y Y S K V 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 4 0 0 2 0 0 0 9 0 1004.4815 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;E7EMD0;B4DDH3;B4DKM8;B4E305 B2R6E5 458 466 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.0011742 88.948 1 0.7592 0.7752 NaN 1 Median 0.7592 0.7752 NaN 1 0 Median NaN NaN NaN 0 0 Median 13175000 5550500 7624900 13175000 5550500 7624900 0 0 0 15479 719 15897 41097 64505;64506 64505 2 YYSLWIPEQAR PCLVPCCQQLSRFNRYYSLWIPEQAREAWL RFNRYYSLWIPEQAREAWLLQAQGSPSPPA R Y Y A R E 1 1 0 0 0 1 1 0 0 1 1 0 0 0 1 1 0 1 2 0 0 0 11 0 1424.7089 O60287 O60287 858 868 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0046747 57.59 2 0.8661 0.89612 NaN 1 Median 0.8661 0.89612 NaN 1 0 Median NaN NaN NaN 0 0 Median 6028100 3196400 2831700 6028100 3196400 2831700 0 0 0 15480 1392 15898 41098;41099 64507;64508 64507 2 YYTGVVNNNEMVALQR SVLFGSLRGHVVGLRYYTGVVNNNEMVALQ YTGVVNNNEMVALQRDPNNPYDKNAIKVNN R Y Y Q R D 1 1 3 0 0 1 1 1 0 0 1 0 1 0 0 0 1 0 2 3 0 0 16 0 1869.9043 Q59GQ7;A0A0C4DGA6;A8K5B6;Q14527;Q05DQ5;Q05DF7;Q05BZ6 Q59GQ7 72 87 HLTF Helicase-like transcription factor yes no 2 0.003805 45.653 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4229000 4229000 0 4229000 4229000 0 0 0 0 15481 512 15899 41100 64509 64509 361 1 YYTLFGR LQPGAKCVCGKNPAKYYTLFGRSY______ VCGKNPAKYYTLFGRSY_____________ K Y Y G R S 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 2 0 0 0 7 0 918.45995 P07814;B4DP50 P07814 1504 1510 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.031504 67.035 2 2.5902 2.6394 8.7838 2 Median 2.5902 2.6394 8.7838 2 0 Median NaN NaN NaN 0 0 Median 26498000 6601200 19897000 26498000 6601200 19897000 0 0 0 15482 1454 15900 41101;41102 64510;64511 64511 2 YYTSASGDEMVSLK HEDSQNRKKLSELLRYYTSASGDEMVSLKD RYYTSASGDEMVSLKDYCTRMKENQKHIYY R Y Y L K D 1 0 0 1 0 0 1 1 0 0 1 1 1 0 0 3 1 0 2 1 0 0 14 0 1549.697 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 465 478 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2 1.5163E-14 127.87 2 2.6218 2.8362 7.4832 2 Median 2.6218 2.8362 7.4832 2 0 Median NaN NaN NaN 0 0 Median 59879000 15756000 44122000 59879000 15756000 44122000 0 0 0 15483 1348 15901 41103;41104 64512;64513;64514;64515 64515 1010 4 YYVLNALK GQPVKVRVSYQKLLKYYVLNALKHRPPKAQ SYQKLLKYYVLNALKHRPPKAQKKRYLFRS K Y Y L K H 1 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 2 1 0 0 8 0 982.54877 Q6P2Q9;I3L0J9 Q6P2Q9 453 460 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.027969 53.554 1 0.69573 0.68232 NaN 1 Median 0.69573 0.68232 NaN 1 0 Median NaN NaN NaN 0 0 Median 22661000 12522000 10139000 22661000 12522000 10139000 0 0 0 15484 1854 15902 41105 64516 64516 1 YYVTIIDAPGHR GITIDISLWKFETSKYYVTIIDAPGHRDFI TSKYYVTIIDAPGHRDFIKNMITGTSQADC K Y Y H R D 1 1 0 1 0 0 0 1 1 2 0 0 0 0 1 0 1 0 2 1 0 0 12 0 1403.7197 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;Q5VTE0;P68104;A8K9C4;Q53GE9;Q53G85;Q96RE1;Q53GA1;B4DV42;A0A087WVQ9;B4DNE0;Q9NZS6;A0A087WV01;Q9H2I7;Q16577;A9X7H1;A6PW80;Q5JR01 Q6IPT9 85 96 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 2;3 4.0306E-08 116.3 5 4 1.7816 1.8047 38.359 8 Median 2.1509 2.5472 2.3682 4 0 Median 1.4338 1.2458 3.7363 4 0 Median 4188400000 1339400000 2849000000 3777000000 1172400000 2604600000 411420000 167010000 244410000 15485 1658 15903 41106;41107;41108;41109;41110;41111;41112;41113;41114 64517;64518;64519;64520;64521;64522;64523;64524;64525;64526;64527;64528;64529;64530;64531;64532;64533;64534;64535;64536;64537;64538;64539 64524 23 YYYAVVDCDSPETASK TSREKLRDYQFKRLKYYYAVVDCDSPETAS YYAVVDCDSPETASKIYEDCDGLEFESSCS K Y Y S K I 2 0 0 2 1 0 1 0 0 0 0 1 0 0 1 2 1 0 3 2 0 0 16 0 1866.7982 Q9H501;A0JLU5;Q05C10;A0A087WX71 Q9H501 433 448 ESF1 ESF1 homolog yes no 2 0.00015141 79.82 2 2 1.2874 1.0064 NaN 1 Median NaN NaN NaN 0 0 Median 1.2874 1.0064 NaN 1 0 Median 5514400 3153900 2360500 0 0 0 5514400 3153900 2360500 15486 2033 15904 41115;41116;41117;41118 64540;64541;64542;64543;64544 64543 5